Query 004943
Match_columns 722
No_of_seqs 165 out of 180
Neff 6.7
Searched_HMMs 46136
Date Thu Mar 28 15:28:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004943.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004943hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2300 Uncharacterized conser 100.0 5E-115 1E-119 926.0 57.9 617 2-720 4-629 (629)
2 PF10345 Cohesin_load: Cohesin 100.0 2.8E-64 6.1E-69 586.5 58.2 562 4-640 2-606 (608)
3 KOG1130 Predicted G-alpha GTPa 99.7 3.2E-16 6.9E-21 166.7 17.9 264 351-648 62-352 (639)
4 KOG1840 Kinesin light chain [C 99.7 9.7E-15 2.1E-19 164.9 30.4 272 342-643 199-482 (508)
5 KOG4626 O-linked N-acetylgluco 99.7 1.4E-14 3.1E-19 160.3 23.8 234 345-641 253-486 (966)
6 TIGR00990 3a0801s09 mitochondr 99.6 1.4E-11 3E-16 144.8 43.6 246 343-645 330-576 (615)
7 KOG1130 Predicted G-alpha GTPa 99.6 1.8E-14 4E-19 153.5 17.1 240 410-652 57-316 (639)
8 PRK11447 cellulose synthase su 99.6 2.2E-11 4.8E-16 152.7 45.9 419 53-639 277-739 (1157)
9 KOG1840 Kinesin light chain [C 99.6 1.1E-12 2.5E-17 148.3 29.1 238 408-648 199-446 (508)
10 TIGR02917 PEP_TPR_lipo putativ 99.6 5.8E-11 1.3E-15 141.7 44.8 494 5-639 22-527 (899)
11 TIGR02917 PEP_TPR_lipo putativ 99.5 1.6E-10 3.5E-15 137.8 46.2 129 489-639 467-595 (899)
12 PRK11447 cellulose synthase su 99.5 2.1E-10 4.5E-15 144.1 46.8 203 408-640 461-700 (1157)
13 TIGR00990 3a0801s09 mitochondr 99.4 4.8E-10 1E-14 131.9 36.3 232 355-640 305-537 (615)
14 PRK04841 transcriptional regul 99.4 6.8E-11 1.5E-15 144.5 29.5 271 347-646 494-766 (903)
15 PRK11788 tetratricopeptide rep 99.4 1.7E-10 3.7E-15 126.8 28.1 239 348-639 39-277 (389)
16 KOG4626 O-linked N-acetylgluco 99.4 3.9E-12 8.6E-17 141.3 13.4 227 351-640 191-451 (966)
17 PRK04841 transcriptional regul 99.3 2.8E-09 6.1E-14 130.4 32.6 268 351-645 416-725 (903)
18 PRK09782 bacteriophage N4 rece 99.2 8.8E-08 1.9E-12 117.5 43.1 28 131-158 183-210 (987)
19 PRK11788 tetratricopeptide rep 99.2 3E-09 6.4E-14 117.0 27.2 239 346-640 71-311 (389)
20 TIGR02521 type_IV_pilW type IV 99.2 2.1E-09 4.5E-14 107.0 22.7 201 407-638 30-230 (234)
21 KOG1941 Acetylcholine receptor 99.2 2.1E-09 4.6E-14 113.9 22.9 284 350-646 12-326 (518)
22 PRK15174 Vi polysaccharide exp 99.1 1.4E-08 3.1E-13 120.4 26.6 257 347-640 113-381 (656)
23 TIGR02521 type_IV_pilW type IV 99.1 1.5E-08 3.3E-13 100.8 21.9 200 344-598 31-230 (234)
24 PRK15174 Vi polysaccharide exp 99.1 1.2E-08 2.5E-13 121.1 24.2 228 352-640 84-347 (656)
25 KOG1941 Acetylcholine receptor 99.1 1.9E-08 4.2E-13 106.8 21.7 221 414-644 128-364 (518)
26 PRK10049 pgaA outer membrane p 99.0 1.1E-06 2.4E-11 106.3 38.5 394 5-559 49-456 (765)
27 KOG2002 TPR-containing nuclear 99.0 4E-06 8.7E-11 98.7 38.6 248 357-642 426-711 (1018)
28 PRK09782 bacteriophage N4 rece 99.0 3E-08 6.5E-13 121.5 21.3 194 412-639 546-739 (987)
29 PRK12370 invasion protein regu 98.9 1.6E-07 3.4E-12 109.4 24.8 175 420-626 316-490 (553)
30 cd05804 StaR_like StaR_like; a 98.9 7.3E-07 1.6E-11 97.0 27.0 286 349-650 48-346 (355)
31 PRK10049 pgaA outer membrane p 98.9 1.4E-05 3E-10 96.8 40.2 204 414-639 244-455 (765)
32 PF14938 SNAP: Soluble NSF att 98.9 1.3E-07 2.9E-12 100.7 20.4 247 336-620 27-277 (282)
33 KOG2002 TPR-containing nuclear 98.8 3.1E-05 6.8E-10 91.4 38.4 475 4-639 232-744 (1018)
34 PRK12370 invasion protein regu 98.8 3.4E-07 7.3E-12 106.7 22.7 214 356-633 316-529 (553)
35 COG2956 Predicted N-acetylgluc 98.8 2.1E-06 4.5E-11 90.7 25.1 241 349-643 40-281 (389)
36 PRK11189 lipoprotein NlpI; Pro 98.8 3.4E-07 7.4E-12 98.3 19.5 200 407-639 63-264 (296)
37 PRK11189 lipoprotein NlpI; Pro 98.8 6.9E-07 1.5E-11 95.9 21.0 221 343-622 63-285 (296)
38 cd05804 StaR_like StaR_like; a 98.7 3.3E-06 7.1E-11 91.9 26.0 229 343-613 113-349 (355)
39 TIGR03302 OM_YfiO outer membra 98.7 7.2E-07 1.6E-11 91.7 19.3 176 408-596 33-228 (235)
40 TIGR00540 hemY_coli hemY prote 98.7 5.8E-06 1.3E-10 92.8 26.5 243 343-639 117-398 (409)
41 COG3063 PilF Tfp pilus assembl 98.7 1.2E-06 2.5E-11 89.0 18.3 191 413-636 40-232 (250)
42 KOG1126 DNA-binding cell divis 98.7 5E-07 1.1E-11 102.7 17.5 193 414-639 427-619 (638)
43 PRK14574 hmsH outer membrane p 98.7 0.00022 4.9E-09 86.4 41.0 233 362-632 262-505 (822)
44 PF13424 TPR_12: Tetratricopep 98.6 4.6E-07 1E-11 76.9 11.0 74 529-603 4-78 (78)
45 PF13429 TPR_15: Tetratricopep 98.6 3.6E-07 7.8E-12 96.7 12.5 228 351-639 15-242 (280)
46 PRK10747 putative protoheme IX 98.6 8.4E-06 1.8E-10 91.2 23.8 233 344-639 118-389 (398)
47 TIGR03302 OM_YfiO outer membra 98.6 7.2E-06 1.6E-10 84.2 20.8 181 447-638 30-230 (235)
48 PF14938 SNAP: Soluble NSF att 98.6 6E-06 1.3E-10 88.1 20.5 205 410-621 37-245 (282)
49 KOG1173 Anaphase-promoting com 98.5 2.5E-06 5.4E-11 95.5 16.9 197 414-641 318-519 (611)
50 COG3063 PilF Tfp pilus assembl 98.5 6.6E-06 1.4E-10 83.6 18.2 187 350-591 41-227 (250)
51 KOG1126 DNA-binding cell divis 98.5 9.9E-06 2.1E-10 92.4 21.0 167 343-559 454-620 (638)
52 PF13429 TPR_15: Tetratricopep 98.4 2.4E-06 5.2E-11 90.5 13.4 192 355-602 88-279 (280)
53 PF13424 TPR_12: Tetratricopep 98.4 3.3E-06 7.1E-11 71.7 10.6 76 567-642 1-77 (78)
54 TIGR00540 hemY_coli hemY prote 98.4 3.1E-05 6.8E-10 86.9 21.2 213 351-608 160-407 (409)
55 PF10345 Cohesin_load: Cohesin 98.4 0.015 3.3E-07 68.8 45.2 460 39-599 93-605 (608)
56 KOG0547 Translocase of outer m 98.3 0.00044 9.5E-09 76.9 28.5 240 344-643 326-569 (606)
57 KOG4162 Predicted calmodulin-b 98.3 0.001 2.2E-08 77.5 31.4 376 47-559 396-783 (799)
58 PRK15179 Vi polysaccharide bio 98.3 2.7E-05 5.9E-10 92.6 19.2 162 416-601 57-218 (694)
59 KOG2300 Uncharacterized conser 98.3 0.014 3E-07 65.3 40.7 486 86-653 7-527 (629)
60 PF09976 TPR_21: Tetratricopep 98.3 6.7E-05 1.5E-09 71.8 17.7 125 418-557 21-145 (145)
61 PRK10747 putative protoheme IX 98.2 0.00017 3.6E-09 80.8 22.6 200 349-602 158-392 (398)
62 PLN03081 pentatricopeptide (PP 98.2 0.0082 1.8E-07 72.1 38.1 144 10-181 92-237 (697)
63 CHL00033 ycf3 photosystem I as 98.2 2.5E-05 5.3E-10 76.5 13.6 117 448-566 33-149 (168)
64 KOG1155 Anaphase-promoting com 98.2 0.00011 2.3E-09 81.1 19.0 203 414-641 268-496 (559)
65 KOG1155 Anaphase-promoting com 98.2 0.00014 3.1E-09 80.2 19.7 198 351-599 337-535 (559)
66 KOG1129 TPR repeat-containing 98.2 5.2E-06 1.1E-10 87.7 8.4 130 413-559 329-458 (478)
67 PLN03218 maturation of RBCL 1; 98.2 0.00058 1.3E-08 85.0 27.7 205 411-637 510-745 (1060)
68 KOG2003 TPR repeat-containing 98.2 0.00011 2.4E-09 80.3 18.6 202 407-641 489-690 (840)
69 KOG4162 Predicted calmodulin-b 98.1 0.0087 1.9E-07 70.0 34.4 206 415-642 554-785 (799)
70 KOG2076 RNA polymerase III tra 98.1 0.016 3.4E-07 68.9 36.6 196 415-629 323-544 (895)
71 KOG0548 Molecular co-chaperone 98.1 0.015 3.2E-07 65.7 34.9 213 411-670 260-472 (539)
72 PLN03218 maturation of RBCL 1; 98.1 0.0083 1.8E-07 75.0 36.4 241 343-640 543-783 (1060)
73 PRK10370 formate-dependent nit 98.1 0.00013 2.8E-09 73.9 16.0 121 421-561 52-175 (198)
74 PRK10866 outer membrane biogen 98.0 0.0008 1.7E-08 70.4 21.1 173 413-594 37-235 (243)
75 KOG1129 TPR repeat-containing 98.0 7.4E-05 1.6E-09 79.2 12.9 229 351-640 230-458 (478)
76 CHL00033 ycf3 photosystem I as 98.0 0.00018 3.8E-09 70.5 14.6 115 483-604 31-146 (168)
77 PRK10370 formate-dependent nit 97.9 0.00093 2E-08 67.7 19.7 160 414-611 22-184 (198)
78 PLN03077 Protein ECB2; Provisi 97.9 0.02 4.3E-07 70.5 34.9 190 414-636 461-650 (857)
79 PF09976 TPR_21: Tetratricopep 97.9 0.00075 1.6E-08 64.5 17.6 121 500-637 24-144 (145)
80 KOG1173 Anaphase-promoting com 97.9 0.00016 3.5E-09 81.5 13.8 193 426-643 293-487 (611)
81 PRK15179 Vi polysaccharide bio 97.8 0.0005 1.1E-08 82.0 18.1 140 478-639 77-216 (694)
82 PRK14574 hmsH outer membrane p 97.8 0.15 3.3E-06 62.3 38.9 181 343-561 328-515 (822)
83 PLN03081 pentatricopeptide (PP 97.8 0.0018 3.9E-08 77.7 22.6 41 138-181 95-136 (697)
84 PRK02603 photosystem I assembl 97.8 0.00072 1.6E-08 66.5 15.5 101 528-638 33-133 (172)
85 PF13525 YfiO: Outer membrane 97.8 0.0029 6.3E-08 64.2 20.1 174 409-591 6-198 (203)
86 COG2909 MalT ATP-dependent tra 97.7 0.0067 1.5E-07 72.1 24.8 258 349-635 420-683 (894)
87 PRK15359 type III secretion sy 97.7 0.00038 8.2E-09 66.8 12.3 95 351-483 31-125 (144)
88 PRK02603 photosystem I assembl 97.7 0.00083 1.8E-08 66.1 14.9 106 447-561 32-144 (172)
89 PRK15363 pathogenicity island 97.7 0.00047 1E-08 67.0 11.7 115 409-534 36-150 (157)
90 PRK15359 type III secretion sy 97.6 0.00061 1.3E-08 65.4 12.1 95 453-559 27-121 (144)
91 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.00064 1.4E-08 61.2 11.3 103 531-640 3-105 (119)
92 COG2956 Predicted N-acetylgluc 97.6 0.0071 1.5E-07 64.6 19.9 229 415-669 42-277 (389)
93 PF12862 Apc5: Anaphase-promot 97.6 0.001 2.2E-08 59.1 11.8 82 540-622 8-92 (94)
94 COG3071 HemY Uncharacterized e 97.6 0.011 2.4E-07 64.6 21.7 241 343-638 117-388 (400)
95 COG2909 MalT ATP-dependent tra 97.5 0.035 7.7E-07 66.2 26.7 163 419-590 371-556 (894)
96 PLN03077 Protein ECB2; Provisi 97.5 0.013 2.8E-07 72.0 24.1 124 411-557 326-482 (857)
97 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.0018 3.8E-08 58.3 12.2 104 451-560 3-106 (119)
98 KOG2003 TPR repeat-containing 97.5 0.0088 1.9E-07 66.0 19.2 234 359-633 375-614 (840)
99 KOG1125 TPR repeat-containing 97.5 0.006 1.3E-07 69.3 18.5 225 350-631 291-562 (579)
100 PRK15363 pathogenicity island 97.4 0.0021 4.5E-08 62.6 12.5 101 340-483 36-136 (157)
101 PF12688 TPR_5: Tetratrico pep 97.4 0.002 4.3E-08 60.2 11.6 99 531-636 2-100 (120)
102 PF12569 NARP1: NMDA receptor- 97.4 0.036 7.8E-07 64.2 24.4 110 532-652 230-346 (517)
103 cd00189 TPR Tetratricopeptide 97.4 0.0012 2.5E-08 54.6 9.2 93 411-514 3-95 (100)
104 KOG1585 Protein required for f 97.4 0.031 6.7E-07 57.8 20.7 229 336-598 23-254 (308)
105 cd00189 TPR Tetratricopeptide 97.4 0.0006 1.3E-08 56.3 7.2 94 532-638 2-95 (100)
106 PF13414 TPR_11: TPR repeat; P 97.3 0.0011 2.3E-08 54.7 7.9 65 529-600 2-67 (69)
107 PRK10866 outer membrane biogen 97.3 0.042 9.1E-07 57.5 21.6 174 449-635 31-236 (243)
108 PF13414 TPR_11: TPR repeat; P 97.3 0.00059 1.3E-08 56.2 6.1 63 409-479 4-67 (69)
109 COG3071 HemY Uncharacterized e 97.3 0.043 9.3E-07 60.2 21.6 209 343-605 152-395 (400)
110 KOG0550 Molecular chaperone (D 97.2 0.0052 1.1E-07 67.4 13.8 62 414-483 175-236 (486)
111 PF13525 YfiO: Outer membrane 97.2 0.044 9.4E-07 55.6 19.8 173 450-631 5-198 (203)
112 KOG0548 Molecular co-chaperone 97.2 0.071 1.5E-06 60.5 22.8 248 351-643 9-330 (539)
113 TIGR02552 LcrH_SycD type III s 97.2 0.0056 1.2E-07 56.9 12.2 97 349-483 22-118 (135)
114 PF12688 TPR_5: Tetratrico pep 97.1 0.0072 1.6E-07 56.5 12.2 103 451-559 2-104 (120)
115 PRK10153 DNA-binding transcrip 97.1 0.0078 1.7E-07 69.7 15.2 150 448-615 337-494 (517)
116 TIGR02552 LcrH_SycD type III s 97.1 0.0028 6E-08 59.0 9.2 99 530-641 17-115 (135)
117 COG5010 TadD Flp pilus assembl 97.1 0.0054 1.2E-07 63.8 12.0 123 414-556 106-228 (257)
118 KOG2376 Signal recognition par 97.1 0.025 5.4E-07 64.6 18.1 179 412-618 83-269 (652)
119 KOG1174 Anaphase-promoting com 97.1 0.0083 1.8E-07 65.8 13.6 191 415-639 307-499 (564)
120 KOG0547 Translocase of outer m 97.1 0.018 3.8E-07 64.5 16.3 133 413-562 433-569 (606)
121 COG4700 Uncharacterized protei 97.0 0.022 4.8E-07 56.7 15.1 155 429-606 74-228 (251)
122 KOG2076 RNA polymerase III tra 97.0 0.073 1.6E-06 63.5 21.9 235 351-636 214-508 (895)
123 KOG3060 Uncharacterized conser 97.0 0.24 5.1E-06 51.8 23.0 166 410-602 54-222 (289)
124 COG5010 TadD Flp pilus assembl 97.0 0.028 6.1E-07 58.6 16.4 153 454-632 70-223 (257)
125 PLN03088 SGT1, suppressor of 96.9 0.0039 8.4E-08 68.9 10.0 94 351-482 9-102 (356)
126 KOG1125 TPR repeat-containing 96.9 0.022 4.9E-07 64.8 15.9 200 414-641 291-528 (579)
127 PLN03088 SGT1, suppressor of 96.9 0.0083 1.8E-07 66.3 12.3 95 453-559 5-99 (356)
128 PRK14720 transcript cleavage f 96.9 0.048 1E-06 66.5 19.4 219 408-655 31-300 (906)
129 KOG0495 HAT repeat protein [RN 96.9 0.11 2.4E-06 60.1 20.8 182 415-625 658-865 (913)
130 PF12895 Apc3: Anaphase-promot 96.8 0.0079 1.7E-07 51.8 9.1 83 463-556 2-84 (84)
131 PRK10803 tol-pal system protei 96.8 0.35 7.5E-06 51.4 22.6 68 412-484 184-251 (263)
132 KOG4555 TPR repeat-containing 96.8 0.027 6E-07 53.1 12.4 109 439-559 32-144 (175)
133 KOG1174 Anaphase-promoting com 96.7 0.077 1.7E-06 58.5 17.3 188 413-634 339-528 (564)
134 KOG1586 Protein required for f 96.7 0.057 1.2E-06 55.6 15.3 163 462-663 26-192 (288)
135 KOG1128 Uncharacterized conser 96.7 0.025 5.4E-07 66.0 14.2 192 410-641 426-617 (777)
136 KOG1127 TPR repeat-containing 96.7 0.061 1.3E-06 64.7 17.4 173 414-604 532-704 (1238)
137 PF12862 Apc5: Anaphase-promot 96.7 0.019 4E-07 51.1 10.4 83 498-581 9-91 (94)
138 PF13432 TPR_16: Tetratricopep 96.7 0.0022 4.7E-08 52.3 4.1 61 413-481 2-62 (65)
139 PRK10803 tol-pal system protei 96.6 0.022 4.7E-07 60.4 12.5 93 419-516 154-246 (263)
140 KOG1585 Protein required for f 96.6 0.7 1.5E-05 48.2 22.2 180 412-635 35-214 (308)
141 PF13432 TPR_16: Tetratricopep 96.6 0.006 1.3E-07 49.7 6.1 59 535-600 2-60 (65)
142 KOG2376 Signal recognition par 96.6 0.93 2E-05 52.3 25.1 227 410-640 177-487 (652)
143 PF12895 Apc3: Anaphase-promot 96.5 0.018 4E-07 49.5 8.9 83 543-637 2-84 (84)
144 KOG1586 Protein required for f 96.5 1.1 2.3E-05 46.6 22.5 190 419-622 84-278 (288)
145 KOG0550 Molecular chaperone (D 96.4 0.041 8.9E-07 60.6 13.1 175 348-561 173-352 (486)
146 KOG0543 FKBP-type peptidyl-pro 96.4 0.086 1.9E-06 58.2 15.5 137 450-601 208-356 (397)
147 PF10300 DUF3808: Protein of u 96.4 2.7 5.9E-05 48.4 29.8 125 421-561 246-378 (468)
148 PRK10153 DNA-binding transcrip 96.4 0.078 1.7E-06 61.6 16.0 140 340-515 335-481 (517)
149 PF04733 Coatomer_E: Coatomer 96.4 0.024 5.2E-07 61.0 10.9 157 344-555 102-261 (290)
150 KOG0624 dsRNA-activated protei 96.3 0.21 4.6E-06 54.0 17.3 161 412-596 76-248 (504)
151 PLN02789 farnesyltranstransfer 96.3 1.1 2.3E-05 49.1 23.2 217 343-624 38-268 (320)
152 KOG1156 N-terminal acetyltrans 96.2 0.92 2E-05 52.8 22.6 219 359-632 10-240 (700)
153 KOG0495 HAT repeat protein [RN 96.1 1.6 3.4E-05 51.1 23.9 268 334-645 543-851 (913)
154 PF04733 Coatomer_E: Coatomer 96.1 0.024 5.2E-07 61.0 9.2 151 414-594 108-259 (290)
155 KOG4555 TPR repeat-containing 96.1 0.062 1.3E-06 50.7 10.5 100 409-516 44-144 (175)
156 COG4105 ComL DNA uptake lipopr 96.1 0.97 2.1E-05 47.4 20.4 177 408-593 34-226 (254)
157 PF12968 DUF3856: Domain of Un 96.0 0.35 7.6E-06 45.0 14.9 115 528-643 5-132 (144)
158 KOG4340 Uncharacterized conser 96.0 0.2 4.4E-06 53.3 15.0 157 412-599 48-206 (459)
159 PLN03098 LPA1 LOW PSII ACCUMUL 96.0 0.031 6.7E-07 62.8 9.6 67 529-600 74-141 (453)
160 COG4783 Putative Zn-dependent 95.9 0.51 1.1E-05 53.3 18.7 148 410-601 308-455 (484)
161 PRK11906 transcriptional regul 95.8 0.12 2.7E-06 58.2 13.3 137 452-601 257-402 (458)
162 PF13371 TPR_9: Tetratricopept 95.8 0.051 1.1E-06 45.0 8.0 62 415-484 2-63 (73)
163 PF12569 NARP1: NMDA receptor- 95.7 0.96 2.1E-05 52.6 20.6 189 412-625 198-389 (517)
164 KOG0553 TPR repeat-containing 95.7 0.072 1.6E-06 56.7 10.4 99 449-559 80-178 (304)
165 PF08631 SPO22: Meiosis protei 95.7 3.7 8E-05 43.8 25.0 136 418-560 3-151 (278)
166 KOG3617 WD40 and TPR repeat-co 95.6 0.78 1.7E-05 54.6 18.9 197 417-640 835-1051(1416)
167 PF13176 TPR_7: Tetratricopept 95.5 0.033 7.2E-07 40.3 5.2 35 573-607 1-35 (36)
168 PLN03098 LPA1 LOW PSII ACCUMUL 95.4 0.065 1.4E-06 60.3 9.4 67 408-479 75-141 (453)
169 COG4783 Putative Zn-dependent 95.4 0.21 4.5E-06 56.3 13.2 146 490-657 309-454 (484)
170 KOG2471 TPR repeat-containing 95.4 0.79 1.7E-05 51.8 17.4 272 353-645 292-653 (696)
171 KOG1128 Uncharacterized conser 95.4 0.8 1.7E-05 54.0 18.2 141 401-561 478-618 (777)
172 PF13176 TPR_7: Tetratricopept 95.3 0.04 8.6E-07 39.9 4.9 34 532-566 1-34 (36)
173 KOG0543 FKBP-type peptidyl-pro 95.3 0.067 1.4E-06 59.0 8.8 126 335-483 196-324 (397)
174 COG2976 Uncharacterized protei 95.2 1.8 3.8E-05 43.8 17.6 116 451-577 90-205 (207)
175 COG2976 Uncharacterized protei 95.1 4.4 9.6E-05 41.0 20.2 180 423-640 3-188 (207)
176 KOG1464 COP9 signalosome, subu 94.9 1.8 3.9E-05 45.7 17.4 236 359-625 42-286 (440)
177 PF08631 SPO22: Meiosis protei 94.9 6.4 0.00014 41.9 25.3 228 344-598 35-273 (278)
178 PF13374 TPR_10: Tetratricopep 94.8 0.059 1.3E-06 39.3 4.8 37 530-566 2-38 (42)
179 PF13374 TPR_10: Tetratricopep 94.8 0.061 1.3E-06 39.2 4.9 35 570-604 1-35 (42)
180 PRK14720 transcript cleavage f 94.8 0.39 8.5E-06 58.8 14.2 148 451-612 32-192 (906)
181 COG0457 NrfG FOG: TPR repeat [ 94.8 3.6 7.8E-05 38.5 21.9 202 412-640 63-265 (291)
182 PRK15331 chaperone protein Sic 94.7 0.29 6.3E-06 48.1 10.6 114 529-669 36-149 (165)
183 KOG0553 TPR repeat-containing 94.7 0.21 4.5E-06 53.3 10.3 112 351-503 88-199 (304)
184 KOG0624 dsRNA-activated protei 94.6 3.2 6.8E-05 45.4 18.7 250 350-636 112-366 (504)
185 PRK15331 chaperone protein Sic 94.5 0.39 8.4E-06 47.2 11.0 102 340-484 38-139 (165)
186 COG0457 NrfG FOG: TPR repeat [ 94.5 4.1 9E-05 38.1 21.3 210 343-603 58-268 (291)
187 KOG3617 WD40 and TPR repeat-co 94.5 8.6 0.00019 46.3 23.2 230 413-644 863-1178(1416)
188 KOG2796 Uncharacterized conser 94.5 5.6 0.00012 42.1 19.7 192 331-559 121-315 (366)
189 KOG1156 N-terminal acetyltrans 94.4 1.6 3.4E-05 51.0 17.1 198 351-597 48-245 (700)
190 PF07719 TPR_2: Tetratricopept 94.3 0.094 2E-06 36.6 4.7 30 530-559 1-30 (34)
191 PF09986 DUF2225: Uncharacteri 94.3 0.37 7.9E-06 49.6 10.7 97 463-559 90-194 (214)
192 COG1729 Uncharacterized protei 94.2 0.42 9.1E-06 50.4 11.1 100 453-559 144-244 (262)
193 COG4235 Cytochrome c biogenesi 94.2 0.75 1.6E-05 49.1 13.0 114 431-561 142-258 (287)
194 PF12968 DUF3856: Domain of Un 94.1 2.2 4.7E-05 39.9 14.2 110 455-566 14-136 (144)
195 COG4785 NlpI Lipoprotein NlpI, 94.1 0.88 1.9E-05 46.7 12.7 199 407-639 64-265 (297)
196 PF00515 TPR_1: Tetratricopept 94.1 0.11 2.3E-06 36.6 4.7 30 530-559 1-30 (34)
197 COG3898 Uncharacterized membra 94.1 12 0.00026 41.7 24.6 210 350-614 90-301 (531)
198 KOG3081 Vesicle coat complex C 94.0 1.1 2.5E-05 47.1 13.7 160 346-560 110-271 (299)
199 COG1729 Uncharacterized protei 94.0 0.39 8.5E-06 50.6 10.4 102 411-517 144-245 (262)
200 PF14559 TPR_19: Tetratricopep 93.9 0.15 3.2E-06 41.5 5.7 56 419-482 2-57 (68)
201 PF13512 TPR_18: Tetratricopep 93.9 1 2.2E-05 43.4 12.1 91 449-545 9-99 (142)
202 PF10602 RPN7: 26S proteasome 93.7 2.5 5.4E-05 42.2 15.2 130 426-560 14-143 (177)
203 PF09986 DUF2225: Uncharacteri 93.5 0.93 2E-05 46.6 12.1 95 543-637 90-191 (214)
204 COG4700 Uncharacterized protei 93.5 0.31 6.8E-06 48.8 8.1 94 533-638 92-187 (251)
205 COG4235 Cytochrome c biogenesi 93.3 0.64 1.4E-05 49.7 10.7 97 531-640 157-256 (287)
206 PF13371 TPR_9: Tetratricopept 93.1 0.28 6.1E-06 40.5 6.3 59 537-602 2-60 (73)
207 PF09295 ChAPs: ChAPs (Chs5p-A 93.1 1.5 3.2E-05 49.3 13.8 88 414-512 206-293 (395)
208 PF00515 TPR_1: Tetratricopept 93.1 0.22 4.8E-06 35.0 4.8 32 450-481 1-32 (34)
209 KOG1839 Uncharacterized protei 93.0 1.5 3.3E-05 54.9 14.6 185 414-604 938-1132(1236)
210 KOG3081 Vesicle coat complex C 93.0 5.9 0.00013 42.0 16.8 148 415-594 115-264 (299)
211 KOG2471 TPR repeat-containing 92.9 0.26 5.6E-06 55.5 7.2 120 414-562 246-367 (696)
212 KOG1127 TPR repeat-containing 92.8 32 0.0007 42.6 33.7 192 423-637 798-993 (1238)
213 COG3898 Uncharacterized membra 92.5 21 0.00046 39.9 24.9 170 414-604 90-262 (531)
214 PF07719 TPR_2: Tetratricopept 92.3 0.33 7.1E-06 33.8 4.8 32 450-481 1-32 (34)
215 KOG1070 rRNA processing protei 92.2 3.6 7.7E-05 52.0 16.0 187 352-559 1466-1663(1710)
216 PF13181 TPR_8: Tetratricopept 92.1 0.32 7E-06 34.0 4.6 31 530-560 1-31 (34)
217 PLN02789 farnesyltranstransfer 92.0 7.4 0.00016 42.6 17.1 174 419-623 48-229 (320)
218 PF14559 TPR_19: Tetratricopep 91.9 0.23 5E-06 40.3 4.2 54 541-601 2-55 (68)
219 PF10602 RPN7: 26S proteasome 91.8 6.5 0.00014 39.2 15.2 110 485-601 34-143 (177)
220 KOG4340 Uncharacterized conser 91.5 1.2 2.7E-05 47.5 9.9 101 451-554 145-265 (459)
221 PF03704 BTAD: Bacterial trans 91.4 3.5 7.5E-05 39.0 12.3 105 537-647 13-133 (146)
222 PF13181 TPR_8: Tetratricopept 91.1 0.53 1.2E-05 32.8 4.8 31 451-481 2-32 (34)
223 COG4785 NlpI Lipoprotein NlpI, 91.1 7.7 0.00017 40.1 14.6 184 412-625 103-289 (297)
224 KOG1463 26S proteasome regulat 90.9 3.9 8.5E-05 44.6 13.1 189 462-651 16-249 (411)
225 PRK11906 transcriptional regul 90.7 4.2 9E-05 46.2 13.7 152 423-593 273-429 (458)
226 KOG2047 mRNA splicing factor [ 90.5 24 0.00052 41.7 19.5 215 412-638 252-497 (835)
227 KOG3616 Selective LIM binding 90.4 32 0.0007 41.2 20.4 114 530-645 654-799 (1636)
228 PF09295 ChAPs: ChAPs (Chs5p-A 90.4 2.8 6.2E-05 47.1 12.2 87 533-632 203-289 (395)
229 COG4105 ComL DNA uptake lipopr 90.2 27 0.00059 36.8 20.1 175 448-632 32-225 (254)
230 PF13512 TPR_18: Tetratricopep 89.7 4 8.6E-05 39.3 10.8 103 412-519 14-128 (142)
231 PF10300 DUF3808: Protein of u 89.6 45 0.00098 38.5 29.6 279 343-642 33-378 (468)
232 PF03704 BTAD: Bacterial trans 89.4 6.3 0.00014 37.2 12.2 110 355-480 17-126 (146)
233 KOG1839 Uncharacterized protei 89.3 4.9 0.00011 50.5 13.9 204 449-655 931-1144(1236)
234 PF04184 ST7: ST7 protein; In 89.2 4.6 0.0001 46.2 12.5 109 357-483 213-324 (539)
235 KOG2581 26S proteasome regulat 88.8 46 0.00099 37.4 23.5 137 419-561 137-278 (493)
236 COG4649 Uncharacterized protei 86.7 10 0.00022 37.9 11.7 136 415-558 46-195 (221)
237 KOG3060 Uncharacterized conser 86.5 48 0.001 35.2 20.0 167 345-561 53-222 (289)
238 KOG1070 rRNA processing protei 85.3 33 0.00071 43.9 17.4 156 458-637 1466-1626(1710)
239 KOG3785 Uncharacterized conser 84.5 21 0.00046 39.3 13.7 83 419-511 33-115 (557)
240 PF13428 TPR_14: Tetratricopep 84.4 1.9 4.2E-05 32.3 4.4 28 532-559 3-30 (44)
241 PF11817 Foie-gras_1: Foie gra 84.0 12 0.00026 39.1 11.8 86 546-632 154-239 (247)
242 KOG3783 Uncharacterized conser 83.8 94 0.002 36.2 19.2 218 340-601 299-521 (546)
243 PF10579 Rapsyn_N: Rapsyn N-te 83.3 7.3 0.00016 33.7 7.9 72 532-607 8-79 (80)
244 KOG3616 Selective LIM binding 82.8 1.1E+02 0.0025 36.8 19.4 65 409-477 662-733 (1636)
245 KOG0545 Aryl-hydrocarbon recep 82.8 10 0.00022 39.8 10.2 98 453-559 181-293 (329)
246 PF07721 TPR_4: Tetratricopept 82.6 1.4 3E-05 29.5 2.7 25 531-555 2-26 (26)
247 PF13428 TPR_14: Tetratricopep 82.0 2.6 5.7E-05 31.6 4.4 29 573-601 3-31 (44)
248 PF11817 Foie-gras_1: Foie gra 81.9 71 0.0015 33.4 20.1 67 526-593 174-240 (247)
249 KOG3785 Uncharacterized conser 81.8 17 0.00036 40.1 11.7 54 414-475 63-116 (557)
250 smart00028 TPR Tetratricopepti 81.6 2.3 5.1E-05 27.3 3.6 30 451-480 2-31 (34)
251 COG5159 RPN6 26S proteasome re 81.2 85 0.0019 33.9 16.9 190 409-607 46-242 (421)
252 KOG4234 TPR repeat-containing 81.0 14 0.00031 37.7 10.2 94 453-559 98-197 (271)
253 KOG1463 26S proteasome regulat 80.9 76 0.0016 35.0 16.1 195 412-614 52-252 (411)
254 COG5159 RPN6 26S proteasome re 80.7 85 0.0018 33.9 16.1 226 418-653 13-248 (421)
255 KOG2796 Uncharacterized conser 80.4 7.9 0.00017 41.0 8.4 111 351-493 219-329 (366)
256 smart00028 TPR Tetratricopepti 80.4 2.4 5.1E-05 27.2 3.3 29 531-559 2-30 (34)
257 COG3118 Thioredoxin domain-con 79.7 31 0.00068 37.2 12.8 99 535-640 139-265 (304)
258 PF07721 TPR_4: Tetratricopept 79.3 2.2 4.7E-05 28.5 2.7 23 573-595 3-25 (26)
259 PF13174 TPR_6: Tetratricopept 79.1 3 6.5E-05 28.5 3.6 28 532-559 2-29 (33)
260 PF00244 14-3-3: 14-3-3 protei 78.9 74 0.0016 33.2 15.4 182 414-606 7-204 (236)
261 KOG2908 26S proteasome regulat 78.4 30 0.00065 38.0 12.3 114 335-473 67-180 (380)
262 KOG4648 Uncharacterized conser 77.3 6 0.00013 43.2 6.7 93 351-481 104-196 (536)
263 KOG4322 Anaphase-promoting com 77.2 1.4E+02 0.003 34.0 17.2 168 456-632 279-460 (482)
264 KOG3783 Uncharacterized conser 77.2 1.5E+02 0.0033 34.6 25.7 209 415-641 274-521 (546)
265 KOG4322 Anaphase-promoting com 76.0 1.5E+02 0.0032 33.8 18.8 88 526-614 309-396 (482)
266 KOG4234 TPR repeat-containing 74.1 55 0.0012 33.7 12.0 99 528-634 93-191 (271)
267 PF10516 SHNi-TPR: SHNi-TPR; 74.0 5.9 0.00013 29.4 4.0 31 531-561 2-32 (38)
268 PF13174 TPR_6: Tetratricopept 73.8 6.5 0.00014 26.7 4.1 29 452-480 2-30 (33)
269 PF10516 SHNi-TPR: SHNi-TPR; 73.6 6.3 0.00014 29.2 4.1 35 571-605 1-35 (38)
270 PRK10941 hypothetical protein; 73.5 22 0.00047 38.0 9.8 70 407-484 180-249 (269)
271 PF10952 DUF2753: Protein of u 72.9 30 0.00064 32.7 9.1 94 574-671 4-106 (140)
272 PF04190 DUF410: Protein of un 72.9 56 0.0012 34.6 12.8 94 548-643 68-173 (260)
273 KOG0545 Aryl-hydrocarbon recep 72.6 32 0.0007 36.3 10.3 106 354-479 188-293 (329)
274 PF10952 DUF2753: Protein of u 72.6 28 0.0006 32.9 8.8 53 453-505 4-68 (140)
275 PF04910 Tcf25: Transcriptiona 72.0 98 0.0021 34.5 14.9 145 407-560 39-223 (360)
276 KOG4648 Uncharacterized conser 72.0 17 0.00037 39.9 8.4 60 412-479 101-160 (536)
277 PF10579 Rapsyn_N: Rapsyn N-te 71.9 16 0.00035 31.7 6.7 61 583-646 18-78 (80)
278 PF04184 ST7: ST7 protein; In 71.9 22 0.00048 40.9 9.7 102 531-638 203-322 (539)
279 TIGR02561 HrpB1_HrpK type III 71.5 29 0.00063 33.8 9.1 89 412-511 14-105 (153)
280 PF13431 TPR_17: Tetratricopep 70.4 3.2 6.9E-05 29.7 1.9 32 553-591 2-33 (34)
281 PF09613 HrpB1_HrpK: Bacterial 69.8 34 0.00074 33.7 9.4 91 410-511 12-105 (160)
282 PF11207 DUF2989: Protein of u 67.8 15 0.00033 37.4 6.7 84 53-149 113-197 (203)
283 TIGR03504 FimV_Cterm FimV C-te 67.6 16 0.00036 27.9 5.3 41 575-619 3-43 (44)
284 KOG1915 Cell cycle control pro 67.2 1.6E+02 0.0034 34.1 14.8 67 530-601 471-537 (677)
285 PF08626 TRAPPC9-Trs120: Trans 66.6 37 0.0008 43.8 11.5 180 448-630 240-464 (1185)
286 PF04781 DUF627: Protein of un 64.4 76 0.0016 29.4 9.9 100 494-599 3-106 (111)
287 KOG4507 Uncharacterized conser 64.3 5.4 0.00012 46.3 3.0 96 451-561 608-707 (886)
288 KOG1915 Cell cycle control pro 64.2 2.8E+02 0.0061 32.2 19.6 218 358-625 380-610 (677)
289 PF06552 TOM20_plant: Plant sp 64.2 66 0.0014 32.4 10.2 113 568-688 22-146 (186)
290 PF13281 DUF4071: Domain of un 63.5 2.6E+02 0.0055 31.5 17.9 229 421-664 112-354 (374)
291 KOG2053 Mitochondrial inherita 61.6 4E+02 0.0087 33.1 19.5 162 414-598 49-217 (932)
292 KOG4507 Uncharacterized conser 60.8 41 0.00089 39.4 9.1 96 351-483 614-709 (886)
293 COG5187 RPN7 26S proteasome re 59.1 2.1E+02 0.0046 31.1 13.3 108 448-561 113-223 (412)
294 KOG0687 26S proteasome regulat 58.6 2.7E+02 0.006 30.7 14.3 69 414-484 147-215 (393)
295 KOG2047 mRNA splicing factor [ 58.5 4E+02 0.0087 32.1 20.4 211 414-638 353-577 (835)
296 KOG0687 26S proteasome regulat 58.3 2E+02 0.0044 31.7 13.2 132 449-587 103-239 (393)
297 COG2178 Predicted RNA-binding 56.9 41 0.00088 34.2 7.3 83 351-459 36-118 (204)
298 COG0790 FOG: TPR repeat, SEL1 56.4 2.6E+02 0.0057 29.3 19.5 134 421-585 90-236 (292)
299 PF14853 Fis1_TPR_C: Fis1 C-te 56.0 31 0.00067 27.5 5.2 35 532-569 3-37 (53)
300 PF04190 DUF410: Protein of un 55.3 1.7E+02 0.0038 30.9 12.4 47 426-474 68-114 (260)
301 PF15015 NYD-SP12_N: Spermatog 55.2 2E+02 0.0044 32.8 12.9 125 332-476 164-288 (569)
302 PF11207 DUF2989: Protein of u 55.1 37 0.00081 34.7 6.9 58 529-590 140-197 (203)
303 PF05843 Suf: Suppressor of fo 54.6 99 0.0021 33.0 10.6 92 415-515 42-135 (280)
304 KOG1464 COP9 signalosome, subu 54.6 2.1E+02 0.0045 30.8 12.4 209 419-643 38-264 (440)
305 PF05843 Suf: Suppressor of fo 54.3 1.9E+02 0.004 30.9 12.6 134 454-603 5-139 (280)
306 PF02259 FAT: FAT domain; Int 51.9 3.3E+02 0.0071 29.1 23.0 224 415-650 36-297 (352)
307 PF08626 TRAPPC9-Trs120: Trans 51.7 6.7E+02 0.015 32.6 23.9 206 413-621 247-553 (1185)
308 PF06552 TOM20_plant: Plant sp 50.0 1.7E+02 0.0038 29.5 10.5 61 412-477 29-100 (186)
309 KOG2041 WD40 repeat protein [G 49.7 5.6E+02 0.012 31.2 17.8 254 369-665 665-934 (1189)
310 PF04053 Coatomer_WDAD: Coatom 48.6 4.1E+02 0.0088 30.6 14.8 146 416-617 269-415 (443)
311 KOG4642 Chaperone-dependent E3 47.8 79 0.0017 33.4 7.9 63 412-482 48-110 (284)
312 PF13431 TPR_17: Tetratricopep 47.2 17 0.00036 25.9 2.2 21 530-550 13-33 (34)
313 PRK13184 pknD serine/threonine 46.0 1.1E+02 0.0023 38.5 10.2 97 362-483 486-585 (932)
314 PHA02537 M terminase endonucle 44.5 1.4E+02 0.0029 31.3 9.2 102 461-568 94-215 (230)
315 PF05053 Menin: Menin; InterP 42.7 2.6E+02 0.0056 33.0 11.8 93 543-657 292-384 (618)
316 TIGR03504 FimV_Cterm FimV C-te 41.4 78 0.0017 24.2 5.2 25 534-558 3-27 (44)
317 KOG0551 Hsp90 co-chaperone CNS 38.6 1.5E+02 0.0032 32.9 8.5 71 526-599 77-147 (390)
318 KOG2581 26S proteasome regulat 38.4 6.5E+02 0.014 28.7 18.6 213 343-594 168-399 (493)
319 KOG0686 COP9 signalosome, subu 37.7 4.4E+02 0.0095 30.0 12.1 127 426-557 125-256 (466)
320 COG3014 Uncharacterized protei 37.5 1.4E+02 0.003 33.1 8.1 89 471-559 42-154 (449)
321 PF12854 PPR_1: PPR repeat 37.3 49 0.0011 23.4 3.4 23 412-434 11-33 (34)
322 KOG3364 Membrane protein invol 36.6 1.4E+02 0.0029 28.9 7.0 70 485-559 30-100 (149)
323 KOG0551 Hsp90 co-chaperone CNS 36.3 2E+02 0.0044 31.8 9.2 98 453-559 84-182 (390)
324 cd02679 MIT_spastin MIT: domai 36.0 73 0.0016 27.6 4.8 40 356-440 1-40 (79)
325 COG3118 Thioredoxin domain-con 34.8 6.3E+02 0.014 27.5 16.4 123 414-559 140-265 (304)
326 COG5600 Transcription-associat 34.7 2.5E+02 0.0053 31.6 9.6 107 364-482 143-252 (413)
327 PF15015 NYD-SP12_N: Spermatog 34.6 1.4E+02 0.0031 33.9 7.9 66 415-480 183-258 (569)
328 PF10255 Paf67: RNA polymerase 34.4 72 0.0016 36.1 5.8 62 412-477 126-191 (404)
329 smart00101 14_3_3 14-3-3 homol 34.1 5.8E+02 0.013 26.9 18.5 178 414-603 7-203 (244)
330 PF09613 HrpB1_HrpK: Bacterial 33.3 3.5E+02 0.0076 26.7 9.6 56 490-557 13-71 (160)
331 KOG0686 COP9 signalosome, subu 32.9 1E+02 0.0022 34.9 6.4 100 351-477 157-256 (466)
332 PF14853 Fis1_TPR_C: Fis1 C-te 32.7 76 0.0016 25.3 4.1 27 411-437 4-30 (53)
333 PF04053 Coatomer_WDAD: Coatom 32.1 3.4E+02 0.0074 31.2 10.9 97 431-558 334-430 (443)
334 TIGR02561 HrpB1_HrpK type III 31.2 1.6E+02 0.0034 28.8 6.7 57 491-559 14-73 (153)
335 KOG1550 Extracellular protein 30.9 9.4E+02 0.02 28.3 20.9 197 413-640 293-504 (552)
336 KOG3807 Predicted membrane pro 29.7 1.8E+02 0.0039 32.1 7.4 90 343-443 217-307 (556)
337 KOG1538 Uncharacterized conser 28.9 8.4E+02 0.018 29.6 13.0 208 414-643 591-836 (1081)
338 KOG0376 Serine-threonine phosp 27.4 56 0.0012 37.4 3.4 92 355-484 15-106 (476)
339 KOG4642 Chaperone-dependent E3 27.3 1.8E+02 0.0039 30.8 6.7 69 530-605 44-112 (284)
340 KOG3364 Membrane protein invol 27.2 3.6E+02 0.0078 26.1 8.2 88 6-123 33-123 (149)
341 COG1157 FliI Flagellar biosynt 27.2 1.5E+02 0.0032 33.8 6.5 70 158-258 342-415 (441)
342 PF00244 14-3-3: 14-3-3 protei 26.8 4.8E+02 0.01 27.2 10.0 106 361-479 88-198 (236)
343 COG2256 MGS1 ATPase related to 26.3 8.7E+02 0.019 27.8 12.2 92 105-202 252-355 (436)
344 smart00101 14_3_3 14-3-3 homol 26.0 7.5E+02 0.016 26.1 11.3 103 361-478 90-199 (244)
345 PRK14562 haloacid dehalogenase 25.8 7E+02 0.015 25.5 10.8 32 351-382 37-68 (204)
346 cd02682 MIT_AAA_Arch MIT: doma 25.5 3E+02 0.0065 23.7 6.7 41 343-383 5-45 (75)
347 PF13812 PPR_3: Pentatricopept 25.3 1.1E+02 0.0024 20.6 3.5 25 412-436 5-29 (34)
348 KOG2053 Mitochondrial inherita 25.3 1.2E+03 0.026 29.2 13.9 133 462-617 21-153 (932)
349 PF01535 PPR: PPR repeat; Int 25.2 98 0.0021 20.2 3.2 25 412-436 4-28 (31)
350 TIGR00756 PPR pentatricopeptid 25.0 1.2E+02 0.0026 20.1 3.6 25 412-436 4-28 (35)
351 PF12739 TRAPPC-Trs85: ER-Golg 24.4 1.1E+03 0.023 26.7 17.3 148 412-561 212-401 (414)
352 KOG2561 Adaptor protein NUB1, 24.4 5.5E+02 0.012 29.5 10.2 129 449-578 162-314 (568)
353 PF10255 Paf67: RNA polymerase 23.7 1.1E+02 0.0025 34.6 5.0 36 407-442 163-198 (404)
354 COG4976 Predicted methyltransf 23.5 2.3E+02 0.005 29.9 6.6 148 541-712 6-153 (287)
355 cd02680 MIT_calpain7_2 MIT: do 23.0 1.4E+02 0.0031 25.6 4.3 30 411-440 9-38 (75)
356 PF04781 DUF627: Protein of un 22.6 6.3E+02 0.014 23.5 10.0 60 419-479 48-107 (111)
357 KOG1550 Extracellular protein 22.4 1.3E+03 0.028 27.1 14.8 157 410-597 214-390 (552)
358 KOG0276 Vesicle coat complex C 21.6 6.8E+02 0.015 30.0 10.5 79 453-556 669-747 (794)
359 COG5091 SGT1 Suppressor of G2 21.4 2.4E+02 0.0053 30.2 6.4 85 541-626 50-134 (368)
360 KOG1497 COP9 signalosome, subu 21.1 1.2E+03 0.025 26.0 19.0 134 530-668 103-241 (399)
361 PF14561 TPR_20: Tetratricopep 20.7 3.3E+02 0.0071 23.9 6.4 60 571-634 22-81 (90)
362 COG2178 Predicted RNA-binding 20.6 2.7E+02 0.0058 28.5 6.3 57 415-473 36-92 (204)
363 PF07219 HemY_N: HemY protein 20.4 4.5E+02 0.0098 23.7 7.4 37 568-607 56-92 (108)
364 PF13041 PPR_2: PPR repeat fam 20.2 1.8E+02 0.0039 21.9 4.1 26 412-437 7-32 (50)
365 KOG4563 Cell cycle-regulated h 20.2 3E+02 0.0065 30.8 7.0 62 529-590 40-102 (400)
No 1
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=5.4e-115 Score=926.03 Aligned_cols=617 Identities=39% Similarity=0.630 Sum_probs=555.1
Q ss_pred hhHHHHHHHhHHHHHhhc--cHhHHhHHHHHHhccCCCCChHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCC
Q 004943 2 EAVAEGLWGLADYHENKG--EIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIP 79 (722)
Q Consensus 2 ~~~~~~L~~lAe~~~~~~--~i~~ai~CLeA~l~~~~~l~p~~EA~~rLrla~iL~e~T~N~~~A~thLeka~~l~~~~~ 79 (722)
|+||++||||||+|||++ +|++|||||+|+|+|++ |-++|||||||+|.+||.||+|+++||+||||||+++++||
T Consensus 4 dAva~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~i--s~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip 81 (629)
T KOG2300|consen 4 DAVAEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQI--SFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIP 81 (629)
T ss_pred hHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCC--hHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccc
Confidence 599999999999999999 99999999999999999 88999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhHHHHHHHHHcC-CCchHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHhHhhhcCChHHHHHHHHhHHH
Q 004943 80 SCFELKCRTFSLLSQCYHLVG-AIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYV 158 (722)
Q Consensus 80 ~~~dlk~~~~~lLa~~y~~~~-~~~~~k~~l~k~i~~~~~~~~~~~~~~W~~~f~f~la~~~~~~~d~~~A~~~L~~g~~ 158 (722)
+|+|+||.+.||||++|++.+ +..++|.+++|+|+++++ .++|+|+|+||+|++|.+++|+.+|++.|..|+.
T Consensus 82 ~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~------~p~wsckllfQLaql~~idkD~~sA~elLavga~ 155 (629)
T KOG2300|consen 82 SFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQS------VPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAE 155 (629)
T ss_pred cHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcC------CchhhHHHHHHHHHHHhhhccchhHHHHHhcccc
Confidence 999999999999999999999 669999999999999998 7899999999999999999999999999999999
Q ss_pred HHhhcCChhHHHHHHHHHHHHHhcccCChhHHHHHHHhhhHHhhhcCccccccccchhhhhhHHHHHH-Hhhhhhhhhhh
Q 004943 159 CATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIFY-RLRICDYKNAA 237 (722)
Q Consensus 159 ~A~~~~~~~~~v~f~l~~~~~~L~~~~~~~~v~~~l~~~~~~~~~i~~~~~~~~~g~~~~~e~l~i~~-~l~ic~~~~~~ 237 (722)
.|...+.++++++|.++.+|+++|+| |..+|++.+++|+++|+ ++++.++++|+||||| +|++|.|...|
T Consensus 156 sAd~~~~~ylr~~ftls~~~ll~me~-d~~dV~~ll~~~~qi~~--------n~~sdk~~~E~LkvFyl~lql~yy~~~g 226 (629)
T KOG2300|consen 156 SADHICFPYLRMLFTLSMLMLLIMER-DDYDVEKLLQRCGQIWQ--------NISSDKTQKEMLKVFYLVLQLSYYLLPG 226 (629)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHHh--------ccCCChHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999997 78899999999999999 8888889999999999 89999999999
Q ss_pred hhhhhHHHHHHHhHHHHHHHHHHhhhhHHhhhhcCCCCCChhhhHHHHHHHHHHHHHHHhcccCcCcccccCCccccCCC
Q 004943 238 HHVDNLDAAMKADKQKMQEIQQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNA 317 (722)
Q Consensus 238 ~~v~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~lq~~l~~~~~~~~~~~~~l~~~~~~~~ 317 (722)
+ |+.+++|+ ||||++++++..++
T Consensus 227 q-~rt~k~~l-----------------------------------------kQLQ~siqtist~~--------------- 249 (629)
T KOG2300|consen 227 Q-VRTVKPAL-----------------------------------------KQLQDSIQTISTSS--------------- 249 (629)
T ss_pred c-hhhhHHHH-----------------------------------------HHHHHHHhccCCCC---------------
Confidence 9 99999998 68999999833111
Q ss_pred ccccCcccccCCCCCcccccCcchhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHH
Q 004943 318 RQAWGDKLVLAPSPMDGEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAI 397 (722)
Q Consensus 318 ~~~~~d~~~~~~~~~~~~WLpk~~l~aLvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~ 397 (722)
...++++...+++..|+||||+++|||||+++|+++|+.|+|++|.||.++++.. .+++...++
T Consensus 250 -~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q----~eklkq~d~----------- 313 (629)
T KOG2300|consen 250 -RGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQ----TEKLKQADL----------- 313 (629)
T ss_pred -CCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHH----Hhhcccccc-----------
Confidence 1134444444556669999999999999999999999999999999999999999 555554443
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCc--hhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004943 398 WMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPT--ILQACESMIEMLRGQYAHSVGCYSEAAFHYVE 475 (722)
Q Consensus 398 w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d--~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~ 475 (722)
+.+++.++++.+||++++|.+++|++.+|++.+.+++++|.++|. +++.+.+.+|+++|.|+++.|+|+.|+.||..
T Consensus 314 -~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~ 392 (629)
T KOG2300|consen 314 -MSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIE 392 (629)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHH
Confidence 457888999999999999999999999999999999999999998 88899999999999999999999999999999
Q ss_pred HHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004943 476 AAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAK 555 (722)
Q Consensus 476 AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~q 555 (722)
|++.+.....+|+|+.|+|++|++.|+.+.+.++++.++|..+.+. .+.+.++.++++.|...+.+|+++|||+++++
T Consensus 393 a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~--ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e 470 (629)
T KOG2300|consen 393 ATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSL--SSQRLEASILYVYGLFAFKQNDLNEAKRFLRE 470 (629)
T ss_pred HHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcc--hHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999854433 23445899999999999999999999999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCC--chhHhHH
Q 004943 556 GLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGD--RGNEMEN 633 (722)
Q Consensus 556 AL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd--~~~A~e~ 633 (722)
.|++++. .++-++++++|++||.++...||+.|+++++++|+++|+|++|.++|+|++.++.++|.+.|+ .+.+.+.
T Consensus 471 ~Lkmana-ed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~ 549 (629)
T KOG2300|consen 471 TLKMANA-EDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEA 549 (629)
T ss_pred HHhhcch-hhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 9999986 445599999999999999999999999999999999999999999999999999999999999 4555666
Q ss_pred HHHHHHHHHHHhHHHHHhhhchhhHHHHhhhcchhhccchhhHHhhhhcccccccccCCcccCCCCCCCCcccccccccC
Q 004943 634 DEYRRKKLDELQKRLADAYSSIHHIELISKVKLEVQQFHELDIKRAMANQSMSVNLDIPESIGLSTPLPVQSSSRLIDLD 713 (722)
Q Consensus 634 ~~~~~~~~~~l~~~~~~a~~~~~h~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (722)
+..+...++ ...|..+++|.++.-..++.++++.+-+. ...+|+|+.|||||| +||.+|.|+|||+|+|.+|
T Consensus 550 ~~~~ql~Sr-----~lla~~~i~~~~~~~pa~~ll~wfdgdPp--v~s~p~~~~~l~~pe-t~l~~~~p~~~ss~~~~~~ 621 (629)
T KOG2300|consen 550 FRKHQLQSR-----LLLADGSIHHIELVAPAHILLYWFDGDPP--VASAPSMQGNLDIPE-TSLEGPSPAPSSSRLVGLD 621 (629)
T ss_pred HHHHHHHHH-----HHHhccCcchHhhcccHHhhhhhccCCCc--cccCCccCCccCCCc-ccccCCCCCccccccccCc
Confidence 665444444 45555555555544444444444433332 457899999999999 9999999999999999999
Q ss_pred C-CCcccc
Q 004943 714 G-GRRGKR 720 (722)
Q Consensus 714 ~-~~~~~~ 720 (722)
+ +|||||
T Consensus 622 ~g~~~~~~ 629 (629)
T KOG2300|consen 622 TGKRWGKR 629 (629)
T ss_pred ccccccCC
Confidence 9 788886
No 2
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=100.00 E-value=2.8e-64 Score=586.49 Aligned_cols=562 Identities=22% Similarity=0.286 Sum_probs=460.8
Q ss_pred HHHHHHHhHHHHHhhc------------------cHhHHhHHHHHHhccCCCCChHHHHHHHHHHHHHHHhhcCChHHHH
Q 004943 4 VAEGLWGLADYHENKG------------------EIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAK 65 (722)
Q Consensus 4 ~~~~L~~lAe~~~~~~------------------~i~~ai~CLeA~l~~~~~l~p~~EA~~rLrla~iL~e~T~N~~~A~ 65 (722)
++..|++|||+|++.. -|++||+||+++++ +.+++|++||++|||||+||++||+|+++||
T Consensus 2 ~~~~ll~lAeey~~~A~~~~~~~~~~~~l~~Y~kLI~~ai~CL~~~~~-~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae 80 (608)
T PF10345_consen 2 YVDLLLSLAEEYLEKAHSLATKVKSEEQLKQYYKLIATAIKCLEAVLK-QFKLSPRQEARVRLRLASILLEETENLDLAE 80 (608)
T ss_pred hHHHHHHHHHHHHHHhHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 5788999999998875 47899999999996 3347999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcchhhhhhhhHHHHHHHHHcCCCchHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHhHhhhcCC
Q 004943 66 SHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGD 145 (722)
Q Consensus 66 thLeka~~l~~~~~~~~dlk~~~~~lLa~~y~~~~~~~~~k~~l~k~i~~~~~~~~~~~~~~W~~~f~f~la~~~~~~~d 145 (722)
+||+||+.+++. ++++|+||.++++|+++|++.|+++ +++.++++|+ +++++++..|.|.|+|.++.++...+|
T Consensus 81 ~~L~k~~~l~~~-~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~----~~~~~~~~~w~~~frll~~~l~~~~~d 154 (608)
T PF10345_consen 81 TYLEKAILLCER-HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIE----DSETYGHSAWYYAFRLLKIQLALQHKD 154 (608)
T ss_pred HHHHHHHHhccc-cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHH----HHhccCchhHHHHHHHHHHHHHHhccc
Confidence 999999999998 9999999999999999999999988 7777777764 466799999999999999998877799
Q ss_pred hHHHHHHHHhHHHHHhhcCChhHHHHHHHHHHHHHhcccCChhHHHHHHHhhhHHhhhcCccccccccchhhhhhHHHHH
Q 004943 146 YQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIF 225 (722)
Q Consensus 146 ~~~A~~~L~~g~~~A~~~~~~~~~v~f~l~~~~~~L~~~~~~~~v~~~l~~~~~~~~~i~~~~~~~~~g~~~~~e~l~i~ 225 (722)
+..|+++|++|.++|+++||++++++|+++++++|+++ .+++.+.+.+++|...+..+ +|.+.. ..+.|+++
T Consensus 155 ~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~-~~~~d~~~~l~~~~~~~~~~------q~~~~~-~~~qL~~~ 226 (608)
T PF10345_consen 155 YNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRR-GSPDDVLELLQRAIAQARSL------QLDPSV-HIPQLKAL 226 (608)
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHHHhhc------ccCCCC-CcHHHHHH
Confidence 99999999999999999999999999999999999997 55666777888998888754 233444 57999999
Q ss_pred H-HhhhhhhhhhhhhhhhHHHHHHHhHHHHHHHHHHhhhhHHhhhhcCCCCCChhhhHHHHHHHHHHHHHHHhc----cc
Q 004943 226 Y-RLRICDYKNAAHHVDNLDAAMKADKQKMQEIQQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRSL----ED 300 (722)
Q Consensus 226 ~-~l~ic~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~lq~~l~~~----~~ 300 (722)
+ +++||++...++ ++.+++++ ++||+.+++. .|
T Consensus 227 ~lll~l~~~l~~~~-~~~~~~~L-----------------------------------------~~lq~~~~~~~~~~~w 264 (608)
T PF10345_consen 227 FLLLDLCCSLQQGD-VKNSKQKL-----------------------------------------KQLQQFLDEIKKSPSW 264 (608)
T ss_pred HHHHHHHHHHHcCC-HHHHHHHH-----------------------------------------HHHHHHHHHhhcCccC
Confidence 9 899999999998 67777766 3444444331 23
Q ss_pred CcC--cccccCCccccCCCccccCcccccCCCCCcccccCcchhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHH
Q 004943 301 SSL--TGKEFLEPSYFGNARQAWGDKLVLAPSPMDGEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDAL 378 (722)
Q Consensus 301 ~~~--~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~WLpk~~l~aLvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~ 378 (722)
..| +|..|++... ++.-..+. ++.|+|||++++++|||+|||++++++|+.++|.||+++|++++++..
T Consensus 265 ~~~~~d~~i~l~~~~--------~~~~~~~~-~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~ 335 (608)
T PF10345_consen 265 PSWDEDGSIPLNIGE--------GSSNSGGT-PLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLK 335 (608)
T ss_pred CCcCCCeeEEeeccc--------ccccCCCc-eeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhh
Confidence 333 2233322110 00001112 678999999999999999999999999999999999999999987754
Q ss_pred HhcCCCCC--cccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCc-hhhhhHHHHHHH
Q 004943 379 LKLGITDG--VREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPT-ILQACESMIEML 455 (722)
Q Consensus 379 ~~lg~~~g--~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d-~~~~~~a~i~~l 455 (722)
.+.... .+-..+..+..|...+ +..++++++++.+.+|+|+.|.+.++++.+.+.+.|+ ......+.++|+
T Consensus 336 --~~~~~~~~~sl~~~~~~~~~~~~l----~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL 409 (608)
T PF10345_consen 336 --IKSPSAPSESLSEASERIQWLRYL----QCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYL 409 (608)
T ss_pred --ccCCCCCCcCHHHHHHhHHHHHHH----HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHH
Confidence 111111 1111234456675544 5666777899999999999999999999999999987 555778999999
Q ss_pred HHHHHHHhCCHHHHHHHHH--------HHHHhhcchhHHHHHHHHHHHHHHhcCChhH----HHHHHHHhcchhcccccc
Q 004943 456 RGQYAHSVGCYSEAAFHYV--------EAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTI 523 (722)
Q Consensus 456 lG~~~~alG~~~~Al~~f~--------~AL~l~~~~~~~A~allnla~v~l~~G~~e~----a~~aL~l~~~l~r~~~~~ 523 (722)
.|.|++++|++++|+.+|. .+.+.....+...++.+|+.+++...+.... +.+.++.++|.|..+++.
T Consensus 410 ~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~ 489 (608)
T PF10345_consen 410 LGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNS 489 (608)
T ss_pred HHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccH
Confidence 9999999999999999997 3334445556889999999999998777543 899999999998887654
Q ss_pred cChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Q 004943 524 NGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKK 603 (722)
Q Consensus 524 ~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkk 603 (722)
. . ..++.+...+.-+..+-..+++|++++++|+.+.+..+|.++.+++|+.||..++ .|+.+|..++..+|+++|++
T Consensus 490 ~-~-~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k 566 (608)
T PF10345_consen 490 Y-N-RTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKK 566 (608)
T ss_pred H-H-HHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHh
Confidence 3 2 2556666666666677888899999999999993369999999999999999999 78888888888889999999
Q ss_pred cCChhHHHH---HHHHHHHHHHHcCCchhHhHHHHHHHHH
Q 004943 604 LYDIPTQIW---ALSVLTALYQQLGDRGNEMENDEYRRKK 640 (722)
Q Consensus 604 i~D~~~q~~---al~~L~~l~~~~Gd~~~A~e~~~~~~~~ 640 (722)
..|...++| +...+.+.|...|+.++|.+..+.+.+.
T Consensus 567 ~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~~ 606 (608)
T PF10345_consen 567 SSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDRV 606 (608)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh
Confidence 988888999 6678899999999999999877766554
No 3
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.70 E-value=3.2e-16 Score=166.73 Aligned_cols=264 Identities=17% Similarity=0.133 Sum_probs=225.6
Q ss_pred HHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHHHH
Q 004943 351 VILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEA 430 (722)
Q Consensus 351 ~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~~ 430 (722)
+-.+.+.+.|.+|.+|+.--|.+ .+.+|+..| ++-.--|||-..-+.|+|++|+.+
T Consensus 62 GNAyfyL~DY~kAl~yH~hDltl----ar~lgdklG--------------------EAKssgNLGNtlKv~G~fdeA~~c 117 (639)
T KOG1130|consen 62 GNAYFYLKDYEKALKYHTHDLTL----ARLLGDKLG--------------------EAKSSGNLGNTLKVKGAFDEALTC 117 (639)
T ss_pred cchhhhHhhHHHHHhhhhhhHHH----HHHhcchhc--------------------cccccccccchhhhhcccchHHHH
Confidence 44556678899999999999999 677777766 444445789999999999999999
Q ss_pred HHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCC--------------------HHHHHHHHHHHHHhhcchh---HHH
Q 004943 431 LVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGC--------------------YSEAAFHYVEAAKITESKS---MQA 487 (722)
Q Consensus 431 l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~--------------------~~~Al~~f~~AL~l~~~~~---~~A 487 (722)
-.+=+++.++++|. ..++.++|++|-+|++.|+ ++.|...|.+-|.+.+..+ ...
T Consensus 118 c~rhLd~areLgDr--v~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqG 195 (639)
T KOG1130|consen 118 CFRHLDFARELGDR--VLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQG 195 (639)
T ss_pred HHHHhHHHHHHhHH--HhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhc
Confidence 99999999999998 5689999999999999885 3477788888777766554 556
Q ss_pred HHHHHHHHHHHhcCChhHHHHH----HHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 004943 488 MCHAYAAVSYFCIGDAESSSQA----IDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNH 563 (722)
Q Consensus 488 ~allnla~v~l~~G~~e~a~~a----L~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~ 563 (722)
-|..|+|..|.+.||++.+-.+ |++.+++ ++.-.+--++-++|..|...|.++.|.+||..+|.+|. +
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ef-------GDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAi-e 267 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEF-------GDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAI-E 267 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHh-------hhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHH-H
Confidence 7889999999999999874433 4444444 21211224778899999999999999999999999997 7
Q ss_pred cCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHHHHHH
Q 004943 564 MGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDE 643 (722)
Q Consensus 564 ~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~ 643 (722)
+||+-.+|++-+.||.+|.-..+++.|..++..=+++|+.++|+.+++++.-.|+..|.+.|.+++|+-..+.+.+.+.+
T Consensus 268 lg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~e 347 (639)
T KOG1130|consen 268 LGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLE 347 (639)
T ss_pred hcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HhHHH
Q 004943 644 LQKRL 648 (722)
Q Consensus 644 l~~~~ 648 (722)
++...
T Consensus 348 v~D~s 352 (639)
T KOG1130|consen 348 VNDTS 352 (639)
T ss_pred hCCcc
Confidence 77654
No 4
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.70 E-value=9.7e-15 Score=164.92 Aligned_cols=272 Identities=15% Similarity=0.111 Sum_probs=220.0
Q ss_pred hHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhh
Q 004943 342 VYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTR 421 (722)
Q Consensus 342 l~aLvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~ 421 (722)
+.++.+ -+.-+..+|+|++|+.-++.|++.+.+. .|... .....++.++|.+++..
T Consensus 199 ~~~~~~--La~~y~~~g~~e~A~~l~k~Al~~l~k~---~G~~h-------------------l~va~~l~~~a~~y~~~ 254 (508)
T KOG1840|consen 199 LRTLRN--LAEMYAVQGRLEKAEPLCKQALRILEKT---SGLKH-------------------LVVASMLNILALVYRSL 254 (508)
T ss_pred HHHHHH--HHHHHHHhccHHHHHHHHHHHHHHHHHc---cCccC-------------------HHHHHHHHHHHHHHHHh
Confidence 466666 5677788999999999999999995442 22111 11344556799999999
Q ss_pred CCHHHHHHHHHHHHHHHHhC-CchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcch-----hHHHHHHHHHHH
Q 004943 422 SGFVEAQEALVQMKNWFIRF-PTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK-----SMQAMCHAYAAV 495 (722)
Q Consensus 422 g~~~eA~~~l~~Al~l~~~~-~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~-----~~~A~allnla~ 495 (722)
++|++|...|++|+.+.++. |.. ....+.++.+++..+...|+|++|..+|..|+.+.... +..+..+.|++.
T Consensus 255 ~k~~eAv~ly~~AL~i~e~~~G~~-h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~ 333 (508)
T KOG1840|consen 255 GKYDEAVNLYEEALTIREEVFGED-HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAA 333 (508)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHH
Confidence 99999999999999999985 321 13467899999999999999999999999999887652 355677888999
Q ss_pred HHHhcCChhH----HHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC-hHHH
Q 004943 496 SYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGN-LQLV 570 (722)
Q Consensus 496 v~l~~G~~e~----a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd-~~l~ 570 (722)
++...+++++ +..+++++... .+... ...+....++|..++.+|++.||.+.+.+|+++.++..|- +..+
T Consensus 334 ~~~~~~~~Eea~~l~q~al~i~~~~---~g~~~--~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~ 408 (508)
T KOG1840|consen 334 ILQSMNEYEEAKKLLQKALKIYLDA---PGEDN--VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGV 408 (508)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHhh---ccccc--hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhh
Confidence 9999999887 56666666522 11111 1367889999999999999999999999999998854432 7899
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHc-CChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHHHHHH
Q 004943 571 SQYLTILGNLALALHDTVQAREILRSSLTLAKKL-YDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDE 643 (722)
Q Consensus 571 a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki-~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~ 643 (722)
+..++.||..|...+++++|..++..+..+.+.. +|.+.-..++.+|+.+|+..|+++.|.+..+...+..+.
T Consensus 409 ~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~ 482 (508)
T KOG1840|consen 409 GKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQ 482 (508)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999554 455567889999999999999999999988877766554
No 5
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.65 E-value=1.4e-14 Score=160.33 Aligned_cols=234 Identities=15% Similarity=0.099 Sum_probs=195.9
Q ss_pred HHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCH
Q 004943 345 LVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGF 424 (722)
Q Consensus 345 Lvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~ 424 (722)
=+|+=-|.++-..+.||+|..++++|+.+ ++. .+.++-|+|++|..+|..
T Consensus 253 dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l----------rpn--------------------~A~a~gNla~iYyeqG~l 302 (966)
T KOG4626|consen 253 DAYINLGNVYKEARIFDRAVSCYLRALNL----------RPN--------------------HAVAHGNLACIYYEQGLL 302 (966)
T ss_pred HHHhhHHHHHHHHhcchHHHHHHHHHHhc----------CCc--------------------chhhccceEEEEeccccH
Confidence 34555566667777788888888888776 333 455667899999999999
Q ss_pred HHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChh
Q 004943 425 VEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAE 504 (722)
Q Consensus 425 ~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e 504 (722)
+.|+.+|++++++--.+||. ++++|......|+.++|++.|.+||++... .+.+.+|+|.+|..+|..+
T Consensus 303 dlAI~~Ykral~~~P~F~~A--------y~NlanALkd~G~V~ea~~cYnkaL~l~p~---hadam~NLgni~~E~~~~e 371 (966)
T KOG4626|consen 303 DLAIDTYKRALELQPNFPDA--------YNNLANALKDKGSVTEAVDCYNKALRLCPN---HADAMNNLGNIYREQGKIE 371 (966)
T ss_pred HHHHHHHHHHHhcCCCchHH--------HhHHHHHHHhccchHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHhccch
Confidence 99999999999987666664 778888888889999999999999887654 4778899999999999998
Q ss_pred HHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhC
Q 004943 505 SSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALAL 584 (722)
Q Consensus 505 ~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~ 584 (722)
++.+.......++. +-|++.+++|.++..||++++|..+|.+||++ + ..-|.++++||.+|-.+
T Consensus 372 ~A~~ly~~al~v~p---------~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~-----P~fAda~~NmGnt~ke~ 435 (966)
T KOG4626|consen 372 EATRLYLKALEVFP---------EFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--K-----PTFADALSNMGNTYKEM 435 (966)
T ss_pred HHHHHHHHHHhhCh---------hhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--C-----chHHHHHHhcchHHHHh
Confidence 87777776666522 25789999999999999999999999999999 2 66788999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHHHH
Q 004943 585 HDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKL 641 (722)
Q Consensus 585 g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~ 641 (722)
|+...|..++..|..+ .++-+-++..|+-+|+..|+...|...|+.+.+..
T Consensus 436 g~v~~A~q~y~rAI~~------nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 436 GDVSAAIQCYTRAIQI------NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred hhHHHHHHHHHHHHhc------CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 9999999999988764 46667899999999999999999999998887653
No 6
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.60 E-value=1.4e-11 Score=144.77 Aligned_cols=246 Identities=15% Similarity=0.130 Sum_probs=187.3
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhC
Q 004943 343 YALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRS 422 (722)
Q Consensus 343 ~aLvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g 422 (722)
.+.+|..-+.+....|++++|..++++++.. + +. ....+.++|.++...|
T Consensus 330 ~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l---------~-P~--------------------~~~~~~~la~~~~~~g 379 (615)
T TIGR00990 330 EAIALNLRGTFKCLKGKHLEALADLSKSIEL---------D-PR--------------------VTQSYIKRASMNLELG 379 (615)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---------C-CC--------------------cHHHHHHHHHHHHHCC
Confidence 4566777888999999999999999999887 1 22 1122345789999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCC
Q 004943 423 GFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGD 502 (722)
Q Consensus 423 ~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~ 502 (722)
++++|++.+.+++++ .|+. +.+++.+|.++...|++++|+..|++++.+..+. ..++.++|.++...|+
T Consensus 380 ~~~eA~~~~~~al~~---~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~---~~~~~~la~~~~~~g~ 448 (615)
T TIGR00990 380 DPDKAEEDFDKALKL---NSED-----PDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF---IFSHIQLGVTQYKEGS 448 (615)
T ss_pred CHHHHHHHHHHHHHh---CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC---HHHHHHHHHHHHHCCC
Confidence 999999999999886 3432 3568899999999999999999999999875443 3457789999999999
Q ss_pred hhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HH
Q 004943 503 AESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGN-LA 581 (722)
Q Consensus 503 ~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~-~~ 581 (722)
++++...++.+..... + -..+++.+|.++..+|++++|...|++|+++.. ...........+...+. .+
T Consensus 449 ~~eA~~~~~~al~~~P---~------~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p-~~~~~~~~~~~l~~~a~~~~ 518 (615)
T TIGR00990 449 IASSMATFRRCKKNFP---E------APDVYNYYGELLLDQNKFDEAIEKFDTAIELEK-ETKPMYMNVLPLINKALALF 518 (615)
T ss_pred HHHHHHHHHHHHHhCC---C------ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-ccccccccHHHHHHHHHHHH
Confidence 9886666665544311 1 235788899999999999999999999999943 22222222222233333 34
Q ss_pred HhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHHHHHHHh
Q 004943 582 LALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDELQ 645 (722)
Q Consensus 582 ~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~l~ 645 (722)
...|++++|+..++.|+.+- ++. ..+...|+.++...|++++|..+|+.+.+......
T Consensus 519 ~~~~~~~eA~~~~~kAl~l~---p~~---~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~ 576 (615)
T TIGR00990 519 QWKQDFIEAENLCEKALIID---PEC---DIAVATMAQLLLQQGDVDEALKLFERAAELARTEG 576 (615)
T ss_pred HHhhhHHHHHHHHHHHHhcC---CCc---HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHH
Confidence 44699999999999998862 222 45778899999999999999999999988876533
No 7
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.60 E-value=1.8e-14 Score=153.50 Aligned_cols=240 Identities=15% Similarity=0.089 Sum_probs=207.8
Q ss_pred HHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcch---hHH
Q 004943 410 FLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK---SMQ 486 (722)
Q Consensus 410 lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~---~~~ 486 (722)
+...||-+|...+||.+|+++...-+.+.+..+|. .+++-.--++|-...-+|.|++|+..+...|.+++.. .++
T Consensus 57 IYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdk--lGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e 134 (639)
T KOG1130|consen 57 IYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDK--LGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLE 134 (639)
T ss_pred HHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcch--hccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhh
Confidence 33568999999999999999999999999999998 4678888999999999999999999999998877655 488
Q ss_pred HHHHHHHHHHHHhcCC------hh-------HHHHHHHHhcchhccc----ccccChHHHHHHHHHHHHHHHhcCCHHHH
Q 004943 487 AMCHAYAAVSYFCIGD------AE-------SSSQAIDLIGPVYQMK----DTINGVREEASLHFAYGLLLMRQQDFQEA 549 (722)
Q Consensus 487 A~allnla~v~l~~G~------~e-------~a~~aL~l~~~l~r~~----~~~~~~~~~A~al~~lG~~~~~~G~~~eA 549 (722)
+-++.|+|.||+..|. ++ +...+|+.+-.+|-.. .+.++.-.+.-++-++|..|...|++.+|
T Consensus 135 ~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~a 214 (639)
T KOG1130|consen 135 SRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQA 214 (639)
T ss_pred hHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHH
Confidence 9999999999998885 21 2555665554433211 11122223456889999999999999999
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchh
Q 004943 550 RNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGN 629 (722)
Q Consensus 550 k~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~ 629 (722)
..+..+-|.+++ +.||+-.+-.+..+||..|.=.|+.+-|.++++.++.+|.+++++..++.+-..|+..|--..++++
T Consensus 215 i~~H~~RL~ia~-efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~k 293 (639)
T KOG1130|consen 215 IHFHKLRLEIAQ-EFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQK 293 (639)
T ss_pred HHHHHHHHHHHH-HhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHH
Confidence 999999999987 7999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHhHHHHHhh
Q 004943 630 EMENDEYRRKKLDELQKRLADAY 652 (722)
Q Consensus 630 A~e~~~~~~~~~~~l~~~~~~a~ 652 (722)
|.+++..+.+++++|..+.-+.+
T Consensus 294 AI~Yh~rHLaIAqeL~DriGe~R 316 (639)
T KOG1130|consen 294 AITYHQRHLAIAQELEDRIGELR 316 (639)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHH
Confidence 99999999999999999876654
No 8
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.59 E-value=2.2e-11 Score=152.74 Aligned_cols=419 Identities=15% Similarity=0.058 Sum_probs=246.5
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHhcCCcchhhhhhhhHHHHHHHHHcCCCchHHHHHHHHHHHhhhhhcccccchh----
Q 004943 53 LLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLW---- 128 (722)
Q Consensus 53 iL~e~T~N~~~A~thLeka~~l~~~~~~~~dlk~~~~~lLa~~y~~~~~~~~~k~~l~k~i~~~~~~~~~~~~~~W---- 128 (722)
..+....++++|+..|++++.+ -|.. ..+...|+.+|.+.|....+...+.++++..- +......|
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~---~P~~----~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p---~~~~~~~~~~ll 346 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRA---NPKD----SEALGALGQAYSQQGDRARAVAQFEKALALDP---HSSNRDKWESLL 346 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh---CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CccchhHHHHHH
Confidence 3445578999999999998643 2333 34667799999999988777778888886532 22222245
Q ss_pred ---HHHHhhHHHhHhhhcCChHHHHHHHHhHHHHHhhcCChhHHHHHHHHHHHHHhcccCChhHHHHHHHhhhHHhhhcC
Q 004943 129 ---SCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWESID 205 (722)
Q Consensus 129 ---~~~f~f~la~~~~~~~d~~~A~~~L~~g~~~A~~~~~~~~~v~f~l~~~~~~L~~~~~~~~v~~~l~~~~~~~~~i~ 205 (722)
.|...+.++.++...|++..|++.+++.....- +++ .+++.+...+... .++++..+...++..+ .
T Consensus 347 ~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P--~~~--~a~~~Lg~~~~~~---g~~~eA~~~y~~aL~~----~ 415 (1157)
T PRK11447 347 KVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN--TDS--YAVLGLGDVAMAR---KDYAAAERYYQQALRM----D 415 (1157)
T ss_pred HhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCH--HHHHHHHHHHHHC---CCHHHHHHHHHHHHHh----C
Confidence 344455678888899999999999999666522 222 3444454444333 4455554444333222 1
Q ss_pred ccccccccchhhhhhHHHHHHHhhhhhhhhhhhhhhhHHHHHHHhHHHHHHHHHHhhhhHHhhhhcCCCCCChhhhHHHH
Q 004943 206 PNRRGQCLGLLFYNELLHIFYRLRICDYKNAAHHVDNLDAAMKADKQKMQEIQQLSSELDALNQSLSRPDLPSRERSALA 285 (722)
Q Consensus 206 ~~~~~~~~g~~~~~e~l~i~~~l~ic~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~ 285 (722)
+.....+ ..+-.+|. ..+ .+.++ ..++ .+.. ..+..
T Consensus 416 p~~~~a~-------~~L~~l~~--------~~~----~~~A~--------------~~l~----~l~~-----~~~~~-- 451 (1157)
T PRK11447 416 PGNTNAV-------RGLANLYR--------QQS----PEKAL--------------AFIA----SLSA-----SQRRS-- 451 (1157)
T ss_pred CCCHHHH-------HHHHHHHH--------hcC----HHHHH--------------HHHH----hCCH-----HHHHH--
Confidence 1100000 00000010 000 00000 0000 0000 00000
Q ss_pred HHHHHHHHHHHhcccCcCcccccCCccccCCCccccCcccccCCCCCcccccCcchhHHHHHHHHHHhhccCCChHHHHH
Q 004943 286 GRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNARQAWGDKLVLAPSPMDGEWLPKSAVYALVDLMVVILGRPKGLFKECMQ 365 (722)
Q Consensus 286 ~~~~~lq~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~WLpk~~l~aLvylls~~~~~~kg~~~kA~k 365 (722)
....... +..-.+..-+..+...|++++|.+
T Consensus 452 --~~~~~~~-----------------------------------------------l~~~~~~~~a~~~~~~g~~~eA~~ 482 (1157)
T PRK11447 452 --IDDIERS-----------------------------------------------LQNDRLAQQAEALENQGKWAQAAE 482 (1157)
T ss_pred --HHHHHHH-----------------------------------------------hhhhHHHHHHHHHHHCCCHHHHHH
Confidence 0000000 000112233455667888888888
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchh
Q 004943 366 RIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTIL 445 (722)
Q Consensus 366 ~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~ 445 (722)
+++++++. ++.. ..++.+++.++...|++++|.+.++++++. .|+.
T Consensus 483 ~~~~Al~~---------~P~~---------------------~~~~~~LA~~~~~~G~~~~A~~~l~~al~~---~P~~- 528 (1157)
T PRK11447 483 LQRQRLAL---------DPGS---------------------VWLTYRLAQDLRQAGQRSQADALMRRLAQQ---KPND- 528 (1157)
T ss_pred HHHHHHHh---------CCCC---------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCC-
Confidence 88888876 1121 112345788888888888888888887753 3332
Q ss_pred hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcc-------------------------------------hhHHHH
Q 004943 446 QACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES-------------------------------------KSMQAM 488 (722)
Q Consensus 446 ~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~-------------------------------------~~~~A~ 488 (722)
+..++..|.+....|++++|+.+++.......+ ......
T Consensus 529 ----~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~ 604 (1157)
T PRK11447 529 ----PEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTR 604 (1157)
T ss_pred ----HHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCch
Confidence 234566677777777777777777542110000 000112
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChH
Q 004943 489 CHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQ 568 (722)
Q Consensus 489 allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~ 568 (722)
...++|.++...|+++++...++.+... .++ -..+++.+|.++...|++.+|...++++++... +
T Consensus 605 ~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~-------~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p----~-- 669 (1157)
T PRK11447 605 IDLTLADWAQQRGDYAAARAAYQRVLTR--EPG-------NADARLGLIEVDIAQGDLAAARAQLAKLPATAN----D-- 669 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC-------CHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC----C--
Confidence 3456777777777777665555544443 111 124677888888888899999888887766521 1
Q ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHH
Q 004943 569 LVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRK 639 (722)
Q Consensus 569 l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~ 639 (722)
...+...+|.++...|++++|...++.++..+.+.++......++..+++++...|++++|.+.|+.++.
T Consensus 670 -~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 670 -SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred -ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1235667889999999999999999998887765554333355667789999999999999999988865
No 9
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.57 E-value=1.1e-12 Score=148.29 Aligned_cols=238 Identities=17% Similarity=0.145 Sum_probs=193.0
Q ss_pred HHHHHhhHHHHHhhCCHHHHHHHHHHHHHHHHh-CCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcch---
Q 004943 408 MQFLENKVAVELTRSGFVEAQEALVQMKNWFIR-FPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK--- 483 (722)
Q Consensus 408 a~lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~-~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~--- 483 (722)
..++.+++..+..+|+|++|...+++|+++... .|. -....+.+.+..|.++..+++|++|...|++|+.+..+.
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~-~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGL-KHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCc-cCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 334455899999999999999999999998544 442 112356677789999999999999999999999877533
Q ss_pred --hHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhccc-ccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 004943 484 --SMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMK-DTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 560 (722)
Q Consensus 484 --~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~-~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la 560 (722)
...+..+.|||.+|...|+++++...++.+..++... +..++ +.+..+..+|.++...+++++|+.+++++|++.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~--~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHP--EVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChH--HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 3788999999999999999876444444443333321 11121 256789999999999999999999999999997
Q ss_pred HHhcCChH-HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCC--hhHHHHHHHHHHHHHHHcCCchhHhHHHHHH
Q 004943 561 HNHMGNLQ-LVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYD--IPTQIWALSVLTALYQQLGDRGNEMENDEYR 637 (722)
Q Consensus 561 ~~~~gd~~-l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D--~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~ 637 (722)
....|... .++-+...||+.|+.+|++.+|++++++|+++.+..++ .+...-.+..|+..|-..+.+++|...|..+
T Consensus 356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~ 435 (508)
T KOG1840|consen 356 LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA 435 (508)
T ss_pred HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 76667644 89999999999999999999999999999999999987 5555677889999999999999999999999
Q ss_pred HHHHHHHhHHH
Q 004943 638 RKKLDELQKRL 648 (722)
Q Consensus 638 ~~~~~~l~~~~ 648 (722)
..+.....+++
T Consensus 436 ~~i~~~~g~~~ 446 (508)
T KOG1840|consen 436 KDIMKLCGPDH 446 (508)
T ss_pred HHHHHHhCCCC
Confidence 99886655443
No 10
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.57 E-value=5.8e-11 Score=141.69 Aligned_cols=494 Identities=15% Similarity=0.128 Sum_probs=251.9
Q ss_pred HHHHHHhHHHHHhhccHhHHhHHHHHHhccCCCCChHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhh
Q 004943 5 AEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFEL 84 (722)
Q Consensus 5 ~~~L~~lAe~~~~~~~i~~ai~CLeA~l~~~~~l~p~~EA~~rLrla~iL~e~T~N~~~A~thLeka~~l~~~~~~~~dl 84 (722)
+..++..|..+...+++..|+.+++.+++..| ... .++..+|.+++. ..++++|..+|+++... .+..
T Consensus 22 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p---~~~--~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~---~~~~--- 89 (899)
T TIGR02917 22 PESLIEAAKSYLQKNKYKAAIIQLKNALQKDP---NDA--EARFLLGKIYLA-LGDYAAAEKELRKALSL---GYPK--- 89 (899)
T ss_pred HHHHHHHHHHHHHcCChHhHHHHHHHHHHhCC---CCH--HHHHHHHHHHHH-cCCHHHHHHHHHHHHHc---CCCh---
Confidence 34567778888889999999999999997655 222 467778888887 79999999999998532 1111
Q ss_pred hhhhhHHHHHHHHHcCCCchHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHhHhhhcCChHHHHHHHHhHHHHHhhcC
Q 004943 85 KCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEIS 164 (722)
Q Consensus 85 k~~~~~lLa~~y~~~~~~~~~k~~l~k~i~~~~~~~~~~~~~~W~~~f~f~la~~~~~~~d~~~A~~~L~~g~~~A~~~~ 164 (722)
-.....++++|...|... ++++...... .+.....-...+.++..+...|++..|...++.......
T Consensus 90 -~~~~~~~a~~~~~~g~~~-------~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--- 156 (899)
T TIGR02917 90 -NQVLPLLARAYLLQGKFQ-------QVLDELPGKT--LLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDP--- 156 (899)
T ss_pred -hhhHHHHHHHHHHCCCHH-------HHHHhhcccc--cCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---
Confidence 234567899999988654 3333322110 012233445566788888889999999998887654422
Q ss_pred ChhHHHHHHHHHHHHHhcccCChhHHHHHHHhhhHHhhhcCccccccccchhhhhhHHHHHHHhhhhhhhhhhhhhhhHH
Q 004943 165 YPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIFYRLRICDYKNAAHHVDNLD 244 (722)
Q Consensus 165 ~~~~~v~f~l~~~~~~L~~~~~~~~v~~~l~~~~~~~~~i~~~~~~~~~g~~~~~e~l~i~~~l~ic~~~~~~~~v~~~~ 244 (722)
.....++.++..+... .+++.+...+.++ ++ +.+... ..++. ....+...|+ .+..-
T Consensus 157 -~~~~~~~~la~~~~~~---~~~~~A~~~~~~~---~~-~~~~~~-------------~~~~~-~~~~~~~~g~-~~~A~ 213 (899)
T TIGR02917 157 -RSLYAKLGLAQLALAE---NRFDEARALIDEV---LT-ADPGNV-------------DALLL-KGDLLLSLGN-IELAL 213 (899)
T ss_pred -CChhhHHHHHHHHHHC---CCHHHHHHHHHHH---HH-hCCCCh-------------HHHHH-HHHHHHhcCC-HHHHH
Confidence 2334555555544333 4455554444443 22 111100 01111 0111112222 11111
Q ss_pred HHHHHhHHHHHHHHHHhhhhHHhhhhcCCCCCChhhhHHHHHHHHHHHHHHHhcccCcCcccccCCccccCCCccccCcc
Q 004943 245 AAMKADKQKMQEIQQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNARQAWGDK 324 (722)
Q Consensus 245 ~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~lq~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~d~ 324 (722)
.+..++...-|.-......+- .+-+..++. +.. ...+...++.
