Query 004942
Match_columns 722
No_of_seqs 207 out of 2770
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 10:32:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004942.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004942hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3okp_A GDP-mannose-dependent a 100.0 7.9E-37 2.7E-41 317.1 35.2 341 240-721 2-373 (394)
2 3fro_A GLGA glycogen synthase; 100.0 9.9E-37 3.4E-41 320.1 29.2 348 241-721 1-424 (439)
3 3c48_A Predicted glycosyltrans 100.0 3.6E-35 1.2E-39 311.5 36.5 345 243-721 21-419 (438)
4 2jjm_A Glycosyl transferase, g 100.0 2.5E-35 8.7E-40 309.6 34.5 339 241-721 14-379 (394)
5 2x6q_A Trehalose-synthase TRET 100.0 3.7E-35 1.3E-39 310.5 32.6 343 236-721 34-408 (416)
6 2r60_A Glycosyl transferase, g 100.0 1.1E-34 3.6E-39 315.8 30.2 360 243-721 8-453 (499)
7 2iw1_A Lipopolysaccharide core 100.0 5E-35 1.7E-39 302.1 24.5 334 244-720 2-364 (374)
8 1rzu_A Glycogen synthase 1; gl 100.0 7.1E-34 2.4E-38 307.1 27.6 351 243-721 1-469 (485)
9 2qzs_A Glycogen synthase; glyc 100.0 2.8E-33 9.7E-38 302.4 28.2 352 243-721 1-470 (485)
10 3oy2_A Glycosyltransferase B73 100.0 3.3E-33 1.1E-37 294.7 25.0 332 243-721 1-384 (413)
11 2gek_A Phosphatidylinositol ma 100.0 1.8E-32 6.3E-37 286.0 25.3 330 242-721 20-377 (406)
12 2iuy_A Avigt4, glycosyltransfe 100.0 2.8E-31 9.6E-36 273.7 22.7 298 240-721 1-329 (342)
13 3vue_A GBSS-I, granule-bound s 100.0 8.3E-31 2.8E-35 294.3 25.6 202 404-721 274-505 (536)
14 3s28_A Sucrose synthase 1; gly 100.0 3.4E-30 1.2E-34 302.5 24.6 382 237-721 273-763 (816)
15 2x0d_A WSAF; GT4 family, trans 100.0 1.3E-28 4.5E-33 267.1 16.5 324 242-719 46-402 (413)
16 1f0k_A MURG, UDP-N-acetylgluco 100.0 1E-26 3.4E-31 240.8 25.8 311 243-721 7-351 (364)
17 2bfw_A GLGA glycogen synthase; 99.9 1.2E-26 3.9E-31 221.7 19.2 186 407-711 1-199 (200)
18 2vsy_A XCC0866; transferase, g 99.9 2.8E-27 9.6E-32 261.0 16.2 320 241-721 204-553 (568)
19 1vgv_A UDP-N-acetylglucosamine 99.9 1.4E-24 4.6E-29 226.4 19.8 334 243-721 1-370 (384)
20 3beo_A UDP-N-acetylglucosamine 99.9 7.1E-25 2.4E-29 227.4 14.8 329 243-721 9-370 (375)
21 3qhp_A Type 1 capsular polysac 99.9 3.5E-24 1.2E-28 199.1 16.9 130 560-719 33-166 (166)
22 1uqt_A Alpha, alpha-trehalose- 99.9 1.3E-22 4.5E-27 225.7 26.9 301 311-721 123-448 (482)
23 2xci_A KDO-transferase, 3-deox 99.9 5.6E-23 1.9E-27 219.6 16.2 299 248-710 44-362 (374)
24 2hy7_A Glucuronosyltransferase 99.9 1.4E-22 4.6E-27 218.3 18.5 101 603-722 262-372 (406)
25 2f9f_A First mannosyl transfer 99.9 2.7E-22 9.3E-27 190.9 12.6 152 438-702 18-172 (177)
26 3t5t_A Putative glycosyltransf 99.9 9.7E-21 3.3E-25 211.8 23.4 251 360-721 206-467 (496)
27 3nb0_A Glycogen [starch] synth 99.9 3E-20 1E-24 213.6 25.7 128 591-721 472-627 (725)
28 1v4v_A UDP-N-acetylglucosamine 99.8 4.4E-21 1.5E-25 200.2 13.9 322 243-720 6-361 (376)
29 3otg_A CALG1; calicheamicin, T 99.8 6.3E-17 2.1E-21 170.5 24.0 111 603-720 289-403 (412)
30 3s2u_A UDP-N-acetylglucosamine 99.7 3.5E-16 1.2E-20 166.6 25.8 110 605-720 234-351 (365)
31 3dzc_A UDP-N-acetylglucosamine 99.7 6E-16 2.1E-20 166.8 21.5 336 236-719 20-393 (396)
32 2iyf_A OLED, oleandomycin glyc 99.7 7.9E-15 2.7E-19 156.2 28.1 111 604-721 281-395 (430)
33 4fzr_A SSFS6; structural genom 99.7 2.6E-16 8.9E-21 166.3 14.9 112 603-721 281-396 (398)
34 3ot5_A UDP-N-acetylglucosamine 99.6 7.1E-15 2.4E-19 159.2 17.3 103 605-718 281-386 (403)
35 3tsa_A SPNG, NDP-rhamnosyltran 99.6 4.8E-15 1.6E-19 155.7 15.2 111 603-720 267-383 (391)
36 3ia7_A CALG4; glycosysltransfe 99.6 1.8E-13 6.2E-18 143.0 22.4 110 604-720 279-393 (402)
37 3oti_A CALG3; calicheamicin, T 99.5 8.1E-14 2.8E-18 147.5 18.0 107 603-720 280-392 (398)
38 3rsc_A CALG2; TDP, enediyne, s 99.5 4.7E-12 1.6E-16 134.0 25.5 111 603-720 294-408 (415)
39 3rhz_A GTF3, nucleotide sugar 99.5 3.7E-12 1.3E-16 135.9 24.6 107 607-719 215-328 (339)
40 2p6p_A Glycosyl transferase; X 99.5 2.5E-11 8.6E-16 127.3 28.4 105 605-717 263-371 (384)
41 2yjn_A ERYCIII, glycosyltransf 99.3 1.3E-10 4.3E-15 125.3 20.0 110 603-719 316-429 (441)
42 4amg_A Snogd; transferase, pol 99.2 1.4E-09 4.9E-14 113.9 21.2 95 603-708 285-383 (400)
43 4hwg_A UDP-N-acetylglucosamine 99.2 1E-10 3.5E-15 126.4 12.3 86 606-702 263-351 (385)
44 2iya_A OLEI, oleandomycin glyc 99.1 1E-08 3.4E-13 109.4 25.5 105 604-715 303-411 (424)
45 1iir_A Glycosyltransferase GTF 99.0 9.6E-08 3.3E-12 102.0 27.8 98 603-708 282-383 (415)
46 2o6l_A UDP-glucuronosyltransfe 98.9 3.3E-09 1.1E-13 99.7 10.9 92 604-702 66-163 (170)
47 3h4t_A Glycosyltransferase GTF 98.9 1.2E-07 4.1E-12 101.4 23.7 95 604-706 266-364 (404)
48 1rrv_A Glycosyltransferase GTF 98.8 7.2E-07 2.5E-11 95.1 23.7 96 603-706 283-382 (416)
49 3q3e_A HMW1C-like glycosyltran 98.7 8.6E-08 2.9E-12 110.0 12.7 99 603-708 496-603 (631)
50 2c4m_A Glycogen phosphorylase; 98.6 3E-06 1E-10 99.4 24.4 153 433-675 504-668 (796)
51 2gj4_A Glycogen phosphorylase, 98.5 5E-06 1.7E-10 97.9 23.0 154 433-676 538-703 (824)
52 1l5w_A Maltodextrin phosphoryl 98.4 6.7E-06 2.3E-10 96.5 20.0 153 433-675 514-678 (796)
53 4gyw_A UDP-N-acetylglucosamine 96.8 0.014 4.8E-07 68.1 15.8 99 603-708 576-683 (723)
54 2c1x_A UDP-glucose flavonoid 3 96.8 0.0089 3E-07 65.6 12.8 97 606-710 325-428 (456)
55 3hbm_A UDP-sugar hydrolase; PS 96.7 0.022 7.6E-07 59.3 14.4 43 607-656 209-251 (282)
56 1ygp_A Yeast glycogen phosphor 96.2 0.2 6.9E-06 59.5 20.1 75 600-674 680-760 (879)
57 3hbf_A Flavonoid 3-O-glucosylt 96.0 0.13 4.4E-06 56.9 16.2 99 605-709 326-429 (454)
58 1psw_A ADP-heptose LPS heptosy 95.7 0.11 3.7E-06 53.5 13.3 42 607-655 243-286 (348)
59 2pq6_A UDP-glucuronosyl/UDP-gl 94.9 0.14 4.6E-06 56.4 11.6 98 605-711 352-456 (482)
60 2acv_A Triterpene UDP-glucosyl 94.3 1 3.5E-05 49.2 17.0 87 607-700 333-433 (463)
61 2vch_A Hydroquinone glucosyltr 90.6 0.72 2.5E-05 50.8 9.5 71 619-693 351-429 (480)
62 3tov_A Glycosyl transferase fa 89.9 4.8 0.00016 42.3 14.6 75 241-319 7-97 (349)
63 2jzc_A UDP-N-acetylglucosamine 88.4 0.22 7.6E-06 50.3 3.0 72 607-690 115-196 (224)
64 2gt1_A Lipopolysaccharide hept 87.7 4.5 0.00016 41.2 12.4 79 608-693 236-322 (326)
65 2bw0_A 10-FTHFDH, 10-formyltet 81.3 3.2 0.00011 44.1 7.9 73 239-318 19-106 (329)
66 3hn7_A UDP-N-acetylmuramate-L- 75.3 10 0.00034 42.4 10.0 76 239-322 16-91 (524)
67 2zay_A Response regulator rece 73.9 28 0.00097 30.1 10.8 84 607-693 34-128 (147)
68 3ilh_A Two component response 73.6 42 0.0014 28.7 12.0 114 558-695 8-141 (146)
69 3l7i_A Teichoic acid biosynthe 72.6 8.7 0.0003 44.3 8.9 82 605-695 597-685 (729)
70 3eag_A UDP-N-acetylmuramate:L- 70.3 19 0.00066 37.3 10.2 73 243-322 5-77 (326)
71 3e8x_A Putative NAD-dependent 69.2 17 0.0006 34.8 9.0 74 240-321 19-94 (236)
72 3hzh_A Chemotaxis response reg 69.0 62 0.0021 28.6 12.6 67 623-692 83-156 (157)
73 4e7p_A Response regulator; DNA 68.0 55 0.0019 28.6 11.4 113 557-693 18-140 (150)
74 3kht_A Response regulator; PSI 66.3 52 0.0018 28.3 10.8 83 607-692 33-127 (144)
75 3jte_A Response regulator rece 66.1 63 0.0022 27.7 11.6 86 607-695 29-125 (143)
76 3q0i_A Methionyl-tRNA formyltr 65.8 12 0.00042 39.4 7.6 72 240-318 5-92 (318)
77 3heb_A Response regulator rece 63.9 57 0.002 28.4 10.7 86 603-691 28-133 (152)
78 3tqq_A Methionyl-tRNA formyltr 63.7 9.4 0.00032 40.2 6.2 71 241-318 1-87 (314)
79 3eul_A Possible nitrate/nitrit 62.3 78 0.0027 27.5 11.2 114 557-694 13-136 (152)
80 3dfz_A SIRC, precorrin-2 dehyd 59.3 8.6 0.00029 38.7 4.7 72 240-320 29-100 (223)
81 1k68_A Phytochrome response re 59.0 80 0.0027 26.5 12.1 83 607-692 30-130 (140)
82 3grc_A Sensor protein, kinase; 58.1 87 0.003 26.6 11.6 83 608-693 33-127 (140)
83 3gem_A Short chain dehydrogena 57.2 15 0.00052 36.6 6.2 73 243-321 27-109 (260)
84 3h1g_A Chemotaxis protein CHEY 56.0 93 0.0032 26.3 12.1 67 624-693 52-127 (129)
85 4dad_A Putative pilus assembly 55.2 57 0.002 28.1 9.0 114 555-693 16-141 (146)
86 1fmt_A Methionyl-tRNA FMet for 54.1 21 0.0007 37.6 6.8 69 242-317 3-87 (314)
87 2j48_A Two-component sensor ki 54.0 79 0.0027 25.4 9.2 83 607-692 27-117 (119)
88 4ds3_A Phosphoribosylglycinami 53.7 28 0.00095 34.7 7.3 74 240-318 5-93 (209)
89 3hv2_A Response regulator/HD d 52.2 1.2E+02 0.0041 26.4 12.8 111 558-694 13-134 (153)
90 3av3_A Phosphoribosylglycinami 51.7 27 0.00093 34.5 6.9 71 243-318 4-89 (212)
91 3ius_A Uncharacterized conserv 51.3 22 0.00074 35.0 6.1 59 258-320 14-72 (286)
92 1k66_A Phytochrome response re 51.2 1.1E+02 0.0039 25.9 12.2 83 607-692 34-137 (149)
93 3n53_A Response regulator rece 51.0 1.2E+02 0.004 25.9 11.2 85 607-694 28-123 (140)
94 1qgu_B Protein (nitrogenase mo 50.8 37 0.0013 38.0 8.6 78 236-320 354-443 (519)
95 1i3c_A Response regulator RCP1 50.6 1.3E+02 0.0043 26.2 12.1 108 560-691 9-135 (149)
96 3cnb_A DNA-binding response re 50.3 1.2E+02 0.004 25.7 12.8 83 608-693 37-130 (143)
97 3u7q_B Nitrogenase molybdenum- 50.2 46 0.0016 37.4 9.2 78 236-320 358-447 (523)
98 3auf_A Glycinamide ribonucleot 49.6 46 0.0016 33.4 8.3 71 243-318 23-108 (229)
99 2bln_A Protein YFBG; transfera 49.2 30 0.001 36.1 7.1 62 256-317 7-81 (305)
100 3rfo_A Methionyl-tRNA formyltr 49.1 20 0.00069 37.8 5.7 69 243-318 5-89 (317)
101 3cg4_A Response regulator rece 48.4 1.3E+02 0.0043 25.6 11.1 83 607-692 33-126 (142)
102 4dzz_A Plasmid partitioning pr 48.3 59 0.002 30.1 8.4 76 244-319 2-83 (206)
103 2pln_A HP1043, response regula 48.2 1.3E+02 0.0043 25.6 11.5 107 557-693 16-133 (137)
104 3i6i_A Putative leucoanthocyan 47.6 27 0.00092 35.7 6.4 64 258-321 20-93 (346)
105 2ywr_A Phosphoribosylglycinami 47.1 43 0.0015 33.1 7.5 71 243-318 2-87 (216)
106 1qkk_A DCTD, C4-dicarboxylate 47.0 1.4E+02 0.0049 25.9 11.7 70 624-696 48-124 (155)
107 1hdo_A Biliverdin IX beta redu 46.1 41 0.0014 30.9 6.8 64 255-320 10-76 (206)
108 3lua_A Response regulator rece 45.7 71 0.0024 27.3 8.0 86 607-695 31-129 (140)
109 2z1m_A GDP-D-mannose dehydrata 45.2 40 0.0014 33.7 7.1 67 255-321 10-85 (345)
110 3lk7_A UDP-N-acetylmuramoylala 45.1 34 0.0012 37.2 7.0 74 241-322 8-83 (451)
111 2pk3_A GDP-6-deoxy-D-LYXO-4-he 45.0 48 0.0017 33.0 7.6 76 234-321 4-84 (321)
112 3hdg_A Uncharacterized protein 44.7 1.4E+02 0.0049 25.1 11.3 85 607-694 33-126 (137)
113 2gkg_A Response regulator homo 44.5 1.3E+02 0.0044 24.6 10.1 84 607-694 31-126 (127)
114 1mio_B Nitrogenase molybdenum 43.9 54 0.0018 35.9 8.4 77 237-320 307-394 (458)
115 3cg0_A Response regulator rece 41.2 1.6E+02 0.0055 24.8 11.8 76 615-693 44-128 (140)
116 2pq6_A UDP-glucuronosyl/UDP-gl 41.1 29 0.00099 37.8 5.7 36 243-281 9-45 (482)
117 1pjq_A CYSG, siroheme synthase 40.9 42 0.0014 36.8 6.9 71 241-321 11-82 (457)
118 3fwz_A Inner membrane protein 40.8 34 0.0012 30.6 5.2 63 256-320 14-80 (140)
119 3ruf_A WBGU; rossmann fold, UD 40.7 1E+02 0.0036 31.0 9.5 66 255-321 32-110 (351)
120 3kcn_A Adenylate cyclase homol 40.6 1.8E+02 0.0062 25.2 12.7 90 607-699 29-129 (151)
121 4e3z_A Putative oxidoreductase 39.0 39 0.0013 33.4 5.8 77 240-321 23-114 (272)
122 1id1_A Putative potassium chan 38.4 77 0.0026 28.5 7.3 71 241-319 2-79 (153)
123 3kcq_A Phosphoribosylglycinami 37.8 58 0.002 32.5 6.7 71 243-318 9-89 (215)
124 3tqr_A Phosphoribosylglycinami 37.8 78 0.0027 31.6 7.7 71 243-318 6-90 (215)
125 3nhm_A Response regulator; pro 37.6 1.8E+02 0.0061 24.3 12.9 84 608-694 30-123 (133)
126 4hv4_A UDP-N-acetylmuramate--L 37.4 55 0.0019 36.1 7.2 70 243-322 23-92 (494)
127 3gt7_A Sensor protein; structu 37.3 2.1E+02 0.0072 25.0 12.0 82 608-692 34-126 (154)
128 2rjn_A Response regulator rece 37.2 2E+02 0.007 24.8 12.1 87 607-696 33-129 (154)
129 1xv5_A AGT, DNA alpha-glucosyl 37.0 57 0.0019 33.3 6.5 93 615-710 279-384 (401)
130 2qvg_A Two component response 36.5 1.9E+02 0.0067 24.4 10.9 82 607-691 35-133 (143)
131 2qsj_A DNA-binding response re 36.5 1.8E+02 0.0062 25.1 9.2 84 607-693 31-124 (154)
132 3dlo_A Universal stress protei 36.5 1E+02 0.0034 27.8 7.7 89 229-319 11-125 (155)
133 3da8_A Probable 5'-phosphoribo 36.1 46 0.0016 33.2 5.7 58 260-317 25-95 (215)
134 1kyq_A Met8P, siroheme biosynt 36.0 64 0.0022 33.3 6.9 39 241-286 12-50 (274)
135 3u5t_A 3-oxoacyl-[acyl-carrier 35.2 35 0.0012 34.0 4.8 79 237-321 21-115 (267)
136 1ek6_A UDP-galactose 4-epimera 35.2 88 0.003 31.5 7.8 67 255-321 9-91 (348)
137 3enk_A UDP-glucose 4-epimerase 35.1 74 0.0025 31.9 7.2 65 256-321 13-88 (341)
138 3osu_A 3-oxoacyl-[acyl-carrier 34.8 43 0.0015 32.6 5.2 74 243-321 4-92 (246)
139 3eod_A Protein HNR; response r 34.8 2E+02 0.0068 24.0 11.4 83 608-693 34-126 (130)
140 1rkx_A CDP-glucose-4,6-dehydra 34.2 1.1E+02 0.0039 30.9 8.5 65 255-320 16-89 (357)
141 3h5i_A Response regulator/sens 34.2 2.2E+02 0.0075 24.2 13.0 83 608-693 32-124 (140)
142 1n7h_A GDP-D-mannose-4,6-dehyd 33.9 84 0.0029 32.3 7.5 67 255-321 35-116 (381)
143 3gl9_A Response regulator; bet 33.6 2.1E+02 0.0072 23.9 12.0 82 608-692 29-121 (122)
144 2wm3_A NMRA-like family domain 33.6 97 0.0033 30.6 7.7 63 258-320 15-81 (299)
145 3pdi_B Nitrogenase MOFE cofact 33.5 32 0.0011 37.9 4.4 74 238-320 309-384 (458)
146 3m2p_A UDP-N-acetylglucosamine 33.2 1.3E+02 0.0046 29.7 8.7 62 255-321 9-72 (311)
147 2vch_A Hydroquinone glucosyltr 33.2 62 0.0021 35.3 6.7 58 243-302 7-70 (480)
148 1dcf_A ETR1 protein; beta-alph 32.8 1.7E+02 0.0057 24.7 8.2 67 625-694 52-130 (136)
149 1yo6_A Putative carbonyl reduc 32.5 1.1E+02 0.0037 29.0 7.6 60 260-321 15-91 (250)
150 3oid_A Enoyl-[acyl-carrier-pro 32.0 47 0.0016 32.8 5.1 74 241-320 2-91 (258)
151 3sju_A Keto reductase; short-c 31.9 39 0.0013 33.8 4.5 77 238-321 19-111 (279)
152 2q2v_A Beta-D-hydroxybutyrate 31.7 59 0.002 31.7 5.7 62 260-321 16-89 (255)
153 1t2a_A GDP-mannose 4,6 dehydra 31.2 98 0.0033 31.7 7.5 67 255-321 31-112 (375)
154 2qr3_A Two-component system re 30.8 2.4E+02 0.0081 23.6 10.8 85 607-694 29-127 (140)
155 1jkx_A GART;, phosphoribosylgl 30.7 1.7E+02 0.006 28.8 8.9 58 261-318 14-86 (212)
156 3h2s_A Putative NADH-flavin re 30.5 67 0.0023 30.1 5.7 64 256-321 8-72 (224)
157 3llv_A Exopolyphosphatase-rela 30.4 63 0.0022 28.4 5.2 59 260-320 17-79 (141)
158 1meo_A Phosophoribosylglycinam 30.4 1E+02 0.0034 30.5 7.1 57 261-317 14-85 (209)
159 3f6c_A Positive transcription 30.2 2.4E+02 0.0082 23.5 11.0 67 624-693 47-120 (134)
160 2wqk_A 5'-nucleotidase SURE; S 30.2 2.3E+02 0.0079 28.8 9.9 37 244-284 3-39 (251)
161 1qo0_D AMIR; binding protein, 30.1 2E+02 0.0069 26.2 8.8 68 623-694 52-126 (196)
162 2o23_A HADH2 protein; HSD17B10 30.0 92 0.0031 30.1 6.7 73 243-321 12-96 (265)
163 3r6d_A NAD-dependent epimerase 29.9 98 0.0034 29.1 6.8 62 258-321 15-83 (221)
164 2gk4_A Conserved hypothetical 29.2 77 0.0026 32.1 6.1 58 261-321 32-94 (232)
165 3gk3_A Acetoacetyl-COA reducta 29.1 84 0.0029 30.9 6.3 77 240-321 22-113 (269)
166 3tfo_A Putative 3-oxoacyl-(acy 29.0 57 0.002 32.6 5.1 73 242-321 3-91 (264)
167 3i42_A Response regulator rece 29.0 2.5E+02 0.0084 23.2 10.1 85 607-694 29-123 (127)
168 1jx7_A Hypothetical protein YC 28.7 1.1E+02 0.0039 26.0 6.4 39 243-281 2-43 (117)
169 3gpi_A NAD-dependent epimerase 28.6 46 0.0016 32.8 4.3 54 260-319 14-71 (286)
170 4imr_A 3-oxoacyl-(acyl-carrier 28.6 1.7E+02 0.0059 29.0 8.6 73 243-321 33-119 (275)
171 3h7a_A Short chain dehydrogena 28.5 1E+02 0.0035 30.2 6.8 73 243-321 7-93 (252)
172 3slg_A PBGP3 protein; structur 28.5 69 0.0024 32.7 5.7 84 230-321 13-101 (372)
173 2qzj_A Two-component response 28.4 2.7E+02 0.0094 23.6 10.0 83 608-693 31-121 (136)
174 4hp8_A 2-deoxy-D-gluconate 3-d 28.4 66 0.0023 32.6 5.5 73 244-321 10-89 (247)
175 1z7e_A Protein aRNA; rossmann 28.3 80 0.0027 35.7 6.7 62 257-318 8-82 (660)
176 2acv_A Triterpene UDP-glucosyl 28.2 90 0.0031 33.8 6.9 58 243-302 10-76 (463)
177 3hdv_A Response regulator; PSI 28.1 2.7E+02 0.0091 23.3 12.2 85 608-695 34-129 (136)
178 3sxp_A ADP-L-glycero-D-mannohe 28.0 2E+02 0.0067 29.3 9.1 66 255-320 17-99 (362)
179 3rqi_A Response regulator prot 27.7 2.5E+02 0.0086 25.4 9.0 83 608-693 34-125 (184)
180 3klj_A NAD(FAD)-dependent dehy 27.6 46 0.0016 35.2 4.4 71 242-319 146-227 (385)
181 2gwr_A DNA-binding response re 27.2 4E+02 0.014 25.1 12.2 83 608-693 32-122 (238)
182 2pzm_A Putative nucleotide sug 27.2 1E+02 0.0034 31.1 6.6 74 239-321 17-98 (330)
183 3ic5_A Putative saccharopine d 27.1 1.5E+02 0.0052 24.4 6.8 57 261-319 17-77 (118)
184 2bka_A CC3, TAT-interacting pr 26.9 1.5E+02 0.005 28.1 7.4 63 257-321 27-94 (242)
185 3m1a_A Putative dehydrogenase; 26.8 1.1E+02 0.0038 30.0 6.8 73 243-321 5-89 (281)
186 3t6k_A Response regulator rece 26.8 2.9E+02 0.01 23.4 11.7 84 608-694 31-125 (136)
187 3qvo_A NMRA family protein; st 26.8 63 0.0021 31.1 4.8 62 256-319 31-96 (236)
188 3icc_A Putative 3-oxoacyl-(acy 26.6 74 0.0025 30.6 5.3 76 241-321 5-101 (255)
189 2ixd_A LMBE-related protein; h 26.5 1.1E+02 0.0038 30.6 6.7 53 267-319 26-105 (242)
190 3rd5_A Mypaa.01249.C; ssgcid, 26.4 80 0.0027 31.5 5.7 71 244-321 17-96 (291)
191 3kto_A Response regulator rece 26.4 2E+02 0.0067 24.4 7.6 67 624-693 51-126 (136)
192 1mb3_A Cell division response 26.0 2.7E+02 0.0092 22.7 11.8 66 624-692 46-120 (124)
193 3tpc_A Short chain alcohol deh 25.9 1.1E+02 0.0038 29.8 6.5 73 243-321 7-91 (257)
194 1rpn_A GDP-mannose 4,6-dehydra 25.9 1.3E+02 0.0045 30.0 7.2 67 255-321 21-96 (335)
195 3qiv_A Short-chain dehydrogena 25.8 64 0.0022 31.2 4.7 72 243-321 9-96 (253)
196 3c97_A Signal transduction his 25.6 3.1E+02 0.01 23.2 11.7 83 608-693 37-130 (140)
197 4egb_A DTDP-glucose 4,6-dehydr 25.5 1.2E+02 0.004 30.5 6.8 67 255-321 31-108 (346)
198 2x4g_A Nucleoside-diphosphate- 25.2 1.4E+02 0.0047 29.8 7.2 64 255-320 20-86 (342)
199 2yc6_A Triosephosphate isomera 25.1 2.1E+02 0.0073 29.4 8.5 42 418-460 182-224 (257)
200 3ezl_A Acetoacetyl-COA reducta 25.0 1.1E+02 0.0039 29.4 6.4 75 242-321 12-101 (256)
201 2l82_A Designed protein OR32; 25.0 4E+02 0.014 24.4 9.3 79 257-335 11-101 (162)
202 3ew7_A LMO0794 protein; Q8Y8U8 24.9 1.2E+02 0.004 28.2 6.2 62 257-321 9-71 (221)
203 1p2f_A Response regulator; DRR 24.8 1.9E+02 0.0066 26.8 7.8 68 622-692 42-116 (220)
204 1jbe_A Chemotaxis protein CHEY 24.6 2.9E+02 0.01 22.7 11.7 82 608-692 32-124 (128)
205 3m6m_D Sensory/regulatory prot 24.6 3.3E+02 0.011 23.3 11.6 83 608-693 41-136 (143)
206 2r6j_A Eugenol synthase 1; phe 24.4 1.1E+02 0.0036 30.6 6.2 58 262-320 25-88 (318)
207 1mio_A Nitrogenase molybdenum 24.0 44 0.0015 37.7 3.5 40 235-281 328-367 (533)
208 1ys7_A Transcriptional regulat 23.9 4.4E+02 0.015 24.4 12.2 82 608-692 34-124 (233)
209 3p9x_A Phosphoribosylglycinami 23.8 1.9E+02 0.0066 28.7 7.7 62 255-318 12-88 (211)
210 2ew8_A (S)-1-phenylethanol deh 23.7 1.3E+02 0.0044 29.2 6.5 73 244-321 8-92 (249)
211 3lou_A Formyltetrahydrofolate 23.7 2.9E+02 0.0098 28.7 9.4 70 243-318 96-178 (292)
212 3awd_A GOX2181, putative polyo 23.6 77 0.0026 30.6 4.8 72 243-321 13-100 (260)
213 2x5o_A UDP-N-acetylmuramoylala 23.6 1.1E+02 0.0037 33.0 6.4 72 241-322 4-75 (439)
214 3u7q_A Nitrogenase molybdenum- 23.5 91 0.0031 34.7 5.9 77 235-319 341-425 (492)
215 3kvo_A Hydroxysteroid dehydrog 23.4 1.2E+02 0.0041 31.7 6.5 74 243-321 45-139 (346)
216 4dqx_A Probable oxidoreductase 23.3 70 0.0024 32.0 4.5 73 242-321 26-111 (277)
217 1sb8_A WBPP; epimerase, 4-epim 23.3 3E+02 0.01 27.6 9.4 65 256-321 35-112 (352)
218 2q1w_A Putative nucleotide sug 23.2 1.3E+02 0.0046 30.2 6.7 66 255-321 28-99 (333)
219 3sc4_A Short chain dehydrogena 22.9 1E+02 0.0035 30.8 5.7 74 243-321 9-103 (285)
220 1j6u_A UDP-N-acetylmuramate-al 22.7 78 0.0027 34.6 5.1 65 252-322 18-82 (469)
221 1rcu_A Conserved hypothetical 22.4 80 0.0027 31.0 4.6 70 615-690 110-192 (195)
222 1u7z_A Coenzyme A biosynthesis 22.4 1.2E+02 0.0042 30.4 6.1 57 260-321 36-97 (226)
223 3i1j_A Oxidoreductase, short c 22.2 1.9E+02 0.0065 27.6 7.3 72 243-321 14-104 (247)
224 1cyd_A Carbonyl reductase; sho 22.1 1.7E+02 0.006 27.7 7.0 61 259-321 18-86 (244)
225 3tjr_A Short chain dehydrogena 22.1 1.3E+02 0.0044 30.4 6.3 72 243-321 31-118 (301)
226 1y1p_A ARII, aldehyde reductas 22.0 1.6E+02 0.0055 29.2 6.9 65 255-321 18-93 (342)
227 3pdi_A Nitrogenase MOFE cofact 21.9 35 0.0012 37.9 2.1 79 235-320 325-410 (483)
228 2qxy_A Response regulator; reg 21.9 3.6E+02 0.012 22.7 10.2 85 607-695 30-123 (142)
229 3e03_A Short chain dehydrogena 21.9 1.4E+02 0.0049 29.4 6.5 33 243-280 6-38 (274)
230 2c20_A UDP-glucose 4-epimerase 21.8 1.5E+02 0.0051 29.5 6.6 65 255-321 8-77 (330)
231 2r8r_A Sensor protein; KDPD, P 21.7 1.3E+02 0.0045 30.3 6.1 39 247-285 9-47 (228)
232 1wma_A Carbonyl reductase [NAD 21.6 1.2E+02 0.0041 29.1 5.7 71 244-321 5-92 (276)
233 3lte_A Response regulator; str 21.5 3.5E+02 0.012 22.4 11.8 85 607-694 32-126 (132)
234 1dbw_A Transcriptional regulat 21.4 3.5E+02 0.012 22.3 11.2 83 608-693 30-121 (126)
235 3dhn_A NAD-dependent epimerase 21.3 1.1E+02 0.0039 28.6 5.3 62 255-319 11-75 (227)
236 2z1n_A Dehydrogenase; reductas 21.2 1.7E+02 0.0058 28.4 6.8 32 243-279 7-38 (260)
237 3aek_A Light-independent proto 21.2 1.3E+02 0.0043 32.8 6.3 76 237-319 302-385 (437)
238 2bc0_A NADH oxidase; flavoprot 21.2 1.6E+02 0.0055 31.8 7.2 53 241-300 193-256 (490)
239 3ohs_X Trans-1,2-dihydrobenzen 21.1 1.5E+02 0.005 30.4 6.5 90 559-656 2-97 (334)
240 1l5x_A SurviVal protein E; str 20.9 1.1E+02 0.0036 32.0 5.4 35 246-283 3-37 (280)
241 2qjw_A Uncharacterized protein 20.9 79 0.0027 27.7 3.9 38 242-279 3-40 (176)
242 3n0v_A Formyltetrahydrofolate 20.9 3.1E+02 0.01 28.3 8.9 71 242-318 90-173 (286)
243 3o1l_A Formyltetrahydrofolate 20.8 2.8E+02 0.0096 29.0 8.6 70 243-318 106-188 (302)
244 3rkr_A Short chain oxidoreduct 20.8 1.7E+02 0.0057 28.6 6.6 72 243-321 29-116 (262)
245 1uls_A Putative 3-oxoacyl-acyl 20.8 1.9E+02 0.0064 28.0 6.9 71 244-321 6-87 (245)
246 3d3w_A L-xylulose reductase; u 20.7 2.6E+02 0.0087 26.6 7.8 62 258-321 17-86 (244)
247 2xdq_A Light-independent proto 20.6 92 0.0031 33.8 5.1 76 236-318 311-401 (460)
248 2bgk_A Rhizome secoisolaricire 20.5 1.6E+02 0.0056 28.5 6.5 60 260-321 28-102 (278)
249 4dyv_A Short-chain dehydrogena 20.5 77 0.0026 31.6 4.2 72 243-321 28-112 (272)
250 2gn4_A FLAA1 protein, UDP-GLCN 20.3 1.6E+02 0.0056 30.1 6.7 78 236-321 15-101 (344)
251 3l6e_A Oxidoreductase, short-c 20.2 1E+02 0.0034 29.9 4.8 72 243-321 3-87 (235)
252 1z45_A GAL10 bifunctional prot 20.1 2.5E+02 0.0086 31.7 8.7 67 255-321 18-94 (699)
No 1
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=100.00 E-value=7.9e-37 Score=317.07 Aligned_cols=341 Identities=19% Similarity=0.266 Sum_probs=271.1
Q ss_pred ccccEEEEEeCCCC--CCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHH-HhCCcEEEEcCCcc------------
Q 004942 240 VWSRKFILIFHELS--MTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPEL-ARRKIKVLEDRGEP------------ 304 (722)
Q Consensus 240 ~~~kkillI~hels--~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el-~~~gI~Vl~~~~~~------------ 304 (722)
|+++||+++++.+. .||++..+.+|+++| .||+|++++....+.....+ ...+++++..+...
T Consensus 2 ~~~mkIl~v~~~~~p~~gG~~~~~~~l~~~L--~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 79 (394)
T 3okp_A 2 SASRKTLVVTNDFPPRIGGIQSYLRDFIATQ--DPESIVVFASTQNAEEAHAYDKTLDYEVIRWPRSVMLPTPTTAHAMA 79 (394)
T ss_dssp --CCCEEEEESCCTTSCSHHHHHHHHHHTTS--CGGGEEEEEECSSHHHHHHHHTTCSSEEEEESSSSCCSCHHHHHHHH
T ss_pred CCCceEEEEeCccCCccchHHHHHHHHHHHh--cCCeEEEEECCCCccchhhhccccceEEEEccccccccchhhHHHHH
Confidence 45579999999775 899999999999999 69999999966543322333 47889999877642
Q ss_pred chhhhcCccEEEECCchhhHhHHHHHHhccCCCccEEEEEecchhHh------HHHHHhhhccccEEEEecHHhHHHHhh
Q 004942 305 SFKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREY------FDRAKLVLDRVKLLVFLSESQTKQWLT 378 (722)
Q Consensus 305 ~~~~~~k~DlVia~Sav~~~wi~~~i~~~~~g~~~ivw~I~e~r~~y------f~~~k~~l~rvk~li~lS~~~~~~~~~ 378 (722)
++.++.+||+||+++.....++...... .+.+++++++|.....+ ....+..+.+++.++++|+...+....
T Consensus 80 ~~~~~~~~Dvv~~~~~~~~~~~~~~~~~--~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~ 157 (394)
T 3okp_A 80 EIIREREIDNVWFGAAAPLALMAGTAKQ--AGASKVIASTHGHEVGWSMLPGSRQSLRKIGTEVDVLTYISQYTLRRFKS 157 (394)
T ss_dssp HHHHHTTCSEEEESSCTTGGGGHHHHHH--TTCSEEEEECCSTHHHHTTSHHHHHHHHHHHHHCSEEEESCHHHHHHHHH
T ss_pred HHHHhcCCCEEEECCcchHHHHHHHHHh--cCCCcEEEEeccchhhhhhcchhhHHHHHHHHhCCEEEEcCHHHHHHHHH
Confidence 3444789999999876544444333222 24566887777432111 111234456689999999987443111
Q ss_pred HHHhhhhhccCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCCCCCEEEEEEecCCCCCCH
Q 004942 379 WCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQ 458 (722)
Q Consensus 379 ~~~~~~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~~~~~lIl~vGri~~~Kg~ 458 (722)
. .+ + . ..+.+||||+|.+.|.+.... .+..+|+++|++++.++|+++|++.+.||+
T Consensus 158 ~-------~~--~-------~---~~~~vi~ngv~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~i~~~G~~~~~Kg~ 213 (394)
T 3okp_A 158 A-------FG--S-------H---PTFEHLPSGVDVKRFTPATPE-----DKSATRKKLGFTDTTPVIACNSRLVPRKGQ 213 (394)
T ss_dssp H-------HC--S-------S---SEEEECCCCBCTTTSCCCCHH-----HHHHHHHHTTCCTTCCEEEEESCSCGGGCH
T ss_pred h-------cC--C-------C---CCeEEecCCcCHHHcCCCCch-----hhHHHHHhcCCCcCceEEEEEeccccccCH
Confidence 1 11 1 1 135899999999999874332 237789999999888999999999999999
Q ss_pred HHHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCcccccCCC
Q 004942 459 LLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLS 538 (722)
Q Consensus 459 ~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (722)
+.+++|++.+.++.++
T Consensus 214 ~~li~a~~~l~~~~~~---------------------------------------------------------------- 229 (394)
T 3okp_A 214 DSLIKAMPQVIAARPD---------------------------------------------------------------- 229 (394)
T ss_dssp HHHHHHHHHHHHHSTT----------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhCCC----------------------------------------------------------------
Confidence 9999999999887665
Q ss_pred CCcccccCCCCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEeCCch--hh
Q 004942 539 PSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPAT--TR 616 (722)
Q Consensus 539 ~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~G~~--~d 616 (722)
++|+++|+|+..+.++.++. ++.++|.|+|.+ ++
T Consensus 230 ---------------------~~l~i~G~g~~~~~l~~~~~-----------------------~~~~~v~~~g~~~~~~ 265 (394)
T 3okp_A 230 ---------------------AQLLIVGSGRYESTLRRLAT-----------------------DVSQNVKFLGRLEYQD 265 (394)
T ss_dssp ---------------------CEEEEECCCTTHHHHHHHTG-----------------------GGGGGEEEEESCCHHH
T ss_pred ---------------------eEEEEEcCchHHHHHHHHHh-----------------------cccCeEEEcCCCCHHH
Confidence 56889999998888887762 566899999988 89
Q ss_pred HHHHHHHcCEEEEcCCCCC-------CCccHHHHHHHHhCCCEEEcCCCChhhhhccCccEEEECCCCccHHHHHHHHHH
Q 004942 617 VASLYSAADVYVINSQGLG-------ETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRY 689 (722)
Q Consensus 617 v~~lysaADv~V~pS~~l~-------EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g~tGlLvp~~d~~~e~LA~aI~~ 689 (722)
+.++|+.||++|+||. . |+||++++||||||+|||+++.||..|++.++ +|++++++|+ ++|+++|..
T Consensus 266 ~~~~~~~ad~~v~ps~--~~~~~~~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~~~-~g~~~~~~d~--~~l~~~i~~ 340 (394)
T 3okp_A 266 MINTLAAADIFAMPAR--TRGGGLDVEGLGIVYLEAQACGVPVIAGTSGGAPETVTPA-TGLVVEGSDV--DKLSELLIE 340 (394)
T ss_dssp HHHHHHHCSEEEECCC--CBGGGTBCCSSCHHHHHHHHTTCCEEECSSTTGGGGCCTT-TEEECCTTCH--HHHHHHHHH
T ss_pred HHHHHHhCCEEEecCc--cccccccccccCcHHHHHHHcCCCEEEeCCCChHHHHhcC-CceEeCCCCH--HHHHHHHHH
Confidence 9999999999999997 6 99999999999999999999999999999999 9999999998 999999999
Q ss_pred hhcCHHHHHHHHHHHHHHHHh-hcHHHHHHHHH
Q 004942 690 LLKNPSVRERMAMEGRKKSNG-LAERHSLGRYC 721 (722)
Q Consensus 690 LL~np~~r~~mg~~grk~ve~-~~~~~~~~~Y~ 721 (722)
+++|++.+++|++++++.+++ |+|+..+++|.
T Consensus 341 l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 373 (394)
T 3okp_A 341 LLDDPIRRAAMGAAGRAHVEAEWSWEIMGERLT 373 (394)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999999999999999999976 99999999885
No 2
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=100.00 E-value=9.9e-37 Score=320.08 Aligned_cols=348 Identities=18% Similarity=0.199 Sum_probs=261.2
Q ss_pred cccEEEEEeCC---CCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhH-----------------HHhCCcEEEEc
Q 004942 241 WSRKFILIFHE---LSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPE-----------------LARRKIKVLED 300 (722)
Q Consensus 241 ~~kkillI~he---ls~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~e-----------------l~~~gI~Vl~~ 300 (722)
++.||++|+++ ...||++..+.+||++|.+.||+|+++++......... ....|++++..
T Consensus 1 r~MkIl~v~~~~~p~~~gG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~ 80 (439)
T 3fro_A 1 RHMKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFTPSHGRFQGEEIGKIRVFGEEVQVKVSYEERGNLRIYRI 80 (439)
T ss_dssp CCCEEEEECSCCTTSCSSSHHHHHHHHHHHHHHTTCEEEEEEECTTCSCCEEEEEEEETTEEEEEEEEEEEETTEEEEEE
T ss_pred CceEEEEEecccCCcccCCHHHHHHHHHHHHHHCCCeEEEEecCCCCchhhhhccccccCcccceeeeeccCCCceEEEe
Confidence 35799999988 46799999999999999999999999996654432110 04578888876
Q ss_pred CC----------------cc----------chhh-----hcCccEEEECCchhhHhHHHHHHhccCCCccEEEEEecchh
Q 004942 301 RG----------------EP----------SFKT-----SMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRR 349 (722)
Q Consensus 301 ~~----------------~~----------~~~~-----~~k~DlVia~Sav~~~wi~~~i~~~~~g~~~ivw~I~e~r~ 349 (722)
+. .. .+.. ..+||+||+++... .++..++.. ..+. ++++++|....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~-~~~~~~~~~-~~~~-~~v~~~h~~~~ 157 (439)
T 3fro_A 81 GGGLLDSEDVYGPGWDGLIRKAVTFGRASVLLLNDLLREEPLPDVVHFHDWHT-VFAGALIKK-YFKI-PAVFTIHRLNK 157 (439)
T ss_dssp ESGGGGCSSTTCSHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCSEEEEESGGG-HHHHHHHHH-HHCC-CEEEEESCCCC
T ss_pred cchhccccccccCCcchhhhhhHHHHHHHHHHHHHHhccCCCCeEEEecchhh-hhhHHHHhh-ccCC-CEEEEeccccc
Confidence 54 10 1111 34999999986432 222233332 2333 37777775421
Q ss_pred -----HhH--------------HHHHhhhccccEEEEecHHhHHHHhhHHHhhhhhccCCCcccccCCCcccceEEeecC
Q 004942 350 -----EYF--------------DRAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTC 410 (722)
Q Consensus 350 -----~yf--------------~~~k~~l~rvk~li~lS~~~~~~~~~~~~~~~i~l~~~~~vv~l~v~~~~~~v~vIpn 410 (722)
.++ ...+..+.+++.++++|+...+. .. -.+...+ ..+.+|||
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~---~~----~~~~~~~-----------~~i~vi~n 219 (439)
T 3fro_A 158 SKLPAFYFHEAGLSELAPYPDIDPEHTGGYIADIVTTVSRGYLID---EW----GFFRNFE-----------GKITYVFN 219 (439)
T ss_dssp CCEEHHHHHHTTCGGGCCSSEECHHHHHHHHCSEEEESCHHHHHH---TH----HHHGGGT-----------TSEEECCC
T ss_pred ccCchHHhCccccccccccceeeHhhhhhhhccEEEecCHHHHHH---Hh----hhhhhcC-----------CceeecCC
Confidence 111 11223345588999999986332 00 0011111 13589999
Q ss_pred CCCCCCCCchhHHHHhhhhHHHHHHHhCCCCCCEEEEEEecCC-CCCCHHHHHHHHHHhHHhCCCCcchhhhhccccccc
Q 004942 411 SLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSIN-PGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRK 489 (722)
Q Consensus 411 gid~~~f~~~~~~ekr~~~r~~~R~elgl~~~~~lIl~vGri~-~~Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~ 489 (722)
|+|.+.|.+..........+..+|+++|++++ ++|+++|++. +.||++.+++|++.+.++...
T Consensus 220 gvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~--------------- 283 (439)
T 3fro_A 220 GIDCSFWNESYLTGSRDERKKSLLSKFGMDEG-VTFMFIGRFDRGQKGVDVLLKAIEILSSKKEF--------------- 283 (439)
T ss_dssp CCCTTTSCGGGSCSCHHHHHHHHHHHHTCCSC-EEEEEECCSSCTTBCHHHHHHHHHHHHTSGGG---------------
T ss_pred CCCchhcCcccccchhhhhHHHHHHHcCCCCC-cEEEEEcccccccccHHHHHHHHHHHHhcccC---------------
Confidence 99999998762110011134789999999877 9999999999 999999999999999764310
Q ss_pred cCcccccccccccccccccccccCccccccccchhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEEcCCch
Q 004942 490 KSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGK 569 (722)
Q Consensus 490 ~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~ 569 (722)
..++|+++|+|+
T Consensus 284 --------------------------------------------------------------------~~~~l~i~G~g~ 295 (439)
T 3fro_A 284 --------------------------------------------------------------------QEMRFIIIGKGD 295 (439)
T ss_dssp --------------------------------------------------------------------GGEEEEEECCCC
T ss_pred --------------------------------------------------------------------CCeEEEEEcCCC
Confidence 126789999998
Q ss_pred hH--HHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEeCC--chhhHHHHHHHcCEEEEcCCCCCCCccHHHHHH
Q 004942 570 QQ--QALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTP--ATTRVASLYSAADVYVINSQGLGETFGRVTIEA 645 (722)
Q Consensus 570 ~~--~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~G--~~~dv~~lysaADv~V~pS~~l~EgfglviLEA 645 (722)
.. +.++.++... + +.+.|+| ..+++..+|++||++|+||. .|+||++++||
T Consensus 296 ~~~~~~l~~~~~~~---------------------~--~~~~~~g~~~~~~~~~~~~~adv~v~ps~--~e~~~~~~~EA 350 (439)
T 3fro_A 296 PELEGWARSLEEKH---------------------G--NVKVITEMLSREFVRELYGSVDFVIIPSY--FEPFGLVALEA 350 (439)
T ss_dssp HHHHHHHHHHHHHC---------------------T--TEEEECSCCCHHHHHHHHTTCSEEEECBS--CCSSCHHHHHH
T ss_pred hhHHHHHHHHHhhc---------------------C--CEEEEcCCCCHHHHHHHHHHCCEEEeCCC--CCCccHHHHHH
Confidence 66 6666665422 4 6788999 45789999999999999997 89999999999
Q ss_pred HHhCCCEEEcCCCChhhhhccCccEEEECCCCccHHHHHHHHHHhhc-CHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 004942 646 MAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLK-NPSVRERMAMEGRKKSNGLAERHSLGRYC 721 (722)
Q Consensus 646 MA~GlPVVaTd~GG~~EIVe~g~tGlLvp~~d~~~e~LA~aI~~LL~-np~~r~~mg~~grk~ve~~~~~~~~~~Y~ 721 (722)
||||+|||+|+.||..|++.++ +|++++++|+ ++|+++|..+++ |++.+++|++++++.+++|+|+.++++|.
T Consensus 351 ma~G~Pvi~s~~~~~~e~~~~~-~g~~~~~~d~--~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 424 (439)
T 3fro_A 351 MCLGAIPIASAVGGLRDIITNE-TGILVKAGDP--GELANAILKALELSRSDLSKFRENCKKRAMSFSWEKSAERYV 424 (439)
T ss_dssp HHTTCEEEEESSTHHHHHCCTT-TCEEECTTCH--HHHHHHHHHHHHHTTTTTHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHCCCCeEEcCCCCcceeEEcC-ceEEeCCCCH--HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCcHHHHHHHHH
Confidence 9999999999999999999987 9999999998 999999999999 99999999999999998899999999885
No 3
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=100.00 E-value=3.6e-35 Score=311.48 Aligned_cols=345 Identities=18% Similarity=0.264 Sum_probs=254.1
Q ss_pred cEEEEEeCCC---------CCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChh-HHHhCCcEEEEcCCcc--------
Q 004942 243 RKFILIFHEL---------SMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMP-ELARRKIKVLEDRGEP-------- 304 (722)
Q Consensus 243 kkillI~hel---------s~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~-el~~~gI~Vl~~~~~~-------- 304 (722)
+||++|+++. ..||++..+.+||++|.+.||+|++++......... .....|++++..+...
T Consensus 21 mkIl~i~~~~~p~~~~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~ 100 (438)
T 3c48_A 21 MRVAMISMHTSPLQQPGTGDSGGMNVYILSTATELAKQGIEVDIYTRATRPSQGEIVRVAENLRVINIAAGPYEGLSKEE 100 (438)
T ss_dssp CEEEEECTTSCTTCC-------CHHHHHHHHHHHHHHTTCEEEEEEECCCGGGCSEEEEETTEEEEEECCSCSSSCCGGG
T ss_pred heeeeEEeeccccccCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEecCCCCCCcccccccCCeEEEEecCCCccccchhH
Confidence 6899999865 358999999999999999999999999664322111 1124678887765321
Q ss_pred ------ch--------hhhc-CccEEEECCchhhHhHHHHHHhccCCCccEEEEEecchhH-------------hHH--H
Q 004942 305 ------SF--------KTSM-KADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRRE-------------YFD--R 354 (722)
Q Consensus 305 ------~~--------~~~~-k~DlVia~Sav~~~wi~~~i~~~~~g~~~ivw~I~e~r~~-------------yf~--~ 354 (722)
.+ .+.. +||+||++... ..++...+... .+.+ +++.+|..... ... .
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~Div~~~~~~-~~~~~~~~~~~-~~~p-~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~ 177 (438)
T 3c48_A 101 LPTQLAAFTGGMLSFTRREKVTYDLIHSHYWL-SGQVGWLLRDL-WRIP-LIHTAHTLAAVKNSYRDDSDTPESEARRIC 177 (438)
T ss_dssp GGGGHHHHHHHHHHHHHHHTCCCSEEEEEHHH-HHHHHHHHHHH-HTCC-EEEECSSCHHHHSCC----CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCEEEeCCcc-HHHHHHHHHHH-cCCC-EEEEecCCcccccccccccCCcchHHHHHH
Confidence 01 1112 59999887422 12222222222 2333 66666643210 001 1
Q ss_pred HHhhhccccEEEEecHHhHHHHhhHHHhhhhhccCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHH
Q 004942 355 AKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVR 434 (722)
Q Consensus 355 ~k~~l~rvk~li~lS~~~~~~~~~~~~~~~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R 434 (722)
.+..+.+++.++++|+...+.... .++..+ ..+.+||||+|.+.|.+..... ++.+|
T Consensus 178 ~~~~~~~~d~ii~~s~~~~~~~~~-------~~g~~~-----------~k~~vi~ngvd~~~~~~~~~~~-----~~~~r 234 (438)
T 3c48_A 178 EQQLVDNADVLAVNTQEEMQDLMH-------HYDADP-----------DRISVVSPGADVELYSPGNDRA-----TERSR 234 (438)
T ss_dssp HHHHHHHCSEEEESSHHHHHHHHH-------HHCCCG-----------GGEEECCCCCCTTTSCCC---------CHHHH
T ss_pred HHHHHhcCCEEEEcCHHHHHHHHH-------HhCCCh-----------hheEEecCCccccccCCcccch-----hhhhH
Confidence 123455689999999987443111 022221 1358999999999887754321 24578
Q ss_pred HHhCCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCc
Q 004942 435 KEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLS 514 (722)
Q Consensus 435 ~elgl~~~~~lIl~vGri~~~Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~ 514 (722)
+++|++++.++|+++|++.+.||++.+++|+..+.++.|..
T Consensus 235 ~~~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~p~~--------------------------------------- 275 (438)
T 3c48_A 235 RELGIPLHTKVVAFVGRLQPFKGPQVLIKAVAALFDRDPDR--------------------------------------- 275 (438)
T ss_dssp HHTTCCSSSEEEEEESCBSGGGCHHHHHHHHHHHHHHCTTC---------------------------------------
T ss_pred HhcCCCCCCcEEEEEeeecccCCHHHHHHHHHHHHhhCCCc---------------------------------------
Confidence 99999888999999999999999999999999998876531
Q ss_pred cccccccchhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEEcCC----chhHHHHHHhhhccCCCCCCchh
Q 004942 515 SNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSD----GKQQQALKILIGSVGSKSNKVPY 590 (722)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~----G~~~~~Lk~lI~~~Gs~sn~~~Y 590 (722)
.++|+++|+ |+..+.++.++..
T Consensus 276 --------------------------------------------~~~l~i~G~~~~~g~~~~~l~~~~~~---------- 301 (438)
T 3c48_A 276 --------------------------------------------NLRVIICGGPSGPNATPDTYRHMAEE---------- 301 (438)
T ss_dssp --------------------------------------------SEEEEEECCBC------CHHHHHHHH----------
T ss_pred --------------------------------------------ceEEEEEeCCCCCCcHHHHHHHHHHH----------
Confidence 156778888 7666666666643
Q ss_pred HHHHHHHHHhcCCCCCcEEeCCch--hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhccCc
Q 004942 591 VKEILEFLSQHSNLSKAMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNV 668 (722)
Q Consensus 591 ~~el~~~l~~~~~L~~~V~f~G~~--~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g~ 668 (722)
+++.++|.|+|.+ +++.++|+.||++|+||. .|+||++++||||||+|||+++.||..|++.++.
T Consensus 302 -----------~~l~~~v~~~g~~~~~~~~~~~~~adv~v~ps~--~e~~~~~~~Eama~G~PvI~~~~~~~~e~i~~~~ 368 (438)
T 3c48_A 302 -----------LGVEKRIRFLDPRPPSELVAVYRAADIVAVPSF--NESFGLVAMEAQASGTPVIAARVGGLPIAVAEGE 368 (438)
T ss_dssp -----------TTCTTTEEEECCCCHHHHHHHHHHCSEEEECCS--CCSSCHHHHHHHHTTCCEEEESCTTHHHHSCBTT
T ss_pred -----------cCCCCcEEEcCCCChHHHHHHHHhCCEEEECcc--ccCCchHHHHHHHcCCCEEecCCCChhHHhhCCC
Confidence 3788899999988 789999999999999997 8999999999999999999999999999999999
Q ss_pred cEEEECCCCccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 004942 669 TGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKSNGLAERHSLGRYC 721 (722)
Q Consensus 669 tGlLvp~~d~~~e~LA~aI~~LL~np~~r~~mg~~grk~ve~~~~~~~~~~Y~ 721 (722)
+|++++++|+ ++|+++|..+++|++.+++|++++++.+++|+|+.++++|.
T Consensus 369 ~g~~~~~~d~--~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 419 (438)
T 3c48_A 369 TGLLVDGHSP--HAWADALATLLDDDETRIRMGEDAVEHARTFSWAATAAQLS 419 (438)
T ss_dssp TEEEESSCCH--HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEECCCCCH--HHHHHHHHHHHcCHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999998 99999999999999999999999999998899999998875
No 4
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=100.00 E-value=2.5e-35 Score=309.62 Aligned_cols=339 Identities=19% Similarity=0.258 Sum_probs=252.4
Q ss_pred cccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCcc----------------
Q 004942 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP---------------- 304 (722)
Q Consensus 241 ~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~---------------- 304 (722)
|+.++..... -..||++..+.+||++|.++||+|.+++....... .....++.+...+...
T Consensus 14 ~~~~~~~~~~-p~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (394)
T 2jjm_A 14 MKLKIGITCY-PSVGGSGVVGTELGKQLAERGHEIHFITSGLPFRL--NKVYPNIYFHEVTVNQYSVFQYPPYDLALASK 90 (394)
T ss_dssp -CCEEEEECC-C--CHHHHHHHHHHHHHHHTTCEEEEECSSCC------CCCTTEEEECCCCC----CCSCCHHHHHHHH
T ss_pred heeeeehhcC-CCCCCHHHHHHHHHHHHHhCCCEEEEEeCCCCCcc--cccCCceEEEecccccccccccccccHHHHHH
Confidence 3355554433 35899999999999999999999999985433221 1123455554432210
Q ss_pred --chhhhcCccEEEECCchhhHhHHHHHHhccCC-CccEEEEEecchh-------HhHHHHHhhhccccEEEEecHHhHH
Q 004942 305 --SFKTSMKADLVIAGSAVCATWIDQYITRFPAG-GSQVVWWIMENRR-------EYFDRAKLVLDRVKLLVFLSESQTK 374 (722)
Q Consensus 305 --~~~~~~k~DlVia~Sav~~~wi~~~i~~~~~g-~~~ivw~I~e~r~-------~yf~~~k~~l~rvk~li~lS~~~~~ 374 (722)
++.++.+||+||+++.....+ ..++.....+ ..++++++|.... .+....+..+.+++.++++|+...+
T Consensus 91 l~~~l~~~~~Dvv~~~~~~~~~~-~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~ 169 (394)
T 2jjm_A 91 MAEVAQRENLDILHVHYAIPHAI-CAYLAKQMIGERIKIVTTLHGTDITVLGSDPSLNNLIRFGIEQSDVVTAVSHSLIN 169 (394)
T ss_dssp HHHHHHHHTCSEEEECSSTTHHH-HHHHHHHHTTTCSEEEEECCHHHHHTTTTCTTTHHHHHHHHHHSSEEEESCHHHHH
T ss_pred HHHHHHHcCCCEEEEcchhHHHH-HHHHHHHhhcCCCCEEEEEecCcccccCCCHHHHHHHHHHHhhCCEEEECCHHHHH
Confidence 223367999999986553322 2333333322 3457777765211 1111223445668899999998644
Q ss_pred HHhhHHHhhhhhccCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCCCCCEEEEEEecCCC
Q 004942 375 QWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINP 454 (722)
Q Consensus 375 ~~~~~~~~~~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~~~~~lIl~vGri~~ 454 (722)
. ... ..+. + ..+.+||||+|.+.|.+... ..+|++++++++.++|+++|++.+
T Consensus 170 ~----~~~---~~~~-~-----------~~~~vi~ngv~~~~~~~~~~--------~~~~~~~~~~~~~~~i~~~G~~~~ 222 (394)
T 2jjm_A 170 E----THE---LVKP-N-----------KDIQTVYNFIDERVYFKRDM--------TQLKKEYGISESEKILIHISNFRK 222 (394)
T ss_dssp H----HHH---HTCC-S-----------SCEEECCCCCCTTTCCCCCC--------HHHHHHTTCC---CEEEEECCCCG
T ss_pred H----HHH---hhCC-c-----------ccEEEecCCccHHhcCCcch--------HHHHHHcCCCCCCeEEEEeecccc
Confidence 3 110 0111 1 13589999999998876532 456788999888889999999999
Q ss_pred CCCHHHHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCcccc
Q 004942 455 GKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRK 534 (722)
Q Consensus 455 ~Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (722)
.||++.+++|++.+.++ ++
T Consensus 223 ~Kg~~~li~a~~~l~~~-~~------------------------------------------------------------ 241 (394)
T 2jjm_A 223 VKRVQDVVQAFAKIVTE-VD------------------------------------------------------------ 241 (394)
T ss_dssp GGTHHHHHHHHHHHHHS-SC------------------------------------------------------------
T ss_pred ccCHHHHHHHHHHHHhh-CC------------------------------------------------------------
Confidence 99999999999999765 22
Q ss_pred cCCCCCcccccCCCCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEeCCch
Q 004942 535 NLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPAT 614 (722)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~G~~ 614 (722)
.+|+++|+|+..+.++.++... ++.++|.|+|..
T Consensus 242 -------------------------~~l~i~G~g~~~~~l~~~~~~~---------------------~l~~~v~~~g~~ 275 (394)
T 2jjm_A 242 -------------------------AKLLLVGDGPEFCTILQLVKNL---------------------HIEDRVLFLGKQ 275 (394)
T ss_dssp -------------------------CEEEEECCCTTHHHHHHHHHTT---------------------TCGGGBCCCBSC
T ss_pred -------------------------CEEEEECCchHHHHHHHHHHHc---------------------CCCCeEEEeCch
Confidence 4688999998888877776433 778899999999
Q ss_pred hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhccCccEEEECCCCccHHHHHHHHHHhhcCH
Q 004942 615 TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNP 694 (722)
Q Consensus 615 ~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g~tGlLvp~~d~~~e~LA~aI~~LL~np 694 (722)
+++.++|+.||++|+||. .|+||++++||||||+|||+++.||..|++.++.+|++++++|+ ++|+++|..+++|+
T Consensus 276 ~~~~~~~~~adv~v~ps~--~e~~~~~~~EAma~G~PvI~~~~~~~~e~v~~~~~g~~~~~~d~--~~la~~i~~l~~~~ 351 (394)
T 2jjm_A 276 DNVAELLAMSDLMLLLSE--KESFGLVLLEAMACGVPCIGTRVGGIPEVIQHGDTGYLCEVGDT--TGVADQAIQLLKDE 351 (394)
T ss_dssp SCTHHHHHTCSEEEECCS--CCSCCHHHHHHHHTTCCEEEECCTTSTTTCCBTTTEEEECTTCH--HHHHHHHHHHHHCH
T ss_pred hhHHHHHHhCCEEEeccc--cCCCchHHHHHHhcCCCEEEecCCChHHHhhcCCceEEeCCCCH--HHHHHHHHHHHcCH
Confidence 999999999999999997 89999999999999999999999999999999999999999998 99999999999999
Q ss_pred HHHHHHHHHHHHHH-HhhcHHHHHHHHH
Q 004942 695 SVRERMAMEGRKKS-NGLAERHSLGRYC 721 (722)
Q Consensus 695 ~~r~~mg~~grk~v-e~~~~~~~~~~Y~ 721 (722)
+.+++|++++++.+ ++|+|+.++++|.
T Consensus 352 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 379 (394)
T 2jjm_A 352 ELHRNMGERARESVYEQFRSEKIVSQYE 379 (394)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 99999999999999 7799999999875
No 5
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=100.00 E-value=3.7e-35 Score=310.55 Aligned_cols=343 Identities=17% Similarity=0.194 Sum_probs=248.8
Q ss_pred hhhhccccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhH---HH--hCCcEEEEcCCcc------
Q 004942 236 FARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPE---LA--RRKIKVLEDRGEP------ 304 (722)
Q Consensus 236 f~~~~~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~e---l~--~~gI~Vl~~~~~~------ 304 (722)
+..-|+++||+++++.+..||++..+.+|+++|.+.||+|.+++....+..... +. -.+++.+......
T Consensus 34 ~~~~~~~mkIl~v~~~~~~GG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (416)
T 2x6q_A 34 KAEKLKGRSFVHVNSTSFGGGVAEILHSLVPLLRSIGIEARWFVIEGPTEFFNVTKTFHNALQGNESLKLTEEMKELYLN 113 (416)
T ss_dssp HHHTTTTCEEEEEESCSSSSTHHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHHHHHTTCCSCCCCHHHHHHHHH
T ss_pred hhhhhhccEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCcchhhhhcccceeecccccccccHHHHHHHHH
Confidence 445677789999999999999999999999999999999999986543222111 11 1233222221110
Q ss_pred ------chhhhcCccEEEECCchhhHhHHHHHHhccCCCccEEEEEecchh----HhHHHHHhhhccccEEEEecHHhHH
Q 004942 305 ------SFKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRR----EYFDRAKLVLDRVKLLVFLSESQTK 374 (722)
Q Consensus 305 ------~~~~~~k~DlVia~Sav~~~wi~~~i~~~~~g~~~ivw~I~e~r~----~yf~~~k~~l~rvk~li~lS~~~~~ 374 (722)
.+.+..+||+||+++.....+. .......+++|++|.... .+.......+.+.+.+++.+...
T Consensus 114 ~~~~~~~~l~~~~~Dvv~~~~~~~~~~~-----~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~-- 186 (416)
T 2x6q_A 114 VNRENSKFIDLSSFDYVLVHDPQPAALI-----EFYEKKSPWLWRCHIDLSSPNREFWEFLRRFVEKYDRYIFHLPEY-- 186 (416)
T ss_dssp HHHHHHHSSCGGGSSEEEEESSTTGGGG-----GGSCCCSCEEEECCSCCSSCCHHHHHHHHHHHTTSSEEEESSGGG--
T ss_pred HHHHHHHHHhhcCCCEEEEeccchhhHH-----HHHHhcCCEEEEEccccCCccHHHHHHHHHHHHhCCEEEEechHH--
Confidence 1122559999999875433222 111122457887774321 12222223344555555433221
Q ss_pred HHhhHHHhhhhhccCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCCCCCEEEEEEecCCC
Q 004942 375 QWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINP 454 (722)
Q Consensus 375 ~~~~~~~~~~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~~~~~lIl~vGri~~ 454 (722)
....... ..+.+||||+|+..+.+...... .+..+|+++|++++.++|+++|++.+
T Consensus 187 ----------~~~~~~~-----------~~~~vi~ngvd~~~~~~~~~~~~---~~~~~r~~~~~~~~~~~i~~vGrl~~ 242 (416)
T 2x6q_A 187 ----------VQPELDR-----------NKAVIMPPSIDPLSEKNVELKQT---EILRILERFDVDPEKPIITQVSRFDP 242 (416)
T ss_dssp ----------SCTTSCT-----------TTEEECCCCBCTTSTTTSCCCHH---HHHHHHHHTTCCTTSCEEEEECCCCT
T ss_pred ----------HHhhCCc-----------cceEEeCCCCChhhhcccccChh---hHHHHHHHhCCCCCCcEEEEEecccc
Confidence 0111111 13579999999877653211000 23678999999988999999999999
Q ss_pred CCCHHHHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCcccc
Q 004942 455 GKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRK 534 (722)
Q Consensus 455 ~Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (722)
.||++.+++|+..+.++.|+
T Consensus 243 ~Kg~~~li~a~~~l~~~~~~------------------------------------------------------------ 262 (416)
T 2x6q_A 243 WKGIFDVIEIYRKVKEKIPG------------------------------------------------------------ 262 (416)
T ss_dssp TSCHHHHHHHHHHHHHHCTT------------------------------------------------------------
T ss_pred ccCHHHHHHHHHHHHHhCCC------------------------------------------------------------
Confidence 99999999999999887665
Q ss_pred cCCCCCcccccCCCCccccCCcccceeEEEcCCchh-----HHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEE
Q 004942 535 NLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQ-----QQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAML 609 (722)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~-----~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~ 609 (722)
.+|+++|+|+. .+.++.++ +.+++.++|.
T Consensus 263 -------------------------~~l~i~G~g~~~~~~~~~~l~~~~---------------------~~~~~~~~V~ 296 (416)
T 2x6q_A 263 -------------------------VQLLLVGVMAHDDPEGWIYFEKTL---------------------RKIGEDYDVK 296 (416)
T ss_dssp -------------------------CEEEEEECCCTTCHHHHHHHHHHH---------------------HHHTTCTTEE
T ss_pred -------------------------eEEEEEecCcccchhHHHHHHHHH---------------------HHhCCCCcEE
Confidence 46788888864 22333333 3337788999
Q ss_pred eCCchh-----hHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhccCccEEEECCCCccHHHHH
Q 004942 610 WTPATT-----RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLA 684 (722)
Q Consensus 610 f~G~~~-----dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g~tGlLvp~~d~~~e~LA 684 (722)
|+|... ++..+|++||++|+||. .|+||++++||||||+|||+|+.||++|++.++.+|++++ |+ ++|+
T Consensus 297 ~~G~~~~~~~~~~~~~~~~ad~~v~ps~--~E~~~~~~lEAma~G~PvI~~~~~g~~e~i~~~~~g~l~~--d~--~~la 370 (416)
T 2x6q_A 297 VLTNLIGVHAREVNAFQRASDVILQMSI--REGFGLTVTEAMWKGKPVIGRAVGGIKFQIVDGETGFLVR--DA--NEAV 370 (416)
T ss_dssp EEEGGGTCCHHHHHHHHHHCSEEEECCS--SCSSCHHHHHHHHTTCCEEEESCHHHHHHCCBTTTEEEES--SH--HHHH
T ss_pred EecccCCCCHHHHHHHHHhCCEEEECCC--cCCCccHHHHHHHcCCCEEEccCCCChhheecCCCeEEEC--CH--HHHH
Confidence 999653 89999999999999997 8999999999999999999999999999999999999998 66 9999
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHH-hhcHHHHHHHHH
Q 004942 685 QNLRYLLKNPSVRERMAMEGRKKSN-GLAERHSLGRYC 721 (722)
Q Consensus 685 ~aI~~LL~np~~r~~mg~~grk~ve-~~~~~~~~~~Y~ 721 (722)
++|..+++|++.+++|++++++.++ +|+|+.++++|.
T Consensus 371 ~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~ 408 (416)
T 2x6q_A 371 EVVLYLLKHPEVSKEMGAKAKERVRKNFIITKHMERYL 408 (416)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHTBHHHHHHHHH
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 9999999999999999999999996 599999999885
No 6
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=100.00 E-value=1.1e-34 Score=315.76 Aligned_cols=360 Identities=15% Similarity=0.187 Sum_probs=257.2
Q ss_pred cEEEEEeCCC-------------CCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhH----HH----hCCcEEEEcC
Q 004942 243 RKFILIFHEL-------------SMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPE----LA----RRKIKVLEDR 301 (722)
Q Consensus 243 kkillI~hel-------------s~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~e----l~----~~gI~Vl~~~ 301 (722)
+||++|++.. ..||++..+.+||++|.+.||+|++++........+. +. ..|++++..+
T Consensus 8 MkIl~i~~~~~P~~~~l~v~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~ 87 (499)
T 2r60_A 8 KHVAFLNPQGNFDPADSYWTEHPDFGGQLVYVKEVSLALAEMGVQVDIITRRIKDENWPEFSGEIDYYQETNKVRIVRIP 87 (499)
T ss_dssp CEEEEECCSSCCCTTCTTTTSBTTBSHHHHHHHHHHHHHHHTTCEEEEEEECCCBTTBGGGCCSEEECTTCSSEEEEEEC
T ss_pred ceEEEEecCCCccccccccCCCCCCCCeeehHHHHHHHHHhcCCeEEEEeCCCCcccccchhhhHHhccCCCCeEEEEec
Confidence 6999999864 4699999999999999999999999996543222111 21 3689998776
Q ss_pred Ccc---------------------chhhh--cCccEEEECCchhhHhHHHHHHhccCCCccEEEEEecchhHhH------
Q 004942 302 GEP---------------------SFKTS--MKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYF------ 352 (722)
Q Consensus 302 ~~~---------------------~~~~~--~k~DlVia~Sav~~~wi~~~i~~~~~g~~~ivw~I~e~r~~yf------ 352 (722)
... ++.++ .+||+||+++.. ..++...++.. .+.+ +++++|.......
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~Divh~~~~~-~~~~~~~~~~~-~~~p-~v~~~H~~~~~~~~~~~~~ 164 (499)
T 2r60_A 88 FGGDKFLPKEELWPYLHEYVNKIINFYREEGKFPQVVTTHYGD-GGLAGVLLKNI-KGLP-FTFTGHSLGAQKMEKLNVN 164 (499)
T ss_dssp CSCSSCCCGGGCGGGHHHHHHHHHHHHHHHTCCCSEEEEEHHH-HHHHHHHHHHH-HCCC-EEEECSSCHHHHHHTTCCC
T ss_pred CCCcCCcCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCCc-chHHHHHHHHh-cCCc-EEEEccCcccccchhhccC
Confidence 421 11123 589999888532 22332223322 2334 6777775321110
Q ss_pred -----------------HHHHhhhccccEEEEecHHhHHHHhhHHHhhhhh---cc-CCCcccccCCCcccceEEeecCC
Q 004942 353 -----------------DRAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLK---LR-SQPAVVPLSVNDELAFVAGFTCS 411 (722)
Q Consensus 353 -----------------~~~k~~l~rvk~li~lS~~~~~~~~~~~~~~~i~---l~-~~~~vv~l~v~~~~~~v~vIpng 411 (722)
...+..+.+++.++++|+...+. . .. ++ .. + ......+.+||||
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~----~----~~~~~~g~~~------~-~~~~~ki~vi~ng 229 (499)
T 2r60_A 165 TSNFKEMDERFKFHRRIIAERLTMSYADKIIVSTSQERFG----Q----YSHDLYRGAV------N-VEDDDKFSVIPPG 229 (499)
T ss_dssp STTSHHHHHHHCHHHHHHHHHHHHHHCSEEEESSHHHHHH----T----TTSGGGTTTC------C-TTCGGGEEECCCC
T ss_pred CCCcchhhhhHHHHHHHHHHHHHHhcCCEEEECCHHHHHH----H----Hhhhcccccc------c-ccCCCCeEEECCC
Confidence 01123445689999999986442 1 01 11 10 0 0001236899999
Q ss_pred CCCCCCCchhHHHHhhhhHHHHHHHhC-----CCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCcchhhhhcccc
Q 004942 412 LNTPTSSPEKMREKRNLLRDSVRKEMG-----LTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNV 486 (722)
Q Consensus 412 id~~~f~~~~~~ekr~~~r~~~R~elg-----l~~~~~lIl~vGri~~~Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~~ 486 (722)
+|.+.|.+....+ .+..+|+++| ++++.++|+++|++.+.||++.|++|+..+.++.++
T Consensus 230 vd~~~~~~~~~~~----~~~~~r~~~~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~------------ 293 (499)
T 2r60_A 230 VNTRVFDGEYGDK----IKAKITKYLERDLGSERMELPAIIASSRLDQKKNHYGLVEAYVQNKELQDK------------ 293 (499)
T ss_dssp BCTTTSSSCCCHH----HHHHHHHHHHHHSCGGGTTSCEEEECSCCCGGGCHHHHHHHHHTCHHHHHH------------
T ss_pred cChhhcCccchhh----hHHHHHHHhcccccccCCCCcEEEEeecCccccCHHHHHHHHHHHHHhCCC------------
Confidence 9999887754322 2367888888 878888999999999999999999999998765332
Q ss_pred ccccCcccccccccccccccccccccCccccccccchhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEEcC
Q 004942 487 GRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKS 566 (722)
Q Consensus 487 ~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G 566 (722)
..+++++|
T Consensus 294 ------------------------------------------------------------------------~~~l~i~G 301 (499)
T 2r60_A 294 ------------------------------------------------------------------------ANLVLTLR 301 (499)
T ss_dssp ------------------------------------------------------------------------CEEEEEES
T ss_pred ------------------------------------------------------------------------ceEEEEEC
Confidence 03466777
Q ss_pred C--chhHHHHHHhhhccCCC-CCCchhHHHHHHHHHhcCCCCCcEEeCCch--hhHHHHHHHc----CEEEEcCCCCCCC
Q 004942 567 D--GKQQQALKILIGSVGSK-SNKVPYVKEILEFLSQHSNLSKAMLWTPAT--TRVASLYSAA----DVYVINSQGLGET 637 (722)
Q Consensus 567 ~--G~~~~~Lk~lI~~~Gs~-sn~~~Y~~el~~~l~~~~~L~~~V~f~G~~--~dv~~lysaA----Dv~V~pS~~l~Eg 637 (722)
+ |+... ++.- .....|.+++.+.+ +.+++.++|.|+|.+ +++..+|++| |++|+||. .|+
T Consensus 302 ~~~~~~~~--------y~~l~~~~~~y~~~l~~~~-~~~~l~~~V~~~G~v~~~~~~~~~~~a~~~~dv~v~pS~--~Eg 370 (499)
T 2r60_A 302 GIENPFED--------YSRAGQEEKEILGKIIELI-DNNDCRGKVSMFPLNSQQELAGCYAYLASKGSVFALTSF--YEP 370 (499)
T ss_dssp SCSBTTTB--------CTTSCHHHHHHHHHHHHHH-HHTTCBTTEEEEECCSHHHHHHHHHHHHHTTCEEEECCS--CBC
T ss_pred CCCCcccc--------cccccccchHHHHHHHHHH-HhcCCCceEEECCCCCHHHHHHHHHhcCcCCCEEEECcc--cCC
Confidence 6 33000 0000 00011223333322 334888999999986 7899999999 99999997 899
Q ss_pred ccHHHHHHHHhCCCEEEcCCCChhhhhccCccEEEECCCCccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh-hcHHHH
Q 004942 638 FGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKSNG-LAERHS 716 (722)
Q Consensus 638 fglviLEAMA~GlPVVaTd~GG~~EIVe~g~tGlLvp~~d~~~e~LA~aI~~LL~np~~r~~mg~~grk~ve~-~~~~~~ 716 (722)
||++++||||||+|||+|+.||..|++.++.+|++++++|+ ++|+++|..+++|++.+++|++++++.+++ |+|+.+
T Consensus 371 ~~~~~lEAma~G~PvI~s~~~g~~e~v~~~~~g~l~~~~d~--~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~ 448 (499)
T 2r60_A 371 FGLAPVEAMASGLPAVVTRNGGPAEILDGGKYGVLVDPEDP--EDIARGLLKAFESEETWSAYQEKGKQRVEERYTWQET 448 (499)
T ss_dssp CCSHHHHHHHTTCCEEEESSBHHHHHTGGGTSSEEECTTCH--HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSBHHHH
T ss_pred CCcHHHHHHHcCCCEEEecCCCHHHHhcCCceEEEeCCCCH--HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 99999999999999999999999999999999999999998 999999999999999999999999999987 999999
Q ss_pred HHHHH
Q 004942 717 LGRYC 721 (722)
Q Consensus 717 ~~~Y~ 721 (722)
+++|.
