Query 004943
Match_columns 722
No_of_seqs 165 out of 180
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 10:33:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004943.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004943hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulq_A Response regulator aspa 99.9 2.1E-19 7E-24 193.9 38.1 268 343-645 102-373 (383)
2 4a1s_A PINS, partner of inscut 99.9 5.7E-20 2E-24 198.1 33.3 280 343-652 85-384 (411)
3 3sf4_A G-protein-signaling mod 99.9 3.2E-19 1.1E-23 190.2 38.1 260 343-632 86-368 (406)
4 3sf4_A G-protein-signaling mod 99.9 1.7E-19 5.9E-24 192.3 35.1 276 343-648 46-344 (406)
5 3ro2_A PINS homolog, G-protein 99.9 1.3E-19 4.5E-24 186.3 32.5 273 343-645 42-337 (338)
6 3ro2_A PINS homolog, G-protein 99.8 1.7E-18 5.7E-23 178.0 32.8 272 343-646 4-298 (338)
7 4a1s_A PINS, partner of inscut 99.8 2.3E-18 7.7E-23 185.6 33.8 272 342-645 46-337 (411)
8 3q15_A PSP28, response regulat 99.8 2.6E-18 8.9E-23 185.4 30.0 269 343-646 100-371 (378)
9 1hz4_A MALT regulatory protein 99.8 1.2E-16 4.1E-21 170.8 29.7 273 343-644 52-326 (373)
10 3ulq_A Response regulator aspa 99.7 7.3E-16 2.5E-20 166.0 28.8 213 408-627 103-319 (383)
11 1hz4_A MALT regulatory protein 99.7 1.9E-15 6.5E-20 161.5 27.2 271 340-644 10-286 (373)
12 3nf1_A KLC 1, kinesin light ch 99.7 4.8E-15 1.6E-19 151.9 27.9 233 408-641 27-308 (311)
13 1w3b_A UDP-N-acetylglucosamine 99.7 3.8E-14 1.3E-18 152.0 34.7 387 8-626 2-388 (388)
14 3q15_A PSP28, response regulat 99.7 3.6E-15 1.2E-19 160.8 26.1 220 408-635 101-327 (378)
15 3nf1_A KLC 1, kinesin light ch 99.7 8.4E-15 2.9E-19 150.0 27.3 235 343-603 26-310 (311)
16 3gw4_A Uncharacterized protein 99.7 4.3E-15 1.5E-19 143.6 22.5 196 419-625 3-201 (203)
17 2xpi_A Anaphase-promoting comp 99.7 9E-14 3.1E-18 157.1 36.3 231 353-640 348-579 (597)
18 2ifu_A Gamma-SNAP; membrane fu 99.7 6.7E-15 2.3E-19 155.0 25.0 213 419-638 2-222 (307)
19 2ifu_A Gamma-SNAP; membrane fu 99.7 4.2E-15 1.4E-19 156.6 23.1 244 355-627 2-248 (307)
20 3edt_B KLC 2, kinesin light ch 99.7 6.7E-15 2.3E-19 148.0 23.6 221 418-639 11-280 (283)
21 1w3b_A UDP-N-acetylglucosamine 99.7 1.6E-13 5.6E-18 147.0 35.5 226 351-639 142-367 (388)
22 3edt_B KLC 2, kinesin light ch 99.7 7.9E-15 2.7E-19 147.5 23.5 220 354-600 11-281 (283)
23 3fp2_A TPR repeat-containing p 99.7 1E-13 3.6E-18 153.9 34.6 243 343-643 242-494 (537)
24 2xpi_A Anaphase-promoting comp 99.6 8.8E-13 3E-17 149.0 39.2 455 5-640 84-545 (597)
25 1qqe_A Vesicular transport pro 99.6 3E-14 1E-18 148.9 22.7 225 340-594 33-263 (292)
26 3gw4_A Uncharacterized protein 99.6 7.1E-14 2.4E-18 134.9 22.9 170 407-582 25-198 (203)
27 2gw1_A Mitochondrial precursor 99.6 1.1E-12 3.9E-17 144.2 35.5 241 343-641 236-479 (514)
28 2gw1_A Mitochondrial precursor 99.6 2.5E-12 8.6E-17 141.4 35.6 207 347-604 273-482 (514)
29 1qqe_A Vesicular transport pro 99.6 1.7E-13 5.9E-18 143.1 23.0 210 412-629 41-255 (292)
30 4eqf_A PEX5-related protein; a 99.6 1.2E-13 4.2E-18 146.5 22.1 238 348-643 69-313 (365)
31 1fch_A Peroxisomal targeting s 99.6 3.9E-13 1.3E-17 141.8 24.3 239 349-641 69-360 (368)
32 3uq3_A Heat shock protein STI1 99.5 2.7E-12 9.2E-17 127.6 27.6 233 345-643 6-239 (258)
33 3u4t_A TPR repeat-containing p 99.5 5E-13 1.7E-17 135.0 22.1 239 348-640 7-250 (272)
34 3fp2_A TPR repeat-containing p 99.5 1.7E-11 5.8E-16 136.0 35.5 249 348-640 199-457 (537)
35 3hym_B Cell division cycle pro 99.5 6.8E-13 2.3E-17 136.9 21.3 231 352-639 64-298 (330)
36 4eqf_A PEX5-related protein; a 99.5 5.3E-13 1.8E-17 141.6 20.9 242 346-634 101-350 (365)
37 2qfc_A PLCR protein; TPR, HTH, 99.5 1.7E-12 5.8E-17 135.1 22.9 194 411-609 78-275 (293)
38 3hym_B Cell division cycle pro 99.5 2.2E-12 7.5E-17 133.1 22.8 234 350-640 28-265 (330)
39 4b4t_Q 26S proteasome regulato 99.5 3.5E-12 1.2E-16 138.3 25.4 237 354-609 14-254 (434)
40 3u3w_A Transcriptional activat 99.5 1.2E-12 4.2E-17 136.2 20.5 193 412-609 79-275 (293)
41 2y4t_A DNAJ homolog subfamily 99.5 1.2E-10 4E-15 126.5 35.6 259 347-640 97-358 (450)
42 3ieg_A DNAJ homolog subfamily 99.5 1.8E-11 6.1E-16 127.3 27.7 258 346-640 73-335 (359)
43 3cv0_A Peroxisome targeting si 99.5 8.3E-12 2.8E-16 128.6 24.5 235 347-635 24-310 (327)
44 3ro3_A PINS homolog, G-protein 99.5 4.9E-12 1.7E-16 115.6 20.1 155 448-606 7-164 (164)
45 1ouv_A Conserved hypothetical 99.5 1.8E-11 6.2E-16 124.9 26.0 220 346-640 8-251 (273)
46 4g1t_A Interferon-induced prot 99.4 3.3E-11 1.1E-15 132.1 29.1 162 351-559 220-401 (472)
47 3ieg_A DNAJ homolog subfamily 99.4 2.7E-11 9.2E-16 125.9 26.3 248 346-640 39-301 (359)
48 2pl2_A Hypothetical conserved 99.4 1.9E-12 6.6E-17 129.2 16.8 193 411-637 8-211 (217)
49 3ro3_A PINS homolog, G-protein 99.4 1E-11 3.5E-16 113.5 20.2 160 481-644 3-162 (164)
50 2qfc_A PLCR protein; TPR, HTH, 99.4 3.6E-11 1.2E-15 125.0 26.2 193 454-649 79-275 (293)
51 2pl2_A Hypothetical conserved 99.4 4.3E-12 1.5E-16 126.6 16.7 195 346-598 7-212 (217)
52 4g1t_A Interferon-induced prot 99.4 3.3E-11 1.1E-15 132.1 24.6 261 347-639 54-362 (472)
53 2y4t_A DNAJ homolog subfamily 99.4 6.8E-11 2.3E-15 128.3 26.6 241 343-640 25-286 (450)
54 1fch_A Peroxisomal targeting s 99.4 2.5E-11 8.4E-16 127.9 22.2 218 346-606 100-365 (368)