T Consensus 214 ~~~~~a~~~~p~~~~~~~~~~--~~~~~~g~~-----~~A---~~~~~~~~~~--------------------------- 256 (899)
T TIGR02917 214 AAYRKAIALRPNNPAVLLALA--TILIEAGEF-----EEA---EKHADALLKK--------------------------- 256 (899)
T ss_pred HHHHHHHhhCCCCHHHHHHHH--HHHHHcCCH-----HHH---HHHHHHHHHh---------------------------
Confidence 112111000000000000000 000000000 000 0001111100
Q ss_pred cccCCCCCcccccCcchhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHH----------HHhcCCCCCcccchhhh
Q 004943 325 LVLAPSPMDGEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDA----------LLKLGITDGVREVDLQH 394 (722)
Q Consensus 325 ~~~~~~~~~~~WLpk~~l~aLvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~----------~~~lg~~~g~~e~~l~~ 394 (722)
. |.. ..++++.+......|++++|...++++++.-.+. ....|+... +
T Consensus 257 ---~---------~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~---A---- 314 (899)
T TIGR02917 257 ---A---------PNS---PLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQ---A---- 314 (899)
T ss_pred ---C---------CCC---chHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHH---H----
Confidence 0 000 0111222333334455555555555444330000 000000000 0
Q ss_pred hHHHHHHHHH--HHHHHHHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHH
Q 004943 395 SAIWMAGVYL--MLLMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFH 472 (722)
Q Consensus 395 ~~~w~~~~y~--~l~a~lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~ 472 (722)
...+. .+.- --.......++.++...|++++|.+.+.++++. .|+ .+.+++.+|.++...|++++|...
T Consensus 315 ~~~~~-~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~-----~~~~~~~l~~~~~~~g~~~~A~~~ 385 (899)
T TIGR02917 315 YQYLN-QILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGL---DPD-----DPAALSLLGEAYLALGDFEKAAEY 385 (899)
T ss_pred HHHHH-HHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCC-----CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 00000 0000 000111234566666666666666666665542 122 134566677777777777777777
Q ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 004943 473 YVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNR 552 (722)
Q Consensus 473 f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~ 552 (722)
|.+++....+. ..+..++|.++...|+++.+...++.+..... + ...+...++..+...|++++|...
T Consensus 386 ~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~---~------~~~~~~~l~~~~~~~~~~~~A~~~ 453 (899)
T TIGR02917 386 LAKATELDPEN---AAARTQLGISKLSQGDPSEAIADLETAAQLDP---E------LGRADLLLILSYLRSGQFDKALAA 453 (899)
T ss_pred HHHHHhcCCCC---HHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC---c------chhhHHHHHHHHHhcCCHHHHHHH
Confidence 77766543322 33455667777777777665555554433211 0 112344556667777888888777
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhH
Q 004943 553 LAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEME 632 (722)
Q Consensus 553 L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e 632 (722)
+.+.++.. -. ...+++.+|.++...|++++|.+.++.++... ++ ...+...++.++...|++++|.+
T Consensus 454 ~~~~~~~~---~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~---~~~~~~~la~~~~~~g~~~~A~~ 520 (899)
T TIGR02917 454 AKKLEKKQ---PD----NASLHNLLGAIYLGKGDLAKAREAFEKALSIE---PD---FFPAAANLARIDIQEGNPDDAIQ 520 (899)
T ss_pred HHHHHHhC---CC----CcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC---CC---cHHHHHHHHHHHHHCCCHHHHHH
Confidence 77765431 11 23577889999999999999999999988642 22 23466677888888888888877
Q ss_pred HHHHHHH
Q 004943 633 NDEYRRK 639 (722)
Q Consensus 633 ~~~~~~~ 639 (722)
.++....
T Consensus 521 ~~~~~~~ 527 (899)
T TIGR02917 521 RFEKVLT 527 (899)
T ss_pred HHHHHHH
Confidence 7766543
No 11
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.55 E-value=1.6e-10 Score=137.84 Aligned_cols=129 Identities=16% Similarity=0.110 Sum_probs=68.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChH
Q 004943 489 CHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQ 568 (722)
Q Consensus 489 allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~ 568 (722)
.+.++|.++...|+++.+.+.++.+.... + . -..+++.+|.++...|++++|...++++++..- .
T Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~---~----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~--- 531 (899)
T TIGR02917 467 LHNLLGAIYLGKGDLAKAREAFEKALSIE--P---D----FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP---K--- 531 (899)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhC--C---C----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc---C---
Confidence 34455555555555555444444333220 0 0 113455566666666666666666666655411 1
Q ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHH
Q 004943 569 LVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRK 639 (722)
Q Consensus 569 l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~ 639 (722)
...++..++.++...|+.++|...++.++... ++ .......++.+|...|++++|.+.++...+
T Consensus 532 -~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 595 (899)
T TIGR02917 532 -NLRAILALAGLYLRTGNEEEAVAWLEKAAELN---PQ---EIEPALALAQYYLGKGQLKKALAILNEAAD 595 (899)
T ss_pred -cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cc---chhHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 12355566666666666666666666655432 11 123445566777777777777766665543
No 12
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.53 E-value=2.1e-10 Score=144.11 Aligned_cols=203 Identities=13% Similarity=0.050 Sum_probs=143.6
Q ss_pred HHHHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHH
Q 004943 408 MQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQA 487 (722)
Q Consensus 408 a~lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A 487 (722)
...+..+|.++...|++++|++.+++++++ .|+. +.+++.+|.++...|++++|...|+++++...+..
T Consensus 461 ~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~---~P~~-----~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~--- 529 (1157)
T PRK11447 461 NDRLAQQAEALENQGKWAQAAELQRQRLAL---DPGS-----VWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDP--- 529 (1157)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---
Confidence 334567899999999999999999999986 4543 35688999999999999999999999887543321
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhcc-------------------------------------hhcccccccChHHHH
Q 004943 488 MCHAYAAVSYFCIGDAESSSQAIDLIGP-------------------------------------VYQMKDTINGVREEA 530 (722)
Q Consensus 488 ~allnla~v~l~~G~~e~a~~aL~l~~~-------------------------------------l~r~~~~~~~~~~~A 530 (722)
.+..+.|..+...|+++++...++.+.+ +++...+ ..
T Consensus 530 ~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~------~~ 603 (1157)
T PRK11447 530 EQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPP------ST 603 (1157)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCC------Cc
Confidence 1122233333333443332222222110 0000111 11
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHH
Q 004943 531 SLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQ 610 (722)
Q Consensus 531 ~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q 610 (722)
..++.+|.++...|++++|...|+++++.. -.| ..++..||.++...|++++|++.++.++... +|.
T Consensus 604 ~~~~~La~~~~~~g~~~~A~~~y~~al~~~---P~~----~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~---p~~--- 670 (1157)
T PRK11447 604 RIDLTLADWAQQRGDYAAARAAYQRVLTRE---PGN----ADARLGLIEVDIAQGDLAAARAQLAKLPATA---NDS--- 670 (1157)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHhccC---CCC---
Confidence 356789999999999999999999999872 122 3578899999999999999999999776532 232
Q ss_pred HHHHHHHHHHHHHcCCchhHhHHHHHHHHH
Q 004943 611 IWALSVLTALYQQLGDRGNEMENDEYRRKK 640 (722)
Q Consensus 611 ~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~ 640 (722)
..+...++.++...|++++|.+.++.....
T Consensus 671 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 671 LNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 335667888999999999999999887764
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.42 E-value=4.8e-10 Score=131.88 Aligned_cols=232 Identities=13% Similarity=0.067 Sum_probs=174.0
Q ss_pred ccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHHHHHHHH
Q 004943 355 RPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQM 434 (722)
Q Consensus 355 ~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~~l~~A 434 (722)
...+.|++|.+++++++.. - ...+. .+..+.++|.++..+|++++|+..+.++
T Consensus 305 ~~~~~y~~A~~~~~~al~~----~---~~~~~--------------------~a~a~~~lg~~~~~~g~~~eA~~~~~ka 357 (615)
T TIGR00990 305 KADESYEEAARAFEKALDL----G---KLGEK--------------------EAIALNLRGTFKCLKGKHLEALADLSKS 357 (615)
T ss_pred hhhhhHHHHHHHHHHHHhc----C---CCChh--------------------hHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4456778888888887765 1 11122 3445577899999999999999999999
Q ss_pred HHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhc
Q 004943 435 KNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIG 514 (722)
Q Consensus 435 l~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~ 514 (722)
+++ .|+. ...+..+|.++...|++++|+..|.+++....+. ..++.++|.+|...|+++.+...++.+.
T Consensus 358 l~l---~P~~-----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~kal 426 (615)
T TIGR00990 358 IEL---DPRV-----TQSYIKRASMNLELGDPDKAEEDFDKALKLNSED---PDIYYHRAQLHFIKGEFAQAGKDYQKSI 426 (615)
T ss_pred HHc---CCCc-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 986 3442 3568889999999999999999999998774332 4567889999999999988777666654
Q ss_pred chhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHH
Q 004943 515 PVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREIL 594 (722)
Q Consensus 515 ~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l 594 (722)
.+. ++ -..+++.+|.++..+|++++|...++++++..- ....+++.+|.++...|++++|++.+
T Consensus 427 ~l~--P~-------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P-------~~~~~~~~lg~~~~~~g~~~~A~~~~ 490 (615)
T TIGR00990 427 DLD--PD-------FIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP-------EAPDVYNYYGELLLDQNKFDEAIEKF 490 (615)
T ss_pred HcC--cc-------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-------CChHHHHHHHHHHHHccCHHHHHHHH
Confidence 441 11 234678899999999999999999999998721 12457889999999999999999999
Q ss_pred HHHHHHHHHcCChhHHHHHHHHH-HHHHHHcCCchhHhHHHHHHHHH
Q 004943 595 RSSLTLAKKLYDIPTQIWALSVL-TALYQQLGDRGNEMENDEYRRKK 640 (722)
Q Consensus 595 ~~Al~lAkki~D~~~q~~al~~L-~~l~~~~Gd~~~A~e~~~~~~~~ 640 (722)
+.|+.+..+........+.+... ..++...|++++|.+.++.+...
T Consensus 491 ~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l 537 (615)
T TIGR00990 491 DTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII 537 (615)
T ss_pred HHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 99999987654433323222222 23445578899998888776543
No 14
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.41 E-value=6.8e-11 Score=144.50 Aligned_cols=271 Identities=13% Similarity=0.032 Sum_probs=205.1
Q ss_pred HHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHH
Q 004943 347 DLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVE 426 (722)
Q Consensus 347 ylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~e 426 (722)
...-+......|++++|..++++++.. .++.|.... .+..+.+++.++..+|++++
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~----~~~~g~~~~--------------------~~~~~~~la~~~~~~G~~~~ 549 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQM----ARQHDVYHY--------------------ALWSLLQQSEILFAQGFLQA 549 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH----HhhhcchHH--------------------HHHHHHHHHHHHHHCCCHHH
Confidence 344456677899999999999999998 666664332 34455678999999999999
Q ss_pred HHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcch--hHHHHHHHHHHHHHHhcCChh
Q 004943 427 AQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK--SMQAMCHAYAAVSYFCIGDAE 504 (722)
Q Consensus 427 A~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~--~~~A~allnla~v~l~~G~~e 504 (722)
|.+.+.+++++.++.+.........++..+|.++...|++++|..++.+++...+.. .....+..++|.++...|+++
T Consensus 550 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~ 629 (903)
T PRK04841 550 AYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLD 629 (903)
T ss_pred HHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHH
Confidence 999999999999886532112234567788999999999999999999998876533 245667778899999999998
Q ss_pred HHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhC
Q 004943 505 SSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALAL 584 (722)
Q Consensus 505 ~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~ 584 (722)
.+.+.++....+....+..... ...........+...|+.++|...+.+.... ..+........+..+|.++...
T Consensus 630 ~A~~~l~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~---~~~~~~~~~~~~~~~a~~~~~~ 704 (903)
T PRK04841 630 NARRYLNRLENLLGNGRYHSDW--IANADKVRLIYWQMTGDKEAAANWLRQAPKP---EFANNHFLQGQWRNIARAQILL 704 (903)
T ss_pred HHHHHHHHHHHHHhcccccHhH--hhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC---CCccchhHHHHHHHHHHHHHHc
Confidence 8776666665543322111101 1111111224445689999999998886653 2233344444567899999999
Q ss_pred CChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHHHHHHHhH
Q 004943 585 HDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDELQK 646 (722)
Q Consensus 585 g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~l~~ 646 (722)
|++++|...++++++.++..+++....+++..++.++...|++++|.++++.+........-
T Consensus 705 g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g~ 766 (903)
T PRK04841 705 GQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTGF 766 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccch
Confidence 99999999999999999999999999999999999999999999999999999988866544
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.39 E-value=1.7e-10 Score=126.82 Aligned_cols=239 Identities=15% Similarity=0.051 Sum_probs=158.7
Q ss_pred HHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHH
Q 004943 348 LMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEA 427 (722)
Q Consensus 348 lls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA 427 (722)
++.+......|.+++|..+++++++. ++.. ..++..+|.++..+|++++|
T Consensus 39 y~~g~~~~~~~~~~~A~~~~~~al~~---------~p~~---------------------~~~~~~la~~~~~~g~~~~A 88 (389)
T PRK11788 39 YFKGLNFLLNEQPDKAIDLFIEMLKV---------DPET---------------------VELHLALGNLFRRRGEVDRA 88 (389)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhc---------Cccc---------------------HHHHHHHHHHHHHcCcHHHH
Confidence 33466677889999999999999876 1111 12234568888888899888
Q ss_pred HHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHH
Q 004943 428 QEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSS 507 (722)
Q Consensus 428 ~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~ 507 (722)
.+.++.++. .|+........+++.+|..+...|++++|+..|.+++.... ....+..+++.++...|+++++.
T Consensus 89 ~~~~~~~l~----~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~---~~~~~~~~la~~~~~~g~~~~A~ 161 (389)
T PRK11788 89 IRIHQNLLS----RPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGD---FAEGALQQLLEIYQQEKDWQKAI 161 (389)
T ss_pred HHHHHHHhc----CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCc---chHHHHHHHHHHHHHhchHHHHH
Confidence 888887765 23321122345678888888888888888888887775422 22345667788888888877665
Q ss_pred HHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCCh
Q 004943 508 QAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDT 587 (722)
Q Consensus 508 ~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~ 587 (722)
+.+..+.... .. .. ....+..+..+|.++..+|++++|..+++++++... . ...+...+|.++...|++
T Consensus 162 ~~~~~~~~~~--~~-~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~------~~~~~~~la~~~~~~g~~ 230 (389)
T PRK11788 162 DVAERLEKLG--GD-SL-RVEIAHFYCELAQQALARGDLDAARALLKKALAADP-Q------CVRASILLGDLALAQGDY 230 (389)
T ss_pred HHHHHHHHhc--CC-cc-hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCc-C------CHHHHHHHHHHHHHCCCH
Confidence 5555443321 11 11 112345567788888888888888888888877621 1 124566788888888888
Q ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHH
Q 004943 588 VQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRK 639 (722)
Q Consensus 588 ~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~ 639 (722)
++|.+.++.++.. ++.....+...|+.+|...|+.++|...++....
T Consensus 231 ~~A~~~~~~~~~~-----~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 231 AAAIEALERVEEQ-----DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHHHHH-----ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888887754 2222234456677778888888887776665544
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.37 E-value=3.9e-12 Score=141.32 Aligned_cols=227 Identities=16% Similarity=0.117 Sum_probs=159.6
Q ss_pred HHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHHHH
Q 004943 351 VILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEA 430 (722)
Q Consensus 351 ~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~~ 430 (722)
+...-..|+..+|-.++.+|++. .++ -+..+.|||.+.-.+|+.-+|+++
T Consensus 191 gnLlka~Grl~ea~~cYlkAi~~----------qp~--------------------fAiawsnLg~~f~~~Gei~~aiq~ 240 (966)
T KOG4626|consen 191 GNLLKAEGRLEEAKACYLKAIET----------QPC--------------------FAIAWSNLGCVFNAQGEIWLAIQH 240 (966)
T ss_pred hHHHHhhcccchhHHHHHHHHhh----------CCc--------------------eeeeehhcchHHhhcchHHHHHHH
Confidence 45556668888888888888777 122 344557788888888888888888
Q ss_pred HHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhH----H
Q 004943 431 LVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----S 506 (722)
Q Consensus 431 l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~----a 506 (722)
|++|+.+--.++| +++++|.++..++.|++|+..|..|+.+.. .-|.+..|+|.+|..+|.-|- +
T Consensus 241 y~eAvkldP~f~d--------AYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp---n~A~a~gNla~iYyeqG~ldlAI~~Y 309 (966)
T KOG4626|consen 241 YEEAVKLDPNFLD--------AYINLGNVYKEARIFDRAVSCYLRALNLRP---NHAVAHGNLACIYYEQGLLDLAIDTY 309 (966)
T ss_pred HHHhhcCCCcchH--------HHhhHHHHHHHHhcchHHHHHHHHHHhcCC---cchhhccceEEEEeccccHHHHHHHH
Confidence 8888876443433 377888888888888888888877765433 234455555555555555432 3
Q ss_pred HHHHHH------------------------------hcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004943 507 SQAIDL------------------------------IGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKG 556 (722)
Q Consensus 507 ~~aL~l------------------------------~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qA 556 (722)
++++++ ...+|- .-|.+.+++|.++..+|.+++|-++|..|
T Consensus 310 kral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p---------~hadam~NLgni~~E~~~~e~A~~ly~~a 380 (966)
T KOG4626|consen 310 KRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCP---------NHADAMNNLGNIYREQGKIEEATRLYLKA 380 (966)
T ss_pred HHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCC---------ccHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 333332 222211 13567888888888888888888888888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHH
Q 004943 557 LQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEY 636 (722)
Q Consensus 557 L~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~ 636 (722)
|+.. ..-|.+.++||.+|-.+|+.++|..++++|+.+. +.-+-+++.+|..|...||...|...|+.
T Consensus 381 l~v~-------p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~------P~fAda~~NmGnt~ke~g~v~~A~q~y~r 447 (966)
T KOG4626|consen 381 LEVF-------PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK------PTFADALSNMGNTYKEMGDVSAAIQCYTR 447 (966)
T ss_pred HhhC-------hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC------chHHHHHHhcchHHHHhhhHHHHHHHHHH
Confidence 8873 3345678888888888888888888888888775 33455888889999999988888888887
Q ss_pred HHHH
Q 004943 637 RRKK 640 (722)
Q Consensus 637 ~~~~ 640 (722)
+..+
T Consensus 448 AI~~ 451 (966)
T KOG4626|consen 448 AIQI 451 (966)
T ss_pred HHhc
Confidence 7654
No 17
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.28 E-value=2.8e-09 Score=130.38 Aligned_cols=268 Identities=14% Similarity=0.043 Sum_probs=191.6
Q ss_pred HHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHHHH
Q 004943 351 VILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEA 430 (722)
Q Consensus 351 ~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~~ 430 (722)
+......|+++++...++.+.+. ....+.... ..+ ...+...++.++...|++++|...
T Consensus 416 a~~~~~~g~~~~a~~~l~~a~~~----~~~~~~~~~---------~~~--------~~~~~~~~a~~~~~~g~~~~A~~~ 474 (903)
T PRK04841 416 AWLAQSQHRYSEVNTLLARAEQE----LKDRNIELD---------GTL--------QAEFNALRAQVAINDGDPEEAERL 474 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh----ccccCcccc---------hhH--------HHHHHHHHHHHHHhCCCHHHHHHH
Confidence 33445678999999999888776 322211000 001 112222368889999999999999
Q ss_pred HHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchh---HHHHHHHHHHHHHHhcCChhHHH
Q 004943 431 LVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS---MQAMCHAYAAVSYFCIGDAESSS 507 (722)
Q Consensus 431 l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~---~~A~allnla~v~l~~G~~e~a~ 507 (722)
++++++.... ++. .......+.+|.++...|++++|...|.+++...++.+ ....++.++|.++...|+++.+.
T Consensus 475 ~~~al~~~~~-~~~--~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~ 551 (903)
T PRK04841 475 AELALAELPL-TWY--YSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAY 551 (903)
T ss_pred HHHHHhcCCC-ccH--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 9999985322 121 23456778899999999999999999999998766543 56778899999999999988755
Q ss_pred HHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCCh
Q 004943 508 QAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDT 587 (722)
Q Consensus 508 ~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~ 587 (722)
..++....+.+..+.. .....+..+..+|.++..+|++++|..++++++.+.. ..++ ...+.++..+|.++...|++
T Consensus 552 ~~~~~al~~~~~~~~~-~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~-~~~~-~~~~~~~~~la~~~~~~G~~ 628 (903)
T PRK04841 552 ETQEKAFQLIEEQHLE-QLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLS-NYQP-QQQLQCLAMLAKISLARGDL 628 (903)
T ss_pred HHHHHHHHHHHHhccc-cccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh-ccCc-hHHHHHHHHHHHHHHHcCCH
Confidence 5555444443332211 1111345567789999999999999999999999976 4554 45667888999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCChhHH---------------------------------------HHHHHHHHHHHHHcCCch
Q 004943 588 VQAREILRSSLTLAKKLYDIPTQ---------------------------------------IWALSVLTALYQQLGDRG 628 (722)
Q Consensus 588 ~qA~~~l~~Al~lAkki~D~~~q---------------------------------------~~al~~L~~l~~~~Gd~~ 628 (722)
++|...+.++..++...++.... ......+++++...|+++
T Consensus 629 ~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~ 708 (903)
T PRK04841 629 DNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFD 708 (903)
T ss_pred HHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHH
Confidence 99999999998886655421100 001346788899999999
Q ss_pred hHhHHHHHHHHHHHHHh
Q 004943 629 NEMENDEYRRKKLDELQ 645 (722)
Q Consensus 629 ~A~e~~~~~~~~~~~l~ 645 (722)
+|...++......+...
T Consensus 709 ~A~~~l~~al~~~~~~g 725 (903)
T PRK04841 709 EAEIILEELNENARSLR 725 (903)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 99998888877655533
No 18
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.25 E-value=8.8e-08 Score=117.46 Aligned_cols=28 Identities=7% Similarity=0.077 Sum_probs=21.3
Q ss_pred HHhhHHHhHhhhcCChHHHHHHHHhHHH
Q 004943 131 NFNSQLANAFIIEGDYQSSISALQSGYV 158 (722)
Q Consensus 131 ~f~f~la~~~~~~~d~~~A~~~L~~g~~ 158 (722)
.+++++..++...||+..|+..+.+...
T Consensus 183 vL~L~~~rlY~~l~dw~~Ai~lL~~L~k 210 (987)
T PRK09782 183 TLRTDLLQRAIYLKQWSQADTLYNEARQ 210 (987)
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHh
Confidence 4566667788888999989888887543
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.24 E-value=3e-09 Score=117.05 Aligned_cols=239 Identities=15% Similarity=0.017 Sum_probs=179.3
Q ss_pred HHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHH
Q 004943 346 VDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFV 425 (722)
Q Consensus 346 vylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~ 425 (722)
+++.-+.++...|++++|..++++++.. ++... .. ....+.++|.++...|+++
T Consensus 71 ~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~~~~~----------~~--------~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 71 LHLALGNLFRRRGEVDRAIRIHQNLLSR--------PDLTR----------EQ--------RLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHhcC--------CCCCH----------HH--------HHHHHHHHHHHHHHCCCHH
Confidence 3455577778899999999988876543 11110 00 2234567899999999999
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchh--HHHHHHHHHHHHHHhcCCh
Q 004943 426 EAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS--MQAMCHAYAAVSYFCIGDA 503 (722)
Q Consensus 426 eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~--~~A~allnla~v~l~~G~~ 503 (722)
+|.+.+.++++. .|. ...++..++.++...|++++|...|...++...... ..+..+.++|.++...|++
T Consensus 125 ~A~~~~~~~l~~---~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 196 (389)
T PRK11788 125 RAEELFLQLVDE---GDF-----AEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDL 196 (389)
T ss_pred HHHHHHHHHHcC---Ccc-----hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCH
Confidence 999999999874 232 234577888999999999999999998877544332 3455567889999999999
Q ss_pred hHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Q 004943 504 ESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALA 583 (722)
Q Consensus 504 e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a 583 (722)
+.+...++.+..... + -..+++.+|.++...|++++|...++++++.. +.....+++.|+.+|..
T Consensus 197 ~~A~~~~~~al~~~p--~-------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~~l~~~~~~ 261 (389)
T PRK11788 197 DAARALLKKALAADP--Q-------CVRASILLGDLALAQGDYAAAIEALERVEEQD------PEYLSEVLPKLMECYQA 261 (389)
T ss_pred HHHHHHHHHHHhHCc--C-------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC------hhhHHHHHHHHHHHHHH
Confidence 887776666544311 1 12467789999999999999999999998762 22334567889999999
Q ss_pred CCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHHH
Q 004943 584 LHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 640 (722)
Q Consensus 584 ~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~ 640 (722)
.|+.++|...++.+... .++. . ....++.++...|++++|...++...+.
T Consensus 262 ~g~~~~A~~~l~~~~~~---~p~~--~--~~~~la~~~~~~g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 262 LGDEAEGLEFLRRALEE---YPGA--D--LLLALAQLLEEQEGPEAAQALLREQLRR 311 (389)
T ss_pred cCCHHHHHHHHHHHHHh---CCCc--h--HHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 99999999999998776 2343 2 2378899999999999999988877655
No 20
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.22 E-value=2.1e-09 Score=107.01 Aligned_cols=201 Identities=16% Similarity=0.085 Sum_probs=154.7
Q ss_pred HHHHHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHH
Q 004943 407 LMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQ 486 (722)
Q Consensus 407 ~a~lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~ 486 (722)
.+..+.++|.++...|++++|.+.+.++++. .|+. ...++.+|.++...|++++|...|++++......
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~---~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~--- 98 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEH---DPDD-----YLAYLALALYYQQLGELEKAEDSFRRALTLNPNN--- 98 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---Cccc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---
Confidence 3445567899999999999999999999875 3442 3568889999999999999999999999875443
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 004943 487 AMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGN 566 (722)
Q Consensus 487 A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd 566 (722)
..+..++|.++...|+++.+...+..+...... . .....+..+|.++...|++.+|...+.++++... .+
T Consensus 99 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~----~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~ 168 (234)
T TIGR02521 99 GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLY----P---QPARSLENAGLCALKAGDFDKAEKYLTRALQIDP---QR 168 (234)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc----c---cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---CC
Confidence 246788899999999988766666554332110 0 1335677889999999999999999999998732 12
Q ss_pred hHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHH
Q 004943 567 LQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRR 638 (722)
Q Consensus 567 ~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~ 638 (722)
..++..+|.++...|++++|...++.++.+ .++.+. ....++.++...|+.++|....+...
T Consensus 169 ----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 169 ----PESLLELAELYYLRGQYKDARAYLERYQQT---YNQTAE---SLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred ----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHH---HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 346778999999999999999999999987 233322 33467888999999999887655443
No 21
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.21 E-value=2.1e-09 Score=113.92 Aligned_cols=284 Identities=11% Similarity=0.061 Sum_probs=197.5
Q ss_pred HHHhhccCCChHHHHHHHHHHHHHHHHHHHhc---CCCCCcccchhhhhHHHHHHHHHHH---------------HHHHH
Q 004943 350 VVILGRPKGLFKECMQRIQSGMQTIQDALLKL---GITDGVREVDLQHSAIWMAGVYLML---------------LMQFL 411 (722)
Q Consensus 350 s~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~l---g~~~g~~e~~l~~~~~w~~~~y~~l---------------~a~lL 411 (722)
++.-....+++.++..-|.+.|...++.+.++ |-.+ ......-|..+...+- +....
T Consensus 12 ~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~-----~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~ 86 (518)
T KOG1941|consen 12 KGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLV-----TAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAY 86 (518)
T ss_pred HHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccch-----hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677788888888888888877654443 3221 1111223322221110 11112
Q ss_pred HhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhh-hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcch---hHHH
Q 004943 412 ENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQ-ACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK---SMQA 487 (722)
Q Consensus 412 e~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~-~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~---~~~A 487 (722)
.|++..+..-.++.+++..-+ ++-.+|..-. ..-...+-.+|..+.+++-++.+++.|+.|++.+... ..+-
T Consensus 87 lnlar~~e~l~~f~kt~~y~k----~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LEl 162 (518)
T KOG1941|consen 87 LNLARSNEKLCEFHKTISYCK----TCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLEL 162 (518)
T ss_pred HHHHHHHHHHHHhhhHHHHHH----HHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeee
Confidence 233333333333333333222 2222343111 1223667779999999999999999999999977544 4666
Q ss_pred HHHHHHHHHHHhcCChhH----HHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 004943 488 MCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNH 563 (722)
Q Consensus 488 ~allnla~v~l~~G~~e~----a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~ 563 (722)
.+.+.+|..+-...|++. ...|+++++.+-- ++ ....-++.+++.++..+..+|+...|+++..+|.+++- +
T Consensus 163 qvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l--~d-~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal-~ 238 (518)
T KOG1941|consen 163 QVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGL--KD-WSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLAL-Q 238 (518)
T ss_pred ehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCc--Cc-hhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH-H
Confidence 677888999988889876 6889999887621 11 11222678999999999999999999999999999988 7
Q ss_pred cCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCc-----hhHhHHHHHHH
Q 004943 564 MGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDR-----GNEMENDEYRR 638 (722)
Q Consensus 564 ~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~-----~~A~e~~~~~~ 638 (722)
.||+-+.+..+..+|++|...||.+.|-.-+++|+.....+||+.+|+.++...++......-. -+|.+.-+...
T Consensus 239 ~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~l 318 (518)
T KOG1941|consen 239 HGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLL 318 (518)
T ss_pred hCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999888866544433 33666666666
Q ss_pred HHHHHHhH
Q 004943 639 KKLDELQK 646 (722)
Q Consensus 639 ~~~~~l~~ 646 (722)
.++.+++.
T Consensus 319 evA~~IG~ 326 (518)
T KOG1941|consen 319 EVASSIGA 326 (518)
T ss_pred HHHHHhhh
Confidence 66655443
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.12 E-value=1.4e-08 Score=120.41 Aligned_cols=257 Identities=12% Similarity=-0.009 Sum_probs=164.5
Q ss_pred HHHHHHhhccCCChHHHHHHHHHHHHHHH----------HHHHhcCCCCCcccchhhhhHHHH-HHHHHHHHHHHHHhhH
Q 004943 347 DLMVVILGRPKGLFKECMQRIQSGMQTIQ----------DALLKLGITDGVREVDLQHSAIWM-AGVYLMLLMQFLENKV 415 (722)
Q Consensus 347 ylls~~~~~~kg~~~kA~k~~~~AL~~i~----------~~~~~lg~~~g~~e~~l~~~~~w~-~~~y~~l~a~lLe~Lg 415 (722)
++.-+..+...|++++|...+++++++-- ......|+... +.-.-+ .|. ...- ....+.++
T Consensus 113 ~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~e---A~~~~~-~~~~~~P~---~~~a~~~~- 184 (656)
T PRK15174 113 VLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQ---AISLAR-TQAQEVPP---RGDMIATC- 184 (656)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHH---HHHHHH-HHHHhCCC---CHHHHHHH-
Confidence 34446777888999999999999988600 00111222111 000000 000 0000 00011122
Q ss_pred HHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 004943 416 AVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAV 495 (722)
Q Consensus 416 ~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~ 495 (722)
..+...|++++|++.+.++++... ++. .....+.|..+...|++++|+..|++++....+ ...+..++|.
T Consensus 185 ~~l~~~g~~~eA~~~~~~~l~~~~--~~~-----~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~---~~~~~~~Lg~ 254 (656)
T PRK15174 185 LSFLNKSRLPEDHDLARALLPFFA--LER-----QESAGLAVDTLCAVGKYQEAIQTGESALARGLD---GAALRRSLGL 254 (656)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCC--Ccc-----hhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---CHHHHHHHHH
Confidence 236677888888777776655321 111 112355677888999999999999988876433 3566788999
Q ss_pred HHHhcCChhH-HHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 004943 496 SYFCIGDAES-SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYL 574 (722)
Q Consensus 496 v~l~~G~~e~-a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L 574 (722)
+|...|++++ ..+|+..++......++ -+.++..+|.++..+|++++|..++++++++.- + ...+.
T Consensus 255 ~l~~~G~~~eA~~~A~~~~~~Al~l~P~------~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P----~---~~~a~ 321 (656)
T PRK15174 255 AYYQSGRSREAKLQAAEHWRHALQFNSD------NVRIVTLYADALIRTGQNEKAIPLLQQSLATHP----D---LPYVR 321 (656)
T ss_pred HHHHcCCchhhHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC----C---CHHHH
Confidence 9999999874 22333333333222211 235788899999999999999999999998721 1 23467
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHHH
Q 004943 575 TILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 640 (722)
Q Consensus 575 ~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~ 640 (722)
..||.++...|++++|.+.++.++.. .++. ......++.++...|++++|.+.|+.+.+.
T Consensus 322 ~~La~~l~~~G~~~eA~~~l~~al~~---~P~~---~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 322 AMYARALRQVGQYTAASDEFVQLARE---KGVT---SKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh---Cccc---hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 78999999999999999999888774 2332 223445678889999999999999887655
No 23
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.09 E-value=1.5e-08 Score=100.77 Aligned_cols=200 Identities=12% Similarity=0.052 Sum_probs=151.2
Q ss_pred HHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCC
Q 004943 344 ALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSG 423 (722)
Q Consensus 344 aLvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~ 423 (722)
+-.++.-+..+...|++++|.+.++++++. + +. ....+..+|.++...|+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~---------~-p~--------------------~~~~~~~la~~~~~~~~ 80 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEH---------D-PD--------------------DYLAYLALALYYQQLGE 80 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------C-cc--------------------cHHHHHHHHHHHHHcCC
Confidence 445555677778899999999999999766 1 21 12233457999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCCh
Q 004943 424 FVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDA 503 (722)
Q Consensus 424 ~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~ 503 (722)
+++|.+.+.++++.. |+. +.+.+.+|.++...|++++|...|.+++.... .........++|.++...|++
T Consensus 81 ~~~A~~~~~~al~~~---~~~-----~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~ 151 (234)
T TIGR02521 81 LEKAEDSFRRALTLN---PNN-----GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL-YPQPARSLENAGLCALKAGDF 151 (234)
T ss_pred HHHHHHHHHHHHhhC---CCC-----HHHHHHHHHHHHHcccHHHHHHHHHHHHhccc-cccchHHHHHHHHHHHHcCCH
Confidence 999999999999863 321 24678899999999999999999999886432 223345567789999999999
Q ss_pred hHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Q 004943 504 ESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALA 583 (722)
Q Consensus 504 e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a 583 (722)
+.+.+.++.+..... . ...+++.+|.++...|++++|..++++++++ . - + ....+..++.++..
T Consensus 152 ~~A~~~~~~~~~~~~-----~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~--~-~---~~~~~~~~~~~~~~ 215 (234)
T TIGR02521 152 DKAEKYLTRALQIDP-----Q----RPESLLELAELYYLRGQYKDARAYLERYQQT-Y--N-Q---TAESLWLGIRIARA 215 (234)
T ss_pred HHHHHHHHHHHHhCc-----C----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C--C-C---CHHHHHHHHHHHHH
Confidence 887777665544311 1 1246778999999999999999999999987 2 1 1 23455678899999
Q ss_pred CCChHHHHHHHHHHH
Q 004943 584 LHDTVQAREILRSSL 598 (722)
Q Consensus 584 ~g~~~qA~~~l~~Al 598 (722)
.|+.++|....+...
T Consensus 216 ~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 216 LGDVAAAQRYGAQLQ 230 (234)
T ss_pred HhhHHHHHHHHHHHH
Confidence 999999988766554
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.09 E-value=1.2e-08 Score=121.08 Aligned_cols=228 Identities=13% Similarity=0.034 Sum_probs=150.1
Q ss_pred HhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHHHHH
Q 004943 352 ILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEAL 431 (722)
Q Consensus 352 ~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~~l 431 (722)
+.....|++++|...++++++. + |+ ....+..+|.++..+|++++|++.+
T Consensus 84 ~~~l~~g~~~~A~~~l~~~l~~---------~-P~--------------------~~~a~~~la~~l~~~g~~~~Ai~~l 133 (656)
T PRK15174 84 ISPLASSQPDAVLQVVNKLLAV---------N-VC--------------------QPEDVLLVASVLLKSKQYATVADLA 133 (656)
T ss_pred hhHhhcCCHHHHHHHHHHHHHh---------C-CC--------------------ChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4445799999999999999887 1 21 1112244677778888888888888
Q ss_pred HHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHH-----------------------
Q 004943 432 VQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAM----------------------- 488 (722)
Q Consensus 432 ~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~----------------------- 488 (722)
.+++++ .|+. ..++..+|..+..+|++++|...|+..+....+... +.
T Consensus 134 ~~Al~l---~P~~-----~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~~~~~l~~~g~~~eA~~~~~~~l 204 (656)
T PRK15174 134 EQAWLA---FSGN-----SQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MIATCLSFLNKSRLPEDHDLARALL 204 (656)
T ss_pred HHHHHh---CCCc-----HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888775 3332 234556666677777777777777655443322211 11
Q ss_pred ---------HHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHH----HHHHHHH
Q 004943 489 ---------CHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQE----ARNRLAK 555 (722)
Q Consensus 489 ---------allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~e----Ak~~L~q 555 (722)
....++.++...|+++++.+.+..+... .. . -..+++.+|.++...|++.+ |...+++
T Consensus 205 ~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~---~p--~----~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~ 275 (656)
T PRK15174 205 PFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR---GL--D----GAALRRSLGLAYYQSGRSREAKLQAAEHWRH 275 (656)
T ss_pred hcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CC--C----CHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 0122233444445544433333332221 00 0 23567788999999999986 7888888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHH
Q 004943 556 GLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDE 635 (722)
Q Consensus 556 AL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~ 635 (722)
++++. .....++..+|.++...|++++|...++.++.+. ++. ..+...|+.+|...|++++|.+.++
T Consensus 276 Al~l~-------P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~---P~~---~~a~~~La~~l~~~G~~~eA~~~l~ 342 (656)
T PRK15174 276 ALQFN-------SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH---PDL---PYVRAMYARALRQVGQYTAASDEFV 342 (656)
T ss_pred HHhhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCC---HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 88772 1234688899999999999999999999999763 332 3456778999999999999999887
Q ss_pred HHHHH
Q 004943 636 YRRKK 640 (722)
Q Consensus 636 ~~~~~ 640 (722)
.....
T Consensus 343 ~al~~ 347 (656)
T PRK15174 343 QLARE 347 (656)
T ss_pred HHHHh
Confidence 66543
No 25
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.06 E-value=1.9e-08 Score=106.81 Aligned_cols=221 Identities=16% Similarity=0.104 Sum_probs=185.1
Q ss_pred hHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchh-------HH
Q 004943 414 KVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS-------MQ 486 (722)
Q Consensus 414 Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~-------~~ 486 (722)
++.+++..|-|..+++.|+.|+.+....+|. ..+..+...+|...-.+.+++.|+..-..|..+.++.+ -+
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~--~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDA--MLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCc--eeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 7999999999999999999999999999996 34678899999999999999999999999998887664 45
Q ss_pred HHHHHHHHHHHHhcCChhH----HHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 004943 487 AMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHN 562 (722)
Q Consensus 487 A~allnla~v~l~~G~~e~----a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~ 562 (722)
+.++..++..+..+|+... +.++..+... +++ .--.|-.+..+|.+|...|+.+.|.+.|++|..+.+
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~----~Gd---ra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~- 277 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQ----HGD---RALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMA- 277 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH----hCC---hHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHh-
Confidence 6778888888888787544 5555544433 333 223778999999999999999999999999999976
Q ss_pred hcCChHHHHHHHHHHHHHHHhCCCh-----HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHH
Q 004943 563 HMGNLQLVSQYLTILGNLALALHDT-----VQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYR 637 (722)
Q Consensus 563 ~~gd~~l~a~~L~~LG~~~~a~g~~-----~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~ 637 (722)
.+||+.++..++..++.-.-...-. =+|.+.-+..+++|..||......-.+..|+.+|++.|+-++=.+++..+
T Consensus 278 ~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra 357 (518)
T KOG1941|consen 278 SLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRA 357 (518)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 7999999999998888755443322 34999999999999999999999999999999999999988888888877
Q ss_pred HHHHHHH
Q 004943 638 RKKLDEL 644 (722)
Q Consensus 638 ~~~~~~l 644 (722)
.+.-+++
T Consensus 358 ~~~~~e~ 364 (518)
T KOG1941|consen 358 HECVEET 364 (518)
T ss_pred HHHHHHH
Confidence 7666653
No 26
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.03 E-value=1.1e-06 Score=106.28 Aligned_cols=394 Identities=12% Similarity=0.012 Sum_probs=230.6
Q ss_pred HHHHHHhHHHHHhhccHhHHhHHHHHHhccCCCCChHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhh
Q 004943 5 AEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFEL 84 (722)
Q Consensus 5 ~~~L~~lAe~~~~~~~i~~ai~CLeA~l~~~~~l~p~~EA~~rLrla~iL~e~T~N~~~A~thLeka~~l~~~~~~~~dl 84 (722)
+.++..+|..++..++...|+.+++.+++..| ...++ ++-+|.+++ .+.+.++|..+|++++.. -|...+
T Consensus 49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P---~~~~a--~~~la~~l~-~~g~~~eA~~~l~~~l~~---~P~~~~- 118 (765)
T PRK10049 49 ARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP---QNDDY--QRGLILTLA-DAGQYDEALVKAKQLVSG---APDKAN- 118 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHH--HHHHHHHHH-HCCCHHHHHHHHHHHHHh---CCCCHH-
Confidence 45688889999999999999999999997654 33444 346666654 789999999999998542 222222
Q ss_pred hhhhhHHHHHHHHHcCCCchHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHhHhhhcCChHHHHHHHHhHHHHHhhcC
Q 004943 85 KCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEIS 164 (722)
Q Consensus 85 k~~~~~lLa~~y~~~~~~~~~k~~l~k~i~~~~~~~~~~~~~~W~~~f~f~la~~~~~~~d~~~A~~~L~~g~~~A~~~~ 164 (722)
+..|+.+|...|....+-.++.++++..-. +. ...+.++.++...++...|++.++.....-..
T Consensus 119 ----~~~la~~l~~~g~~~~Al~~l~~al~~~P~------~~----~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~-- 182 (765)
T PRK10049 119 ----LLALAYVYKRAGRHWDELRAMTQALPRAPQ------TQ----QYPTEYVQALRNNRLSAPALGAIDDANLTPAE-- 182 (765)
T ss_pred ----HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CH----HHHHHHHHHHHHCCChHHHHHHHHhCCCCHHH--
Confidence 567899999999887666677777765322 11 12223566776778888898888754321000
Q ss_pred ChhHHHHHHHHHHHHHhccc-C---ChhHHHHHHHhhhHHhhhcCccccccccchhhhhhHHHHHHHhhhhhhhhhhhhh
Q 004943 165 YPDLQMFFATAILHVHLMQW-D---DENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIFYRLRICDYKNAAHHV 240 (722)
Q Consensus 165 ~~~~~v~f~l~~~~~~L~~~-~---~~~~v~~~l~~~~~~~~~i~~~~~~~~~g~~~~~e~l~i~~~l~ic~~~~~~~~v 240 (722)
...+............+... . .....++++.....++...+.+.... . ...+.. +
T Consensus 183 ~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~-~------~~~~a~--------------~ 241 (765)
T PRK10049 183 KRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDAT-A------DYQRAR--------------I 241 (765)
T ss_pred HHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccc-h------HHHHHH--------------H
Confidence 00111111111111111110 1 11122444444444433211110000 0 000000 0
Q ss_pred hhHHHHHHHhHHHHHHHHHHhhhhHHhhhhcCCCCCChhhhHHHHHHHHHHHHHHHhcccCcCcccccCCccccCCCccc
Q 004943 241 DNLDAAMKADKQKMQEIQQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNARQA 320 (722)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~lq~~l~~~~~~~~~~~~~l~~~~~~~~~~~ 320 (722)
.++ ...+ ...+ .++.. ...++.++. . |
T Consensus 242 d~l-----------------~~Ll-------~~g~-----~~eA~---~~~~~ll~~------~---~------------ 268 (765)
T PRK10049 242 DRL-----------------GALL-------ARDR-----YKDVI---SEYQRLKAE------G---Q------------ 268 (765)
T ss_pred HHH-----------------HHHH-------Hhhh-----HHHHH---HHHHHhhcc------C---C------------
Confidence 000 0000 0000 00000 111111111 0 0
Q ss_pred cCcccccCCCCCcccccCcchhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHH
Q 004943 321 WGDKLVLAPSPMDGEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMA 400 (722)
Q Consensus 321 ~~d~~~~~~~~~~~~WLpk~~l~aLvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~ 400 (722)
+ .| -++..++ +..+...|++++|+++++++++. .......
T Consensus 269 ---------~------~P---~~a~~~l--a~~yl~~g~~e~A~~~l~~~l~~------~p~~~~~-------------- 308 (765)
T PRK10049 269 ---------I------IP---PWAQRWV--ASAYLKLHQPEKAQSILTELFYH------PETIADL-------------- 308 (765)
T ss_pred ---------C------CC---HHHHHHH--HHHHHhcCCcHHHHHHHHHHhhc------CCCCCCC--------------
Confidence 0 00 0233332 55777889999999999987654 1111000
Q ss_pred HHHHHHHHHHHHhhHHHHHhhCCHHHHHHHHHHHHHHHH----------hCCchhhhhHHHHHHHHHHHHHHhCCHHHHH
Q 004943 401 GVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNWFI----------RFPTILQACESMIEMLRGQYAHSVGCYSEAA 470 (722)
Q Consensus 401 ~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~----------~~~d~~~~~~a~i~~llG~~~~alG~~~~Al 470 (722)
.......++.++..+|++++|++.+.++.+..- ..|+- ....+..+.|.++...|++++|+
T Consensus 309 ------~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~---~~~~a~~~~a~~l~~~g~~~eA~ 379 (765)
T PRK10049 309 ------SDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPND---DWLQGQSLLSQVAKYSNDLPQAE 379 (765)
T ss_pred ------ChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCc---hHHHHHHHHHHHHHHcCCHHHHH
Confidence 011123457778999999999999998887531 11221 12356788999999999999999
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHH
Q 004943 471 FHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEAR 550 (722)
Q Consensus 471 ~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk 550 (722)
..|++++....+. ..++.++|.++...|+++.+.+.++.+..+. ++ -...++..|.++...|++.+|.
T Consensus 380 ~~l~~al~~~P~n---~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~--Pd-------~~~l~~~~a~~al~~~~~~~A~ 447 (765)
T PRK10049 380 MRARELAYNAPGN---QGLRIDYASVLQARGWPRAAENELKKAEVLE--PR-------NINLEVEQAWTALDLQEWRQMD 447 (765)
T ss_pred HHHHHHHHhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CC-------ChHHHHHHHHHHHHhCCHHHHH
Confidence 9999988776544 3477889999999999998888888776651 21 1236777888899999999999
Q ss_pred HHHHHHHHH
Q 004943 551 NRLAKGLQI 559 (722)
Q Consensus 551 ~~L~qAL~l 559 (722)
..++++++.
T Consensus 448 ~~~~~ll~~ 456 (765)
T PRK10049 448 VLTDDVVAR 456 (765)
T ss_pred HHHHHHHHh
Confidence 999999987
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.98 E-value=4e-06 Score=98.71 Aligned_cols=248 Identities=13% Similarity=0.038 Sum_probs=170.2
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHHHHHHHHHH
Q 004943 357 KGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKN 436 (722)
Q Consensus 357 kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~~l~~Al~ 436 (722)
.++.-.+..++..|+.. +..-+... ..-+|+|+|..+...|++.+|..++.+|+.
T Consensus 426 ~~d~~~sL~~~~~A~d~----L~~~~~~i---------------------p~E~LNNvaslhf~~g~~~~A~~~f~~A~~ 480 (1018)
T KOG2002|consen 426 QTDPWASLDAYGNALDI----LESKGKQI---------------------PPEVLNNVASLHFRLGNIEKALEHFKSALG 480 (1018)
T ss_pred hcChHHHHHHHHHHHHH----HHHcCCCC---------------------CHHHHHhHHHHHHHhcChHHHHHHHHHHhh
Confidence 34555558889999988 55555433 245579999999999999999999999999
Q ss_pred HHHh--CCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhH----HHHHH
Q 004943 437 WFIR--FPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAI 510 (722)
Q Consensus 437 l~~~--~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~----a~~aL 510 (722)
.+.+ .+|.-....-.+.|+++.+...+++++.|...|.+.++...+ -..|.+.+|-.-...+...+ ...++
T Consensus 481 ~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~---YId~ylRl~~ma~~k~~~~ea~~~lk~~l 557 (1018)
T KOG2002|consen 481 KLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG---YIDAYLRLGCMARDKNNLYEASLLLKDAL 557 (1018)
T ss_pred hhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch---hHHHHHHhhHHHHhccCcHHHHHHHHHHH
Confidence 9774 344311122357999999999999999999999876654332 22333333211111111111 11111
Q ss_pred ----------HHhcc-----------------hhcccccccChHHHHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHH
Q 004943 511 ----------DLIGP-----------------VYQMKDTINGVREEASLHFAYGLLLMR-----QQDFQEARNRLAKGLQ 558 (722)
Q Consensus 511 ----------~l~~~-----------------l~r~~~~~~~~~~~A~al~~lG~~~~~-----~G~~~eAk~~L~qAL~ 558 (722)
.+++. ++...+.. .-++++..||.+++. ..+...++.++.+|++
T Consensus 558 ~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~----~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq 633 (1018)
T KOG2002|consen 558 NIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTK----TDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQ 633 (1018)
T ss_pred hcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccC----CchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHH
Confidence 11110 00101000 125788888887763 2334668888899998
Q ss_pred HHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHH
Q 004943 559 IAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRR 638 (722)
Q Consensus 559 la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~ 638 (722)
+..+-+-+..--..+-+++|-++...|++.+|++.+.+-.+-..+..| +..+|+.+|..+|.+..|.+.|+...
T Consensus 634 ~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~d------v~lNlah~~~e~~qy~~AIqmYe~~l 707 (1018)
T KOG2002|consen 634 LYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFED------VWLNLAHCYVEQGQYRLAIQMYENCL 707 (1018)
T ss_pred HHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCc------eeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 866545444444567889999999999999999999999988887888 45688999999999999999999999
Q ss_pred HHHH
Q 004943 639 KKLD 642 (722)
Q Consensus 639 ~~~~ 642 (722)
+++.
T Consensus 708 kkf~ 711 (1018)
T KOG2002|consen 708 KKFY 711 (1018)
T ss_pred HHhc
Confidence 9887
No 28
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.96 E-value=3e-08 Score=121.48 Aligned_cols=194 Identities=12% Similarity=-0.034 Sum_probs=117.3
Q ss_pred HhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHH
Q 004943 412 ENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHA 491 (722)
Q Consensus 412 e~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~all 491 (722)
.++|.++...|++++|.+.+.+++++. |+. ......++......|++++|+.+|++++....+ +.+..
T Consensus 546 ~~la~all~~Gd~~eA~~~l~qAL~l~---P~~-----~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~----~~a~~ 613 (987)
T PRK09782 546 LAAANTAQAAGNGAARDRWLQQAEQRG---LGD-----NALYWWLHAQRYIPGQPELALNDLTRSLNIAPS----ANAYV 613 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC---Ccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC----HHHHH
Confidence 345666677777777777777776542 332 112223333334457777777777777765543 33556
Q ss_pred HHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHH
Q 004943 492 YAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVS 571 (722)
Q Consensus 492 nla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a 571 (722)
++|.++...|+++++..+++.+... .++ .+.+++++|.++...|++++|...|++|+++ . ...+
T Consensus 614 ~LA~~l~~lG~~deA~~~l~~AL~l--~Pd-------~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l-~------P~~~ 677 (987)
T PRK09782 614 ARATIYRQRHNVPAAVSDLRAALEL--EPN-------NSNYQAALGYALWDSGDIAQSREMLERAHKG-L------PDDP 677 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCC-------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-C------CCCH
Confidence 7777777777777766666655443 111 2346777777777778888888887777776 1 1123
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHH
Q 004943 572 QYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRK 639 (722)
Q Consensus 572 ~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~ 639 (722)
.++..||.++...|++++|+..++.|+.+.-...+ +....+.+.....+..++.+.+.+..+
T Consensus 678 ~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~------i~~~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 678 ALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQAL------ITPLTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCch------hhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 56777778888888888888877777776643333 222334444444444555544444433
No 29
>PRK12370 invasion protein regulator; Provisional
Probab=98.93 E-value=1.6e-07 Score=109.41 Aligned_cols=175 Identities=14% Similarity=0.042 Sum_probs=128.7
Q ss_pred hhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHh
Q 004943 420 TRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFC 499 (722)
Q Consensus 420 ~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~ 499 (722)
..+++++|.+.+++++++ .|+. +.++..+|.++...|++++|+..|++|+++..+. +.++.++|.++..
T Consensus 316 ~~~~~~~A~~~~~~Al~l---dP~~-----~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~---~~a~~~lg~~l~~ 384 (553)
T PRK12370 316 KQNAMIKAKEHAIKATEL---DHNN-----PQALGLLGLINTIHSEYIVGSLLFKQANLLSPIS---ADIKYYYGWNLFM 384 (553)
T ss_pred cchHHHHHHHHHHHHHhc---CCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHH
Confidence 345689999999999886 3443 3568889999999999999999999999876543 3456888999999
Q ss_pred cCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004943 500 IGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGN 579 (722)
Q Consensus 500 ~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~ 579 (722)
.|+++++...++.+..+ .+. + . . +.+.++.++...|++++|...++++++... .....++..+|.
T Consensus 385 ~G~~~eAi~~~~~Al~l--~P~-~--~--~--~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~------p~~~~~~~~la~ 449 (553)
T PRK12370 385 AGQLEEALQTINECLKL--DPT-R--A--A--AGITKLWITYYHTGIDDAIRLGDELRSQHL------QDNPILLSMQVM 449 (553)
T ss_pred CCCHHHHHHHHHHHHhc--CCC-C--h--h--hHHHHHHHHHhccCHHHHHHHHHHHHHhcc------ccCHHHHHHHHH
Confidence 99999877777766554 111 1 1 2 233345556778999999999999876621 122346788999
Q ss_pred HHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCC
Q 004943 580 LALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGD 626 (722)
Q Consensus 580 ~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd 626 (722)
++...|+.++|+..++.... +.+....+...|+..|...|+
T Consensus 450 ~l~~~G~~~eA~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~ 490 (553)
T PRK12370 450 FLSLKGKHELARKLTKEIST------QEITGLIAVNLLYAEYCQNSE 490 (553)
T ss_pred HHHhCCCHHHHHHHHHHhhh------ccchhHHHHHHHHHHHhccHH
Confidence 99999999999998766422 222335567788888888884
No 30
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.89 E-value=7.3e-07 Score=96.97 Aligned_cols=286 Identities=11% Similarity=-0.018 Sum_probs=175.5
Q ss_pred HHHHhhccCCChHHHHHHHHHHHHHHHHH---------HHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHH
Q 004943 349 MVVILGRPKGLFKECMQRIQSGMQTIQDA---------LLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVEL 419 (722)
Q Consensus 349 ls~~~~~~kg~~~kA~k~~~~AL~~i~~~---------~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l 419 (722)
+-++....+|++++|.++++++++.--+. ....|+..+........-..+..... .....+..+|.++.
T Consensus 48 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~a~~~~ 125 (355)
T cd05804 48 VEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENP--DYWYLLGMLAFGLE 125 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCC--CcHHHHHHHHHHHH
Confidence 45667778999999999999988751100 01112111100000000000000000 01234457788889
Q ss_pred hhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcch-hHHHHHHHHHHHHHH
Q 004943 420 TRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK-SMQAMCHAYAAVSYF 498 (722)
Q Consensus 420 ~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~-~~~A~allnla~v~l 498 (722)
.+|++++|.+.+++++++. |+. +.++..+|.++...|++++|..+|++++...... .....+..++|.+++
T Consensus 126 ~~G~~~~A~~~~~~al~~~---p~~-----~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 126 EAGQYDRAEEAARRALELN---PDD-----AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HcCCHHHHHHHHHHHHhhC---CCC-----cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 9999999999998888853 332 3567888999899999999999998888765432 344556677888899
Q ss_pred hcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 004943 499 CIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILG 578 (722)
Q Consensus 499 ~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG 578 (722)
..|+++++...++.+... +... ....+..... .+-......|....+.+. ...........-++...... ...+
T Consensus 198 ~~G~~~~A~~~~~~~~~~-~~~~--~~~~~~~~~~-~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~~~~~~~~-~~~a 271 (355)
T cd05804 198 ERGDYEAALAIYDTHIAP-SAES--DPALDLLDAA-SLLWRLELAGHVDVGDRW-EDLADYAAWHFPDHGLAFND-LHAA 271 (355)
T ss_pred HCCCHHHHHHHHHHHhcc-ccCC--ChHHHHhhHH-HHHHHHHhcCCCChHHHH-HHHHHHHHhhcCcccchHHH-HHHH
Confidence 989988888888776332 1111 1111110000 111112234543333332 22222211111111111222 3577
Q ss_pred HHHHhCCChHHHHHHHHHHHHHHHH---cCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHHHHHHHhHHHHH
Q 004943 579 NLALALHDTVQAREILRSSLTLAKK---LYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDELQKRLAD 650 (722)
Q Consensus 579 ~~~~a~g~~~qA~~~l~~Al~lAkk---i~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~l~~~~~~ 650 (722)
..+...|+.++|...+.+....++. .+.....+......+-++...|+++.|.+.+.........++--+++
T Consensus 272 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~ggs~aq 346 (355)
T cd05804 272 LALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARIGGSHAQ 346 (355)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 8889999999999999999999988 66666778888899999999999999999999999888776654443
No 31
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.89 E-value=1.4e-05 Score=96.83 Aligned_cols=204 Identities=11% Similarity=-0.117 Sum_probs=143.5
Q ss_pred hHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcch-hHHHHHHHH
Q 004943 414 KVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK-SMQAMCHAY 492 (722)
Q Consensus 414 Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~-~~~A~alln 492 (722)
++.+ ..+|++++|++.|+++++.....|+. ....+|.++..+|++++|+.+|++++...... .........
T Consensus 244 l~~L-l~~g~~~eA~~~~~~ll~~~~~~P~~-------a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~ 315 (765)
T PRK10049 244 LGAL-LARDRYKDVISEYQRLKAEGQIIPPW-------AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELAD 315 (765)
T ss_pred HHHH-HHhhhHHHHHHHHHHhhccCCCCCHH-------HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHH
Confidence 4544 57799999999999988763333442 23335889999999999999999877543221 111233455
Q ss_pred HHHHHHhcCChhHHHHHHHHhcchhc-------ccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 004943 493 AAVSYFCIGDAESSSQAIDLIGPVYQ-------MKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMG 565 (722)
Q Consensus 493 la~v~l~~G~~e~a~~aL~l~~~l~r-------~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~g 565 (722)
++.++...|+++++.+.++.+..... .....+ -.....+...+|.++..+|++++|...+++++... =+
T Consensus 316 L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p-~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~---P~ 391 (765)
T PRK10049 316 LFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIP-NDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA---PG 391 (765)
T ss_pred HHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCC-CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC
Confidence 66677888998887766665543210 000001 10134567788999999999999999999998772 23
Q ss_pred ChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHH
Q 004943 566 NLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRK 639 (722)
Q Consensus 566 d~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~ 639 (722)
| ...+..+|.++...|++++|++.++.|+.+. +|-. .....++.++...|+.++|...++...+
T Consensus 392 n----~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~---Pd~~---~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 392 N----QGLRIDYASVLQARGWPRAAENELKKAEVLE---PRNI---NLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC---CCCh---HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3 3588999999999999999999999999866 5542 3666777788899998888775554443
No 32
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.89 E-value=1.3e-07 Score=100.75 Aligned_cols=247 Identities=14% Similarity=0.063 Sum_probs=177.2
Q ss_pred ccCcchhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhH
Q 004943 336 WLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKV 415 (722)
Q Consensus 336 WLpk~~l~aLvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg 415 (722)
|-|+.+--+-.|-=.+..+...|.+++|.+++.++.+. ..+.++... .+..+++.+
T Consensus 27 ~~~~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~----~~~~~~~~~--------------------Aa~~~~~Aa 82 (282)
T PF14938_consen 27 KKPDYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADC----YEKLGDKFE--------------------AAKAYEEAA 82 (282)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHH----HHHTT-HHH--------------------HHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH----HHHcCCHHH--------------------HHHHHHHHH
Confidence 45666777888888899999999999999999999999 677665332 344456667
Q ss_pred HHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhhcchh---HHHHHHH
Q 004943 416 AVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSV-GCYSEAAFHYVEAAKITESKS---MQAMCHA 491 (722)
Q Consensus 416 ~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~al-G~~~~Al~~f~~AL~l~~~~~---~~A~all 491 (722)
.++... ++.+|++.+.+|++++...|+. ...+.++..+|.++... |+++.|..+|++|+...+..+ ....|..
T Consensus 83 ~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~--~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~ 159 (282)
T PF14938_consen 83 NCYKKG-DPDEAIECYEKAIEIYREAGRF--SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLL 159 (282)
T ss_dssp HHHHHT-THHHHHHHHHHHHHHHHHCT-H--HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHhh-CHHHHHHHHHHHHHHHHhcCcH--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHH
Confidence 776555 9999999999999999999997 45789999999999999 999999999999998876543 6678889
Q ss_pred HHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHH
Q 004943 492 YAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVS 571 (722)
Q Consensus 492 nla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a 571 (722)
++|.++...|+++++...++.+...+...+.. -..--..++..+.+++..|++..|...+.+.....- ...+ .-++
T Consensus 160 ~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~--~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~-~F~~-s~E~ 235 (282)
T PF14938_consen 160 KAADLYARLGRYEEAIEIYEEVAKKCLENNLL--KYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDP-SFAS-SREY 235 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTT--GHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTST-TSTT-SHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHhhccccc--chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCCC-cHHH
Confidence 99999999999988888887766543322211 111223567788999999999999999998876632 2334 6677
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 004943 572 QYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTAL 620 (722)
Q Consensus 572 ~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l 620 (722)
..+..|=..+-. ||. +.+..++.-..++.-. .-|-...|-.+
T Consensus 236 ~~~~~l~~A~~~-~D~----e~f~~av~~~d~~~~l--d~w~~~~l~~~ 277 (282)
T PF14938_consen 236 KFLEDLLEAYEE-GDV----EAFTEAVAEYDSISRL--DNWKTKMLLKI 277 (282)
T ss_dssp HHHHHHHHHHHT-T-C----CCHHHHCHHHTTSS-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHh-CCH----HHHHHHHHHHcccCcc--HHHHHHHHHHH
Confidence 777777676655 433 4556666666666543 34555555443
No 33
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.83 E-value=3.1e-05 Score=91.41 Aligned_cols=475 Identities=14% Similarity=0.108 Sum_probs=263.5
Q ss_pred HHHHHHHhHHH---HHhhccHhHHhHHHHHHhccCCCCChHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCc
Q 004943 4 VAEGLWGLADY---HENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPS 80 (722)
Q Consensus 4 ~~~~L~~lAe~---~~~~~~i~~ai~CLeA~l~~~~~l~p~~EA~~rLrla~iL~e~T~N~~~A~thLeka~~l~~~~~~ 80 (722)
++.+|.+|++. |..++.+..|+.=+..+++-+.. .|.+ +. ++|+= |..+.|...+.+.-+-++. ...
T Consensus 232 ~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~-nP~~--l~--~LAn~-fyfK~dy~~v~~la~~ai~----~t~ 301 (1018)
T KOG2002|consen 232 CVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNE-NPVA--LN--HLANH-FYFKKDYERVWHLAEHAIK----NTE 301 (1018)
T ss_pred hHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCC-CcHH--HH--HHHHH-HhhcccHHHHHHHHHHHHH----hhh
Confidence 34555566554 66667888898888888875542 2332 22 23333 4456666665555554432 223
Q ss_pred chhhhhhhhHHHHHHHHHcCCCchHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHhHhhhcCChHHHHHHHHhHHHHH
Q 004943 81 CFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCA 160 (722)
Q Consensus 81 ~~dlk~~~~~lLa~~y~~~~~~~~~k~~l~k~i~~~~~~~~~~~~~~W~~~f~f~la~~~~~~~d~~~A~~~L~~g~~~A 160 (722)
+.-++-+..+.++|+||.+|....+++-=..++..... + ..+. .|-+++..+..||...|+-..++....
T Consensus 302 ~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d------~--~~l~-~~GlgQm~i~~~dle~s~~~fEkv~k~- 371 (1018)
T KOG2002|consen 302 NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADND------N--FVLP-LVGLGQMYIKRGDLEESKFCFEKVLKQ- 371 (1018)
T ss_pred hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCC------C--cccc-ccchhHHHHHhchHHHHHHHHHHHHHh-
Confidence 44677778889999999999887776555555533221 1 1111 124788898999999998888875432
Q ss_pred hhcCChhHHHHHHHHHHHHHhcccCChhHHHHHHHhhhHHhhhcCccccccccchhhhhhHHHHHHHhhhhhhhhhhhhh
Q 004943 161 TEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIFYRLRICDYKNAAHHV 240 (722)
Q Consensus 161 ~~~~~~~~~v~f~l~~~~~~L~~~~~~~~v~~~l~~~~~~~~~i~~~~~~~~~g~~~~~e~l~i~~~l~ic~~~~~~~~v 240 (722)
..++ ++.+-.|..++.+.. ......+.+.+..+...+.- +
T Consensus 372 ~p~~---~etm~iLG~Lya~~~--~~~~~~d~a~~~l~K~~~~~-----------------------------------~ 411 (1018)
T KOG2002|consen 372 LPNN---YETMKILGCLYAHSA--KKQEKRDKASNVLGKVLEQT-----------------------------------P 411 (1018)
T ss_pred Ccch---HHHHHHHHhHHHhhh--hhhHHHHHHHHHHHHHHhcc-----------------------------------c
Confidence 2222 233333333333332 22222333322222222200 1
Q ss_pred hhHHHHHHHhHHHHHHHHHHhhhhHHhhhhcCCCCCChhhhHHHHHHHHHHHHHHHhcccCcCcccccCCccccCCCccc
Q 004943 241 DNLDAAMKADKQKMQEIQQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNARQA 320 (722)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~lq~~l~~~~~~~~~~~~~l~~~~~~~~~~~ 320 (722)
...+.++..+ .+-.++..+..|+ -+..-+..
T Consensus 412 ~d~~a~l~la--ql~e~~d~~~sL~------------------------~~~~A~d~----------------------- 442 (1018)
T KOG2002|consen 412 VDSEAWLELA--QLLEQTDPWASLD------------------------AYGNALDI----------------------- 442 (1018)
T ss_pred ccHHHHHHHH--HHHHhcChHHHHH------------------------HHHHHHHH-----------------------
Confidence 1122222100 0000000000011 11111111
Q ss_pred cCcccccCCCCCcccccCcchhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHH
Q 004943 321 WGDKLVLAPSPMDGEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMA 400 (722)
Q Consensus 321 ~~d~~~~~~~~~~~~WLpk~~l~aLvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~ 400 (722)
+..-.-++-.+||.-. +...+..|.+.+|..++..|+..+.. --+.+.. ...
T Consensus 443 ----L~~~~~~ip~E~LNNv----------aslhf~~g~~~~A~~~f~~A~~~~~~----~~n~de~--~~~-------- 494 (1018)
T KOG2002|consen 443 ----LESKGKQIPPEVLNNV----------ASLHFRLGNIEKALEHFKSALGKLLE----VANKDEG--KST-------- 494 (1018)
T ss_pred ----HHHcCCCCCHHHHHhH----------HHHHHHhcChHHHHHHHHHHhhhhhh----hcCcccc--ccc--------
Confidence 0000000112333211 23344568899999999999888332 2222210 001
Q ss_pred HHHHHHHHHHHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchh--------------------------hhhHHHHHH
Q 004943 401 GVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTIL--------------------------QACESMIEM 454 (722)
Q Consensus 401 ~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~--------------------------~~~~a~i~~ 454 (722)
.+.+..|++.+.-..+++..|.+.|...+..+-.+-|-. ...-+.+..
T Consensus 495 ------~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~ars 568 (1018)
T KOG2002|consen 495 ------NLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARS 568 (1018)
T ss_pred ------hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHH
Confidence 244556777777777777777777776655321111100 000112233
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCC-----hh----HHHHHHHHhcchhcccccccC
Q 004943 455 LRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGD-----AE----SSSQAIDLIGPVYQMKDTING 525 (722)
Q Consensus 455 llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~-----~e----~a~~aL~l~~~l~r~~~~~~~ 525 (722)
++|.++.+.....-|..-|...++.+... .-+++++.||.+|+..-. ++ ....|+.+.+.+.+..+.
T Consensus 569 l~G~~~l~k~~~~~a~k~f~~i~~~~~~~-~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk--- 644 (1018)
T KOG2002|consen 569 LLGNLHLKKSEWKPAKKKFETILKKTSTK-TDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK--- 644 (1018)
T ss_pred HHHHHHHhhhhhcccccHHHHHHhhhccC-CchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc---
Confidence 44444444444444444333332221111 234667777777764321 21 177888887776664432
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcC
Q 004943 526 VREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLY 605 (722)
Q Consensus 526 ~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~ 605 (722)
-.++-+.+|.+.-..|++.+|+..|.++-+... +.-+ +..+||++|..+|++..|.+|++..+..+-+-.
T Consensus 645 ---N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~d------v~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~ 714 (1018)
T KOG2002|consen 645 ---NMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFED------VWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKN 714 (1018)
T ss_pred ---hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCc------eeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 236788999999999999999999999987754 4555 777999999999999999999999999888666
Q ss_pred ChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHH
Q 004943 606 DIPTQIWALSVLTALYQQLGDRGNEMENDEYRRK 639 (722)
Q Consensus 606 D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~ 639 (722)
+ ..++.-|++++-..|...++.++...+..
T Consensus 715 ~----~~vl~~Lara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 715 R----SEVLHYLARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred C----HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 6 45788899999999998888776655544
No 34
>PRK12370 invasion protein regulator; Provisional
Probab=98.82 E-value=3.4e-07 Score=106.66 Aligned_cols=214 Identities=11% Similarity=-0.016 Sum_probs=151.0
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHHHHHHHHH
Q 004943 356 PKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMK 435 (722)
Q Consensus 356 ~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~~l~~Al 435 (722)
..+.+++|...+++|+++ ++.. ...+..+|.++...|++++|.+.+++++
T Consensus 316 ~~~~~~~A~~~~~~Al~l---------dP~~---------------------~~a~~~lg~~~~~~g~~~~A~~~~~~Al 365 (553)
T PRK12370 316 KQNAMIKAKEHAIKATEL---------DHNN---------------------PQALGLLGLINTIHSEYIVGSLLFKQAN 365 (553)
T ss_pred cchHHHHHHHHHHHHHhc---------CCCC---------------------HHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 556788999999988887 2221 2223457999999999999999999999
Q ss_pred HHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcc
Q 004943 436 NWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGP 515 (722)
Q Consensus 436 ~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~ 515 (722)
++. |+. +.+++.+|.++...|++++|+.+|+.++++..+.... ..+.+.+++..|+++++...+..+..
T Consensus 366 ~l~---P~~-----~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~---~~~~~~~~~~~g~~eeA~~~~~~~l~ 434 (553)
T PRK12370 366 LLS---PIS-----ADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAA---GITKLWITYYHTGIDDAIRLGDELRS 434 (553)
T ss_pred HhC---CCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhh---HHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 873 443 3458899999999999999999999999886654321 22334456667888766555544322
Q ss_pred hhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 004943 516 VYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILR 595 (722)
Q Consensus 516 l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~ 595 (722)
. ..++ ...++..+|.++..+|++++|+..+.+.+.. ..+ -..+.+.|+..|...| +.|...++
T Consensus 435 ~--~~p~------~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~----~~~---~~~~~~~l~~~~~~~g--~~a~~~l~ 497 (553)
T PRK12370 435 Q--HLQD------NPILLSMQVMFLSLKGKHELARKLTKEISTQ----EIT---GLIAVNLLYAEYCQNS--ERALPTIR 497 (553)
T ss_pred h--cccc------CHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc----cch---hHHHHHHHHHHHhccH--HHHHHHHH
Confidence 1 0111 2346788999999999999999999876443 222 2246678888888877 47888788
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHH
Q 004943 596 SSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMEN 633 (722)
Q Consensus 596 ~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~ 633 (722)
..+.....-... ...+..+|.-.||++.+...
T Consensus 498 ~ll~~~~~~~~~------~~~~~~~~~~~g~~~~~~~~ 529 (553)
T PRK12370 498 EFLESEQRIDNN------PGLLPLVLVAHGEAIAEKMW 529 (553)
T ss_pred HHHHHhhHhhcC------chHHHHHHHHHhhhHHHHHH
Confidence 866655544332 22277888999998888765
No 35
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.80 E-value=2.1e-06 Score=90.70 Aligned_cols=241 Identities=16% Similarity=0.049 Sum_probs=175.5
Q ss_pred HHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHH
Q 004943 349 MVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQ 428 (722)
Q Consensus 349 ls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~ 428 (722)
+.|.-+...++.|||...+.+-++. +++.. -+.--||.+++.+|+.|.|+
T Consensus 40 v~GlNfLLs~Q~dKAvdlF~e~l~~----------d~~t~--------------------e~~ltLGnLfRsRGEvDRAI 89 (389)
T COG2956 40 VKGLNFLLSNQPDKAVDLFLEMLQE----------DPETF--------------------EAHLTLGNLFRSRGEVDRAI 89 (389)
T ss_pred HhHHHHHhhcCcchHHHHHHHHHhc----------Cchhh--------------------HHHHHHHHHHHhcchHHHHH
Confidence 3455555567778888777665553 23311 12224799999999999999
Q ss_pred HHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHhcCChhHHH
Q 004943 429 EALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES-KSMQAMCHAYAAVSYFCIGDAESSS 507 (722)
Q Consensus 429 ~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~-~~~~A~allnla~v~l~~G~~e~a~ 507 (722)
+.....++ .||+......++..-+|.-+++.|-+|.|+..|. ..-+ ..-..-|+-.+-.+|....+.+.
T Consensus 90 RiHQ~L~~----spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~----~L~de~efa~~AlqqLl~IYQ~treW~K-- 159 (389)
T COG2956 90 RIHQTLLE----SPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFN----QLVDEGEFAEGALQQLLNIYQATREWEK-- 159 (389)
T ss_pred HHHHHHhc----CCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHH----HHhcchhhhHHHHHHHHHHHHHhhHHHH--
Confidence 88765554 7887666778899999999999999999999994 3333 44455666677778877555544
Q ss_pred HHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCCh
Q 004943 508 QAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDT 587 (722)
Q Consensus 508 ~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~ 587 (722)
|.+.++.+....++...+ +.|..+--++..+....+.+.|+..+.+||+...+ . ..+-..||.++...|++
T Consensus 160 -AId~A~~L~k~~~q~~~~-eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~--c-----vRAsi~lG~v~~~~g~y 230 (389)
T COG2956 160 -AIDVAERLVKLGGQTYRV-EIAQFYCELAQQALASSDVDRARELLKKALQADKK--C-----VRASIILGRVELAKGDY 230 (389)
T ss_pred -HHHHHHHHHHcCCccchh-HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc--c-----eehhhhhhHHHHhccch
Confidence 333333332222222323 56888889999999999999999999999998432 1 24566899999999999
Q ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHHHHHH
Q 004943 588 VQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDE 643 (722)
Q Consensus 588 ~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~ 643 (722)
++|.+.++..+. .|+.--.-++..|..+|+..|++++....+...+.....
T Consensus 231 ~~AV~~~e~v~e-----Qn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 231 QKAVEALERVLE-----QNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred HHHHHHHHHHHH-----hChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 999999988776 466566778889999999999999998877776665444
No 36
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.79 E-value=3.4e-07 Score=98.27 Aligned_cols=200 Identities=13% Similarity=0.045 Sum_probs=137.1
Q ss_pred HHHHHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHH
Q 004943 407 LMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQ 486 (722)
Q Consensus 407 ~a~lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~ 486 (722)
.+..+.++|.++...|++++|...|.+++++ .|+. +.+++.+|.++...|++++|...|..++++..+.
T Consensus 63 ~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l---~P~~-----~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~--- 131 (296)
T PRK11189 63 RAQLHYERGVLYDSLGLRALARNDFSQALAL---RPDM-----ADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTY--- 131 (296)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc---CCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---
Confidence 3455677899999999999999999999986 3443 4678999999999999999999999999875443
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 004943 487 AMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGN 566 (722)
Q Consensus 487 A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd 566 (722)
..++.|+|.++...|+++++.+.++.+... .+++ . . . ..+. ......+++++|...+.++..... -+
T Consensus 132 ~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~-~-~--~-~~~~---~l~~~~~~~~~A~~~l~~~~~~~~---~~ 198 (296)
T PRK11189 132 NYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPND-P-Y--R-ALWL---YLAESKLDPKQAKENLKQRYEKLD---KE 198 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCC-H-H--H-HHHH---HHHHccCCHHHHHHHHHHHHhhCC---cc
Confidence 456789999999999998877777665443 1111 1 1 1 1121 123467899999999988764311 12
Q ss_pred hHHHHHHHHHHHHHHHhCCChHHH--HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHH
Q 004943 567 LQLVSQYLTILGNLALALHDTVQA--REILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRK 639 (722)
Q Consensus 567 ~~l~a~~L~~LG~~~~a~g~~~qA--~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~ 639 (722)
.+. .+.++...|+..++ .+.+..++..+.++... ..+++..||.+|...|++++|..+|+.+.+
T Consensus 199 ~~~-------~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~--~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 199 QWG-------WNIVEFYLGKISEETLMERLKAGATDNTELAER--LCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred ccH-------HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 122 23334445555433 32333322222233222 346788999999999999999999877663
No 37
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.76 E-value=6.9e-07 Score=95.93 Aligned_cols=221 Identities=14% Similarity=0.078 Sum_probs=146.6
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhC
Q 004943 343 YALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRS 422 (722)
Q Consensus 343 ~aLvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g 422 (722)
.+-.|+--++.+...|.+++|...++++++. + +. ....+.++|.++...|
T Consensus 63 ~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l---------~-P~--------------------~~~a~~~lg~~~~~~g 112 (296)
T PRK11189 63 RAQLHYERGVLYDSLGLRALARNDFSQALAL---------R-PD--------------------MADAYNYLGIYLTQAG 112 (296)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc---------C-CC--------------------CHHHHHHHHHHHHHCC
Confidence 4556778888999999999999999999887 2 22 2334467899999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCC
Q 004943 423 GFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGD 502 (722)
Q Consensus 423 ~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~ 502 (722)
++++|.+.+.+++++. |+. ..++.++|.++...|++++|+..|..+++...+..... .+.. +....++
T Consensus 113 ~~~~A~~~~~~Al~l~---P~~-----~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~-~~~~---l~~~~~~ 180 (296)
T PRK11189 113 NFDAAYEAFDSVLELD---PTY-----NYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRA-LWLY---LAESKLD 180 (296)
T ss_pred CHHHHHHHHHHHHHhC---CCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH-HHHH---HHHccCC
Confidence 9999999999999863 442 34688999999999999999999999998765443211 1111 2233456
Q ss_pred hhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH--hcCChHHHHHHHHHHHHH
Q 004943 503 AESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHN--HMGNLQLVSQYLTILGNL 580 (722)
Q Consensus 503 ~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~--~~gd~~l~a~~L~~LG~~ 580 (722)
++++...++...... .. . . + ..+.++...|++.++ ..+..+.+.... +++ .-.+.+...||.+
T Consensus 181 ~~~A~~~l~~~~~~~--~~--~-~------~-~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~--~~~~ea~~~Lg~~ 245 (296)
T PRK11189 181 PKQAKENLKQRYEKL--DK--E-Q------W-GWNIVEFYLGKISEE-TLMERLKAGATDNTELA--ERLCETYFYLAKY 245 (296)
T ss_pred HHHHHHHHHHHHhhC--Cc--c-c------c-HHHHHHHHccCCCHH-HHHHHHHhcCCCcHHHH--HHHHHHHHHHHHH
Confidence 666666664332210 11 0 1 1 124445566776554 344444422110 121 2246789999999
Q ss_pred HHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Q 004943 581 ALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQ 622 (722)
Q Consensus 581 ~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~ 622 (722)
+...|++++|+.+++.|+.+- .+|-..=.+++..|..+..
T Consensus 246 ~~~~g~~~~A~~~~~~Al~~~--~~~~~e~~~~~~e~~~~~~ 285 (296)
T PRK11189 246 YLSLGDLDEAAALFKLALANN--VYNFVEHRYALLELALLGQ 285 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CchHHHHHHHHHHHHHHHh
Confidence 999999999999999999543 3344343445555555433
No 38
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.75 E-value=3.3e-06 Score=91.87 Aligned_cols=229 Identities=11% Similarity=-0.061 Sum_probs=154.6
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhC
Q 004943 343 YALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRS 422 (722)
Q Consensus 343 ~aLvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g 422 (722)
...+..+-+......|++++|.+.++++++. .++. ...+..+|.++...|
T Consensus 113 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~---------~p~~---------------------~~~~~~la~i~~~~g 162 (355)
T cd05804 113 YWYLLGMLAFGLEEAGQYDRAEEAARRALEL---------NPDD---------------------AWAVHAVAHVLEMQG 162 (355)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---------CCCC---------------------cHHHHHHHHHHHHcC
Confidence 3344455667778899999999999999988 1111 122345799999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHH--HHHHHHHhc
Q 004943 423 GFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHA--YAAVSYFCI 500 (722)
Q Consensus 423 ~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~all--nla~v~l~~ 500 (722)
++++|.+.+.++++.....|+. ....+..+|.++...|++++|...|.+++.............. .+...+...
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~----~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 238 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSML----RGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELA 238 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcch----hHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhc
Confidence 9999999999999876553332 2356778999999999999999999887543221111111111 222223344
Q ss_pred CChhHHHH---HHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh---cCChHHHHHHH
Q 004943 501 GDAESSSQ---AIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNH---MGNLQLVSQYL 574 (722)
Q Consensus 501 G~~e~a~~---aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~---~gd~~l~a~~L 574 (722)
|..+...+ +.+...+. ..+... . . .-...+.++...|+.++|...+......+. . .+.........
T Consensus 239 g~~~~~~~w~~~~~~~~~~--~~~~~~-~--~--~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~~~ 310 (355)
T cd05804 239 GHVDVGDRWEDLADYAAWH--FPDHGL-A--F--NDLHAALALAGAGDKDALDKLLAALKGRAS-SADDNKQPARDVGLP 310 (355)
T ss_pred CCCChHHHHHHHHHHHHhh--cCcccc-h--H--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHh-ccCchhhhHHhhhHH
Confidence 43322222 22222221 011111 1 1 112456666789999999999999988865 4 34456677888
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHH
Q 004943 575 TILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWA 613 (722)
Q Consensus 575 ~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~a 613 (722)
...+.+++..|+.++|...+.+|+.++..+|=-..|.-+
T Consensus 311 ~l~A~~~~~~g~~~~A~~~L~~al~~a~~~ggs~aq~~~ 349 (355)
T cd05804 311 LAEALYAFAEGNYATALELLGPVRDDLARIGGSHAQRDV 349 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 999999999999999999999999999999876665443
No 39
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.73 E-value=7.2e-07 Score=91.65 Aligned_cols=176 Identities=12% Similarity=0.048 Sum_probs=129.7
Q ss_pred HHHHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHH
Q 004943 408 MQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQA 487 (722)
Q Consensus 408 a~lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A 487 (722)
+..+.++|..+...|+|++|...+++++......|. ...+++.+|..+...|++++|...|+.+++...+.....
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~-----~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPY-----AEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchh-----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 444567899999999999999999998775533322 235688999999999999999999999998887666656
Q ss_pred HHHHHHHHHHHhc--------CChhHHHHHHHHhcchhcccccccChHHH------------HHHHHHHHHHHHhcCCHH
Q 004943 488 MCHAYAAVSYFCI--------GDAESSSQAIDLIGPVYQMKDTINGVREE------------ASLHFAYGLLLMRQQDFQ 547 (722)
Q Consensus 488 ~allnla~v~l~~--------G~~e~a~~aL~l~~~l~r~~~~~~~~~~~------------A~al~~lG~~~~~~G~~~ 547 (722)
.++.++|.++... |+++.+.+.++.+. +..++.... .+ ....+.+|..++.+|++.
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~---~~~p~~~~~-~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~ 183 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELI---RRYPNSEYA-PDAKKRMDYLRNRLAGKELYVARFYLKRGAYV 183 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHH---HHCCCChhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCChH
Confidence 6788889988765 33443444444332 222211101 01 122357889999999999
Q ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHH
Q 004943 548 EARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRS 596 (722)
Q Consensus 548 eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~ 596 (722)
+|...++++++.. .+......++..+|.++...|++++|.++++.
T Consensus 184 ~A~~~~~~al~~~----p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~ 228 (235)
T TIGR03302 184 AAINRFETVVENY----PDTPATEEALARLVEAYLKLGLKDLAQDAAAV 228 (235)
T ss_pred HHHHHHHHHHHHC----CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999998772 23355578999999999999999999987654
No 40
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.69 E-value=5.8e-06 Score=92.77 Aligned_cols=243 Identities=11% Similarity=0.058 Sum_probs=148.3
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhC
Q 004943 343 YALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRS 422 (722)
Q Consensus 343 ~aLvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g 422 (722)
..+.|++.+......|+++++.+++.++.+. .++..- . +.. ..+.++...|
T Consensus 117 ~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~-------~p~~~l----------------~--~~~----~~a~l~l~~~ 167 (409)
T TIGR00540 117 PVLNLIKAAEAAQQRGDEARANQHLEEAAEL-------AGNDNI----------------L--VEI----ARTRILLAQN 167 (409)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCcCch----------------H--HHH----HHHHHHHHCC
Confidence 3577889999999999999999999998765 222110 0 011 1378888899
Q ss_pred CHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh-cchh-H---------------
Q 004943 423 GFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKIT-ESKS-M--------------- 485 (722)
Q Consensus 423 ~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~-~~~~-~--------------- 485 (722)
++++|.+.++..++. .|+. +.++...|..+...|++++|+..+...++.. .+.. .
T Consensus 168 ~~~~Al~~l~~l~~~---~P~~-----~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~ 239 (409)
T TIGR00540 168 ELHAARHGVDKLLEM---APRH-----KEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEA 239 (409)
T ss_pred CHHHHHHHHHHHHHh---CCCC-----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999997776664 4553 3568889999999999999999887766431 1110 0
Q ss_pred ----------------------HHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhc
Q 004943 486 ----------------------QAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQ 543 (722)
Q Consensus 486 ----------------------~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~ 543 (722)
........|..+...|+++++...++..... ..+.. ..+.. ..........
T Consensus 240 ~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~---~~~~~-~l~~~~~l~~ 312 (409)
T TIGR00540 240 MADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDR---AISLP-LCLPIPRLKP 312 (409)
T ss_pred HHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcc---cchhH-HHHHhhhcCC
Confidence 0111222333444444444433333322221 11111 01111 1122223345
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH
Q 004943 544 QDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQ 623 (722)
Q Consensus 544 G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~ 623 (722)
++..++...++++++. + -.|+. +..+..||++++..|++++|.+.++.+..+... +|.. ....|++++..
T Consensus 313 ~~~~~~~~~~e~~lk~-~--p~~~~--~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~-p~~~----~~~~La~ll~~ 382 (409)
T TIGR00540 313 EDNEKLEKLIEKQAKN-V--DDKPK--CCINRALGQLLMKHGEFIEAADAFKNVAACKEQ-LDAN----DLAMAADAFDQ 382 (409)
T ss_pred CChHHHHHHHHHHHHh-C--CCChh--HHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcC-CCHH----HHHHHHHHHHH
Confidence 6666666666666654 1 22322 467888899999999999999988865554432 4432 23377888899
Q ss_pred cCCchhHhHHHHHHHH
Q 004943 624 LGDRGNEMENDEYRRK 639 (722)
Q Consensus 624 ~Gd~~~A~e~~~~~~~ 639 (722)
.|++++|.+.++....
T Consensus 383 ~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 383 AGDKAEAAAMRQDSLG 398 (409)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999888887775543
No 41
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.69 E-value=1.2e-06 Score=88.97 Aligned_cols=191 Identities=18% Similarity=0.197 Sum_probs=147.5
Q ss_pred hhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 004943 413 NKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAY 492 (722)
Q Consensus 413 ~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~alln 492 (722)
.||+-|+.+|++..|.+.+++|++.- |+ -..+|..+..|++..|..+.|-+-|+.|+.+..+. ..+++|
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~D---Ps-----~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~---GdVLNN 108 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHD---PS-----YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNN---GDVLNN 108 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC---cc-----cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCc---cchhhh
Confidence 47999999999999999999999863 33 23558899999999999999999999999876554 456789
Q ss_pred HHHHHHhcCChhHHHHHHHHh--cchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHH
Q 004943 493 AAVSYFCIGDAESSSQAIDLI--GPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLV 570 (722)
Q Consensus 493 la~v~l~~G~~e~a~~aL~l~--~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~ 570 (722)
-|.-.+.+|+|+++.+=++.+ .|.|.. .+.++-++|....++|++..|+.+|+++|++-. +..