T Consensus 449 ~~~~~ 453 (499)
T 2r60_A 449 ARGYL 453 (499)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98875
No 7
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=100.00 E-value=5e-35 Score=302.11 Aligned_cols=334 Identities=16% Similarity=0.197 Sum_probs=246.1
Q ss_pred EEEEEeCC-CCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCcc---------------chh
Q 004942 244 KFILIFHE-LSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP---------------SFK 307 (722)
Q Consensus 244 killI~he-ls~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~---------------~~~ 307 (722)
||+++++. ...||++..+.+||++|.+.||+|++++....+... .|++++..+... ++.
T Consensus 2 kIl~i~~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~l~~~i 76 (374)
T 2iw1_A 2 IVAFCLYKYFPFGGLQRDFMRIASTVAARGHHVRVYTQSWEGDCP-----KAFELIQVPVKSHTNHGRNAEYYAWVQNHL 76 (374)
T ss_dssp CEEEECSEECTTCHHHHHHHHHHHHHHHTTCCEEEEESEECSCCC-----TTCEEEECCCCCSSHHHHHHHHHHHHHHHH
T ss_pred eEEEEEeecCCCcchhhHHHHHHHHHHhCCCeEEEEecCCCCCCC-----CCcEEEEEccCcccchhhHHHHHHHHHHHH
Confidence 68888886 467999999999999999999999999965444332 478888776542 233
Q ss_pred hhcCccEEEECCchhhHh--------HHHHHHhccCCCccEEEEEecchhHhHHH-HHhhh--ccccEEEEecHHhHHHH
Q 004942 308 TSMKADLVIAGSAVCATW--------IDQYITRFPAGGSQVVWWIMENRREYFDR-AKLVL--DRVKLLVFLSESQTKQW 376 (722)
Q Consensus 308 ~~~k~DlVia~Sav~~~w--------i~~~i~~~~~g~~~ivw~I~e~r~~yf~~-~k~~l--~rvk~li~lS~~~~~~~ 376 (722)
+..+||+||+++...... ....+.+. .+... . ...+..++.. ....+ ...+.++++|+...+..
T Consensus 77 ~~~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~-~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~ 151 (374)
T 2iw1_A 77 KEHPADRVVGFNKMPGLDVYFAADVCYAEKVAQE-KGFLY---R-LTSRYRHYAAFERATFEQGKSTKLMMLTDKQIADF 151 (374)
T ss_dssp HHSCCSEEEESSCCTTCSEEECCSCCHHHHHHHH-CCHHH---H-TSHHHHHHHHHHHHHHSTTCCCEEEESCHHHHHHH
T ss_pred hccCCCEEEEecCCCCceeeeccccccceeeeec-ccchh---h-hcHHHHHHHHHHHHHhhccCCcEEEEcCHHHHHHH
Confidence 467999999875321100 00011110 00000 0 0000011111 11112 24788999999864431
Q ss_pred hhHHHhhhhhccCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCCCCCEEEEEEecCCCCC
Q 004942 377 LTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGK 456 (722)
Q Consensus 377 ~~~~~~~~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~~~~~lIl~vGri~~~K 456 (722)
.. .++..+ ..+.+||||+|.+.|.+..... .+..+|+++|+++++++|+++|++.+.|
T Consensus 152 ~~-------~~~~~~-----------~~~~vi~ngv~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~G~~~~~K 209 (374)
T 2iw1_A 152 QK-------HYQTEP-----------ERFQILPPGIYPDRKYSEQIPN----SREIYRQKNGIKEQQNLLLQVGSDFGRK 209 (374)
T ss_dssp HH-------HHCCCG-----------GGEEECCCCCCGGGSGGGSCTT----HHHHHHHHTTCCTTCEEEEEECSCTTTT
T ss_pred HH-------HhCCCh-----------hheEEecCCcCHHhcCcccchh----HHHHHHHHhCCCCCCeEEEEeccchhhc
Confidence 11 112211 1358999999999887654321 2467899999998999999999999999
Q ss_pred CHHHHHHHHHHhHHh-CCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCccccc
Q 004942 457 GQLLLVESAQLMIEQ-EPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKN 535 (722)
Q Consensus 457 g~~~LleA~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (722)
|++.+++|+..+.++ .++
T Consensus 210 ~~~~li~a~~~l~~~~~~~------------------------------------------------------------- 228 (374)
T 2iw1_A 210 GVDRSIEALASLPESLRHN------------------------------------------------------------- 228 (374)
T ss_dssp THHHHHHHHHTSCHHHHHT-------------------------------------------------------------
T ss_pred CHHHHHHHHHHhHhccCCc-------------------------------------------------------------
Confidence 999999999988544 222
Q ss_pred CCCCCcccccCCCCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEeCCchh
Q 004942 536 LLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATT 615 (722)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~G~~~ 615 (722)
++++++|+|++ +.++.++.. +++.++|.|+|..+
T Consensus 229 ------------------------~~l~i~G~g~~-~~~~~~~~~---------------------~~~~~~v~~~g~~~ 262 (374)
T 2iw1_A 229 ------------------------TLLFVVGQDKP-RKFEALAEK---------------------LGVRSNVHFFSGRN 262 (374)
T ss_dssp ------------------------EEEEEESSSCC-HHHHHHHHH---------------------HTCGGGEEEESCCS
T ss_pred ------------------------eEEEEEcCCCH-HHHHHHHHH---------------------cCCCCcEEECCCcc
Confidence 57888898874 455555432 27788999999999
Q ss_pred hHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhccCccEEEEC-CCCccHHHHHHHHHHhhcCH
Q 004942 616 RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHP-PGHPGAQVLAQNLRYLLKNP 694 (722)
Q Consensus 616 dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g~tGlLvp-~~d~~~e~LA~aI~~LL~np 694 (722)
++.++|+.||++|+||. .|+||++++||||||+|||+|+.||..|++.++.+|++++ ++|+ ++|+++|..+++|+
T Consensus 263 ~~~~~~~~ad~~v~ps~--~e~~~~~~~Ea~a~G~Pvi~~~~~~~~e~i~~~~~g~~~~~~~~~--~~l~~~i~~l~~~~ 338 (374)
T 2iw1_A 263 DVSELMAAADLLLHPAY--QEAAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFSQ--EQLNEVLRKALTQS 338 (374)
T ss_dssp CHHHHHHHCSEEEECCS--CCSSCHHHHHHHHHTCCEEEETTSTTTHHHHHHTCEEEECSSCCH--HHHHHHHHHHHHCH
T ss_pred cHHHHHHhcCEEEeccc--cCCcccHHHHHHHCCCCEEEecCCCchhhhccCCceEEeCCCCCH--HHHHHHHHHHHcCh
Confidence 99999999999999997 8999999999999999999999999999999999999998 7888 99999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHH
Q 004942 695 SVRERMAMEGRKKSNGLAERHSLGRY 720 (722)
Q Consensus 695 ~~r~~mg~~grk~ve~~~~~~~~~~Y 720 (722)
+.+++|++++++.+++++|....+++
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (374)
T 2iw1_A 339 PLRMAWAENARHYADTQDLYSLPEKA 364 (374)
T ss_dssp HHHHHHHHHHHHHHHHSCCSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999999988666665554
No 8
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=100.00 E-value=7.1e-34 Score=307.15 Aligned_cols=351 Identities=17% Similarity=0.176 Sum_probs=249.8
Q ss_pred cEEEEEeCCC----CCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHH----------------------HhCCcE
Q 004942 243 RKFILIFHEL----SMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPEL----------------------ARRKIK 296 (722)
Q Consensus 243 kkillI~hel----s~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el----------------------~~~gI~ 296 (722)
+||++|++++ ..||++..+.+||++|.+.||+|+|+++...+ ..... ...|++
T Consensus 1 MkIl~v~~~~~P~~~~GG~~~~~~~la~~L~~~G~~V~vi~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~ 79 (485)
T 1rzu_A 1 MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPA-VKAAVTDPVKCFEFTDLLGEKADLLEVQHERLD 79 (485)
T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECCHH-HHHHCCSCEEEEEESCSSSCCEEEEEEEETTEE
T ss_pred CeEEEEeeeeccccccccHHHHHHHHHHHHHHcCCeEEEEeccccc-ccccccccceeEEEEEecCCeEEEEEEEecCce
Confidence 3799999977 47999999999999999999999999965321 11110 136888
Q ss_pred EEEcCCcc--------------------------------chh----hhcCccEEEECCchhhHhHHHHHHhccCCCccE
Q 004942 297 VLEDRGEP--------------------------------SFK----TSMKADLVIAGSAVCATWIDQYITRFPAGGSQV 340 (722)
Q Consensus 297 Vl~~~~~~--------------------------------~~~----~~~k~DlVia~Sav~~~wi~~~i~~~~~g~~~i 340 (722)
++..+... .+. +..+||+||+++.. ..++..++........++
T Consensus 80 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiIh~~~~~-~~~~~~~~~~~~~~~~p~ 158 (485)
T 1rzu_A 80 LLILDAPAYYERSGGPYLGQTGKDYPDNWKRFAALSLAAARIGAGVLPGWRPDMVHAHDWQ-AAMTPVYMRYAETPEIPS 158 (485)
T ss_dssp EEEEECHHHHCSSSCSSBCTTSSBCTTHHHHHHHHHHHHHHHHTTCSSSCCCSEEEEEHHH-HTTHHHHHHHSSSCCCCE
T ss_pred EEEEeChHHhCCCccccCCcccccccchHHHHHHHHHHHHHHHHHhccCCCCCEEEecccc-hhHHHHHHhhcccCCCCE
Confidence 87653210 111 25689999888532 222333333321123447
Q ss_pred EEEEecchh----------------HhH-----------HHHHhhhccccEEEEecHHhHHHHhhHHHhhhhhccCCC-c
Q 004942 341 VWWIMENRR----------------EYF-----------DRAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQP-A 392 (722)
Q Consensus 341 vw~I~e~r~----------------~yf-----------~~~k~~l~rvk~li~lS~~~~~~~~~~~~~~~i~l~~~~-~ 392 (722)
++.+|.... .++ ...+..+.+++.++++|+...+...... ++... .
T Consensus 159 v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~------~g~~~~~ 232 (485)
T 1rzu_A 159 LLTIHNIAFQGQFGANIFSKLALPAHAFGMEGIEYYNDVSFLKGGLQTATALSTVSPSYAEEILTAE------FGMGLEG 232 (485)
T ss_dssp EEEESCTTCCCEECGGGGGGSCCCGGGSSTTTTEETTEEEHHHHHHHHCSEEEESCHHHHHHTTSHH------HHTTCHH
T ss_pred EEEecCccccCCCCHHHHhhcCCChhhcccccccccccccHHHHHHhhcCEEEecCHhHHHHHhccc------cCcchHH
Confidence 788775310 000 0112334568889999998644311100 01000 0
Q ss_pred ccccCCCcccceEEeecCCCCCCCCCchhHH-----------HHhhhhHHHHHHHhCCCCC-CEEEEEEecCCCCCCHHH
Q 004942 393 VVPLSVNDELAFVAGFTCSLNTPTSSPEKMR-----------EKRNLLRDSVRKEMGLTDQ-DMLVLSLSSINPGKGQLL 460 (722)
Q Consensus 393 vv~l~v~~~~~~v~vIpngid~~~f~~~~~~-----------ekr~~~r~~~R~elgl~~~-~~lIl~vGri~~~Kg~~~ 460 (722)
+.+. . ...+.+||||+|++.|.+.... +.+...+..+|+++|++++ +++|+++||+.+.||++.
T Consensus 233 ~~~~--~--~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~vGrl~~~Kg~~~ 308 (485)
T 1rzu_A 233 VIGS--R--AHVLHGIVNGIDADVWNPATDHLIHDNYSAANLKNRALNKKAVAEHFRIDDDGSPLFCVISRLTWQKGIDL 308 (485)
T ss_dssp HHHT--T--GGGEEECCCCBCTTTSCTTTCTTSSSCCBTTBCTTHHHHHHHHHHHHTCCCSSSCEEEEESCBSTTTTHHH
T ss_pred HHHh--h--cCCceEEcCCCcccccCCcccccccccccccchhhHHHhHHHHHHhcCCCCCCCeEEEEEccCccccCHHH
Confidence 0000 0 1235899999999988765321 0111134778999999875 679999999999999999
Q ss_pred HHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCcccccCCCCC
Q 004942 461 LVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPS 540 (722)
Q Consensus 461 LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (722)
|++|+..+.+. +
T Consensus 309 li~a~~~l~~~--~------------------------------------------------------------------ 320 (485)
T 1rzu_A 309 MAEAVDEIVSL--G------------------------------------------------------------------ 320 (485)
T ss_dssp HHTTHHHHHHT--T------------------------------------------------------------------
T ss_pred HHHHHHHHHhc--C------------------------------------------------------------------
Confidence 99999999652 2
Q ss_pred cccccCCCCccccCCcccceeEEEcCCchh--HHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEE-eCCchhh-
Q 004942 541 LFTSIGNTDAVSFGSGHLRRKVLSKSDGKQ--QQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAML-WTPATTR- 616 (722)
Q Consensus 541 ~~~~~~~~~~~~~g~~~~~~~lli~G~G~~--~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~-f~G~~~d- 616 (722)
++|+++|+|+. .+.++.++... .++|. |+|...+
T Consensus 321 -------------------~~l~ivG~g~~~~~~~l~~~~~~~-----------------------~~~v~~~~g~~~~~ 358 (485)
T 1rzu_A 321 -------------------GRLVVLGAGDVALEGALLAAASRH-----------------------HGRVGVAIGYNEPL 358 (485)
T ss_dssp -------------------CEEEEEECBCHHHHHHHHHHHHHT-----------------------TTTEEEEESCCHHH
T ss_pred -------------------ceEEEEeCCchHHHHHHHHHHHhC-----------------------CCcEEEecCCCHHH
Confidence 46888999863 45555555322 25786 7898755
Q ss_pred HHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhccC---------ccEEEECCCCccHHHHHHHH
Q 004942 617 VASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHN---------VTGLLHPPGHPGAQVLAQNL 687 (722)
Q Consensus 617 v~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g---------~tGlLvp~~d~~~e~LA~aI 687 (722)
+..+|++||++|+||. .|+||++++||||||+|||+|+.||++|++.++ .+|++++++|+ ++|+++|
T Consensus 359 ~~~~~~~adv~v~pS~--~E~~~~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~--~~la~~i 434 (485)
T 1rzu_A 359 SHLMQAGCDAIIIPSR--FEPCGLTQLYALRYGCIPVVARTGGLADTVIDANHAALASKAATGVQFSPVTL--DGLKQAI 434 (485)
T ss_dssp HHHHHHHCSEEEECCS--CCSSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEESSCSH--HHHHHHH
T ss_pred HHHHHhcCCEEEECcc--cCCCCHHHHHHHHCCCCEEEeCCCChhheecccccccccccCCcceEeCCCCH--HHHHHHH
Confidence 5899999999999997 899999999999999999999999999999998 89999999998 9999999
Q ss_pred HHhh---cCHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 004942 688 RYLL---KNPSVRERMAMEGRKKSNGLAERHSLGRYC 721 (722)
Q Consensus 688 ~~LL---~np~~r~~mg~~grk~ve~~~~~~~~~~Y~ 721 (722)
..++ +|++.+++|++++++ ++|+|+.++++|.
T Consensus 435 ~~ll~~~~~~~~~~~~~~~~~~--~~fs~~~~~~~~~ 469 (485)
T 1rzu_A 435 RRTVRYYHDPKLWTQMQKLGMK--SDVSWEKSAGLYA 469 (485)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHT--CCCBHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHH--HhCChHHHHHHHH
Confidence 9999 899999999999975 6799999999885
No 9
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=100.00 E-value=2.8e-33 Score=302.41 Aligned_cols=352 Identities=14% Similarity=0.141 Sum_probs=249.3
Q ss_pred cEEEEEeCCC----CCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhH------------------H---HhCCcEE
Q 004942 243 RKFILIFHEL----SMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPE------------------L---ARRKIKV 297 (722)
Q Consensus 243 kkillI~hel----s~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~e------------------l---~~~gI~V 297 (722)
+||++|++++ ..||++..+.+||++|.+.||+|+|+++...+ .... + ...|+++
T Consensus 1 MkIl~v~~~~~P~~~~GG~~~~~~~la~~L~~~G~~V~vi~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v 79 (485)
T 2qzs_A 1 MQVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAFPD-IRRGVTDAQVVSRRDTFAGHITLLFGHYNGVGI 79 (485)
T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHHTTCEEEEEEECCHH-HHHHCTTCEEEEEECCTTCCEEEEEEEETTEEE
T ss_pred CeEEEEeeeccccccCCcHHHHHHHHHHHHHHcCCEEEEEecCccc-cccccccceeEEEecccCCcEEEEEEEECCcEE
Confidence 4799999877 47999999999999999999999999965321 1111 0 0267888
Q ss_pred EEcCCc-----------------------------c---chhh----hcCccEEEECCchhhHhHHHHHHhccCCCccEE
Q 004942 298 LEDRGE-----------------------------P---SFKT----SMKADLVIAGSAVCATWIDQYITRFPAGGSQVV 341 (722)
Q Consensus 298 l~~~~~-----------------------------~---~~~~----~~k~DlVia~Sav~~~wi~~~i~~~~~g~~~iv 341 (722)
+..+.. . .+.+ ..+||+||+++... .++..++.....+ .+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Divh~~~~~~-~~~~~~~~~~~~~-~p~v 157 (485)
T 2qzs_A 80 YLIDAPHLYDRPGSPYHDTNLFAYTDNVLRFALLGWVGAEMASGLDPFWRPDVVHAHDWHA-GLAPAYLAARGRP-AKSV 157 (485)
T ss_dssp EEEECHHHHCCSSCSSBCTTSCBCTTHHHHHHHHHHHHHHHTTTSSTTCCCSEEEEETGGG-TTHHHHHHHTTCS-SEEE
T ss_pred EEEeChhhccCCCCccCCcccCCCCchHHHHHHHHHHHHHHHHHhccCCCCCEEEeeccch-hHHHHHHhhccCC-CCEE
Confidence 765320 0 1111 26899999987432 2333333322233 4477
Q ss_pred EEEecchhH----------------hH-----------HHHHhhhccccEEEEecHHhHHHHhhHHHhhhhhccCCC-cc
Q 004942 342 WWIMENRRE----------------YF-----------DRAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQP-AV 393 (722)
Q Consensus 342 w~I~e~r~~----------------yf-----------~~~k~~l~rvk~li~lS~~~~~~~~~~~~~~~i~l~~~~-~v 393 (722)
+++|..... ++ ...+..+..++.++++|+...+..... .++... .+
T Consensus 158 ~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~------~~~~~~~~~ 231 (485)
T 2qzs_A 158 FTVHNLAYQGMFYAHHMNDIQLPWSFFNIHGLEFNGQISFLKAGLYYADHITAVSPTYAREITEP------QFAYGMEGL 231 (485)
T ss_dssp EEESCTTCCCEEEGGGGGTTTCCGGGCSTTTTEETTEEEHHHHHHHHCSEEEESSHHHHHHTTSH------HHHTTCHHH
T ss_pred EEecCccccCCCCHHHHHhcCCCchhcccccccccccccHHHHHHHhcCeEEecCHHHHHHHhcc------ccCcchHHH
Confidence 877753100 00 011233455888999998864421100 001000 00
Q ss_pred cccCCCcccceEEeecCCCCCCCCCchhHH-----------HHhhhhHHHHHHHhCCCC--CCEEEEEEecCCCCCCHHH
Q 004942 394 VPLSVNDELAFVAGFTCSLNTPTSSPEKMR-----------EKRNLLRDSVRKEMGLTD--QDMLVLSLSSINPGKGQLL 460 (722)
Q Consensus 394 v~l~v~~~~~~v~vIpngid~~~f~~~~~~-----------ekr~~~r~~~R~elgl~~--~~~lIl~vGri~~~Kg~~~ 460 (722)
... ......+.+||||+|++.|.+.... +.+...+..+|+++|+++ +.++|+++||+.+.||++.
T Consensus 232 ~~~--~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~vGrl~~~Kg~~~ 309 (485)
T 2qzs_A 232 LQQ--RHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENKRQLQIAMGLKVDDKVPLFAVVSRLTSQKGLDL 309 (485)
T ss_dssp HHH--HHHTTCEEECCCCCCTTTSCTTTCTTSSSCCCTTCGGGGHHHHHHHHHHHTCCCCTTSCEEEEEEEESGGGCHHH
T ss_pred HHh--hccCCceEEEecCCCccccCccccccccccccccchhHHHHhHHHHHHHcCCCCCCCCeEEEEeccCccccCHHH
Confidence 000 0000235899999999988765310 011123577899999986 6789999999999999999
Q ss_pred HHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCcccccCCCCC
Q 004942 461 LVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPS 540 (722)
Q Consensus 461 LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (722)
|++|++.+.+. +
T Consensus 310 li~a~~~l~~~--~------------------------------------------------------------------ 321 (485)
T 2qzs_A 310 VLEALPGLLEQ--G------------------------------------------------------------------ 321 (485)
T ss_dssp HHHHHHHHHHT--T------------------------------------------------------------------
T ss_pred HHHHHHHHhhC--C------------------------------------------------------------------
Confidence 99999999652 2
Q ss_pred cccccCCCCccccCCcccceeEEEcCCch--hHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEE-eCCchhh-
Q 004942 541 LFTSIGNTDAVSFGSGHLRRKVLSKSDGK--QQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAML-WTPATTR- 616 (722)
Q Consensus 541 ~~~~~~~~~~~~~g~~~~~~~lli~G~G~--~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~-f~G~~~d- 616 (722)
++|+++|+|+ ..+.++.++... + ++|. |+|...+
T Consensus 322 -------------------~~l~ivG~g~~~~~~~l~~~~~~~---------------------~--~~v~~~~g~~~~~ 359 (485)
T 2qzs_A 322 -------------------GQLALLGAGDPVLQEGFLAAAAEY---------------------P--GQVGVQIGYHEAF 359 (485)
T ss_dssp -------------------CEEEEEEEECHHHHHHHHHHHHHS---------------------T--TTEEEEESCCHHH
T ss_pred -------------------cEEEEEeCCchHHHHHHHHHHHhC---------------------C--CcEEEeCCCCHHH
Confidence 4688889986 345555555322 2 5785 8898644
Q ss_pred HHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhccC---------ccEEEECCCCccHHHHHHHH
Q 004942 617 VASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHN---------VTGLLHPPGHPGAQVLAQNL 687 (722)
Q Consensus 617 v~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g---------~tGlLvp~~d~~~e~LA~aI 687 (722)
+..+|++||++|+||. .|+||++++||||||+|||+|+.||.+|++.++ .+|++++++|+ ++|+++|
T Consensus 360 ~~~~~~~adv~v~pS~--~E~~g~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~--~~la~~i 435 (485)
T 2qzs_A 360 SHRIMGGADVILVPSR--FEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDCSLENLADGVASGFVFEDSNA--WSLLRAI 435 (485)
T ss_dssp HHHHHHHCSEEEECCS--CCSSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEECSSSH--HHHHHHH
T ss_pred HHHHHHhCCEEEECCc--cCCCcHHHHHHHHCCCCEEECCCCCccceeccCccccccccccceEEECCCCH--HHHHHHH
Confidence 5899999999999997 899999999999999999999999999999998 89999999998 9999999
Q ss_pred HHhh---cCHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 004942 688 RYLL---KNPSVRERMAMEGRKKSNGLAERHSLGRYC 721 (722)
Q Consensus 688 ~~LL---~np~~r~~mg~~grk~ve~~~~~~~~~~Y~ 721 (722)
..++ +|++.+++|++++++ ++|+|+.++++|.
T Consensus 436 ~~ll~~~~~~~~~~~~~~~~~~--~~fs~~~~~~~~~ 470 (485)
T 2qzs_A 436 RRAFVLWSRPSLWRFVQRQAMA--MDFSWQVAAKSYR 470 (485)
T ss_dssp HHHHHHHTSHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh--hcCCHHHHHHHHH
Confidence 9999 799999999999975 6799999999885
No 10
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=100.00 E-value=3.3e-33 Score=294.73 Aligned_cols=332 Identities=17% Similarity=0.184 Sum_probs=238.5
Q ss_pred cEEEEEeCCC-CCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCCh-------hHHHhCCcEEEE-cCCc----cchhhh
Q 004942 243 RKFILIFHEL-SMTGAPLSMMELATELLSCGATVSAVVLSKRGGLM-------PELARRKIKVLE-DRGE----PSFKTS 309 (722)
Q Consensus 243 kkillI~hel-s~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~-------~el~~~gI~Vl~-~~~~----~~~~~~ 309 (722)
+||+++++.. ..||++..+.+||++|.+. |+|.+++....|... .......+..+. .... .+....
T Consensus 1 MkI~~v~~~~p~~gG~~~~~~~l~~~L~~~-~~V~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 79 (413)
T 3oy2_A 1 MKLIIVGAHSSVPSGYGRVMRAIVPRISKA-HEVIVFGIHAFGRSVHANIEEFDAQTAEHVRGLNEQGFYYSGLSEFIDV 79 (413)
T ss_dssp CEEEEEEECTTCCSHHHHHHHHHHHHHTTT-SEEEEEEESCCSCCSCSSSEEEEHHHHHHHTTCCSTTCCHHHHHHHHHH
T ss_pred CeEEEecCCCCCCCCHHHHHHHHHHHHHhc-CCeEEEeecCCCcccccccccCCccccccccccccccchHHHHHHHHHh
Confidence 3788887655 5689999999999999999 999999976654211 000000000000 0000 133347
Q ss_pred cCccEEEECCchhhHhHHHHHHhccCC--CccEEEEEecchhHhHHHHHhhhcccc--EEEEecHHhHHHHhhHHHhhhh
Q 004942 310 MKADLVIAGSAVCATWIDQYITRFPAG--GSQVVWWIMENRREYFDRAKLVLDRVK--LLVFLSESQTKQWLTWCEEEKL 385 (722)
Q Consensus 310 ~k~DlVia~Sav~~~wi~~~i~~~~~g--~~~ivw~I~e~r~~yf~~~k~~l~rvk--~li~lS~~~~~~~~~~~~~~~i 385 (722)
.+||+||+++... ++...+...... ...++.+.+.............+.+.+ .++++|+...+. . .
T Consensus 80 ~~~Div~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~S~~~~~~----~----~ 149 (413)
T 3oy2_A 80 HKPDIVMIYNDPI--VIGNYLLAMGKCSHRTKIVLYVDLVSKNIRENLWWIFSHPKVVGVMAMSKCWISD----I----C 149 (413)
T ss_dssp HCCSEEEEEECHH--HHHHHHHHGGGCCSCCEEEEEECCCSBSCCGGGGGGGGCTTEEEEEESSTHHHHH----H----H
T ss_pred cCCCEEEEcchHH--HHHHHHHHhccCCCCCceeeeccccchhhHHHHHHHHhccCCceEEEcCHHHHHH----H----H
Confidence 7999999883221 222222222211 122333333211111111234456655 899999986443 2 1
Q ss_pred hccCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCCC--CCEEEEEEecCCCCCCHHHHHH
Q 004942 386 KLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTD--QDMLVLSLSSINPGKGQLLLVE 463 (722)
Q Consensus 386 ~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~~--~~~lIl~vGri~~~Kg~~~Lle 463 (722)
+++. + ..+.+||||+|.+.|. ..|+++++++ +.++|+++|++.+.||++.+++
T Consensus 150 ~~~~-~-----------~~~~vi~ngvd~~~~~-------------~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~li~ 204 (413)
T 3oy2_A 150 NYGC-K-----------VPINIVSHFVDTKTIY-------------DARKLVGLSEYNDDVLFLNMNRNTARKRLDIYVL 204 (413)
T ss_dssp HTTC-C-----------SCEEECCCCCCCCCCT-------------THHHHTTCGGGTTSEEEECCSCSSGGGTHHHHHH
T ss_pred HcCC-C-----------CceEEeCCCCCHHHHH-------------HHHHhcCCCcccCceEEEEcCCCchhcCcHHHHH
Confidence 1121 1 1358999999999881 1356788877 7899999999999999999999
Q ss_pred HHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCcccccCCCCCccc
Q 004942 464 SAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFT 543 (722)
Q Consensus 464 A~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (722)
|+..+.++.++
T Consensus 205 a~~~l~~~~~~--------------------------------------------------------------------- 215 (413)
T 3oy2_A 205 AAARFISKYPD--------------------------------------------------------------------- 215 (413)
T ss_dssp HHHHHHHHCTT---------------------------------------------------------------------
T ss_pred HHHHHHHhCCC---------------------------------------------------------------------
Confidence 99999887766
Q ss_pred ccCCCCccccCCcccceeEEEcCCchhH------HHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCc-------EEe
Q 004942 544 SIGNTDAVSFGSGHLRRKVLSKSDGKQQ------QALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKA-------MLW 610 (722)
Q Consensus 544 ~~~~~~~~~~g~~~~~~~lli~G~G~~~------~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~-------V~f 610 (722)
.+|+++|+|+.. +.++.++. .+++.++ |.|
T Consensus 216 ----------------~~l~ivG~g~~~~~~~l~~~~~~~~~---------------------~~~l~~~v~~l~~vv~~ 258 (413)
T 3oy2_A 216 ----------------AKVRFLCNSHHESKFDLHSIALRELV---------------------ASGVDNVFTHLNKIMIN 258 (413)
T ss_dssp ----------------CCEEEEEECCTTCSCCHHHHHHHHHH---------------------HHTCSCHHHHHTTEEEE
T ss_pred ----------------cEEEEEeCCcccchhhHHHHHHHHHH---------------------HcCcccccccccceeec
Confidence 457778888654 44444443 3377776 888
Q ss_pred CCch--hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhccCcc---------------EE--
Q 004942 611 TPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVT---------------GL-- 671 (722)
Q Consensus 611 ~G~~--~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g~t---------------Gl-- 671 (722)
+|.+ +++.++|++||++|+||. .|+||++++||||||+|||+|+.||.+|++.++.+ |+
T Consensus 259 ~g~~~~~~~~~~~~~adv~v~pS~--~E~~~~~~lEAma~G~PvI~s~~~g~~e~v~~~~~~~i~~~~~~~~~~~~G~~g 336 (413)
T 3oy2_A 259 RTVLTDERVDMMYNACDVIVNCSS--GEGFGLCSAEGAVLGKPLIISAVGGADDYFSGDCVYKIKPSAWISVDDRDGIGG 336 (413)
T ss_dssp CSCCCHHHHHHHHHHCSEEEECCS--CCSSCHHHHHHHTTTCCEEEECCHHHHHHSCTTTSEEECCCEEEECTTTCSSCC
T ss_pred cCcCCHHHHHHHHHhCCEEEeCCC--cCCCCcHHHHHHHcCCCEEEcCCCChHHHHccCcccccccccccccccccCcce
Confidence 8985 589999999999999997 89999999999999999999999999999999887 99
Q ss_pred EECCCCccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH-hhcHHHHHHHHH
Q 004942 672 LHPPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKSN-GLAERHSLGRYC 721 (722)
Q Consensus 672 Lvp~~d~~~e~LA~aI~~LL~np~~r~~mg~~grk~ve-~~~~~~~~~~Y~ 721 (722)
+++++|+ ++|+++| .+++|++.+++|++++++.++ +|+|+.++++|.
T Consensus 337 l~~~~d~--~~la~~i-~l~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~ 384 (413)
T 3oy2_A 337 IEGIIDV--DDLVEAF-TFFKDEKNRKEYGKRVQDFVKTKPTWDDISSDII 384 (413)
T ss_dssp EEEECCH--HHHHHHH-HHTTSHHHHHHHHHHHHHHHTTSCCHHHHHHHHH
T ss_pred eeCCCCH--HHHHHHH-HHhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999998 9999999 999999999999999999995 699999999885
No 11
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=100.00 E-value=1.8e-32 Score=286.04 Aligned_cols=330 Identities=17% Similarity=0.205 Sum_probs=241.4
Q ss_pred ccEEEEEeCCC--CCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHH-hCCcEEEEcCCc-------------c-
Q 004942 242 SRKFILIFHEL--SMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELA-RRKIKVLEDRGE-------------P- 304 (722)
Q Consensus 242 ~kkillI~hel--s~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~-~~gI~Vl~~~~~-------------~- 304 (722)
++||+++++.+ ..||++..+.+|+++|.+.||+|.+++........+... ..+ +++..+.. .
T Consensus 20 ~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 98 (406)
T 2gek_A 20 HMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDAGHEVSVLAPASPHVKLPDYVVSGG-KAVPIPYNGSVARLRFGPATHRK 98 (406)
T ss_dssp -CEEEEECSSCTTSCCHHHHHHHHHHHHHHHTTCEEEEEESCCTTSCCCTTEEECC-CCC------------CCHHHHHH
T ss_pred cceEEEEeccCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCccccCCcccccCC-cEEeccccCCcccccccHHHHHH
Confidence 36899999875 348999999999999999999999999655433111111 111 22222110 0
Q ss_pred --chhhhcCccEEEECCchhhHhHHHHHHhccCCCccEEEEEecchhH--hHHH----HHhhhccccEEEEecHHhHHHH
Q 004942 305 --SFKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRRE--YFDR----AKLVLDRVKLLVFLSESQTKQW 376 (722)
Q Consensus 305 --~~~~~~k~DlVia~Sav~~~wi~~~i~~~~~g~~~ivw~I~e~r~~--yf~~----~k~~l~rvk~li~lS~~~~~~~ 376 (722)
++.+..+||+||+++.....+ ...+... .+ .++++++|..... .... ....+.+++.++++|+...+.
T Consensus 99 l~~~l~~~~~Dii~~~~~~~~~~-~~~~~~~-~~-~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~- 174 (406)
T 2gek_A 99 VKKWIAEGDFDVLHIHEPNAPSL-SMLALQA-AE-GPIVATFHTSTTKSLTLSVFQGILRPYHEKIIGRIAVSDLARRW- 174 (406)
T ss_dssp HHHHHHHHCCSEEEEECCCSSSH-HHHHHHH-EE-SSEEEEECCCCCSHHHHHHHHSTTHHHHTTCSEEEESSHHHHHH-
T ss_pred HHHHHHhcCCCEEEECCccchHH-HHHHHHh-cC-CCEEEEEcCcchhhhhHHHHHHHHHHHHhhCCEEEECCHHHHHH-
Confidence 233467999999987554333 2222222 23 3477777753211 1111 113456689999999886443
Q ss_pred hhHHHhhhhhccCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCCCCCEEEEEEecC-CCC
Q 004942 377 LTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSI-NPG 455 (722)
Q Consensus 377 ~~~~~~~~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~~~~~lIl~vGri-~~~ 455 (722)
... .++ . ..+ +||||+|.+.|.+... ..++..+.+.|+++|++ .+.
T Consensus 175 ---~~~---~~~--~-----------~~~-vi~~~v~~~~~~~~~~-------------~~~~~~~~~~i~~~G~~~~~~ 221 (406)
T 2gek_A 175 ---QME---ALG--S-----------DAV-EIPNGVDVASFADAPL-------------LDGYPREGRTVLFLGRYDEPR 221 (406)
T ss_dssp ---HHH---HHS--S-----------CEE-ECCCCBCHHHHHTCCC-------------CTTCSCSSCEEEEESCTTSGG
T ss_pred ---HHH---hcC--C-----------CcE-EecCCCChhhcCCCch-------------hhhccCCCeEEEEEeeeCccc
Confidence 110 111 1 136 8999998765533321 11233356799999999 999
Q ss_pred CCHHHHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCccccc
Q 004942 456 KGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKN 535 (722)
Q Consensus 456 Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (722)
||++.+++|+..+.++.++
T Consensus 222 Kg~~~li~a~~~l~~~~~~------------------------------------------------------------- 240 (406)
T 2gek_A 222 KGMAVLLAALPKLVARFPD------------------------------------------------------------- 240 (406)
T ss_dssp GCHHHHHHHHHHHHTTSTT-------------------------------------------------------------
T ss_pred cCHHHHHHHHHHHHHHCCC-------------------------------------------------------------
Confidence 9999999999999776554
Q ss_pred CCCCCcccccCCCCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEeCCch-
Q 004942 536 LLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPAT- 614 (722)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~G~~- 614 (722)
++|+++|+|+. +.++.++. .+.++|.|+|.+
T Consensus 241 ------------------------~~l~i~G~~~~-~~l~~~~~-----------------------~~~~~v~~~g~~~ 272 (406)
T 2gek_A 241 ------------------------VEILIVGRGDE-DELREQAG-----------------------DLAGHLRFLGQVD 272 (406)
T ss_dssp ------------------------CEEEEESCSCH-HHHHHHTG-----------------------GGGGGEEECCSCC
T ss_pred ------------------------eEEEEEcCCcH-HHHHHHHH-----------------------hccCcEEEEecCC
Confidence 57889999988 77776663 225689999988
Q ss_pred -hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhccCccEEEECCCCccHHHHHHHHHHhhcC
Q 004942 615 -TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKN 693 (722)
Q Consensus 615 -~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g~tGlLvp~~d~~~e~LA~aI~~LL~n 693 (722)
.++.++|+.||++|+||.. .|+||++++||||||+|||+++.||..|++.++.+|++++++|+ ++|+++|..+++|
T Consensus 273 ~~~~~~~~~~adv~v~ps~~-~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~~~~~g~~~~~~d~--~~l~~~i~~l~~~ 349 (406)
T 2gek_A 273 DATKASAMRSADVYCAPHLG-GESFGIVLVEAMAAGTAVVASDLDAFRRVLADGDAGRLVPVDDA--DGMAAALIGILED 349 (406)
T ss_dssp HHHHHHHHHHSSEEEECCCS-CCSSCHHHHHHHHHTCEEEECCCHHHHHHHTTTTSSEECCTTCH--HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCEEEecCCC-CCCCchHHHHHHHcCCCEEEecCCcHHHHhcCCCceEEeCCCCH--HHHHHHHHHHHcC
Confidence 4579999999999999842 89999999999999999999999999999999999999999998 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 004942 694 PSVRERMAMEGRKKSNGLAERHSLGRYC 721 (722)
Q Consensus 694 p~~r~~mg~~grk~ve~~~~~~~~~~Y~ 721 (722)
++.+++|++++++.+++|+|+..+++|.
T Consensus 350 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 377 (406)
T 2gek_A 350 DQLRAGYVARASERVHRYDWSVVSAQIM 377 (406)
T ss_dssp HHHHHHHHHHHHHHGGGGBHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999999999999999998875
No 12
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=99.98 E-value=2.8e-31 Score=273.74 Aligned_cols=298 Identities=18% Similarity=0.138 Sum_probs=225.9
Q ss_pred ccccEEEEEeCC--------------CCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCcc-
Q 004942 240 VWSRKFILIFHE--------------LSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP- 304 (722)
Q Consensus 240 ~~~kkillI~he--------------ls~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~- 304 (722)
|.++||+++++. ...||++..+.+|+++|.+.||+|++++....... ..+++++......
T Consensus 1 M~~mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~-----~~~~~~~~~~~~~~ 75 (342)
T 2iuy_A 1 MRPLKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLELGHEVFLLGAPGSPAG-----RPGLTVVPAGEPEE 75 (342)
T ss_dssp --CCEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHTTCEEEEESCTTSCCC-----STTEEECSCCSHHH
T ss_pred CCccEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHHcCCeEEEEecCCCCCC-----CCcceeccCCcHHH
Confidence 455799999998 25699999999999999999999999985543222 2466665443322
Q ss_pred --chhhhcCccEEEECCchhhHhHHHHHHhccCCCccEEEEEecchhHhHHHHHhhhccccEEEEecHHhHHHHhhHHHh
Q 004942 305 --SFKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFDRAKLVLDRVKLLVFLSESQTKQWLTWCEE 382 (722)
Q Consensus 305 --~~~~~~k~DlVia~Sav~~~wi~~~i~~~~~g~~~ivw~I~e~r~~yf~~~k~~l~rvk~li~lS~~~~~~~~~~~~~ 382 (722)
++.++.+||+||+++.....+. ....+.+ ++++|.....+ ...+.++++|+...+. .
T Consensus 76 l~~~l~~~~~Dvi~~~~~~~~~~~-----~~~~~~p--v~~~h~~~~~~--------~~~d~ii~~S~~~~~~----~-- 134 (342)
T 2iuy_A 76 IERWLRTADVDVVHDHSGGVIGPA-----GLPPGTA--FISSHHFTTRP--------VNPVGCTYSSRAQRAH----C-- 134 (342)
T ss_dssp HHHHHHHCCCSEEEECSSSSSCST-----TCCTTCE--EEEEECSSSBC--------SCCTTEEESCHHHHHH----T--
T ss_pred HHHHHHhcCCCEEEECCchhhHHH-----HhhcCCC--EEEecCCCCCc--------ccceEEEEcCHHHHHH----H--
Confidence 3444779999999875432211 2223334 67776543221 1156689999886432 1
Q ss_pred hhhhccCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHH
Q 004942 383 EKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLV 462 (722)
Q Consensus 383 ~~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~~~~~lIl~vGri~~~Kg~~~Ll 462 (722)
.. . .+ +.+||||+|.+.|.+... .. .++..|+++|++.+.||++.++
T Consensus 135 ---~~---~-------~~----~~vi~ngvd~~~~~~~~~---------------~~-~~~~~i~~vG~~~~~Kg~~~li 181 (342)
T 2iuy_A 135 ---GG---G-------DD----APVIPIPVDPARYRSAAD---------------QV-AKEDFLLFMGRVSPHKGALEAA 181 (342)
T ss_dssp ---TC---C-------TT----SCBCCCCBCGGGSCCSTT---------------CC-CCCSCEEEESCCCGGGTHHHHH
T ss_pred ---hc---C-------Cc----eEEEcCCCChhhcCcccc---------------cC-CCCCEEEEEeccccccCHHHHH
Confidence 11 1 12 378999999888866542 11 2445799999999999999999
Q ss_pred HHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCcccccCCCCCcc
Q 004942 463 ESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLF 542 (722)
Q Consensus 463 eA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (722)
+|++.+ +
T Consensus 182 ~a~~~~-----~-------------------------------------------------------------------- 188 (342)
T 2iuy_A 182 AFAHAC-----G-------------------------------------------------------------------- 188 (342)
T ss_dssp HHHHHH-----T--------------------------------------------------------------------
T ss_pred HHHHhc-----C--------------------------------------------------------------------
Confidence 999887 2
Q ss_pred cccCCCCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEeCCchh--hHHHH
Q 004942 543 TSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATT--RVASL 620 (722)
Q Consensus 543 ~~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~G~~~--dv~~l 620 (722)
++|+++|+|+..+.++.++... + ++|.|+|.++ ++.++
T Consensus 189 -----------------~~l~i~G~g~~~~~l~~~~~~~---------------------~--~~v~~~g~~~~~~l~~~ 228 (342)
T 2iuy_A 189 -----------------RRLVLAGPAWEPEYFDEITRRY---------------------G--STVEPIGEVGGERRLDL 228 (342)
T ss_dssp -----------------CCEEEESCCCCHHHHHHHHHHH---------------------T--TTEEECCCCCHHHHHHH
T ss_pred -----------------cEEEEEeCcccHHHHHHHHHHh---------------------C--CCEEEeccCCHHHHHHH
Confidence 3578889998777777766422 3 6899999885 56999
Q ss_pred HHHcCEEEEcCC---------CCCCCccHHHHHHHHhCCCEEEcCCCChhhhhcc--CccEEEECCCCccHHHHHHHHHH
Q 004942 621 YSAADVYVINSQ---------GLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEH--NVTGLLHPPGHPGAQVLAQNLRY 689 (722)
Q Consensus 621 ysaADv~V~pS~---------~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~--g~tGlLvp~~d~~~e~LA~aI~~ 689 (722)
|++||++|+||. + .|+||++++||||||+|||+|+.||..|++++ +.+|+++++ |+ ++|+++|.+
T Consensus 229 ~~~adv~v~ps~~~~~~~~~~~-~E~~~~~~~EAma~G~PvI~s~~~~~~e~~~~~~~~~g~~~~~-d~--~~l~~~i~~ 304 (342)
T 2iuy_A 229 LASAHAVLAMSQAVTGPWGGIW-CEPGATVVSEAAVSGTPVVGTGNGCLAEIVPSVGEVVGYGTDF-AP--DEARRTLAG 304 (342)
T ss_dssp HHHCSEEEECCCCCCCTTCSCC-CCCCCHHHHHHHHTTCCEEECCTTTHHHHGGGGEEECCSSSCC-CH--HHHHHHHHT
T ss_pred HHhCCEEEECCccccccccccc-ccCccHHHHHHHhcCCCEEEcCCCChHHHhcccCCCceEEcCC-CH--HHHHHHHHH
Confidence 999999999995 2 79999999999999999999999999999999 899999998 88 999999999
Q ss_pred hhcCHHHHHHHHHHHHHHH-HhhcHHHHHHHHH
Q 004942 690 LLKNPSVRERMAMEGRKKS-NGLAERHSLGRYC 721 (722)
Q Consensus 690 LL~np~~r~~mg~~grk~v-e~~~~~~~~~~Y~ 721 (722)
+++ ++++++.+ ++|+|+..+++|.
T Consensus 305 l~~--------~~~~~~~~~~~~s~~~~~~~~~ 329 (342)
T 2iuy_A 305 LPA--------SDEVRRAAVRLWGHVTIAERYV 329 (342)
T ss_dssp SCC--------HHHHHHHHHHHHBHHHHHHHHH
T ss_pred HHH--------HHHHHHHHHHhcCHHHHHHHHH
Confidence 998 66778887 6699999998875
No 13
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=99.97 E-value=8.3e-31 Score=294.30 Aligned_cols=202 Identities=18% Similarity=0.277 Sum_probs=160.0
Q ss_pred eEEeecCCCCCCCCCchh------------HHHHhhhhHHHHHHHhCCCC--CCEEEEEEecCCCCCCHHHHHHHHHHhH
Q 004942 404 FVAGFTCSLNTPTSSPEK------------MREKRNLLRDSVRKEMGLTD--QDMLVLSLSSINPGKGQLLLVESAQLMI 469 (722)
Q Consensus 404 ~v~vIpngid~~~f~~~~------------~~ekr~~~r~~~R~elgl~~--~~~lIl~vGri~~~Kg~~~LleA~~~L~ 469 (722)
.+.+|+||+|++.|.|.. ..+.+...+..+++++|++. +.++|+++||+.+.||++.|++|+..+.
T Consensus 274 ~i~~I~NGiD~~~~~p~~d~~~~~~~~~~~~~~~K~~~k~~l~~~~gl~~d~~~p~i~~vgRl~~~Kg~~~li~a~~~l~ 353 (536)
T 3vue_A 274 GITGIVNGMDVSEWDPSKDKYITAKYDATTAIEAKALNKEALQAEAGLPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELM 353 (536)
T ss_dssp SCEECCCCCCTTTSCTTTCSSSSCCCCTTTHHHHHHHHHHHHHHHTTSCCCTTSCEEEEECCBSGGGCHHHHHHHHHHHT
T ss_pred CeEEEECCcchhhcCCCCccccccccchhhhhhhhHHHHHHHHHhcCCCCCCCCcEEEEEeeccccCChHHHHHHHHHhH
Confidence 368999999999998742 12334556788999999864 4689999999999999999999999985
Q ss_pred HhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCcccccCCCCCcccccCCCC
Q 004942 470 EQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTD 549 (722)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (722)
++.
T Consensus 354 ~~~----------------------------------------------------------------------------- 356 (536)
T 3vue_A 354 QED----------------------------------------------------------------------------- 356 (536)
T ss_dssp TSS-----------------------------------------------------------------------------
T ss_pred hhC-----------------------------------------------------------------------------
Confidence 431
Q ss_pred ccccCCcccceeEEEcCCchhH--HHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEeCCch--hhHHHHHHHcC
Q 004942 550 AVSFGSGHLRRKVLSKSDGKQQ--QALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPAT--TRVASLYSAAD 625 (722)
Q Consensus 550 ~~~~g~~~~~~~lli~G~G~~~--~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~G~~--~dv~~lysaAD 625 (722)
.+++++|.|+.. ..++.+.. ++..+|.+++.. +++..+|+.||
T Consensus 357 ----------~~l~l~G~G~~~~~~~~~~~~~-----------------------~~~~~v~~~~~~~~~~~~~~~~~aD 403 (536)
T 3vue_A 357 ----------VQIVLLGTGKKKFEKLLKSMEE-----------------------KYPGKVRAVVKFNAPLAHLIMAGAD 403 (536)
T ss_dssp ----------CEEEEECCBCHHHHHHHHHHHH-----------------------HSTTTEEEECSCCHHHHHHHHHHCS
T ss_pred ----------CeEEEEeccCchHHHHHHHHHh-----------------------hcCCceEEEEeccHHHHHHHHHhhh
Confidence 245666666543 33333221 344677777643 67889999999
Q ss_pred EEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhccCccEEE----------ECCCCccHHHHHHHHHHhhc--C
Q 004942 626 VYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLL----------HPPGHPGAQVLAQNLRYLLK--N 693 (722)
Q Consensus 626 v~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g~tGlL----------vp~~d~~~e~LA~aI~~LL~--n 693 (722)
++|+||. .|+||++++||||||+|||+|++||++|+|.++.+|++ +++.|+ ++|+++|.++++ +
T Consensus 404 ~~v~PS~--~E~fgl~~lEAma~G~PvI~s~~gG~~e~V~dg~~G~~~~~~~~~g~l~~~~d~--~~la~ai~ral~~~~ 479 (536)
T 3vue_A 404 VLAVPSR--FEPCGLIQLQGMRYGTPCACASTGGLVDTVIEGKTGFHMGRLSVDCKVVEPSDV--KKVAATLKRAIKVVG 479 (536)
T ss_dssp EEEECCS--CCSSCSHHHHHHHTTCCEEECSCTHHHHHCCBTTTEEECCCCCSCTTCCCHHHH--HHHHHHHHHHHHHTT
T ss_pred eeecccc--cCCCCHHHHHHHHcCCCEEEcCCCCchheeeCCCCccccccCCCceeEECCCCH--HHHHHHHHHHHHhcC
Confidence 9999997 89999999999999999999999999999999999994 455555 999999998876 5
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 004942 694 PSVRERMAMEGRKKSNGLAERHSLGRYC 721 (722)
Q Consensus 694 p~~r~~mg~~grk~ve~~~~~~~~~~Y~ 721 (722)
.+.+++|.+++.+ ++|+|+.++++|.
T Consensus 480 ~~~~~~~~~~am~--~~fSW~~~A~~y~ 505 (536)
T 3vue_A 480 TPAYEEMVRNCMN--QDLSWKGPAKNWE 505 (536)
T ss_dssp SHHHHHHHHHHHH--SCCSSHHHHHHHH
T ss_pred cHHHHHHHHHHHH--hcCCHHHHHHHHH
Confidence 5567788776643 5699999999996
No 14
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=99.97 E-value=3.4e-30 Score=302.54 Aligned_cols=382 Identities=13% Similarity=0.165 Sum_probs=248.1
Q ss_pred hhhccccEEEEEeCCCC-----------CCcHHHHHH--------HHHHHHHhCCCEEE----EEEEcCCCC----ChhH
Q 004942 237 ARFVWSRKFILIFHELS-----------MTGAPLSMM--------ELATELLSCGATVS----AVVLSKRGG----LMPE 289 (722)
Q Consensus 237 ~~~~~~kkillI~hels-----------~gGaplsm~--------eLA~eL~s~G~~Vs----vV~ls~~g~----l~~e 289 (722)
.+.=|..+|++|+.... .||-.+.++ +||++|.++||+|+ ++|-..... ..+.
T Consensus 273 ~~~~~~~~i~~is~hg~~~~~~~lG~~dtGGq~vyV~e~~~al~~ela~~L~~~G~~V~~~V~v~Tr~~~~~~g~~y~~~ 352 (816)
T 3s28_A 273 GRVPMVFNVVILSPHGYFAQDNVLGYPDTGGQVVYILDQVRALEIEMLQRIKQQGLNIKPRILILTRLLPDAVGTTCGER 352 (816)
T ss_dssp HHSCCCCEEEEECCSSCCCSSSCTTSTTCSHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECCTTCTTSSTTSS
T ss_pred ccCCceeEEEEEcCCcccCccccCCCCCCCCceeeHHHHHHHHHHHHHHHHHHCCCccceeeEEEeCCCCCCCCCccCCc
Confidence 35556678999887653 566677888 47777888999886 777443221 1111
Q ss_pred ---HH-hCCcEEEEcCCcc-------------------chh--------h--hcCccEEEECCchhhHhHHHHHHhccCC
Q 004942 290 ---LA-RRKIKVLEDRGEP-------------------SFK--------T--SMKADLVIAGSAVCATWIDQYITRFPAG 336 (722)
Q Consensus 290 ---l~-~~gI~Vl~~~~~~-------------------~~~--------~--~~k~DlVia~Sav~~~wi~~~i~~~~~g 336 (722)
+. ..|++|+..+... .|. . ..+||+||+|... +.++...++. ..+
T Consensus 353 ~e~i~~~~gv~I~RvP~~~~~g~l~~~l~k~~L~~~L~~F~~~~l~~il~~~~~~PDVIHsH~~~-sglva~llar-~~g 430 (816)
T 3s28_A 353 LERVYDSEYCDILRVPFRTEKGIVRKWISRFEVWPYLETYTEDAAVELSKELNGKPDLIIGNYSD-GNLVASLLAH-KLG 430 (816)
T ss_dssp EEECTTCSSEEEEEECEEETTEEECSCCCTTTCGGGHHHHHHHHHHHHHHHCSSCCSEEEEEHHH-HHHHHHHHHH-HHT
T ss_pred ceeecCcCCeEEEEecCCCccccccccccHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCch-HHHHHHHHHH-HcC
Confidence 11 2478888775432 111 1 2379999887422 2222222233 234
Q ss_pred CccEEEEEecchhH-h---------H----------HHHHhhhccccEEEEecHHhHHHHhhHHHhhhhhccC-CCcc--
Q 004942 337 GSQVVWWIMENRRE-Y---------F----------DRAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRS-QPAV-- 393 (722)
Q Consensus 337 ~~~ivw~I~e~r~~-y---------f----------~~~k~~l~rvk~li~lS~~~~~~~~~~~~~~~i~l~~-~~~v-- 393 (722)
.+ +++.+|..... + + ..-...+..++.+++.|+...+.....+......... .|.+
T Consensus 431 vP-~V~T~Hsl~~~k~~~~~~~~~~~~~~y~~~~r~~aE~~~l~~AD~VIa~S~~~~~~l~~~~~~y~~~~~~~~p~Lyr 509 (816)
T 3s28_A 431 VT-QCTIAHALEKTKYPDSDIYWKKLDDKYHFSCQFTADIFAMNHTDFIITSTFQEIAGSKETVGQYESHTAFTLPGLYR 509 (816)
T ss_dssp CC-EEEECSCCHHHHSTTTTTTHHHHHHHHCHHHHHHHHHHHHHHSSEEEESCHHHHHCCSSSCCTTGGGSSEEETTTEE
T ss_pred CC-EEEEEecccccccccccchhhhHHHHHHHHHHHHHHHHHHHhCCEEEECCHHHHHHHHHHHHHhhhhhccccchhhh
Confidence 44 56666642111 0 0 0011245668999999988633100000000000000 0000
Q ss_pred cccCCCcccceEEeecCCCCCCCCCchhHHHHh-hhh----------HHHHHHHhCC--CCCCEEEEEEecCCCCCCHHH
Q 004942 394 VPLSVNDELAFVAGFTCSLNTPTSSPEKMREKR-NLL----------RDSVRKEMGL--TDQDMLVLSLSSINPGKGQLL 460 (722)
Q Consensus 394 v~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr-~~~----------r~~~R~elgl--~~~~~lIl~vGri~~~Kg~~~ 460 (722)
+.-+++.....+.+||||+|+..|.|.....+| ... ....++.+|+ ..+.++|+++||+.+.||++.
T Consensus 510 ~~~gI~~~~~ki~VIpnGVD~~~F~P~~~~~~Rl~~~~~~i~~~l~~p~~~r~~lg~l~~~~~~vIl~vGRl~~~KGid~ 589 (816)
T 3s28_A 510 VVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRLTKFHSEIEELLYSDVENKEHLCVLKDKKKPILFTMARLDRVKNLSG 589 (816)
T ss_dssp EEESCCTTCTTEEECCCCCCTTTSCCTTCTTTCCGGGHHHHHHHHHCSCCBTTEESCBSCTTSCEEEEECCCCTTTTHHH
T ss_pred cccccccCCCCEEEECCCcCHHHcCccchhhhhhhhccccccccccchhhHHHHhcccCCCCCeEEEEEccCcccCCHHH
Confidence 000111111257999999999999876532110 000 1123456676 667889999999999999999
Q ss_pred HHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCcccccCCCCC
Q 004942 461 LVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPS 540 (722)
Q Consensus 461 LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (722)
|++|+..+.+..++
T Consensus 590 LIeA~~~L~~~~~~------------------------------------------------------------------ 603 (816)
T 3s28_A 590 LVEWYGKNTRLREL------------------------------------------------------------------ 603 (816)
T ss_dssp HHHHHHHCHHHHHH------------------------------------------------------------------
T ss_pred HHHHHHHHHhhCCC------------------------------------------------------------------
Confidence 99999999765433
Q ss_pred cccccCCCCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCC-CCchhHHHHHHHHHhcCCCCCcEEeCCch-----
Q 004942 541 LFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKS-NKVPYVKEILEFLSQHSNLSKAMLWTPAT----- 614 (722)
Q Consensus 541 ~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~s-n~~~Y~~el~~~l~~~~~L~~~V~f~G~~----- 614 (722)
++|+++|+|+... +.+ ....|.+++.+ +.+.+++.++|.|+|.+
T Consensus 604 -------------------v~LvIvG~g~~~~----------~~~~e~~~~~~~L~~-li~~lgL~~~V~flG~~~~~v~ 653 (816)
T 3s28_A 604 -------------------ANLVVVGGDRRKE----------SKDNEEKAEMKKMYD-LIEEYKLNGQFRWISSQMDRVR 653 (816)
T ss_dssp -------------------CEEEEECCCTTSC----------CCCHHHHHHHHHHHH-HHHHTTCBBBEEEECCCCCHHH
T ss_pred -------------------eEEEEEeCCCccc----------ccchhhHHHHHHHHH-HHHHcCCCCcEEEccCccccCC
Confidence 4678888887200 000 00012222222 22344899999999954
Q ss_pred -hhHHHHHH-HcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhccCccEEEECCCCccHHHHHHHHHHhh-
Q 004942 615 -TRVASLYS-AADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLL- 691 (722)
Q Consensus 615 -~dv~~lys-aADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g~tGlLvp~~d~~~e~LA~aI~~LL- 691 (722)
+++..+|. +||++|+||. .|+||++++||||||+|||+|+.||+.|+|.++.+|++++++|+ ++||++|..++
T Consensus 654 ~~eL~~~~~~aaDvfV~PS~--~EgfglvllEAMA~G~PVIasd~GG~~EiV~dg~~Gllv~p~D~--e~LA~aI~~lL~ 729 (816)
T 3s28_A 654 NGELYRYICDTKGAFVQPAL--YEAFGLTVVEAMTCGLPTFATCKGGPAEIIVHGKSGFHIDPYHG--DQAADTLADFFT 729 (816)
T ss_dssp HHHHHHHHHHTTCEEEECCS--CBSSCHHHHHHHHTTCCEEEESSBTHHHHCCBTTTBEEECTTSH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCeEEEECCC--ccCccHHHHHHHHcCCCEEEeCCCChHHHHccCCcEEEeCCCCH--HHHHHHHHHHHH
Confidence 46888888 5799999997 89999999999999999999999999999999999999999998 99999997776
Q ss_pred ---cCHHHHHHHHHHHHHHH-HhhcHHHHHHHHH
Q 004942 692 ---KNPSVRERMAMEGRKKS-NGLAERHSLGRYC 721 (722)
Q Consensus 692 ---~np~~r~~mg~~grk~v-e~~~~~~~~~~Y~ 721 (722)
.|++.+++|+++|++.+ ++|+|+.++++|.
T Consensus 730 ~Ll~d~~~~~~m~~~ar~~a~~~fSwe~~a~~ll 763 (816)
T 3s28_A 730 KCKEDPSHWDEISKGGLQRIEEKYTWQIYSQRLL 763 (816)
T ss_dssp HHHHCTHHHHHHHHHHHHHHHHSCCHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 89999999999999999 6699999999885
No 15
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=99.96 E-value=1.3e-28 Score=267.13 Aligned_cols=324 Identities=12% Similarity=0.094 Sum_probs=206.0
Q ss_pred ccEEEEEeCCCCCC---cHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHH-hCCcEEEEcCCc----c-------ch
Q 004942 242 SRKFILIFHELSMT---GAPLSMMELATELLSCGATVSAVVLSKRGGLMPELA-RRKIKVLEDRGE----P-------SF 306 (722)
Q Consensus 242 ~kkillI~hels~g---Gaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~-~~gI~Vl~~~~~----~-------~~ 306 (722)
++||+++++.+..+ |+...+.+||++|.+.||+|.|++....... .... -.+......... . .+
T Consensus 46 ~mrI~~v~~~~~p~~~~GG~~~v~~la~~L~~~GheV~Vvt~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 124 (413)
T 2x0d_A 46 GKRLNLLVPSINQEHMFGGISTALKLFEQFDNKKFKKRIILTDATPNP-KDLQSFKSFKYVMPEEDKDFALQIVPFNDRY 124 (413)
T ss_dssp SCEEEEEESCCCGGGCSHHHHHHHHHHTTSCTTTCEEEEEESSCCCCH-HHHGGGTTSEECCTTCCCCCSEEEEECSCCT
T ss_pred CceEEEEeCCCCccccccHHHHHHHHHHHHHHcCCceEEEEecCCCCh-HHHHhhhccceeeccCCccccceeeeccccc
Confidence 37999999998764 7777799999999999999999996532211 1111 112222111100 0 01
Q ss_pred h---hhcCccEEEECCchhhHhHHHHH---Hhcc-CCCccEEEEEecchhHhH------HHHHhhhcccc--EEEEecHH
Q 004942 307 K---TSMKADLVIAGSAVCATWIDQYI---TRFP-AGGSQVVWWIMENRREYF------DRAKLVLDRVK--LLVFLSES 371 (722)
Q Consensus 307 ~---~~~k~DlVia~Sav~~~wi~~~i---~~~~-~g~~~ivw~I~e~r~~yf------~~~k~~l~rvk--~li~lS~~ 371 (722)
. ...++|+||+++...+.+..... .+.. ....+.++.++.....++ ......+.+.. .+++.|+.
T Consensus 125 ~~~~~~~~~Dvv~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~ 204 (413)
T 2x0d_A 125 NRTIPVAKHDIFIATAWWTAYAAQRIVSWQSDTYGIPPNKILYIIQDFEPGFYQWSSQYVLAESTYKYRGPQIAVFNSEL 204 (413)
T ss_dssp TCCEEECTTEEEEECSHHHHHHHHHHHHHHHHHHTCCCCCEEEEECSCGGGGSCSSHHHHHHHHTTSCCSCEEEEEESHH
T ss_pred cccccCCCCCEEEEehHHHHHHHHHhhhhhhhhcccccCcEEEEEeechhhcCccChHHHHHHHHhccCCceEEEEcCHH
Confidence 1 13479999887522111111110 0111 112234554433211110 01112222222 47778888
Q ss_pred hHHHHhhHHHhhhhhccCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCCCCCEEEEEEec
Q 004942 372 QTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSS 451 (722)
Q Consensus 372 ~~~~~~~~~~~~~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~~~~~lIl~vGr 451 (722)
..+. .. +.+... . .+.+||||+|.+.|.+. ..+ .+++..|+++||
T Consensus 205 ~~~~----l~----~~g~~~-------~----~~~~i~~g~d~~~~~~~---------------~~~-~~~~~~il~~gr 249 (413)
T 2x0d_A 205 LKQY----FN----NKGYNF-------T----DEYFFQPKINTTLKNYI---------------NDK-RQKEKIILVYGR 249 (413)
T ss_dssp HHHH----HH----HHTCCC-------S----EEEEECCCCCHHHHTTT---------------TSC-CCCCSEEEEEEC
T ss_pred HHHH----HH----HcCCCC-------C----ceEEeCCCcCchhhccc---------------ccc-cCCCCEEEEEec
Confidence 6443 21 112221 1 34789999986533221 011 234557889999
Q ss_pred C-CCCCCHHHHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCC
Q 004942 452 I-NPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNE 530 (722)
Q Consensus 452 i-~~~Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (722)
+ .+.||++.|++|++.+.++.|+.
T Consensus 250 ~~~~~Kg~~~li~A~~~l~~~~~~~------------------------------------------------------- 274 (413)
T 2x0d_A 250 PSVKRNAFTLIVEALKIFVQKYDRS------------------------------------------------------- 274 (413)
T ss_dssp TTCGGGCHHHHHHHHHHHHHHCTTG-------------------------------------------------------
T ss_pred CchhccCHHHHHHHHHHHHHhCCCC-------------------------------------------------------
Confidence 6 68999999999999998765530
Q ss_pred cccccCCCCCcccccCCCCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEe
Q 004942 531 PVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLW 610 (722)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f 610 (722)
...+|+++|+|+++. .+++.++|.|
T Consensus 275 ---------------------------~~~~l~ivG~~~~~~----------------------------~l~~~~~v~f 299 (413)
T 2x0d_A 275 ---------------------------NEWKIISVGEKHKDI----------------------------ALGKGIHLNS 299 (413)
T ss_dssp ---------------------------GGCEEEEEESCCCCE----------------------------EEETTEEEEE
T ss_pred ---------------------------CceEEEEEcCCchhh----------------------------hcCCcCcEEE
Confidence 014677888886541 1255678999
Q ss_pred CCch--hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhccCccEEEECCCCccHHHHHHHHH
Q 004942 611 TPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLR 688 (722)
Q Consensus 611 ~G~~--~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g~tGlLvp~~d~~~e~LA~aI~ 688 (722)
+|.+ ++++.+|+.||++|+||. .|+||++++||||||+|||+++ ||..|+|.++.+|++++++|+ ++||++|.
T Consensus 300 ~G~~~~~~l~~~~~~adv~v~pS~--~E~~g~~~lEAmA~G~PVV~~~-~g~~e~v~~~~~G~lv~~~d~--~~la~ai~ 374 (413)
T 2x0d_A 300 LGKLTLEDYADLLKRSSIGISLMI--SPHPSYPPLEMAHFGLRVITNK-YENKDLSNWHSNIVSLEQLNP--ENIAETLV 374 (413)
T ss_dssp EESCCHHHHHHHHHHCCEEECCCS--SSSCCSHHHHHHHTTCEEEEEC-BTTBCGGGTBTTEEEESSCSH--HHHHHHHH
T ss_pred cCCCCHHHHHHHHHhCCEEEEecC--CCCCCcHHHHHHhCCCcEEEeC-CCcchhhhcCCCEEEeCCCCH--HHHHHHHH
Confidence 9975 789999999999999997 8999999999999999999954 667899999999999999998 99999999
Q ss_pred HhhcCHHHHHHHHHHHHHHHHhhcHHHHHHH
Q 004942 689 YLLKNPSVRERMAMEGRKKSNGLAERHSLGR 719 (722)
Q Consensus 689 ~LL~np~~r~~mg~~grk~ve~~~~~~~~~~ 719 (722)
.+++|++++++ ++++.+++|+|+.+.++
T Consensus 375 ~ll~~~~~~~~---~~~~~~~~~~W~~~~~~ 402 (413)
T 2x0d_A 375 ELCMSFNNRDV---DKKESSNMMFYINEFNE 402 (413)
T ss_dssp HHHHHTC----------CCBSCGGGCCCC--
T ss_pred HHHcCHHHHHH---hHHHHHHhCCHHHHHHH
Confidence 99999998887 56777778998776544
No 16
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=99.95 E-value=1e-26 Score=240.77 Aligned_cols=311 Identities=13% Similarity=0.050 Sum_probs=217.1
Q ss_pred cEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCcc------------------
Q 004942 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP------------------ 304 (722)
Q Consensus 243 kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~------------------ 304 (722)
+||++++ .+.||....+.+||++|.+.||+|.+++... +.....+...|++++..+...
T Consensus 7 mkIl~~~--~~~gG~~~~~~~la~~L~~~G~~V~v~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (364)
T 1f0k_A 7 KRLMVMA--GGTGGHVFPGLAVAHHLMAQGWQVRWLGTAD-RMEADLVPKHGIEIDFIRISGLRGKGIKALIAAPLRIFN 83 (364)
T ss_dssp CEEEEEC--CSSHHHHHHHHHHHHHHHTTTCEEEEEECTT-STHHHHGGGGTCEEEECCCCCCTTCCHHHHHTCHHHHHH
T ss_pred cEEEEEe--CCCccchhHHHHHHHHHHHcCCEEEEEecCC-cchhhhccccCCceEEecCCccCcCccHHHHHHHHHHHH
Confidence 6899886 3457888889999999999999999998443 222233445689988765431
Q ss_pred ------chhhhcCccEEEECCchhhHhHHHHHHhccCCCccEEEEEecchhHhHHHHHhhhccccEEEEecHHhHHHHhh
Q 004942 305 ------SFKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFDRAKLVLDRVKLLVFLSESQTKQWLT 378 (722)
Q Consensus 305 ------~~~~~~k~DlVia~Sav~~~wi~~~i~~~~~g~~~ivw~I~e~r~~yf~~~k~~l~rvk~li~lS~~~~~~~~~ 378 (722)
++.++.+||+||+++... .+. ..+.....+.+ ++++.|.....+..+ ......+.++..++.
T Consensus 84 ~~~~l~~~l~~~~pDvv~~~~~~~-~~~-~~~~~~~~~~p-~v~~~~~~~~~~~~~--~~~~~~d~v~~~~~~------- 151 (364)
T 1f0k_A 84 AWRQARAIMKAYKPDVVLGMGGYV-SGP-GGLAAWSLGIP-VVLHEQNGIAGLTNK--WLAKIATKVMQAFPG------- 151 (364)
T ss_dssp HHHHHHHHHHHHCCSEEEECSSTT-HHH-HHHHHHHTTCC-EEEEECSSSCCHHHH--HHTTTCSEEEESSTT-------
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcC-chH-HHHHHHHcCCC-EEEEecCCCCcHHHH--HHHHhCCEEEecChh-------
Confidence 122366999999986432 222 22322333444 455554321111111 111223334332211
Q ss_pred HHHhhhhhccCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCCCCCE-EEEEEecCCCCCC
Q 004942 379 WCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDM-LVLSLSSINPGKG 457 (722)
Q Consensus 379 ~~~~~~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~~~~~-lIl~vGri~~~Kg 457 (722)
. . . .+.+||||++.+.+.+.. .++++++++++. ++++.|++.+.|+
T Consensus 152 ------~--------~----~----~~~~i~n~v~~~~~~~~~-----------~~~~~~~~~~~~~il~~~g~~~~~k~ 198 (364)
T 1f0k_A 152 ------A--------F----P----NAEVVGNPVRTDVLALPL-----------PQQRLAGREGPVRVLVVGGSQGARIL 198 (364)
T ss_dssp ------S--------S----S----SCEECCCCCCHHHHTSCC-----------HHHHHTTCCSSEEEEEECTTTCCHHH
T ss_pred ------h--------c----C----CceEeCCccchhhcccch-----------hhhhcccCCCCcEEEEEcCchHhHHH
Confidence 0 0 1 236899999866554322 135677766665 4556679999999
Q ss_pred HHHHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCcccccCC
Q 004942 458 QLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLL 537 (722)
Q Consensus 458 ~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (722)
++.+++|+..+.+ +
T Consensus 199 ~~~li~a~~~l~~---~--------------------------------------------------------------- 212 (364)
T 1f0k_A 199 NQTMPQVAAKLGD---S--------------------------------------------------------------- 212 (364)
T ss_dssp HHHHHHHHHHHGG---G---------------------------------------------------------------
T ss_pred HHHHHHHHHHhcC---C---------------------------------------------------------------
Confidence 9999999998843 1
Q ss_pred CCCcccccCCCCccccCCccccee-EEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEeCCchhh
Q 004942 538 SPSLFTSIGNTDAVSFGSGHLRRK-VLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTR 616 (722)
Q Consensus 538 ~~~~~~~~~~~~~~~~g~~~~~~~-lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~G~~~d 616 (722)
.+ ++++|+|+. +.++.++... ++ ++|.|+|.+++
T Consensus 213 ----------------------~~~l~i~G~~~~-~~l~~~~~~~---------------------~~-~~v~~~g~~~~ 247 (364)
T 1f0k_A 213 ----------------------VTIWHQSGKGSQ-QSVEQAYAEA---------------------GQ-PQHKVTEFIDD 247 (364)
T ss_dssp ----------------------EEEEEECCTTCH-HHHHHHHHHT---------------------TC-TTSEEESCCSC
T ss_pred ----------------------cEEEEEcCCchH-HHHHHHHhhc---------------------CC-CceEEecchhh
Confidence 23 567888873 5555554322 55 37999999999
Q ss_pred HHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChh--------hhhccCccEEEECCCCccHHHHHHHHH
Q 004942 617 VASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTK--------EIVEHNVTGLLHPPGHPGAQVLAQNLR 688 (722)
Q Consensus 617 v~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~--------EIVe~g~tGlLvp~~d~~~e~LA~aI~ 688 (722)
+..+|+.||++|+|| + |++++|||+||+|||+++.+|.+ ++++++. |++++++|.++++|+++|.
T Consensus 248 ~~~~~~~ad~~v~~s---g---~~~~~EAma~G~Pvi~~~~~g~~~~q~~~~~~~~~~g~-g~~~~~~d~~~~~la~~i~ 320 (364)
T 1f0k_A 248 MAAAYAWADVVVCRS---G---ALTVSEIAAAGLPALFVPFQHKDRQQYWNALPLEKAGA-AKIIEQPQLSVDAVANTLA 320 (364)
T ss_dssp HHHHHHHCSEEEECC---C---HHHHHHHHHHTCCEEECCCCCTTCHHHHHHHHHHHTTS-EEECCGGGCCHHHHHHHHH
T ss_pred HHHHHHhCCEEEECC---c---hHHHHHHHHhCCCEEEeeCCCCchhHHHHHHHHHhCCc-EEEeccccCCHHHHHHHHH
Confidence 999999999999999 3 99999999999999999999764 5777665 9999998833499999999
Q ss_pred HhhcCHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 004942 689 YLLKNPSVRERMAMEGRKKSNGLAERHSLGRYC 721 (722)
Q Consensus 689 ~LL~np~~r~~mg~~grk~ve~~~~~~~~~~Y~ 721 (722)
.+ |++.+++|++++++.+++|+|+.++++|.
T Consensus 321 ~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (364)
T 1f0k_A 321 GW--SRETLLTMAERARAASIPDATERVANEVS 351 (364)
T ss_dssp TC--CHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred hc--CHHHHHHHHHHHHHhhccCHHHHHHHHHH
Confidence 99 99999999999999998899999998875
No 17
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=99.95 E-value=1.2e-26 Score=221.71 Aligned_cols=186 Identities=20% Similarity=0.295 Sum_probs=156.3
Q ss_pred eecCCCCCCCCC--chhH--HHHhhhhHHHHHHHhCCCCCCEEEEEEecCC-CCCCHHHHHHHHHHhH--HhCCCCcchh
Q 004942 407 GFTCSLNTPTSS--PEKM--REKRNLLRDSVRKEMGLTDQDMLVLSLSSIN-PGKGQLLLVESAQLMI--EQEPSMDDSK 479 (722)
Q Consensus 407 vIpngid~~~f~--~~~~--~ekr~~~r~~~R~elgl~~~~~lIl~vGri~-~~Kg~~~LleA~~~L~--~~~~~~~~~~ 479 (722)
+||||+|+..|. +... .+ .+..+|+++|++++ .+|+++|++. +.||++.+++++..+. ++.++
T Consensus 1 gipngvd~~~f~~~~~~~~~~~----~~~~~r~~~~~~~~-~~i~~~G~~~~~~K~~~~li~a~~~l~~~~~~~~----- 70 (200)
T 2bfw_A 1 GSHNGIDCSFWNESYLTGSRDE----RKKSLLSKFGMDEG-VTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQE----- 70 (200)
T ss_dssp ----CCCTTTSSGGGSCSCHHH----HHHHHHHHTTCCSC-EEEEEESCBCSSSSCHHHHHHHHHHHTTSGGGGG-----
T ss_pred CCCCccChhhccccccccchhh----HHHHHHHHcCCCCC-CEEEEeeccccccCCHHHHHHHHHHHHhhccCCC-----
Confidence 589999999998 6541 01 13678999999755 4899999999 9999999999999985 44333
Q ss_pred hhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCcccccCCCCCcccccCCCCccccCCcccc
Q 004942 480 IRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLR 559 (722)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 559 (722)
T Consensus 71 -------------------------------------------------------------------------------- 70 (200)
T 2bfw_A 71 -------------------------------------------------------------------------------- 70 (200)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEEEcCCch--hHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEe-CCchh--hHHHHHHHcCEEEEcCCCC
Q 004942 560 RKVLSKSDGK--QQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLW-TPATT--RVASLYSAADVYVINSQGL 634 (722)
Q Consensus 560 ~~lli~G~G~--~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f-~G~~~--dv~~lysaADv~V~pS~~l 634 (722)
++|+++|.|+ ..+.++.++... + +|.| +|.++ ++..+|+.||++|+||.