55 4b4t_Q 26S proteasome regulato 99.4 5.6E-11 1.9E-15 128.8 23.7 226 415-644 11-249 (434)
56 3u3w_A Transcriptional activat 99.3 1.5E-10 5.2E-15 120.3 24.8 187 456-646 81-272 (293)
57 3uq3_A Heat shock protein STI1 99.3 9.5E-11 3.3E-15 116.3 21.9 216 346-619 40-255 (258)
58 4abn_A Tetratricopeptide repea 99.3 1.1E-11 3.8E-16 139.0 15.5 225 359-637 76-318 (474)
59 2ho1_A Type 4 fimbrial biogene 99.3 1E-10 3.5E-15 116.8 20.6 201 408-639 37-237 (252)
60 2q7f_A YRRB protein; TPR, prot 99.3 1.4E-11 4.8E-16 121.7 13.9 203 342-601 21-223 (243)
61 2xm6_A Protein corresponding t 99.3 2.3E-08 7.8E-13 111.5 41.3 200 356-622 235-451 (490)
62 3vtx_A MAMA; tetratricopeptide 99.3 9.5E-11 3.3E-15 112.0 18.9 164 411-601 8-171 (184)
63 2vq2_A PILW, putative fimbrial 99.3 3E-10 1E-14 110.2 22.2 200 409-638 9-209 (225)
64 2ho1_A Type 4 fimbrial biogene 99.3 1.3E-10 4.4E-15 116.0 20.1 204 343-601 36-239 (252)
65 2q7f_A YRRB protein; TPR, prot 99.3 4.8E-11 1.6E-15 117.8 15.9 201 407-640 22-222 (243)
66 4gyw_A UDP-N-acetylglucosamine 99.3 4.7E-11 1.6E-15 141.2 18.2 171 407-604 8-178 (723)
67 3u4t_A TPR repeat-containing p 99.3 9.4E-11 3.2E-15 118.2 17.6 205 348-601 41-251 (272)
68 2xm6_A Protein corresponding t 99.3 3.1E-08 1.1E-12 110.4 39.9 210 357-641 200-433 (490)
69 3cv0_A Peroxisome targeting si 99.3 4.6E-10 1.6E-14 115.5 22.5 217 347-606 58-321 (327)
70 2h6f_A Protein farnesyltransfe 99.3 1.5E-10 5.2E-15 126.8 19.4 219 343-625 96-323 (382)
71 2vq2_A PILW, putative fimbrial 99.2 7.9E-10 2.7E-14 107.2 22.1 203 344-600 8-211 (225)
72 3qky_A Outer membrane assembly 99.2 1.8E-10 6.1E-15 117.0 18.1 209 410-630 17-251 (261)
73 1ouv_A Conserved hypothetical 99.2 1.1E-09 3.7E-14 111.6 23.9 188 410-640 8-215 (273)
74 1xnf_A Lipoprotein NLPI; TPR, 99.2 2.2E-10 7.5E-15 115.2 17.6 231 353-640 14-244 (275)
75 4gyw_A UDP-N-acetylglucosamine 99.2 2.4E-10 8.2E-15 135.2 19.7 170 449-643 8-177 (723)
76 3vtx_A MAMA; tetratricopeptide 99.2 8E-10 2.7E-14 105.5 19.7 166 450-640 5-170 (184)
77 4i17_A Hypothetical protein; T 99.2 1.7E-10 6E-15 114.3 15.1 161 410-587 9-169 (228)
78 3qky_A Outer membrane assembly 99.1 1.7E-09 5.8E-14 109.7 18.4 203 346-590 17-251 (261)
79 4abn_A Tetratricopeptide repea 99.1 9.1E-10 3.1E-14 123.4 17.0 196 344-594 102-315 (474)
80 1xnf_A Lipoprotein NLPI; TPR, 99.1 9.9E-09 3.4E-13 103.1 22.6 228 343-634 42-269 (275)
81 4i17_A Hypothetical protein; T 99.1 3.4E-09 1.2E-13 104.9 18.1 161 450-627 7-169 (228)
82 2yhc_A BAMD, UPF0169 lipoprote 99.0 2.1E-08 7.2E-13 100.0 21.5 177 410-598 6-211 (225)
83 3as5_A MAMA; tetratricopeptide 99.0 5.3E-09 1.8E-13 97.7 15.9 170 407-603 7-176 (186)
84 3n71_A Histone lysine methyltr 99.0 9E-09 3.1E-13 116.4 19.7 151 412-601 313-465 (490)
85 3mkr_A Coatomer subunit epsilo 99.0 2.3E-08 7.9E-13 104.6 20.8 194 409-636 66-260 (291)
86 2h6f_A Protein farnesyltransfe 99.0 4.6E-09 1.6E-13 115.0 15.9 194 410-636 99-301 (382)
87 2pzi_A Probable serine/threoni 99.0 1.1E-08 3.7E-13 120.0 19.6 200 355-605 402-603 (681)
88 3as5_A MAMA; tetratricopeptide 99.0 2.2E-08 7.5E-13 93.5 17.1 168 449-641 7-174 (186)
89 3urz_A Uncharacterized protein 98.9 2.1E-08 7.1E-13 99.1 14.7 175 347-559 7-186 (208)
90 3mkr_A Coatomer subunit epsilo 98.9 1.7E-07 5.7E-12 98.1 22.0 159 411-601 104-265 (291)
91 3n71_A Histone lysine methyltr 98.9 5.8E-08 2E-12 109.8 19.2 112 529-640 350-464 (490)
92 2yhc_A BAMD, UPF0169 lipoprote 98.8 2.1E-07 7.1E-12 92.7 19.7 177 450-637 4-210 (225)
93 2ond_A Cleavage stimulation fa 98.8 3.7E-07 1.3E-11 95.3 21.3 191 424-641 80-271 (308)
94 3rjv_A Putative SEL1 repeat pr 98.8 3.1E-07 1E-11 91.1 19.4 159 411-600 21-197 (212)
95 3qou_A Protein YBBN; thioredox 98.8 5.3E-08 1.8E-12 101.4 14.2 166 411-601 120-285 (287)
96 2pzi_A Probable serine/threoni 98.8 1.9E-08 6.6E-13 117.8 12.1 195 419-644 402-602 (681)
97 2ooe_A Cleavage stimulation fa 98.8 8.6E-05 2.9E-09 83.3 40.9 194 421-642 292-494 (530)
98 3rjv_A Putative SEL1 repeat pr 98.7 3.7E-07 1.3E-11 90.5 18.8 176 426-640 4-197 (212)
99 4ga2_A E3 SUMO-protein ligase 98.7 2.7E-08 9.4E-13 93.3 9.5 147 413-586 2-149 (150)
100 2r5s_A Uncharacterized protein 98.7 7.2E-08 2.5E-12 92.2 10.8 163 412-600 10-173 (176)
101 2vsy_A XCC0866; transferase, g 98.7 1.3E-07 4.5E-12 107.5 14.8 157 421-604 2-161 (568)
102 3qou_A Protein YBBN; thioredox 98.7 5.2E-07 1.8E-11 93.8 17.2 166 451-639 118-283 (287)
103 2vsy_A XCC0866; transferase, g 98.6 1.7E-07 5.9E-12 106.5 14.4 154 357-560 2-158 (568)
104 3urz_A Uncharacterized protein 98.6 7.3E-07 2.5E-11 87.9 17.0 166 451-640 5-186 (208)
105 1hh8_A P67PHOX, NCF-2, neutrop 98.6 2.1E-07 7.3E-12 90.3 12.2 137 449-601 5-151 (213)
106 2ond_A Cleavage stimulation fa 98.6 1.4E-06 4.7E-11 91.1 19.0 172 412-605 103-275 (308)
107 1hh8_A P67PHOX, NCF-2, neutrop 98.6 6.7E-07 2.3E-11 86.8 15.4 140 407-560 5-151 (213)
108 4gcn_A Protein STI-1; structur 98.6 6.5E-07 2.2E-11 81.5 14.3 105 528-639 6-111 (127)
109 2fo7_A Synthetic consensus TPR 98.6 1.2E-06 4.2E-11 76.6 15.5 129 411-559 4-132 (136)
110 2fo7_A Synthetic consensus TPR 98.6 1.7E-06 6E-11 75.6 15.9 131 451-600 2-132 (136)
111 1a17_A Serine/threonine protei 98.6 1.5E-06 5.1E-11 80.1 16.1 142 448-606 11-152 (166)