T Consensus 109 YG~FLC~qg~~~eA~q~F~~Al~~P~Y~~---------~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~----- 173 (250)
T COG3063 109 YGAFLCAQGRPEEAMQQFERALADPAYGE---------PSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFP----- 173 (250)
T ss_pred hhHHHHhCCChHHHHHHHHHHHhCCCCCC---------cchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCC-----
Confidence 999999999998743333322 354332 456788999999999999999999999999943 232
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHH
Q 004943 571 SQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEY 636 (722)
Q Consensus 571 a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~ 636 (722)
-++..|...+...|++.+|+-.++.=.. ..+ .++.++-+.-++-+..||.+.+.++-..
T Consensus 174 -~~~l~~a~~~~~~~~y~~Ar~~~~~~~~---~~~---~~A~sL~L~iriak~~gd~~~a~~Y~~q 232 (250)
T COG3063 174 -PALLELARLHYKAGDYAPARLYLERYQQ---RGG---AQAESLLLGIRIAKRLGDRAAAQRYQAQ 232 (250)
T ss_pred -hHHHHHHHHHHhcccchHHHHHHHHHHh---ccc---ccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 3667888999999999999877654221 122 4566777777888888988888765433
No 42
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.68 E-value=5e-07 Score=102.70 Aligned_cols=193 Identities=11% Similarity=0.058 Sum_probs=152.8
Q ss_pred hHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 004943 414 KVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYA 493 (722)
Q Consensus 414 Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnl 493 (722)
+|-|+-.|++++.|++++++|+.+- |+ -+.++++.|+=...+..||.|...|+.||+... ..-.|+.-+
T Consensus 427 ~GNcfSLQkdh~~Aik~f~RAiQld---p~-----faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~---rhYnAwYGl 495 (638)
T KOG1126|consen 427 LGNCFSLQKDHDTAIKCFKRAIQLD---PR-----FAYAYTLLGHESIATEEFDKAMKSFRKALGVDP---RHYNAWYGL 495 (638)
T ss_pred hcchhhhhhHHHHHHHHHHHhhccC---Cc-----cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc---hhhHHHHhh
Confidence 5888889999999999999999852 22 257799999999999999999999998886543 335678889
Q ss_pred HHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHH
Q 004943 494 AVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQY 573 (722)
Q Consensus 494 a~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~ 573 (722)
|.+|+.++.++.+.-.+..+.++ .+.+. ...-.+|..+++.|+.++|.+.+.+|+.+-. . | ...
T Consensus 496 G~vy~Kqek~e~Ae~~fqkA~~I--NP~ns-------vi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~--k-n----~l~ 559 (638)
T KOG1126|consen 496 GTVYLKQEKLEFAEFHFQKAVEI--NPSNS-------VILCHIGRIQHQLKRKDKALQLYEKAIHLDP--K-N----PLC 559 (638)
T ss_pred hhheeccchhhHHHHHHHhhhcC--Cccch-------hHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC--C-C----chh
Confidence 99999999988766666665555 11111 2344578999999999999999999999832 2 3 134
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHH
Q 004943 574 LTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRK 639 (722)
Q Consensus 574 L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~ 639 (722)
-...|.+++..+++++|...+++=-.++ +.+.-++.+||++|+..|..+.|.-+|--+..
T Consensus 560 ~~~~~~il~~~~~~~eal~~LEeLk~~v------P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 560 KYHRASILFSLGRYVEALQELEELKELV------PQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHhC------cchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 5677889999999999999888766654 44688999999999999999999987765543
No 43
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.68 E-value=0.00022 Score=86.37 Aligned_cols=233 Identities=12% Similarity=-0.019 Sum_probs=157.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhC
Q 004943 362 ECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRF 441 (722)
Q Consensus 362 kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~ 441 (722)
+.-...++||...+..+..-+..+. . .+.|. .+......+...+|+++++++.|+....-....
T Consensus 262 ~r~~~~d~ala~~~~l~~~~~~~p~---~----~~~~~---------~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~ 325 (822)
T PRK14574 262 ERFDIADKALADYQNLLTRWGKDPE---A----QADYQ---------RARIDRLGALLVRHQTADLIKEYEAMEAEGYKM 325 (822)
T ss_pred hhHHHHHHHHHHHHHHHhhccCCCc---c----chHHH---------HHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCC
Confidence 3334567777776665554443231 1 22221 122344566678899999999998887755555
Q ss_pred CchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcch---hHHHHHHHHHHHHHHhcCChhHHHHHHHHhcch--
Q 004943 442 PTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK---SMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPV-- 516 (722)
Q Consensus 442 ~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~---~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l-- 516 (722)
|+ .+....|..+.+.+..++|+.+|++++...... ........-|-..|+..++++++.+.++.+...
T Consensus 326 P~-------y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p 398 (822)
T PRK14574 326 PD-------YARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTP 398 (822)
T ss_pred CH-------HHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC
Confidence 55 457788999999999999999999887644321 111111233455678888888877777765431
Q ss_pred -----hcccc-cccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHH
Q 004943 517 -----YQMKD-TINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQA 590 (722)
Q Consensus 517 -----~r~~~-~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA 590 (722)
+...+ ...+-+. .+...++.++...|++.+|.+.+++.+..+ =||. ..+..+|.++...|.+.+|
T Consensus 399 ~~~~~~~~~~~~pn~d~~--~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a---P~n~----~l~~~~A~v~~~Rg~p~~A 469 (822)
T PRK14574 399 YQVGVYGLPGKEPNDDWI--EGQTLLVQSLVALNDLPTAQKKLEDLSSTA---PANQ----NLRIALASIYLARDLPRKA 469 (822)
T ss_pred cEEeccCCCCCCCCccHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCH----HHHHHHHHHHHhcCCHHHH
Confidence 11011 1111222 455556677778999999999999997773 5563 3566999999999999999
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhH
Q 004943 591 REILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEME 632 (722)
Q Consensus 591 ~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e 632 (722)
+..++.+..+ -+| ..++...++..+..+|+..+|..
T Consensus 470 ~~~~k~a~~l---~P~---~~~~~~~~~~~al~l~e~~~A~~ 505 (822)
T PRK14574 470 EQELKAVESL---APR---SLILERAQAETAMALQEWHQMEL 505 (822)
T ss_pred HHHHHHHhhh---CCc---cHHHHHHHHHHHHhhhhHHHHHH
Confidence 9999988887 233 36788899999999988877765
No 44
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.60 E-value=4.6e-07 Score=76.95 Aligned_cols=74 Identities=22% Similarity=0.232 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChH-HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Q 004943 529 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQ-LVSQYLTILGNLALALHDTVQAREILRSSLTLAKK 603 (722)
Q Consensus 529 ~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~-l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkk 603 (722)
.+.+++++|.++..+|++++|..++++|+++ .+..|+.. .++.++..||.++...|++++|+++++.|+.+.+|
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 5788999999999999999999999999999 55799865 57999999999999999999999999999999875
No 45
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.59 E-value=3.6e-07 Score=96.74 Aligned_cols=228 Identities=19% Similarity=0.144 Sum_probs=88.7
Q ss_pred HHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHHHH
Q 004943 351 VILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEA 430 (722)
Q Consensus 351 ~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~~ 430 (722)
+..+...|++++|.+.+.++... .....+. ..| ..+|.+....+++++|.+.
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~----~~~~~~~-----------~~~-------------~~~a~La~~~~~~~~A~~a 66 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQK----IAPPDDP-----------EYW-------------RLLADLAWSLGDYDEAIEA 66 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccc----ccccccc-----------ccc-------------ccccccccccccccccccc
Confidence 44555678888888877666555 1111111 122 3368889999999999999
Q ss_pred HHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHH
Q 004943 431 LVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAI 510 (722)
Q Consensus 431 l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL 510 (722)
|++++..-...|.. ...++.+ ...+++++|...+..+.+..++. ..+.....++...|+.+.+.+.+
T Consensus 67 y~~l~~~~~~~~~~--------~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~----~~l~~~l~~~~~~~~~~~~~~~l 133 (280)
T PF13429_consen 67 YEKLLASDKANPQD--------YERLIQL-LQDGDPEEALKLAEKAYERDGDP----RYLLSALQLYYRLGDYDEAEELL 133 (280)
T ss_dssp ----------------------------------------------------------------H-HHHTT-HHHHHHHH
T ss_pred cccccccccccccc--------ccccccc-ccccccccccccccccccccccc----chhhHHHHHHHHHhHHHHHHHHH
Confidence 99998764443332 3334444 68899999999997776544332 22333455677778888877777
Q ss_pred HHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHH
Q 004943 511 DLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQA 590 (722)
Q Consensus 511 ~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA 590 (722)
+.+..... .......+..+|.++...|++.+|...+++||+..- .| ..+++.+++++...|+.+++
T Consensus 134 ~~~~~~~~-------~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P---~~----~~~~~~l~~~li~~~~~~~~ 199 (280)
T PF13429_consen 134 EKLEELPA-------APDSARFWLALAEIYEQLGDPDKALRDYRKALELDP---DD----PDARNALAWLLIDMGDYDEA 199 (280)
T ss_dssp HHHHH-T----------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-T---T-----HHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHhccC-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CC----HHHHHHHHHHHHHCCChHHH
Confidence 76554311 112456788999999999999999999999999832 22 23677889999999999997
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHH
Q 004943 591 REILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRK 639 (722)
Q Consensus 591 ~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~ 639 (722)
...++........-++ ....++.+|...|++++|.++++...+
T Consensus 200 ~~~l~~~~~~~~~~~~------~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 200 REALKRLLKAAPDDPD------LWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHHHHHHHHH-HTSCC------HCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHH------HHHHHHHHhcccccccccccccccccc
Confidence 7777776665533333 234668889999999999999888665
No 46
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.59 E-value=8.4e-06 Score=91.19 Aligned_cols=233 Identities=13% Similarity=0.078 Sum_probs=138.9
Q ss_pred HHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCC
Q 004943 344 ALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSG 423 (722)
Q Consensus 344 aLvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~ 423 (722)
.+.|++........|+++++..+++++.+. +++. .++ ..+. .+.++..+|+
T Consensus 118 ~l~~llaA~aA~~~g~~~~A~~~l~~A~~~---------~~~~--------------~~~--~~l~----~a~l~l~~g~ 168 (398)
T PRK10747 118 VVNYLLAAEAAQQRGDEARANQHLERAAEL---------ADND--------------QLP--VEIT----RVRIQLARNE 168 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---------CCcc--------------hHH--HHHH----HHHHHHHCCC
Confidence 344778888889999999999999999766 1111 011 0111 3788999999
Q ss_pred HHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchh-------HHHH--------
Q 004943 424 FVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS-------MQAM-------- 488 (722)
Q Consensus 424 ~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~-------~~A~-------- 488 (722)
+++|++.+++..+.. |+. +.++..++..+...|++++|+..+....+...... ..++
T Consensus 169 ~~~Al~~l~~~~~~~---P~~-----~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~ 240 (398)
T PRK10747 169 NHAARHGVDKLLEVA---PRH-----PEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAM 240 (398)
T ss_pred HHHHHHHHHHHHhcC---CCC-----HHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999998887654 443 34577888889999999999988866543221110 0111
Q ss_pred ------------------------HHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcC
Q 004943 489 ------------------------CHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQ 544 (722)
Q Consensus 489 ------------------------allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G 544 (722)
+....|..++..|+++.+...++.... ... +. ... ..+|. ...|
T Consensus 241 ~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~---~~--~l~--~l~~~--l~~~ 308 (398)
T PRK10747 241 ADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQY---DE--RLV--LLIPR--LKTN 308 (398)
T ss_pred HhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCC---CH--HHH--HHHhh--ccCC
Confidence 112223334444444333333322211 010 00 100 11111 2335
Q ss_pred CHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHc
Q 004943 545 DFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQL 624 (722)
Q Consensus 545 ~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~ 624 (722)
+++++...+++-++. + ...+..+..+|.++...|++++|++.++.++... +|. .....|+.++...
T Consensus 309 ~~~~al~~~e~~lk~-~------P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~---P~~----~~~~~La~~~~~~ 374 (398)
T PRK10747 309 NPEQLEKVLRQQIKQ-H------GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR---PDA----YDYAWLADALDRL 374 (398)
T ss_pred ChHHHHHHHHHHHhh-C------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCH----HHHHHHHHHHHHc
Confidence 555555555444433 1 1113467788888888888888888888888752 332 2345688888888
Q ss_pred CCchhHhHHHHHHHH
Q 004943 625 GDRGNEMENDEYRRK 639 (722)
Q Consensus 625 Gd~~~A~e~~~~~~~ 639 (722)
|++++|.++|+....
T Consensus 375 g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 375 HKPEEAAAMRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHh
Confidence 888888888776544
No 47
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.56 E-value=7.2e-06 Score=84.19 Aligned_cols=181 Identities=14% Similarity=0.017 Sum_probs=136.2
Q ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccCh
Q 004943 447 ACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGV 526 (722)
Q Consensus 447 ~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~ 526 (722)
...+..++..|..+...|++++|...|++++....+......+..++|.+|...|+++++...++.+...+... .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~---~-- 104 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNH---P-- 104 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC---C--
Confidence 34567889999999999999999999999988776655556678899999999999988777777665542221 1
Q ss_pred HHHHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHHHHHhcCChHHH------------HHHHHHHHHHHHhCCC
Q 004943 527 REEASLHFAYGLLLMRQ--------QDFQEARNRLAKGLQIAHNHMGNLQLV------------SQYLTILGNLALALHD 586 (722)
Q Consensus 527 ~~~A~al~~lG~~~~~~--------G~~~eAk~~L~qAL~la~~~~gd~~l~------------a~~L~~LG~~~~a~g~ 586 (722)
....+++.+|.++... |++.+|...+.++++.-- .... ... ......+|..++..|+
T Consensus 105 -~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~-~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~ 181 (235)
T TIGR03302 105 -DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYP-NSEY-APDAKKRMDYLRNRLAGKELYVARFYLKRGA 181 (235)
T ss_pred -chHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCC-CChh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 1234678888888765 889999999999987622 1111 111 1122478899999999
Q ss_pred hHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHH
Q 004943 587 TVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRR 638 (722)
Q Consensus 587 ~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~ 638 (722)
+++|.+.++.++......+. ...+...++.+|...|++++|.++++...
T Consensus 182 ~~~A~~~~~~al~~~p~~~~---~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 182 YVAAINRFETVVENYPDTPA---TEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred hHHHHHHHHHHHHHCCCCcc---hHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999876544333 36688899999999999999998665543
No 48
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.55 E-value=6e-06 Score=88.08 Aligned_cols=205 Identities=17% Similarity=0.066 Sum_probs=149.4
Q ss_pred HHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcch---hHH
Q 004943 410 FLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK---SMQ 486 (722)
Q Consensus 410 lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~---~~~ 486 (722)
+.+.-|.++...++|++|.+.|.++.++....++. ...+..+...|.++... ++++|...|++|+.+.... ...
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~--~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~a 113 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDK--FEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQA 113 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-H--HHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 33667899999999999999999999999998886 44667778888887666 9999999999999876544 477
Q ss_pred HHHHHHHHHHHHhc-CChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 004943 487 AMCHAYAAVSYFCI-GDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMG 565 (722)
Q Consensus 487 A~allnla~v~l~~-G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~g 565 (722)
+.++.++|.+|-.. |+++.+.+.+..+..++...++ ......++..+|.++...|+|.+|...|++........-.
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~---~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l 190 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS---PHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNL 190 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC---hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccc
Confidence 89999999999998 8998866666666665554432 2345678889999999999999999999998876332122
Q ss_pred ChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 004943 566 NLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALY 621 (722)
Q Consensus 566 d~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~ 621 (722)
.+...-..+...+-+++..||+..|.+.+......--...+- -+......|-+.+
T Consensus 191 ~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s-~E~~~~~~l~~A~ 245 (282)
T PF14938_consen 191 LKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASS-REYKFLEDLLEAY 245 (282)
T ss_dssp TGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTS-HHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc-HHHHHHHHHHHHH
Confidence 234455566777889999999999988887766654444442 2344555555555
No 49
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=2.5e-06 Score=95.55 Aligned_cols=197 Identities=16% Similarity=0.175 Sum_probs=142.1
Q ss_pred hHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 004943 414 KVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYA 493 (722)
Q Consensus 414 Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnl 493 (722)
+|+-|..-|++++|.+++..|-.+-..++.. +-.-|+.....|..|+|...|..|-++...-. .=.+.+
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD~~fgpa--------Wl~fghsfa~e~EhdQAmaaY~tAarl~~G~h---lP~LYl 386 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLDPTFGPA--------WLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH---LPSLYL 386 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcCccccHH--------HHHHhHHhhhcchHHHHHHHHHHHHHhccCCc---chHHHH
Confidence 4777777788888888888887765555442 34456666777777777777766666554321 112445
Q ss_pred HHHHHhcCChhH----HHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChH-
Q 004943 494 AVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQ- 568 (722)
Q Consensus 494 a~v~l~~G~~e~----a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~- 568 (722)
|+=|.+.+..+- +.+|+.+. | .+ + ..++-+|.+.+.-+.+.+|..+|+.+|.-.. ..++..
T Consensus 387 gmey~~t~n~kLAe~Ff~~A~ai~-P-----~D-p------lv~~Elgvvay~~~~y~~A~~~f~~~l~~ik-~~~~e~~ 452 (611)
T KOG1173|consen 387 GMEYMRTNNLKLAEKFFKQALAIA-P-----SD-P------LVLHELGVVAYTYEEYPEALKYFQKALEVIK-SVLNEKI 452 (611)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC-C-----Cc-c------hhhhhhhheeehHhhhHHHHHHHHHHHHHhh-hcccccc
Confidence 555655555432 34444432 1 11 1 3577789999999999999999999997755 566633
Q ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHHHH
Q 004943 569 LVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKL 641 (722)
Q Consensus 569 l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~ 641 (722)
--.-.+++||+++...+.+++|...++.|+.+-.+..+ ++..+|-+|+-.|+.++|.++|..+..+.
T Consensus 453 ~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~------~~asig~iy~llgnld~Aid~fhKaL~l~ 519 (611)
T KOG1173|consen 453 FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDAS------THASIGYIYHLLGNLDKAIDHFHKALALK 519 (611)
T ss_pred chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchh------HHHHHHHHHHHhcChHHHHHHHHHHHhcC
Confidence 24457999999999999999999999999998876655 77788999999999999999998876554
No 50
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.51 E-value=6.6e-06 Score=83.61 Aligned_cols=187 Identities=11% Similarity=0.004 Sum_probs=136.1
Q ss_pred HHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHHH
Q 004943 350 VVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQE 429 (722)
Q Consensus 350 s~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~ 429 (722)
-++-++..|++..|.+-+++||++ |+.. .....-++.+|-..|+.+.|.+
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~---------DPs~---------------------~~a~~~~A~~Yq~~Ge~~~A~e 90 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEH---------DPSY---------------------YLAHLVRAHYYQKLGENDLADE 90 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh---------Cccc---------------------HHHHHHHHHHHHHcCChhhHHH
Confidence 367778899999999999999999 3221 1111236889999999999999
Q ss_pred HHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHH
Q 004943 430 ALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQA 509 (722)
Q Consensus 430 ~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~a 509 (722)
.|++|+.+--..+|. +|+-|...++.|++++|..+|.+|+.. ..-+..+..+-|+|++-++.|+++.+..-
T Consensus 91 ~YrkAlsl~p~~GdV--------LNNYG~FLC~qg~~~eA~q~F~~Al~~-P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~ 161 (250)
T COG3063 91 SYRKALSLAPNNGDV--------LNNYGAFLCAQGRPEEAMQQFERALAD-PAYGEPSDTLENLGLCALKAGQFDQAEEY 161 (250)
T ss_pred HHHHHHhcCCCccch--------hhhhhHHHHhCCChHHHHHHHHHHHhC-CCCCCcchhhhhhHHHHhhcCCchhHHHH
Confidence 999999986555554 999999999999999999999888742 23345677889999999999998876555
Q ss_pred HHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHH
Q 004943 510 IDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQ 589 (722)
Q Consensus 510 L~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~q 589 (722)
+.+....-.. ...++..++..+...|+|.+|+.++..-. +-|. .++.+|.+.-.+.-..||...
T Consensus 162 l~raL~~dp~---------~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~-----~~~~--~~A~sL~L~iriak~~gd~~~ 225 (250)
T COG3063 162 LKRALELDPQ---------FPPALLELARLHYKAGDYAPARLYLERYQ-----QRGG--AQAESLLLGIRIAKRLGDRAA 225 (250)
T ss_pred HHHHHHhCcC---------CChHHHHHHHHHHhcccchHHHHHHHHHH-----hccc--ccHHHHHHHHHHHHHhccHHH
Confidence 5554443111 22356678888889999999999887542 2333 455566555555555555554
Q ss_pred HH
Q 004943 590 AR 591 (722)
Q Consensus 590 A~ 591 (722)
+-
T Consensus 226 a~ 227 (250)
T COG3063 226 AQ 227 (250)
T ss_pred HH
Confidence 43
No 51
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.49 E-value=9.9e-06 Score=92.42 Aligned_cols=167 Identities=16% Similarity=0.159 Sum_probs=135.8
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhC
Q 004943 343 YALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRS 422 (722)
Q Consensus 343 ~aLvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g 422 (722)
|+=.|.+-|--+.....||+|.++++.||++ +++ =| .+...+|++|..++
T Consensus 454 faYayTLlGhE~~~~ee~d~a~~~fr~Al~~---------~~r----------------hY-----nAwYGlG~vy~Kqe 503 (638)
T KOG1126|consen 454 FAYAYTLLGHESIATEEFDKAMKSFRKALGV---------DPR----------------HY-----NAWYGLGTVYLKQE 503 (638)
T ss_pred cchhhhhcCChhhhhHHHHhHHHHHHhhhcC---------Cch----------------hh-----HHHHhhhhheeccc
Confidence 5557888888888889999999999999998 211 11 22268999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCC
Q 004943 423 GFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGD 502 (722)
Q Consensus 423 ~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~ 502 (722)
.++.|+-+|+.|+++- |. -..+..-+|...+.+|+.|+|+..|.+|..+-... -++..+-|.++...++
T Consensus 504 k~e~Ae~~fqkA~~IN---P~-----nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn---~l~~~~~~~il~~~~~ 572 (638)
T KOG1126|consen 504 KLEFAEFHFQKAVEIN---PS-----NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKN---PLCKYHRASILFSLGR 572 (638)
T ss_pred hhhHHHHHHHhhhcCC---cc-----chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCC---chhHHHHHHHHHhhcc
Confidence 9999999999999863 33 34667889999999999999999999998653222 2455666888888899
Q ss_pred hhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 004943 503 AESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQI 559 (722)
Q Consensus 503 ~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~l 559 (722)
++++-+-||.+..+ . ..++.+++.+|.+|.+.|..+-|+-++.-|+++
T Consensus 573 ~~eal~~LEeLk~~-------v--P~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 573 YVEALQELEELKEL-------V--PQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred hHHHHHHHHHHHHh-------C--cchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 99888888877765 1 138889999999999999999999999999887
No 52
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.43 E-value=2.4e-06 Score=90.46 Aligned_cols=192 Identities=16% Similarity=0.140 Sum_probs=102.0
Q ss_pred ccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHHHHHHHH
Q 004943 355 RPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQM 434 (722)
Q Consensus 355 ~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~~l~~A 434 (722)
...+++++|.++.+++.+. .+++.. +.....++...++|+++.+.+.++
T Consensus 88 ~~~~~~~~A~~~~~~~~~~-------~~~~~~------------------------l~~~l~~~~~~~~~~~~~~~l~~~ 136 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKAYER-------DGDPRY------------------------LLSALQLYYRLGDYDEAEELLEKL 136 (280)
T ss_dssp -------------------------------------------------------------H-HHHTT-HHHHHHHHHHH
T ss_pred ccccccccccccccccccc-------ccccch------------------------hhHHHHHHHHHhHHHHHHHHHHHH
Confidence 4678888988888777554 232111 122355677889999999999887
Q ss_pred HHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhc
Q 004943 435 KNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIG 514 (722)
Q Consensus 435 l~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~ 514 (722)
...- ..+ ..+..+...|.++...|+.++|+..|+++++...+.. .+..+++.+++..|+++++.+++....
T Consensus 137 ~~~~-~~~-----~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~---~~~~~l~~~li~~~~~~~~~~~l~~~~ 207 (280)
T PF13429_consen 137 EELP-AAP-----DSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDP---DARNALAWLLIDMGDYDEAREALKRLL 207 (280)
T ss_dssp HH-T---------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-H---HHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred Hhcc-CCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 7421 122 2356788999999999999999999999998766532 234556778888888888888887766
Q ss_pred chhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHH
Q 004943 515 PVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREIL 594 (722)
Q Consensus 515 ~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l 594 (722)
.... + +. ..+..+|.++...|++++|..+++++++. + -.| ..++..+|.++...|+.++|..+.
T Consensus 208 ~~~~--~-~~------~~~~~la~~~~~lg~~~~Al~~~~~~~~~-~--p~d----~~~~~~~a~~l~~~g~~~~A~~~~ 271 (280)
T PF13429_consen 208 KAAP--D-DP------DLWDALAAAYLQLGRYEEALEYLEKALKL-N--PDD----PLWLLAYADALEQAGRKDEALRLR 271 (280)
T ss_dssp HH-H--T-SC------CHCHHHHHHHHHHT-HHHHHHHHHHHHHH-S--TT-----HHHHHHHHHHHT------------
T ss_pred HHCc--C-HH------HHHHHHHHHhccccccccccccccccccc-c--ccc----cccccccccccccccccccccccc
Confidence 5531 1 11 23566789999999999999999999876 2 223 357789999999999999999999
Q ss_pred HHHHHHHH
Q 004943 595 RSSLTLAK 602 (722)
Q Consensus 595 ~~Al~lAk 602 (722)
+.++..-+
T Consensus 272 ~~~~~~l~ 279 (280)
T PF13429_consen 272 RQALRLLR 279 (280)
T ss_dssp --------
T ss_pred cccccccC
Confidence 98876543
No 53
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.38 E-value=3.3e-06 Score=71.70 Aligned_cols=76 Identities=17% Similarity=0.131 Sum_probs=68.5
Q ss_pred hHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhH-HHHHHHHHHHHHHHcCCchhHhHHHHHHHHHHH
Q 004943 567 LQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPT-QIWALSVLTALYQQLGDRGNEMENDEYRRKKLD 642 (722)
Q Consensus 567 ~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~-q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~ 642 (722)
++.++.+++.||.+|...|++++|+++++.|+++.+..|+... .++++..+|.+|...|++++|.++++...++.+
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 3567899999999999999999999999999999999998765 499999999999999999999999999888765
No 54
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.37 E-value=3.1e-05 Score=86.88 Aligned_cols=213 Identities=11% Similarity=0.058 Sum_probs=144.6
Q ss_pred HHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHHHH
Q 004943 351 VILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEA 430 (722)
Q Consensus 351 ~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~~ 430 (722)
+......|++++|...+++.++. . |. ...++.-++.++...|+|++|.+.
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~---------~-P~--------------------~~~~l~ll~~~~~~~~d~~~a~~~ 209 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEM---------A-PR--------------------HKEVLKLAEEAYIRSGAWQALDDI 209 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh---------C-CC--------------------CHHHHHHHHHHHHHHhhHHHHHHH
Confidence 66667789999988887776665 1 21 112234468888888999888887
Q ss_pred HHHHHHH-----------------------------------HHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004943 431 LVQMKNW-----------------------------------FIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVE 475 (722)
Q Consensus 431 l~~Al~l-----------------------------------~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~ 475 (722)
+.+.++. ....|+.. ...+.+....|..+...|++++|.....+
T Consensus 210 l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~-~~~~~l~~~~a~~l~~~g~~~~A~~~l~~ 288 (409)
T TIGR00540 210 IDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHR-RHNIALKIALAEHLIDCDDHDSAQEIIFD 288 (409)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHH-hCCHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 7776632 11122110 12457788889999999999999999999
Q ss_pred HHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004943 476 AAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAK 555 (722)
Q Consensus 476 AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~q 555 (722)
+++...+.....+..+. ...++..++++.+.+.++..... .+++ . .+..+..+|-++.+.|++++|+.+|++
T Consensus 289 ~l~~~pd~~~~~~~~l~-~~~~l~~~~~~~~~~~~e~~lk~---~p~~--~--~~~ll~sLg~l~~~~~~~~~A~~~le~ 360 (409)
T TIGR00540 289 GLKKLGDDRAISLPLCL-PIPRLKPEDNEKLEKLIEKQAKN---VDDK--P--KCCINRALGQLLMKHGEFIEAADAFKN 360 (409)
T ss_pred HHhhCCCcccchhHHHH-HhhhcCCCChHHHHHHHHHHHHh---CCCC--h--hHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 99876655433222221 23344445555555555544332 2222 1 346788999999999999999999996
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChh
Q 004943 556 GLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIP 608 (722)
Q Consensus 556 AL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~ 608 (722)
+..... .-+ .. ....||.++...|+.++|.++++.|+..+-.++|.+
T Consensus 361 a~a~~~--~p~-~~---~~~~La~ll~~~g~~~~A~~~~~~~l~~~~~~~~~~ 407 (409)
T TIGR00540 361 VAACKE--QLD-AN---DLAMAADAFDQAGDKAEAAAMRQDSLGLMLAIQDNI 407 (409)
T ss_pred hHHhhc--CCC-HH---HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccC
Confidence 555521 222 11 233889999999999999999999999998888754
No 55
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=98.35 E-value=0.015 Score=68.77 Aligned_cols=460 Identities=13% Similarity=0.035 Sum_probs=257.2
Q ss_pred ChHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhhhhhhHHHHHHHHHcCCCchHHHHHHHHHHHhhh
Q 004943 39 LPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSS 118 (722)
Q Consensus 39 ~p~~EA~~rLrla~iL~e~T~N~~~A~thLeka~~l~~~~~~~~dlk~~~~~lLa~~y~~~~~~~~~k~~l~k~i~~~~~ 118 (722)
+.-++.|-+.++--+-+-+-.|...|+.+|.+.+..++.. ...-..+.-..+-+..+...+....+...+.++.+.+.+
T Consensus 93 ~~~~d~k~~~~~ll~~i~~~~~~~~a~~~l~~~I~~~~~~-~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~ 171 (608)
T PF10345_consen 93 HRLTDLKFRCQFLLARIYFKTNPKAALKNLDKAIEDSETY-GHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQ 171 (608)
T ss_pred cchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc-CchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhh
Confidence 5566666666655555556667667999999998888752 111122222222233343344456677778888877653
Q ss_pred hhcccccchhHHHHhhHHHhHhhhcCChHHHHHHHHhHHHHHhhc------CChhHHHHHHHHHHHHHhcccCChhHHHH
Q 004943 119 ASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEI------SYPDLQMFFATAILHVHLMQWDDENSVLR 192 (722)
Q Consensus 119 ~~~~~~~~~W~~~f~f~la~~~~~~~d~~~A~~~L~~g~~~A~~~------~~~~~~v~f~l~~~~~~L~~~~~~~~v~~ 192 (722)
-.......-|.+..+.+|...+....+++.++.....++.. .-|++.+++.+.+....+.. .+++.+.+
T Consensus 172 ----~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~-~~~~~~~~ 246 (608)
T PF10345_consen 172 ----RGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQ-GDVKNSKQ 246 (608)
T ss_pred ----cCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 11345555666667778888888888999999877777654 55899999999999988886 78888999
Q ss_pred HHHhhhHHhhhcCccccccccc----------------------hhh-h--hhHH-HHHHHhhhhhhhhhhhhhhhHHHH
Q 004943 193 SINQCDRVWESIDPNRRGQCLG----------------------LLF-Y--NELL-HIFYRLRICDYKNAAHHVDNLDAA 246 (722)
Q Consensus 193 ~l~~~~~~~~~i~~~~~~~~~g----------------------~~~-~--~e~l-~i~~~l~ic~~~~~~~~v~~~~~~ 246 (722)
-++...+.++++.... .|.. ..| + ++.+ -.+|++=+-+
T Consensus 247 ~L~~lq~~~~~~~~~~--~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~-------------- 310 (608)
T PF10345_consen 247 KLKQLQQFLDEIKKSP--SWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLH-------------- 310 (608)
T ss_pred HHHHHHHHHHHhhcCc--cCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHH--------------
Confidence 9988888888764432 1111 111 1 2222 2222211101
Q ss_pred HHHhHHHHHHHHHHhhhhHHhhhhcCCCCCChhhhHHHHHHHHHHHHHHHhcccCcCcccccCCccccCCCccccCcccc
Q 004943 247 MKADKQKMQEIQQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNARQAWGDKLV 326 (722)
Q Consensus 247 ~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~lq~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~ 326 (722)
+++.+..+ +...-+..=+++++..+.. +.-....|+..
T Consensus 311 -----------------------~~~~~~~~-ks~k~~~k~l~~i~~~~~~---~~~~~~~sl~~--------------- 348 (608)
T PF10345_consen 311 -----------------------NLYKGSMD-KSEKFLEKALKQIEKLKIK---SPSAPSESLSE--------------- 348 (608)
T ss_pred -----------------------HhhccCch-HHHHHHHHHHHHHHHhhcc---CCCCCCcCHHH---------------
Confidence 11111110 1111111111222222200 00000000000
Q ss_pred cCCCCCcccccCcchhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHH
Q 004943 327 LAPSPMDGEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLML 406 (722)
Q Consensus 327 ~~~~~~~~~WLpk~~l~aLvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l 406 (722)
..-...|+ ..+...+.+..+++....|++.++.+..+..-.. ..+.+.... ...
T Consensus 349 ---~~~~~~~~--~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~----~~~~~~~~~-------------~~~---- 402 (608)
T PF10345_consen 349 ---ASERIQWL--RYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQL----CQRSPSKLY-------------ESL---- 402 (608)
T ss_pred ---HHHhHHHH--HHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH----HhcCccchh-------------hhh----
Confidence 00114676 3445555666688888999999999988888877 444443110 011
Q ss_pred HHHHHHhhHHHHHhhCCHHHHHHHHHHHHHHH----HhC-CchhhhhHHHHHHHHHHHHHHhCCHH--H--HHHHHHHHH
Q 004943 407 LMQFLENKVAVELTRSGFVEAQEALVQMKNWF----IRF-PTILQACESMIEMLRGQYAHSVGCYS--E--AAFHYVEAA 477 (722)
Q Consensus 407 ~a~lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~----~~~-~d~~~~~~a~i~~llG~~~~alG~~~--~--Al~~f~~AL 477 (722)
...++.-.|..+...|+.+.|...|.+.+-.. .+. ++.. ..-++.-++-.+....+.-. + +...+.+--
T Consensus 403 ~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~E--l~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~ 480 (608)
T PF10345_consen 403 YPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRE--LYILAALNLAIILQYESSRDDSESELNELLEQIE 480 (608)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchH--HHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcC
Confidence 22233336888999999999999998555322 121 2211 12233333444444444322 2 444443221
Q ss_pred Hhhcchh----HHHHHHHHHHHHHHhcCChhH----HHHHHHHh-cchhcccccccChHHHHHHHHHHHHHHHhcCCHHH
Q 004943 478 KITESKS----MQAMCHAYAAVSYFCIGDAES----SSQAIDLI-GPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQE 548 (722)
Q Consensus 478 ~l~~~~~----~~A~allnla~v~l~~G~~e~----a~~aL~l~-~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~e 548 (722)
....+.. ..+.+.+..+......-...+ ..++|... ... ++ ..--+.+++.+|...+ .|+..|
T Consensus 481 p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~----~n---~~l~~~~L~lm~~~lf-~~~~~e 552 (608)
T PF10345_consen 481 PLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKL----GN---SQLLAILLNLMGHRLF-EGDVGE 552 (608)
T ss_pred ccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhh----cc---chHHHHHHHHHHHHHH-cCCHHH
Confidence 2222221 444444422222111111112 55666655 222 21 2225667888888877 899999
Q ss_pred HHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 004943 549 ARNRLAKGLQIAHNHM---GNLQLVSQYLTILGNLALALHDTVQAREILRSSLT 599 (722)
Q Consensus 549 Ak~~L~qAL~la~~~~---gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~ 599 (722)
.......|.++|++ . ++.-.+..+-..+...+...|+.++|....+..-.
T Consensus 553 ~~~~s~~a~~~A~k-~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 553 QAKKSARAFQLAKK-SSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 99999999999885 6 66555555666788889999999999887666543
No 56
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=0.00044 Score=76.85 Aligned_cols=240 Identities=17% Similarity=0.130 Sum_probs=176.7
Q ss_pred HHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCC
Q 004943 344 ALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSG 423 (722)
Q Consensus 344 aLvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~ 423 (722)
+..-+++++|...+|+.-.|..-+.+++.+ ..+ .. .+| -.++.++.-+.+
T Consensus 326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l----~~~----~~--------------~ly--------I~~a~~y~d~~~ 375 (606)
T KOG0547|consen 326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKL----DPA----FN--------------SLY--------IKRAAAYADENQ 375 (606)
T ss_pred HHHHHHhhhhhhhcCCchhhhhhHHHHHhc----Ccc----cc--------------hHH--------HHHHHHHhhhhc
Confidence 666678899999999998888888888777 111 11 112 236788888889
Q ss_pred HHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCCh
Q 004943 424 FVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDA 503 (722)
Q Consensus 424 ~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~ 503 (722)
..+-.+.|..|.++--+.||. ++.+|++..-+++|++|.+-|++|..+..+ -+++...++....+++..
T Consensus 376 ~~~~~~~F~~A~~ldp~n~dv--------YyHRgQm~flL~q~e~A~aDF~Kai~L~pe---~~~~~iQl~~a~Yr~~k~ 444 (606)
T KOG0547|consen 376 SEKMWKDFNKAEDLDPENPDV--------YYHRGQMRFLLQQYEEAIADFQKAISLDPE---NAYAYIQLCCALYRQHKI 444 (606)
T ss_pred cHHHHHHHHHHHhcCCCCCch--------hHhHHHHHHHHHHHHHHHHHHHHHhhcChh---hhHHHHHHHHHHHHHHHH
Confidence 999999999999988888887 788899999999999999999988876443 345555566666676665
Q ss_pred hHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc----CChHHHHHHHHHHHH
Q 004943 504 ESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHM----GNLQLVSQYLTILGN 579 (722)
Q Consensus 504 e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~----gd~~l~a~~L~~LG~ 579 (722)
+++...++-+..-+-.+ . + ++.-.|.+..-+++++.|...|-.|.++...+. |-..++..++..+-|
T Consensus 445 ~~~m~~Fee~kkkFP~~-----~--E--vy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qw 515 (606)
T KOG0547|consen 445 AESMKTFEEAKKKFPNC-----P--E--VYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQW 515 (606)
T ss_pred HHHHHHHHHHHHhCCCC-----c--h--HHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhch
Confidence 55544444333222211 1 3 444567888899999999999999999955322 445566666666655
Q ss_pred HHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHHHHHH
Q 004943 580 LALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDE 643 (722)
Q Consensus 580 ~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~ 643 (722)
. +|..+|++.++.|..+ |+.- -.+...|+.+-..+|+.++|.+.|+......+.
T Consensus 516 k----~d~~~a~~Ll~KA~e~-----Dpkc-e~A~~tlaq~~lQ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 516 K----EDINQAENLLRKAIEL-----DPKC-EQAYETLAQFELQRGKIDEAIELFEKSAQLART 569 (606)
T ss_pred h----hhHHHHHHHHHHHHcc-----CchH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 4 8999999999998875 3322 347788999999999999999999988776665
No 57
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.30 E-value=0.001 Score=77.47 Aligned_cols=376 Identities=14% Similarity=0.085 Sum_probs=226.4
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhhhhhhHHHHHHHHHcCCC----chHHHHHHHHHHHhhhhhcc
Q 004943 47 RLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAI----PPQKLILYKALDLTSSASQD 122 (722)
Q Consensus 47 rLrla~iL~e~T~N~~~A~thLeka~~l~~~~~~~~dlk~~~~~lLa~~y~~~~~~----~~~k~~l~k~i~~~~~~~~~ 122 (722)
-|=.+++.++.-.++.++...=.|++.++. .-+.++|=..+.++.=+|..+-.- -.-+....|+|+.-..+.+-
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~--~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~ 473 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLG--GQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF 473 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhh--hhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc
Confidence 345678889999999999999999998874 356788888888888888765422 11122445666555544333
Q ss_pred cccchhHHHHhhHHHhHhhhcCChHHHHHHHHhHHHHHhhcCChhHHHHHHHHHHHHHhcccCChhHHHHHHHhhhHHhh
Q 004943 123 VAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWE 202 (722)
Q Consensus 123 ~~~~~W~~~f~f~la~~~~~~~d~~~A~~~L~~g~~~A~~~~~~~~~v~f~l~~~~~~L~~~~~~~~v~~~l~~~~~~~~ 202 (722)
.++.+ .-.|-+|--++..++..+|.+.++...++.....-+....++.+.-+.-++.+ ..+-|+.+++..+
T Consensus 474 d~~dp---~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~--Al~vvd~al~E~~---- 544 (799)
T KOG4162|consen 474 DPTDP---LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKE--ALDVVDAALEEFG---- 544 (799)
T ss_pred CCCCc---hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHH--HHHHHHHHHHHhh----
Confidence 33333 55666787888899999999999997777666666777777777777766643 2233333332221
Q ss_pred hcCccccccccchhhhhhHHHHHHHhhhhhhhhhhhhhhhHHHHHHHhHHHHHHHHHHhhhhHHhhhhcCCCCCChhhhH
Q 004943 203 SIDPNRRGQCLGLLFYNELLHIFYRLRICDYKNAAHHVDNLDAAMKADKQKMQEIQQLSSELDALNQSLSRPDLPSRERS 282 (722)
Q Consensus 203 ~i~~~~~~~~~g~~~~~e~l~i~~~l~ic~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~ 282 (722)
++++ ++..+|=- -+..+++=+.||+|. +++...+ .+
T Consensus 545 -------~N~~-----l~~~~~~i------~~~~~~~e~~l~t~~----~~L~~we-------------~~--------- 580 (799)
T KOG4162|consen 545 -------DNHV-----LMDGKIHI------ELTFNDREEALDTCI----HKLALWE-------------AE--------- 580 (799)
T ss_pred -------hhhh-----hchhhhhh------hhhcccHHHHHHHHH----HHHHHHH-------------hh---------
Confidence 0121 12221111 123555566788886 3333222 01
Q ss_pred HHHHHHHHHHHHHHhcccCcCcccccCCccccCCCccccCcccccCCCCCcccccCcchhHHHHHHHHHHhhccCCChHH
Q 004943 283 ALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNARQAWGDKLVLAPSPMDGEWLPKSAVYALVDLMVVILGRPKGLFKE 362 (722)
Q Consensus 283 ~~~~~~~~lq~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~WLpk~~l~aLvylls~~~~~~kg~~~k 362 (722)
.-.|+.+.+ .++...+ +++ ....++..+
T Consensus 581 ------~~~q~~~~~---------g~~~~lk------------------------------------~~l-~la~~q~~~ 608 (799)
T KOG4162|consen 581 ------YGVQQTLDE---------GKLLRLK------------------------------------AGL-HLALSQPTD 608 (799)
T ss_pred ------hhHhhhhhh---------hhhhhhh------------------------------------ccc-ccCcccccc
Confidence 112222211 0000000 000 111112234
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcccchh--hhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHHHHHHHHHHHHHh
Q 004943 363 CMQRIQSGMQTIQDALLKLGITDGVREVDL--QHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNWFIR 440 (722)
Q Consensus 363 A~k~~~~AL~~i~~~~~~lg~~~g~~e~~l--~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~ 440 (722)
+.+........+....+..|.....+.... .....|.... .+--..+......+..++|.-++.++-.++.
T Consensus 609 a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~------~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~- 681 (799)
T KOG4162|consen 609 AISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQ------KLWLLAADLFLLSGNDDEARSCLLEASKIDP- 681 (799)
T ss_pred cchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHH------HHHHHHHHHHHhcCCchHHHHHHHHHHhcch-
Confidence 444555555554433333343222222221 1133452221 1112346677778888999999999998873
Q ss_pred CCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhH------HHHHHHHhc
Q 004943 441 FPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES------SSQAIDLIG 514 (722)
Q Consensus 441 ~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~------a~~aL~l~~ 514 (722)
..+.+++..|..+...|..++|...|..|+.+-.+.. .+...+|.+++..|++.- ++.++. +.
T Consensus 682 -------l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv---~s~~Ala~~lle~G~~~la~~~~~L~dalr-~d 750 (799)
T KOG4162|consen 682 -------LSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHV---PSMTALAELLLELGSPRLAEKRSLLSDALR-LD 750 (799)
T ss_pred -------hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHhCCcchHHHHHHHHHHHh-hC
Confidence 3567799999999999999999999999887765543 344556888889897542 233332 23
Q ss_pred chhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 004943 515 PVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQI 559 (722)
Q Consensus 515 ~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~l 559 (722)
|. ++ .+++.+|.+...+|+..+|..+|+-|+++
T Consensus 751 p~------n~------eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 751 PL------NH------EAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred CC------CH------HHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 32 11 47999999999999999999999999999
No 58
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.29 E-value=2.7e-05 Score=92.59 Aligned_cols=162 Identities=10% Similarity=0.020 Sum_probs=129.7
Q ss_pred HHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 004943 416 AVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAV 495 (722)
Q Consensus 416 ~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~ 495 (722)
.+--..|+...+.+.+-+++++.+++|+. +-+++++|.+.+..|++++|++++..++.+..+. +.+..+.|.
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~---~~a~~~~a~ 128 (694)
T PRK15179 57 QVLERHAAVHKPAAALPELLDYVRRYPHT-----ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS---SEAFILMLR 128 (694)
T ss_pred HHHHHhhhhcchHhhHHHHHHHHHhcccc-----HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc---HHHHHHHHH
Confidence 34445566777888888999999999985 3569999999999999999999999888776553 556677888
Q ss_pred HHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 004943 496 SYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLT 575 (722)
Q Consensus 496 v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~ 575 (722)
+..+.+.++++....+.+.+. .. ..+.+++.+|.+....|++++|...|++++.- + ...+.+++
T Consensus 129 ~L~~~~~~eeA~~~~~~~l~~---~p------~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~-~------p~~~~~~~ 192 (694)
T PRK15179 129 GVKRQQGIEAGRAEIELYFSG---GS------SSAREILLEAKSWDEIGQSEQADACFERLSRQ-H------PEFENGYV 192 (694)
T ss_pred HHHHhccHHHHHHHHHHHhhc---CC------CCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc-C------CCcHHHHH
Confidence 888888887755555544443 11 14578889999999999999999999999872 1 23457899
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHHH
Q 004943 576 ILGNLALALHDTVQAREILRSSLTLA 601 (722)
Q Consensus 576 ~LG~~~~a~g~~~qA~~~l~~Al~lA 601 (722)
.+|..+...|+.++|...+++|++.+
T Consensus 193 ~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 193 GWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999998865
No 59
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=0.014 Score=65.26 Aligned_cols=486 Identities=16% Similarity=0.123 Sum_probs=266.8
Q ss_pred hhhhHHHHHHHHHcCCCchHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHhHhhhc-CChHHHHHHHHhHHHHHhhcC
Q 004943 86 CRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIE-GDYQSSISALQSGYVCATEIS 164 (722)
Q Consensus 86 ~~~~~lLa~~y~~~~~~~~~k~~l~k~i~~~~~~~~~~~~~~W~~~f~f~la~~~~~~-~d~~~A~~~L~~g~~~A~~~~ 164 (722)
+.+.-.+|+-+...+|+. ++|+|.=.+.-+.--+...-.-+=++|++.++... ..++-|-+.|++...+-...+
T Consensus 7 a~aLlGlAe~~rt~~PPk-----Ikk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip 81 (629)
T KOG2300|consen 7 AEALLGLAEHFRTSGPPK-----IKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIP 81 (629)
T ss_pred HHHHHHHHHHHhhcCChh-----HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccc
Confidence 344556888777777665 44666444432222233334445567788876665 567889999999998888777
Q ss_pred C---hhHHHHHHHHHHHHHhcccCChhHHHHHHHhhhHHhhhcCccccccccc-hhhhhhHHHHHH--Hhhhhhhhhhhh
Q 004943 165 Y---PDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWESIDPNRRGQCLG-LLFYNELLHIFY--RLRICDYKNAAH 238 (722)
Q Consensus 165 ~---~~~~v~f~l~~~~~~L~~~~~~~~v~~~l~~~~~~~~~i~~~~~~~~~g-~~~~~e~l~i~~--~l~ic~~~~~~~ 238 (722)
. .+++....|+.++.++.+ +++.....+.++.++-..-| -|.. +.|+--.+++.. +--.|+.+..|.
T Consensus 82 ~fydvKf~a~SlLa~lh~~~~~--s~~~~KalLrkaielsq~~p-----~wsckllfQLaql~~idkD~~sA~elLavga 154 (629)
T KOG2300|consen 82 SFYDVKFQAASLLAHLHHQLAQ--SFPPAKALLRKAIELSQSVP-----YWSCKLLFQLAQLHIIDKDFPSALELLAVGA 154 (629)
T ss_pred cHHhhhhHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCCc-----hhhHHHHHHHHHHHhhhccchhHHHHHhccc
Confidence 5 577888888998888875 67778878877766654211 1111 011112222222 122233333331
Q ss_pred hhhhHHHHHHHhHHHHHHHHHHhhhhHHhhhhcCCCCCChhhhHHHHHHHHHHHH--HHHhcccCcCcccccCCccccCC
Q 004943 239 HVDNLDAAMKADKQKMQEIQQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQ--RLRSLEDSSLTGKEFLEPSYFGN 316 (722)
Q Consensus 239 ~v~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~lq~--~l~~~~~~~~~~~~~l~~~~~~~ 316 (722)
+..|+.|+ +-.+.++. |.++.-.+-++|. .+.. +-++. +|++ ++.
T Consensus 155 --~sAd~~~~------~ylr~~ft-ls~~~ll~me~d~--~dV~------~ll~~~~qi~~----n~~------------ 201 (629)
T KOG2300|consen 155 --ESADHICF------PYLRMLFT-LSMLMLLIMERDD--YDVE------KLLQRCGQIWQ----NIS------------ 201 (629)
T ss_pred --cccchhhh------HHHHHHHH-HHHHHHHHhCccH--HHHH------HHHHHHHHHHh----ccC------------
Confidence 33344442 11222221 1222223333321 1111 12222 2211 011
Q ss_pred CccccCcccccCCCCCcccccCcchhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCC-CCcccchh-hh
Q 004943 317 ARQAWGDKLVLAPSPMDGEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGIT-DGVREVDL-QH 394 (722)
Q Consensus 317 ~~~~~~d~~~~~~~~~~~~WLpk~~l~aLvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~-~g~~e~~l-~~ 394 (722)
+| +.+ ++-+-++.-.+.+.++..-|+..-+. -+++.+++......-. .+-.|.-+ .+
T Consensus 202 -----sd-------k~~-----~E~LkvFyl~lql~yy~~~gq~rt~k----~~lkQLQ~siqtist~~~~h~e~ilgsp 260 (629)
T KOG2300|consen 202 -----SD-------KTQ-----KEMLKVFYLVLQLSYYLLPGQVRTVK----PALKQLQDSIQTISTSSRGHDEKILGSP 260 (629)
T ss_pred -----CC-------hHH-----HHHHHHHHHHHHHHHHhcccchhhhH----HHHHHHHHHHhccCCCCCCccccccCCC
Confidence 11 122 23333333334466666667654333 3344444432222110 11112221 11
Q ss_pred h---HHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCch------hhhhHHHHHHHHHHHHHHhCC
Q 004943 395 S---AIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTI------LQACESMIEMLRGQYAHSVGC 465 (722)
Q Consensus 395 ~---~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~------~~~~~a~i~~llG~~~~alG~ 465 (722)
+ -.|.-. -.+-+++.-+.+.--...|=+++|.++-.+++...++.+.. +....-..+-.+-.+..-+|+
T Consensus 261 s~~l~~wlpk--eqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~ 338 (629)
T KOG2300|consen 261 SPILFEWLPK--EQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGD 338 (629)
T ss_pred ChHHHhhccH--hhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 1 123211 00112222222333356788999999999999988887542 222333455667778888899
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcC-------ChhH----HHHHHHHhcchhcccccccChHHHHHHHH
Q 004943 466 YSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIG-------DAES----SSQAIDLIGPVYQMKDTINGVREEASLHF 534 (722)
Q Consensus 466 ~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G-------~~e~----a~~aL~l~~~l~r~~~~~~~~~~~A~al~ 534 (722)
+.+|++-.......+...++.-+.....+.+|.-.| .++. +..|+.+... .++ +|.+..
T Consensus 339 ~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~--------~dl--~a~~nl 408 (629)
T KOG2300|consen 339 YVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTES--------IDL--QAFCNL 408 (629)
T ss_pred HHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhH--------HHH--HHHHHH
Confidence 999988776665554433332222222233333333 3443 3333332211 223 888999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHH----hcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHH
Q 004943 535 AYGLLLMRQQDFQEARNRLAKGLQIAHN----HMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQ 610 (722)
Q Consensus 535 ~lG~~~~~~G~~~eAk~~L~qAL~la~~----~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q 610 (722)
+++.+|.++|+-+.- -++|+.-.. ......+.+.++..=|-..+.+++..||...+++.+.+++.-+--..-
T Consensus 409 nlAi~YL~~~~~ed~----y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~ 484 (629)
T KOG2300|consen 409 NLAISYLRIGDAEDL----YKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLT 484 (629)
T ss_pred hHHHHHHHhccHHHH----HHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHH
Confidence 999999998876543 344443221 123357788888888888999999999999999999999666655556
Q ss_pred HHHHHHHHHHHHHcCCchhHhHHHHHHHHHHHHHhHHHHHhhh
Q 004943 611 IWALSVLTALYQQLGDRGNEMENDEYRRKKLDELQKRLADAYS 653 (722)
Q Consensus 611 ~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~l~~~~~~a~~ 653 (722)
...+++|+.+....|+..++++--.-.+..+..+..-+.+=.+
T Consensus 485 a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws 527 (629)
T KOG2300|consen 485 ACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWS 527 (629)
T ss_pred HHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHH
Confidence 7788999999999999999877666666666555544444443
No 60
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.25 E-value=6.7e-05 Score=71.80 Aligned_cols=125 Identities=18% Similarity=0.208 Sum_probs=100.6
Q ss_pred HHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 004943 418 ELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSY 497 (722)
Q Consensus 418 ~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~ 497 (722)
....++++.+.+.+++.. ..+|+. .........+|..+...|++++|...|+.++....+.....++.+++|.++
T Consensus 21 ~~~~~~~~~~~~~~~~l~---~~~~~s--~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~ 95 (145)
T PF09976_consen 21 ALQAGDPAKAEAAAEQLA---KDYPSS--PYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARIL 95 (145)
T ss_pred HHHCCCHHHHHHHHHHHH---HHCCCC--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence 336889988866555444 456765 345677888999999999999999999999988877888999999999999
Q ss_pred HhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004943 498 FCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGL 557 (722)
Q Consensus 498 l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL 557 (722)
+..|+++++...|+.+.+ ... .+.+....|.++...|++++|+..|++||
T Consensus 96 ~~~~~~d~Al~~L~~~~~--------~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 96 LQQGQYDEALATLQQIPD--------EAF--KALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHcCCHHHHHHHHHhccC--------cch--HHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 999999887777754321 112 55678889999999999999999999985
No 61
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.22 E-value=0.00017 Score=80.84 Aligned_cols=200 Identities=12% Similarity=0.082 Sum_probs=135.5
Q ss_pred HHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHH
Q 004943 349 MVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQ 428 (722)
Q Consensus 349 ls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~ 428 (722)
.-+......|++++|.+++++.++. . +. ...++..++.++...|+|++|.
T Consensus 158 ~~a~l~l~~g~~~~Al~~l~~~~~~---------~-P~--------------------~~~al~ll~~~~~~~gdw~~a~ 207 (398)
T PRK10747 158 TRVRIQLARNENHAARHGVDKLLEV---------A-PR--------------------HPEVLRLAEQAYIRTGAWSSLL 207 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc---------C-CC--------------------CHHHHHHHHHHHHHHHhHHHHH
Confidence 3367778889999999988887666 1 21 1122344678888889999999
Q ss_pred HHHHHHHHH-----------------------------------HHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHH
Q 004943 429 EALVQMKNW-----------------------------------FIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHY 473 (722)
Q Consensus 429 ~~l~~Al~l-----------------------------------~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f 473 (722)
+.+.+.... .+..|+.. ...+-+....+......|++++|....
T Consensus 208 ~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L 286 (398)
T PRK10747 208 DILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQII 286 (398)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 666655531 11222211 123456777889999999999999999
Q ss_pred HHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 004943 474 VEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRL 553 (722)
Q Consensus 474 ~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L 553 (722)
.++++...+. ..+ +...++..|+++...+.+ ......+++ -+..++.+|.++..+|++.+|+.+|
T Consensus 287 ~~~l~~~~~~---~l~---~l~~~l~~~~~~~al~~~---e~~lk~~P~------~~~l~l~lgrl~~~~~~~~~A~~~l 351 (398)
T PRK10747 287 LDGLKRQYDE---RLV---LLIPRLKTNNPEQLEKVL---RQQIKQHGD------TPLLWSTLGQLLMKHGEWQEASLAF 351 (398)
T ss_pred HHHHhcCCCH---HHH---HHHhhccCCChHHHHHHH---HHHHhhCCC------CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9998843333 111 011223335555443333 333333332 2356888999999999999999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Q 004943 554 AKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAK 602 (722)
Q Consensus 554 ~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAk 602 (722)
+++++.. . .. .....|+.++...|++++|.+++++++.++.
T Consensus 352 e~al~~~-----P-~~--~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~ 392 (398)
T PRK10747 352 RAALKQR-----P-DA--YDYAWLADALDRLHKPEEAAAMRRDGLMLTL 392 (398)
T ss_pred HHHHhcC-----C-CH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 9999872 1 11 2345799999999999999999999998764
No 62
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.21 E-value=0.0082 Score=72.11 Aligned_cols=144 Identities=9% Similarity=0.069 Sum_probs=78.3
Q ss_pred HhHHHHHhhccHhHHhHHHHHHhccCCCCChHHHHHHHHHHHHHH--HhhcCChHHHHHHHHHHHHHHhcCCcchhhhhh
Q 004943 10 GLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLL--LKHTHNVNHAKSHLERSQLLLKAIPSCFELKCR 87 (722)
Q Consensus 10 ~lAe~~~~~~~i~~ai~CLeA~l~~~~~l~p~~EA~~rLrla~iL--~e~T~N~~~A~thLeka~~l~~~~~~~~dlk~~ 87 (722)
.+-+.+...+.+..|+..++......+ +.|...+ |..+| +-...+...|+..+..... . ++.- -..
T Consensus 92 ~~i~~l~~~g~~~~Al~~f~~m~~~~~-~~~~~~t-----~~~ll~a~~~~~~~~~a~~l~~~m~~----~-g~~~-~~~ 159 (697)
T PLN03081 92 SQIEKLVACGRHREALELFEILEAGCP-FTLPAST-----YDALVEACIALKSIRCVKAVYWHVES----S-GFEP-DQY 159 (697)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCC-CCCCHHH-----HHHHHHHHHhCCCHHHHHHHHHHHHH----h-CCCc-chH
Confidence 344556667788888888888765432 3333322 22222 2234677778777765422 1 2221 123
Q ss_pred hhHHHHHHHHHcCCCchHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHhHhhhcCChHHHHHHHHhHHHHHhhcCChh
Q 004943 88 TFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPD 167 (722)
Q Consensus 88 ~~~lLa~~y~~~~~~~~~k~~l~k~i~~~~~~~~~~~~~~W~~~f~f~la~~~~~~~d~~~A~~~L~~g~~~A~~~~~~~ 167 (722)
....|..+|.+.|....+..+.. .... .....| +. +...+...|++..|++.++.... .--.|.
T Consensus 160 ~~n~Li~~y~k~g~~~~A~~lf~----~m~~----~~~~t~--n~---li~~~~~~g~~~~A~~lf~~M~~---~g~~p~ 223 (697)
T PLN03081 160 MMNRVLLMHVKCGMLIDARRLFD----EMPE----RNLASW--GT---IIGGLVDAGNYREAFALFREMWE---DGSDAE 223 (697)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHh----cCCC----CCeeeH--HH---HHHHHHHCcCHHHHHHHHHHHHH---hCCCCC
Confidence 44556789999887654443332 2221 112233 22 35566778999999988887542 222344
Q ss_pred HHHHHHHHHHHHHh
Q 004943 168 LQMFFATAILHVHL 181 (722)
Q Consensus 168 ~~v~f~l~~~~~~L 181 (722)
...+..++.+...+
T Consensus 224 ~~t~~~ll~a~~~~ 237 (697)
T PLN03081 224 PRTFVVMLRASAGL 237 (697)
T ss_pred hhhHHHHHHHHhcC
Confidence 55555555555444
No 63
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.20 E-value=2.5e-05 Score=76.51 Aligned_cols=117 Identities=15% Similarity=0.053 Sum_probs=89.0
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChH
Q 004943 448 CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVR 527 (722)
Q Consensus 448 ~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~ 527 (722)
..+..++.+|.++...|++++|+..|..++.+..+....+.++.|+|.+|...|+++++...++.+..+..... ....
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~--~~~~ 110 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLP--QALN 110 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH--HHHH
Confidence 46788999999999999999999999999988766556677899999999999999886666665554422111 1122
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 004943 528 EEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGN 566 (722)
Q Consensus 528 ~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd 566 (722)
..+.++..+|..+...|++.+|...+.+|+....+..+.
T Consensus 111 ~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~ 149 (168)
T CHL00033 111 NMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIAL 149 (168)
T ss_pred HHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHh
Confidence 345566666666669999999999999998886654443
No 64
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=0.00011 Score=81.14 Aligned_cols=203 Identities=13% Similarity=0.108 Sum_probs=149.3
Q ss_pred hHHHHHhhCCHHHHHHHHHHHHHH-HHhCCchh---------------h----------hhHHHHHHHHHHHHHHhCCHH
Q 004943 414 KVAVELTRSGFVEAQEALVQMKNW-FIRFPTIL---------------Q----------ACESMIEMLRGQYAHSVGCYS 467 (722)
Q Consensus 414 Lg~~~l~~g~~~eA~~~l~~Al~l-~~~~~d~~---------------~----------~~~a~i~~llG~~~~alG~~~ 467 (722)
.|.+...+-|+|+|+..|++.+.- --+++|+- . ...+-....+|-|+--.+.++
T Consensus 268 ~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHE 347 (559)
T KOG1155|consen 268 IAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHE 347 (559)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHH
Confidence 588999999999999999987762 01112210 0 011112235688899999999
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHH
Q 004943 468 EAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQ 547 (722)
Q Consensus 468 ~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~ 547 (722)
.|..+|+.||++-... ..++.-+|.=|..+.+.+.+-++...+-.++. .|+ -+++.+|.+|--.+-+.
T Consensus 348 KAv~YFkRALkLNp~~---~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p--~Dy-------RAWYGLGQaYeim~Mh~ 415 (559)
T KOG1155|consen 348 KAVMYFKRALKLNPKY---LSAWTLMGHEYVEMKNTHAAIESYRRAVDINP--RDY-------RAWYGLGQAYEIMKMHF 415 (559)
T ss_pred HHHHHHHHHHhcCcch---hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCc--hhH-------HHHhhhhHHHHHhcchH
Confidence 9999999999886553 33344456666666565544455544444422 111 37999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCc
Q 004943 548 EARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDR 627 (722)
Q Consensus 548 eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~ 627 (722)
=|.=++++|++. + --| ...++.||..|-..++.++|.++++.|...-.. ..-++.-||.+|...+|.
T Consensus 416 YaLyYfqkA~~~-k--PnD----sRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt------e~~~l~~LakLye~l~d~ 482 (559)
T KOG1155|consen 416 YALYYFQKALEL-K--PND----SRLWVALGECYEKLNRLEEAIKCYKRAILLGDT------EGSALVRLAKLYEELKDL 482 (559)
T ss_pred HHHHHHHHHHhc-C--CCc----hHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc------chHHHHHHHHHHHHHHhH
Confidence 999999999998 3 233 357889999999999999999999999875443 345888999999999999
Q ss_pred hhHhHHHHHHHHHH
Q 004943 628 GNEMENDEYRRKKL 641 (722)
Q Consensus 628 ~~A~e~~~~~~~~~ 641 (722)
.+|..+|+......
T Consensus 483 ~eAa~~yek~v~~~ 496 (559)
T KOG1155|consen 483 NEAAQYYEKYVEVS 496 (559)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999888865
No 65
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=0.00014 Score=80.21 Aligned_cols=198 Identities=12% Similarity=-0.010 Sum_probs=150.3
Q ss_pred HHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHHHH
Q 004943 351 VILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEA 430 (722)
Q Consensus 351 ~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~~ 430 (722)
+-.+..++..+||..|+++||++ ++.. ...| .-+|-=+..+.+-..|++.
T Consensus 337 aNYYSlr~eHEKAv~YFkRALkL---------Np~~--------~~aW-------------TLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 337 ANYYSLRSEHEKAVMYFKRALKL---------NPKY--------LSAW-------------TLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred hhHHHHHHhHHHHHHHHHHHHhc---------Ccch--------hHHH-------------HHhhHHHHHhcccHHHHHH
Confidence 44455667778999999999998 1111 2334 1258888888999999999
Q ss_pred HHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHH
Q 004943 431 LVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAI 510 (722)
Q Consensus 431 l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL 510 (722)
|++|++++.+. -.+.|.+|+.+..++.+.=|+-+|++|...-.... ..+..+|.+|-..++.+++..+.
T Consensus 387 YRrAvdi~p~D--------yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDs---Rlw~aLG~CY~kl~~~~eAiKCy 455 (559)
T KOG1155|consen 387 YRRAVDINPRD--------YRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDS---RLWVALGECYEKLNRLEEAIKCY 455 (559)
T ss_pred HHHHHhcCchh--------HHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCch---HHHHHHHHHHHHhccHHHHHHHH
Confidence 99999987541 25699999999999999999999999987543322 23455689999888888888877
Q ss_pred HHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHhCCChHH
Q 004943 511 DLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGN-LQLVSQYLTILGNLALALHDTVQ 589 (722)
Q Consensus 511 ~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd-~~l~a~~L~~LG~~~~a~g~~~q 589 (722)
..+-.. ++. +..++..+|.+|...++.++|..++.+.++... ..|. ..-+-.+...|+.-+...++.++
T Consensus 456 krai~~-------~dt--e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~-~eg~~~~~t~ka~~fLA~~f~k~~~~~~ 525 (559)
T KOG1155|consen 456 KRAILL-------GDT--EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSE-LEGEIDDETIKARLFLAEYFKKMKDFDE 525 (559)
T ss_pred HHHHhc-------ccc--chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-hhcccchHHHHHHHHHHHHHHhhcchHH
Confidence 765444 222 567899999999999999999999999999653 2333 12244566679999999999999
Q ss_pred HHHHHHHHHH
Q 004943 590 AREILRSSLT 599 (722)
Q Consensus 590 A~~~l~~Al~ 599 (722)
|..++...+.
T Consensus 526 As~Ya~~~~~ 535 (559)
T KOG1155|consen 526 ASYYATLVLK 535 (559)
T ss_pred HHHHHHHHhc
Confidence 9987665543
No 66
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.16 E-value=5.2e-06 Score=87.71 Aligned_cols=130 Identities=12% Similarity=-0.004 Sum_probs=112.9
Q ss_pred hhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 004943 413 NKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAY 492 (722)
Q Consensus 413 ~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~alln 492 (722)
.++.-|..-++++-|++.|++.+.+.-..|.+ .+++|.++++-+.+|-++.-|+.|+......+..+-++.|
T Consensus 329 cia~~yfY~~~PE~AlryYRRiLqmG~~speL--------f~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYN 400 (478)
T KOG1129|consen 329 CIAVGYFYDNNPEMALRYYRRILQMGAQSPEL--------FCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYN 400 (478)
T ss_pred eeeeccccCCChHHHHHHHHHHHHhcCCChHH--------HhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhc
Confidence 46778889999999999999999987776665 7899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 004943 493 AAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQI 559 (722)
Q Consensus 493 la~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~l 559 (722)
+|.+---.||...+.+++.+...- +. ..+.+++++|.+..+.|+..+|+.+|.-|-..
T Consensus 401 lg~vaV~iGD~nlA~rcfrlaL~~----d~-----~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 401 LGFVAVTIGDFNLAKRCFRLALTS----DA-----QHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred cceeEEeccchHHHHHHHHHHhcc----Cc-----chHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 999998999988888888776542 11 14578999999999999999999999877443
No 67
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.16 E-value=0.00058 Score=85.02 Aligned_cols=205 Identities=11% Similarity=-0.032 Sum_probs=103.4
Q ss_pred HHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHH
Q 004943 411 LENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCH 490 (722)
Q Consensus 411 Le~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~al 490 (722)
...++..++..|++++|.+.|.++.+.. -.||. .+++.+-..+...|++++|...|.+..........-...+
T Consensus 510 ynaLI~gy~k~G~~eeAl~lf~~M~~~G-v~PD~------vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTy 582 (1060)
T PLN03218 510 FGALIDGCARAGQVAKAFGAYGIMRSKN-VKPDR------VVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITV 582 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHcC-CCCCH------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHH
Confidence 3455666777777777777776665421 12332 2344444455556666666666654433211111112223
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcchhc-------------------------------ccccccChHHHHHHHHHHHHH
Q 004943 491 AYAAVSYFCIGDAESSSQAIDLIGPVYQ-------------------------------MKDTINGVREEASLHFAYGLL 539 (722)
Q Consensus 491 lnla~v~l~~G~~e~a~~aL~l~~~l~r-------------------------------~~~~~~~~~~~A~al~~lG~~ 539 (722)
+.+...|.+.|+.+.+.+.++......- ..+-..+ ..++..+...
T Consensus 583 naLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD----~~TynsLI~a 658 (1060)
T PLN03218 583 GALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD----EVFFSALVDV 658 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHH
Confidence 3333345555555444443333221100 0000011 2344555555
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 004943 540 LMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTA 619 (722)
Q Consensus 540 ~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~ 619 (722)
+.+.|++++|...+.+..+. |- .....+++.|...|...|+.++|.+.++.-... .-.+| ..+.+.|-.
T Consensus 659 ~~k~G~~eeA~~l~~eM~k~-----G~-~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~-g~~Pd----vvtyN~LI~ 727 (1060)
T PLN03218 659 AGHAGDLDKAFEILQDARKQ-----GI-KLGTVSYSSLMGACSNAKNWKKALELYEDIKSI-KLRPT----VSTMNALIT 727 (1060)
T ss_pred HHhCCCHHHHHHHHHHHHHc-----CC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCC----HHHHHHHHH
Confidence 56666666666666665432 21 122345666667777777777777766653221 11233 345666777
Q ss_pred HHHHcCCchhHhHHHHHH
Q 004943 620 LYQQLGDRGNEMENDEYR 637 (722)
Q Consensus 620 l~~~~Gd~~~A~e~~~~~ 637 (722)
.|...|+.++|.+.++.-
T Consensus 728 gy~k~G~~eeAlelf~eM 745 (1060)
T PLN03218 728 ALCEGNQLPKALEVLSEM 745 (1060)
T ss_pred HHHHCCCHHHHHHHHHHH
Confidence 777788888777776654
No 68
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.16 E-value=0.00011 Score=80.32 Aligned_cols=202 Identities=13% Similarity=0.094 Sum_probs=141.3
Q ss_pred HHHHHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHH
Q 004943 407 LMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQ 486 (722)
Q Consensus 407 ~a~lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~ 486 (722)
.+..+.|.|-+....|+++.|.+.|++|+.- |. .-..+++++|+.+.++|++++|+..|- ++..-...-
T Consensus 489 n~~a~~nkgn~~f~ngd~dka~~~ykeal~n-----da---sc~ealfniglt~e~~~~ldeald~f~---klh~il~nn 557 (840)
T KOG2003|consen 489 NAAALTNKGNIAFANGDLDKAAEFYKEALNN-----DA---SCTEALFNIGLTAEALGNLDEALDCFL---KLHAILLNN 557 (840)
T ss_pred CHHHhhcCCceeeecCcHHHHHHHHHHHHcC-----ch---HHHHHHHHhcccHHHhcCHHHHHHHHH---HHHHHHHhh
Confidence 4666788999999999999999999999872 21 123578999999999999999999995 333333334
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 004943 487 AMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGN 566 (722)
Q Consensus 487 A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd 566 (722)
+.+++.+|.+|-...++.++.+.+-.+..+.- .+. ..+--+|.+|-+.|+-.+|.+++-.+-+..- .|
T Consensus 558 ~evl~qianiye~led~aqaie~~~q~~slip-----~dp----~ilskl~dlydqegdksqafq~~ydsyryfp---~n 625 (840)
T KOG2003|consen 558 AEVLVQIANIYELLEDPAQAIELLMQANSLIP-----NDP----AILSKLADLYDQEGDKSQAFQCHYDSYRYFP---CN 625 (840)
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHhcccCC-----CCH----HHHHHHHHHhhcccchhhhhhhhhhcccccC---cc
Confidence 56677778888776676665555555544421 111 4677789999999999999988877655421 12
Q ss_pred hHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHHHH
Q 004943 567 LQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKL 641 (722)
Q Consensus 567 ~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~ 641 (722)
+ .+.--||.-|....-.+.|..+++.|--+ -+..-.|-+.. +-+++..|++++|.+.|....+++
T Consensus 626 --i--e~iewl~ayyidtqf~ekai~y~ekaali-----qp~~~kwqlmi-asc~rrsgnyqka~d~yk~~hrkf 690 (840)
T KOG2003|consen 626 --I--ETIEWLAAYYIDTQFSEKAINYFEKAALI-----QPNQSKWQLMI-ASCFRRSGNYQKAFDLYKDIHRKF 690 (840)
T ss_pred --h--HHHHHHHHHHHhhHHHHHHHHHHHHHHhc-----CccHHHHHHHH-HHHHHhcccHHHHHHHHHHHHHhC
Confidence 1 23445677777777788888888877543 23334555443 677888999999988776655554
No 69
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.14 E-value=0.0087 Score=69.97 Aligned_cols=206 Identities=18% Similarity=0.177 Sum_probs=136.1
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHhCCchhh-hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchh---------
Q 004943 415 VAVELTRSGFVEAQEALVQMKNWFIRFPTILQ-ACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS--------- 484 (722)
Q Consensus 415 g~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~-~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~--------- 484 (722)
+-+..+-+|..+|+......+++++..+..-+ ....-....-+-.....++..+|...+...+.+...+.
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~L 633 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKL 633 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccccc
Confidence 34445567777888888888887775332111 11223333334444444455555555544433222111
Q ss_pred --------------HHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHH
Q 004943 485 --------------MQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEAR 550 (722)
Q Consensus 485 --------------~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk 550 (722)
...-.+.-.|.++...|..+++.-++..+..++. .-+..++-.|..+..+|...||+
T Consensus 634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~---------l~~~~~~~~G~~~~~~~~~~EA~ 704 (799)
T KOG4162|consen 634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDP---------LSASVYYLRGLLLEVKGQLEEAK 704 (799)
T ss_pred CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcch---------hhHHHHHHhhHHHHHHHhhHHHH
Confidence 1223344557778887777777777766655532 13567888899999999999999
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHH--HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCch
Q 004943 551 NRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQARE--ILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRG 628 (722)
Q Consensus 551 ~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~--~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~ 628 (722)
..|-.||.+. .....+.+.||.++...|+..-|++ +++.|+.+=-.- -++| ..||.+++..||.+
T Consensus 705 ~af~~Al~ld-------P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n----~eaW--~~LG~v~k~~Gd~~ 771 (799)
T KOG4162|consen 705 EAFLVALALD-------PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLN----HEAW--YYLGEVFKKLGDSK 771 (799)
T ss_pred HHHHHHHhcC-------CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCC----HHHH--HHHHHHHHHccchH
Confidence 9999999881 2233578899999999998888888 888887653222 2344 78899999999999
Q ss_pred hHhHHHHHHHHHHH
Q 004943 629 NEMENDEYRRKKLD 642 (722)
Q Consensus 629 ~A~e~~~~~~~~~~ 642 (722)
+|.+.|+.+...-+
T Consensus 772 ~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 772 QAAECFQAALQLEE 785 (799)
T ss_pred HHHHHHHHHHhhcc
Confidence 99999998876543
No 70
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.13 E-value=0.016 Score=68.87 Aligned_cols=196 Identities=17% Similarity=0.145 Sum_probs=131.0
Q ss_pred HHHHHhhCCHHHHHHHHHHHHH---------H------------HHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHH
Q 004943 415 VAVELTRSGFVEAQEALVQMKN---------W------------FIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHY 473 (722)
Q Consensus 415 g~~~l~~g~~~eA~~~l~~Al~---------l------------~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f 473 (722)
+.+++.-..|+.|...+..... + +.+.|+........+...+|+++...+...+++.+|
T Consensus 323 ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~ 402 (895)
T KOG2076|consen 323 AELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHF 402 (895)
T ss_pred HHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHH
Confidence 4444444556666666555554 1 223344333444557889999999999999999999
Q ss_pred HHHHHhhcc--hhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHH
Q 004943 474 VEAAKITES--KSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARN 551 (722)
Q Consensus 474 ~~AL~l~~~--~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~ 551 (722)
. .-.+ .....-.+..++..+...|.+.+ |++...+++...+. +-+..++.+|..++..|++++|..
T Consensus 403 l----~~~n~~~~d~~dL~~d~a~al~~~~~~~~---Al~~l~~i~~~~~~-----~~~~vw~~~a~c~~~l~e~e~A~e 470 (895)
T KOG2076|consen 403 L----VEDNVWVSDDVDLYLDLADALTNIGKYKE---ALRLLSPITNREGY-----QNAFVWYKLARCYMELGEYEEAIE 470 (895)
T ss_pred H----HHhcCChhhhHHHHHHHHHHHHhcccHHH---HHHHHHHHhcCccc-----cchhhhHHHHHHHHHHhhHHHHHH
Confidence 3 2222 23334446777888888777655 44555555443321 236789999999999999999999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHH---HHHHHcCChhHHHHHHHHHHHHHHHcCCch
Q 004943 552 RLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSL---TLAKKLYDIPTQIWALSVLTALYQQLGDRG 628 (722)
Q Consensus 552 ~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al---~lAkki~D~~~q~~al~~L~~l~~~~Gd~~ 628 (722)
+|..+|.+.- ..- .++..|+.++..+|++++|.+.+.+-. ....+....+-....+.....++...|+.+
T Consensus 471 ~y~kvl~~~p-~~~------D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E 543 (895)
T KOG2076|consen 471 FYEKVLILAP-DNL------DARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKRE 543 (895)
T ss_pred HHHHHHhcCC-Cch------hhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHH
Confidence 9999999943 222 477899999999999999988777622 001111222334555667777888888766
Q ss_pred h
Q 004943 629 N 629 (722)
Q Consensus 629 ~ 629 (722)
+
T Consensus 544 ~ 544 (895)
T KOG2076|consen 544 E 544 (895)
T ss_pred H
Confidence 5
No 71
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=0.015 Score=65.72 Aligned_cols=213 Identities=15% Similarity=0.049 Sum_probs=137.9
Q ss_pred HHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHH
Q 004943 411 LENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCH 490 (722)
Q Consensus 411 Le~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~al 490 (722)
+.+.+.+++.+|.+.+....-..+++-.++.--.. ...+.....+|-.+..+|+|+.|...|+.+|...+.+..
T Consensus 260 ~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~-klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~----- 333 (539)
T KOG0548|consen 260 LNNIAAVYLERGKYAECIELCEKAVEVGRELRADY-KLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL----- 333 (539)
T ss_pred HHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHH-HHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH-----
Confidence 45667777888877777777666666554432111 124555666888888999999999999888766555210
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHH
Q 004943 491 AYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLV 570 (722)
Q Consensus 491 lnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~ 570 (722)
.-...+ +++++...... . +.+. +.|.-....|.-++..|+|.+|..+|.+|++.. .--
T Consensus 334 ------ls~lk~---~Ek~~k~~e~~-a----~~~p-e~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-------P~D 391 (539)
T KOG0548|consen 334 ------LSKLKE---AEKALKEAERK-A----YINP-EKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-------PED 391 (539)
T ss_pred ------HHHHHH---HHHHHHHHHHH-H----hhCh-hHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-------Cch
Confidence 000011 22222211110 0 0001 245667777999999999999999999987762 233
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHHHHHHHhHHHHH
Q 004943 571 SQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDELQKRLAD 650 (722)
Q Consensus 571 a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~l~~~~~~ 650 (722)
+..+-+.+-.|...|.+..|.+-+..+..+ |+.. ..+..-=+.++..+.++++|++.|+.....-
T Consensus 392 a~lYsNRAac~~kL~~~~~aL~Da~~~ieL-----~p~~-~kgy~RKg~al~~mk~ydkAleay~eale~d--------- 456 (539)
T KOG0548|consen 392 ARLYSNRAACYLKLGEYPEALKDAKKCIEL-----DPNF-IKAYLRKGAALRAMKEYDKALEAYQEALELD--------- 456 (539)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----CchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---------
Confidence 456667888899999999999888887777 3322 2222222667778888899988887766543
Q ss_pred hhhchhhHHHHhhhcchhhc
Q 004943 651 AYSSIHHIELISKVKLEVQQ 670 (722)
Q Consensus 651 a~~~~~h~~l~~~~~~~~~~ 670 (722)
|.-.++++|.+=++.+
T Consensus 457 ----p~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 457 ----PSNAEAIDGYRRCVEA 472 (539)
T ss_pred ----chhHHHHHHHHHHHHH
Confidence 6666777777777764
No 72
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.12 E-value=0.0083 Score=74.98 Aligned_cols=241 Identities=9% Similarity=-0.041 Sum_probs=163.2
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhC
Q 004943 343 YALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRS 422 (722)
Q Consensus 343 ~aLvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g 422 (722)
++..-++.+.+ ..|.+++|.+.+++.... ..|..+. ..+...+..+++..|
T Consensus 543 vTYnsLI~a~~--k~G~~deA~~lf~eM~~~------~~gi~PD---------------------~vTynaLI~ay~k~G 593 (1060)
T PLN03218 543 VVFNALISACG--QSGAVDRAFDVLAEMKAE------THPIDPD---------------------HITVGALMKACANAG 593 (1060)
T ss_pred HHHHHHHHHHH--HCCCHHHHHHHHHHHHHh------cCCCCCc---------------------HHHHHHHHHHHHHCC
Confidence 33344444433 457788877777665432 2333342 345677888999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCC
Q 004943 423 GFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGD 502 (722)
Q Consensus 423 ~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~ 502 (722)
++++|.+.+.++.+..- .|+. .+++.+...+...|++++|...|.+....--.+ -..++..+...|...|+
T Consensus 594 ~ldeA~elf~~M~e~gi-~p~~------~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P--D~~TynsLI~a~~k~G~ 664 (1060)
T PLN03218 594 QVDRAKEVYQMIHEYNI-KGTP------EVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP--DEVFFSALVDVAGHAGD 664 (1060)
T ss_pred CHHHHHHHHHHHHHcCC-CCCh------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhCCC
Confidence 99999999988876310 1222 456777777788999999999996544321122 23455666677888888
Q ss_pred hhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 004943 503 AESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLAL 582 (722)
Q Consensus 503 ~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~ 582 (722)
.+.+.+.++..... +-.. -..++..+...|.+.|++++|...|.+..+. |- .-...+.+.|-..|.
T Consensus 665 ~eeA~~l~~eM~k~----G~~p----d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~-----g~-~PdvvtyN~LI~gy~ 730 (1060)
T PLN03218 665 LDKAFEILQDARKQ----GIKL----GTVSYSSLMGACSNAKNWKKALELYEDIKSI-----KL-RPTVSTMNALITALC 730 (1060)
T ss_pred HHHHHHHHHHHHHc----CCCC----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----CC-CCCHHHHHHHHHHHH
Confidence 87777666655432 1112 2357888888999999999999999876433 22 112356888999999
Q ss_pred hCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHHH
Q 004943 583 ALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 640 (722)
Q Consensus 583 a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~ 640 (722)
..|+.++|.+.++.-.. ..-.+| ..++..|-..+...|+.+.|.+.++...+.
T Consensus 731 k~G~~eeAlelf~eM~~-~Gi~Pd----~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 731 EGNQLPKALEVLSEMKR-LGLCPN----TITYSILLVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred HCCCHHHHHHHHHHHHH-cCCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 99999999999987532 222344 445666668899999999999988876543
No 73
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.06 E-value=0.00013 Score=73.94 Aligned_cols=121 Identities=20% Similarity=0.143 Sum_probs=89.5
Q ss_pred hCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH-HHh
Q 004943 421 RSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVS-YFC 499 (722)
Q Consensus 421 ~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v-~l~ 499 (722)
.++.++++..++++++. .|+. +..+..+|.++..+|++++|+..|..++++..+. ...+.++|.+ |..
T Consensus 52 ~~~~~~~i~~l~~~L~~---~P~~-----~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~---~~~~~~lA~aL~~~ 120 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA---NPQN-----SEQWALLGEYYLWRNDYDNALLAYRQALQLRGEN---AELYAALATVLYYQ 120 (198)
T ss_pred chhHHHHHHHHHHHHHH---CCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHh
Confidence 44556666676666653 4553 3468999999999999999999999999887654 3444666776 456
Q ss_pred cCCh--hHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 004943 500 IGDA--ESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAH 561 (722)
Q Consensus 500 ~G~~--e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~ 561 (722)
.|+. +++.+.++.+... .++ ...+++.+|..++..|++++|..+++++|++-.
T Consensus 121 ~g~~~~~~A~~~l~~al~~--dP~-------~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 121 AGQHMTPQTREMIDKALAL--DAN-------EVTALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred cCCCCcHHHHHHHHHHHHh--CCC-------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 6763 5677666655443 111 235789999999999999999999999999954
No 74
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.01 E-value=0.0008 Score=70.44 Aligned_cols=173 Identities=11% Similarity=0.083 Sum_probs=132.2
Q ss_pred hhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 004943 413 NKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAY 492 (722)
Q Consensus 413 ~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~alln 492 (722)
..|.-....|+|++|++.+++.++ ..|+. .....+.+.+|..+...|+|++|...|++.++...+......+...
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~---~yP~s--~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~ 111 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDN---RYPFG--PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYM 111 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH---hCCCC--hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHH
Confidence 457778889999999999999877 45554 2345678999999999999999999999999998888877888888
Q ss_pred HHHHHHhcC---------------ChhHHHHHHHHhcchhcccccccC----------hHH-HHHHHHHHHHHHHhcCCH
Q 004943 493 AAVSYFCIG---------------DAESSSQAIDLIGPVYQMKDTING----------VRE-EASLHFAYGLLLMRQQDF 546 (722)
Q Consensus 493 la~v~l~~G---------------~~e~a~~aL~l~~~l~r~~~~~~~----------~~~-~A~al~~lG~~~~~~G~~ 546 (722)
+|.++...+ |...+.+|++.+..+.+.-+++.. +++ -|.--+..|..|.+.|++
T Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y 191 (243)
T PRK10866 112 RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAY 191 (243)
T ss_pred HHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence 888764443 223366676666665554433211 111 144556778889999999
Q ss_pred HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHH
Q 004943 547 QEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREIL 594 (722)
Q Consensus 547 ~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l 594 (722)
..|...++..++- --+....-.+|..|+..|...|..++|.+..
T Consensus 192 ~AA~~r~~~v~~~----Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~ 235 (243)
T PRK10866 192 VAVVNRVEQMLRD----YPDTQATRDALPLMENAYRQLQLNAQADKVA 235 (243)
T ss_pred HHHHHHHHHHHHH----CCCCchHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 9999999999875 4455667789999999999999999998754
No 75
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.99 E-value=7.4e-05 Score=79.22 Aligned_cols=229 Identities=17% Similarity=0.113 Sum_probs=145.4
Q ss_pred HHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHHHH
Q 004943 351 VILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEA 430 (722)
Q Consensus 351 ~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~~ 430 (722)
+-|+...|.+.+|+|.++.+|+. + ...+ .|++ |.-+|-+-..+..|+..
T Consensus 230 gkCylrLgm~r~AekqlqssL~q----~---~~~d----------------Tfll--------LskvY~ridQP~~AL~~ 278 (478)
T KOG1129|consen 230 GKCYLRLGMPRRAEKQLQSSLTQ----F---PHPD----------------TFLL--------LSKVYQRIDQPERALLV 278 (478)
T ss_pred HHHHHHhcChhhhHHHHHHHhhc----C---Cchh----------------HHHH--------HHHHHHHhccHHHHHHH
Confidence 55667788899999999999888 2 2222 2311 57778888888888888
Q ss_pred HHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHH
Q 004943 431 LVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAI 510 (722)
Q Consensus 431 l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL 510 (722)
+.+-++.| |- .-..+.-.+.++.++|.+++|+.+|..+++.-.. ..++++ .+|..|.--++||-+.+-.
T Consensus 279 ~~~gld~f---P~-----~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~-nvEaiA--cia~~yfY~~~PE~AlryY 347 (478)
T KOG1129|consen 279 IGEGLDSF---PF-----DVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPI-NVEAIA--CIAVGYFYDNNPEMALRYY 347 (478)
T ss_pred HhhhhhcC---Cc-----hhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCc-cceeee--eeeeccccCCChHHHHHHH
Confidence 88877743 32 2234555677889999999999999888775322 233333 2344455445555433333
Q ss_pred HHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHH
Q 004943 511 DLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQA 590 (722)
Q Consensus 511 ~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA 590 (722)
.++....-. ++ .-+.++|..++..+.++-+...+++||..+. +. ...+.+-.+||.+.-..||+.-|
T Consensus 348 RRiLqmG~~---sp------eLf~NigLCC~yaqQ~D~~L~sf~RAlstat-~~---~~aaDvWYNlg~vaV~iGD~nlA 414 (478)
T KOG1129|consen 348 RRILQMGAQ---SP------ELFCNIGLCCLYAQQIDLVLPSFQRALSTAT-QP---GQAADVWYNLGFVAVTIGDFNLA 414 (478)
T ss_pred HHHHHhcCC---Ch------HHHhhHHHHHHhhcchhhhHHHHHHHHhhcc-Cc---chhhhhhhccceeEEeccchHHH
Confidence 322222111 11 2466777777777777777777777777754 12 33456777777777777777777
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHHH
Q 004943 591 REILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 640 (722)
Q Consensus 591 ~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~ 640 (722)
-.+++-|++ .|. .-..+++.|+-+-+..|+...|...+..+..+
T Consensus 415 ~rcfrlaL~-----~d~-~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 415 KRCFRLALT-----SDA-QHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHHHhc-----cCc-chHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 777776664 221 12457777777777777777777766655443
No 76
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.97 E-value=0.00018 Score=70.45 Aligned_cols=115 Identities=12% Similarity=0.052 Sum_probs=88.2
Q ss_pred hhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 004943 483 KSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHN 562 (722)
Q Consensus 483 ~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~ 562 (722)
....+.++.++|.++...|+++++...+..+..+...+ ...+.+++++|.++...|++++|...+++|+++-.