T Consensus 71 ~~l~i~G~~~~~~~~~l~~~~~~~---------------------~---~v~~~~g~~~~~~~~~~~~~ad~~l~ps~-- 124 (200)
T 2bfw_A 71 MRFIIIGKGDPELEGWARSLEEKH---------------------G---NVKVITEMLSREFVRELYGSVDFVIIPSY-- 124 (200)
T ss_dssp EEEEEECCBCHHHHHHHHHHHHHC---------------------T---TEEEECSCCCHHHHHHHHTTCSEEEECCS--
T ss_pred eEEEEECCCChHHHHHHHHHHHhc---------------------C---CEEEEeccCCHHHHHHHHHHCCEEEECCC--
Confidence 5788889987 566666555322 3 8999 99885 89999999999999997
Q ss_pred CCCccHHHHHHHHhCCCEEEcCCCChhhhhccCccEEEECCCCccHHHHHHHHHHhhc-CHHHHHHHHHHHHHHHHhh
Q 004942 635 GETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLK-NPSVRERMAMEGRKKSNGL 711 (722)
Q Consensus 635 ~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g~tGlLvp~~d~~~e~LA~aI~~LL~-np~~r~~mg~~grk~ve~~ 711 (722)
.|+||++++||||||+|||+++.||..|++ ++.+|++++++|+ ++++++|..+++ |++.+++|++++++.+++|
T Consensus 125 ~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~~-~~~~g~~~~~~~~--~~l~~~i~~l~~~~~~~~~~~~~~a~~~~~~f 199 (200)
T 2bfw_A 125 FEPFGLVALEAMCLGAIPIASAVGGLRDII-TNETGILVKAGDP--GELANAILKALELSRSDLSKFRENCKKRAMSF 199 (200)
T ss_dssp CCSSCHHHHHHHHTTCEEEEESCHHHHHHC-CTTTCEEECTTCH--HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCccHHHHHHHHCCCCEEEeCCCChHHHc-CCCceEEecCCCH--HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 899999999999999999999999999999 8899999999998 999999999999 9999999999999998764
No 18
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.94 E-value=2.8e-27 Score=260.99 Aligned_cols=320 Identities=12% Similarity=0.077 Sum_probs=224.2
Q ss_pred cccEEEEEeCCCCCCcHHHHHHHHHHH--HHhCCCEEEEEEEcCC--CCChhHHHhCCcEEEEcCCcc-----chhhhcC
Q 004942 241 WSRKFILIFHELSMTGAPLSMMELATE--LLSCGATVSAVVLSKR--GGLMPELARRKIKVLEDRGEP-----SFKTSMK 311 (722)
Q Consensus 241 ~~kkillI~hels~gGaplsm~eLA~e--L~s~G~~VsvV~ls~~--g~l~~el~~~gI~Vl~~~~~~-----~~~~~~k 311 (722)
.+.||+++++.+..+|++..+++|++. +.+.|++|.+++.... +.+..++...+ .+....... ++.++.+
T Consensus 204 ~~~rI~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~i~~~~ 282 (568)
T 2vsy_A 204 GPLRVGFVSNGFGAHPTGLLTVALFEALQRRQPDLQMHLFATSGDDGSTLRTRLAQAS-TLHDVTALGHLATAKHIRHHG 282 (568)
T ss_dssp SCEEEEEEESCSSSSHHHHHHHHHHHHHHHHCTTEEEEEEESSCCCSCHHHHHHHHTS-EEEECTTCCHHHHHHHHHHTT
T ss_pred CCeEEEEECcccccChHHHHHHHHHhhccCCcccEEEEEEECCCCCccHHHHHHHhcC-eEEECCCCCHHHHHHHHHhCC
Confidence 346899999999999999999999999 7889999999985432 23445566666 665543321 4455889
Q ss_pred ccEEEECCchhhHhHHHHHHhccCCCccEEEEEecchhHhHHHHHhhhccccEEEEecHHhHHHHhhHHHhhhhhccCCC
Q 004942 312 ADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFDRAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQP 391 (722)
Q Consensus 312 ~DlVia~Sav~~~wi~~~i~~~~~g~~~ivw~I~e~r~~yf~~~k~~l~rvk~li~lS~~~~~~~~~~~~~~~i~l~~~~ 391 (722)
||+||.++.+........++.... +.++.|+...... .+......+. . ..+|.++....
T Consensus 283 ~Div~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-------~~~~~~~~~~--d------~~i~~s~~~~~---- 341 (568)
T 2vsy_A 283 IDLLFDLRGWGGGGRPEVFALRPA--PVQVNWLAYPGTS-------GAPWMDYVLG--D------AFALPPALEPF---- 341 (568)
T ss_dssp CSEEEECSSCTTCSSCHHHHTCCS--SEEEEESSSSSCC-------CCTTCCEEEE--C------TTTSCTTTGGG----
T ss_pred CCEEEECCCCCCcchHHHHhcCCC--ceeEeeecCCccc-------CCCCceEEEE--C------CCcCCcccccC----
Confidence 999997653322111122233222 2122222111000 0011111110 0 01111110000
Q ss_pred cccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHh
Q 004942 392 AVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQ 471 (722)
Q Consensus 392 ~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~~~~~lIl~vGri~~~Kg~~~LleA~~~L~~~ 471 (722)
. ...+.+|||.+..+...+... +...|+++|++++. +++++|++.+ ||++.+++++..+.++
T Consensus 342 ----~-----~~~i~~ipn~~~~~~~~~~~~-------~~~~r~~~~~~~~~-~v~~~g~~~~-K~~~~li~a~~~l~~~ 403 (568)
T 2vsy_A 342 ----Y-----SEHVLRLQGAFQPSDTSRVVA-------EPPSRTQCGLPEQG-VVLCCFNNSY-KLNPQSMARMLAVLRE 403 (568)
T ss_dssp ----C-----SSEEEECSSCSCCCCTTCCCC-------CCCCTGGGTCCTTS-CEEEECCCGG-GCCHHHHHHHHHHHHH
T ss_pred ----C-----cceeEcCCCcCCCCCCCCCCC-------CCCCccccCCCCCC-EEEEeCCccc-cCCHHHHHHHHHHHHh
Confidence 0 124688998554432211111 12346789997766 4569999999 9999999999999887
Q ss_pred CCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCcccccCCCCCcccccCCCCcc
Q 004942 472 EPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAV 551 (722)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (722)
.|+
T Consensus 404 ~~~----------------------------------------------------------------------------- 406 (568)
T 2vsy_A 404 VPD----------------------------------------------------------------------------- 406 (568)
T ss_dssp CTT-----------------------------------------------------------------------------
T ss_pred CCC-----------------------------------------------------------------------------
Confidence 666
Q ss_pred ccCCcccceeEEEcC-CchhHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCC-CcEEeCCch--hhHHHHHHHcCEE
Q 004942 552 SFGSGHLRRKVLSKS-DGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLS-KAMLWTPAT--TRVASLYSAADVY 627 (722)
Q Consensus 552 ~~g~~~~~~~lli~G-~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~-~~V~f~G~~--~dv~~lysaADv~ 627 (722)
.+|+++| +|+..+.++.++... ++. ++|.|+|.+ +++..+|+.||++
T Consensus 407 --------~~l~i~G~~g~~~~~l~~~~~~~---------------------~l~~~~v~~~g~~~~~~~~~~~~~adv~ 457 (568)
T 2vsy_A 407 --------SVLWLLSGPGEADARLRAFAHAQ---------------------GVDAQRLVFMPKLPHPQYLARYRHADLF 457 (568)
T ss_dssp --------CEEEEECCSTTHHHHHHHHHHHT---------------------TCCGGGEEEECCCCHHHHHHHGGGCSEE
T ss_pred --------cEEEEecCCHHHHHHHHHHHHHc---------------------CCChhHEEeeCCCCHHHHHHHHhcCCEE
Confidence 4688899 898888888777543 777 899999988 4899999999999
Q ss_pred EEcCCCCCCCccHHHHHHHHhCCCEEE-------cCCC-------ChhhhhccCccEEEECCCCccHHHHHHHHHHhhcC
Q 004942 628 VINSQGLGETFGRVTIEAMAFGVPVLG-------TDAG-------GTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKN 693 (722)
Q Consensus 628 V~pS~~l~EgfglviLEAMA~GlPVVa-------Td~G-------G~~EIVe~g~tGlLvp~~d~~~e~LA~aI~~LL~n 693 (722)
|+||. . +||++++||||||+|||+ |+.| |++|+|.+ |+ ++++++|..+++|
T Consensus 458 v~ps~--~-~~g~~~lEAma~G~Pvv~~~g~~~~s~~~~~~l~~~g~~e~v~~----------~~--~~la~~i~~l~~~ 522 (568)
T 2vsy_A 458 LDTHP--Y-NAHTTASDALWTGCPVLTTPGETFAARVAGSLNHHLGLDEMNVA----------DD--AAFVAKAVALASD 522 (568)
T ss_dssp ECCSS--S-CCSHHHHHHHHTTCCEEBCCCSSGGGSHHHHHHHHHTCGGGBCS----------SH--HHHHHHHHHHHHC
T ss_pred eeCCC--C-CCcHHHHHHHhCCCCEEeccCCCchHHHHHHHHHHCCChhhhcC----------CH--HHHHHHHHHHhcC
Confidence 99997 6 999999999999999999 9999 99999875 55 9999999999999
Q ss_pred HHHHHHHHHHHHHHH---HhhcHHHHHHHHH
Q 004942 694 PSVRERMAMEGRKKS---NGLAERHSLGRYC 721 (722)
Q Consensus 694 p~~r~~mg~~grk~v---e~~~~~~~~~~Y~ 721 (722)
++.+++|++++++.+ +.|+|+.++++|.
T Consensus 523 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 553 (568)
T 2vsy_A 523 PAALTALHARVDVLRRASGVFHMDGFADDFG 553 (568)
T ss_dssp HHHHHHHHHHHHHHHHHSSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCCCCHHHHHHHHH
Confidence 999999999999998 5699999988874
No 19
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=99.92 E-value=1.4e-24 Score=226.43 Aligned_cols=334 Identities=13% Similarity=0.096 Sum_probs=214.6
Q ss_pred cEEEEEeCCCCCCcHHHHHHHHHHHHHhCCC-EEEEEEEcCCCCChhH-HHhCCcEE-EEcCCc--------------c-
Q 004942 243 RKFILIFHELSMTGAPLSMMELATELLSCGA-TVSAVVLSKRGGLMPE-LARRKIKV-LEDRGE--------------P- 304 (722)
Q Consensus 243 kkillI~hels~gGaplsm~eLA~eL~s~G~-~VsvV~ls~~g~l~~e-l~~~gI~V-l~~~~~--------------~- 304 (722)
+||++++.+. ..-..+..|+++|.+.|+ +|.+++.....+...+ +...|+.+ +..... .
T Consensus 1 mkIl~v~~~~---~~~~~~~~l~~~L~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (384)
T 1vgv_A 1 MKVLTVFGTR---PEAIKMAPLVHALAKDPFFEAKVCVTAQHREMLDQVLKLFSIVPDYDLNIMQPGQGLTEITCRILEG 77 (384)
T ss_dssp CEEEEEECSH---HHHHHHHHHHHHHHHSTTCEEEEEECCSSGGGGHHHHHHHTCCCSEECCCCSTTSCHHHHHHHHHHH
T ss_pred CeEEEEeccc---HHHHHHHHHHHHHHhCCCCceEEEEcCCCHHHHHHHHHHcCCCCCcceecCCCCccHHHHHHHHHHH
Confidence 3677776542 112347789999999994 8887764433333332 33456644 333321 0
Q ss_pred --chhhhcCccEEEECCchhhHhHHHHHHhccCCCccEEEEEecch-----hHhHHH-HHhh-hccccEEEEecHHhHHH
Q 004942 305 --SFKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENR-----REYFDR-AKLV-LDRVKLLVFLSESQTKQ 375 (722)
Q Consensus 305 --~~~~~~k~DlVia~Sav~~~wi~~~i~~~~~g~~~ivw~I~e~r-----~~yf~~-~k~~-l~rvk~li~lS~~~~~~ 375 (722)
++.++.+||+||+++.....|.....+ ...+.+ ++++.+... ..+... .... ...++.+++.|+...+.
T Consensus 78 l~~~l~~~~pDvv~~~~~~~~~~~~~~~a-~~~~ip-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~ 155 (384)
T 1vgv_A 78 LKPILAEFKPDVVLVHGDTTTTLATSLAA-FYQRIP-VGHVEAGLRTGDLYSPWPEEANRTLTGHLAMYHFSPTETSRQN 155 (384)
T ss_dssp HHHHHHHHCCSEEEEETTCHHHHHHHHHH-HTTTCC-EEEESCCCCCSCTTSSTTHHHHHHHHHTTCSEEEESSHHHHHH
T ss_pred HHHHHHHhCCCEEEEeCCchHHHHHHHHH-HHHCCC-EEEEecccccccccCCCchHhhHHHHHhhccEEEcCcHHHHHH
Confidence 233478999999875422334333333 334444 555554321 001111 1122 23378889998876332
Q ss_pred HhhHHHhhhhhccCCCcccccCCCcccceEEeecCCC-CCCCCCchhHHHHhhhhHHHHHHHhC-CCC-CCEEEEEEecC
Q 004942 376 WLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSL-NTPTSSPEKMREKRNLLRDSVRKEMG-LTD-QDMLVLSLSSI 452 (722)
Q Consensus 376 ~~~~~~~~~i~l~~~~~vv~l~v~~~~~~v~vIpngi-d~~~f~~~~~~ekr~~~r~~~R~elg-l~~-~~~lIl~vGri 452 (722)
. ...+..+ ..+.++||++ |...+.+... ..+...+..+++++| ++. ++++++++||+
T Consensus 156 ----l----~~~g~~~-----------~~i~vi~n~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~vl~~~gr~ 215 (384)
T 1vgv_A 156 ----L----LRENVAD-----------SRIFITGNTVIDALLWVRDQV-MSSDKLRSELAANYPFIDPDKKMILVTGHRR 215 (384)
T ss_dssp ----H----HHTTCCG-----------GGEEECCCHHHHHHHHHHHHT-TTCHHHHHHHHTTCTTCCTTSEEEEEECCCB
T ss_pred ----H----HHcCCCh-----------hhEEEeCChHHHHHHhhhhcc-ccchhhhHHHHHhccccCCCCCEEEEEeCCc
Confidence 1 1122211 1257888874 3211111100 000001235788888 844 45678899999
Q ss_pred CCC-CCHHHHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCc
Q 004942 453 NPG-KGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEP 531 (722)
Q Consensus 453 ~~~-Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (722)
.+. ||++.+++|+..+.++.++
T Consensus 216 ~~~~kg~~~li~a~~~l~~~~~~--------------------------------------------------------- 238 (384)
T 1vgv_A 216 ESFGRGFEEICHALADIATTHQD--------------------------------------------------------- 238 (384)
T ss_dssp SSCCHHHHHHHHHHHHHHHHCTT---------------------------------------------------------
T ss_pred cccchHHHHHHHHHHHHHhhCCC---------------------------------------------------------
Confidence 876 9999999999999877654
Q ss_pred ccccCCCCCcccccCCCCccccCCcccceeEEE-cCCch-hHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEE
Q 004942 532 VRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLS-KSDGK-QQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAML 609 (722)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli-~G~G~-~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~ 609 (722)
.++++ .|.|+ .++.++.++ +..++|.
T Consensus 239 ----------------------------~~l~i~~g~~~~~~~~l~~~~------------------------~~~~~v~ 266 (384)
T 1vgv_A 239 ----------------------------IQIVYPVHLNPNVREPVNRIL------------------------GHVKNVI 266 (384)
T ss_dssp ----------------------------EEEEEECCBCHHHHHHHHHHH------------------------TTCTTEE
T ss_pred ----------------------------eEEEEEcCCCHHHHHHHHHHh------------------------hcCCCEE
Confidence 33444 35553 334444333 1125799
Q ss_pred eCCch--hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCC-CChhhhhccCccEEEECCCCccHHHHHHH
Q 004942 610 WTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA-GGTKEIVEHNVTGLLHPPGHPGAQVLAQN 686 (722)
Q Consensus 610 f~G~~--~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~-GG~~EIVe~g~tGlLvp~~d~~~e~LA~a 686 (722)
|+|.. +++..+|+.||++|+|| |.+++||||||+|||+++. ||.+|++++| +|+++++ |+ ++|+++
T Consensus 267 ~~g~~~~~~~~~~~~~ad~~v~~S-------g~~~lEA~a~G~PvI~~~~~~~~~e~v~~g-~g~lv~~-d~--~~la~~ 335 (384)
T 1vgv_A 267 LIDPQEYLPFVWLMNHAWLILTDS-------GGIQEEAPSLGKPVLVMRDTTERPEAVTAG-TVRLVGT-DK--QRIVEE 335 (384)
T ss_dssp EECCCCHHHHHHHHHHCSEEEESS-------STGGGTGGGGTCCEEEESSCCSCHHHHHHT-SEEEECS-SH--HHHHHH
T ss_pred EeCCCCHHHHHHHHHhCcEEEECC-------cchHHHHHHcCCCEEEccCCCCcchhhhCC-ceEEeCC-CH--HHHHHH
Confidence 96533 68999999999999998 2348999999999999986 9999999988 9999987 66 999999
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 004942 687 LRYLLKNPSVRERMAMEGRKKSNGLAERHSLGRYC 721 (722)
Q Consensus 687 I~~LL~np~~r~~mg~~grk~ve~~~~~~~~~~Y~ 721 (722)
|..+++||+.+++|++++++..++++++.+++.+.
T Consensus 336 i~~ll~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 370 (384)
T 1vgv_A 336 VTRLLKDENEYQAMSRAHNPYGDGQACSRILEALK 370 (384)
T ss_dssp HHHHHHCHHHHHHHHSSCCTTCCSCHHHHHHHHHH
T ss_pred HHHHHhChHHHhhhhhccCCCcCCCHHHHHHHHHH
Confidence 99999999999999999988777789998888764
No 20
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=99.92 E-value=7.1e-25 Score=227.36 Aligned_cols=329 Identities=13% Similarity=0.122 Sum_probs=207.0
Q ss_pred cEEEEEeCCCCCCcHHHHHHHHHHHHHhC-C-CEEEEEEEcCCCCChhH-HHhCCcEE-EEcCC--c-c-----------
Q 004942 243 RKFILIFHELSMTGAPLSMMELATELLSC-G-ATVSAVVLSKRGGLMPE-LARRKIKV-LEDRG--E-P----------- 304 (722)
Q Consensus 243 kkillI~hels~gGaplsm~eLA~eL~s~-G-~~VsvV~ls~~g~l~~e-l~~~gI~V-l~~~~--~-~----------- 304 (722)
+||++++.+.... ..+..++++|.+. | ++|.+++.........+ +...++++ +.... . .
T Consensus 9 mkIl~v~~~~~~~---~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (375)
T 3beo_A 9 LKVMTIFGTRPEA---IKMAPLVLELQKHPEKIESIVTVTAQHRQMLDQVLSIFGITPDFDLNIMKDRQTLIDITTRGLE 85 (375)
T ss_dssp EEEEEEECSHHHH---HHHHHHHHHHTTCTTTEEEEEEECCSSSHHHHHHHHHHTCCCSEECCCCCTTCCHHHHHHHHHH
T ss_pred ceEEEEecCcHHH---HHHHHHHHHHHhCCCCCCeEEEEcCCCHHHHHHHHHHcCCCCccccccCCCcccHHHHHHHHHH
Confidence 5899998643222 2456788889886 4 78877763322222222 22345544 22221 1 0
Q ss_pred ---chhhhcCccEEEECCchhhHhHHHHHHhccCCCccEEEEEecch--hH---hHH-HHHhhhc-cccEEEEecHHhHH
Q 004942 305 ---SFKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENR--RE---YFD-RAKLVLD-RVKLLVFLSESQTK 374 (722)
Q Consensus 305 ---~~~~~~k~DlVia~Sav~~~wi~~~i~~~~~g~~~ivw~I~e~r--~~---yf~-~~k~~l~-rvk~li~lS~~~~~ 374 (722)
++.++.+||+||+++.....+... +.....+.+ ++++.+..+ .. +.. .....+. .++.+++.|+...+
T Consensus 86 ~l~~~l~~~~pDvv~~~~~~~~~~~~~-~~~~~~~ip-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~ 163 (375)
T 3beo_A 86 GLDKVMKEAKPDIVLVHGDTTTTFIAS-LAAFYNQIP-VGHVEAGLRTWDKYSPYPEEMNRQLTGVMADLHFSPTAKSAT 163 (375)
T ss_dssp HHHHHHHHHCCSEEEEETTSHHHHHHH-HHHHHTTCC-EEEESCCCCCSCTTSSTTHHHHHHHHHHHCSEEEESSHHHHH
T ss_pred HHHHHHHHhCCCEEEEeCCchHHHHHH-HHHHHHCCC-EEEEecccccccccCCChhHhhhhHHhhhhheeeCCCHHHHH
Confidence 223377999999975432222222 222233444 555443211 00 101 1111222 37788898888643
Q ss_pred HHhhHHHhhhhhccCCCcccccCCCcccceEEeecCC-CCCCCCCchhHHHHhhhhHHHHHHHhCCCCCCEEEEEEecCC
Q 004942 375 QWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCS-LNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSIN 453 (722)
Q Consensus 375 ~~~~~~~~~~i~l~~~~~vv~l~v~~~~~~v~vIpng-id~~~f~~~~~~ekr~~~r~~~R~elgl~~~~~lIl~vGri~ 453 (722)
. . .+.+..+ ..+.+|||| +|...+.+... .+..+++++ ++++++++++||+.
T Consensus 164 ~----~----~~~g~~~-----------~~i~vi~n~~~d~~~~~~~~~------~~~~~~~~~--~~~~~vl~~~gr~~ 216 (375)
T 3beo_A 164 N----L----QKENKDE-----------SRIFITGNTAIDALKTTVKET------YSHPVLEKL--GNNRLVLMTAHRRE 216 (375)
T ss_dssp H----H----HHTTCCG-----------GGEEECCCHHHHHHHHHCCSS------CCCHHHHTT--TTSEEEEEECCCGG
T ss_pred H----H----HHcCCCc-----------ccEEEECChhHhhhhhhhhhh------hhHHHHHhc--cCCCeEEEEecccc
Confidence 2 1 1122221 135789998 66543322110 012234444 45567788999998
Q ss_pred CC-CCHHHHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCcc
Q 004942 454 PG-KGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPV 532 (722)
Q Consensus 454 ~~-Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (722)
+. ||++.+++|++.+.++.++
T Consensus 217 ~~~K~~~~li~a~~~l~~~~~~---------------------------------------------------------- 238 (375)
T 3beo_A 217 NLGEPMRNMFRAIKRLVDKHED---------------------------------------------------------- 238 (375)
T ss_dssp GTTHHHHHHHHHHHHHHHHCTT----------------------------------------------------------
T ss_pred cchhHHHHHHHHHHHHHhhCCC----------------------------------------------------------
Confidence 75 9999999999999876655
Q ss_pred cccCCCCCcccccCCCCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEeCC
Q 004942 533 RKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTP 612 (722)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~G 612 (722)
.++ ++|.|+.. .++..+. +.+ +..++|.|+|
T Consensus 239 ---------------------------~~~-i~~~g~~~-~~~~~~~----------------~~~----~~~~~v~~~g 269 (375)
T 3beo_A 239 ---------------------------VQV-VYPVHMNP-VVRETAN----------------DIL----GDYGRIHLIE 269 (375)
T ss_dssp ---------------------------EEE-EEECCSCH-HHHHHHH----------------HHH----TTCTTEEEEC
T ss_pred ---------------------------eEE-EEeCCCCH-HHHHHHH----------------HHh----hccCCEEEeC
Confidence 233 33555432 2222221 111 2235899966
Q ss_pred ch--hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCC-CChhhhhccCccEEEECCCCccHHHHHHHHHH
Q 004942 613 AT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA-GGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRY 689 (722)
Q Consensus 613 ~~--~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~-GG~~EIVe~g~tGlLvp~~d~~~e~LA~aI~~ 689 (722)
.. .++..+|++||++|+|| |.+++||||||+|||+++. ||.+|+++++ +|+++++ |+ ++|+++|..
T Consensus 270 ~~~~~~~~~~~~~ad~~v~~s-------g~~~lEA~a~G~Pvi~~~~~~~~~e~v~~g-~g~~v~~-d~--~~la~~i~~ 338 (375)
T 3beo_A 270 PLDVIDFHNVAARSYLMLTDS-------GGVQEEAPSLGVPVLVLRDTTERPEGIEAG-TLKLAGT-DE--ETIFSLADE 338 (375)
T ss_dssp CCCHHHHHHHHHTCSEEEECC-------HHHHHHHHHHTCCEEECSSCCSCHHHHHTT-SEEECCS-CH--HHHHHHHHH
T ss_pred CCCHHHHHHHHHhCcEEEECC-------CChHHHHHhcCCCEEEecCCCCCceeecCC-ceEEcCC-CH--HHHHHHHHH
Confidence 43 48999999999999988 6779999999999999964 9999999988 9999985 66 999999999
Q ss_pred hhcCHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 004942 690 LLKNPSVRERMAMEGRKKSNGLAERHSLGRYC 721 (722)
Q Consensus 690 LL~np~~r~~mg~~grk~ve~~~~~~~~~~Y~ 721 (722)
+++|++.+++|++++++.+++++++.+++.+.
T Consensus 339 ll~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 370 (375)
T 3beo_A 339 LLSDKEAHDKMSKASNPYGDGRASERIVEAIL 370 (375)
T ss_dssp HHHCHHHHHHHCCCCCTTCCSCHHHHHHHHHH
T ss_pred HHhChHhHhhhhhcCCCCCCCcHHHHHHHHHH
Confidence 99999999999999988877799999888764
No 21
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=99.92 E-value=3.5e-24 Score=199.13 Aligned_cols=130 Identities=20% Similarity=0.321 Sum_probs=110.1
Q ss_pred eeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEeCCch--hhHHHHHHHcCEEEEcCCCCCCC
Q 004942 560 RKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPAT--TRVASLYSAADVYVINSQGLGET 637 (722)
Q Consensus 560 ~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~G~~--~dv~~lysaADv~V~pS~~l~Eg 637 (722)
++|+++|+|+..+.++.++... ++ +|.| |.+ +++..+|+.||++|+||. .|+
T Consensus 33 ~~l~i~G~g~~~~~~~~~~~~~---------------------~~--~v~~-g~~~~~~~~~~~~~adv~v~ps~--~e~ 86 (166)
T 3qhp_A 33 IVLLLKGKGPDEKKIKLLAQKL---------------------GV--KAEF-GFVNSNELLEILKTCTLYVHAAN--VES 86 (166)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH---------------------TC--EEEC-CCCCHHHHHHHHTTCSEEEECCC--SCC
T ss_pred eEEEEEeCCccHHHHHHHHHHc---------------------CC--eEEE-eecCHHHHHHHHHhCCEEEECCc--ccC
Confidence 5788999999888888777533 44 7888 875 789999999999999997 899
Q ss_pred ccHHHHHHHHhCC-CEEE-cCCCChhhhhccCccEEEECCCCccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhcHHH
Q 004942 638 FGRVTIEAMAFGV-PVLG-TDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKSNGLAERH 715 (722)
Q Consensus 638 fglviLEAMA~Gl-PVVa-Td~GG~~EIVe~g~tGlLvp~~d~~~e~LA~aI~~LL~np~~r~~mg~~grk~ve~~~~~~ 715 (722)
||++++||||||+ |||+ ++.|+..|++.++.+ +++++|+ ++++++|.++++|++.+++|++++++.+++|+|+.
T Consensus 87 ~~~~~~Eama~G~vPvi~~~~~~~~~~~~~~~~~--~~~~~~~--~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~s~~~ 162 (166)
T 3qhp_A 87 EAIACLEAISVGIVPVIANSPLSATRQFALDERS--LFEPNNA--KDLSAKIDWWLENKLERERMQNEYAKSALNYTLEN 162 (166)
T ss_dssp CCHHHHHHHHTTCCEEEECCTTCGGGGGCSSGGG--EECTTCH--HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHC---
T ss_pred ccHHHHHHHhcCCCcEEeeCCCCchhhhccCCce--EEcCCCH--HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHCChhh
Confidence 9999999999998 9999 568999999998654 7888888 99999999999999999999999999998899998
Q ss_pred HHHH
Q 004942 716 SLGR 719 (722)
Q Consensus 716 ~~~~ 719 (722)
++++
T Consensus 163 ~~~~ 166 (166)
T 3qhp_A 163 SVIQ 166 (166)
T ss_dssp ----
T ss_pred hhcC
Confidence 7753
No 22
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=99.91 E-value=1.3e-22 Score=225.66 Aligned_cols=301 Identities=10% Similarity=0.061 Sum_probs=195.1
Q ss_pred CccEEEECCchhhHhHHHHHHhccCCCccEEEEEecchh--HhHHH---HHhhh---ccccEEEEecHHhHHHHhhHHHh
Q 004942 311 KADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRR--EYFDR---AKLVL---DRVKLLVFLSESQTKQWLTWCEE 382 (722)
Q Consensus 311 k~DlVia~Sav~~~wi~~~i~~~~~g~~~ivw~I~e~r~--~yf~~---~k~~l---~rvk~li~lS~~~~~~~~~~~~~ 382 (722)
.+|+|++|.-+. ..+...+.....+ .++++.+|.+.. ..|.. ....+ -..+.+.|.+....+.+...|..
T Consensus 123 ~~DiV~vHdyhl-~~l~~~lr~~~~~-~~i~~~~H~pfp~~~~~~~lp~~~~il~~ll~~d~i~f~~~~~~~~f~~~~~~ 200 (482)
T 1uqt_A 123 DDDIIWIHDYHL-LPFAHELRKRGVN-NRIGFFLHIPFPTPEIFNALPTYDTLLEQLCDYDLLGFQTENDRLAFLDCLSN 200 (482)
T ss_dssp TTCEEEEESGGG-TTHHHHHHHTTCC-SCEEEECCSCCCCHHHHTTSTTHHHHHHHHTTSSEEEESSHHHHHHHHHHHHH
T ss_pred CCCEEEEECchH-HHHHHHHHHhCCC-CcEEEEEcCCCCCHHHHhhCccHHHHHHhhhccCeEEEECHHHHHHHHHHHHH
Confidence 469998886432 2233444333222 347777775421 11111 01111 22456777776644433333421
Q ss_pred hhhhccC-CCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHH
Q 004942 383 EKLKLRS-QPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLL 461 (722)
Q Consensus 383 ~~i~l~~-~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl~~~~~lIl~vGri~~~Kg~~~L 461 (722)
. +.... ....+.. ......+.+||+|+|++.|.+.......+- +..+|++++ ++.+|+++||+.+.||++.+
T Consensus 201 ~-l~~~~~~~~~~~~--~g~~~~v~vip~GID~~~f~~~~~~~~~~~-~~~lr~~~~---~~~vil~VgRl~~~Kgi~~l 273 (482)
T 1uqt_A 201 L-TRVTTRSAKSHTA--WGKAFRTEVYPIGIEPKEIAKQAAGPLPPK-LAQLKAELK---NVQNIFSVERLDYSKGLPER 273 (482)
T ss_dssp H-SCEEEETTTEEEE--TTEEEEEEECCCCCCHHHHHHHHHSCCCHH-HHHHHHHTT---TCEEEEEECCBCGGGCHHHH
T ss_pred H-hCCccccCCeEEE--CCeEEEEEEEeccCCHHHHHHHhcCcchHH-HHHHHHHhC---CCEEEEEEeCCcccCCHHHH
Confidence 1 11000 0000100 111235789999999888754321000000 356788886 56799999999999999999
Q ss_pred HHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCcccccCCCCCc
Q 004942 462 VESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSL 541 (722)
Q Consensus 462 leA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (722)
|+|++.+.++.|+.
T Consensus 274 l~A~~~ll~~~p~~------------------------------------------------------------------ 287 (482)
T 1uqt_A 274 FLAYEALLEKYPQH------------------------------------------------------------------ 287 (482)
T ss_dssp HHHHHHHHHHCGGG------------------------------------------------------------------
T ss_pred HHHHHHHHHhCccc------------------------------------------------------------------
Confidence 99999998877651
Q ss_pred ccccCCCCccccCCcccceeEEEcCC-----chhHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCC--CcEE-eCCc
Q 004942 542 FTSIGNTDAVSFGSGHLRRKVLSKSD-----GKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLS--KAML-WTPA 613 (722)
Q Consensus 542 ~~~~~~~~~~~~g~~~~~~~lli~G~-----G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~--~~V~-f~G~ 613 (722)
..++.|+++|. |++.+.++..+. ++...+...++.. ..|. |.|.
T Consensus 288 ---------------~~~v~Lv~vG~p~~~~~~~~~~l~~~l~-------------~l~~~in~~~g~~~~~~v~~~~g~ 339 (482)
T 1uqt_A 288 ---------------HGKIRYTQIAPTSRGDVQAYQDIRHQLE-------------NEAGRINGKYGQLGWTPLYYLNQH 339 (482)
T ss_dssp ---------------TTTEEEEEECCBCSTTSHHHHHHHHHHH-------------HHHHHHHHHHCBTTBCSEEEECSC
T ss_pred ---------------cCcEEEEEEECCCccchHHHHHHHHHHH-------------HHHHHHhhhcccCCCceEEEeCCC
Confidence 01245666663 554444443331 1111111111222 1355 5664
Q ss_pred --hhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCC-----CEEEcCCCChhhhhccCccEEEECCCCccHHHHHHH
Q 004942 614 --TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGV-----PVLGTDAGGTKEIVEHNVTGLLHPPGHPGAQVLAQN 686 (722)
Q Consensus 614 --~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~Gl-----PVVaTd~GG~~EIVe~g~tGlLvp~~d~~~e~LA~a 686 (722)
.+++..+|++||++|+||. .||||++++||||||+ |||+|+.+|..+.+. +|+++++.|+ +++|++
T Consensus 340 v~~~el~~ly~~ADv~v~pS~--~EGfgLv~lEAmA~g~~~~~gpvV~S~~~G~~~~l~---~g~lv~p~d~--~~lA~a 412 (482)
T 1uqt_A 340 FDRKLLMKIFRYSDVGLVTPL--RDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANELT---SALIVNPYDR--DEVAAA 412 (482)
T ss_dssp CCHHHHHHHHHHCSEEEECCS--SBSCCHHHHHHHHHSCTTSCCEEEEETTBGGGGTCT---TSEEECTTCH--HHHHHH
T ss_pred CCHHHHHHHHHHccEEEECCC--cccCCchHHHHHHhCCCCCCCCEEEECCCCCHHHhC---CeEEECCCCH--HHHHHH
Confidence 4789999999999999996 9999999999999997 899999888888773 7999999998 999999
Q ss_pred HHHhhcC-HHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 004942 687 LRYLLKN-PSVRERMAMEGRKKSNGLAERHSLGRYC 721 (722)
Q Consensus 687 I~~LL~n-p~~r~~mg~~grk~ve~~~~~~~~~~Y~ 721 (722)
|..+|++ +++++++++++++.+.+|+++.++++|.
T Consensus 413 i~~lL~~~~~~r~~~~~~~~~~v~~~s~~~~a~~~l 448 (482)
T 1uqt_A 413 LDRALTMSLAERISRHAEMLDVIVKNDINHWQECFI 448 (482)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999984 6789999999999999999999998875
No 23
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=99.89 E-value=5.6e-23 Score=219.55 Aligned_cols=299 Identities=11% Similarity=0.101 Sum_probs=202.7
Q ss_pred EeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCC-ChhHHHhCCcE--EEEcCCcc-----chhhhcCccEEEECC
Q 004942 248 IFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG-LMPELARRKIK--VLEDRGEP-----SFKTSMKADLVIAGS 319 (722)
Q Consensus 248 I~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~-l~~el~~~gI~--Vl~~~~~~-----~~~~~~k~DlVia~S 319 (722)
.+|..+. |...++..|+++|.+.| +|.+.+....+. ....+. .++. +. .+.+. ++.++.+||+||...
T Consensus 44 wih~~s~-G~~~~~~~L~~~L~~~~-~v~v~~~~~~~~~~~~~~~-~~v~~~~~-~p~~~~~~l~~~l~~~~pDiv~~~~ 119 (374)
T 2xci_A 44 WVHTASI-GEFNTFLPILKELKREH-RILLTYFSPRAREYLKTKS-DFYDCLHP-LPLDNPFSVKRFEELSKPKALIVVE 119 (374)
T ss_dssp EEECSSH-HHHHHHHHHHHHHHHHS-CEEEEESCGGGHHHHHTTG-GGCSEEEE-CCCSSHHHHHHHHHHHCCSEEEEES
T ss_pred EEEcCCH-HHHHHHHHHHHHHHhcC-CEEEEEcCCcHHHHHHHhc-ccccceeE-CCCCCHHHHHHHHHHhCCCEEEEEC
Confidence 4566554 66788999999999999 887666432221 111111 3566 55 55433 555688999998642
Q ss_pred chhhHhHHHHHHhccCCCccEEEEEecchhHhHHHHHhhhccccEEEEecHHhHHHHhhHHHhhhhhccCCCcccccCCC
Q 004942 320 AVCATWIDQYITRFPAGGSQVVWWIMENRREYFDRAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVN 399 (722)
Q Consensus 320 av~~~wi~~~i~~~~~g~~~ivw~I~e~r~~yf~~~k~~l~rvk~li~lS~~~~~~~~~~~~~~~i~l~~~~~vv~l~v~ 399 (722)
. ..|.. ++..... + ++.+........ ..+..+.+++.+++.|+...+. . ..++. .
T Consensus 120 ~--~~~~~-~~~~~~~--p-~~~~~~~~~~~~--~~~~~~~~~d~ii~~S~~~~~~----l----~~~g~---------~ 174 (374)
T 2xci_A 120 R--EFWPS-LIIFTKV--P-KILVNAYAKGSL--IEKILSKKFDLIIMRTQEDVEK----F----KTFGA---------K 174 (374)
T ss_dssp C--CCCHH-HHHHCCS--C-EEEEEECCCCCH--HHHHHHTTCSEEEESCHHHHHH----H----HTTTC---------C
T ss_pred c--cCcHH-HHHHHhC--C-EEEEEeecCchH--HHHHHHHhCCEEEECCHHHHHH----H----HHcCC---------C
Confidence 1 22332 2222222 3 333221111111 2234456788999999987442 1 11111 1
Q ss_pred cccceEEeecCCC-CCCCCCchhHHHHhhhhHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCcch
Q 004942 400 DELAFVAGFTCSL-NTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDS 478 (722)
Q Consensus 400 ~~~~~v~vIpngi-d~~~f~~~~~~ekr~~~r~~~R~elgl~~~~~lIl~vGri~~~Kg~~~LleA~~~L~~~~~~~~~~ 478 (722)
.+.+|||+. +.... + . ++ + ..+++++.|+ ..||++.|++|++.+.++.|+
T Consensus 175 ----ki~vi~n~~f~~~~~-~-~-------------~~--l--~~~vi~~~~~--~~k~~~~ll~A~~~l~~~~p~---- 225 (374)
T 2xci_A 175 ----RVFSCGNLKFICQKG-K-G-------------IK--L--KGEFIVAGSI--HTGEVEIILKAFKEIKKTYSS---- 225 (374)
T ss_dssp ----SEEECCCGGGCCCCC-S-C-------------CC--C--SSCEEEEEEE--CGGGHHHHHHHHHHHHTTCTT----
T ss_pred ----eEEEcCCCccCCCcC-h-h-------------hh--h--cCCEEEEEeC--CCchHHHHHHHHHHHHhhCCC----
Confidence 246788762 11110 1 0 00 1 1245666665 468999999999999776555
Q ss_pred hhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCcccccCCCCCcccccCCCCccccCCccc
Q 004942 479 KIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHL 558 (722)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 558 (722)
T Consensus 226 -------------------------------------------------------------------------------- 225 (374)
T 2xci_A 226 -------------------------------------------------------------------------------- 225 (374)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeEEEcCCchhH-HHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCC--------CcEEeCCchhhHHHHHHHcCEEEE
Q 004942 559 RRKVLSKSDGKQQ-QALKILIGSVGSKSNKVPYVKEILEFLSQHSNLS--------KAMLWTPATTRVASLYSAADVYVI 629 (722)
Q Consensus 559 ~~~lli~G~G~~~-~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~--------~~V~f~G~~~dv~~lysaADv~V~ 629 (722)
.+|+++|+|+++ +.++.++... ++. .+|.+.|.++++..+|+.||++++
T Consensus 226 -~~lvivG~g~~~~~~l~~~~~~~---------------------gl~~~~~~~~~~~v~~~~~~~dl~~~y~~aDv~vl 283 (374)
T 2xci_A 226 -LKLILVPRHIENAKIFEKKARDF---------------------GFKTSFFENLEGDVILVDRFGILKELYPVGKIAIV 283 (374)
T ss_dssp -CEEEEEESSGGGHHHHHHHHHHT---------------------TCCEEETTCCCSSEEECCSSSCHHHHGGGEEEEEE
T ss_pred -cEEEEECCCHHHHHHHHHHHHHC---------------------CCceEEecCCCCcEEEECCHHHHHHHHHhCCEEEE
Confidence 468899999987 5788777544 333 478999988999999999999888
Q ss_pred cCCCCCCCccHHHHHHHHhCCCEEEc-CCCChhhhhccC-ccEEEECCCCccHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 004942 630 NSQGLGETFGRVTIEAMAFGVPVLGT-DAGGTKEIVEHN-VTGLLHPPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKK 707 (722)
Q Consensus 630 pS~~l~EgfglviLEAMA~GlPVVaT-d~GG~~EIVe~g-~tGlLvp~~d~~~e~LA~aI~~LL~np~~r~~mg~~grk~ 707 (722)
+|. ..|++|++++||||||+|||++ +.+|++|++++. .+|++++++|+ ++|+++|.++++| +.+++|+++|++.
T Consensus 284 ~ss-~~e~gg~~~lEAmA~G~PVI~~~~~~~~~e~~~~~~~~G~l~~~~d~--~~La~ai~~ll~d-~~r~~mg~~ar~~ 359 (374)
T 2xci_A 284 GGT-FVNIGGHNLLEPTCWGIPVIYGPYTHKVNDLKEFLEKEGAGFEVKNE--TELVTKLTELLSV-KKEIKVEEKSREI 359 (374)
T ss_dssp CSS-SSSSCCCCCHHHHTTTCCEEECSCCTTSHHHHHHHHHTTCEEECCSH--HHHHHHHHHHHHS-CCCCCHHHHHHHH
T ss_pred CCc-ccCCCCcCHHHHHHhCCCEEECCCccChHHHHHHHHHCCCEEEeCCH--HHHHHHHHHHHhH-HHHHHHHHHHHHH
Confidence 875 3578899999999999999975 789999998763 47889999888 9999999999999 9999999999999
Q ss_pred HHh
Q 004942 708 SNG 710 (722)
Q Consensus 708 ve~ 710 (722)
+++
T Consensus 360 ~~~ 362 (374)
T 2xci_A 360 KGC 362 (374)
T ss_dssp HHH
T ss_pred HHh
Confidence 976
No 24
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=99.89 E-value=1.4e-22 Score=218.28 Aligned_cols=101 Identities=13% Similarity=0.158 Sum_probs=90.8
Q ss_pred CCCCcEEeCCch--hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHH-------HhCCCEEEcCCCChhhhhccCccEEE-
Q 004942 603 NLSKAMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAM-------AFGVPVLGTDAGGTKEIVEHNVTGLL- 672 (722)
Q Consensus 603 ~L~~~V~f~G~~--~dv~~lysaADv~V~pS~~l~EgfglviLEAM-------A~GlPVVaTd~GG~~EIVe~g~tGlL- 672 (722)
++.++|.|+|.+ +++..+|++||++|+||. .|+||++++||| |||+|||+|+. +.++.+|++
T Consensus 262 ~l~~~V~f~G~~~~~~l~~~~~~adv~v~ps~--~E~~~~~~lEAm~Kl~eYla~G~PVIas~~------v~~~~~G~l~ 333 (406)
T 2hy7_A 262 GYGDNVIVYGEMKHAQTIGYIKHARFGIAPYA--SEQVPVYLADSSMKLLQYDFFGLPAVCPNA------VVGPYKSRFG 333 (406)
T ss_dssp TCCTTEEEECCCCHHHHHHHHHTCSEEECCBS--CSCCCTTHHHHCHHHHHHHHHTCCEEEEGG------GTCSCSSEEE
T ss_pred CCCCCEEEcCCCCHHHHHHHHHhcCEEEECCC--cccCchHHHHHHHHHHHHhhCCCcEEEehh------cccCcceEEE
Confidence 778899999987 689999999999999997 899999999999 99999999987 667889999
Q ss_pred ECCCCccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhcHHHHHHHHHC
Q 004942 673 HPPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKSNGLAERHSLGRYCN 722 (722)
Q Consensus 673 vp~~d~~~e~LA~aI~~LL~np~~r~~mg~~grk~ve~~~~~~~~~~Y~~ 722 (722)
++++|+ ++|+++|..+++|++ ++.+++|+|+..+++|.+
T Consensus 334 v~~~d~--~~la~ai~~ll~~~~---------~~~~~~~sw~~~a~~~~~ 372 (406)
T 2hy7_A 334 YTPGNA--DSVIAAITQALEAPR---------VRYRQCLNWSDTTDRVLD 372 (406)
T ss_dssp ECTTCH--HHHHHHHHHHHHCCC---------CCCSCCCBHHHHHHHHHC
T ss_pred eCCCCH--HHHHHHHHHHHhCcc---------hhhhhcCCHHHHHHHHHH
Confidence 999998 999999999999987 133467999999998864
No 25
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=99.87 E-value=2.7e-22 Score=190.90 Aligned_cols=152 Identities=22% Similarity=0.257 Sum_probs=128.6
Q ss_pred CCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCcccc
Q 004942 438 GLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNE 517 (722)
Q Consensus 438 gl~~~~~lIl~vGri~~~Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~ 517 (722)
.+++++++|+|+|++.+.||++.+++++..+ ++
T Consensus 18 ~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l----~~------------------------------------------- 50 (177)
T 2f9f_A 18 KFKCYGDFWLSVNRIYPEKRIELQLEVFKKL----QD------------------------------------------- 50 (177)
T ss_dssp CCCCCCSCEEEECCSSGGGTHHHHHHHHHHC----TT-------------------------------------------
T ss_pred ccCCCCCEEEEEeccccccCHHHHHHHHHhC----CC-------------------------------------------
Confidence 3556777899999999999999999999987 33
Q ss_pred ccccchhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEEcCCchhHHHHHHhhhccCCCCCCchhHHHHHHH
Q 004942 518 LSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEF 597 (722)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~ 597 (722)
++|+++|.|+..+.++.++...
T Consensus 51 ------------------------------------------~~l~i~G~~~~~~~l~~~~~~~---------------- 72 (177)
T 2f9f_A 51 ------------------------------------------EKLYIVGWFSKGDHAERYARKI---------------- 72 (177)
T ss_dssp ------------------------------------------SCEEEEBCCCTTSTHHHHHHHH----------------
T ss_pred ------------------------------------------cEEEEEecCccHHHHHHHHHhh----------------
Confidence 3577888887776666555310
Q ss_pred HHhcCCCCCcEEeCCchh--hHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhccCccEEEECC
Q 004942 598 LSQHSNLSKAMLWTPATT--RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPP 675 (722)
Q Consensus 598 l~~~~~L~~~V~f~G~~~--dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g~tGlLvp~ 675 (722)
.+++.++|.|+|.++ ++..+|+.||++|+||. .|+||++++||||||+|||+++.|+..|++.++.+|+++ +
T Consensus 73 ---~~~l~~~v~~~g~~~~~e~~~~~~~adi~v~ps~--~e~~~~~~~Eama~G~PvI~~~~~~~~e~i~~~~~g~~~-~ 146 (177)
T 2f9f_A 73 ---MKIAPDNVKFLGSVSEEELIDLYSRCKGLLCTAK--DEDFGLTPIEAMASGKPVIAVNEGGFKETVINEKTGYLV-N 146 (177)
T ss_dssp ---HHHSCTTEEEEESCCHHHHHHHHHHCSEEEECCS--SCCSCHHHHHHHHTTCCEEEESSHHHHHHCCBTTTEEEE-C
T ss_pred ---hcccCCcEEEeCCCCHHHHHHHHHhCCEEEeCCC--cCCCChHHHHHHHcCCcEEEeCCCCHHHHhcCCCccEEe-C
Confidence 226788999999884 49999999999999997 899999999999999999999999999999999999999 7
Q ss_pred CCccHHHHHHHHHHhhcCHHH-HHHHHH
Q 004942 676 GHPGAQVLAQNLRYLLKNPSV-RERMAM 702 (722)
Q Consensus 676 ~d~~~e~LA~aI~~LL~np~~-r~~mg~ 702 (722)
+|+ ++|+++|.++++|++. ++++++
T Consensus 147 ~d~--~~l~~~i~~l~~~~~~~~~~~~~ 172 (177)
T 2f9f_A 147 ADV--NEIIDAMKKVSKNPDKFKKDCFR 172 (177)
T ss_dssp SCH--HHHHHHHHHHHHCTTTTHHHHHH
T ss_pred CCH--HHHHHHHHHHHhCHHHHHHHHHH
Confidence 887 9999999999999985 444433
No 26
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*
Probab=99.86 E-value=9.7e-21 Score=211.80 Aligned_cols=251 Identities=11% Similarity=0.061 Sum_probs=181.3
Q ss_pred ccccEEEEecHHhHHHHhhHHHhhhhhccCCCcccccCCCcccceEEeecCCCCCCCCCchhHHHHhhhhHHHHHHHhCC
Q 004942 360 DRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGL 439 (722)
Q Consensus 360 ~rvk~li~lS~~~~~~~~~~~~~~~i~l~~~~~vv~l~v~~~~~~v~vIpngid~~~f~~~~~~ekr~~~r~~~R~elgl 439 (722)
-..+.+.|.+......+...|...-........--.+........|.++|+|||+..|.+... + .+..+|++++
T Consensus 206 l~~DligF~t~~y~~~Fl~~~~r~l~g~~~~~~~~~v~~~gr~v~v~viP~GID~~~f~~~~~-~----~~~~lr~~~~- 279 (496)
T 3t5t_A 206 LPATTIGFFADRWCRNFLESVADLLPDARIDREAMTVEWRGHRTRLRTMPLGYSPLTLDGRNP-Q----LPEGIEEWAD- 279 (496)
T ss_dssp TTSSEEEESSHHHHHHHHHHHHHHCTTCEEETTTTEEEETTEEEEEEECCCCBCGGGC----C-C----CCTTHHHHHT-
T ss_pred HhCCEEEEecHHHHHHHHHHHHHHhcCCcccccCCeEEECCEEEEEEEeccEeCHHHhchhhH-H----HHHHHHHHhC-
Confidence 348889999988766677777432101011000001111233345789999999999976542 1 1255777777
Q ss_pred CCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCcccccc
Q 004942 440 TDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELS 519 (722)
Q Consensus 440 ~~~~~lIl~vGri~~~Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~ 519 (722)
+..+|+++||+.+.||++.+|+|+ .+.++.|+.
T Consensus 280 --~~~lIl~VgRLd~~KGi~~lL~Af-~ll~~~P~~-------------------------------------------- 312 (496)
T 3t5t_A 280 --GHRLVVHSGRTDPIKNAERAVRAF-VLAARGGGL-------------------------------------------- 312 (496)
T ss_dssp --TSEEEEEEEESSGGGCHHHHHHHH-HHHHHTSSC--------------------------------------------
T ss_pred --CceEEEEcccCccccCHHHHHHHH-HHHHhCccc--------------------------------------------
Confidence 578999999999999999999999 888887761
Q ss_pred ccchhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEEc-----CCchhHHHHHHhhhccCCCCCCchhHHHH
Q 004942 520 VSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSK-----SDGKQQQALKILIGSVGSKSNKVPYVKEI 594 (722)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~-----G~G~~~~~Lk~lI~~~Gs~sn~~~Y~~el 594 (722)
. ++.|+++ |+|++.+.++..+. ++
T Consensus 313 -------------------------------------~-~v~Lv~Vg~psr~~~~~y~~l~~~l~-------------~l 341 (496)
T 3t5t_A 313 -------------------------------------E-KTRMLVRMNPNRLYVPANADYVHRVE-------------TA 341 (496)
T ss_dssp -------------------------------------T-TEEEEEEEECCCTTSHHHHHHHHHHH-------------HH
T ss_pred -------------------------------------c-eEEEEEEECCCCCCchHHHHHHHHHH-------------HH
Confidence 0 1334444 46666655554442 12
Q ss_pred HHHHHhcCCCCCcEEeCCc--hhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhC---CCEEEcCCCChhhhhccCcc
Q 004942 595 LEFLSQHSNLSKAMLWTPA--TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFG---VPVLGTDAGGTKEIVEHNVT 669 (722)
Q Consensus 595 ~~~l~~~~~L~~~V~f~G~--~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~G---lPVVaTd~GG~~EIVe~g~t 669 (722)
...+...++.. .|.|+|. .+++..+|++||++|+||. .||||++++|||||| .|+|.|+.+|..+.+. .+
T Consensus 342 v~~in~~~g~~-~V~f~g~v~~~el~aly~~ADv~vv~Sl--rEGfgLv~~EamA~~~~~g~lVlSe~aGa~~~l~--~~ 416 (496)
T 3t5t_A 342 VAEANAELGSD-TVRIDNDNDVNHTIACFRRADLLIFNST--VDGQNLSTFEAPLVNERDADVILSETCGAAEVLG--EY 416 (496)
T ss_dssp HHHHHHHHCTT-SEEEEECCCHHHHHHHHHHCSEEEECCS--SBSCCSHHHHHHHHCSSCCEEEEETTBTTHHHHG--GG
T ss_pred HHHhccccCCc-CEEEeCCCCHHHHHHHHHhccEEEECcc--cccCChhHHHHHHhCCCCCCEEEeCCCCCHHHhC--CC
Confidence 22222121322 6899986 4789999999999999996 999999999999997 8999999998888884 36
Q ss_pred EEEECCCCccHHHHHHHHHHhhcCH-HHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 004942 670 GLLHPPGHPGAQVLAQNLRYLLKNP-SVRERMAMEGRKKSNGLAERHSLGRYC 721 (722)
Q Consensus 670 GlLvp~~d~~~e~LA~aI~~LL~np-~~r~~mg~~grk~ve~~~~~~~~~~Y~ 721 (722)
|++++|.|+ +++|++|..+|++| ++++++.+++++.+.+++...+++.|.
T Consensus 417 allVnP~D~--~~lA~AI~~aL~m~~~er~~r~~~~~~~V~~~d~~~W~~~fl 467 (496)
T 3t5t_A 417 CRSVNPFDL--VEQAEAISAALAAGPRQRAEAAARRRDAARPWTLEAWVQAQL 467 (496)
T ss_dssp SEEECTTBH--HHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCBHHHHHHHHH
T ss_pred EEEECCCCH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 999999999 99999999999865 789999999999999999888888775
No 27
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=99.86 E-value=3e-20 Score=213.55 Aligned_cols=128 Identities=18% Similarity=0.172 Sum_probs=101.1
Q ss_pred HHHHHHHHHhcCCCCCc------EEeCCc-h--------hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEc
Q 004942 591 VKEILEFLSQHSNLSKA------MLWTPA-T--------TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGT 655 (722)
Q Consensus 591 ~~el~~~l~~~~~L~~~------V~f~G~-~--------~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaT 655 (722)
.+.+++.+.+. ++.+. |.|++. . .++.++|+.||++|+||. +|+||++++||||||+|||+|
T Consensus 472 ~D~Il~~~r~l-~L~N~~~drVKVIf~P~~L~~~d~lf~~d~~~~~~~advfV~PS~--~EgfGl~~LEAmA~G~PvI~s 548 (725)
T 3nb0_A 472 NDLILNKIRQV-QLFNSPSDRVKMIFHPEFLNANNPILGLDYDEFVRGCHLGVFPSY--YEPWGYTPAECTVMGVPSITT 548 (725)
T ss_dssp GCHHHHHHHHH-TCCCCTTCSEEEEECCSCCCTTCSSSCCCHHHHHHHCSEEECCCS--SBSSCHHHHHHHHTTCCEEEE
T ss_pred ccHHHHHHHhc-CCCCCcCCceeEEEeccccCCCCccchhHHHHHHhhceEEEeccc--cCCCCHHHHHHHHcCCCEEEe
Confidence 34566666554 77666 677752 2 269999999999999997 999999999999999999999
Q ss_pred CCCChhhhhccC-------ccEEEECCCC-ccHHHH----HHHHHHhhc-CHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 004942 656 DAGGTKEIVEHN-------VTGLLHPPGH-PGAQVL----AQNLRYLLK-NPSVRERMAMEGRKKSNGLAERHSLGRYC 721 (722)
Q Consensus 656 d~GG~~EIVe~g-------~tGlLvp~~d-~~~e~L----A~aI~~LL~-np~~r~~mg~~grk~ve~~~~~~~~~~Y~ 721 (722)
+.||+.|+|.++ .+|+++++.+ .+++++ +++|..+++ ++..+++|+.++++.+++|+|+.++++|.
T Consensus 549 ~~gG~~d~V~dg~~~~~~~~tG~lV~~rd~~d~ee~aeaLa~aL~~f~~~d~~~r~~mr~~ar~~A~~FSWe~iA~~Yl 627 (725)
T 3nb0_A 549 NVSGFGSYMEDLIETNQAKDYGIYIVDRRFKAPDESVEQLVDYMEEFVKKTRRQRINQRNATEALSDLLDWKRMGLEYV 627 (725)
T ss_dssp TTBHHHHHHHTTSCHHHHHHTTEEEECCSSSCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHGGGGGBHHHHHHHHH
T ss_pred CCCChhhhhhccccccCCCCceEEEeCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999999999875 3799885432 122444 455544443 78889999999999999999999999986
No 28
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=99.85 E-value=4.4e-21 Score=200.20 Aligned_cols=322 Identities=15% Similarity=0.081 Sum_probs=194.4
Q ss_pred cEEEEEeCCCCCCcHHHHHHHHHHHHHhC-CCEEEEEEEcCCCCC-hhHHHhCCcEE-EEcCCc----c-----------
Q 004942 243 RKFILIFHELSMTGAPLSMMELATELLSC-GATVSAVVLSKRGGL-MPELARRKIKV-LEDRGE----P----------- 304 (722)
Q Consensus 243 kkillI~hels~gGaplsm~eLA~eL~s~-G~~VsvV~ls~~g~l-~~el~~~gI~V-l~~~~~----~----------- 304 (722)
+||++++.+.+.. ..+..|+++|.+. ||+|.+++....... ...+...|+.+ +..... .
T Consensus 6 mkIl~v~~~~~~~---~~~~~l~~~L~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (376)
T 1v4v_A 6 KRVVLAFGTRPEA---TKMAPVYLALRGIPGLKPLVLLTGQHREQLRQALSLFGIQEDRNLDVMQERQALPDLAARILPQ 82 (376)
T ss_dssp EEEEEEECSHHHH---HHHHHHHHHHHTSTTEEEEEEECSSCHHHHHHHHHTTTCCCSEECCCCSSCCCHHHHHHHHHHH
T ss_pred eEEEEEEeccHHH---HHHHHHHHHHHhCCCCceEEEEcCCcHHHHHHHHHHcCCCcccccccCCCCccHHHHHHHHHHH
Confidence 5888888654221 2356789999998 799887773221111 22344566654 333221 0
Q ss_pred --chhhhcCccEEEECCchhhHhHHHHHHhccCCCccEEEEEecchh-----HhHH-HHHhhh-ccccEEEEecHHhHHH
Q 004942 305 --SFKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRR-----EYFD-RAKLVL-DRVKLLVFLSESQTKQ 375 (722)
Q Consensus 305 --~~~~~~k~DlVia~Sav~~~wi~~~i~~~~~g~~~ivw~I~e~r~-----~yf~-~~k~~l-~rvk~li~lS~~~~~~ 375 (722)
++.++.+||+||+++.....|.....+ ...+.+ ++++.+.... .+.. .....+ ...+.+++.|+...+.
T Consensus 83 l~~~l~~~~pDvv~~~~~~~~~~~~~~~a-~~~~ip-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 160 (376)
T 1v4v_A 83 AARALKEMGADYVLVHGDTLTTFAVAWAA-FLEGIP-VGHVEAGLRSGNLKEPFPEEANRRLTDVLTDLDFAPTPLAKAN 160 (376)
T ss_dssp HHHHHHHTTCSEEEEESSCHHHHHHHHHH-HHTTCC-EEEETCCCCCSCTTSSTTHHHHHHHHHHHCSEEEESSHHHHHH
T ss_pred HHHHHHHcCCCEEEEeCChHHHHHHHHHH-HHhCCC-EEEEeCCCccccccCCCchHHHHHHHHHHhceeeCCCHHHHHH
Confidence 233478999999975433334323333 333444 4432211110 0001 111112 2366778888775332
Q ss_pred HhhHHHhhhhhccCCCcccccCCCcccceEEeecCCC-CCCCCCchhHHHHhhhhHHHHHHHhCCCCCCEEEEEEecCCC
Q 004942 376 WLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSL-NTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINP 454 (722)
Q Consensus 376 ~~~~~~~~~i~l~~~~~vv~l~v~~~~~~v~vIpngi-d~~~f~~~~~~ekr~~~r~~~R~elgl~~~~~lIl~vGri~~ 454 (722)
. .+.+..+ ..+.+++|+. |...+. . . +..+|+++ .+++++++++||+..
T Consensus 161 ----l----~~~g~~~-----------~ki~vi~n~~~d~~~~~--~---~----~~~~~~~~--~~~~~vl~~~gr~~~ 210 (376)
T 1v4v_A 161 ----L----LKEGKRE-----------EGILVTGQTGVDAVLLA--A---K----LGRLPEGL--PEGPYVTVTMHRREN 210 (376)
T ss_dssp ----H----HTTTCCG-----------GGEEECCCHHHHHHHHH--H---H----HCCCCTTC--CSSCEEEECCCCGGG
T ss_pred ----H----HHcCCCc-----------ceEEEECCchHHHHhhh--h---h----hhHHHHhc--CCCCEEEEEeCcccc
Confidence 2 1122211 1246777753 211110 0 0 01122333 245677888999988
Q ss_pred CCCHHHHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccchhhhccCCcccc
Q 004942 455 GKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRK 534 (722)
Q Consensus 455 ~Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (722)
.||++.+++|++.+.++.++
T Consensus 211 ~k~~~~ll~a~~~l~~~~~~------------------------------------------------------------ 230 (376)
T 1v4v_A 211 WPLLSDLAQALKRVAEAFPH------------------------------------------------------------ 230 (376)
T ss_dssp GGGHHHHHHHHHHHHHHCTT------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHhhCCC------------------------------------------------------------
Confidence 88999999999999776554
Q ss_pred cCCCCCcccccCCCCccccCCcccceeEEE-cCCch-hHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEeC-
Q 004942 535 NLLSPSLFTSIGNTDAVSFGSGHLRRKVLS-KSDGK-QQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWT- 611 (722)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~g~~~~~~~lli-~G~G~-~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~- 611 (722)
.++++ .|+|+ .++.++.++. . .++|.|+
T Consensus 231 -------------------------~~lv~~~g~~~~~~~~l~~~~~-----------------------~-~~~v~~~g 261 (376)
T 1v4v_A 231 -------------------------LTFVYPVHLNPVVREAVFPVLK-----------------------G-VRNFVLLD 261 (376)
T ss_dssp -------------------------SEEEEECCSCHHHHHHHHHHHT-----------------------T-CTTEEEEC
T ss_pred -------------------------eEEEEECCCCHHHHHHHHHHhc-----------------------c-CCCEEEEC
Confidence 23455 47765 4555555441 1 2579999
Q ss_pred --CchhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEc-CCCChhhhhccCccEEEECCCCccHHHHHHHHH
Q 004942 612 --PATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGT-DAGGTKEIVEHNVTGLLHPPGHPGAQVLAQNLR 688 (722)
Q Consensus 612 --G~~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaT-d~GG~~EIVe~g~tGlLvp~~d~~~e~LA~aI~ 688 (722)
|.. ++..+|++||++|.+| + | +++||||||+|||++ +.||..+++.++ +|++++ .|+ ++|+++|.
T Consensus 262 ~~g~~-~~~~~~~~ad~~v~~S----~--g-~~lEA~a~G~PvI~~~~~~~~~~~~~~g-~g~lv~-~d~--~~la~~i~ 329 (376)
T 1v4v_A 262 PLEYG-SMAALMRASLLLVTDS----G--G-LQEEGAALGVPVVVLRNVTERPEGLKAG-ILKLAG-TDP--EGVYRVVK 329 (376)
T ss_dssp CCCHH-HHHHHHHTEEEEEESC----H--H-HHHHHHHTTCCEEECSSSCSCHHHHHHT-SEEECC-SCH--HHHHHHHH
T ss_pred CCCHH-HHHHHHHhCcEEEECC----c--C-HHHHHHHcCCCEEeccCCCcchhhhcCC-ceEECC-CCH--HHHHHHHH
Confidence 445 8999999999999988 2 3 388999999999997 579999998765 799986 365 99999999
Q ss_pred HhhcCHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q 004942 689 YLLKNPSVRERMAMEGRKKSNGLAERHSLGRY 720 (722)
Q Consensus 689 ~LL~np~~r~~mg~~grk~ve~~~~~~~~~~Y 720 (722)
++++|++.+++|++++.+.......+.+++.+
T Consensus 330 ~ll~d~~~~~~~~~~~~~~~~~~~~~~i~~~i 361 (376)
T 1v4v_A 330 GLLENPEELSRMRKAKNPYGDGKAGLMVARGV 361 (376)
T ss_dssp HHHTCHHHHHHHHHSCCSSCCSCHHHHHHHHH
T ss_pred HHHhChHhhhhhcccCCCCCCChHHHHHHHHH
Confidence 99999999999987543332223444444433
No 29
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=99.76 E-value=6.3e-17 Score=170.50 Aligned_cols=111 Identities=16% Similarity=0.128 Sum_probs=95.9
Q ss_pred CCCCcEEeCCchhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCC----hhhhhccCccEEEECCCCc
Q 004942 603 NLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGG----TKEIVEHNVTGLLHPPGHP 678 (722)
Q Consensus 603 ~L~~~V~f~G~~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG----~~EIVe~g~tGlLvp~~d~ 678 (722)
.++++|.++|++ ++..+|..||++|..+ .+++++|||++|+|+|++..++ ..+.+.+..+|+++++++.
T Consensus 289 ~~~~~v~~~~~~-~~~~~l~~ad~~v~~~------g~~t~~Ea~a~G~P~v~~p~~~~q~~~~~~v~~~g~g~~~~~~~~ 361 (412)
T 3otg_A 289 EVPANVRLESWV-PQAALLPHVDLVVHHG------GSGTTLGALGAGVPQLSFPWAGDSFANAQAVAQAGAGDHLLPDNI 361 (412)
T ss_dssp CCCTTEEEESCC-CHHHHGGGCSEEEESC------CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECCGGGC
T ss_pred cCCCcEEEeCCC-CHHHHHhcCcEEEECC------chHHHHHHHHhCCCEEecCCchhHHHHHHHHHHcCCEEecCcccC
Confidence 345789999999 8999999999999766 3478999999999999977654 6778888889999998844
Q ss_pred cHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q 004942 679 GAQVLAQNLRYLLKNPSVRERMAMEGRKKSNGLAERHSLGRY 720 (722)
Q Consensus 679 ~~e~LA~aI~~LL~np~~r~~mg~~grk~ve~~~~~~~~~~Y 720 (722)
++++|+++|.++++||+.+++|++.+++..+.+.++.+++.+
T Consensus 362 ~~~~l~~ai~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (412)
T 3otg_A 362 SPDSVSGAAKRLLAEESYRAGARAVAAEIAAMPGPDEVVRLL 403 (412)
T ss_dssp CHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHSCCHHHHHTTH
T ss_pred CHHHHHHHHHHHHhCHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 559999999999999999999999999999888888877654
No 30
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=99.74 E-value=3.5e-16 Score=166.57 Aligned_cols=110 Identities=23% Similarity=0.232 Sum_probs=87.7
Q ss_pred CCcEEeCCchhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCCh--------hhhhccCccEEEECCC
Q 004942 605 SKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGT--------KEIVEHNVTGLLHPPG 676 (722)
Q Consensus 605 ~~~V~f~G~~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~--------~EIVe~g~tGlLvp~~ 676 (722)
..++.+.+++++++++|++||++|..+ -++++.|+|++|+|+|..+.+.. .+.+.+...|++++..
T Consensus 234 ~~~~~v~~f~~dm~~~l~~aDlvI~ra------G~~Tv~E~~a~G~P~Ilip~p~~~~~~Q~~NA~~l~~~G~a~~l~~~ 307 (365)
T 3s2u_A 234 AVEADVAPFISDMAAAYAWADLVICRA------GALTVSELTAAGLPAFLVPLPHAIDDHQTRNAEFLVRSGAGRLLPQK 307 (365)
T ss_dssp TCCCEEESCCSCHHHHHHHCSEEEECC------CHHHHHHHHHHTCCEEECC-----CCHHHHHHHHHHTTTSEEECCTT
T ss_pred ccccccccchhhhhhhhccceEEEecC------CcchHHHHHHhCCCeEEeccCCCCCcHHHHHHHHHHHCCCEEEeecC
Confidence 346778899999999999999999544 26889999999999998765432 2345555679999988
Q ss_pred CccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q 004942 677 HPGAQVLAQNLRYLLKNPSVRERMAMEGRKKSNGLAERHSLGRY 720 (722)
Q Consensus 677 d~~~e~LA~aI~~LL~np~~r~~mg~~grk~ve~~~~~~~~~~Y 720 (722)
+.+++.|+++|..+++||+.+++|++++++.......+.+++..
T Consensus 308 ~~~~~~L~~~i~~ll~d~~~~~~m~~~a~~~~~~~aa~~ia~~i 351 (365)
T 3s2u_A 308 STGAAELAAQLSEVLMHPETLRSMADQARSLAKPEATRTVVDAC 351 (365)
T ss_dssp TCCHHHHHHHHHHHHHCTHHHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 87779999999999999999999999999887666666666544
No 31
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=99.70 E-value=6e-16 Score=166.84 Aligned_cols=336 Identities=15% Similarity=0.153 Sum_probs=195.0
Q ss_pred hhhhccccEEEEEeCCCCCCcHHHHHHHHHHHHHhC-CCEEEEEEEcCCCCC---hhHHHhCCcE-EEEcCC--c--c--
Q 004942 236 FARFVWSRKFILIFHELSMTGAPLSMMELATELLSC-GATVSAVVLSKRGGL---MPELARRKIK-VLEDRG--E--P-- 304 (722)
Q Consensus 236 f~~~~~~kkillI~hels~gGaplsm~eLA~eL~s~-G~~VsvV~ls~~g~l---~~el~~~gI~-Vl~~~~--~--~-- 304 (722)
|++ |..+||++|+-+-+ | =+.+..|.++|.+. |+++.+++. .+.+ .+.+...+++ .+.+.. . .
T Consensus 20 ~~~-~~m~ki~~v~Gtr~--~-~~~~a~li~~l~~~~~~~~~~~~t--G~h~~~~~~~~~~~~i~~~~~l~~~~~~~~~~ 93 (396)
T 3dzc_A 20 FQS-NAMKKVLIVFGTRP--E-AIKMAPLVQQLCQDNRFVAKVCVT--GQHREMLDQVLELFSITPDFDLNIMEPGQTLN 93 (396)
T ss_dssp -----CCEEEEEEECSHH--H-HHHHHHHHHHHHHCTTEEEEEEEC--CSSSHHHHHHHHHTTCCCSEECCCCCTTCCHH
T ss_pred HHh-CCCCeEEEEEeccH--h-HHHHHHHHHHHHhCCCCcEEEEEe--cccHHHHHHHHHhcCCCCceeeecCCCCCCHH
Confidence 444 66679998875322 1 12367788999886 788876662 1222 1234567773 233322 1 1
Q ss_pred -----------chhhhcCccEEEECCchhhHhHHHHHHhccCCCccEEEEEecch-----hHhHHH-HHhhhcc-ccEEE
Q 004942 305 -----------SFKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENR-----REYFDR-AKLVLDR-VKLLV 366 (722)
Q Consensus 305 -----------~~~~~~k~DlVia~Sav~~~wi~~~i~~~~~g~~~ivw~I~e~r-----~~yf~~-~k~~l~r-vk~li 366 (722)
++..+.+||+|+++......|. ..++.+..+.+ ++......+ ..+... ....+.+ .+.++
T Consensus 94 ~~~~~~~~~l~~~l~~~kPDvVi~~g~~~~~~~-~~~aa~~~~IP-v~h~~ag~rs~~~~~~~~~~~~r~~~~~~a~~~~ 171 (396)
T 3dzc_A 94 GVTSKILLGMQQVLSSEQPDVVLVHGDTATTFA-ASLAAYYQQIP-VGHVEAGLRTGNIYSPWPEEGNRKLTAALTQYHF 171 (396)
T ss_dssp HHHHHHHHHHHHHHHHHCCSEEEEETTSHHHHH-HHHHHHTTTCC-EEEETCCCCCSCTTSSTTHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECCchhHHH-HHHHHHHhCCC-EEEEECCccccccccCCcHHHHHHHHHHhcCEEE
Confidence 3444889999988754333333 23444445555 433211000 011111 1112233 45566
Q ss_pred EecHHhHHHHhhHHHhhhhhccCCCcccccCCCcccceEEeecCC-CCCCCCCchhHHHHhhhhHHHHHHHhC-CCC-CC
Q 004942 367 FLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCS-LNTPTSSPEKMREKRNLLRDSVRKEMG-LTD-QD 443 (722)
Q Consensus 367 ~lS~~~~~~~~~~~~~~~i~l~~~~~vv~l~v~~~~~~v~vIpng-id~~~f~~~~~~ekr~~~r~~~R~elg-l~~-~~ 443 (722)
+.++...+. . ++.+..+ + .+.+++|. +|...+.+... +....++..+|+++| ++. ++
T Consensus 172 ~~se~~~~~----l----~~~G~~~--------~---ki~vvGn~~~d~~~~~~~~~-~~~~~~~~~~r~~lg~l~~~~~ 231 (396)
T 3dzc_A 172 APTDTSRAN----L----LQENYNA--------E---NIFVTGNTVIDALLAVREKI-HTDMDLQATLESQFPMLDASKK 231 (396)
T ss_dssp ESSHHHHHH----H----HHTTCCG--------G---GEEECCCHHHHHHHHHHHHH-HHCHHHHHHHHHTCTTCCTTSE
T ss_pred CCCHHHHHH----H----HHcCCCc--------C---cEEEECCcHHHHHHHhhhhc-ccchhhHHHHHHHhCccCCCCC
Confidence 666664222 1 1223322 1 24566653 23211111110 000112467889999 444 45
Q ss_pred EEEEEEecC-CCCCCHHHHHHHHHHhHHhCCCCcchhhhhccccccccCcccccccccccccccccccccCccccccccc
Q 004942 444 MLVLSLSSI-NPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSS 522 (722)
Q Consensus 444 ~lIl~vGri-~~~Kg~~~LleA~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~~~~~~~~~~~~~~~~ 522 (722)
+++++.+|. +.+|++..+++|++.+.++.|+
T Consensus 232 ~vlv~~hR~~~~~~~~~~ll~A~~~l~~~~~~------------------------------------------------ 263 (396)
T 3dzc_A 232 LILVTGHRRESFGGGFERICQALITTAEQHPE------------------------------------------------ 263 (396)
T ss_dssp EEEEECSCBCCCTTHHHHHHHHHHHHHHHCTT------------------------------------------------
T ss_pred EEEEEECCcccchhHHHHHHHHHHHHHHhCCC------------------------------------------------
Confidence 555556564 4568899999999999877665
Q ss_pred hhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEE-cCCchh-HHHHHHhhhccCCCCCCchhHHHHHHHHHh
Q 004942 523 ESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLS-KSDGKQ-QQALKILIGSVGSKSNKVPYVKEILEFLSQ 600 (722)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli-~G~G~~-~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~ 600 (722)
.++++ .|.++. ++.++.++
T Consensus 264 -------------------------------------~~~v~~~g~~~~~~~~l~~~~---------------------- 284 (396)
T 3dzc_A 264 -------------------------------------CQILYPVHLNPNVREPVNKLL---------------------- 284 (396)
T ss_dssp -------------------------------------EEEEEECCBCHHHHHHHHHHT----------------------
T ss_pred -------------------------------------ceEEEEeCCChHHHHHHHHHH----------------------
Confidence 23444 455532 23333221
Q ss_pred cCCCCCcEEeCCch--hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEc-CCCChhhhhccCccEEEECCCC
Q 004942 601 HSNLSKAMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGT-DAGGTKEIVEHNVTGLLHPPGH 677 (722)
Q Consensus 601 ~~~L~~~V~f~G~~--~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaT-d~GG~~EIVe~g~tGlLvp~~d 677 (722)
+...+|.++++. .++..+|+.||++|.+| + | +++|||++|+|||++ +.++.+|++++| ++++++. |
T Consensus 285 --~~~~~v~~~~~lg~~~~~~l~~~ad~vv~~S---G---g-~~~EA~a~G~PvV~~~~~~~~~e~v~~G-~~~lv~~-d 353 (396)
T 3dzc_A 285 --KGVSNIVLIEPQQYLPFVYLMDRAHIILTDS---G---G-IQEEAPSLGKPVLVMRETTERPEAVAAG-TVKLVGT-N 353 (396)
T ss_dssp --TTCTTEEEECCCCHHHHHHHHHHCSEEEESC---S---G-GGTTGGGGTCCEEECCSSCSCHHHHHHT-SEEECTT-C
T ss_pred --cCCCCEEEeCCCCHHHHHHHHHhcCEEEECC---c---c-HHHHHHHcCCCEEEccCCCcchHHHHcC-ceEEcCC-C
Confidence 334589997765 57889999999999888 2 3 348999999999999 789999999887 5777764 5
Q ss_pred ccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhcHHHHHHH
Q 004942 678 PGAQVLAQNLRYLLKNPSVRERMAMEGRKKSNGLAERHSLGR 719 (722)
Q Consensus 678 ~~~e~LA~aI~~LL~np~~r~~mg~~grk~ve~~~~~~~~~~ 719 (722)
+ ++|++++..+++|++.+++|++++.......+.+.+++.