112 4f3v_A ESX-1 secretion system 98.6 5E-07 1.7E-11 94.8 14.2 199 415-641 14-238 (282)
113 4ga2_A E3 SUMO-protein ligase 98.6 1.4E-07 4.8E-12 88.4 8.7 147 455-626 2-149 (150)
114 4gcn_A Protein STI-1; structur 98.6 1.3E-06 4.4E-11 79.5 14.8 71 530-600 42-112 (127)
115 1a17_A Serine/threonine protei 98.5 1.6E-06 5.6E-11 79.9 15.1 141 407-566 12-152 (166)
116 3qww_A SET and MYND domain-con 98.4 2.1E-06 7.2E-11 95.5 15.9 104 541-644 309-415 (433)
117 3e4b_A ALGK; tetratricopeptide 98.4 2E-07 6.8E-12 103.7 7.6 215 351-638 10-278 (452)
118 2r5s_A Uncharacterized protein 98.4 2.3E-06 7.7E-11 81.6 14.0 163 453-639 9-172 (176)
119 3gyz_A Chaperone protein IPGC; 98.4 2.7E-06 9.2E-11 80.7 13.6 101 346-484 38-138 (151)
120 2hr2_A Hypothetical protein; a 98.4 7.5E-06 2.5E-10 78.7 16.4 117 407-562 10-134 (159)
121 3qwp_A SET and MYND domain-con 98.4 6.2E-06 2.1E-10 91.6 17.6 95 529-623 328-425 (429)
122 3qww_A SET and MYND domain-con 98.4 3.7E-06 1.3E-10 93.6 15.4 76 529-604 339-415 (433)
123 1p5q_A FKBP52, FK506-binding p 98.4 4.9E-06 1.7E-10 88.7 15.6 155 422-600 127-294 (336)
124 1p5q_A FKBP52, FK506-binding p 98.3 6.4E-06 2.2E-10 87.8 16.1 142 407-560 146-295 (336)
125 3qwp_A SET and MYND domain-con 98.3 4.4E-06 1.5E-10 92.8 14.6 118 461-583 298-425 (429)
126 4gco_A Protein STI-1; structur 98.3 6.4E-06 2.2E-10 74.9 13.2 100 528-640 11-110 (126)
127 4gco_A Protein STI-1; structur 98.3 6.5E-06 2.2E-10 74.9 13.1 99 449-559 12-110 (126)
128 3gyz_A Chaperone protein IPGC; 98.3 1.2E-05 4.3E-10 76.0 15.5 100 449-560 35-134 (151)
129 4f3v_A ESX-1 secretion system 98.3 1.7E-05 5.9E-10 83.1 17.8 202 354-600 16-237 (282)
130 3upv_A Heat shock protein STI1 98.3 2.1E-05 7.2E-10 70.0 15.6 120 449-581 3-122 (126)
131 3e4b_A ALGK; tetratricopeptide 98.3 1.1E-05 3.9E-10 89.4 16.8 184 412-639 180-386 (452)
132 2fbn_A 70 kDa peptidylprolyl i 98.2 3.3E-06 1.1E-10 81.8 9.2 165 450-631 4-176 (198)
133 3upv_A Heat shock protein STI1 98.2 3.3E-05 1.1E-09 68.7 14.7 119 487-621 4-122 (126)
134 3rkv_A Putative peptidylprolyl 98.2 1.5E-05 5E-10 74.6 12.9 106 528-640 9-126 (162)
135 3rkv_A Putative peptidylprolyl 98.2 1.4E-05 4.8E-10 74.7 12.8 102 449-559 10-126 (162)
136 1elr_A TPR2A-domain of HOP; HO 98.2 2.9E-05 1E-09 67.8 14.0 105 529-640 3-108 (131)
137 2vyi_A SGTA protein; chaperone 98.2 2.6E-05 9E-10 67.9 13.2 120 343-503 11-130 (131)
138 3sz7_A HSC70 cochaperone (SGT) 98.1 5E-05 1.7E-09 71.1 15.4 100 449-560 10-109 (164)
139 2lni_A Stress-induced-phosphop 98.1 2.2E-05 7.6E-10 69.1 12.3 119 343-502 15-133 (133)
140 2hr2_A Hypothetical protein; a 98.1 4.5E-05 1.5E-09 73.2 15.0 115 528-643 9-134 (159)
141 3sz7_A HSC70 cochaperone (SGT) 98.1 2.9E-05 1E-09 72.7 13.5 99 407-516 10-108 (164)
142 2fbn_A 70 kDa peptidylprolyl i 98.1 2.2E-05 7.5E-10 75.9 12.6 155 413-591 9-176 (198)
143 2vgx_A Chaperone SYCD; alterna 98.1 2.8E-05 9.6E-10 72.6 12.9 97 409-516 22-118 (148)
144 2lni_A Stress-induced-phosphop 98.1 3.2E-05 1.1E-09 68.0 12.6 120 448-586 14-133 (133)
145 2e2e_A Formate-dependent nitri 98.1 9E-06 3.1E-10 76.8 9.4 122 419-560 21-145 (177)
146 1elr_A TPR2A-domain of HOP; HO 98.1 5.2E-05 1.8E-09 66.2 13.7 71 531-601 39-109 (131)
147 2c2l_A CHIP, carboxy terminus 98.1 1.3E-05 4.4E-10 83.0 10.9 100 450-561 4-103 (281)
148 2xev_A YBGF; tetratricopeptide 98.1 0.0001 3.5E-09 65.1 15.3 102 452-559 4-105 (129)
149 2vgx_A Chaperone SYCD; alterna 98.1 2.4E-05 8.2E-10 73.0 11.7 99 346-482 23-121 (148)
150 2vyi_A SGTA protein; chaperone 98.1 4.3E-05 1.5E-09 66.6 12.5 119 408-546 12-130 (131)
151 2xcb_A PCRH, regulatory protei 98.0 5.9E-05 2E-09 69.1 13.6 97 347-481 21-117 (142)
152 2xcb_A PCRH, regulatory protei 98.0 4.5E-05 1.5E-09 69.9 12.7 96 410-516 20-115 (142)
153 2xev_A YBGF; tetratricopeptide 98.0 4.6E-05 1.6E-09 67.4 12.3 100 412-516 6-105 (129)
154 2c2l_A CHIP, carboxy terminus 98.0 1.3E-05 4.4E-10 83.0 9.9 96 409-515 5-100 (281)
155 2ooe_A Cleavage stimulation fa 98.0 0.00023 7.8E-09 79.8 20.6 170 412-603 325-495 (530)
156 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 3.2E-05 1.1E-09 86.0 13.5 128 449-592 267-406 (457)
157 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 7E-05 2.4E-09 83.3 15.9 134 407-552 267-407 (457)
158 3q49_B STIP1 homology and U bo 98.0 7.3E-05 2.5E-09 66.8 13.1 101 449-561 8-108 (137)
159 1xi4_A Clathrin heavy chain; a 98.0 0.00036 1.2E-08 86.4 22.9 180 411-637 1108-1306(1630)
160 2dba_A Smooth muscle cell asso 98.0 6.8E-05 2.3E-09 67.4 12.4 102 449-559 27-128 (148)
161 2l6j_A TPR repeat-containing p 98.0 9.3E-06 3.2E-10 69.8 6.3 99 529-634 3-101 (111)
162 1na0_A Designed protein CTPR3; 98.0 0.00012 4E-09 63.1 13.2 115 410-544 11-125 (125)
163 1ihg_A Cyclophilin 40; ppiase 98.0 7E-05 2.4E-09 81.2 14.3 128 449-592 222-362 (370)
164 1na0_A Designed protein CTPR3; 97.9 0.00012 4.2E-09 63.0 13.2 116 345-501 10-125 (125)
165 3q49_B STIP1 homology and U bo 97.9 4.9E-05 1.7E-09 67.9 10.8 101 344-482 9-109 (137)
166 2e2e_A Formate-dependent nitri 97.9 4.4E-05 1.5E-09 72.0 10.8 127 461-606 21-150 (177)
167 1xi4_A Clathrin heavy chain; a 97.9 0.0073 2.5E-07 75.0 31.9 158 453-632 1198-1376(1630)