T Consensus 31 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~------~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~- 103 (168)
T CHL00033 31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDP------YDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP- 103 (168)
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccc------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-
Confidence 34678899999999999999988666666554441111 12456899999999999999999999999999833
Q ss_pred hcCC-hHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHc
Q 004943 563 HMGN-LQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKL 604 (722)
Q Consensus 563 ~~gd-~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki 604 (722)
..+. ....+.++..+|..+...|++++|...+.+|+...++.
T Consensus 104 ~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a 146 (168)
T CHL00033 104 FLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQA 146 (168)
T ss_pred CcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 2322 34455566666666669999999999999999988777
No 77
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.94 E-value=0.00093 Score=67.70 Aligned_cols=160 Identities=16% Similarity=0.109 Sum_probs=116.0
Q ss_pred hHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 004943 414 KVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYA 493 (722)
Q Consensus 414 Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnl 493 (722)
-+..|+..|+|+...... ++.-+... -....++.+++...++.+++...+. ..++.++
T Consensus 22 ~~~~Y~~~g~~~~v~~~~-------~~~~~~~~------------~~~~~~~~~~~i~~l~~~L~~~P~~---~~~w~~L 79 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEY-------QRLADPLH------------QFASQQTPEAQLQALQDKIRANPQN---SEQWALL 79 (198)
T ss_pred HHHHHHHcchHHHHHHHH-------HHHhCccc------------cccCchhHHHHHHHHHHHHHHCCCC---HHHHHHH
Confidence 577889999998864442 11111000 0013677889999998888765443 3467888
Q ss_pred HHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHHHHHHhcCChHHH
Q 004943 494 AVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLL-MRQQD--FQEARNRLAKGLQIAHNHMGNLQLV 570 (722)
Q Consensus 494 a~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~-~~~G~--~~eAk~~L~qAL~la~~~~gd~~l~ 570 (722)
|.+|...|+++.+..+++.+..+. ++ ...++..+|.++ ...|+ +++|...++++++.-- .|
T Consensus 80 g~~~~~~g~~~~A~~a~~~Al~l~--P~-------~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP---~~---- 143 (198)
T PRK10370 80 GEYYLWRNDYDNALLAYRQALQLR--GE-------NAELYAALATVLYYQAGQHMTPQTREMIDKALALDA---NE---- 143 (198)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CC-------CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC---CC----
Confidence 999999999998888887665541 11 345678888864 67777 5999999999999822 12
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHH
Q 004943 571 SQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQI 611 (722)
Q Consensus 571 a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~ 611 (722)
..++.+||..++..|++++|...++.++++-..-.++..-+
T Consensus 144 ~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i 184 (198)
T PRK10370 144 VTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLV 184 (198)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 35889999999999999999999999999887766664433
No 78
>PLN03077 Protein ECB2; Provisional
Probab=97.94 E-value=0.02 Score=70.45 Aligned_cols=190 Identities=9% Similarity=-0.103 Sum_probs=98.0
Q ss_pred hHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 004943 414 KVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYA 493 (722)
Q Consensus 414 Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnl 493 (722)
++..+...|++.+|++.|.+++. .-.||.. ....+++ .+...|..+.+...+...++.--. ......+.+
T Consensus 461 mi~~~~~~g~~~eA~~lf~~m~~--~~~pd~~-----t~~~lL~-a~~~~g~l~~~~~i~~~~~~~g~~--~~~~~~naL 530 (857)
T PLN03077 461 IIAGLRLNNRCFEALIFFRQMLL--TLKPNSV-----TLIAALS-ACARIGALMCGKEIHAHVLRTGIG--FDGFLPNAL 530 (857)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh--CCCCCHh-----HHHHHHH-HHhhhchHHHhHHHHHHHHHhCCC--ccceechHH
Confidence 34555556666666666666543 1123321 1112222 224455566665555444332111 111222333
Q ss_pred HHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHH
Q 004943 494 AVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQY 573 (722)
Q Consensus 494 a~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~ 573 (722)
-..|...|+.+.+.+.++.. + .+ ..+++.+...+...|+.++|...|.+-.+. |-.... .+
T Consensus 531 i~~y~k~G~~~~A~~~f~~~-~--------~d----~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~-----g~~Pd~-~T 591 (857)
T PLN03077 531 LDLYVRCGRMNYAWNQFNSH-E--------KD----VVSWNILLTGYVAHGKGSMAVELFNRMVES-----GVNPDE-VT 591 (857)
T ss_pred HHHHHHcCCHHHHHHHHHhc-C--------CC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCCc-cc
Confidence 45566667766655555432 0 11 135666666677778888888877775432 221121 23
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHH
Q 004943 574 LTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEY 636 (722)
Q Consensus 574 L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~ 636 (722)
++.+=..+...|+.++|..++.....-..-.++ ...+..+-+++...|+.++|.+.++.
T Consensus 592 ~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~----~~~y~~lv~~l~r~G~~~eA~~~~~~ 650 (857)
T PLN03077 592 FISLLCACSRSGMVTQGLEYFHSMEEKYSITPN----LKHYACVVDLLGRAGKLTEAYNFINK 650 (857)
T ss_pred HHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc----hHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 334435577777777777777654432222222 45666777777777777777666554
No 79
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.92 E-value=0.00075 Score=64.53 Aligned_cols=121 Identities=20% Similarity=0.183 Sum_probs=82.2
Q ss_pred cCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004943 500 IGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGN 579 (722)
Q Consensus 500 ~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~ 579 (722)
.|++..+...++.+..-+... . -...+.+.+|..++..|++++|+..|++++... .|..+...+...|+.
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s---~---ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~----~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSS---P---YAALAALQLAKAAYEQGDYDEAKAALEKALANA----PDPELKPLARLRLAR 93 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCC---h---HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC----CCHHHHHHHHHHHHH
Confidence 455555555555444332211 0 134567778888888888888888888877752 344666677777888
Q ss_pred HHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHH
Q 004943 580 LALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYR 637 (722)
Q Consensus 580 ~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~ 637 (722)
++...|++++|.+.+.. +.+......+...+|++|...|+.++|...|+.+
T Consensus 94 ~~~~~~~~d~Al~~L~~-------~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQ-------IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHcCCHHHHHHHHHh-------ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 88888888888888866 3445556667778888888888888888887754
No 80
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=0.00016 Score=81.47 Aligned_cols=193 Identities=16% Similarity=0.192 Sum_probs=153.6
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhH
Q 004943 426 EAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES 505 (722)
Q Consensus 426 eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~ 505 (722)
+..+.|.-+..+.+.+|+. +..++..|.|+...|++++|.+.|.+|..+-+ .-+-+++..|..+.-.|+.|+
T Consensus 293 ~~n~Lf~lsh~LV~~yP~~-----a~sW~aVg~YYl~i~k~seARry~SKat~lD~---~fgpaWl~fghsfa~e~EhdQ 364 (611)
T KOG1173|consen 293 KSNKLFLLSHKLVDLYPSK-----ALSWFAVGCYYLMIGKYSEARRYFSKATTLDP---TFGPAWLAFGHSFAGEGEHDQ 364 (611)
T ss_pred ccchHHHHHHHHHHhCCCC-----CcchhhHHHHHHHhcCcHHHHHHHHHHhhcCc---cccHHHHHHhHHhhhcchHHH
Confidence 4556777788888889986 46689999999999999999999977654433 233455666888888888998
Q ss_pred HHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCC
Q 004943 506 SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALH 585 (722)
Q Consensus 506 a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g 585 (722)
+-.|+..+-.+...+ +-+ ++-+|.-|.+.+++.-|..++.+|+.++- .| + .+++-+|.+.+..+
T Consensus 365 AmaaY~tAarl~~G~---hlP------~LYlgmey~~t~n~kLAe~Ff~~A~ai~P---~D-p---lv~~Elgvvay~~~ 428 (611)
T KOG1173|consen 365 AMAAYFTAARLMPGC---HLP------SLYLGMEYMRTNNLKLAEKFFKQALAIAP---SD-P---LVLHELGVVAYTYE 428 (611)
T ss_pred HHHHHHHHHHhccCC---cch------HHHHHHHHHHhccHHHHHHHHHHHHhcCC---Cc-c---hhhhhhhheeehHh
Confidence 888887777664443 212 55688999999999999999999999943 23 3 48899999999999
Q ss_pred ChHHHHHHHHHHHHHHHHcCChhHHHHH--HHHHHHHHHHcCCchhHhHHHHHHHHHHHH
Q 004943 586 DTVQAREILRSSLTLAKKLYDIPTQIWA--LSVLTALYQQLGDRGNEMENDEYRRKKLDE 643 (722)
Q Consensus 586 ~~~qA~~~l~~Al~lAkki~D~~~q~~a--l~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~ 643 (722)
.+.+|...++.++.-.+....-.. -|. .++||.+|+.++.+.+|..+|+.+......
T Consensus 429 ~y~~A~~~f~~~l~~ik~~~~e~~-~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k 487 (611)
T KOG1173|consen 429 EYPEALKYFQKALEVIKSVLNEKI-FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK 487 (611)
T ss_pred hhHHHHHHHHHHHHHhhhcccccc-chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 999999999999977666655432 343 589999999999999999999998876654
No 81
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.85 E-value=0.0005 Score=81.99 Aligned_cols=140 Identities=6% Similarity=-0.071 Sum_probs=114.5
Q ss_pred HhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004943 478 KITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGL 557 (722)
Q Consensus 478 ~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL 557 (722)
...++....+-+..+||.+..++|.++++...++.+.+++-. -+.+...++.+..+.+++++|...++++|
T Consensus 77 ~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd---------~~~a~~~~a~~L~~~~~~eeA~~~~~~~l 147 (694)
T PRK15179 77 DYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD---------SSEAFILMLRGVKRQQGIEAGRAEIELYF 147 (694)
T ss_pred HHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC---------cHHHHHHHHHHHHHhccHHHHHHHHHHHh
Confidence 444555555777889999999999999988888877666221 23577888899999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHH
Q 004943 558 QIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYR 637 (722)
Q Consensus 558 ~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~ 637 (722)
... ...+.+++.+|......|++++|.++++.+++ .-+|. .+++..++.++...|+.++|...|+.+
T Consensus 148 ~~~-------p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~---~~p~~---~~~~~~~a~~l~~~G~~~~A~~~~~~a 214 (694)
T PRK15179 148 SGG-------SSSAREILLEAKSWDEIGQSEQADACFERLSR---QHPEF---ENGYVGWAQSLTRRGALWRARDVLQAG 214 (694)
T ss_pred hcC-------CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh---cCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 883 23356889999999999999999999999988 44443 678889999999999999999999887
Q ss_pred HH
Q 004943 638 RK 639 (722)
Q Consensus 638 ~~ 639 (722)
.+
T Consensus 215 ~~ 216 (694)
T PRK15179 215 LD 216 (694)
T ss_pred HH
Confidence 43
No 82
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.82 E-value=0.15 Score=62.29 Aligned_cols=181 Identities=10% Similarity=-0.088 Sum_probs=121.4
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhC
Q 004943 343 YALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRS 422 (722)
Q Consensus 343 ~aLvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g 422 (722)
|+...+-. .+...++-++|+..+++++.. .+.... ... .......|...++-.+
T Consensus 328 y~~~a~ad--ayl~~~~P~kA~~l~~~~~~~-------~~~~~~-~~~----------------~~~~~~~L~yA~ld~e 381 (822)
T PRK14574 328 YARRWAAS--AYIDRRLPEKAAPILSSLYYS-------DGKTFR-NSD----------------DLLDADDLYYSLNESE 381 (822)
T ss_pred HHHHHHHH--HHHhcCCcHHHHHHHHHHhhc-------cccccC-CCc----------------chHHHHHHHHHHHhcc
Confidence 55544433 344667778888888877655 111000 000 1222245788999999
Q ss_pred CHHHHHHHHHHHHHHHH----hCC--c-hhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 004943 423 GFVEAQEALVQMKNWFI----RFP--T-ILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAV 495 (722)
Q Consensus 423 ~~~eA~~~l~~Al~l~~----~~~--d-~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~ 495 (722)
+|++|...+.+..+--- .++ + .....-.....+.+.++...|++.+|++.+++.+..+....+ ..+..|.
T Consensus 382 ~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~---l~~~~A~ 458 (822)
T PRK14574 382 QLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQN---LRIALAS 458 (822)
T ss_pred cHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHH
Confidence 99999999999987211 000 0 001112356778889999999999999999887766544332 2346789
Q ss_pred HHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 004943 496 SYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAH 561 (722)
Q Consensus 496 v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~ 561 (722)
++..+|.|..+.+.++.+..+ .+. ...+.+..|.++..+|++.+|+......++..-
T Consensus 459 v~~~Rg~p~~A~~~~k~a~~l--~P~-------~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~P 515 (822)
T PRK14574 459 IYLARDLPRKAEQELKAVESL--APR-------SLILERAQAETAMALQEWHQMELLTDDVISRSP 515 (822)
T ss_pred HHHhcCCHHHHHHHHHHHhhh--CCc-------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCC
Confidence 999999998887777665554 111 224677889999999999999999999888744
No 83
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.82 E-value=0.0018 Score=77.74 Aligned_cols=41 Identities=7% Similarity=-0.017 Sum_probs=21.3
Q ss_pred hHhhhcCChHHHHHHHHhHHHHHhhc-CChhHHHHHHHHHHHHHh
Q 004943 138 NAFIIEGDYQSSISALQSGYVCATEI-SYPDLQMFFATAILHVHL 181 (722)
Q Consensus 138 ~~~~~~~d~~~A~~~L~~g~~~A~~~-~~~~~~v~f~l~~~~~~L 181 (722)
..+...|++..|++.++... ... ..|-...+.+++.+...+
T Consensus 95 ~~l~~~g~~~~Al~~f~~m~---~~~~~~~~~~t~~~ll~a~~~~ 136 (697)
T PLN03081 95 EKLVACGRHREALELFEILE---AGCPFTLPASTYDALVEACIAL 136 (697)
T ss_pred HHHHcCCCHHHHHHHHHHHH---hcCCCCCCHHHHHHHHHHHHhC
Confidence 34556778887777766522 111 123444555555555444
No 84
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.79 E-value=0.00072 Score=66.52 Aligned_cols=101 Identities=20% Similarity=0.268 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCh
Q 004943 528 EEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDI 607 (722)
Q Consensus 528 ~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~ 607 (722)
.++.+++.+|..+...|++++|..++++++++.. +....+.++..+|.++...|++++|...++.|+.....
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---- 104 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEE----DPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK---- 104 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh----ccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc----
Confidence 4788999999999999999999999999999843 11224578999999999999999999999999986422
Q ss_pred hHHHHHHHHHHHHHHHcCCchhHhHHHHHHH
Q 004943 608 PTQIWALSVLTALYQQLGDRGNEMENDEYRR 638 (722)
Q Consensus 608 ~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~ 638 (722)
...+...++.+|...|+...+...++.+.
T Consensus 105 --~~~~~~~lg~~~~~~g~~~~a~~~~~~A~ 133 (172)
T PRK02603 105 --QPSALNNIAVIYHKRGEKAEEAGDQDEAE 133 (172)
T ss_pred --cHHHHHHHHHHHHHcCChHhHhhCHHHHH
Confidence 24455677777777666544444443333
No 85
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.78 E-value=0.0029 Score=64.24 Aligned_cols=174 Identities=15% Similarity=0.135 Sum_probs=125.7
Q ss_pred HHHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHH
Q 004943 409 QFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAM 488 (722)
Q Consensus 409 ~lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~ 488 (722)
..+...|......|+|.+|++.+++....+ |.. .....+...+|..+...|+|+.|...|+.-++...+......
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~---P~s--~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~ 80 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRY---PNS--PYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADY 80 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH----TTS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHC---CCC--hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhh
Confidence 345678999999999999999999987764 443 234567889999999999999999999998888777766677
Q ss_pred HHHHHHHHHHhcC------C--hhHHHHHHHHhcchhcccccccCh----------HH-HHHHHHHHHHHHHhcCCHHHH
Q 004943 489 CHAYAAVSYFCIG------D--AESSSQAIDLIGPVYQMKDTINGV----------RE-EASLHFAYGLLLMRQQDFQEA 549 (722)
Q Consensus 489 allnla~v~l~~G------~--~e~a~~aL~l~~~l~r~~~~~~~~----------~~-~A~al~~lG~~~~~~G~~~eA 549 (722)
++..+|.++.... + ...+.+|+..+..+.+.-+++... ++ .|.--+.+|..|.+.|.+..|
T Consensus 81 A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA 160 (203)
T PF13525_consen 81 ALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAA 160 (203)
T ss_dssp HHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHH
T ss_pred HHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHH
Confidence 7777788765543 2 233777777776665544333111 11 245666789999999999999
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHH
Q 004943 550 RNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAR 591 (722)
Q Consensus 550 k~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~ 591 (722)
...++..++- --+....-.++..|...+...|..+.|.
T Consensus 161 ~~r~~~v~~~----yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 161 IIRFQYVIEN----YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHH----STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHH----CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 9999998776 4466667789999999999999888554
No 86
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.75 E-value=0.0067 Score=72.05 Aligned_cols=258 Identities=16% Similarity=0.041 Sum_probs=176.1
Q ss_pred HHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHH
Q 004943 349 MVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQ 428 (722)
Q Consensus 349 ls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~ 428 (722)
+.++......++++|...+.+.-.. +...++... ..+ .+.| +++ -+.+...+|++++|.
T Consensus 420 l~aW~~~s~~r~~ea~~li~~l~~~----l~~~~~~~~---~~l--~ae~--------~aL----~a~val~~~~~e~a~ 478 (894)
T COG2909 420 LQAWLLASQHRLAEAETLIARLEHF----LKAPMHSRQ---GDL--LAEF--------QAL----RAQVALNRGDPEEAE 478 (894)
T ss_pred HHHHHHHHccChHHHHHHHHHHHHH----hCcCcccch---hhH--HHHH--------HHH----HHHHHHhcCCHHHHH
Confidence 3466677788999999988888777 444433221 111 2233 333 478889999999999
Q ss_pred HHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchh---HHHHHHHHHHHHHHhcCCh--
Q 004943 429 EALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS---MQAMCHAYAAVSYFCIGDA-- 503 (722)
Q Consensus 429 ~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~---~~A~allnla~v~l~~G~~-- 503 (722)
+..+.++...-.. .......+..+.|...+=.|+|++|+.+-+++.+.++... ....+.+--+.+...+|..
T Consensus 479 ~lar~al~~L~~~---~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~ 555 (894)
T COG2909 479 DLARLALVQLPEA---AYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVAR 555 (894)
T ss_pred HHHHHHHHhcccc---cchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHH
Confidence 9988888754332 2234557788899999999999999999999887765443 5666666678888898942
Q ss_pred hHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Q 004943 504 ESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALA 583 (722)
Q Consensus 504 e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a 583 (722)
+....+..+++...-.. ... -...+...+.++...-+++.+..-.+.++++.....-+.++.+.++..|+.+++.
T Consensus 556 a~~~~~~~~~~~q~l~q---~~~--~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~ 630 (894)
T COG2909 556 AEQEKAFNLIREQHLEQ---KPR--HEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFL 630 (894)
T ss_pred HHHHHHHHHHHHHHhhh---ccc--chhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHh
Confidence 22333333333221100 101 1123334444444445588888888888888765455567777777799999999
Q ss_pred CCChHHHHHHHHHHHHHHHHc-CChhHHHHHHHHHHHHHHHcCCchhHhHHHH
Q 004943 584 LHDTVQAREILRSSLTLAKKL-YDIPTQIWALSVLTALYQQLGDRGNEMENDE 635 (722)
Q Consensus 584 ~g~~~qA~~~l~~Al~lAkki-~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~ 635 (722)
.||.++|......-..+.... +++....-+...-..+-...||+..+.+...
T Consensus 631 ~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~ 683 (894)
T COG2909 631 RGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLL 683 (894)
T ss_pred cCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHH
Confidence 999999999999998888877 6666666666666667778888877766443
No 87
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.74 E-value=0.00038 Score=66.80 Aligned_cols=95 Identities=7% Similarity=-0.095 Sum_probs=78.0
Q ss_pred HHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHHHH
Q 004943 351 VILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEA 430 (722)
Q Consensus 351 ~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~~ 430 (722)
+......|++++|..+++.++.. + +. ....+.++|.++...|++++|+..
T Consensus 31 g~~~~~~g~~~~A~~~~~~al~~---------~-P~--------------------~~~a~~~lg~~~~~~g~~~~A~~~ 80 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSWLVMA---------Q-PW--------------------SWRAHIALAGTWMMLKEYTTAINF 80 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc---------C-CC--------------------cHHHHHHHHHHHHHHhhHHHHHHH
Confidence 66778899999999999999877 2 22 233446789999999999999999
Q ss_pred HHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcch
Q 004943 431 LVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK 483 (722)
Q Consensus 431 l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~ 483 (722)
|.+++++. |+ -+..++.+|.++..+|++++|...|+.+++...+.
T Consensus 81 y~~Al~l~---p~-----~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~ 125 (144)
T PRK15359 81 YGHALMLD---AS-----HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYAD 125 (144)
T ss_pred HHHHHhcC---CC-----CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 99999863 33 23568999999999999999999999999876544
No 88
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.73 E-value=0.00083 Score=66.08 Aligned_cols=106 Identities=19% Similarity=0.176 Sum_probs=76.9
Q ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccCh
Q 004943 447 ACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGV 526 (722)
Q Consensus 447 ~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~ 526 (722)
...+..++..|.++...|++++|..+|+++++...+....+.++.++|.++...|+++++...+..+......
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------- 104 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK------- 104 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-------
Confidence 4567889999999999999999999999999876665556778899999999999998876666655443111
Q ss_pred HHHHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHHHH
Q 004943 527 REEASLHFAYGLLLMRQQ-------DFQEARNRLAKGLQIAH 561 (722)
Q Consensus 527 ~~~A~al~~lG~~~~~~G-------~~~eAk~~L~qAL~la~ 561 (722)
...++..+|.++...| ++.+|...+.+|++...
T Consensus 105 --~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~ 144 (172)
T PRK02603 105 --QPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWK 144 (172)
T ss_pred --cHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHH
Confidence 1233445566665555 45556666666655544
No 89
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.67 E-value=0.00047 Score=67.01 Aligned_cols=115 Identities=14% Similarity=0.075 Sum_probs=88.7
Q ss_pred HHHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHH
Q 004943 409 QFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAM 488 (722)
Q Consensus 409 ~lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~ 488 (722)
..+..+|......|++++|.+.|+-+..+- |. .+.-++++|.+++.+|+|++|...|..|..+..+. ..
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D---p~-----~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd---p~ 104 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYD---AW-----SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA---PQ 104 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cc-----cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---ch
Confidence 334567999999999999999998877653 22 23448999999999999999999998888765432 34
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHH
Q 004943 489 CHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHF 534 (722)
Q Consensus 489 allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~ 534 (722)
+..|+|.+++..|+.+.+.++++.+...|...+....++.+|..++
T Consensus 105 ~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L 150 (157)
T PRK15363 105 APWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEKML 150 (157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHH
Confidence 5578899999999999999999888888765554555555555443
No 90
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.64 E-value=0.00061 Score=65.37 Aligned_cols=95 Identities=12% Similarity=0.065 Sum_probs=77.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHH
Q 004943 453 EMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASL 532 (722)
Q Consensus 453 ~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~a 532 (722)
++..|......|++++|...|+.++....+ ...++.++|.++...|+++++...++.+..+ .++ -+.+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--~p~-------~~~a 94 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPW---SWRAHIALAGTWMMLKEYTTAINFYGHALML--DAS-------HPEP 94 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCC-------CcHH
Confidence 556799999999999999999988766433 3566788999999999998877777665544 111 2368
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 004943 533 HFAYGLLLMRQQDFQEARNRLAKGLQI 559 (722)
Q Consensus 533 l~~lG~~~~~~G~~~eAk~~L~qAL~l 559 (722)
++.+|.++...|++++|...|++|+++
T Consensus 95 ~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 95 VYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999998
No 91
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.62 E-value=0.00064 Score=61.15 Aligned_cols=103 Identities=17% Similarity=0.132 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHH
Q 004943 531 SLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQ 610 (722)
Q Consensus 531 ~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q 610 (722)
..++..|..+..+|++.+|..++.++++. ..+......+...+|.++...|++++|.++++.++... ++....
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~ 75 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKK----YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY---PKSPKA 75 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH----CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC---CCCCcc
Confidence 46788999999999999999999999876 22334456788899999999999999999999999765 332223
Q ss_pred HHHHHHHHHHHHHcCCchhHhHHHHHHHHH
Q 004943 611 IWALSVLTALYQQLGDRGNEMENDEYRRKK 640 (722)
Q Consensus 611 ~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~ 640 (722)
.++...++.++...|++++|...++...+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 76 PDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred cHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 678899999999999999999888776654
No 92
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.59 E-value=0.0071 Score=64.62 Aligned_cols=229 Identities=15% Similarity=0.105 Sum_probs=167.1
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcch--hHHHHHHHH
Q 004943 415 VAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK--SMQAMCHAY 492 (722)
Q Consensus 415 g~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~--~~~A~alln 492 (722)
|.-.+.....++|.+.|-++++ ..|.. --++..+|....++|..|.|.+.-+ +|-...+. ..+.+++.-
T Consensus 42 GlNfLLs~Q~dKAvdlF~e~l~---~d~~t-----~e~~ltLGnLfRsRGEvDRAIRiHQ-~L~~spdlT~~qr~lAl~q 112 (389)
T COG2956 42 GLNFLLSNQPDKAVDLFLEMLQ---EDPET-----FEAHLTLGNLFRSRGEVDRAIRIHQ-TLLESPDLTFEQRLLALQQ 112 (389)
T ss_pred HHHHHhhcCcchHHHHHHHHHh---cCchh-----hHHHHHHHHHHHhcchHHHHHHHHH-HHhcCCCCchHHHHHHHHH
Confidence 5556667788999999988877 23333 2347789999999999999999985 33333333 277899999
Q ss_pred HHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHH
Q 004943 493 AAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQ 572 (722)
Q Consensus 493 la~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~ 572 (722)
+|.-|...|=+|.++..+..+-.. +.. .-.++..+-.+|....+.+.|.+.-++-.++.. .-+.-..|+
T Consensus 113 L~~Dym~aGl~DRAE~~f~~L~de-------~ef--a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~--q~~~~eIAq 181 (389)
T COG2956 113 LGRDYMAAGLLDRAEDIFNQLVDE-------GEF--AEGALQQLLNIYQATREWEKAIDVAERLVKLGG--QTYRVEIAQ 181 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHhcc-------hhh--hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCC--ccchhHHHH
Confidence 999999988777766666554332 111 224788888899888888888888777766632 223577889
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHH----HHHHHhHHH
Q 004943 573 YLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRK----KLDELQKRL 648 (722)
Q Consensus 573 ~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~----~~~~l~~~~ 648 (722)
..-.|+..+....+.+.|+..+..|++..++- +++...||+++...|++++|.+.++.... +..++....
T Consensus 182 fyCELAq~~~~~~~~d~A~~~l~kAlqa~~~c------vRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L 255 (389)
T COG2956 182 FYCELAQQALASSDVDRARELLKKALQADKKC------VRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEML 255 (389)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHhhCccc------eehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 99999999999999999999999999865543 55889999999999999999998887654 455566667
Q ss_pred HHhhhc-hhhHHHHhhhcchhh
Q 004943 649 ADAYSS-IHHIELISKVKLEVQ 669 (722)
Q Consensus 649 ~~a~~~-~~h~~l~~~~~~~~~ 669 (722)
..||.. .--.+.+.|.+-.+.
T Consensus 256 ~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 256 YECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHHHhCCHHHHHHHHHHHHH
Confidence 777733 222334445444433
No 93
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=97.58 E-value=0.001 Score=59.14 Aligned_cols=82 Identities=24% Similarity=0.245 Sum_probs=72.9
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhcCChH---HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Q 004943 540 LMRQQDFQEARNRLAKGLQIAHNHMGNLQ---LVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSV 616 (722)
Q Consensus 540 ~~~~G~~~eAk~~L~qAL~la~~~~gd~~---l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~ 616 (722)
..+.|++.+|.+.|.+....+.. .++.. ..+.++..++.++...|++++|.+.+++|+.+|++.+|.....+++..
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~-~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~ 86 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQ-SNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSW 86 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhh-cccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 35789999999999999999875 44434 677889999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 004943 617 LTALYQ 622 (722)
Q Consensus 617 L~~l~~ 622 (722)
+..+..
T Consensus 87 ~~~l~~ 92 (94)
T PF12862_consen 87 LANLLK 92 (94)
T ss_pred HHHHhh
Confidence 887764
No 94
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.58 E-value=0.011 Score=64.65 Aligned_cols=241 Identities=18% Similarity=0.108 Sum_probs=138.4
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhC
Q 004943 343 YALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRS 422 (722)
Q Consensus 343 ~aLvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g 422 (722)
-+++|++-.-..-..|+++++-.|+.++-+. .|++. ....-..+-+.+.+|
T Consensus 117 p~l~~l~aA~AA~qrgd~~~an~yL~eaae~-------~~~~~----------------------l~v~ltrarlll~~~ 167 (400)
T COG3071 117 PVLAYLLAAEAAQQRGDEDRANRYLAEAAEL-------AGDDT----------------------LAVELTRARLLLNRR 167 (400)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHhcc-------CCCch----------------------HHHHHHHHHHHHhCC
Confidence 5789999999999999999999999988655 44322 111123577788999
Q ss_pred CHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchh-HHHHHHHHHHH---HHH
Q 004943 423 GFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS-MQAMCHAYAAV---SYF 498 (722)
Q Consensus 423 ~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~-~~A~allnla~---v~l 498 (722)
|+..|...+.++++.-.+.| .++.+.-.++...|++.+.+.+..+ ++..+-.+ .+..-+-+-+. .--
T Consensus 168 d~~aA~~~v~~ll~~~pr~~--------~vlrLa~r~y~~~g~~~~ll~~l~~-L~ka~~l~~~e~~~le~~a~~glL~q 238 (400)
T COG3071 168 DYPAARENVDQLLEMTPRHP--------EVLRLALRAYIRLGAWQALLAILPK-LRKAGLLSDEEAARLEQQAWEGLLQQ 238 (400)
T ss_pred CchhHHHHHHHHHHhCcCCh--------HHHHHHHHHHHHhccHHHHHHHHHH-HHHccCCChHHHHHHHHHHHHHHHHH
Confidence 99999999999988755444 4477888899999999998888743 22111111 11111111111 111
Q ss_pred hcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH------------------
Q 004943 499 CIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIA------------------ 560 (722)
Q Consensus 499 ~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la------------------ 560 (722)
. ++.+.+..........-+.-.+.+. ..-.++.-+...|++++|.....++|+-.
T Consensus 239 ~-~~~~~~~gL~~~W~~~pr~lr~~p~------l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~ 311 (400)
T COG3071 239 A-RDDNGSEGLKTWWKNQPRKLRNDPE------LVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPE 311 (400)
T ss_pred H-hccccchHHHHHHHhccHHhhcChh------HHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCch
Confidence 1 1111111111111111010000111 11122333345566666666666555431
Q ss_pred ---------HHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHh
Q 004943 561 ---------HNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEM 631 (722)
Q Consensus 561 ---------~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~ 631 (722)
-++.++.. +.+..||..++..+...+|.+.++.|+.......| ...|++++...|++..|.
T Consensus 312 ~l~k~~e~~l~~h~~~p---~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~-------~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 312 PLIKAAEKWLKQHPEDP---LLLSTLGRLALKNKLWGKASEALEAALKLRPSASD-------YAELADALDQLGEPEEAE 381 (400)
T ss_pred HHHHHHHHHHHhCCCCh---hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhh-------HHHHHHHHHHcCChHHHH
Confidence 11233323 56777788888888888888887766655433333 345677777777777777
Q ss_pred HHHHHHH
Q 004943 632 ENDEYRR 638 (722)
Q Consensus 632 e~~~~~~ 638 (722)
+.++...
T Consensus 382 ~~r~e~L 388 (400)
T COG3071 382 QVRREAL 388 (400)
T ss_pred HHHHHHH
Confidence 7666554
No 95
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.54 E-value=0.035 Score=66.15 Aligned_cols=163 Identities=17% Similarity=0.113 Sum_probs=118.1
Q ss_pred HhhCCHHHHHHHHHHH-------------HHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcch--
Q 004943 419 LTRSGFVEAQEALVQM-------------KNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK-- 483 (722)
Q Consensus 419 l~~g~~~eA~~~l~~A-------------l~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~-- 483 (722)
+..||+..|...+++- +.+...+|+-.....+..-..-+++..+..+|++|.....+..+.....
T Consensus 371 laA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~ 450 (894)
T COG2909 371 LAAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMH 450 (894)
T ss_pred HhCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcc
Confidence 3445555555555444 3345567875556677888889999999999999999998876654442
Q ss_pred ----hHHHHHHHHHHHHHHhcCChhH----HHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004943 484 ----SMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAK 555 (722)
Q Consensus 484 ----~~~A~allnla~v~l~~G~~e~----a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~q 555 (722)
...+-...--|++-+.+|+++. ++.++..+-+. ... -++.++-+.|.+++-.|++.+|+.+.++
T Consensus 451 ~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~------~~~--~r~~~~sv~~~a~~~~G~~~~Al~~~~~ 522 (894)
T COG2909 451 SRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEA------AYR--SRIVALSVLGEAAHIRGELTQALALMQQ 522 (894)
T ss_pred cchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccc------cch--hhhhhhhhhhHHHHHhchHHHHHHHHHH
Confidence 1333333333788888999886 44444443221 111 2778999999999999999999999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHH
Q 004943 556 GLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQA 590 (722)
Q Consensus 556 AL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA 590 (722)
+.++++ +....+...-+...-+.+..++|....|
T Consensus 523 a~~~a~-~~~~~~l~~~~~~~~s~il~~qGq~~~a 556 (894)
T COG2909 523 AEQMAR-QHDVYHLALWSLLQQSEILEAQGQVARA 556 (894)
T ss_pred HHHHHH-HcccHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 999998 5888899999999999999999944333
No 96
>PLN03077 Protein ECB2; Provisional
Probab=97.50 E-value=0.013 Score=72.04 Aligned_cols=124 Identities=11% Similarity=-0.059 Sum_probs=71.0
Q ss_pred HHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh--cch-----
Q 004943 411 LENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKIT--ESK----- 483 (722)
Q Consensus 411 Le~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~--~~~----- 483 (722)
.+.++..+...|++++|.+.+.++. .||. ..++.+...+...|++++|+..|.+-...- .+.
T Consensus 326 ~n~Li~~y~k~g~~~~A~~vf~~m~-----~~d~------~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ 394 (857)
T PLN03077 326 CNSLIQMYLSLGSWGEAEKVFSRME-----TKDA------VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIAS 394 (857)
T ss_pred HHHHHHHHHhcCCHHHHHHHHhhCC-----CCCe------eeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHH
Confidence 3556777777788887777776653 2332 235555566667777777777776532210 000
Q ss_pred --------------------------hHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHH
Q 004943 484 --------------------------SMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYG 537 (722)
Q Consensus 484 --------------------------~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG 537 (722)
..-..+.+.+...|...|+.+.+.+.++.... .+. .+++.+.
T Consensus 395 ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--------~d~----vs~~~mi 462 (857)
T PLN03077 395 VLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE--------KDV----ISWTSII 462 (857)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC--------CCe----eeHHHHH
Confidence 01112334445567777777666666654422 111 2455555
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 004943 538 LLLMRQQDFQEARNRLAKGL 557 (722)
Q Consensus 538 ~~~~~~G~~~eAk~~L~qAL 557 (722)
..+...|++.+|...|++.+
T Consensus 463 ~~~~~~g~~~eA~~lf~~m~ 482 (857)
T PLN03077 463 AGLRLNNRCFEALIFFRQML 482 (857)
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 66667777777777777764
No 97
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.48 E-value=0.0018 Score=58.28 Aligned_cols=104 Identities=13% Similarity=0.149 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHH
Q 004943 451 MIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEA 530 (722)
Q Consensus 451 ~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A 530 (722)
.+.+..|......|++++|...|..++....+......+..++|.++...|+++.+...++.+...+.... . ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~--~----~~ 76 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSP--K----AP 76 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCC--c----cc
Confidence 46788999999999999999999999877655444567788899999999999887777776655422111 1 23
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 004943 531 SLHFAYGLLLMRQQDFQEARNRLAKGLQIA 560 (722)
Q Consensus 531 ~al~~lG~~~~~~G~~~eAk~~L~qAL~la 560 (722)
.+++.+|.++...|++.+|..++.++++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 77 DALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 568889999999999999999999999883
No 98
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.47 E-value=0.0088 Score=65.99 Aligned_cols=234 Identities=19% Similarity=0.147 Sum_probs=144.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHH-----HHHHHHHHHHHHHhhHHHHHhhCCHHHHHHHHHH
Q 004943 359 LFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWM-----AGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQ 433 (722)
Q Consensus 359 ~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~-----~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~~l~~ 433 (722)
+-.+|+|+...+.++|.- |.+++....--|. ++.|.-|-.-+--+.+--++..|++..|++.
T Consensus 375 ~ka~aek~i~ta~kiiap----------vi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aiei--- 441 (840)
T KOG2003|consen 375 NKADAEKAIITAAKIIAP----------VIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEI--- 441 (840)
T ss_pred hhhhHHHHHHHHHHHhcc----------ccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHH---
Confidence 335777888777777321 2233332233343 2334333444445678888999999999876
Q ss_pred HHHHHHhCCchhhhhHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 004943 434 MKNWFIRFPTILQACESMIEMLRGQYAHS-VGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDL 512 (722)
Q Consensus 434 Al~l~~~~~d~~~~~~a~i~~llG~~~~a-lG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l 512 (722)
+..|..-.... ..+-+.++-.++++. -.++..|..+...|+.+-+= -+.++.|-|.+-..-||++.+ ++.
T Consensus 442 -lkv~~~kdnk~--~saaa~nl~~l~flqggk~~~~aqqyad~aln~dry---n~~a~~nkgn~~f~ngd~dka---~~~ 512 (840)
T KOG2003|consen 442 -LKVFEKKDNKT--ASAAANNLCALRFLQGGKDFADAQQYADIALNIDRY---NAAALTNKGNIAFANGDLDKA---AEF 512 (840)
T ss_pred -HHHHHhccchh--hHHHhhhhHHHHHHhcccchhHHHHHHHHHhccccc---CHHHhhcCCceeeecCcHHHH---HHH
Confidence 44566555442 222333333333332 33777777777666643221 134445555444444776542 222
Q ss_pred hcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHH
Q 004943 513 IGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQARE 592 (722)
Q Consensus 513 ~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~ 592 (722)
.++..+... . -+.++|++|..+..+|+.++|.++|-+--.+ + .--+.+|+.++.+|-...++.||.+
T Consensus 513 ykeal~nda--s----c~ealfniglt~e~~~~ldeald~f~klh~i----l---~nn~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 513 YKEALNNDA--S----CTEALFNIGLTAEALGNLDEALDCFLKLHAI----L---LNNAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred HHHHHcCch--H----HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH----H---HhhHHHHHHHHHHHHHhhCHHHHHH
Confidence 222212111 1 2468999999999999999999998665443 2 2246789999999999999999999
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHH
Q 004943 593 ILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMEN 633 (722)
Q Consensus 593 ~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~ 633 (722)
.+.++..+ ++. .-.++.-|+++|...||..+|..+
T Consensus 580 ~~~q~~sl---ip~---dp~ilskl~dlydqegdksqafq~ 614 (840)
T KOG2003|consen 580 LLMQANSL---IPN---DPAILSKLADLYDQEGDKSQAFQC 614 (840)
T ss_pred HHHHhccc---CCC---CHHHHHHHHHHhhcccchhhhhhh
Confidence 99887765 233 234788899999999988887543
No 99
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.47 E-value=0.006 Score=69.32 Aligned_cols=225 Identities=16% Similarity=0.109 Sum_probs=142.0
Q ss_pred HHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHHH
Q 004943 350 VVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQE 429 (722)
Q Consensus 350 s~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~ 429 (722)
-|.-++-.|.+.+|.=.++.|+.. + |+ |---| .-||.++..-++=..|+.
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkq---------d-P~-------haeAW-------------~~LG~~qaENE~E~~ai~ 340 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQ---------D-PQ-------HAEAW-------------QKLGITQAENENEQNAIS 340 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhh---------C-hH-------HHHHH-------------HHhhhHhhhccchHHHHH
Confidence 356667777777777777776654 1 11 01112 235666666666667777
Q ss_pred HHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHH----------------------------------
Q 004943 430 ALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVE---------------------------------- 475 (722)
Q Consensus 430 ~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~---------------------------------- 475 (722)
.+.+|+++ .|+-+ .+++.++..+...|.-.+|+..+..
T Consensus 341 AL~rcl~L---dP~Nl-----eaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~ 412 (579)
T KOG1125|consen 341 ALRRCLEL---DPTNL-----EALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAH 412 (579)
T ss_pred HHHHHHhc---CCccH-----HHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHH
Confidence 76666664 23321 2244444444444544555554443
Q ss_pred -------HHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHH
Q 004943 476 -------AAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQE 548 (722)
Q Consensus 476 -------AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~e 548 (722)
+.+..... .-.-+...||++|...|+++.+-.+++.+..+ .+. -...++.||-..-...+..|
T Consensus 413 i~~~fLeaa~~~~~~-~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v--~Pn-------d~~lWNRLGAtLAN~~~s~E 482 (579)
T KOG1125|consen 413 IQELFLEAARQLPTK-IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV--KPN-------DYLLWNRLGATLANGNRSEE 482 (579)
T ss_pred HHHHHHHHHHhCCCC-CChhHHhhhHHHHhcchHHHHHHHHHHHHHhc--CCc-------hHHHHHHhhHHhcCCcccHH
Confidence 22211110 11234566789988888888877777766554 222 22468889999888888999
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHc---CChh---HHHHHHHHHHHHHH
Q 004943 549 ARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKL---YDIP---TQIWALSVLTALYQ 622 (722)
Q Consensus 549 Ak~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki---~D~~---~q~~al~~L~~l~~ 622 (722)
|...|++||++ + ..-.++..+||--+...|.+++|.+++-+|+.+-++. .+.+ ..+|...- ....
T Consensus 483 AIsAY~rALqL-q------P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR--~als 553 (579)
T KOG1125|consen 483 AISAYNRALQL-Q------PGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLR--LALS 553 (579)
T ss_pred HHHHHHHHHhc-C------CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHH--HHHH
Confidence 99999999999 3 3334688899999999999999999999999999984 2221 23665443 3445
Q ss_pred HcCCchhHh
Q 004943 623 QLGDRGNEM 631 (722)
Q Consensus 623 ~~Gd~~~A~ 631 (722)
..++++...
T Consensus 554 ~~~~~D~l~ 562 (579)
T KOG1125|consen 554 AMNRSDLLQ 562 (579)
T ss_pred HcCCchHHH
Confidence 555555443
No 100
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.43 E-value=0.0021 Score=62.58 Aligned_cols=101 Identities=10% Similarity=-0.099 Sum_probs=82.1
Q ss_pred chhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHH
Q 004943 340 SAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVEL 419 (722)
Q Consensus 340 ~~l~aLvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l 419 (722)
+.+|.+.|. +...|++++|++.++-.... |+. ......+||.|+-
T Consensus 36 ~~lY~~A~~-----ly~~G~l~~A~~~f~~L~~~---------Dp~---------------------~~~y~~gLG~~~Q 80 (157)
T PRK15363 36 NTLYRYAMQ-----LMEVKEFAGAARLFQLLTIY---------DAW---------------------SFDYWFRLGECCQ 80 (157)
T ss_pred HHHHHHHHH-----HHHCCCHHHHHHHHHHHHHh---------Ccc---------------------cHHHHHHHHHHHH
Confidence 456777654 57889999999999988777 222 2333468999999
Q ss_pred hhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcch
Q 004943 420 TRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK 483 (722)
Q Consensus 420 ~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~ 483 (722)
.+|+|.+|+..|..|..+--..| ..+.+.|.++..+|+.+.|..-|+.|+..+++.
T Consensus 81 ~~g~~~~AI~aY~~A~~L~~ddp--------~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~ 136 (157)
T PRK15363 81 AQKHWGEAIYAYGRAAQIKIDAP--------QAPWAAAECYLACDNVCYAIKALKAVVRICGEV 136 (157)
T ss_pred HHhhHHHHHHHHHHHHhcCCCCc--------hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccC
Confidence 99999999999999999754333 448899999999999999999999999887544
No 101
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.40 E-value=0.002 Score=60.19 Aligned_cols=99 Identities=14% Similarity=0.009 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHH
Q 004943 531 SLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQ 610 (722)
Q Consensus 531 ~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q 610 (722)
.++|.+|.++-..|+..+|..+|++|+... +.+ ..-..++..+|..+...|++++|..+++.++. +.+|...-
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~g---L~~-~~~~~a~i~lastlr~LG~~deA~~~L~~~~~---~~p~~~~~ 74 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAG---LSG-ADRRRALIQLASTLRNLGRYDEALALLEEALE---EFPDDELN 74 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCc-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCcccc
Confidence 367889999999999999999999998852 222 23346888999999999999999999998875 44654444
Q ss_pred HHHHHHHHHHHHHcCCchhHhHHHHH
Q 004943 611 IWALSVLTALYQQLGDRGNEMENDEY 636 (722)
Q Consensus 611 ~~al~~L~~l~~~~Gd~~~A~e~~~~ 636 (722)
......++.+....|++++|.+.+-.
T Consensus 75 ~~l~~f~Al~L~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 75 AALRVFLALALYNLGRPKEALEWLLE 100 (120)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55667777888999999999876543
No 102
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.40 E-value=0.036 Score=64.19 Aligned_cols=110 Identities=16% Similarity=0.195 Sum_probs=72.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChh---
Q 004943 532 LHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIP--- 608 (722)
Q Consensus 532 al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~--- 608 (722)
.+...|.++-+.|++.+|...+..|-.+ ...||.+-+ --+.-.++.|+.++|++++ .++.+-++-+
T Consensus 230 ly~~KarilKh~G~~~~Aa~~~~~Ar~L---D~~DRyiNs----K~aKy~LRa~~~e~A~~~~----~~Ftr~~~~~~~~ 298 (517)
T PF12569_consen 230 LYMTKARILKHAGDLKEAAEAMDEAREL---DLADRYINS----KCAKYLLRAGRIEEAEKTA----SLFTREDVDPLSN 298 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhC---ChhhHHHHH----HHHHHHHHCCCHHHHHHHH----HhhcCCCCCcccC
Confidence 4555566666666666666666666555 234433322 2334455556666665542 2333333111
Q ss_pred ----HHHHHHHHHHHHHHHcCCchhHhHHHHHHHHHHHHHhHHHHHhh
Q 004943 609 ----TQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDELQKRLADAY 652 (722)
Q Consensus 609 ----~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~l~~~~~~a~ 652 (722)
.=+|-...-|+.|...|+++.|+..|....+.++++..+++.=+
T Consensus 299 L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH 346 (517)
T PF12569_consen 299 LNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFH 346 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHH
Confidence 23788899999999999999999999999999999999998754
No 103
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.39 E-value=0.0012 Score=54.61 Aligned_cols=93 Identities=17% Similarity=0.106 Sum_probs=72.9
Q ss_pred HHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHH
Q 004943 411 LENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCH 490 (722)
Q Consensus 411 Le~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~al 490 (722)
+.++|.++..+|++++|.+.+.++++.. |+. ..+++.+|.++...|++++|...|+.+++...... .+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~-----~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~ 71 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD---PDN-----ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA---KAY 71 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC---Ccc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch---hHH
Confidence 3567899999999999999999998763 222 25688899999999999999999998887654433 566
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhc
Q 004943 491 AYAAVSYFCIGDAESSSQAIDLIG 514 (722)
Q Consensus 491 lnla~v~l~~G~~e~a~~aL~l~~ 514 (722)
.++|.++...|+++.+...+..+.
T Consensus 72 ~~~~~~~~~~~~~~~a~~~~~~~~ 95 (100)
T cd00189 72 YNLGLAYYKLGKYEEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 778889988888877666555443
No 104
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.38 E-value=0.031 Score=57.83 Aligned_cols=229 Identities=14% Similarity=0.051 Sum_probs=152.1
Q ss_pred ccCcchhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhH
Q 004943 336 WLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKV 415 (722)
Q Consensus 336 WLpk~~l~aLvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg 415 (722)
|=|..+--+=.|.=..+.++....|++|--++.+|.+- .+. + +..|++ +-..|..+
T Consensus 23 wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~----yEn-----n--------rslfhA-------AKayEqaa 78 (308)
T KOG1585|consen 23 WKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKG----YEN-----N--------RSLFHA-------AKAYEQAA 78 (308)
T ss_pred cCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHH----HHh-----c--------ccHHHH-------HHHHHHHH
Confidence 66666666777888899999999999999999988866 221 1 334532 33447889
Q ss_pred HHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcch--hHHHHHH-HH
Q 004943 416 AVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK--SMQAMCH-AY 492 (722)
Q Consensus 416 ~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~--~~~A~al-ln 492 (722)
++.-....|.|+...+++|..++.+.|.. ...+..+--.|.. ..--+.+.|+.+|++++...... ...++=+ .-
T Consensus 79 mLake~~klsEvvdl~eKAs~lY~E~Gsp--dtAAmaleKAak~-lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk 155 (308)
T KOG1585|consen 79 MLAKELSKLSEVVDLYEKASELYVECGSP--DTAAMALEKAAKA-LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGK 155 (308)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCCc--chHHHHHHHHHHH-hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 99999999999999999999999997654 1233444444443 33447899999999998776433 3344332 33
Q ss_pred HHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHH
Q 004943 493 AAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQ 572 (722)
Q Consensus 493 la~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~ 572 (722)
.+.++.+...++++.-++-.-...+..+..++.. .+ .+...-.+|....+|.+|+..++..-++-. . +..-.+.
T Consensus 156 ~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~-~k--~~va~ilv~L~~~Dyv~aekc~r~~~qip~--f-~~sed~r 229 (308)
T KOG1585|consen 156 CSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQ-CK--AYVAAILVYLYAHDYVQAEKCYRDCSQIPA--F-LKSEDSR 229 (308)
T ss_pred hhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccH-HH--HHHHHHHHHhhHHHHHHHHHHhcchhcCcc--c-cChHHHH
Confidence 3666666555666444443333333333322211 22 333444667788999999999999877732 2 2355666
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHH
Q 004943 573 YLTILGNLALALHDTVQAREILRSSL 598 (722)
Q Consensus 573 ~L~~LG~~~~a~g~~~qA~~~l~~Al 598 (722)
++-+|=. .+..||.++.-+++.+..
T Consensus 230 ~lenLL~-ayd~gD~E~~~kvl~sp~ 254 (308)
T KOG1585|consen 230 SLENLLT-AYDEGDIEEIKKVLSSPT 254 (308)
T ss_pred HHHHHHH-HhccCCHHHHHHHHcChH
Confidence 7777744 567799999998876553
No 105
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.37 E-value=0.0006 Score=56.33 Aligned_cols=94 Identities=22% Similarity=0.183 Sum_probs=76.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHH
Q 004943 532 LHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQI 611 (722)
Q Consensus 532 al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~ 611 (722)
+++.+|..+..+|++.+|...++++++.... + ..+...+|.++...|++++|.+.+..++.+....+
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~------ 68 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPD---N----ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA------ 68 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCc---c----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch------
Confidence 4678899999999999999999999887321 1 15788999999999999999999999988653332
Q ss_pred HHHHHHHHHHHHcCCchhHhHHHHHHH
Q 004943 612 WALSVLTALYQQLGDRGNEMENDEYRR 638 (722)
Q Consensus 612 ~al~~L~~l~~~~Gd~~~A~e~~~~~~ 638 (722)
.+...++.++...|++++|...++...
T Consensus 69 ~~~~~~~~~~~~~~~~~~a~~~~~~~~ 95 (100)
T cd00189 69 KAYYNLGLAYYKLGKYEEALEAYEKAL 95 (100)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 567788899999999999988776654
No 106
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.32 E-value=0.0011 Score=54.66 Aligned_cols=65 Identities=23% Similarity=0.307 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHH
Q 004943 529 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALH-DTVQAREILRSSLTL 600 (722)
Q Consensus 529 ~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g-~~~qA~~~l~~Al~l 600 (722)
.|.+++.+|..++..|++.+|..+|.+|+++. ...+.++..+|.++...| ++++|.+.++.|+.+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-------p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-------PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-------TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 36789999999999999999999999999982 223569999999999999 799999999999875
No 107
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.31 E-value=0.042 Score=57.55 Aligned_cols=174 Identities=15% Similarity=0.053 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHH
Q 004943 449 ESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVRE 528 (722)
Q Consensus 449 ~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~ 528 (722)
.+...+..|.-....|+|++|...|++.+...........+..++|.+|...|+++.+...++.+...+-.+. .
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~------~ 104 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP------N 104 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCC------c
Confidence 3456888999999999999999999999888777777777889999999999999887777776655533332 1
Q ss_pred HHHHHHHHHHHHHhcC---------------CHHH---HHHHHHHHHHHHHHhcCChH--------------HHHHHHHH
Q 004943 529 EASLHFAYGLLLMRQQ---------------DFQE---ARNRLAKGLQIAHNHMGNLQ--------------LVSQYLTI 576 (722)
Q Consensus 529 ~A~al~~lG~~~~~~G---------------~~~e---Ak~~L~qAL~la~~~~gd~~--------------l~a~~L~~ 576 (722)
...+++.+|..+...+ +... |...|++-++. -.|.. ..+.--..
T Consensus 105 ~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~----yP~S~ya~~A~~rl~~l~~~la~~e~~ 180 (243)
T PRK10866 105 IDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG----YPNSQYTTDATKRLVFLKDRLAKYELS 180 (243)
T ss_pred hHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH----CcCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788887654443 3333 44555544432 22211 12222335
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHH
Q 004943 577 LGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDE 635 (722)
Q Consensus 577 LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~ 635 (722)
.|..|+..|.+..|..-++..+. +-++-+..-.++..+.+.|...|..+.|.....
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~---~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLR---DYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHH---HCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 67789999999888877766655 445555567799999999999999999887543
No 108
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.29 E-value=0.00059 Score=56.21 Aligned_cols=63 Identities=19% Similarity=0.144 Sum_probs=55.0
Q ss_pred HHHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHh
Q 004943 409 QFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVG-CYSEAAFHYVEAAKI 479 (722)
Q Consensus 409 ~lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG-~~~~Al~~f~~AL~l 479 (722)
..+.++|.++...|+|++|++.|.+++++. |+ .+.+++++|.++..+| ++++|+..|++++.+
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~---p~-----~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD---PN-----NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS---TT-----HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CC-----CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 345678999999999999999999999973 33 3467999999999999 899999999999875
No 109
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.27 E-value=0.043 Score=60.18 Aligned_cols=209 Identities=15% Similarity=0.144 Sum_probs=138.5
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhC
Q 004943 343 YALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRS 422 (722)
Q Consensus 343 ~aLvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g 422 (722)
...|++-.+-....+|+++-|.......+++ .+. .-.+|.-...+|...|
T Consensus 152 ~l~v~ltrarlll~~~d~~aA~~~v~~ll~~----------~pr--------------------~~~vlrLa~r~y~~~g 201 (400)
T COG3071 152 TLAVELTRARLLLNRRDYPAARENVDQLLEM----------TPR--------------------HPEVLRLALRAYIRLG 201 (400)
T ss_pred hHHHHHHHHHHHHhCCCchhHHHHHHHHHHh----------CcC--------------------ChHHHHHHHHHHHHhc
Confidence 4567888888888899888887776666665 111 1111122344455555
Q ss_pred CHHHHHHHHHHH-----------------------------------HHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHH
Q 004943 423 GFVEAQEALVQM-----------------------------------KNWFIRFPTILQACESMIEMLRGQYAHSVGCYS 467 (722)
Q Consensus 423 ~~~eA~~~l~~A-----------------------------------l~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~ 467 (722)
+|.+....+... ..+.++.|+... ..+-+-.-........|+++
T Consensus 202 ~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr-~~p~l~~~~a~~li~l~~~~ 280 (400)
T COG3071 202 AWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLR-NDPELVVAYAERLIRLGDHD 280 (400)
T ss_pred cHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhh-cChhHHHHHHHHHHHcCChH
Confidence 555444333222 224444555332 33555566677778899999
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHH
Q 004943 468 EAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQ 547 (722)
Q Consensus 468 ~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~ 547 (722)
+|...-.++++...|.....+ +-.+..|+++...++++.... .+++ ....+..+|..++..+.+.
T Consensus 281 ~A~~~i~~~Lk~~~D~~L~~~------~~~l~~~d~~~l~k~~e~~l~---~h~~------~p~L~~tLG~L~~k~~~w~ 345 (400)
T COG3071 281 EAQEIIEDALKRQWDPRLCRL------IPRLRPGDPEPLIKAAEKWLK---QHPE------DPLLLSTLGRLALKNKLWG 345 (400)
T ss_pred HHHHHHHHHHHhccChhHHHH------HhhcCCCCchHHHHHHHHHHH---hCCC------ChhHHHHHHHHHHHhhHHH
Confidence 999999999988777652211 123455677765555553322 2222 2256889999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcC
Q 004943 548 EARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLY 605 (722)
Q Consensus 548 eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~ 605 (722)
+|..+|+.|++.. ..+.....+|.++...|++++|.++.+.|+.+...-+
T Consensus 346 kA~~~leaAl~~~--------~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 346 KASEALEAALKLR--------PSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred HHHHHHHHHHhcC--------CChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 9999999888872 2235677899999999999999999999997665443
No 110
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.0052 Score=67.41 Aligned_cols=62 Identities=16% Similarity=0.124 Sum_probs=49.2
Q ss_pred hHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcch
Q 004943 414 KVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK 483 (722)
Q Consensus 414 Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~ 483 (722)
.+-|....|++++|+..-...+.+ .+. -.-.+++.|.+..+.++.+.|..||+++|++-.+.
T Consensus 175 ka~cl~~~~~~~~a~~ea~~ilkl---d~~-----n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh 236 (486)
T KOG0550|consen 175 KAECLAFLGDYDEAQSEAIDILKL---DAT-----NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDH 236 (486)
T ss_pred hhhhhhhcccchhHHHHHHHHHhc---ccc-----hhHHHHhcccccccccchHHHHHHHhhhhccChhh
Confidence 577888999999999876555553 222 34568999999999999999999999999875443
No 111
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.19 E-value=0.044 Score=55.64 Aligned_cols=173 Identities=14% Similarity=0.114 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHH
Q 004943 450 SMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREE 529 (722)
Q Consensus 450 a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~ 529 (722)
+..++..|.-....|+|++|...|...............+.+.+|.++...|+++.+...++.+...+-.+. . .
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~----~--~ 78 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP----K--A 78 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T----T--H
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc----c--h
Confidence 466889999999999999999999988887777667777889999999999999888888877665533332 1 3
Q ss_pred HHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHHH---------HHhcCC-hHHHHHHHHHHHHHHHhCCChH
Q 004943 530 ASLHFAYGLLLMRQQ-----------DFQEARNRLAKGLQIA---------HNHMGN-LQLVSQYLTILGNLALALHDTV 588 (722)
Q Consensus 530 A~al~~lG~~~~~~G-----------~~~eAk~~L~qAL~la---------~~~~gd-~~l~a~~L~~LG~~~~a~g~~~ 588 (722)
..+++.+|..+..+. ...+|...+++-++.. +..+.. +...+.--..+|..|+..|.+.
T Consensus 79 ~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~ 158 (203)
T PF13525_consen 79 DYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYK 158 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HH
T ss_pred hhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH
Confidence 457777777765433 2346777776665431 110001 2233344456788999999999
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHh
Q 004943 589 QAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEM 631 (722)
Q Consensus 589 qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~ 631 (722)
.|...++..+ ++-+|....-.++..|.+.|...|..+.|.
T Consensus 159 aA~~r~~~v~---~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 159 AAIIRFQYVI---ENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHH---HHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHH---HHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 9988877755 455666666779999999999999888443
No 112
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.071 Score=60.46 Aligned_cols=248 Identities=17% Similarity=0.126 Sum_probs=160.2
Q ss_pred HHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHHHH
Q 004943 351 VILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEA 430 (722)
Q Consensus 351 ~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~~ 430 (722)
+-..+..|+|++|..++.+|+.+ ++.+ -.+..|-..++...|+|.+|++-
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l---------~p~n---------------------hvlySnrsaa~a~~~~~~~al~d 58 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIML---------SPTN---------------------HVLYSNRSAAYASLGSYEKALKD 58 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHcc---------CCCc---------------------cchhcchHHHHHHHhhHHHHHHH
Confidence 34456789999999999999988 2222 23346778899999999999998
Q ss_pred HHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchh----HHHHHHHHH--H-------HHH
Q 004943 431 LVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS----MQAMCHAYA--A-------VSY 497 (722)
Q Consensus 431 l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~----~~A~allnl--a-------~v~ 497 (722)
-.++.++. |+. +-.+...|.-+..+|+|++|..-|.+.|..-.+.. |.+.+..-. + ..|
T Consensus 59 a~k~~~l~---p~w-----~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~ 130 (539)
T KOG0548|consen 59 ATKTRRLN---PDW-----AKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFH 130 (539)
T ss_pred HHHHHhcC---Cch-----hhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHH
Confidence 88877765 443 23378899999999999999999999887543321 222221000 0 000
Q ss_pred ------------------------HhcCC-------hhH-HHHHHHHhc--------------------chhcccccc--
Q 004943 498 ------------------------FCIGD-------AES-SSQAIDLIG--------------------PVYQMKDTI-- 523 (722)
Q Consensus 498 ------------------------l~~G~-------~e~-a~~aL~l~~--------------------~l~r~~~~~-- 523 (722)
+..+. .++ ...++-.+. |-...+...
T Consensus 131 ~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 210 (539)
T KOG0548|consen 131 EKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPI 210 (539)
T ss_pred HHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCc
Confidence 00000 000 111111110 000000000
Q ss_pred -cC------hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHH
Q 004943 524 -NG------VREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRS 596 (722)
Q Consensus 524 -~~------~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~ 596 (722)
.+ ...+|...-.+|......-++..|..++..++.+. ..++.....+.++..+|......++.+.|.+--+.
T Consensus 211 ~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre 289 (539)
T KOG0548|consen 211 IEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE 289 (539)
T ss_pred cchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH
Confidence 01 11247788899999999999999999999999997 56877777777777777766666666666665555
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHHHHHH
Q 004943 597 SLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDE 643 (722)
Q Consensus 597 Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~ 643 (722)
.....+- ...+...+|..|...|+++.+..+|+......+.
T Consensus 290 ~rad~kl------Iak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt 330 (539)
T KOG0548|consen 290 LRADYKL------IAKALARLGNAYTKREDYEGAIKYYQKALTEHRT 330 (539)
T ss_pred HHHHHHH------HHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC
Confidence 5555544 3445556788898999999999888886554443
No 113
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.18 E-value=0.0056 Score=56.91 Aligned_cols=97 Identities=12% Similarity=-0.023 Sum_probs=71.0
Q ss_pred HHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHH
Q 004943 349 MVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQ 428 (722)
Q Consensus 349 ls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~ 428 (722)
.-+..+...|++++|...+++++.. ++.. ..+..++|.++...|++++|.
T Consensus 22 ~~a~~~~~~~~~~~A~~~~~~~~~~---------~p~~---------------------~~~~~~la~~~~~~~~~~~A~ 71 (135)
T TIGR02552 22 ALAYNLYQQGRYDEALKLFQLLAAY---------DPYN---------------------SRYWLGLAACCQMLKEYEEAI 71 (135)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHh---------CCCc---------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 3355566778889988888777665 1111 112245788999999999999
Q ss_pred HHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcch
Q 004943 429 EALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK 483 (722)
Q Consensus 429 ~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~ 483 (722)
+.+.+++.+. |+. ...++.+|.++...|++++|+..|+.+++...+.
T Consensus 72 ~~~~~~~~~~---p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 72 DAYALAAALD---PDD-----PRPYFHAAECLLALGEPESALKALDLAIEICGEN 118 (135)
T ss_pred HHHHHHHhcC---CCC-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 9999888864 332 3447889999999999999999998888776543
No 114
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.13 E-value=0.0072 Score=56.46 Aligned_cols=103 Identities=16% Similarity=0.010 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHH
Q 004943 451 MIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEA 530 (722)
Q Consensus 451 ~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A 530 (722)
.+++..+..+.++|+.++|..+|++++..--+.....-++.++|.++...|+++++...|+..... .+++. .....
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~--~~~~l 77 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDE--LNAAL 77 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcc--ccHHH
Confidence 468899999999999999999999998753233355678889999999999999877777654332 12211 11233
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 004943 531 SLHFAYGLLLMRQQDFQEARNRLAKGLQI 559 (722)
Q Consensus 531 ~al~~lG~~~~~~G~~~eAk~~L~qAL~l 559 (722)
.++ ++.+....|++.+|...+-++|.-
T Consensus 78 ~~f--~Al~L~~~gr~~eAl~~~l~~la~ 104 (120)
T PF12688_consen 78 RVF--LALALYNLGRPKEALEWLLEALAE 104 (120)
T ss_pred HHH--HHHHHHHCCCHHHHHHHHHHHHHH
Confidence 444 556668899999999999888754
No 115
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.13 E-value=0.0078 Score=69.73 Aligned_cols=150 Identities=11% Similarity=0.055 Sum_probs=98.6
Q ss_pred hHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCCh----h-HHHHHHHHhcchhcc
Q 004943 448 CESMIEMLRGQYAHSVGC---YSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDA----E-SSSQAIDLIGPVYQM 519 (722)
Q Consensus 448 ~~a~i~~llG~~~~alG~---~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~----e-~a~~aL~l~~~l~r~ 519 (722)
..+.-+++.|..+...+. ++.|..+|++|+.+-.+. +.++..++++|.....+ + ....+.+.+......
T Consensus 337 ~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~---a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 337 GAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDF---TYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 366778888887766654 889999999999875544 22222223433322111 1 123333333221111
Q ss_pred cccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 004943 520 KDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLT 599 (722)
Q Consensus 520 ~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~ 599 (722)
..+.. ...++..+|.++..+|++++|..++++|+.+ + . .+.++..+|.++...|++++|.+.++.|+.
T Consensus 414 ~~~~~----~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L-~----p---s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 414 PELNV----LPRIYEILAVQALVKGKTDEAYQAINKAIDL-E----M---SWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred ccCcC----ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-C----C---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 11111 2356778888888999999999999999998 2 1 157999999999999999999999999977
Q ss_pred HHHHcCChhHHHHHHH
Q 004943 600 LAKKLYDIPTQIWALS 615 (722)
Q Consensus 600 lAkki~D~~~q~~al~ 615 (722)
+. +..++..|+-+
T Consensus 482 L~---P~~pt~~~~~~ 494 (517)
T PRK10153 482 LR---PGENTLYWIEN 494 (517)
T ss_pred cC---CCCchHHHHHh
Confidence 64 44444555554
No 116
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.09 E-value=0.0028 Score=59.00 Aligned_cols=99 Identities=14% Similarity=0.034 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhH
Q 004943 530 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPT 609 (722)
Q Consensus 530 A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~ 609 (722)
+.+.+.+|..+...|++.+|...+++++.+ . -. ...+...+|.++...|++++|.+.+++++.+. ++.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~--p~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---p~~-- 84 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAY-D--PY----NSRYWLGLAACCQMLKEYEEAIDAYALAAALD---PDD-- 84 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHh-C--CC----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCC--
Confidence 466889999999999999999999998876 2 11 24677899999999999999999999988864 221
Q ss_pred HHHHHHHHHHHHHHcCCchhHhHHHHHHHHHH
Q 004943 610 QIWALSVLTALYQQLGDRGNEMENDEYRRKKL 641 (722)
Q Consensus 610 q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~ 641 (722)
.-....++.+|...|++++|...++...+.-
T Consensus 85 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 85 -PRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred -hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3355778999999999999999887776653
No 117
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.09 E-value=0.0054 Score=63.80 Aligned_cols=123 Identities=20% Similarity=0.204 Sum_probs=93.5
Q ss_pred hHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 004943 414 KVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYA 493 (722)
Q Consensus 414 Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnl 493 (722)
+|......|+|.+|+..+.++..+- |+ .+-.++.+|..+...|++++|..-|.+++++.... ....+|+
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l~---p~-----d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~---p~~~nNl 174 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARLA---PT-----DWEAWNLLGAALDQLGRFDEARRAYRQALELAPNE---PSIANNL 174 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhccC---CC-----ChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCC---chhhhhH
Confidence 6999999999999999999988853 22 34669999999999999999999999999886543 4567999
Q ss_pred HHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004943 494 AVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKG 556 (722)
Q Consensus 494 a~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qA 556 (722)
|+.|+-.||.+.+...|... +.... .+. .+-.+++.+.-.+|++.+|++.-.+=
T Consensus 175 gms~~L~gd~~~A~~lll~a---~l~~~--ad~----~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 175 GMSLLLRGDLEDAETLLLPA---YLSPA--ADS----RVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred HHHHHHcCCHHHHHHHHHHH---HhCCC--Cch----HHHHHHHHHHhhcCChHHHHhhcccc
Confidence 99999989988766666433 22222 112 24455666667899999998765443
No 118
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.09 E-value=0.025 Score=64.63 Aligned_cols=179 Identities=19% Similarity=0.156 Sum_probs=117.6
Q ss_pred HhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHH
Q 004943 412 ENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHA 491 (722)
Q Consensus 412 e~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~all 491 (722)
...+.|....+..|+|++.+. .+++.++ .++.+.++++..+|+|++|+..|+.-++-..+......-.+
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~----~~~~~~~-------~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~n 151 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK----GLDRLDD-------KLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRAN 151 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh----cccccch-------HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 457899999999999999977 4444444 35778899999999999999999744443322222211111
Q ss_pred HHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC--ChH-
Q 004943 492 YAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMG--NLQ- 568 (722)
Q Consensus 492 nla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~g--d~~- 568 (722)
.++.+-.. ..+.+.. .|... .+.+ ..+|+.++++...|+|++|.+.|+.|+++.++.+. |.-
T Consensus 152 l~a~~a~l------~~~~~q~-v~~v~--e~sy------el~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~e 216 (652)
T KOG2376|consen 152 LLAVAAAL------QVQLLQS-VPEVP--EDSY------ELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNE 216 (652)
T ss_pred HHHHHHhh------hHHHHHh-ccCCC--cchH------HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccch
Confidence 11211100 0111222 23211 1112 35788999999999999999999999888776332 222
Q ss_pred -----HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 004943 569 -----LVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLT 618 (722)
Q Consensus 569 -----l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~ 618 (722)
-...+...|+-++..+|+++||...+.. -+.++-.|.+..+-+.++|-
T Consensus 217 Eeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~--~i~~~~~D~~~~Av~~NNLv 269 (652)
T KOG2376|consen 217 EEIEEELNPIRVQLAYVLQLQGQTAEASSIYVD--IIKRNPADEPSLAVAVNNLV 269 (652)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH--HHHhcCCCchHHHHHhcchh
Confidence 2345778889999999999999987754 34566677766666666553
No 119
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.0083 Score=65.84 Aligned_cols=191 Identities=14% Similarity=0.103 Sum_probs=132.3
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 004943 415 VAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAA 494 (722)
Q Consensus 415 g~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla 494 (722)
+.+.+.+-++..|+-..+.++..-.+.- ..+.+-|.....+|+.++|.-+|+.|..+...+ --|.-.+-
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~--------~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~r---L~~Y~GL~ 375 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPRNH--------EALILKGRLLIALERHTQAVIAFRTAQMLAPYR---LEIYRGLF 375 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcccc--------hHHHhccHHHHhccchHHHHHHHHHHHhcchhh---HHHHHHHH
Confidence 5566777788888888877776533321 236678899999999999999999887765332 12223333
Q ss_pred HHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHH-HHHHhcCC-HHHHHHHHHHHHHHHHHhcCChHHHHH
Q 004943 495 VSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYG-LLLMRQQD-FQEARNRLAKGLQIAHNHMGNLQLVSQ 572 (722)
Q Consensus 495 ~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG-~~~~~~G~-~~eAk~~L~qAL~la~~~~gd~~l~a~ 572 (722)
.+|+..|. ..+|+..++..++..+++ |.++..+| .+++...+ -+.||.++.++|++ + .+---
T Consensus 376 hsYLA~~~---~kEA~~~An~~~~~~~~s------A~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~-~------P~Y~~ 439 (564)
T KOG1174|consen 376 HSYLAQKR---FKEANALANWTIRLFQNS------ARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI-N------PIYTP 439 (564)
T ss_pred HHHHhhch---HHHHHHHHHHHHHHhhcc------hhhhhhhcceeeccCchhHHHHHHHHHhhhcc-C------CccHH
Confidence 44556554 455555566655544322 34555565 66666555 45699999999988 2 12223
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHH
Q 004943 573 YLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRK 639 (722)
Q Consensus 573 ~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~ 639 (722)
+.+.+++++...|.++.+.+.++.++... +| .--++.||++.++...+++|+++|..+.+
T Consensus 440 AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~---~D----~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 440 AVNLIAELCQVEGPTKDIIKLLEKHLIIF---PD----VNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHhhc---cc----cHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 56788899999999999999999988643 33 33568899999999999999998887764
No 120
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.06 E-value=0.018 Score=64.53 Aligned_cols=133 Identities=14% Similarity=0.123 Sum_probs=94.2
Q ss_pred hhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchh---HHHHH
Q 004943 413 NKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS---MQAMC 489 (722)
Q Consensus 413 ~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~---~~A~a 489 (722)
.++++..+++.++++.+.|+++..-|-+.| -+++.-|.+..-.++++.|..+|..|+.+-.... .-+.-
T Consensus 433 Ql~~a~Yr~~k~~~~m~~Fee~kkkFP~~~--------Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~p 504 (606)
T KOG0547|consen 433 QLCCALYRQHKIAESMKTFEEAKKKFPNCP--------EVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAP 504 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCc--------hHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchh
Confidence 368888888899999999998887554333 3478888999999999999999999988765532 11222
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 004943 490 HAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEA-SLHFAYGLLLMRQQDFQEARNRLAKGLQIAHN 562 (722)
Q Consensus 490 llnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A-~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~ 562 (722)
+++=|++.++. .+...+++.+++..+. .+. ++ .++-.+|.+-..+|+.++|..+|+++..+|+.
T Consensus 505 lV~Ka~l~~qw--k~d~~~a~~Ll~KA~e-----~Dp--kce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 505 LVHKALLVLQW--KEDINQAENLLRKAIE-----LDP--KCEQAYETLAQFELQRGKIDEAIELFEKSAQLART 569 (606)
T ss_pred hhhhhHhhhch--hhhHHHHHHHHHHHHc-----cCc--hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 33334443331 1336666666554433 222 32 36788999999999999999999999999874
No 121
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.05 E-value=0.022 Score=56.72 Aligned_cols=155 Identities=15% Similarity=0.101 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHH
Q 004943 429 EALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQ 508 (722)
Q Consensus 429 ~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~ 508 (722)
++++++.+-+...|.. .-.+.+|.-....|++.+|..||++++.-. ..+.+..++.++...+..|++..+..
T Consensus 74 R~~Rea~~~~~~ApTv------qnr~rLa~al~elGr~~EA~~hy~qalsG~--fA~d~a~lLglA~Aqfa~~~~A~a~~ 145 (251)
T COG4700 74 RHLREATEELAIAPTV------QNRYRLANALAELGRYHEAVPHYQQALSGI--FAHDAAMLLGLAQAQFAIQEFAAAQQ 145 (251)
T ss_pred HHHHHHHHHHhhchhH------HHHHHHHHHHHHhhhhhhhHHHHHHHhccc--cCCCHHHHHHHHHHHHhhccHHHHHH
Confidence 3455555555566664 236778888899999999999999988421 11234445666677777788887777
Q ss_pred HHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChH
Q 004943 509 AIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTV 588 (722)
Q Consensus 509 aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~ 588 (722)
.|+-+.+.. .... .....+.+|.++..+|++.+|+.-|+.++.-.. +.+..+ .-++...++|+..
T Consensus 146 tLe~l~e~~---pa~r----~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp----g~~ar~----~Y~e~La~qgr~~ 210 (251)
T COG4700 146 TLEDLMEYN---PAFR----SPDGHLLFARTLAAQGKYADAESAFEVAISYYP----GPQARI----YYAEMLAKQGRLR 210 (251)
T ss_pred HHHHHhhcC---CccC----CCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC----CHHHHH----HHHHHHHHhcchh
Confidence 777654431 1111 123456678888999999999999999987732 224433 3466778899988
Q ss_pred HHHHHHHHHHHHHHHcCC
Q 004943 589 QAREILRSSLTLAKKLYD 606 (722)
Q Consensus 589 qA~~~l~~Al~lAkki~D 606 (722)
+|..-+..-.+-+++..-
T Consensus 211 ea~aq~~~v~d~~~r~~~ 228 (251)
T COG4700 211 EANAQYVAVVDTAKRSRP 228 (251)
T ss_pred HHHHHHHHHHHHHHhcch
Confidence 888777776666665544
No 122
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.04 E-value=0.073 Score=63.50 Aligned_cols=235 Identities=17% Similarity=0.110 Sum_probs=147.7
Q ss_pred HHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHHHH
Q 004943 351 VILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEA 430 (722)
Q Consensus 351 ~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~~ 430 (722)
+..+...|+++.|.-|+.+|+.+ .++. .+-+| .-+.++-..|+...|.+.
T Consensus 214 adls~~~~~i~qA~~cy~rAI~~---------~p~n-------~~~~~--------------ers~L~~~~G~~~~Am~~ 263 (895)
T KOG2076|consen 214 ADLSEQLGNINQARYCYSRAIQA---------NPSN-------WELIY--------------ERSSLYQKTGDLKRAMET 263 (895)
T ss_pred HHHHHhcccHHHHHHHHHHHHhc---------CCcc-------hHHHH--------------HHHHHHHHhChHHHHHHH
Confidence 34556778899999999999988 1121 12233 346777888999999999
Q ss_pred HHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhH-----
Q 004943 431 LVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----- 505 (722)
Q Consensus 431 l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~----- 505 (722)
+.+++.++- |.-...+...+.. ..+|....+.-+.|+..+..++..-.+....... +-++.+++....++.
T Consensus 264 f~~l~~~~p--~~d~er~~d~i~~-~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~-ni~ael~l~~~q~d~~~~~i 339 (895)
T KOG2076|consen 264 FLQLLQLDP--PVDIERIEDLIRR-VAHYFITHNERERAAKALEGALSKEKDEASLEDL-NILAELFLKNKQSDKALMKI 339 (895)
T ss_pred HHHHHhhCC--chhHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHhhccccccccHH-HHHHHHHHHhHHHHHhhHHH
Confidence 999887654 2222223333333 3455556666688888888777632222100000 000111111000000
Q ss_pred -------------------------------------------------------HHHHHHHhcchhcccccccChHHHH
Q 004943 506 -------------------------------------------------------SSQAIDLIGPVYQMKDTINGVREEA 530 (722)
Q Consensus 506 -------------------------------------------------------a~~aL~l~~~l~r~~~~~~~~~~~A 530 (722)
...++.-..+.. ....-...
T Consensus 340 ~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~-----n~~~~d~~ 414 (895)
T KOG2076|consen 340 VDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVED-----NVWVSDDV 414 (895)
T ss_pred HHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHh-----cCChhhhH
Confidence 001111000100 00011234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHH
Q 004943 531 SLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQ 610 (722)
Q Consensus 531 ~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q 610 (722)
.-++.++.++...|++.+|.++|.....- -++ ..+-+...+|..|...|.+++|...+..++.++-.--|
T Consensus 415 dL~~d~a~al~~~~~~~~Al~~l~~i~~~----~~~--~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D---- 484 (895)
T KOG2076|consen 415 DLYLDLADALTNIGKYKEALRLLSPITNR----EGY--QNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLD---- 484 (895)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhcC----ccc--cchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchh----
Confidence 56888999999999999999999887554 222 12668899999999999999999999999998754444
Q ss_pred HHHHHHHHHHHHHcCCchhHhHHHHH
Q 004943 611 IWALSVLTALYQQLGDRGNEMENDEY 636 (722)
Q Consensus 611 ~~al~~L~~l~~~~Gd~~~A~e~~~~ 636 (722)
+...|+.+|...|++++|.+..+.
T Consensus 485 --~Ri~Lasl~~~~g~~EkalEtL~~ 508 (895)
T KOG2076|consen 485 --ARITLASLYQQLGNHEKALETLEQ 508 (895)
T ss_pred --hhhhHHHHHHhcCCHHHHHHHHhc
Confidence 778899999999999999887776
No 123
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.03 E-value=0.24 Score=51.77 Aligned_cols=166 Identities=17% Similarity=0.187 Sum_probs=116.1
Q ss_pred HHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHH
Q 004943 410 FLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMC 489 (722)
Q Consensus 410 lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~a 489 (722)
+++.+..+.+..|+.+.|..++.+...-| |.- ..+..+-|+...++|++++|...|..-+ ..++...++=
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~f---p~S-----~RV~~lkam~lEa~~~~~~A~e~y~~lL--~ddpt~~v~~ 123 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRF---PGS-----KRVGKLKAMLLEATGNYKEAIEYYESLL--EDDPTDTVIR 123 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhC---CCC-----hhHHHHHHHHHHHhhchhhHHHHHHHHh--ccCcchhHHH
Confidence 44677888899999999999999877755 432 3457788999999999999999996433 2333344444
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHH
Q 004943 490 HAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQL 569 (722)
Q Consensus 490 llnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l 569 (722)
..-+|++-- +|..-++-+.+.-....+ . . -..++.-++.+|+..|++.+|.=+|++.+=+ . =-|
T Consensus 124 KRKlAilka-~GK~l~aIk~ln~YL~~F--~---~----D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~-~--P~n--- 187 (289)
T KOG3060|consen 124 KRKLAILKA-QGKNLEAIKELNEYLDKF--M---N----DQEAWHELAEIYLSEGDFEKAAFCLEELLLI-Q--PFN--- 187 (289)
T ss_pred HHHHHHHHH-cCCcHHHHHHHHHHHHHh--c---C----cHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc-C--CCc---
Confidence 455555543 477655444444333321 1 1 1257888999999999999999999998876 2 223
Q ss_pred HHHHHHHHHHHHHhCC---ChHHHHHHHHHHHHHHH
Q 004943 570 VSQYLTILGNLALALH---DTVQAREILRSSLTLAK 602 (722)
Q Consensus 570 ~a~~L~~LG~~~~a~g---~~~qA~~~l~~Al~lAk 602 (722)
-.....||++++-+| +.+-|++++.+|+.+.-
T Consensus 188 -~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 188 -PLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred -HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 234456677766666 66779999999998876
No 124
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.02 E-value=0.028 Score=58.59 Aligned_cols=153 Identities=14% Similarity=0.054 Sum_probs=107.1
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHh-hcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHH
Q 004943 454 MLRGQYAHSVGCYSEAAFHYVEAAKI-TESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASL 532 (722)
Q Consensus 454 ~llG~~~~alG~~~~Al~~f~~AL~l-~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~a 532 (722)
+...-.+...|+-+.++..-..++.- ..+.. . +.-.|...++.|++..+...+..+... . .. ...+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~---l-l~~~gk~~~~~g~~~~A~~~~rkA~~l--~---p~----d~~~ 136 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRE---L-LAAQGKNQIRNGNFGEAVSVLRKAARL--A---PT----DWEA 136 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHH---H-HHHHHHHHHHhcchHHHHHHHHHHhcc--C---CC----Chhh
Confidence 33444445666666666665543322 22221 1 122678888989988766666555443 1 11 3357
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHH
Q 004943 533 HFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIW 612 (722)
Q Consensus 533 l~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~ 612 (722)
+..+|.++.+.|+.++|+.-|.+|++++- - + ..+.++||..+.-.||.+.|+.++.++..... .-..
T Consensus 137 ~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~--~-~----p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~------ad~~ 203 (257)
T COG5010 137 WNLLGAALDQLGRFDEARRAYRQALELAP--N-E----PSIANNLGMSLLLRGDLEDAETLLLPAYLSPA------ADSR 203 (257)
T ss_pred hhHHHHHHHHccChhHHHHHHHHHHHhcc--C-C----chhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC------CchH
Confidence 88899999999999999999999999932 2 2 26889999999999999999999998876442 2245
Q ss_pred HHHHHHHHHHHcCCchhHhH
Q 004943 613 ALSVLTALYQQLGDRGNEME 632 (722)
Q Consensus 613 al~~L~~l~~~~Gd~~~A~e 632 (722)
+...|+.+-...||++.|.+
T Consensus 204 v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 204 VRQNLALVVGLQGDFREAED 223 (257)
T ss_pred HHHHHHHHHhhcCChHHHHh
Confidence 77888888899999988854
No 125
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.93 E-value=0.0039 Score=68.94 Aligned_cols=94 Identities=10% Similarity=0.091 Sum_probs=75.8
Q ss_pred HHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHHHH
Q 004943 351 VILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEA 430 (722)
Q Consensus 351 ~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~~ 430 (722)
+.-....|+|++|..++++|++. + +. ...++.++|.++...|++++|+..
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~---------~-P~--------------------~~~a~~~~a~~~~~~g~~~eAl~~ 58 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL---------D-PN--------------------NAELYADRAQANIKLGNFTEAVAD 58 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh---------C-CC--------------------CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 45566789999999999999987 2 22 122345789999999999999999
Q ss_pred HHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcc
Q 004943 431 LVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES 482 (722)
Q Consensus 431 l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~ 482 (722)
+.+++.+. |+. +.+++.+|.++..+|+|++|+..|+.++.+..+
T Consensus 59 ~~~Al~l~---P~~-----~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~ 102 (356)
T PLN03088 59 ANKAIELD---PSL-----AKAYLRKGTACMKLEEYQTAKAALEKGASLAPG 102 (356)
T ss_pred HHHHHHhC---cCC-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 99999973 332 456889999999999999999999999987644
No 126
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.93 E-value=0.022 Score=64.84 Aligned_cols=200 Identities=15% Similarity=0.047 Sum_probs=146.9
Q ss_pred hHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 004943 414 KVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYA 493 (722)
Q Consensus 414 Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnl 493 (722)
.|+.++.-|+..+|.=.|+.|+. +.|+- +-++..+|.+....++=..|..-+++|+++-.+- -.++..|
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVk---qdP~h-----aeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~N---leaLmaL 359 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVK---QDPQH-----AEAWQKLGITQAENENEQNAISALRRCLELDPTN---LEALMAL 359 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHh---hChHH-----HHHHHHhhhHhhhccchHHHHHHHHHHHhcCCcc---HHHHHHH
Confidence 58999999999999999998876 45553 4568889999888889899999998888763322 1233555
Q ss_pred HHHHHhcCChhHHHHHHH--------------------------------------HhcchhcccccccChHHHHHHHHH
Q 004943 494 AVSYFCIGDAESSSQAID--------------------------------------LIGPVYQMKDTINGVREEASLHFA 535 (722)
Q Consensus 494 a~v~l~~G~~e~a~~aL~--------------------------------------l~~~l~r~~~~~~~~~~~A~al~~ 535 (722)
|+.|+..|.-.++-..|+ ++....+..+... -.....+
T Consensus 360 AVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~----DpdvQ~~ 435 (579)
T KOG1125|consen 360 AVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKI----DPDVQSG 435 (579)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCC----ChhHHhh
Confidence 666666553322222222 1122212111111 2356778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHH
Q 004943 536 YGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALS 615 (722)
Q Consensus 536 lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~ 615 (722)
||.+|.-.|+|+.|.++|+.||.. + .--...-|-||-+.....+.++|...|++|+.+- |.-+++..
T Consensus 436 LGVLy~ls~efdraiDcf~~AL~v-~------Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq------P~yVR~Ry 502 (579)
T KOG1125|consen 436 LGVLYNLSGEFDRAVDCFEAALQV-K------PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ------PGYVRVRY 502 (579)
T ss_pred hHHHHhcchHHHHHHHHHHHHHhc-C------CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC------CCeeeeeh
Confidence 999999999999999999999988 3 2234578999999999999999999999999874 55678889
Q ss_pred HHHHHHHHcCCchhHhHHHHHHHHHH
Q 004943 616 VLTALYQQLGDRGNEMENDEYRRKKL 641 (722)
Q Consensus 616 ~L~~l~~~~Gd~~~A~e~~~~~~~~~ 641 (722)
.||--+...|.+.+|.++|=.+...-
T Consensus 503 NlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 503 NLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 99999999999999999887766543
No 127
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.90 E-value=0.0083 Score=66.33 Aligned_cols=95 Identities=17% Similarity=0.128 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHH
Q 004943 453 EMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASL 532 (722)
Q Consensus 453 ~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~a 532 (722)
+...|.-+...|+|++|+.+|.+|+....+. ..++.++|.+|...|+++.+...++.+..+.. . -+.+
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~---~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-----~----~~~a 72 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNN---AELYADRAQANIKLGNFTEAVADANKAIELDP-----S----LAKA 72 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-----C----CHHH
Confidence 4456788889999999999999999875543 45678899999999999886666665544411 1 2357
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 004943 533 HFAYGLLLMRQQDFQEARNRLAKGLQI 559 (722)
Q Consensus 533 l~~lG~~~~~~G~~~eAk~~L~qAL~l 559 (722)
++.+|.++...|++.+|...|++++++
T Consensus 73 ~~~lg~~~~~lg~~~eA~~~~~~al~l 99 (356)
T PLN03088 73 YLRKGTACMKLEEYQTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 889999999999999999999999998
No 128
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=96.90 E-value=0.048 Score=66.50 Aligned_cols=219 Identities=12% Similarity=0.008 Sum_probs=152.2
Q ss_pred HHHHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchh---
Q 004943 408 MQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS--- 484 (722)
Q Consensus 408 a~lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~--- 484 (722)
...+..|+..+...+++++|.+..+.+++. .|+. ...++..|.++...+.++.|... .++.......