T Consensus 354 ~--~~l~~ai~~ll~d~~~~~~m~~~~~~~~~~~aa~ri~~~ 393 (396)
T 3dzc_A 354 Q--QQICDALSLLLTDPQAYQAMSQAHNPYGDGKACQRIADI 393 (396)
T ss_dssp H--HHHHHHHHHHHHCHHHHHHHHTSCCTTCCSCHHHHHHHH
T ss_pred H--HHHHHHHHHHHcCHHHHHHHhhccCCCcCChHHHHHHHH
Confidence 5 999999999999999999998876544333444444443
No 32
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=99.69 E-value=7.9e-15 Score=156.24 Aligned_cols=111 Identities=13% Similarity=0.139 Sum_probs=92.5
Q ss_pred CCCcEEeCCchhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCC----hhhhhccCccEEEECCCCcc
Q 004942 604 LSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGG----TKEIVEHNVTGLLHPPGHPG 679 (722)
Q Consensus 604 L~~~V~f~G~~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG----~~EIVe~g~tGlLvp~~d~~ 679 (722)
++++|.++|+.++. ++|+.||++|..+ -+++++|||++|+|+|+++.++ ..+.+.+...|++++.++.+
T Consensus 281 ~~~~v~~~~~~~~~-~~l~~ad~~v~~~------G~~t~~Ea~~~G~P~i~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~ 353 (430)
T 2iyf_A 281 LPDNVEVHDWVPQL-AILRQADLFVTHA------GAGGSQEGLATATPMIAVPQAVDQFGNADMLQGLGVARKLATEEAT 353 (430)
T ss_dssp CCTTEEEESSCCHH-HHHTTCSEEEECC------CHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHTTSEEECCCC-CC
T ss_pred CCCCeEEEecCCHH-HHhhccCEEEECC------CccHHHHHHHhCCCEEECCCccchHHHHHHHHHcCCEEEcCCCCCC
Confidence 45689999998777 8999999999765 2378999999999999998765 45666667789999888555
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 004942 680 AQVLAQNLRYLLKNPSVRERMAMEGRKKSNGLAERHSLGRYC 721 (722)
Q Consensus 680 ~e~LA~aI~~LL~np~~r~~mg~~grk~ve~~~~~~~~~~Y~ 721 (722)
+++|+++|..+++|++.+++|++.+++..+...++..++.+.
T Consensus 354 ~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 395 (430)
T 2iyf_A 354 ADLLRETALALVDDPEVARRLRRIQAEMAQEGGTRRAADLIE 395 (430)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 599999999999999999999999998887777777777654
No 33
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=99.68 E-value=2.6e-16 Score=166.32 Aligned_cols=112 Identities=13% Similarity=0.107 Sum_probs=90.3
Q ss_pred CCCCcEEeCCchhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEc----CCCChhhhhccCccEEEECCCCc
Q 004942 603 NLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGT----DAGGTKEIVEHNVTGLLHPPGHP 678 (722)
Q Consensus 603 ~L~~~V~f~G~~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaT----d~GG~~EIVe~g~tGlLvp~~d~ 678 (722)
.++++|.++|+. ++..++..||++|..+ .+++++|||++|+|+|+. +..+..+.+++...|+++++++.
T Consensus 281 ~~~~~v~~~~~~-~~~~ll~~ad~~v~~g------G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~g~g~~~~~~~~ 353 (398)
T 4fzr_A 281 PLPEGVLAAGQF-PLSAIMPACDVVVHHG------GHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGVEVPWEQA 353 (398)
T ss_dssp -CCTTEEEESCC-CHHHHGGGCSEEEECC------CHHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHTTSEEECC----
T ss_pred cCCCcEEEeCcC-CHHHHHhhCCEEEecC------CHHHHHHHHHhCCCEEecCCchhHHHHHHHHHHcCCEEecCcccC
Confidence 345789999998 6899999999999544 468899999999999995 44477788888889999988755
Q ss_pred cHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 004942 679 GAQVLAQNLRYLLKNPSVRERMAMEGRKKSNGLAERHSLGRYC 721 (722)
Q Consensus 679 ~~e~LA~aI~~LL~np~~r~~mg~~grk~ve~~~~~~~~~~Y~ 721 (722)
+++.|+++|.++++||+.+++|++.+++......++.+++.+.
T Consensus 354 ~~~~l~~ai~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 396 (398)
T 4fzr_A 354 GVESVLAACARIRDDSSYVGNARRLAAEMATLPTPADIVRLIE 396 (398)
T ss_dssp ---CHHHHHHHHHHCTHHHHHHHHHHHHHTTSCCHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 5589999999999999999999999999888888888877653
No 34
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=99.61 E-value=7.1e-15 Score=159.15 Aligned_cols=103 Identities=23% Similarity=0.247 Sum_probs=83.4
Q ss_pred CCcEEeCCch--hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEc-CCCChhhhhccCccEEEECCCCccHH
Q 004942 605 SKAMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGT-DAGGTKEIVEHNVTGLLHPPGHPGAQ 681 (722)
Q Consensus 605 ~~~V~f~G~~--~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaT-d~GG~~EIVe~g~tGlLvp~~d~~~e 681 (722)
..+|.++++. .++..+|++||++|.+| |.+.+|||++|+|||++ +.|+.+|++++| +|++++. |+ +
T Consensus 281 ~~~v~l~~~l~~~~~~~l~~~ad~vv~~S-------Gg~~~EA~a~g~PvV~~~~~~~~~e~v~~g-~~~lv~~-d~--~ 349 (403)
T 3ot5_A 281 HERIHLIEPLDAIDFHNFLRKSYLVFTDS-------GGVQEEAPGMGVPVLVLRDTTERPEGIEAG-TLKLIGT-NK--E 349 (403)
T ss_dssp CTTEEEECCCCHHHHHHHHHHEEEEEECC-------HHHHHHGGGTTCCEEECCSSCSCHHHHHHT-SEEECCS-CH--H
T ss_pred CCCEEEeCCCCHHHHHHHHHhcCEEEECC-------ccHHHHHHHhCCCEEEecCCCcchhheeCC-cEEEcCC-CH--H
Confidence 3589999976 48999999999999777 34559999999999999 789999999876 8888875 65 9
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHhhcHHHHHH
Q 004942 682 VLAQNLRYLLKNPSVRERMAMEGRKKSNGLAERHSLG 718 (722)
Q Consensus 682 ~LA~aI~~LL~np~~r~~mg~~grk~ve~~~~~~~~~ 718 (722)
++++++..+++|++.+++|+.++.......+.+.+++
T Consensus 350 ~l~~ai~~ll~~~~~~~~m~~~~~~~g~~~aa~rI~~ 386 (403)
T 3ot5_A 350 NLIKEALDLLDNKESHDKMAQAANPYGDGFAANRILA 386 (403)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHSCCTTCCSCHHHHHHH
T ss_pred HHHHHHHHHHcCHHHHHHHHhhcCcccCCcHHHHHHH
Confidence 9999999999999999999876544433344444443
No 35
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=99.61 E-value=4.8e-15 Score=155.70 Aligned_cols=111 Identities=7% Similarity=0.068 Sum_probs=90.1
Q ss_pred CCCCcEEeCCchhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCC----CChhhhhccCccEEEECC--C
Q 004942 603 NLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA----GGTKEIVEHNVTGLLHPP--G 676 (722)
Q Consensus 603 ~L~~~V~f~G~~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~----GG~~EIVe~g~tGlLvp~--~ 676 (722)
+++.+|.+.|+. +...++..||++|..+ .+++++|||++|+|+|+... .+..+.+.+...|+++++ .
T Consensus 267 ~~~~~v~~~~~~-~~~~ll~~ad~~v~~~------G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~g~g~~~~~~~~ 339 (391)
T 3tsa_A 267 DLPDNARIAESV-PLNLFLRTCELVICAG------GSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAAGAGICLPDEQA 339 (391)
T ss_dssp TCCTTEEECCSC-CGGGTGGGCSEEEECC------CHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTTSEEECCSHHH
T ss_pred cCCCCEEEeccC-CHHHHHhhCCEEEeCC------CHHHHHHHHHhCCCEEecCCcccHHHHHHHHHHcCCEEecCcccc
Confidence 345789999987 4556789999999544 45789999999999999544 456677888889999998 3
Q ss_pred CccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q 004942 677 HPGAQVLAQNLRYLLKNPSVRERMAMEGRKKSNGLAERHSLGRY 720 (722)
Q Consensus 677 d~~~e~LA~aI~~LL~np~~r~~mg~~grk~ve~~~~~~~~~~Y 720 (722)
+.+++.|+++|..+++||+.+++|++.+++......++..++.+
T Consensus 340 ~~~~~~l~~ai~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 383 (391)
T 3tsa_A 340 QSDHEQFTDSIATVLGDTGFAAAAIKLSDEITAMPHPAALVRTL 383 (391)
T ss_dssp HTCHHHHHHHHHHHHTCTHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 33449999999999999999999999999888877777777654
No 36
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=99.57 E-value=1.8e-13 Score=143.01 Aligned_cols=110 Identities=18% Similarity=0.157 Sum_probs=90.1
Q ss_pred CCCcEEeCCchhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEc-----CCCChhhhhccCccEEEECCCCc
Q 004942 604 LSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGT-----DAGGTKEIVEHNVTGLLHPPGHP 678 (722)
Q Consensus 604 L~~~V~f~G~~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaT-----d~GG~~EIVe~g~tGlLvp~~d~ 678 (722)
++++|.+.|+.++. +++..||++|..+- ..+++|||++|+|+|+. +..+..+.+.+...|.+++.++.
T Consensus 279 ~~~~v~~~~~~~~~-~ll~~ad~~v~~~G------~~t~~Ea~~~G~P~v~~p~~~~~q~~~a~~~~~~g~g~~~~~~~~ 351 (402)
T 3ia7_A 279 LPPNVEAHQWIPFH-SVLAHARACLTHGT------TGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSVLRPDQL 351 (402)
T ss_dssp CCTTEEEESCCCHH-HHHTTEEEEEECCC------HHHHHHHHHTTCCEEECGGGCGGGHHHHHHHHHTTSEEECCGGGC
T ss_pred CCCcEEEecCCCHH-HHHhhCCEEEECCC------HHHHHHHHHhCCCEEEeCCCcccHHHHHHHHHHcCCEEEccCCCC
Confidence 45789999998777 99999999997662 36789999999999954 44467777888889999988755
Q ss_pred cHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q 004942 679 GAQVLAQNLRYLLKNPSVRERMAMEGRKKSNGLAERHSLGRY 720 (722)
Q Consensus 679 ~~e~LA~aI~~LL~np~~r~~mg~~grk~ve~~~~~~~~~~Y 720 (722)
+++.|++++.++++|++.+++|++.+++.......+..++.+
T Consensus 352 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 393 (402)
T 3ia7_A 352 EPASIREAVERLAADSAVRERVRRMQRDILSSGGPARAADEV 393 (402)
T ss_dssp SHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhCChHHHHHHHH
Confidence 569999999999999999999998888877666666665543
No 37
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=99.55 E-value=8.1e-14 Score=147.51 Aligned_cols=107 Identities=19% Similarity=0.178 Sum_probs=89.6
Q ss_pred CCCCcEEeCCchhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEE----cCCCChh--hhhccCccEEEECCC
Q 004942 603 NLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLG----TDAGGTK--EIVEHNVTGLLHPPG 676 (722)
Q Consensus 603 ~L~~~V~f~G~~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVa----Td~GG~~--EIVe~g~tGlLvp~~ 676 (722)
+++++|.+.|++ ++..++..||++|..+ .+.+++|||++|+|+|+ .+..+.. +.+++...|++++.+
T Consensus 280 ~~~~~v~~~~~~-~~~~ll~~ad~~v~~~------G~~t~~Eal~~G~P~v~~p~~~dq~~~a~~~~~~~~g~g~~~~~~ 352 (398)
T 3oti_A 280 TLPRNVRAVGWT-PLHTLLRTCTAVVHHG------GGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIGLVSTSD 352 (398)
T ss_dssp SCCTTEEEESSC-CHHHHHTTCSEEEECC------CHHHHHHHHHHTCCEEECCCTTCCSSCTTHHHHHHHTSEEECCGG
T ss_pred cCCCcEEEEccC-CHHHHHhhCCEEEECC------CHHHHHHHHHhCCCEEEcCCCchhHHHHHHHHHHHCCCEEeeCCC
Confidence 456789999998 8999999999999543 45789999999999999 6668888 999888899999877
Q ss_pred CccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q 004942 677 HPGAQVLAQNLRYLLKNPSVRERMAMEGRKKSNGLAERHSLGRY 720 (722)
Q Consensus 677 d~~~e~LA~aI~~LL~np~~r~~mg~~grk~ve~~~~~~~~~~Y 720 (722)
+.+++.|+ ++++||+.+++|++.+++......+..+++.+
T Consensus 353 ~~~~~~l~----~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 392 (398)
T 3oti_A 353 KVDADLLR----RLIGDESLRTAAREVREEMVALPTPAETVRRI 392 (398)
T ss_dssp GCCHHHHH----HHHHCHHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred CCCHHHHH----HHHcCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 65445555 88999999999999999988888887777654
No 38
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=99.49 E-value=4.7e-12 Score=134.00 Aligned_cols=111 Identities=14% Similarity=0.121 Sum_probs=88.8
Q ss_pred CCCCcEEeCCchhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcC----CCChhhhhccCccEEEECCCCc
Q 004942 603 NLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTD----AGGTKEIVEHNVTGLLHPPGHP 678 (722)
Q Consensus 603 ~L~~~V~f~G~~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd----~GG~~EIVe~g~tGlLvp~~d~ 678 (722)
.++++|.+.++.... .++..||++|..+ -..+++|||++|+|+|+.. .....+.+.+...|..++.++.
T Consensus 294 ~~~~~v~~~~~~~~~-~ll~~ad~~v~~~------G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~l~~~g~g~~~~~~~~ 366 (415)
T 3rsc_A 294 DLPPNVEAHRWVPHV-KVLEQATVCVTHG------GMGTLMEALYWGRPLVVVPQSFDVQPMARRVDQLGLGAVLPGEKA 366 (415)
T ss_dssp CCCTTEEEESCCCHH-HHHHHEEEEEESC------CHHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHHTCEEECCGGGC
T ss_pred CCCCcEEEEecCCHH-HHHhhCCEEEECC------cHHHHHHHHHhCCCEEEeCCcchHHHHHHHHHHcCCEEEcccCCC
Confidence 345789999988776 9999999999766 2367899999999999954 3445667777778998888755
Q ss_pred cHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q 004942 679 GAQVLAQNLRYLLKNPSVRERMAMEGRKKSNGLAERHSLGRY 720 (722)
Q Consensus 679 ~~e~LA~aI~~LL~np~~r~~mg~~grk~ve~~~~~~~~~~Y 720 (722)
+++.|+++|.++++|++.+++|.+.+++.......+..++..
T Consensus 367 ~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 408 (415)
T 3rsc_A 367 DGDTLLAAVGAVAADPALLARVEAMRGHVRRAGGAARAADAV 408 (415)
T ss_dssp CHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 669999999999999999999988888877666666655543
No 39
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=99.49 E-value=3.7e-12 Score=135.90 Aligned_cols=107 Identities=12% Similarity=0.044 Sum_probs=88.1
Q ss_pred cEEeCCch--hhHHHHHHHcCEEEEcCCC-----CCCCccHHHHHHHHhCCCEEEcCCCChhhhhccCccEEEECCCCcc
Q 004942 607 AMLWTPAT--TRVASLYSAADVYVINSQG-----LGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGHPG 679 (722)
Q Consensus 607 ~V~f~G~~--~dv~~lysaADv~V~pS~~-----l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g~tGlLvp~~d~~ 679 (722)
+|.|+|.+ ++++.+|+.+|+.++...+ +...+|.+++||||||+|||+++.|+..|+|+++.+|+.++ +.
T Consensus 215 nV~f~G~~~~~el~~~l~~~~~~lv~~~~~~~~y~~~~~P~Kl~eymA~G~PVI~~~~~~~~~~v~~~~~G~~~~--~~- 291 (339)
T 3rhz_A 215 NVHKINYRPDEQLLMEMSQGGFGLVWMDDKDKEYQSLYCSYKLGSFLAAGIPVIVQEGIANQELIENNGLGWIVK--DV- 291 (339)
T ss_dssp TEEEEECCCHHHHHHHHHTEEEEECCCCGGGHHHHTTCCCHHHHHHHHHTCCEEEETTCTTTHHHHHHTCEEEES--SH-
T ss_pred CEEEeCCCCHHHHHHHHHhCCEEEEECCCchhHHHHhcChHHHHHHHHcCCCEEEccChhHHHHHHhCCeEEEeC--CH-
Confidence 89999976 7899999988887776211 01356999999999999999999999999999999999997 34
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhcHHHHHHH
Q 004942 680 AQVLAQNLRYLLKNPSVRERMAMEGRKKSNGLAERHSLGR 719 (722)
Q Consensus 680 ~e~LA~aI~~LL~np~~r~~mg~~grk~ve~~~~~~~~~~ 719 (722)
++++++|..+ +++.+++|++++++.++++.+.+..++
T Consensus 292 -~e~~~~i~~l--~~~~~~~m~~na~~~a~~~~~~~f~k~ 328 (339)
T 3rhz_A 292 -EEAIMKVKNV--NEDEYIELVKNVRSFNPILRKGFFTRR 328 (339)
T ss_dssp -HHHHHHHHHC--CHHHHHHHHHHHHHHTHHHHTTHHHHH
T ss_pred -HHHHHHHHHh--CHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 8899999887 467899999999998877665555443
No 40
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=99.46 E-value=2.5e-11 Score=127.31 Aligned_cols=105 Identities=17% Similarity=0.139 Sum_probs=83.8
Q ss_pred CCcEEeCCchhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCC----hhhhhccCccEEEECCCCccH
Q 004942 605 SKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGG----TKEIVEHNVTGLLHPPGHPGA 680 (722)
Q Consensus 605 ~~~V~f~G~~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG----~~EIVe~g~tGlLvp~~d~~~ 680 (722)
+++|.+ |+. +..++|..||++|..+ .+++++|||++|+|+|+...++ ..+.+++...|+++++.+.++
T Consensus 263 ~~~v~~-~~~-~~~~~l~~~d~~v~~~------G~~t~~Ea~~~G~P~v~~p~~~dq~~~a~~~~~~g~g~~~~~~~~~~ 334 (384)
T 2p6p_A 263 VPQARV-GWT-PLDVVAPTCDLLVHHA------GGVSTLTGLSAGVPQLLIPKGSVLEAPARRVADYGAAIALLPGEDST 334 (384)
T ss_dssp CTTSEE-ECC-CHHHHGGGCSEEEECS------CTTHHHHHHHTTCCEEECCCSHHHHHHHHHHHHHTSEEECCTTCCCH
T ss_pred CCceEE-cCC-CHHHHHhhCCEEEeCC------cHHHHHHHHHhCCCEEEccCcccchHHHHHHHHCCCeEecCcCCCCH
Confidence 457888 887 5688999999999765 3468999999999999998754 666676667899988776566
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhcHHHHH
Q 004942 681 QVLAQNLRYLLKNPSVRERMAMEGRKKSNGLAERHSL 717 (722)
Q Consensus 681 e~LA~aI~~LL~np~~r~~mg~~grk~ve~~~~~~~~ 717 (722)
+.|+++|.++++|++.+++|++.+.+....-..+..+
T Consensus 335 ~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (384)
T 2p6p_A 335 EAIADSCQELQAKDTYARRAQDLSREISGMPLPATVV 371 (384)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 9999999999999999999988887776544444433
No 41
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=99.28 E-value=1.3e-10 Score=125.35 Aligned_cols=110 Identities=15% Similarity=0.092 Sum_probs=89.0
Q ss_pred CCCCcEEeCCchhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCC----hhhhhccCccEEEECCCCc
Q 004942 603 NLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGG----TKEIVEHNVTGLLHPPGHP 678 (722)
Q Consensus 603 ~L~~~V~f~G~~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG----~~EIVe~g~tGlLvp~~d~ 678 (722)
+++++|.+.++... ..+|..||++|... .+++++|||++|+|+|+....+ ..+.+++...|++++..+.
T Consensus 316 ~~~~~v~~~~~~~~-~~ll~~ad~~V~~~------G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~ 388 (441)
T 2yjn_A 316 NIPDNVRTVGFVPM-HALLPTCAATVHHG------GPGSWHTAAIHGVPQVILPDGWDTGVRAQRTQEFGAGIALPVPEL 388 (441)
T ss_dssp SCCSSEEECCSCCH-HHHGGGCSEEEECC------CHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHHTSEEECCTTTC
T ss_pred cCCCCEEEecCCCH-HHHHhhCCEEEECC------CHHHHHHHHHhCCCEEEeCCcccHHHHHHHHHHcCCEEEcccccC
Confidence 34578999998866 78899999999643 3578999999999999998743 5566666678999988766
Q ss_pred cHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhcHHHHHHH
Q 004942 679 GAQVLAQNLRYLLKNPSVRERMAMEGRKKSNGLAERHSLGR 719 (722)
Q Consensus 679 ~~e~LA~aI~~LL~np~~r~~mg~~grk~ve~~~~~~~~~~ 719 (722)
+++.|+++|.++++|++.+++|.+.+++.......+.+++.
T Consensus 389 ~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (441)
T 2yjn_A 389 TPDQLRESVKRVLDDPAHRAGAARMRDDMLAEPSPAEVVGI 429 (441)
T ss_dssp CHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 66999999999999999999999888877766665555543
No 42
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=99.18 E-value=1.4e-09 Score=113.94 Aligned_cols=95 Identities=19% Similarity=0.200 Sum_probs=70.7
Q ss_pred CCCCcEEeCCchhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCC----hhhhhccCccEEEECCCCc
Q 004942 603 NLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGG----TKEIVEHNVTGLLHPPGHP 678 (722)
Q Consensus 603 ~L~~~V~f~G~~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG----~~EIVe~g~tGlLvp~~d~ 678 (722)
.++++|.+.+.. +...+|..+|++|.- +-.+++.|||++|+|+|+....+ ..+.+++...|+..+..+.
T Consensus 285 ~~~~~v~~~~~~-p~~~lL~~~~~~v~h------~G~~s~~Eal~~GvP~v~~P~~~dQ~~na~~v~~~G~g~~l~~~~~ 357 (400)
T 4amg_A 285 ELPANVRVVEWI-PLGALLETCDAIIHH------GGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLTGLGIGFDAEAGSL 357 (400)
T ss_dssp CCCTTEEEECCC-CHHHHHTTCSEEEEC------CCHHHHHHHHHHTCCEEECCC---CHHHHHHHHHHTSEEECCTTTC
T ss_pred cCCCCEEEEeec-CHHHHhhhhhheecc------CCccHHHHHHHhCCCEEEecCcccHHHHHHHHHHCCCEEEcCCCCc
Confidence 566788888876 567899999998843 34568999999999999965543 4555655557887776665
Q ss_pred cHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 004942 679 GAQVLAQNLRYLLKNPSVRERMAMEGRKKS 708 (722)
Q Consensus 679 ~~e~LA~aI~~LL~np~~r~~mg~~grk~v 708 (722)
++++|+++|+||+.|+++.+-+.+..
T Consensus 358 ----~~~al~~lL~d~~~r~~a~~l~~~~~ 383 (400)
T 4amg_A 358 ----GAEQCRRLLDDAGLREAALRVRQEMS 383 (400)
T ss_dssp ----SHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred ----hHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 67899999999998887766555544
No 43
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=99.17 E-value=1e-10 Score=126.39 Aligned_cols=86 Identities=19% Similarity=0.194 Sum_probs=68.2
Q ss_pred CcEEeCCch--hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCC-CChhhhhccCccEEEECCCCccHHH
Q 004942 606 KAMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDA-GGTKEIVEHNVTGLLHPPGHPGAQV 682 (722)
Q Consensus 606 ~~V~f~G~~--~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~-GG~~EIVe~g~tGlLvp~~d~~~e~ 682 (722)
.+|.+++.. .++..+|+.||+++..| |.++.||+++|+|||.... ++.+|.++.| ++++++. |+ +.
T Consensus 263 ~~v~l~~~lg~~~~~~l~~~adlvvt~S-------Ggv~~EA~alG~Pvv~~~~~ter~e~v~~G-~~~lv~~-d~--~~ 331 (385)
T 4hwg_A 263 DKIRFLPAFSFTDYVKLQMNAFCILSDS-------GTITEEASILNLPALNIREAHERPEGMDAG-TLIMSGF-KA--ER 331 (385)
T ss_dssp GGEEECCCCCHHHHHHHHHHCSEEEECC-------TTHHHHHHHTTCCEEECSSSCSCTHHHHHT-CCEECCS-SH--HH
T ss_pred CCEEEEcCCCHHHHHHHHHhCcEEEECC-------ccHHHHHHHcCCCEEEcCCCccchhhhhcC-ceEEcCC-CH--HH
Confidence 578887754 47899999999999666 3468999999999999765 4467888876 6677653 55 99
Q ss_pred HHHHHHHhhcCHHHHHHHHH
Q 004942 683 LAQNLRYLLKNPSVRERMAM 702 (722)
Q Consensus 683 LA~aI~~LL~np~~r~~mg~ 702 (722)
+++++..+++|+..+++|+.
T Consensus 332 i~~ai~~ll~d~~~~~~m~~ 351 (385)
T 4hwg_A 332 VLQAVKTITEEHDNNKRTQG 351 (385)
T ss_dssp HHHHHHHHHTTCBTTBCCSC
T ss_pred HHHHHHHHHhChHHHHHhhc
Confidence 99999999999887665544
No 44
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=99.13 E-value=1e-08 Score=109.41 Aligned_cols=105 Identities=16% Similarity=0.181 Sum_probs=81.2
Q ss_pred CCCcEEeCCchhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCC----hhhhhccCccEEEECCCCcc
Q 004942 604 LSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGG----TKEIVEHNVTGLLHPPGHPG 679 (722)
Q Consensus 604 L~~~V~f~G~~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG----~~EIVe~g~tGlLvp~~d~~ 679 (722)
++++|.+.++..+. .+|..||++|..+ -.++++|||++|+|+|+....+ ..+.+.+...|+.++..+.+
T Consensus 303 ~~~~v~~~~~~~~~-~~l~~~d~~v~~~------G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~ 375 (424)
T 2iya_A 303 VPPNVEVHQWVPQL-DILTKASAFITHA------GMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELGLGRHIPRDQVT 375 (424)
T ss_dssp CCTTEEEESSCCHH-HHHTTCSEEEECC------CHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHTTSEEECCGGGCC
T ss_pred CCCCeEEecCCCHH-HHHhhCCEEEECC------chhHHHHHHHcCCCEEEecCccchHHHHHHHHHCCCEEEcCcCCCC
Confidence 45689999988766 8999999988644 2478999999999999997743 34555566689888876555
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhcHHH
Q 004942 680 AQVLAQNLRYLLKNPSVRERMAMEGRKKSNGLAERH 715 (722)
Q Consensus 680 ~e~LA~aI~~LL~np~~r~~mg~~grk~ve~~~~~~ 715 (722)
++.++++|.++++|++.++++.+.+.+.......+.
T Consensus 376 ~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 411 (424)
T 2iya_A 376 AEKLREAVLAVASDPGVAERLAAVRQEIREAGGARA 411 (424)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCcHHH
Confidence 699999999999999998888877766554333333
No 45
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=99.03 E-value=9.6e-08 Score=102.04 Aligned_cols=98 Identities=13% Similarity=0.053 Sum_probs=77.2
Q ss_pred CCCCcEEeCCchhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCC----hhhhhccCccEEEECCCCc
Q 004942 603 NLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGG----TKEIVEHNVTGLLHPPGHP 678 (722)
Q Consensus 603 ~L~~~V~f~G~~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG----~~EIVe~g~tGlLvp~~d~ 678 (722)
+++++|.+.++... .++|..||++|..+ -.++++|||++|+|+|+....+ ..+.+++...|+..+..+.
T Consensus 282 ~~~~~v~~~~~~~~-~~~l~~~d~~v~~~------G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~ 354 (415)
T 1iir_A 282 DDGADCFAIGEVNH-QVLFGRVAAVIHHG------GAGTTHVAARAGAPQILLPQMADQPYYAGRVAELGVGVAHDGPIP 354 (415)
T ss_dssp SCGGGEEECSSCCH-HHHGGGSSEEEECC------CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECSSSSC
T ss_pred CCCCCEEEeCcCCh-HHHHhhCCEEEeCC------ChhHHHHHHHcCCCEEECCCCCccHHHHHHHHHCCCcccCCcCCC
Confidence 34568999998865 46789999999654 2378999999999999987754 4556666668998887666
Q ss_pred cHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 004942 679 GAQVLAQNLRYLLKNPSVRERMAMEGRKKS 708 (722)
Q Consensus 679 ~~e~LA~aI~~LL~np~~r~~mg~~grk~v 708 (722)
+.+.++++|.++ +|++.++++.+.+++..
T Consensus 355 ~~~~l~~~i~~l-~~~~~~~~~~~~~~~~~ 383 (415)
T 1iir_A 355 TFDSLSAALATA-LTPETHARATAVAGTIR 383 (415)
T ss_dssp CHHHHHHHHHHH-TSHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHH-cCHHHHHHHHHHHHHHh
Confidence 669999999999 99998888877665543
No 46
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=98.94 E-value=3.3e-09 Score=99.69 Aligned_cols=92 Identities=13% Similarity=0.148 Sum_probs=73.5
Q ss_pred CCCcEEeCCchhhHHHHH--HHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCC----ChhhhhccCccEEEECCCC
Q 004942 604 LSKAMLWTPATTRVASLY--SAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAG----GTKEIVEHNVTGLLHPPGH 677 (722)
Q Consensus 604 L~~~V~f~G~~~dv~~ly--saADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~G----G~~EIVe~g~tGlLvp~~d 677 (722)
++++|.+.|+.++ ..++ ..||++|... -+++++|||++|+|+|+.... +..+.+++...|++++..+
T Consensus 66 ~~~~v~~~~~~~~-~~~l~~~~ad~~I~~~------G~~t~~Ea~~~G~P~i~~p~~~~Q~~na~~l~~~g~g~~~~~~~ 138 (170)
T 2o6l_A 66 LGLNTRLYKWIPQ-NDLLGHPKTRAFITHG------GANGIYEAIYHGIPMVGIPLFADQPDNIAHMKARGAAVRVDFNT 138 (170)
T ss_dssp CCTTEEEESSCCH-HHHHTSTTEEEEEECC------CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTTSEEECCTTT
T ss_pred CCCcEEEecCCCH-HHHhcCCCcCEEEEcC------CccHHHHHHHcCCCEEeccchhhHHHHHHHHHHcCCeEEecccc
Confidence 4568999998755 5667 8999999643 358999999999999999874 3466777778999998876
Q ss_pred ccHHHHHHHHHHhhcCHHHHHHHHH
Q 004942 678 PGAQVLAQNLRYLLKNPSVRERMAM 702 (722)
Q Consensus 678 ~~~e~LA~aI~~LL~np~~r~~mg~ 702 (722)
.+++.|+++|..+++|++.++++.+
T Consensus 139 ~~~~~l~~~i~~ll~~~~~~~~a~~ 163 (170)
T 2o6l_A 139 MSSTDLLNALKRVINDPSYKENVMK 163 (170)
T ss_dssp CCHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCHHHHHHHHH
Confidence 5669999999999999986555543
No 47
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=98.93 E-value=1.2e-07 Score=101.44 Aligned_cols=95 Identities=18% Similarity=0.162 Sum_probs=73.5
Q ss_pred CCCcEEeCCchhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCCh----hhhhccCccEEEECCCCcc
Q 004942 604 LSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGT----KEIVEHNVTGLLHPPGHPG 679 (722)
Q Consensus 604 L~~~V~f~G~~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~----~EIVe~g~tGlLvp~~d~~ 679 (722)
++.+|.+.++.. ...++..||++|..+ -..++.|||++|+|+|+...++- .+.++....|...+..+.+
T Consensus 266 ~~~~v~~~~~~~-~~~ll~~~d~~v~~g------G~~t~~Eal~~GvP~v~~p~~~dQ~~na~~~~~~G~g~~l~~~~~~ 338 (404)
T 3h4t_A 266 EGDDCLVVGEVN-HQVLFGRVAAVVHHG------GAGTTTAVTRAGAPQVVVPQKADQPYYAGRVADLGVGVAHDGPTPT 338 (404)
T ss_dssp CCTTEEEESSCC-HHHHGGGSSEEEECC------CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECSSSSCC
T ss_pred CCCCEEEecCCC-HHHHHhhCcEEEECC------cHHHHHHHHHcCCCEEEcCCcccHHHHHHHHHHCCCEeccCcCCCC
Confidence 356888888874 478999999999655 23689999999999999866543 2335555678888877666
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 004942 680 AQVLAQNLRYLLKNPSVRERMAMEGRK 706 (722)
Q Consensus 680 ~e~LA~aI~~LL~np~~r~~mg~~grk 706 (722)
++.|+++|..+++ |+.+++|.+.+.+
T Consensus 339 ~~~l~~ai~~ll~-~~~~~~~~~~~~~ 364 (404)
T 3h4t_A 339 VESLSAALATALT-PGIRARAAAVAGT 364 (404)
T ss_dssp HHHHHHHHHHHTS-HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC-HHHHHHHHHHHHH
Confidence 7999999999999 8888877665543
No 48
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=98.79 E-value=7.2e-07 Score=95.12 Aligned_cols=96 Identities=16% Similarity=0.116 Sum_probs=74.9
Q ss_pred CCCCcEEeCCchhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCC----hhhhhccCccEEEECCCCc
Q 004942 603 NLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGG----TKEIVEHNVTGLLHPPGHP 678 (722)
Q Consensus 603 ~L~~~V~f~G~~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG----~~EIVe~g~tGlLvp~~d~ 678 (722)
.++++|.+.++.. ..++|..||++|..+ -.+++.|||++|+|+|+....+ ..+.+++...|+..+..+.
T Consensus 283 ~~~~~v~~~~~~~-~~~ll~~~d~~v~~~------G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~ 355 (416)
T 1rrv_A 283 DDRDDCFAIDEVN-FQALFRRVAAVIHHG------SAGTEHVATRAGVPQLVIPRNTDQPYFAGRVAALGIGVAHDGPTP 355 (416)
T ss_dssp CCCTTEEEESSCC-HHHHGGGSSEEEECC------CHHHHHHHHHHTCCEEECCCSBTHHHHHHHHHHHTSEEECSSSCC
T ss_pred CCCCCEEEeccCC-hHHHhccCCEEEecC------ChhHHHHHHHcCCCEEEccCCCCcHHHHHHHHHCCCccCCCCCCC
Confidence 3456788888874 678899999999644 3469999999999999976643 4445666668888887666
Q ss_pred cHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 004942 679 GAQVLAQNLRYLLKNPSVRERMAMEGRK 706 (722)
Q Consensus 679 ~~e~LA~aI~~LL~np~~r~~mg~~grk 706 (722)
+.+.++++|.++ +|++.+++|.+.+++
T Consensus 356 ~~~~l~~~i~~l-~~~~~~~~~~~~~~~ 382 (416)
T 1rrv_A 356 TFESLSAALTTV-LAPETRARAEAVAGM 382 (416)
T ss_dssp CHHHHHHHHHHH-TSHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHh-hCHHHHHHHHHHHHH
Confidence 669999999999 999988888765443
No 49
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=98.67 E-value=8.6e-08 Score=110.04 Aligned_cols=99 Identities=10% Similarity=0.053 Sum_probs=79.6
Q ss_pred CCCCcEEeCCch--hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhc------cCccEE-EE
Q 004942 603 NLSKAMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVE------HNVTGL-LH 673 (722)
Q Consensus 603 ~L~~~V~f~G~~--~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe------~g~tGl-Lv 673 (722)
|++++|.|+|.+ .+....|..+|+++-|+. .+.|++++|||+||+|||+...++...-+. -|..++ +.
T Consensus 496 GI~~Rv~F~g~~p~~e~la~y~~aDIfLDpfp---y~GgtTtlEALwmGVPVVTl~G~~~asRvgaSlL~~~GLpE~LIA 572 (631)
T 3q3e_A 496 YLGDSATAHPHSPYHQYLRILHNCDMMVNPFP---FGNTNGIIDMVTLGLVGVCKTGAEVHEHIDEGLFKRLGLPEWLIA 572 (631)
T ss_dssp HHGGGEEEECCCCHHHHHHHHHTCSEEECCSS---SCCSHHHHHHHHTTCCEEEECCSSHHHHHHHHHHHHTTCCGGGEE
T ss_pred CCCccEEEcCCCCHHHHHHHHhcCcEEEeCCc---ccCChHHHHHHHcCCCEEeccCCcHHHHhHHHHHHhcCCCcceec
Confidence 666789999976 567799999999999984 456999999999999999987766665553 244443 33
Q ss_pred CCCCccHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 004942 674 PPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKS 708 (722)
Q Consensus 674 p~~d~~~e~LA~aI~~LL~np~~r~~mg~~grk~v 708 (722)
+ +. ++.++....|..|++.+++|+++.++..
T Consensus 573 ~--d~--eeYv~~Av~La~D~~~l~~LR~~Lr~~~ 603 (631)
T 3q3e_A 573 N--TV--DEYVERAVRLAENHQERLELRRYIIENN 603 (631)
T ss_dssp S--SH--HHHHHHHHHHHHCHHHHHHHHHHHHHSC
T ss_pred C--CH--HHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 3 33 8899999999999999999999988764
No 50
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae}
Probab=98.63 E-value=3e-06 Score=99.42 Aligned_cols=153 Identities=18% Similarity=0.241 Sum_probs=112.9
Q ss_pred HHHHhCCCC--CCEEEEEEecCCCCCCHHH-HHHHHHHhHH--hCCCCcchhhhhccccccccCcccccccccccccccc
Q 004942 433 VRKEMGLTD--QDMLVLSLSSINPGKGQLL-LVESAQLMIE--QEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQM 507 (722)
Q Consensus 433 ~R~elgl~~--~~~lIl~vGri~~~Kg~~~-LleA~~~L~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~ 507 (722)
+++++|+.- +.++++++.|+...|++++ ++..+..+.+ +.|..+
T Consensus 504 l~~~~Gl~vdpd~l~~~~vkRlheYKRq~Lnil~ii~~~~~i~~~~~~~------------------------------- 552 (796)
T 2c4m_A 504 ILERQGIEIDPESIFDVQIKRLHEYKRQLMNALYVLDLYFRIKEDGLTD------------------------------- 552 (796)
T ss_dssp HHHHHCCCCCTTSEEEEEECCCCGGGTHHHHHHHHHHHHHHHHTSCCCS-------------------------------
T ss_pred HHHHhCCCCCCCCcEEEEeecchhhcccCEeHHHHHHHHHHHhhCCCCC-------------------------------
Confidence 588888754 5689999999999999999 8998887764 333310
Q ss_pred cccccCccccccccchhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEEcCCch-hHHHHHHhhhccCCCCC
Q 004942 508 SDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGK-QQQALKILIGSVGSKSN 586 (722)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~-~~~~Lk~lI~~~Gs~sn 586 (722)
-..+++++.|.|. .-..-|.+|.-+
T Consensus 553 -------------------------------------------------~~p~q~If~GKA~P~y~~aK~iIk~i----- 578 (796)
T 2c4m_A 553 -------------------------------------------------IPARTVIFGAKAAPGYVRAKAIIKLI----- 578 (796)
T ss_dssp -------------------------------------------------SCCEEEEEECCCCTTCHHHHHHHHHH-----
T ss_pred -------------------------------------------------CCCeEEEEEecCCHhHHHHHHHHHHH-----
Confidence 0226889999986 334444444211
Q ss_pred CchhHHHHHHHHHhcCCCCC--cEEeCC-ch-hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhh
Q 004942 587 KVPYVKEILEFLSQHSNLSK--AMLWTP-AT-TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKE 662 (722)
Q Consensus 587 ~~~Y~~el~~~l~~~~~L~~--~V~f~G-~~-~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~E 662 (722)
.++.+.+.+.+..++ +|.|+. +- +-...++++||++..+|+.-.|++|+.-+=||..|++.|++--|...|
T Consensus 579 -----~~va~~in~dp~~~~~lKVvFl~nY~vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~iGtLDGanvE 653 (796)
T 2c4m_A 579 -----NSIADLVNNDPEVSPLLKVVFVENYNVSPAEHILPASDVSEQISTAGKEASGTSNMKFMMNGALTLGTMDGANVE 653 (796)
T ss_dssp -----HHHHHHHHTCTTTTTTEEEEEETTCCHHHHHHHGGGCSEEEECCCTTSCSCCHHHHHHHHTTCEEEEESSTHHHH
T ss_pred -----HHHHHHhccccccCCceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCCeEEeccCCeEee
Confidence 233333445666777 788776 33 456688899999999997448999999999999999999999899999
Q ss_pred hhcc--CccEEEECC
Q 004942 663 IVEH--NVTGLLHPP 675 (722)
Q Consensus 663 IVe~--g~tGlLvp~ 675 (722)
+.++ ..+|+++-.
T Consensus 654 i~e~vG~~NgF~FG~ 668 (796)
T 2c4m_A 654 IVDSVGEENAYIFGA 668 (796)
T ss_dssp HHHHHCGGGSEEESC
T ss_pred hhhhcCCCcEEEecC
Confidence 8765 369999865
No 51
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...
Probab=98.54 E-value=5e-06 Score=97.87 Aligned_cols=154 Identities=18% Similarity=0.200 Sum_probs=110.4
Q ss_pred HHHHhCCCC--CCEEEEEEecCCCCCCHHHH-HHHHHHhHH--hCCCCcchhhhhccccccccCcccccccccccccccc
Q 004942 433 VRKEMGLTD--QDMLVLSLSSINPGKGQLLL-VESAQLMIE--QEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQM 507 (722)
Q Consensus 433 ~R~elgl~~--~~~lIl~vGri~~~Kg~~~L-leA~~~L~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~ 507 (722)
+.+++|+.- +.++++++.|+...|+++++ +..+..+.+ +.|.. ..
T Consensus 538 l~~~~Gl~vdpd~l~~g~vkRl~eYKRq~L~~l~~i~~~~~i~~~~~~---------------------------~~--- 587 (824)
T 2gj4_A 538 LEREYKVHINPNSLFDVQVKRIHEYKRQLLNCLHVITLYNRIKKEPNK---------------------------FV--- 587 (824)
T ss_dssp HHHHHCCCCCTTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHHCTTS---------------------------CC---
T ss_pred HHHHhCCCcCCCcceEeeeecchhhcchhhHHHHHHHHHHHHHhCCCC---------------------------CC---
Confidence 677788753 56899999999999999998 888877742 33331 00
Q ss_pred cccccCccccccccchhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEEcCCch-hHHHHHHhhhccCCCCC
Q 004942 508 SDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGK-QQQALKILIGSVGSKSN 586 (722)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~-~~~~Lk~lI~~~Gs~sn 586 (722)
..+++++.|.|. .-..-|.+|.-+
T Consensus 588 --------------------------------------------------~p~q~If~GKA~P~y~~aK~iIkli----- 612 (824)
T 2gj4_A 588 --------------------------------------------------VPRTVMIGGKAAPGYHMAKMIIKLI----- 612 (824)
T ss_dssp --------------------------------------------------CCEEEEEECCCCTTCHHHHHHHHHH-----
T ss_pred --------------------------------------------------CCEEEEEEEeCCHhHHHHHHHHHHH-----
Confidence 126788999986 334444444211
Q ss_pred CchhHHHHHHHHHhcCCCCC--cEEeCC-ch-hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhh
Q 004942 587 KVPYVKEILEFLSQHSNLSK--AMLWTP-AT-TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKE 662 (722)
Q Consensus 587 ~~~Y~~el~~~l~~~~~L~~--~V~f~G-~~-~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~E 662 (722)
.++.+.+.+.+.+++ +|.|+. +- +-...++++||+++.+|+.-.|++|+.=+=||..|++.|+|-=|...|
T Consensus 613 -----~~va~~in~Dp~v~~~lKVvFl~nYdvslA~~I~~gaDv~l~~S~ag~EAsGTs~MKamlNGaLtigtlDGanvE 687 (824)
T 2gj4_A 613 -----TAIGDVVNHDPVVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVE 687 (824)
T ss_dssp -----HHHHHHHTTCTTTGGGEEEEEETTCCHHHHHHHGGGCSEEEECCCTTSCSCCSHHHHHHHTTCEEEECSCTTHHH
T ss_pred -----HHHHHHhccCcccCCceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCceEEEEecCccch
Confidence 222333334555667 777775 33 456688899999999997448999999999999999999998888888
Q ss_pred hhc--cCccEEEECCC
Q 004942 663 IVE--HNVTGLLHPPG 676 (722)
Q Consensus 663 IVe--~g~tGlLvp~~ 676 (722)
+.+ ...+|+++...
T Consensus 688 i~e~vG~~Ngf~FG~~ 703 (824)
T 2gj4_A 688 MAEEAGEENFFIFGMR 703 (824)
T ss_dssp HHHHHCGGGSEECSCC
T ss_pred hhhccCCCCEEEeCCc
Confidence 875 35689999764
No 52
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*
Probab=98.43 E-value=6.7e-06 Score=96.49 Aligned_cols=153 Identities=19% Similarity=0.234 Sum_probs=112.8
Q ss_pred HHHHhCCCC--CCEEEEEEecCCCCCCHHH-HHHHHHHhHH--hCCCCcchhhhhccccccccCcccccccccccccccc
Q 004942 433 VRKEMGLTD--QDMLVLSLSSINPGKGQLL-LVESAQLMIE--QEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQM 507 (722)
Q Consensus 433 ~R~elgl~~--~~~lIl~vGri~~~Kg~~~-LleA~~~L~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~l~~ 507 (722)
+++++|+.- +.++++++.|+...|++++ ++..+..+.+ ..|..
T Consensus 514 l~~~~Gl~vdpd~l~~~~vkRl~eYKRq~Lnil~ii~~~~~i~~~~~~-------------------------------- 561 (796)
T 1l5w_A 514 VKVRTGIEINPQAIFDIQIKRLHEYKRQHLNLLHILALYKEIRENPQA-------------------------------- 561 (796)
T ss_dssp HHHHHCCCCCTTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHTCTTC--------------------------------
T ss_pred HHHHhCCCcCCCcceEeeeecchhhcccCEeHHHHHHHHHHHhcCCCC--------------------------------
Confidence 688889754 5689999999999999999 8888887754 12220
Q ss_pred cccccCccccccccchhhhccCCcccccCCCCCcccccCCCCccccCCcccceeEEEcCCch-hHHHHHHhhhccCCCCC
Q 004942 508 SDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGK-QQQALKILIGSVGSKSN 586 (722)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lli~G~G~-~~~~Lk~lI~~~Gs~sn 586 (722)
.-..+++++.|.|. .-..-|.+|.-+
T Consensus 562 ------------------------------------------------~~~p~q~If~GKA~P~y~~aK~iIk~i----- 588 (796)
T 1l5w_A 562 ------------------------------------------------DRVPRVFLFGAKAAPGYYLAKNIIFAI----- 588 (796)
T ss_dssp ------------------------------------------------CCCCEEEEEECCCCTTCHHHHHHHHHH-----
T ss_pred ------------------------------------------------CCCCeEEEEEecCChhHHHHHHHHHHH-----
Confidence 00226889999986 334444444211
Q ss_pred CchhHHHHHHHHHhcCCCCC--cEEeCC-c-hhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhh
Q 004942 587 KVPYVKEILEFLSQHSNLSK--AMLWTP-A-TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKE 662 (722)
Q Consensus 587 ~~~Y~~el~~~l~~~~~L~~--~V~f~G-~-~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~E 662 (722)
.++.+.+.+.+..++ +|.|+. + .+-...+|++||++..+|+.-.|++|+.-+=||..|++.|++--|...|
T Consensus 589 -----~~va~~in~Dp~~~~~lKVvfl~nY~vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~iGtLDGanvE 663 (796)
T 1l5w_A 589 -----NKVADVINNDPLVGDKLKVVFLPDYCVSAAEKLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVE 663 (796)
T ss_dssp -----HHHHHHHHTCTTTGGGEEEEECSSCCHHHHHHHGGGCSEEEECCCTTTCCCCSHHHHHHHTTCEEEECSCTTHHH
T ss_pred -----HHHHHHhccccccCCceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCCeeecCcCCeeee
Confidence 233333445666777 788886 3 3456688899999999997448999999999999999999999999999
Q ss_pred hhcc--CccEEEECC
Q 004942 663 IVEH--NVTGLLHPP 675 (722)
Q Consensus 663 IVe~--g~tGlLvp~ 675 (722)
+.++ ..+|+++-.
T Consensus 664 i~e~vG~~NgF~FG~ 678 (796)
T 1l5w_A 664 IAEKVGEENIFIFGH 678 (796)
T ss_dssp HHHHHCGGGSEECSC
T ss_pred hhhccCCCcEEEecC
Confidence 8765 369999865
No 53
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=96.83 E-value=0.014 Score=68.07 Aligned_cols=99 Identities=11% Similarity=0.061 Sum_probs=67.7
Q ss_pred CC-CCcEEeCCch--hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhh-----hhcc-CccEEEE
Q 004942 603 NL-SKAMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKE-----IVEH-NVTGLLH 673 (722)
Q Consensus 603 ~L-~~~V~f~G~~--~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~E-----IVe~-g~tGlLv 673 (722)
|+ +++|.|.+.. .+.-..|..+|+++=|. .=+-+.+++||+.+|+|||+-......- ++.. |..-++.
T Consensus 576 gi~~~r~~f~~~~~~~~~l~~~~~~Di~LDt~---p~~g~tT~~eal~~GvPvvt~~g~~~~sR~~~s~l~~~gl~e~ia 652 (723)
T 4gyw_A 576 GLPQNRIIFSPVAPKEEHVRRGQLADVCLDTP---LCNGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGCLELIA 652 (723)
T ss_dssp TCCGGGEEEEECCCHHHHHHHGGGCSEEECCS---SSCCSHHHHHHHHTTCCEEBCCCSSGGGTHHHHHHHHHTCGGGBC
T ss_pred CCCcCeEEECCCCCHHHHHHHhCCCeEEeCCC---CcCCHHHHHHHHHcCCCEEEccCCCccHhHHHHHHHHcCCccccc
Confidence 44 4689999865 56667889999999776 3356789999999999999854322111 1110 1111222
Q ss_pred CCCCccHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 004942 674 PPGHPGAQVLAQNLRYLLKNPSVRERMAMEGRKKS 708 (722)
Q Consensus 674 p~~d~~~e~LA~aI~~LL~np~~r~~mg~~grk~v 708 (722)
.+. ++..+....|..|++.+.+++..-++..
T Consensus 653 --~~~--~~Y~~~a~~la~d~~~l~~lr~~l~~~~ 683 (723)
T 4gyw_A 653 --KNR--QEYEDIAVKLGTDLEYLKKVRGKVWKQR 683 (723)
T ss_dssp --SSH--HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred --CCH--HHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 233 7888888889999998888887766654
No 54
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=96.77 E-value=0.0089 Score=65.62 Aligned_cols=97 Identities=15% Similarity=0.105 Sum_probs=69.7
Q ss_pred CcEEeCCchhhHHHHHH--HcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCC-C---hhhhhccC-ccEEEECCCCc
Q 004942 606 KAMLWTPATTRVASLYS--AADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAG-G---TKEIVEHN-VTGLLHPPGHP 678 (722)
Q Consensus 606 ~~V~f~G~~~dv~~lys--aADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~G-G---~~EIVe~g-~tGlLvp~~d~ 678 (722)
+++...+..... .+|. ++|+||.- +-.++++||+++|+|+|+-... . ....+.+. ..|+..+.++.
T Consensus 325 ~~~~v~~w~pq~-~vL~h~~~~~fvth------~G~~S~~Eal~~GvP~i~~P~~~dQ~~Na~~l~~~~g~g~~l~~~~~ 397 (456)
T 2c1x_A 325 GYGMVVPWAPQA-EVLAHEAVGAFVTH------CGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGGVF 397 (456)
T ss_dssp TTEEEESCCCHH-HHHTSTTEEEEEEC------CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECGGGSC
T ss_pred CceEEecCCCHH-HHhcCCcCCEEEec------CCcchHHHHHHhCceEEecCChhhHHHHHHHHHHHhCeEEEecCCCc
Confidence 456666765444 6788 67888843 3456899999999999997653 2 23345555 67888876666
Q ss_pred cHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh
Q 004942 679 GAQVLAQNLRYLLKNPSVRERMAMEGRKKSNG 710 (722)
Q Consensus 679 ~~e~LA~aI~~LL~np~~r~~mg~~grk~ve~ 710 (722)
+.+.++++|+.+++|++ .++|++++++..+.
T Consensus 398 ~~~~l~~~i~~ll~~~~-~~~~r~~a~~l~~~ 428 (456)
T 2c1x_A 398 TKSGLMSCFDQILSQEK-GKKLRENLRALRET 428 (456)
T ss_dssp CHHHHHHHHHHHHHSHH-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHH
Confidence 67999999999999986 56666666665544
No 55
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=96.68 E-value=0.022 Score=59.31 Aligned_cols=43 Identities=12% Similarity=0.132 Sum_probs=38.3
Q ss_pred cEEeCCchhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcC
Q 004942 607 AMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTD 656 (722)
Q Consensus 607 ~V~f~G~~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd 656 (722)
++...+++++++++|.+||++|.+. |.++.|++++|+|.|.-.
T Consensus 209 ~v~v~~~~~~m~~~m~~aDlvI~~g-------G~T~~E~~~~g~P~i~ip 251 (282)
T 3hbm_A 209 NIRLFIDHENIAKLMNESNKLIISA-------SSLVNEALLLKANFKAIC 251 (282)
T ss_dssp SEEEEESCSCHHHHHHTEEEEEEES-------SHHHHHHHHTTCCEEEEC
T ss_pred CEEEEeCHHHHHHHHHHCCEEEECC-------cHHHHHHHHcCCCEEEEe
Confidence 7889999999999999999999732 479999999999998865
No 56
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form, glycosyltransferase; HET: PLP; 2.80A {Saccharomyces cerevisiae} SCOP: c.87.1.4
Probab=96.21 E-value=0.2 Score=59.47 Aligned_cols=75 Identities=16% Similarity=0.219 Sum_probs=61.5
Q ss_pred hcCCCCC--cEEeCCc--hhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhcc--CccEEEE
Q 004942 600 QHSNLSK--AMLWTPA--TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEH--NVTGLLH 673 (722)
Q Consensus 600 ~~~~L~~--~V~f~G~--~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~--g~tGlLv 673 (722)
+.+.+.+ +|.|+.. ++-...++.+||+-...|..-.|+.|..=+=+|.-|.+.|+|-=|...||.++ ..+++++
T Consensus 680 ~Dp~v~~~LKVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMKfalNGaLtlgtlDGanvEi~e~vG~eN~fiF 759 (879)
T 1ygp_A 680 NDESIEHLLKVVFVADYNVSKAEIIIPASDLSEHISTAGTEASGTSNMKFVMNGGLIIGTVDGANVEITREIGEDNVFLF 759 (879)
T ss_dssp TCGGGTTSEEEEEETTCCHHHHHHHGGGCSEEEECCCTTCCSCCHHHHHHHTTTCEEEEESCTHHHHHHHHHCGGGSEEE
T ss_pred cChhhCCceEEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCchhhHHHHcCCeeeecccchhHHHHHHcCcccEEEc
Confidence 4455666 7888873 46677889999999999885579999999999999999999998999999865 3477777
Q ss_pred C
Q 004942 674 P 674 (722)
Q Consensus 674 p 674 (722)
-
T Consensus 760 G 760 (879)
T 1ygp_A 760 G 760 (879)
T ss_dssp S
T ss_pred c
Confidence 4
No 57
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=95.95 E-value=0.13 Score=56.94 Aligned_cols=99 Identities=13% Similarity=0.076 Sum_probs=68.2
Q ss_pred CCcEEeCCchhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCC----hhhhhccC-ccEEEECCCCcc
Q 004942 605 SKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGG----TKEIVEHN-VTGLLHPPGHPG 679 (722)
Q Consensus 605 ~~~V~f~G~~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG----~~EIVe~g-~tGlLvp~~d~~ 679 (722)
++++...+.... ..+++.+++-++-++ +--++++||+++|+|+|+-...+ ....+++. ..|+..+.++.+
T Consensus 326 ~~~~~vv~w~Pq-~~vL~h~~v~~fvtH----~G~~S~~Eal~~GvP~i~~P~~~DQ~~Na~~v~~~~g~Gv~l~~~~~~ 400 (454)
T 3hbf_A 326 KTKGKIVAWAPQ-VEILKHSSVGVFLTH----SGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDNGVLT 400 (454)
T ss_dssp TTTEEEESSCCH-HHHHHSTTEEEEEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTSCSEEECGGGSCC
T ss_pred CCceEEEeeCCH-HHHHhhcCcCeEEec----CCcchHHHHHHcCCCEecCcccccHHHHHHHHHHhhCeeEEecCCCCC
Confidence 356666676644 488999995444443 23358999999999999976532 23345553 688888776677
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 004942 680 AQVLAQNLRYLLKNPSVRERMAMEGRKKSN 709 (722)
Q Consensus 680 ~e~LA~aI~~LL~np~~r~~mg~~grk~ve 709 (722)
.++++++|+.+++|++ .++|++++++..+
T Consensus 401 ~~~l~~av~~ll~~~~-~~~~r~~a~~l~~ 429 (454)
T 3hbf_A 401 KESIKKALELTMSSEK-GGIMRQKIVKLKE 429 (454)
T ss_dssp HHHHHHHHHHHHSSHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCh-HHHHHHHHHHHHH
Confidence 7999999999999852 3455555555443
No 58
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=95.67 E-value=0.11 Score=53.55 Aligned_cols=42 Identities=21% Similarity=0.237 Sum_probs=32.6
Q ss_pred cEEeCCch--hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEc
Q 004942 607 AMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGT 655 (722)
Q Consensus 607 ~V~f~G~~--~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaT 655 (722)
.+.+.|.+ .++..+++.||++|.+.. | .+..|.|+|+|+|+-
T Consensus 243 ~~~l~g~~sl~e~~ali~~a~l~I~~Ds------g-~~HlAaa~g~P~v~l 286 (348)
T 1psw_A 243 CRNLAGETQLDQAVILIAACKAIVTNDS------G-LMHVAAALNRPLVAL 286 (348)
T ss_dssp EEECTTTSCHHHHHHHHHTSSEEEEESS------H-HHHHHHHTTCCEEEE
T ss_pred eEeccCcCCHHHHHHHHHhCCEEEecCC------H-HHHHHHHcCCCEEEE
Confidence 34667754 789999999999998763 2 344499999999984
No 59
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=94.85 E-value=0.14 Score=56.36 Aligned_cols=98 Identities=11% Similarity=0.089 Sum_probs=68.4
Q ss_pred CCcEEeCCchhhHHHHHHHcCE--EEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCCh----hhhh-ccCccEEEECCCC
Q 004942 605 SKAMLWTPATTRVASLYSAADV--YVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGT----KEIV-EHNVTGLLHPPGH 677 (722)
Q Consensus 605 ~~~V~f~G~~~dv~~lysaADv--~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~----~EIV-e~g~tGlLvp~~d 677 (722)
++++...+..... .+++.+++ ||.- +-.++++||+++|+|+|+-...+- ...+ +.-..|+..+ .+
T Consensus 352 ~~~~~v~~~~pq~-~~L~h~~~~~~vth------~G~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~-~~ 423 (482)
T 2pq6_A 352 ADRGLIASWCPQD-KVLNHPSIGGFLTH------CGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEID-TN 423 (482)
T ss_dssp TTTEEEESCCCHH-HHHTSTTEEEEEEC------CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECC-SS
T ss_pred CCCEEEEeecCHH-HHhcCCCCCEEEec------CCcchHHHHHHcCCCEEecCcccchHHHHHHHHHHhCEEEEEC-CC
Confidence 3567777766554 58866665 5532 334689999999999999866322 2233 3445788776 55
Q ss_pred ccHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhh
Q 004942 678 PGAQVLAQNLRYLLKNPSVRERMAMEGRKKSNGL 711 (722)
Q Consensus 678 ~~~e~LA~aI~~LL~np~~r~~mg~~grk~ve~~ 711 (722)
.+.+.++++|+++++|++ .++|++++++..+.+
T Consensus 424 ~~~~~l~~~i~~ll~~~~-~~~~r~~a~~l~~~~ 456 (482)
T 2pq6_A 424 VKREELAKLINEVIAGDK-GKKMKQKAMELKKKA 456 (482)
T ss_dssp CCHHHHHHHHHHHHTSHH-HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHH
Confidence 667999999999999987 466777766665543
No 60
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=94.32 E-value=1 Score=49.24 Aligned_cols=87 Identities=21% Similarity=0.197 Sum_probs=59.0
Q ss_pred cEEeCCchhhHHHHHH--HcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCC-Ch---hhh-hccCccEEEEC----C
Q 004942 607 AMLWTPATTRVASLYS--AADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAG-GT---KEI-VEHNVTGLLHP----P 675 (722)
Q Consensus 607 ~V~f~G~~~dv~~lys--aADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~G-G~---~EI-Ve~g~tGlLvp----~ 675 (722)
++...+..... .+|. ++|+||.-. -.++++||+++|+|+|+-... .. ... ++.-..|+... .
T Consensus 333 ~~~v~~w~pq~-~vL~h~~~~~fvth~------G~~s~~Eal~~GvP~i~~P~~~dQ~~Na~~lv~~~g~g~~l~~~~~~ 405 (463)
T 2acv_A 333 KGMICGWAPQV-EVLAHKAIGGFVSHC------GWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRK 405 (463)
T ss_dssp SEEEESSCCHH-HHHHSTTEEEEEECC------CHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTSCCEEESCSSCCT
T ss_pred CEEEEccCCHH-HHhCCCccCeEEecC------CchhHHHHHHcCCCeeeccchhhhHHHHHHHHHHcCeEEEEecccCC
Confidence 45555555444 5676 678888433 347899999999999997653 22 234 45556788772 3
Q ss_pred C--CccHHHHHHHHHHhhc-CHHHHHHH
Q 004942 676 G--HPGAQVLAQNLRYLLK-NPSVRERM 700 (722)
Q Consensus 676 ~--d~~~e~LA~aI~~LL~-np~~r~~m 700 (722)
+ ..+.+.++++|+.+++ +++.+++.
T Consensus 406 ~~~~~~~~~l~~ai~~ll~~~~~~r~~a 433 (463)
T 2acv_A 406 GSDVVAAEEIEKGLKDLMDKDSIVHKKV 433 (463)
T ss_dssp TCCCCCHHHHHHHHHHHTCTTCTHHHHH
T ss_pred CCccccHHHHHHHHHHHHhccHHHHHHH
Confidence 4 4566999999999997 45555443
No 61
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=90.64 E-value=0.72 Score=50.79 Aligned_cols=71 Identities=13% Similarity=0.107 Sum_probs=50.6
Q ss_pred HHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCC----hhhh-hccCccEEEECCC---CccHHHHHHHHHHh
Q 004942 619 SLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGG----TKEI-VEHNVTGLLHPPG---HPGAQVLAQNLRYL 690 (722)
Q Consensus 619 ~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG----~~EI-Ve~g~tGlLvp~~---d~~~e~LA~aI~~L 690 (722)
.+++.+++-++=+. +--++++||+++|+|+|+-...+ .... ++.-..|+..+.. ..+.+.++++|+.+
T Consensus 351 ~vL~h~~v~~fvtH----gG~~S~~Eal~~GvP~i~~P~~~DQ~~na~~l~~~~G~g~~l~~~~~~~~~~~~l~~av~~v 426 (480)
T 2vch_A 351 QVLAHPSTGGFLTH----CGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAGDDGLVRREEVARVVKGL 426 (480)
T ss_dssp HHHHSTTEEEEEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTTCCEECCCCCTTSCCCHHHHHHHHHHH
T ss_pred HHhCCCCcCeEEec----ccchhHHHHHHcCCCEEeccccccchHHHHHHHHHhCeEEEeecccCCccCHHHHHHHHHHH
Confidence 88998886433342 23358999999999999976532 2333 3555678776654 56679999999999
Q ss_pred hcC
Q 004942 691 LKN 693 (722)
Q Consensus 691 L~n 693 (722)
+++
T Consensus 427 l~~ 429 (480)
T 2vch_A 427 MEG 429 (480)
T ss_dssp HTS
T ss_pred hcC
Confidence 983
No 62
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=89.86 E-value=4.8 Score=42.29 Aligned_cols=75 Identities=13% Similarity=0.111 Sum_probs=46.1
Q ss_pred cccEEEEEeCCCCCCcHHHHHHHHHHHHHhC--CCEEEEEEEcCCCCChhHHHhCCc-EEEEcCCcc---------chh-
Q 004942 241 WSRKFILIFHELSMTGAPLSMMELATELLSC--GATVSAVVLSKRGGLMPELARRKI-KVLEDRGEP---------SFK- 307 (722)
Q Consensus 241 ~~kkillI~hels~gGaplsm~eLA~eL~s~--G~~VsvV~ls~~g~l~~el~~~gI-~Vl~~~~~~---------~~~- 307 (722)
..+||++|-. +.=|--+...-+..+|.+. ++++++++.....++.... -.| +|+..+... ++.
T Consensus 7 ~~~~iLvi~~--~~lGD~i~~~P~l~~L~~~~P~a~I~~l~~~~~~~l~~~~--p~vd~vi~~~~~~~~~~~~~~~~l~~ 82 (349)
T 3tov_A 7 DYKRIVVTFL--MHLGDVILTTPFLEVLRKAAPHSHITYVIDEKLQQVMEYN--PNIDELIVVDKKGRHNSISGLNEVAR 82 (349)
T ss_dssp TTCEEEEECC--CCHHHHHTTHHHHHHHHHHCTTSEEEEEEEGGGGGGTSSC--TTCSEEEEECCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEec--CcccHHHHHHHHHHHHHHHCCCCEEEEEECcchhHHHhcC--CCccEEEEeCcccccccHHHHHHHHH
Confidence 4478887754 3447777777888888886 8999999955433332211 234 355544321 111
Q ss_pred --hhcCc-cEEEECC
Q 004942 308 --TSMKA-DLVIAGS 319 (722)
Q Consensus 308 --~~~k~-DlVia~S 319 (722)
++.++ |++|.-.
T Consensus 83 ~Lr~~~y~D~vidl~ 97 (349)
T 3tov_A 83 EINAKGKTDIVINLH 97 (349)
T ss_dssp HHHHHCCCCEEEECC
T ss_pred HHhhCCCCeEEEECC
Confidence 25689 9998754
No 63
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A
Probab=88.42 E-value=0.22 Score=50.32 Aligned_cols=72 Identities=10% Similarity=0.076 Sum_probs=51.2
Q ss_pred cEEeCCchhhHHHHHH-HcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCC----C-----hhhhhccCccEEEECCC
Q 004942 607 AMLWTPATTRVASLYS-AADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAG----G-----TKEIVEHNVTGLLHPPG 676 (722)
Q Consensus 607 ~V~f~G~~~dv~~lys-aADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~G----G-----~~EIVe~g~tGlLvp~~ 676 (722)
++...++.+++..+|. .||++|.-. -..+++|++++|+|.|.-... . ...+.+.| .+++.
T Consensus 115 ~v~v~~f~~~m~~~l~~~AdlvIsha------GagTv~Eal~~G~P~IvVP~~~~~~~HQ~~nA~~l~~~G-~~~~~--- 184 (224)
T 2jzc_A 115 KVIGFDFSTKMQSIIRDYSDLVISHA------GTGSILDSLRLNKPLIVCVNDSLMDNHQQQIADKFVELG-YVWSC--- 184 (224)
T ss_dssp EEEECCSSSSHHHHHHHHCSCEEESS------CHHHHHHHHHTTCCCCEECCSSCCCCHHHHHHHHHHHHS-CCCEE---
T ss_pred eEEEeeccchHHHHHHhcCCEEEECC------cHHHHHHHHHhCCCEEEEcCcccccchHHHHHHHHHHCC-CEEEc---
Confidence 4667788899999999 999999543 456899999999999886543 2 22233444 45555
Q ss_pred CccHHHHHHHHHHh
Q 004942 677 HPGAQVLAQNLRYL 690 (722)
Q Consensus 677 d~~~e~LA~aI~~L 690 (722)
++ +.|+++|..+
T Consensus 185 ~~--~~L~~~i~~l 196 (224)
T 2jzc_A 185 AP--TETGLIAGLR 196 (224)
T ss_dssp CS--CTTTHHHHHH
T ss_pred CH--HHHHHHHHHH
Confidence 33 5577777776
No 64
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=87.72 E-value=4.5 Score=41.24 Aligned_cols=79 Identities=13% Similarity=0.101 Sum_probs=49.3
Q ss_pred EEeCCch--hhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhcc-CccEEEE-----CCCCcc
Q 004942 608 MLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEH-NVTGLLH-----PPGHPG 679 (722)
Q Consensus 608 V~f~G~~--~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~-g~tGlLv-----p~~d~~ 679 (722)
+.+.|.+ .++..+++.||++|.+-. |..-+ |.|+|+|+|+--....+..... +.....+ ...+.+
T Consensus 236 ~~l~g~~sl~el~ali~~a~l~I~~DS------G~~Hl-Aaa~g~P~v~lfg~t~p~~~~P~~~~~~~~~~~~~cm~~I~ 308 (326)
T 2gt1_A 236 VEVLPKMSLEGVARVLAGAKFVVSVDT------GLSHL-TAALDRPNITVYGPTDPGLIGGYGKNQMVCRAPGNELSQLT 308 (326)
T ss_dssp EEECCCCCHHHHHHHHHTCSEEEEESS------HHHHH-HHHTTCCEEEEESSSCHHHHCCCSSSEEEEECGGGCGGGCC
T ss_pred ccccCCCCHHHHHHHHHhCCEEEecCC------cHHHH-HHHcCCCEEEEECCCChhhcCCCCCCceEecCCcccccCCC
Confidence 4566643 789999999999997742 33444 8889999998532222332221 1111111 123556
Q ss_pred HHHHHHHHHHhhcC
Q 004942 680 AQVLAQNLRYLLKN 693 (722)
Q Consensus 680 ~e~LA~aI~~LL~n 693 (722)
+++..+++..++++
T Consensus 309 ~~~V~~~i~~~l~~ 322 (326)
T 2gt1_A 309 ANAVKQFIEENAEK 322 (326)
T ss_dssp HHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHH
Confidence 68888999888864
No 65
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A
Probab=81.34 E-value=3.2 Score=44.10 Aligned_cols=73 Identities=21% Similarity=0.151 Sum_probs=47.1
Q ss_pred hccccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCC-----CCChhHHHhCCcEEEEcCCcc---------
Q 004942 239 FVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKR-----GGLMPELARRKIKVLEDRGEP--------- 304 (722)
Q Consensus 239 ~~~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~-----g~l~~el~~~gI~Vl~~~~~~--------- 304 (722)
+|++.||+++ |.+-....+.++|.+.|++|.+|....+ ........+.||+++......
T Consensus 19 ~~~~mrIvf~-------G~~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~ 91 (329)
T 2bw0_A 19 YFQSMKIAVI-------GQSLFGQEVYCHLRKEGHEVVGVFTVPDKDGKADPLGLEAEKDGVPVFKYSRWRAKGQALPDV 91 (329)
T ss_dssp --CCCEEEEE-------CCHHHHHHHHHHHHHTTCEEEEEEECCCCSSCCCHHHHHHHHHTCCEEECSCCEETTEECHHH
T ss_pred cCCCCEEEEE-------cCcHHHHHHHHHHHHCCCeEEEEEeCCCcCCCCCHHHHHHHHcCCCEEecCcccccccccHHH
Confidence 5777898887 3454455566788888999988875321 223344568899998865321
Q ss_pred -chhhhcCccEEEEC
Q 004942 305 -SFKTSMKADLVIAG 318 (722)
Q Consensus 305 -~~~~~~k~DlVia~ 318 (722)
....+.+||++++-
T Consensus 92 ~~~l~~~~~Dliv~a 106 (329)
T 2bw0_A 92 VAKYQALGAELNVLP 106 (329)
T ss_dssp HHHHHTTCCSEEEES
T ss_pred HHHHHhcCCCEEEEe
Confidence 23347899999554
No 66
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=75.28 E-value=10 Score=42.39 Aligned_cols=76 Identities=17% Similarity=0.194 Sum_probs=49.9
Q ss_pred hccccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCccchhhhcCccEEEEC
Q 004942 239 FVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPSFKTSMKADLVIAG 318 (722)
Q Consensus 239 ~~~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~~~~~~~k~DlVia~ 318 (722)
++..++|.+| ++||+.++. +|+.|.++|++|++.=..........|+..||++..-.....+ ...+|+|+..
T Consensus 16 ~~~~~~i~~i----GiGg~Gms~--lA~~l~~~G~~V~~sD~~~~~~~~~~L~~~gi~~~~G~~~~~~--~~~~d~vV~S 87 (524)
T 3hn7_A 16 YFQGMHIHIL----GICGTFMGS--LALLARALGHTVTGSDANIYPPMSTQLEQAGVTIEEGYLIAHL--QPAPDLVVVG 87 (524)
T ss_dssp ---CCEEEEE----TTTSHHHHH--HHHHHHHTTCEEEEEESCCCTTHHHHHHHTTCEEEESCCGGGG--CSCCSEEEEC
T ss_pred eecCCEEEEE----EecHhhHHH--HHHHHHhCCCEEEEECCCCCcHHHHHHHHCCCEEECCCCHHHc--CCCCCEEEEC
Confidence 4555776554 678887665 8889999999998875332233456788899998753221111 2368999998
Q ss_pred Cchh
Q 004942 319 SAVC 322 (722)
Q Consensus 319 Sav~ 322 (722)
.++.
T Consensus 88 pgi~ 91 (524)
T 3hn7_A 88 NAMK 91 (524)
T ss_dssp TTCC
T ss_pred CCcC
Confidence 7764
No 67
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=73.88 E-value=28 Score=30.12 Aligned_cols=84 Identities=8% Similarity=0.217 Sum_probs=56.2
Q ss_pred cEEeCCchhhHHHHHHH--cCEEEEcCCCCCCCccHHHHHHHHh-----CCCEEE-cCCCCh---hhhhccCccEEEECC
Q 004942 607 AMLWTPATTRVASLYSA--ADVYVINSQGLGETFGRVTIEAMAF-----GVPVLG-TDAGGT---KEIVEHNVTGLLHPP 675 (722)
Q Consensus 607 ~V~f~G~~~dv~~lysa--ADv~V~pS~~l~EgfglviLEAMA~-----GlPVVa-Td~GG~---~EIVe~g~tGlLvp~ 675 (722)
.|.......+...++.. .|++++-.. +.+.-|.-+++.+.. .+|||. |..... .+.+..|..+++..|
T Consensus 34 ~v~~~~~~~~a~~~l~~~~~dlii~d~~-l~~~~g~~~~~~l~~~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kp 112 (147)
T 2zay_A 34 DIIQCGNAIEAVPVAVKTHPHLIITEAN-MPKISGMDLFNSLKKNPQTASIPVIALSGRATAKEEAQLLDMGFIDFIAKP 112 (147)
T ss_dssp EEEEESSHHHHHHHHHHHCCSEEEEESC-CSSSCHHHHHHHHHTSTTTTTSCEEEEESSCCHHHHHHHHHHTCSEEEESS
T ss_pred eEEEeCCHHHHHHHHHcCCCCEEEEcCC-CCCCCHHHHHHHHHcCcccCCCCEEEEeCCCCHHHHHHHHhCCCCEEEeCC
Confidence 34444444444444443 599888765 355567778888764 678776 444443 234567889999998
Q ss_pred CCccHHHHHHHHHHhhcC
Q 004942 676 GHPGAQVLAQNLRYLLKN 693 (722)
Q Consensus 676 ~d~~~e~LA~aI~~LL~n 693 (722)
-+. +.|...|..+++.