168 1ihg_A Cyclophilin 40; ppiase 97.9 0.0001 3.5E-09 79.8 14.4 134 407-552 222-363 (370)
169 2kck_A TPR repeat; tetratricop 97.9 5.8E-05 2E-09 64.1 9.6 96 412-516 10-106 (112)
170 1wao_1 Serine/threonine protei 97.8 1.1E-05 3.8E-10 90.4 5.7 177 408-604 6-201 (477)
171 2dba_A Smooth muscle cell asso 97.8 0.00017 5.7E-09 64.8 12.3 102 529-640 27-128 (148)
172 1hxi_A PEX5, peroxisome target 97.8 5.6E-05 1.9E-09 68.0 8.9 93 350-480 23-115 (121)
173 1elw_A TPR1-domain of HOP; HOP 97.8 0.0003 1E-08 60.0 12.8 97 409-516 5-101 (118)
174 1hxi_A PEX5, peroxisome target 97.8 8.1E-05 2.8E-09 66.9 9.4 93 412-515 21-113 (121)
175 1elw_A TPR1-domain of HOP; HOP 97.8 0.00016 5.4E-09 61.8 10.8 98 529-639 3-100 (118)
176 3k9i_A BH0479 protein; putativ 97.8 2.8E-05 9.5E-10 68.8 6.0 93 356-483 2-94 (117)
177 2if4_A ATFKBP42; FKBP-like, al 97.8 4.4E-05 1.5E-09 81.4 8.4 136 449-600 178-328 (338)
178 3ma5_A Tetratricopeptide repea 97.8 0.0002 6.7E-09 61.9 11.0 85 530-625 7-91 (100)
179 2if4_A ATFKBP42; FKBP-like, al 97.8 4.6E-05 1.6E-09 81.3 8.4 142 407-560 178-329 (338)
180 2l6j_A TPR repeat-containing p 97.7 0.0001 3.5E-09 63.2 8.9 90 408-505 4-96 (111)
181 3k9i_A BH0479 protein; putativ 97.7 6.2E-05 2.1E-09 66.5 7.7 89 462-559 2-90 (117)
182 1wao_1 Serine/threonine protei 97.7 0.00011 3.9E-09 82.2 10.3 120 351-511 13-134 (477)
183 2kck_A TPR repeat; tetratricop 97.6 0.00011 3.9E-09 62.2 7.8 98 348-481 10-108 (112)
184 1b89_A Protein (clathrin heavy 97.6 4.2E-05 1.4E-09 84.9 6.0 219 347-632 64-303 (449)
185 1b89_A Protein (clathrin heavy 97.5 0.0001 3.4E-09 81.9 7.2 177 412-644 36-247 (449)
186 1na3_A Designed protein CTPR2; 97.5 0.00058 2E-08 56.2 10.0 82 409-501 10-91 (91)
187 2kat_A Uncharacterized protein 97.5 0.00081 2.8E-08 58.7 11.1 81 530-617 19-99 (115)
188 1na3_A Designed protein CTPR2; 97.4 0.0011 3.8E-08 54.4 10.3 84 529-625 8-91 (91)
189 3dra_A Protein farnesyltransfe 97.4 0.047 1.6E-06 57.6 25.3 239 343-643 34-290 (306)
190 3txn_A 26S proteasome regulato 97.3 0.028 9.6E-07 61.5 23.7 193 409-607 20-217 (394)
191 3ma5_A Tetratricopeptide repea 97.3 0.00073 2.5E-08 58.2 8.1 65 410-482 9-73 (100)
192 2kat_A Uncharacterized protein 97.2 0.002 6.7E-08 56.2 10.5 92 468-572 3-94 (115)
193 3mv2_B Coatomer subunit epsilo 97.2 0.0067 2.3E-07 64.3 16.3 168 413-599 105-281 (310)
194 3mv2_B Coatomer subunit epsilo 97.2 0.01 3.5E-07 62.9 17.5 173 349-559 105-282 (310)
195 1klx_A Cysteine rich protein B 97.0 0.003 1E-07 58.0 10.2 111 421-559 8-126 (138)
196 1zu2_A Mitochondrial import re 96.6 0.0021 7.3E-08 61.4 5.8 66 409-482 37-123 (158)
197 3ly7_A Transcriptional activat 96.6 0.11 3.8E-06 56.1 19.5 147 449-614 195-350 (372)
198 4b4t_P 26S proteasome regulato 96.5 0.45 1.6E-05 52.6 24.9 218 420-642 28-249 (445)
199 1klx_A Cysteine rich protein B 96.5 0.024 8.3E-07 51.8 12.3 110 464-600 9-126 (138)
200 4b4t_P 26S proteasome regulato 96.5 0.67 2.3E-05 51.2 25.9 191 411-609 59-256 (445)
201 2v5f_A Prolyl 4-hydroxylase su 96.4 0.015 5.2E-07 50.6 9.8 70 531-600 6-75 (104)
202 3txn_A 26S proteasome regulato 96.4 0.3 1E-05 53.3 22.0 185 451-643 20-213 (394)
203 3u64_A Protein TP_0956; tetrat 96.3 0.073 2.5E-06 55.8 15.5 138 482-639 115-268 (301)
204 3q7a_A Farnesyltransferase alp 96.3 0.17 5.7E-06 54.4 18.7 246 343-644 55-335 (349)
205 1zu2_A Mitochondrial import re 96.2 0.0073 2.5E-07 57.7 6.9 87 461-559 13-120 (158)
206 3ly7_A Transcriptional activat 96.2 0.078 2.7E-06 57.4 15.5 142 487-640 196-339 (372)
207 2kc7_A BFR218_protein; tetratr 96.2 0.0088 3E-07 50.2 6.6 62 413-482 5-67 (99)
208 3u64_A Protein TP_0956; tetrat 96.0 0.42 1.4E-05 50.1 19.5 122 473-604 140-273 (301)
209 3dra_A Protein farnesyltransfe 95.7 0.34 1.2E-05 50.9 17.6 217 351-614 74-298 (306)
210 2kc7_A BFR218_protein; tetratr 95.7 0.037 1.2E-06 46.3 8.2 61 534-601 4-65 (99)
211 2v5f_A Prolyl 4-hydroxylase su 95.6 0.11 3.8E-06 45.0 11.2 79 412-494 9-87 (104)
212 3bee_A Putative YFRE protein; 95.5 0.034 1.2E-06 47.9 7.3 67 530-603 6-75 (93)
213 4e6h_A MRNA 3'-END-processing 94.6 3 0.0001 48.6 22.9 174 414-602 384-572 (679)
214 3ffl_A Anaphase-promoting comp 94.2 0.61 2.1E-05 44.7 13.0 104 532-635 22-146 (167)
215 4e6h_A MRNA 3'-END-processing 93.6 1 3.5E-05 52.6 16.2 190 427-639 328-532 (679)
216 1pc2_A Mitochondria fission pr 93.3 0.29 9.9E-06 46.3 9.0 88 465-559 13-100 (152)
217 3dss_A Geranylgeranyl transfer 93.2 7.2 0.00025 41.3 20.7 170 424-623 90-284 (331)
218 1dce_A Protein (RAB geranylger 93.1 2.3 7.9E-05 48.3 17.8 138 424-588 89-243 (567)
219 3ffl_A Anaphase-promoting comp 92.3 1.2 4.3E-05 42.5 11.9 116 499-622 32-166 (167)
220 4g26_A Pentatricopeptide repea 91.9 1.8 6.1E-05 48.5 14.7 165 412-598 30-202 (501)
221 1dce_A Protein (RAB geranylger 91.7 1.7 5.7E-05 49.5 14.2 179 415-626 35-241 (567)
222 4g26_A Pentatricopeptide repea 91.6 1.8 6.1E-05 48.5 14.2 165 453-636 30-200 (501)
223 3bee_A Putative YFRE protein; 90.0 0.85 2.9E-05 38.9 7.5 62 413-482 11-75 (93)
224 4b4t_R RPN7, 26S proteasome re 89.9 2.8 9.5E-05 45.9 13.4 105 351-484 138-242 (429)
225 4b4t_R RPN7, 26S proteasome re 88.2 1.9 6.4E-05 47.3 10.6 107 492-605 136-242 (429)
226 3mkq_A Coatomer beta'-subunit; 88.2 16 0.00053 42.0 19.0 28 580-607 745-778 (814)