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~---~P~~-----i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~ 100 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKE---HKKS-----ISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWA 100 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCcc-----eehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchh
Confidence 444567899999999999999999866664 4543 23478888899999999888777 5555443332
Q ss_pred -------------HHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHH
Q 004943 485 -------------MQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARN 551 (722)
Q Consensus 485 -------------~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~ 551 (722)
..-.++..+|.+|-..|+++.+..+.+.+...- . .-+.+++++|..+... +.++|+.
T Consensus 101 ~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-----~----~n~~aLNn~AY~~ae~-dL~KA~~ 170 (906)
T PRK14720 101 IVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-----R----DNPEIVKKLATSYEEE-DKEKAIT 170 (906)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----c----ccHHHHHHHHHHHHHh-hHHHHHH
Confidence 223688899999999999999888888877762 1 2457899999999888 9999999
Q ss_pred HHHHHHHHHHHhc-------------------CC--hHHHHHHHHHHH------------HHHHhCCChHHHHHHHHHHH
Q 004943 552 RLAKGLQIAHNHM-------------------GN--LQLVSQYLTILG------------NLALALHDTVQAREILRSSL 598 (722)
Q Consensus 552 ~L~qAL~la~~~~-------------------gd--~~l~a~~L~~LG------------~~~~a~g~~~qA~~~l~~Al 598 (722)
++.+|+..--+.- +| -+++-.++..+| .-|....++.++...++.++
T Consensus 171 m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL 250 (906)
T PRK14720 171 YLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKIL 250 (906)
T ss_pred HHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 9999988732110 01 012224445555 56666667777777777777
Q ss_pred HHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHHHHHHHhH--HHHHhhhch
Q 004943 599 TLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDELQK--RLADAYSSI 655 (722)
Q Consensus 599 ~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~l~~--~~~~a~~~~ 655 (722)
..-.+ --|+...|.+.|+ +.+.. ..+++.+.++++--.. +...|.+--
T Consensus 251 ~~~~~------n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s~l~~~~~~~~~~i~~f 300 (906)
T PRK14720 251 EHDNK------NNKAREELIRFYK--EKYKD-HSLLEDYLKMSDIGNNRKPVKDCIADF 300 (906)
T ss_pred hcCCc------chhhHHHHHHHHH--HHccC-cchHHHHHHHhccccCCccHHHHHHHH
Confidence 65433 3678888888888 45655 6777777777764332 334444433
No 129
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=96.88 E-value=0.11 Score=60.13 Aligned_cols=182 Identities=17% Similarity=0.096 Sum_probs=115.7
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 004943 415 VAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAA 494 (722)
Q Consensus 415 g~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla 494 (722)
+.+.+.+++.++|++.+++++..|..++- ++..+|++...+++.+.|...|.+.++.+.... ..++.++
T Consensus 658 ~~~er~ld~~eeA~rllEe~lk~fp~f~K--------l~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~i---pLWllLa 726 (913)
T KOG0495|consen 658 ANLERYLDNVEEALRLLEEALKSFPDFHK--------LWLMLGQIEEQMENIEMAREAYLQGTKKCPNSI---PLWLLLA 726 (913)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHhCCchHH--------HHHHHhHHHHHHHHHHHHHHHHHhccccCCCCc---hHHHHHH
Confidence 45678889999999999999987654444 478899999999999999999988776654321 1122223
Q ss_pred HHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHHHHHhcCChHHH--
Q 004943 495 VSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGL--LLMRQQDFQEARNRLAKGLQIAHNHMGNLQLV-- 570 (722)
Q Consensus 495 ~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~--~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~-- 570 (722)
-+--..|..-.++..|+..+- +.+++ +++.+.. .-.+.|..++|+....+||+-.- ..|-.+.+
T Consensus 727 kleEk~~~~~rAR~ildrarl--kNPk~---------~~lwle~Ir~ElR~gn~~~a~~lmakALQecp-~sg~LWaEaI 794 (913)
T KOG0495|consen 727 KLEEKDGQLVRARSILDRARL--KNPKN---------ALLWLESIRMELRAGNKEQAELLMAKALQECP-SSGLLWAEAI 794 (913)
T ss_pred HHHHHhcchhhHHHHHHHHHh--cCCCc---------chhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccchhHHHHH
Confidence 333333333335555554332 22211 1222222 23367777777777777766421 11111111
Q ss_pred ----------------------HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcC
Q 004943 571 ----------------------SQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLG 625 (722)
Q Consensus 571 ----------------------a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~G 625 (722)
..+|...|..++.....+.|++-+..|+..-...|| .|+... ..+...|
T Consensus 795 ~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD----~wa~fy--kfel~hG 865 (913)
T KOG0495|consen 795 WLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGD----AWAWFY--KFELRHG 865 (913)
T ss_pred HhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccch----HHHHHH--HHHHHhC
Confidence 246778899999999999999999999998888888 565433 3344444
No 130
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.83 E-value=0.0079 Score=51.78 Aligned_cols=83 Identities=18% Similarity=0.265 Sum_probs=61.6
Q ss_pred hCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHh
Q 004943 463 VGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMR 542 (722)
Q Consensus 463 lG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~ 542 (722)
.|+|+.|+.+|.+.+....... ....+.++|.+|.+.|+++.+...++. .+. .. . -....+.+|.++..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--~~---~----~~~~~~l~a~~~~~ 70 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--DP---S----NPDIHYLLARCLLK 70 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--HH---C----HHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--CC---C----CHHHHHHHHHHHHH
Confidence 5899999999999888776533 566778899999999999887777765 222 00 1 12344556999999
Q ss_pred cCCHHHHHHHHHHH
Q 004943 543 QQDFQEARNRLAKG 556 (722)
Q Consensus 543 ~G~~~eAk~~L~qA 556 (722)
.|++++|..+|.+|
T Consensus 71 l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 71 LGKYEEAIKALEKA 84 (84)
T ss_dssp TT-HHHHHHHHHHH
T ss_pred hCCHHHHHHHHhcC
Confidence 99999999999875
No 131
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.76 E-value=0.35 Score=51.37 Aligned_cols=68 Identities=10% Similarity=0.010 Sum_probs=47.7
Q ss_pred HhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchh
Q 004943 412 ENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS 484 (722)
Q Consensus 412 e~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~ 484 (722)
..+|.++...|+|++|+..|..+++.+-..|. .+.+++.+|.++..+|++++|...|+..++...+..
T Consensus 184 y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~-----~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 184 YWLGQLNYNKGKKDDAAYYFASVVKNYPKSPK-----AADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc-----hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 34788888888888888887777765443332 345577778888888888888888877776654443
No 132
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.76 E-value=0.027 Score=53.06 Aligned_cols=109 Identities=19% Similarity=0.114 Sum_probs=86.4
Q ss_pred HhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhH----HHHHHHHhc
Q 004943 439 IRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIG 514 (722)
Q Consensus 439 ~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~----a~~aL~l~~ 514 (722)
.+.|+....-.+.-+-+.|.....-|+++.|++.|.+|+.+... ++-+++|-|..+.-+|+.+. +.+++++.+
T Consensus 32 de~~~~~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~---raSayNNRAQa~RLq~~~e~ALdDLn~AleLag 108 (175)
T KOG4555|consen 32 DEEPDTQAIKASRELELKAIALAEAGDLDGALELFGQALCLAPE---RASAYNNRAQALRLQGDDEEALDDLNKALELAG 108 (175)
T ss_pred ccCCchHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhccc---chHhhccHHHHHHHcCChHHHHHHHHHHHHhcC
Confidence 34555444556777888999999999999999999999987654 36788999999999999875 677777766
Q ss_pred chhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 004943 515 PVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQI 559 (722)
Q Consensus 515 ~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~l 559 (722)
+-. +..+.++---|.+|..+|+-+.|+.-|..|-++
T Consensus 109 ~~t---------rtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 109 DQT---------RTACQAFVQRGLLYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred ccc---------hHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence 641 124567888899999999999999999988544
No 133
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.077 Score=58.51 Aligned_cols=188 Identities=15% Similarity=-0.010 Sum_probs=128.4
Q ss_pred hhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 004943 413 NKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAY 492 (722)
Q Consensus 413 ~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~alln 492 (722)
..|.+.+..+|..+|.=+|+.|..+. |-.+ .++..+=+.|.+.|++.+|...-..+.+..+.. |.++--
T Consensus 339 lKG~lL~~~~R~~~A~IaFR~Aq~La---p~rL-----~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~s---A~~LtL 407 (564)
T KOG1174|consen 339 LKGRLLIALERHTQAVIAFRTAQMLA---PYRL-----EIYRGLFHSYLAQKRFKEANALANWTIRLFQNS---ARSLTL 407 (564)
T ss_pred hccHHHHhccchHHHHHHHHHHHhcc---hhhH-----HHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcc---hhhhhh
Confidence 36888899999999999999888753 2222 334445566788999999999998887765443 333333
Q ss_pred HH-HHHHhcCC-hhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHH
Q 004943 493 AA-VSYFCIGD-AESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLV 570 (722)
Q Consensus 493 la-~v~l~~G~-~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~ 570 (722)
+| .|+.--.. .+.+...++....+ .+ .++ -+-+.++.++...|++..+...|+++|...- +
T Consensus 408 ~g~~V~~~dp~~rEKAKkf~ek~L~~---~P--~Y~----~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~--D------ 470 (564)
T KOG1174|consen 408 FGTLVLFPDPRMREKAKKFAEKSLKI---NP--IYT----PAVNLIAELCQVEGPTKDIIKLLEKHLIIFP--D------ 470 (564)
T ss_pred hcceeeccCchhHHHHHHHHHhhhcc---CC--ccH----HHHHHHHHHHHhhCccchHHHHHHHHHhhcc--c------
Confidence 33 34333111 12244444433222 11 111 3566788999999999999999999998832 2
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHH
Q 004943 571 SQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMEND 634 (722)
Q Consensus 571 a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~ 634 (722)
+...+.||.++.+...+.+|++++..|+.+ ||.. ..++.+|.++-....+++.-.|.-
T Consensus 471 ~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~-----dP~~-~~sl~Gl~~lEK~~~~~DATdE~D 528 (564)
T KOG1174|consen 471 VNLHNHLGDIMRAQNEPQKAMEYYYKALRQ-----DPKS-KRTLRGLRLLEKSDDESDATDESD 528 (564)
T ss_pred cHHHHHHHHHHHHhhhHHHHHHHHHHHHhc-----Cccc-hHHHHHHHHHHhccCCCCcccccc
Confidence 246678999999999999999999999875 3332 557888888887777776655543
No 134
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.70 E-value=0.057 Score=55.62 Aligned_cols=163 Identities=17% Similarity=0.136 Sum_probs=105.8
Q ss_pred HhCCHHHHHHHHHHHHHhhc---chhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHH
Q 004943 462 SVGCYSEAAFHYVEAAKITE---SKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGL 538 (722)
Q Consensus 462 alG~~~~Al~~f~~AL~l~~---~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~ 538 (722)
+-+.|++|.++|.+|-...+ +-..-..+..-+|..|+..|+ .+ .+...++-+.
T Consensus 26 g~~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~s--------------------kh----Daat~YveA~ 81 (288)
T KOG1586|consen 26 GSNKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGS--------------------KH----DAATTYVEAA 81 (288)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCC--------------------ch----hHHHHHHHHH
Confidence 34589999999987755433 211111222233344433221 12 3455556666
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 004943 539 LLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALAL-HDTVQAREILRSSLTLAKKLYDIPTQIWALSVL 617 (722)
Q Consensus 539 ~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~-g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L 617 (722)
-+++.+++++|.++|..|++|.. ..|.-..-|.....+|++|-.. .+.++|..+++.|-++.+.=... ++..
T Consensus 82 ~cykk~~~~eAv~cL~~aieIyt-~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~-----ssAN- 154 (288)
T KOG1586|consen 82 NCYKKVDPEEAVNCLEKAIEIYT-DMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESV-----SSAN- 154 (288)
T ss_pred HHhhccChHHHHHHHHHHHHHHH-hhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhh-----hhHH-
Confidence 66788999999999999999988 6999888899999999999887 89999999999999988654332 2221
Q ss_pred HHHHHHcCCchhHhHHHHHHHHHHHHHhHHHHHhhhchhhHHHHhh
Q 004943 618 TALYQQLGDRGNEMENDEYRRKKLDELQKRLADAYSSIHHIELISK 663 (722)
Q Consensus 618 ~~l~~~~Gd~~~A~e~~~~~~~~~~~l~~~~~~a~~~~~h~~l~~~ 663 (722)
.++...-++..-.+.|..+.++.+++. .+|..|. |+.|
T Consensus 155 -KC~lKvA~yaa~leqY~~Ai~iyeqva------~~s~~n~-LLKy 192 (288)
T KOG1586|consen 155 -KCLLKVAQYAAQLEQYSKAIDIYEQVA------RSSLDNN-LLKY 192 (288)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhccch-HHHh
Confidence 222333344455566666666666543 2344444 6666
No 135
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=96.69 E-value=0.025 Score=66.02 Aligned_cols=192 Identities=14% Similarity=0.090 Sum_probs=134.0
Q ss_pred HHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHH
Q 004943 410 FLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMC 489 (722)
Q Consensus 410 lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~a 489 (722)
+..+.+.||+..|.-+.|.....+-++ .-|| +..+..+|++.+.--+|+.|.+++.. +..+ |
T Consensus 426 mw~~vi~CY~~lg~~~kaeei~~q~le---k~~d------~~lyc~LGDv~~d~s~yEkawElsn~-------~sar--A 487 (777)
T KOG1128|consen 426 MWDPVILCYLLLGQHGKAEEINRQELE---KDPD------PRLYCLLGDVLHDPSLYEKAWELSNY-------ISAR--A 487 (777)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHhc---CCCc------chhHHHhhhhccChHHHHHHHHHhhh-------hhHH--H
Confidence 345667777777777777777555554 2233 46688899998888888888888842 2222 4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHH
Q 004943 490 HAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQL 569 (722)
Q Consensus 490 llnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l 569 (722)
...+|....+.++++++.+.++..-.+.. + .-..+|.+|.++...+++..|...|..++.+. ..
T Consensus 488 ~r~~~~~~~~~~~fs~~~~hle~sl~~np-------l--q~~~wf~~G~~ALqlek~q~av~aF~rcvtL~-------Pd 551 (777)
T KOG1128|consen 488 QRSLALLILSNKDFSEADKHLERSLEINP-------L--QLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE-------PD 551 (777)
T ss_pred HHhhccccccchhHHHHHHHHHHHhhcCc-------c--chhHHHhccHHHHHHhhhHHHHHHHHHHhhcC-------CC
Confidence 45556666677888887777776555411 1 44689999999999999999999999998882 33
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHHHH
Q 004943 570 VSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKL 641 (722)
Q Consensus 570 ~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~ 641 (722)
.+.+-|+|+..|...|+-.+|...+++|+. -.--++++|=...+ +--..|..+.|..+++.-....
T Consensus 552 ~~eaWnNls~ayi~~~~k~ra~~~l~EAlK----cn~~~w~iWENyml--vsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 552 NAEAWNNLSTAYIRLKKKKRAFRKLKEALK----CNYQHWQIWENYML--VSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred chhhhhhhhHHHHHHhhhHHHHHHHHHHhh----cCCCCCeeeechhh--hhhhcccHHHHHHHHHHHHHhh
Confidence 356899999999999999999988888775 22334456655443 3346666677766665554443
No 136
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=96.67 E-value=0.061 Score=64.71 Aligned_cols=173 Identities=10% Similarity=-0.033 Sum_probs=122.7
Q ss_pred hHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 004943 414 KVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYA 493 (722)
Q Consensus 414 Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnl 493 (722)
.+-.+....+|++|... .+...+..|-.. ...-...+|.|+..-+++..|..+|+.|++.... -..++..+
T Consensus 532 ~adtyae~~~we~a~~I---~l~~~qka~a~~---~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk---D~n~W~gL 602 (1238)
T KOG1127|consen 532 SADTYAEESTWEEAFEI---CLRAAQKAPAFA---CKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK---DYNLWLGL 602 (1238)
T ss_pred HHHHhhccccHHHHHHH---HHHHhhhchHHH---HHhhhhhccccccCccchhhHHHHHHHHhcCCch---hHHHHHHH
Confidence 46666777777777766 222222223221 1122223999999999999999999999976432 34677888
Q ss_pred HHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHH
Q 004943 494 AVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQY 573 (722)
Q Consensus 494 a~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~ 573 (722)
|..|.+.|++..+-.++..+..+ | +. -.++-|-.+....-.|+|.+|..-+..-+.....+..-.-+.+.+
T Consensus 603 GeAY~~sGry~~AlKvF~kAs~L-r-P~-------s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~ 673 (1238)
T KOG1127|consen 603 GEAYPESGRYSHALKVFTKASLL-R-PL-------SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAES 673 (1238)
T ss_pred HHHHHhcCceehHHHhhhhhHhc-C-cH-------hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 99999999999887777655444 1 11 123444455666688999999999999988865555555777788
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHc
Q 004943 574 LTILGNLALALHDTVQAREILRSSLTLAKKL 604 (722)
Q Consensus 574 L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki 604 (722)
+..++..+...|-...|.+.++.+.....-+
T Consensus 674 ~ir~akd~~~~gf~~kavd~~eksie~f~~~ 704 (1238)
T KOG1127|consen 674 VIRDAKDSAITGFQKKAVDFFEKSIESFIVS 704 (1238)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 8888888888898888889888888766543
No 137
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=96.66 E-value=0.019 Score=51.09 Aligned_cols=83 Identities=18% Similarity=0.169 Sum_probs=58.4
Q ss_pred HhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 004943 498 FCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTIL 577 (722)
Q Consensus 498 l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~L 577 (722)
++.||+..+.+.|...-..+....+......-..++..+|.++...|++++|...+++|+++++ +.+|+...+.++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar-e~~D~~~l~~al~~~ 87 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR-ENGDRRCLAYALSWL 87 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHH
Confidence 4557766544444333322222221111123467899999999999999999999999999998 699999999999888
Q ss_pred HHHH
Q 004943 578 GNLA 581 (722)
Q Consensus 578 G~~~ 581 (722)
..+.
T Consensus 88 ~~l~ 91 (94)
T PF12862_consen 88 ANLL 91 (94)
T ss_pred HHHh
Confidence 7654
No 138
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.66 E-value=0.0022 Score=52.28 Aligned_cols=61 Identities=21% Similarity=0.159 Sum_probs=52.0
Q ss_pred hhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhc
Q 004943 413 NKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITE 481 (722)
Q Consensus 413 ~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~ 481 (722)
.+|..+...|+|++|++.++++++.. |+ -+.+++.+|.++..+|++++|+..|+++++...
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~---P~-----~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQD---PD-----NPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCS---TT-----HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHC---CC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 46889999999999999999998854 54 357799999999999999999999999887654
No 139
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.63 E-value=0.022 Score=60.42 Aligned_cols=93 Identities=15% Similarity=0.089 Sum_probs=78.5
Q ss_pred HhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 004943 419 LTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYF 498 (722)
Q Consensus 419 l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l 498 (722)
...|+|++|+..|+..+.. +|+- ...+.+++.+|.++...|+|++|...|...++...+......++..+|.++.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~---yP~s--~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~ 228 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKK---YPDS--TYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQ 228 (263)
T ss_pred HhcCCHHHHHHHHHHHHHH---CcCC--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHH
Confidence 4469999999998877764 5654 3356789999999999999999999999999888888888888999999999
Q ss_pred hcCChhHHHHHHHHhcch
Q 004943 499 CIGDAESSSQAIDLIGPV 516 (722)
Q Consensus 499 ~~G~~e~a~~aL~l~~~l 516 (722)
..|+++.+...++.+...
T Consensus 229 ~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 229 DKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999888888766554
No 140
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.58 E-value=0.7 Score=48.15 Aligned_cols=180 Identities=13% Similarity=0.076 Sum_probs=118.0
Q ss_pred HhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHH
Q 004943 412 ENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHA 491 (722)
Q Consensus 412 e~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~all 491 (722)
+.-+.++...-.|++|-.++..|.+-++....+ .+.+-.+-..|.....+..+.++..+|+.|.
T Consensus 35 ekAAvafRnAk~feKakdcLlkA~~~yEnnrsl--fhAAKayEqaamLake~~klsEvvdl~eKAs-------------- 98 (308)
T KOG1585|consen 35 EKAAVAFRNAKKFEKAKDCLLKASKGYENNRSL--FHAAKAYEQAAMLAKELSKLSEVVDLYEKAS-------------- 98 (308)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHhcccH--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--------------
Confidence 455777888889999999988888877776666 3456677778888888888888888886554
Q ss_pred HHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHH
Q 004943 492 YAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVS 571 (722)
Q Consensus 492 nla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a 571 (722)
..|...|.++.+.-+|+..... ...-+|++|.+.|++++.+.. +.+..+...
T Consensus 99 ---~lY~E~GspdtAAmaleKAak~------------------------lenv~Pd~AlqlYqralavve-~~dr~~ma~ 150 (308)
T KOG1585|consen 99 ---ELYVECGSPDTAAMALEKAAKA------------------------LENVKPDDALQLYQRALAVVE-EDDRDQMAF 150 (308)
T ss_pred ---HHHHHhCCcchHHHHHHHHHHH------------------------hhcCCHHHHHHHHHHHHHHHh-ccchHHHHH
Confidence 3466667777777776654332 234567888888888888864 333345555
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHH
Q 004943 572 QYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDE 635 (722)
Q Consensus 572 ~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~ 635 (722)
.-+--.|.++-+...+.+|-..+..=-.++.++..-..+....+.+=-+|.-..|+..|...+.
T Consensus 151 el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r 214 (308)
T KOG1585|consen 151 ELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYR 214 (308)
T ss_pred HHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 6666666777776677776666666666666665554444444433333443446665555443
No 141
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.56 E-value=0.006 Score=49.65 Aligned_cols=59 Identities=20% Similarity=0.202 Sum_probs=50.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q 004943 535 AYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTL 600 (722)
Q Consensus 535 ~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~l 600 (722)
.+|..+..+|++++|...|+++++.. .....++..+|.++..+|++++|...++.++..
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~-------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQD-------PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCS-------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46888899999999999999998772 335678999999999999999999999998864
No 142
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.55 E-value=0.93 Score=52.32 Aligned_cols=227 Identities=13% Similarity=0.028 Sum_probs=139.8
Q ss_pred HHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhC---Cch----hhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-hc
Q 004943 410 FLENKVAVELTRSGFVEAQEALVQMKNWFIRF---PTI----LQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKI-TE 481 (722)
Q Consensus 410 lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~---~d~----~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l-~~ 481 (722)
+++|.++++...|+|++|++.++.|+.+|++. +|. ...-...+..-+.-+.+-+|+.++|...|...++. ..
T Consensus 177 l~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~ 256 (652)
T KOG2376|consen 177 LLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPA 256 (652)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC
Confidence 44799999999999999999999999999882 332 12235667777888899999999999999776543 23
Q ss_pred chhHHHHHHHHHH---------------------------------------------HHHHhcCChhHHHHHHHHh---
Q 004943 482 SKSMQAMCHAYAA---------------------------------------------VSYFCIGDAESSSQAIDLI--- 513 (722)
Q Consensus 482 ~~~~~A~allnla---------------------------------------------~v~l~~G~~e~a~~aL~l~--- 513 (722)
|.+..|++.+|+- .+-+..+..+++++.....
T Consensus 257 D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~ 336 (652)
T KOG2376|consen 257 DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGM 336 (652)
T ss_pred CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcc
Confidence 3334444444442 1111111111100000000
Q ss_pred ----------------cch--------hcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH---hcCC
Q 004943 514 ----------------GPV--------YQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHN---HMGN 566 (722)
Q Consensus 514 ----------------~~l--------~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~---~~gd 566 (722)
+.. .....+..+. ....+.+..+.++..+|++..|...|+.-+..... ..++
T Consensus 337 ~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~-~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~ 415 (652)
T KOG2376|consen 337 SPESLFPILLQEATKVREKKHKKAIELLLQFADGHPE-KSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKH 415 (652)
T ss_pred CchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCc-hhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhcc
Confidence 000 0000000111 12346777888888999999999999844432221 3444
Q ss_pred hHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHH-HHHHHHHHHcCCchhHhHHHHHHHHH
Q 004943 567 LQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWAL-SVLTALYQQLGDRGNEMENDEYRRKK 640 (722)
Q Consensus 567 ~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al-~~L~~l~~~~Gd~~~A~e~~~~~~~~ 640 (722)
.+++..+...| +...++..-|-..+.+|+.++++...-.....+. ..++......|.-.+|...++.-.++
T Consensus 416 ~P~~V~aiv~l---~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~ 487 (652)
T KOG2376|consen 416 LPGTVGAIVAL---YYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF 487 (652)
T ss_pred ChhHHHHHHHH---HHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh
Confidence 55555555554 7788888889999999999999875443333332 34444455558778887777776663
No 143
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.48 E-value=0.018 Score=49.50 Aligned_cols=83 Identities=22% Similarity=0.174 Sum_probs=64.2
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Q 004943 543 QQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQ 622 (722)
Q Consensus 543 ~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~ 622 (722)
+|++++|..++.+.++... .+. ...++..||.+++..|++++|.+.++. .. .++ ....+...+|+++-
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~---~~~--~~~~~~~la~~~~~~~~y~~A~~~~~~-~~----~~~--~~~~~~~l~a~~~~ 69 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDP---TNP--NSAYLYNLAQCYFQQGKYEEAIELLQK-LK----LDP--SNPDIHYLLARCLL 69 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHC---GTH--HHHHHHHHHHHHHHTTHHHHHHHHHHC-HT----HHH--CHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCC---CCh--hHHHHHHHHHHHHHCCCHHHHHHHHHH-hC----CCC--CCHHHHHHHHHHHH
Confidence 6899999999999999843 232 556777799999999999999999888 21 111 12567778899999
Q ss_pred HcCCchhHhHHHHHH
Q 004943 623 QLGDRGNEMENDEYR 637 (722)
Q Consensus 623 ~~Gd~~~A~e~~~~~ 637 (722)
..|++++|.++++.+
T Consensus 70 ~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 70 KLGKYEEAIKALEKA 84 (84)
T ss_dssp HTT-HHHHHHHHHHH
T ss_pred HhCCHHHHHHHHhcC
Confidence 999999999988753
No 144
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.46 E-value=1.1 Score=46.56 Aligned_cols=190 Identities=15% Similarity=0.119 Sum_probs=125.7
Q ss_pred HhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhhcchhHHH---HHHHHHH
Q 004943 419 LTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSV-GCYSEAAFHYVEAAKITESKSMQA---MCHAYAA 494 (722)
Q Consensus 419 l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~al-G~~~~Al~~f~~AL~l~~~~~~~A---~allnla 494 (722)
...+++.+|..+++.++++|..-|.. ...+.-+.-+|.++..- .+++.|..+|++|-.-.......+ -|++-.|
T Consensus 84 ykk~~~~eAv~cL~~aieIyt~~Grf--~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA 161 (288)
T KOG1586|consen 84 YKKVDPEEAVNCLEKAIEIYTDMGRF--TMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVA 161 (288)
T ss_pred hhccChHHHHHHHHHHHHHHHhhhHH--HHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHH
Confidence 34569999999999999999999986 44567788888888776 899999999988887665444333 3444434
Q ss_pred HHHHhcCChhHHHHHHHHhcchhccc-ccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHH
Q 004943 495 VSYFCIGDAESSSQAIDLIGPVYQMK-DTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQY 573 (722)
Q Consensus 495 ~v~l~~G~~e~a~~aL~l~~~l~r~~-~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~ 573 (722)
..--..| +..++.++...+.++. +++.--+..=..++.-|..|+..++...|.+.|++-.++.= ...+ .-+|.-
T Consensus 162 ~yaa~le---qY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP-~F~d-sREckf 236 (288)
T KOG1586|consen 162 QYAAQLE---QYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDP-AFTD-SRECKF 236 (288)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCC-cccc-cHHHHH
Confidence 3322223 3555555555544433 22211111224677888999898999999988888877743 3444 556776
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Q 004943 574 LTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQ 622 (722)
Q Consensus 574 L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~ 622 (722)
+-.|-...-... .+.+...+.-...+.-. ..|....|-++-.
T Consensus 237 lk~L~~aieE~d-----~e~fte~vkefDsisrL--D~W~ttiLlkiK~ 278 (288)
T KOG1586|consen 237 LKDLLDAIEEQD-----IEKFTEVVKEFDSISRL--DQWKTTILLKIKK 278 (288)
T ss_pred HHHHHHHHhhhh-----HHHHHHHHHhhhccchH--HHHHHHHHHHHHH
Confidence 666655554432 66777777777776654 4677777766544
No 145
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.041 Score=60.64 Aligned_cols=175 Identities=15% Similarity=0.081 Sum_probs=122.1
Q ss_pred HHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHH
Q 004943 348 LMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEA 427 (722)
Q Consensus 348 lls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA 427 (722)
++-+.|++..|.+++|.+ ++..+ ++ +.. .. + .++. --|.|....++.+.|
T Consensus 173 ~lka~cl~~~~~~~~a~~---ea~~i----lk-ld~-~n---------------~----~al~--vrg~~~yy~~~~~ka 222 (486)
T KOG0550|consen 173 LLKAECLAFLGDYDEAQS---EAIDI----LK-LDA-TN---------------A----EALY--VRGLCLYYNDNADKA 222 (486)
T ss_pred HhhhhhhhhcccchhHHH---HHHHH----Hh-ccc-ch---------------h----HHHH--hcccccccccchHHH
Confidence 455677777888888874 44444 11 111 11 1 1222 237888899999999
Q ss_pred HHHHHHHHHHHHhCCc----hhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcch-hHHHHHHHHHHHHHHhcCC
Q 004943 428 QEALVQMKNWFIRFPT----ILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK-SMQAMCHAYAAVSYFCIGD 502 (722)
Q Consensus 428 ~~~l~~Al~l~~~~~d----~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~-~~~A~allnla~v~l~~G~ 502 (722)
+.++.+++.+-...-+ -...-..-.....|--....|.|..|.+.|.+|+.+..+. ..-+.++.|.|.+.++.|+
T Consensus 223 ~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgr 302 (486)
T KOG0550|consen 223 INHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGR 302 (486)
T ss_pred HHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCC
Confidence 9999999997544322 1111233556778999999999999999999999886554 4788999999999999999
Q ss_pred hhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 004943 503 AESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAH 561 (722)
Q Consensus 503 ~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~ 561 (722)
.+++..-.+.+..+ + .. -.-++.+-|..|...+++++|.+.+.+|++...
T Consensus 303 l~eaisdc~~Al~i----D-~s----yikall~ra~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 303 LREAISDCNEALKI----D-SS----YIKALLRRANCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred chhhhhhhhhhhhc----C-HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 76532222222222 0 11 124678888999999999999999999999943
No 146
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.086 Score=58.16 Aligned_cols=137 Identities=16% Similarity=0.230 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcch------------hHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchh
Q 004943 450 SMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK------------SMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVY 517 (722)
Q Consensus 450 a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~------------~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~ 517 (722)
+......|-++...|+|..|...|..|++..... .....|++|+|.+|+-++++..+.+..+.+...
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~- 286 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL- 286 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc-
Confidence 3445567778888999999999998888765421 155688999999999999998766666666554
Q ss_pred cccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 004943 518 QMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSS 597 (722)
Q Consensus 518 r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~A 597 (722)
.+ .+. -++|.-|.++...|+|+.|+..|++|+++ +=.| .-...-+.-|-..+.+. .+...++|...
T Consensus 287 -~~---~N~----KALyRrG~A~l~~~e~~~A~~df~ka~k~---~P~N-ka~~~el~~l~~k~~~~--~~kekk~y~~m 352 (397)
T KOG0543|consen 287 -DP---NNV----KALYRRGQALLALGEYDLARDDFQKALKL---EPSN-KAARAELIKLKQKIREY--EEKEKKMYANM 352 (397)
T ss_pred -CC---Cch----hHHHHHHHHHHhhccHHHHHHHHHHHHHh---CCCc-HHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 11 112 37999999999999999999999999999 3556 33333344444444331 12234566555
Q ss_pred HHHH
Q 004943 598 LTLA 601 (722)
Q Consensus 598 l~lA 601 (722)
+.-.
T Consensus 353 F~k~ 356 (397)
T KOG0543|consen 353 FAKL 356 (397)
T ss_pred hhcc
Confidence 5433
No 147
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.39 E-value=2.7 Score=48.35 Aligned_cols=125 Identities=18% Similarity=0.164 Sum_probs=91.5
Q ss_pred hCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHh
Q 004943 421 RSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES-KSMQAMCHAYAAVSYFC 499 (722)
Q Consensus 421 ~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~-~~~~A~allnla~v~l~ 499 (722)
..+...|.+.+...+. ++|+- +.-+...|.+....|+.++|...|+.++....+ +....+|.--+|++|..
T Consensus 246 ~~~~~~a~~lL~~~~~---~yP~s-----~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~ 317 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLK---RYPNS-----ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMF 317 (468)
T ss_pred CCCHHHHHHHHHHHHH---hCCCc-----HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHH
Confidence 4455566666555544 46763 466888999999999999999999988843222 24778999999999999
Q ss_pred cCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCH-------HHHHHHHHHHHHHHH
Q 004943 500 IGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDF-------QEARNRLAKGLQIAH 561 (722)
Q Consensus 500 ~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~-------~eAk~~L~qAL~la~ 561 (722)
+++++++...+..+.... .+-+|.+.+..|..+...|+. .+|...+.++=.+..
T Consensus 318 ~~~w~~A~~~f~~L~~~s--------~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 318 QHDWEEAAEYFLRLLKES--------KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HchHHHHHHHHHHHHhcc--------ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 999988766666554431 123788888889999999999 666666666666644
No 148
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.39 E-value=0.078 Score=61.59 Aligned_cols=140 Identities=14% Similarity=0.018 Sum_probs=90.3
Q ss_pred chhHHHHHHHHHHhhccCCC---hHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHH
Q 004943 340 SAVYALVDLMVVILGRPKGL---FKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVA 416 (722)
Q Consensus 340 ~~l~aLvylls~~~~~~kg~---~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~ 416 (722)
..+-++-+++.+.....++. +.+|..++++|++. |+.. +..+-.++.
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---------dP~~---------------------a~a~A~la~ 384 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---------EPDF---------------------TYAQAEKAL 384 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---------CCCc---------------------HHHHHHHHH
Confidence 55678888888888876655 56888888888888 3221 111122344
Q ss_pred HHHhhCCHH----HHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 004943 417 VELTRSGFV----EAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAY 492 (722)
Q Consensus 417 ~~l~~g~~~----eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~alln 492 (722)
++..+..|. .......++.+.....|.. ...+.++...|..+...|++++|..+|++|+.+-.+ +.++..
T Consensus 385 ~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~--~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps----~~a~~~ 458 (517)
T PRK10153 385 ADIVRHSQQPLDEKQLAALSTELDNIVALPEL--NVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS----WLNYVL 458 (517)
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHhhhcccC--cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----HHHHHH
Confidence 444433332 1122222222221122211 223577888999999999999999999999988742 568888
Q ss_pred HHHHHHhcCChhHHHHHHHHhcc
Q 004943 493 AAVSYFCIGDAESSSQAIDLIGP 515 (722)
Q Consensus 493 la~v~l~~G~~e~a~~aL~l~~~ 515 (722)
+|.++...|+++++.+.++.+..
T Consensus 459 lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 459 LGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 89999999999887666665543
No 149
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=96.36 E-value=0.024 Score=60.96 Aligned_cols=157 Identities=15% Similarity=0.158 Sum_probs=101.5
Q ss_pred HHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCC
Q 004943 344 ALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSG 423 (722)
Q Consensus 344 aLvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~ 423 (722)
.++.++.++.+...|.+++|.+.+.++ + . + .+ .++ .+.+++..+|
T Consensus 102 ~~~~~~~A~i~~~~~~~~~AL~~l~~~-----------~---~-----l--------E~----~al----~Vqi~L~~~R 146 (290)
T PF04733_consen 102 EIVQLLAATILFHEGDYEEALKLLHKG-----------G---S-----L--------EL----LAL----AVQILLKMNR 146 (290)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHCCCTTT-----------T---C-----H--------HH----HHH----HHHHHHHTT-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcc-----------C---c-----c--------cH----HHH----HHHHHHHcCC
Confidence 356788888888899988776544332 1 1 0 00 122 4788999999
Q ss_pred HHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcC
Q 004943 424 FVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVG--CYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIG 501 (722)
Q Consensus 424 ~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG--~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G 501 (722)
++.|.+.++.+.++ ..|- ..+....+++....| .+.+|...|++-. ...+.....++.+|.+++.+|
T Consensus 147 ~dlA~k~l~~~~~~---~eD~-----~l~qLa~awv~l~~g~e~~~~A~y~f~El~---~~~~~t~~~lng~A~~~l~~~ 215 (290)
T PF04733_consen 147 PDLAEKELKNMQQI---DEDS-----ILTQLAEAWVNLATGGEKYQDAFYIFEELS---DKFGSTPKLLNGLAVCHLQLG 215 (290)
T ss_dssp HHHHHHHHHHHHCC---SCCH-----HHHHHHHHHHHHHHTTTCCCHHHHHHHHHH---CCS--SHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhc---CCcH-----HHHHHHHHHHHHHhCchhHHHHHHHHHHHH---hccCCCHHHHHHHHHHHHHhC
Confidence 99999988776543 2332 233444556666666 6999999997633 222333455677899999999
Q ss_pred ChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCH-HHHHHHHHH
Q 004943 502 DAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDF-QEARNRLAK 555 (722)
Q Consensus 502 ~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~-~eAk~~L~q 555 (722)
+++++...|..+... .. . ...++.+++.+....|+. +.+.+++.+
T Consensus 216 ~~~eAe~~L~~al~~--~~---~----~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 216 HYEEAEELLEEALEK--DP---N----DPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp -HHHHHHHHHHHCCC---C---C----HHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh--cc---C----CHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 999988888765432 11 1 345777888888999998 455556655
No 150
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=96.32 E-value=0.21 Score=54.02 Aligned_cols=161 Identities=15% Similarity=0.139 Sum_probs=94.1
Q ss_pred HhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchh--HHH--
Q 004943 412 ENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS--MQA-- 487 (722)
Q Consensus 412 e~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~--~~A-- 487 (722)
..-+.+|+..|+-.-|+.-+.+.+++ -||... +...+|.+...+|.+++|.+-|...|....+.+ .++
T Consensus 76 frRaT~yLAmGksk~al~Dl~rVlel---KpDF~~-----ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqs 147 (504)
T KOG0624|consen 76 FRRATVYLAMGKSKAALQDLSRVLEL---KPDFMA-----ARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQS 147 (504)
T ss_pred HHHHHHHhhhcCCccchhhHHHHHhc---CccHHH-----HHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHH
Confidence 34588888899999999998888875 467422 245679999999999999999998887544332 222
Q ss_pred --------HHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 004943 488 --------MCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQI 559 (722)
Q Consensus 488 --------~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~l 559 (722)
..++.....+..-||...+..-+.-+.++ ... -|..+..-+..+...|++-.|..-++.+-++
T Consensus 148 kl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-------~~W--da~l~~~Rakc~i~~~e~k~AI~Dlk~askL 218 (504)
T KOG0624|consen 148 KLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-------QPW--DASLRQARAKCYIAEGEPKKAIHDLKQASKL 218 (504)
T ss_pred HHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-------Ccc--hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 22333344455556644333333322222 001 2233333455666777777777777777776
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHH
Q 004943 560 AHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRS 596 (722)
Q Consensus 560 a~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~ 596 (722)
+.. . - ..+.-++.+++..|+.+.+++..|+
T Consensus 219 s~D-n-T-----e~~ykis~L~Y~vgd~~~sL~~iRE 248 (504)
T KOG0624|consen 219 SQD-N-T-----EGHYKISQLLYTVGDAENSLKEIRE 248 (504)
T ss_pred ccc-c-h-----HHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 432 1 1 2333444444444444444444333
No 151
>PLN02789 farnesyltranstransferase
Probab=96.27 E-value=1.1 Score=49.08 Aligned_cols=217 Identities=11% Similarity=-0.010 Sum_probs=130.5
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhC
Q 004943 343 YALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRS 422 (722)
Q Consensus 343 ~aLvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g 422 (722)
-+.-||..++ ...+++++|...+.+++++ .+.. -..|.- .+.+....|
T Consensus 38 ~a~~~~ra~l--~~~e~serAL~lt~~aI~l---------nP~~--------ytaW~~-------------R~~iL~~L~ 85 (320)
T PLN02789 38 EAMDYFRAVY--ASDERSPRALDLTADVIRL---------NPGN--------YTVWHF-------------RRLCLEALD 85 (320)
T ss_pred HHHHHHHHHH--HcCCCCHHHHHHHHHHHHH---------Cchh--------HHHHHH-------------HHHHHHHcc
Confidence 5666776664 3455677888888888777 1111 345522 222333335
Q ss_pred -CHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHh
Q 004943 423 -GFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCY--SEAAFHYVEAAKITESKSMQAMCHAYAAVSYFC 499 (722)
Q Consensus 423 -~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~--~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~ 499 (722)
++.+|+..+.+++.. .|.- ..+.+.+|.+...+|.. ++++..+..++..-. .-..++.+.+.++..
T Consensus 86 ~~l~eeL~~~~~~i~~---npkn-----yqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dp---kNy~AW~~R~w~l~~ 154 (320)
T PLN02789 86 ADLEEELDFAEDVAED---NPKN-----YQIWHHRRWLAEKLGPDAANKELEFTRKILSLDA---KNYHAWSHRQWVLRT 154 (320)
T ss_pred hhHHHHHHHHHHHHHH---CCcc-----hHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCc---ccHHHHHHHHHHHHH
Confidence 578898888888864 3443 34588889888888874 778888877775432 224566777788877
Q ss_pred cCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhc---CCH----HHHHHHHHHHHHHHHHhcCChHHHHH
Q 004943 500 IGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQ---QDF----QEARNRLAKGLQIAHNHMGNLQLVSQ 572 (722)
Q Consensus 500 ~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~---G~~----~eAk~~L~qAL~la~~~~gd~~l~a~ 572 (722)
.|++++..+..+.+-.. ...+ ..+++..|.+..+. |++ +++..+..+++.+.- .| ..
T Consensus 155 l~~~~eeL~~~~~~I~~--d~~N-------~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P---~N----~S 218 (320)
T PLN02789 155 LGGWEDELEYCHQLLEE--DVRN-------NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANP---RN----ES 218 (320)
T ss_pred hhhHHHHHHHHHHHHHH--CCCc-------hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCC---CC----cC
Confidence 78776533333322221 1111 24566666665544 333 467777778877732 22 23
Q ss_pred HHHHHHHHHHh----CCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHc
Q 004943 573 YLTILGNLALA----LHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQL 624 (722)
Q Consensus 573 ~L~~LG~~~~a----~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~ 624 (722)
+.+.++.++.. .++..+|.+.+..+... ... -..++..|+++|...
T Consensus 219 aW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~--~~~----s~~al~~l~d~~~~~ 268 (320)
T PLN02789 219 PWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK--DSN----HVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHHHHHHhcCCcccccchhHHHHHHHhhcc--cCC----cHHHHHHHHHHHHhh
Confidence 66777777777 34556677777665541 222 245788888988763
No 152
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=96.19 E-value=0.92 Score=52.83 Aligned_cols=219 Identities=16% Similarity=0.099 Sum_probs=145.7
Q ss_pred ChHHHHHHH-----HHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHHHHHHH
Q 004943 359 LFKECMQRI-----QSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQ 433 (722)
Q Consensus 359 ~~~kA~k~~-----~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~~l~~ 433 (722)
.|+++.+++ .+||+.++.++.+.+.-.. .|-..|......|+-++|....+.
T Consensus 10 lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHge-----------------------slAmkGL~L~~lg~~~ea~~~vr~ 66 (700)
T KOG1156|consen 10 LFRRALKCYETKQYKKGLKLIKQILKKFPEHGE-----------------------SLAMKGLTLNCLGKKEEAYELVRL 66 (700)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhCCccch-----------------------hHHhccchhhcccchHHHHHHHHH
Confidence 456666554 4789999998886654322 122368889999999999999887
Q ss_pred HHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchh--HHHHHHHHHHHHHHhcCChhH---HHH
Q 004943 434 MKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS--MQAMCHAYAAVSYFCIGDAES---SSQ 508 (722)
Q Consensus 434 Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~--~~A~allnla~v~l~~G~~e~---a~~ 508 (722)
++. .|. ....++...|.+..+..+|++|...|+.|+++-.+.. .++.+++ -+.+|+++. .+.
T Consensus 67 glr-----~d~---~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslL-----Q~QmRd~~~~~~tr~ 133 (700)
T KOG1156|consen 67 GLR-----NDL---KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLL-----QIQMRDYEGYLETRN 133 (700)
T ss_pred Hhc-----cCc---ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHH-----HHHHHhhhhHHHHHH
Confidence 776 343 3457899999999999999999999999999876653 4444433 344556554 333
Q ss_pred HHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHhCCC
Q 004943 509 AIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGN--LQLVSQYLTILGNLALALHD 586 (722)
Q Consensus 509 aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd--~~l~a~~L~~LG~~~~a~g~ 586 (722)
.+-..+|- +=+.++..+..++-.|++..|...+.+--+... ..-+ ..-....+.-.-.+....|.
T Consensus 134 ~LLql~~~------------~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~-~~~s~~~~e~se~~Ly~n~i~~E~g~ 200 (700)
T KOG1156|consen 134 QLLQLRPS------------QRASWIGFAVAQHLLGEYKMALEILEEFEKTQN-TSPSKEDYEHSELLLYQNQILIEAGS 200 (700)
T ss_pred HHHHhhhh------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHHccc
Confidence 33222332 224677888888899999999998888777643 2223 33444555566677888888
Q ss_pred hHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhH
Q 004943 587 TVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEME 632 (722)
Q Consensus 587 ~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e 632 (722)
.++|.+.+.. .-++.....-....-++++...|+.++|..
T Consensus 201 ~q~ale~L~~------~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~ 240 (700)
T KOG1156|consen 201 LQKALEHLLD------NEKQIVDKLAFEETKADLLMKLGQLEEAVK 240 (700)
T ss_pred HHHHHHHHHh------hhhHHHHHHHHhhhHHHHHHHHhhHHhHHH
Confidence 7777766432 222222233344455667777777777743
No 153
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=96.12 E-value=1.6 Score=51.10 Aligned_cols=268 Identities=15% Similarity=0.068 Sum_probs=167.6
Q ss_pred ccccCcchhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHH----------HHhcCCCCCcccc-------hhhhhH
Q 004943 334 GEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDA----------LLKLGITDGVREV-------DLQHSA 396 (722)
Q Consensus 334 ~~WLpk~~l~aLvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~----------~~~lg~~~g~~e~-------~l~~~~ 396 (722)
+.|.|.... +++=-+++-...|..+.-..++++|+..+-+. .-..||.++.+.. +-+..-
T Consensus 543 lqvfp~k~s---lWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnsee 619 (913)
T KOG0495|consen 543 LQVFPCKKS---LWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEE 619 (913)
T ss_pred HhhccchhH---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHH
Confidence 467776543 23444556666778888888888888764321 1122443321100 001134
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004943 397 IWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEA 476 (722)
Q Consensus 397 ~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~A 476 (722)
||-+ . +-+.....+++.|...+.++... .+...+++--..+-..+|..++|+.+++++
T Consensus 620 iwla--------a-----vKle~en~e~eraR~llakar~~---------sgTeRv~mKs~~~er~ld~~eeA~rllEe~ 677 (913)
T KOG0495|consen 620 IWLA--------A-----VKLEFENDELERARDLLAKARSI---------SGTERVWMKSANLERYLDNVEEALRLLEEA 677 (913)
T ss_pred HHHH--------H-----HHHhhccccHHHHHHHHHHHhcc---------CCcchhhHHHhHHHHHhhhHHHHHHHHHHH
Confidence 5511 1 33445567778888877777662 233456666677778899999999999999
Q ss_pred HHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004943 477 AKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKG 556 (722)
Q Consensus 477 L~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qA 556 (722)
++.+.+-.- .++.+|.++...++.+.++.++..-...|-. ..+ -+..++.+-...|.+..|+..|.++
T Consensus 678 lk~fp~f~K---l~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~---~ip------LWllLakleEk~~~~~rAR~ildra 745 (913)
T KOG0495|consen 678 LKSFPDFHK---LWLMLGQIEEQMENIEMAREAYLQGTKKCPN---SIP------LWLLLAKLEEKDGQLVRARSILDRA 745 (913)
T ss_pred HHhCCchHH---HHHHHhHHHHHHHHHHHHHHHHHhccccCCC---Cch------HHHHHHHHHHHhcchhhHHHHHHHH
Confidence 988776542 2345688888888777788887655444332 232 3666778888999999999999988
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHH------------------------HH
Q 004943 557 LQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQ------------------------IW 612 (722)
Q Consensus 557 L~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q------------------------~~ 612 (722)
.-- |+-..-.-|-.+ .+.++.|+.++|+.+...||+-.-..|-.+.+ -.
T Consensus 746 rlk------NPk~~~lwle~I-r~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dph 818 (913)
T KOG0495|consen 746 RLK------NPKNALLWLESI-RMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPH 818 (913)
T ss_pred Hhc------CCCcchhHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCch
Confidence 433 322222222222 56788899999999998888754443322111 12
Q ss_pred HHHHHHHHHHHcCCchhHhHHHHHHHHHHHHHh
Q 004943 613 ALSVLTALYQQLGDRGNEMENDEYRRKKLDELQ 645 (722)
Q Consensus 613 al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~l~ 645 (722)
++...+.++-.....++|+++|+.+.++=.+++
T Consensus 819 Vllaia~lfw~e~k~~kar~Wf~Ravk~d~d~G 851 (913)
T KOG0495|consen 819 VLLAIAKLFWSEKKIEKAREWFERAVKKDPDNG 851 (913)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHccCCccc
Confidence 334455566666678888888888877654443
No 154
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=96.09 E-value=0.024 Score=60.99 Aligned_cols=151 Identities=16% Similarity=0.128 Sum_probs=97.7
Q ss_pred hHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 004943 414 KVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYA 493 (722)
Q Consensus 414 Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnl 493 (722)
.|.++...|++++|++.+.+. +.+ ++. .+.=.++..+|+++.|...|...-+..+| ..+..+..
T Consensus 108 ~A~i~~~~~~~~~AL~~l~~~-------~~l----E~~--al~Vqi~L~~~R~dlA~k~l~~~~~~~eD---~~l~qLa~ 171 (290)
T PF04733_consen 108 AATILFHEGDYEEALKLLHKG-------GSL----ELL--ALAVQILLKMNRPDLAEKELKNMQQIDED---SILTQLAE 171 (290)
T ss_dssp HHHHHCCCCHHHHHHCCCTTT-------TCH----HHH--HHHHHHHHHTT-HHHHHHHHHHHHCCSCC---HHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcc-------Ccc----cHH--HHHHHHHHHcCCHHHHHHHHHHHHhcCCc---HHHHHHHH
Confidence 377788899999999886543 222 222 33446778999999999999655444333 23444445
Q ss_pred HHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHH
Q 004943 494 AVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQY 573 (722)
Q Consensus 494 a~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~ 573 (722)
|++.+..|. +....|+-.+.++....+.. ...++.++.++..+|++++|...+.+||.. . -. ...+
T Consensus 172 awv~l~~g~-e~~~~A~y~f~El~~~~~~t------~~~lng~A~~~l~~~~~~eAe~~L~~al~~-~--~~----~~d~ 237 (290)
T PF04733_consen 172 AWVNLATGG-EKYQDAFYIFEELSDKFGST------PKLLNGLAVCHLQLGHYEEAEELLEEALEK-D--PN----DPDT 237 (290)
T ss_dssp HHHHHHHTT-TCCCHHHHHHHHHHCCS--S------HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC----CC----HHHH
T ss_pred HHHHHHhCc-hhHHHHHHHHHHHHhccCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-c--cC----CHHH
Confidence 666677776 43444444445543333221 246889999999999999999999999864 1 22 2458
Q ss_pred HHHHHHHHHhCCChHH-HHHHH
Q 004943 574 LTILGNLALALHDTVQ-AREIL 594 (722)
Q Consensus 574 L~~LG~~~~a~g~~~q-A~~~l 594 (722)
+.++..+....|+..+ +....
T Consensus 238 LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 238 LANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHH
Confidence 8899999999998844 44343
No 155
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.08 E-value=0.062 Score=50.75 Aligned_cols=100 Identities=15% Similarity=0.056 Sum_probs=78.4
Q ss_pred HHHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHH-
Q 004943 409 QFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQA- 487 (722)
Q Consensus 409 ~lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A- 487 (722)
.-|+-.|......|+.++|++.|.+++.++-+ .+.++++..+.+.-.|+.++|+.-..+|+.++++.+..+
T Consensus 44 ~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~--------raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtac 115 (175)
T KOG4555|consen 44 RELELKAIALAEAGDLDGALELFGQALCLAPE--------RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTAC 115 (175)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhccc--------chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHH
Confidence 34455688888999999999999999998743 356689999999999999999999999999999885222
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhcch
Q 004943 488 MCHAYAAVSYFCIGDAESSSQAIDLIGPV 516 (722)
Q Consensus 488 ~allnla~v~l~~G~~e~a~~aL~l~~~l 516 (722)
.+.+.-|.+|..+|+-+.++.-++....+
T Consensus 116 qa~vQRg~lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 116 QAFVQRGLLYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred HHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence 34445588998889877766666555444
No 156
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.08 E-value=0.97 Score=47.44 Aligned_cols=177 Identities=17% Similarity=0.110 Sum_probs=132.3
Q ss_pred HHHHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHH
Q 004943 408 MQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQA 487 (722)
Q Consensus 408 a~lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A 487 (722)
+-.|.+-|...+..|+|.+|.+.|+... .++|-. .....+...++-.+...++|++|+.....=+++.....-.+
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~---~~~p~s--~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d 108 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALD---SRHPFS--PYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD 108 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH---HcCCCC--cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh
Confidence 3345678999999999999999998876 566653 22357777888888999999999999998888888877778
Q ss_pred HHHHHHHHHHHhcCC---hh--HHHHHHHHhcchhcccccccCh-H----------HHHHHHHHHHHHHHhcCCHHHHHH
Q 004943 488 MCHAYAAVSYFCIGD---AE--SSSQAIDLIGPVYQMKDTINGV-R----------EEASLHFAYGLLLMRQQDFQEARN 551 (722)
Q Consensus 488 ~allnla~v~l~~G~---~e--~a~~aL~l~~~l~r~~~~~~~~-~----------~~A~al~~lG~~~~~~G~~~eAk~ 551 (722)
.+..-.|+++...=+ .| .+.+++..+..+...=+++... . ..|.-=...|..|.+.|.+..|..
T Consensus 109 Y~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~n 188 (254)
T COG4105 109 YAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAIN 188 (254)
T ss_pred HHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence 887777887654322 22 3777777777664433222111 0 113444566888999999999999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHH
Q 004943 552 RLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREI 593 (722)
Q Consensus 552 ~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~ 593 (722)
.+++.++- .-+..-+-.+|-.|.+.|...|..++|.+.
T Consensus 189 R~~~v~e~----y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~ 226 (254)
T COG4105 189 RFEEVLEN----YPDTSAVREALARLEEAYYALGLTDEAKKT 226 (254)
T ss_pred HHHHHHhc----cccccchHHHHHHHHHHHHHhCChHHHHHH
Confidence 99999887 335566678999999999999999998864
No 157
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.03 E-value=0.35 Score=45.01 Aligned_cols=115 Identities=12% Similarity=0.165 Sum_probs=86.7
Q ss_pred HHHHHHHHH--HHHHHhcCCHHHHHHHHHHHHHHHHHhcC-----C-hHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 004943 528 EEASLHFAY--GLLLMRQQDFQEARNRLAKGLQIAHNHMG-----N-LQLVSQYLTILGNLALALHDTVQAREILRSSLT 599 (722)
Q Consensus 528 ~~A~al~~l--G~~~~~~G~~~eAk~~L~qAL~la~~~~g-----d-~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~ 599 (722)
+.+.+|..+ |.-....|.|.+|...+++|+++++. +- | ....|.+...|+..+..+|++++++.....||.
T Consensus 5 eVa~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srt-iP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~ 83 (144)
T PF12968_consen 5 EVAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRT-IPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALR 83 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTT-S-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc-CChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 345555554 56666889999999999999999863 32 2 244677888999999999999999999999999
Q ss_pred HHHHcCCh---hHHHHHHHHHHH--HHHHcCCchhHhHHHHHHHHHHHH
Q 004943 600 LAKKLYDI---PTQIWALSVLTA--LYQQLGDRGNEMENDEYRRKKLDE 643 (722)
Q Consensus 600 lAkki~D~---~~q~~al~~L~~--l~~~~Gd~~~A~e~~~~~~~~~~~ 643 (722)
-+.+-|+. ...+|+.....+ ....+|++++|...|++......+
T Consensus 84 YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaE 132 (144)
T PF12968_consen 84 YFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAE 132 (144)
T ss_dssp HHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence 99988654 467898877665 567889999999999887766543
No 158
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.01 E-value=0.2 Score=53.29 Aligned_cols=157 Identities=15% Similarity=0.148 Sum_probs=105.0
Q ss_pred HhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcc-hhHHHHH-
Q 004943 412 ENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES-KSMQAMC- 489 (722)
Q Consensus 412 e~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~-~~~~A~a- 489 (722)
.-+|.||....+|.+|..+|++...++-+... .+...+..+| ..+.+..|++.. ....| ......|
T Consensus 48 SlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~q-YrlY~AQSLY-------~A~i~ADALrV~----~~~~D~~~L~~~~l 115 (459)
T KOG4340|consen 48 SLLGYCYYRLQEFALAAECYEQLGQLHPELEQ-YRLYQAQSLY-------KACIYADALRVA----FLLLDNPALHSRVL 115 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhChHHHH-HHHHHHHHHH-------HhcccHHHHHHH----HHhcCCHHHHHHHH
Confidence 44799999999999999999997665433222 1112233333 345566677665 55555 3333333
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHH
Q 004943 490 HAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQL 569 (722)
Q Consensus 490 llnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l 569 (722)
.+..|+.|.. ||...++..++..-.. +.|....+.|++.+..|.+++|.+.++.|++. -|-..+
T Consensus 116 qLqaAIkYse-~Dl~g~rsLveQlp~e-----------n~Ad~~in~gCllykegqyEaAvqkFqaAlqv----sGyqpl 179 (459)
T KOG4340|consen 116 QLQAAIKYSE-GDLPGSRSLVEQLPSE-----------NEADGQINLGCLLYKEGQYEAAVQKFQAALQV----SGYQPL 179 (459)
T ss_pred HHHHHHhccc-ccCcchHHHHHhccCC-----------CccchhccchheeeccccHHHHHHHHHHHHhh----cCCCch
Confidence 3444555544 6655566555542211 26778899999999999999999999999988 344466
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 004943 570 VSQYLTILGNLALALHDTVQAREILRSSLT 599 (722)
Q Consensus 570 ~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~ 599 (722)
.|. +++-.+++.|++.+|.++-.+-..
T Consensus 180 lAY---niALaHy~~~qyasALk~iSEIie 206 (459)
T KOG4340|consen 180 LAY---NLALAHYSSRQYASALKHISEIIE 206 (459)
T ss_pred hHH---HHHHHHHhhhhHHHHHHHHHHHHH
Confidence 554 677789999999999988665543
No 159
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.98 E-value=0.031 Score=62.78 Aligned_cols=67 Identities=16% Similarity=0.120 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHH-HHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q 004943 529 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVS-QYLTILGNLALALHDTVQAREILRSSLTL 600 (722)
Q Consensus 529 ~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a-~~L~~LG~~~~a~g~~~qA~~~l~~Al~l 600 (722)
-+.+++++|.+++..|+|++|...|++||++.- | ..++ .+++++|.+|..+|+.++|.+.++.|+.+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~P----d-~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNP----N-PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC----C-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 367899999999999999999999999999921 2 3333 67999999999999999999999999996
No 160
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=95.93 E-value=0.51 Score=53.26 Aligned_cols=148 Identities=11% Similarity=-0.066 Sum_probs=103.5
Q ss_pred HHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHH
Q 004943 410 FLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMC 489 (722)
Q Consensus 410 lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~a 489 (722)
.....+..+...|.+++|++.+.. +....|+. +...-..|.++...|+.++|.+.|+.++.+..+. ...
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~---L~~~~P~N-----~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~---~~l 376 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQP---LIAAQPDN-----PYYLELAGDILLEANKAKEAIERLKKALALDPNS---PLL 376 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHH---HHHhCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc---cHH
Confidence 345678888999999999999888 66778874 3557789999999999999999999998776554 455
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHH
Q 004943 490 HAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQL 569 (722)
Q Consensus 490 llnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l 569 (722)
..|+|.+++..|++.++.+.|..... +.++ + ...+.-+|.+|-.+|+..+|.
T Consensus 377 ~~~~a~all~~g~~~eai~~L~~~~~--~~p~-d------p~~w~~LAqay~~~g~~~~a~------------------- 428 (484)
T COG4783 377 QLNLAQALLKGGKPQEAIRILNRYLF--NDPE-D------PNGWDLLAQAYAELGNRAEAL------------------- 428 (484)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHhh--cCCC-C------chHHHHHHHHHHHhCchHHHH-------------------
Confidence 67889999999999865555543211 1111 1 235666666665555444433
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Q 004943 570 VSQYLTILGNLALALHDTVQAREILRSSLTLA 601 (722)
Q Consensus 570 ~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lA 601 (722)
...++.++-.|++++|...+..|....
T Consensus 429 -----~A~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 429 -----LARAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred -----HHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 334455666677777777766665544
No 161
>PRK11906 transcriptional regulator; Provisional
Probab=95.79 E-value=0.12 Score=58.18 Aligned_cols=137 Identities=13% Similarity=0.122 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHhC---CHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhc-----CChh-HHHHHHHHhcchhccccc
Q 004943 452 IEMLRGQYAHSVG---CYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCI-----GDAE-SSSQAIDLIGPVYQMKDT 522 (722)
Q Consensus 452 i~~llG~~~~alG---~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~-----G~~e-~a~~aL~l~~~l~r~~~~ 522 (722)
-+|+.|.-....+ ..++|+.+|.+|+....-.+.-+.++..+|.+|... .+.+ ....+++.++.......
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~- 335 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITT- 335 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCC-
Confidence 4578887776655 566899999998854443333344444445554332 2322 24455554433211111
Q ss_pred ccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Q 004943 523 INGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLA 601 (722)
Q Consensus 523 ~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lA 601 (722)
. -+.+++.+|.+....|++..|...|.+|+.+. .-.|.+....|++.+-.|+.++|.++++.|+.+.
T Consensus 336 -~----Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-------Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs 402 (458)
T PRK11906 336 -V----DGKILAIMGLITGLSGQAKVSHILFEQAKIHS-------TDIASLYYYRALVHFHNEKIEEARICIDKSLQLE 402 (458)
T ss_pred -C----CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 1 34689999999999999999999999998882 4567889999999999999999999999998875
No 162
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.78 E-value=0.051 Score=45.00 Aligned_cols=62 Identities=19% Similarity=0.256 Sum_probs=52.4
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchh
Q 004943 415 VAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS 484 (722)
Q Consensus 415 g~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~ 484 (722)
..++..+++|++|++.+++++.+. |+ .+..+...|.++..+|++++|...|+.++....+..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~---p~-----~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~ 63 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELD---PD-----DPELWLQRARCLFQLGRYEEALEDLERALELSPDDP 63 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC---cc-----cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence 567899999999999999999984 33 235588899999999999999999999998766543
No 163
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=95.70 E-value=0.96 Score=52.62 Aligned_cols=189 Identities=16% Similarity=0.087 Sum_probs=120.3
Q ss_pred HhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHH-HHH
Q 004943 412 ENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQA-MCH 490 (722)
Q Consensus 412 e~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A-~al 490 (722)
..++..+-..|++++|++.+.+|++. .|.. .-.++..|.++...|++.+|......|- ...... +.+
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~-----~ely~~KarilKh~G~~~~Aa~~~~~Ar----~LD~~DRyiN 265 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEH---TPTL-----VELYMTKARILKHAGDLKEAAEAMDEAR----ELDLADRYIN 265 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhc---CCCc-----HHHHHHHHHHHHHCCCHHHHHHHHHHHH----hCChhhHHHH
Confidence 34788899999999999999999985 3443 3458999999999999999999995554 333333 222
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHH-HHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChH
Q 004943 491 AYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVRE-EAS-LHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQ 568 (722)
Q Consensus 491 lnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~-~A~-al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~ 568 (722)
...+-..++.|+.+.+...+.++...-. +...++++ ++. .....|..|.++|++..|...+...++... +.-+.|
T Consensus 266 sK~aKy~LRa~~~e~A~~~~~~Ftr~~~--~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~-~~~~DQ 342 (517)
T PF12569_consen 266 SKCAKYLLRAGRIEEAEKTASLFTREDV--DPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFD-DFEEDQ 342 (517)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhhcCCCC--CcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-HHhccc
Confidence 3335566788888877777776643321 11233332 333 455679999999999999999999999965 455544
Q ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcC
Q 004943 569 LVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLG 625 (722)
Q Consensus 569 l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~G 625 (722)
.-=.+.. ... | ....+..=+.+-.++.+.+.=..+....-++|...-
T Consensus 343 fDFH~Yc-----~RK-~----t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~ 389 (517)
T PF12569_consen 343 FDFHSYC-----LRK-M----TLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELH 389 (517)
T ss_pred ccHHHHH-----Hhh-c----cHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh
Confidence 4322211 111 1 022333344455555555555555555555554433
No 164
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.69 E-value=0.072 Score=56.68 Aligned_cols=99 Identities=18% Similarity=0.179 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHH
Q 004943 449 ESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVRE 528 (722)
Q Consensus 449 ~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~ 528 (722)
.+--+-.-|-=.+.-++|++|+..|.+|+.+.... ++-+-|-|.+|..+|.++.+-+.++....+ . .+
T Consensus 80 ~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~n---AVyycNRAAAy~~Lg~~~~AVkDce~Al~i-D----p~---- 147 (304)
T KOG0553|consen 80 LAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTN---AVYYCNRAAAYSKLGEYEDAVKDCESALSI-D----PH---- 147 (304)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc---chHHHHHHHHHHHhcchHHHHHHHHHHHhc-C----hH----
Confidence 34445667888899999999999999999876322 334445578899999988755555544333 1 11
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 004943 529 EASLHFAYGLLLMRQQDFQEARNRLAKGLQI 559 (722)
Q Consensus 529 ~A~al~~lG~~~~~~G~~~eAk~~L~qAL~l 559 (722)
=.-+|-.+|.++..+|++.+|.+.|.+||.+
T Consensus 148 yskay~RLG~A~~~~gk~~~A~~aykKaLel 178 (304)
T KOG0553|consen 148 YSKAYGRLGLAYLALGKYEEAIEAYKKALEL 178 (304)
T ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHhhhcc
Confidence 1247889999999999999999999999998
No 165
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.68 E-value=3.7 Score=43.78 Aligned_cols=136 Identities=15% Similarity=0.092 Sum_probs=98.4
Q ss_pred HHhhCCHHHHHHHHHHHHHHH-HhCCchhhhhHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhhcc-h----------h
Q 004943 418 ELTRSGFVEAQEALVQMKNWF-IRFPTILQACESMIEMLRGQYAHSVG-CYSEAAFHYVEAAKITES-K----------S 484 (722)
Q Consensus 418 ~l~~g~~~eA~~~l~~Al~l~-~~~~d~~~~~~a~i~~llG~~~~alG-~~~~Al~~f~~AL~l~~~-~----------~ 484 (722)
.+.+||++.|...+.++-.+. ...|+.. ...+.+.|+.|.-....+ +++.|..++++|..+... . .
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~-~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e 81 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMA-EELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE 81 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHH-HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence 578999999999999999988 4456543 357899999999999999 999999999999887422 1 2
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 004943 485 MQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 560 (722)
Q Consensus 485 ~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la 560 (722)
.+.-++..++.+|+..++++...++...++.+-...++...+ .+..+ .+....++.+++.+.+.+.+.-.
T Consensus 82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~-----~~L~l-~il~~~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 82 LRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEV-----FLLKL-EILLKSFDEEEYEEILMRMIRSV 151 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHH-----HHHHH-HHHhccCChhHHHHHHHHHHHhc
Confidence 677888889999999888887555555554443333322211 11222 11223688888888888887763
No 166
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=95.58 E-value=0.78 Score=54.59 Aligned_cols=197 Identities=15% Similarity=0.064 Sum_probs=104.1
Q ss_pred HHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 004943 417 VELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVS 496 (722)
Q Consensus 417 ~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v 496 (722)
.|-.+|.|++|.+. .+ ..|. .+.-..+|+-+.+..+.|+.+.|+++|+++=...-+. .-+..-+.+.+
T Consensus 835 lyQs~g~w~eA~ei-------AE-~~DR--iHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev--~rmL~e~p~~~ 902 (1416)
T KOG3617|consen 835 LYQSQGMWSEAFEI-------AE-TKDR--IHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEV--FRMLKEYPKQI 902 (1416)
T ss_pred HHHhcccHHHHHHH-------Hh-hccc--eehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHH--HHHHHhChHHH
Confidence 44455555555543 22 2333 3556788999999999999999999997642110000 00011111111
Q ss_pred --HHhcCChhHHHHHHHHhcchhcccccc---cChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHH
Q 004943 497 --YFCIGDAESSSQAIDLIGPVYQMKDTI---NGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVS 571 (722)
Q Consensus 497 --~l~~G~~e~a~~aL~l~~~l~r~~~~~---~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a 571 (722)
|.+.-+-+. .+...+....+.|+. ......|.=+|.+-.++..+|+.++|. ++|+ +.|| ..
T Consensus 903 e~Yv~~~~d~~---L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa-------~iA~-esgd-~A-- 968 (1416)
T KOG3617|consen 903 EQYVRRKRDES---LYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAA-------RIAE-ESGD-KA-- 968 (1416)
T ss_pred HHHHHhccchH---HHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHH-------HHHH-hccc-HH--
Confidence 222111111 011111111111110 000012222333333334467666554 5666 6888 33
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHc-----CChhHHHHHHHHH---------HHHHHHcC-CchhHhHHHHH
Q 004943 572 QYLTILGNLALALHDTVQAREILRSSLTLAKKL-----YDIPTQIWALSVL---------TALYQQLG-DRGNEMENDEY 636 (722)
Q Consensus 572 ~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki-----~D~~~q~~al~~L---------~~l~~~~G-d~~~A~e~~~~ 636 (722)
+-+.||..|-..|+..+|...+..|-+....| +|...++|.+..+ ++-|...| ...+|...|..
T Consensus 969 -AcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHk 1047 (1416)
T KOG3617|consen 969 -ACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHK 1047 (1416)
T ss_pred -HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHh
Confidence 33478999999999999999999988877766 7777788887654 34455555 44555555554
Q ss_pred HHHH
Q 004943 637 RRKK 640 (722)
Q Consensus 637 ~~~~ 640 (722)
+.-+
T Consensus 1048 AGm~ 1051 (1416)
T KOG3617|consen 1048 AGMI 1051 (1416)
T ss_pred hcch
Confidence 4333
No 167
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.52 E-value=0.033 Score=40.32 Aligned_cols=35 Identities=29% Similarity=0.231 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCh
Q 004943 573 YLTILGNLALALHDTVQAREILRSSLTLAKKLYDI 607 (722)
Q Consensus 573 ~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~ 607 (722)
++..||.+|...|++++|++++++++.+.+...|+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~~~~ 35 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDPEDR 35 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHCT-H
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCC
Confidence 57899999999999999999999999999887764
No 168
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.43 E-value=0.065 Score=60.26 Aligned_cols=67 Identities=9% Similarity=-0.152 Sum_probs=57.0
Q ss_pred HHHHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 004943 408 MQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKI 479 (722)
Q Consensus 408 a~lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l 479 (722)
...+.|+|.++...|+|++|+..|++++++ .|+. .....++|++|-++..+|++++|++.|+.|+.+
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~--aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNP--DEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCc--hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445578999999999999999999999998 3553 111267999999999999999999999999886
No 169
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=95.41 E-value=0.21 Score=56.35 Aligned_cols=146 Identities=16% Similarity=0.147 Sum_probs=105.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHH
Q 004943 490 HAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQL 569 (722)
Q Consensus 490 llnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l 569 (722)
..-.|+.++..|.++++...|. ++.....++. +++-..|.++...|+..+|.+.+++++.+.- +.
T Consensus 309 ~YG~A~~~~~~~~~d~A~~~l~---~L~~~~P~N~------~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P----~~-- 373 (484)
T COG4783 309 QYGRALQTYLAGQYDEALKLLQ---PLIAAQPDNP------YYLELAGDILLEANKAKEAIERLKKALALDP----NS-- 373 (484)
T ss_pred HHHHHHHHHHhcccchHHHHHH---HHHHhCCCCH------HHHHHHHHHHHHcCChHHHHHHHHHHHhcCC----Cc--
Confidence 3444666667777777666664 3545444332 4556678999999999999999999998821 22
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHHHHHHHhHHHH
Q 004943 570 VSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDELQKRLA 649 (722)
Q Consensus 570 ~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~l~~~~~ 649 (722)
.-.-.++|.+++..|++.+|...+...+. ..++ ..-....|++.|..+|+..+|.+++.........+...+.
T Consensus 374 -~~l~~~~a~all~~g~~~eai~~L~~~~~---~~p~---dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~ 446 (484)
T COG4783 374 -PLLQLNLAQALLKGGKPQEAIRILNRYLF---NDPE---DPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAII 446 (484)
T ss_pred -cHHHHHHHHHHHhcCChHHHHHHHHHHhh---cCCC---CchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHH
Confidence 23556899999999999999988877653 2222 2335678899999999999999999888888887777766
Q ss_pred Hhhhchhh
Q 004943 650 DAYSSIHH 657 (722)
Q Consensus 650 ~a~~~~~h 657 (722)
.+...-.-
T Consensus 447 ~l~~A~~~ 454 (484)
T COG4783 447 FLMRASQQ 454 (484)
T ss_pred HHHHHHHh
Confidence 65544433
No 170
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.39 E-value=0.79 Score=51.78 Aligned_cols=272 Identities=15% Similarity=0.110 Sum_probs=150.7
Q ss_pred hhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHHHHHH
Q 004943 353 LGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALV 432 (722)
Q Consensus 353 ~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~~l~ 432 (722)
....-|.|.-+..|+.+||+-+...++. |..+...-.-.. .+ .+.+++|.|..++..|++-+|.++|.
T Consensus 292 Ih~~~~~y~~~~~~F~kAL~N~c~qL~~-g~~~~~~~tls~------nk-----s~eilYNcG~~~Lh~grPl~AfqCf~ 359 (696)
T KOG2471|consen 292 IHYQLGCYQASSVLFLKALRNSCSQLRN-GLKPAKTFTLSQ------NK-----SMEILYNCGLLYLHSGRPLLAFQCFQ 359 (696)
T ss_pred EeeehhhHHHHHHHHHHHHHHHHHHHhc-cCCCCcceehhc------cc-----chhhHHhhhHHHHhcCCcHHHHHHHH
Confidence 3445567788889999999743333443 322210000111 11 45677899999999999999999999
Q ss_pred HHHHHHHhCCc-hhhhhHHHHHHHHHHHHH-HhCCHHHHHHHH-------HHHH--------Hhhcch-------hHHHH
Q 004943 433 QMKNWFIRFPT-ILQACESMIEMLRGQYAH-SVGCYSEAAFHY-------VEAA--------KITESK-------SMQAM 488 (722)
Q Consensus 433 ~Al~l~~~~~d-~~~~~~a~i~~llG~~~~-alG~~~~Al~~f-------~~AL--------~l~~~~-------~~~A~ 488 (722)
.+...|++.|. .++..++.+--+-|-... ..+-.++..--- +.-+ ...++. +--++
T Consensus 360 ~av~vfh~nPrlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~v 439 (696)
T KOG2471|consen 360 KAVHVFHRNPRLWLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARV 439 (696)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHH
Confidence 99999999998 333455555444433322 222222210000 0000 000000 12235
Q ss_pred HHHHHHHHHHhc--CChhHHHHHHHHhc-----------chhccc---ccc------------cC-hHHHHHHHHHHHHH
Q 004943 489 CHAYAAVSYFCI--GDAESSSQAIDLIG-----------PVYQMK---DTI------------NG-VREEASLHFAYGLL 539 (722)
Q Consensus 489 allnla~v~l~~--G~~e~a~~aL~l~~-----------~l~r~~---~~~------------~~-~~~~A~al~~lG~~ 539 (722)
|+.| |+..+.. .++....-+...-. +.+.+. ++. .+ .+.+++.+-.++.+
T Consensus 440 CLrn-al~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV 518 (696)
T KOG2471|consen 440 CLRN-ALYLLNEKQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYV 518 (696)
T ss_pred HHHh-hhhcCchhhcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 5554 4333311 11111222211110 111100 110 00 12357778888999
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHh-----CCChHHHHHHHHH------HHHHHHHcCC--
Q 004943 540 LMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALA-----LHDTVQAREILRS------SLTLAKKLYD-- 606 (722)
Q Consensus 540 ~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a-----~g~~~qA~~~l~~------Al~lAkki~D-- 606 (722)
....|++..|..+-.+-|+.++ +.+ ++.+||++|.+ ..++.+|..++.+ .+.+--.-.|
T Consensus 519 ~L~Lgd~i~AL~~a~kLLq~~~--lS~------~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~ 590 (696)
T KOG2471|consen 519 ELELGDPIKALSAATKLLQLAD--LSK------IYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFD 590 (696)
T ss_pred HHHhcChhhHHHHHHHHHhhhh--hhh------HHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhh
Confidence 9999999999999888888853 444 78889988865 4688888888877 2221111111
Q ss_pred --------------h----------hHHHHHHHHHHHHHHHcCCchhHhHHHHHHHHHHHHHh
Q 004943 607 --------------I----------PTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDELQ 645 (722)
Q Consensus 607 --------------~----------~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~l~ 645 (722)
+ ..+--....|+.++.-+|++++|.....-+....-++-
T Consensus 591 ~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v 653 (696)
T KOG2471|consen 591 QWWKHTETLDPSTGRTRQSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLHSLV 653 (696)
T ss_pred hhhccccccCCcCCCCcccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccc
Confidence 1 12233456888889999999998887765555444333
No 171
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=95.38 E-value=0.8 Score=53.96 Aligned_cols=141 Identities=11% Similarity=0.027 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh
Q 004943 401 GVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKIT 480 (722)
Q Consensus 401 ~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~ 480 (722)
.++.+.-+.+-.++|.....+++|.++.++++.++++.- .....++..|-++...+++..|...|..++.+-
T Consensus 478 Elsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~np--------lq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~ 549 (777)
T KOG1128|consen 478 ELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINP--------LQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE 549 (777)
T ss_pred HHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCc--------cchhHHHhccHHHHHHhhhHHHHHHHHHHhhcC
Confidence 445555556667778888889999999999999998742 233458999999999999999999998777553
Q ss_pred cchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 004943 481 ESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 560 (722)
Q Consensus 481 ~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la 560 (722)
. +.+-+++|++-.|++.|+-..+...+..+..-...+ . ..+-+.-.+...-|..++|+..+++-+.+-
T Consensus 550 P---d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~-----w----~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 550 P---DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQH-----W----QIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred C---CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC-----C----eeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 3 446788999999999988666666666554432211 1 123334455578899999999999999995
Q ss_pred H
Q 004943 561 H 561 (722)
Q Consensus 561 ~ 561 (722)
+
T Consensus 618 ~ 618 (777)
T KOG1128|consen 618 K 618 (777)
T ss_pred h
Confidence 4
No 172
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.30 E-value=0.04 Score=39.91 Aligned_cols=34 Identities=18% Similarity=0.247 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 004943 532 LHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGN 566 (722)
Q Consensus 532 al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd 566 (722)
++..+|.+|..+|++++|..+|+++|.+.. +.++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~-~~~~ 34 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR-DPED 34 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH-HCT-
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc-cccC
Confidence 578899999999999999999999999965 4555
No 173
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.29 E-value=0.067 Score=59.02 Aligned_cols=126 Identities=17% Similarity=0.101 Sum_probs=91.3
Q ss_pred cccCcch-hHHHHHH--HHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHH
Q 004943 335 EWLPKSA-VYALVDL--MVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFL 411 (722)
Q Consensus 335 ~WLpk~~-l~aLvyl--ls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lL 411 (722)
+|..-.. .+..... ..+-.+.-.|.|..|...|++|+..+.- ..+.++. .+ ....-+...++
T Consensus 196 s~~~~~~e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~---~~~~~~e-------e~-----~~~~~~k~~~~ 260 (397)
T KOG0543|consen 196 SWKMFAEERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEY---RRSFDEE-------EQ-----KKAEALKLACH 260 (397)
T ss_pred ccccchHHHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhc---cccCCHH-------HH-----HHHHHHHHHHh
Confidence 5765444 3333322 3477888999999999999999999431 1111111 01 11222367788
Q ss_pred HhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcch
Q 004943 412 ENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK 483 (722)
Q Consensus 412 e~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~ 483 (722)
.|+++|++...+|.+|++.-.++|++-.. -.-.+|..|..+..+|.|+.|...|+.++++-.+.
T Consensus 261 lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~--------N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N 324 (397)
T KOG0543|consen 261 LNLAACYLKLKEYKEAIESCNKVLELDPN--------NVKALYRRGQALLALGEYDLARDDFQKALKLEPSN 324 (397)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHhcCCC--------chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999885321 23558999999999999999999999999876544
No 174
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.18 E-value=1.8 Score=43.82 Aligned_cols=116 Identities=17% Similarity=0.141 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHH
Q 004943 451 MIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEA 530 (722)
Q Consensus 451 ~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A 530 (722)
+...-+......-|++++|+.+.+.++..+.|....+++..++|.+.+.+|.+|.+...|+.+..- +. .+
T Consensus 90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~--------~w--~~ 159 (207)
T COG2976 90 LAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE--------SW--AA 159 (207)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc--------cH--HH
Confidence 444455666678899999999999999999999999999999999999999888877777654331 11 33
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 004943 531 SLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTIL 577 (722)
Q Consensus 531 ~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~L 577 (722)
..-..-|.++...|+-.+|+..|.+||+.- ..-.-+++.-+=|+.|
T Consensus 160 ~~~elrGDill~kg~k~~Ar~ay~kAl~~~-~s~~~~~~lqmKLn~L 205 (207)
T COG2976 160 IVAELRGDILLAKGDKQEARAAYEKALESD-ASPAAREILQMKLNNL 205 (207)
T ss_pred HHHHHhhhHHHHcCchHHHHHHHHHHHHcc-CChHHHHHHHhHHHhc
Confidence 455567999999999999999999999983 2222234444444444
No 175
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.08 E-value=4.4 Score=41.04 Aligned_cols=180 Identities=16% Similarity=0.150 Sum_probs=114.5
Q ss_pred CHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHH---HHHHH---hCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 004943 423 GFVEAQEALVQMKNWFIRFPTILQACESMIEMLRG---QYAHS---VGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVS 496 (722)
Q Consensus 423 ~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG---~~~~a---lG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v 496 (722)
.+.+=.+.+++...++++.|-.+ ....++-..| +-+.. .+...+|-..|+.+++...
T Consensus 3 ~~~~E~qql~~ik~wwkeNGk~l--i~gviLg~~~lfGW~ywq~~q~~q~~~AS~~Y~~~i~~~~--------------- 65 (207)
T COG2976 3 YYLEEQQQLEAIKDWWKENGKAL--IVGVILGLGGLFGWRYWQSHQVEQAQEASAQYQNAIKAVQ--------------- 65 (207)
T ss_pred chhhHHHHHHHHHHHHHHCCchh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------
Confidence 34455678889999999998742 2334444433 33333 3344467777765554322
Q ss_pred HHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 004943 497 YFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTI 576 (722)
Q Consensus 497 ~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~ 576 (722)
.+.++....+-..+.. .+ .... -+.+...++......|++++|...|+++|.... |..+.+.+-..
T Consensus 66 ---ak~~~~~~~~ekf~~~----n~--~t~Y-a~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~----De~lk~l~~lR 131 (207)
T COG2976 66 ---AKKPKSIAAAEKFVQA----NG--KTIY-AVLAALELAKAEVEANNLDKAEAQLKQALAQTK----DENLKALAALR 131 (207)
T ss_pred ---cCCchhHHHHHHHHhh----cc--ccHH-HHHHHHHHHHHHHhhccHHHHHHHHHHHHccch----hHHHHHHHHHH
Confidence 1333222222111111 11 1111 234566778888899999999999999987643 55777888889
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHHH
Q 004943 577 LGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 640 (722)
Q Consensus 577 LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~ 640 (722)
|+.+.+.+|.+++|.+.+. .+.+..+-......-|+++...||.++|+..|+.+...
T Consensus 132 LArvq~q~~k~D~AL~~L~-------t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 132 LARVQLQQKKADAALKTLD-------TIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHHHHhhhHHHHHHHHh-------ccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 9999999998888876643 34443222333456789999999999999999887765
No 176
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.91 E-value=1.8 Score=45.73 Aligned_cols=236 Identities=13% Similarity=0.087 Sum_probs=154.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHHHHHHHHHHHH
Q 004943 359 LFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNWF 438 (722)
Q Consensus 359 ~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~ 438 (722)
..++|.+.+++.+++ -|. ..-| -.-+|-.++-++...|+|.+..+.|.+.+...
T Consensus 42 ~p~~Al~sF~kVlel-------EgE-----------KgeW--------GFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYI 95 (440)
T KOG1464|consen 42 EPKEALSSFQKVLEL-------EGE-----------KGEW--------GFKALKQMIKINFRLGNYKEMMERYKQLLTYI 95 (440)
T ss_pred CHHHHHHHHHHHHhc-------ccc-----------cchh--------HHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 456788888888877 122 3346 44556778999999999999999999999988
Q ss_pred HhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHH---HHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcc
Q 004943 439 IRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVE---AAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGP 515 (722)
Q Consensus 439 ~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~---AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~ 515 (722)
+..-..- ..+-.+...+--+ ..-.+.+--...|+. ||+-+.+...+--.+.-+|-+|..+|++......+..+..
T Consensus 96 kSAVTrN-ySEKsIN~IlDyi-StS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~ 173 (440)
T KOG1464|consen 96 KSAVTRN-YSEKSINSILDYI-STSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQ 173 (440)
T ss_pred HHHHhcc-ccHHHHHHHHHHH-hhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHH
Confidence 7743321 1122222222222 122222222333333 3344444445556667788899988888777777766655
Q ss_pred hhcccccccChH-----HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHH
Q 004943 516 VYQMKDTINGVR-----EEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQA 590 (722)
Q Consensus 516 l~r~~~~~~~~~-----~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA 590 (722)
-|..-+..-+.+ -+.+++- -..|..+.+--.-+..|++||.+ +..+-++.+.+.+.-.=|..+++.|.+++|
T Consensus 174 SCq~edGedD~kKGtQLLEiYAlE--IQmYT~qKnNKkLK~lYeqalhi-KSAIPHPlImGvIRECGGKMHlreg~fe~A 250 (440)
T KOG1464|consen 174 SCQTEDGEDDQKKGTQLLEIYALE--IQMYTEQKNNKKLKALYEQALHI-KSAIPHPLIMGVIRECGGKMHLREGEFEKA 250 (440)
T ss_pred HhccccCchhhhccchhhhhHhhH--hhhhhhhcccHHHHHHHHHHHHh-hccCCchHHHhHHHHcCCccccccchHHHH
Confidence 444332111110 1223332 24566777888889999999999 457989999888888889999999999999
Q ss_pred HHHHHHHHHHHHHcCChh-HHHHHHHHHHHHHHHcC
Q 004943 591 REILRSSLTLAKKLYDIP-TQIWALSVLTALYQQLG 625 (722)
Q Consensus 591 ~~~l~~Al~lAkki~D~~-~q~~al~~L~~l~~~~G 625 (722)
---+=+|+.-..+.|.+. ++.--+..|+.+....|
T Consensus 251 hTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 251 HTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred HhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcC
Confidence 877777887777777653 34444567888887777
No 177
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.89 E-value=6.4 Score=41.92 Aligned_cols=228 Identities=12% Similarity=-0.012 Sum_probs=117.4
Q ss_pred HHHHHHHHHhhccCC-ChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhC
Q 004943 344 ALVDLMVVILGRPKG-LFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRS 422 (722)
Q Consensus 344 aLvylls~~~~~~kg-~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g 422 (722)
+-+++-.|.....++ .+++|.+++++|.++++.. .+.. ..+ .-+.-|+..+|..++.+++.-+
T Consensus 35 a~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~-~~~~-~~~--------------~~~~elr~~iL~~La~~~l~~~ 98 (278)
T PF08631_consen 35 ARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKP-GKMD-KLS--------------PDGSELRLSILRLLANAYLEWD 98 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhh-hhcc-ccC--------------CcHHHHHHHHHHHHHHHHHcCC
Confidence 334444455555566 9999999999999995441 1111 111 0122347788888999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHhcC
Q 004943 423 GFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITE-SKSMQAMCHAYAAVSYFCIG 501 (722)
Q Consensus 423 ~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~-~~~~~A~allnla~v~l~~G 501 (722)
.++...+...-.-.+-.++|+..... .+.+ .+....++.+++...+...++... .......++..+-...-.
T Consensus 99 ~~~~~~ka~~~l~~l~~e~~~~~~~~---~L~l--~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~-- 171 (278)
T PF08631_consen 99 TYESVEKALNALRLLESEYGNKPEVF---LLKL--EILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEK-- 171 (278)
T ss_pred ChHHHHHHHHHHHHHHHhCCCCcHHH---HHHH--HHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhh--
Confidence 88866665444444455678753221 1111 222228899999999987766543 222333332222222211
Q ss_pred ChhHHHHHH-HHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHH--HHHHHHHHH----HHHHhcCChHHHH--H
Q 004943 502 DAESSSQAI-DLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEA--RNRLAKGLQ----IAHNHMGNLQLVS--Q 572 (722)
Q Consensus 502 ~~e~a~~aL-~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eA--k~~L~qAL~----la~~~~gd~~l~a--~ 572 (722)
+++.+...+ .++...+..+.+. .-+++-....+.. ...++.... .+-+++-+. ....+++..-..+ .