T Consensus 113 ~~~--~~L~~~i~~~~~~ 128 (147)
T 2zay_A 113 VNA--IRLSARIKRVLKL 128 (147)
T ss_dssp CCH--HHHHHHHHHHHHH
T ss_pred CCH--HHHHHHHHHHHHH
Confidence 888 8999999888763
No 68
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=73.63 E-value=42 Score=28.68 Aligned_cols=114 Identities=11% Similarity=0.019 Sum_probs=71.4
Q ss_pred cceeEEEcCCchh-HHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEeCCchhhHHHHHHH-------cCEEEE
Q 004942 558 LRRKVLSKSDGKQ-QQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYSA-------ADVYVI 629 (722)
Q Consensus 558 ~~~~lli~G~G~~-~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~G~~~dv~~lysa-------ADv~V~ 629 (722)
...+++++.+-+. ...++.++... +....|.......+...++.. .|++++
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~l~~~---------------------~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~ 66 (146)
T 3ilh_A 8 KIDSVLLIDDDDIVNFLNTTIIRMT---------------------HRVEEIQSVTSGNAAINKLNELYAAGRWPSIICI 66 (146)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHTT---------------------CCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEE
T ss_pred ccceEEEEeCCHHHHHHHHHHHHhc---------------------CCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEE
Confidence 3456777766543 44555555322 222245555444555556655 699988
Q ss_pred cCCCCCCCccHHHHHHHHh-------CCCEEEc-CCCCh---hhhhccC-ccEEEECCCCccHHHHHHHHHHhhcCHH
Q 004942 630 NSQGLGETFGRVTIEAMAF-------GVPVLGT-DAGGT---KEIVEHN-VTGLLHPPGHPGAQVLAQNLRYLLKNPS 695 (722)
Q Consensus 630 pS~~l~EgfglviLEAMA~-------GlPVVaT-d~GG~---~EIVe~g-~tGlLvp~~d~~~e~LA~aI~~LL~np~ 695 (722)
-.. +.+.-|..+++.+.. .+|+|.. ..... .+.+..| ..+++..|-+. +.|.++|...+....
T Consensus 67 D~~-l~~~~g~~~~~~l~~~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~--~~L~~~i~~~~~~~~ 141 (146)
T 3ilh_A 67 DIN-MPGINGWELIDLFKQHFQPMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTA--NALNNLYNKVLNEGH 141 (146)
T ss_dssp ESS-CSSSCHHHHHHHHHHHCGGGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCH--HHHHHHHHHHHCC--
T ss_pred cCC-CCCCCHHHHHHHHHHhhhhccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCH--HHHHHHHHHHHHhcc
Confidence 775 466667778877654 6677664 33332 2344556 88899999888 999999999887554
No 69
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=72.55 E-value=8.7 Score=44.27 Aligned_cols=82 Identities=13% Similarity=0.118 Sum_probs=50.4
Q ss_pred CCcEEeCCchhhHHHHHHHcCEEEEcCCCCCCCccHHHHHHHHhCCCEEEcCCCChhhhhccCccEEEECCCC-------
Q 004942 605 SKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPVLGTDAGGTKEIVEHNVTGLLHPPGH------- 677 (722)
Q Consensus 605 ~~~V~f~G~~~dv~~lysaADv~V~pS~~l~EgfglviLEAMA~GlPVVaTd~GG~~EIVe~g~tGlLvp~~d------- 677 (722)
.+.+.-.....++.++|..||++|.= ++-++.|++..++|||-... ...+... +..|+.++..+
T Consensus 597 ~~~~~~~~~~~di~~ll~~aD~lITD-------ySSv~fD~~~l~kPiif~~~-D~~~Y~~-~~rg~y~d~~~~~pg~~~ 667 (729)
T 3l7i_A 597 ENFAIDVSNYNDVSELFLISDCLITD-------YSSVMFDYGILKRPQFFFAY-DIDKYDK-GLRGFYMNYMEDLPGPIY 667 (729)
T ss_dssp TTTEEECTTCSCHHHHHHTCSEEEES-------SCTHHHHHGGGCCCEEEECT-TTTTTTS-SCCSBSSCTTSSSSSCEE
T ss_pred CCcEEeCCCCcCHHHHHHHhCEEEee-------chHHHHhHHhhCCCEEEecC-CHHHHhh-ccCCcccChhHhCCCCeE
Confidence 44555555556899999999999953 33489999999999998622 1122211 11233332110
Q ss_pred ccHHHHHHHHHHhhcCHH
Q 004942 678 PGAQVLAQNLRYLLKNPS 695 (722)
Q Consensus 678 ~~~e~LA~aI~~LL~np~ 695 (722)
.+.++|.++|.....+++
T Consensus 668 ~~~~eL~~~i~~~~~~~~ 685 (729)
T 3l7i_A 668 TEPYGLAKELKNLDKVQQ 685 (729)
T ss_dssp SSHHHHHHHHTTHHHHHH
T ss_pred CCHHHHHHHHhhhhccch
Confidence 023788888887765433
No 70
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=70.29 E-value=19 Score=37.33 Aligned_cols=73 Identities=21% Similarity=0.229 Sum_probs=47.5
Q ss_pred cEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCccchhhhcCccEEEECCchh
Q 004942 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPSFKTSMKADLVIAGSAVC 322 (722)
Q Consensus 243 kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~~~~~~~k~DlVia~Sav~ 322 (722)
++|.+| +.||+.++. +|+.|.++|++|++.=.........+|...||++..-.....+ ....+|+|+...++.
T Consensus 5 ~~i~~i----GiGg~Gms~--~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~v~~g~~~~~l-~~~~~d~vV~Spgi~ 77 (326)
T 3eag_A 5 KHIHII----GIGGTFMGG--LAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVYEGFDAAQL-DEFKADVYVIGNVAK 77 (326)
T ss_dssp CEEEEE----SCCSHHHHH--HHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEEESCCGGGG-GSCCCSEEEECTTCC
T ss_pred cEEEEE----EECHHHHHH--HHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCEEECCCCHHHc-CCCCCCEEEECCCcC
Confidence 455444 577777553 7888999999999875332233456788899998853211111 113689999887664
No 71
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=69.19 E-value=17 Score=34.84 Aligned_cols=74 Identities=19% Similarity=0.192 Sum_probs=46.9
Q ss_pred ccccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCc-EEEEcCCccchhh-hcCccEEEE
Q 004942 240 VWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKI-KVLEDRGEPSFKT-SMKADLVIA 317 (722)
Q Consensus 240 ~~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI-~Vl~~~~~~~~~~-~~k~DlVia 317 (722)
+..++|++. ||+.-.=..++++|++.|++|.+++ +...-..++...++ .++..+....+.. -.++|+||.
T Consensus 19 l~~~~ilVt------GatG~iG~~l~~~L~~~G~~V~~~~--R~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~D~vi~ 90 (236)
T 3e8x_A 19 FQGMRVLVV------GANGKVARYLLSELKNKGHEPVAMV--RNEEQGPELRERGASDIVVANLEEDFSHAFASIDAVVF 90 (236)
T ss_dssp --CCEEEEE------TTTSHHHHHHHHHHHHTTCEEEEEE--SSGGGHHHHHHTTCSEEEECCTTSCCGGGGTTCSEEEE
T ss_pred cCCCeEEEE------CCCChHHHHHHHHHHhCCCeEEEEE--CChHHHHHHHhCCCceEEEcccHHHHHHHHcCCCEEEE
Confidence 445665533 3334445568889999999998887 44444556667788 8887655433333 237899987
Q ss_pred CCch
Q 004942 318 GSAV 321 (722)
Q Consensus 318 ~Sav 321 (722)
+...
T Consensus 91 ~ag~ 94 (236)
T 3e8x_A 91 AAGS 94 (236)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7543
No 72
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=68.96 E-value=62 Score=28.63 Aligned_cols=67 Identities=10% Similarity=0.126 Sum_probs=47.8
Q ss_pred HcCEEEEcCCCCCCCccHHHHHHHH---hCCCEEEc-CCCCh---hhhhccCccEEEECCCCccHHHHHHHHHHhhc
Q 004942 623 AADVYVINSQGLGETFGRVTIEAMA---FGVPVLGT-DAGGT---KEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLK 692 (722)
Q Consensus 623 aADv~V~pS~~l~EgfglviLEAMA---~GlPVVaT-d~GG~---~EIVe~g~tGlLvp~~d~~~e~LA~aI~~LL~ 692 (722)
..|++++-.. +.+.-|..+++.+. ..+|||.. ..... .+.+..|..+++..|-+. +.|.+.|..+++
T Consensus 83 ~~dliilD~~-l~~~~g~~~~~~lr~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~--~~l~~~i~~~l~ 156 (157)
T 3hzh_A 83 NIDIVTLXIT-MPKMDGITCLSNIMEFDKNARVIMISALGKEQLVKDCLIKGAKTFIVKPLDR--AKVLQRVMSVFV 156 (157)
T ss_dssp GCCEEEECSS-CSSSCHHHHHHHHHHHCTTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCH--HHHHHHHHHTTC
T ss_pred CCCEEEEecc-CCCccHHHHHHHHHhhCCCCcEEEEeccCcHHHHHHHHHcCCCEEEeCCCCH--HHHHHHHHHHhc
Confidence 3489998775 45556777777664 36788764 33332 345567889999999888 999999998875
No 73
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=68.01 E-value=55 Score=28.59 Aligned_cols=113 Identities=17% Similarity=0.128 Sum_probs=70.1
Q ss_pred ccceeEEEcCCch-hHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEeCCchhhHHHHHHH--cCEEEEcCCC
Q 004942 557 HLRRKVLSKSDGK-QQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYSA--ADVYVINSQG 633 (722)
Q Consensus 557 ~~~~~lli~G~G~-~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~G~~~dv~~lysa--ADv~V~pS~~ 633 (722)
....+++++.+-+ ..+.++.++...| -...|.......+....+.. .|++++-..
T Consensus 18 ~~m~~iLivdd~~~~~~~l~~~L~~~~---------------------~~~~v~~~~~~~~al~~l~~~~~dlii~D~~- 75 (150)
T 4e7p_A 18 GSHMKVLVAEDQSMLRDAMCQLLTLQP---------------------DVESVLQAKNGQEAIQLLEKESVDIAILDVE- 75 (150)
T ss_dssp --CEEEEEECSCHHHHHHHHHHHHTST---------------------TEEEEEEESSHHHHHHHHTTSCCSEEEECSS-
T ss_pred CCccEEEEEcCCHHHHHHHHHHHHhCC---------------------CcEEEEEECCHHHHHHHhhccCCCEEEEeCC-
Confidence 3446677776654 3455555553221 11234444444444455543 488888775
Q ss_pred CCCCccHHHHHHHHh---CCCEEE-cCCCC---hhhhhccCccEEEECCCCccHHHHHHHHHHhhcC
Q 004942 634 LGETFGRVTIEAMAF---GVPVLG-TDAGG---TKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKN 693 (722)
Q Consensus 634 l~EgfglviLEAMA~---GlPVVa-Td~GG---~~EIVe~g~tGlLvp~~d~~~e~LA~aI~~LL~n 693 (722)
+.+.-|..+++.+.. .+|||. |.... ..+.+..|..+++..+-+. +.|.++|..+++.
T Consensus 76 l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~--~~l~~~i~~~~~~ 140 (150)
T 4e7p_A 76 MPVKTGLEVLEWIRSEKLETKVVVVTTFKRAGYFERAVKAGVDAYVLKERSI--ADLMQTLHTVLEG 140 (150)
T ss_dssp CSSSCHHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCH--HHHHHHHHHHHTT
T ss_pred CCCCcHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHCCCcEEEecCCCH--HHHHHHHHHHHcC
Confidence 456667777777654 567765 44333 3445677899999999888 9999999998864
No 74
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=66.30 E-value=52 Score=28.33 Aligned_cols=83 Identities=8% Similarity=0.109 Sum_probs=55.8
Q ss_pred cEEeCCchhhHHHHHHH--cCEEEEcCCCCCCCccHHHHHHHHh-----CCCEEEc-CCCCh---hhhhccCccEEEECC
Q 004942 607 AMLWTPATTRVASLYSA--ADVYVINSQGLGETFGRVTIEAMAF-----GVPVLGT-DAGGT---KEIVEHNVTGLLHPP 675 (722)
Q Consensus 607 ~V~f~G~~~dv~~lysa--ADv~V~pS~~l~EgfglviLEAMA~-----GlPVVaT-d~GG~---~EIVe~g~tGlLvp~ 675 (722)
.|.......+....+.. .|++++-.. +.+.-|..+++.+.. .+|||.- ..... .+.+..|..+++..|
T Consensus 33 ~v~~~~~~~~a~~~l~~~~~dlii~D~~-l~~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp 111 (144)
T 3kht_A 33 QLEFVDNGAKALYQVQQAKYDLIILDIG-LPIANGFEVMSAVRKPGANQHTPIVILTDNVSDDRAKQCMAAGASSVVDKS 111 (144)
T ss_dssp EEEEESSHHHHHHHHTTCCCSEEEECTT-CGGGCHHHHHHHHHSSSTTTTCCEEEEETTCCHHHHHHHHHTTCSEEEECC
T ss_pred eEEEECCHHHHHHHhhcCCCCEEEEeCC-CCCCCHHHHHHHHHhcccccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECC
Confidence 35555444454455544 488888765 355567778887754 6788764 33333 234567889999998
Q ss_pred C-CccHHHHHHHHHHhhc
Q 004942 676 G-HPGAQVLAQNLRYLLK 692 (722)
Q Consensus 676 ~-d~~~e~LA~aI~~LL~ 692 (722)
- +. +.|.++|..+++
T Consensus 112 ~~~~--~~l~~~i~~~l~ 127 (144)
T 3kht_A 112 SNNV--TDFYGRIYAIFS 127 (144)
T ss_dssp TTSH--HHHHHHHHHHHH
T ss_pred CCcH--HHHHHHHHHHHH
Confidence 8 87 999999988875
No 75
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=66.12 E-value=63 Score=27.68 Aligned_cols=86 Identities=14% Similarity=0.189 Sum_probs=57.5
Q ss_pred cEEeCCchhhHHHHHH----HcCEEEEcCCCCCCCccHHHHHHHHh---CCCEEE-cCCCC---hhhhhccCccEEEECC
Q 004942 607 AMLWTPATTRVASLYS----AADVYVINSQGLGETFGRVTIEAMAF---GVPVLG-TDAGG---TKEIVEHNVTGLLHPP 675 (722)
Q Consensus 607 ~V~f~G~~~dv~~lys----aADv~V~pS~~l~EgfglviLEAMA~---GlPVVa-Td~GG---~~EIVe~g~tGlLvp~ 675 (722)
.|.......+....+. ..|++++-.. +.+.-|..+++.+.. .+|||. |.... ..+.+..|..+++..|
T Consensus 29 ~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~-l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp 107 (143)
T 3jte_A 29 EVLTASSSTEGLRIFTENCNSIDVVITDMK-MPKLSGMDILREIKKITPHMAVIILTGHGDLDNAILAMKEGAFEYLRKP 107 (143)
T ss_dssp EEEEESSHHHHHHHHHHTTTTCCEEEEESC-CSSSCHHHHHHHHHHHCTTCEEEEEECTTCHHHHHHHHHTTCSEEEESS
T ss_pred eEEEeCCHHHHHHHHHhCCCCCCEEEEeCC-CCCCcHHHHHHHHHHhCCCCeEEEEECCCCHHHHHHHHHhCcceeEeCC
Confidence 3444444445445554 4699888775 455667777766643 677766 44433 3345677889999999
Q ss_pred CCccHHHHHHHHHHhhcCHH
Q 004942 676 GHPGAQVLAQNLRYLLKNPS 695 (722)
Q Consensus 676 ~d~~~e~LA~aI~~LL~np~ 695 (722)
-+. +.|..+|..+++...
T Consensus 108 ~~~--~~l~~~l~~~~~~~~ 125 (143)
T 3jte_A 108 VTA--QDLSIAINNAINRKK 125 (143)
T ss_dssp CCH--HHHHHHHHHHHHHHH
T ss_pred CCH--HHHHHHHHHHHHHHH
Confidence 887 999999999876443
No 76
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=65.83 E-value=12 Score=39.43 Aligned_cols=72 Identities=17% Similarity=0.163 Sum_probs=46.3
Q ss_pred ccccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCC--C---------CChhHHHhCCcEEEEcCCcc----
Q 004942 240 VWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKR--G---------GLMPELARRKIKVLEDRGEP---- 304 (722)
Q Consensus 240 ~~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~--g---------~l~~el~~~gI~Vl~~~~~~---- 304 (722)
|.+.||+++ |.|-+.....++|...||+|..|+...+ . .......+.||+++......
T Consensus 5 ~~~mrivf~-------Gt~~fa~~~L~~L~~~~~~v~~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~ 77 (318)
T 3q0i_A 5 SQSLRIVFA-------GTPDFAARHLAALLSSEHEIIAVYTQPERPAGRGKKLTASPVKTLALEHNVPVYQPENFKSDES 77 (318)
T ss_dssp --CCEEEEE-------CCSHHHHHHHHHHHTSSSEEEEEECCCC---------CCCHHHHHHHHTTCCEECCSCSCSHHH
T ss_pred ccCCEEEEE-------ecCHHHHHHHHHHHHCCCcEEEEEcCCCCcccccccCCCCHHHHHHHHcCCCEEccCcCCCHHH
Confidence 345688877 5566666667788889999998875321 1 12344568999998643221
Q ss_pred -chhhhcCccEEEEC
Q 004942 305 -SFKTSMKADLVIAG 318 (722)
Q Consensus 305 -~~~~~~k~DlVia~ 318 (722)
....+.+||++++-
T Consensus 78 ~~~l~~~~~Dliv~~ 92 (318)
T 3q0i_A 78 KQQLAALNADLMVVV 92 (318)
T ss_dssp HHHHHTTCCSEEEES
T ss_pred HHHHHhcCCCEEEEe
Confidence 33448899999554
No 77
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=63.88 E-value=57 Score=28.43 Aligned_cols=86 Identities=13% Similarity=0.138 Sum_probs=57.9
Q ss_pred CCCCcEEeCCchhhHHHHHH-----------HcCEEEEcCCCCCCCccHHHHHHHHh-----CCCEEE-cCCCCh---hh
Q 004942 603 NLSKAMLWTPATTRVASLYS-----------AADVYVINSQGLGETFGRVTIEAMAF-----GVPVLG-TDAGGT---KE 662 (722)
Q Consensus 603 ~L~~~V~f~G~~~dv~~lys-----------aADv~V~pS~~l~EgfglviLEAMA~-----GlPVVa-Td~GG~---~E 662 (722)
+....|.......+...++. ..|++++-.. +.+.-|.-+++.+.. .+|||. |..... .+
T Consensus 28 g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~-l~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~ 106 (152)
T 3heb_A 28 GVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLN-LPDMTGIDILKLVKENPHTRRSPVVILTTTDDQREIQR 106 (152)
T ss_dssp TCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSB-CSSSBHHHHHHHHHHSTTTTTSCEEEEESCCCHHHHHH
T ss_pred CCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCC-CCCCcHHHHHHHHHhcccccCCCEEEEecCCCHHHHHH
Confidence 44335665555555555553 3588888765 456667888888754 678776 444332 34
Q ss_pred hhccCccEEEECCCCccHHHHHHHHHHhh
Q 004942 663 IVEHNVTGLLHPPGHPGAQVLAQNLRYLL 691 (722)
Q Consensus 663 IVe~g~tGlLvp~~d~~~e~LA~aI~~LL 691 (722)
.+..|..+++..|-++ +.|.+.|..+.
T Consensus 107 ~~~~g~~~~l~KP~~~--~~l~~~i~~~~ 133 (152)
T 3heb_A 107 CYDLGANVYITKPVNY--ENFANAIRQLG 133 (152)
T ss_dssp HHHTTCSEEEECCSSH--HHHHHHHHHHH
T ss_pred HHHCCCcEEEeCCCCH--HHHHHHHHHHH
Confidence 5567889999999888 89999988873
No 78
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=63.70 E-value=9.4 Score=40.24 Aligned_cols=71 Identities=18% Similarity=0.213 Sum_probs=45.6
Q ss_pred cccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCC--C---------ChhHHHhCCcEEEEcCCcc-----
Q 004942 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRG--G---------LMPELARRKIKVLEDRGEP----- 304 (722)
Q Consensus 241 ~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g--~---------l~~el~~~gI~Vl~~~~~~----- 304 (722)
|+.||+++ |.|-+.....++|.+.||+|..|+...+. + ......+.||+|+......
T Consensus 1 ~~mrivf~-------Gtp~fa~~~L~~L~~~~~~v~~Vvt~pd~~~grg~~l~~~~v~~~A~~~gIpv~~~~~~~~~~~~ 73 (314)
T 3tqq_A 1 MSLKIVFA-------GTPQFAVPTLRALIDSSHRVLAVYTQPDRPSGRGQKIMESPVKEIARQNEIPIIQPFSLRDEVEQ 73 (314)
T ss_dssp CCCEEEEE-------ECSGGGHHHHHHHHHSSSEEEEEECCCC----------CCHHHHHHHHTTCCEECCSCSSSHHHH
T ss_pred CCcEEEEE-------CCCHHHHHHHHHHHHCCCeEEEEEeCCCCccccCCccCCCHHHHHHHHcCCCEECcccCCCHHHH
Confidence 35677776 45555556667888899999988753221 1 2244568999998643322
Q ss_pred chhhhcCccEEEEC
Q 004942 305 SFKTSMKADLVIAG 318 (722)
Q Consensus 305 ~~~~~~k~DlVia~ 318 (722)
....+.+||++++-
T Consensus 74 ~~l~~~~~Dliv~~ 87 (314)
T 3tqq_A 74 EKLIAMNADVMVVV 87 (314)
T ss_dssp HHHHTTCCSEEEEE
T ss_pred HHHHhcCCCEEEEc
Confidence 33448899999543
No 79
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=62.26 E-value=78 Score=27.54 Aligned_cols=114 Identities=11% Similarity=0.076 Sum_probs=70.0
Q ss_pred ccceeEEEcCCch-hHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEeCCchhhHHHHHH--HcCEEEEcCCC
Q 004942 557 HLRRKVLSKSDGK-QQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYS--AADVYVINSQG 633 (722)
Q Consensus 557 ~~~~~lli~G~G~-~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~G~~~dv~~lys--aADv~V~pS~~ 633 (722)
..+.+++++.+-+ ..+.++.++...| ....|.......+....+. ..|++++-..
T Consensus 13 ~~~~~iLivdd~~~~~~~l~~~L~~~~---------------------~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~- 70 (152)
T 3eul_A 13 PEKVRVVVGDDHPLFREGVVRALSLSG---------------------SVNVVGEADDGAAALELIKAHLPDVALLDYR- 70 (152)
T ss_dssp -CCEEEEEECSSHHHHHHHHHHHHHHS---------------------SEEEEEEESSHHHHHHHHHHHCCSEEEEETT-
T ss_pred CceEEEEEEcCCHHHHHHHHHHHhhCC---------------------CeEEEEEeCCHHHHHHHHHhcCCCEEEEeCC-
Confidence 4456677776654 4455665554332 1112323333334444443 3588888765
Q ss_pred CCCCccHHHHHHHHh---CCCEEE-cCCCCh---hhhhccCccEEEECCCCccHHHHHHHHHHhhcCH
Q 004942 634 LGETFGRVTIEAMAF---GVPVLG-TDAGGT---KEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNP 694 (722)
Q Consensus 634 l~EgfglviLEAMA~---GlPVVa-Td~GG~---~EIVe~g~tGlLvp~~d~~~e~LA~aI~~LL~np 694 (722)
+.+.-|..+++.+.. .+|||. |..... .+.+..|..|++..|-+. +.|.++|..++...
T Consensus 71 l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~--~~l~~~i~~~~~~~ 136 (152)
T 3eul_A 71 MPGMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTR--TEIVKAVLDCAKGR 136 (152)
T ss_dssp CSSSCHHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTCCH--HHHHHHHHHHHHCC
T ss_pred CCCCCHHHHHHHHHhcCCCCeEEEEEccCCHHHHHHHHHcCCCEEEecCCCH--HHHHHHHHHHHcCC
Confidence 456667777777653 567766 444332 345677899999999888 99999999998743
No 80
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=59.29 E-value=8.6 Score=38.67 Aligned_cols=72 Identities=11% Similarity=0.163 Sum_probs=44.3
Q ss_pred ccccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCccchhhhcCccEEEECC
Q 004942 240 VWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPSFKTSMKADLVIAGS 319 (722)
Q Consensus 240 ~~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~~~~~~~k~DlVia~S 319 (722)
+..+++|+| ||+ -+....|+.|.+.|++|+||.......+.......++.++........ -..+|+||+.+
T Consensus 29 L~gk~VLVV------GgG-~va~~ka~~Ll~~GA~VtVvap~~~~~l~~l~~~~~i~~i~~~~~~~d--L~~adLVIaAT 99 (223)
T 3dfz_A 29 LKGRSVLVV------GGG-TIATRRIKGFLQEGAAITVVAPTVSAEINEWEAKGQLRVKRKKVGEED--LLNVFFIVVAT 99 (223)
T ss_dssp CTTCCEEEE------CCS-HHHHHHHHHHGGGCCCEEEECSSCCHHHHHHHHTTSCEEECSCCCGGG--SSSCSEEEECC
T ss_pred cCCCEEEEE------CCC-HHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHcCCcEEEECCCCHhH--hCCCCEEEECC
Confidence 345777776 333 456678899999999999998432222222223445777654333322 24689998775
Q ss_pred c
Q 004942 320 A 320 (722)
Q Consensus 320 a 320 (722)
.
T Consensus 100 ~ 100 (223)
T 3dfz_A 100 N 100 (223)
T ss_dssp C
T ss_pred C
Confidence 3
No 81
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=59.00 E-value=80 Score=26.48 Aligned_cols=83 Identities=11% Similarity=0.117 Sum_probs=56.8
Q ss_pred cEEeCCchhhHHHHHHH---------cCEEEEcCCCCCCCccHHHHHHHH-----hCCCEEE-cCCCCh---hhhhccCc
Q 004942 607 AMLWTPATTRVASLYSA---------ADVYVINSQGLGETFGRVTIEAMA-----FGVPVLG-TDAGGT---KEIVEHNV 668 (722)
Q Consensus 607 ~V~f~G~~~dv~~lysa---------ADv~V~pS~~l~EgfglviLEAMA-----~GlPVVa-Td~GG~---~EIVe~g~ 668 (722)
.|.......+...++.. .|++++-.. +.+.-|.-+++.+. ..+|||. |..... .+.+..|.
T Consensus 30 ~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~-~~~~~g~~~~~~l~~~~~~~~~pii~ls~~~~~~~~~~~~~~g~ 108 (140)
T 1k68_A 30 EVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLN-LPKKDGREVLAEIKSDPTLKRIPVVVLSTSINEDDIFHSYDLHV 108 (140)
T ss_dssp EEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSS-CSSSCHHHHHHHHHHSTTGGGSCEEEEESCCCHHHHHHHHHTTC
T ss_pred eEEEECCHHHHHHHHHcccccccCCCCcEEEEecC-CCcccHHHHHHHHHcCcccccccEEEEecCCcHHHHHHHHHhch
Confidence 45555555565566653 689888765 35556777777774 4678876 444332 34456788
Q ss_pred cEEEECCCCccHHHHHHHHHHhhc
Q 004942 669 TGLLHPPGHPGAQVLAQNLRYLLK 692 (722)
Q Consensus 669 tGlLvp~~d~~~e~LA~aI~~LL~ 692 (722)
.+++..|-+. +.|.+.|..+++
T Consensus 109 ~~~l~kP~~~--~~l~~~i~~~~~ 130 (140)
T 1k68_A 109 NCYITKSANL--SQLFQIVKGIEE 130 (140)
T ss_dssp SEEEECCSSH--HHHHHHHHHHHH
T ss_pred hheecCCCCH--HHHHHHHHHHHH
Confidence 9999998888 899999988764
No 82
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=58.14 E-value=87 Score=26.65 Aligned_cols=83 Identities=13% Similarity=0.115 Sum_probs=55.4
Q ss_pred EEeCCchhhHHHHHHH--cCEEEEcCCCCCCCccHHHHHHHHh-----CCCEEEcCCCC-hh----hhhccCccEEEECC
Q 004942 608 MLWTPATTRVASLYSA--ADVYVINSQGLGETFGRVTIEAMAF-----GVPVLGTDAGG-TK----EIVEHNVTGLLHPP 675 (722)
Q Consensus 608 V~f~G~~~dv~~lysa--ADv~V~pS~~l~EgfglviLEAMA~-----GlPVVaTd~GG-~~----EIVe~g~tGlLvp~ 675 (722)
|.......+....+.. .|++++-.. +.+.-|..+++.+.. .+|||.--... .. +.+..|..+++..|
T Consensus 33 v~~~~~~~~a~~~l~~~~~dlvi~d~~-l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP 111 (140)
T 3grc_A 33 SDMVHSAAQALEQVARRPYAAMTVDLN-LPDQDGVSLIRALRRDSRTRDLAIVVVSANAREGELEFNSQPLAVSTWLEKP 111 (140)
T ss_dssp EEEECSHHHHHHHHHHSCCSEEEECSC-CSSSCHHHHHHHHHTSGGGTTCEEEEECTTHHHHHHHHCCTTTCCCEEECSS
T ss_pred EEEECCHHHHHHHHHhCCCCEEEEeCC-CCCCCHHHHHHHHHhCcccCCCCEEEEecCCChHHHHHHhhhcCCCEEEeCC
Confidence 4444444444444443 388888765 456667788887764 67887753332 22 34456788999998
Q ss_pred CCccHHHHHHHHHHhhcC
Q 004942 676 GHPGAQVLAQNLRYLLKN 693 (722)
Q Consensus 676 ~d~~~e~LA~aI~~LL~n 693 (722)
-+. ++|.++|..+++.
T Consensus 112 ~~~--~~l~~~i~~~l~~ 127 (140)
T 3grc_A 112 IDE--NLLILSLHRAIDN 127 (140)
T ss_dssp CCH--HHHHHHHHHHHHH
T ss_pred CCH--HHHHHHHHHHHHh
Confidence 887 9999999988763
No 83
>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}
Probab=57.24 E-value=15 Score=36.56 Aligned_cols=73 Identities=18% Similarity=0.088 Sum_probs=44.6
Q ss_pred cEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCcc-----chhh-----hcCc
Q 004942 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP-----SFKT-----SMKA 312 (722)
Q Consensus 243 kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~-----~~~~-----~~k~ 312 (722)
.|.++|+- |+.-.=..+|+.|.+.|++|.++.-. ......++...++.++..+... .+.. .-++
T Consensus 27 ~k~vlVTG-----as~gIG~aia~~l~~~G~~V~~~~r~-~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 100 (260)
T 3gem_A 27 SAPILITG-----ASQRVGLHCALRLLEHGHRVIISYRT-EHASVTELRQAGAVALYGDFSCETGIMAFIDLLKTQTSSL 100 (260)
T ss_dssp CCCEEESS-----TTSHHHHHHHHHHHHTTCCEEEEESS-CCHHHHHHHHHTCEEEECCTTSHHHHHHHHHHHHHHCSCC
T ss_pred CCEEEEEC-----CCCHHHHHHHHHHHHCCCEEEEEeCC-hHHHHHHHHhcCCeEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence 45566643 33333456889999999999888722 2334455556677777655433 1111 1379
Q ss_pred cEEEECCch
Q 004942 313 DLVIAGSAV 321 (722)
Q Consensus 313 DlVia~Sav 321 (722)
|+++.+..+
T Consensus 101 D~lv~nAg~ 109 (260)
T 3gem_A 101 RAVVHNASE 109 (260)
T ss_dssp SEEEECCCC
T ss_pred CEEEECCCc
Confidence 999888653
No 84
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=55.98 E-value=93 Score=26.29 Aligned_cols=67 Identities=22% Similarity=0.361 Sum_probs=49.0
Q ss_pred cCEEEEcCCCCCCCccHHHHHHHHh-----CCCEEE-cCCCCh---hhhhccCccEEEECCCCccHHHHHHHHHHhhcC
Q 004942 624 ADVYVINSQGLGETFGRVTIEAMAF-----GVPVLG-TDAGGT---KEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKN 693 (722)
Q Consensus 624 ADv~V~pS~~l~EgfglviLEAMA~-----GlPVVa-Td~GG~---~EIVe~g~tGlLvp~~d~~~e~LA~aI~~LL~n 693 (722)
.|++++-.. +.+.-|..+++.+.. .+|||. |..... .+.+..|..+++..|-++ ++|.+.|..++..
T Consensus 52 ~dlvi~D~~-~p~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~--~~L~~~l~~~l~~ 127 (129)
T 3h1g_A 52 TKVLITDWN-MPEMNGLDLVKKVRSDSRFKEIPIIMITAEGGKAEVITALKAGVNNYIVKPFTP--QVLKEKLEVVLGT 127 (129)
T ss_dssp CCEEEECSC-CSSSCHHHHHHHHHTSTTCTTCCEEEEESCCSHHHHHHHHHHTCCEEEESCCCH--HHHHHHHHHHHCC
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHHhcCCCCCCeEEEEeCCCChHHHHHHHHcCccEEEeCCCCH--HHHHHHHHHHhcc
Confidence 588887665 456667888888753 578876 444433 345567889999999988 9999999988763
No 85
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=55.17 E-value=57 Score=28.14 Aligned_cols=114 Identities=18% Similarity=0.214 Sum_probs=69.0
Q ss_pred CcccceeEEEcCCchh-HHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEe-CCchhhHHHHH---HHcCEEEE
Q 004942 555 SGHLRRKVLSKSDGKQ-QQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLW-TPATTRVASLY---SAADVYVI 629 (722)
Q Consensus 555 ~~~~~~~lli~G~G~~-~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f-~G~~~dv~~ly---saADv~V~ 629 (722)
......+++++.+.+. ...++.++...| +. .|.. ....+.+..+. ...|++++
T Consensus 16 ~~~~~~~ilivdd~~~~~~~l~~~L~~~g--------------------~~--~v~~~~~~~~~~~~~~~~~~~~dlvi~ 73 (146)
T 4dad_A 16 YFQGMINILVASEDASRLAHLARLVGDAG--------------------RY--RVTRTVGRAAQIVQRTDGLDAFDILMI 73 (146)
T ss_dssp CCGGGCEEEEECSCHHHHHHHHHHHHHHC--------------------SC--EEEEECCCHHHHTTCHHHHTTCSEEEE
T ss_pred CcCCCCeEEEEeCCHHHHHHHHHHHhhCC--------------------Ce--EEEEeCCHHHHHHHHHhcCCCCCEEEE
Confidence 3445567777776553 455555554332 12 2333 22233344444 34699998
Q ss_pred cCCCCCCCccHHHHHHHHh---CCCEEE-cCCCCh---hhhhccCccEEEECCCCccHHHHHHHHHHhhcC
Q 004942 630 NSQGLGETFGRVTIEAMAF---GVPVLG-TDAGGT---KEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKN 693 (722)
Q Consensus 630 pS~~l~EgfglviLEAMA~---GlPVVa-Td~GG~---~EIVe~g~tGlLvp~~d~~~e~LA~aI~~LL~n 693 (722)
-.. +.+.-|.-+++.+.. .+|||. |..... .+.+..|..+++..|-+. +.|..+|..+++.
T Consensus 74 D~~-l~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~--~~L~~~i~~~~~~ 141 (146)
T 4dad_A 74 DGA-ALDTAELAAIEKLSRLHPGLTCLLVTTDASSQTLLDAMRAGVRDVLRWPLEP--RALDDALKRAAAQ 141 (146)
T ss_dssp ECT-TCCHHHHHHHHHHHHHCTTCEEEEEESCCCHHHHHHHHTTTEEEEEESSCCH--HHHHHHHHHHHHT
T ss_pred eCC-CCCccHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHhCCceeEcCCCCH--HHHHHHHHHHHhh
Confidence 765 345556667766643 678876 443333 345667889999998888 9999999988753
No 86
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A
Probab=54.11 E-value=21 Score=37.59 Aligned_cols=69 Identities=17% Similarity=0.199 Sum_probs=42.8
Q ss_pred ccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCC--C---------CChhHHHhCCcEEEEcCCc--c---c
Q 004942 242 SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKR--G---------GLMPELARRKIKVLEDRGE--P---S 305 (722)
Q Consensus 242 ~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~--g---------~l~~el~~~gI~Vl~~~~~--~---~ 305 (722)
+.||+++- .|-+.....++|...||+|.+|+...+ . .......+.||+++..... . .
T Consensus 3 ~mrIvf~G-------t~~fa~~~L~~L~~~~~~i~~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~ 75 (314)
T 1fmt_A 3 SLRIIFAG-------TPDFAARHLDALLSSGHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPVFQPVSLRPQENQQ 75 (314)
T ss_dssp CCEEEEEE-------CSHHHHHHHHHHHHTTCEEEEEECCCCBC------CBCCHHHHHHHHTTCCEECCSCSCSHHHHH
T ss_pred CCEEEEEe-------cCHHHHHHHHHHHHCCCcEEEEEeCCCCccccccccCcCHHHHHHHHcCCcEEecCCCCCHHHHH
Confidence 35777663 344445555677778999988875421 1 1334456899999864322 1 2
Q ss_pred hhhhcCccEEEE
Q 004942 306 FKTSMKADLVIA 317 (722)
Q Consensus 306 ~~~~~k~DlVia 317 (722)
...+.+||++++
T Consensus 76 ~l~~~~~Dliv~ 87 (314)
T 1fmt_A 76 LVAELQADVMVV 87 (314)
T ss_dssp HHHHTTCSEEEE
T ss_pred HHHhcCCCEEEE
Confidence 334789999954
No 87
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=54.05 E-value=79 Score=25.40 Aligned_cols=83 Identities=12% Similarity=0.164 Sum_probs=53.3
Q ss_pred cEEeCCchhhHHHHHHH--cCEEEEcCCCCCCCccHHHHHHHH-----hCCCEEE-cCCCChhhhhccCccEEEECCCCc
Q 004942 607 AMLWTPATTRVASLYSA--ADVYVINSQGLGETFGRVTIEAMA-----FGVPVLG-TDAGGTKEIVEHNVTGLLHPPGHP 678 (722)
Q Consensus 607 ~V~f~G~~~dv~~lysa--ADv~V~pS~~l~EgfglviLEAMA-----~GlPVVa-Td~GG~~EIVe~g~tGlLvp~~d~ 678 (722)
.|.......+....+.. .|++++-.. +.+.-|..+++.+. ..+|+|. +......+....|..+++..|-+.
T Consensus 27 ~v~~~~~~~~~~~~l~~~~~dlii~d~~-~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~g~~~~l~kp~~~ 105 (119)
T 2j48_A 27 KVIWLVDGSTALDQLDLLQPIVILMAWP-PPDQSCLLLLQHLREHQADPHPPLVLFLGEPPVDPLLTAQASAILSKPLDP 105 (119)
T ss_dssp EEEEESCHHHHHHHHHHHCCSEEEEECS-TTCCTHHHHHHHHHHTCCCSSCCCEEEESSCCSSHHHHHHCSEECSSCSTT
T ss_pred EEEEecCHHHHHHHHHhcCCCEEEEecC-CCCCCHHHHHHHHHhccccCCCCEEEEeCCCCchhhhhcCHHHhccCCCCH
Confidence 35444443444444433 488888765 34555677788775 4577765 333322266777788999888887
Q ss_pred cHHHHHHHHHHhhc
Q 004942 679 GAQVLAQNLRYLLK 692 (722)
Q Consensus 679 ~~e~LA~aI~~LL~ 692 (722)
+.|.+.|..++.
T Consensus 106 --~~l~~~l~~~~~ 117 (119)
T 2j48_A 106 --QLLLTTLQGLCP 117 (119)
T ss_dssp --HHHHHHHHTTCC
T ss_pred --HHHHHHHHHHhc
Confidence 899999887764
No 88
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=53.70 E-value=28 Score=34.68 Aligned_cols=74 Identities=14% Similarity=0.128 Sum_probs=44.7
Q ss_pred ccccEEEEEeCCCCCCcHHHHHHHHHHHHHhC--CCEEEEEEEcCCCCC-hhHHHhCCcEEEEcCCc---------c---
Q 004942 240 VWSRKFILIFHELSMTGAPLSMMELATELLSC--GATVSAVVLSKRGGL-MPELARRKIKVLEDRGE---------P--- 304 (722)
Q Consensus 240 ~~~kkillI~hels~gGaplsm~eLA~eL~s~--G~~VsvV~ls~~g~l-~~el~~~gI~Vl~~~~~---------~--- 304 (722)
|.++||+++.. |.+-.+..|..++.+. .++|.+|...++... .....+.||+++..+.. .
T Consensus 5 m~~~ri~vl~S-----G~gsnl~all~~~~~~~l~~~I~~Visn~~~a~~l~~A~~~gIp~~~~~~~~~~~r~~~d~~~~ 79 (209)
T 4ds3_A 5 MKRNRVVIFIS-----GGGSNMEALIRAAQAPGFPAEIVAVFSDKAEAGGLAKAEAAGIATQVFKRKDFASKEAHEDAIL 79 (209)
T ss_dssp -CCEEEEEEES-----SCCHHHHHHHHHHTSTTCSEEEEEEEESCTTCTHHHHHHHTTCCEEECCGGGSSSHHHHHHHHH
T ss_pred CCCccEEEEEE-----CCcHHHHHHHHHHHcCCCCcEEEEEEECCcccHHHHHHHHcCCCEEEeCccccCCHHHHHHHHH
Confidence 55667766543 3333455566666543 368888876554333 34566899999986431 1
Q ss_pred chhhhcCccEEEEC
Q 004942 305 SFKTSMKADLVIAG 318 (722)
Q Consensus 305 ~~~~~~k~DlVia~ 318 (722)
...++.+||++++-
T Consensus 80 ~~l~~~~~Dliv~a 93 (209)
T 4ds3_A 80 AALDVLKPDIICLA 93 (209)
T ss_dssp HHHHHHCCSEEEES
T ss_pred HHHHhcCCCEEEEe
Confidence 23347899999544
No 89
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=52.24 E-value=1.2e+02 Score=26.43 Aligned_cols=111 Identities=15% Similarity=0.190 Sum_probs=69.5
Q ss_pred cceeEEEcCCch-hHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEeCCchhhHHHHHHH--cCEEEEcCCCC
Q 004942 558 LRRKVLSKSDGK-QQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYSA--ADVYVINSQGL 634 (722)
Q Consensus 558 ~~~~lli~G~G~-~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~G~~~dv~~lysa--ADv~V~pS~~l 634 (722)
...+++++.+-+ ....++..+... +. .|.......+....+.. .|++++-.. +
T Consensus 13 ~~~~ILivdd~~~~~~~l~~~L~~~---------------------g~--~v~~~~~~~~a~~~l~~~~~dlvi~D~~-l 68 (153)
T 3hv2_A 13 RRPEILLVDSQEVILQRLQQLLSPL---------------------PY--TLHFARDATQALQLLASREVDLVISAAH-L 68 (153)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHTTS---------------------SC--EEEEESSHHHHHHHHHHSCCSEEEEESC-C
T ss_pred CCceEEEECCCHHHHHHHHHHhccc---------------------Cc--EEEEECCHHHHHHHHHcCCCCEEEEeCC-C
Confidence 445677766654 345555555432 22 35444444444444444 488888775 4
Q ss_pred CCCccHHHHHHHH---hCCCEEEc-CCCCh---hhhhccC-ccEEEECCCCccHHHHHHHHHHhhcCH
Q 004942 635 GETFGRVTIEAMA---FGVPVLGT-DAGGT---KEIVEHN-VTGLLHPPGHPGAQVLAQNLRYLLKNP 694 (722)
Q Consensus 635 ~EgfglviLEAMA---~GlPVVaT-d~GG~---~EIVe~g-~tGlLvp~~d~~~e~LA~aI~~LL~np 694 (722)
.+.-|..+++.+. ..+|||.- ..... .+.+..| ..+++..|-+. +.|..+|..+++..
T Consensus 69 ~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~--~~l~~~i~~~l~~~ 134 (153)
T 3hv2_A 69 PQMDGPTLLARIHQQYPSTTRILLTGDPDLKLIAKAINEGEIYRYLSKPWDD--QELLLALRQALEHQ 134 (153)
T ss_dssp SSSCHHHHHHHHHHHCTTSEEEEECCCCCHHHHHHHHHTTCCSEEECSSCCH--HHHHHHHHHHHHHH
T ss_pred CcCcHHHHHHHHHhHCCCCeEEEEECCCCHHHHHHHHhCCCcceEEeCCCCH--HHHHHHHHHHHHHh
Confidence 5666777777764 36788764 33332 2345667 78999998888 99999999987644
No 90
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=51.67 E-value=27 Score=34.54 Aligned_cols=71 Identities=11% Similarity=0.165 Sum_probs=44.7
Q ss_pred cEEEEEeCCCCCCcHHHHHHHHHHHHHhC--CCEEEEEEEcCCCC-ChhHHHhCCcEEEEcCCcc------------chh
Q 004942 243 RKFILIFHELSMTGAPLSMMELATELLSC--GATVSAVVLSKRGG-LMPELARRKIKVLEDRGEP------------SFK 307 (722)
Q Consensus 243 kkillI~hels~gGaplsm~eLA~eL~s~--G~~VsvV~ls~~g~-l~~el~~~gI~Vl~~~~~~------------~~~ 307 (722)
+|+.+++- |.+-.+..+..+|.+. +++|.+|...++.. ......+.||+++...... ...
T Consensus 4 ~ki~vl~s-----G~g~~~~~~l~~l~~~~l~~~I~~Vit~~~~~~v~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l 78 (212)
T 3av3_A 4 KRLAVFAS-----GSGTNFQAIVDAAKRGDLPARVALLVCDRPGAKVIERAARENVPAFVFSPKDYPSKAAFESEILREL 78 (212)
T ss_dssp EEEEEECC-----SSCHHHHHHHHHHHTTCCCEEEEEEEESSTTCHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHH
T ss_pred cEEEEEEE-----CCcHHHHHHHHHHHhCCCCCeEEEEEeCCCCcHHHHHHHHcCCCEEEeCcccccchhhhHHHHHHHH
Confidence 45655533 3334566777888776 68998887554332 3445678999998754321 233
Q ss_pred hhcCccEEEEC
Q 004942 308 TSMKADLVIAG 318 (722)
Q Consensus 308 ~~~k~DlVia~ 318 (722)
++.+||++++-
T Consensus 79 ~~~~~Dliv~a 89 (212)
T 3av3_A 79 KGRQIDWIALA 89 (212)
T ss_dssp HHTTCCEEEES
T ss_pred HhcCCCEEEEc
Confidence 47899999554
No 91
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=51.25 E-value=22 Score=35.02 Aligned_cols=59 Identities=14% Similarity=0.052 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCccchhhhcCccEEEECCc
Q 004942 258 PLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPSFKTSMKADLVIAGSA 320 (722)
Q Consensus 258 plsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~~~~~~~k~DlVia~Sa 320 (722)
...=..|+++|.+.|++|.+++ +...-...+...++.++..+... +. ..++|+||...+
T Consensus 14 G~iG~~l~~~L~~~g~~V~~~~--r~~~~~~~~~~~~~~~~~~D~~d-~~-~~~~d~vi~~a~ 72 (286)
T 3ius_A 14 GYTARVLSRALAPQGWRIIGTS--RNPDQMEAIRASGAEPLLWPGEE-PS-LDGVTHLLISTA 72 (286)
T ss_dssp CHHHHHHHHHHGGGTCEEEEEE--SCGGGHHHHHHTTEEEEESSSSC-CC-CTTCCEEEECCC
T ss_pred cHHHHHHHHHHHHCCCEEEEEE--cChhhhhhHhhCCCeEEEecccc-cc-cCCCCEEEECCC
Confidence 3334457889999999999887 44444455666888888755432 22 557899876644
No 92
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=51.17 E-value=1.1e+02 Score=25.89 Aligned_cols=83 Identities=13% Similarity=0.201 Sum_probs=56.2
Q ss_pred cEEeCCchhhHHHHHH------------HcCEEEEcCCCCCCCccHHHHHHHH-----hCCCEEE-cCCCCh---hhhhc
Q 004942 607 AMLWTPATTRVASLYS------------AADVYVINSQGLGETFGRVTIEAMA-----FGVPVLG-TDAGGT---KEIVE 665 (722)
Q Consensus 607 ~V~f~G~~~dv~~lys------------aADv~V~pS~~l~EgfglviLEAMA-----~GlPVVa-Td~GG~---~EIVe 665 (722)
.|.......+...++. ..|++++-.. +.+.-|.-+++.+. ..+|+|. |..... .+.+.
T Consensus 34 ~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~-l~~~~g~~~~~~l~~~~~~~~~~ii~~t~~~~~~~~~~~~~ 112 (149)
T 1k66_A 34 PIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLN-LPGTDGREVLQEIKQDEVLKKIPVVIMTTSSNPKDIEICYS 112 (149)
T ss_dssp CEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSC-CSSSCHHHHHHHHTTSTTGGGSCEEEEESCCCHHHHHHHHH
T ss_pred eEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECC-CCCCCHHHHHHHHHhCcccCCCeEEEEeCCCCHHHHHHHHH
Confidence 4555555555555554 3589888765 35556777787774 4678776 443332 33456
Q ss_pred cCccEEEECCCCccHHHHHHHHHHhhc
Q 004942 666 HNVTGLLHPPGHPGAQVLAQNLRYLLK 692 (722)
Q Consensus 666 ~g~tGlLvp~~d~~~e~LA~aI~~LL~ 692 (722)
.|..+++..|-+. +.|.+.|..+++
T Consensus 113 ~g~~~~l~kP~~~--~~l~~~i~~~~~ 137 (149)
T 1k66_A 113 YSISSYIVKPLEI--DRLTETVQTFIK 137 (149)
T ss_dssp TTCSEEEECCSSH--HHHHHHHHHHHH
T ss_pred CCCCEEEeCCCCH--HHHHHHHHHHHH
Confidence 7889999998887 899999888764
No 93
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=50.98 E-value=1.2e+02 Score=25.92 Aligned_cols=85 Identities=8% Similarity=0.068 Sum_probs=51.3
Q ss_pred cEEeCCchhhHHHHHHH--cCEEEEcCCCCCCCccHHHHHHHH-----hCCCEEE-cCC---CChhhhhccCccEEEECC
Q 004942 607 AMLWTPATTRVASLYSA--ADVYVINSQGLGETFGRVTIEAMA-----FGVPVLG-TDA---GGTKEIVEHNVTGLLHPP 675 (722)
Q Consensus 607 ~V~f~G~~~dv~~lysa--ADv~V~pS~~l~EgfglviLEAMA-----~GlPVVa-Td~---GG~~EIVe~g~tGlLvp~ 675 (722)
.|.......+....+.. .|++++-.. +.+.-|..+++.+. ..+|||. |.. ....+.+..|..+++..|
T Consensus 28 ~v~~~~~~~~a~~~~~~~~~dlvi~D~~-l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP 106 (140)
T 3n53_A 28 LVIESKNEKEALEQIDHHHPDLVILDMD-IIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKP 106 (140)
T ss_dssp EEEEESSHHHHHHHHHHHCCSEEEEETT-C------CHHHHHHTSTTCTTCCEEEEECC----CTTTTTTCCCSEEEESS
T ss_pred eEEEeCCHHHHHHHHhcCCCCEEEEeCC-CCCCcHHHHHHHHHcCcccCCCCEEEEecCCCHHHHHHHHhcCCCeeeeCC
Confidence 34444433344444433 488888765 34555666777665 5678876 333 233445667889999999
Q ss_pred CCccHHHHHHHHHHhhcCH
Q 004942 676 GHPGAQVLAQNLRYLLKNP 694 (722)
Q Consensus 676 ~d~~~e~LA~aI~~LL~np 694 (722)
-+. +.|.+.|..+++..
T Consensus 107 ~~~--~~l~~~i~~~~~~~ 123 (140)
T 3n53_A 107 FNR--NDLLSRIEIHLRTQ 123 (140)
T ss_dssp CCH--HHHHHHHHHHHHHH
T ss_pred CCH--HHHHHHHHHHHhhH
Confidence 888 99999999887643
No 94
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Probab=50.84 E-value=37 Score=38.01 Aligned_cols=78 Identities=22% Similarity=0.244 Sum_probs=52.6
Q ss_pred hhhhccccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCC-hh---H-HHh----CCcEEEEcCCcc--
Q 004942 236 FARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGL-MP---E-LAR----RKIKVLEDRGEP-- 304 (722)
Q Consensus 236 f~~~~~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l-~~---e-l~~----~gI~Vl~~~~~~-- 304 (722)
+..++..||+++. |.+..+..|++.|.++|.+|..+........ .. + +.. .+..++......
T Consensus 354 ~~~~l~Gkrv~i~-------gd~~~~~~la~~L~ElGm~vv~v~~~~~~~~~~~~~~~ll~~~~~~~~~~v~~~~d~~~l 426 (519)
T 1qgu_B 354 SHTWLHGKKFGLY-------GDPDFVMGLTRFLLELGCEPTVILSHNANKRWQKAMNKMLDASPYGRDSEVFINCDLWHF 426 (519)
T ss_dssp HHHHHTTCEEEEE-------SCHHHHHHHHHHHHHTTCEEEEEEETTCCHHHHHHHHHHHHHSTTCTTCEEEESCCHHHH
T ss_pred HHHHcCCCEEEEE-------CCchHHHHHHHHHHHCCCEEEEEEeCCCCHHHHHHHHHHHHhcCCCCCCEEEECCCHHHH
Confidence 4556788999977 2477888999999999999998875554321 11 1 223 246777643333
Q ss_pred -chhhhcCccEEEECCc
Q 004942 305 -SFKTSMKADLVIAGSA 320 (722)
Q Consensus 305 -~~~~~~k~DlVia~Sa 320 (722)
.+.++.+||++|.++.
T Consensus 427 ~~~i~~~~pDLiig~~~ 443 (519)
T 1qgu_B 427 RSLMFTRQPDFMIGNSY 443 (519)
T ss_dssp HHHHHHHCCSEEEECGG
T ss_pred HHHHhhcCCCEEEECcc
Confidence 4455778999998863
No 95
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=50.64 E-value=1.3e+02 Score=26.22 Aligned_cols=108 Identities=12% Similarity=0.177 Sum_probs=66.4
Q ss_pred eeEEEcCCchh-HHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEeCCchhhHHHHHH---------HcCEEEE
Q 004942 560 RKVLSKSDGKQ-QQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYS---------AADVYVI 629 (722)
Q Consensus 560 ~~lli~G~G~~-~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~G~~~dv~~lys---------aADv~V~ 629 (722)
.+++++.+-+. +..++..+... +....|.......+...++. ..|++++
T Consensus 9 ~~ILivdd~~~~~~~l~~~L~~~---------------------~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlill 67 (149)
T 1i3c_A 9 KVILLVEDSKADSRLVQEVLKTS---------------------TIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILL 67 (149)
T ss_dssp EEEEEECCCHHHHHHHHHHHHSC---------------------CSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEE
T ss_pred CeEEEEECCHHHHHHHHHHHHhc---------------------CCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEE
Confidence 56777766553 45555555432 22223444443344445554 3689888
Q ss_pred cCCCCCCCccHHHHHHHHh-----CCCEEE-cCCCCh---hhhhccCccEEEECCCCccHHHHHHHHHHhh
Q 004942 630 NSQGLGETFGRVTIEAMAF-----GVPVLG-TDAGGT---KEIVEHNVTGLLHPPGHPGAQVLAQNLRYLL 691 (722)
Q Consensus 630 pS~~l~EgfglviLEAMA~-----GlPVVa-Td~GG~---~EIVe~g~tGlLvp~~d~~~e~LA~aI~~LL 691 (722)
-.. +...-|.-+++.+.. .+|||. |..... .+.++.|..|++..|-+. +.|.+.|..++
T Consensus 68 D~~-lp~~~g~~l~~~l~~~~~~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~~--~~L~~~i~~~~ 135 (149)
T 1i3c_A 68 DLN-LPKKDGREVLAEIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNL--KDLFKMVQGIE 135 (149)
T ss_dssp CSC-CSSSCHHHHHHHHHHCTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSH--HHHHHHHHHHH
T ss_pred eCC-CCCCcHHHHHHHHHhCcCcCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCCH--HHHHHHHHHHH
Confidence 765 344456777777753 568765 444433 344567889999999887 89998888774
No 96
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=50.27 E-value=1.2e+02 Score=25.71 Aligned_cols=83 Identities=14% Similarity=0.138 Sum_probs=56.1
Q ss_pred EEeCCchhhHHHHHHH--cCEEEEcCCCCCCCccHHHHHHHHh-----CCCEEE-cCCCCh---hhhhccCccEEEECCC
Q 004942 608 MLWTPATTRVASLYSA--ADVYVINSQGLGETFGRVTIEAMAF-----GVPVLG-TDAGGT---KEIVEHNVTGLLHPPG 676 (722)
Q Consensus 608 V~f~G~~~dv~~lysa--ADv~V~pS~~l~EgfglviLEAMA~-----GlPVVa-Td~GG~---~EIVe~g~tGlLvp~~ 676 (722)
|.......+...++.. .|++++-.. +.+.-|.-+++.+.. .+|||. |..... .+.+..|..+++..|-
T Consensus 37 v~~~~~~~~a~~~l~~~~~dlii~d~~-l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~ 115 (143)
T 3cnb_A 37 IKIAYNPFDAGDLLHTVKPDVVMLDLM-MVGMDGFSICHRIKSTPATANIIVIAMTGALTDDNVSRIVALGAETCFGKPL 115 (143)
T ss_dssp EEEECSHHHHHHHHHHTCCSEEEEETT-CTTSCHHHHHHHHHTSTTTTTSEEEEEESSCCHHHHHHHHHTTCSEEEESSC
T ss_pred EEEECCHHHHHHHHHhcCCCEEEEecc-cCCCcHHHHHHHHHhCccccCCcEEEEeCCCCHHHHHHHHhcCCcEEEeCCC
Confidence 4444444454455544 488888765 355567777887754 567765 444433 3455678899999988
Q ss_pred CccHHHHHHHHHHhhcC
Q 004942 677 HPGAQVLAQNLRYLLKN 693 (722)
Q Consensus 677 d~~~e~LA~aI~~LL~n 693 (722)
+. ++|.+.|..+++.
T Consensus 116 ~~--~~l~~~i~~~~~~ 130 (143)
T 3cnb_A 116 NF--TLLEKTIKQLVEQ 130 (143)
T ss_dssp CH--HHHHHHHHHHHHT
T ss_pred CH--HHHHHHHHHHHHh
Confidence 87 9999999988764
No 97
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B*
Probab=50.24 E-value=46 Score=37.42 Aligned_cols=78 Identities=22% Similarity=0.238 Sum_probs=50.8
Q ss_pred hhhhccccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCC-Ch----hHHHh----CCcEEEEcCCcc--
Q 004942 236 FARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG-LM----PELAR----RKIKVLEDRGEP-- 304 (722)
Q Consensus 236 f~~~~~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~-l~----~el~~----~gI~Vl~~~~~~-- 304 (722)
+..++..+|+++. |.+..+..|++.|.++|.+|..+....... +. ..+.. .+..++...-..
T Consensus 358 ~~~~l~GKrvaI~-------gd~~~~~~la~fL~elGm~vv~v~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~D~~~l 430 (523)
T 3u7q_B 358 SHTWLHGKRFALW-------GDPDFVMGLVKFLLELGCEPVHILCHNGNKRWKKAVDAILAASPYGKNATVYIGKDLWHL 430 (523)
T ss_dssp HHHHHTTCEEEEE-------CSHHHHHHHHHHHHHTTCEEEEEEETTCCHHHHHHHHHHHHTSGGGTTCEEEESCCHHHH
T ss_pred HHHhcCCCEEEEE-------CCchHHHHHHHHHHHcCCEEEEEEeCCCCHHHHHHHHHHHhhccCCCCcEEEECCCHHHH
Confidence 4456778999876 356777889999999999999887543322 11 12222 134565533222
Q ss_pred -chhhhcCccEEEECCc
Q 004942 305 -SFKTSMKADLVIAGSA 320 (722)
Q Consensus 305 -~~~~~~k~DlVia~Sa 320 (722)
.+..+.+||++|.++-
T Consensus 431 ~~~i~~~~pDLlig~s~ 447 (523)
T 3u7q_B 431 RSLVFTDKPDFMIGNSY 447 (523)
T ss_dssp HHHHHHTCCSEEEECTT
T ss_pred HHHHHhcCCCEEEECcc
Confidence 4555789999988863
No 98
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=49.61 E-value=46 Score=33.43 Aligned_cols=71 Identities=11% Similarity=0.115 Sum_probs=44.7
Q ss_pred cEEEEEeCCCCCCcHHHHHHHHHHHHHhC--CCEEEEEEEcCCCC-ChhHHHhCCcEEEEcCCcc------------chh
Q 004942 243 RKFILIFHELSMTGAPLSMMELATELLSC--GATVSAVVLSKRGG-LMPELARRKIKVLEDRGEP------------SFK 307 (722)
Q Consensus 243 kkillI~hels~gGaplsm~eLA~eL~s~--G~~VsvV~ls~~g~-l~~el~~~gI~Vl~~~~~~------------~~~ 307 (722)
+||+++.. |.+-.+..+.++|.+. +++|.+|...++.. ......+.||+++...... ...
T Consensus 23 ~rI~~l~S-----G~g~~~~~~l~~l~~~~~~~~I~~Vvt~~~~~~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l 97 (229)
T 3auf_A 23 IRIGVLIS-----GSGTNLQAILDGCREGRIPGRVAVVISDRADAYGLERARRAGVDALHMDPAAYPSRTAFDAALAERL 97 (229)
T ss_dssp EEEEEEES-----SCCHHHHHHHHHHHTTSSSEEEEEEEESSTTCHHHHHHHHTTCEEEECCGGGSSSHHHHHHHHHHHH
T ss_pred cEEEEEEe-----CCcHHHHHHHHHHHhCCCCCeEEEEEcCCCchHHHHHHHHcCCCEEEECcccccchhhccHHHHHHH
Confidence 46766643 2334566777788766 67887777554333 2345678999998744221 233
Q ss_pred hhcCccEEEEC
Q 004942 308 TSMKADLVIAG 318 (722)
Q Consensus 308 ~~~k~DlVia~ 318 (722)
.+.+||+|++-
T Consensus 98 ~~~~~Dliv~a 108 (229)
T 3auf_A 98 QAYGVDLVCLA 108 (229)
T ss_dssp HHTTCSEEEES
T ss_pred HhcCCCEEEEc
Confidence 47899999544
No 99
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A
Probab=49.23 E-value=30 Score=36.14 Aligned_cols=62 Identities=16% Similarity=0.109 Sum_probs=40.5
Q ss_pred cHHHHHHHHHHHHHhCCCEEEEEEEcCCC--------CChhHHHhCCcEEEEcCCcc-----chhhhcCccEEEE
Q 004942 256 GAPLSMMELATELLSCGATVSAVVLSKRG--------GLMPELARRKIKVLEDRGEP-----SFKTSMKADLVIA 317 (722)
Q Consensus 256 Gaplsm~eLA~eL~s~G~~VsvV~ls~~g--------~l~~el~~~gI~Vl~~~~~~-----~~~~~~k~DlVia 317 (722)
|.|-....-.++|...||+|.+|+...+. .......+.||+++...... ....+.+||++++
T Consensus 7 gt~~fa~~~L~~L~~~~~~i~~Vvt~~d~~~g~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~l~~~~~Dliv~ 81 (305)
T 2bln_A 7 AYHDMGCLGIEALLAAGYEISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPDNVNHPLWVERIAQLSPDVIFS 81 (305)
T ss_dssp ECHHHHHHHHHHHHHTTCEEEEEECCCC------CCCCHHHHHHHHTCCEECCSCCCSHHHHHHHHHTCCSEEEE
T ss_pred EcCHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCcCccHHHHHHHHcCCCEECCCcCCcHHHHHHHHhcCCCEEEE
Confidence 34555555566777889999888754432 24455668999998754322 3344789999954
No 100
>3rfo_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure, cytosol; HET: PGE; 2.40A {Bacillus anthracis}
Probab=49.06 E-value=20 Score=37.79 Aligned_cols=69 Identities=22% Similarity=0.297 Sum_probs=44.8
Q ss_pred cEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCC--C---------ChhHHHhCCcEEEEcCCcc-----ch
Q 004942 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRG--G---------LMPELARRKIKVLEDRGEP-----SF 306 (722)
Q Consensus 243 kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g--~---------l~~el~~~gI~Vl~~~~~~-----~~ 306 (722)
.||+++ |.|-+.....++|.+.||+|..|+...+. + ......+.||+|+...... ..
T Consensus 5 mrIvf~-------Gtp~fa~~~L~~L~~~~~~v~~Vvt~pd~~~gRg~~l~~~pv~~~A~~~gIpv~~~~~~~~~~~~~~ 77 (317)
T 3rfo_A 5 IKVVFM-------GTPDFSVPVLRRLIEDGYDVIGVVTQPDRPVGRKKVLTPTPVKVEAEKHGIPVLQPLRIREKDEYEK 77 (317)
T ss_dssp SEEEEE-------CCSTTHHHHHHHHHHTTCEEEEEECCCCCEETTTTEECCCHHHHHHHHTTCCEECCSCTTSHHHHHH
T ss_pred eEEEEE-------eCCHHHHHHHHHHHHCCCcEEEEEeCCCcccCCCcccCCCHHHHHHHHcCCCEEccccCCCHHHHHH
Confidence 577766 45555556667888889999988854322 1 2344568999998642221 23
Q ss_pred hhhcCccEEEEC
Q 004942 307 KTSMKADLVIAG 318 (722)
Q Consensus 307 ~~~~k~DlVia~ 318 (722)
..+.+||++++-
T Consensus 78 l~~~~~Dliv~~ 89 (317)
T 3rfo_A 78 VLALEPDLIVTA 89 (317)
T ss_dssp HHHHCCSEEEES
T ss_pred HHhcCCCEEEEc
Confidence 347899999554
No 101
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=48.44 E-value=1.3e+02 Score=25.60 Aligned_cols=83 Identities=13% Similarity=0.174 Sum_probs=54.7
Q ss_pred cEEeCCchhhHHHHHHH--cCEEEEcCCCCCCCccHHHHHHHHh-----CCCEEE-cCC---CChhhhhccCccEEEECC
Q 004942 607 AMLWTPATTRVASLYSA--ADVYVINSQGLGETFGRVTIEAMAF-----GVPVLG-TDA---GGTKEIVEHNVTGLLHPP 675 (722)
Q Consensus 607 ~V~f~G~~~dv~~lysa--ADv~V~pS~~l~EgfglviLEAMA~-----GlPVVa-Td~---GG~~EIVe~g~tGlLvp~ 675 (722)
.|.......+...++.. .|++++-.. +.+.-|..+++.+.. .+|||. |.. ....+.+..|..+++..|
T Consensus 33 ~v~~~~~~~~a~~~l~~~~~dlii~d~~-l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~kp 111 (142)
T 3cg4_A 33 HIISADSGGQCIDLLKKGFSGVVLLDIM-MPGMDGWDTIRAILDNSLEQGIAIVMLTAKNAPDAKMIGLQEYVVDYITKP 111 (142)
T ss_dssp EEEEESSHHHHHHHHHTCCCEEEEEESC-CSSSCHHHHHHHHHHTTCCTTEEEEEEECTTCCCCSSTTGGGGEEEEEESS
T ss_pred EEEEeCCHHHHHHHHHhcCCCEEEEeCC-CCCCCHHHHHHHHHhhcccCCCCEEEEECCCCHHHHHHHHhcCccEEEeCC
Confidence 35544444455555544 488888765 355567778887754 467765 333 233455667788999998
Q ss_pred CCccHHHHHHHHHHhhc
Q 004942 676 GHPGAQVLAQNLRYLLK 692 (722)
Q Consensus 676 ~d~~~e~LA~aI~~LL~ 692 (722)
-+. +.|.+.|..+++
T Consensus 112 ~~~--~~l~~~i~~~~~ 126 (142)
T 3cg4_A 112 FDN--EDLIEKTTFFMG 126 (142)
T ss_dssp CCH--HHHHHHHHHHHH
T ss_pred CCH--HHHHHHHHHHHH
Confidence 887 899999988764
No 102
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=48.31 E-value=59 Score=30.13 Aligned_cols=76 Identities=17% Similarity=0.212 Sum_probs=49.3
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHH--hCCcEEEEcCCcc--c-hhh-hcCccEEEE
Q 004942 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELA--RRKIKVLEDRGEP--S-FKT-SMKADLVIA 317 (722)
Q Consensus 244 killI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~--~~gI~Vl~~~~~~--~-~~~-~~k~DlVia 317 (722)
+++.|+..-+..|-......||..|.+.|+.|.+|-+...+.+...+. ..+++++...... . +.. ..++|+|+.
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~yD~vii 81 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNWSKAGKAAFDVFTAASEKDVYGIRKDLADYDFAIV 81 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHTTSCCSSEEEECCSHHHHHTHHHHTTTSSEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhcCCCCCcEEecCcHHHHHHHHHhcCCCCEEEE
Confidence 566666655666788889999999999999999998665554444332 3446666654321 1 111 345787766
Q ss_pred CC
Q 004942 318 GS 319 (722)
Q Consensus 318 ~S 319 (722)
-+
T Consensus 82 D~ 83 (206)
T 4dzz_A 82 DG 83 (206)
T ss_dssp EC
T ss_pred EC
Confidence 53
No 103
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=48.21 E-value=1.3e+02 Score=25.56 Aligned_cols=107 Identities=11% Similarity=0.066 Sum_probs=64.0
Q ss_pred ccceeEEEcCCch-hHHHHHHhhhccCCCCCCchhHHHHHHHHHhcCCCCCcEEeCCchhhHHHHHHH--cCEEEEcCCC
Q 004942 557 HLRRKVLSKSDGK-QQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYSA--ADVYVINSQG 633 (722)
Q Consensus 557 ~~~~~lli~G~G~-~~~~Lk~lI~~~Gs~sn~~~Y~~el~~~l~~~~~L~~~V~f~G~~~dv~~lysa--ADv~V~pS~~ 633 (722)
....+++++.+-+ ..+.++..+... +. .|.......+...++.. .|++++
T Consensus 16 ~~~~~ilivdd~~~~~~~l~~~L~~~---------------------g~--~v~~~~~~~~al~~l~~~~~dlvi~---- 68 (137)
T 2pln_A 16 RGSMRVLLIEKNSVLGGEIEKGLNVK---------------------GF--MADVTESLEDGEYLMDIRNYDLVMV---- 68 (137)
T ss_dssp TTCSEEEEECSCHHHHHHHHHHHHHT---------------------TC--EEEEESCHHHHHHHHHHSCCSEEEE----
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHc---------------------Cc--EEEEeCCHHHHHHHHHcCCCCEEEE----
Confidence 3445666666654 345555555322 33 35444444444444444 488882
Q ss_pred CCCCccHHHHHHHH--h-CCCEEE-cCCCC---hhhhhccCccEEEECCC-CccHHHHHHHHHHhhcC
Q 004942 634 LGETFGRVTIEAMA--F-GVPVLG-TDAGG---TKEIVEHNVTGLLHPPG-HPGAQVLAQNLRYLLKN 693 (722)
Q Consensus 634 l~EgfglviLEAMA--~-GlPVVa-Td~GG---~~EIVe~g~tGlLvp~~-d~~~e~LA~aI~~LL~n 693 (722)
.+.-|.-+++.+. . .+|||. |.... ..+.+..|..+++..|- +. +.|...|..++..
T Consensus 69 -~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~--~~l~~~i~~~~~~ 133 (137)
T 2pln_A 69 -SDKNALSFVSRIKEKHSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSI--KALVARIEARLRF 133 (137)
T ss_dssp -CSTTHHHHHHHHHHHSTTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCSCH--HHHHHHHHHHTC-
T ss_pred -cCccHHHHHHHHHhcCCCccEEEEeCCCCHHHHHHHHHcCCceeeeCCCCCH--HHHHHHHHHHHhh
Confidence 3334556666654 3 778876 44333 23455678899999988 87 9999999988764
No 104
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=47.62 E-value=27 Score=35.67 Aligned_cols=64 Identities=9% Similarity=0.046 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhCCCEEEEEEEcCCCC-----ChhHHHhCCcEEEEcCCcc--chhh---hcCccEEEECCch
Q 004942 258 PLSMMELATELLSCGATVSAVVLSKRGG-----LMPELARRKIKVLEDRGEP--SFKT---SMKADLVIAGSAV 321 (722)
Q Consensus 258 plsm~eLA~eL~s~G~~VsvV~ls~~g~-----l~~el~~~gI~Vl~~~~~~--~~~~---~~k~DlVia~Sav 321 (722)
...=..++++|++.|++|.+++-..... ....+...++.++..+... .+.. ..++|+||...+.
T Consensus 20 G~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi~~a~~ 93 (346)
T 3i6i_A 20 GFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDIVVSTVGG 93 (346)
T ss_dssp SHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCCEEEECCCG
T ss_pred cHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCCEEEECCch
Confidence 4445567889999999999888332111 1123456889998765533 3333 3479999877544
No 105
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=47.08 E-value=43 Score=33.12 Aligned_cols=71 Identities=8% Similarity=0.093 Sum_probs=44.2
Q ss_pred cEEEEEeCCCCCCcHHHHHHHHHHHHHhCCC--EEEEEEEcCCCC-ChhHHHhCCcEEEEcCCc---------c---chh
Q 004942 243 RKFILIFHELSMTGAPLSMMELATELLSCGA--TVSAVVLSKRGG-LMPELARRKIKVLEDRGE---------P---SFK 307 (722)
Q Consensus 243 kkillI~hels~gGaplsm~eLA~eL~s~G~--~VsvV~ls~~g~-l~~el~~~gI~Vl~~~~~---------~---~~~ 307 (722)
+||+++.. |.+-.+..+..+|.+.++ +|.+|...++.. ......+.||+++..... . ...
T Consensus 2 ~rI~vl~S-----G~g~~~~~~l~~l~~~~~~~~i~~Vvs~~~~~~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l 76 (216)
T 2ywr_A 2 LKIGVLVS-----GRGSNLQAIIDAIESGKVNASIELVISDNPKAYAIERCKKHNVECKVIQRKEFPSKKEFEERMALEL 76 (216)
T ss_dssp EEEEEEEC-----SCCHHHHHHHHHHHTTSSCEEEEEEEESCTTCHHHHHHHHHTCCEEECCGGGSSSHHHHHHHHHHHH
T ss_pred CEEEEEEe-----CCcHHHHHHHHHHHhCCCCCeEEEEEeCCCChHHHHHHHHcCCCEEEeCcccccchhhhhHHHHHHH
Confidence 35665532 333457778888888777 777776554333 334566899999974332 1 233
Q ss_pred hhcCccEEEEC
Q 004942 308 TSMKADLVIAG 318 (722)
Q Consensus 308 ~~~k~DlVia~ 318 (722)
++.+||++++-
T Consensus 77 ~~~~~Dliv~a 87 (216)
T 2ywr_A 77 KKKGVELVVLA 87 (216)
T ss_dssp HHTTCCEEEES
T ss_pred HhcCCCEEEEe
Confidence 47899999543
No 106
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=46.99 E-value=1.4e+02 Score=25.87 Aligned_cols=70 Identities=11% Similarity=0.174 Sum_probs=49.2
Q ss_pred cCEEEEcCCCCCCCccHHHHHHHH---hCCCEEEc-CCCC---hhhhhccCccEEEECCCCccHHHHHHHHHHhhcCHHH
Q 004942 624 ADVYVINSQGLGETFGRVTIEAMA---FGVPVLGT-DAGG---TKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNPSV 696 (722)
Q Consensus 624 ADv~V~pS~~l~EgfglviLEAMA---~GlPVVaT-d~GG---~~EIVe~g~tGlLvp~~d~~~e~LA~aI~~LL~np~~ 696 (722)
.|++++-.. +.+.-|.-+++.+. ..+|||.. .... ..+.+..|..+++..|-+. +.|...|..+++....
T Consensus 48 ~dliild~~-l~~~~g~~~~~~l~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~--~~L~~~i~~~~~~~~~ 124 (155)
T 1qkk_A 48 AGIVISDIR-MPGMDGLALFRKILALDPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAA--DRLVQSARRAEEKRRL 124 (155)
T ss_dssp CSEEEEESC-CSSSCHHHHHHHHHHHCTTSCEEEEECGGGHHHHHHHHHTTCCEEEESSCCH--HHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHHhhCCCCCEEEEECCCChHHHHHHHhcCCCeEEeCCCCH--HHHHHHHHHHHHHHHH
Confidence 488888765 34555666776663 36888764 3332 2345567889999998888 9999999999875544
No 107
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Probab=46.13 E-value=41 Score=30.91 Aligned_cols=64 Identities=14% Similarity=0.113 Sum_probs=37.9
Q ss_pred CcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCcc--chhh-hcCccEEEECCc
Q 004942 255 TGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP--SFKT-SMKADLVIAGSA 320 (722)
Q Consensus 255 gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~--~~~~-~~k~DlVia~Sa 320 (722)
||+...-..++++|.+.|++|.+++-+ ..-...+...++.++..+... .+.. -.++|+|+....