227 3mkq_A Coatomer beta'-subunit; 87.0 16 0.00055 41.9 18.1 131 418-587 662-799 (814)
228 3dss_A Geranylgeranyl transfer 86.4 9.5 0.00032 40.3 14.3 162 412-600 33-222 (331)
229 1nzn_A CGI-135 protein, fissio 86.3 2.5 8.5E-05 38.6 8.4 95 465-569 16-110 (126)
230 4b4t_S RPN3, 26S proteasome re 85.9 13 0.00045 41.7 15.7 215 401-628 135-378 (523)
231 1y8m_A FIS1; mitochondria, unk 85.5 3.7 0.00013 38.3 9.2 76 487-570 39-114 (144)
232 3o48_A Mitochondria fission 1 84.8 3.3 0.00011 38.2 8.4 75 487-569 40-114 (134)
233 3q7a_A Farnesyltransferase alp 83.8 25 0.00087 37.3 16.3 173 422-627 68-258 (349)
234 1pc2_A Mitochondria fission pr 81.2 6.1 0.00021 37.2 9.0 65 531-600 33-100 (152)
235 4ady_A RPN2, 26S proteasome re 78.4 43 0.0015 40.4 17.1 206 408-639 376-588 (963)
236 2ff4_A Probable regulatory pro 77.5 22 0.00076 38.0 13.4 100 458-566 123-241 (388)
237 4h7y_A Dual specificity protei 73.7 18 0.00063 34.1 9.8 99 6-116 14-124 (161)
238 2uy1_A Cleavage stimulation fa 73.6 1E+02 0.0035 33.8 17.9 182 425-637 196-380 (493)
239 4h7y_A Dual specificity protei 67.2 38 0.0013 31.9 10.3 84 395-493 54-138 (161)
240 2wpv_A GET4, UPF0363 protein Y 66.4 1.3E+02 0.0044 31.4 19.7 90 550-642 113-219 (312)
241 2ff4_A Probable regulatory pro 65.9 25 0.00085 37.7 10.4 96 541-642 126-236 (388)
242 3mkq_B Coatomer subunit alpha; 65.0 99 0.0034 29.6 15.0 102 417-556 14-115 (177)
243 4b4t_O 26S proteasome regulato 60.9 51 0.0018 35.3 11.7 67 414-480 133-199 (393)
244 4b4t_S RPN3, 26S proteasome re 59.8 2.2E+02 0.0076 31.8 19.5 226 337-591 131-381 (523)
245 1ya0_A SMG-7 transcript varian 57.2 26 0.00089 39.1 8.7 62 409-478 153-214 (497)
246 3mkq_B Coatomer subunit alpha; 51.0 62 0.0021 31.0 9.1 62 412-473 38-112 (177)
247 4ady_A RPN2, 26S proteasome re 49.5 4.2E+02 0.014 31.9 17.9 184 412-623 459-642 (963)
248 3lpz_A GET4 (YOR164C homolog); 47.6 2.7E+02 0.0093 29.3 14.8 91 550-643 115-219 (336)
249 3re2_A Predicted protein; meni 46.2 1.4E+02 0.0047 32.0 11.3 80 549-650 276-355 (472)
250 2br9_A 14-3-3E, 14-3-3 protein 43.1 2.6E+02 0.009 27.8 16.0 76 529-604 126-206 (234)
251 3u84_A Menin; MLL, JUND, ledgf 37.6 1.9E+02 0.0065 31.5 10.9 54 549-604 298-351 (550)
252 3lpz_A GET4 (YOR164C homolog); 36.5 2.5E+02 0.0086 29.5 11.8 103 532-636 57-161 (336)
253 2ijq_A Hypothetical protein; s 35.4 55 0.0019 30.9 5.8 74 533-607 35-111 (161)
254 2rpa_A Katanin P60 ATPase-cont 34.6 24 0.00083 29.3 2.9 37 354-398 22-58 (78)
255 2ijq_A Hypothetical protein; s 34.4 78 0.0027 29.9 6.7 67 415-481 39-106 (161)
256 2r9g_A AAA ATPase, central reg 33.9 1.3E+02 0.0046 29.3 8.4 88 108-202 20-119 (204)
257 3spa_A Mtrpol, DNA-directed RN 33.9 1.7E+02 0.0059 35.7 11.0 63 408-476 127-191 (1134)
258 4gq4_A Menin; tumor suppressor 33.2 2.1E+02 0.0073 31.1 10.5 55 548-604 282-336 (489)
259 3bge_A Predicted ATPase; struc 32.9 1.2E+02 0.0042 29.5 8.0 88 108-202 13-113 (201)
260 3t5v_B Nuclear mRNA export pro 32.1 4.7E+02 0.016 28.6 13.6 74 488-562 177-253 (455)
261 2uy1_A Cleavage stimulation fa 32.0 5.2E+02 0.018 28.0 20.3 189 415-643 220-416 (493)
262 4gns_B Protein CSD3, chitin bi 31.9 4.3E+02 0.015 30.9 13.9 90 421-513 298-397 (754)
263 4fhn_B Nucleoporin NUP120; pro 31.3 3.3E+02 0.011 33.2 13.5 122 335-473 836-961 (1139)
264 3t5v_B Nuclear mRNA export pro 31.2 4.1E+02 0.014 29.0 13.0 130 364-502 139-280 (455)
265 1ya0_A SMG-7 transcript varian 30.6 88 0.003 34.8 7.5 61 532-599 154-214 (497)
266 2npm_A 14-3-3 domain containin 30.3 4.4E+02 0.015 26.6 16.3 74 529-603 152-230 (260)
267 4gns_B Protein CSD3, chitin bi 30.3 6.3E+02 0.022 29.5 15.0 54 415-476 344-397 (754)
268 1nzn_A CGI-135 protein, fissio 30.2 2.8E+02 0.0096 24.8 9.5 65 531-600 36-103 (126)
269 2cwy_A Hypothetical protein TT 29.2 1.1E+02 0.0036 26.1 6.1 70 535-607 6-75 (94)
270 3o48_A Mitochondria fission 1 27.3 3.3E+02 0.011 24.8 9.4 63 413-479 45-107 (134)
271 3ctd_A Putative ATPase, AAA fa 27.3 1.1E+02 0.0039 30.0 6.7 87 108-202 41-140 (213)
272 3t5x_A PCI domain-containing p 26.0 1.4E+02 0.0047 28.9 7.2 53 450-502 14-68 (203)
273 1o9d_A 14-3-3-like protein C; 25.4 5.4E+02 0.018 26.0 16.7 72 529-602 131-209 (260)
274 2wpv_A GET4, UPF0363 protein Y 25.3 3.7E+02 0.013 27.9 10.7 103 532-636 55-159 (312)
275 3spa_A Mtrpol, DNA-directed RN 25.1 2.7E+02 0.0094 34.0 10.7 89 356-477 139-228 (1134)
276 1y8m_A FIS1; mitochondria, unk 24.6 4.1E+02 0.014 24.4 11.9 63 413-479 44-106 (144)
277 2crb_A Nuclear receptor bindin 23.5 1.6E+02 0.0055 25.3 6.0 62 351-428 22-83 (97)
278 4fhn_B Nucleoporin NUP120; pro 23.3 2.6E+02 0.0088 34.2 10.5 100 532-635 844-962 (1139)
279 2cwy_A Hypothetical protein TT 23.2 1.5E+02 0.0051 25.2 6.0 61 415-480 8-69 (94)
280 3ubw_A 14-3-3E, 14-3-3 protein 23.2 5.9E+02 0.02 25.7 16.5 57 546-603 172-231 (261)
281 4b4t_O 26S proteasome regulato 22.7 6.9E+02 0.024 26.3 12.9 101 460-561 86-200 (393)
282 1qsa_A Protein (soluble lytic 22.1 4.6E+02 0.016 29.8 11.6 128 414-558 220-347 (618)
283 3ax2_A Mitochondrial import re 20.0 1.1E+02 0.0039 24.9 4.3 32 453-484 20-51 (73)
No 1
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.88 E-value=2.1e-19 Score=193.92 Aligned_cols=268 Identities=9% Similarity=0.011 Sum_probs=230.5