T Consensus 172 ~~~~a~~~ld~~l~~r~~~~~~~--~~e~~vl~~~~~~--~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~ 247 (278)
T PF08631_consen 172 SPELAAFCLDYLLLNRFKSSEDQ--WLEKLVLTRVLLT--TQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHT 247 (278)
T ss_pred CcHHHHHHHHHHHHHHhCCChhH--HHHHHHHHHHHHH--cCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 233333333 3333333333221 3234433433322 222222222 333333333 3222333321111 1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHH
Q 004943 573 YLTILGNLALALHDTVQAREILRSSL 598 (722)
Q Consensus 573 ~L~~LG~~~~a~g~~~qA~~~l~~Al 598 (722)
.|=.-|..++..+++.+|.+.++-|+
T Consensus 248 LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 248 LLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 22334778888899999998888766
No 178
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.83 E-value=0.059 Score=39.30 Aligned_cols=37 Identities=24% Similarity=0.226 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 004943 530 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGN 566 (722)
Q Consensus 530 A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd 566 (722)
+.++.++|.++..+|++++|..++++++++.++-.|+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~ 38 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGP 38 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcc
Confidence 5689999999999999999999999999997654455
No 179
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.83 E-value=0.061 Score=39.22 Aligned_cols=35 Identities=26% Similarity=0.257 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHc
Q 004943 570 VSQYLTILGNLALALHDTVQAREILRSSLTLAKKL 604 (722)
Q Consensus 570 ~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki 604 (722)
++.+++.||.+|...|++++|++++++++.+.+++
T Consensus 1 ta~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 35 (42)
T PF13374_consen 1 TASALNNLANAYRAQGRYEEALELLEEALEIRERL 35 (42)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred CHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999988
No 180
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=94.78 E-value=0.39 Score=58.81 Aligned_cols=148 Identities=11% Similarity=-0.050 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhH--HHHHHHHhcch---------hcc
Q 004943 451 MIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES--SSQAIDLIGPV---------YQM 519 (722)
Q Consensus 451 ~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~--a~~aL~l~~~l---------~r~ 519 (722)
-+...+...+...|++++|..++..++....+. ...+..+|+++...+++.. .-.+++....- |..
T Consensus 32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~---i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~~ 108 (906)
T PRK14720 32 KELDDLIDAYKSENLTDEAKDICEEHLKEHKKS---ISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICDK 108 (906)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcc---eehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHHHHH
Confidence 345556666789999999999998776654443 3445666788888787654 23444333221 111
Q ss_pred cccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 004943 520 KDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLT 599 (722)
Q Consensus 520 ~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~ 599 (722)
.++.+ +.-.+++.+|.+|-..|++.+|...++++|++- .--+.++|.+|..+... +.++|+.|+..|+.
T Consensus 109 i~~~~---~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-------~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~ 177 (906)
T PRK14720 109 ILLYG---ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-------RDNPEIVKKLATSYEEE-DKEKAITYLKKAIY 177 (906)
T ss_pred HHhhh---hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 11111 123699999999999999999999999999992 33467999999999999 99999999999987
Q ss_pred HH--HHcCChhHHHH
Q 004943 600 LA--KKLYDIPTQIW 612 (722)
Q Consensus 600 lA--kki~D~~~q~~ 612 (722)
.. ++..+..-+.|
T Consensus 178 ~~i~~kq~~~~~e~W 192 (906)
T PRK14720 178 RFIKKKQYVGIEEIW 192 (906)
T ss_pred HHHhhhcchHHHHHH
Confidence 64 33333333444
No 181
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.77 E-value=3.6 Score=38.51 Aligned_cols=202 Identities=22% Similarity=0.172 Sum_probs=138.2
Q ss_pred HhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHH
Q 004943 412 ENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHA 491 (722)
Q Consensus 412 e~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~all 491 (722)
...+......+++..+...+...... ... ......+...|.+....+.+..|...+..++....... ....
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 133 (291)
T COG0457 63 LLLALALLKLGRLEEALELLEKALEL-ELL-----PNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD---LAEA 133 (291)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhh-hhc-----cchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc---hHHH
Confidence 44688888999999999998888876 111 23457788899999999999999999988876544431 1111
Q ss_pred HHHH-HHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHH
Q 004943 492 YAAV-SYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLV 570 (722)
Q Consensus 492 nla~-v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~ 570 (722)
..+. ++...|+++.+...+...... ... ....+......+..+...+++.+|...+.+++..... . .
T Consensus 134 ~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~ 201 (291)
T COG0457 134 LLALGALYELGDYEEALELYEKALEL---DPE---LNELAEALLALGALLEALGRYEEALELLEKALKLNPD-D-----D 201 (291)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc---CCC---ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcc-c-----c
Confidence 1222 777888887755555544111 100 0114455666666677899999999999999999542 1 4
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHHH
Q 004943 571 SQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 640 (722)
Q Consensus 571 a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~ 640 (722)
......++..+...++.++|...+..++..... .......++..+...|+...+...+......
T Consensus 202 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 202 AEALLNLGLLYLKLGKYEEALEYYEKALELDPD------NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc------cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 467888999999999999999999999888776 2334445555555555556665555444443
No 182
>PRK15331 chaperone protein SicA; Provisional
Probab=94.74 E-value=0.29 Score=48.13 Aligned_cols=114 Identities=13% Similarity=0.034 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChh
Q 004943 529 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIP 608 (722)
Q Consensus 529 ~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~ 608 (722)
.-...+..|.-...+|++++|...|+=-... ...| ......||.++...+++++|.+.+.-|..+...-+.|
T Consensus 36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~---d~~n----~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p- 107 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIY---DFYN----PDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRP- 107 (165)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcCc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCc-
Confidence 3457777888888999999999999865443 2444 3467999999999999999999999999988644443
Q ss_pred HHHHHHHHHHHHHHHcCCchhHhHHHHHHHHHHHHHhHHHHHhhhchhhHHHHhhhcchhh
Q 004943 609 TQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDELQKRLADAYSSIHHIELISKVKLEVQ 669 (722)
Q Consensus 609 ~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~l~~~~~~a~~~~~h~~l~~~~~~~~~ 669 (722)
..-.|.+|...|+..+|+..|+.... .|+|..|-+|...-+.
T Consensus 108 -----~f~agqC~l~l~~~~~A~~~f~~a~~--------------~~~~~~l~~~A~~~L~ 149 (165)
T PRK15331 108 -----VFFTGQCQLLMRKAAKARQCFELVNE--------------RTEDESLRAKALVYLE 149 (165)
T ss_pred -----cchHHHHHHHhCCHHHHHHHHHHHHh--------------CcchHHHHHHHHHHHH
Confidence 45569999999999999999888776 3667778777555443
No 183
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.73 E-value=0.21 Score=53.30 Aligned_cols=112 Identities=11% Similarity=0.006 Sum_probs=82.2
Q ss_pred HHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHHHH
Q 004943 351 VILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEA 430 (722)
Q Consensus 351 ~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~~ 430 (722)
|--.+..++|.+|...|.+|+.+ + +. -+..+.|-+.+|...|.|+.|++.
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l---------~-P~--------------------nAVyycNRAAAy~~Lg~~~~AVkD 137 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIEL---------D-PT--------------------NAVYYCNRAAAYSKLGEYEDAVKD 137 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhc---------C-CC--------------------cchHHHHHHHHHHHhcchHHHHHH
Confidence 44566677888888888888887 2 22 244456788899999999999999
Q ss_pred HHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCCh
Q 004943 431 LVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDA 503 (722)
Q Consensus 431 l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~ 503 (722)
.+.|+.+- ..-+-.+-.+|..+..+|+|++|++-|+.||.+-.+-. ....||.++-..++.+
T Consensus 138 ce~Al~iD--------p~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne---~~K~nL~~Ae~~l~e~ 199 (304)
T KOG0553|consen 138 CESALSID--------PHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNE---SYKSNLKIAEQKLNEP 199 (304)
T ss_pred HHHHHhcC--------hHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcH---HHHHHHHHHHHHhcCC
Confidence 88888852 23456788899999999999999999999987755433 4455555555444443
No 184
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=94.62 E-value=3.2 Score=45.35 Aligned_cols=250 Identities=11% Similarity=0.077 Sum_probs=151.1
Q ss_pred HHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHHH
Q 004943 350 VVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQE 429 (722)
Q Consensus 350 s~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~ 429 (722)
-+.+.+-.|.+++|+.-+...|.. ++.. +..+.++... +-+- +...|.+...-+...||+..|++
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~---------~~s~--~~~~eaqskl-~~~~---e~~~l~~ql~s~~~~GD~~~ai~ 176 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQH---------EPSN--GLVLEAQSKL-ALIQ---EHWVLVQQLKSASGSGDCQNAIE 176 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhc---------CCCc--chhHHHHHHH-HhHH---HHHHHHHHHHHHhcCCchhhHHH
Confidence 366677889999999888877766 1111 1112221111 0011 33445566777888999999999
Q ss_pred HHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhH----
Q 004943 430 ALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES---- 505 (722)
Q Consensus 430 ~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~---- 505 (722)
.+.+.++++ ..-+-++..+..++.+.|....|..-...+-+++.+..- ...-++.++...||.+.
T Consensus 177 ~i~~llEi~--------~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe---~~ykis~L~Y~vgd~~~sL~~ 245 (504)
T KOG0624|consen 177 MITHLLEIQ--------PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTE---GHYKISQLLYTVGDAENSLKE 245 (504)
T ss_pred HHHHHHhcC--------cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchH---HHHHHHHHHHhhhhHHHHHHH
Confidence 999999964 345567888899999999999999999888888776531 12333455556677543
Q ss_pred HHHHHHHhcchhccc-ccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhC
Q 004943 506 SSQAIDLIGPVYQMK-DTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALAL 584 (722)
Q Consensus 506 a~~aL~l~~~l~r~~-~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~ 584 (722)
.+++|.+ .|-...| ..+..+ .+..-....+.....++++.++....+..|+- .-+ .....-.+...|...+...
T Consensus 246 iRECLKl-dpdHK~Cf~~YKkl-kKv~K~les~e~~ie~~~~t~cle~ge~vlk~-ep~--~~~ir~~~~r~~c~C~~~d 320 (504)
T KOG0624|consen 246 IRECLKL-DPDHKLCFPFYKKL-KKVVKSLESAEQAIEEKHWTECLEAGEKVLKN-EPE--ETMIRYNGFRVLCTCYRED 320 (504)
T ss_pred HHHHHcc-CcchhhHHHHHHHH-HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc-CCc--ccceeeeeeheeeeccccc
Confidence 4444433 2221111 111112 12334445556666778888888777777765 111 1222234455566677778
Q ss_pred CChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHH
Q 004943 585 HDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEY 636 (722)
Q Consensus 585 g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~ 636 (722)
|++.+|..-+.+.|.+-. ..+.++..-++.|.....++.|..-|+.
T Consensus 321 ~~~~eAiqqC~evL~~d~------~dv~~l~dRAeA~l~dE~YD~AI~dye~ 366 (504)
T KOG0624|consen 321 EQFGEAIQQCKEVLDIDP------DDVQVLCDRAEAYLGDEMYDDAIHDYEK 366 (504)
T ss_pred CCHHHHHHHHHHHHhcCc------hHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 888888888877776431 2244555556666665555555444443
No 185
>PRK15331 chaperone protein SicA; Provisional
Probab=94.53 E-value=0.39 Score=47.24 Aligned_cols=102 Identities=14% Similarity=-0.027 Sum_probs=76.8
Q ss_pred chhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHH
Q 004943 340 SAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVEL 419 (722)
Q Consensus 340 ~~l~aLvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l 419 (722)
+++|...| -+..+|++++|+++++--... +... .....+||.|+-
T Consensus 38 e~iY~~Ay-----~~y~~Gk~~eA~~~F~~L~~~---------d~~n---------------------~~Y~~GLaa~~Q 82 (165)
T PRK15331 38 DGLYAHAY-----EFYNQGRLDEAETFFRFLCIY---------DFYN---------------------PDYTMGLAAVCQ 82 (165)
T ss_pred HHHHHHHH-----HHHHCCCHHHHHHHHHHHHHh---------CcCc---------------------HHHHHHHHHHHH
Confidence 44566644 567899999999988754433 1111 111246899999
Q ss_pred hhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchh
Q 004943 420 TRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS 484 (722)
Q Consensus 420 ~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~ 484 (722)
..++|.+|+..|.-|..+-...|.. ....|.++..+|+.+.|...|..++...++..
T Consensus 83 ~~k~y~~Ai~~Y~~A~~l~~~dp~p--------~f~agqC~l~l~~~~~A~~~f~~a~~~~~~~~ 139 (165)
T PRK15331 83 LKKQFQKACDLYAVAFTLLKNDYRP--------VFFTGQCQLLMRKAAKARQCFELVNERTEDES 139 (165)
T ss_pred HHHHHHHHHHHHHHHHHcccCCCCc--------cchHHHHHHHhCCHHHHHHHHHHHHhCcchHH
Confidence 9999999999999999987666664 56789999999999999999988887555443
No 186
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.53 E-value=4.1 Score=38.10 Aligned_cols=210 Identities=19% Similarity=0.151 Sum_probs=135.8
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhC
Q 004943 343 YALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRS 422 (722)
Q Consensus 343 ~aLvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g 422 (722)
....+...+......+.+.++...+..++.. ..... ....+...+......+
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~--------------------~~~~~~~~~~~~~~~~ 109 (291)
T COG0457 58 LAGLLLLLALALLKLGRLEEALELLEKALEL--------ELLPN--------------------LAEALLNLGLLLEALG 109 (291)
T ss_pred chHHHHHHHHHHHHcccHHHHHHHHHHHHhh--------hhccc--------------------hHHHHHHHHHHHHHHh
Confidence 3455556677777788888887777777653 00011 2223345677777777
Q ss_pred CHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcC
Q 004943 423 GFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQ-YAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIG 501 (722)
Q Consensus 423 ~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~-~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G 501 (722)
++.++.+.+..+........ ......+. ++...|+++.|...|..++................+..+...|
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (291)
T COG0457 110 KYEEALELLEKALALDPDPD--------LAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALG 181 (291)
T ss_pred hHHHHHHHHHHHHcCCCCcc--------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhc
Confidence 78888888777777544331 22333333 8899999999999999986632211233333344444466666
Q ss_pred ChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 004943 502 DAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLA 581 (722)
Q Consensus 502 ~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~ 581 (722)
+++.+...+.......... ....+..++..+...|++.+|...+.+++..... .......++..+
T Consensus 182 ~~~~a~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~~~~~~~~~ 246 (291)
T COG0457 182 RYEEALELLEKALKLNPDD--------DAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-------NAEALYNLALLL 246 (291)
T ss_pred CHHHHHHHHHHHHhhCccc--------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-------cHHHHhhHHHHH
Confidence 7666555554443331110 2346778888888999999999999999998431 445677777877
Q ss_pred HhCCChHHHHHHHHHHHHHHHH
Q 004943 582 LALHDTVQAREILRSSLTLAKK 603 (722)
Q Consensus 582 ~a~g~~~qA~~~l~~Al~lAkk 603 (722)
...|..+++...+..+......
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 247 LELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHcCCHHHHHHHHHHHHHhCcc
Confidence 7777788888888888776655
No 187
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=94.51 E-value=8.6 Score=46.31 Aligned_cols=230 Identities=19% Similarity=0.121 Sum_probs=129.7
Q ss_pred hhHHHHHhhCCHHHHHHHHHHHHH----HH---HhCCc-hh----hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--
Q 004943 413 NKVAVELTRSGFVEAQEALVQMKN----WF---IRFPT-IL----QACESMIEMLRGQYAHSVGCYSEAAFHYVEAAK-- 478 (722)
Q Consensus 413 ~Lg~~~l~~g~~~eA~~~l~~Al~----l~---~~~~d-~~----~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~-- 478 (722)
+-+--...++|...|++.|+.+-. ++ .+.|. +. ..-...++..=|.|..+.|.++.|+..|..|-.
T Consensus 863 ~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~f 942 (1416)
T KOG3617|consen 863 NYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYF 942 (1416)
T ss_pred HHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhh
Confidence 345555667788888888876532 22 33333 11 112346677889999999999999999987633
Q ss_pred -----------------hhcchhHHHHHHHHHHHHHHhcCChhH----H--HHHHHHhcchhccccc------------c
Q 004943 479 -----------------ITESKSMQAMCHAYAAVSYFCIGDAES----S--SQAIDLIGPVYQMKDT------------I 523 (722)
Q Consensus 479 -----------------l~~~~~~~A~allnla~v~l~~G~~e~----a--~~aL~l~~~l~r~~~~------------~ 523 (722)
+++..+..|-| ..+|.-|-..|+..+ + .+++.-+-.+|+.++= .
T Consensus 943 s~VrI~C~qGk~~kAa~iA~esgd~AAc-YhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~ 1021 (1416)
T KOG3617|consen 943 SMVRIKCIQGKTDKAARIAEESGDKAAC-YHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGG 1021 (1416)
T ss_pred hheeeEeeccCchHHHHHHHhcccHHHH-HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCc
Confidence 22223344444 445666767676543 1 2333333333443310 0
Q ss_pred cChHHHHHHHHHHH-------HHHHhcCCHHHHHHHHH-----HHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHH
Q 004943 524 NGVREEASLHFAYG-------LLLMRQQDFQEARNRLA-----KGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAR 591 (722)
Q Consensus 524 ~~~~~~A~al~~lG-------~~~~~~G~~~eAk~~L~-----qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~ 591 (722)
.+.-..|.+|-.+| .+|++.|-+..|.+.-= .||++-. .+.|.---...++.=++.+....+++.|.
T Consensus 1022 ~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa-~DLd~~sDp~ll~RcadFF~~~~qyekAV 1100 (1416)
T KOG3617|consen 1022 SDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIA-KDLDAGSDPKLLRRCADFFENNQQYEKAV 1100 (1416)
T ss_pred hhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHH-HhcCCCCCHHHHHHHHHHHHhHHHHHHHH
Confidence 11111233333344 34455555544443321 2344432 23333334455666677777777888887
Q ss_pred HHH------HHHHHHHHHc-----------------CChhH--HHHHHHHHHHHHHHcCCchhHhHHHHHHHHHHHHH
Q 004943 592 EIL------RSSLTLAKKL-----------------YDIPT--QIWALSVLTALYQQLGDRGNEMENDEYRRKKLDEL 644 (722)
Q Consensus 592 ~~l------~~Al~lAkki-----------------~D~~~--q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~l 644 (722)
..+ ..|+.+.+.- ++++. ....+.-++++...+|++..|-.-|..+..+...+
T Consensus 1101 ~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdKl~AM 1178 (1416)
T KOG3617|consen 1101 NLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDKLSAM 1178 (1416)
T ss_pred HHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhHHHHH
Confidence 554 5566655543 33333 34566788999999999999888888777766553
No 188
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.51 E-value=5.6 Score=42.13 Aligned_cols=192 Identities=15% Similarity=0.135 Sum_probs=123.1
Q ss_pred CCcccccCcchhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHH
Q 004943 331 PMDGEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQF 410 (722)
Q Consensus 331 ~~~~~WLpk~~l~aLvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~l 410 (722)
|+..+|| +|+.- ...|.--+....+..-+..++++++..-. ...+|+.+ ..|+.+.- .+
T Consensus 121 PFsmR~l-----hAe~~-------~~lgnpqesLdRl~~L~~~V~~ii~~~e~-~~~~ESsv---~lW~KRl~---~V-- 179 (366)
T KOG2796|consen 121 PFSMRIL-----HAELQ-------QYLGNPQESLDRLHKLKTVVSKILANLEQ-GLAEESSI---RLWRKRLG---RV-- 179 (366)
T ss_pred cHHHHHH-----HHHHH-------HhcCCcHHHHHHHHHHHHHHHHHHHHHHh-ccchhhHH---HHHHHHHH---HH--
Confidence 6778886 44432 22233344444555555555555543322 12234444 45765552 11
Q ss_pred HHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcch---hHHH
Q 004943 411 LENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK---SMQA 487 (722)
Q Consensus 411 Le~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~---~~~A 487 (722)
-+.++-+....++|.-....+...++ ..|.. .+.+...+|.+.+..|+.+.|..+|+..-+..+.. ....
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~---~~~e~----~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~ 252 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIK---YYPEQ----EPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKI 252 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHH---hCCcc----cHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhH
Confidence 13346677788999999999888887 34332 35667889999999999999999998655544333 3566
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 004943 488 MCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQI 559 (722)
Q Consensus 488 ~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~l 559 (722)
.+..|.+.+|+-..++.++.++.+.+-.. ... -+.+.++.+...+..|+...|...++++++.
T Consensus 253 ~V~~n~a~i~lg~nn~a~a~r~~~~i~~~--D~~-------~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 253 MVLMNSAFLHLGQNNFAEAHRFFTEILRM--DPR-------NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred HHHhhhhhheecccchHHHHHHHhhcccc--CCC-------chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 77888888888877776666665543322 111 1245666667777789999999999988776
No 189
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=94.45 E-value=1.6 Score=50.98 Aligned_cols=198 Identities=11% Similarity=0.056 Sum_probs=125.3
Q ss_pred HHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHHHH
Q 004943 351 VILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEA 430 (722)
Q Consensus 351 ~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~~ 430 (722)
|...-.-|+-++|-.+-+.|++. |..+ ..=| ++ +|.+++..-+|++|+++
T Consensus 48 GL~L~~lg~~~ea~~~vr~glr~---------d~~S--------~vCw--------Hv-----~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 48 GLTLNCLGKKEEAYELVRLGLRN---------DLKS--------HVCW--------HV-----LGLLQRSDKKYDEAIKC 97 (700)
T ss_pred cchhhcccchHHHHHHHHHHhcc---------Cccc--------chhH--------HH-----HHHHHhhhhhHHHHHHH
Confidence 44555557778888888887774 3322 3456 22 49999999999999999
Q ss_pred HHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHH
Q 004943 431 LVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAI 510 (722)
Q Consensus 431 l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL 510 (722)
|..|+.+-. |. -.+++-+...-..+|+|+....-=. .+.+...+.-.-+...|..++..|++..+...+
T Consensus 98 y~nAl~~~~---dN-----~qilrDlslLQ~QmRd~~~~~~tr~---~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il 166 (700)
T KOG1156|consen 98 YRNALKIEK---DN-----LQILRDLSLLQIQMRDYEGYLETRN---QLLQLRPSQRASWIGFAVAQHLLGEYKMALEIL 166 (700)
T ss_pred HHHHHhcCC---Cc-----HHHHHHHHHHHHHHHhhhhHHHHHH---HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999743 32 1344445555555666665544332 333444433344556677777778887766666
Q ss_pred HHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHH
Q 004943 511 DLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQA 590 (722)
Q Consensus 511 ~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA 590 (722)
+.....+....+ ....+...++.-...++...|++++|..++..== .++-|.- ...-..+.++...++.++|
T Consensus 167 ~ef~~t~~~~~s-~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e----~~i~Dkl---a~~e~ka~l~~kl~~lEeA 238 (700)
T KOG1156|consen 167 EEFEKTQNTSPS-KEDYEHSELLLYQNQILIEAGSLQKALEHLLDNE----KQIVDKL---AFEETKADLLMKLGQLEEA 238 (700)
T ss_pred HHHHHhhccCCC-HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhh----hHHHHHH---HHhhhHHHHHHHHhhHHhH
Confidence 655554431211 2233455666666778888899888887776431 1233322 2455678889999999999
Q ss_pred HHHHHHH
Q 004943 591 REILRSS 597 (722)
Q Consensus 591 ~~~l~~A 597 (722)
.+.++.=
T Consensus 239 ~~~y~~L 245 (700)
T KOG1156|consen 239 VKVYRRL 245 (700)
T ss_pred HHHHHHH
Confidence 9887653
No 190
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.31 E-value=0.094 Score=36.61 Aligned_cols=30 Identities=20% Similarity=0.356 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 004943 530 ASLHFAYGLLLMRQQDFQEARNRLAKGLQI 559 (722)
Q Consensus 530 A~al~~lG~~~~~~G~~~eAk~~L~qAL~l 559 (722)
|.+++.+|.+++.+|++.+|+.++++++++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999988
No 191
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.26 E-value=0.37 Score=49.61 Aligned_cols=97 Identities=23% Similarity=0.204 Sum_probs=71.0
Q ss_pred hCCHHHHHHHHHHHHHhhc----chhHHHHHHHHHHHHHHhcCChhH----HHHHHHHhcchhcccccccChHHHHHHHH
Q 004943 463 VGCYSEAAFHYVEAAKITE----SKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHF 534 (722)
Q Consensus 463 lG~~~~Al~~f~~AL~l~~----~~~~~A~allnla~v~l~~G~~e~----a~~aL~l~~~l~r~~~~~~~~~~~A~al~ 534 (722)
...+++|.+.|.-|+--+. ...-.|...+.+|++|-..|+.+. ..+|++.....+...+.....-.++..++
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 4466777777766664332 234778888999999999898543 77888777666544332122224677889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH
Q 004943 535 AYGLLLMRQQDFQEARNRLAKGLQI 559 (722)
Q Consensus 535 ~lG~~~~~~G~~~eAk~~L~qAL~l 559 (722)
-+|.++.+.|++++|++.+.+.+..
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 9999999999999999999999877
No 192
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.20 E-value=0.42 Score=50.43 Aligned_cols=100 Identities=17% Similarity=0.122 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHH-H
Q 004943 453 EMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEA-S 531 (722)
Q Consensus 453 ~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A-~ 531 (722)
+|..+.-+..-|+|..|..-|..-++...+..-...+...||.++..+|+++.+...+..+-.-+-.+ . +| .
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s---~----KApd 216 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKS---P----KAPD 216 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCC---C----CChH
Confidence 33444444567888999999988888777777777888888999999898877555554333322222 1 43 6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 004943 532 LHFAYGLLLMRQQDFQEARNRLAKGLQI 559 (722)
Q Consensus 532 al~~lG~~~~~~G~~~eAk~~L~qAL~l 559 (722)
+++-+|......|+.++|+..|++..+-
T Consensus 217 allKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 217 ALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 8999999999999999999999998764
No 193
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.17 E-value=0.75 Score=49.14 Aligned_cols=114 Identities=12% Similarity=0.095 Sum_probs=79.0
Q ss_pred HHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCCh---hHHH
Q 004943 431 LVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDA---ESSS 507 (722)
Q Consensus 431 l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~---e~a~ 507 (722)
..++..-.++.|.... -+.++|.+++.+|+++.|+.-|..|.++.++....-.. +|.++....+. ....
T Consensus 142 ~a~Le~~L~~nP~d~e-----gW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g---~aeaL~~~a~~~~ta~a~ 213 (287)
T COG4235 142 IARLETHLQQNPGDAE-----GWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLG---LAEALYYQAGQQMTAKAR 213 (287)
T ss_pred HHHHHHHHHhCCCCch-----hHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHH---HHHHHHHhcCCcccHHHH
Confidence 3444445667776433 38899999999999999999999999999887533222 23333332332 2366
Q ss_pred HHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 004943 508 QAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAH 561 (722)
Q Consensus 508 ~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~ 561 (722)
++|..+... ++ . ...+++-+|..++.+|+|.+|...++.-|+..-
T Consensus 214 ~ll~~al~~--D~---~----~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 214 ALLRQALAL--DP---A----NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHhc--CC---c----cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 666655443 22 2 224666688888999999999999999999854
No 194
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=94.15 E-value=2.2 Score=39.90 Aligned_cols=110 Identities=15% Similarity=0.195 Sum_probs=73.0
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhcchh---------HHHHHHHHHHHHHHhcCChhH----HHHHHHHhcchhcccc
Q 004943 455 LRGQYAHSVGCYSEAAFHYVEAAKITESKS---------MQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKD 521 (722)
Q Consensus 455 llG~~~~alG~~~~Al~~f~~AL~l~~~~~---------~~A~allnla~v~l~~G~~e~----a~~aL~l~~~l~r~~~ 521 (722)
.-|.-...-|.|++|..-|+.|+..++..+ --++|.-.|+-.+..+|++++ +..+|.-++.-...+.
T Consensus 14 s~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~q 93 (144)
T PF12968_consen 14 SDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQ 93 (144)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTS
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccc
Confidence 344455567899999999999999887653 447888888899999999987 4444444433222222
Q ss_pred cccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 004943 522 TINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGN 566 (722)
Q Consensus 522 ~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd 566 (722)
+.+.++ ..+-++-|......|+.++|...|+.|-++-.+.-|.
T Consensus 94 deGklW--IaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKGE 136 (144)
T PF12968_consen 94 DEGKLW--IAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKGE 136 (144)
T ss_dssp THHHHH--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S-
T ss_pred ccchhH--HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCC
Confidence 223332 3456667777789999999999999999987655554
No 195
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.14 E-value=0.88 Score=46.71 Aligned_cols=199 Identities=12% Similarity=0.043 Sum_probs=119.3
Q ss_pred HHHHHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHH
Q 004943 407 LMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQ 486 (722)
Q Consensus 407 ~a~lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~ 486 (722)
++.++..-|..|-..|=|+.|.-.+.+++.+. |++ +-+.|.+|.|..-.|+|+.|.+.|...+.+- ++-
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~---P~m-----~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD---p~y 132 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIR---PDM-----PEVFNYLGIYLTQAGNFDAAYEAFDSVLELD---PTY 132 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcC---CCc-----HHHHHHHHHHHHhcccchHHHHHhhhHhccC---Ccc
Confidence 66677778888888999999999999999874 443 4568999999999999999999997655442 244
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHHHHHhcC
Q 004943 487 AMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAK-GLQIAHNHMG 565 (722)
Q Consensus 487 A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~q-AL~la~~~~g 565 (722)
.++.+|-|+...--|++.=+.+- +..+|....+. + -++--++.. ...-++.+|+..|.+ +-+..+
T Consensus 133 ~Ya~lNRgi~~YY~gR~~LAq~d---~~~fYQ~D~~D--P-fR~LWLYl~----E~k~dP~~A~tnL~qR~~~~d~---- 198 (297)
T COG4785 133 NYAHLNRGIALYYGGRYKLAQDD---LLAFYQDDPND--P-FRSLWLYLN----EQKLDPKQAKTNLKQRAEKSDK---- 198 (297)
T ss_pred hHHHhccceeeeecCchHhhHHH---HHHHHhcCCCC--h-HHHHHHHHH----HhhCCHHHHHHHHHHHHHhccH----
Confidence 66777778776666776533222 22333322221 1 133322221 245567777665543 333322
Q ss_pred ChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhH--HHHHHHHHHHHHHHcCCchhHhHHHHHHHH
Q 004943 566 NLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPT--QIWALSVLTALYQQLGDRGNEMENDEYRRK 639 (722)
Q Consensus 566 d~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~--q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~ 639 (722)
+.++.-.+-.-||.+.-. ...+++-+-|+.. .... --.+..-|+..|...|+...|...|..+..
T Consensus 199 e~WG~~iV~~yLgkiS~e--------~l~~~~~a~a~~n-~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 199 EQWGWNIVEFYLGKISEE--------TLMERLKADATDN-TSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred hhhhHHHHHHHHhhccHH--------HHHHHHHhhccch-HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 346666666666665422 1122222222210 0001 123556788888888888888877776654
No 196
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.14 E-value=0.11 Score=36.63 Aligned_cols=30 Identities=20% Similarity=0.366 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 004943 530 ASLHFAYGLLLMRQQDFQEARNRLAKGLQI 559 (722)
Q Consensus 530 A~al~~lG~~~~~~G~~~eAk~~L~qAL~l 559 (722)
|.+++.+|.++..+|++++|..++++||++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 457899999999999999999999999998
No 197
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.09 E-value=12 Score=41.70 Aligned_cols=210 Identities=16% Similarity=0.129 Sum_probs=130.0
Q ss_pred HHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHHH
Q 004943 350 VVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQE 429 (722)
Q Consensus 350 s~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~ 429 (722)
+++...-.|+-..|.|...++-+. +.. |.+. .+.+| =+...+..|+++.|.+
T Consensus 90 tGliAagAGda~lARkmt~~~~~l----lss--Dqep--------------------LIhlL--eAQaal~eG~~~~Ar~ 141 (531)
T COG3898 90 TGLIAAGAGDASLARKMTARASKL----LSS--DQEP--------------------LIHLL--EAQAALLEGDYEDARK 141 (531)
T ss_pred hhhhhhccCchHHHHHHHHHHHhh----hhc--cchH--------------------HHHHH--HHHHHHhcCchHHHHH
Confidence 355555667777777777766655 221 1121 12222 2556778999999999
Q ss_pred HHHHHHHHHHhCCchhhhhHHHHHHHHHHHH--HHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHH
Q 004943 430 ALVQMKNWFIRFPTILQACESMIEMLRGQYA--HSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSS 507 (722)
Q Consensus 430 ~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~--~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~ 507 (722)
-|+.+++ .|. -..+-+.|+|. +..|.++.|..|-..|-........-+.+.+ ...+..||.+.+.
T Consensus 142 kfeAMl~----dPE------tRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtL---e~r~~~gdWd~Al 208 (531)
T COG3898 142 KFEAMLD----DPE------TRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATL---EARCAAGDWDGAL 208 (531)
T ss_pred HHHHHhc----ChH------HHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHH---HHHHhcCChHHHH
Confidence 9998876 343 35566777774 5678999999998888777766654444433 2345668888777
Q ss_pred HHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCCh
Q 004943 508 QAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDT 587 (722)
Q Consensus 508 ~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~ 587 (722)
+.++..+.. +-.+...-.+.+|.-+...+.- .-..++..|+..-.+++++.- .+-. .-+.=+..+++.|+.
T Consensus 209 kLvd~~~~~-~vie~~~aeR~rAvLLtAkA~s-~ldadp~~Ar~~A~~a~KL~p-dlvP------aav~AAralf~d~~~ 279 (531)
T COG3898 209 KLVDAQRAA-KVIEKDVAERSRAVLLTAKAMS-LLDADPASARDDALEANKLAP-DLVP------AAVVAARALFRDGNL 279 (531)
T ss_pred HHHHHHHHH-HhhchhhHHHHHHHHHHHHHHH-HhcCChHHHHHHHHHHhhcCC-ccch------HHHHHHHHHHhccch
Confidence 776655433 1111112223345444444332 346679999999999999943 2322 233345778889999
Q ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHH
Q 004943 588 VQAREILRSSLTLAKKLYDIPTQIWAL 614 (722)
Q Consensus 588 ~qA~~~l~~Al~lAkki~D~~~q~~al 614 (722)
..+-+.++.+ +|.-+++ ++|-+
T Consensus 280 rKg~~ilE~a---WK~ePHP--~ia~l 301 (531)
T COG3898 280 RKGSKILETA---WKAEPHP--DIALL 301 (531)
T ss_pred hhhhhHHHHH---HhcCCCh--HHHHH
Confidence 9988888866 4444444 44433
No 198
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.05 E-value=1.1 Score=47.14 Aligned_cols=160 Identities=15% Similarity=0.086 Sum_probs=100.1
Q ss_pred HHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHH
Q 004943 346 VDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFV 425 (722)
Q Consensus 346 vylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~ 425 (722)
+-++++++++..|.|++|.+....+..+ ++.+|+ +.|.....+++
T Consensus 110 ~~l~aa~i~~~~~~~deAl~~~~~~~~l---------------------------------E~~Al~--VqI~lk~~r~d 154 (299)
T KOG3081|consen 110 DLLLAAIIYMHDGDFDEALKALHLGENL---------------------------------EAAALN--VQILLKMHRFD 154 (299)
T ss_pred HHHHhhHHhhcCCChHHHHHHHhccchH---------------------------------HHHHHH--HHHHHHHHHHH
Confidence 4468899999999999998876664433 222222 55566667888
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHH--HhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCCh
Q 004943 426 EAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAH--SVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDA 503 (722)
Q Consensus 426 eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~--alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~ 503 (722)
-|.+.++++.++-++ ......+ -.++.. +-+.+.+|.-.|++ .++..+..-..++..|.+++++|++
T Consensus 155 ~A~~~lk~mq~ided---~tLtQLA-----~awv~la~ggek~qdAfyifeE---~s~k~~~T~~llnG~Av~~l~~~~~ 223 (299)
T KOG3081|consen 155 LAEKELKKMQQIDED---ATLTQLA-----QAWVKLATGGEKIQDAFYIFEE---LSEKTPPTPLLLNGQAVCHLQLGRY 223 (299)
T ss_pred HHHHHHHHHHccchH---HHHHHHH-----HHHHHHhccchhhhhHHHHHHH---HhcccCCChHHHccHHHHHHHhcCH
Confidence 899998888886432 1111122 223333 34478899988853 2332333334455668889999999
Q ss_pred hHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 004943 504 ESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 560 (722)
Q Consensus 504 e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la 560 (722)
+++...|+.+..- . ..+. .++-++-....++|...++-..+-.-|+..
T Consensus 224 eeAe~lL~eaL~k--d---~~dp----etL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 224 EEAESLLEEALDK--D---AKDP----ETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHHHHHHhc--c---CCCH----HHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 9877777655432 1 1222 344455555568899888777776666663
No 199
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.01 E-value=0.39 Score=50.64 Aligned_cols=102 Identities=16% Similarity=0.207 Sum_probs=82.4
Q ss_pred HHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHH
Q 004943 411 LENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCH 490 (722)
Q Consensus 411 Le~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~al 490 (722)
+++.++-+...|+|++|.+.|.. ..+.+|.- ...+.++|.+|....++|+|++|...|....+...+...---++
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~---fi~~YP~s--~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdal 218 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQA---FIKKYPNS--TYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDAL 218 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH---HHHcCCCC--cccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHH
Confidence 35678888999999999998765 44467775 45689999999999999999999999998888776655444666
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcchh
Q 004943 491 AYAAVSYFCIGDAESSSQAIDLIGPVY 517 (722)
Q Consensus 491 lnla~v~l~~G~~e~a~~aL~l~~~l~ 517 (722)
+-+|.+.-+.|+.+.+...|+.+...|
T Consensus 219 lKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 219 LKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 788888888899988888888776543
No 200
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=93.89 E-value=0.15 Score=41.54 Aligned_cols=56 Identities=23% Similarity=0.159 Sum_probs=42.7
Q ss_pred HhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcc
Q 004943 419 LTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES 482 (722)
Q Consensus 419 l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~ 482 (722)
+..|+|++|++.+++++.. .|+. .-+...+|.++...|++++|...+...+....+
T Consensus 2 l~~~~~~~A~~~~~~~l~~---~p~~-----~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR---NPDN-----PEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH---TTTS-----HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred hhccCHHHHHHHHHHHHHH---CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 4578999999999998875 4442 244678999999999999999999776665554
No 201
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.87 E-value=1 Score=43.37 Aligned_cols=91 Identities=18% Similarity=0.087 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHH
Q 004943 449 ESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVRE 528 (722)
Q Consensus 449 ~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~ 528 (722)
.+..++..|.-...-|+|++|...|+.-........--..+.+.+|.+|...|+++.+..+++.+..+.-.|.+
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~------ 82 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN------ 82 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC------
Confidence 45678999999999999999999996544444444455688899999999999998888887777665332221
Q ss_pred HHHHHHHHHHHHHhcCC
Q 004943 529 EASLHFAYGLLLMRQQD 545 (722)
Q Consensus 529 ~A~al~~lG~~~~~~G~ 545 (722)
.-++++..|+.++.+.+
T Consensus 83 vdYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 83 VDYAYYMRGLSYYEQDE 99 (142)
T ss_pred ccHHHHHHHHHHHHHhh
Confidence 34688888988887765
No 202
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.74 E-value=2.5 Score=42.16 Aligned_cols=130 Identities=17% Similarity=0.038 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhH
Q 004943 426 EAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES 505 (722)
Q Consensus 426 eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~ 505 (722)
+-++.++.-++-.+...-. .-....+..+|.++...|++++|+..|..+..-+.+.+......+++-.+.+..|++..
T Consensus 14 ~~~~~Le~elk~~~~n~~k--esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~ 91 (177)
T PF10602_consen 14 EELEKLEAELKDAKSNLGK--ESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSH 91 (177)
T ss_pred HHHHHHHHHHHHHHhccch--HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHH
Confidence 3344444444444433221 12346788999999999999999999998887777777666666777777777789887
Q ss_pred HHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 004943 506 SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 560 (722)
Q Consensus 506 a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la 560 (722)
....++.+.......++ ...+.+-.++ -|..+..+++|.+|-..|-+++...
T Consensus 92 v~~~i~ka~~~~~~~~d-~~~~nrlk~~--~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 92 VEKYIEKAESLIEKGGD-WERRNRLKVY--EGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHHhccch-HHHHHHHHHH--HHHHHHHhchHHHHHHHHHccCcCC
Confidence 66666655554333222 2222232333 4566678999999999999987664
No 203
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=93.53 E-value=0.93 Score=46.64 Aligned_cols=95 Identities=16% Similarity=0.095 Sum_probs=77.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHc-------CChhHHHHHHH
Q 004943 543 QQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKL-------YDIPTQIWALS 615 (722)
Q Consensus 543 ~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki-------~D~~~q~~al~ 615 (722)
.-.+++|...|.-||-.+.-.-.++...|....-++|+|...|+.++....++.|+....+. .....+.....
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 34577888888888888764444677889999999999999999999889999998888877 22345577889
Q ss_pred HHHHHHHHcCCchhHhHHHHHH
Q 004943 616 VLTALYQQLGDRGNEMENDEYR 637 (722)
Q Consensus 616 ~L~~l~~~~Gd~~~A~e~~~~~ 637 (722)
++|++++..|++++|..+|...
T Consensus 170 LigeL~rrlg~~~eA~~~fs~v 191 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRV 191 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999999999888766543
No 204
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=93.50 E-value=0.31 Score=48.81 Aligned_cols=94 Identities=14% Similarity=0.123 Sum_probs=66.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH--HHHcCChhHH
Q 004943 533 HFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTL--AKKLYDIPTQ 610 (722)
Q Consensus 533 l~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~l--Akki~D~~~q 610 (722)
-+.+|......|++.||+.+|+++|.--. -+| +..+..++...++.+++..|...++.-+.. +.+.+|
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qalsG~f--A~d----~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd---- 161 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQALSGIF--AHD----AAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD---- 161 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhcccc--CCC----HHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC----
Confidence 45678888899999999999999987533 223 356778888888888888877666654432 344455
Q ss_pred HHHHHHHHHHHHHcCCchhHhHHHHHHH
Q 004943 611 IWALSVLTALYQQLGDRGNEMENDEYRR 638 (722)
Q Consensus 611 ~~al~~L~~l~~~~Gd~~~A~e~~~~~~ 638 (722)
....+++.+...|.+.+|...|+...
T Consensus 162 --~~Ll~aR~laa~g~~a~Aesafe~a~ 187 (251)
T COG4700 162 --GHLLFARTLAAQGKYADAESAFEVAI 187 (251)
T ss_pred --chHHHHHHHHhcCCchhHHHHHHHHH
Confidence 45567888888888877766665443
No 205
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=93.32 E-value=0.64 Score=49.67 Aligned_cols=97 Identities=25% Similarity=0.202 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCC---ChHHHHHHHHHHHHHHHHcCCh
Q 004943 531 SLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALH---DTVQAREILRSSLTLAKKLYDI 607 (722)
Q Consensus 531 ~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g---~~~qA~~~l~~Al~lAkki~D~ 607 (722)
.-+..+|.+|+.+|++..|..-|++|++++ |+. ..++..+|+++..+. +..++.+++++|+.+ |
T Consensus 157 egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~----g~n---~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~-----D- 223 (287)
T COG4235 157 EGWDLLGRAYMALGRASDALLAYRNALRLA----GDN---PEILLGLAEALYYQAGQQMTAKARALLRQALAL-----D- 223 (287)
T ss_pred hhHHHHHHHHHHhcchhHHHHHHHHHHHhC----CCC---HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc-----C-
Confidence 568899999999999999999999999993 342 245667777665544 778899999999864 3
Q ss_pred hHHHHHHHHHHHHHHHcCCchhHhHHHHHHHHH
Q 004943 608 PTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 640 (722)
Q Consensus 608 ~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~ 640 (722)
+....++..|+-.+...||+.+|....+.-.+.
T Consensus 224 ~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 224 PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 234889999999999999999999877665443
No 206
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=93.14 E-value=0.28 Score=40.47 Aligned_cols=59 Identities=20% Similarity=0.229 Sum_probs=49.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Q 004943 537 GLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAK 602 (722)
Q Consensus 537 G~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAk 602 (722)
..+|..++++++|..++.+++++.- .....+...|.++...|++++|...+..+++...
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p-------~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDP-------DDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCc-------ccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 4678899999999999999999932 2445778899999999999999999999996554
No 207
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=93.12 E-value=1.5 Score=49.28 Aligned_cols=88 Identities=23% Similarity=0.128 Sum_probs=71.3
Q ss_pred hHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 004943 414 KVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYA 493 (722)
Q Consensus 414 Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnl 493 (722)
++.++...++-.+|++.+.+++. ..|.. +.++...+.++...++++.|+...++|...+.+ .--++..|
T Consensus 206 LA~v~l~~~~E~~AI~ll~~aL~---~~p~d-----~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~---~f~~W~~L 274 (395)
T PF09295_consen 206 LARVYLLMNEEVEAIRLLNEALK---ENPQD-----SELLNLQAEFLLSKKKYELALEIAKKAVELSPS---EFETWYQL 274 (395)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHH---hCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch---hHHHHHHH
Confidence 46677778899999999999993 44432 577889999999999999999999988876544 34567778
Q ss_pred HHHHHhcCChhHHHHHHHH
Q 004943 494 AVSYFCIGDAESSSQAIDL 512 (722)
Q Consensus 494 a~v~l~~G~~e~a~~aL~l 512 (722)
|.+|+..|+++.+--+|+.
T Consensus 275 a~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 275 AECYIQLGDFENALLALNS 293 (395)
T ss_pred HHHHHhcCCHHHHHHHHhc
Confidence 9999999999887777764
No 208
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.11 E-value=0.22 Score=34.96 Aligned_cols=32 Identities=22% Similarity=0.174 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhc
Q 004943 450 SMIEMLRGQYAHSVGCYSEAAFHYVEAAKITE 481 (722)
Q Consensus 450 a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~ 481 (722)
+.+++.+|.++..+|++++|+..|++|+++-.
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 35789999999999999999999999998643
No 209
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=93.03 E-value=1.5 Score=54.85 Aligned_cols=185 Identities=18% Similarity=0.114 Sum_probs=135.4
Q ss_pred hHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhc-----chhHHHH
Q 004943 414 KVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITE-----SKSMQAM 488 (722)
Q Consensus 414 Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~-----~~~~~A~ 488 (722)
.|......|.|.+|.+ +.+++.++.+.=.....-.+..+..+...+..+|++++|..+...|.-+.+ +..-...
T Consensus 938 ~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~ 1016 (1236)
T KOG1839|consen 938 QGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKL 1016 (1236)
T ss_pred hhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHH
Confidence 4667778999999999 999999988643322334567788999999999999999999988764443 2336677
Q ss_pred HHHHHHHHHHhcCChhH----HHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 004943 489 CHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHM 564 (722)
Q Consensus 489 allnla~v~l~~G~~e~----a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~ 564 (722)
.+.|++........... ..+++.+..=.+.. .++. -|....+++.+.+.-++++.|.++++.|++....-.
T Consensus 1017 ~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge---~hP~--~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~ 1091 (1236)
T KOG1839|consen 1017 AYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGE---DHPP--TALSFINLELLLLGVEEADTALRYLESALAKNKKVL 1091 (1236)
T ss_pred HhhHHHHHHHhccCccchhhhHHHHHHhhccccCC---CCCc--hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhc
Confidence 88888877766554332 44444443322222 1222 567778888888888999999999999999988777
Q ss_pred CChH-HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHc
Q 004943 565 GNLQ-LVSQYLTILGNLALALHDTVQAREILRSSLTLAKKL 604 (722)
Q Consensus 565 gd~~-l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki 604 (722)
|+.. -++.....++.++-..++..-|..+.+.+..+.++.
T Consensus 1092 g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~q 1132 (1236)
T KOG1839|consen 1092 GPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYKEQ 1132 (1236)
T ss_pred CccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHh
Confidence 8543 455677778888888888888888888887777665
No 210
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.95 E-value=5.9 Score=41.99 Aligned_cols=148 Identities=18% Similarity=0.138 Sum_probs=94.6
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchh--HHHHHHHH
Q 004943 415 VAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS--MQAMCHAY 492 (722)
Q Consensus 415 g~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~--~~A~alln 492 (722)
+.+++.-|++++|++....... .++.++++ .+...+.+.+-|.........+..+-. ..|.++++
T Consensus 115 a~i~~~~~~~deAl~~~~~~~~-----------lE~~Al~V--qI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~ 181 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGEN-----------LEAAALNV--QILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVK 181 (299)
T ss_pred hHHhhcCCChHHHHHHHhccch-----------HHHHHHHH--HHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Confidence 7889999999999998766222 23333333 445567777777777654444433321 22333333
Q ss_pred HHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHH
Q 004943 493 AAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQ 572 (722)
Q Consensus 493 la~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~ 572 (722)
+ ..| -+....++-...+++...+. -...++..+.+++.+|+|++|...+++||.-- -++ ..
T Consensus 182 l-----a~g-gek~qdAfyifeE~s~k~~~------T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd---~~d----pe 242 (299)
T KOG3081|consen 182 L-----ATG-GEKIQDAFYIFEELSEKTPP------TPLLLNGQAVCHLQLGRYEEAESLLEEALDKD---AKD----PE 242 (299)
T ss_pred H-----hcc-chhhhhHHHHHHHHhcccCC------ChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc---CCC----HH
Confidence 3 223 23477777777777553321 23568888999999999999999999999872 334 35
Q ss_pred HHHHHHHHHHhCCChHHHHHHH
Q 004943 573 YLTILGNLALALHDTVQAREIL 594 (722)
Q Consensus 573 ~L~~LG~~~~a~g~~~qA~~~l 594 (722)
+|.+|=......|...++..-+
T Consensus 243 tL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 243 TLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred HHHHHHHHHHHhCCChHHHHHH
Confidence 6667766677778666555433
No 211
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.89 E-value=0.26 Score=55.50 Aligned_cols=120 Identities=18% Similarity=0.255 Sum_probs=80.9
Q ss_pred hHHHHHhhCCHHHHHHHHHHHHHHHHhCCchh-hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 004943 414 KVAVELTRSGFVEAQEALVQMKNWFIRFPTIL-QACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAY 492 (722)
Q Consensus 414 Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~-~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~alln 492 (722)
....+..+|+|..|.+.+...=--.+.-+... +...+...+++|-++..+|+|..+..+|..||+-. |
T Consensus 246 Ksq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~--------c--- 314 (696)
T KOG2471|consen 246 KSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNS--------C--- 314 (696)
T ss_pred HHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHH--------H---
Confidence 46678889999999998655433333322222 12345666999999999999999999999998611 0
Q ss_pred HHHHHHhcC-ChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 004943 493 AAVSYFCIG-DAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHN 562 (722)
Q Consensus 493 la~v~l~~G-~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~ 562 (722)
.-++.| .+ .+.++...+. ....++++|..+.+.|++-.|.++|.+|....++
T Consensus 315 ---~qL~~g~~~----------~~~~tls~nk-----s~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~ 367 (696)
T KOG2471|consen 315 ---SQLRNGLKP----------AKTFTLSQNK-----SMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR 367 (696)
T ss_pred ---HHHhccCCC----------Ccceehhccc-----chhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc
Confidence 001112 11 2344433221 3457889999999999999999999999988764
No 212
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=92.75 E-value=32 Score=42.60 Aligned_cols=192 Identities=13% Similarity=0.056 Sum_probs=121.8
Q ss_pred CHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCC
Q 004943 423 GFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGD 502 (722)
Q Consensus 423 ~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~ 502 (722)
+-..|+.++.+++.++-. -....+.+|.. -..|.+.-|...|.++.-.- +.-..++.|+|.+++...|
T Consensus 798 ~~~~Ai~c~KkaV~L~an--------n~~~WnaLGVl-sg~gnva~aQHCfIks~~se---p~~~~~W~NlgvL~l~n~d 865 (1238)
T KOG1127|consen 798 DACTAIRCCKKAVSLCAN--------NEGLWNALGVL-SGIGNVACAQHCFIKSRFSE---PTCHCQWLNLGVLVLENQD 865 (1238)
T ss_pred hHHHHHHHHHHHHHHhhc--------cHHHHHHHHHh-hccchhhhhhhhhhhhhhcc---ccchhheeccceeEEeccc
Confidence 334799999999988653 23457778888 55688888888886654321 2335667899999998888
Q ss_pred hhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 004943 503 AESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLAL 582 (722)
Q Consensus 503 ~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~ 582 (722)
.+.+.+++..++.+ .+.+ ...+...+.+....|+..++...++.+-.+... .|--... ++...-...+.
T Consensus 866 ~E~A~~af~~~qSL--dP~n-------l~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~-~gka~~f-~Yw~c~te~h~ 934 (1238)
T KOG1127|consen 866 FEHAEPAFSSVQSL--DPLN-------LVQWLGEALIPEAVGRIIERLILFAHSDELCSK-EGKAKKF-QYWLCATEIHL 934 (1238)
T ss_pred HHHhhHHHHhhhhc--Cchh-------hHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhcc-ccccchh-hHHHHHHHHHH
Confidence 88888888877665 1111 134555555566788888888888885444322 2321222 34444446677
Q ss_pred hCCChHH----HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHH
Q 004943 583 ALHDTVQ----AREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYR 637 (722)
Q Consensus 583 a~g~~~q----A~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~ 637 (722)
.+|+.++ +++....++.+-+=.+-.+.-..++...+-+...++.+.++.+.+.+.
T Consensus 935 ~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 935 QNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred hccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 7777665 344444555555544555555777777777777777666666655543
No 213
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=92.50 E-value=21 Score=39.88 Aligned_cols=170 Identities=14% Similarity=0.058 Sum_probs=111.7
Q ss_pred hHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 004943 414 KVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYA 493 (722)
Q Consensus 414 Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnl 493 (722)
.|++....||=.+|.+.-.++-.+... ..++++|.+-.+...--|+|+.|..-|+ ...+++..+-.-+..|
T Consensus 90 tGliAagAGda~lARkmt~~~~~llss------DqepLIhlLeAQaal~eG~~~~Ar~kfe---AMl~dPEtRllGLRgL 160 (531)
T COG3898 90 TGLIAAGAGDASLARKMTARASKLLSS------DQEPLIHLLEAQAALLEGDYEDARKKFE---AMLDDPETRLLGLRGL 160 (531)
T ss_pred hhhhhhccCchHHHHHHHHHHHhhhhc------cchHHHHHHHHHHHHhcCchHHHHHHHH---HHhcChHHHHHhHHHH
Confidence 699999999999999998888876554 4578999999999999999999999996 3456666666555554
Q ss_pred HHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC---hHHH
Q 004943 494 AVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGN---LQLV 570 (722)
Q Consensus 494 a~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd---~~l~ 570 (722)
=+--.+.|+++.+.+--+..-..... ... -+ .-.++ .....|+.+.|.+++...... + .++. .+.-
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~Ap~----l~W--A~--~AtLe-~r~~~gdWd~AlkLvd~~~~~-~-vie~~~aeR~r 229 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKAPQ----LPW--AA--RATLE-ARCAAGDWDGALKLVDAQRAA-K-VIEKDVAERSR 229 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhccC----Cch--HH--HHHHH-HHHhcCChHHHHHHHHHHHHH-H-hhchhhHHHHH
Confidence 44445778877644333332222110 111 22 22232 335789999999999988776 3 2332 1222
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHc
Q 004943 571 SQYLTILGNLALALHDTVQAREILRSSLTLAKKL 604 (722)
Q Consensus 571 a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki 604 (722)
+-.|+.- -...-.-|+.+|++...+|+.++..+
T Consensus 230 AvLLtAk-A~s~ldadp~~Ar~~A~~a~KL~pdl 262 (531)
T COG3898 230 AVLLTAK-AMSLLDADPASARDDALEANKLAPDL 262 (531)
T ss_pred HHHHHHH-HHHHhcCChHHHHHHHHHHhhcCCcc
Confidence 3233322 23344457889998888887766544
No 214
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.33 E-value=0.33 Score=33.78 Aligned_cols=32 Identities=22% Similarity=0.182 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhc
Q 004943 450 SMIEMLRGQYAHSVGCYSEAAFHYVEAAKITE 481 (722)
Q Consensus 450 a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~ 481 (722)
+.+++.+|.++...|++++|..+|++++.+..
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 35688999999999999999999999987654
No 215
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=92.18 E-value=3.6 Score=51.96 Aligned_cols=187 Identities=16% Similarity=0.075 Sum_probs=109.7
Q ss_pred HhhccCCChHHHHHHHHHHHHHHH--HHHHhcCCC---------CCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHh
Q 004943 352 ILGRPKGLFKECMQRIQSGMQTIQ--DALLKLGIT---------DGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELT 420 (722)
Q Consensus 352 ~~~~~kg~~~kA~k~~~~AL~~i~--~~~~~lg~~---------~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~ 420 (722)
.|....+..++|++..++||..|+ +.-+++... .| ++..+. ...=++.-||- -..++..|.-+|..
T Consensus 1466 af~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG-~eesl~-kVFeRAcqycd-~~~V~~~L~~iy~k 1542 (1710)
T KOG1070|consen 1466 AFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYG-TEESLK-KVFERACQYCD-AYTVHLKLLGIYEK 1542 (1710)
T ss_pred HHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhC-cHHHHH-HHHHHHHHhcc-hHHHHHHHHHHHHH
Confidence 455667899999999999999972 112222210 01 111110 11112233433 22333455666667
Q ss_pred hCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhc
Q 004943 421 RSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCI 500 (722)
Q Consensus 421 ~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~ 500 (722)
-..+++|.+.+++++.-|++- .-++..-|........-++|-.....||.-........+. --.|++-...
T Consensus 1543 ~ek~~~A~ell~~m~KKF~q~--------~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~I-skfAqLEFk~ 1613 (1710)
T KOG1070|consen 1543 SEKNDEADELLRLMLKKFGQT--------RKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFI-SKFAQLEFKY 1613 (1710)
T ss_pred hhcchhHHHHHHHHHHHhcch--------hhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHH-HHHHHHHhhc
Confidence 777777777777777766532 2345566677777777777777777777655443222111 2224555555
Q ss_pred CChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 004943 501 GDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQI 559 (722)
Q Consensus 501 G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~l 559 (722)
||++..+.+++-.... .+ - +...|.++...-...|+..-++..|++++.+
T Consensus 1614 GDaeRGRtlfEgll~a---yP----K--RtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSA---YP----K--RTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred CCchhhHHHHHHHHhh---Cc----c--chhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 7777655555533222 11 1 4456777777778888888888888888877
No 216
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=92.11 E-value=0.32 Score=34.00 Aligned_cols=31 Identities=23% Similarity=0.394 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 004943 530 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 560 (722)
Q Consensus 530 A~al~~lG~~~~~~G~~~eAk~~L~qAL~la 560 (722)
|.+++.+|.++...|++++|..+|++++++.
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4578999999999999999999999999984
No 217
>PLN02789 farnesyltranstransferase
Probab=91.98 E-value=7.4 Score=42.57 Aligned_cols=174 Identities=7% Similarity=-0.020 Sum_probs=107.1
Q ss_pred HhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 004943 419 LTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVG-CYSEAAFHYVEAAKITESKSMQAMCHAYAAVSY 497 (722)
Q Consensus 419 l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG-~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~ 497 (722)
...+++.+|+..+.+++.+ .|+- ..+.+.+|.+...+| .+++|+..+.+++...... ..++.+.+.+.
T Consensus 48 ~~~e~serAL~lt~~aI~l---nP~~-----ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkn---yqaW~~R~~~l 116 (320)
T PLN02789 48 ASDERSPRALDLTADVIRL---NPGN-----YTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKN---YQIWHHRRWLA 116 (320)
T ss_pred HcCCCCHHHHHHHHHHHHH---Cchh-----HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcc---hHHhHHHHHHH
Confidence 4456888999999988876 3432 356888899999999 6899999998887654332 23466667676
Q ss_pred HhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 004943 498 FCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTIL 577 (722)
Q Consensus 498 l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~L 577 (722)
...|+.. ..+.++..........+ -.+++...|.+....|++++|..++.++|+.- ..| ..+.+..
T Consensus 117 ~~l~~~~-~~~el~~~~kal~~dpk------Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d---~~N----~sAW~~R 182 (320)
T PLN02789 117 EKLGPDA-ANKELEFTRKILSLDAK------NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED---VRN----NSAWNQR 182 (320)
T ss_pred HHcCchh-hHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC---CCc----hhHHHHH
Confidence 6666531 12223333222121111 12578888888889999999999999999982 333 2355555
Q ss_pred HHHHHhC---CCh----HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH
Q 004943 578 GNLALAL---HDT----VQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQ 623 (722)
Q Consensus 578 G~~~~a~---g~~----~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~ 623 (722)
|.+.... |.. +++.++...++.+.-.-.. +| ..++-++..
T Consensus 183 ~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~S----aW--~Yl~~ll~~ 229 (320)
T PLN02789 183 YFVITRSPLLGGLEAMRDSELKYTIDAILANPRNES----PW--RYLRGLFKD 229 (320)
T ss_pred HHHHHhccccccccccHHHHHHHHHHHHHhCCCCcC----HH--HHHHHHHhc
Confidence 5555444 222 3455666666554322222 34 445555555
No 218
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=91.90 E-value=0.23 Score=40.35 Aligned_cols=54 Identities=28% Similarity=0.294 Sum_probs=43.2
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Q 004943 541 MRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLA 601 (722)
Q Consensus 541 ~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lA 601 (722)
+.+|++.+|...|+++++..- +| ..+...||.++...|++++|+..+...+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p---~~----~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNP---DN----PEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTT---TS----HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHHCC---CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 468999999999999998821 12 3467789999999999999999988876543
No 219
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.82 E-value=6.5 Score=39.19 Aligned_cols=110 Identities=17% Similarity=0.123 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 004943 485 MQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHM 564 (722)
Q Consensus 485 ~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~ 564 (722)
-.-.++..+|.-|...||.+.+.+++..+++-|.+.++ +...++.+-.+....|++..+..++.+|-.+.. ..
T Consensus 34 sir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~------~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~-~~ 106 (177)
T PF10602_consen 34 SIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGH------KIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIE-KG 106 (177)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHH------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh-cc
Confidence 44467788899999999999999999988887665542 556677777888899999999999999999964 46
Q ss_pred CChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Q 004943 565 GNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLA 601 (722)
Q Consensus 565 gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lA 601 (722)
||.-.....-..-|-.++..+++.+|-..+-.+....
T Consensus 107 ~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 107 GDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred chHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 6654544555566667777899999999888877655
No 220
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.52 E-value=1.2 Score=47.54 Aligned_cols=101 Identities=11% Similarity=0.082 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHH-HHHhcchhccccc-------
Q 004943 451 MIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQA-IDLIGPVYQMKDT------- 522 (722)
Q Consensus 451 ~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~a-L~l~~~l~r~~~~------- 522 (722)
-..++.|-+....|+|++|+.-|+.|+...+-.++.| .|+|.+|.+.|+++++-.. -+++..-.+.|+.
T Consensus 145 d~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllA---YniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~t 221 (459)
T KOG4340|consen 145 DGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLA---YNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTT 221 (459)
T ss_pred chhccchheeeccccHHHHHHHHHHHHhhcCCCchhH---HHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCcccee
Confidence 3344555555555556666666655555444333333 3455555555555442211 1222221222211
Q ss_pred ----------ccChH--HHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004943 523 ----------INGVR--EEASLHFAYGLLLMRQQDFQEARNRLA 554 (722)
Q Consensus 523 ----------~~~~~--~~A~al~~lG~~~~~~G~~~eAk~~L~ 554 (722)
...++ +...+++..+.++++.|++..|++.|.
T Consensus 222 egiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 222 EGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred ccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence 11010 124577777888888899988887664
No 221
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=91.38 E-value=3.5 Score=38.96 Aligned_cols=105 Identities=24% Similarity=0.186 Sum_probs=71.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhcCC-----hH----------HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Q 004943 537 GLLLMRQQDFQEARNRLAKGLQIAHNHMGN-----LQ----------LVSQYLTILGNLALALHDTVQAREILRSSLTLA 601 (722)
Q Consensus 537 G~~~~~~G~~~eAk~~L~qAL~la~~~~gd-----~~----------l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lA 601 (722)
|......|++.++...+++++.+.+..... .+ .-..++..++..+...|++++|...++.++.+
T Consensus 13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~- 91 (146)
T PF03704_consen 13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALAL- 91 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc-
Confidence 444456778888888888888876432211 11 12246677888899999999999999988875
Q ss_pred HHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHHHHHH-HhHH
Q 004943 602 KKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDE-LQKR 647 (722)
Q Consensus 602 kki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~-l~~~ 647 (722)
||. .-.+...|-++|...|++..|.+.|+...+...+ ++..
T Consensus 92 ----dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~ 133 (146)
T PF03704_consen 92 ----DPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIE 133 (146)
T ss_dssp ----STT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS--
T ss_pred ----CCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcC
Confidence 333 3556677778999999999999999999777764 4443
No 222
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.11 E-value=0.53 Score=32.84 Aligned_cols=31 Identities=19% Similarity=0.178 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhc
Q 004943 451 MIEMLRGQYAHSVGCYSEAAFHYVEAAKITE 481 (722)
Q Consensus 451 ~i~~llG~~~~alG~~~~Al~~f~~AL~l~~ 481 (722)
.+++.+|.++..+|++++|...|++++++..
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5789999999999999999999999987654
No 223
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.09 E-value=7.7 Score=40.07 Aligned_cols=184 Identities=16% Similarity=0.140 Sum_probs=104.6
Q ss_pred HhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHH
Q 004943 412 ENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHA 491 (722)
Q Consensus 412 e~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~all 491 (722)
+.+|.-....|+|+.|.+.+...+++- |. --.++.++|.-....|+|.-|..-|.+--..-.+.+-+++
T Consensus 103 NyLG~Yl~~a~~fdaa~eaFds~~ELD---p~-----y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~L--- 171 (297)
T COG4785 103 NYLGIYLTQAGNFDAAYEAFDSVLELD---PT-----YNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSL--- 171 (297)
T ss_pred HHHHHHHHhcccchHHHHHhhhHhccC---Cc-----chHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHH---
Confidence 558988999999999999988887752 22 2356778888888999999999988543322222222221
Q ss_pred HHHHHHHhcCC--hhHHHHHH-HHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChH
Q 004943 492 YAAVSYFCIGD--AESSSQAI-DLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQ 568 (722)
Q Consensus 492 nla~v~l~~G~--~e~a~~aL-~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~ 568 (722)
++|+...+ |..+...| ++.... + .+-+|--.+-+-+| ...+ +..+.++-.-+++...=..
T Consensus 172 ---WLYl~E~k~dP~~A~tnL~qR~~~~----d--~e~WG~~iV~~yLg-------kiS~-e~l~~~~~a~a~~n~~~Ae 234 (297)
T COG4785 172 ---WLYLNEQKLDPKQAKTNLKQRAEKS----D--KEQWGWNIVEFYLG-------KISE-ETLMERLKADATDNTSLAE 234 (297)
T ss_pred ---HHHHHHhhCCHHHHHHHHHHHHHhc----c--HhhhhHHHHHHHHh-------hccH-HHHHHHHHhhccchHHHHH
Confidence 34444344 33344333 232221 1 11111112222233 3221 3333333333221000012
Q ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcC
Q 004943 569 LVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLG 625 (722)
Q Consensus 569 l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~G 625 (722)
....+..-||.-++..|+..+|...++=| +|....+-..--.++..|+.++-...
T Consensus 235 ~LTEtyFYL~K~~l~~G~~~~A~~LfKLa--iannVynfVE~RyA~~EL~~l~q~~~ 289 (297)
T COG4785 235 HLTETYFYLGKYYLSLGDLDEATALFKLA--VANNVYNFVEHRYALLELSLLGQDQD 289 (297)
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHhccccc
Confidence 23356667999999999999999998854 56666655555566777777665543
No 224
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=90.93 E-value=3.9 Score=44.56 Aligned_cols=189 Identities=18% Similarity=0.096 Sum_probs=126.9
Q ss_pred HhCCHHHHHHHHHHHHHhhc---ch----hHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccc-----------
Q 004943 462 SVGCYSEAAFHYVEAAKITE---SK----SMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTI----------- 523 (722)
Q Consensus 462 alG~~~~Al~~f~~AL~l~~---~~----~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~----------- 523 (722)
...+++++...|..-+.... +. .-...+.++++..|...|+.++.+..+...+|++..-+..
T Consensus 16 ~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~KakaaKlvR~Lvd 95 (411)
T KOG1463|consen 16 SVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAAKLVRSLVD 95 (411)
T ss_pred ccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34455666666655544211 11 1345667888888888888776555555554443322111
Q ss_pred --------cChH-------------H-----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 004943 524 --------NGVR-------------E-----EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTIL 577 (722)
Q Consensus 524 --------~~~~-------------~-----~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~L 577 (722)
.+.. + +-..--.+..+|...++|.+|......-++--+ ..-|..+...+...=
T Consensus 96 ~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElK-KlDDK~lLvev~llE 174 (411)
T KOG1463|consen 96 MFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELK-KLDDKILLVEVHLLE 174 (411)
T ss_pred HHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-hcccccceeeehhhh
Confidence 0000 0 001112355677788999999999888888766 477878878888888
Q ss_pred HHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH-HHHHcCCchhHhHHHHHHHHHHHHHhHHHHHh
Q 004943 578 GNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTA-LYQQLGDRGNEMENDEYRRKKLDELQKRLADA 651 (722)
Q Consensus 578 G~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~-l~~~~Gd~~~A~e~~~~~~~~~~~l~~~~~~a 651 (722)
+.+|++..+...|...+.+|.+.|..+.-||...-++..... +|.+..|+.-|..+|=.+-.-++++..++-.+
T Consensus 175 SK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~ 249 (411)
T KOG1463|consen 175 SKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKAL 249 (411)
T ss_pred hHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcHHHH
Confidence 999999999999999999999999999998886666655554 45555688888888877777777777664433
No 225
>PRK11906 transcriptional regulator; Provisional
Probab=90.68 E-value=4.2 Score=46.24 Aligned_cols=152 Identities=14% Similarity=0.011 Sum_probs=91.5
Q ss_pred CHHHHHHHHHHHHHHHHhCCchhhh--hHHHHHHHH---HHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 004943 423 GFVEAQEALVQMKNWFIRFPTILQA--CESMIEMLR---GQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSY 497 (722)
Q Consensus 423 ~~~eA~~~l~~Al~l~~~~~d~~~~--~~a~i~~ll---G~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~ 497 (722)
....|+..+.+|+....-.|+.... ..+.+|... |... ......+|.++-..|+.+-. .-++|+..+|.+.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~-~~~~~~~a~~~A~rAveld~---~Da~a~~~~g~~~ 348 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSE-LELAAQKALELLDYVSDITT---VDGKILAIMGLIT 348 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHhcCC---CCHHHHHHHHHHH
Confidence 4456777777777544445653222 222222222 1111 22344566666665655433 3366777778877
Q ss_pred HhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 004943 498 FCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTIL 577 (722)
Q Consensus 498 l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~L 577 (722)
...|+++.+...++++..+.- .-|.+++..|.++...|+.++|.+++++|+++. ..+.-+-++-.-
T Consensus 349 ~~~~~~~~a~~~f~rA~~L~P---------n~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs-----P~~~~~~~~~~~ 414 (458)
T PRK11906 349 GLSGQAKVSHILFEQAKIHST---------DIASLYYYRALVHFHNEKIEEARICIDKSLQLE-----PRRRKAVVIKEC 414 (458)
T ss_pred HhhcchhhHHHHHHHHhhcCC---------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-----chhhHHHHHHHH
Confidence 777887777777777666511 156788889999999999999999999998872 334444444443
Q ss_pred HHHHHhCCChHHHHHH
Q 004943 578 GNLALALHDTVQAREI 593 (722)
Q Consensus 578 G~~~~a~g~~~qA~~~ 593 (722)
=.+|... ..+.|.+.
T Consensus 415 ~~~~~~~-~~~~~~~~ 429 (458)
T PRK11906 415 VDMYVPN-PLKNNIKL 429 (458)
T ss_pred HHHHcCC-chhhhHHH
Confidence 3356553 34444443
No 226
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=90.49 E-value=24 Score=41.73 Aligned_cols=215 Identities=10% Similarity=0.110 Sum_probs=123.6
Q ss_pred HhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhC-------------CHHHHHHHHHHHHH
Q 004943 412 ENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVG-------------CYSEAAFHYVEAAK 478 (722)
Q Consensus 412 e~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG-------------~~~~Al~~f~~AL~ 478 (722)
..|+--|.+.|+++.|...|++++.-.-...|..+..-+.+..---.+...++ +.+-.++.|+.-+.
T Consensus 252 ~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~ 331 (835)
T KOG2047|consen 252 CSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMN 331 (835)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHh
Confidence 34788999999999999999999986655555332222233222222222222 23334444433221
Q ss_pred hhcchhHHHHHH----HH----HHHHHHhcCChhH----HHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCH
Q 004943 479 ITESKSMQAMCH----AY----AAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDF 546 (722)
Q Consensus 479 l~~~~~~~A~al----ln----la~v~l~~G~~e~----a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~ 546 (722)
.-. .-.-..++ +| .-.|-+..|++.+ +.+|...+.|. ...|+.+ -.+-.+|..|...|+.
T Consensus 332 rr~-~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~-ka~Gs~~------~Lw~~faklYe~~~~l 403 (835)
T KOG2047|consen 332 RRP-LLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPK-KAVGSPG------TLWVEFAKLYENNGDL 403 (835)
T ss_pred ccc-hHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcc-cCCCChh------hHHHHHHHHHHhcCcH
Confidence 100 00000000 00 1112233345443 66677666665 2233333 2466689999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHc------CChhHHHHHHHHHHHH
Q 004943 547 QEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKL------YDIPTQIWALSVLTAL 620 (722)
Q Consensus 547 ~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki------~D~~~q~~al~~L~~l 620 (722)
+.|+-.+.+|++.- .+--...+.+...=|+.-+...+.+.|.+..+.|..+=++- +..+.|...+..| ++
T Consensus 404 ~~aRvifeka~~V~---y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSl-ki 479 (835)
T KOG2047|consen 404 DDARVIFEKATKVP---YKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSL-KI 479 (835)
T ss_pred HHHHHHHHHhhcCC---ccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhH-HH
Confidence 99999999999883 33334456777788888888889999999999998765541 3445666665543 22
Q ss_pred HHHcCCchhHhHHHHHHH
Q 004943 621 YQQLGDRGNEMENDEYRR 638 (722)
Q Consensus 621 ~~~~Gd~~~A~e~~~~~~ 638 (722)
...--|.+++..-++--+
T Consensus 480 Ws~y~DleEs~gtfestk 497 (835)
T KOG2047|consen 480 WSMYADLEESLGTFESTK 497 (835)
T ss_pred HHHHHHHHHHhccHHHHH
Confidence 223334444444343333
No 227
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=90.41 E-value=32 Score=41.15 Aligned_cols=114 Identities=15% Similarity=0.043 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHH-------------HHHHHHHhCCChHHHHHHHHH
Q 004943 530 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLT-------------ILGNLALALHDTVQAREILRS 596 (722)
Q Consensus 530 A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~-------------~LG~~~~a~g~~~qA~~~l~~ 596 (722)
..+-++.|.+|-+.|+.=|-..-+.+||+-.+ -||..+.|.-|- .-|.-.-..|.++.|.+++-+
T Consensus 654 ia~alik~elydkagdlfeki~d~dkale~fk--kgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfie 731 (1636)
T KOG3616|consen 654 IAAALIKGELYDKAGDLFEKIHDFDKALECFK--KGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIE 731 (1636)
T ss_pred HHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHH--cccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHH
Confidence 34445556666665554444444444444432 344444333222 223333444556666655554
Q ss_pred HHH-------------------HHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHHHHHHHh
Q 004943 597 SLT-------------------LAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDELQ 645 (722)
Q Consensus 597 Al~-------------------lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~l~ 645 (722)
|-. +-..+.|..+...-+-..++-|...||++.|.+.|.....+.|.+.
T Consensus 732 a~~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~ 799 (1636)
T KOG3616|consen 732 ANCLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLFKDAID 799 (1636)
T ss_pred hhhHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchhHHHHH
Confidence 443 3333455444333445677889999999999998887776666543
No 228
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=90.37 E-value=2.8 Score=47.09 Aligned_cols=87 Identities=21% Similarity=0.190 Sum_probs=70.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHH
Q 004943 533 HFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIW 612 (722)
Q Consensus 533 l~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~ 612 (722)
...++.++...++..+|.+.+.++|+... + .+..|..-+..++..++++.|.+.++.|..++ ++ .-.
T Consensus 203 ~~~LA~v~l~~~~E~~AI~ll~~aL~~~p----~---d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~ls---P~---~f~ 269 (395)
T PF09295_consen 203 AVLLARVYLLMNEEVEAIRLLNEALKENP----Q---DSELLNLQAEFLLSKKKYELALEIAKKAVELS---PS---EFE 269 (395)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHhCC----C---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---ch---hHH
Confidence 34577888888999999999999995521 1 17788899999999999999999999998876 33 344
Q ss_pred HHHHHHHHHHHcCCchhHhH
Q 004943 613 ALSVLTALYQQLGDRGNEME 632 (722)
Q Consensus 613 al~~L~~l~~~~Gd~~~A~e 632 (722)
+-..|+++|...|++++|+-
T Consensus 270 ~W~~La~~Yi~~~d~e~ALl 289 (395)
T PF09295_consen 270 TWYQLAECYIQLGDFENALL 289 (395)
T ss_pred HHHHHHHHHHhcCCHHHHHH
Confidence 55669999999999999975
No 229
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=90.21 E-value=27 Score=36.85 Aligned_cols=175 Identities=16% Similarity=0.079 Sum_probs=121.9
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChH
Q 004943 448 CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVR 527 (722)
Q Consensus 448 ~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~ 527 (722)
..+.-+|..|.-...-|++++|...|....+...-....-.+.+.++..+..-|+++.+....+.....+-.+.+
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n----- 106 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN----- 106 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-----
Confidence 356779999999999999999999997555444333344677788899999989998888888887776554432
Q ss_pred HHHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHHHHHhcCChHHHH--------------HHHHHHHHHHHhCCChH
Q 004943 528 EEASLHFAYGLLLMR-----QQDFQEARNRLAKGLQIAHNHMGNLQLVS--------------QYLTILGNLALALHDTV 588 (722)
Q Consensus 528 ~~A~al~~lG~~~~~-----~G~~~eAk~~L~qAL~la~~~~gd~~l~a--------------~~L~~LG~~~~a~g~~~ 588 (722)
..++++-.|..++. ..+...+++-+..-=+... .--|.+-+. .-=...|..|+..|.+.
T Consensus 107 -~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~-ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~ 184 (254)
T COG4105 107 -ADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQ-RYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYV 184 (254)
T ss_pred -hhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHH-HCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChH
Confidence 45677777777764 2334445544444333322 233333222 22335678899999999
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhH
Q 004943 589 QAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEME 632 (722)
Q Consensus 589 qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e 632 (722)
.|..-++.-+.--..... .--++..|.++|...|-.+.|..
T Consensus 185 AA~nR~~~v~e~y~~t~~---~~eaL~~l~eaY~~lgl~~~a~~ 225 (254)
T COG4105 185 AAINRFEEVLENYPDTSA---VREALARLEEAYYALGLTDEAKK 225 (254)
T ss_pred HHHHHHHHHHhccccccc---hHHHHHHHHHHHHHhCChHHHHH
Confidence 998888887776544444 46689999999999998877764
No 230
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=89.66 E-value=4 Score=39.35 Aligned_cols=103 Identities=15% Similarity=0.162 Sum_probs=78.5
Q ss_pred HhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHH
Q 004943 412 ENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHA 491 (722)
Q Consensus 412 e~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~all 491 (722)
.+-|.-.+..|+|.+|++.++.... ++|-. .....+...+|..+...|+|++|.+.++.=+++.........++.
T Consensus 14 y~~a~~~l~~~~Y~~A~~~le~L~~---ryP~g--~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 14 YQEAQEALQKGNYEEAIKQLEALDT---RYPFG--EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHh---cCCCC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 4568889999999999888776544 56653 335688899999999999999999999998988877777888888
Q ss_pred HHHHHHHhcCC------------hhHHHHHHHHhcchhcc
Q 004943 492 YAAVSYFCIGD------------AESSSQAIDLIGPVYQM 519 (722)
Q Consensus 492 nla~v~l~~G~------------~e~a~~aL~l~~~l~r~ 519 (722)
..|+++..+.+ +....+|+..+..+.+.
T Consensus 89 ~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 89 MRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred HHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 88888877542 22256666555555443
No 231
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=89.60 E-value=45 Score=38.45 Aligned_cols=279 Identities=15% Similarity=0.068 Sum_probs=158.5
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCC--CcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHh
Q 004943 343 YALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITD--GVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELT 420 (722)
Q Consensus 343 ~aLvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~--g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~ 420 (722)
++++.||-++..+-...+++|.+.+.++...+++..++.+... ........+ ...++.+ |+-+++++ .|.+...
T Consensus 33 ~~~i~fl~A~ltfe~~~~~~A~~~l~~a~~~~~~~~k~~~~~~~~~~~~~~~~~-~~~~~el-~~AE~~L~--~Ail~~~ 108 (468)
T PF10300_consen 33 YGVIAFLKAMLTFEPEDIEEALEALKEAESLANKFRKKASKVSKKSNISNSIYP-EELHAEL-CYAEALLL--KAILTFL 108 (468)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHhhccccccccccccccch-hHHHHHH-HHHHHHHH--HHHHHHc
Confidence 6677788888888888999999999999999887544443222 000111111 1111222 22233332 3444445
Q ss_pred hCCHH----------HHHHHHHHHHHHHHhCC-----------------------chhhhhHHHHHHHHHHHHH------
Q 004943 421 RSGFV----------EAQEALVQMKNWFIRFP-----------------------TILQACESMIEMLRGQYAH------ 461 (722)
Q Consensus 421 ~g~~~----------eA~~~l~~Al~l~~~~~-----------------------d~~~~~~a~i~~llG~~~~------ 461 (722)
.+++. .|-..|+.+.+...... ..-....+-+..-.|.+..
T Consensus 109 ~es~~~~iKg~~~lRkay~~y~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~sgv~~G~G~f~L~lSlLP 188 (468)
T PF10300_consen 109 SESLVSFIKGGYKLRKAYKIYKECMKIIEKLKKKAKSSSPGEPDSHDSWDDDSTKPIDEFFESGVYFGFGLFNLVLSLLP 188 (468)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccccccccccccchhHHHHHHhHHHHHHHHHHHHHhCC
Confidence 55543 33344444444443211 0111122223333333222
Q ss_pred -----------HhCCHHHHHHHHHHHHHhhcchh---HHHHHHHHHHHHHHh-c--CC--hhHHHHHHHHhcchhccccc
Q 004943 462 -----------SVGCYSEAAFHYVEAAKITESKS---MQAMCHAYAAVSYFC-I--GD--AESSSQAIDLIGPVYQMKDT 522 (722)
Q Consensus 462 -----------alG~~~~Al~~f~~AL~l~~~~~---~~A~allnla~v~l~-~--G~--~e~a~~aL~l~~~l~r~~~~ 522 (722)
..|+=+.++.....+.+..+-++ ..++...+..+.... . ++ .+.+.+.|+.....|-.
T Consensus 189 p~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~--- 265 (468)
T PF10300_consen 189 PKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPN--- 265 (468)
T ss_pred HHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCC---
Confidence 22555667776666554111111 223333343433322 1 11 12266666555443221
Q ss_pred ccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Q 004943 523 INGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAK 602 (722)
Q Consensus 523 ~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAk 602 (722)
=+-.++.-|.++..+|++++|...+++|+... ..-+++....+..+|+.+.-++++++|.+.+..=....
T Consensus 266 ------s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q---~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s- 335 (468)
T PF10300_consen 266 ------SALFLFFEGRLERLKGNLEEAIESFERAIESQ---SEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES- 335 (468)
T ss_pred ------cHHHHHHHHHHHHHhcCHHHHHHHHHHhccch---hhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-
Confidence 12467778999999999999999999999652 22457888899999999999999999988877655532
Q ss_pred HcCChhHHHHHHHHHHHHHHHcCCc-------hhHhHHHHHHHHHHH
Q 004943 603 KLYDIPTQIWALSVLTALYQQLGDR-------GNEMENDEYRRKKLD 642 (722)
Q Consensus 603 ki~D~~~q~~al~~L~~l~~~~Gd~-------~~A~e~~~~~~~~~~ 642 (722)
.+....-....+-++...|+. ++|.+.+........
T Consensus 336 ----~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 336 ----KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred ----ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 234556667778888999988 566655555544443
No 232
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=89.43 E-value=6.3 Score=37.16 Aligned_cols=110 Identities=15% Similarity=0.008 Sum_probs=69.9
Q ss_pred ccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHHHHHHHH
Q 004943 355 RPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQM 434 (722)
Q Consensus 355 ~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~~l~~A 434 (722)
...|....+...+++++.+ ++ |+.- +......+..+.+.-+-.....++..++..+...|++++|++.+.++
T Consensus 17 ~~~~~~~~~~~~~~~al~l----y~--G~~l--~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 88 (146)
T PF03704_consen 17 ARAGDPEEAIELLEEALAL----YR--GDFL--PDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRA 88 (146)
T ss_dssp HHTT-HHHHHHHHHHHHTT--------SSTT--GGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH----hC--CCCC--CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 4456778888888888888 43 2211 11111123333333333344666778899999999999999998888
Q ss_pred HHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh
Q 004943 435 KNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKIT 480 (722)
Q Consensus 435 l~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~ 480 (722)
+.+ .|.. -.++..+-..+...|++.+|+.+|+...+..
T Consensus 89 l~~---dP~~-----E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l 126 (146)
T PF03704_consen 89 LAL---DPYD-----EEAYRLLMRALAAQGRRAEALRVYERYRRRL 126 (146)
T ss_dssp HHH---STT------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred Hhc---CCCC-----HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 774 3332 2446666677899999999999998766544
No 233
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=89.34 E-value=4.9 Score=50.53 Aligned_cols=204 Identities=17% Similarity=0.075 Sum_probs=140.8
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchh-----HHHHHHHHHHHHHHhcCChhH-HHHHHHHhcchhccccc
Q 004943 449 ESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS-----MQAMCHAYAAVSYFCIGDAES-SSQAIDLIGPVYQMKDT 522 (722)
Q Consensus 449 ~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~-----~~A~allnla~v~l~~G~~e~-a~~aL~l~~~l~r~~~~ 522 (722)
.+.--.-.|.-....|.+.+|.+ --+++...++.. ..+-|+..++.+|.+.||+++ .......+-.-.|..+.
T Consensus 931 ~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ 1009 (1236)
T KOG1839|consen 931 EAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGK 1009 (1236)
T ss_pred hhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccC
Confidence 44455667777778888888888 666666666543 446778888999999999865 22221111111111121
Q ss_pred ccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Q 004943 523 INGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGN-LQLVSQYLTILGNLALALHDTVQAREILRSSLTLA 601 (722)
Q Consensus 523 ~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd-~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lA 601 (722)
.. .+....+-+++...+..+....|...+.+|+.+-.=-.|. +.-++.+-+.++.+++..++++.|.+.+..|+...
T Consensus 1010 ds--~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1010 DS--PNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred CC--HHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 12 1356677788888888889999999999999884323333 77788888999999999999999999999999999
Q ss_pred HHcCC--hhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHHHH-HHHhHHHHHhhhch
Q 004943 602 KKLYD--IPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKL-DELQKRLADAYSSI 655 (722)
Q Consensus 602 kki~D--~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~-~~l~~~~~~a~~~~ 655 (722)
+++.- ...-.-+...+++++...|+...|.++......+. ..+..++.+...|-
T Consensus 1088 ~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~qlg~~hsrt~~S~ 1144 (1236)
T KOG1839|consen 1088 KKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYKEQLGPDHSRTKESS 1144 (1236)
T ss_pred hhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhCCCcccchhhH
Confidence 88833 22234566788999999999999887766555443 33555555444433
No 234
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=89.23 E-value=4.6 Score=46.17 Aligned_cols=109 Identities=10% Similarity=0.043 Sum_probs=73.4
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHH---HHHHHHHHHHHHHhhHHHHHhhCCHHHHHHHHHH
Q 004943 357 KGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWM---AGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQ 433 (722)
Q Consensus 357 kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~---~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~~l~~ 433 (722)
.....++++++++|++..+..+++...... .-.....|. .+++-|++. .+++|.+..|+.+||++.+++
T Consensus 213 A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~----~g~~~e~~~~Rdt~~~~y~Kr----RLAmCarklGr~~EAIk~~rd 284 (539)
T PF04184_consen 213 ASTIVEAEELLRQAVKAGEASLGKSQFLQH----HGHFWEAWHRRDTNVLVYAKR----RLAMCARKLGRLREAIKMFRD 284 (539)
T ss_pred ccCHHHHHHHHHHHHHHHHHhhchhhhhhc----ccchhhhhhccccchhhhhHH----HHHHHHHHhCChHHHHHHHHH
Confidence 455689999999999997776655432111 000011121 234444444 479999999999999999888
Q ss_pred HHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcch
Q 004943 434 MKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK 483 (722)
Q Consensus 434 Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~ 483 (722)
.+..+ |.. ..-.+++++-..+..++.|.++.+.. ....|.