T Consensus 10 GatG~iG~~l~~~l~~~g~~V~~~~r~--~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~ 76 (206)
T 1hdo_A 10 GATGQTGLTTLAQAVQAGYEVTVLVRD--SSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLG 76 (206)
T ss_dssp STTSHHHHHHHHHHHHTTCEEEEEESC--GGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCC
T ss_pred cCCcHHHHHHHHHHHHCCCeEEEEEeC--hhhcccccCCceEEEEecCCCHHHHHHHHcCCCEEEECcc
Confidence 333445566888999999999988732 211111224567777655432 3333 236899877654
No 108
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=45.66 E-value=71 Score=27.30 Aligned_cols=86 Identities=14% Similarity=0.227 Sum_probs=55.9
Q ss_pred cEEeCCchhhHHHHHHH---cCEEEEcCCCCC-CCccHHHHHHHHh-----CCCEEEc-CCCCh---hhhhccCccEEEE
Q 004942 607 AMLWTPATTRVASLYSA---ADVYVINSQGLG-ETFGRVTIEAMAF-----GVPVLGT-DAGGT---KEIVEHNVTGLLH 673 (722)
Q Consensus 607 ~V~f~G~~~dv~~lysa---ADv~V~pS~~l~-EgfglviLEAMA~-----GlPVVaT-d~GG~---~EIVe~g~tGlLv 673 (722)
.|.......+...++.. .|++++-.. +. +.-|..+++.+.. .+|||.- ..... .+.+..|..+++.
T Consensus 31 ~v~~~~~~~~a~~~l~~~~~~dlvi~D~~-l~~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~ 109 (140)
T 3lua_A 31 DFIEVENLKKFYSIFKDLDSITLIIMDIA-FPVEKEGLEVLSAIRNNSRTANTPVIIATKSDNPGYRHAALKFKVSDYIL 109 (140)
T ss_dssp EEEEECSHHHHHTTTTTCCCCSEEEECSC-SSSHHHHHHHHHHHHHSGGGTTCCEEEEESCCCHHHHHHHHHSCCSEEEE
T ss_pred cEEEECCHHHHHHHHhcCCCCcEEEEeCC-CCCCCcHHHHHHHHHhCcccCCCCEEEEeCCCCHHHHHHHHHcCCCEEEE
Confidence 34444333444444544 588888765 34 4456677776654 7888764 33332 3445678899999
Q ss_pred CCCCccHHHHHHHHHHhhcCHH
Q 004942 674 PPGHPGAQVLAQNLRYLLKNPS 695 (722)
Q Consensus 674 p~~d~~~e~LA~aI~~LL~np~ 695 (722)
.|-+. +.|.++|..+++...
T Consensus 110 KP~~~--~~l~~~i~~~~~~~~ 129 (140)
T 3lua_A 110 KPYPT--KRLENSVRSVLKICQ 129 (140)
T ss_dssp SSCCT--THHHHHHHHHHCC--
T ss_pred CCCCH--HHHHHHHHHHHHhcc
Confidence 99888 899999999987543
No 109
>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*
Probab=45.17 E-value=40 Score=33.73 Aligned_cols=67 Identities=16% Similarity=-0.051 Sum_probs=36.8
Q ss_pred CcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhC----CcEEEEcCCcc--chhh---hcCccEEEECCch
Q 004942 255 TGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARR----KIKVLEDRGEP--SFKT---SMKADLVIAGSAV 321 (722)
Q Consensus 255 gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~----gI~Vl~~~~~~--~~~~---~~k~DlVia~Sav 321 (722)
||+...-..|++.|.+.|++|.++.-.....-...+... ++.++..+... .+.. ..++|+||.+.+.
T Consensus 10 GatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~ 85 (345)
T 2z1m_A 10 GIRGQDGAYLAKLLLEKGYEVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIEKVQPDEVYNLAAQ 85 (345)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTCHHHHHHHHHHHCCSEEEECCCC
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEECCCcccccccHhhccccCceeEEECCCCCHHHHHHHHHhcCCCEEEECCCC
Confidence 344445566888999999999887632221111233322 45555433221 2222 3378999877654
No 110
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=45.08 E-value=34 Score=37.16 Aligned_cols=74 Identities=15% Similarity=0.086 Sum_probs=47.3
Q ss_pred cccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcC--CCCChhHHHhCCcEEEEcCCccchhhhcCccEEEEC
Q 004942 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSK--RGGLMPELARRKIKVLEDRGEPSFKTSMKADLVIAG 318 (722)
Q Consensus 241 ~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~--~g~l~~el~~~gI~Vl~~~~~~~~~~~~k~DlVia~ 318 (722)
..++|++| +.||+.++ +|+.|.++||+|++.=... .......|...||++..-.....+. ...+|+|+..
T Consensus 8 ~~k~v~vi----G~G~sG~s---~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~gi~~~~g~~~~~~~-~~~~d~vv~s 79 (451)
T 3lk7_A 8 ENKKVLVL----GLARSGEA---AARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSHPLELL-DEDFCYMIKN 79 (451)
T ss_dssp TTCEEEEE----CCTTTHHH---HHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTTCEEEESCCCGGGG-GSCEEEEEEC
T ss_pred CCCEEEEE----eeCHHHHH---HHHHHHhCCCEEEEEeCCcccCChHHHHHHhCCCEEEECCChHHhh-cCCCCEEEEC
Confidence 35677665 44666555 4899999999999875221 1234456788999988533322221 1128999988
Q ss_pred Cchh
Q 004942 319 SAVC 322 (722)
Q Consensus 319 Sav~ 322 (722)
.++.
T Consensus 80 pgi~ 83 (451)
T 3lk7_A 80 PGIP 83 (451)
T ss_dssp TTSC
T ss_pred CcCC
Confidence 7664
No 111
>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}
Probab=45.03 E-value=48 Score=32.99 Aligned_cols=76 Identities=13% Similarity=0.030 Sum_probs=40.4
Q ss_pred chhhhhccccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCcc--chhh---
Q 004942 234 GDFARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP--SFKT--- 308 (722)
Q Consensus 234 ~~f~~~~~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~--~~~~--- 308 (722)
.+|..+..+++|++. ||+...=..|++.|.+.|++|.++.-.... ..+ ++.++..+... .+..
T Consensus 4 ~~~~~~~~~~~vlVT------GatG~iG~~l~~~L~~~G~~V~~~~r~~~~---~~l---~~~~~~~Dl~d~~~~~~~~~ 71 (321)
T 2pk3_A 4 SHHHHHHGSMRALIT------GVAGFVGKYLANHLTEQNVEVFGTSRNNEA---KLP---NVEMISLDIMDSQRVKKVIS 71 (321)
T ss_dssp ---------CEEEEE------TTTSHHHHHHHHHHHHTTCEEEEEESCTTC---CCT---TEEEEECCTTCHHHHHHHHH
T ss_pred cccccccCcceEEEE------CCCChHHHHHHHHHHHCCCEEEEEecCCcc---ccc---eeeEEECCCCCHHHHHHHHH
Confidence 346666666666533 344445566888999999999988733222 112 66666544322 2322
Q ss_pred hcCccEEEECCch
Q 004942 309 SMKADLVIAGSAV 321 (722)
Q Consensus 309 ~~k~DlVia~Sav 321 (722)
..++|+||...+.
T Consensus 72 ~~~~d~vih~A~~ 84 (321)
T 2pk3_A 72 DIKPDYIFHLAAK 84 (321)
T ss_dssp HHCCSEEEECCSC
T ss_pred hcCCCEEEEcCcc
Confidence 3468999877654
No 112
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=44.67 E-value=1.4e+02 Score=25.14 Aligned_cols=85 Identities=15% Similarity=0.121 Sum_probs=56.2
Q ss_pred cEEeCCchhhHHHHHHH--cCEEEEcCCCCCCCccHHHHHHHHh---CCCEEEcCC-CC---hhhhhccCccEEEECCCC
Q 004942 607 AMLWTPATTRVASLYSA--ADVYVINSQGLGETFGRVTIEAMAF---GVPVLGTDA-GG---TKEIVEHNVTGLLHPPGH 677 (722)
Q Consensus 607 ~V~f~G~~~dv~~lysa--ADv~V~pS~~l~EgfglviLEAMA~---GlPVVaTd~-GG---~~EIVe~g~tGlLvp~~d 677 (722)
.|.......+....+.. .|++++-.. +.+.-|..+++.+.. .+|||..-. .. ..+.+..|..+++..|-+
T Consensus 33 ~v~~~~~~~~a~~~l~~~~~dlvi~d~~-l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~ 111 (137)
T 3hdg_A 33 EVWSAGDGEEGERLFGLHAPDVIITDIR-MPKLGGLEMLDRIKAGGAKPYVIVISAFSEMKYFIKAIELGVHLFLPKPIE 111 (137)
T ss_dssp CEEEESSHHHHHHHHHHHCCSEEEECSS-CSSSCHHHHHHHHHHTTCCCEEEECCCCCCHHHHHHHHHHCCSEECCSSCC
T ss_pred EEEEECCHHHHHHHHhccCCCEEEEeCC-CCCCCHHHHHHHHHhcCCCCcEEEEecCcChHHHHHHHhCCcceeEcCCCC
Confidence 34444444444444433 488888765 456667777776653 678877433 33 234566788999999888
Q ss_pred ccHHHHHHHHHHhhcCH
Q 004942 678 PGAQVLAQNLRYLLKNP 694 (722)
Q Consensus 678 ~~~e~LA~aI~~LL~np 694 (722)
. +.|.+.|..+++..
T Consensus 112 ~--~~l~~~i~~~~~~~ 126 (137)
T 3hdg_A 112 P--GRLMETLEDFRHIK 126 (137)
T ss_dssp H--HHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHHH
Confidence 8 99999999987643
No 113
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=44.49 E-value=1.3e+02 Score=24.63 Aligned_cols=84 Identities=13% Similarity=0.137 Sum_probs=54.6
Q ss_pred cEEeCCchhhHHHHHHH--cCEEEEcCCCCC-CCccHHHHHHHH-----hCCCEEEcCCCCh----hhhhccCccEEEEC
Q 004942 607 AMLWTPATTRVASLYSA--ADVYVINSQGLG-ETFGRVTIEAMA-----FGVPVLGTDAGGT----KEIVEHNVTGLLHP 674 (722)
Q Consensus 607 ~V~f~G~~~dv~~lysa--ADv~V~pS~~l~-EgfglviLEAMA-----~GlPVVaTd~GG~----~EIVe~g~tGlLvp 674 (722)
.|.......+....+.. .|++++-.. +. ..-|..+++.+. ..+|||.. .... .+.+..|..+++..
T Consensus 31 ~v~~~~~~~~a~~~~~~~~~dlvi~d~~-~~~~~~g~~~~~~l~~~~~~~~~~ii~~-~~~~~~~~~~~~~~g~~~~l~k 108 (127)
T 2gkg_A 31 TVDETTDGKGSVEQIRRDRPDLVVLAVD-LSAGQNGYLICGKLKKDDDLKNVPIVII-GNPDGFAQHRKLKAHADEYVAK 108 (127)
T ss_dssp EEEEECCHHHHHHHHHHHCCSEEEEESB-CGGGCBHHHHHHHHHHSTTTTTSCEEEE-ECGGGHHHHHHSTTCCSEEEES
T ss_pred eEEEecCHHHHHHHHHhcCCCEEEEeCC-CCCCCCHHHHHHHHhcCccccCCCEEEE-ecCCchhHHHHHHhCcchheeC
Confidence 34444433344344433 588887654 23 445677777774 46899887 4322 33456788899999
Q ss_pred CCCccHHHHHHHHHHhhcCH
Q 004942 675 PGHPGAQVLAQNLRYLLKNP 694 (722)
Q Consensus 675 ~~d~~~e~LA~aI~~LL~np 694 (722)
|-+. +.|.+.|..+++.+
T Consensus 109 p~~~--~~l~~~i~~~~~~~ 126 (127)
T 2gkg_A 109 PVDA--DQLVERAGALIGFP 126 (127)
T ss_dssp SCCH--HHHHHHHHHHHCCC
T ss_pred CCCH--HHHHHHHHHHHcCC
Confidence 8888 99999999887653
No 114
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=43.91 E-value=54 Score=35.88 Aligned_cols=77 Identities=22% Similarity=0.240 Sum_probs=50.4
Q ss_pred hhhccccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCC-hhH----HHhCC---cEEEEcCCcc---c
Q 004942 237 ARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGL-MPE----LARRK---IKVLEDRGEP---S 305 (722)
Q Consensus 237 ~~~~~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l-~~e----l~~~g---I~Vl~~~~~~---~ 305 (722)
..++..||+++... +.....|++.|.++|.+|..+........ ..+ +...+ ..++...... .
T Consensus 307 ~~~l~gkrv~i~~~-------~~~~~~l~~~L~elG~~vv~v~~~~~~~~~~~~~~~ll~~~~~~~~~v~~~~d~~~l~~ 379 (458)
T 1mio_B 307 QQYLQGKKVALLGD-------PDEIIALSKFIIELGAIPKYVVTGTPGMKFQKEIDAMLAEAGIEGSKVKVEGDFFDVHQ 379 (458)
T ss_dssp HHHHTTCEEEEEEC-------HHHHHHHHHHHHTTTCEEEEEEESSCCHHHHHHHHHHHHTTTCCSCEEEESCBHHHHHH
T ss_pred HHHcCCCEEEEEcC-------chHHHHHHHHHHHCCCEEEEEEeCCCCHHHHHHHHHHHHhcCCCCCEEEECCCHHHHHH
Confidence 34567889987643 57788899999999999998875553321 111 23333 4566642222 4
Q ss_pred hhhhcCccEEEECCc
Q 004942 306 FKTSMKADLVIAGSA 320 (722)
Q Consensus 306 ~~~~~k~DlVia~Sa 320 (722)
+.++.+||+++.++.
T Consensus 380 ~i~~~~pDl~ig~~~ 394 (458)
T 1mio_B 380 WIKNEGVDLLISNTY 394 (458)
T ss_dssp HHHHSCCSEEEESGG
T ss_pred HHHhcCCCEEEeCcc
Confidence 455789999988864
No 115
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=41.22 E-value=1.6e+02 Score=24.76 Aligned_cols=76 Identities=16% Similarity=0.213 Sum_probs=50.1
Q ss_pred hhHHHHHHH--cCEEEEcCCCCC-CCccHHHHHHHH--hCCCEEE-cCCCCh---hhhhccCccEEEECCCCccHHHHHH
Q 004942 615 TRVASLYSA--ADVYVINSQGLG-ETFGRVTIEAMA--FGVPVLG-TDAGGT---KEIVEHNVTGLLHPPGHPGAQVLAQ 685 (722)
Q Consensus 615 ~dv~~lysa--ADv~V~pS~~l~-EgfglviLEAMA--~GlPVVa-Td~GG~---~EIVe~g~tGlLvp~~d~~~e~LA~ 685 (722)
.+...++.. .|++++-.. +. +.-|..+++.+. ..+|||. |..... .+.+..|..+++..|-+. +.|..
T Consensus 44 ~~a~~~~~~~~~dlii~d~~-~~~~~~g~~~~~~l~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~--~~l~~ 120 (140)
T 3cg0_A 44 EEAVRCAPDLRPDIALVDIM-LCGALDGVETAARLAAGCNLPIIFITSSQDVETFQRAKRVNPFGYLAKPVAA--DTLHR 120 (140)
T ss_dssp HHHHHHHHHHCCSEEEEESS-CCSSSCHHHHHHHHHHHSCCCEEEEECCCCHHHHHHHHTTCCSEEEEESCCH--HHHHH
T ss_pred HHHHHHHHhCCCCEEEEecC-CCCCCCHHHHHHHHHhCCCCCEEEEecCCCHHHHHHHHhcCCCEEEeCCCCH--HHHHH
Confidence 344344433 599888765 23 345666666654 5788876 444433 345667889999998887 89999
Q ss_pred HHHHhhcC
Q 004942 686 NLRYLLKN 693 (722)
Q Consensus 686 aI~~LL~n 693 (722)
.|..+++.
T Consensus 121 ~i~~~~~~ 128 (140)
T 3cg0_A 121 SIEMAIHK 128 (140)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99888753
No 116
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=41.12 E-value=29 Score=37.78 Aligned_cols=36 Identities=17% Similarity=0.154 Sum_probs=26.9
Q ss_pred cEEEEEeCCCCCCcHHH-HHHHHHHHHHhCCCEEEEEEEc
Q 004942 243 RKFILIFHELSMTGAPL-SMMELATELLSCGATVSAVVLS 281 (722)
Q Consensus 243 kkillI~hels~gGapl-sm~eLA~eL~s~G~~VsvV~ls 281 (722)
.+|+++.. .+.+.+ -|++||++|.++||+|++++..
T Consensus 9 ~~vl~~p~---p~~GHi~P~l~La~~L~~rG~~VT~v~t~ 45 (482)
T 2pq6_A 9 PHVVMIPY---PVQGHINPLFKLAKLLHLRGFHITFVNTE 45 (482)
T ss_dssp CEEEEECC---SSHHHHHHHHHHHHHHHHTTCEEEEEEEH
T ss_pred CEEEEecC---ccchhHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 46666542 344444 5999999999999999999854
No 117
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=40.92 E-value=42 Score=36.77 Aligned_cols=71 Identities=17% Similarity=0.118 Sum_probs=45.4
Q ss_pred cccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHH-hCCcEEEEcCCccchhhhcCccEEEECC
Q 004942 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELA-RRKIKVLEDRGEPSFKTSMKADLVIAGS 319 (722)
Q Consensus 241 ~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~-~~gI~Vl~~~~~~~~~~~~k~DlVia~S 319 (722)
..++++++ | +..+....++.|.+.|++|+++....... ..++. ..++.++......... ..+|+|++.+
T Consensus 11 ~~~~vlVv------G-gG~va~~k~~~L~~~ga~V~vi~~~~~~~-~~~l~~~~~i~~~~~~~~~~~l--~~~~lVi~at 80 (457)
T 1pjq_A 11 RDRDCLIV------G-GGDVAERKARLLLEAGARLTVNALTFIPQ-FTVWANEGMLTLVEGPFDETLL--DSCWLAIAAT 80 (457)
T ss_dssp BTCEEEEE------C-CSHHHHHHHHHHHHTTBEEEEEESSCCHH-HHHHHTTTSCEEEESSCCGGGG--TTCSEEEECC
T ss_pred CCCEEEEE------C-CCHHHHHHHHHHHhCcCEEEEEcCCCCHH-HHHHHhcCCEEEEECCCCcccc--CCccEEEEcC
Confidence 45777766 3 33467788899999999999998432221 22333 3568887755443322 3789998876
Q ss_pred ch
Q 004942 320 AV 321 (722)
Q Consensus 320 av 321 (722)
-.
T Consensus 81 ~~ 82 (457)
T 1pjq_A 81 DD 82 (457)
T ss_dssp SC
T ss_pred CC
Confidence 44
No 118
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=40.82 E-value=34 Score=30.61 Aligned_cols=63 Identities=14% Similarity=0.096 Sum_probs=43.4
Q ss_pred cHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCcc-chhh---hcCccEEEECCc
Q 004942 256 GAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP-SFKT---SMKADLVIAGSA 320 (722)
Q Consensus 256 Gaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~-~~~~---~~k~DlVia~Sa 320 (722)
|+...-..+|+.|.+.|++|.++. ........+...|+.++...... .... -.++|+|++...
T Consensus 14 G~G~~G~~la~~L~~~g~~v~vid--~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~ 80 (140)
T 3fwz_A 14 GYGRVGSLLGEKLLASDIPLVVIE--TSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIP 80 (140)
T ss_dssp CCSHHHHHHHHHHHHTTCCEEEEE--SCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCS
T ss_pred CcCHHHHHHHHHHHHCCCCEEEEE--CCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECC
Confidence 345566678999999999999997 33445566777899988755433 2222 357899887643
No 119
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=40.71 E-value=1e+02 Score=31.01 Aligned_cols=66 Identities=17% Similarity=0.086 Sum_probs=40.5
Q ss_pred CcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChh---HHHh-------CCcEEEEcCCcc--chhh-hcCccEEEECCch
Q 004942 255 TGAPLSMMELATELLSCGATVSAVVLSKRGGLMP---ELAR-------RKIKVLEDRGEP--SFKT-SMKADLVIAGSAV 321 (722)
Q Consensus 255 gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~---el~~-------~gI~Vl~~~~~~--~~~~-~~k~DlVia~Sav 321 (722)
||+...=..|++.|.+.|++|.+++-... .... .+.. .++.++..+... .+.. -.++|+||...+.
T Consensus 32 GatG~iG~~l~~~L~~~g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih~A~~ 110 (351)
T 3ruf_A 32 GVAGFIGSNLLEKLLKLNQVVIGLDNFST-GHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGVDHVLHQAAL 110 (351)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEECCSS-CCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTCSEEEECCCC
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEeCCCC-CchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCCCEEEECCcc
Confidence 44455556788899999999999873322 2222 2222 678887755433 2333 2379999777553
No 120
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=40.61 E-value=1.8e+02 Score=25.17 Aligned_cols=90 Identities=12% Similarity=0.070 Sum_probs=58.0
Q ss_pred cEEeCCchhhHHHHHHH---cCEEEEcCCCCCCCccHHHHHHHH---hCCCEEE-cCCCC---hhhhhccC-ccEEEECC
Q 004942 607 AMLWTPATTRVASLYSA---ADVYVINSQGLGETFGRVTIEAMA---FGVPVLG-TDAGG---TKEIVEHN-VTGLLHPP 675 (722)
Q Consensus 607 ~V~f~G~~~dv~~lysa---ADv~V~pS~~l~EgfglviLEAMA---~GlPVVa-Td~GG---~~EIVe~g-~tGlLvp~ 675 (722)
.|.......+....+.. .|++++-.. +.+.-|..+++.+. ..+|||. |.... ..+.+..| ..+++..|
T Consensus 29 ~v~~~~~~~~a~~~l~~~~~~dlvi~D~~-l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP 107 (151)
T 3kcn_A 29 EVTTCESGPEALACIKKSDPFSVIMVDMR-MPGMEGTEVIQKARLISPNSVYLMLTGNQDLTTAMEAVNEGQVFRFLNKP 107 (151)
T ss_dssp EEEEESSHHHHHHHHHHSCCCSEEEEESC-CSSSCHHHHHHHHHHHCSSCEEEEEECGGGHHHHHHHHHHTCCSEEEESS
T ss_pred eEEEeCCHHHHHHHHHcCCCCCEEEEeCC-CCCCcHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHHHcCCeeEEEcCC
Confidence 34444444454455543 388888765 45566777777664 3677765 33333 23445567 78999999
Q ss_pred CCccHHHHHHHHHHhhcCHHHHHH
Q 004942 676 GHPGAQVLAQNLRYLLKNPSVRER 699 (722)
Q Consensus 676 ~d~~~e~LA~aI~~LL~np~~r~~ 699 (722)
-+. +.|.++|..+++......+
T Consensus 108 ~~~--~~L~~~i~~~l~~~~~~~~ 129 (151)
T 3kcn_A 108 CQM--SDIKAAINAGIKQYDLVTS 129 (151)
T ss_dssp CCH--HHHHHHHHHHHHHHHHHHH
T ss_pred CCH--HHHHHHHHHHHHHHHHHHH
Confidence 888 9999999999876554333
No 121
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}
Probab=38.95 E-value=39 Score=33.38 Aligned_cols=77 Identities=9% Similarity=0.078 Sum_probs=42.6
Q ss_pred ccccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCC---ChhHHHhCCcEEEEcCCcc-------chhh-
Q 004942 240 VWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG---LMPELARRKIKVLEDRGEP-------SFKT- 308 (722)
Q Consensus 240 ~~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~---l~~el~~~gI~Vl~~~~~~-------~~~~- 308 (722)
|.+.++++|+- |+.-.=..+|+.|.+.|++|.++....... +..++...+-++.....+. .+..
T Consensus 23 m~~~k~vlITG-----as~gIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~ 97 (272)
T 4e3z_A 23 MSDTPVVLVTG-----GSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITESGGEAVAIPGDVGNAADIAAMFSA 97 (272)
T ss_dssp -CCSCEEEETT-----TTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred ccCCCEEEEEC-----CCchHHHHHHHHHHHCCCEEEEEcCCChhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence 55567777743 333334568899999999997765222111 2233444454544333332 1111
Q ss_pred ----hcCccEEEECCch
Q 004942 309 ----SMKADLVIAGSAV 321 (722)
Q Consensus 309 ----~~k~DlVia~Sav 321 (722)
.-++|++|.+..+
T Consensus 98 ~~~~~g~id~li~nAg~ 114 (272)
T 4e3z_A 98 VDRQFGRLDGLVNNAGI 114 (272)
T ss_dssp HHHHHSCCCEEEECCCC
T ss_pred HHHhCCCCCEEEECCCC
Confidence 1378999888654
No 122
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=38.40 E-value=77 Score=28.49 Aligned_cols=71 Identities=15% Similarity=0.188 Sum_probs=43.0
Q ss_pred cccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHH---HhCCcEEEEcCCcc--chhh--hcCcc
Q 004942 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPEL---ARRKIKVLEDRGEP--SFKT--SMKAD 313 (722)
Q Consensus 241 ~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el---~~~gI~Vl~~~~~~--~~~~--~~k~D 313 (722)
.+++++++ |+...-..+++.|.+.|++|+++... .....+.+ ...|+.++.-+... .+.. -.++|
T Consensus 2 ~~~~vlI~-------G~G~vG~~la~~L~~~g~~V~vid~~-~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad 73 (153)
T 1id1_A 2 RKDHFIVC-------GHSILAINTILQLNQRGQNVTVISNL-PEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCR 73 (153)
T ss_dssp CCSCEEEE-------CCSHHHHHHHHHHHHTTCCEEEEECC-CHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCS
T ss_pred CCCcEEEE-------CCCHHHHHHHHHHHHCCCCEEEEECC-ChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCC
Confidence 44566655 23444567899999999999999722 11111122 24578888754432 2222 35789
Q ss_pred EEEECC
Q 004942 314 LVIAGS 319 (722)
Q Consensus 314 lVia~S 319 (722)
+|++.+
T Consensus 74 ~vi~~~ 79 (153)
T 1id1_A 74 AILALS 79 (153)
T ss_dssp EEEECS
T ss_pred EEEEec
Confidence 998765
No 123
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=37.80 E-value=58 Score=32.51 Aligned_cols=71 Identities=13% Similarity=0.120 Sum_probs=43.0
Q ss_pred cEEEEEeCCCCCCcHHHHHHHHHHHHHhC--CCEEEEEEEcCCCCC-hhHHHhCCcEEEEcCCc----c---chhhhcCc
Q 004942 243 RKFILIFHELSMTGAPLSMMELATELLSC--GATVSAVVLSKRGGL-MPELARRKIKVLEDRGE----P---SFKTSMKA 312 (722)
Q Consensus 243 kkillI~hels~gGaplsm~eLA~eL~s~--G~~VsvV~ls~~g~l-~~el~~~gI~Vl~~~~~----~---~~~~~~k~ 312 (722)
+||.+++. |.+-.+..|..++.+. +++|.+|...++... .....+.||+++..+.. . ...++.+|
T Consensus 9 ~ri~vl~S-----G~gsnl~all~~~~~~~~~~~I~~Vis~~~~a~~l~~A~~~gIp~~~~~~~~~~~~~~~~~L~~~~~ 83 (215)
T 3kcq_A 9 LRVGVLIS-----GRGSNLEALAKAFSTEESSVVISCVISNNAEARGLLIAQSYGIPTFVVKRKPLDIEHISTVLREHDV 83 (215)
T ss_dssp EEEEEEES-----SCCHHHHHHHHHTCCC-CSEEEEEEEESCTTCTHHHHHHHTTCCEEECCBTTBCHHHHHHHHHHTTC
T ss_pred CEEEEEEE-----CCcHHHHHHHHHHHcCCCCcEEEEEEeCCcchHHHHHHHHcCCCEEEeCcccCChHHHHHHHHHhCC
Confidence 46655433 2333455566666543 378888876554332 34566899999975432 1 33448899
Q ss_pred cEEEEC
Q 004942 313 DLVIAG 318 (722)
Q Consensus 313 DlVia~ 318 (722)
|+|++-
T Consensus 84 Dlivla 89 (215)
T 3kcq_A 84 DLVCLA 89 (215)
T ss_dssp SEEEES
T ss_pred CEEEEe
Confidence 999544
No 124
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=37.77 E-value=78 Score=31.56 Aligned_cols=71 Identities=8% Similarity=0.147 Sum_probs=42.3
Q ss_pred cEEEEEeCCCCCCcHHHHHHHHHHHHHh-CCCEEEEEEEcCCCCC-hhHHHhCCcEEEEcCCc---------c---chhh
Q 004942 243 RKFILIFHELSMTGAPLSMMELATELLS-CGATVSAVVLSKRGGL-MPELARRKIKVLEDRGE---------P---SFKT 308 (722)
Q Consensus 243 kkillI~hels~gGaplsm~eLA~eL~s-~G~~VsvV~ls~~g~l-~~el~~~gI~Vl~~~~~---------~---~~~~ 308 (722)
+||+++.. .+|.. +..|.....+ .+++|.+|...++... .+...+.||+++..+.. . ...+
T Consensus 6 ~riavl~S---G~Gsn--l~all~~~~~~~~~eI~~Vis~~~~a~~~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~ 80 (215)
T 3tqr_A 6 LPIVVLIS---GNGTN--LQAIIGAIQKGLAIEIRAVISNRADAYGLKRAQQADIPTHIIPHEEFPSRTDFESTLQKTID 80 (215)
T ss_dssp EEEEEEES---SCCHH--HHHHHHHHHTTCSEEEEEEEESCTTCHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHH
T ss_pred cEEEEEEe---CCcHH--HHHHHHHHHcCCCCEEEEEEeCCcchHHHHHHHHcCCCEEEeCccccCchhHhHHHHHHHHH
Confidence 45554422 23444 4445555544 4689988886555443 34566899999986421 1 2334
Q ss_pred hcCccEEEEC
Q 004942 309 SMKADLVIAG 318 (722)
Q Consensus 309 ~~k~DlVia~ 318 (722)
+.+||+|++-
T Consensus 81 ~~~~Dliv~a 90 (215)
T 3tqr_A 81 HYDPKLIVLA 90 (215)
T ss_dssp TTCCSEEEES
T ss_pred hcCCCEEEEc
Confidence 7899999554
No 125
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=37.64 E-value=1.8e+02 Score=24.28 Aligned_cols=84 Identities=17% Similarity=0.101 Sum_probs=54.8
Q ss_pred EEeCCchhhHHHHHHH--cCEEEEcCCCCCCCccHHHHHHHHh-----CCCEEEc-CCC--ChhhhhccCccEEEECCCC
Q 004942 608 MLWTPATTRVASLYSA--ADVYVINSQGLGETFGRVTIEAMAF-----GVPVLGT-DAG--GTKEIVEHNVTGLLHPPGH 677 (722)
Q Consensus 608 V~f~G~~~dv~~lysa--ADv~V~pS~~l~EgfglviLEAMA~-----GlPVVaT-d~G--G~~EIVe~g~tGlLvp~~d 677 (722)
|.......+....+.. .|++++-.. +.+.-|..+++.+.. .+|||.. ... ...+.+..|..+++..|-+
T Consensus 30 v~~~~~~~~a~~~l~~~~~dlvi~d~~-l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~g~~~~l~KP~~ 108 (133)
T 3nhm_A 30 CTTAADGASGLQQALAHPPDVLISDVN-MDGMDGYALCGHFRSEPTLKHIPVIFVSGYAPRTEGPADQPVPDAYLVKPVK 108 (133)
T ss_dssp EEEESSHHHHHHHHHHSCCSEEEECSS-CSSSCHHHHHHHHHHSTTTTTCCEEEEESCCC-----TTSCCCSEEEESSCC
T ss_pred EEEECCHHHHHHHHhcCCCCEEEEeCC-CCCCCHHHHHHHHHhCCccCCCCEEEEeCCCcHhHHHHhhcCCceEEeccCC
Confidence 4444444444444443 488888765 456667778877754 6788763 322 2244566788899999988
Q ss_pred ccHHHHHHHHHHhhcCH
Q 004942 678 PGAQVLAQNLRYLLKNP 694 (722)
Q Consensus 678 ~~~e~LA~aI~~LL~np 694 (722)
+ +.|.+.|..+++..
T Consensus 109 ~--~~l~~~i~~~l~~~ 123 (133)
T 3nhm_A 109 P--PVLIAQLHALLARA 123 (133)
T ss_dssp H--HHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHhhh
Confidence 8 99999999988643
No 126
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=37.37 E-value=55 Score=36.06 Aligned_cols=70 Identities=19% Similarity=0.300 Sum_probs=46.3
Q ss_pred cEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCccchhhhcCccEEEECCchh
Q 004942 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPSFKTSMKADLVIAGSAVC 322 (722)
Q Consensus 243 kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~~~~~~~k~DlVia~Sav~ 322 (722)
++|.+| ..||+.++. +|+.|.++|++|++.=. ........|...||++..- .... .-..+|+|+...++.
T Consensus 23 ~~v~vi----GiG~sG~s~--~A~~l~~~G~~V~~~D~-~~~~~~~~l~~~gi~~~~g-~~~~--~~~~~d~vV~Spgi~ 92 (494)
T 4hv4_A 23 RHIHFV----GIGGAGMGG--IAEVLANEGYQISGSDL-APNSVTQHLTALGAQIYFH-HRPE--NVLDASVVVVSTAIS 92 (494)
T ss_dssp CEEEEE----TTTSTTHHH--HHHHHHHTTCEEEEECS-SCCHHHHHHHHTTCEEESS-CCGG--GGTTCSEEEECTTSC
T ss_pred CEEEEE----EEcHhhHHH--HHHHHHhCCCeEEEEEC-CCCHHHHHHHHCCCEEECC-CCHH--HcCCCCEEEECCCCC
Confidence 455544 567776654 68999999999987642 2233456688899998742 2222 123689999987764
No 127
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=37.28 E-value=2.1e+02 Score=24.96 Aligned_cols=82 Identities=17% Similarity=0.176 Sum_probs=55.0
Q ss_pred EEeCCchhhHHHHHHH--cCEEEEcCCCCCCCccHHHHHHHH-----hCCCEEE-cCCCCh---hhhhccCccEEEECCC
Q 004942 608 MLWTPATTRVASLYSA--ADVYVINSQGLGETFGRVTIEAMA-----FGVPVLG-TDAGGT---KEIVEHNVTGLLHPPG 676 (722)
Q Consensus 608 V~f~G~~~dv~~lysa--ADv~V~pS~~l~EgfglviLEAMA-----~GlPVVa-Td~GG~---~EIVe~g~tGlLvp~~ 676 (722)
|.......+....+.. .|++++-.. +...-|..+++.+. ..+|||. |..... .+.+..|..+++..|-
T Consensus 34 v~~~~~~~~al~~l~~~~~dlii~D~~-l~~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~ 112 (154)
T 3gt7_A 34 TEHVRNGREAVRFLSLTRPDLIISDVL-MPEMDGYALCRWLKGQPDLRTIPVILLTILSDPRDVVRSLECGADDFITKPC 112 (154)
T ss_dssp EEEESSHHHHHHHHTTCCCSEEEEESC-CSSSCHHHHHHHHHHSTTTTTSCEEEEECCCSHHHHHHHHHHCCSEEEESSC
T ss_pred EEEeCCHHHHHHHHHhCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCcCCCCEEEEECCCChHHHHHHHHCCCCEEEeCCC
Confidence 4444433444444443 488888765 45566777888775 3678876 433333 3345678899999998
Q ss_pred CccHHHHHHHHHHhhc
Q 004942 677 HPGAQVLAQNLRYLLK 692 (722)
Q Consensus 677 d~~~e~LA~aI~~LL~ 692 (722)
+. +.|.+.|..+++
T Consensus 113 ~~--~~l~~~i~~~l~ 126 (154)
T 3gt7_A 113 KD--VVLASHVKRLLS 126 (154)
T ss_dssp CH--HHHHHHHHHHHH
T ss_pred CH--HHHHHHHHHHHH
Confidence 88 999999998875
No 128
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=37.23 E-value=2e+02 Score=24.82 Aligned_cols=87 Identities=10% Similarity=0.097 Sum_probs=54.7
Q ss_pred cEEeCCchhhHHHHHHH--cCEEEEcCCCCCCCccHHHHHHHH---hCCCEEEc-CCCCh---hhhhccC-ccEEEECCC
Q 004942 607 AMLWTPATTRVASLYSA--ADVYVINSQGLGETFGRVTIEAMA---FGVPVLGT-DAGGT---KEIVEHN-VTGLLHPPG 676 (722)
Q Consensus 607 ~V~f~G~~~dv~~lysa--ADv~V~pS~~l~EgfglviLEAMA---~GlPVVaT-d~GG~---~EIVe~g-~tGlLvp~~ 676 (722)
.|.......+...++.. .|++++-.. +.+.-|..+++.+. ..+|||.- ..... .+.+..| ..+++..|-
T Consensus 33 ~v~~~~~~~~a~~~l~~~~~dlvi~d~~-l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~~l~kP~ 111 (154)
T 2rjn_A 33 NIITFTSPLDALEALKGTSVQLVISDMR-MPEMGGEVFLEQVAKSYPDIERVVISGYADAQATIDAVNRGKISRFLLKPW 111 (154)
T ss_dssp EEEEESCHHHHHHHHTTSCCSEEEEESS-CSSSCHHHHHHHHHHHCTTSEEEEEECGGGHHHHHHHHHTTCCSEEEESSC
T ss_pred eEEEeCCHHHHHHHHhcCCCCEEEEecC-CCCCCHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHhccchheeeeCCC
Confidence 34444444444455543 488888765 34455666666663 36787764 33332 2344455 789999988
Q ss_pred CccHHHHHHHHHHhhcCHHH
Q 004942 677 HPGAQVLAQNLRYLLKNPSV 696 (722)
Q Consensus 677 d~~~e~LA~aI~~LL~np~~ 696 (722)
+. +.|.+.|..++.....
T Consensus 112 ~~--~~L~~~i~~~~~~~~~ 129 (154)
T 2rjn_A 112 ED--EDVFKVVEKGLQLAFL 129 (154)
T ss_dssp CH--HHHHHHHHHHHHHHHH
T ss_pred CH--HHHHHHHHHHHHHHHH
Confidence 87 9999999998865443
No 129
>1xv5_A AGT, DNA alpha-glucosyltransferase; HET: DNA CME UDP; 1.73A {Enterobacteria phage T4} PDB: 1y6f_A* 1y6g_A* 1ya6_A* 1y8z_A*
Probab=36.97 E-value=57 Score=33.28 Aligned_cols=93 Identities=13% Similarity=0.118 Sum_probs=61.6
Q ss_pred hhHHHHHHHcCEEEEcCCCCC-----CCccHHHHHHHHhCC-CEEEcCCCChh-------hhhccCccEEEECCCCccHH
Q 004942 615 TRVASLYSAADVYVINSQGLG-----ETFGRVTIEAMAFGV-PVLGTDAGGTK-------EIVEHNVTGLLHPPGHPGAQ 681 (722)
Q Consensus 615 ~dv~~lysaADv~V~pS~~l~-----EgfglviLEAMA~Gl-PVVaTd~GG~~-------EIVe~g~tGlLvp~~d~~~e 681 (722)
.++-+-++.+..--.-|. +. -..--+-+|-.|||+ ||.--..|..- -+-.|...-+.++..|- +
T Consensus 279 semlermsksgfgyqlsk-lnqkylqrsleythlelgacgtipvfwkstgenlkfrvdntpltshdsgiiwfdendm--e 355 (401)
T 1xv5_A 279 SEMLERMSKSGFGYQLSK-LNQKYLQRSLEYTHLELGACGTIPVFWKSTGENLKFRVDNTPLTSHDSGIIWFDENDM--E 355 (401)
T ss_dssp HHHHHHHHTEEEEEECCC-CCGGGCSSCCCHHHHHHHHHTSEEEEEHHHHHHSBCTTTCCBGGGSCCSCEEECTTCH--H
T ss_pred HHHHHHhhhcCcccchHH-HHHHHHHhhhhhheeecccccceeeeecccCcceEEEecCCcccccCCceEEecCCch--H
Confidence 566677777777555554 22 345668899999998 66553222111 12233322356777776 8
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHh
Q 004942 682 VLAQNLRYLLKNPSVRERMAMEGRKKSNG 710 (722)
Q Consensus 682 ~LA~aI~~LL~np~~r~~mg~~grk~ve~ 710 (722)
.-.+.|..|-.|..++.+-++.+++...+
T Consensus 356 stferikelssdralydrerekayeflyq 384 (401)
T 1xv5_A 356 STFERIKELSSDRALYDREREKAYEFLYQ 384 (401)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccchhhhhHHHHHHHHHHHh
Confidence 88899999999999988888888887754
No 130
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=36.53 E-value=1.9e+02 Score=24.38 Aligned_cols=82 Identities=11% Similarity=0.086 Sum_probs=54.3
Q ss_pred cEEeCCchhhHHHHHHH--------cCEEEEcCCCCCCCccHHHHHHHH-----hCCCEEE-cCCCCh---hhhhccCcc
Q 004942 607 AMLWTPATTRVASLYSA--------ADVYVINSQGLGETFGRVTIEAMA-----FGVPVLG-TDAGGT---KEIVEHNVT 669 (722)
Q Consensus 607 ~V~f~G~~~dv~~lysa--------ADv~V~pS~~l~EgfglviLEAMA-----~GlPVVa-Td~GG~---~EIVe~g~t 669 (722)
.|.......+...++.. .|++++-.. +.+.-|.-+++.+. ..+|+|. +..... .+.+..|..
T Consensus 35 ~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~-l~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~ 113 (143)
T 2qvg_A 35 KIEIAKSGNQALDMLYGRNKENKIHPKLILLDIN-IPKMNGIEFLKELRDDSSFTDIEVFVLTAAYTSKDKLAFESLNIR 113 (143)
T ss_dssp CEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETT-CTTSCHHHHHHHHTTSGGGTTCEEEEEESCCCHHHHHHHTTTTCC
T ss_pred eEEEECCHHHHHHHHHhcccccCCCCCEEEEecC-CCCCCHHHHHHHHHcCccccCCcEEEEeCCCCHHHHHHHHhcCCC
Confidence 46655555555566653 689888765 34555677777774 4678766 443332 344567889
Q ss_pred EEEECCCCccHHHHHHHHHHhh
Q 004942 670 GLLHPPGHPGAQVLAQNLRYLL 691 (722)
Q Consensus 670 GlLvp~~d~~~e~LA~aI~~LL 691 (722)
+++..|-+. ++|.+++....
T Consensus 114 ~~l~kP~~~--~~L~~~~~~~~ 133 (143)
T 2qvg_A 114 GHLIKPLDY--GEAIKLFWILQ 133 (143)
T ss_dssp EEEESSCCH--HHHHHHHHHHH
T ss_pred eEEECCCCH--HHHHHHHHHHH
Confidence 999999888 88888866543
No 131
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=36.49 E-value=1.8e+02 Score=25.11 Aligned_cols=84 Identities=13% Similarity=0.194 Sum_probs=52.1
Q ss_pred cEEeCCchhhHHHHHHH---cCEEEEcCCCCCCCccHHHHHHHH---hCCCEEEcC-CCC---hhhhhccCccEEEECCC
Q 004942 607 AMLWTPATTRVASLYSA---ADVYVINSQGLGETFGRVTIEAMA---FGVPVLGTD-AGG---TKEIVEHNVTGLLHPPG 676 (722)
Q Consensus 607 ~V~f~G~~~dv~~lysa---ADv~V~pS~~l~EgfglviLEAMA---~GlPVVaTd-~GG---~~EIVe~g~tGlLvp~~ 676 (722)
.|.......+...++.. .|++++-.. +.+.-|.-+++.+. ..+|||.-- ... ..+.+..|..|++..|-
T Consensus 31 ~v~~~~~~~~a~~~l~~~~~~dlvi~d~~-l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~ 109 (154)
T 2qsj_A 31 RVEGAETVSDALAFLEADNTVDLILLDVN-LPDAEAIDGLVRLKRFDPSNAVALISGETDHELIRAALEAGADGFIPKSA 109 (154)
T ss_dssp EEEEESSHHHHHHHHHTTCCCSEEEECC-------CHHHHHHHHHHCTTSEEEEC-----CHHHHHHHHTTCCBBCCTTS
T ss_pred EEEEecCHHHHHHHHhccCCCCEEEEeCC-CCCCchHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHccCCEEEeCCC
Confidence 34444444555566655 588888765 34445666666664 367887743 222 23455678889999888
Q ss_pred CccHHHHHHHHHHhhcC
Q 004942 677 HPGAQVLAQNLRYLLKN 693 (722)
Q Consensus 677 d~~~e~LA~aI~~LL~n 693 (722)
+. +.|.+.|..++..
T Consensus 110 ~~--~~L~~~l~~~~~~ 124 (154)
T 2qsj_A 110 DP--QVLIHAVSLILEG 124 (154)
T ss_dssp CH--HHHHHHHHHHHTT
T ss_pred CH--HHHHHHHHHHHcC
Confidence 87 9999999998873
No 132
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=36.47 E-value=1e+02 Score=27.83 Aligned_cols=89 Identities=15% Similarity=0.178 Sum_probs=45.7
Q ss_pred ccCCCchhhhhccccEEEEEeCCCCCCcHHHHHHHHHHHHHh-CCCEEEEEEEcCCCC----------------ChhHHH
Q 004942 229 TCDRKGDFARFVWSRKFILIFHELSMTGAPLSMMELATELLS-CGATVSAVVLSKRGG----------------LMPELA 291 (722)
Q Consensus 229 ~~~~~~~f~~~~~~kkillI~hels~gGaplsm~eLA~eL~s-~G~~VsvV~ls~~g~----------------l~~el~ 291 (722)
+|++......-|+-++|++.+.. .+.....+++.|..|.+ .|.++.++....... ....+.
T Consensus 11 ~~~~~~~~~~~mm~~~ILv~vD~--~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~l~~~~~~~~ 88 (155)
T 3dlo_A 11 SSGRENLYFQGMIYMPIVVAVDK--KSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGRTKDEDIIEAKETLSWAVSIIR 88 (155)
T ss_dssp -----------CCCCCEEEECCS--SSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCcccccccCeEEEEECC--CCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 46655555556888999988763 12333446666666665 488888887544321 112234
Q ss_pred hCCcEEE----EcCCcc-----chhhhcCccEEEECC
Q 004942 292 RRKIKVL----EDRGEP-----SFKTSMKADLVIAGS 319 (722)
Q Consensus 292 ~~gI~Vl----~~~~~~-----~~~~~~k~DlVia~S 319 (722)
..|+++- ...+.. .+.++.++|+|+.++
T Consensus 89 ~~g~~~~~~~~v~~G~~~~~I~~~a~~~~~DLIV~G~ 125 (155)
T 3dlo_A 89 KEGAEGEEHLLVRGKEPPDDIVDFADEVDAIAIVIGI 125 (155)
T ss_dssp HTTCCEEEEEEESSSCHHHHHHHHHHHTTCSEEEEEC
T ss_pred hcCCCceEEEEecCCCHHHHHHHHHHHcCCCEEEECC
Confidence 5666542 222332 444477999998875
No 133
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=36.10 E-value=46 Score=33.25 Aligned_cols=58 Identities=19% Similarity=0.157 Sum_probs=35.7
Q ss_pred HHHHHHHHHHh-CCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCc---------c---chhhhcCccEEEE
Q 004942 260 SMMELATELLS-CGATVSAVVLSKRGGLMPELARRKIKVLEDRGE---------P---SFKTSMKADLVIA 317 (722)
Q Consensus 260 sm~eLA~eL~s-~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~---------~---~~~~~~k~DlVia 317 (722)
.+..|..++.+ .+++|.+|...++..-.+...+.||+++..+.. . ....+.+||++++
T Consensus 25 nl~all~~~~~~~~~eI~~Vis~~~a~~~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dlivl 95 (215)
T 3da8_A 25 LLRSLLDAAVGDYPARVVAVGVDRECRAAEIAAEASVPVFTVRLADHPSRDAWDVAITAATAAHEPDLVVS 95 (215)
T ss_dssp HHHHHHHHSSTTCSEEEEEEEESSCCHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHHhccCCCeEEEEEeCCchHHHHHHHHcCCCEEEeCcccccchhhhhHHHHHHHHhhCCCEEEE
Confidence 34445555533 456888887555433334566899999987431 1 2334789999944
No 134
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=35.97 E-value=64 Score=33.34 Aligned_cols=39 Identities=15% Similarity=0.243 Sum_probs=28.8
Q ss_pred cccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCC
Q 004942 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGL 286 (722)
Q Consensus 241 ~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l 286 (722)
..+++|+| |+..+....|+.|.+.|++|+||......++
T Consensus 12 ~~k~VLVV-------GgG~va~rka~~Ll~~Ga~VtViap~~~~~l 50 (274)
T 1kyq_A 12 KDKRILLI-------GGGEVGLTRLYKLMPTGCKLTLVSPDLHKSI 50 (274)
T ss_dssp TTCEEEEE-------EESHHHHHHHHHHGGGTCEEEEEEEEECTTH
T ss_pred CCCEEEEE-------CCcHHHHHHHHHHHhCCCEEEEEcCCCCcch
Confidence 44677766 4445778889999999999999986554333
No 135
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Probab=35.23 E-value=35 Score=34.01 Aligned_cols=79 Identities=13% Similarity=0.115 Sum_probs=40.7
Q ss_pred hhhccccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCC----ChhHHHhCCcEEEEcCCcc-------c
Q 004942 237 ARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG----LMPELARRKIKVLEDRGEP-------S 305 (722)
Q Consensus 237 ~~~~~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~----l~~el~~~gI~Vl~~~~~~-------~ 305 (722)
...|...|+++|+- |+.-.=..+|+.|.+.|++|.++. ..... +..++...+.++.....+. .
T Consensus 21 ~~m~~~~k~~lVTG-----as~GIG~aia~~la~~G~~Vv~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~ 94 (267)
T 3u5t_A 21 QSMMETNKVAIVTG-----ASRGIGAAIAARLASDGFTVVINY-AGKAAAAEEVAGKIEAAGGKALTAQADVSDPAAVRR 94 (267)
T ss_dssp ------CCEEEEES-----CSSHHHHHHHHHHHHHTCEEEEEE-SSCSHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred cccccCCCEEEEeC-----CCCHHHHHHHHHHHHCCCEEEEEc-CCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHH
Confidence 33444557777764 222233467889999999998875 22222 2223344444444333332 1
Q ss_pred hhh-----hcCccEEEECCch
Q 004942 306 FKT-----SMKADLVIAGSAV 321 (722)
Q Consensus 306 ~~~-----~~k~DlVia~Sav 321 (722)
+.. .-++|++|.+..+
T Consensus 95 ~~~~~~~~~g~iD~lvnnAG~ 115 (267)
T 3u5t_A 95 LFATAEEAFGGVDVLVNNAGI 115 (267)
T ss_dssp HHHHHHHHHSCEEEEEECCCC
T ss_pred HHHHHHHHcCCCCEEEECCCC
Confidence 111 1379999888654
No 136
>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*
Probab=35.19 E-value=88 Score=31.46 Aligned_cols=67 Identities=15% Similarity=0.021 Sum_probs=38.8
Q ss_pred CcHHHHHHHHHHHHHhCCCEEEEEEEcCCC------C--ChhHHH---hCCcEEEEcCCcc--chhh---hcCccEEEEC
Q 004942 255 TGAPLSMMELATELLSCGATVSAVVLSKRG------G--LMPELA---RRKIKVLEDRGEP--SFKT---SMKADLVIAG 318 (722)
Q Consensus 255 gGaplsm~eLA~eL~s~G~~VsvV~ls~~g------~--l~~el~---~~gI~Vl~~~~~~--~~~~---~~k~DlVia~ 318 (722)
||+...=..|++.|.+.|++|.++.-.... . ...++. ..++.++..+... .+.. ..++|+||..
T Consensus 9 GatG~iG~~l~~~L~~~g~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~d~vih~ 88 (348)
T 1ek6_A 9 GGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKYSFMAVIHF 88 (348)
T ss_dssp TTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHCCEEEEEEC
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEecCCcccccccccHHHHHHHHhccCCceEEEECCCCCHHHHHHHHHhcCCCEEEEC
Confidence 344444566888999999999988632221 1 112222 2467777654432 2332 3379999877
Q ss_pred Cch
Q 004942 319 SAV 321 (722)
Q Consensus 319 Sav 321 (722)
.+.
T Consensus 89 A~~ 91 (348)
T 1ek6_A 89 AGL 91 (348)
T ss_dssp CSC
T ss_pred CCC
Confidence 654
No 137
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=35.06 E-value=74 Score=31.92 Aligned_cols=65 Identities=17% Similarity=0.051 Sum_probs=37.3
Q ss_pred cHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChh---HHH---hCCcEEEEcCCcc--chh---hhcCccEEEECCch
Q 004942 256 GAPLSMMELATELLSCGATVSAVVLSKRGGLMP---ELA---RRKIKVLEDRGEP--SFK---TSMKADLVIAGSAV 321 (722)
Q Consensus 256 Gaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~---el~---~~gI~Vl~~~~~~--~~~---~~~k~DlVia~Sav 321 (722)
|+...=..|++.|.+.|++|.++.-... .... .+. ..++.++..+... .+. ...++|+|+.+.+.
T Consensus 13 atG~iG~~l~~~L~~~G~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~ 88 (341)
T 3enk_A 13 GAGYIGSHTAVELLAHGYDVVIADNLVN-SKREAIARIEKITGKTPAFHETDVSDERALARIFDAHPITAAIHFAAL 88 (341)
T ss_dssp TTSHHHHHHHHHHHHTTCEEEEECCCSS-SCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHSCCCEEEECCCC
T ss_pred CCcHHHHHHHHHHHHCCCcEEEEecCCc-chHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhccCCcEEEECccc
Confidence 3344445688899999999988763222 2221 121 2366666544322 222 24489999877654
No 138
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*
Probab=34.83 E-value=43 Score=32.63 Aligned_cols=74 Identities=11% Similarity=0.119 Sum_probs=40.9
Q ss_pred cEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCC---ChhHHHhCCcEEEEcCCcc-------chhh----
Q 004942 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG---LMPELARRKIKVLEDRGEP-------SFKT---- 308 (722)
Q Consensus 243 kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~---l~~el~~~gI~Vl~~~~~~-------~~~~---- 308 (722)
.|.++|+ ||+.-.=..+|+.|.+.|++|.++....... +..++...+.++.....+. .+..
T Consensus 4 ~k~~lVT-----Gas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 78 (246)
T 3osu_A 4 TKSALVT-----GASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVS 78 (246)
T ss_dssp SCEEEET-----TCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEE-----CCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 4556664 3333334568899999999998876221111 2234445555544333332 1111
Q ss_pred -hcCccEEEECCch
Q 004942 309 -SMKADLVIAGSAV 321 (722)
Q Consensus 309 -~~k~DlVia~Sav 321 (722)
.-++|+++.+..+
T Consensus 79 ~~g~id~lv~nAg~ 92 (246)
T 3osu_A 79 QFGSLDVLVNNAGI 92 (246)
T ss_dssp HHSCCCEEEECCCC
T ss_pred HcCCCCEEEECCCC
Confidence 1389999888654
No 139
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=34.82 E-value=2e+02 Score=23.95 Aligned_cols=83 Identities=14% Similarity=0.143 Sum_probs=49.4
Q ss_pred EEeCCchhhHHHHHHH--cCEEEEcCCCCCCCccHHHHHHHHh---CCCEEE-cCCCCh---hhhhccCccEEEECCC-C
Q 004942 608 MLWTPATTRVASLYSA--ADVYVINSQGLGETFGRVTIEAMAF---GVPVLG-TDAGGT---KEIVEHNVTGLLHPPG-H 677 (722)
Q Consensus 608 V~f~G~~~dv~~lysa--ADv~V~pS~~l~EgfglviLEAMA~---GlPVVa-Td~GG~---~EIVe~g~tGlLvp~~-d 677 (722)
+.......+....+.. .|++++-.. +.+.-|..+++.+.. .+|+|. |..... .+.+..|..+++..|- +
T Consensus 34 v~~~~~~~~a~~~l~~~~~dlvi~d~~-l~~~~g~~~~~~l~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~ 112 (130)
T 3eod_A 34 TVLAADGVDALELLGGFTPDLMICDIA-MPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKD 112 (130)
T ss_dssp EEEESCHHHHHHHHTTCCCSEEEECCC------CHHHHHHHHHTTCCCCEEEEECCCCHHHHHHHHHHCCSEEEESCC--
T ss_pred EEEeCCHHHHHHHHhcCCCCEEEEecC-CCCCCHHHHHHHHHhcCCCCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCc
Confidence 4443333444444443 488888765 355567777777643 577766 443333 3456678899999887 7
Q ss_pred ccHHHHHHHHHHhhcC
Q 004942 678 PGAQVLAQNLRYLLKN 693 (722)
Q Consensus 678 ~~~e~LA~aI~~LL~n 693 (722)
. +.|.+.+..++..
T Consensus 113 ~--~~l~~~i~~~l~~ 126 (130)
T 3eod_A 113 L--NRLREMVFACLYP 126 (130)
T ss_dssp ---CHHHHHHHHHHC-
T ss_pred H--HHHHHHHHHHhch
Confidence 6 8999999988764
No 140
>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*
Probab=34.18 E-value=1.1e+02 Score=30.91 Aligned_cols=65 Identities=14% Similarity=0.042 Sum_probs=37.9
Q ss_pred CcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHH----hCCcEEEEcCCcc--chhh---hcCccEEEECCc
Q 004942 255 TGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELA----RRKIKVLEDRGEP--SFKT---SMKADLVIAGSA 320 (722)
Q Consensus 255 gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~----~~gI~Vl~~~~~~--~~~~---~~k~DlVia~Sa 320 (722)
||+...=..|++.|.+.|++|.+++-.. ........ ..++.++..+... .+.. ..++|+||...+
T Consensus 16 GatG~iG~~l~~~L~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~ 89 (357)
T 1rkx_A 16 GHTGFKGGWLSLWLQTMGATVKGYSLTA-PTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVFHMAA 89 (357)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESSC-SSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEEECCS
T ss_pred CCCchHHHHHHHHHHhCCCeEEEEeCCC-cccchhhHhhccCCceEEEEccccCHHHHHHHHHhcCCCEEEECCC
Confidence 3444455667889999999998887332 22211111 2467777654332 2222 336899987755
No 141
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=34.18 E-value=2.2e+02 Score=24.25 Aligned_cols=83 Identities=19% Similarity=0.170 Sum_probs=55.1
Q ss_pred EEeCCchhhHHHHHHH---cCEEEEcCCCCCC-CccHHHHHHHH--hCCCEEEc-CC---CChhhhhccCccEEEECCCC
Q 004942 608 MLWTPATTRVASLYSA---ADVYVINSQGLGE-TFGRVTIEAMA--FGVPVLGT-DA---GGTKEIVEHNVTGLLHPPGH 677 (722)
Q Consensus 608 V~f~G~~~dv~~lysa---ADv~V~pS~~l~E-gfglviLEAMA--~GlPVVaT-d~---GG~~EIVe~g~tGlLvp~~d 677 (722)
|.......+....+.. .|++++-.. +.+ .-|..+++.+. ..+|||.- .. ....+.+..|..+++..|-+
T Consensus 32 v~~~~~~~~a~~~l~~~~~~dlvi~D~~-l~~~~~g~~~~~~l~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~ 110 (140)
T 3h5i_A 32 VEIALTGEAAVEKVSGGWYPDLILMDIE-LGEGMDGVQTALAIQQISELPVVFLTAHTEPAVVEKIRSVTAYGYVMKSAT 110 (140)
T ss_dssp EEEESSHHHHHHHHHTTCCCSEEEEESS-CSSSCCHHHHHHHHHHHCCCCEEEEESSSSCCCCGGGGGSCEEEEEETTCC
T ss_pred EEEecChHHHHHHHhcCCCCCEEEEecc-CCCCCCHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHhCCCcEEEeCCCC
Confidence 4444444444455543 489888765 344 45666776664 47888763 32 23445677788999999988
Q ss_pred ccHHHHHHHHHHhhcC
Q 004942 678 PGAQVLAQNLRYLLKN 693 (722)
Q Consensus 678 ~~~e~LA~aI~~LL~n 693 (722)
. +.|.+.|..+++.
T Consensus 111 ~--~~l~~~i~~~l~~ 124 (140)
T 3h5i_A 111 E--QVLITIVEMALRL 124 (140)
T ss_dssp H--HHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHH
Confidence 7 9999999988763
No 142
>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*
Probab=33.90 E-value=84 Score=32.29 Aligned_cols=67 Identities=16% Similarity=0.045 Sum_probs=37.0
Q ss_pred CcHHHHHHHHHHHHHhCCCEEEEEEEcCCCC---ChhHHH------hC-CcEEEEcCCcc--chhh---hcCccEEEECC
Q 004942 255 TGAPLSMMELATELLSCGATVSAVVLSKRGG---LMPELA------RR-KIKVLEDRGEP--SFKT---SMKADLVIAGS 319 (722)
Q Consensus 255 gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~---l~~el~------~~-gI~Vl~~~~~~--~~~~---~~k~DlVia~S 319 (722)
||+...-..|++.|.+.|++|.+++-..... ....+. .. ++.++..+... .+.. ..++|+||...
T Consensus 35 GatG~IG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~Vih~A 114 (381)
T 1n7h_A 35 GITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKPDEVYNLA 114 (381)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred cCCchHHHHHHHHHHHCCCEEEEEecCCccccchhhhhhhhccccccccceEEEECCCCCHHHHHHHHHhcCCCEEEECC
Confidence 3444455668889999999999887332211 011111 11 56666544322 2222 33689998776
Q ss_pred ch
Q 004942 320 AV 321 (722)
Q Consensus 320 av 321 (722)
+.
T Consensus 115 ~~ 116 (381)
T 1n7h_A 115 AQ 116 (381)
T ss_dssp SC
T ss_pred cc
Confidence 54
No 143
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=33.55 E-value=2.1e+02 Score=23.86 Aligned_cols=82 Identities=16% Similarity=0.236 Sum_probs=54.7
Q ss_pred EEeCCchhhHHHHHHH--cCEEEEcCCCCCCCccHHHHHHHH-----hCCCEEE-cCCCChh---hhhccCccEEEECCC
Q 004942 608 MLWTPATTRVASLYSA--ADVYVINSQGLGETFGRVTIEAMA-----FGVPVLG-TDAGGTK---EIVEHNVTGLLHPPG 676 (722)
Q Consensus 608 V~f~G~~~dv~~lysa--ADv~V~pS~~l~EgfglviLEAMA-----~GlPVVa-Td~GG~~---EIVe~g~tGlLvp~~ 676 (722)
|.......+..+++.. .|++++-.. +.+.-|..+++.+. ..+|||. |..+... +.+..|..+++..|-
T Consensus 29 v~~~~~~~~al~~l~~~~~dlvllD~~-~p~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~ 107 (122)
T 3gl9_A 29 VIEAENGQIALEKLSEFTPDLIVLXIM-MPVMDGFTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPF 107 (122)
T ss_dssp EEEESSHHHHHHHHTTBCCSEEEECSC-CSSSCHHHHHHHHHTSTTTTTSCEEEEESCCSHHHHHHHHHTTCSEEEESSC
T ss_pred EEEeCCHHHHHHHHHhcCCCEEEEecc-CCCCcHHHHHHHHHhcccccCCCEEEEecCCchHHHHHHHhcChhhhccCCC
Confidence 4433333344444443 488888765 45666778888874 3578876 4444333 345678899999999
Q ss_pred CccHHHHHHHHHHhhc
Q 004942 677 HPGAQVLAQNLRYLLK 692 (722)
Q Consensus 677 d~~~e~LA~aI~~LL~ 692 (722)
++ +.|.+.|..+++
T Consensus 108 ~~--~~L~~~i~~~l~ 121 (122)
T 3gl9_A 108 SP--SQFIEEVKHLLN 121 (122)
T ss_dssp CH--HHHHHHHHHHHC
T ss_pred CH--HHHHHHHHHHhc
Confidence 98 999999988875
No 144
>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A
Probab=33.55 E-value=97 Score=30.59 Aligned_cols=63 Identities=17% Similarity=0.070 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhCC-CEEEEEEEcCCCCChhHHHhCCcEEEEcCCcc--chhh-hcCccEEEECCc
Q 004942 258 PLSMMELATELLSCG-ATVSAVVLSKRGGLMPELARRKIKVLEDRGEP--SFKT-SMKADLVIAGSA 320 (722)
Q Consensus 258 plsm~eLA~eL~s~G-~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~--~~~~-~~k~DlVia~Sa 320 (722)
...=..+++.|.+.| ++|.+++-.........+...++.++..+... .+.. -..+|.|+..+.
T Consensus 15 G~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~ 81 (299)
T 2wm3_A 15 GAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIVTN 81 (299)
T ss_dssp SHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred chHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEeCC
Confidence 334455778888888 99998872221111234556788888755432 3333 236899977654
No 145
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=33.50 E-value=32 Score=37.93 Aligned_cols=74 Identities=22% Similarity=0.164 Sum_probs=46.3
Q ss_pred hhccccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCcc--chhhhcCccEE
Q 004942 238 RFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP--SFKTSMKADLV 315 (722)
Q Consensus 238 ~~~~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~--~~~~~~k~DlV 315 (722)
.++..||+++.. .+.....|++.|.++|.+|..+..........+.... .++..+... .+..+.+||++
T Consensus 309 ~~l~Gkrv~i~~-------~~~~~~~l~~~L~elGm~vv~~~~~~~~~~~~~~~~~--~v~~~D~~~le~~i~~~~pDll 379 (458)
T 3pdi_B 309 FMLSSARTAIAA-------DPDLLLGFDALLRSMGAHTVAAVVPARAAALVDSPLP--SVRVGDLEDLEHAARAGQAQLV 379 (458)
T ss_dssp HHHTTCEEEEEC-------CHHHHHHHHHHHHTTTCEEEEEEESSCCSCCTTTTSS--CEEESHHHHHHHHHHHHTCSEE
T ss_pred HhcCCCEEEEEC-------CcHHHHHHHHHHHHCCCEEEEEEECCCChhhhhCccC--cEEeCCHHHHHHHHHhcCCCEE
Confidence 356778998752 3456778999999999999988865533221111111 233322111 44557899999
Q ss_pred EECCc
Q 004942 316 IAGSA 320 (722)
Q Consensus 316 ia~Sa 320 (722)
+.++.
T Consensus 380 ig~~~ 384 (458)
T 3pdi_B 380 IGNSH 384 (458)
T ss_dssp EECTT
T ss_pred EEChh
Confidence 88864
No 146
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=33.23 E-value=1.3e+02 Score=29.74 Aligned_cols=62 Identities=13% Similarity=-0.001 Sum_probs=37.1
Q ss_pred CcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCcc-chhh-hcCccEEEECCch
Q 004942 255 TGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP-SFKT-SMKADLVIAGSAV 321 (722)
Q Consensus 255 gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~-~~~~-~~k~DlVia~Sav 321 (722)
||+...=..|++.|.+.|++|.+++-. ..... +. ++.++..+... .+.. -.++|+||...+.
T Consensus 9 GatG~iG~~l~~~L~~~g~~V~~~~r~--~~~~~-~~--~~~~~~~Dl~~~~~~~~~~~~d~Vih~a~~ 72 (311)
T 3m2p_A 9 GGTGFLGQYVVESIKNDGNTPIILTRS--IGNKA-IN--DYEYRVSDYTLEDLINQLNDVDAVVHLAAT 72 (311)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESC--CC--------CCEEEECCCCHHHHHHHTTTCSEEEECCCC
T ss_pred CCCcHHHHHHHHHHHhCCCEEEEEeCC--CCccc-CC--ceEEEEccccHHHHHHhhcCCCEEEEcccc
Confidence 444555567888999999999988833 22222 33 77877655432 2222 2388999766543
No 147
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=33.23 E-value=62 Score=35.35 Aligned_cols=58 Identities=17% Similarity=0.165 Sum_probs=35.1
Q ss_pred cEEEEEeCCCCCCcHHHHHHHHHHHHHhC-CCEEEEEEEcCC--CCChhHHH---hCCcEEEEcCC
Q 004942 243 RKFILIFHELSMTGAPLSMMELATELLSC-GATVSAVVLSKR--GGLMPELA---RRKIKVLEDRG 302 (722)
Q Consensus 243 kkillI~hels~gGaplsm~eLA~eL~s~-G~~VsvV~ls~~--g~l~~el~---~~gI~Vl~~~~ 302 (722)
.+|+++.. ...|=-.-|++||++|.++ ||+|++++.... ......+. ..++.++.++.
T Consensus 7 ~~vl~~p~--p~~GHv~P~l~La~~L~~r~Gh~Vt~~t~~~~~~~~~~~~~~~~~~~~i~~~~l~~ 70 (480)
T 2vch_A 7 PHVAIIPS--PGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQRTVLDSLPSSISSVFLPP 70 (480)
T ss_dssp CEEEEECC--SCHHHHHHHHHHHHHHHHHHCCEEEEEECCSSSCC-CHHHHHC-CCTTEEEEECCC
T ss_pred cEEEEecC--cchhHHHHHHHHHHHHHhCCCCEEEEEECCCcchhhhhhhhccccCCCceEEEcCC
Confidence 35555432 2334445599999999998 999999985442 12222211 14777777653
No 148
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=32.79 E-value=1.7e+02 Score=24.75 Aligned_cols=67 Identities=13% Similarity=0.150 Sum_probs=45.0
Q ss_pred CEEEEcCCCCCCCccHHHHHHHH--h-----CCC-EE-EcCCCChh---hhhccCccEEEECCCCccHHHHHHHHHHhhc
Q 004942 625 DVYVINSQGLGETFGRVTIEAMA--F-----GVP-VL-GTDAGGTK---EIVEHNVTGLLHPPGHPGAQVLAQNLRYLLK 692 (722)
Q Consensus 625 Dv~V~pS~~l~EgfglviLEAMA--~-----GlP-VV-aTd~GG~~---EIVe~g~tGlLvp~~d~~~e~LA~aI~~LL~ 692 (722)
|++++-.. +...-|.-+++.+. . ..| +| .|...... +.+..|..|++..|-+. +.|.+.|..+++
T Consensus 52 dlvllD~~-lp~~~g~~~~~~l~~~~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~--~~L~~~l~~~~~ 128 (136)
T 1dcf_A 52 KVVFMDVC-MPGVENYQIALRIHEKFTKQRHQRPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSL--DNIRDVLSDLLE 128 (136)
T ss_dssp SEEEEECC-SSTTTTTHHHHHHHHHHC-CCSCCCEEEEEESCCSHHHHHHHHHTTCCEEEESSCCH--HHHHHHHHHHHS
T ss_pred CEEEEeCC-CCCCcHHHHHHHHHHhhhhccCCCceEEEEeCCCCHHHHHHHHHcCCCeEEECCCCH--HHHHHHHHHHhc
Confidence 88887654 34444566666664 1 244 54 45554433 34567889999999888 999999998876
Q ss_pred CH
Q 004942 693 NP 694 (722)
Q Consensus 693 np 694 (722)
..
T Consensus 129 ~~ 130 (136)
T 1dcf_A 129 PR 130 (136)
T ss_dssp CC
T ss_pred hh
Confidence 54
No 149
>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=32.49 E-value=1.1e+02 Score=29.03 Aligned_cols=60 Identities=18% Similarity=0.150 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhCC--CEEEEEEEcCCCCChhHHHhC---CcEEEEcCCcc--ch---hh----hc---CccEEEECCch
Q 004942 260 SMMELATELLSCG--ATVSAVVLSKRGGLMPELARR---KIKVLEDRGEP--SF---KT----SM---KADLVIAGSAV 321 (722)
Q Consensus 260 sm~eLA~eL~s~G--~~VsvV~ls~~g~l~~el~~~---gI~Vl~~~~~~--~~---~~----~~---k~DlVia~Sav 321 (722)
.=..+|+.|.+.| ++|.++. +...-.+++... ++.++..+... .+ .. .. ++|+||.+..+
T Consensus 15 iG~~la~~l~~~g~~~~V~~~~--r~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~~id~li~~Ag~ 91 (250)
T 1yo6_A 15 IGLGLVQQLVKDKNIRHIIATA--RDVEKATELKSIKDSRVHVLPLTVTCDKSLDTFVSKVGEIVGSDGLSLLINNAGV 91 (250)
T ss_dssp HHHHHHHHHHTCTTCCEEEEEE--SSGGGCHHHHTCCCTTEEEEECCTTCHHHHHHHHHHHHHHHGGGCCCEEEECCCC
T ss_pred HHHHHHHHHHhcCCCcEEEEEe--cCHHHHHHHHhccCCceEEEEeecCCHHHHHHHHHHHHHhcCCCCCcEEEECCcc
Confidence 3456888999999 9988876 322222344332 45555544322 11 11 11 79999877654
No 150
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*
Probab=32.03 E-value=47 Score=32.77 Aligned_cols=74 Identities=15% Similarity=0.091 Sum_probs=40.0
Q ss_pred cccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCC----ChhHHHhCCcEEEEcCCcc-------chhh-
Q 004942 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG----LMPELARRKIKVLEDRGEP-------SFKT- 308 (722)
Q Consensus 241 ~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~----l~~el~~~gI~Vl~~~~~~-------~~~~- 308 (722)
++.|.++|+- |+.-.=..+|+.|.+.|++|.++. .+... ...++...+.++.....+. .+..
T Consensus 2 ~~~k~vlVTG-----as~gIG~aia~~l~~~G~~vv~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 75 (258)
T 3oid_A 2 EQNKCALVTG-----SSRGVGKAAAIRLAENGYNIVINY-ARSKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQ 75 (258)
T ss_dssp -CCCEEEESS-----CSSHHHHHHHHHHHHTTCEEEEEE-SSCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEec-----CCchHHHHHHHHHHHCCCEEEEEc-CCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence 3456676753 333334467899999999998864 22221 2233344444443333332 1111
Q ss_pred ----hcCccEEEECCc
Q 004942 309 ----SMKADLVIAGSA 320 (722)
Q Consensus 309 ----~~k~DlVia~Sa 320 (722)
.-++|+++.+..
T Consensus 76 ~~~~~g~id~lv~nAg 91 (258)
T 3oid_A 76 IDETFGRLDVFVNNAA 91 (258)
T ss_dssp HHHHHSCCCEEEECCC
T ss_pred HHHHcCCCCEEEECCC
Confidence 237899988864
No 151
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}
Probab=31.86 E-value=39 Score=33.79 Aligned_cols=77 Identities=8% Similarity=-0.023 Sum_probs=39.5
Q ss_pred hhccccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCC----ChhHHHhCCcEE--EEcCCcc--c---h
Q 004942 238 RFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG----LMPELARRKIKV--LEDRGEP--S---F 306 (722)
Q Consensus 238 ~~~~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~----l~~el~~~gI~V--l~~~~~~--~---~ 306 (722)
..|...|+++|+- |+.-.=..+|+.|.+.|++|.++. +... ...++...+.++ +..+... . +
T Consensus 19 ~~m~~~k~~lVTG-----as~GIG~aia~~la~~G~~V~~~~--r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~ 91 (279)
T 3sju_A 19 SHMSRPQTAFVTG-----VSSGIGLAVARTLAARGIAVYGCA--RDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAA 91 (279)
T ss_dssp ------CEEEEES-----TTSHHHHHHHHHHHHTTCEEEEEE--SCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHH
T ss_pred ccccCCCEEEEeC-----CCCHHHHHHHHHHHHCCCEEEEEe--CCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHH
Confidence 3455567777764 222334567889999999988776 2221 223344444444 4333222 1 1
Q ss_pred hh-----hcCccEEEECCch
Q 004942 307 KT-----SMKADLVIAGSAV 321 (722)
Q Consensus 307 ~~-----~~k~DlVia~Sav 321 (722)
.. .-++|++|.+..+
T Consensus 92 ~~~~~~~~g~id~lv~nAg~ 111 (279)
T 3sju_A 92 VAAAVERFGPIGILVNSAGR 111 (279)
T ss_dssp HHHHHHHHCSCCEEEECCCC
T ss_pred HHHHHHHcCCCcEEEECCCC
Confidence 11 2378999887543
No 152
>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A
Probab=31.73 E-value=59 Score=31.71 Aligned_cols=62 Identities=15% Similarity=0.247 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCcc----chhh--------hcCccEEEECCch
Q 004942 260 SMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP----SFKT--------SMKADLVIAGSAV 321 (722)
Q Consensus 260 sm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~----~~~~--------~~k~DlVia~Sav 321 (722)
.=..+|+.|.+.|++|.++..........++...+.++.....+. .+.. .-++|+++.+..+
T Consensus 16 iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv~~Ag~ 89 (255)
T 2q2v_A 16 IGLGIAQVLARAGANIVLNGFGDPAPALAEIARHGVKAVHHPADLSDVAQIEALFALAEREFGGVDILVNNAGI 89 (255)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTSCCEEEECCCTTSHHHHHHHHHHHHHHHSSCSEEEECCCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 345688999999999887652221112233444454444333332 1211 1278999887543
No 153
>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2
Probab=31.23 E-value=98 Score=31.70 Aligned_cols=67 Identities=16% Similarity=0.016 Sum_probs=37.5
Q ss_pred CcHHHHHHHHHHHHHhCCCEEEEEEEcCCCC---ChhHH-------HhCCcEEEEcCCcc--chhh---hcCccEEEECC
Q 004942 255 TGAPLSMMELATELLSCGATVSAVVLSKRGG---LMPEL-------ARRKIKVLEDRGEP--SFKT---SMKADLVIAGS 319 (722)
Q Consensus 255 gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~---l~~el-------~~~gI~Vl~~~~~~--~~~~---~~k~DlVia~S 319 (722)
||+...-..|++.|.+.|++|.+++-..... ....+ ...++.++..+... .+.. ..++|+||.+.