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhC
Q 004943 343 YALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRS 422 (722)
Q Consensus 343 ~aLvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g 422 (722)
-...|++.+.++...|++++|.+++++|++. +.+.++..+ .+.++.++|.++...|
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~--------------------~a~~~~~lg~~~~~~~ 157 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESK----LIFVKDRIE--------------------KAEFFFKMSESYYYMK 157 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT----GGGCCCHHH--------------------HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH----HhhCCCHHH--------------------HHHHHHHHHHHHHHcC
Confidence 3457788899999999999999999999999 666665443 5666788999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCc-hhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcc---hhHHHHHHHHHHHHHH
Q 004943 423 GFVEAQEALVQMKNWFIRFPT-ILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES---KSMQAMCHAYAAVSYF 498 (722)
Q Consensus 423 ~~~eA~~~l~~Al~l~~~~~d-~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~---~~~~A~allnla~v~l 498 (722)
++++|++.+.+|++++...++ . ...+.+++++|.++..+|++++|+.+|.+|+.+... ....+.++.|+|.+|.
T Consensus 158 ~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~ 235 (383)
T 3ulq_A 158 QTYFSMDYARQAYEIYKEHEAYN--IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKN 235 (383)
T ss_dssp CHHHHHHHHHHHHHHHHTCSTTH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCccch--HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 999999999999999999987 3 356789999999999999999999999999987653 4478889999999999
Q ss_pred hcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 004943 499 CIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILG 578 (722)
Q Consensus 499 ~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG 578 (722)
..|+++.+...++.+..++...++ ....+.+++.+|.++..+|++++|..++++|++++. ..+++...+. +..||
T Consensus 236 ~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~-~~~l~ 310 (383)
T 3ulq_A 236 SQSQYEDAIPYFKRAIAVFEESNI---LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ-KAGDVIYLSE-FEFLK 310 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTC---GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHTCHHHHHH-HHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHhhcc---chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-HcCCHHHHHH-HHHHH
Confidence 999998866665555554443332 113578999999999999999999999999999986 6899777776 78899
Q ss_pred HHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHHHHHHHh
Q 004943 579 NLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDELQ 645 (722)
Q Consensus 579 ~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~l~ 645 (722)
.++...|+. +.+..|+..+++.++.+....+...|+.+|...|++++|.++++.+....+++.
T Consensus 311 ~~~~~~~~~----~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i~ 373 (383)
T 3ulq_A 311 SLYLSGPDE----EAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQ 373 (383)
T ss_dssp HHHTSSCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSCS
T ss_pred HHHhCCCcH----HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh
Confidence 999999997 788899999999999999999999999999999999999999999988877654
No 2
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.88 E-value=5.7e-20 Score=198.09 Aligned_cols=280 Identities=15% Similarity=0.079 Sum_probs=242.2
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhC
Q 004943 343 YALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRS 422 (722)
Q Consensus 343 ~aLvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g 422 (722)
.+-+|..-+.++...|++++|.++++++++. .++.++.+. .+.++.++|.++...|
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~--------------------~~~~~~~l~~~~~~~g 140 (411)
T 4a1s_A 85 LSAIYSQLGNAYFYLGDYNKAMQYHKHDLTL----AKSMNDRLG--------------------EAKSSGNLGNTLKVMG 140 (411)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----HHHTTCHHH--------------------HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----HHHccCchH--------------------HHHHHHHHHHHHHHCC
Confidence 4556667778888899999999999999999 666665333 4566678999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCC-----------------HHHHHHHHHHHHHhhcc---
Q 004943 423 GFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGC-----------------YSEAAFHYVEAAKITES--- 482 (722)
Q Consensus 423 ~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~-----------------~~~Al~~f~~AL~l~~~--- 482 (722)
++++|.+.+.++++++...++. ...+.+++.+|.++...|+ +++|+.+|.+++.+...
T Consensus 141 ~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~ 218 (411)
T 4a1s_A 141 RFDEAAICCERHLTLARQLGDR--LSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGD 218 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHHHhhch--HHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999998875 3467889999999999999 99999999999887643
Q ss_pred hhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 004943 483 KSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHN 562 (722)
Q Consensus 483 ~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~ 562 (722)
....+.++.++|.+|...|+++.+...++.+..+.... .+....+.++..+|.++..+|++++|..++++++++..