T Consensus 285 Llke~---p~~---~~l~IrenLie~LLelq~Yad~q~lL----~kYdDi 324 (539)
T PF04184_consen 285 LLKEF---PNL---DNLNIRENLIEALLELQAYADVQALL----AKYDDI 324 (539)
T ss_pred HHhhC---Ccc---chhhHHHHHHHHHHhcCCHHHHHHHH----HHhccc
Confidence 77654 421 12357888888889999999999888 445543
No 235
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=88.77 E-value=46 Score=37.44 Aligned_cols=137 Identities=12% Similarity=0.051 Sum_probs=94.5
Q ss_pred HhhCCHHHHHHHHHHHHH-HHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh--c-chhHHHHHHHHHH
Q 004943 419 LTRSGFVEAQEALVQMKN-WFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKIT--E-SKSMQAMCHAYAA 494 (722)
Q Consensus 419 l~~g~~~eA~~~l~~Al~-l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~--~-~~~~~A~allnla 494 (722)
+-+-++.+|.+.-...+. ++-..-..+....+.+++-.-..+...|+...=...+..-++.+ + +..+.+...+.+=
T Consensus 137 ~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LL 216 (493)
T KOG2581|consen 137 IDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLL 216 (493)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHH
Confidence 446678888877666554 33333334555678888888888899999776666665545443 3 4458888777777
Q ss_pred HHHHhcCChhHHHHHHHHhc-chhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 004943 495 VSYFCIGDAESSSQAIDLIG-PVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAH 561 (722)
Q Consensus 495 ~v~l~~G~~e~a~~aL~l~~-~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~ 561 (722)
..|++-+-++++........ |. . ...++.|-+++-+|.+-.-+++|..|..++.+|+..|-
T Consensus 217 r~yL~n~lydqa~~lvsK~~~pe---~---~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkap 278 (493)
T KOG2581|consen 217 RNYLHNKLYDQADKLVSKSVYPE---A---ASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAP 278 (493)
T ss_pred HHHhhhHHHHHHHHHhhcccCcc---c---cccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCc
Confidence 77877555555554443221 21 1 12235899999999999999999999999999999875
No 236
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.75 E-value=10 Score=37.89 Aligned_cols=136 Identities=15% Similarity=0.045 Sum_probs=94.6
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHhCC-c------------hhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhc
Q 004943 415 VAVELTRSGFVEAQEALVQMKNWFIRFP-T------------ILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITE 481 (722)
Q Consensus 415 g~~~l~~g~~~eA~~~l~~Al~l~~~~~-d------------~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~ 481 (722)
|.-|+..++-+.+-+.|..++.+..+.. | -....-.+..+..|.+...-|+-.+|...|.+.-+-+.
T Consensus 46 gy~yw~~s~as~sgd~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~ 125 (221)
T COG4649 46 GYTYWQTSRASKSGDAFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS 125 (221)
T ss_pred eeehhcccccccchHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC
Confidence 3445666666677777777777665532 2 11123345677788899999999999999987766655
Q ss_pred chh-HHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004943 482 SKS-MQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQ 558 (722)
Q Consensus 482 ~~~-~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~ 558 (722)
.+. ++.++.+..|.+...-|.|+. .-.++.|+-... .. .+.++--.+|......|++..|+..|.+-..
T Consensus 126 ~P~~~rd~ARlraa~lLvD~gsy~d---V~srvepLa~d~---n~--mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 126 IPQIGRDLARLRAAYLLVDNGSYDD---VSSRVEPLAGDG---NP--MRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred CcchhhHHHHHHHHHHHhccccHHH---HHHHhhhccCCC---Ch--hHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 554 778999998888877777665 333444552211 11 2667777899999999999999999987654
No 237
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.53 E-value=48 Score=35.19 Aligned_cols=167 Identities=17% Similarity=0.086 Sum_probs=105.7
Q ss_pred HHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCH
Q 004943 345 LVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGF 424 (722)
Q Consensus 345 Lvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~ 424 (722)
.+|=...+..+..|+.+.|.+++..=.+. + +|..+- .++ -|+..-..|+|
T Consensus 53 ~l~EqV~IAAld~~~~~lAq~C~~~L~~~----f--p~S~RV-------------~~l-----------kam~lEa~~~~ 102 (289)
T KOG3060|consen 53 TLYEQVFIAALDTGRDDLAQKCINQLRDR----F--PGSKRV-------------GKL-----------KAMLLEATGNY 102 (289)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHh----C--CCChhH-------------HHH-----------HHHHHHHhhch
Confidence 45556667778889999999988765444 3 232110 011 37777788999
Q ss_pred HHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChh
Q 004943 425 VEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAE 504 (722)
Q Consensus 425 ~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e 504 (722)
++|++.|...++ ..|.-. .++--.=.+..++|.--+|......=++.+- .-.-++..++.+|+..|+++
T Consensus 103 ~~A~e~y~~lL~---ddpt~~-----v~~KRKlAilka~GK~l~aIk~ln~YL~~F~---~D~EAW~eLaeiY~~~~~f~ 171 (289)
T KOG3060|consen 103 KEAIEYYESLLE---DDPTDT-----VIRKRKLAILKAQGKNLEAIKELNEYLDKFM---NDQEAWHELAEIYLSEGDFE 171 (289)
T ss_pred hhHHHHHHHHhc---cCcchh-----HHHHHHHHHHHHcCCcHHHHHHHHHHHHHhc---CcHHHHHHHHHHHHhHhHHH
Confidence 999999998776 234321 1222333455788988888888866555432 22345667789999999998
Q ss_pred HHHHHHHH---hcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 004943 505 SSSQAIDL---IGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAH 561 (722)
Q Consensus 505 ~a~~aL~l---~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~ 561 (722)
.+-=+++. +.|+ ++..-..-|..++..|. ..++.-|+.+|.+||++.-
T Consensus 172 kA~fClEE~ll~~P~-----n~l~f~rlae~~Yt~gg----~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 172 KAAFCLEELLLIQPF-----NPLYFQRLAEVLYTQGG----AENLELARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHHcCCC-----cHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHhCh
Confidence 85555553 3454 11111112445555554 3467889999999999943
No 238
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=85.32 E-value=33 Score=43.94 Aligned_cols=156 Identities=15% Similarity=0.109 Sum_probs=94.7
Q ss_pred HHHHHhCCHHHHHHHHHHHHHhhcchhHHH-----HHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHH
Q 004943 458 QYAHSVGCYSEAAFHYVEAAKITESKSMQA-----MCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASL 532 (722)
Q Consensus 458 ~~~~alG~~~~Al~~f~~AL~l~~~~~~~A-----~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~a 532 (722)
.+....+..+.|...+++||+...-+.... +|++|+=..| |.-+++.+.++++-..|. .+ -.
T Consensus 1466 af~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y---G~eesl~kVFeRAcqycd---~~-------~V 1532 (1710)
T KOG1070|consen 1466 AFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY---GTEESLKKVFERACQYCD---AY-------TV 1532 (1710)
T ss_pred HHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh---CcHHHHHHHHHHHHHhcc---hH-------HH
Confidence 455688999999999999998774443222 3444543333 444445555555444322 10 24
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHH
Q 004943 533 HFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIW 612 (722)
Q Consensus 533 l~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~ 612 (722)
+..|..+|...+.+.+|-++|++-++-.+ + +..+....|...+++.+-+.|...+.+||.-.-+..+. .
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~----q---~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv----~ 1601 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG----Q---TRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHV----E 1601 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc----c---hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhH----H
Confidence 55566667777777777777777666533 1 23456666777777777777777777777766663332 2
Q ss_pred HHHHHHHHHHHcCCchhHhHHHHHH
Q 004943 613 ALSVLTALYQQLGDRGNEMENDEYR 637 (722)
Q Consensus 613 al~~L~~l~~~~Gd~~~A~e~~~~~ 637 (722)
...-.+.+--..||+++++..|+..
T Consensus 1602 ~IskfAqLEFk~GDaeRGRtlfEgl 1626 (1710)
T KOG1070|consen 1602 FISKFAQLEFKYGDAERGRTLFEGL 1626 (1710)
T ss_pred HHHHHHHHHhhcCCchhhHHHHHHH
Confidence 3334455566677777766555543
No 239
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.45 E-value=21 Score=39.30 Aligned_cols=83 Identities=17% Similarity=0.134 Sum_probs=54.5
Q ss_pred HhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 004943 419 LTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYF 498 (722)
Q Consensus 419 l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l 498 (722)
+...||..|+..++-.+.+-++- +..+.-.+|.++..+|+|++|++.|..... ..+.. +-..+|+|.++.
T Consensus 33 ls~rDytGAislLefk~~~~~EE-------E~~~~lWia~C~fhLgdY~~Al~~Y~~~~~-~~~~~--~el~vnLAcc~F 102 (557)
T KOG3785|consen 33 LSNRDYTGAISLLEFKLNLDREE-------EDSLQLWIAHCYFHLGDYEEALNVYTFLMN-KDDAP--AELGVNLACCKF 102 (557)
T ss_pred HhcccchhHHHHHHHhhccchhh-------hHHHHHHHHHHHHhhccHHHHHHHHHHHhc-cCCCC--cccchhHHHHHH
Confidence 34668888988887777544432 335566789999999999999999965544 22222 223456666766
Q ss_pred hcCChhHHHHHHH
Q 004943 499 CIGDAESSSQAID 511 (722)
Q Consensus 499 ~~G~~e~a~~aL~ 511 (722)
-.|.+.++..+.+
T Consensus 103 yLg~Y~eA~~~~~ 115 (557)
T KOG3785|consen 103 YLGQYIEAKSIAE 115 (557)
T ss_pred HHHHHHHHHHHHh
Confidence 6666665444433
No 240
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=84.43 E-value=1.9 Score=32.35 Aligned_cols=28 Identities=21% Similarity=0.188 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 004943 532 LHFAYGLLLMRQQDFQEARNRLAKGLQI 559 (722)
Q Consensus 532 al~~lG~~~~~~G~~~eAk~~L~qAL~l 559 (722)
+++.+|.++..+|++++|.+.|+++++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5788999999999999999999999998
No 241
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=83.98 E-value=12 Score=39.15 Aligned_cols=86 Identities=15% Similarity=0.045 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcC
Q 004943 546 FQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLG 625 (722)
Q Consensus 546 ~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~G 625 (722)
.....+.|.+|..... ..+..++.......||.-|+..|+++.|.+.++.+....++=|=.....-++..|.+++...|
T Consensus 154 s~~iI~lL~~A~~~f~-~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~ 232 (247)
T PF11817_consen 154 SKLIIELLEKAYEQFK-KYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG 232 (247)
T ss_pred HHHHHHHHHHHHHHHH-HhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 4456888999999976 578889999999999999999999999999999999999988888777778888999999999
Q ss_pred CchhHhH
Q 004943 626 DRGNEME 632 (722)
Q Consensus 626 d~~~A~e 632 (722)
|.+....
T Consensus 233 ~~~~~l~ 239 (247)
T PF11817_consen 233 DVEDYLT 239 (247)
T ss_pred CHHHHHH
Confidence 8876644
No 242
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.79 E-value=94 Score=36.21 Aligned_cols=218 Identities=14% Similarity=0.042 Sum_probs=131.8
Q ss_pred chhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHH-HHHHHhhHHHH
Q 004943 340 SAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLL-MQFLENKVAVE 418 (722)
Q Consensus 340 ~~l~aLvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~-a~lLe~Lg~~~ 418 (722)
.++-.|||+=.++.+...-+|.+|-.++..=.. ..-|....|-|+. .-++++--.+.
T Consensus 299 kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~d----------------------esdWS~a~Y~Yfa~cc~l~~~~~~q 356 (546)
T KOG3783|consen 299 KQVKSLMVFERAWLSVGQHQYSRAADSFDLLRD----------------------ESDWSHAFYTYFAGCCLLQNWEVNQ 356 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh----------------------hhhhhHHHHHHHHHHHHhccHHHHH
Confidence 566777777777776666665555443332211 3457777887777 55567777888
Q ss_pred HhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 004943 419 LTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYF 498 (722)
Q Consensus 419 l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l 498 (722)
...|+-+.|....+..-++++..|.... .+.++.+=.+.+-...- +......+.=..-++.+|-
T Consensus 357 ~~~~ne~~a~~~~k~~~~l~~~a~K~~P-~E~f~~RKverf~~~~~---------------~~~~~~la~P~~El~Y~Wn 420 (546)
T KOG3783|consen 357 GAGGNEEKAQLYFKVGEELLANAGKNLP-LEKFIVRKVERFVKRGP---------------LNASILLASPYYELAYFWN 420 (546)
T ss_pred hcccchhHHHHHHHHHHHHHHhccccCc-hhHHHHHHHHHHhcccc---------------ccccccccchHHHHHHHHh
Confidence 8888999999999999999988775322 22233332222211100 0000000100111222221
Q ss_pred --hcCChhHHHHHHH-HhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 004943 499 --CIGDAESSSQAID-LIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLT 575 (722)
Q Consensus 499 --~~G~~e~a~~aL~-l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~ 575 (722)
......+...... +-.|-+. +..++...++.+|.++.+.|+...|..++.-+++---...-|++....++.
T Consensus 421 gf~~~s~~~l~k~~~~~~~~~~~------d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~Y 494 (546)
T KOG3783|consen 421 GFSRMSKNELEKMRAELENPKID------DSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALY 494 (546)
T ss_pred hcccCChhhHHHHHHHHhccCCC------CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHH
Confidence 1112222221111 1122222 334477889999999999999999999999998543335678999999999
Q ss_pred HHHHHHHhCCC-hHHHHHHHHHHHHHH
Q 004943 576 ILGNLALALHD-TVQAREILRSSLTLA 601 (722)
Q Consensus 576 ~LG~~~~a~g~-~~qA~~~l~~Al~lA 601 (722)
.||..++..|- ..++...+..|..-+
T Consensus 495 ElA~l~~~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 495 ELALLYWDLGGGLKEARALLLKAREYA 521 (546)
T ss_pred HHHHHHHhcccChHHHHHHHHHHHhhc
Confidence 99999999998 777777777665543
No 243
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=83.28 E-value=7.3 Score=33.74 Aligned_cols=72 Identities=19% Similarity=0.145 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCh
Q 004943 532 LHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDI 607 (722)
Q Consensus 532 al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~ 607 (722)
-..--|.-...+++..+|...+++||+... ++..-=.+|-.|..+|...|+++++++..-.=+.+|+++.||
T Consensus 8 ~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~----~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled~ 79 (80)
T PF10579_consen 8 QQIEKGLKLYHQNETQQALQKWRKALEKIT----DREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELEDP 79 (80)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhhcC----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 334456666688889999999999998744 333444677788888999999999999999999999988886
No 244
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=82.84 E-value=1.1e+02 Score=36.83 Aligned_cols=65 Identities=18% Similarity=0.194 Sum_probs=42.2
Q ss_pred HHHHhhHHHHHhhCCHHHHHHHHHH------HHHHHHh-CCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 004943 409 QFLENKVAVELTRSGFVEAQEALVQ------MKNWFIR-FPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAA 477 (722)
Q Consensus 409 ~lLe~Lg~~~l~~g~~~eA~~~l~~------Al~l~~~-~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL 477 (722)
.+...-|-++-..-+++.|+++|+. |+++.+= +|.. .-.+.-.-|......|.++.|..||.+|-
T Consensus 662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~e----vv~lee~wg~hl~~~~q~daainhfiea~ 733 (1636)
T KOG3616|consen 662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEE----VVKLEEAWGDHLEQIGQLDAAINHFIEAN 733 (1636)
T ss_pred HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHH----HhhHHHHHhHHHHHHHhHHHHHHHHHHhh
Confidence 3334456666666677777776653 4444332 3442 22456667888999999999999997764
No 245
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=82.80 E-value=10 Score=39.81 Aligned_cols=98 Identities=15% Similarity=0.064 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhhcch---------h------HHHHHHHHHHHHHHhcCChhHHHHHHHHhcchh
Q 004943 453 EMLRGQYAHSVGCYSEAAFHYVEAAKITESK---------S------MQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVY 517 (722)
Q Consensus 453 ~~llG~~~~alG~~~~Al~~f~~AL~l~~~~---------~------~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~ 517 (722)
+.-.|--....|+|.+|..-|++|+...++. . ...-.++|...+++..|++-+..+... ++.
T Consensus 181 l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~s---eiL 257 (329)
T KOG0545|consen 181 LHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCS---EIL 257 (329)
T ss_pred HHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHH---HHH
Confidence 3445555567888888888888886544322 1 234557888889998888644332222 222
Q ss_pred cccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 004943 518 QMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQI 559 (722)
Q Consensus 518 r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~l 559 (722)
+..+ .+ . -+||.-|.+|..-=+..||++-|..+|++
T Consensus 258 ~~~~--~n--v--KA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 258 RHHP--GN--V--KAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred hcCC--ch--H--HHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 2222 11 2 36888889888888999999999999988
No 246
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=82.61 E-value=1.4 Score=29.47 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH
Q 004943 531 SLHFAYGLLLMRQQDFQEARNRLAK 555 (722)
Q Consensus 531 ~al~~lG~~~~~~G~~~eAk~~L~q 555 (722)
.+.+.+|.++..+|++++|++.+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 3677899999999999999999874
No 247
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=82.03 E-value=2.6 Score=31.59 Aligned_cols=29 Identities=24% Similarity=0.230 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHH
Q 004943 573 YLTILGNLALALHDTVQAREILRSSLTLA 601 (722)
Q Consensus 573 ~L~~LG~~~~a~g~~~qA~~~l~~Al~lA 601 (722)
++..||..|...|++++|+++++.++...
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 67889999999999999999999999864
No 248
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=81.88 E-value=71 Score=33.42 Aligned_cols=67 Identities=19% Similarity=0.107 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHH
Q 004943 526 VREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREI 593 (722)
Q Consensus 526 ~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~ 593 (722)
.|........+|.-|+..|++++|..+|+.++...+ ..|=..+...++..|-..+...|+.+.....
T Consensus 174 ~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr-~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 174 NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYR-REGWWSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-hCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 445677888999999999999999999999988876 5888889999999999999999988865543
No 249
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.81 E-value=17 Score=40.08 Aligned_cols=54 Identities=13% Similarity=0.001 Sum_probs=38.5
Q ss_pred hHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004943 414 KVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVE 475 (722)
Q Consensus 414 Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~ 475 (722)
+|.|+...|+|.+|+..|+-+.+ ...++. -+..+++-+...+|.|.+|...-..
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~--~~~~~~------el~vnLAcc~FyLg~Y~eA~~~~~k 116 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMN--KDDAPA------ELGVNLACCKFYLGQYIEAKSIAEK 116 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhc--cCCCCc------ccchhHHHHHHHHHHHHHHHHHHhh
Confidence 79999999999999999988877 333331 2244555666777777777766543
No 250
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=81.61 E-value=2.3 Score=27.26 Aligned_cols=30 Identities=23% Similarity=0.164 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhh
Q 004943 451 MIEMLRGQYAHSVGCYSEAAFHYVEAAKIT 480 (722)
Q Consensus 451 ~i~~llG~~~~alG~~~~Al~~f~~AL~l~ 480 (722)
.+++.+|.++..+|++++|...|+.+++..
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 357889999999999999999999888653
No 251
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=81.18 E-value=85 Score=33.91 Aligned_cols=190 Identities=12% Similarity=0.105 Sum_probs=128.6
Q ss_pred HHHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHH
Q 004943 409 QFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAM 488 (722)
Q Consensus 409 ~lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~ 488 (722)
..+-+++-++.+.|++..-.+.+.+..+.+..+... ...-.+..++-.+-..-..++.-...+...+.-+. +.-+.+
T Consensus 46 ~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~--k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~-rEkr~f 122 (421)
T COG5159 46 ATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKP--KITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWAD-REKRKF 122 (421)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcch--hHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHH-HHHHHH
Confidence 334578999999999999888888888888876442 12335556666666666677776666655554332 111111
Q ss_pred HHH----HHHHHHHhcCChhHHHHHHHHhcchhccc---ccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 004943 489 CHA----YAAVSYFCIGDAESSSQAIDLIGPVYQMK---DTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAH 561 (722)
Q Consensus 489 all----nla~v~l~~G~~e~a~~aL~l~~~l~r~~---~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~ 561 (722)
... -+..+|+..| .+.+++.+++|+.+.. ++-.. -...+.--..+|+.-.+...++..|.-|-..|+
T Consensus 123 Lr~~Le~Kli~l~y~~~---~YsdalalIn~ll~ElKk~DDK~~---Li~vhllESKvyh~irnv~KskaSLTaArt~An 196 (421)
T COG5159 123 LRLELECKLIYLLYKTG---KYSDALALINPLLHELKKYDDKIN---LITVHLLESKVYHEIRNVSKSKASLTAARTLAN 196 (421)
T ss_pred HHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHHHhhcCccc---eeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhh
Confidence 111 1233344433 3677777777764433 22111 122333345677788889999999999999999
Q ss_pred HhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCh
Q 004943 562 NHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDI 607 (722)
Q Consensus 562 ~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~ 607 (722)
.....+++.|+.=..=|-.+....|+.-|-.++-+|+.-+.-..+.
T Consensus 197 s~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d 242 (421)
T COG5159 197 SAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMD 242 (421)
T ss_pred ccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccch
Confidence 8889999999877777777778889999999999999888777665
No 252
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=81.01 E-value=14 Score=37.72 Aligned_cols=94 Identities=26% Similarity=0.246 Sum_probs=71.2
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhhcchh--HHHHHHHHHHHHHHhcCChhH----HHHHHHHhcchhcccccccCh
Q 004943 453 EMLRGQYAHSVGCYSEAAFHYVEAAKITESKS--MQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGV 526 (722)
Q Consensus 453 ~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~--~~A~allnla~v~l~~G~~e~----a~~aL~l~~~l~r~~~~~~~~ 526 (722)
+-.-|--...-|+|++|..-|++||..+.... .+.+++.|-|.+.+.++..+. +..++++ .|.|
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel-~pty--------- 167 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL-NPTY--------- 167 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc-Cchh---------
Confidence 33445555788999999999999999887664 778999999999999888765 5566654 3331
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 004943 527 REEASLHFAYGLLLMRQQDFQEARNRLAKGLQI 559 (722)
Q Consensus 527 ~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~l 559 (722)
.+ ++..-+.+|.....|++|..-|.+.+++
T Consensus 168 -~k--Al~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 168 -EK--ALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred -HH--HHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 13 4556678888888999999999988877
No 253
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=80.87 E-value=76 Score=35.04 Aligned_cols=195 Identities=12% Similarity=0.051 Sum_probs=118.6
Q ss_pred HhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchh---HHHH
Q 004943 412 ENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS---MQAM 488 (722)
Q Consensus 412 e~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~---~~A~ 488 (722)
-++|-++...|+..+=...+......+..++.. ...-.+..+.-.+...-+..+.=..++.+++.-+.... .+--
T Consensus 52 lel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Ka--kaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~ 129 (411)
T KOG1463|consen 52 LELGDLLAKEGDAEELRDLITSLRPFLSSVSKA--KAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQS 129 (411)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHHhhhH--HHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHH
Confidence 356777778888877777777777766666542 11222333333333333344444555554443322211 1111
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhcchhccc---ccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 004943 489 CHAYAAVSYFCIGDAESSSQAIDLIGPVYQMK---DTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMG 565 (722)
Q Consensus 489 allnla~v~l~~G~~e~a~~aL~l~~~l~r~~---~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~g 565 (722)
.-..+..+|...++ +.+|+.++.++.+.. ++.. + -.....--..+|+...+...||..|.-|-..|+....
T Consensus 130 Learli~Ly~d~~~---YteAlaL~~~L~rElKKlDDK~-l--Lvev~llESK~y~~l~Nl~KakasLTsART~AnaiYc 203 (411)
T KOG1463|consen 130 LEARLIRLYNDTKR---YTEALALINDLLRELKKLDDKI-L--LVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYC 203 (411)
T ss_pred HHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHhccccc-c--eeeehhhhhHHHHHHhcchhHHHHHHHHHHhhccccc
Confidence 11223444444333 555666555543332 2211 1 1122233345667778899999999999999998889
Q ss_pred ChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHH
Q 004943 566 NLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWAL 614 (722)
Q Consensus 566 d~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al 614 (722)
++++.|..=..=|-.+.+..|+.-|-.+|=+|++=+..++|...-..++
T Consensus 204 pPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sL 252 (411)
T KOG1463|consen 204 PPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSL 252 (411)
T ss_pred CHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHH
Confidence 9999997777777788888899999999999999999999864434443
No 254
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=80.71 E-value=85 Score=33.93 Aligned_cols=226 Identities=10% Similarity=-0.006 Sum_probs=130.6
Q ss_pred HHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchh--HHHHHHHHHHH
Q 004943 418 ELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS--MQAMCHAYAAV 495 (722)
Q Consensus 418 ~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~--~~A~allnla~ 495 (722)
.....++.+|+..|.+.+.-.-.-.+....-.-.....+|.++.+.|+|..=-..-.+.-....+.. ..+-.... .
T Consensus 13 ~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiirt--L 90 (421)
T COG5159 13 AVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRT--L 90 (421)
T ss_pred hhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHH--H
Confidence 3445678888888887776432223322222233455678888899988643222211111111100 00000010 1
Q ss_pred HHHhcCChhH-------HHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChH
Q 004943 496 SYFCIGDAES-------SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQ 568 (722)
Q Consensus 496 v~l~~G~~e~-------a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~ 568 (722)
+---.+.++. +..+.+.+....|. + + +-.----+..++...|.|.+|.....--|.--+ ..-|..
T Consensus 91 iekf~~~~dsl~dqi~v~~~~iewA~rEkr~---f--L--r~~Le~Kli~l~y~~~~YsdalalIn~ll~ElK-k~DDK~ 162 (421)
T COG5159 91 IEKFPYSSDSLEDQIKVLTALIEWADREKRK---F--L--RLELECKLIYLLYKTGKYSDALALINPLLHELK-KYDDKI 162 (421)
T ss_pred HHhcCCCCccHHHHHHHHHHHHHHHHHHHHH---H--H--HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-hhcCcc
Confidence 1111122222 23333333222110 0 1 111112244566789999999999988887765 477766
Q ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH-HHcCCchhHhHHHHHHHHHHHHHhHH
Q 004943 569 LVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALY-QQLGDRGNEMENDEYRRKKLDELQKR 647 (722)
Q Consensus 569 l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~-~~~Gd~~~A~e~~~~~~~~~~~l~~~ 647 (722)
..-.+...=+.+|....+...+...+.+|.++|..+.-|+.-..-+.++..++ ....|+.-|..+|=.+..-+..+..+
T Consensus 163 ~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d 242 (421)
T COG5159 163 NLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMD 242 (421)
T ss_pred ceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccch
Confidence 66677778889999999999999999999999999999877555555555544 44557788888877777666666665
Q ss_pred HHHhhh
Q 004943 648 LADAYS 653 (722)
Q Consensus 648 ~~~a~~ 653 (722)
.-.+.+
T Consensus 243 ~kAc~s 248 (421)
T COG5159 243 VKACVS 248 (421)
T ss_pred HHHHHH
Confidence 444443
No 255
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.38 E-value=7.9 Score=41.04 Aligned_cols=111 Identities=14% Similarity=0.085 Sum_probs=81.0
Q ss_pred HHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHHHH
Q 004943 351 VILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEA 430 (722)
Q Consensus 351 ~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~~ 430 (722)
+-..|+-|+.+-+.+|++..-+. ..++....+ ..+++.|.+++++.+.+|++|...
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~----~~kL~~~q~--------------------~~~V~~n~a~i~lg~nn~a~a~r~ 274 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKV----TQKLDGLQG--------------------KIMVLMNSAFLHLGQNNFAEAHRF 274 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHH----Hhhhhccch--------------------hHHHHhhhhhheecccchHHHHHH
Confidence 45678889989999998865544 555554444 677888999999999999999998
Q ss_pred HHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 004943 431 LVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYA 493 (722)
Q Consensus 431 l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnl 493 (722)
+.+.+.. .|. -+..-++-+.+.+++|+...|+....+++..........-.+.|+
T Consensus 275 ~~~i~~~---D~~-----~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL 329 (366)
T KOG2796|consen 275 FTEILRM---DPR-----NAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNL 329 (366)
T ss_pred Hhhcccc---CCC-----chhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHH
Confidence 8776652 221 245578889999999999999999988876554443333344454
No 256
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=80.36 E-value=2.4 Score=27.23 Aligned_cols=29 Identities=21% Similarity=0.381 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 004943 531 SLHFAYGLLLMRQQDFQEARNRLAKGLQI 559 (722)
Q Consensus 531 ~al~~lG~~~~~~G~~~eAk~~L~qAL~l 559 (722)
.+++.+|..+...|++++|...+++++++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 35788999999999999999999999876
No 257
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=79.70 E-value=31 Score=37.19 Aligned_cols=99 Identities=24% Similarity=0.234 Sum_probs=69.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHH---------------HHH
Q 004943 535 AYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRS---------------SLT 599 (722)
Q Consensus 535 ~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~---------------Al~ 599 (722)
.-|.-....|++.+|...|..++.... +. +.+...|++.|...|+.++|...+.. -++
T Consensus 139 ~~~~~~~~~e~~~~a~~~~~~al~~~~-~~------~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ 211 (304)
T COG3118 139 AEAKELIEAEDFGEAAPLLKQALQAAP-EN------SEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIE 211 (304)
T ss_pred HHhhhhhhccchhhHHHHHHHHHHhCc-cc------chHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 344555688999999999999999965 23 34778899999999999888766644 233
Q ss_pred HHHHc---CChhH----------HHHHHHHHHHHHHHcCCchhHhHHHHHHHHH
Q 004943 600 LAKKL---YDIPT----------QIWALSVLTALYQQLGDRGNEMENDEYRRKK 640 (722)
Q Consensus 600 lAkki---~D~~~----------q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~ 640 (722)
+.... +++.. -..+...|+..+...|+++.|.+++=...++
T Consensus 212 ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 212 LLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33333 32211 1334568899999999999998887666655
No 258
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=79.29 E-value=2.2 Score=28.53 Aligned_cols=23 Identities=30% Similarity=0.257 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHH
Q 004943 573 YLTILGNLALALHDTVQAREILR 595 (722)
Q Consensus 573 ~L~~LG~~~~a~g~~~qA~~~l~ 595 (722)
++..||.++...|++++|+..++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45677777777777777776654
No 259
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=79.08 E-value=3 Score=28.46 Aligned_cols=28 Identities=11% Similarity=0.163 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 004943 532 LHFAYGLLLMRQQDFQEARNRLAKGLQI 559 (722)
Q Consensus 532 al~~lG~~~~~~G~~~eAk~~L~qAL~l 559 (722)
+++.+|.++...|++++|...|++.++.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6889999999999999999999998764
No 260
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=78.89 E-value=74 Score=33.23 Aligned_cols=182 Identities=13% Similarity=0.041 Sum_probs=92.8
Q ss_pred hHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchh---HHHHHH
Q 004943 414 KVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS---MQAMCH 490 (722)
Q Consensus 414 Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~---~~A~al 490 (722)
++-+.-..|||+++.+.+.++.+...++..-.+...+.+ |-...|....+.+............+ ....+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsva------yKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~ 80 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVA------YKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIK 80 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHH------HHhccccchHHHHhhhhHhhhhcccchhHHHHHHH
Confidence 677888899999999999999998333333222222222 22334445555555533222221111 111110
Q ss_pred HHHHHHHHhcCCh-hHHHHHHHHhcchhcccccc-----cChHHHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHH
Q 004943 491 AYAAVSYFCIGDA-ESSSQAIDLIGPVYQMKDTI-----NGVREEASLHFAYGLLLMRQQ-----DFQEARNRLAKGLQI 559 (722)
Q Consensus 491 lnla~v~l~~G~~-e~a~~aL~l~~~l~r~~~~~-----~~~~~~A~al~~lG~~~~~~G-----~~~eAk~~L~qAL~l 559 (722)
..--.+- .+- .-+.+.+.++....-..... .....++.++.-++.+. .| -.+.|...|++|+++
T Consensus 81 ~yk~kie---~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~--~~~~~~~~~~~a~~aY~~A~~~ 155 (236)
T PF00244_consen 81 DYKKKIE---DELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFD--SGDEKKEAAEKALEAYEEALEI 155 (236)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCT--THHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccc--cchhhHHHHHHHHHhhhhHHHH
Confidence 0000000 000 01455555554321111111 11112344444444322 33 247799999999999
Q ss_pred HHHhcCC--hHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCC
Q 004943 560 AHNHMGN--LQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYD 606 (722)
Q Consensus 560 a~~~~gd--~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D 606 (722)
+...+.. +-..+.+||.=--.|--.|++++|.++.+.|+.-|-.--|
T Consensus 156 a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~ 204 (236)
T PF00244_consen 156 AKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELD 204 (236)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGG
T ss_pred HhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhc
Confidence 9864554 5555566655333345589999999999999998865433
No 261
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=78.38 E-value=30 Score=37.96 Aligned_cols=114 Identities=17% Similarity=0.227 Sum_probs=84.5
Q ss_pred cccCcchhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhh
Q 004943 335 EWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENK 414 (722)
Q Consensus 335 ~WLpk~~l~aLvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~L 414 (722)
+|=+|-.-..+|+++-+++-... +.++|.+|+++-.+- +.....+++ +| ++. -.+
T Consensus 67 efe~kINplslvei~l~~~~~~~-D~~~al~~Le~i~~~----~~~~~e~~a----------v~------~~~----t~~ 121 (380)
T KOG2908|consen 67 EFETKINPLSLVEILLVVSEQIS-DKDEALEFLEKIIEK----LKEYKEPDA----------VI------YIL----TEI 121 (380)
T ss_pred HHhhccChHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHH----HHhhccchh----------HH------HHH----HHH
Confidence 67777777889988876665554 778999988887777 444444333 11 223 346
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHH
Q 004943 415 VAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHY 473 (722)
Q Consensus 415 g~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f 473 (722)
+.+++..||..++.+.+.......+..+.......+.-+.+-..|+...|++..+-.+.
T Consensus 122 ~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssqYyk~~~d~a~yYr~~ 180 (380)
T KOG2908|consen 122 ARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQYYKKIGDFASYYRHA 180 (380)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHHHHHHHHhHHHHHHHH
Confidence 99999999999999999999999999887655445556667788999999988654443
No 262
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=77.29 E-value=6 Score=43.23 Aligned_cols=93 Identities=14% Similarity=0.059 Sum_probs=71.7
Q ss_pred HHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHHHH
Q 004943 351 VILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEA 430 (722)
Q Consensus 351 ~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~~ 430 (722)
|-.+.-+|.|++|+.||.+|+.. ++.+ ..+.-|-+++|+..-+|+.|...
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~---------~P~N---------------------pV~~~NRA~AYlk~K~FA~AE~D 153 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV---------YPHN---------------------PVYHINRALAYLKQKSFAQAEED 153 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc---------CCCC---------------------ccchhhHHHHHHHHHHHHHHHHh
Confidence 55677789999999999999887 2222 23345678889999999999999
Q ss_pred HHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhc
Q 004943 431 LVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITE 481 (722)
Q Consensus 431 l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~ 481 (722)
...|+.+-+.+ --++..+|....++|...+|...|+.+|++-.
T Consensus 154 C~~AiaLd~~Y--------~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP 196 (536)
T KOG4648|consen 154 CEAAIALDKLY--------VKAYSRRMQARESLGNNMEAKKDCETVLALEP 196 (536)
T ss_pred HHHHHHhhHHH--------HHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCc
Confidence 88888876542 23466678888999999999999998887643
No 263
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=77.25 E-value=1.4e+02 Score=34.04 Aligned_cols=168 Identities=15% Similarity=0.006 Sum_probs=109.5
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhcch---hHHHHHHHHHHHHHHhcCChhH-----HHHHHHHhcchhcccccccChH
Q 004943 456 RGQYAHSVGCYSEAAFHYVEAAKITESK---SMQAMCHAYAAVSYFCIGDAES-----SSQAIDLIGPVYQMKDTINGVR 527 (722)
Q Consensus 456 lG~~~~alG~~~~Al~~f~~AL~l~~~~---~~~A~allnla~v~l~~G~~e~-----a~~aL~l~~~l~r~~~~~~~~~ 527 (722)
...+.++-..+..|-+..+..+-..... ...+-+++.++.++-+ |+... +-+......+ ++ ...
T Consensus 279 ~A~il~A~~q~s~A~~ll~kL~vqc~k~~~~em~~sVLL~~ae~~~~-g~~a~l~lplaL~~~~~~se-y~----ldy-- 350 (482)
T KOG4322|consen 279 FAHILHADEQVSYAYALLNKLMVQCDKGCNEEMLHSVLLTIAEARES-GDTACLNLPLALMFEFKRSE-YS----LDY-- 350 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhc-CCCchhhHHHHHHHHHHHHH-hc----cch--
Confidence 6677788888888888887665444332 2444445555555544 55432 2222222111 11 122
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH------HHHhCCChHHHHHHHHHHHHHH
Q 004943 528 EEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGN------LALALHDTVQAREILRSSLTLA 601 (722)
Q Consensus 528 ~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~------~~~a~g~~~qA~~~l~~Al~lA 601 (722)
.++.+...++..+.-.|.+.+|...+..|..+-.. .|--..-|.+...-+. ...+..+.+.+.+.++.|-..+
T Consensus 351 l~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~-~GgL~drara~fvfanC~lA~a~s~~~e~ld~~~~~L~~A~~~f 429 (482)
T KOG4322|consen 351 LEANENLDLALEHLALGSPKAALPLLHTAVHLILV-QGGLDDRARAIFVFANCTLAFALSCANESLDGFPRYLDLAQSIF 429 (482)
T ss_pred hhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHh-ccchhhcceeEEEEEeeeecchhhhhhhhHHhhHHHHHHHHHHH
Confidence 37888999999999999999999999999988542 3332222211111111 1114457777889999999999
Q ss_pred HHcCChhHHHHHHHHHHHHHHHcCCchhHhH
Q 004943 602 KKLYDIPTQIWALSVLTALYQQLGDRGNEME 632 (722)
Q Consensus 602 kki~D~~~q~~al~~L~~l~~~~Gd~~~A~e 632 (722)
+|++-..-..-+.+.++..|...||..+=.+
T Consensus 430 ~kL~~he~ildv~yf~A~~yn~lGd~~eRn~ 460 (482)
T KOG4322|consen 430 YKLGCHEKILDVTYFSAYQYNHLGDSPERNL 460 (482)
T ss_pred HHccchHHHHHHHHHHHHHHHhhcCchHHHH
Confidence 9999998888999999999999998865444
No 264
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.24 E-value=1.5e+02 Score=34.55 Aligned_cols=209 Identities=14% Similarity=0.081 Sum_probs=124.5
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHH--H
Q 004943 415 VAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHA--Y 492 (722)
Q Consensus 415 g~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~all--n 492 (722)
+-.....|+.+.|+..++-+++ ++ ..-....+.+-+|+.+..+.+|.+|...| ....+...+..|.. -
T Consensus 274 ar~l~~~g~~eaa~~~~~~~v~-----~~-~kQ~~~l~~fE~aw~~v~~~~~~~aad~~----~~L~desdWS~a~Y~Yf 343 (546)
T KOG3783|consen 274 ARILSIKGNSEAAIDMESLSIP-----IR-MKQVKSLMVFERAWLSVGQHQYSRAADSF----DLLRDESDWSHAFYTYF 343 (546)
T ss_pred HHHHHHcccHHHHHHHHHhccc-----HH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHH----HHHHhhhhhhHHHHHHH
Confidence 4455556676666666666555 22 22356788999999999999999999999 44444443332211 1
Q ss_pred HHHHHH-----hcC---ChhHHHHHHHHhcchhcccccc-----------------c----------ChHHHHHHHHHHH
Q 004943 493 AAVSYF-----CIG---DAESSSQAIDLIGPVYQMKDTI-----------------N----------GVREEASLHFAYG 537 (722)
Q Consensus 493 la~v~l-----~~G---~~e~a~~aL~l~~~l~r~~~~~-----------------~----------~~~~~A~al~~lG 537 (722)
.|-+++ ++| +-+.+....+......+..+++ . +..+-++.++..
T Consensus 344 a~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~~El~Y~Wngf- 422 (546)
T KOG3783|consen 344 AGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASILLASPYYELAYFWNGF- 422 (546)
T ss_pred HHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhccccccccccccchHHHHHHHHhhc-
Confidence 122221 111 1111111111111111110000 0 111222222221
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHH-HHHHHcCChhHHHHHHHH
Q 004943 538 LLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSL-TLAKKLYDIPTQIWALSV 616 (722)
Q Consensus 538 ~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al-~lAkki~D~~~q~~al~~ 616 (722)
.....++.. -++..++. . ...|.-.++....++|.+....|+.++|...+.-.+ ...++..|++..-.|+..
T Consensus 423 ----~~~s~~~l~-k~~~~~~~-~-~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YE 495 (546)
T KOG3783|consen 423 ----SRMSKNELE-KMRAELEN-P-KIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYE 495 (546)
T ss_pred ----ccCChhhHH-HHHHHHhc-c-CCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHH
Confidence 223333322 22333333 2 244777889999999999999999999999998877 456777999999999999
Q ss_pred HHHHHHHcCC-chhHhHHHHHHHHHH
Q 004943 617 LTALYQQLGD-RGNEMENDEYRRKKL 641 (722)
Q Consensus 617 L~~l~~~~Gd-~~~A~e~~~~~~~~~ 641 (722)
|+-+|-..|. ..++..++..+....
T Consensus 496 lA~l~~~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 496 LALLYWDLGGGLKEARALLLKAREYA 521 (546)
T ss_pred HHHHHHhcccChHHHHHHHHHHHhhc
Confidence 9999999998 677777777776666
No 265
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=75.97 E-value=1.5e+02 Score=33.78 Aligned_cols=88 Identities=11% Similarity=-0.146 Sum_probs=72.9
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcC
Q 004943 526 VREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLY 605 (722)
Q Consensus 526 ~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~ 605 (722)
...++.++..++.++.+-+....+..++-+++.... +.......+.+-..|+...+..|-+++|.+.+..|+.+----|
T Consensus 309 ~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~s-ey~ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~G 387 (482)
T KOG4322|consen 309 EEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRS-EYSLDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQG 387 (482)
T ss_pred HHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHH-HhccchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhcc
Confidence 445688999999999888889999999999999854 7888899999999999999999999999999999988765555
Q ss_pred ChhHHHHHH
Q 004943 606 DIPTQIWAL 614 (722)
Q Consensus 606 D~~~q~~al 614 (722)
-......+.
T Consensus 388 gL~drara~ 396 (482)
T KOG4322|consen 388 GLDDRARAI 396 (482)
T ss_pred chhhcceeE
Confidence 444444443
No 266
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=74.09 E-value=55 Score=33.69 Aligned_cols=99 Identities=19% Similarity=0.172 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCh
Q 004943 528 EEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDI 607 (722)
Q Consensus 528 ~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~ 607 (722)
.++..+-.-|.-.+..|+|.+|..-|++||.+.- -......+..+.+-|..+..++..+.|.+-+..|+.+.
T Consensus 93 ~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp--~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~------ 164 (271)
T KOG4234|consen 93 EKADSLKKEGNELFKNGDYEEANSKYQEALESCP--STSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN------ 164 (271)
T ss_pred HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCc--cccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC------
Confidence 5677888889999999999999999999999964 33446777778888899999999999998888887764
Q ss_pred hHHHHHHHHHHHHHHHcCCchhHhHHH
Q 004943 608 PTQIWALSVLTALYQQLGDRGNEMEND 634 (722)
Q Consensus 608 ~~q~~al~~L~~l~~~~Gd~~~A~e~~ 634 (722)
++-..++.--+.+|.....++.|.+-|
T Consensus 165 pty~kAl~RRAeayek~ek~eealeDy 191 (271)
T KOG4234|consen 165 PTYEKALERRAEAYEKMEKYEEALEDY 191 (271)
T ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 222345555577888777677766543
No 267
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=73.97 E-value=5.9 Score=29.38 Aligned_cols=31 Identities=19% Similarity=0.338 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 004943 531 SLHFAYGLLLMRQQDFQEARNRLAKGLQIAH 561 (722)
Q Consensus 531 ~al~~lG~~~~~~G~~~eAk~~L~qAL~la~ 561 (722)
.++..+|.+....++|++|..-|.+||++-.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~ 32 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQE 32 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999943
No 268
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=73.81 E-value=6.5 Score=26.71 Aligned_cols=29 Identities=17% Similarity=0.031 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhh
Q 004943 452 IEMLRGQYAHSVGCYSEAAFHYVEAAKIT 480 (722)
Q Consensus 452 i~~llG~~~~alG~~~~Al~~f~~AL~l~ 480 (722)
+++.+|.++...|++++|...|+..++..
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 46788999999999999999998777654
No 269
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=73.59 E-value=6.3 Score=29.24 Aligned_cols=35 Identities=23% Similarity=0.340 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcC
Q 004943 571 SQYLTILGNLALALHDTVQAREILRSSLTLAKKLY 605 (722)
Q Consensus 571 a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~ 605 (722)
|.++..||++.+..+++++|..=+++|+.+-+++-
T Consensus 1 Adv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~ 35 (38)
T PF10516_consen 1 ADVYDLLGEISLENENFEQAIEDYEKALEIQEELL 35 (38)
T ss_pred CcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 35788999999999999999999999999988764
No 270
>PRK10941 hypothetical protein; Provisional
Probab=73.50 E-value=22 Score=38.03 Aligned_cols=70 Identities=13% Similarity=0.019 Sum_probs=56.7
Q ss_pred HHHHHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchh
Q 004943 407 LMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS 484 (722)
Q Consensus 407 ~a~lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~ 484 (722)
...++.|+-.++...++|..|+++.+..+.+.-..| .-..-+|.+++.+||+..|..-++.-+..+.+..
T Consensus 180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp--------~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp 249 (269)
T PRK10941 180 IRKLLDTLKAALMEEKQMELALRASEALLQFDPEDP--------YEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDP 249 (269)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCH--------HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCch
Confidence 567789999999999999999999999998743332 3356689999999999999999977776664443
No 271
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=72.93 E-value=30 Score=32.71 Aligned_cols=94 Identities=15% Similarity=0.196 Sum_probs=70.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCC-----hhHH--HH--HHHHHHHHHHHcCCchhHhHHHHHHHHHHHHH
Q 004943 574 LTILGNLALALHDTVQAREILRSSLTLAKKLYD-----IPTQ--IW--ALSVLTALYQQLGDRGNEMENDEYRRKKLDEL 644 (722)
Q Consensus 574 L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D-----~~~q--~~--al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~l 644 (722)
++++|+..+..+++-.|.-++..|+++..++.. .... +| +-..|+..++..||++=++.+++.+.++.-.|
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 578999999999999999999999999999941 1111 22 22689999999999999999999998887777
Q ss_pred hHHHHHhhhchhhHHHHhhhcchhhcc
Q 004943 645 QKRLADAYSSIHHIELISKVKLEVQQF 671 (722)
Q Consensus 645 ~~~~~~a~~~~~h~~l~~~~~~~~~~~ 671 (722)
.+. +-. ++-.+.|+-.+-+-..|
T Consensus 84 iPQ---Cp~-~~C~afi~sLGCCk~AL 106 (140)
T PF10952_consen 84 IPQ---CPN-TECEAFIDSLGCCKKAL 106 (140)
T ss_pred ccC---CCC-cchHHHHHhhhccHHHH
Confidence 654 332 33334666666555444
No 272
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=72.86 E-value=56 Score=34.58 Aligned_cols=94 Identities=13% Similarity=0.055 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH------------HHHHcCChhHHHHHHH
Q 004943 548 EARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLT------------LAKKLYDIPTQIWALS 615 (722)
Q Consensus 548 eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~------------lAkki~D~~~q~~al~ 615 (722)
+-+.+..+|++.+ +..+.+.+.......+|..++..|++.+|+.++--+-. +..+-.+.....++..
T Consensus 68 ~r~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~R 146 (260)
T PF04190_consen 68 ERKKFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIAR 146 (260)
T ss_dssp THHHHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHH
T ss_pred hHHHHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHH
Confidence 4688899999998 45666888889999999999999999999988743311 1122222222222222
Q ss_pred HHHHHHHHcCCchhHhHHHHHHHHHHHH
Q 004943 616 VLTALYQQLGDRGNEMENDEYRRKKLDE 643 (722)
Q Consensus 616 ~L~~l~~~~Gd~~~A~e~~~~~~~~~~~ 643 (722)
.. --|...|+...|.+.+..+.+...+
T Consensus 147 aV-L~yL~l~n~~~A~~~~~~f~~~~~~ 173 (260)
T PF04190_consen 147 AV-LQYLCLGNLRDANELFDTFTSKLIE 173 (260)
T ss_dssp HH-HHHHHTTBHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHhcCHHHHHHHHHHHHHHHhc
Confidence 21 1356677778888777777766443
No 273
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=72.65 E-value=32 Score=36.26 Aligned_cols=106 Identities=15% Similarity=0.160 Sum_probs=75.6
Q ss_pred hccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHHHHHHH
Q 004943 354 GRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQ 433 (722)
Q Consensus 354 ~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~~l~~ 433 (722)
+.-.|+|.+|...|++|+..++...- +.-++ .+.|.-- -.+..-++-|...|++..|+|-+++++-.+
T Consensus 188 lfk~~~ykEA~~~YreAi~~l~~L~l--kEkP~--------e~eW~eL--dk~~tpLllNy~QC~L~~~e~yevleh~se 255 (329)
T KOG0545|consen 188 LFKLGRYKEASSKYREAIICLRNLQL--KEKPG--------EPEWLEL--DKMITPLLLNYCQCLLKKEEYYEVLEHCSE 255 (329)
T ss_pred hhhhccHHHHHHHHHHHHHHHHHHHh--ccCCC--------ChHHHHH--HHhhhHHHHhHHHHHhhHHHHHHHHHHHHH
Confidence 34568899999999999999665332 22344 4556311 112345567889999999999999998776
Q ss_pred HHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 004943 434 MKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKI 479 (722)
Q Consensus 434 Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l 479 (722)
.+. ..|+. --+++.+|-.+.+.=+.++|.+-|..+|.+
T Consensus 256 iL~---~~~~n-----vKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 256 ILR---HHPGN-----VKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHh---cCCch-----HHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 655 45553 244777788888888999999999887765
No 274
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=72.56 E-value=28 Score=32.88 Aligned_cols=53 Identities=17% Similarity=0.179 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhhcchh------------HHHHHHHHHHHHHHhcCChhH
Q 004943 453 EMLRGQYAHSVGCYSEAAFHYVEAAKITESKS------------MQAMCHAYAAVSYFCIGDAES 505 (722)
Q Consensus 453 ~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~------------~~A~allnla~v~l~~G~~e~ 505 (722)
|+++|..+...+++-.|.-+|++|+.++.+.. .......|+|..|...||++.
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~y 68 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDY 68 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHH
Confidence 68899999999999999999999998776541 445667999999999999763
No 275
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=72.03 E-value=98 Score=34.49 Aligned_cols=145 Identities=14% Similarity=0.026 Sum_probs=87.7
Q ss_pred HHHHHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhC-Cchh--------------------hhhHHHHHHHHHHHHHHhCC
Q 004943 407 LMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRF-PTIL--------------------QACESMIEMLRGQYAHSVGC 465 (722)
Q Consensus 407 ~a~lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~-~d~~--------------------~~~~a~i~~llG~~~~alG~ 465 (722)
++-.|-.++.++..+|++..|.+.+++|+=.|++. +..+ ...--.+...-.......||
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~ 118 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGC 118 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCc
Confidence 77777889999999999999999999999887751 1100 01111333444556678999
Q ss_pred HHHHHHHHHHHHHhh--cchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcch-hcc-cccccChHHHHHHHHHHHHHHH
Q 004943 466 YSEAAFHYVEAAKIT--ESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPV-YQM-KDTINGVREEASLHFAYGLLLM 541 (722)
Q Consensus 466 ~~~Al~~f~~AL~l~--~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l-~r~-~~~~~~~~~~A~al~~lG~~~~ 541 (722)
+..|++.++--+.+- +|+-+.-+.+...| ++.++++-+-+..+..... .+. .+..+ ..-+..+.+++
T Consensus 119 ~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~A---Lrs~~y~~Li~~~~~~~~~~~~~~~~~lP------n~a~S~aLA~~ 189 (360)
T PF04910_consen 119 WRTALEWCKLLLSLDPDEDPLGVLLFIDYYA---LRSRQYQWLIDFSESPLAKCYRNWLSLLP------NFAFSIALAYF 189 (360)
T ss_pred HHHHHHHHHHHHhcCCCCCcchhHHHHHHHH---HhcCCHHHHHHHHHhHhhhhhhhhhhhCc------cHHHHHHHHHH
Confidence 999999997655443 34444444433333 3445555433333222111 111 00011 23455566666
Q ss_pred hcCCH---------------HHHHHHHHHHHHHH
Q 004943 542 RQQDF---------------QEARNRLAKGLQIA 560 (722)
Q Consensus 542 ~~G~~---------------~eAk~~L~qAL~la 560 (722)
..++. ++|...|.+|+...
T Consensus 190 ~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f 223 (360)
T PF04910_consen 190 RLEKEESSQSSAQSGRSENSESADEALQKAILRF 223 (360)
T ss_pred HhcCccccccccccccccchhHHHHHHHHHHHHh
Confidence 67776 89999999998873
No 276
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=71.98 E-value=17 Score=39.88 Aligned_cols=60 Identities=8% Similarity=0.078 Sum_probs=46.9
Q ss_pred HhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 004943 412 ENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKI 479 (722)
Q Consensus 412 e~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l 479 (722)
-..|--|..+|.|+||+.+|..++++.-- -+..+.+++..|.....|..|+..|..|+.+
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~--------NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL 160 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPH--------NPVYHINRALAYLKQKSFAQAEEDCEAAIAL 160 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCC--------CccchhhHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 34588899999999999999999886422 2345777888888888888888888777654
No 277
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=71.95 E-value=16 Score=31.71 Aligned_cols=61 Identities=20% Similarity=0.176 Sum_probs=48.0
Q ss_pred hCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHHHHHHHhH
Q 004943 583 ALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDELQK 646 (722)
Q Consensus 583 a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~l~~ 646 (722)
...+.++|...++.++. ++.+++..-.++--|..+|...|++...+++.-.-..++.++..
T Consensus 18 ~~~~~~~Al~~W~~aL~---k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled 78 (80)
T PF10579_consen 18 HQNETQQALQKWRKALE---KITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELED 78 (80)
T ss_pred ccchHHHHHHHHHHHHh---hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 45677889999999886 55566666778889999999999999998877777777776543
No 278
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=71.91 E-value=22 Score=40.89 Aligned_cols=102 Identities=14% Similarity=0.028 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHH------------------HHHHHHHHHHHHhCCChHHHHH
Q 004943 531 SLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLV------------------SQYLTILGNLALALHDTVQARE 592 (722)
Q Consensus 531 ~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~------------------a~~L~~LG~~~~a~g~~~qA~~ 592 (722)
.+|..++. .......||+++|++|++.+...+|..+.. ..+-..|+......|+.+||.+
T Consensus 203 dAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk 280 (539)
T PF04184_consen 203 DAYILLAE--EEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIK 280 (539)
T ss_pred HHHhhccc--ccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHH
Confidence 45555544 234557888899999988877666553211 2345678899999999999999
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHH
Q 004943 593 ILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRR 638 (722)
Q Consensus 593 ~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~ 638 (722)
|++.=+...- ..| -.-+..+|-+.+...++++++...+..+.
T Consensus 281 ~~rdLlke~p-~~~---~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 281 MFRDLLKEFP-NLD---NLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHhhCC-ccc---hhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 9887654442 122 25578888889999999988887776664
No 279
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=71.51 E-value=29 Score=33.81 Aligned_cols=89 Identities=20% Similarity=0.185 Sum_probs=54.9
Q ss_pred HhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHH
Q 004943 412 ENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHA 491 (722)
Q Consensus 412 e~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~all 491 (722)
-.+..+.+..++++++...+..+.-+.-+.+ -+...-|+++...|++++|+..|+.-...... ..++.-
T Consensus 14 i~~~~~aL~~~d~~D~e~lLdALrvLrP~~~--------e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~---~p~~kA 82 (153)
T TIGR02561 14 IEVLMYALRSADPYDAQAMLDALRVLRPNLK--------ELDMFDGWLLIARGNYDEAARILRELLSSAGA---PPYGKA 82 (153)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCcc--------ccchhHHHHHHHcCCHHHHHHHHHhhhccCCC---chHHHH
Confidence 3456677779999998877655544432233 34778899999999999999999644333222 222222
Q ss_pred HHHHHHHhcCChh---HHHHHHH
Q 004943 492 YAAVSYFCIGDAE---SSSQAID 511 (722)
Q Consensus 492 nla~v~l~~G~~e---~a~~aL~ 511 (722)
-++.+..-.||++ .+.++++
T Consensus 83 L~A~CL~al~Dp~Wr~~A~~~le 105 (153)
T TIGR02561 83 LLALCLNAKGDAEWHVHADEVLA 105 (153)
T ss_pred HHHHHHHhcCChHHHHHHHHHHH
Confidence 3344444556754 2555553
No 280
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=70.41 E-value=3.2 Score=29.67 Aligned_cols=32 Identities=22% Similarity=0.190 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHH
Q 004943 553 LAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAR 591 (722)
Q Consensus 553 L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~ 591 (722)
|++|+++ . ..-+.+++.||.++...|+.++|+
T Consensus 2 y~kAie~-~------P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIEL-N------PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHH-C------CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 5667776 2 333568999999999999999986
No 281
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=69.76 E-value=34 Score=33.70 Aligned_cols=91 Identities=15% Similarity=0.173 Sum_probs=59.1
Q ss_pred HHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHH
Q 004943 410 FLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMC 489 (722)
Q Consensus 410 lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~a 489 (722)
.|-.+..+.+..++.+++...+....-+ + | ..+-+...-|+.+...|++++|+..|++... +..+..+|
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvL-R--P-----~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~---~~~~~p~~ 80 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVL-R--P-----EFPELDLFDGWLHIVRGDWDDALRLLRELEE---RAPGFPYA 80 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHh-C--C-----CchHHHHHHHHHHHHhCCHHHHHHHHHHHhc---cCCCChHH
Confidence 3445678888899999988776544443 2 2 2344578889999999999999999975432 22233333
Q ss_pred HHHHHHHHHhcCChh---HHHHHHH
Q 004943 490 HAYAAVSYFCIGDAE---SSSQAID 511 (722)
Q Consensus 490 llnla~v~l~~G~~e---~a~~aL~ 511 (722)
.--++.++...||++ .+.++++
T Consensus 81 kALlA~CL~~~~D~~Wr~~A~evle 105 (160)
T PF09613_consen 81 KALLALCLYALGDPSWRRYADEVLE 105 (160)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHh
Confidence 333455556667764 2555554
No 282
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=67.81 E-value=15 Score=37.41 Aligned_cols=84 Identities=15% Similarity=0.139 Sum_probs=62.3
Q ss_pred HHHhhcC-ChHHHHHHHHHHHHHHhcCCcchhhhhhhhHHHHHHHHHcCCCchHHHHHHHHHHHhhhhhcccccchhHHH
Q 004943 53 LLLKHTH-NVNHAKSHLERSQLLLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCN 131 (722)
Q Consensus 53 iL~e~T~-N~~~A~thLeka~~l~~~~~~~~dlk~~~~~lLa~~y~~~~~~~~~k~~l~k~i~~~~~~~~~~~~~~W~~~ 131 (722)
++|..|- |++.|+..+.+. ++-+.+++ -+++..||-.|.+.++.. .++++.++++++..+ +-..+-|
T Consensus 113 lYy~Wsr~~d~~A~~~fL~~----E~~~~l~t--~elq~aLAtyY~krD~~K-t~~ll~~~L~l~~~~--~~~n~ei--- 180 (203)
T PF11207_consen 113 LYYHWSRFGDQEALRRFLQL----EGTPELET--AELQYALATYYTKRDPEK-TIQLLLRALELSNPD--DNFNPEI--- 180 (203)
T ss_pred HHHHhhccCcHHHHHHHHHH----cCCCCCCC--HHHHHHHHHHHHccCHHH-HHHHHHHHHHhcCCC--CCCCHHH---
Confidence 5677777 899999998876 77777775 456777898998887655 677999999997652 2333455
Q ss_pred HhhHHHhHhhhcCChHHH
Q 004943 132 FNSQLANAFIIEGDYQSS 149 (722)
Q Consensus 132 f~f~la~~~~~~~d~~~A 149 (722)
+.-+|+++...|++..|
T Consensus 181 -l~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 181 -LKSLASIYQKLKNYEQA 197 (203)
T ss_pred -HHHHHHHHHHhcchhhh
Confidence 34588998888888765
No 283
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=67.58 E-value=16 Score=27.94 Aligned_cols=41 Identities=22% Similarity=0.157 Sum_probs=33.5
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 004943 575 TILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTA 619 (722)
Q Consensus 575 ~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~ 619 (722)
..|+.+|...||.+.|++.+++-+. -+|.+.+..+..+|..
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~----~~~~~q~~eA~~LL~~ 43 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE----EGDEAQRQEARALLAQ 43 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH----cCCHHHHHHHHHHHhc
Confidence 4688999999999999999998883 5777777777777654
No 284
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=67.18 E-value=1.6e+02 Score=34.11 Aligned_cols=67 Identities=13% Similarity=0.097 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Q 004943 530 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLA 601 (722)
Q Consensus 530 A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lA 601 (722)
++++...|..-...|+.+.|+..|.-|+.- - .+--+.+.=.+.. ..-.+.|.++.|++.++.=|...
T Consensus 471 c~~W~kyaElE~~LgdtdRaRaifelAi~q-p-~ldmpellwkaYI---dFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 471 CYAWSKYAELETSLGDTDRARAIFELAISQ-P-ALDMPELLWKAYI---DFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHhcC-c-ccccHHHHHHHhh---hhhhhcchHHHHHHHHHHHHHhc
Confidence 456666666666677777777766655544 1 1212222222211 12334555666666665555443
No 285
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=66.58 E-value=37 Score=43.82 Aligned_cols=180 Identities=17% Similarity=0.161 Sum_probs=106.8
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchh---HHHHHHHHHHHHHHhcCCh---hHHHHHHHHhcch-----
Q 004943 448 CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS---MQAMCHAYAAVSYFCIGDA---ESSSQAIDLIGPV----- 516 (722)
Q Consensus 448 ~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~---~~A~allnla~v~l~~G~~---e~a~~aL~l~~~l----- 516 (722)
+.+...-.+|.++.-.|++.+|+.+|.+|+..++..+ +.|-|+=.++.+.+..+-. -+....+..+-+.
T Consensus 240 ~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~~ 319 (1185)
T PF08626_consen 240 CKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSSTS 319 (1185)
T ss_pred hhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCccC
Confidence 5667888999999999999999999999987665443 4444443333332222211 1111222111110
Q ss_pred -----hcccccccChHHH------H---HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 004943 517 -----YQMKDTINGVREE------A---SLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLAL 582 (722)
Q Consensus 517 -----~r~~~~~~~~~~~------A---~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~ 582 (722)
-...++....+.- + .....+.. .-...+++|..+|.++..... +....-..+.+..-++.+..
T Consensus 320 ~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~--~i~~~~~~~l~~Y~~~~~~~~-~~~p~lv~~E~~lr~~~~l~ 396 (1185)
T PF08626_consen 320 SSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPN--LIPDLYEKALSLYSRSTNDTS-EYVPQLVYSEACLRFARFLV 396 (1185)
T ss_pred ccCcccCCccCCCCCCccccCCCccccchhhccCHh--hhhHHHHHHHHHHHHhhcccc-ccCcchHHHHHHHHHHHHHH
Confidence 0000000000000 0 00001111 122345666666666655533 23445577777777777777
Q ss_pred hCC--------------------ChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhH
Q 004943 583 ALH--------------------DTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNE 630 (722)
Q Consensus 583 a~g--------------------~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A 630 (722)
... ...++.+.+..++.+.-+.-+...|...+..++.+|...|=..++
T Consensus 397 ~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l~~~dqi~i~~~lA~vy~~lG~~RK~ 464 (1185)
T PF08626_consen 397 AQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDLSVEDQIRIYSGLASVYGSLGFHRKK 464 (1185)
T ss_pred HhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHhcchhHHH
Confidence 777 788899999999999887778889999999999999999955433
No 286
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=64.45 E-value=76 Score=29.38 Aligned_cols=100 Identities=12% Similarity=0.118 Sum_probs=62.5
Q ss_pred HHHHHhcCChhHHHHHHHHhcchhcccccccCh----HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHH
Q 004943 494 AVSYFCIGDAESSSQAIDLIGPVYQMKDTINGV----REEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQL 569 (722)
Q Consensus 494 a~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~----~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l 569 (722)
|.-++..|++ .+||+++...+..+++..+. +.+...++.+|. ...+++-=.+||.-+++-+.+..+-...
T Consensus 3 A~~~~~rGnh---iKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~---~ten~d~k~~yLl~sve~~s~a~~Lsp~ 76 (111)
T PF04781_consen 3 AKDYFARGNH---IKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAK---KTENPDVKFRYLLGSVECFSRAVELSPD 76 (111)
T ss_pred HHHHHHccCH---HHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHH---hccCchHHHHHHHHhHHHHHHHhccChh
Confidence 3445566665 56677777766666543321 112333334433 3456666777888888887766666677
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 004943 570 VSQYLTILGNLALALHDTVQAREILRSSLT 599 (722)
Q Consensus 570 ~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~ 599 (722)
-|..|..||.-......++++..-.+++|.
T Consensus 77 ~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 77 SAHSLFELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 789999998876665566666666666654
No 287
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=64.32 E-value=5.4 Score=46.25 Aligned_cols=96 Identities=17% Similarity=0.105 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhH----HHHHHHHhcchhcccccccCh
Q 004943 451 MIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGV 526 (722)
Q Consensus 451 ~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~----a~~aL~l~~~l~r~~~~~~~~ 526 (722)
.+++..|.|+...|+-..|....+.|+... +......++|+|.+.+.-|-.-. +.++|.+. +.
T Consensus 608 ~~ln~aglywr~~gn~~~a~~cl~~a~~~~--p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~---~s-------- 674 (886)
T KOG4507|consen 608 LILNEAGLYWRAVGNSTFAIACLQRALNLA--PLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN---SS-------- 674 (886)
T ss_pred EEeecccceeeecCCcHHHHHHHHHHhccC--hhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc---cc--------
Confidence 568999999999999999999998776432 22445567788888777663222 55555543 11
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 004943 527 REEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAH 561 (722)
Q Consensus 527 ~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~ 561 (722)
+-..++++|..+....+.+.|.++|++|++...
T Consensus 675 --epl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~ 707 (886)
T KOG4507|consen 675 --EPLTFLSLGNAYLALKNISGALEAFRQALKLTT 707 (886)
T ss_pred --CchHHHhcchhHHHHhhhHHHHHHHHHHHhcCC
Confidence 224788999999999999999999999999843
No 288
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=64.21 E-value=2.8e+02 Score=32.19 Aligned_cols=218 Identities=13% Similarity=0.143 Sum_probs=131.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHHHHHHHHHHH
Q 004943 358 GLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNW 437 (722)
Q Consensus 358 g~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~~l~~Al~l 437 (722)
-+.+++.+.++..|++ + |........+| -+| +.-..++-+...|.+.+..|+-.
T Consensus 380 ed~ertr~vyq~~l~l----I---------PHkkFtFaKiW--lmy-----------A~feIRq~~l~~ARkiLG~AIG~ 433 (677)
T KOG1915|consen 380 EDVERTRQVYQACLDL----I---------PHKKFTFAKIW--LMY-----------AQFEIRQLNLTGARKILGNAIGK 433 (677)
T ss_pred hhHHHHHHHHHHHHhh----c---------CcccchHHHHH--HHH-----------HHHHHHHcccHHHHHHHHHHhcc
Confidence 3456777888888877 2 22233346777 222 55667788999999998888775
Q ss_pred HHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhc--c
Q 004943 438 FIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIG--P 515 (722)
Q Consensus 438 ~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~--~ 515 (722)
|-... ++ .+.+ .+-..++.+|....+|..-+.- .+.--.++..-|.+-..+||.+.++..++++- |
T Consensus 434 cPK~K-lF---k~YI-----elElqL~efDRcRkLYEkfle~---~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 434 CPKDK-LF---KGYI-----ELELQLREFDRCRKLYEKFLEF---SPENCYAWSKYAELETSLGDTDRARAIFELAISQP 501 (677)
T ss_pred CCchh-HH---HHHH-----HHHHHHhhHHHHHHHHHHHHhc---ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence 53211 11 1112 2234566777777777543322 12223445556777777888888777777653 3
Q ss_pred hhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCC----------
Q 004943 516 VYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALH---------- 585 (722)
Q Consensus 516 l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g---------- 585 (722)
.. +.+.+.-+++.-|-. ..|.++.|+..|++-|+... ... --.+-+-...|......|
T Consensus 502 ~l----dmpellwkaYIdFEi-----~~~E~ekaR~LYerlL~rt~--h~k-vWisFA~fe~s~~~~~~~~~~~~~e~~~ 569 (677)
T KOG1915|consen 502 AL----DMPELLWKAYIDFEI-----EEGEFEKARALYERLLDRTQ--HVK-VWISFAKFEASASEGQEDEDLAELEITD 569 (677)
T ss_pred cc----ccHHHHHHHhhhhhh-----hcchHHHHHHHHHHHHHhcc--cch-HHHhHHHHhccccccccccchhhhhcch
Confidence 21 123233355555543 67999999999999999842 333 333444444444444455
Q ss_pred -ChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcC
Q 004943 586 -DTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLG 625 (722)
Q Consensus 586 -~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~G 625 (722)
+...|++.++.|.+..+..++....+--+-...+.-..-|
T Consensus 570 ~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G 610 (677)
T KOG1915|consen 570 ENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFG 610 (677)
T ss_pred hHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcC
Confidence 6678999999999999999986554444444433333333
No 289
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=64.18 E-value=66 Score=32.43 Aligned_cols=113 Identities=17% Similarity=0.217 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHhCCCh---HHHHHHHHHHHHHHHHc----CChhHHHHHHHHHHHHHHH----cCCchhHhHHHHH
Q 004943 568 QLVSQYLTILGNLALALHDT---VQAREILRSSLTLAKKL----YDIPTQIWALSVLTALYQQ----LGDRGNEMENDEY 636 (722)
Q Consensus 568 ~l~a~~L~~LG~~~~a~g~~---~qA~~~l~~Al~lAkki----~D~~~q~~al~~L~~l~~~----~Gd~~~A~e~~~~ 636 (722)
...+..|+.=|.+.+.+.+. .++.+|++.|..=.++. ++.+. ++..||.+|.. .+|..+|.++|+.
T Consensus 22 P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hd---Alw~lGnA~ts~A~l~~d~~~A~~~F~k 98 (186)
T PF06552_consen 22 PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHD---ALWCLGNAYTSLAFLTPDTAEAEEYFEK 98 (186)
T ss_dssp TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HH---HHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHH---HHHHHHHHHHHHHhhcCChHHHHHHHHH
Confidence 44467777777777666544 45777888777666554 55544 44444555444 4467788899998
Q ss_pred HHHHHHHHhHHHHHhhhchhhHHHHhhhcchhhccchhhHHhh-hhccccccc
Q 004943 637 RRKKLDELQKRLADAYSSIHHIELISKVKLEVQQFHELDIKRA-MANQSMSVN 688 (722)
Q Consensus 637 ~~~~~~~l~~~~~~a~~~~~h~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 688 (722)
+...++.-.. .+--...++..|.--. .-+.|| .++-++ +..|.+++.
T Consensus 99 A~~~FqkAv~--~~P~ne~Y~ksLe~~~--kap~lh-~e~~~~~~~~q~~~~~ 146 (186)
T PF06552_consen 99 ATEYFQKAVD--EDPNNELYRKSLEMAA--KAPELH-MEIHKQGLGQQAMGGA 146 (186)
T ss_dssp HHHHHHHHHH--H-TT-HHHHHHHHHHH--THHHHH-HHHHHSSS--------
T ss_pred HHHHHHHHHh--cCCCcHHHHHHHHHHH--hhHHHH-HHHHHHHhhhhhccCC
Confidence 8888875221 1222233333332222 235788 555444 455666554
No 290
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=63.46 E-value=2.6e+02 Score=31.48 Aligned_cols=229 Identities=14% Similarity=0.081 Sum_probs=114.3
Q ss_pred hCCHHHHHHHHHHHHHHH-HhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHH
Q 004943 421 RSGFVEAQEALVQMKNWF-IRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES-KSMQAMCHAYAAVSYF 498 (722)
Q Consensus 421 ~g~~~eA~~~l~~Al~l~-~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~-~~~~A~allnla~v~l 498 (722)
+..+..|.+.+...+.-. .++++........+++++-. +...-+|+.=..+...--.+... ....-...-..|....
T Consensus 112 re~~~g~~~~l~~~L~~i~~rLd~~~~ls~div~~lllS-yRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALn 190 (374)
T PF13281_consen 112 RERYSGARKELAKELRRIRQRLDDPELLSPDIVINLLLS-YRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALN 190 (374)
T ss_pred HHHHhhHHHHHHHHHHHHHHhhCCHhhcChhHHHHHHHH-hhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHh
Confidence 555666556666666544 44554322223344555444 46777888777777432222111 1111111222244444
Q ss_pred h---cCChhHHHHHHHH-hcchhcccccccChHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHH
Q 004943 499 C---IGDAESSSQAIDL-IGPVYQMKDTINGVREEASLHFAYGLL--LMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQ 572 (722)
Q Consensus 499 ~---~G~~e~a~~aL~l-~~~l~r~~~~~~~~~~~A~al~~lG~~--~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~ 572 (722)
+ .|+.+.+.+.+.. +.+-.....+..++.|+. +..+-.- +.......+|...|++|-++- .| .-
T Consensus 191 Rrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI--yKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~----~~-~Y--- 260 (374)
T PF13281_consen 191 RRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI--YKDLFLESNFTDRESLDKAIEWYRKGFEIE----PD-YY--- 260 (374)
T ss_pred hcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH--HHHHHHHcCccchHHHHHHHHHHHHHHcCC----cc-cc---
Confidence 5 5666555544443 222111111112222221 2111111 112334677788888777762 23 22
Q ss_pred HHHHHHHHHHhCCC-hHHHHHHHHHHHHHH-----HHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHHHHHHHhH
Q 004943 573 YLTILGNLALALHD-TVQAREILRSSLTLA-----KKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDELQK 646 (722)
Q Consensus 573 ~L~~LG~~~~a~g~-~~qA~~~l~~Al~lA-----kki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~l~~ 646 (722)
.-.+++.+....|. .+...+.-.-++.++ +.+-+....-|....+.++.--.||+++|..+++...+. -+
T Consensus 261 ~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l----~~ 336 (374)
T PF13281_consen 261 SGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL----KP 336 (374)
T ss_pred chHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc----CC
Confidence 22233333444443 333333333333333 445666778999999999999999999999887776544 35
Q ss_pred HHHHhhhchhhHHHHhhh
Q 004943 647 RLADAYSSIHHIELISKV 664 (722)
Q Consensus 647 ~~~~a~~~~~h~~l~~~~ 664 (722)
+...-.|+..-..||.-.
T Consensus 337 ~~W~l~St~~ni~Li~~~ 354 (374)
T PF13281_consen 337 PAWELESTLENIKLIRHF 354 (374)
T ss_pred cchhHHHHHHHHHHHHHH
Confidence 555555666666666543
No 291
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=61.56 E-value=4e+02 Score=33.11 Aligned_cols=162 Identities=15% Similarity=0.074 Sum_probs=90.7
Q ss_pred hHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 004943 414 KVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYA 493 (722)
Q Consensus 414 Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnl 493 (722)
.|....+.|+.++|..+++ ++..-....| ..+-.+-.++..+|.+++|...|+.+.....+.. . +..+
T Consensus 49 kaLsl~r~gk~~ea~~~Le-~~~~~~~~D~-------~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~ee---l-l~~l 116 (932)
T KOG2053|consen 49 KALSLFRLGKGDEALKLLE-ALYGLKGTDD-------LTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEE---L-LYHL 116 (932)
T ss_pred HHHHHHHhcCchhHHHHHh-hhccCCCCch-------HHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHH---H-HHHH
Confidence 5778888999999995543 3332222222 3345566788999999999999988876655521 1 1222
Q ss_pred HHHHHhcCChhH-HHHHHHHhcchhcccccccChHHHHHHHHH-HHHHHHhcCCHHHHHH--HHHHHHHHHHH---hcCC
Q 004943 494 AVSYFCIGDAES-SSQAIDLIGPVYQMKDTINGVREEASLHFA-YGLLLMRQQDFQEARN--RLAKGLQIAHN---HMGN 566 (722)
Q Consensus 494 a~v~l~~G~~e~-a~~aL~l~~~l~r~~~~~~~~~~~A~al~~-lG~~~~~~G~~~eAk~--~L~qAL~la~~---~~gd 566 (722)
=+.|.|.+++.+ -..++.+...+ ++ +++++++ +..+....-.+++... .+-=|=+++.. .-|-
T Consensus 117 FmayvR~~~yk~qQkaa~~LyK~~----pk------~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk 186 (932)
T KOG2053|consen 117 FMAYVREKSYKKQQKAALQLYKNF----PK------RAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGK 186 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC----Cc------ccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCc
Confidence 356777777654 44455554432 11 3344443 3444334455555554 11112222221 1233
Q ss_pred hHHHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 004943 567 LQLVSQYLTILGNLALALHDTVQAREILRSSL 598 (722)
Q Consensus 567 ~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al 598 (722)
-..++....-+ .+.-.+|+.++|.+.+...+
T Consensus 187 ~~s~aE~~Lyl-~iL~~~~k~~eal~~l~~~l 217 (932)
T KOG2053|consen 187 IESEAEIILYL-LILELQGKYQEALEFLAITL 217 (932)
T ss_pred cchHHHHHHHH-HHHHhcccHHHHHHHHHHHH
Confidence 34445555444 56777889999998885443
No 292
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=60.84 E-value=41 Score=39.45 Aligned_cols=96 Identities=16% Similarity=0.012 Sum_probs=66.2
Q ss_pred HHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHHHH
Q 004943 351 VILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEA 430 (722)
Q Consensus 351 ~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~~ 430 (722)
|..-+..|+..-|.+++..|+.. .-.-.+ .-+-+|+.+.+.-|-.-.|-..
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~----~p~~~~-------------------------v~~v~la~~~~~~~~~~da~~~ 664 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNL----APLQQD-------------------------VPLVNLANLLIHYGLHLDATKL 664 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhcc----Chhhhc-------------------------ccHHHHHHHHHHhhhhccHHHH
Confidence 55666667777777777776654 111111 1123456666666666678888
Q ss_pred HHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcch
Q 004943 431 LVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK 483 (722)
Q Consensus 431 l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~ 483 (722)
+.|++.+.. .+++.++..|..+..+.+.+.|+.+|++|++....-
T Consensus 665 l~q~l~~~~--------sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~ 709 (886)
T KOG4507|consen 665 LLQALAINS--------SEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKC 709 (886)
T ss_pred HHHHHhhcc--------cCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCC
Confidence 888888752 355668899999999999999999999999876543
No 293
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=59.06 E-value=2.1e+02 Score=31.07 Aligned_cols=108 Identities=14% Similarity=0.129 Sum_probs=78.1
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchh---HHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhccccccc
Q 004943 448 CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS---MQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTIN 524 (722)
Q Consensus 448 ~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~---~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~ 524 (722)
-.+.+..++|.|+...++.+.+..+..+.++.+-+.+ ..-+|...+|.+| ||..-..+.|+.+.+++..-++ .
T Consensus 113 e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y---~d~~vV~e~lE~~~~~iEkGgD-W 188 (412)
T COG5187 113 EGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIY---GDRKVVEESLEVADDIIEKGGD-W 188 (412)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHhCCC-H
Confidence 4578899999999999999999999998887665555 5567888888887 5555577777777777654433 2
Q ss_pred ChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 004943 525 GVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAH 561 (722)
Q Consensus 525 ~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~ 561 (722)
..+++--++ .|...+...++.+|...|...|....
T Consensus 189 eRrNRyK~Y--~Gi~~m~~RnFkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 189 ERRNRYKVY--KGIFKMMRRNFKEAAILLSDILPTFE 223 (412)
T ss_pred HhhhhHHHH--HHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 233332333 34445566788999999998887743
No 294
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=58.62 E-value=2.7e+02 Score=30.71 Aligned_cols=69 Identities=17% Similarity=0.151 Sum_probs=56.5
Q ss_pred hHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchh
Q 004943 414 KVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS 484 (722)
Q Consensus 414 Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~ 484 (722)
++.+-+.=+|.+--.+.++.|..++++-||..+.+ ..-.--|.|+++..++.+|..+|-.++...++..
T Consensus 147 ~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrN--RlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS~E 215 (393)
T KOG0687|consen 147 KIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRN--RLKVYQGLYCMSVRNFKEAADLFLDSVSTFTSYE 215 (393)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhh--hHHHHHHHHHHHHHhHHHHHHHHHHHccccccee
Confidence 44444555788889999999999999999975543 5555679999999999999999999998877765
No 295
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=58.49 E-value=4e+02 Score=32.11 Aligned_cols=211 Identities=13% Similarity=0.094 Sum_probs=119.1
Q ss_pred hHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh-cchhHHHHHHHH
Q 004943 414 KVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKIT-ESKSMQAMCHAY 492 (722)
Q Consensus 414 Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~-~~~~~~A~alln 492 (722)
+-.+.+..|+.++-...|.+|+.-.. |....+-...+....|..+...|+.+.|...|.+|++.- ......+.++.+
T Consensus 353 ~kRV~l~e~~~~~~i~tyteAv~~vd--P~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~ 430 (835)
T KOG2047|consen 353 HKRVKLYEGNAAEQINTYTEAVKTVD--PKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCA 430 (835)
T ss_pred HhhhhhhcCChHHHHHHHHHHHHccC--cccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHH
Confidence 34556778899999999998887443 443334455778889999999999999999998887532 222233333333
Q ss_pred HHHHHHhcCChhHHHHHHHHhcchhccc--------ccccChHHHH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 004943 493 AAVSYFCIGDAESSSQAIDLIGPVYQMK--------DTINGVREEA----SLHFAYGLLLMRQQDFQEARNRLAKGLQIA 560 (722)
Q Consensus 493 la~v~l~~G~~e~a~~aL~l~~~l~r~~--------~~~~~~~~~A----~al~~lG~~~~~~G~~~eAk~~L~qAL~la 560 (722)
-|..-++ .+.+..|+.+.++.+..+ ++..++..+- -.+--++.....-|-++..|..|.+.+++
T Consensus 431 waemElr---h~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidL- 506 (835)
T KOG2047|consen 431 WAEMELR---HENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDL- 506 (835)
T ss_pred HHHHHHh---hhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-
Confidence 3322222 222666666655432222 1123331121 12222345555778899999999999999
Q ss_pred HHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCC-chhHhHHHHHHH
Q 004943 561 HNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGD-RGNEMENDEYRR 638 (722)
Q Consensus 561 ~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd-~~~A~e~~~~~~ 638 (722)
+ +.-+++.-..-.+|-+- .-.++|-+.++.+..+++ -+. .-.+|...+-.-+-+-.|. .++|++.||.+.
T Consensus 507 r--iaTPqii~NyAmfLEeh----~yfeesFk~YErgI~LFk-~p~-v~diW~tYLtkfi~rygg~klEraRdLFEqaL 577 (835)
T KOG2047|consen 507 R--IATPQIIINYAMFLEEH----KYFEESFKAYERGISLFK-WPN-VYDIWNTYLTKFIKRYGGTKLERARDLFEQAL 577 (835)
T ss_pred h--cCCHHHHHHHHHHHHhh----HHHHHHHHHHHcCCccCC-Ccc-HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 3 66777776665555432 123445555555555442 122 1235555443333333332 255555555443
No 296
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=58.28 E-value=2e+02 Score=31.66 Aligned_cols=132 Identities=16% Similarity=0.152 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchh---HHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccC
Q 004943 449 ESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS---MQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTING 525 (722)
Q Consensus 449 ~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~---~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~ 525 (722)
...++...+.|+...|+-+.|+..|.....-+-+.| ...++...+|..|. |.+-..+.++.+.+++..-++ .+
T Consensus 103 v~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~---D~~lV~~~iekak~liE~GgD-We 178 (393)
T KOG0687|consen 103 VREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYL---DHDLVTESIEKAKSLIEEGGD-WE 178 (393)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhc---cHHHHHHHHHHHHHHHHhCCC-hh
Confidence 457789999999999999999999987776555554 66788899999884 455555666666555444332 33
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-hcCChHHHH-HHHHHHHHHHHhCCCh
Q 004943 526 VREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHN-HMGNLQLVS-QYLTILGNLALALHDT 587 (722)
Q Consensus 526 ~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~-~~gd~~l~a-~~L~~LG~~~~a~g~~ 587 (722)
.+++--+| .|.-.+...++.+|...|-.++..... ++-+ .-.. .+-..-|.+.+...+.
T Consensus 179 RrNRlKvY--~Gly~msvR~Fk~Aa~Lfld~vsTFtS~El~~-Y~~~v~Ytv~~g~i~leR~dl 239 (393)
T KOG0687|consen 179 RRNRLKVY--QGLYCMSVRNFKEAADLFLDSVSTFTSYELMS-YETFVRYTVITGLIALERVDL 239 (393)
T ss_pred hhhhHHHH--HHHHHHHHHhHHHHHHHHHHHcccccceeccc-HHHHHHHHHHHhhheeccchH
Confidence 33333333 245556778899999999999887553 3333 3333 3333334444444433
No 297
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=56.88 E-value=41 Score=34.21 Aligned_cols=83 Identities=17% Similarity=0.130 Sum_probs=49.6
Q ss_pred HHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHHHH
Q 004943 351 VILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEA 430 (722)
Q Consensus 351 ~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~~ 430 (722)
+++..++|++++|.+.+.+|-+.+.+.-+.++.-+. . .+-|+|.-...+|.||.-.
T Consensus 36 aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pe---------------l---------~~ag~~~~a~QEyvEA~~l 91 (204)
T COG2178 36 AIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPE---------------L---------YFAGFVTTALQEYVEATLL 91 (204)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHH---------------H---------HHHHhhcchHHHHHHHHHH
Confidence 577778888999999999888886663334433221 1 1235555556667777666
Q ss_pred HHHHHHHHHhCCchhhhhHHHHHHHHHHH
Q 004943 431 LVQMKNWFIRFPTILQACESMIEMLRGQY 459 (722)
Q Consensus 431 l~~Al~l~~~~~d~~~~~~a~i~~llG~~ 459 (722)
+.-.-+- ..|.....+.+.+.|++|..
T Consensus 92 ~~~l~~~--~~ps~~EL~V~~~~YilGl~ 118 (204)
T COG2178 92 YSILKDG--RLPSPEELGVPPIAYILGLA 118 (204)
T ss_pred HHHHhcC--CCCCHHHcCCCHHHHHHHHH
Confidence 5544443 23433223455666777776
No 298
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=56.39 E-value=2.6e+02 Score=29.33 Aligned_cols=134 Identities=16% Similarity=0.106 Sum_probs=78.3
Q ss_pred hCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 004943 421 RSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHS----VGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVS 496 (722)
Q Consensus 421 ~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~a----lG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v 496 (722)
..++.+|.+.+..+.+ .+.+...+.+|..+.. ..++.+|..+|..|...-.... +.+..++|..
T Consensus 90 ~~~~~~A~~~~~~~a~----------~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a--~~~~~~l~~~ 157 (292)
T COG0790 90 SRDKTKAADWYRCAAA----------DGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA--ALAMYRLGLA 157 (292)
T ss_pred cccHHHHHHHHHHHhh----------cccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH--HHHHHHHHHH
Confidence 3345666666663333 2334456667776555 3389999999987765422221 6667888888
Q ss_pred HHhcCC-----hhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHhcCCh
Q 004943 497 YFCIGD-----AESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMR----QQDFQEARNRLAKGLQIAHNHMGNL 567 (722)
Q Consensus 497 ~l~~G~-----~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~----~G~~~eAk~~L~qAL~la~~~~gd~ 567 (722)
|.. |. ......++......+.. . -..+.+.+|..|.. .-++.+|...|.+|- +.|+
T Consensus 158 ~~~-g~~~~~~~~~~~~A~~~~~~aa~~----~----~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa-----~~g~- 222 (292)
T COG0790 158 YLS-GLQALAVAYDDKKALYLYRKAAEL----G----NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAA-----EQGD- 222 (292)
T ss_pred HHc-ChhhhcccHHHHhHHHHHHHHHHh----c----CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHH-----HCCC-
Confidence 877 42 11123444443333221 1 12466777776654 347889999999882 3556
Q ss_pred HHHHHHHHHHHHHHHhCC
Q 004943 568 QLVSQYLTILGNLALALH 585 (722)
Q Consensus 568 ~l~a~~L~~LG~~~~a~g 585 (722)
......+| ++...|
T Consensus 223 ---~~a~~~~~-~~~~~g 236 (292)
T COG0790 223 ---GAACYNLG-LMYLNG 236 (292)
T ss_pred ---HHHHHHHH-HHHhcC
Confidence 45666777 555555
No 299
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=56.03 E-value=31 Score=27.51 Aligned_cols=35 Identities=17% Similarity=0.164 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHH
Q 004943 532 LHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQL 569 (722)
Q Consensus 532 al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l 569 (722)
+++-++..+.+.|+|.+|+++....|++ +=.|++.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~---eP~N~Qa 37 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI---EPDNRQA 37 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH---TTS-HHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh---CCCcHHH
Confidence 4566777789999999999999999999 3556554
No 300
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=55.32 E-value=1.7e+02 Score=30.88 Aligned_cols=47 Identities=19% Similarity=0.337 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 004943 426 EAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYV 474 (722)
Q Consensus 426 eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~ 474 (722)
+=.+.+.+|+.|. ..+.. ..+.+.+|..+|.++...|++.+|..||.