T Consensus 31 GatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A 110 (375)
T 1t2a_A 31 GITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKPTEIYNLG 110 (375)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEECCccccchhhHHHHhhhhccccCCCceEEEccCCCHHHHHHHHHhcCCCEEEECC
Confidence 3444455668889999999999887332211 11222 12356666544322 2222 33689998776
Q ss_pred ch
Q 004942 320 AV 321 (722)
Q Consensus 320 av 321 (722)
+.
T Consensus 111 ~~ 112 (375)
T 1t2a_A 111 AQ 112 (375)
T ss_dssp SC
T ss_pred Cc
Confidence 54
No 154
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=30.75 E-value=2.4e+02 Score=23.64 Aligned_cols=85 Identities=9% Similarity=0.139 Sum_probs=54.7
Q ss_pred cEEeCCchhhHHHHHHH--cCEEEEcCCCCC-----CCccHHHHHHHH---hCCCEEEc-CCCC---hhhhhccCccEEE
Q 004942 607 AMLWTPATTRVASLYSA--ADVYVINSQGLG-----ETFGRVTIEAMA---FGVPVLGT-DAGG---TKEIVEHNVTGLL 672 (722)
Q Consensus 607 ~V~f~G~~~dv~~lysa--ADv~V~pS~~l~-----EgfglviLEAMA---~GlPVVaT-d~GG---~~EIVe~g~tGlL 672 (722)
.|.......+...++.. .|++++-.. +. +.-|..+++.+. ..+|||.- .... ..+.+..|..+++
T Consensus 29 ~v~~~~~~~~a~~~l~~~~~dlvi~d~~-~~~~~~~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l 107 (140)
T 2qr3_A 29 KVITLSSPVSLSTVLREENPEVVLLDMN-FTSGINNGNEGLFWLHEIKRQYRDLPVVLFTAYADIDLAVRGIKEGASDFV 107 (140)
T ss_dssp EEEEECCHHHHHHHHHHSCEEEEEEETT-TTC-----CCHHHHHHHHHHHCTTCCEEEEEEGGGHHHHHHHHHTTCCEEE
T ss_pred EEEEeCCHHHHHHHHHcCCCCEEEEeCC-cCCCCCCCccHHHHHHHHHhhCcCCCEEEEECCCCHHHHHHHHHcCchhee
Confidence 35444444455555554 488887664 33 445666666664 36888764 3222 2345567889999
Q ss_pred ECCCCccHHHHHHHHHHhhcCH
Q 004942 673 HPPGHPGAQVLAQNLRYLLKNP 694 (722)
Q Consensus 673 vp~~d~~~e~LA~aI~~LL~np 694 (722)
..|-+. +.|.+.|..+++..
T Consensus 108 ~kp~~~--~~l~~~l~~~~~~~ 127 (140)
T 2qr3_A 108 VKPWDN--QKLLETLLNAASQA 127 (140)
T ss_dssp EESCCH--HHHHHHHHHHHTCC
T ss_pred eCCCCH--HHHHHHHHHHHHhc
Confidence 998888 99999999988754
No 155
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=30.68 E-value=1.7e+02 Score=28.75 Aligned_cols=58 Identities=14% Similarity=0.052 Sum_probs=37.1
Q ss_pred HHHHHHHHHhC--CCEEEEEEEcCCCC-ChhHHHhCCcEEEEcCCc---------c---chhhhcCccEEEEC
Q 004942 261 MMELATELLSC--GATVSAVVLSKRGG-LMPELARRKIKVLEDRGE---------P---SFKTSMKADLVIAG 318 (722)
Q Consensus 261 m~eLA~eL~s~--G~~VsvV~ls~~g~-l~~el~~~gI~Vl~~~~~---------~---~~~~~~k~DlVia~ 318 (722)
+..|...+.+. +++|.+|...++.. ......+.||+++..... . ...++.+||+|++-
T Consensus 14 l~ali~~~~~~~~~~~i~~Vis~~~~~~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~a 86 (212)
T 1jkx_A 14 LQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQAGIATHTLIASAFDSREAYDRELIHEIDMYAPDVVVLA 86 (212)
T ss_dssp HHHHHHHHHTTSSSSEEEEEEESCTTCHHHHHHHHTTCEEEECCGGGCSSHHHHHHHHHHHHGGGCCSEEEES
T ss_pred HHHHHHHHHcCCCCceEEEEEeCCCchHHHHHHHHcCCcEEEeCcccccchhhccHHHHHHHHhcCCCEEEEe
Confidence 55566666554 58888887565433 334566899999985421 1 23347899999554
No 156
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=30.53 E-value=67 Score=30.09 Aligned_cols=64 Identities=16% Similarity=0.057 Sum_probs=40.6
Q ss_pred cHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCcc-chhhhcCccEEEECCch
Q 004942 256 GAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP-SFKTSMKADLVIAGSAV 321 (722)
Q Consensus 256 Gaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~-~~~~~~k~DlVia~Sav 321 (722)
|+...=..++++|.+.|++|.+++ +...-..++...++.++..+... ....-.++|+||.+...
T Consensus 8 atG~iG~~l~~~L~~~g~~V~~~~--R~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~ 72 (224)
T 3h2s_A 8 ATGRAGSAIVAEARRRGHEVLAVV--RDPQKAADRLGATVATLVKEPLVLTEADLDSVDAVVDALSV 72 (224)
T ss_dssp TTSHHHHHHHHHHHHTTCEEEEEE--SCHHHHHHHTCTTSEEEECCGGGCCHHHHTTCSEEEECCCC
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEE--ecccccccccCCCceEEecccccccHhhcccCCEEEECCcc
Confidence 334445668889999999999887 33322334445688888755432 12334578999777544
No 157
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=30.42 E-value=63 Score=28.44 Aligned_cols=59 Identities=20% Similarity=0.152 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCcc-chhh---hcCccEEEECCc
Q 004942 260 SMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP-SFKT---SMKADLVIAGSA 320 (722)
Q Consensus 260 sm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~-~~~~---~~k~DlVia~Sa 320 (722)
.-..+|+.|.+.|++|.++. ........+...++.++..+... .... ..++|+|++...
T Consensus 17 iG~~la~~L~~~g~~V~~id--~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~ 79 (141)
T 3llv_A 17 AGVGLVRELTAAGKKVLAVD--KSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGS 79 (141)
T ss_dssp HHHHHHHHHHHTTCCEEEEE--SCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCS
T ss_pred HHHHHHHHHHHCCCeEEEEE--CCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecC
Confidence 55678999999999998886 33344456667888887654432 2222 247899887654
No 158
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=30.35 E-value=1e+02 Score=30.47 Aligned_cols=57 Identities=14% Similarity=0.074 Sum_probs=35.4
Q ss_pred HHHHHHHHHhC--CCEEEEEEEcCCCCC-hhHHHhCCcEEEEcCCcc------------chhhhcCccEEEE
Q 004942 261 MMELATELLSC--GATVSAVVLSKRGGL-MPELARRKIKVLEDRGEP------------SFKTSMKADLVIA 317 (722)
Q Consensus 261 m~eLA~eL~s~--G~~VsvV~ls~~g~l-~~el~~~gI~Vl~~~~~~------------~~~~~~k~DlVia 317 (722)
+..|+..+.+. +++|.+|+..++... .....+.||+++...... ....+.+||+|++
T Consensus 14 L~aLi~~~~~~~~~~~I~~Vvs~~~~~~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~ 85 (209)
T 1meo_A 14 LQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLYKNRVEFDSAIDLVLEEFSIDIVCL 85 (209)
T ss_dssp HHHHHHHHHSTTCSCEEEEEEESSTTCHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHhcCCCCcEEEEEEeCCCChHHHHHHHHcCCCEEEECccccCchhhhhHHHHHHHHhcCCCEEEE
Confidence 44455555443 789988886654432 234568999998654321 2334789999944
No 159
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=30.24 E-value=2.4e+02 Score=23.49 Aligned_cols=67 Identities=9% Similarity=0.088 Sum_probs=49.0
Q ss_pred cCEEEEcCCCCCCCccHHHHHHHHh---CCCEEE-cCC---CChhhhhccCccEEEECCCCccHHHHHHHHHHhhcC
Q 004942 624 ADVYVINSQGLGETFGRVTIEAMAF---GVPVLG-TDA---GGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKN 693 (722)
Q Consensus 624 ADv~V~pS~~l~EgfglviLEAMA~---GlPVVa-Td~---GG~~EIVe~g~tGlLvp~~d~~~e~LA~aI~~LL~n 693 (722)
.|++++-.. +.+.-|..+++.+.. .+|||. |.. ....+.+..|..+++..|-+. +.|.++|..+++.
T Consensus 47 ~dlii~d~~-l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~--~~l~~~i~~~~~~ 120 (134)
T 3f6c_A 47 PDIVIIDVD-IPGVNGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGM--NNIIAAIEAAKNG 120 (134)
T ss_dssp CSEEEEETT-CSSSCHHHHHHHHHHTTCCSEEEEEECC---CTHHHHHHTTCSEEEEGGGCT--HHHHHHHHHHHTT
T ss_pred CCEEEEecC-CCCCChHHHHHHHHhcCCCCeEEEEeCCCChHHHHHHHHhCCCEEEeCCCCH--HHHHHHHHHHHCC
Confidence 488888775 456667777777653 567765 332 234556778899999999888 9999999998764
No 160
>2wqk_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus}
Probab=30.15 E-value=2.3e+02 Score=28.76 Aligned_cols=37 Identities=19% Similarity=0.229 Sum_probs=24.9
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCC
Q 004942 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRG 284 (722)
Q Consensus 244 killI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g 284 (722)
||| |+++-++.-.. +..|+++|.+.| +|.||++....
T Consensus 3 ~IL-lTNDDGi~apG--i~~L~~~l~~~g-~V~VvAP~~~~ 39 (251)
T 2wqk_A 3 TFL-LVNDDGYFSPG--INALREALKSLG-RVVVVAPDRNL 39 (251)
T ss_dssp EEE-EECSSCTTCHH--HHHHHHHHTTTS-EEEEEEESSCC
T ss_pred EEE-EEcCCCCCcHH--HHHHHHHHHhCC-CEEEEeeCCCC
Confidence 444 55555554333 445889999998 69999977643
No 161
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=30.12 E-value=2e+02 Score=26.22 Aligned_cols=68 Identities=12% Similarity=0.125 Sum_probs=45.4
Q ss_pred HcCEEEEcCCCCCCCccHHHHHHHH---hCCCEEE-cCCCCh---hhhhccCccEEEECCCCccHHHHHHHHHHhhcCH
Q 004942 623 AADVYVINSQGLGETFGRVTIEAMA---FGVPVLG-TDAGGT---KEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKNP 694 (722)
Q Consensus 623 aADv~V~pS~~l~EgfglviLEAMA---~GlPVVa-Td~GG~---~EIVe~g~tGlLvp~~d~~~e~LA~aI~~LL~np 694 (722)
..|++++-.. +.+.-|. +++.+. ..+|||. |..+.. .+.+..|..|++..|-+. +.|...|..++...
T Consensus 52 ~~dlvl~D~~-mp~~~g~-l~~~~~~~~~~~~ii~lt~~~~~~~~~~a~~~ga~~~l~KP~~~--~~L~~~l~~~~~~~ 126 (196)
T 1qo0_D 52 PVDVVFTSIF-QNRHHDE-IAALLAAGTPRTTLVALVEYESPAVLSQIIELECHGVITQPLDA--HRVLPVLVSARRIS 126 (196)
T ss_dssp CCSEEEEECC-SSTHHHH-HHHHHHHSCTTCEEEEEECCCSHHHHHHHHHHTCSEEEESSCCG--GGHHHHHHHHHHHH
T ss_pred CCCEEEEeCC-CCccchH-HHHHHhccCCCCCEEEEEcCCChHHHHHHHHcCCCeeEecCcCH--HHHHHHHHHHHHHH
Confidence 4688887664 2222244 666654 4678876 444433 334566889999999888 88998888877644
No 162
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Probab=30.03 E-value=92 Score=30.11 Aligned_cols=73 Identities=15% Similarity=0.129 Sum_probs=39.9
Q ss_pred cEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHh--CCcEEEEcCCcc--chhh--------hc
Q 004942 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELAR--RKIKVLEDRGEP--SFKT--------SM 310 (722)
Q Consensus 243 kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~--~gI~Vl~~~~~~--~~~~--------~~ 310 (722)
.+.++|+- |+.-.=..+|+.|.+.|++|.++.-. ...+...... ..+.++..+... .+.. .-
T Consensus 12 ~k~vlVTG-----asggiG~~~a~~l~~~G~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 85 (265)
T 2o23_A 12 GLVAVITG-----GASGLGLATAERLVGQGASAVLLDLP-NSGGEAQAKKLGNNCVFAPADVTSEKDVQTALALAKGKFG 85 (265)
T ss_dssp TCEEEEET-----TTSHHHHHHHHHHHHTTCEEEEEECT-TSSHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCEEEEEC-----CCChHHHHHHHHHHHCCCEEEEEeCC-cHhHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHCC
Confidence 34556653 33333456889999999999888732 2222222222 245555544332 2221 12
Q ss_pred CccEEEECCch
Q 004942 311 KADLVIAGSAV 321 (722)
Q Consensus 311 k~DlVia~Sav 321 (722)
++|++|.+..+
T Consensus 86 ~id~li~~Ag~ 96 (265)
T 2o23_A 86 RVDVAVNCAGI 96 (265)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCcc
Confidence 79999887643
No 163
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*
Probab=29.94 E-value=98 Score=29.14 Aligned_cols=62 Identities=15% Similarity=0.202 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHH-hCCCEEEEEEEcCCCC-ChhHH--HhCCcEEEEcCCcc--chhh-hcCccEEEECCch
Q 004942 258 PLSMMELATELL-SCGATVSAVVLSKRGG-LMPEL--ARRKIKVLEDRGEP--SFKT-SMKADLVIAGSAV 321 (722)
Q Consensus 258 plsm~eLA~eL~-s~G~~VsvV~ls~~g~-l~~el--~~~gI~Vl~~~~~~--~~~~-~~k~DlVia~Sav 321 (722)
.-.=..+++.|. +.|++|.+++ +... -.+++ ...++.++..+... .+.. -.++|+|+.+...
T Consensus 15 g~iG~~~~~~l~~~~g~~V~~~~--r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag~ 83 (221)
T 3r6d_A 15 GQIAQXLTATLLTYTDMHITLYG--RQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAME 83 (221)
T ss_dssp SHHHHHHHHHHHHHCCCEEEEEE--SSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCCC
T ss_pred cHHHHHHHHHHHhcCCceEEEEe--cCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCCC
Confidence 334456788888 8999998887 3322 22334 34566666544432 2332 2478999877543
No 164
>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}
Probab=29.18 E-value=77 Score=32.06 Aligned_cols=58 Identities=21% Similarity=0.250 Sum_probs=35.3
Q ss_pred HHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCccchhh-----hcCccEEEECCch
Q 004942 261 MMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPSFKT-----SMKADLVIAGSAV 321 (722)
Q Consensus 261 m~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~~~~~-----~~k~DlVia~Sav 321 (722)
=..+|+++...|++|+++.. +..+.+. ...++.++.......+.. .-+.|++|.+.++
T Consensus 32 G~aiA~~~~~~Ga~V~lv~~--~~~~~~~-~~~~~~~~~v~s~~em~~~v~~~~~~~Dili~aAAv 94 (232)
T 2gk4_A 32 GKIITETLLSAGYEVCLITT--KRALKPE-PHPNLSIREITNTKDLLIEMQERVQDYQVLIHSMAV 94 (232)
T ss_dssp HHHHHHHHHHTTCEEEEEEC--TTSCCCC-CCTTEEEEECCSHHHHHHHHHHHGGGCSEEEECSBC
T ss_pred HHHHHHHHHHCCCEEEEEeC--Ccccccc-CCCCeEEEEHhHHHHHHHHHHHhcCCCCEEEEcCcc
Confidence 34579999999999999983 2232211 023667766554332222 2368888777665
No 165
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=29.07 E-value=84 Score=30.94 Aligned_cols=77 Identities=10% Similarity=0.103 Sum_probs=41.9
Q ss_pred ccccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCC---hhHHHhC--CcEEEEcCCcc-----chhh-
Q 004942 240 VWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGL---MPELARR--KIKVLEDRGEP-----SFKT- 308 (722)
Q Consensus 240 ~~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l---~~el~~~--gI~Vl~~~~~~-----~~~~- 308 (722)
|...|+++|+- |+.-.=..+|+.|.+.|+.|.++........ ..++... .+.++..+... .+..
T Consensus 22 ~~~~k~vlITG-----as~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~ 96 (269)
T 3gk3_A 22 MQAKRVAFVTG-----GMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERDAGRDFKAYAVDVADFESCERCAEK 96 (269)
T ss_dssp --CCCEEEETT-----TTSHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHHHHTTTCCCEEEECCTTCHHHHHHHHHH
T ss_pred hhcCCEEEEEC-----CCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHH
Confidence 45567777743 3333345688999999999988762221111 1222222 35555544332 1111
Q ss_pred ----hcCccEEEECCch
Q 004942 309 ----SMKADLVIAGSAV 321 (722)
Q Consensus 309 ----~~k~DlVia~Sav 321 (722)
--++|++|.+..+
T Consensus 97 ~~~~~g~id~li~nAg~ 113 (269)
T 3gk3_A 97 VLADFGKVDVLINNAGI 113 (269)
T ss_dssp HHHHHSCCSEEEECCCC
T ss_pred HHHHcCCCCEEEECCCc
Confidence 1379999888654
No 166
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}
Probab=29.01 E-value=57 Score=32.56 Aligned_cols=73 Identities=21% Similarity=0.176 Sum_probs=40.9
Q ss_pred ccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCC----ChhHHHhCCcEEEEcCCcc-------chhh--
Q 004942 242 SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG----LMPELARRKIKVLEDRGEP-------SFKT-- 308 (722)
Q Consensus 242 ~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~----l~~el~~~gI~Vl~~~~~~-------~~~~-- 308 (722)
..|.++|+- |+.-.=..+|+.|.+.|++|.++. +... +..++...+.++.....+. .+..
T Consensus 3 ~~k~~lVTG-----as~GIG~aia~~la~~G~~V~~~~--r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 75 (264)
T 3tfo_A 3 MDKVILITG-----ASGGIGEGIARELGVAGAKILLGA--RRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAA 75 (264)
T ss_dssp TTCEEEESS-----TTSHHHHHHHHHHHHTTCEEEEEE--SSHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeC-----CccHHHHHHHHHHHHCCCEEEEEE--CCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 345666643 222234568899999999988776 3221 2234444555554433332 1111
Q ss_pred ---hcCccEEEECCch
Q 004942 309 ---SMKADLVIAGSAV 321 (722)
Q Consensus 309 ---~~k~DlVia~Sav 321 (722)
--++|++|.+..+
T Consensus 76 ~~~~g~iD~lVnnAG~ 91 (264)
T 3tfo_A 76 VDTWGRIDVLVNNAGV 91 (264)
T ss_dssp HHHHSCCCEEEECCCC
T ss_pred HHHcCCCCEEEECCCC
Confidence 2379999888643
No 167
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=29.01 E-value=2.5e+02 Score=23.24 Aligned_cols=85 Identities=13% Similarity=0.037 Sum_probs=54.1
Q ss_pred cEEeCCchhhHHHHHHH--cCEEEEcCCCCCCCccHHHHHHHHh-----CCCEEEc-CCCCh--hhhhccCccEEEECCC
Q 004942 607 AMLWTPATTRVASLYSA--ADVYVINSQGLGETFGRVTIEAMAF-----GVPVLGT-DAGGT--KEIVEHNVTGLLHPPG 676 (722)
Q Consensus 607 ~V~f~G~~~dv~~lysa--ADv~V~pS~~l~EgfglviLEAMA~-----GlPVVaT-d~GG~--~EIVe~g~tGlLvp~~ 676 (722)
.|.......+....+.. .|++++-.. +.+.-|..+++.+.. .+|||.. ..... .+.+..|..+++..|-
T Consensus 29 ~v~~~~~~~~a~~~l~~~~~dlii~D~~-l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~g~~~~l~KP~ 107 (127)
T 3i42_A 29 QADYVMSGTDALHAMSTRGYDAVFIDLN-LPDTSGLALVKQLRALPMEKTSKFVAVSGFAKNDLGKEACELFDFYLEKPI 107 (127)
T ss_dssp EEEEESSHHHHHHHHHHSCCSEEEEESB-CSSSBHHHHHHHHHHSCCSSCCEEEEEECC-CTTCCHHHHHHCSEEEESSC
T ss_pred CEEEECCHHHHHHHHHhcCCCEEEEeCC-CCCCCHHHHHHHHHhhhccCCCCEEEEECCcchhHHHHHHHhhHHheeCCC
Confidence 45444444454455543 488888765 456667778877753 4677763 32221 4556667889999998
Q ss_pred CccHHHHHHHHHHhhcCH
Q 004942 677 HPGAQVLAQNLRYLLKNP 694 (722)
Q Consensus 677 d~~~e~LA~aI~~LL~np 694 (722)
++ ++|.+.+......+
T Consensus 108 ~~--~~L~~~i~~~~~~~ 123 (127)
T 3i42_A 108 DI--ASLEPILQSIEGHH 123 (127)
T ss_dssp CH--HHHHHHHHHHC---
T ss_pred CH--HHHHHHHHHhhccC
Confidence 88 99999998876643
No 168
>1jx7_A Hypothetical protein YCHN; NEW fold, hexamer, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.80A {Escherichia coli} SCOP: c.114.1.1
Probab=28.71 E-value=1.1e+02 Score=26.00 Aligned_cols=39 Identities=13% Similarity=0.226 Sum_probs=28.3
Q ss_pred cEEEEEeCCCCCC-cHHHHHHHHHHHHHhC-CC-EEEEEEEc
Q 004942 243 RKFILIFHELSMT-GAPLSMMELATELLSC-GA-TVSAVVLS 281 (722)
Q Consensus 243 kkillI~hels~g-Gaplsm~eLA~eL~s~-G~-~VsvV~ls 281 (722)
+|++++......+ ......+.+|..+.+. |+ +|.++...
T Consensus 2 ~k~~ii~~~~p~~~~~~~~al~~a~~~~~~~g~~~v~vff~~ 43 (117)
T 1jx7_A 2 QKIVIVANGAPYGSESLFNSLRLAIALREQESNLDLRLFLMS 43 (117)
T ss_dssp CEEEEEECCCTTTCSHHHHHHHHHHHHHHHCTTCEEEEEECG
T ss_pred cEEEEEEcCCCCCcHHHHHHHHHHHHHHhcCCCccEEEEEEc
Confidence 4667776665443 4455689999999999 99 99888643
No 169
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}
Probab=28.58 E-value=46 Score=32.76 Aligned_cols=54 Identities=15% Similarity=0.223 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCcc--chhh--hcCccEEEECC
Q 004942 260 SMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP--SFKT--SMKADLVIAGS 319 (722)
Q Consensus 260 sm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~--~~~~--~~k~DlVia~S 319 (722)
.=..|++.|.+.|++|.+++-... .+ ..++.++..+... .+.. +.++|+||...
T Consensus 14 iG~~l~~~L~~~g~~V~~~~r~~~-~~-----~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a 71 (286)
T 3gpi_A 14 LGLELARRLTAQGHEVTGLRRSAQ-PM-----PAGVQTLIADVTRPDTLASIVHLRPEILVYCV 71 (286)
T ss_dssp HHHHHHHHHHHTTCCEEEEECTTS-CC-----CTTCCEEECCTTCGGGCTTGGGGCCSEEEECH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCcc-cc-----ccCCceEEccCCChHHHHHhhcCCCCEEEEeC
Confidence 344578899999999999983322 22 2567777654422 2222 23599996653
No 170
>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}
Probab=28.55 E-value=1.7e+02 Score=29.01 Aligned_cols=73 Identities=12% Similarity=0.078 Sum_probs=40.0
Q ss_pred cEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCC---hhHHHhCCcEE--EEcCCcc-----chhh----
Q 004942 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGL---MPELARRKIKV--LEDRGEP-----SFKT---- 308 (722)
Q Consensus 243 kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l---~~el~~~gI~V--l~~~~~~-----~~~~---- 308 (722)
.|+++|+- |+.-.=..+|+.|.+.|++|.++... ...+ ..++...+..+ +..+... .+..
T Consensus 33 gk~~lVTG-----as~GIG~aia~~la~~G~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 106 (275)
T 4imr_A 33 GRTALVTG-----SSRGIGAAIAEGLAGAGAHVILHGVK-PGSTAAVQQRIIASGGTAQELAGDLSEAGAGTDLIERAEA 106 (275)
T ss_dssp TCEEEETT-----CSSHHHHHHHHHHHHTTCEEEEEESS-TTTTHHHHHHHHHTTCCEEEEECCTTSTTHHHHHHHHHHH
T ss_pred CCEEEEEC-----CCCHHHHHHHHHHHHCCCEEEEEcCC-HHHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHHHHHHH
Confidence 35666643 33333456899999999999887632 2222 22333344444 3333221 1111
Q ss_pred hcCccEEEECCch
Q 004942 309 SMKADLVIAGSAV 321 (722)
Q Consensus 309 ~~k~DlVia~Sav 321 (722)
.-++|+++.+..+
T Consensus 107 ~g~iD~lvnnAg~ 119 (275)
T 4imr_A 107 IAPVDILVINASA 119 (275)
T ss_dssp HSCCCEEEECCCC
T ss_pred hCCCCEEEECCCC
Confidence 2478999888643
No 171
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=28.54 E-value=1e+02 Score=30.22 Aligned_cols=73 Identities=14% Similarity=0.126 Sum_probs=41.0
Q ss_pred cEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCC---ChhHHHhCCcEEEEcCCcc-------chhh----
Q 004942 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG---LMPELARRKIKVLEDRGEP-------SFKT---- 308 (722)
Q Consensus 243 kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~---l~~el~~~gI~Vl~~~~~~-------~~~~---- 308 (722)
.|+++|+- |+.-.=..+|+.|.+.|++|.++.-. ... +..++...+.++.....+. .+..
T Consensus 7 ~k~vlVTG-----as~GIG~aia~~l~~~G~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 80 (252)
T 3h7a_A 7 NATVAVIG-----AGDYIGAEIAKKFAAEGFTVFAGRRN-GEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADA 80 (252)
T ss_dssp SCEEEEEC-----CSSHHHHHHHHHHHHTTCEEEEEESS-GGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEEC-----CCchHHHHHHHHHHHCCCEEEEEeCC-HHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHh
Confidence 45666653 22233456889999999998887622 122 2234444455554433332 1111
Q ss_pred hcCccEEEECCch
Q 004942 309 SMKADLVIAGSAV 321 (722)
Q Consensus 309 ~~k~DlVia~Sav 321 (722)
.-++|++|.+..+
T Consensus 81 ~g~id~lv~nAg~ 93 (252)
T 3h7a_A 81 HAPLEVTIFNVGA 93 (252)
T ss_dssp HSCEEEEEECCCC
T ss_pred hCCceEEEECCCc
Confidence 2478999888654
No 172
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}
Probab=28.45 E-value=69 Score=32.74 Aligned_cols=84 Identities=11% Similarity=0.092 Sum_probs=44.5
Q ss_pred cCCCchhhhhccccEEEEEeCCCCCCcHHHHHHHHHHHHHhC-CCEEEEEEEcCCCCChhHHHhCCcEEEEcCCc-c--c
Q 004942 230 CDRKGDFARFVWSRKFILIFHELSMTGAPLSMMELATELLSC-GATVSAVVLSKRGGLMPELARRKIKVLEDRGE-P--S 305 (722)
Q Consensus 230 ~~~~~~f~~~~~~kkillI~hels~gGaplsm~eLA~eL~s~-G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~-~--~ 305 (722)
|...+.... |+.++|++. ||+...=..|+++|++. |++|.+++-. ...........++.++..+.. . .
T Consensus 13 ~~~~~~~~~-m~~~~vlVt------GatG~iG~~l~~~L~~~~g~~V~~~~r~-~~~~~~~~~~~~v~~~~~Dl~~d~~~ 84 (372)
T 3slg_A 13 EAQTQGPGS-MKAKKVLIL------GVNGFIGHHLSKRILETTDWEVFGMDMQ-TDRLGDLVKHERMHFFEGDITINKEW 84 (372)
T ss_dssp -----------CCCEEEEE------SCSSHHHHHHHHHHHHHSSCEEEEEESC-CTTTGGGGGSTTEEEEECCTTTCHHH
T ss_pred hhhhcCCcc-cCCCEEEEE------CCCChHHHHHHHHHHhCCCCEEEEEeCC-hhhhhhhccCCCeEEEeCccCCCHHH
Confidence 444444444 444666543 34444556688889888 9999998732 223322233468888876654 2 2
Q ss_pred hhh-hcCccEEEECCch
Q 004942 306 FKT-SMKADLVIAGSAV 321 (722)
Q Consensus 306 ~~~-~~k~DlVia~Sav 321 (722)
+.. -.++|+||...+.
T Consensus 85 ~~~~~~~~d~Vih~A~~ 101 (372)
T 3slg_A 85 VEYHVKKCDVILPLVAI 101 (372)
T ss_dssp HHHHHHHCSEEEECBCC
T ss_pred HHHHhccCCEEEEcCcc
Confidence 222 2378999876544
No 173
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=28.40 E-value=2.7e+02 Score=23.60 Aligned_cols=83 Identities=11% Similarity=0.097 Sum_probs=52.9
Q ss_pred EEeCCchhhHHHHHHH--cCEEEEcCCCCCCCccHHHHHHHHh--CCCEEE-cCCCCh---hhhhccCccEEEECCCCcc
Q 004942 608 MLWTPATTRVASLYSA--ADVYVINSQGLGETFGRVTIEAMAF--GVPVLG-TDAGGT---KEIVEHNVTGLLHPPGHPG 679 (722)
Q Consensus 608 V~f~G~~~dv~~lysa--ADv~V~pS~~l~EgfglviLEAMA~--GlPVVa-Td~GG~---~EIVe~g~tGlLvp~~d~~ 679 (722)
|.......+...++.. .|++++-.. +...-|.-+++.+.- .+|||. |..... .+.++.|..+++..|-+.
T Consensus 31 v~~~~~~~~al~~~~~~~~dlvllD~~-l~~~~g~~l~~~l~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~- 108 (136)
T 2qzj_A 31 IDLAYNCEEAIGKIFSNKYDLIFLEII-LSDGDGWTLCKKIRNVTTCPIVYMTYINEDQSILNALNSGGDDYLIKPLNL- 108 (136)
T ss_dssp EEEESSHHHHHHHHHHCCCSEEEEESE-ETTEEHHHHHHHHHTTCCCCEEEEESCCCHHHHHHHHHTTCCEEEESSCCH-
T ss_pred EEEECCHHHHHHHHHhcCCCEEEEeCC-CCCCCHHHHHHHHccCCCCCEEEEEcCCCHHHHHHHHHcCCcEEEECCCCH-
Confidence 4443333344444443 488887654 344456677777643 578766 333332 345667889999999888
Q ss_pred HHHHHHHHHHhhcC
Q 004942 680 AQVLAQNLRYLLKN 693 (722)
Q Consensus 680 ~e~LA~aI~~LL~n 693 (722)
+.|.+.|..++..
T Consensus 109 -~~L~~~l~~~~~~ 121 (136)
T 2qzj_A 109 -EILYAKVKAILRR 121 (136)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHH
Confidence 8999999887653
No 174
>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}
Probab=28.36 E-value=66 Score=32.60 Aligned_cols=73 Identities=12% Similarity=0.027 Sum_probs=44.0
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCcc-------chhhhcCccEEE
Q 004942 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP-------SFKTSMKADLVI 316 (722)
Q Consensus 244 killI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~-------~~~~~~k~DlVi 316 (722)
|+++|+- |+.=.=..+|+.|.+.|++|.+...........++...|.++.....+. ...+.-+.|+++
T Consensus 10 KvalVTG-----as~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~g~iDiLV 84 (247)
T 4hp8_A 10 RKALVTG-----ANTGLGQAIAVGLAAAGAEVVCAARRAPDETLDIIAKDGGNASALLIDFADPLAAKDSFTDAGFDILV 84 (247)
T ss_dssp CEEEETT-----TTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTSTTTTTTSSTTTCCCEEE
T ss_pred CEEEEeC-----cCCHHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHhCCCCEEE
Confidence 5666653 2222335578999999999988763222223445666776665443332 233356799998
Q ss_pred ECCch
Q 004942 317 AGSAV 321 (722)
Q Consensus 317 a~Sav 321 (722)
.|..+
T Consensus 85 NNAGi 89 (247)
T 4hp8_A 85 NNAGI 89 (247)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 88643
No 175
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1
Probab=28.33 E-value=80 Score=35.74 Aligned_cols=62 Identities=16% Similarity=0.078 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEEEcCCC--------CChhHHHhCCcEEEEcCCcc-----chhhhcCccEEEEC
Q 004942 257 APLSMMELATELLSCGATVSAVVLSKRG--------GLMPELARRKIKVLEDRGEP-----SFKTSMKADLVIAG 318 (722)
Q Consensus 257 aplsm~eLA~eL~s~G~~VsvV~ls~~g--------~l~~el~~~gI~Vl~~~~~~-----~~~~~~k~DlVia~ 318 (722)
.+-....-.++|...||+|.+|....+. .......+.||+++...... ....+.+||+|++-
T Consensus 8 s~~~~~~~l~~l~~~~~~i~~v~t~~~~~~~~~~~~~~~~~a~~~~ip~~~~~~~~~~~~~~~l~~~~~d~iv~~ 82 (660)
T 1z7e_A 8 YHDMGCLGIEALLAAGYEISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPDNVNHPLWVERIAQLSPDVIFSF 82 (660)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCCC--------CCHHHHHHHHTCCEECCSCTTSHHHHHHHHHHCCSEEEEE
T ss_pred eCHHHHHHHHHHHhCCCCEEEEEeCCCCCccCcCccHHHHHHHHcCCCEeccCCCCcHHHHHHHHhcCCCEEEEc
Confidence 3333333445666779999988855433 24455668999998754332 23347899999653
No 176
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=28.19 E-value=90 Score=33.82 Aligned_cols=58 Identities=16% Similarity=0.163 Sum_probs=37.0
Q ss_pred cEEEEEeCCCCCCcHHHHHHHHHHHHHhC--CCEEEEEEEcCCC-C-ChhHHHh-----CCcEEEEcCC
Q 004942 243 RKFILIFHELSMTGAPLSMMELATELLSC--GATVSAVVLSKRG-G-LMPELAR-----RKIKVLEDRG 302 (722)
Q Consensus 243 kkillI~hels~gGaplsm~eLA~eL~s~--G~~VsvV~ls~~g-~-l~~el~~-----~gI~Vl~~~~ 302 (722)
.+|+++.. ...|=-.-|++||+.|.+. ||+|++++..... . +...+.+ .+|+++.++.
T Consensus 10 ~~vv~~p~--p~~GHi~P~l~La~~L~~r~pG~~Vt~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~ 76 (463)
T 2acv_A 10 SELIFIPA--PGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQPQIQLIDLPE 76 (463)
T ss_dssp EEEEEECC--SSTTTHHHHHHHHHHHHHTCTTEEEEEEECCCTTCCCCHHHHHHHHCSCTTEEEEECCC
T ss_pred CEEEEEcC--cccchHHHHHHHHHHHHhcCCCcEEEEEEcCCcchhhhhhhhhhcccCCCCceEEECCC
Confidence 46665532 2334445599999999998 9999999844321 1 1222222 5788887664
No 177
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=28.11 E-value=2.7e+02 Score=23.34 Aligned_cols=85 Identities=9% Similarity=0.076 Sum_probs=54.5
Q ss_pred EEeCCchhhHHHHHHH---cCEEEEcCCCCCCCccHHHHHHHHh----CCCEEEc-CCCCh---hhhhccCccEEEECCC
Q 004942 608 MLWTPATTRVASLYSA---ADVYVINSQGLGETFGRVTIEAMAF----GVPVLGT-DAGGT---KEIVEHNVTGLLHPPG 676 (722)
Q Consensus 608 V~f~G~~~dv~~lysa---ADv~V~pS~~l~EgfglviLEAMA~----GlPVVaT-d~GG~---~EIVe~g~tGlLvp~~ 676 (722)
|.......+....+.. .|++++-.. +.+.-|..+++.+.. .+|||.. ..... .+.+..|..+++..|-
T Consensus 34 v~~~~~~~~a~~~~~~~~~~dlvi~D~~-l~~~~g~~~~~~l~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~ 112 (136)
T 3hdv_A 34 AVGADGAEEARLYLHYQKRIGLMITDLR-MQPESGLDLIRTIRASERAALSIIVVSGDTDVEEAVDVMHLGVVDFLLKPV 112 (136)
T ss_dssp EEEESSHHHHHHHHHHCTTEEEEEECSC-CSSSCHHHHHHHHHTSTTTTCEEEEEESSCCHHHHHHHHHTTCSEEEESSC
T ss_pred EEEeCCHHHHHHHHHhCCCCcEEEEecc-CCCCCHHHHHHHHHhcCCCCCCEEEEeCCCChHHHHHHHhCCcceEEeCCC
Confidence 4444333344344432 578887765 456667788887753 4677763 33332 3455678899999998
Q ss_pred CccHHHHHHHHHHhhcCHH
Q 004942 677 HPGAQVLAQNLRYLLKNPS 695 (722)
Q Consensus 677 d~~~e~LA~aI~~LL~np~ 695 (722)
+. +.|.++|.+++....
T Consensus 113 ~~--~~l~~~i~~~~~~~~ 129 (136)
T 3hdv_A 113 DL--GKLLELVNKELKIGE 129 (136)
T ss_dssp CH--HHHHHHHHHHHC---
T ss_pred CH--HHHHHHHHHHhcCch
Confidence 88 999999999887543
No 178
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}
Probab=28.03 E-value=2e+02 Score=29.29 Aligned_cols=66 Identities=18% Similarity=0.144 Sum_probs=40.2
Q ss_pred CcHHHHHHHHHHHHHh--CCCEEEEEEEcCCC-----------CChhHHHhCCcEEEEcCCcc--chhh--hcCccEEEE
Q 004942 255 TGAPLSMMELATELLS--CGATVSAVVLSKRG-----------GLMPELARRKIKVLEDRGEP--SFKT--SMKADLVIA 317 (722)
Q Consensus 255 gGaplsm~eLA~eL~s--~G~~VsvV~ls~~g-----------~l~~el~~~gI~Vl~~~~~~--~~~~--~~k~DlVia 317 (722)
||+...-..|++.|.+ .|++|.++.-.... .-...+...++.++..+... .+.. ..++|+||.
T Consensus 17 GatG~IG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~D~vih 96 (362)
T 3sxp_A 17 GGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINNPLDLRRLEKLHFDYLFH 96 (362)
T ss_dssp TTTSHHHHHHHHHHHHHCTTSEEEEEECCCCC-------CCCCCCGGGGTTCCSEEEECCTTCHHHHHHHTTSCCSEEEE
T ss_pred CCCCHHHHHHHHHHHhhCCCCeEEEEECCCccccccccchhhhhhhhhccccCceEEECCCCCHHHHHHhhccCCCEEEE
Confidence 4445555678889999 99999998733220 11223334566777655432 2332 458999977
Q ss_pred CCc
Q 004942 318 GSA 320 (722)
Q Consensus 318 ~Sa 320 (722)
..+
T Consensus 97 ~A~ 99 (362)
T 3sxp_A 97 QAA 99 (362)
T ss_dssp CCC
T ss_pred CCc
Confidence 755
No 179
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=27.71 E-value=2.5e+02 Score=25.44 Aligned_cols=83 Identities=14% Similarity=0.153 Sum_probs=54.0
Q ss_pred EEeCCchhhHHHHHHH--cCEEEEcCCCCCCCccHHHHHHHH---hCCCEEE-cCCCCh---hhhhccCccEEEECCCCc
Q 004942 608 MLWTPATTRVASLYSA--ADVYVINSQGLGETFGRVTIEAMA---FGVPVLG-TDAGGT---KEIVEHNVTGLLHPPGHP 678 (722)
Q Consensus 608 V~f~G~~~dv~~lysa--ADv~V~pS~~l~EgfglviLEAMA---~GlPVVa-Td~GG~---~EIVe~g~tGlLvp~~d~ 678 (722)
|.......+..+.+.. .|++++-.. +.+.-|.-+++.+- ..+|||. |..... .+.+..|..|++..|-++
T Consensus 34 v~~~~~~~~al~~~~~~~~dlvl~D~~-lp~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~ 112 (184)
T 3rqi_A 34 VRQAHNKDEALKLAGAEKFEFITVXLH-LGNDSGLSLIAPLCDLQPDARILVLTGYASIATAVQAVKDGADNYLAKPANV 112 (184)
T ss_dssp EEEECSHHHHHHHHTTSCCSEEEECSE-ETTEESHHHHHHHHHHCTTCEEEEEESSCCHHHHHHHHHHTCSEEEESSCCH
T ss_pred EEEeCCHHHHHHHHhhCCCCEEEEecc-CCCccHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHhCHHHheeCCCCH
Confidence 4433333344444443 488888654 45556777777764 3678876 444433 345677889999999888
Q ss_pred cHHHHHHHHHHhhcC
Q 004942 679 GAQVLAQNLRYLLKN 693 (722)
Q Consensus 679 ~~e~LA~aI~~LL~n 693 (722)
+.|..+|..++..
T Consensus 113 --~~L~~~i~~~~~~ 125 (184)
T 3rqi_A 113 --ESILAALQTNASE 125 (184)
T ss_dssp --HHHHHHTSTTHHH
T ss_pred --HHHHHHHHHHHHH
Confidence 8999888877653
No 180
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}
Probab=27.62 E-value=46 Score=35.18 Aligned_cols=71 Identities=21% Similarity=0.298 Sum_probs=48.2
Q ss_pred ccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCC--C---------ChhHHHhCCcEEEEcCCccchhhhc
Q 004942 242 SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRG--G---------LMPELARRKIKVLEDRGEPSFKTSM 310 (722)
Q Consensus 242 ~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g--~---------l~~el~~~gI~Vl~~~~~~~~~~~~ 310 (722)
.+++++| |+...-+|+|..|.+.|.+|+++.....- . +...+.+.||+++....-..+-+..
T Consensus 146 ~~~vvVI-------GgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~ig~~~ 218 (385)
T 3klj_A 146 KGKAFII-------GGGILGIELAQAIIDSGTPASIGIILEYPLERQLDRDGGLFLKDKLDRLGIKIYTNSNFEEMGDLI 218 (385)
T ss_dssp HSCEEEE-------CCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTTSCHHHHHHHHHHHHTTTCEEECSCCGGGCHHHH
T ss_pred CCeEEEE-------CCCHHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHHHHhCCCEEEeCCEEEEcCeEE
Confidence 5788877 44556789999999999999998633211 0 2234567899998654433444456
Q ss_pred CccEEEECC
Q 004942 311 KADLVIAGS 319 (722)
Q Consensus 311 k~DlVia~S 319 (722)
.+|+|+...
T Consensus 219 ~~D~vv~a~ 227 (385)
T 3klj_A 219 RSSCVITAV 227 (385)
T ss_dssp HHSEEEECC
T ss_pred ecCeEEECc
Confidence 788887664
No 181
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=27.22 E-value=4e+02 Score=25.11 Aligned_cols=83 Identities=16% Similarity=0.150 Sum_probs=55.2
Q ss_pred EEeCCchhhHHHHHHH--cCEEEEcCCCCCCCccHHHHHHHHh--CCCEEEc-CC---CChhhhhccCccEEEECCCCcc
Q 004942 608 MLWTPATTRVASLYSA--ADVYVINSQGLGETFGRVTIEAMAF--GVPVLGT-DA---GGTKEIVEHNVTGLLHPPGHPG 679 (722)
Q Consensus 608 V~f~G~~~dv~~lysa--ADv~V~pS~~l~EgfglviLEAMA~--GlPVVaT-d~---GG~~EIVe~g~tGlLvp~~d~~ 679 (722)
|.......+....+.. .|++++-.. +.+.-|..+++.+.. .+|||.- .. ....+.+..|..|++..|-++
T Consensus 32 v~~~~~~~~al~~l~~~~~dlvilD~~-l~~~~g~~~~~~lr~~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~- 109 (238)
T 2gwr_A 32 TAVIGDGTQALTAVRELRPDLVLLDLM-LPGMNGIDVCRVLRADSGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKP- 109 (238)
T ss_dssp EEEECCGGGHHHHHHHHCCSEEEEESS-CSSSCHHHHHHHHHTTCCCCEEEEEETTCCSCHHHHHHTTCCEEEEESCCH-
T ss_pred EEEECCHHHHHHHHHhCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCH-
Confidence 4444433444444433 588888765 345557777777643 6888763 22 334566778899999998888
Q ss_pred HHHHHHHHHHhhcC
Q 004942 680 AQVLAQNLRYLLKN 693 (722)
Q Consensus 680 ~e~LA~aI~~LL~n 693 (722)
++|.++|..++..
T Consensus 110 -~~L~~~i~~~~~~ 122 (238)
T 2gwr_A 110 -KELVARVRARLRR 122 (238)
T ss_dssp -HHHHHHHHHHCCC
T ss_pred -HHHHHHHHHHHhh
Confidence 9999999988753
No 182
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*
Probab=27.19 E-value=1e+02 Score=31.13 Aligned_cols=74 Identities=19% Similarity=0.161 Sum_probs=41.9
Q ss_pred hccccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCCh---hHHHhCCcEEEEcCCcc--chhh---hc
Q 004942 239 FVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLM---PELARRKIKVLEDRGEP--SFKT---SM 310 (722)
Q Consensus 239 ~~~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~---~el~~~gI~Vl~~~~~~--~~~~---~~ 310 (722)
.+..++|+ |+ ||+...=..|+++|.+.|++|.++.-... ... ..+ .++.++..+... .+.. ..
T Consensus 17 ~~~~~~vl-VT-----GasG~iG~~l~~~L~~~g~~V~~~~r~~~-~~~~~~~~l--~~v~~~~~Dl~d~~~~~~~~~~~ 87 (330)
T 2pzm_A 17 RGSHMRIL-IT-----GGAGCLGSNLIEHWLPQGHEILVIDNFAT-GKREVLPPV--AGLSVIEGSVTDAGLLERAFDSF 87 (330)
T ss_dssp TTTCCEEE-EE-----TTTSHHHHHHHHHHGGGTCEEEEEECCSS-SCGGGSCSC--TTEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCCEEE-EE-----CCCCHHHHHHHHHHHHCCCEEEEEECCCc-cchhhhhcc--CCceEEEeeCCCHHHHHHHHhhc
Confidence 34445554 43 33344456688899999999998873222 211 111 356666544332 2333 22
Q ss_pred CccEEEECCch
Q 004942 311 KADLVIAGSAV 321 (722)
Q Consensus 311 k~DlVia~Sav 321 (722)
++|+||.+.+.
T Consensus 88 ~~D~vih~A~~ 98 (330)
T 2pzm_A 88 KPTHVVHSAAA 98 (330)
T ss_dssp CCSEEEECCCC
T ss_pred CCCEEEECCcc
Confidence 89999877544
No 183
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=27.08 E-value=1.5e+02 Score=24.43 Aligned_cols=57 Identities=14% Similarity=0.065 Sum_probs=35.3
Q ss_pred HHHHHHHHHhCC-CEEEEEEEcCCCCChhHHHhCCcEEEEcCCcc--chhh-hcCccEEEECC
Q 004942 261 MMELATELLSCG-ATVSAVVLSKRGGLMPELARRKIKVLEDRGEP--SFKT-SMKADLVIAGS 319 (722)
Q Consensus 261 m~eLA~eL~s~G-~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~--~~~~-~~k~DlVia~S 319 (722)
-..++..|.+.| ++|.++. +.......+...++.++...... .+.. -.++|+|+...
T Consensus 17 G~~~~~~l~~~g~~~v~~~~--r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~ 77 (118)
T 3ic5_A 17 GQMIAALLKTSSNYSVTVAD--HDLAALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAA 77 (118)
T ss_dssp HHHHHHHHHHCSSEEEEEEE--SCHHHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECS
T ss_pred HHHHHHHHHhCCCceEEEEe--CCHHHHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECC
Confidence 345778888999 8887765 33333445556778877654432 2222 23789987664
No 184
>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A
Probab=26.91 E-value=1.5e+02 Score=28.15 Aligned_cols=63 Identities=16% Similarity=0.040 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHhCCC--EEEEEEEcCCCCChhHHHhCCcEEEEcCCcc--chhh-hcCccEEEECCch
Q 004942 257 APLSMMELATELLSCGA--TVSAVVLSKRGGLMPELARRKIKVLEDRGEP--SFKT-SMKADLVIAGSAV 321 (722)
Q Consensus 257 aplsm~eLA~eL~s~G~--~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~--~~~~-~~k~DlVia~Sav 321 (722)
+.-.=..+++.|.+.|+ +|.++.-.. ..+ .++...++.++..+... .+.. -.++|+||.+...
T Consensus 27 sg~iG~~l~~~L~~~G~~~~V~~~~r~~-~~~-~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~ag~ 94 (242)
T 2bka_A 27 SGETGRVLLKEILEQGLFSKVTLIGRRK-LTF-DEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGT 94 (242)
T ss_dssp TSHHHHHHHHHHHHHTCCSEEEEEESSC-CCC-CSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCC
T ss_pred CcHHHHHHHHHHHcCCCCCEEEEEEcCC-CCc-cccccCCceEEecCcCCHHHHHHHhcCCCEEEECCCc
Confidence 33444567889999999 998887322 222 22222356666544322 3333 2378999877654
No 185
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}
Probab=26.83 E-value=1.1e+02 Score=30.03 Aligned_cols=73 Identities=12% Similarity=0.088 Sum_probs=40.3
Q ss_pred cEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHh--CCcEEEEcCCcc--chh---h-----hc
Q 004942 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELAR--RKIKVLEDRGEP--SFK---T-----SM 310 (722)
Q Consensus 243 kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~--~gI~Vl~~~~~~--~~~---~-----~~ 310 (722)
.|.++|+ ||+.-.=..+|+.|.+.|++|.++.-. ...+...... .++.++..+... .+. . .-
T Consensus 5 ~k~vlVT-----Gas~gIG~~~a~~l~~~G~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g 78 (281)
T 3m1a_A 5 AKVWLVT-----GASSGFGRAIAEAAVAAGDTVIGTARR-TEALDDLVAAYPDRAEAISLDVTDGERIDVVAADVLARYG 78 (281)
T ss_dssp CCEEEET-----TTTSHHHHHHHHHHHHTTCEEEEEESS-GGGGHHHHHHCTTTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CcEEEEE-----CCCChHHHHHHHHHHHCCCEEEEEeCC-HHHHHHHHHhccCCceEEEeeCCCHHHHHHHHHHHHHhCC
Confidence 3555563 333334456889999999999877622 2223222222 345555544332 121 1 12
Q ss_pred CccEEEECCch
Q 004942 311 KADLVIAGSAV 321 (722)
Q Consensus 311 k~DlVia~Sav 321 (722)
++|+++.+..+
T Consensus 79 ~id~lv~~Ag~ 89 (281)
T 3m1a_A 79 RVDVLVNNAGR 89 (281)
T ss_dssp CCSEEEECCCC
T ss_pred CCCEEEECCCc
Confidence 78999887643
No 186
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=26.82 E-value=2.9e+02 Score=23.41 Aligned_cols=84 Identities=17% Similarity=0.177 Sum_probs=54.8
Q ss_pred EEeCCchhhHHHHHHH--cCEEEEcCCCCCCCccHHHHHHHHh-----CCCEEE-cCCCChh---hhhccCccEEEECCC
Q 004942 608 MLWTPATTRVASLYSA--ADVYVINSQGLGETFGRVTIEAMAF-----GVPVLG-TDAGGTK---EIVEHNVTGLLHPPG 676 (722)
Q Consensus 608 V~f~G~~~dv~~lysa--ADv~V~pS~~l~EgfglviLEAMA~-----GlPVVa-Td~GG~~---EIVe~g~tGlLvp~~ 676 (722)
|.......+.-..+.. .|++++-.. +.+.-|..+++.+.. .+|+|. |..+... +.+..|..+++..|-
T Consensus 31 v~~~~~~~~al~~~~~~~~dlvl~D~~-lp~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~ga~~~l~KP~ 109 (136)
T 3t6k_A 31 VRRAASGEEALQQIYKNLPDALICDVL-LPGIDGYTLCKRVRQHPLTKTLPILMLTAQGDISAKIAGFEAGANDYLAKPF 109 (136)
T ss_dssp EEEESSHHHHHHHHHHSCCSEEEEESC-CSSSCHHHHHHHHHHSGGGTTCCEEEEECTTCHHHHHHHHHHTCSEEEETTC
T ss_pred EEEeCCHHHHHHHHHhCCCCEEEEeCC-CCCCCHHHHHHHHHcCCCcCCccEEEEecCCCHHHHHHHHhcCcceEEeCCC
Confidence 4433333333344433 488888765 455567778777743 578876 4444332 345678899999998
Q ss_pred CccHHHHHHHHHHhhcCH
Q 004942 677 HPGAQVLAQNLRYLLKNP 694 (722)
Q Consensus 677 d~~~e~LA~aI~~LL~np 694 (722)
++ ++|...|..++...
T Consensus 110 ~~--~~L~~~i~~~l~~~ 125 (136)
T 3t6k_A 110 EP--QELVYRVKNILART 125 (136)
T ss_dssp CH--HHHHHHHHHHHHC-
T ss_pred CH--HHHHHHHHHHHhcc
Confidence 88 99999999988643
No 187
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}
Probab=26.81 E-value=63 Score=31.06 Aligned_cols=62 Identities=8% Similarity=0.022 Sum_probs=36.2
Q ss_pred cHHHHHHHHHHHHHhCC-CEEEEEEEcCCCCChhHHHhCCcEEEEcCCcc--chhh-hcCccEEEECC
Q 004942 256 GAPLSMMELATELLSCG-ATVSAVVLSKRGGLMPELARRKIKVLEDRGEP--SFKT-SMKADLVIAGS 319 (722)
Q Consensus 256 Gaplsm~eLA~eL~s~G-~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~--~~~~-~~k~DlVia~S 319 (722)
|+.-.=..+++.|++.| ++|.+++ +...-..++...++.++..+... .+.. -..+|+||.+.
T Consensus 31 atG~iG~~l~~~L~~~G~~~V~~~~--R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a 96 (236)
T 3qvo_A 31 AGGQIARHVINQLADKQTIKQTLFA--RQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANL 96 (236)
T ss_dssp TTSHHHHHHHHHHTTCTTEEEEEEE--SSGGGSCSSCCTTEEEEECCTTCHHHHHHHHTTCSEEEEEC
T ss_pred CCcHHHHHHHHHHHhCCCceEEEEE--cChhhhcccccCCcEEEEecCCCHHHHHHHhcCCCEEEEcC
Confidence 33444556888999999 8888877 32222222333467777655432 3333 23679887654
No 188
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}
Probab=26.57 E-value=74 Score=30.65 Aligned_cols=76 Identities=14% Similarity=0.108 Sum_probs=41.6
Q ss_pred cccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCC---ChhHHHhCCcEEEEcCCcc-------chhh--
Q 004942 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG---LMPELARRKIKVLEDRGEP-------SFKT-- 308 (722)
Q Consensus 241 ~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~---l~~el~~~gI~Vl~~~~~~-------~~~~-- 308 (722)
.+.|.++|+- |+.-.=..+|+.|.+.|+.|.+++...... ...++...+.++.....+. .+..
T Consensus 5 l~~k~vlITG-----as~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 79 (255)
T 3icc_A 5 LKGKVALVTG-----ASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSL 79 (255)
T ss_dssp TTTCEEEETT-----CSSHHHHHHHHHHHHTTCEEEEEESSCSHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHH
T ss_pred cCCCEEEEEC-----CCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhcCCceEEEecCcCCHHHHHHHHHHH
Confidence 3445666643 333334568999999999998876332222 2233445555554433332 1111
Q ss_pred --h-------cCccEEEECCch
Q 004942 309 --S-------MKADLVIAGSAV 321 (722)
Q Consensus 309 --~-------~k~DlVia~Sav 321 (722)
. .++|++|.+..+
T Consensus 80 ~~~~~~~~~~~~id~lv~nAg~ 101 (255)
T 3icc_A 80 DNELQNRTGSTKFDILINNAGI 101 (255)
T ss_dssp HHHHHHHHSSSCEEEEEECCCC
T ss_pred HHHhcccccCCcccEEEECCCC
Confidence 1 248999888654
No 189
>2ixd_A LMBE-related protein; hexamer, deacetylase, rossman fold, zinc-dependent metalloenzyme, hydrolase; 1.8A {Bacillus cereus}
Probab=26.46 E-value=1.1e+02 Score=30.63 Aligned_cols=53 Identities=19% Similarity=0.063 Sum_probs=30.3
Q ss_pred HHHhCCCEEEEEEEcCCCC----C----hhH----HHhCCcEE-EEcCCcc--------------chhhhcCccEEEECC
Q 004942 267 ELLSCGATVSAVVLSKRGG----L----MPE----LARRKIKV-LEDRGEP--------------SFKTSMKADLVIAGS 319 (722)
Q Consensus 267 eL~s~G~~VsvV~ls~~g~----l----~~e----l~~~gI~V-l~~~~~~--------------~~~~~~k~DlVia~S 319 (722)
.+.+.|++|.+|++..... . ..| +...|++. ..+.... .+.++.+||+|+++.
T Consensus 26 ~~~~~G~~V~vv~lT~G~~g~~~~~~~R~~E~~~A~~~LGv~~~~~L~~~D~~~~~~~~~~~~l~~~ir~~~PdvV~t~~ 105 (242)
T 2ixd_A 26 KYTKQGYEVGICDLTEADLSSNGTIELRKEEAKVAARIMGVKTRLNLAMPDRGLYMKEEYIREIVKVIRTYKPKLVFAPY 105 (242)
T ss_dssp HHHHTTCCEEEEEEECCTTCSSSCHHHHHHHHHHHHHHHTCCEEEEEEECTTCCCCCHHHHHHHHHHHHHHCCSEEEEEC
T ss_pred HHHHCCCeEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHcCCCeEEECCCCCCCCCChHHHHHHHHHHHHHcCCCEEEECC
Confidence 4456899999998875321 0 112 23567763 2222111 445578899998753
No 190
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}
Probab=26.44 E-value=80 Score=31.48 Aligned_cols=71 Identities=21% Similarity=0.142 Sum_probs=38.8
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHH-HhCC--cEEEEcCCcc-----chhhh-cCccE
Q 004942 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPEL-ARRK--IKVLEDRGEP-----SFKTS-MKADL 314 (722)
Q Consensus 244 killI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el-~~~g--I~Vl~~~~~~-----~~~~~-~k~Dl 314 (722)
|.++|+- |+.-.=..+|+.|.+.|++|.++. +...-..++ ...+ +.++..+... .+..+ .++|+
T Consensus 17 k~vlVTG-----as~gIG~~~a~~L~~~G~~V~~~~--r~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~iD~ 89 (291)
T 3rd5_A 17 RTVVITG-----ANSGLGAVTARELARRGATVIMAV--RDTRKGEAAARTMAGQVEVRELDLQDLSSVRRFADGVSGADV 89 (291)
T ss_dssp CEEEEEC-----CSSHHHHHHHHHHHHTTCEEEEEE--SCHHHHHHHHTTSSSEEEEEECCTTCHHHHHHHHHTCCCEEE
T ss_pred CEEEEeC-----CCChHHHHHHHHHHHCCCEEEEEE--CCHHHHHHHHHHhcCCeeEEEcCCCCHHHHHHHHHhcCCCCE
Confidence 5566653 222233568899999999998876 322212222 2223 4444433322 22223 37899
Q ss_pred EEECCch
Q 004942 315 VIAGSAV 321 (722)
Q Consensus 315 Via~Sav 321 (722)
++.+..+
T Consensus 90 lv~nAg~ 96 (291)
T 3rd5_A 90 LINNAGI 96 (291)
T ss_dssp EEECCCC
T ss_pred EEECCcC
Confidence 9888654
No 191
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=26.36 E-value=2e+02 Score=24.40 Aligned_cols=67 Identities=13% Similarity=0.257 Sum_probs=47.2
Q ss_pred cCEEEEcCCCCCC--CccHHHHHHHHh---CCCEEE-cCCCCh---hhhhccCccEEEECCCCccHHHHHHHHHHhhcC
Q 004942 624 ADVYVINSQGLGE--TFGRVTIEAMAF---GVPVLG-TDAGGT---KEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLKN 693 (722)
Q Consensus 624 ADv~V~pS~~l~E--gfglviLEAMA~---GlPVVa-Td~GG~---~EIVe~g~tGlLvp~~d~~~e~LA~aI~~LL~n 693 (722)
.|++++-.. +.+ .-|..+++.+.. .+|||. |..... .+.+..|..+++..|-+. +.|.++|..++..
T Consensus 51 ~dlvi~D~~-l~~~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~--~~l~~~i~~~~~~ 126 (136)
T 3kto_A 51 AIGMIIEAH-LEDKKDSGIELLETLVKRGFHLPTIVMASSSDIPTAVRAMRASAADFIEKPFIE--HVLVHDVQQIING 126 (136)
T ss_dssp EEEEEEETT-GGGBTTHHHHHHHHHHHTTCCCCEEEEESSCCHHHHHHHHHTTCSEEEESSBCH--HHHHHHHHHHHHH
T ss_pred CCEEEEeCc-CCCCCccHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHcChHHheeCCCCH--HHHHHHHHHHHhc
Confidence 488887664 345 556677776643 678876 444433 345677899999999888 9999999988763
No 192
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=25.98 E-value=2.7e+02 Score=22.72 Aligned_cols=66 Identities=20% Similarity=0.280 Sum_probs=46.5
Q ss_pred cCEEEEcCCCCCCCccHHHHHHHHh-----CCCEEEc-CC---CChhhhhccCccEEEECCCCccHHHHHHHHHHhhc
Q 004942 624 ADVYVINSQGLGETFGRVTIEAMAF-----GVPVLGT-DA---GGTKEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLK 692 (722)
Q Consensus 624 ADv~V~pS~~l~EgfglviLEAMA~-----GlPVVaT-d~---GG~~EIVe~g~tGlLvp~~d~~~e~LA~aI~~LL~ 692 (722)
.|++++-.. +.+.-|..+++.+.- .+|+|.- .. ....+.++.|..+++..|-+. +.|.+.|..+++
T Consensus 46 ~dlvi~D~~-l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~--~~l~~~i~~~~~ 120 (124)
T 1mb3_A 46 PDLILMDIQ-LPEISGLEVTKWLKEDDDLAHIPVVAVTAFAMKGDEERIREGGCEAYISKPISV--VHFLETIKRLLE 120 (124)
T ss_dssp CSEEEEESB-CSSSBHHHHHHHHHHSTTTTTSCEEEEC------CHHHHHHHTCSEEECSSCCH--HHHHHHHHHHHS
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHHcCccccCCcEEEEECCCCHHHHHHHHhCCCCEEEeCCCCH--HHHHHHHHHHHh
Confidence 589888765 345567777777753 5788764 22 233455677889999998887 999999988775
No 193
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}
Probab=25.91 E-value=1.1e+02 Score=29.77 Aligned_cols=73 Identities=10% Similarity=-0.015 Sum_probs=37.1
Q ss_pred cEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHh--CCcEEEEcCCcc--c---hhh-----hc
Q 004942 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELAR--RKIKVLEDRGEP--S---FKT-----SM 310 (722)
Q Consensus 243 kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~--~gI~Vl~~~~~~--~---~~~-----~~ 310 (722)
.|+++|+- |+.-.=..+|+.|.+.|++|.++.... ......... ..+.++..+... . +.. .-
T Consensus 7 ~k~~lVTG-----as~gIG~aia~~l~~~G~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 80 (257)
T 3tpc_A 7 SRVFIVTG-----ASSGLGAAVTRMLAQEGATVLGLDLKP-PAGEEPAAELGAAVRFRNADVTNEADATAALAFAKQEFG 80 (257)
T ss_dssp TCEEEEES-----TTSHHHHHHHHHHHHTTCEEEEEESSC-C------------CEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCEEEEeC-----CCCHHHHHHHHHHHHCCCEEEEEeCCh-HHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 35666654 222334568899999999998876332 222222222 234455443322 1 111 22
Q ss_pred CccEEEECCch
Q 004942 311 KADLVIAGSAV 321 (722)
Q Consensus 311 k~DlVia~Sav 321 (722)
++|+++.+..+
T Consensus 81 ~id~lv~nAg~ 91 (257)
T 3tpc_A 81 HVHGLVNCAGT 91 (257)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 89999888654
No 194
>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2
Probab=25.89 E-value=1.3e+02 Score=29.98 Aligned_cols=67 Identities=18% Similarity=0.041 Sum_probs=38.8
Q ss_pred CcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHH----hCCcEEEEcCCcc--chhh---hcCccEEEECCch
Q 004942 255 TGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELA----RRKIKVLEDRGEP--SFKT---SMKADLVIAGSAV 321 (722)
Q Consensus 255 gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~----~~gI~Vl~~~~~~--~~~~---~~k~DlVia~Sav 321 (722)
||+...=..|++.|.+.|++|.+++-.........+. ..++.++..+... .+.. ..++|+||...+.
T Consensus 21 GatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~Vih~A~~ 96 (335)
T 1rpn_A 21 GITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVYNLAAQ 96 (335)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSEEEECCSC
T ss_pred CCCChHHHHHHHHHHHCCCeEEEEeCCCccccccchhhccccCceEEEECCCCCHHHHHHHHHHcCCCEEEECccc
Confidence 4445555678889999999999887332221112222 2356666544322 2222 3378999877554
No 195
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=25.76 E-value=64 Score=31.23 Aligned_cols=72 Identities=11% Similarity=0.027 Sum_probs=41.1
Q ss_pred cEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCC----ChhHHHhCCcEEEEcCCcc-------chhh---
Q 004942 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG----LMPELARRKIKVLEDRGEP-------SFKT--- 308 (722)
Q Consensus 243 kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~----l~~el~~~gI~Vl~~~~~~-------~~~~--- 308 (722)
.|.++|+- |+.-.=..+|+.|.+.|++|.++. +... +..++...+-++.....+. .+..
T Consensus 9 ~k~vlITG-----as~giG~~~a~~l~~~G~~V~~~~--r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 81 (253)
T 3qiv_A 9 NKVGIVTG-----SGGGIGQAYAEALAREGAAVVVAD--INAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTL 81 (253)
T ss_dssp TCEEEEET-----TTSHHHHHHHHHHHHTTCEEEEEE--SCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCEEEEEC-----CCChHHHHHHHHHHHCCCEEEEEc--CCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 45666653 333334568999999999988876 2221 2233444454544333332 1111
Q ss_pred --hcCccEEEECCch
Q 004942 309 --SMKADLVIAGSAV 321 (722)
Q Consensus 309 --~~k~DlVia~Sav 321 (722)
.-++|++|.+..+
T Consensus 82 ~~~g~id~li~~Ag~ 96 (253)
T 3qiv_A 82 AEFGGIDYLVNNAAI 96 (253)
T ss_dssp HHHSCCCEEEECCCC
T ss_pred HHcCCCCEEEECCCc
Confidence 1289999888755
No 196
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=25.60 E-value=3.1e+02 Score=23.21 Aligned_cols=83 Identities=10% Similarity=0.099 Sum_probs=51.5
Q ss_pred EEeCCchhhHHHHHHH--cCEEEEcCCCCCCCccHHHHHHHH--------hCCCEEEc-CCCChhhhhccCccEEEECCC
Q 004942 608 MLWTPATTRVASLYSA--ADVYVINSQGLGETFGRVTIEAMA--------FGVPVLGT-DAGGTKEIVEHNVTGLLHPPG 676 (722)
Q Consensus 608 V~f~G~~~dv~~lysa--ADv~V~pS~~l~EgfglviLEAMA--------~GlPVVaT-d~GG~~EIVe~g~tGlLvp~~ 676 (722)
|.......+...++.. .|++++-.. +...-|..+++.+. ..+|++.. ......+....|..|++..|-
T Consensus 37 v~~~~~~~~al~~l~~~~~dlvllD~~-lp~~~g~~~~~~l~~~~~~~~~~~~~ii~~s~~~~~~~~~~~g~~~~l~KP~ 115 (140)
T 3c97_A 37 ITVVTNGLQALQAYQNRQFDVIIMDIQ-MPVMDGLEAVSEIRNYERTHNTKRASIIAITADTIDDDRPGAELDEYVSKPL 115 (140)
T ss_dssp EEEESSHHHHHHHHHHSCCSEEEECTT-CCSSCHHHHHHHHHHHHHHHTCCCCCCEEEESSCCSCCCCCSSCSEEEESSC
T ss_pred eEEECCHHHHHHHHhcCCCCEEEEeCC-CCCCcHHHHHHHHHhhhhhcCCCceEEEEEeCccchhHHHhCChhheEeCCC
Confidence 4444433444444443 589888765 34445666777664 24677653 333333334556789999998
Q ss_pred CccHHHHHHHHHHhhcC
Q 004942 677 HPGAQVLAQNLRYLLKN 693 (722)
Q Consensus 677 d~~~e~LA~aI~~LL~n 693 (722)
+. ++|.+.|..+++.
T Consensus 116 ~~--~~L~~~i~~~~~~ 130 (140)
T 3c97_A 116 NP--NQLRDVVLTCHSE 130 (140)
T ss_dssp CH--HHHHHHHHHHHC-
T ss_pred CH--HHHHHHHHHHhCC
Confidence 88 9999999988764
No 197
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}
Probab=25.46 E-value=1.2e+02 Score=30.53 Aligned_cols=67 Identities=9% Similarity=0.081 Sum_probs=37.9
Q ss_pred CcHHHHHHHHHHHHHhCCCEEEEEEEcCCC--CChhHHH----hCCcEEEEcCCcc--chh---hhcCccEEEECCch
Q 004942 255 TGAPLSMMELATELLSCGATVSAVVLSKRG--GLMPELA----RRKIKVLEDRGEP--SFK---TSMKADLVIAGSAV 321 (722)
Q Consensus 255 gGaplsm~eLA~eL~s~G~~VsvV~ls~~g--~l~~el~----~~gI~Vl~~~~~~--~~~---~~~k~DlVia~Sav 321 (722)
||+...=..|+++|++.|+++.|++..... .....+. ..++.++..+... .+. ...++|+||...+.
T Consensus 31 GatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~Vih~A~~ 108 (346)
T 4egb_A 31 GGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLNNVKSIQDHPNYYFVKGEIQNGELLEHVIKERDVQVIVNFAAE 108 (346)
T ss_dssp TTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHTCCEEEECCCC
T ss_pred CCccHHHHHHHHHHHhhCCCcEEEEEeccccccchhhhhhhccCCCeEEEEcCCCCHHHHHHHHhhcCCCEEEECCcc
Confidence 344555567888999999666655544432 2222222 2467777655432 222 23469999776543
No 198
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}
Probab=25.24 E-value=1.4e+02 Score=29.84 Aligned_cols=64 Identities=13% Similarity=0.011 Sum_probs=38.5
Q ss_pred CcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCcc--chhh-hcCccEEEECCc
Q 004942 255 TGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP--SFKT-SMKADLVIAGSA 320 (722)
Q Consensus 255 gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~--~~~~-~~k~DlVia~Sa 320 (722)
||+...=..|++.|.+.|++|.+++-. ..-...+...++.++..+... .+.. -.++|+||...+
T Consensus 20 GatG~iG~~l~~~L~~~g~~V~~~~r~--~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~a~ 86 (342)
T 2x4g_A 20 GATGLLGHHAARAIRAAGHDLVLIHRP--SSQIQRLAYLEPECRVAEMLDHAGLERALRGLDGVIFSAG 86 (342)
T ss_dssp STTSHHHHHHHHHHHHTTCEEEEEECT--TSCGGGGGGGCCEEEECCTTCHHHHHHHTTTCSEEEEC--
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEecC--hHhhhhhccCCeEEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence 344455566788999999999988732 222334444478877655432 3333 236899976644
No 199
>2yc6_A Triosephosphate isomerase; glycolysis; HET: PGA; 1.45A {Giardia intestinalis} PDB: 2dp3_A 2yc7_A* 3pf3_A 2yc8_A
Probab=25.07 E-value=2.1e+02 Score=29.36 Aligned_cols=42 Identities=19% Similarity=0.163 Sum_probs=28.5
Q ss_pred CchhHHHHhhhhHHHHHHHhCCC-CCCEEEEEEecCCCCCCHHH
Q 004942 418 SPEKMREKRNLLRDSVRKEMGLT-DQDMLVLSLSSINPGKGQLL 460 (722)
Q Consensus 418 ~~~~~~ekr~~~r~~~R~elgl~-~~~~lIl~vGri~~~Kg~~~ 460 (722)
+|+..++-...+|+.+.+.++-. .+...|+|=|++++. |...
T Consensus 182 tpe~aqevh~~IR~~l~~~~~~~~a~~vrIlYGGSV~~~-N~~~ 224 (257)
T 2yc6_A 182 TPEQAEEVHVGLRKWFVEKVAAEGAQHIRIIYGGSANGS-NNEK 224 (257)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEESSCCTT-THHH
T ss_pred CHHHHHHHHHHHHHHHHHhcChhhcccceEEEcCccCHH-HHHH
Confidence 45666666666777777666531 135689999999998 6544
No 200
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=25.01 E-value=1.1e+02 Score=29.44 Aligned_cols=75 Identities=11% Similarity=0.013 Sum_probs=40.6
Q ss_pred ccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCC---hhHHHhCC--cEEEEcCCcc-----chhh---
Q 004942 242 SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGL---MPELARRK--IKVLEDRGEP-----SFKT--- 308 (722)
Q Consensus 242 ~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l---~~el~~~g--I~Vl~~~~~~-----~~~~--- 308 (722)
..|.+||+- |+.-.=..+|+.|.+.|++|.++........ ..++...+ +.++..+... .+..
T Consensus 12 ~~k~vlITG-----as~giG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 86 (256)
T 3ezl_A 12 SQRIAYVTG-----GMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVGDWDSTKQAFDKVK 86 (256)
T ss_dssp -CEEEEETT-----TTSHHHHHHHHHHHHTTEEEEEEECTTCSSHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEEC-----CCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeeEEEecCCCCHHHHHHHHHHHH
Confidence 356666643 3333345789999999999988762322222 23334444 4444433322 1111
Q ss_pred --hcCccEEEECCch
Q 004942 309 --SMKADLVIAGSAV 321 (722)
Q Consensus 309 --~~k~DlVia~Sav 321 (722)
--++|++|.+..+
T Consensus 87 ~~~g~id~lv~~Ag~ 101 (256)
T 3ezl_A 87 AEVGEIDVLVNNAGI 101 (256)
T ss_dssp HHTCCEEEEEECCCC
T ss_pred HhcCCCCEEEECCCC
Confidence 1278999887644
No 201
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=24.96 E-value=4e+02 Score=24.37 Aligned_cols=79 Identities=16% Similarity=0.284 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEEEcCCC----CChhHHHhCCcEEEEcCCccchhh--------hcCccEEEECCchhhH
Q 004942 257 APLSMMELATELLSCGATVSAVVLSKRG----GLMPELARRKIKVLEDRGEPSFKT--------SMKADLVIAGSAVCAT 324 (722)
Q Consensus 257 aplsm~eLA~eL~s~G~~VsvV~ls~~g----~l~~el~~~gI~Vl~~~~~~~~~~--------~~k~DlVia~Sav~~~ 324 (722)
.|-.+.++.++...+|..|.++...... ....++...|+.|-.......|.. --+.|+|..-+.--..
T Consensus 11 dpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdvrtvedkedfrenireiwerypqldvvvivttddke 90 (162)
T 2l82_A 11 DPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDVRTVEDKEDFRENIREIWERYPQLDVVVIVTTDDKE 90 (162)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHCTTCCEEEEEECCCHH
T ss_pred CHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCceeeeccHHHHHHHHHHHHHhCCCCcEEEEEecCcHH
Confidence 5778999999999999999888732221 134677899999988765543333 2356777555555578
Q ss_pred hHHHHHHhccC
Q 004942 325 WIDQYITRFPA 335 (722)
Q Consensus 325 wi~~~i~~~~~ 335 (722)
||..+|.....
T Consensus 91 wikdfieeake 101 (162)
T 2l82_A 91 WIKDFIEEAKE 101 (162)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99888844333
No 202
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=24.90 E-value=1.2e+02 Score=28.17 Aligned_cols=62 Identities=15% Similarity=0.240 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCcc-chhhhcCccEEEECCch
Q 004942 257 APLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP-SFKTSMKADLVIAGSAV 321 (722)
Q Consensus 257 aplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~-~~~~~~k~DlVia~Sav 321 (722)
+...=..++++|.+.|++|.+++ +...-..++. .++.++..+... ....-.++|+||.+...