T Consensus 219 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~- 294 (411)
T 4a1s_A 219 RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF---GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAV- 294 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc---CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH-
Confidence 34778899999999999999988666665555543332 22334677999999999999999999999999999976
Q ss_pred hcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHHHHH
Q 004943 563 HMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLD 642 (722)
Q Consensus 563 ~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~ 642 (722)
..++....+.++..+|.++...|++++|...++.++.++.+.++......++..|+.+|...|++++|.++++.+.+..+
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 295 ELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHhh
Q 004943 643 ELQKRLADAY 652 (722)
Q Consensus 643 ~l~~~~~~a~ 652 (722)
++..+...+.
T Consensus 375 ~~~~~~~~~~ 384 (411)
T 4a1s_A 375 XXXXXXXXXX 384 (411)
T ss_dssp HHHHHHHHHH
T ss_pred hcccchhhhh
Confidence 8877766554
No 3
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.87 E-value=3.2e-19 Score=190.17 Aligned_cols=260 Identities=17% Similarity=0.079 Sum_probs=221.6
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhC
Q 004943 343 YALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRS 422 (722)
Q Consensus 343 ~aLvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g 422 (722)
.+-++..-+.++...|++++|.+++++++++ ..+.++... .+.++.++|.++...|
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~--------------------~~~~~~~l~~~~~~~g 141 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDI----SRELNDKVG--------------------EARALYNLGNVYHAKG 141 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----HHHHTCHHH--------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----HHhcccccc--------------------hHHHHHHHHHHHHHcC
Confidence 3445566677778889999999999999999 555554332 4566678999999999
Q ss_pred C--------------------HHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcc
Q 004943 423 G--------------------FVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES 482 (722)
Q Consensus 423 ~--------------------~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~ 482 (722)
+ +++|++.+.++++++...++. ...+.+++.+|.++...|++++|...|++++.....
T Consensus 142 ~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 219 (406)
T 3sf4_A 142 KSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDR--AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 219 (406)
T ss_dssp HTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHH
T ss_pred CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCc--HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Confidence 9 999999999999999999876 456789999999999999999999999999987654
Q ss_pred ---hhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 004943 483 ---KSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQI 559 (722)
Q Consensus 483 ---~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~l 559 (722)
....+.++.++|.+|...|+++.+...++.+..+....+ +....+.++..+|.++...|++++|..++++++++
T Consensus 220 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 220 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK---DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCc---CchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 347778999999999999999886666655554433332 23346789999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhH
Q 004943 560 AHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEME 632 (722)
Q Consensus 560 a~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e 632 (722)
.. ..++....+.++..+|.++...|++++|..+++.|+.++++.++.+....++..|+.++...|++..+..
T Consensus 297 ~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 368 (406)
T 3sf4_A 297 AQ-ELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNN 368 (406)
T ss_dssp HH-HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC--
T ss_pred HH-hcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHH
Confidence 76 6999999999999999999999999999999999999999999999999999999999999999855443
No 4
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.87 E-value=1.7e-19 Score=192.28 Aligned_cols=276 Identities=15% Similarity=0.060 Sum_probs=239.6
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhC
Q 004943 343 YALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRS 422 (722)
Q Consensus 343 ~aLvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g 422 (722)
.+-+|..-+.++...|++++|.+++++++.+ .++.++.+. .+.++.++|.++...|
T Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~--------------------~~~~~~~la~~~~~~g 101 (406)
T 3sf4_A 46 LSAIYSQLGNAYFYLHDYAKALEYHHHDLTL----ARTIGDQLG--------------------EAKASGNLGNTLKVLG 101 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----HHHTTCHHH--------------------HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH----HHhccccHH--------------------HHHHHHHHHHHHHHcC
Confidence 4556667788888899999999999999999 666665443 4556678999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCC--------------------HHHHHHHHHHHHHhhcc
Q 004943 423 GFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGC--------------------YSEAAFHYVEAAKITES 482 (722)
Q Consensus 423 ~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~--------------------~~~Al~~f~~AL~l~~~ 482 (722)
++++|++.+.++++++...++. ...+.+++.+|.++...|+ +++|+.+|.+++.+...
T Consensus 102 ~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~ 179 (406)
T 3sf4_A 102 NFDEAIVCCQRHLDISRELNDK--VGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTA 179 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcccc--cchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998876 4567899999999999999 99999999999887544
Q ss_pred ---hhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 004943 483 ---KSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQI 559 (722)
Q Consensus 483 ---~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~l 559 (722)
....+.++.++|.+|...|+++.+...++.+..++... .+....+.++..+|.++...|++++|..++++++++
T Consensus 180 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 256 (406)
T 3sf4_A 180 LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF---GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLL 256 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc---CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 44778899999999999999987666665555444433 223346789999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHH
Q 004943 560 AHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRK 639 (722)
Q Consensus 560 a~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~ 639 (722)
.. ..+++...+.++..+|.++...|++++|...++.|+.++.+.++.+....++..++.+|...|++++|.++++.+.+
T Consensus 257 ~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 257 AR-QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HH-hCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 76 58999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHH
Q 004943 640 KLDELQKRL 648 (722)
Q Consensus 640 ~~~~l~~~~ 648 (722)
.........
T Consensus 336 ~~~~~~~~~ 344 (406)
T 3sf4_A 336 ISREVGDKS 344 (406)
T ss_dssp HHHHTTCHH
T ss_pred HHHHhcCCc
Confidence 988875443
No 5
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.87 E-value=1.3e-19 Score=186.29 Aligned_cols=273 Identities=15% Similarity=0.057 Sum_probs=232.1
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhC
Q 004943 343 YALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRS 422 (722)
Q Consensus 343 ~aLvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g 422 (722)
.+-+|..-+.++...|++++|.+++++++.. ..+.++.+. .+.++.++|.++...|
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~--------------------~~~~~~~l~~~~~~~g 97 (338)
T 3ro2_A 42 LSAIYSQLGNAYFYLHDYAKALEYHHHDLTL----ARTIGDQLG--------------------EAKASGNLGNTLKVLG 97 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----HHHHTCHHH--------------------HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----hhcccccHH--------------------HHHHHHHHHHHHHHcc
Confidence 4556666677888899999999999999999 555665333 4556678999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCC--------------------HHHHHHHHHHHHHhhcc
Q 004943 423 GFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGC--------------------YSEAAFHYVEAAKITES 482 (722)
Q Consensus 423 ~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~--------------------~~~Al~~f~~AL~l~~~ 482 (722)
++++|.+.+.++++++...++. ...+.+++.+|.++...|+ +++|+.+|.+++...+.
T Consensus 98 ~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~ 175 (338)
T 3ro2_A 98 NFDEAIVCCQRHLDISRELNDK--VGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTA 175 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCc--hHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998886 3467889999999999999 99999999999876544
Q ss_pred ---hhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 004943 483 ---KSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQI 559 (722)
Q Consensus 483 ---~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~l 559 (722)
....+.++.++|.+|...|+++.+...++.+..+.... .+....+.++..+|.++...|++++|..++++++++
T Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 252 (338)
T 3ro2_A 176 LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF---GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLL 252 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44777889999999999999987666655554443332 223346789999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHH
Q 004943 560 AHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRK 639 (722)
Q Consensus 560 a~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~ 639 (722)
.. ..+++...+.++..+|.++...|++++|...++.++.++.+.+++.....++..|+.+|...|++++|.++++.+..
T Consensus 253 ~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 253 AR-QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HH-hhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 76 58999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHh
Q 004943 640 KLDELQ 645 (722)
Q Consensus 640 ~~~~l~ 645 (722)
..+++.