T Consensus 68 ~r~~fi~~ai~WS-~~~~~-~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 68 ERKKFIKAAIKWS-KFGSY-KFGDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp THHHHHHHHHHHH-HTSS--TT--HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred hHHHHHHHHHHHH-ccCCC-CCCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 4566788888888 44331 14678999999999999999999999993
No 301
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=55.23 E-value=2e+02 Score=32.77 Aligned_cols=125 Identities=15% Similarity=0.056 Sum_probs=81.9
Q ss_pred CcccccCcchhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHH
Q 004943 332 MDGEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFL 411 (722)
Q Consensus 332 ~~~~WLpk~~l~aLvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lL 411 (722)
.+|..+|+-|=+.=|-+=-+..-..++.|.-|.-.+..||+++.+ -..++.+-. ++++ -| +++ .--+-
T Consensus 164 ~~~s~~PqiDkwl~vAL~das~~yrqk~ya~Aa~rF~taLelcsk-g~a~~k~~~-~~~~----di--~~v----aSfIe 231 (569)
T PF15015_consen 164 PNFSFLPQIDKWLQVALKDASSCYRQKKYAVAAGRFRTALELCSK-GAALSKPFK-ASAE----DI--SSV----ASFIE 231 (569)
T ss_pred CCcccChhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhh-hhhccCCCC-CChh----hH--HHH----HHHHH
Confidence 458889988888777777776667778889999999999999776 233333211 1111 11 112 22233
Q ss_pred HhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004943 412 ENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEA 476 (722)
Q Consensus 412 e~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~A 476 (722)
..|+.||+..++.+.|+.+..+++.+. |.-+.. |-..+.+-..+.+|.+|.+-|--|
T Consensus 232 tklv~CYL~~rkpdlALnh~hrsI~ln---P~~frn-----HLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 232 TKLVTCYLRMRKPDLALNHSHRSINLN---PSYFRN-----HLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred HHHHHhhhhcCCCchHHHHHhhhhhcC---cchhhH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457999999999999999988888753 332222 333445556677888887766444
No 302
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=55.13 E-value=37 Score=34.67 Aligned_cols=58 Identities=19% Similarity=0.291 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHH
Q 004943 529 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQA 590 (722)
Q Consensus 529 ~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA 590 (722)
-+...+.+|..|. .-+++.|+.+|.++|++.. -++ ..-..++..|+.++...|++++|
T Consensus 140 t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~--~~~-~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 140 TAELQYALATYYT-KRDPEKTIQLLLRALELSN--PDD-NFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcC--CCC-CCCHHHHHHHHHHHHHhcchhhh
Confidence 3567777887765 6789999999999999964 332 55567999999999999999887
No 303
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=54.63 E-value=99 Score=32.95 Aligned_cols=92 Identities=13% Similarity=0.068 Sum_probs=52.7
Q ss_pred HHHHHh-hCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchh-HHHHHHHH
Q 004943 415 VAVELT-RSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS-MQAMCHAY 492 (722)
Q Consensus 415 g~~~l~-~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~-~~A~alln 492 (722)
+.+... .++...|.+.|+.++..|-..++. .+.|+ .+....|+.+.|..+|+.++....... ...+....
T Consensus 42 A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~------~~~Y~--~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~ 113 (280)
T PF05843_consen 42 ALMEYYCNKDPKRARKIFERGLKKFPSDPDF------WLEYL--DFLIKLNDINNARALFERAISSLPKEKQSKKIWKKF 113 (280)
T ss_dssp HHHHHHTCS-HHHHHHHHHHHHHHHTT-HHH------HHHHH--HHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHCCCCHHH------HHHHH--HHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 566555 566667999999999887665553 22333 455678999999999999886544433 23333222
Q ss_pred HHHHHHhcCChhHHHHHHHHhcc
Q 004943 493 AAVSYFCIGDAESSSQAIDLIGP 515 (722)
Q Consensus 493 la~v~l~~G~~e~a~~aL~l~~~ 515 (722)
+ ..-...|+.+.......+...
T Consensus 114 i-~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 114 I-EFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp H-HHHHHHS-HHHHHHHHHHHHH
T ss_pred H-HHHHHcCCHHHHHHHHHHHHH
Confidence 2 222333665554444444333
No 304
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=54.60 E-value=2.1e+02 Score=30.81 Aligned_cols=209 Identities=11% Similarity=0.050 Sum_probs=111.8
Q ss_pred HhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHH---HHHHHHH
Q 004943 419 LTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAM---CHAYAAV 495 (722)
Q Consensus 419 l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~---allnla~ 495 (722)
+...++.+|+..|...+++--+-++. ++.++ -..--+...+|+|++-...|.+-|.-.++-..+.+ +.++ -+
T Consensus 38 l~e~~p~~Al~sF~kVlelEgEKgeW--GFKAL--KQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~-Il 112 (440)
T KOG1464|consen 38 LKEDEPKEALSSFQKVLELEGEKGEW--GFKAL--KQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINS-IL 112 (440)
T ss_pred ccccCHHHHHHHHHHHHhcccccchh--HHHHH--HHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHH-HH
Confidence 34569999999999999987666664 22222 22233456677777777777665544333221111 1111 11
Q ss_pred HHHhcCC--------hhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC-
Q 004943 496 SYFCIGD--------AESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGN- 566 (722)
Q Consensus 496 v~l~~G~--------~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd- 566 (722)
-|+.... ++....||.-+... + ++.+ ...-+|.+++..|+|..-...+.+--+....+.|.
T Consensus 113 DyiStS~~m~LLQ~FYeTTL~ALkdAKNe------R--LWFK--TNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGed 182 (440)
T KOG1464|consen 113 DYISTSKNMDLLQEFYETTLDALKDAKNE------R--LWFK--TNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGED 182 (440)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHhhhcc------e--eeee--ccchHhhhheeHHHHHHHHHHHHHHHHHhccccCch
Confidence 1222111 11122233222110 1 1112 23347788888888777655555544443334443
Q ss_pred -----hHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhH-hHHHHHHHHH
Q 004943 567 -----LQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNE-MENDEYRRKK 640 (722)
Q Consensus 567 -----~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A-~e~~~~~~~~ 640 (722)
.++.-.+-..+ .+|-.+.+...--..+++|+++-..++.|....-..--=|.+|.+.|+.++| -+.|+..++.
T Consensus 183 D~kKGtQLLEiYAlEI-QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNY 261 (440)
T KOG1464|consen 183 DQKKGTQLLEIYALEI-QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNY 261 (440)
T ss_pred hhhccchhhhhHhhHh-hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcc
Confidence 12222222222 5688888888888899999999999999866433333334556666665444 3444444444
Q ss_pred HHH
Q 004943 641 LDE 643 (722)
Q Consensus 641 ~~~ 643 (722)
-++
T Consensus 262 DEs 264 (440)
T KOG1464|consen 262 DES 264 (440)
T ss_pred ccc
Confidence 333
No 305
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=54.32 E-value=1.9e+02 Score=30.86 Aligned_cols=134 Identities=12% Similarity=0.134 Sum_probs=72.3
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH-HHhcCChhHHHHHHHHhcchhcccccccChHHHHHH
Q 004943 454 MLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVS-YFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASL 532 (722)
Q Consensus 454 ~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v-~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~a 532 (722)
..........+..++|-..|.+|++. ....-..+...|.+ |.+.++++.+...+++....+... ...
T Consensus 5 i~~m~~~~r~~g~~~aR~vF~~a~~~---~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~---------~~~ 72 (280)
T PF05843_consen 5 IQYMRFMRRTEGIEAARKVFKRARKD---KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD---------PDF 72 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCC---CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT----------HHH
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC---------HHH
Confidence 33345555566688888888877621 11111223444666 444455555777777655543322 123
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Q 004943 533 HFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKK 603 (722)
Q Consensus 533 l~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkk 603 (722)
+..+.......|+.+.|+..|++++.. +......-....-.-.....-|+.+...+..+...++...
T Consensus 73 ~~~Y~~~l~~~~d~~~aR~lfer~i~~----l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 73 WLEYLDFLIKLNDINNARALFERAISS----LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHCCT----SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHh----cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 344444455788899999999988765 3332211223333334455557777777777777666544
No 306
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=51.87 E-value=3.3e+02 Score=29.10 Aligned_cols=224 Identities=13% Similarity=0.053 Sum_probs=0.0
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 004943 415 VAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAA 494 (722)
Q Consensus 415 g~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla 494 (722)
++..+..++++++...+.++...+...-...........|-.=...+.+..++++.......... ......+...---
T Consensus 36 al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~lq~L~Elee~~~~~~~~~~~--~~~~~~l~~~W~~ 113 (352)
T PF02259_consen 36 ALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKLQQLVELEEIIELKSNLSQN--PQDLKSLLKRWRS 113 (352)
T ss_pred HHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHhhccc--HHHHHHHHHHHHH
Q ss_pred HHHHhcCChhHHHHHHHHhcchhcccccccC----hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHH
Q 004943 495 VSYFCIGDAESSSQAIDLIGPVYQMKDTING----VREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLV 570 (722)
Q Consensus 495 ~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~----~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~ 570 (722)
..-...++++.-...+..-.-+ .. ....+..+..++.+...+|.++.|...+.++.+. ...+....
T Consensus 114 Rl~~~~~~~~~~~~il~~R~~~-------l~~~~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~---~~~~~~~~ 183 (352)
T PF02259_consen 114 RLPNMQDDFSVWEPILSLRRLV-------LSLILLPEELAETWLKFAKLARKAGNFQLALSALNRLFQL---NPSSESLL 183 (352)
T ss_pred HHHHhccchHHHHHHHHHHHHH-------HhcccchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhcc---CCcccCCC
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHH-HHH---------------------------HcCChhHHHHHHHHHHHHHH
Q 004943 571 SQYLTILGNLALALHDTVQAREILRSSLT-LAK---------------------------KLYDIPTQIWALSVLTALYQ 622 (722)
Q Consensus 571 a~~L~~LG~~~~a~g~~~qA~~~l~~Al~-lAk---------------------------ki~D~~~q~~al~~L~~l~~ 622 (722)
..+...-+.+.+..|+..+|...++..+. ... ...+......+...+|+-..
T Consensus 184 ~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~ 263 (352)
T PF02259_consen 184 PRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLD 263 (352)
T ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHH
Q ss_pred Hc------CCchhHhHHHHHHHHHHHHHhHHHHH
Q 004943 623 QL------GDRGNEMENDEYRRKKLDELQKRLAD 650 (722)
Q Consensus 623 ~~------Gd~~~A~e~~~~~~~~~~~l~~~~~~ 650 (722)
.. ++.+.+...|..+.+.-.........
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~ 297 (352)
T PF02259_consen 264 ELYSKLSSESSDEILKYYKEATKLDPSWEKAWHS 297 (352)
T ss_pred hhccccccccHHHHHHHHHHHHHhChhHHHHHHH
No 307
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=51.67 E-value=6.7e+02 Score=32.65 Aligned_cols=206 Identities=11% Similarity=-0.046 Sum_probs=115.5
Q ss_pred hhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchh---h--hhHHHHHHHHHHHHHH-------------------------
Q 004943 413 NKVAVELTRSGFVEAQEALVQMKNWFIRFPTIL---Q--ACESMIEMLRGQYAHS------------------------- 462 (722)
Q Consensus 413 ~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~---~--~~~a~i~~llG~~~~a------------------------- 462 (722)
.+|-.++-.|+|.+|+++|.+|.++.+..+|.+ . -+.+.+..+.+..-+.
T Consensus 247 ~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~~~~s~~~~ 326 (1185)
T PF08626_consen 247 VLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSSTSSSSPRNS 326 (1185)
T ss_pred hhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCccCccCcccC
Confidence 369999999999999999999999999999821 1 1222223232222110
Q ss_pred -------------------------------hCCHHHHHHHHHHHHHhhcchh---HHHHHHHHHHHHHHhcC-------
Q 004943 463 -------------------------------VGCYSEAAFHYVEAAKITESKS---MQAMCHAYAAVSYFCIG------- 501 (722)
Q Consensus 463 -------------------------------lG~~~~Al~~f~~AL~l~~~~~---~~A~allnla~v~l~~G------- 501 (722)
...+++|+.+|..+.....+.. ...-|.+..+.......
T Consensus 327 ~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~~~~~l~~ 406 (1185)
T PF08626_consen 327 SSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQHLSDNLDH 406 (1185)
T ss_pred CccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhhcccchhh
Confidence 0145678888876654433332 22333344444433333
Q ss_pred -------------ChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC-h
Q 004943 502 -------------DAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGN-L 567 (722)
Q Consensus 502 -------------~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd-~ 567 (722)
...+....+..+-+. ... ..+..+++..+-.++.+|-..|-.-++.=++|+++..-.....+ +
T Consensus 407 iV~~~~~~~~~~~~~~eI~~~l~~~~~~--~l~-~l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~~~~l~~~~ 483 (1185)
T PF08626_consen 407 IVKRPLTPTPNISSRSEIAEFLFKAFPL--QLK-DLSVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQLVPGLIHWH 483 (1185)
T ss_pred hhccccccccCCCCHHHHHHHHHHhhhh--hhh-hCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhccccCCcc
Confidence 122222222222121 111 13455778889999999999999989888888888875322221 1
Q ss_pred HHHHHHHHHHHHHHHhCC----------------ChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 004943 568 QLVSQYLTILGNLALALH----------------DTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALY 621 (722)
Q Consensus 568 ~l~a~~L~~LG~~~~a~g----------------~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~ 621 (722)
+.....+..+...|--.. -+.--.+.++..+..|++++|....+.-...|-+.|
T Consensus 484 ~s~~~lL~~~~~~Ygi~~~~~~~~~~~~~~~~~~W~~LQi~vL~~~I~~ae~l~D~~~~~~~~~~LL~~~ 553 (1185)
T PF08626_consen 484 QSYRSLLEELCKGYGISLDPESSSEDSSKGSQSNWPSLQIDVLKECINIAEALGDFAGVLRFSSLLLRTY 553 (1185)
T ss_pred hHHHHHHHHHhccCcccCCccccccccccccccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 111123333333332211 122235778888888888888876555555444443
No 308
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=49.95 E-value=1.7e+02 Score=29.49 Aligned_cols=61 Identities=18% Similarity=0.064 Sum_probs=32.4
Q ss_pred HhhHHHHHhhCCH---HHHHHHHHHHHHHHHh----CCchhhhhHHHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Q 004943 412 ENKVAVELTRSGF---VEAQEALVQMKNWFIR----FPTILQACESMIEMLRGQYAHSVG----CYSEAAFHYVEAA 477 (722)
Q Consensus 412 e~Lg~~~l~~g~~---~eA~~~l~~Al~l~~~----~~d~~~~~~a~i~~llG~~~~alG----~~~~Al~~f~~AL 477 (722)
.+-|.+.+..+++ .++.+.+++|+.-+++ .|+. ..+++.+|..+.+.| +..+|..+|.+|.
T Consensus 29 ~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~-----hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~ 100 (186)
T PF06552_consen 29 TNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNK-----HDALWCLGNAYTSLAFLTPDTAEAEEYFEKAT 100 (186)
T ss_dssp HHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCch-----HHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 3445555444444 4677777777776666 3553 234555665555554 3345555554443
No 309
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=49.71 E-value=5.6e+02 Score=31.21 Aligned_cols=254 Identities=16% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCCCCcccch-hhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHHHHHHHHHH-----HHHhCC
Q 004943 369 SGMQTIQDALLKLGITDGVREVD-LQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKN-----WFIRFP 442 (722)
Q Consensus 369 ~AL~~i~~~~~~lg~~~g~~e~~-l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~~l~~Al~-----l~~~~~ 442 (722)
++++=+...+++.|..+...-.+ -+|.++| ..++-..+..-+++-|...|-++-+ +..+++
T Consensus 665 kslrD~~~Lve~vgledA~qfiEdnPHprLW-------------rllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~ 731 (1189)
T KOG2041|consen 665 KSLRDVMNLVEAVGLEDAIQFIEDNPHPRLW-------------RLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLR 731 (1189)
T ss_pred hhhhhHHHHHHHhchHHHHHHHhcCCchHHH-------------HHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhh
Q ss_pred chhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhccccc
Q 004943 443 TILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDT 522 (722)
Q Consensus 443 d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~ 522 (722)
..... ..-.+.+.-.-|++++|+..|-.+=+. .-.-.++...||+ -+.+.+++.-...-++
T Consensus 732 ~i~s~-----~~q~aei~~~~g~feeaek~yld~drr-----------DLAielr~klgDw---frV~qL~r~g~~d~dD 792 (1189)
T KOG2041|consen 732 TIHSK-----EQQRAEISAFYGEFEEAEKLYLDADRR-----------DLAIELRKKLGDW---FRVYQLIRNGGSDDDD 792 (1189)
T ss_pred hhhhH-----HHHhHhHhhhhcchhHhhhhhhccchh-----------hhhHHHHHhhhhH---HHHHHHHHccCCCcch
Q ss_pred ccChHHHHHHHHHHHHHHHhcCCHHHHHHHHH---------HHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHH
Q 004943 523 INGVREEASLHFAYGLLLMRQQDFQEARNRLA---------KGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREI 593 (722)
Q Consensus 523 ~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~---------qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~ 593 (722)
.+ +..++.++|..+...-+.++|..+|. ++|=.-. ..|+....+..|-.=....-..++-=-...|
T Consensus 793 ~~----~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le-~f~~LE~la~~Lpe~s~llp~~a~mf~svGM 867 (1189)
T KOG2041|consen 793 EG----KEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLE-LFGELEVLARTLPEDSELLPVMADMFTSVGM 867 (1189)
T ss_pred HH----HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHH-hhhhHHHHHHhcCcccchHHHHHHHHHhhch
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHHHHHHHhHHHHHhh-hchhhHHHHhhhc
Q 004943 594 LRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDELQKRLADAY-SSIHHIELISKVK 665 (722)
Q Consensus 594 l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~l~~~~~~a~-~~~~h~~l~~~~~ 665 (722)
..+|++..=+-+++..-+.+-+.|..=-.+ ..-+....+.-.+.|.++++.-. +-.-|.+-|++.|
T Consensus 868 C~qAV~a~Lr~s~pkaAv~tCv~LnQW~~a------velaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~R 934 (1189)
T KOG2041|consen 868 CDQAVEAYLRRSLPKAAVHTCVELNQWGEA------VELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDR 934 (1189)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHH------HHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhh
No 310
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=48.63 E-value=4.1e+02 Score=30.56 Aligned_cols=146 Identities=15% Similarity=0.142 Sum_probs=79.9
Q ss_pred HHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHH-HHHHHHHH
Q 004943 416 AVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQ-AMCHAYAA 494 (722)
Q Consensus 416 ~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~-A~allnla 494 (722)
-....++|++++.+.++ +-+++...|. .....+..|.+..|..+.|+..- +|...+ .+|
T Consensus 269 k~av~~~d~~~v~~~i~-~~~ll~~i~~-------~~~~~i~~fL~~~G~~e~AL~~~-------~D~~~rFeLA----- 328 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIA-ASNLLPNIPK-------DQGQSIARFLEKKGYPELALQFV-------TDPDHRFELA----- 328 (443)
T ss_dssp HHHHHTT-HHH-----H-HHHTGGG--H-------HHHHHHHHHHHHTT-HHHHHHHS-------S-HHHHHHHH-----
T ss_pred HHHHHcCChhhhhhhhh-hhhhcccCCh-------hHHHHHHHHHHHCCCHHHHHhhc-------CChHHHhHHH-----
Confidence 34567899999887762 2233333443 22566777889999999888554 443322 122
Q ss_pred HHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 004943 495 VSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYL 574 (722)
Q Consensus 495 ~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L 574 (722)
+..|+ +..|++.+..+ . .-..+..+|...+.+|+++-|..+|+++=...
T Consensus 329 ---l~lg~---L~~A~~~a~~~-------~----~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~-------------- 377 (443)
T PF04053_consen 329 ---LQLGN---LDIALEIAKEL-------D----DPEKWKQLGDEALRQGNIELAEECYQKAKDFS-------------- 377 (443)
T ss_dssp ---HHCT----HHHHHHHCCCC-------S----THHHHHHHHHHHHHTTBHHHHHHHHHHCT-HH--------------
T ss_pred ---HhcCC---HHHHHHHHHhc-------C----cHHHHHHHHHHHHHcCCHHHHHHHHHhhcCcc--------------
Confidence 22344 34555555554 1 11368899999999999999999998764331
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 004943 575 TILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVL 617 (722)
Q Consensus 575 ~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L 617 (722)
.|.-+|...|+.+.=.++ ..+|.+.+|......+...+
T Consensus 378 -~L~lLy~~~g~~~~L~kl----~~~a~~~~~~n~af~~~~~l 415 (443)
T PF04053_consen 378 -GLLLLYSSTGDREKLSKL----AKIAEERGDINIAFQAALLL 415 (443)
T ss_dssp -HHHHHHHHCT-HHHHHHH----HHHHHHTT-HHHHHHHHHHH
T ss_pred -ccHHHHHHhCCHHHHHHH----HHHHHHccCHHHHHHHHHHc
Confidence 334457777876443333 45677777765544444444
No 311
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=47.83 E-value=79 Score=33.37 Aligned_cols=63 Identities=14% Similarity=0.064 Sum_probs=48.6
Q ss_pred HhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcc
Q 004943 412 ENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES 482 (722)
Q Consensus 412 e~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~ 482 (722)
.|-+.|++...+|+.+..--.+++++. .+..-.|+.+|........|++|....+.|..+.+.
T Consensus 48 tnralchlk~~~~~~v~~dcrralql~--------~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~ 110 (284)
T KOG4642|consen 48 TNRALCHLKLKHWEPVEEDCRRALQLD--------PNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLRE 110 (284)
T ss_pred hhHHHHHHHhhhhhhhhhhHHHHHhcC--------hHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhc
Confidence 445666666678888888877777753 345677999999999999999999999888766543
No 312
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=47.15 E-value=17 Score=25.91 Aligned_cols=21 Identities=29% Similarity=0.275 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHH
Q 004943 530 ASLHFAYGLLLMRQQDFQEAR 550 (722)
Q Consensus 530 A~al~~lG~~~~~~G~~~eAk 550 (722)
+.+++.+|.++...|++++|+
T Consensus 13 ~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhhc
Confidence 368999999999999999986
No 313
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=45.97 E-value=1.1e+02 Score=38.53 Aligned_cols=97 Identities=13% Similarity=0.064 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCC-CCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHH--HhhCCHHHHHHHHHHHHHHH
Q 004943 362 ECMQRIQSGMQTIQDALLKLGIT-DGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVE--LTRSGFVEAQEALVQMKNWF 438 (722)
Q Consensus 362 kA~k~~~~AL~~i~~~~~~lg~~-~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~--l~~g~~~eA~~~l~~Al~l~ 438 (722)
=|+|.|+.|+.. .++.+.+ +|-.| + | ++++.-++..+. -..|+. +.+.+|+.-|
T Consensus 486 ~~~~~~~~~~~~----~~~~~~~~~~~~~-~-----------~---~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 542 (932)
T PRK13184 486 LAEKLYDQALIF----YRRIRESFPGRKE-G-----------Y---EAQFRLGITLLEKASEQGDP----RDFTQALSEF 542 (932)
T ss_pred HhhHHHHHHHHH----HHHHhhcCCCccc-c-----------h---HHHHHhhHHHHHHHHhcCCh----HHHHHHHHHH
Confidence 578999999998 5555544 33111 1 1 333322222222 234444 7888899999
Q ss_pred HhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcch
Q 004943 439 IRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK 483 (722)
Q Consensus 439 ~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~ 483 (722)
..+.+. .+.++=+-.-+++|+.+|+|++=..-|.-|++.....
T Consensus 543 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (932)
T PRK13184 543 SYLHGG--VGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQH 585 (932)
T ss_pred HHhcCC--CCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCC
Confidence 887665 3445556667888999999999988888888766543
No 314
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=44.47 E-value=1.4e+02 Score=31.32 Aligned_cols=102 Identities=22% Similarity=0.168 Sum_probs=60.5
Q ss_pred HHhCCHHHHHHHHHHHHHhhcch------h---HHHHHHHHHHHHHHhcCCh-hH-HHHHHHHhcchhcccccccChHHH
Q 004943 461 HSVGCYSEAAFHYVEAAKITESK------S---MQAMCHAYAAVSYFCIGDA-ES-SSQAIDLIGPVYQMKDTINGVREE 529 (722)
Q Consensus 461 ~alG~~~~Al~~f~~AL~l~~~~------~---~~A~allnla~v~l~~G~~-e~-a~~aL~l~~~l~r~~~~~~~~~~~ 529 (722)
.-.|+|+.|++++.-|++.--.. . -.+--...-+..-...|.+ +. +.+.+..+..-.+.++ . .+
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd----~-vr 168 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPD----E-VR 168 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCCh----H-HH
Confidence 46799999999999888642111 1 1111122233444555664 22 4444444433223222 1 36
Q ss_pred HHHHHHHHHHHH---------hcCCHHHHHHHHHHHHHHHHHhcCChH
Q 004943 530 ASLHFAYGLLLM---------RQQDFQEARNRLAKGLQIAHNHMGNLQ 568 (722)
Q Consensus 530 A~al~~lG~~~~---------~~G~~~eAk~~L~qAL~la~~~~gd~~ 568 (722)
|-.+...|..+. ..+++.+|..+|++|+++ +...|-..
T Consensus 169 AKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l-~~k~GVK~ 215 (230)
T PHA02537 169 AKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQL-NDKCGVKK 215 (230)
T ss_pred HHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHh-CCCCChHH
Confidence 777888888874 456788999999999999 44566533
No 315
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=42.68 E-value=2.6e+02 Score=33.00 Aligned_cols=93 Identities=14% Similarity=0.031 Sum_probs=63.3
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Q 004943 543 QQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQ 622 (722)
Q Consensus 543 ~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~ 622 (722)
+..-..+...|.+|+..++.-.+|++. .=++.+|.-+.+.+++.+|...+-.|-...++-.-
T Consensus 292 t~~r~~~~~l~~~AI~sa~~~Y~n~Hv--YPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~YnY---------------- 353 (618)
T PF05053_consen 292 TPGRPTPLELFNEAISSARTYYNNHHV--YPYTYLGGYYYRHKRYREALRSWAEAADVIRKYNY---------------- 353 (618)
T ss_dssp -TTS--HHHHHHHHHHHHHHHCTT--S--HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTSB-----------------
T ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcc--ccceehhhHHHHHHHHHHHHHHHHHHHHHHHHccc----------------
Confidence 344556789999999999988888777 66788899999999999999877776444332211
Q ss_pred HcCCchhHhHHHHHHHHHHHHHhHHHHHhhhchhh
Q 004943 623 QLGDRGNEMENDEYRRKKLDELQKRLADAYSSIHH 657 (722)
Q Consensus 623 ~~Gd~~~A~e~~~~~~~~~~~l~~~~~~a~~~~~h 657 (722)
..+=.|.|.....++-+|++.+...-++.++
T Consensus 354 ----~reDeEiYKEfleIAneLiP~~lk~~~~~~~ 384 (618)
T PF05053_consen 354 ----SREDEEIYKEFLEIANELIPNVLKSESSGHS 384 (618)
T ss_dssp -----GGGHHHHHHHHHHHHTHHHHHHHHHHCHHH
T ss_pred ----CccHHHHHHHHHHHHHHHHHHHHHhhhcccC
Confidence 1223566777777888888888877766554
No 316
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=41.40 E-value=78 Score=24.24 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=22.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 004943 534 FAYGLLLMRQQDFQEARNRLAKGLQ 558 (722)
Q Consensus 534 ~~lG~~~~~~G~~~eAk~~L~qAL~ 558 (722)
+.++.+|...|+++.|+..|.+.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5688899999999999999999983
No 317
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=38.58 E-value=1.5e+02 Score=32.86 Aligned_cols=71 Identities=17% Similarity=0.139 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 004943 526 VREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLT 599 (722)
Q Consensus 526 ~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~ 599 (722)
.++.|.-+---|.-|+..-+|-.|...|.++|+- ..+|+-+.+..+++-+-..+..|++.+|.+=+..|+.
T Consensus 77 p~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~---kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~ 147 (390)
T KOG0551|consen 77 PHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKK---KCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK 147 (390)
T ss_pred hHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhh---cCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456667777788888888888888888888776 3777777777777777777777888877766665554
No 318
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=38.45 E-value=6.5e+02 Score=28.73 Aligned_cols=213 Identities=11% Similarity=0.078 Sum_probs=122.0
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcC-CCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhh
Q 004943 343 YALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLG-ITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTR 421 (722)
Q Consensus 343 ~aLvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg-~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~ 421 (722)
-+.+|+.-.......|+..+-..++..=++. ..++ +..| ++.+++-|-..++.-
T Consensus 168 ~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrt-----AtLrhd~e~--------------------qavLiN~LLr~yL~n 222 (493)
T KOG2581|consen 168 AAKLYFYLYLSYELEGRLADIRSFLHALLRT-----ATLRHDEEG--------------------QAVLINLLLRNYLHN 222 (493)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHH-----hhhcCcchh--------------------HHHHHHHHHHHHhhh
Confidence 3455555555666667766666666655555 3355 4455 677777777888888
Q ss_pred CCHHHHHHHHHHHHHHHHhCCchhh-hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcch---hHHHHHHHHHHHHH
Q 004943 422 SGFVEAQEALVQMKNWFIRFPTILQ-ACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK---SMQAMCHAYAAVSY 497 (722)
Q Consensus 422 g~~~eA~~~l~~Al~l~~~~~d~~~-~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~---~~~A~allnla~v~ 497 (722)
+-|+.|.+....+. +|+... .-.+.-.|-+|.+-.-.++|+.|..+|.+|++.+... |-+-.+...+-.+-
T Consensus 223 ~lydqa~~lvsK~~-----~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~v~k~~ivv~ 297 (493)
T KOG2581|consen 223 KLYDQADKLVSKSV-----YPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQVNKLMIVVE 297 (493)
T ss_pred HHHHHHHHHhhccc-----CccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHH
Confidence 88888888755432 344211 1344556778999999999999999999999887643 33334444444556
Q ss_pred HhcCC-hhH-------HHHHHHH----hcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 004943 498 FCIGD-AES-------SSQAIDL----IGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMG 565 (722)
Q Consensus 498 l~~G~-~e~-------a~~aL~l----~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~g 565 (722)
+-+|+ ||. .+++|.- ...+ + .+++..=...+--.+......|-|.-+.+.=+..++.+-+.++
T Consensus 298 ll~geiPers~F~Qp~~~ksL~~Yf~Lt~AV-r----~gdlkkF~~~leq~k~~f~~D~ty~LivRLR~NVIkTgIR~IS 372 (493)
T KOG2581|consen 298 LLLGEIPERSVFRQPGMRKSLRPYFKLTQAV-R----LGDLKKFNETLEQFKDKFQADGTYTLIVRLRHNVIKTGIRKIS 372 (493)
T ss_pred HHcCCCcchhhhcCccHHHHHHHHHHHHHHH-H----HhhHHHHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhee
Confidence 66788 432 3333321 1111 1 0112111234444555556677777777777766666443332
Q ss_pred ChHHHHHHHHHHHHHHHhCC-ChHH-HHHHH
Q 004943 566 NLQLVSQYLTILGNLALALH-DTVQ-AREIL 594 (722)
Q Consensus 566 d~~l~a~~L~~LG~~~~a~g-~~~q-A~~~l 594 (722)
= +.+...+-.+....+ +.++ |+=++
T Consensus 373 l----sYSRISl~DIA~kL~l~Seed~EyiV 399 (493)
T KOG2581|consen 373 L----SYSRISLQDIAKKLGLNSEEDAEYIV 399 (493)
T ss_pred e----eeeeccHHHHHHHhcCCCchhHHHHH
Confidence 2 233334444444444 3333 55444
No 319
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.68 E-value=4.4e+02 Score=30.04 Aligned_cols=127 Identities=12% Similarity=0.004 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHhCCc-hhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChh
Q 004943 426 EAQEALVQMKNWFIRFPT-ILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAE 504 (722)
Q Consensus 426 eA~~~l~~Al~l~~~~~d-~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e 504 (722)
.|....++...-.....+ ...-..-..+.-+|..++.-|+++.|+..|..+-.-+++.........|+-.|-+..|++.
T Consensus 125 ~a~~~le~L~~eLk~yK~n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~ 204 (466)
T KOG0686|consen 125 KAVLKLEKLDNELKSYKDNLIKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWG 204 (466)
T ss_pred HHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchh
Confidence 333444444443444333 2112234678889999999999999999997766666666666777778777778888865
Q ss_pred H----HHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004943 505 S----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGL 557 (722)
Q Consensus 505 ~----a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL 557 (722)
+ ..+|..-....+. ....... +..++ .|.+++..++|..|..++-.+-
T Consensus 205 hv~sy~~~A~st~~~~~~-~~q~v~~--kl~C~--agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 205 HVLSYISKAESTPDANEN-LAQEVPA--KLKCA--AGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred hhhhHHHHHHhCchhhhh-HHHhcCc--chHHH--HHHHHHHHHHHHHHHHHHHhCC
Confidence 4 2222221100000 0000111 22232 4566667778988888876653
No 320
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.48 E-value=1.4e+02 Score=33.13 Aligned_cols=89 Identities=15% Similarity=0.164 Sum_probs=47.5
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhccc-------------------ccc-----cCh
Q 004943 471 FHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMK-------------------DTI-----NGV 526 (722)
Q Consensus 471 ~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~-------------------~~~-----~~~ 526 (722)
..|+++.....+.....+-.++-|.++...|++......|+.+..-++.. .++ +.+
T Consensus 42 ~~y~Q~~q~~kk~~~~il~~L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g~~ 121 (449)
T COG3014 42 KAYEQSKQFTKKKKNALLWDLQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGGNI 121 (449)
T ss_pred hHHHHHHHhhhhhhHHHHHhhhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCchh
Confidence 44555555555555555555666777777777655333333332111111 000 333
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 004943 527 REEASLHFAYGLLLMRQQDFQEARNRLAKGLQI 559 (722)
Q Consensus 527 ~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~l 559 (722)
.+..-..+-.|.-|+..++++.|+-.+++|++-
T Consensus 122 YE~~~~n~YkaLNYm~~nD~~~ArVEfnRan~r 154 (449)
T COG3014 122 YEGVLINYYKALNYMLLNDSAKARVEFNRANER 154 (449)
T ss_pred HHHHHHHHHHHhhHHHhcchhhhHHHHHHHHHH
Confidence 344455556677777777777666555555543
No 321
>PF12854 PPR_1: PPR repeat
Probab=37.31 E-value=49 Score=23.43 Aligned_cols=23 Identities=17% Similarity=0.026 Sum_probs=20.3
Q ss_pred HhhHHHHHhhCCHHHHHHHHHHH
Q 004943 412 ENKVAVELTRSGFVEAQEALVQM 434 (722)
Q Consensus 412 e~Lg~~~l~~g~~~eA~~~l~~A 434 (722)
+-++..++..|+.++|.+.++++
T Consensus 11 ~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 11 NTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhC
Confidence 55799999999999999998875
No 322
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=36.61 E-value=1.4e+02 Score=28.94 Aligned_cols=70 Identities=9% Similarity=0.086 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhc-ccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 004943 485 MQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQ-MKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQI 559 (722)
Q Consensus 485 ~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r-~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~l 559 (722)
....+..|+|++..+..+.+...+-+.++..+++ .++. . +=.+++-++.-|.+.++|+.+++++..-|+.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~---~--rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPE---R--RRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcc---c--chhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 3445678888888886666667777777777765 3221 1 2234555666668999999999999998887
No 323
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=36.30 E-value=2e+02 Score=31.79 Aligned_cols=98 Identities=19% Similarity=0.162 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHH
Q 004943 453 EMLRGQYAHSVGCYSEAAFHYVEAAK-ITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEAS 531 (722)
Q Consensus 453 ~~llG~~~~alG~~~~Al~~f~~AL~-l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~ 531 (722)
+---|--+..--+|..|...|.++++ -+.++...+.++.|-|.+.+..|++.++..-...++.+ .+. -+-
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~--~P~-------h~K 154 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL--KPT-------HLK 154 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc--Ccc-------hhh
Confidence 34456667888899999999999986 46888899999999999988888887622222222222 111 122
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 004943 532 LHFAYGLLLMRQQDFQEARNRLAKGLQI 559 (722)
Q Consensus 532 al~~lG~~~~~~G~~~eAk~~L~qAL~l 559 (722)
+++.-+..++...++.+|.+-..+.|.+
T Consensus 155 a~~R~Akc~~eLe~~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 155 AYIRGAKCLLELERFAEAVNWCEEGLQI 182 (390)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhhhhhh
Confidence 4555566666777777777777777665
No 324
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=36.00 E-value=73 Score=27.62 Aligned_cols=40 Identities=13% Similarity=0.165 Sum_probs=0.0
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHHHHHHHHH
Q 004943 356 PKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMK 435 (722)
Q Consensus 356 ~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~~l~~Al 435 (722)
.+++|++|..+..+||+. +. .|++++|+.+|++++
T Consensus 1 ik~~~~~A~~~I~kaL~~-----------dE----------------------------------~g~~e~Al~~Y~~gi 35 (79)
T cd02679 1 IRGYYKQAFEEISKALRA-----------DE----------------------------------WGDKEQALAHYRKGL 35 (79)
T ss_pred CchHHHHHHHHHHHHhhh-----------hh----------------------------------cCCHHHHHHHHHHHH
Q ss_pred HHHHh
Q 004943 436 NWFIR 440 (722)
Q Consensus 436 ~l~~~ 440 (722)
....+
T Consensus 36 ~~l~e 40 (79)
T cd02679 36 RELEE 40 (79)
T ss_pred HHHHH
No 325
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=34.82 E-value=6.3e+02 Score=27.52 Aligned_cols=123 Identities=13% Similarity=-0.034 Sum_probs=74.3
Q ss_pred hHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 004943 414 KVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYA 493 (722)
Q Consensus 414 Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnl 493 (722)
.+.-....|++.+|...+.+++....+.++. .-.++.++..+|+.++|...+..--...++ .....+..-
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~--------~~~la~~~l~~g~~e~A~~iL~~lP~~~~~--~~~~~l~a~ 209 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAAPENSEA--------KLLLAECLLAAGDVEAAQAILAALPLQAQD--KAAHGLQAQ 209 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhCcccchH--------HHHHHHHHHHcCChHHHHHHHHhCcccchh--hHHHHHHHH
Confidence 3555677899999999999999977666553 445677888999999999999431111111 111110000
Q ss_pred HHHHHhcCC---hhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 004943 494 AVSYFCIGD---AESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQI 559 (722)
Q Consensus 494 a~v~l~~G~---~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~l 559 (722)
-..+.+..+ ...+.+.+. ..+++ . .+-+-+|..++..|++++|..+|-.-|+.
T Consensus 210 i~ll~qaa~~~~~~~l~~~~a------adPdd---~----~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 210 IELLEQAAATPEIQDLQRRLA------ADPDD---V----EAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHHHHHhcCCCHHHHHHHHH------hCCCC---H----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 011222222 222322222 12221 2 23456788889999999999999877776
No 326
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=34.67 E-value=2.5e+02 Score=31.56 Aligned_cols=107 Identities=16% Similarity=0.129 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCc
Q 004943 364 MQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPT 443 (722)
Q Consensus 364 ~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d 443 (722)
.+++++.=+.+...+...-.+++ ..+.++..| ++|+..-. +-.+|.+.++++.+...++.... ...||
T Consensus 143 ~d~l~~~sr~l~R~Fn~il~dR~---p~ln~skk~--g~y~iaNl-----L~~iY~Rl~~~~l~~n~lka~~~--vs~~D 210 (413)
T COG5600 143 QDNLSKISRLLTRMFNSILNDRS---PALNPSKKV--GLYYIANL-----LFQIYLRLGRFKLCENFLKASKE--VSMPD 210 (413)
T ss_pred HhhHHHHHHHHHHHHHHhcCCcC---ccCChhhHH--HHHHHHHH-----HHHHHHHhccHHHHHHHHHhccc--ccccc
Confidence 34444444554444555543332 225567777 66643322 46788999999888766655544 33455
Q ss_pred hhh---hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcc
Q 004943 444 ILQ---ACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES 482 (722)
Q Consensus 444 ~~~---~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~ 482 (722)
... ...-.-+|.+|.|+.-..++.+|-.++.+|.-....
T Consensus 211 i~~~~~sq~v~f~YYLG~~~l~~en~heA~~~L~~aFl~c~~ 252 (413)
T COG5600 211 ISEYQKSQVVVFHYYLGIYYLLNENFHEAFLHLNEAFLQCPW 252 (413)
T ss_pred cchhhhcceeehhhHHHHHHHHHHhHHHHHHHHHHHHHhChh
Confidence 321 122345899999999999999999999998765554
No 327
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=34.61 E-value=1.4e+02 Score=33.85 Aligned_cols=66 Identities=9% Similarity=-0.047 Sum_probs=53.6
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHhC----------CchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh
Q 004943 415 VAVELTRSGFVEAQEALVQMKNWFIRF----------PTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKIT 480 (722)
Q Consensus 415 g~~~l~~g~~~eA~~~l~~Al~l~~~~----------~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~ 480 (722)
+.-++.++.|+.|.-.|..++++|..- ++-.....+.+..-+-.+|..+++.+-|+.|-..++-+.
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~ln 258 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLN 258 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcC
Confidence 667788999999999999999998761 112234578899999999999999999999998876543
No 328
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=34.42 E-value=72 Score=36.13 Aligned_cols=62 Identities=13% Similarity=0.180 Sum_probs=46.8
Q ss_pred HhhHHHHHhhCCHHHHHHHHHHHHH----HHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 004943 412 ENKVAVELTRSGFVEAQEALVQMKN----WFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAA 477 (722)
Q Consensus 412 e~Lg~~~l~~g~~~eA~~~l~~Al~----l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL 477 (722)
-.|..+++-.|||..|++.++..-- ++...|. +.-.++|-.|-.++-+++|.+|.+.|...|
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~----~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPA----CHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcc----hheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888999999999998654321 2222222 334678999999999999999999998775
No 329
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=34.06 E-value=5.8e+02 Score=26.88 Aligned_cols=178 Identities=10% Similarity=0.035 Sum_probs=95.3
Q ss_pred hHHHHHhhCCHHHHHHHHHHHHHHHH--hCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh-cchhHH---H
Q 004943 414 KVAVELTRSGFVEAQEALVQMKNWFI--RFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKIT-ESKSMQ---A 487 (722)
Q Consensus 414 Lg~~~l~~g~~~eA~~~l~~Al~l~~--~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~-~~~~~~---A 487 (722)
++-+.-..+||+++.+.+.++.+++. .+..-.+ .-+-.-|--..|....+.+.... +..- ...+.. .
T Consensus 7 ~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EER------nLLSvayKn~i~~~R~s~R~i~s-ie~ke~~~~~~~~~~ 79 (244)
T smart00101 7 MAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEER------NLLSVAYKNVIGARRASWRIISS-IEQKEESRGNEDHVA 79 (244)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHH------HHHHHHHhhhhcccHHHHHHHhH-HHHhhhccCchHHHH
Confidence 45666677999999999999888642 2222111 11223344566777777777643 2211 111111 1
Q ss_pred HHHHHHHHHHHhcCChhH-HHHHHHHhcchhc-cccc----ccChHHHHHHHHHHHHHHHhcCC-----HHHHHHHHHHH
Q 004943 488 MCHAYAAVSYFCIGDAES-SSQAIDLIGPVYQ-MKDT----INGVREEASLHFAYGLLLMRQQD-----FQEARNRLAKG 556 (722)
Q Consensus 488 ~allnla~v~l~~G~~e~-a~~aL~l~~~l~r-~~~~----~~~~~~~A~al~~lG~~~~~~G~-----~~eAk~~L~qA 556 (722)
.+...-.-+- .+-.. +...++++....- ...+ .-....++.++.-++.+ ..|+ .+.|...|++|
T Consensus 80 ~~~~yr~kie---~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~--~~~~e~~~~~~~a~~aY~~A 154 (244)
T smart00101 80 SIKEYRGKIE---TELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEF--KTGAERKEAAENTLVAYKSA 154 (244)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHH--cCcHHHHHHHHHHHHHHHHH
Confidence 1111101110 01111 5556665543211 1111 01122345555555553 2443 55899999999
Q ss_pred HHHHHHhcCC--hHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Q 004943 557 LQIAHNHMGN--LQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKK 603 (722)
Q Consensus 557 L~la~~~~gd--~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkk 603 (722)
++++...+.. +.-.+.+||.==-.|--.+++++|.++.+.|+.-|-.
T Consensus 155 ~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai~ 203 (244)
T smart00101 155 QDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIA 203 (244)
T ss_pred HHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 9998743444 4455556654333344568999999999999988743
No 330
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=33.31 E-value=3.5e+02 Score=26.73 Aligned_cols=56 Identities=18% Similarity=0.193 Sum_probs=36.8
Q ss_pred HHHHHHHHHhcCChhH---HHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004943 490 HAYAAVSYFCIGDAES---SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGL 557 (722)
Q Consensus 490 llnla~v~l~~G~~e~---a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL 557 (722)
+..+..+=+..++.+. .-+++...+|- -...-..-|.+|...|++.+|.+.|++..
T Consensus 13 Lie~~~~al~~~~~~D~e~lL~ALrvLRP~------------~~e~~~~~~~l~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 13 LIEVLSVALRLGDPDDAEALLDALRVLRPE------------FPELDLFDGWLHIVRGDWDDALRLLRELE 71 (160)
T ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhCCC------------chHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3444444455566665 44555555553 22345567889999999999999999963
No 331
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=32.91 E-value=1e+02 Score=34.86 Aligned_cols=100 Identities=9% Similarity=-0.018 Sum_probs=67.3
Q ss_pred HHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHHHH
Q 004943 351 VILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEA 430 (722)
Q Consensus 351 ~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~~ 430 (722)
+-|++-.|.++.|.|+|-++-.- ....+. .+.+.-|+..+....|+|..-...
T Consensus 157 ~dhy~~cG~l~~Alr~YsR~RdY----CTs~kh-----------------------vInm~ln~i~VSI~~~nw~hv~sy 209 (466)
T KOG0686|consen 157 GDHYLDCGQLDNALRCYSRARDY----CTSAKH-----------------------VINMCLNLILVSIYMGNWGHVLSY 209 (466)
T ss_pred HHHHHHhccHHHHHhhhhhhhhh----hcchHH-----------------------HHHHHHHHHHHHHhhcchhhhhhH
Confidence 45677778889999888886555 332221 122234567788889999988888
Q ss_pred HHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 004943 431 LVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAA 477 (722)
Q Consensus 431 l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL 477 (722)
..+|..--...-...+...+.+....|+....++.|..|..+|-.+-
T Consensus 210 ~~~A~st~~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 210 ISKAESTPDANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred HHHHHhCchhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 88877652221112222334567788888899999999999996554
No 332
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=32.71 E-value=76 Score=25.29 Aligned_cols=27 Identities=7% Similarity=-0.079 Sum_probs=22.8
Q ss_pred HHhhHHHHHhhCCHHHHHHHHHHHHHH
Q 004943 411 LENKVAVELTRSGFVEAQEALVQMKNW 437 (722)
Q Consensus 411 Le~Lg~~~l~~g~~~eA~~~l~~Al~l 437 (722)
+..++..+...|+|.+|.+....++++
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 356899999999999999999998885
No 333
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=32.13 E-value=3.4e+02 Score=31.17 Aligned_cols=97 Identities=15% Similarity=0.044 Sum_probs=57.7
Q ss_pred HHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHH
Q 004943 431 LVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAI 510 (722)
Q Consensus 431 l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL 510 (722)
++.|+++.++.++. ..+..+|..+...|+++-|+..|+ .+++. ..+..+|...|+.+......
T Consensus 334 L~~A~~~a~~~~~~------~~W~~Lg~~AL~~g~~~lAe~c~~----k~~d~-------~~L~lLy~~~g~~~~L~kl~ 396 (443)
T PF04053_consen 334 LDIALEIAKELDDP------EKWKQLGDEALRQGNIELAEECYQ----KAKDF-------SGLLLLYSSTGDREKLSKLA 396 (443)
T ss_dssp HHHHHHHCCCCSTH------HHHHHHHHHHHHTTBHHHHHHHHH----HCT-H-------HHHHHHHHHCT-HHHHHHHH
T ss_pred HHHHHHHHHhcCcH------HHHHHHHHHHHHcCCHHHHHHHHH----hhcCc-------cccHHHHHHhCCHHHHHHHH
Confidence 44444555554443 479999999999999999999994 44443 34556788888877666666
Q ss_pred HHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004943 511 DLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQ 558 (722)
Q Consensus 511 ~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~ 558 (722)
+.+..- ++. ..-|. .++..|+.++..+.|.++=+
T Consensus 397 ~~a~~~-------~~~----n~af~---~~~~lgd~~~cv~lL~~~~~ 430 (443)
T PF04053_consen 397 KIAEER-------GDI----NIAFQ---AALLLGDVEECVDLLIETGR 430 (443)
T ss_dssp HHHHHT-------T-H----HHHHH---HHHHHT-HHHHHHHHHHTT-
T ss_pred HHHHHc-------cCH----HHHHH---HHHHcCCHHHHHHHHHHcCC
Confidence 554332 111 11111 12345777777777766533
No 334
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=31.22 E-value=1.6e+02 Score=28.83 Aligned_cols=57 Identities=19% Similarity=0.227 Sum_probs=36.3
Q ss_pred HHHHHHHHhcCChhHHH---HHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 004943 491 AYAAVSYFCIGDAESSS---QAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQI 559 (722)
Q Consensus 491 lnla~v~l~~G~~e~a~---~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~l 559 (722)
..+..+-+..++++.+. .++..++|- -...-..-|.+|...|++.+|.+.|++...-
T Consensus 14 i~~~~~aL~~~d~~D~e~lLdALrvLrP~------------~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 14 IEVLMYALRSADPYDAQAMLDALRVLRPN------------LKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCC------------ccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 33344445567776644 444444553 1123444678888999999999999987554
No 335
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=30.86 E-value=9.4e+02 Score=28.32 Aligned_cols=197 Identities=14% Similarity=0.036 Sum_probs=102.1
Q ss_pred hhHHHHHhhC-----CHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHhhcchh
Q 004943 413 NKVAVELTRS-----GFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVG---CYSEAAFHYVEAAKITESKS 484 (722)
Q Consensus 413 ~Lg~~~l~~g-----~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG---~~~~Al~~f~~AL~l~~~~~ 484 (722)
.+|.++.... ++..|...+.++-+. +-+...+++|.++..-. ++..|..+|..|.+.
T Consensus 293 ~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~----------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~----- 357 (552)
T KOG1550|consen 293 GLGRLYLQGLGVEKIDYEKALKLYTKAAEL----------GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA----- 357 (552)
T ss_pred HHHHHHhcCCCCccccHHHHHHHHHHHHhc----------CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc-----
Confidence 4566666643 667788887777762 23456788888876655 678999999776643
Q ss_pred HHHHHHHHHHHHHHhcCC--hhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHH
Q 004943 485 MQAMCHAYAAVSYFCIGD--AESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMR-QQDFQEARNRLAKGLQIAH 561 (722)
Q Consensus 485 ~~A~allnla~v~l~~G~--~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~-~G~~~eAk~~L~qAL~la~ 561 (722)
|...+..++|.+|.. |. ......+.......+... ...+.+.+|..+.. -++++.+...+...-++..
T Consensus 358 G~~~A~~~la~~y~~-G~gv~r~~~~A~~~~k~aA~~g--------~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 358 GHILAIYRLALCYEL-GLGVERNLELAFAYYKKAAEKG--------NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGY 428 (552)
T ss_pred CChHHHHHHHHHHHh-CCCcCCCHHHHHHHHHHHHHcc--------ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhh
Confidence 556777888888877 53 122555555554443321 11223333333321 1777776666655544422
Q ss_pred HhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHc---C-CchhHhHHHHHH
Q 004943 562 NHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQL---G-DRGNEMENDEYR 637 (722)
Q Consensus 562 ~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~---G-d~~~A~e~~~~~ 637 (722)
+ ..+..+-.+...+....... ........+...+.+..... -.-+...|++.|.-- + |+..|..+|..+
T Consensus 429 ~---~~q~~a~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~g-~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a 501 (552)
T KOG1550|consen 429 E---VAQSNAAYLLDQSEEDLFSR---GVISTLERAFSLYSRAAAQG-NADAILKLGDYYYYGLGTGRDPEKAAAQYARA 501 (552)
T ss_pred h---HHhhHHHHHHHhcccccccc---ccccchhHHHHHHHHHHhcc-CHHHHhhhcceeeecCCCCCChHHHHHHHHHH
Confidence 1 23443433333332222211 11122222333333221111 133556677766543 1 456666665554
Q ss_pred HHH
Q 004943 638 RKK 640 (722)
Q Consensus 638 ~~~ 640 (722)
...
T Consensus 502 ~~~ 504 (552)
T KOG1550|consen 502 SEQ 504 (552)
T ss_pred HHh
Confidence 433
No 336
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=29.74 E-value=1.8e+02 Score=32.12 Aligned_cols=90 Identities=8% Similarity=0.027 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCC-CCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhh
Q 004943 343 YALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGIT-DGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTR 421 (722)
Q Consensus 343 ~aLvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~-~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~ 421 (722)
|+-+|++-.- ...-...+|++.+..||+.++..+++.... ......+..+++-- .+..|++ +.+++|.+..
T Consensus 217 CA~AyvLLAE--EEa~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDt--nvl~YIK----RRLAMCARkl 288 (556)
T KOG3807|consen 217 CATAYVLLAE--EEATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDT--NVLVYIK----RRLAMCARKL 288 (556)
T ss_pred hhhHHHhhhh--hhhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhccc--chhhHHH----HHHHHHHHHh
Confidence 5555554321 112234689999999999988877654321 11111122222211 2333344 4479999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCc
Q 004943 422 SGFVEAQEALVQMKNWFIRFPT 443 (722)
Q Consensus 422 g~~~eA~~~l~~Al~l~~~~~d 443 (722)
|+..||.+.++. +.+++|-
T Consensus 289 GrlrEA~K~~RD---L~ke~pl 307 (556)
T KOG3807|consen 289 GRLREAVKIMRD---LMKEFPL 307 (556)
T ss_pred hhHHHHHHHHHH---HhhhccH
Confidence 999999988654 5566663
No 337
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=28.93 E-value=8.4e+02 Score=29.56 Aligned_cols=208 Identities=14% Similarity=0.157 Sum_probs=103.5
Q ss_pred hHHHHHhhCCHHHHHHHHHHHHH-----HHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHH------HHHhhcc
Q 004943 414 KVAVELTRSGFVEAQEALVQMKN-----WFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVE------AAKITES 482 (722)
Q Consensus 414 Lg~~~l~~g~~~eA~~~l~~Al~-----l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~------AL~l~~~ 482 (722)
|+.-.+..=+++-|.+.|.+..+ +.-++.+.-..++.--..+++......|.+.+|..+|.+ |+.+..|
T Consensus 591 LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTD 670 (1081)
T KOG1538|consen 591 LAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLADVFAYQGKFHEAAKLFKRSGHENRALEMYTD 670 (1081)
T ss_pred HHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHH
Confidence 34444444466666666665543 222322221122212244667788899999999999965 3444444
Q ss_pred hhHHHHHHHHHHHHHHhcCChhH----HHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHH------
Q 004943 483 KSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNR------ 552 (722)
Q Consensus 483 ~~~~A~allnla~v~l~~G~~e~----a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~------ 552 (722)
..+... +.=++..|++++ .+.--+.++.+ ..+ +|++ ......|+...|...
T Consensus 671 lRMFD~-----aQE~~~~g~~~eKKmL~RKRA~WAr~~-------keP--kaAA-----EmLiSaGe~~KAi~i~~d~gW 731 (1081)
T KOG1538|consen 671 LRMFDY-----AQEFLGSGDPKEKKMLIRKRADWARNI-------KEP--KAAA-----EMLISAGEHVKAIEICGDHGW 731 (1081)
T ss_pred HHHHHH-----HHHHhhcCChHHHHHHHHHHHHHhhhc-------CCc--HHHH-----HHhhcccchhhhhhhhhcccH
Confidence 333333 344555666554 22222222222 111 2222 222345666666543
Q ss_pred HHHHHHHHHHhcCChH---H--HHHHHH------HHHHHHHhCCChHHHHHH------HHHHHHHHHHcCChhHHHHHHH
Q 004943 553 LAKGLQIAHNHMGNLQ---L--VSQYLT------ILGNLALALHDTVQAREI------LRSSLTLAKKLYDIPTQIWALS 615 (722)
Q Consensus 553 L~qAL~la~~~~gd~~---l--~a~~L~------~LG~~~~a~g~~~qA~~~------l~~Al~lAkki~D~~~q~~al~ 615 (722)
+.-+.+++++ +.-.. + .+..+- +-++++...||-.+-.++ +.+|.++|.+.+.-.. -++.
T Consensus 732 ~d~lidI~rk-ld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~ksiVqlHve~~~W~eAFalAe~hPe~~~--dVy~ 808 (1081)
T KOG1538|consen 732 VDMLIDIARK-LDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDLKSLVQLHVETQRWDEAFALAEKHPEFKD--DVYM 808 (1081)
T ss_pred HHHHHHHHhh-cchhhhhHHHHHHHHHhhccccchHHHHHHHhccHHHHhhheeecccchHhHhhhhhCccccc--cccc
Confidence 2334455443 21111 1 111111 224677777777776554 4567777777754321 1334
Q ss_pred HHHHHHHHcCCchhHhHHHHHHHHHHHH
Q 004943 616 VLTALYQQLGDRGNEMENDEYRRKKLDE 643 (722)
Q Consensus 616 ~L~~l~~~~Gd~~~A~e~~~~~~~~~~~ 643 (722)
-.++-.+...+.++|..+|..+.+..+.
T Consensus 809 pyaqwLAE~DrFeEAqkAfhkAGr~~EA 836 (1081)
T KOG1538|consen 809 PYAQWLAENDRFEEAQKAFHKAGRQREA 836 (1081)
T ss_pred hHHHHhhhhhhHHHHHHHHHHhcchHHH
Confidence 4455666666667777766655544443
No 338
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=27.41 E-value=56 Score=37.44 Aligned_cols=92 Identities=13% Similarity=0.174 Sum_probs=69.9
Q ss_pred ccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHHHHHHHH
Q 004943 355 RPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQM 434 (722)
Q Consensus 355 ~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~~l~~A 434 (722)
..-+.|+.|...+.+|+++ + ++ .+..-.+-+++++..++|..|+.-...|
T Consensus 15 l~~~~fd~avdlysKaI~l---------d-pn--------------------ca~~~anRa~a~lK~e~~~~Al~Da~ka 64 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIEL---------D-PN--------------------CAIYFANRALAHLKVESFGGALHDALKA 64 (476)
T ss_pred cccchHHHHHHHHHHHHhc---------C-Cc--------------------ceeeechhhhhheeechhhhHHHHHHhh
Confidence 3456789999999999888 2 22 2222344577888999999999988888
Q ss_pred HHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchh
Q 004943 435 KNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS 484 (722)
Q Consensus 435 l~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~ 484 (722)
+++- |+. ...++..|.+.++++.+.+|+..|+.......+..
T Consensus 65 ie~d---P~~-----~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~ 106 (476)
T KOG0376|consen 65 IELD---PTY-----IKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDP 106 (476)
T ss_pred hhcC---chh-----hheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcH
Confidence 8753 553 35588899999999999999999998877765543
No 339
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=27.27 E-value=1.8e+02 Score=30.83 Aligned_cols=69 Identities=17% Similarity=0.212 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcC
Q 004943 530 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLY 605 (722)
Q Consensus 530 A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~ 605 (722)
+.++.+-+..|+...+++.+..-.++||++. +| .+....+||...+....+.+|.+.+.+|..+.+..+
T Consensus 44 ~~Y~tnralchlk~~~~~~v~~dcrralql~----~N---~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~ 112 (284)
T KOG4642|consen 44 ASYYTNRALCHLKLKHWEPVEEDCRRALQLD----PN---LVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQP 112 (284)
T ss_pred chhhhhHHHHHHHhhhhhhhhhhHHHHHhcC----hH---HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCC
Confidence 4567777788888889999999999999883 33 456788999999999999999999999999999874
No 340
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=27.24 E-value=3.6e+02 Score=26.14 Aligned_cols=88 Identities=10% Similarity=-0.000 Sum_probs=48.6
Q ss_pred HHHHHhHHHHHhhc---cHhHHhHHHHHHhccCCCCChHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCcch
Q 004943 6 EGLWGLADYHENKG---EIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCF 82 (722)
Q Consensus 6 ~~L~~lAe~~~~~~---~i~~ai~CLeA~l~~~~~l~p~~EA~~rLrla~iL~e~T~N~~~A~thLeka~~l~~~~~~~~ 82 (722)
...+.+|=.+..+. +|..||.|||.++++. |..+=|-+|=|=.+=...-+|
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~----~~~~rRe~lyYLAvg~yRlke---------------------- 86 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA----HPERRRECLYYLAVGHYRLKE---------------------- 86 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc----CcccchhhhhhhHHHHHHHhh----------------------
Confidence 44556666644443 9999999999999722 222222233222211111122
Q ss_pred hhhhhhhHHHHHHHHHcCCCchHHHHHHHHHHHhhhhhccc
Q 004943 83 ELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDV 123 (722)
Q Consensus 83 dlk~~~~~lLa~~y~~~~~~~~~k~~l~k~i~~~~~~~~~~ 123 (722)
|+..--+.+.+..+.|.+.+-..|++.|+..+. -|++
T Consensus 87 ---Y~~s~~yvd~ll~~e~~n~Qa~~Lk~~ied~it-kegl 123 (149)
T KOG3364|consen 87 ---YSKSLRYVDALLETEPNNRQALELKETIEDKIT-KEGL 123 (149)
T ss_pred ---HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHh-hcce
Confidence 223333556667777665555578888877764 3444
No 341
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=27.17 E-value=1.5e+02 Score=33.77 Aligned_cols=70 Identities=17% Similarity=0.318 Sum_probs=49.4
Q ss_pred HHHhhcCChhHHHHHHHHHHHHHhcccCChhHHHHHHHhhhHHhhhcCccccccccchhhhhhHHHHHH----Hhhhhhh
Q 004943 158 VCATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIFY----RLRICDY 233 (722)
Q Consensus 158 ~~A~~~~~~~~~v~f~l~~~~~~L~~~~~~~~v~~~l~~~~~~~~~i~~~~~~~~~g~~~~~e~l~i~~----~l~ic~~ 233 (722)
++|.+.+.|++-|+.++|+.|-.+..-+....+ + ..++++..|. +++|+.|
T Consensus 342 ~LA~~ghyPaIdvl~SiSRvm~~i~~~~h~~~a----~---------------------~~r~lls~y~e~edLi~iGaY 396 (441)
T COG1157 342 ALAEAGHYPAIDVLASISRVMPQIVSEEHRKAA----R---------------------RLRQLLSRYEENEDLIRIGAY 396 (441)
T ss_pred hHHhcCCCCCcchHHHHHHHhhhcCCHHHHHHH----H---------------------HHHHHHHHHHHHHHHHHhcCc
Confidence 679999999999999999999888652211111 1 1256666666 7889999
Q ss_pred hhhhhhhhhHHHHHHHhHHHHHHHH
Q 004943 234 KNAAHHVDNLDAAMKADKQKMQEIQ 258 (722)
Q Consensus 234 ~~~~~~v~~~~~~~~~~~~~~~~~~ 258 (722)
..=.| ..+|.++ ++.|.|.
T Consensus 397 ~~G~D--~~~D~Ai----~~~p~i~ 415 (441)
T COG1157 397 QKGSD--PELDKAI----KLYPKIE 415 (441)
T ss_pred cCCCC--HHHHHHH----HhhHHHH
Confidence 98766 5677777 4555554
No 342
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=26.76 E-value=4.8e+02 Score=27.20 Aligned_cols=106 Identities=11% Similarity=0.019 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHH-HHHHHHHHHHhhHHHHHhhC---CHHHHHHHHHHHHH
Q 004943 361 KECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGV-YLMLLMQFLENKVAVELTRS---GFVEAQEALVQMKN 436 (722)
Q Consensus 361 ~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~-y~~l~a~lLe~Lg~~~l~~g---~~~eA~~~l~~Al~ 436 (722)
++-..+..+.+++|++.+-.....+. +.+ |..++.-..+.++-+.-... --+.|.+.|++|.+
T Consensus 88 ~EL~~~C~eii~lId~~Lip~~~~~e-------------skvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~ 154 (236)
T PF00244_consen 88 DELIDICNEIIRLIDKSLIPSATSPE-------------SKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALE 154 (236)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHS-SHH-------------HHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccccchh-------------HHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHH
Confidence 45667778888887764332211110 123 44444444444444331111 12589999999999
Q ss_pred HHHh-CCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 004943 437 WFIR-FPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKI 479 (722)
Q Consensus 437 l~~~-~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l 479 (722)
+... +|..-....+++++..-.++.-+|+.++|....++|...
T Consensus 155 ~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 155 IAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9998 654323446778887777888899999999998877653
No 343
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=26.34 E-value=8.7e+02 Score=27.76 Aligned_cols=92 Identities=13% Similarity=0.060 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHhhhhhcccccchhHHHHhh---------HHHhHhhhc--C-ChHHHHHHHHhHHHHHhhcCChhHHHHH
Q 004943 105 QKLILYKALDLTSSASQDVAVKLWSCNFNS---------QLANAFIIE--G-DYQSSISALQSGYVCATEISYPDLQMFF 172 (722)
Q Consensus 105 ~k~~l~k~i~~~~~~~~~~~~~~W~~~f~f---------~la~~~~~~--~-d~~~A~~~L~~g~~~A~~~~~~~~~v~f 172 (722)
...++.|.|.+| |++. ..||-.+++= .+--+.+.+ | -...|+...-...+.+.+.|.|+-++.
T Consensus 252 liSA~hKSvRGS--D~dA--ALyylARmi~~GeDp~yiARRlv~~AsEDIGlAdP~Al~~a~aa~da~~~lG~PE~~i~- 326 (436)
T COG2256 252 LISALHKSVRGS--DPDA--ALYYLARMIEAGEDPLYIARRLVRIASEDIGLADPNALQVAVAALDAVERLGSPEARIA- 326 (436)
T ss_pred HHHHHHHhhccC--CcCH--HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHHhCCchHHHH-
Confidence 344566666663 3333 5688777543 111223233 2 124477777888899999999999976
Q ss_pred HHHHHHHHhcccCChhHHHHHHHhhhHHhh
Q 004943 173 ATAILHVHLMQWDDENSVLRSINQCDRVWE 202 (722)
Q Consensus 173 ~l~~~~~~L~~~~~~~~v~~~l~~~~~~~~ 202 (722)
|+++-++|....++|+|-.|.+.+.+-+.
T Consensus 327 -LAqavvyLA~aPKSNavY~A~~~A~~d~~ 355 (436)
T COG2256 327 -LAQAVVYLALAPKSNAVYTAINAALADAK 355 (436)
T ss_pred -HHHHHHHHHhCCccHHHHHHHHHHHHHHH
Confidence 78888999989999999999988877776
No 344
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=25.98 E-value=7.5e+02 Score=26.08 Aligned_cols=103 Identities=11% Similarity=0.040 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHH-HHHHHHHHHHhhHHHHHhhCC-----HHHHHHHHHHH
Q 004943 361 KECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGV-YLMLLMQFLENKVAVELTRSG-----FVEAQEALVQM 434 (722)
Q Consensus 361 ~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~-y~~l~a~lLe~Lg~~~l~~g~-----~~eA~~~l~~A 434 (722)
++-..+..+.+.+|++.+--.-. . ... .+ |+.|+.-..+.++-+. .|+ -+.|.+.|+.|
T Consensus 90 ~EL~~iC~eil~lid~~Lip~~~-~-------~es-----kVFy~KmKGDYyRYlaE~~--~~~e~~~~~~~a~~aY~~A 154 (244)
T smart00101 90 TELSKICDGILKLLESHLIPSAS-A-------AES-----KVFYLKMKGDYHRYLAEFK--TGAERKEAAENTLVAYKSA 154 (244)
T ss_pred HHHHHHHHHHHHHHHHhCccccC-c-------HHH-----HHHHHHHHHHHHHHHHHHc--CcHHHHHHHHHHHHHHHHH
Confidence 46667778888886654321100 0 111 23 4444444444444432 222 34899999999
Q ss_pred HHHHHh-CCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004943 435 KNWFIR-FPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAK 478 (722)
Q Consensus 435 l~l~~~-~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~ 478 (722)
.++... +|..-....+++++..=.|+.-+++.++|..+.++|..
T Consensus 155 ~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd 199 (244)
T smart00101 155 QDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 199 (244)
T ss_pred HHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999776 65422234567788777788889999999887776654
No 345
>PRK14562 haloacid dehalogenase superfamily protein; Provisional
Probab=25.81 E-value=7e+02 Score=25.45 Aligned_cols=32 Identities=16% Similarity=0.202 Sum_probs=22.7
Q ss_pred HHhhccCCChHHHHHHHHHHHHHHHHHHHhcC
Q 004943 351 VILGRPKGLFKECMQRIQSGMQTIQDALLKLG 382 (722)
Q Consensus 351 ~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg 382 (722)
+++..+++.+++|.+.+.++-..+++....+.
T Consensus 37 ~I~~lHr~~~~~a~~~l~~a~~~~~~l~~~~~ 68 (204)
T PRK14562 37 AIRAIHRGDFEEAEKLLKEAEELVKELKELLK 68 (204)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555667889999999988888666444443
No 346
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=25.47 E-value=3e+02 Score=23.65 Aligned_cols=41 Identities=5% Similarity=0.079 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCC
Q 004943 343 YALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGI 383 (722)
Q Consensus 343 ~aLvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~ 383 (722)
-+.-|+...+-....|++.+|..+|++|.+++-+.+..-.|
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD 45 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPD 45 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 35677888899999999999999999999996665444333
No 347
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=25.30 E-value=1.1e+02 Score=20.57 Aligned_cols=25 Identities=12% Similarity=-0.005 Sum_probs=21.5
Q ss_pred HhhHHHHHhhCCHHHHHHHHHHHHH
Q 004943 412 ENKVAVELTRSGFVEAQEALVQMKN 436 (722)
Q Consensus 412 e~Lg~~~l~~g~~~eA~~~l~~Al~ 436 (722)
+.+..++...|+++.|.+.+.++.+
T Consensus 5 ~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 5 NALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5567888899999999999998876
No 348
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=25.29 E-value=1.2e+03 Score=29.16 Aligned_cols=133 Identities=12% Similarity=0.081 Sum_probs=78.2
Q ss_pred HhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHH
Q 004943 462 SVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLM 541 (722)
Q Consensus 462 alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~ 541 (722)
..+++..|+....+-++...+. -.+...-|.++.++|+.+++..+|+........ + - ..+-.+-.+|.
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~---~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D----~----~tLq~l~~~y~ 88 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNA---LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-D----D----LTLQFLQNVYR 88 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCc---HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-c----h----HHHHHHHHHHH
Confidence 3445666666665444443332 222233367778888877655666655443221 1 1 35566667778
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 004943 542 RQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVL 617 (722)
Q Consensus 542 ~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L 617 (722)
.+|.+++|..+|+++++- .++ .+=.+..+| .|.+-+++. ++=..|+++.|..|.++--.|+-..+
T Consensus 89 d~~~~d~~~~~Ye~~~~~----~P~--eell~~lFm--ayvR~~~yk---~qQkaa~~LyK~~pk~~yyfWsV~Sl 153 (932)
T KOG2053|consen 89 DLGKLDEAVHLYERANQK----YPS--EELLYHLFM--AYVREKSYK---KQQKAALQLYKNFPKRAYYFWSVISL 153 (932)
T ss_pred HHhhhhHHHHHHHHHHhh----CCc--HHHHHHHHH--HHHHHHHHH---HHHHHHHHHHHhCCcccchHHHHHHH
Confidence 889999999999988765 223 222233333 344444444 44467888888888887778876543
No 349
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=25.19 E-value=98 Score=20.24 Aligned_cols=25 Identities=20% Similarity=0.217 Sum_probs=21.6
Q ss_pred HhhHHHHHhhCCHHHHHHHHHHHHH
Q 004943 412 ENKVAVELTRSGFVEAQEALVQMKN 436 (722)
Q Consensus 412 e~Lg~~~l~~g~~~eA~~~l~~Al~ 436 (722)
..+..++...|++++|.+.+.++.+
T Consensus 4 ~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 4 NSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHccchHHHHHHHHHHHhH
Confidence 4568889999999999999998865
No 350
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=25.02 E-value=1.2e+02 Score=20.13 Aligned_cols=25 Identities=16% Similarity=0.049 Sum_probs=21.6
Q ss_pred HhhHHHHHhhCCHHHHHHHHHHHHH
Q 004943 412 ENKVAVELTRSGFVEAQEALVQMKN 436 (722)
Q Consensus 412 e~Lg~~~l~~g~~~eA~~~l~~Al~ 436 (722)
+.+...+...|++++|.+.+.++.+
T Consensus 4 n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 4 NTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4467889999999999999999875
No 351
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=24.43 E-value=1.1e+03 Score=26.75 Aligned_cols=148 Identities=10% Similarity=-0.065 Sum_probs=83.8
Q ss_pred HhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCH-------HHHHHHHHHHHHhhcc--
Q 004943 412 ENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCY-------SEAAFHYVEAAKITES-- 482 (722)
Q Consensus 412 e~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~-------~~Al~~f~~AL~l~~~-- 482 (722)
+-||-++...+||+.|...|+.+..-|....-. ...+-++-..|....-.|.. ++...+++.|......
T Consensus 212 R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw--~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~ 289 (414)
T PF12739_consen 212 RRLADLAFMLRDYELAYSTYRLLKKDFKNDKAW--KYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSA 289 (414)
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHHHhhchhH--HHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhh
Confidence 457999999999999999999999977543332 23344555556555555522 2555555555433222
Q ss_pred ------hhHHHHHHHHHHHHHHhcCChhH----HHHHHHH-----------------hcchh--ccc-cc--ccChHHHH
Q 004943 483 ------KSMQAMCHAYAAVSYFCIGDAES----SSQAIDL-----------------IGPVY--QMK-DT--INGVREEA 530 (722)
Q Consensus 483 ------~~~~A~allnla~v~l~~G~~e~----a~~aL~l-----------------~~~l~--r~~-~~--~~~~~~~A 530 (722)
.....-|.+..+.++...|.+.+ +-+..+. +.--+ ... .. .+....++
T Consensus 290 ~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~~~~~~~~~~~~~~r~RK~ 369 (414)
T PF12739_consen 290 LPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCYASLRSNRPSPGLTRFRKY 369 (414)
T ss_pred ccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhhcccccCCCCccchhhHHH
Confidence 11222344444555666666432 1111111 11111 111 00 11113467
Q ss_pred HHHHHH-HHHHHhcCCHHHHHHHHHHHHHHHH
Q 004943 531 SLHFAY-GLLLMRQQDFQEARNRLAKGLQIAH 561 (722)
Q Consensus 531 ~al~~l-G~~~~~~G~~~eAk~~L~qAL~la~ 561 (722)
+.+.++ |.-+...|....|.++|.+|+....
T Consensus 370 af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 370 AFHMVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 777777 5555689999999999999999853
No 352
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=24.41 E-value=5.5e+02 Score=29.53 Aligned_cols=129 Identities=16% Similarity=0.080 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHH--------HHhhcchhHHHHHHHHHHHHHHhcCChhH---HHHHHHHhcchh
Q 004943 449 ESMIEMLRGQYAHSVGCYSEAAFHYVEA--------AKITESKSMQAMCHAYAAVSYFCIGDAES---SSQAIDLIGPVY 517 (722)
Q Consensus 449 ~a~i~~llG~~~~alG~~~~Al~~f~~A--------L~l~~~~~~~A~allnla~v~l~~G~~e~---a~~aL~l~~~l~ 517 (722)
.+..++-.|...+....|++|+...-.| -++.....--++..+-+.++|.+..+-.. +..=|.+.+.-+
T Consensus 162 mglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf 241 (568)
T KOG2561|consen 162 MGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGF 241 (568)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhh
Q ss_pred ccc-ccc---------cChHHHHHHHHHH---HHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 004943 518 QMK-DTI---------NGVREEASLHFAY---GLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILG 578 (722)
Q Consensus 518 r~~-~~~---------~~~~~~A~al~~l---G~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG 578 (722)
..+ |++ ++-.++|-.+... |.+.+|+|.-++|-++|..|-..-. +.--..-+=..+..||
T Consensus 242 ~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~-elki~d~~lsllv~mG 314 (568)
T KOG2561|consen 242 ERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLL-ELKINDETLSLLVGMG 314 (568)
T ss_pred hhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH-HeeccchHHHHHHHcC
No 353
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=23.73 E-value=1.1e+02 Score=34.55 Aligned_cols=36 Identities=11% Similarity=0.004 Sum_probs=30.8
Q ss_pred HHHHHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCC
Q 004943 407 LMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFP 442 (722)
Q Consensus 407 ~a~lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~ 442 (722)
.+.++.++|++|+..+||.+|++.+.+.+--..+.-
T Consensus 163 ~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k 198 (404)
T PF10255_consen 163 HISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTK 198 (404)
T ss_pred heehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 466678999999999999999999999998766543
No 354
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=23.51 E-value=2.3e+02 Score=29.89 Aligned_cols=148 Identities=20% Similarity=0.153 Sum_probs=94.3
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 004943 541 MRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTAL 620 (722)
Q Consensus 541 ~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l 620 (722)
...|+.+.|...+.+||.++-+ -. .....+|.-....|+.+.|.+-+++.+.+= -.|. .-+..-|
T Consensus 6 ~~~~D~~aaaely~qal~lap~-w~------~gwfR~g~~~ekag~~daAa~a~~~~L~ld--p~D~---~gaa~kL--- 70 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPE-WA------AGWFRLGEYTEKAGEFDAAAAAYEEVLELD--PEDH---GGAALKL--- 70 (287)
T ss_pred cccCChHHHHHHHHHHhhcCch-hh------hhhhhcchhhhhcccHHHHHHHHHHHHcCC--cccc---cchhhhH---
Confidence 4678999999999999999652 22 345578888888899888888888877641 1232 3344443
Q ss_pred HHHcCCchhHhHHHHHHHHHHHHHhHHHHHhhhchhhHHHHhhhcchhhccchhhHHhhhhcccccccccCCcccCCCCC
Q 004943 621 YQQLGDRGNEMENDEYRRKKLDELQKRLADAYSSIHHIELISKVKLEVQQFHELDIKRAMANQSMSVNLDIPESIGLSTP 700 (722)
Q Consensus 621 ~~~~Gd~~~A~e~~~~~~~~~~~l~~~~~~a~~~~~h~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (722)
+..|+.+-....-.. ..+.|+..+++- -+|+ |+++..-+|.++-.--|-.+..++ ..--||+-=--||.++
T Consensus 71 -a~lg~~e~p~~pP~a---YVe~LFD~~Ae~---Fd~~-LVdkL~Y~vP~~l~emI~~~~~g~-F~~~lDLGCGTGL~G~ 141 (287)
T COG4976 71 -AVLGRGETPEKPPSA---YVETLFDQYAER---FDHI-LVDKLGYSVPELLAEMIGKADLGP-FRRMLDLGCGTGLTGE 141 (287)
T ss_pred -HhhcCCCCCCCCchH---HHHHHHHHHHHH---HHHH-HHHHhcCccHHHHHHHHHhccCCc-cceeeecccCcCcccH
Confidence 244544333222211 223334444443 3566 999999999766544455555555 7778999999999888
Q ss_pred CCCccccccccc
Q 004943 701 LPVQSSSRLIDL 712 (722)
Q Consensus 701 ~~~~~~~~~~~~ 712 (722)
.--+-..||-..
T Consensus 142 ~lR~~a~~ltGv 153 (287)
T COG4976 142 ALRDMADRLTGV 153 (287)
T ss_pred hHHHHHhhccCC
Confidence 766556666433
No 355
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=23.03 E-value=1.4e+02 Score=25.58 Aligned_cols=30 Identities=20% Similarity=0.083 Sum_probs=23.8
Q ss_pred HHhhHHHHHhhCCHHHHHHHHHHHHHHHHh
Q 004943 411 LENKVAVELTRSGFVEAQEALVQMKNWFIR 440 (722)
Q Consensus 411 Le~Lg~~~l~~g~~~eA~~~l~~Al~l~~~ 440 (722)
|-..|.-.=..|+|++|++.|.++++.|-.
T Consensus 9 Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 9 LVTQAFDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 344566677788999999999999998866
No 356
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=22.57 E-value=6.3e+02 Score=23.46 Aligned_cols=60 Identities=12% Similarity=-0.037 Sum_probs=42.6
Q ss_pred HhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 004943 419 LTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKI 479 (722)
Q Consensus 419 l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l 479 (722)
....+.+-=..++.-+++-+.+...+... .+..++.+|.-.-+.--|+++..-.+++|..
T Consensus 48 ~~ten~d~k~~yLl~sve~~s~a~~Lsp~-~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 48 KKTENPDVKFRYLLGSVECFSRAVELSPD-SAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HhccCchHHHHHHHHhHHHHHHHhccChh-HHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 34557777677777777777775543322 3788888888878888888888888777754
No 357
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=22.43 E-value=1.3e+03 Score=27.13 Aligned_cols=157 Identities=12% Similarity=-0.038 Sum_probs=86.1
Q ss_pred HHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHh---hc
Q 004943 410 FLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSV-----GCYSEAAFHYVEAAKI---TE 481 (722)
Q Consensus 410 lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~al-----G~~~~Al~~f~~AL~l---~~ 481 (722)
.+++.+......++..+|.+.++.+.+. +-....+.+|.++..- .+.+.|..+|..+.+. .-
T Consensus 214 ~~~~~~~~~~~~~~~~~a~~~~~~~a~~----------g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a 283 (552)
T KOG1550|consen 214 SLEGEGNERNESGELSEAFKYYREAAKL----------GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAA 283 (552)
T ss_pred cccccCcccccchhhhHHHHHHHHHHhh----------cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555566677776666663 2234455566654433 4899999999888762 11
Q ss_pred chhHHHHHHHHHHHHHHhcCC-----hhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcC---CHHHHHHHH
Q 004943 482 SKSMQAMCHAYAAVSYFCIGD-----AESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQ---DFQEARNRL 553 (722)
Q Consensus 482 ~~~~~A~allnla~v~l~~G~-----~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G---~~~eAk~~L 553 (722)
.. +...+...+|.+|....- ++.+...+...... +.. .+.+.+|..+.... ++..|..+|
T Consensus 284 ~~-~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~-------g~~----~a~~~lg~~~~~g~~~~d~~~A~~yy 351 (552)
T KOG1550|consen 284 TK-GLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL-------GNP----DAQYLLGVLYETGTKERDYRRAFEYY 351 (552)
T ss_pred hh-cCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc-------CCc----hHHHHHHHHHHcCCccccHHHHHHHH
Confidence 11 244566778888887332 12233333333222 212 46677888876554 356777777
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHhCC----ChHHHHHHHHHH
Q 004943 554 AKGLQIAHNHMGNLQLVSQYLTILGNLALALH----DTVQAREILRSS 597 (722)
Q Consensus 554 ~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g----~~~qA~~~l~~A 597 (722)
..|-+. |+ ..+...++..|.... +.+.|...++.|
T Consensus 352 ~~Aa~~-----G~----~~A~~~la~~y~~G~gv~r~~~~A~~~~k~a 390 (552)
T KOG1550|consen 352 SLAAKA-----GH----ILAIYRLALCYELGLGVERNLELAFAYYKKA 390 (552)
T ss_pred HHHHHc-----CC----hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHH
Confidence 776332 22 245556666555431 444444444443
No 358
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.58 E-value=6.8e+02 Score=30.04 Aligned_cols=79 Identities=19% Similarity=0.139 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHH
Q 004943 453 EMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASL 532 (722)
Q Consensus 453 ~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~a 532 (722)
+..+|.++...|++.-|.+.|..| ++.+ .|-++|...|+.+-...+ ...++..+... . +
T Consensus 669 w~~Lg~~al~~~~l~lA~EC~~~a----~d~~-------~LlLl~t~~g~~~~l~~l----a~~~~~~g~~N----~--A 727 (794)
T KOG0276|consen 669 WRQLGDAALSAGELPLASECFLRA----RDLG-------SLLLLYTSSGNAEGLAVL----ASLAKKQGKNN----L--A 727 (794)
T ss_pred HHHHHHHHhhcccchhHHHHHHhh----cchh-------hhhhhhhhcCChhHHHHH----HHHHHhhcccc----h--H
Confidence 677899999999999999999433 3332 222345555665432222 22222222111 1 2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 004943 533 HFAYGLLLMRQQDFQEARNRLAKG 556 (722)
Q Consensus 533 l~~lG~~~~~~G~~~eAk~~L~qA 556 (722)
+ ..++..|+++++.+.|.+.
T Consensus 728 F----~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 728 F----LAYFLSGDYEECLELLIST 747 (794)
T ss_pred H----HHHHHcCCHHHHHHHHHhc
Confidence 2 2346789999988888665
No 359
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=21.40 E-value=2.4e+02 Score=30.21 Aligned_cols=85 Identities=13% Similarity=-0.017 Sum_probs=69.2
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 004943 541 MRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTAL 620 (722)
Q Consensus 541 ~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l 620 (722)
+..-.+.-|+.++..||-+|. --||+...+.+-..-|-.|+...+++-|..++..|+.+..+-.-+.+|.+--..|...
T Consensus 50 ~s~~~~~n~~e~~d~ALm~Ae-~r~D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d~L~~We~rLet~L~~~ 128 (368)
T COG5091 50 HSDATMENAKELLDKALMTAE-GRGDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVDDTLPLWEDRLETKLNKK 128 (368)
T ss_pred hcccChhhHHHHHHHHHHhhh-ccCCcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHhHh
Confidence 456678889999999999987 5999888887777778889999999999999999999977776676666666666666
Q ss_pred HHHcCC
Q 004943 621 YQQLGD 626 (722)
Q Consensus 621 ~~~~Gd 626 (722)
+..+.+
T Consensus 129 ~kkQ~~ 134 (368)
T COG5091 129 NKKQKD 134 (368)
T ss_pred hHhhcc
Confidence 655554
No 360
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=21.14 E-value=1.2e+03 Score=26.01 Aligned_cols=134 Identities=13% Similarity=0.099 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCh----HHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcC
Q 004943 530 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNL----QLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLY 605 (722)
Q Consensus 530 A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~----~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~ 605 (722)
+..-+.++.+|...+++..|-..|.-. ..+.|.. .-......-+|.+|+..+|..+|+....++.-+-....
T Consensus 103 ~~irl~LAsiYE~Eq~~~~aaq~L~~I----~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~ 178 (399)
T KOG1497|consen 103 ASIRLHLASIYEKEQNWRDAAQVLVGI----PLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESS 178 (399)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcc----CcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhccc
Confidence 567788899999988888887666422 1112221 12224455789999999999999988766655554556
Q ss_pred ChhHHHHHHHHHHHHHHHcCCc-hhHhHHHHHHHHHHHHHhHHHHHhhhchhhHHHHhhhcchh
Q 004943 606 DIPTQIWALSVLTALYQQLGDR-GNEMENDEYRRKKLDELQKRLADAYSSIHHIELISKVKLEV 668 (722)
Q Consensus 606 D~~~q~~al~~L~~l~~~~Gd~-~~A~e~~~~~~~~~~~l~~~~~~a~~~~~h~~l~~~~~~~~ 668 (722)
+...++.--+--+++.-..|.. +.|..+|+...++... .....+|-.+..|=+|+...+.++
T Consensus 179 Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels~~ki~~-e~~~~~aL~~a~~CtlLA~~gpqr 241 (399)
T KOG1497|consen 179 NEQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQRKIVD-ESERLEALKKALQCTLLASAGPQR 241 (399)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHhHhheeecCCChHH
Confidence 6655555445556666666666 5556666655444321 122334444444444444444433
No 361
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=20.74 E-value=3.3e+02 Score=23.92 Aligned_cols=60 Identities=18% Similarity=0.102 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHH
Q 004943 571 SQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMEND 634 (722)
Q Consensus 571 a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~ 634 (722)
..+...|+..+...|++++|.+.+-..+.-.+..+|-. +...|=+++...|+.+.-...|
T Consensus 22 ~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~----ar~~ll~~f~~lg~~~plv~~~ 81 (90)
T PF14561_consen 22 LDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDA----ARKRLLDIFELLGPGDPLVSEY 81 (90)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCH----HHHHHHHHHHHH-TT-HHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccH----HHHHHHHHHHHcCCCChHHHHH
Confidence 36888999999999999999999999888777775542 4445556677778765544433
No 362
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=20.57 E-value=2.7e+02 Score=28.49 Aligned_cols=57 Identities=21% Similarity=0.258 Sum_probs=36.6
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHH
Q 004943 415 VAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHY 473 (722)
Q Consensus 415 g~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f 473 (722)
+.-...+|++++|.+.+..|-+....+.+.+..+ -..+..|.+-.++-.|-+|...|
T Consensus 36 aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~--pel~~ag~~~~a~QEyvEA~~l~ 92 (204)
T COG2178 36 AIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGF--PELYFAGFVTTALQEYVEATLLY 92 (204)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHhhcchHHHHHHHHHHH
Confidence 4455677888888888888777666544432211 22445566666777777888777
No 363
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=20.44 E-value=4.5e+02 Score=23.69 Aligned_cols=37 Identities=27% Similarity=0.136 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCh
Q 004943 568 QLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDI 607 (722)
Q Consensus 568 ~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~ 607 (722)
+--+...+.-|-+.+..||+++|++.+..+ ++..+++
T Consensus 56 ~~ka~~al~~Gl~al~~G~~~~A~k~~~~a---~~~~~~~ 92 (108)
T PF07219_consen 56 RRKAQRALSRGLIALAEGDWQRAEKLLAKA---AKLSDNP 92 (108)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHH---HhcCCCH
Confidence 444566667788889999999999999888 4444444
No 364
>PF13041 PPR_2: PPR repeat family
Probab=20.22 E-value=1.8e+02 Score=21.89 Aligned_cols=26 Identities=19% Similarity=0.169 Sum_probs=22.6
Q ss_pred HhhHHHHHhhCCHHHHHHHHHHHHHH
Q 004943 412 ENKVAVELTRSGFVEAQEALVQMKNW 437 (722)
Q Consensus 412 e~Lg~~~l~~g~~~eA~~~l~~Al~l 437 (722)
+-+...++..|++++|.+.++++.+.
T Consensus 7 n~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 7 NTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 45678899999999999999999963
No 365
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=20.21 E-value=3e+02 Score=30.81 Aligned_cols=62 Identities=16% Similarity=0.187 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHH-HHHHHHHHHHHHhCCChHHH
Q 004943 529 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLV-SQYLTILGNLALALHDTVQA 590 (722)
Q Consensus 529 ~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~-a~~L~~LG~~~~a~g~~~qA 590 (722)
...-+...|.-++.+++++.|.+.|.+|..++-...|..... ..+|++-|..++..++.+..
T Consensus 40 ~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~ 102 (400)
T KOG4563|consen 40 TLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQ 102 (400)
T ss_pred HHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788889999999999999999999999998878785554 48899999998887755543
Done!