T Consensus 9 tG~iG~~l~~~L~~~g~~V~~~~--R~~~~~~~~~-~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~ 71 (221)
T 3ew7_A 9 TGRAGSRILEEAKNRGHEVTAIV--RNAGKITQTH-KDINILQKDIFDLTLSDLSDQNVVVDAYGI 71 (221)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEE--SCSHHHHHHC-SSSEEEECCGGGCCHHHHTTCSEEEECCCS
T ss_pred CchhHHHHHHHHHhCCCEEEEEE--cCchhhhhcc-CCCeEEeccccChhhhhhcCCCEEEECCcC
Confidence 34444568889999999999887 3332223333 678887755432 11334578999776543
No 203
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=24.76 E-value=1.9e+02 Score=26.80 Aligned_cols=68 Identities=16% Similarity=0.133 Sum_probs=47.7
Q ss_pred HHcCEEEEcCCCCCCCccHHHHHHHH---hCCCEEEc-CCCCh---hhhhccCccEEEECCCCccHHHHHHHHHHhhc
Q 004942 622 SAADVYVINSQGLGETFGRVTIEAMA---FGVPVLGT-DAGGT---KEIVEHNVTGLLHPPGHPGAQVLAQNLRYLLK 692 (722)
Q Consensus 622 saADv~V~pS~~l~EgfglviLEAMA---~GlPVVaT-d~GG~---~EIVe~g~tGlLvp~~d~~~e~LA~aI~~LL~ 692 (722)
...|++++-.. +.+.-|.-+++.+. ..+|||.- ..... .+.+..|..|++..|-++ ++|.++|..+++
T Consensus 42 ~~~dlvllD~~-lp~~~g~~~~~~lr~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~--~~L~~~i~~~~~ 116 (220)
T 1p2f_A 42 EAFHVVVLDVM-LPDYSGYEICRMIKETRPETWVILLTLLSDDESVLKGFEAGADDYVTKPFNP--EILLARVKRFLE 116 (220)
T ss_dssp SCCSEEEEESB-CSSSBHHHHHHHHHHHCTTSEEEEEESCCSHHHHHHHHHHTCSEEEESSCCH--HHHHHHHHHHHH
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCCCcEEEEEcCCCHHHHHHHHHcCCCEEEECCCCH--HHHHHHHHHHHc
Confidence 55699888665 34556777777664 46888763 33332 334567889999998888 999999988764
No 204
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=24.64 E-value=2.9e+02 Score=22.69 Aligned_cols=82 Identities=12% Similarity=0.131 Sum_probs=52.3
Q ss_pred EEeCCchhhHHHHHHH--cCEEEEcCCCCCCCccHHHHHHHHh-----CCCEEE-cCCCCh---hhhhccCccEEEECCC
Q 004942 608 MLWTPATTRVASLYSA--ADVYVINSQGLGETFGRVTIEAMAF-----GVPVLG-TDAGGT---KEIVEHNVTGLLHPPG 676 (722)
Q Consensus 608 V~f~G~~~dv~~lysa--ADv~V~pS~~l~EgfglviLEAMA~-----GlPVVa-Td~GG~---~EIVe~g~tGlLvp~~ 676 (722)
|.......+....+.. .|++++-.. +.+.-|.-+++.+.- .+|+|. |..... .+.++.|..+++..|-
T Consensus 32 v~~~~~~~~a~~~~~~~~~dlvi~D~~-l~~~~g~~l~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~ 110 (128)
T 1jbe_A 32 VEEAEDGVDALNKLQAGGYGFVISDWN-MPNMDGLELLKTIRAXXAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPF 110 (128)
T ss_dssp EEEESSHHHHHHHHTTCCCCEEEEESC-CSSSCHHHHHHHHHC--CCTTCCEEEEESSCCHHHHHHHHHTTCSEEEESSC
T ss_pred EEeeCCHHHHHHHHHhcCCCEEEEeCC-CCCCCHHHHHHHHHhhcccCCCcEEEEecCccHHHHHHHHHhCcCceeecCC
Confidence 4333333343344433 488887665 345567778887753 567765 443332 3455678899999998
Q ss_pred CccHHHHHHHHHHhhc
Q 004942 677 HPGAQVLAQNLRYLLK 692 (722)
Q Consensus 677 d~~~e~LA~aI~~LL~ 692 (722)
+. ++|.+.|..+++
T Consensus 111 ~~--~~l~~~i~~~~~ 124 (128)
T 1jbe_A 111 TA--ATLEEKLNKIFE 124 (128)
T ss_dssp CH--HHHHHHHHHHHH
T ss_pred CH--HHHHHHHHHHHH
Confidence 87 899998887753
No 205
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=24.61 E-value=3.3e+02 Score=23.32 Aligned_cols=83 Identities=14% Similarity=0.140 Sum_probs=52.7
Q ss_pred EEeCCchhhHHHHHHH--cCEEEEcCCCCCCCccHHHHHHHH-------hCCCEEEcCC-CCh---hhhhccCccEEEEC
Q 004942 608 MLWTPATTRVASLYSA--ADVYVINSQGLGETFGRVTIEAMA-------FGVPVLGTDA-GGT---KEIVEHNVTGLLHP 674 (722)
Q Consensus 608 V~f~G~~~dv~~lysa--ADv~V~pS~~l~EgfglviLEAMA-------~GlPVVaTd~-GG~---~EIVe~g~tGlLvp 674 (722)
+.......+..+.+.. .|++++-.. +.+.-|.-+++.+- -.+|||.... ... .+....|..+++..
T Consensus 41 v~~~~~~~~al~~~~~~~~dlvl~D~~-mp~~~g~~~~~~lr~~~~~~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~K 119 (143)
T 3m6m_D 41 VLCVNGAEQVLDAMAEEDYDAVIVDLH-MPGMNGLDMLKQLRVMQASGMRYTPVVVLSADVTPEAIRACEQAGARAFLAK 119 (143)
T ss_dssp EEEESSHHHHHHHHHHSCCSEEEEESC-CSSSCHHHHHHHHHHHHHTTCCCCCEEEEESCCCHHHHHHHHHTTCSEEEES
T ss_pred EEEeCCHHHHHHHHhcCCCCEEEEeCC-CCCCCHHHHHHHHHhchhccCCCCeEEEEeCCCCHHHHHHHHHcChhheeeC
Confidence 4333333344444443 488888665 45556777777764 1368876433 332 33456788999999
Q ss_pred CCCccHHHHHHHHHHhhcC
Q 004942 675 PGHPGAQVLAQNLRYLLKN 693 (722)
Q Consensus 675 ~~d~~~e~LA~aI~~LL~n 693 (722)
|-+. ++|.++|..++..
T Consensus 120 P~~~--~~L~~~l~~~~~~ 136 (143)
T 3m6m_D 120 PVVA--AKLLDTLADLAVS 136 (143)
T ss_dssp SCCH--HHHHHHHHHHC--
T ss_pred CCCH--HHHHHHHHHHHHh
Confidence 9988 9999999988653
No 206
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*
Probab=24.44 E-value=1.1e+02 Score=30.62 Aligned_cols=58 Identities=14% Similarity=0.122 Sum_probs=36.9
Q ss_pred HHHHHHHHhCCCEEEEEEEcCCCCCh---hHHHhCCcEEEEcCCcc--chhh-hcCccEEEECCc
Q 004942 262 MELATELLSCGATVSAVVLSKRGGLM---PELARRKIKVLEDRGEP--SFKT-SMKADLVIAGSA 320 (722)
Q Consensus 262 ~eLA~eL~s~G~~VsvV~ls~~g~l~---~el~~~gI~Vl~~~~~~--~~~~-~~k~DlVia~Sa 320 (722)
..++++|++.|++|.+++-... ... .++...|+.++..+... .+.. -..+|.||....
T Consensus 25 ~~l~~~L~~~g~~V~~l~R~~~-~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a~ 88 (318)
T 2r6j_A 25 NHMVKGSLKLGHPTYVFTRPNS-SKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVISALA 88 (318)
T ss_dssp HHHHHHHHHTTCCEEEEECTTC-SCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred HHHHHHHHHCCCcEEEEECCCC-chhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence 3467889999999988873221 222 23456789988765433 3433 236899977654
No 207
>1mio_A Nitrogenase molybdenum iron protein (alpha chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=24.03 E-value=44 Score=37.67 Aligned_cols=40 Identities=13% Similarity=-0.007 Sum_probs=27.9
Q ss_pred hhhhhccccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEc
Q 004942 235 DFARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLS 281 (722)
Q Consensus 235 ~f~~~~~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls 281 (722)
++...+..||++++.. +.....+++.|..+|.+|..+...
T Consensus 328 ~~~~~l~GKrv~i~~~-------~~~~~~l~~~l~ElGm~vv~~~t~ 367 (533)
T 1mio_A 328 YFKEKLQGKTACLYVG-------GSRSHTYMNMLKSFGVDSLVAGFE 367 (533)
T ss_dssp HHHHHHTTCEEEEEES-------SSHHHHHHHHHHHHTCEEEEEEES
T ss_pred HHHHHhCCCEEEEECC-------chHHHHHHHHHHHCCCEEEEEEec
Confidence 3444678889997643 224556777778899999888743
No 208
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=23.87 E-value=4.4e+02 Score=24.41 Aligned_cols=82 Identities=16% Similarity=0.107 Sum_probs=53.5
Q ss_pred EEeCCchhhHHHHHHH--cCEEEEcCCCCCCCccHHHHHHHH---hCCCEEEc-CCC---ChhhhhccCccEEEECCCCc
Q 004942 608 MLWTPATTRVASLYSA--ADVYVINSQGLGETFGRVTIEAMA---FGVPVLGT-DAG---GTKEIVEHNVTGLLHPPGHP 678 (722)
Q Consensus 608 V~f~G~~~dv~~lysa--ADv~V~pS~~l~EgfglviLEAMA---~GlPVVaT-d~G---G~~EIVe~g~tGlLvp~~d~ 678 (722)
|.......+....+.. .|++++-.. +.+.-|.-+++.+. ..+|||.- ... ...+.+..|..|++..|-++
T Consensus 34 v~~~~~~~~a~~~~~~~~~dlvllD~~-l~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~ 112 (233)
T 1ys7_A 34 VATAVDGAEALRSATENRPDAIVLDIN-MPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVL 112 (233)
T ss_dssp EEEESSHHHHHHHHHHSCCSEEEEESS-CSSSCHHHHHHHHHHTTCCCCEEEEECCCTTTCCCTTTTTTCSEEEESSCCH
T ss_pred EEEECCHHHHHHHHHhCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCCCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCH
Confidence 4433333344444443 488888765 35556777777774 36888763 322 23455677889999999888
Q ss_pred cHHHHHHHHHHhhc
Q 004942 679 GAQVLAQNLRYLLK 692 (722)
Q Consensus 679 ~~e~LA~aI~~LL~ 692 (722)
++|..+|..++.
T Consensus 113 --~~L~~~i~~~~~ 124 (233)
T 1ys7_A 113 --AELVARVKALLR 124 (233)
T ss_dssp --HHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHh
Confidence 899999988764
No 209
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=23.77 E-value=1.9e+02 Score=28.66 Aligned_cols=62 Identities=13% Similarity=0.172 Sum_probs=37.1
Q ss_pred CcHHHHHHHHHHHHHh--CCCEEEEEEEcCCCC-ChhHHHhCCcEEEEcCCcc------------chhhhcCccEEEEC
Q 004942 255 TGAPLSMMELATELLS--CGATVSAVVLSKRGG-LMPELARRKIKVLEDRGEP------------SFKTSMKADLVIAG 318 (722)
Q Consensus 255 gGaplsm~eLA~eL~s--~G~~VsvV~ls~~g~-l~~el~~~gI~Vl~~~~~~------------~~~~~~k~DlVia~ 318 (722)
+|.. +..|.....+ ..++|.+|...+++. ......+.||+++...... ...++.+||+|++-
T Consensus 12 ~Gsn--l~ali~~~~~~~l~~eI~~Visn~~~a~v~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~a 88 (211)
T 3p9x_A 12 SGTN--AEAIIQSQKAGQLPCEVALLITDKPGAKVVERVKVHEIPVCALDPKTYPSKEAYEIEVVQQLKEKQIDFVVLA 88 (211)
T ss_dssp TCHH--HHHHHHHHHTTCCSSEEEEEEESCSSSHHHHHHHTTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEES
T ss_pred CchH--HHHHHHHHHcCCCCcEEEEEEECCCCcHHHHHHHHcCCCEEEeChhhcCchhhhHHHHHHHHHhcCCCEEEEe
Confidence 4554 4445554432 336888887655443 3345568999998754321 23347899999554
No 210
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*
Probab=23.75 E-value=1.3e+02 Score=29.18 Aligned_cols=73 Identities=12% Similarity=0.114 Sum_probs=39.2
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCC--cEEEEcCCcc--chhh--------hcC
Q 004942 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRK--IKVLEDRGEP--SFKT--------SMK 311 (722)
Q Consensus 244 killI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~g--I~Vl~~~~~~--~~~~--------~~k 311 (722)
|.++|+- |+.-.=..+|+.|.+.|++|.++.-.....+..++...+ +.++..+... .+.. .-+
T Consensus 8 k~vlVTG-----as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 82 (249)
T 2ew8_A 8 KLAVITG-----GANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTFGR 82 (249)
T ss_dssp CEEEEET-----TTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CEEEEeC-----CCcHHHHHHHHHHHHCCCEEEEEcCCchhHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHcCC
Confidence 4556653 233334567889999999998876221122223344444 3444433222 1211 237
Q ss_pred ccEEEECCch
Q 004942 312 ADLVIAGSAV 321 (722)
Q Consensus 312 ~DlVia~Sav 321 (722)
+|+++.+..+
T Consensus 83 id~lv~nAg~ 92 (249)
T 2ew8_A 83 CDILVNNAGI 92 (249)
T ss_dssp CCEEEECCCC
T ss_pred CCEEEECCCC
Confidence 8999887643
No 211
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=23.73 E-value=2.9e+02 Score=28.69 Aligned_cols=70 Identities=13% Similarity=0.098 Sum_probs=41.2
Q ss_pred cEEEEEeCCCCCCcHHHHHHHHHHHHHh--CCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCcc-----------chhhh
Q 004942 243 RKFILIFHELSMTGAPLSMMELATELLS--CGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP-----------SFKTS 309 (722)
Q Consensus 243 kkillI~hels~gGaplsm~eLA~eL~s--~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~-----------~~~~~ 309 (722)
+|++++.. ..|.. +..|.....+ ..++|.+|...++ .......+.||+++..+... ...++
T Consensus 96 ~ri~vl~S---g~g~~--l~~ll~~~~~g~l~~~i~~Visn~~-~~~~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~ 169 (292)
T 3lou_A 96 PKVLIMVS---KLEHC--LADLLFRWKMGELKMDIVGIVSNHP-DFAPLAAQHGLPFRHFPITADTKAQQEAQWLDVFET 169 (292)
T ss_dssp CEEEEEEC---SCCHH--HHHHHHHHHHTSSCCEEEEEEESSS-TTHHHHHHTTCCEEECCCCSSCHHHHHHHHHHHHHH
T ss_pred CEEEEEEc---CCCcC--HHHHHHHHHcCCCCcEEEEEEeCcH-HHHHHHHHcCCCEEEeCCCcCCHHHHHHHHHHHHHH
Confidence 45554432 23543 4445444433 3578988885543 45555678999999865321 23347
Q ss_pred cCccEEEEC
Q 004942 310 MKADLVIAG 318 (722)
Q Consensus 310 ~k~DlVia~ 318 (722)
.+||+|++-
T Consensus 170 ~~~Dlivla 178 (292)
T 3lou_A 170 SGAELVILA 178 (292)
T ss_dssp HTCSEEEES
T ss_pred hCCCEEEec
Confidence 899999443
No 212
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}
Probab=23.62 E-value=77 Score=30.55 Aligned_cols=72 Identities=15% Similarity=0.170 Sum_probs=39.9
Q ss_pred cEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCC----ChhHHHhCC--cEEEEcCCcc--chhh------
Q 004942 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG----LMPELARRK--IKVLEDRGEP--SFKT------ 308 (722)
Q Consensus 243 kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~----l~~el~~~g--I~Vl~~~~~~--~~~~------ 308 (722)
.+.++|+ ||+.-.=..+|+.|.+.|++|.++. +... +..++...+ +.++..+... .+..
T Consensus 13 ~k~vlIt-----GasggiG~~la~~l~~~G~~V~~~~--r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 85 (260)
T 3awd_A 13 NRVAIVT-----GGAQNIGLACVTALAEAGARVIIAD--LDEAMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVH 85 (260)
T ss_dssp TCEEEEE-----TTTSHHHHHHHHHHHHTTCEEEEEE--SCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCEEEEe-----CCCchHHHHHHHHHHHCCCEEEEEe--CCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHH
Confidence 4556665 3333344568899999999988876 2221 122333333 4455443322 2221
Q ss_pred --hcCccEEEECCch
Q 004942 309 --SMKADLVIAGSAV 321 (722)
Q Consensus 309 --~~k~DlVia~Sav 321 (722)
.-++|+||.+..+
T Consensus 86 ~~~~~id~vi~~Ag~ 100 (260)
T 3awd_A 86 EQEGRVDILVACAGI 100 (260)
T ss_dssp HHHSCCCEEEECCCC
T ss_pred HHcCCCCEEEECCCC
Confidence 1278999887653
No 213
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=23.59 E-value=1.1e+02 Score=33.01 Aligned_cols=72 Identities=15% Similarity=0.174 Sum_probs=43.2
Q ss_pred cccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCccchhhhcCccEEEECCc
Q 004942 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPSFKTSMKADLVIAGSA 320 (722)
Q Consensus 241 ~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~~~~~~~k~DlVia~Sa 320 (722)
..++|++| ..||+.++ .|+.|.++||+|++.=..........+. .|+++..-....... . .+|+|+....
T Consensus 4 ~~~~v~vi----G~G~~G~~---~a~~l~~~G~~v~~~D~~~~~~~~~~l~-~G~~~~~g~~~~~~~-~-~~d~vV~s~g 73 (439)
T 2x5o_A 4 QGKNVVII----GLGLTGLS---CVDFFLARGVTPRVMDTRMTPPGLDKLP-EAVERHTGSLNDEWL-M-AADLIVASPG 73 (439)
T ss_dssp TTCCEEEE----CCHHHHHH---HHHHHHTTTCCCEEEESSSSCTTGGGSC-TTSCEEESSCCHHHH-H-TCSEEEECTT
T ss_pred CCCEEEEE----eecHHHHH---HHHHHHhCCCEEEEEECCCCcchhHHhh-CCCEEEECCCcHHHh-c-cCCEEEeCCC
Confidence 34666654 34555444 4788899999998875322222224456 799987533222222 2 6899988876
Q ss_pred hh
Q 004942 321 VC 322 (722)
Q Consensus 321 v~ 322 (722)
+.
T Consensus 74 i~ 75 (439)
T 2x5o_A 74 IA 75 (439)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 214
>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A* 1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A* 3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*
Probab=23.53 E-value=91 Score=34.67 Aligned_cols=77 Identities=14% Similarity=0.153 Sum_probs=46.3
Q ss_pred hhhhhccccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCC-CChhHHHh---CCcEEEEcCCcc----ch
Q 004942 235 DFARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRG-GLMPELAR---RKIKVLEDRGEP----SF 306 (722)
Q Consensus 235 ~f~~~~~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g-~l~~el~~---~gI~Vl~~~~~~----~~ 306 (722)
++..++..||+++.. | +.....+++.|..+|.+|..+...... .-..++.. .+..++.. .+. .+
T Consensus 341 ~~~~~l~GKrv~i~g------~-~~~~~~la~~L~ElGm~vv~~gt~~~~~~d~~~l~~~~~~~~~i~~~-~d~~el~~~ 412 (492)
T 3u7q_A 341 KYRPRLEGKRVMLYI------G-GLRPRHVIGAYEDLGMEVVGTGYEFAHNDDYDRTMKEMGDSTLLYDD-VTGYEFEEF 412 (492)
T ss_dssp HHHHHHTTCEEEECB------S-SSHHHHTHHHHHTTTCEEEEEEESSCCHHHHHHHHTTSCTTCEEEES-CBHHHHHHH
T ss_pred HHHHHhCCCEEEEEC------C-CchHHHHHHHHHHCCCEEEEEeCCCCCHHHHHHHHHhCCCCcEEEcC-CCHHHHHHH
Confidence 355677889988632 2 235677888899999999886633221 11122221 23344443 332 45
Q ss_pred hhhcCccEEEECC
Q 004942 307 KTSMKADLVIAGS 319 (722)
Q Consensus 307 ~~~~k~DlVia~S 319 (722)
..+.+|||+|.++
T Consensus 413 i~~~~pDL~ig~~ 425 (492)
T 3u7q_A 413 VKRIKPDLIGSGI 425 (492)
T ss_dssp HHHHCCSEEEECH
T ss_pred HHhcCCcEEEeCc
Confidence 5578999998874
No 215
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}
Probab=23.37 E-value=1.2e+02 Score=31.68 Aligned_cols=74 Identities=11% Similarity=-0.018 Sum_probs=42.1
Q ss_pred cEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCC---------ChhHHHhCCcEEEEcCCcc-------ch
Q 004942 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG---------LMPELARRKIKVLEDRGEP-------SF 306 (722)
Q Consensus 243 kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~---------l~~el~~~gI~Vl~~~~~~-------~~ 306 (722)
.|.++|+- |+.-.=..+|+.|.+.|++|.++.-..... ...++...+.++.....+. .+
T Consensus 45 gk~vlVTG-----as~GIG~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~ 119 (346)
T 3kvo_A 45 GCTVFITG-----ASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQISAA 119 (346)
T ss_dssp TCEEEEET-----TTSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCHHHHHHH
T ss_pred CCEEEEeC-----CChHHHHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHH
Confidence 35566654 222233568899999999998887332211 1234455565655443333 12
Q ss_pred hh-----hcCccEEEECCch
Q 004942 307 KT-----SMKADLVIAGSAV 321 (722)
Q Consensus 307 ~~-----~~k~DlVia~Sav 321 (722)
.. .-++|++|.+..+
T Consensus 120 ~~~~~~~~g~iDilVnnAG~ 139 (346)
T 3kvo_A 120 VEKAIKKFGGIDILVNNASA 139 (346)
T ss_dssp HHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHcCCCCEEEECCCC
Confidence 21 1389999888654
No 216
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}
Probab=23.32 E-value=70 Score=32.00 Aligned_cols=73 Identities=11% Similarity=0.021 Sum_probs=39.5
Q ss_pred ccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCC-ChhHHHh--CCcEEEEcCCcc-----chhh-----
Q 004942 242 SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG-LMPELAR--RKIKVLEDRGEP-----SFKT----- 308 (722)
Q Consensus 242 ~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~-l~~el~~--~gI~Vl~~~~~~-----~~~~----- 308 (722)
+.|+++|+- |+.-.=..+|+.|.+.|++|.++. .... +...... ..+.++..+... .+..
T Consensus 26 ~~k~vlVTG-----as~GIG~aia~~l~~~G~~V~~~~--r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 98 (277)
T 4dqx_A 26 NQRVCIVTG-----GGSGIGRATAELFAKNGAYVVVAD--VNEDAAVRVANEIGSKAFGVRVDVSSAKDAESMVEKTTAK 98 (277)
T ss_dssp TTCEEEEET-----TTSHHHHHHHHHHHHTTCEEEEEE--SSHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEC-----CCcHHHHHHHHHHHHCCCEEEEEe--CCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 346777754 222334568899999999998876 2222 2111222 234444433322 1111
Q ss_pred hcCccEEEECCch
Q 004942 309 SMKADLVIAGSAV 321 (722)
Q Consensus 309 ~~k~DlVia~Sav 321 (722)
.-++|+++.+..+
T Consensus 99 ~g~iD~lv~nAg~ 111 (277)
T 4dqx_A 99 WGRVDVLVNNAGF 111 (277)
T ss_dssp HSCCCEEEECCCC
T ss_pred cCCCCEEEECCCc
Confidence 1379999888653
No 217
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Probab=23.28 E-value=3e+02 Score=27.64 Aligned_cols=65 Identities=17% Similarity=0.116 Sum_probs=38.6
Q ss_pred cHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHH----------hCCcEEEEcCCcc--chhh-hcCccEEEECCch
Q 004942 256 GAPLSMMELATELLSCGATVSAVVLSKRGGLMPELA----------RRKIKVLEDRGEP--SFKT-SMKADLVIAGSAV 321 (722)
Q Consensus 256 Gaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~----------~~gI~Vl~~~~~~--~~~~-~~k~DlVia~Sav 321 (722)
|+...-..|+++|.+.|++|.+++-...+ ....+. ..++.++..+... .+.. -.++|+||...+.
T Consensus 35 atG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~~ 112 (352)
T 1sb8_A 35 VAGFIGSNLLETLLKLDQKVVGLDNFATG-HQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGVDYVLHQAAL 112 (352)
T ss_dssp TTSHHHHHHHHHHHHTTCEEEEEECCSSC-CHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTCSEEEECCSC
T ss_pred CCcHHHHHHHHHHHHCCCEEEEEeCCCcc-chhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCCCEEEECCcc
Confidence 33444556888999999999988733221 111221 2577777654432 3333 2379999877654
No 218
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}
Probab=23.15 E-value=1.3e+02 Score=30.21 Aligned_cols=66 Identities=17% Similarity=0.104 Sum_probs=37.9
Q ss_pred CcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHh-CCcEEEEcCCcc--chhh---hcCccEEEECCch
Q 004942 255 TGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELAR-RKIKVLEDRGEP--SFKT---SMKADLVIAGSAV 321 (722)
Q Consensus 255 gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~-~gI~Vl~~~~~~--~~~~---~~k~DlVia~Sav 321 (722)
||+...-..|++.|.+.|++|.++.-... .....+.. .++.++..+... .+.. ..++|+||.+.+.
T Consensus 28 GatG~iG~~l~~~L~~~g~~V~~~~r~~~-~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~vih~A~~ 99 (333)
T 2q1w_A 28 GICGQIGSHIAELLLERGDKVVGIDNFAT-GRREHLKDHPNLTFVEGSIADHALVNQLIGDLQPDAVVHTAAS 99 (333)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEECCSS-CCGGGSCCCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECCCC
T ss_pred CCccHHHHHHHHHHHHCCCEEEEEECCCc-cchhhHhhcCCceEEEEeCCCHHHHHHHHhccCCcEEEECcee
Confidence 34444556678899999999998873322 22222221 366666644332 2222 3459999877543
No 219
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}
Probab=22.94 E-value=1e+02 Score=30.81 Aligned_cols=74 Identities=18% Similarity=0.149 Sum_probs=41.0
Q ss_pred cEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCC------CC---hhHHHhCCcEEEEcCCcc-------ch
Q 004942 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRG------GL---MPELARRKIKVLEDRGEP-------SF 306 (722)
Q Consensus 243 kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g------~l---~~el~~~gI~Vl~~~~~~-------~~ 306 (722)
.|.++|+- |+.-.=..+|+.|.+.|++|.++.-.... .+ ..++...+.++.....+. .+
T Consensus 9 ~k~vlVTG-----as~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~ 83 (285)
T 3sc4_A 9 GKTMFISG-----GSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRDGDAVAAA 83 (285)
T ss_dssp TCEEEEES-----CSSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTSHHHHHHH
T ss_pred CCEEEEEC-----CCCHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHH
Confidence 45666754 22223346889999999999887733221 11 233444454554433332 12
Q ss_pred hh-----hcCccEEEECCch
Q 004942 307 KT-----SMKADLVIAGSAV 321 (722)
Q Consensus 307 ~~-----~~k~DlVia~Sav 321 (722)
.. .-++|++|.+..+
T Consensus 84 ~~~~~~~~g~id~lvnnAg~ 103 (285)
T 3sc4_A 84 VAKTVEQFGGIDICVNNASA 103 (285)
T ss_dssp HHHHHHHHSCCSEEEECCCC
T ss_pred HHHHHHHcCCCCEEEECCCC
Confidence 22 1289999888654
No 220
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1
Probab=22.71 E-value=78 Score=34.57 Aligned_cols=65 Identities=22% Similarity=0.197 Sum_probs=44.9
Q ss_pred CCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCccchhhhcCccEEEECCchh
Q 004942 252 LSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPSFKTSMKADLVIAGSAVC 322 (722)
Q Consensus 252 ls~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~~~~~~~k~DlVia~Sav~ 322 (722)
..++|...+-+ |+.|.+.|++|++.=. ........|...|+++..- ...... ..+|+|+...++.
T Consensus 18 i~I~G~G~sgl--A~~l~~~G~~V~g~D~-~~~~~~~~L~~~gi~~~~g-~~~~~~--~~~d~vV~spgi~ 82 (469)
T 1j6u_A 18 VGIGGIGMSAV--ALHEFSNGNDVYGSNI-EETERTAYLRKLGIPIFVP-HSADNW--YDPDLVIKTPAVR 82 (469)
T ss_dssp ETTTSHHHHHH--HHHHHHTTCEEEEECS-SCCHHHHHHHHTTCCEESS-CCTTSC--CCCSEEEECTTCC
T ss_pred EEEcccCHHHH--HHHHHhCCCEEEEEcC-CCCHHHHHHHhCCCEEECC-CCHHHC--CCCCEEEECCCcC
Confidence 36889888764 9999999999987642 2223445678899998752 211111 2689999988764
No 221
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=22.45 E-value=80 Score=31.05 Aligned_cols=70 Identities=23% Similarity=0.263 Sum_probs=41.7
Q ss_pred hhHHHHHHHcCEEEEcCCCCCCCccH--HHHHHHHhCCCEEEcCCCC-hhhhhccC-ccE---------EEECCCCccHH
Q 004942 615 TRVASLYSAADVYVINSQGLGETFGR--VTIEAMAFGVPVLGTDAGG-TKEIVEHN-VTG---------LLHPPGHPGAQ 681 (722)
Q Consensus 615 ~dv~~lysaADv~V~pS~~l~Egfgl--viLEAMA~GlPVVaTd~GG-~~EIVe~g-~tG---------lLvp~~d~~~e 681 (722)
++-.-+...||.+|.-.- ++|. .+.||+..++||+.-+..| ..+.+.+- ..| ++.-.+++ +
T Consensus 110 ~Rk~~m~~~sda~IvlpG----G~GTL~E~~eal~~~kPV~lln~~g~w~~~l~~~~~~G~fi~~~~~~~i~~~~~~--e 183 (195)
T 1rcu_A 110 MRSFVLLRNADVVVSIGG----EIGTAIEILGAYALGKPVILLRGTGGWTDRISQVLIDGKYLDNRRIVEIHQAWTV--E 183 (195)
T ss_dssp HHHHHHHTTCSEEEEESC----CHHHHHHHHHHHHTTCCEEEETTSCHHHHHGGGGCBTTTBSSTTCCSCEEEESSH--H
T ss_pred HHHHHHHHhCCEEEEecC----CCcHHHHHHHHHhcCCCEEEECCCCccHHHHHHHHHcCCcCCHHHcCeEEEeCCH--H
Confidence 455566777899877552 3553 5678889999999997544 34344221 122 33333455 6
Q ss_pred HHHHHHHHh
Q 004942 682 VLAQNLRYL 690 (722)
Q Consensus 682 ~LA~aI~~L 690 (722)
++.+.|..+
T Consensus 184 e~~~~l~~~ 192 (195)
T 1rcu_A 184 EAVQIIEQI 192 (195)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHHH
Confidence 666666543
No 222
>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*
Probab=22.44 E-value=1.2e+02 Score=30.39 Aligned_cols=57 Identities=18% Similarity=0.126 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCccchhh-----hcCccEEEECCch
Q 004942 260 SMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPSFKT-----SMKADLVIAGSAV 321 (722)
Q Consensus 260 sm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~~~~~-----~~k~DlVia~Sav 321 (722)
.=..+|++|...|++|+++... ..+.. ..|+.++.......+.. .-++|++|.+.++
T Consensus 36 iG~aiA~~~~~~Ga~V~l~~~~--~~l~~---~~g~~~~dv~~~~~~~~~v~~~~~~~Dili~~Aav 97 (226)
T 1u7z_A 36 MGFAIAAAAARRGANVTLVSGP--VSLPT---PPFVKRVDVMTALEMEAAVNASVQQQNIFIGCAAV 97 (226)
T ss_dssp HHHHHHHHHHHTTCEEEEEECS--CCCCC---CTTEEEEECCSHHHHHHHHHHHGGGCSEEEECCBC
T ss_pred HHHHHHHHHHHCCCEEEEEECC--ccccc---CCCCeEEccCcHHHHHHHHHHhcCCCCEEEECCcc
Confidence 3455789999999999998622 22211 23556555444332222 2357887776554
No 223
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0
Probab=22.24 E-value=1.9e+02 Score=27.62 Aligned_cols=72 Identities=13% Similarity=0.096 Sum_probs=40.0
Q ss_pred cEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCC----ChhHHHh---CCcEEEEcCCcc-------chhh
Q 004942 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG----LMPELAR---RKIKVLEDRGEP-------SFKT 308 (722)
Q Consensus 243 kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~----l~~el~~---~gI~Vl~~~~~~-------~~~~ 308 (722)
.|.++|+- |+.-.=..+|+.|.+.|++|.++. +... ...++.. ..+.++....+. .+..
T Consensus 14 ~k~vlITG-----as~gIG~~ia~~l~~~G~~V~~~~--r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~ 86 (247)
T 3i1j_A 14 GRVILVTG-----AARGIGAAAARAYAAHGASVVLLG--RTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAA 86 (247)
T ss_dssp TCEEEESS-----TTSHHHHHHHHHHHHTTCEEEEEE--SCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHH
T ss_pred CCEEEEeC-----CCChHHHHHHHHHHHCCCEEEEEe--cCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHH
Confidence 45555643 223334567899999999988776 3221 1223332 345566655422 1111
Q ss_pred -----hcCccEEEECCch
Q 004942 309 -----SMKADLVIAGSAV 321 (722)
Q Consensus 309 -----~~k~DlVia~Sav 321 (722)
.-++|++|.+..+
T Consensus 87 ~~~~~~g~id~lv~nAg~ 104 (247)
T 3i1j_A 87 RVEHEFGRLDGLLHNASI 104 (247)
T ss_dssp HHHHHHSCCSEEEECCCC
T ss_pred HHHHhCCCCCEEEECCcc
Confidence 1278999887654
No 224
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Probab=22.13 E-value=1.7e+02 Score=27.69 Aligned_cols=61 Identities=20% Similarity=0.123 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHH--hCCcEEEEcCCcc--chhh---h-cCccEEEECCch
Q 004942 259 LSMMELATELLSCGATVSAVVLSKRGGLMPELA--RRKIKVLEDRGEP--SFKT---S-MKADLVIAGSAV 321 (722)
Q Consensus 259 lsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~--~~gI~Vl~~~~~~--~~~~---~-~k~DlVia~Sav 321 (722)
-.=..+|++|.+.|++|.++. +...-..++. ..++.++..+... .+.. . -++|+||.+...
T Consensus 18 giG~~~a~~l~~~G~~V~~~~--r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~Ag~ 86 (244)
T 1cyd_A 18 GIGRDTVKALHASGAKVVAVT--RTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIGPVDLLVNNAAL 86 (244)
T ss_dssp HHHHHHHHHHHHTTCEEEEEE--SCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCSEEEECCCC
T ss_pred hHHHHHHHHHHHCCCEEEEEe--CCHHHHHHHHHhccCCCcEEecCCCHHHHHHHHHHcCCCCEEEECCcc
Confidence 334567889999999988776 3222122222 1367776544322 2222 2 257999887543
No 225
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Probab=22.07 E-value=1.3e+02 Score=30.36 Aligned_cols=72 Identities=14% Similarity=0.075 Sum_probs=40.2
Q ss_pred cEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCC----ChhHHHhCCcEE--EEcCCcc--c---hhh---
Q 004942 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG----LMPELARRKIKV--LEDRGEP--S---FKT--- 308 (722)
Q Consensus 243 kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~----l~~el~~~gI~V--l~~~~~~--~---~~~--- 308 (722)
.|.++|+- |+.-.=..+|+.|.+.|++|.++. +... ...++...+.++ +..+... . +..
T Consensus 31 gk~vlVTG-----as~gIG~~la~~l~~~G~~V~~~~--r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 103 (301)
T 3tjr_A 31 GRAAVVTG-----GASGIGLATATEFARRGARLVLSD--VDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAF 103 (301)
T ss_dssp TCEEEEET-----TTSHHHHHHHHHHHHTTCEEEEEE--SCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCEEEEeC-----CCCHHHHHHHHHHHHCCCEEEEEE--CCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHH
Confidence 35666653 333334568999999999988876 3222 223344444444 4433222 1 111
Q ss_pred --hcCccEEEECCch
Q 004942 309 --SMKADLVIAGSAV 321 (722)
Q Consensus 309 --~~k~DlVia~Sav 321 (722)
.-++|++|.+..+
T Consensus 104 ~~~g~id~lvnnAg~ 118 (301)
T 3tjr_A 104 RLLGGVDVVFSNAGI 118 (301)
T ss_dssp HHHSSCSEEEECCCC
T ss_pred HhCCCCCEEEECCCc
Confidence 1379999888654
No 226
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A
Probab=21.99 E-value=1.6e+02 Score=29.19 Aligned_cols=65 Identities=12% Similarity=0.126 Sum_probs=35.6
Q ss_pred CcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHH-------hCCcEEE-EcCCc-c-chhhh-cCccEEEECCch
Q 004942 255 TGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELA-------RRKIKVL-EDRGE-P-SFKTS-MKADLVIAGSAV 321 (722)
Q Consensus 255 gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~-------~~gI~Vl-~~~~~-~-~~~~~-~k~DlVia~Sav 321 (722)
||+...-..|++.|.+.|++|.+++ +...-...+. ..++.++ ..+.. . .+... .++|+||.+.+.
T Consensus 18 GatG~iG~~l~~~L~~~g~~V~~~~--r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih~A~~ 93 (342)
T 1y1p_A 18 GANGFVASHVVEQLLEHGYKVRGTA--RSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVAHIASV 93 (342)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEE--SSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEEECCCC
T ss_pred CCccHHHHHHHHHHHHCCCEEEEEe--CCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHcCCCEEEEeCCC
Confidence 3444555667889999999998887 2211111111 1356665 33221 1 23232 278999776543
No 227
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=21.95 E-value=35 Score=37.85 Aligned_cols=79 Identities=16% Similarity=0.193 Sum_probs=44.4
Q ss_pred hhhhhccccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCC-ChhHHH-hCC--cEEEEcCCcc---chh
Q 004942 235 DFARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG-LMPELA-RRK--IKVLEDRGEP---SFK 307 (722)
Q Consensus 235 ~f~~~~~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~-l~~el~-~~g--I~Vl~~~~~~---~~~ 307 (722)
++...+..||+++... +.....|++.|.++|.+|..+....... ....+. ..+ ..++...... .+.
T Consensus 325 ~~~~~l~GKrv~i~~~-------~~~~~~l~~~L~ElGmevv~~gt~~~~~~d~~~~~~~l~~~~~i~~d~d~~el~~~i 397 (483)
T 3pdi_A 325 PWRARLEGKRVLLYTG-------GVKSWSVVSALQDLGMKVVATGTKKSTEEDKARIRELMGDDVKMLDEGNARVLLKTV 397 (483)
T ss_dssp HHHHHHTTCEEEEECS-------SSCHHHHHHHHHHHTCEEEEECBSSSCHHHHHHHHHHSCSSCCBCCSCSHHHHHHHH
T ss_pred HHHHHhcCCEEEEECC-------CchHHHHHHHHHHCCCEEEEEecCCCCHHHHHHHHHhcCCCCEEEeCCCHHHHHHHH
Confidence 4556778899987533 2234567777888999998765322111 111121 222 2233321111 455
Q ss_pred hhcCccEEEECCc
Q 004942 308 TSMKADLVIAGSA 320 (722)
Q Consensus 308 ~~~k~DlVia~Sa 320 (722)
.+.+|||+|.++.
T Consensus 398 ~~~~pDL~ig~~~ 410 (483)
T 3pdi_A 398 DEYQADILIAGGR 410 (483)
T ss_dssp HHTTCSEEECCGG
T ss_pred HhcCCCEEEECCc
Confidence 5789999988864
No 228
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=21.90 E-value=3.6e+02 Score=22.68 Aligned_cols=85 Identities=8% Similarity=0.126 Sum_probs=52.7
Q ss_pred cEEeCCchhhHHHHHHH--cCEEEEcCCCCCCCccHHHHHHHH---hCCCEEE-cCCCCh---hhhhccCccEEEECCCC
Q 004942 607 AMLWTPATTRVASLYSA--ADVYVINSQGLGETFGRVTIEAMA---FGVPVLG-TDAGGT---KEIVEHNVTGLLHPPGH 677 (722)
Q Consensus 607 ~V~f~G~~~dv~~lysa--ADv~V~pS~~l~EgfglviLEAMA---~GlPVVa-Td~GG~---~EIVe~g~tGlLvp~~d 677 (722)
.|.......+...++.. .|++++-. +.+.-|.-+++.+. ..+|||. |..... .+.+..|..+++..|-+
T Consensus 30 ~v~~~~~~~~a~~~l~~~~~dlvi~d~--~~~~~g~~~~~~l~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~ 107 (142)
T 2qxy_A 30 NVIWAKNEQEAFTFLRREKIDLVFVDV--FEGEESLNLIRRIREEFPDTKVAVLSAYVDKDLIINSVKAGAVDYILKPFR 107 (142)
T ss_dssp EEEEESSHHHHHHHHTTSCCSEEEEEC--TTTHHHHHHHHHHHHHCTTCEEEEEESCCCHHHHHHHHHHTCSCEEESSCC
T ss_pred EEEEECCHHHHHHHHhccCCCEEEEeC--CCCCcHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCcceeEeCCCC
Confidence 34444433444444443 48887765 24444555666653 3578776 444333 33456688899999888
Q ss_pred ccHHHHHHHHHHhhcCHH
Q 004942 678 PGAQVLAQNLRYLLKNPS 695 (722)
Q Consensus 678 ~~~e~LA~aI~~LL~np~ 695 (722)
. +.|.+.|..++....
T Consensus 108 ~--~~l~~~i~~~~~~~~ 123 (142)
T 2qxy_A 108 L--DYLLERVKKIISSTP 123 (142)
T ss_dssp H--HHHHHHHHHHHHC--
T ss_pred H--HHHHHHHHHHHhhcc
Confidence 8 999999999887543
No 229
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}
Probab=21.86 E-value=1.4e+02 Score=29.42 Aligned_cols=33 Identities=18% Similarity=0.091 Sum_probs=22.2
Q ss_pred cEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEE
Q 004942 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVL 280 (722)
Q Consensus 243 kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~l 280 (722)
.|+++|+- |+.-.=..+|+.|.+.|++|.++.-
T Consensus 6 ~k~~lVTG-----as~GIG~aia~~la~~G~~V~~~~r 38 (274)
T 3e03_A 6 GKTLFITG-----ASRGIGLAIALRAARDGANVAIAAK 38 (274)
T ss_dssp TCEEEEET-----TTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CcEEEEEC-----CCChHHHHHHHHHHHCCCEEEEEec
Confidence 45666654 2222234678999999999988873
No 230
>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}
Probab=21.83 E-value=1.5e+02 Score=29.49 Aligned_cols=65 Identities=15% Similarity=0.079 Sum_probs=38.8
Q ss_pred CcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCcc--chhh---hcCccEEEECCch
Q 004942 255 TGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP--SFKT---SMKADLVIAGSAV 321 (722)
Q Consensus 255 gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~--~~~~---~~k~DlVia~Sav 321 (722)
||+...-..|++.|.+.|++|.++.-... .....+. .++.++..+... .+.. ..++|+||...+.
T Consensus 8 GatG~iG~~l~~~L~~~g~~V~~~~r~~~-~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~d~vih~a~~ 77 (330)
T 2c20_A 8 GGAGYIGSHAVKKLVDEGLSVVVVDNLQT-GHEDAIT-EGAKFYNGDLRDKAFLRDVFTQENIEAVMHFAAD 77 (330)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEECCSS-CCGGGSC-TTSEEEECCTTCHHHHHHHHHHSCEEEEEECCCC
T ss_pred CCCcHHHHHHHHHHHhCCCEEEEEeCCCc-CchhhcC-CCcEEEECCCCCHHHHHHHHhhcCCCEEEECCcc
Confidence 34445556788899999999998873222 2222222 267777654432 2333 3379999877554
No 231
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=21.69 E-value=1.3e+02 Score=30.28 Aligned_cols=39 Identities=23% Similarity=0.303 Sum_probs=28.4
Q ss_pred EEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCC
Q 004942 247 LIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG 285 (722)
Q Consensus 247 lI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~ 285 (722)
+++..-...|=.-.++.+|.+|.+.|+.|.++.....+.
T Consensus 9 I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~ 47 (228)
T 2r8r_A 9 VFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGR 47 (228)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCC
Confidence 333444455667778999999999999998888655443
No 232
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Probab=21.63 E-value=1.2e+02 Score=29.07 Aligned_cols=71 Identities=10% Similarity=0.105 Sum_probs=39.2
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHh-CCCEEEEEEEcCCCC----ChhHHHhC--CcEEEEcCCcc--ch---hhh--
Q 004942 244 KFILIFHELSMTGAPLSMMELATELLS-CGATVSAVVLSKRGG----LMPELARR--KIKVLEDRGEP--SF---KTS-- 309 (722)
Q Consensus 244 killI~hels~gGaplsm~eLA~eL~s-~G~~VsvV~ls~~g~----l~~el~~~--gI~Vl~~~~~~--~~---~~~-- 309 (722)
+.++|+ ||+.-.=..+|+.|.+ .|++|.++. +... ...++... .+.++..+... .+ ...
T Consensus 5 k~vlIT-----GasggIG~~~a~~L~~~~g~~V~~~~--r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 77 (276)
T 1wma_A 5 HVALVT-----GGNKGIGLAIVRDLCRLFSGDVVLTA--RDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLR 77 (276)
T ss_dssp CEEEES-----SCSSHHHHHHHHHHHHHSSSEEEEEE--SSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHH
T ss_pred CEEEEe-----CCCcHHHHHHHHHHHHhcCCeEEEEe--CChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHH
Confidence 455564 3333344567889999 999988876 2221 12233332 35555544332 11 111
Q ss_pred ---cCccEEEECCch
Q 004942 310 ---MKADLVIAGSAV 321 (722)
Q Consensus 310 ---~k~DlVia~Sav 321 (722)
-++|+||.+..+
T Consensus 78 ~~~g~id~li~~Ag~ 92 (276)
T 1wma_A 78 KEYGGLDVLVNNAGI 92 (276)
T ss_dssp HHHSSEEEEEECCCC
T ss_pred HhcCCCCEEEECCcc
Confidence 278999877654
No 233
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=21.48 E-value=3.5e+02 Score=22.37 Aligned_cols=85 Identities=11% Similarity=0.084 Sum_probs=54.2
Q ss_pred cEEeCCchhhHHHHHHH--cCEEEEcCCCCCCCccHHHHHHHHh-----CCCEEEcCCCC---hhhhhccCccEEEECCC
Q 004942 607 AMLWTPATTRVASLYSA--ADVYVINSQGLGETFGRVTIEAMAF-----GVPVLGTDAGG---TKEIVEHNVTGLLHPPG 676 (722)
Q Consensus 607 ~V~f~G~~~dv~~lysa--ADv~V~pS~~l~EgfglviLEAMA~-----GlPVVaTd~GG---~~EIVe~g~tGlLvp~~ 676 (722)
.|.......+....+.. .|++++-.. +.+.-|..+++.+.. ..|+|.+.... ..+.+..|..+++..|-
T Consensus 32 ~v~~~~~~~~a~~~l~~~~~dlii~d~~-l~~~~g~~~~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~g~~~~l~kP~ 110 (132)
T 3lte_A 32 QVEIAHNGFDAGIKLSTFEPAIMTLDLS-MPKLDGLDVIRSLRQNKVANQPKILVVSGLDKAKLQQAVTEGADDYLEKPF 110 (132)
T ss_dssp EEEEESSHHHHHHHHHHTCCSEEEEESC-BTTBCHHHHHHHHHTTTCSSCCEEEEECCSCSHHHHHHHHHTCCEEECSSC
T ss_pred EEEEeCCHHHHHHHHHhcCCCEEEEecC-CCCCCHHHHHHHHHhcCccCCCeEEEEeCCChHHHHHHHHhChHHHhhCCC
Confidence 34444444444444433 488888765 455667788888753 34555554332 23456678899999998
Q ss_pred CccHHHHHHHHHHhhcCH
Q 004942 677 HPGAQVLAQNLRYLLKNP 694 (722)
Q Consensus 677 d~~~e~LA~aI~~LL~np 694 (722)
+. +.|.+.|.......
T Consensus 111 ~~--~~l~~~i~~~~~~~ 126 (132)
T 3lte_A 111 DN--DALLDRIHDLVNEG 126 (132)
T ss_dssp CH--HHHHHHHHHHHC--
T ss_pred CH--HHHHHHHHHHcCCC
Confidence 88 99999999887643
No 234
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=21.36 E-value=3.5e+02 Score=22.31 Aligned_cols=83 Identities=11% Similarity=0.208 Sum_probs=53.0
Q ss_pred EEeCCchhhHHHHHHH--cCEEEEcCCCCCCCccHHHHHHHH---hCCCEEE-cCCCCh---hhhhccCccEEEECCCCc
Q 004942 608 MLWTPATTRVASLYSA--ADVYVINSQGLGETFGRVTIEAMA---FGVPVLG-TDAGGT---KEIVEHNVTGLLHPPGHP 678 (722)
Q Consensus 608 V~f~G~~~dv~~lysa--ADv~V~pS~~l~EgfglviLEAMA---~GlPVVa-Td~GG~---~EIVe~g~tGlLvp~~d~ 678 (722)
+.......+...++.. .|++++-.. +...-|.-+++.+. ..+|||. |..... .+.+..|..|++..|-+.
T Consensus 30 v~~~~~~~~~~~~~~~~~~dlvi~D~~-l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~ 108 (126)
T 1dbw_A 30 VKMHQSAEAFLAFAPDVRNGVLVTDLR-MPDMSGVELLRNLGDLKINIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFED 108 (126)
T ss_dssp EEEESCHHHHHHHGGGCCSEEEEEECC-STTSCHHHHHHHHHHTTCCCCEEEEECTTCHHHHHHHHHTTCSEEEESSCCH
T ss_pred EEEeCCHHHHHHHHhcCCCCEEEEECC-CCCCCHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHhCHHHheeCCCCH
Confidence 4433333344444443 478887654 34445666777664 3678876 444432 345567889999999888
Q ss_pred cHHHHHHHHHHhhcC
Q 004942 679 GAQVLAQNLRYLLKN 693 (722)
Q Consensus 679 ~~e~LA~aI~~LL~n 693 (722)
+.|.+.|..+++.
T Consensus 109 --~~l~~~i~~~~~~ 121 (126)
T 1dbw_A 109 --TVIIEAIERASEH 121 (126)
T ss_dssp --HHHHHHHHHHHTT
T ss_pred --HHHHHHHHHHHHh
Confidence 9999999888753
No 235
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=21.32 E-value=1.1e+02 Score=28.63 Aligned_cols=62 Identities=23% Similarity=0.166 Sum_probs=37.3
Q ss_pred CcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCcc--chhh-hcCccEEEECC
Q 004942 255 TGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP--SFKT-SMKADLVIAGS 319 (722)
Q Consensus 255 gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~--~~~~-~~k~DlVia~S 319 (722)
||+...=..+++.|.+.|++|.+++ +...-...+ ..++.++..+... .+.. -.++|+||...
T Consensus 11 GatG~iG~~l~~~L~~~g~~V~~~~--r~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a 75 (227)
T 3dhn_A 11 GASGFVGSALLNEALNRGFEVTAVV--RHPEKIKIE-NEHLKVKKADVSSLDEVCEVCKGADAVISAF 75 (227)
T ss_dssp TCCHHHHHHHHHHHHTTTCEEEEEC--SCGGGCCCC-CTTEEEECCCTTCHHHHHHHHTTCSEEEECC
T ss_pred cCCchHHHHHHHHHHHCCCEEEEEE--cCcccchhc-cCceEEEEecCCCHHHHHHHhcCCCEEEEeC
Confidence 4556666778999999999998887 322111111 1567776544432 2333 23689997654
No 236
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}
Probab=21.24 E-value=1.7e+02 Score=28.44 Aligned_cols=32 Identities=22% Similarity=0.156 Sum_probs=21.5
Q ss_pred cEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEE
Q 004942 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVV 279 (722)
Q Consensus 243 kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ 279 (722)
.|.++|+- |+.-.=..+|+.|.+.|++|.++.
T Consensus 7 ~k~vlVTG-----as~gIG~~ia~~l~~~G~~V~~~~ 38 (260)
T 2z1n_A 7 GKLAVVTA-----GSSGLGFASALELARNGARLLLFS 38 (260)
T ss_dssp TCEEEEET-----TTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEEC-----CCchHHHHHHHHHHHCCCEEEEEe
Confidence 35566653 222334567889999999988876
No 237
>3aek_A Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_A* 3aes_A* 3aer_A* 3aet_A 3aeu_A
Probab=21.22 E-value=1.3e+02 Score=32.76 Aligned_cols=76 Identities=16% Similarity=0.239 Sum_probs=48.3
Q ss_pred hhhccccEEEEEeCCCCCCcHHHHHHHHHHHH-HhCCCEEEEEEEcCCCC-C-hhHHHh--CCcEEEEcCCcc---chhh
Q 004942 237 ARFVWSRKFILIFHELSMTGAPLSMMELATEL-LSCGATVSAVVLSKRGG-L-MPELAR--RKIKVLEDRGEP---SFKT 308 (722)
Q Consensus 237 ~~~~~~kkillI~hels~gGaplsm~eLA~eL-~s~G~~VsvV~ls~~g~-l-~~el~~--~gI~Vl~~~~~~---~~~~ 308 (722)
..++..||++++.. +.....|++.| .++|.+|..+....... + .+++.. .++.|....... .+.+
T Consensus 302 ~~~l~Gkrv~i~g~-------~~~~~~l~~~L~~elG~~vv~~~~~~~~~~~~~~~l~~l~~~~~v~~~~d~~e~~~~i~ 374 (437)
T 3aek_A 302 LETLTGKSLFMFPD-------SQLEIPLARFLARECGMKTTEIATPFLHKAIMAPDLALLPSNTALTEGQDLEAQLDRHE 374 (437)
T ss_dssp HHHHTTCEEEECSS-------SSCHHHHHHHHHHTTCCEEEEEEESCCCHHHHHHHHTTSBTTCEEEEECCHHHHHHHHH
T ss_pred HHHhCCCEEEEEcC-------chHHHHHHHHHHHHcCCEEEEEEecCCCHHHHHHHHHhcCCCCEEEeCCCHHHHHHHHh
Confidence 34667788887632 34677789999 89999999987533221 1 122322 355666443322 4555
Q ss_pred hcCccEEEECC
Q 004942 309 SMKADLVIAGS 319 (722)
Q Consensus 309 ~~k~DlVia~S 319 (722)
+.+||+++.++
T Consensus 375 ~~~pDliig~~ 385 (437)
T 3aek_A 375 AINPDLTVCGL 385 (437)
T ss_dssp HHCCSEEEECH
T ss_pred ccCCCEEEeCC
Confidence 78999998874
No 238
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*
Probab=21.20 E-value=1.6e+02 Score=31.84 Aligned_cols=53 Identities=15% Similarity=0.166 Sum_probs=37.0
Q ss_pred cccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCC--C-C--------ChhHHHhCCcEEEEc
Q 004942 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKR--G-G--------LMPELARRKIKVLED 300 (722)
Q Consensus 241 ~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~--g-~--------l~~el~~~gI~Vl~~ 300 (722)
..+++++| |+....+|+|..|.+.|.+|+++..... . . +...+.+.||+++..
T Consensus 193 ~~~~vvVI-------GgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~ 256 (490)
T 2bc0_A 193 DIKRVAVV-------GAGYIGVELAEAFQRKGKEVVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLAFG 256 (490)
T ss_dssp TCCEEEEE-------CCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHTTTCEEEET
T ss_pred CCceEEEE-------CCCHHHHHHHHHHHHCCCeEEEEEcccchhhhHHHHHHHHHHHHHHHhCCeEEEeC
Confidence 46788877 4455778999999999999999983321 0 1 123356788888764
No 239
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Probab=21.14 E-value=1.5e+02 Score=30.38 Aligned_cols=90 Identities=14% Similarity=0.104 Sum_probs=50.7
Q ss_pred ceeEEEcCCchhHHHHHHhhhccCCCCCCc----hhHHHHHHHHHhcCCCCCcEEeCCchhhHHHHHH--HcCEEEEcCC
Q 004942 559 RRKVLSKSDGKQQQALKILIGSVGSKSNKV----PYVKEILEFLSQHSNLSKAMLWTPATTRVASLYS--AADVYVINSQ 632 (722)
Q Consensus 559 ~~~lli~G~G~~~~~Lk~lI~~~Gs~sn~~----~Y~~el~~~l~~~~~L~~~V~f~G~~~dv~~lys--aADv~V~pS~ 632 (722)
.+++-++|-|..-...-..+...+...-.. .-..+..+.+++.++.+. ..+++.+++. ..|++++++.
T Consensus 2 ~~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~~~~------~~~~~~~ll~~~~vD~V~i~tp 75 (334)
T 3ohs_X 2 ALRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIPK------AYGSYEELAKDPNVEVAYVGTQ 75 (334)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHTCSC------EESSHHHHHHCTTCCEEEECCC
T ss_pred ccEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcCCCc------ccCCHHHHhcCCCCCEEEECCC
Confidence 367889998865443322222221100000 001223333444445431 1257888888 5799888775
Q ss_pred CCCCCccHHHHHHHHhCCCEEEcC
Q 004942 633 GLGETFGRVTIEAMAFGVPVLGTD 656 (722)
Q Consensus 633 ~l~EgfglviLEAMA~GlPVVaTd 656 (722)
.....-.+.+|+..|++|++-.
T Consensus 76 --~~~H~~~~~~al~~GkhVl~EK 97 (334)
T 3ohs_X 76 --HPQHKAAVMLCLAAGKAVLCEK 97 (334)
T ss_dssp --GGGHHHHHHHHHHTTCEEEEES
T ss_pred --cHHHHHHHHHHHhcCCEEEEEC
Confidence 4444556889999999999864
No 240
>1l5x_A SurviVal protein E; structural genomics, putative acid phosphatase, mixed alpha/ protein, N-terminal rossmann-fold like; 2.00A {Pyrobaculum aerophilum} SCOP: c.106.1.1
Probab=20.95 E-value=1.1e+02 Score=31.97 Aligned_cols=35 Identities=26% Similarity=0.208 Sum_probs=25.0
Q ss_pred EEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCC
Q 004942 246 ILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKR 283 (722)
Q Consensus 246 llI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~ 283 (722)
+||++.-++.-..+ ..|+++|.+.| +|.||++...
T Consensus 3 ILlTNDDGi~ApGi--~aL~~aL~~~g-~V~VVAP~~~ 37 (280)
T 1l5x_A 3 ILVTNDDGVHSPGL--RLLYQFALSLG-DVDVVAPESP 37 (280)
T ss_dssp EEEECSSCTTCHHH--HHHHHHHGGGS-EEEEEEESSC
T ss_pred EEEEcCCCCCcHhH--HHHHHHHHhCC-CEEEEecCCC
Confidence 45666666654444 44888898888 9999998654
No 241
>2qjw_A Uncharacterized protein XCC1541; putative hydrolase of the alpha/beta superfamily, structural genomics; HET: MSE TLA P6G; 1.35A {Xanthomonas campestris PV}
Probab=20.92 E-value=79 Score=27.72 Aligned_cols=38 Identities=21% Similarity=0.120 Sum_probs=27.3
Q ss_pred ccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEE
Q 004942 242 SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVV 279 (722)
Q Consensus 242 ~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ 279 (722)
++..++++|.+..+.....+..++..|.+.|+.|.++-
T Consensus 3 ~~~~vv~~HG~~~~~~~~~~~~~~~~l~~~g~~v~~~d 40 (176)
T 2qjw_A 3 SRGHCILAHGFESGPDALKVTALAEVAERLGWTHERPD 40 (176)
T ss_dssp SSCEEEEECCTTCCTTSHHHHHHHHHHHHTTCEEECCC
T ss_pred CCcEEEEEeCCCCCccHHHHHHHHHHHHHCCCEEEEeC
Confidence 45677788977654443356689999999998886664
No 242
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=20.85 E-value=3.1e+02 Score=28.34 Aligned_cols=71 Identities=23% Similarity=0.198 Sum_probs=41.6
Q ss_pred ccEEEEEeCCCCCCcHHHHHHHHHHHHHh--CCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCcc-----------chhh
Q 004942 242 SRKFILIFHELSMTGAPLSMMELATELLS--CGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP-----------SFKT 308 (722)
Q Consensus 242 ~kkillI~hels~gGaplsm~eLA~eL~s--~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~-----------~~~~ 308 (722)
++||+++.. ..|.. +..|.....+ ..++|.+|...+ ........+.||+++..+... ....
T Consensus 90 ~~ri~vl~S---g~g~~--l~~ll~~~~~g~l~~~i~~Visn~-~~~~~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~ 163 (286)
T 3n0v_A 90 RPKVVIMVS---KADHC--LNDLLYRQRIGQLGMDVVAVVSNH-PDLEPLAHWHKIPYYHFALDPKDKPGQERKVLQVIE 163 (286)
T ss_dssp CCEEEEEES---SCCHH--HHHHHHHHHTTSSCCEEEEEEESS-STTHHHHHHTTCCEEECCCBTTBHHHHHHHHHHHHH
T ss_pred CcEEEEEEe---CCCCC--HHHHHHHHHCCCCCcEEEEEEeCc-HHHHHHHHHcCCCEEEeCCCcCCHHHHHHHHHHHHH
Confidence 345654432 23443 4445544433 357888888554 345555678999999865321 2334
Q ss_pred hcCccEEEEC
Q 004942 309 SMKADLVIAG 318 (722)
Q Consensus 309 ~~k~DlVia~ 318 (722)
+.+||+|++-
T Consensus 164 ~~~~Dlivla 173 (286)
T 3n0v_A 164 ETGAELVILA 173 (286)
T ss_dssp HHTCSEEEES
T ss_pred hcCCCEEEec
Confidence 7899999443
No 243
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=20.82 E-value=2.8e+02 Score=28.97 Aligned_cols=70 Identities=16% Similarity=0.239 Sum_probs=41.3
Q ss_pred cEEEEEeCCCCCCcHHHHHHHHHHHHHh--CCCEEEEEEEcCCCCChhHHHhCCcEEEEcCCcc-----------chhhh
Q 004942 243 RKFILIFHELSMTGAPLSMMELATELLS--CGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP-----------SFKTS 309 (722)
Q Consensus 243 kkillI~hels~gGaplsm~eLA~eL~s--~G~~VsvV~ls~~g~l~~el~~~gI~Vl~~~~~~-----------~~~~~ 309 (722)
+||+++. |..|.. +..|.....+ .+++|.+|...++ .......+.||+++..+... ....+
T Consensus 106 ~ri~vl~---Sg~g~n--l~~ll~~~~~g~l~~~I~~Visn~~-~~~~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~ 179 (302)
T 3o1l_A 106 KRVVLMA---SRESHC--LADLLHRWHSDELDCDIACVISNHQ-DLRSMVEWHDIPYYHVPVDPKDKEPAFAEVSRLVGH 179 (302)
T ss_dssp CEEEEEE---CSCCHH--HHHHHHHHHTTCSCSEEEEEEESSS-TTHHHHHTTTCCEEECCCCSSCCHHHHHHHHHHHHH
T ss_pred cEEEEEE---eCCchh--HHHHHHHHHCCCCCcEEEEEEECcH-HHHHHHHHcCCCEEEcCCCcCCHHHHHHHHHHHHHH
Confidence 4554443 223544 4445544433 3578988885543 45555678999999874321 23347
Q ss_pred cCccEEEEC
Q 004942 310 MKADLVIAG 318 (722)
Q Consensus 310 ~k~DlVia~ 318 (722)
.+||+|++-
T Consensus 180 ~~~DliVla 188 (302)
T 3o1l_A 180 HQADVVVLA 188 (302)
T ss_dssp TTCSEEEES
T ss_pred hCCCEEEHh
Confidence 899999443
No 244
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}
Probab=20.80 E-value=1.7e+02 Score=28.64 Aligned_cols=72 Identities=15% Similarity=0.132 Sum_probs=40.1
Q ss_pred cEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCC----ChhHHHhCCcEEEEcCCcc----c---hhh---
Q 004942 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG----LMPELARRKIKVLEDRGEP----S---FKT--- 308 (722)
Q Consensus 243 kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~----l~~el~~~gI~Vl~~~~~~----~---~~~--- 308 (722)
.+.++|+- |+.-.=..+|+.|.+.|++|.++. +... +..++...+.++.....+. . +..
T Consensus 29 ~k~vlITG-----as~gIG~~la~~l~~~G~~V~~~~--r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 101 (262)
T 3rkr_A 29 GQVAVVTG-----ASRGIGAAIARKLGSLGARVVLTA--RDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVL 101 (262)
T ss_dssp TCEEEESS-----TTSHHHHHHHHHHHHTTCEEEEEE--SCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCEEEEEC-----CCChHHHHHHHHHHHCCCEEEEEE--CCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHH
Confidence 35666643 333344567899999999988776 3222 2233444454444333332 1 111
Q ss_pred --hcCccEEEECCch
Q 004942 309 --SMKADLVIAGSAV 321 (722)
Q Consensus 309 --~~k~DlVia~Sav 321 (722)
.-++|++|.+..+
T Consensus 102 ~~~g~id~lv~~Ag~ 116 (262)
T 3rkr_A 102 AAHGRCDVLVNNAGV 116 (262)
T ss_dssp HHHSCCSEEEECCCC
T ss_pred HhcCCCCEEEECCCc
Confidence 2378999888654
No 245
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2
Probab=20.79 E-value=1.9e+02 Score=28.02 Aligned_cols=71 Identities=17% Similarity=-0.001 Sum_probs=39.7
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHH-HhCCcEEEEcCCcc--chhh--------hcCc
Q 004942 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPEL-ARRKIKVLEDRGEP--SFKT--------SMKA 312 (722)
Q Consensus 244 killI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el-~~~gI~Vl~~~~~~--~~~~--------~~k~ 312 (722)
|.++|+- |+.-.=..+|+.|.+.|++|.++. +...-..++ ...|+.++..+... .+.. .-++
T Consensus 6 k~vlVTG-----as~giG~~ia~~l~~~G~~V~~~~--r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 78 (245)
T 1uls_A 6 KAVLITG-----AAHGIGRATLELFAKEGARLVACD--IEEGPLREAAEAVGAHPVVMDVADPASVERGFAEALAHLGRL 78 (245)
T ss_dssp CEEEEES-----TTSHHHHHHHHHHHHTTCEEEEEE--SCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred CEEEEEC-----CCCHHHHHHHHHHHHCCCEEEEEe--CCHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 4556653 223334457889999999998876 322222222 23356666554332 1111 2368
Q ss_pred cEEEECCch
Q 004942 313 DLVIAGSAV 321 (722)
Q Consensus 313 DlVia~Sav 321 (722)
|++|.+..+
T Consensus 79 d~lvn~Ag~ 87 (245)
T 1uls_A 79 DGVVHYAGI 87 (245)
T ss_dssp CEEEECCCC
T ss_pred CEEEECCCC
Confidence 999887643
No 246
>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Probab=20.69 E-value=2.6e+02 Score=26.56 Aligned_cols=62 Identities=21% Similarity=0.106 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHH-h-CCcEEEEcCCcc--chhh---h-cCccEEEECCch
Q 004942 258 PLSMMELATELLSCGATVSAVVLSKRGGLMPELA-R-RKIKVLEDRGEP--SFKT---S-MKADLVIAGSAV 321 (722)
Q Consensus 258 plsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~-~-~gI~Vl~~~~~~--~~~~---~-~k~DlVia~Sav 321 (722)
.-.=..+|+.|.+.|++|.++. +...-.+++. . .++.++..+... .+.. . -++|+||.+..+
T Consensus 17 ggiG~~~a~~l~~~G~~V~~~~--r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~Ag~ 86 (244)
T 3d3w_A 17 KGIGRGTVQALHATGARVVAVS--RTQADLDSLVRECPGIEPVCVDLGDWEATERALGSVGPVDLLVNNAAV 86 (244)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEE--SCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCCEEEECCCC
T ss_pred cHHHHHHHHHHHHCCCEEEEEe--CCHHHHHHHHHHcCCCCEEEEeCCCHHHHHHHHHHcCCCCEEEECCcc
Confidence 3344567889999999988776 3222122222 1 366776544322 2222 2 268999887543
No 247
>2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=20.64 E-value=92 Score=33.82 Aligned_cols=76 Identities=20% Similarity=0.292 Sum_probs=45.9
Q ss_pred hhhhccccEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCC-CCh----hHHHh----C---CcEEEEcCCc
Q 004942 236 FARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRG-GLM----PELAR----R---KIKVLEDRGE 303 (722)
Q Consensus 236 f~~~~~~kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g-~l~----~el~~----~---gI~Vl~~~~~ 303 (722)
+...+..||+++... +.....|++.|..+|.+|..+...... .+. ..+.+ . +..++.....
T Consensus 311 ~~~~l~GKrv~i~g~-------~~~~~~la~~L~elGm~vv~~gt~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~d~ 383 (460)
T 2xdq_A 311 YLELVRGKSVFFMGD-------NLLEISLARFLIRCGMRVLEIGIPYMDKRYQAAELALLSQTCAEMGHPLPTIVEKPDN 383 (460)
T ss_dssp HHHHHTTCEEEECCC-------SSCHHHHHHHHHHTTCEEEEEEESCCCHHHHHHHHHHHHHHHHHTTCCCCEEEESCCH
T ss_pred HHHHhcCCEEEEECC-------chHHHHHHHHHHHCCCEEEEeCCCCCChhHHHHHHHHHHHHHHhhCCCCcEEEECCCH
Confidence 455678889987632 345667888888999999987632111 111 12222 2 3455553332
Q ss_pred c---chhhhcCccEEEEC
Q 004942 304 P---SFKTSMKADLVIAG 318 (722)
Q Consensus 304 ~---~~~~~~k~DlVia~ 318 (722)
. .+.++.+||++|.+
T Consensus 384 ~el~~~i~~~~pDL~ig~ 401 (460)
T 2xdq_A 384 YNQLQRIKALQPDLVITG 401 (460)
T ss_dssp HHHHHHHHHHCCSEEEEC
T ss_pred HHHHHHHhccCCCEEEeC
Confidence 2 45557899999877
No 248
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*
Probab=20.51 E-value=1.6e+02 Score=28.51 Aligned_cols=60 Identities=13% Similarity=0.058 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhCCCEEEEEEEcCCCCChhHHH----h-CCcEEEEcCCcc--chhh--------hcCccEEEECCch
Q 004942 260 SMMELATELLSCGATVSAVVLSKRGGLMPELA----R-RKIKVLEDRGEP--SFKT--------SMKADLVIAGSAV 321 (722)
Q Consensus 260 sm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~----~-~gI~Vl~~~~~~--~~~~--------~~k~DlVia~Sav 321 (722)
.=..+|+.|.+.|++|.++. +......++. . .++.++..+... .+.. .-++|+||.+..+
T Consensus 28 iG~~~a~~l~~~G~~V~~~~--r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~~Ag~ 102 (278)
T 2bgk_A 28 IGETTAKLFVRYGAKVVIAD--IADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGKLDIMFGNVGV 102 (278)
T ss_dssp HHHHHHHHHHHTTCEEEEEE--SCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHCCCEEEEEc--CChhHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCcc
Confidence 34567889999999988875 2221112221 1 146666544432 2221 1278999887654
No 249
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Probab=20.45 E-value=77 Score=31.63 Aligned_cols=72 Identities=14% Similarity=0.114 Sum_probs=40.2
Q ss_pred cEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHH-Hh--CCcEEEEcCCcc-----chhh-----h
Q 004942 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPEL-AR--RKIKVLEDRGEP-----SFKT-----S 309 (722)
Q Consensus 243 kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el-~~--~gI~Vl~~~~~~-----~~~~-----~ 309 (722)
.|+++|+- |+.-.=..+|+.|.+.|++|.++. +...-..++ .. ..+.++..+... .+.. .
T Consensus 28 ~k~~lVTG-----as~GIG~aia~~la~~G~~V~~~~--r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 100 (272)
T 4dyv_A 28 KKIAIVTG-----AGSGVGRAVAVALAGAGYGVALAG--RRLDALQETAAEIGDDALCVPTDVTDPDSVRALFTATVEKF 100 (272)
T ss_dssp CCEEEETT-----TTSHHHHHHHHHHHHTTCEEEEEE--SCHHHHHHHHHHHTSCCEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeC-----CCcHHHHHHHHHHHHCCCEEEEEE--CCHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHHHHc
Confidence 46666643 333334568899999999988776 322211222 22 345555544332 1111 2
Q ss_pred cCccEEEECCch
Q 004942 310 MKADLVIAGSAV 321 (722)
Q Consensus 310 ~k~DlVia~Sav 321 (722)
-++|+++.+..+
T Consensus 101 g~iD~lVnnAg~ 112 (272)
T 4dyv_A 101 GRVDVLFNNAGT 112 (272)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 289999888654
No 250
>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*
Probab=20.28 E-value=1.6e+02 Score=30.11 Aligned_cols=78 Identities=10% Similarity=0.115 Sum_probs=44.0
Q ss_pred hhhhccccEEEEEeCCCCCCcHHHHHHHHHHHHHhC-CC-EEEEEEEcCCCCChh----HHHhCCcEEEEcCCcc--chh
Q 004942 236 FARFVWSRKFILIFHELSMTGAPLSMMELATELLSC-GA-TVSAVVLSKRGGLMP----ELARRKIKVLEDRGEP--SFK 307 (722)
Q Consensus 236 f~~~~~~kkillI~hels~gGaplsm~eLA~eL~s~-G~-~VsvV~ls~~g~l~~----el~~~gI~Vl~~~~~~--~~~ 307 (722)
....+..++|+ |+ ||+...=..|++.|++. |+ +|.+++ +...-.. ++...++.++..+... .+.
T Consensus 15 ~~~~~~~k~vl-VT-----GatG~iG~~l~~~L~~~~g~~~V~~~~--r~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~ 86 (344)
T 2gn4_A 15 HQNMLDNQTIL-IT-----GGTGSFGKCFVRKVLDTTNAKKIIVYS--RDELKQSEMAMEFNDPRMRFFIGDVRDLERLN 86 (344)
T ss_dssp -CCTTTTCEEE-EE-----TTTSHHHHHHHHHHHHHCCCSEEEEEE--SCHHHHHHHHHHHCCTTEEEEECCTTCHHHHH
T ss_pred HHHhhCCCEEE-EE-----CCCcHHHHHHHHHHHhhCCCCEEEEEE--CChhhHHHHHHHhcCCCEEEEECCCCCHHHHH
Confidence 34445555655 43 34444556678889998 97 888876 3221111 2223467777654432 333
Q ss_pred hh-cCccEEEECCch
Q 004942 308 TS-MKADLVIAGSAV 321 (722)
Q Consensus 308 ~~-~k~DlVia~Sav 321 (722)
.. .++|+||...+.
T Consensus 87 ~~~~~~D~Vih~Aa~ 101 (344)
T 2gn4_A 87 YALEGVDICIHAAAL 101 (344)
T ss_dssp HHTTTCSEEEECCCC
T ss_pred HHHhcCCEEEECCCC
Confidence 32 378999887654
No 251
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0
Probab=20.24 E-value=1e+02 Score=29.92 Aligned_cols=72 Identities=13% Similarity=0.038 Sum_probs=38.6
Q ss_pred cEEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCChhHHH---hCCcEEEEcCCcc--ch---hh-----h
Q 004942 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELA---RRKIKVLEDRGEP--SF---KT-----S 309 (722)
Q Consensus 243 kkillI~hels~gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l~~el~---~~gI~Vl~~~~~~--~~---~~-----~ 309 (722)
.|.++|+- |+.-.=..+|+.|.+.|++|.++. +...-..++. ..++.++..+... .+ .. .
T Consensus 3 ~k~vlVTG-----as~GIG~a~a~~l~~~G~~V~~~~--r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 75 (235)
T 3l6e_A 3 LGHIIVTG-----AGSGLGRALTIGLVERGHQVSMMG--RRYQRLQQQELLLGNAVIGIVADLAHHEDVDVAFAAAVEWG 75 (235)
T ss_dssp CCEEEEES-----TTSHHHHHHHHHHHHTTCEEEEEE--SCHHHHHHHHHHHGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEEC-----CCCHHHHHHHHHHHHCCCEEEEEE--CCHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhc
Confidence 34556653 233334568899999999988876 3222111211 1245555544332 11 11 2
Q ss_pred cCccEEEECCch
Q 004942 310 MKADLVIAGSAV 321 (722)
Q Consensus 310 ~k~DlVia~Sav 321 (722)
-++|+++.+..+
T Consensus 76 g~id~lvnnAg~ 87 (235)
T 3l6e_A 76 GLPELVLHCAGT 87 (235)
T ss_dssp CSCSEEEEECCC
T ss_pred CCCcEEEECCCC
Confidence 378999877543
No 252
>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2
Probab=20.06 E-value=2.5e+02 Score=31.73 Aligned_cols=67 Identities=18% Similarity=0.117 Sum_probs=39.2
Q ss_pred CcHHHHHHHHHHHHHhCCCEEEEEEEcCCCCC--hhH---HHhCCcEEEEcCCcc--chhh---hcCccEEEECCch
Q 004942 255 TGAPLSMMELATELLSCGATVSAVVLSKRGGL--MPE---LARRKIKVLEDRGEP--SFKT---SMKADLVIAGSAV 321 (722)
Q Consensus 255 gGaplsm~eLA~eL~s~G~~VsvV~ls~~g~l--~~e---l~~~gI~Vl~~~~~~--~~~~---~~k~DlVia~Sav 321 (722)
||+...-..|++.|++.|++|.++.-...... ... +...++.++..+... .+.. ..++|+||...+.
T Consensus 18 GatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~D~Vih~A~~ 94 (699)
T 1z45_A 18 GGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDSVIHFAGL 94 (699)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHSCCCEEEECCSC
T ss_pred CCCCHHHHHHHHHHHHCcCEEEEEECCCcchHHHHHHHhhccCCceEEEEcCCCCHHHHHHHHHhCCCCEEEECCcc
Confidence 34445556688899999999998873322211 111 224567777654432 2322 3379999877654
Done!