T Consensus 332 ~~~~~~ 337 (338)
T 3ro2_A 332 ISREVG 337 (338)
T ss_dssp C-----
T ss_pred HHHhhc
Confidence 877653
No 6
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.85 E-value=1.7e-18 Score=178.04 Aligned_cols=272 Identities=15% Similarity=0.048 Sum_probs=230.0
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhC
Q 004943 343 YALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRS 422 (722)
Q Consensus 343 ~aLvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g 422 (722)
-+...++.+......|++++|.++++++++. ..++ ..+ .+.++..+|.++...|
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~------~~~~------------~~~--------~~~~~~~l~~~~~~~g 57 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQV------GTED------------LKT--------LSAIYSQLGNAYFYLH 57 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCSC------------HHH--------HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhh------Cccc------------HHH--------HHHHHHHHHHHHHHcC
Confidence 3456677788999999999999999999987 1111 111 3455577899999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcc---hhHHHHHHHHHHHHHHh
Q 004943 423 GFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES---KSMQAMCHAYAAVSYFC 499 (722)
Q Consensus 423 ~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~---~~~~A~allnla~v~l~ 499 (722)
++++|++.+.+++++....++. ...+.+++.+|.++...|++++|+.+|.+++..... ....+.++.++|.+|..
T Consensus 58 ~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 135 (338)
T 3ro2_A 58 DYAKALEYHHHDLTLARTIGDQ--LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA 135 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhccccc--HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 9999999999999999998876 446788999999999999999999999999987654 34678899999999999
Q ss_pred cCC--------------------hhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 004943 500 IGD--------------------AESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQI 559 (722)
Q Consensus 500 ~G~--------------------~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~l 559 (722)
.|+ ++.+...++....++...+ +....+.++..+|.++...|++++|..++++++++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 212 (338)
T 3ro2_A 136 KGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALG---DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 212 (338)
T ss_dssp HHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 999 6654444444333333222 23346789999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHH
Q 004943 560 AHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRK 639 (722)
Q Consensus 560 a~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~ 639 (722)
.. ..++....+.++..+|.++...|++++|.+.++.++.+..+.+++....+++..++.+|...|++++|.++++.+..
T Consensus 213 ~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 291 (338)
T 3ro2_A 213 AK-EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 291 (338)
T ss_dssp HH-HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HH-hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 76 58899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHhH
Q 004943 640 KLDELQK 646 (722)
Q Consensus 640 ~~~~l~~ 646 (722)
.......
T Consensus 292 ~~~~~~~ 298 (338)
T 3ro2_A 292 IAQELKD 298 (338)
T ss_dssp HHHHHTC
T ss_pred HHHhcCC
Confidence 8877644
No 7
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.84 E-value=2.3e-18 Score=185.57 Aligned_cols=272 Identities=14% Similarity=0.032 Sum_probs=230.0
Q ss_pred hHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhh
Q 004943 342 VYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTR 421 (722)
Q Consensus 342 l~aLvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~ 421 (722)
..+..++.-+..+...|++++|.++++++++. ..++ ..+ .+.++.++|.++...
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~------~~~~------------~~~--------~~~~~~~lg~~~~~~ 99 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQA------GTED------------LRT--------LSAIYSQLGNAYFYL 99 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCSC------------HHH--------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh------cccC------------hhH--------HHHHHHHHHHHHHHC
Confidence 34555566788888999999999999999987 1111 111 344557789999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcc---hhHHHHHHHHHHHHHH
Q 004943 422 SGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES---KSMQAMCHAYAAVSYF 498 (722)
Q Consensus 422 g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~---~~~~A~allnla~v~l 498 (722)
|++++|++.+.+++++++..++. ...+.+++.+|.++..+|++++|+.+|++++..... ....+.++.++|.+|.
T Consensus 100 g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 177 (411)
T 4a1s_A 100 GDYNKAMQYHKHDLTLAKSMNDR--LGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYH 177 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccCc--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Confidence 99999999999999999998876 456789999999999999999999999999987654 4477889999999999
Q ss_pred hcCC-----------------hhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 004943 499 CIGD-----------------AESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAH 561 (722)
Q Consensus 499 ~~G~-----------------~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~ 561 (722)
..|+ ++.+...+..+..+....+ +....+.++..+|.++...|++++|..++++++++..
T Consensus 178 ~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 254 (411)
T 4a1s_A 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLG---DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAR 254 (411)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 9999 6654444443333333222 2234678999999999999999999999999999976
Q ss_pred HhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHHHH
Q 004943 562 NHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKL 641 (722)
Q Consensus 562 ~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~ 641 (722)
..++....+.++..+|.++...|++++|.+.++.++.++.+.++.....+++..++.+|...|++++|.++++......
T Consensus 255 -~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 333 (411)
T 4a1s_A 255 -EFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIA 333 (411)
T ss_dssp -HHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -hcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 5889999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHh
Q 004943 642 DELQ 645 (722)
Q Consensus 642 ~~l~ 645 (722)
....
T Consensus 334 ~~~~ 337 (411)
T 4a1s_A 334 QELG 337 (411)
T ss_dssp HHHT
T ss_pred HHCC
Confidence 7764
No 8
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.83 E-value=2.6e-18 Score=185.42 Aligned_cols=269 Identities=11% Similarity=-0.004 Sum_probs=227.5
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhC
Q 004943 343 YALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRS 422 (722)
Q Consensus 343 ~aLvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g 422 (722)
-...|+..|++....|++++|..++++|+++ ....++.+. .+.++.++|.++...|
T Consensus 100 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~--------------------~a~~~~~lg~~y~~~~ 155 (378)
T 3q15_A 100 KYYSLFFRGMYEFDQKEYVEAIGYYREAEKE----LPFVSDDIE--------------------KAEFHFKVAEAYYHMK 155 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT----GGGCCCHHH--------------------HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH----HhhCCChHH--------------------HHHHHHHHHHHHHHcC
Confidence 3446788899999999999999999999999 666665433 5667788999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhc---chhHHHHHHHHHHHHHHh
Q 004943 423 GFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITE---SKSMQAMCHAYAAVSYFC 499 (722)
Q Consensus 423 ~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~---~~~~~A~allnla~v~l~ 499 (722)
++++|++.+.++++++...++.. ...+.+++++|.++..+|++++|+.+|.+|+.+.+ +....+.++.|+|.+|..
T Consensus 156 ~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~ 234 (378)
T 3q15_A 156 QTHVSMYHILQALDIYQNHPLYS-IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDR 234 (378)
T ss_dssp CHHHHHHHHHHHHHHHHTSTTCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhCCCch-hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988621 24678999999999999999999999999998775 344788999999999999
Q ss_pred cCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004943 500 IGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGN 579 (722)
Q Consensus 500 ~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~ 579 (722)
.|+++.+...+..+..++...++ .. .+.+++.+|.++..+|++++|..++++|++++. ..+++.... .+..|+.
T Consensus 235 ~~~~~~A~~~~~~al~~~~~~~~---~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~-~~~~l~~ 308 (378)
T 3q15_A 235 SGDDQMAVEHFQKAAKVSREKVP---DL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHIT-ARSHKFYKE-LFLFLQA 308 (378)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHCG---GG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-TTCCSCHHH-HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhCC---hh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-HcCCHHHHH-HHHHHHH
Confidence 99998766665555554443322 21 378999999999999999999999999999976 688866665 5689999
Q ss_pred HHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHHHHHHHhH
Q 004943 580 LALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDELQK 646 (722)
Q Consensus 580 ~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~l~~ 646 (722)
++...|+. +.+..|+...++.++.+........|+.+|...|++++|.++|+.+....+.+..
T Consensus 309 ly~~~~~~----~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~ 371 (378)
T 3q15_A 309 VYKETVDE----RKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILK 371 (378)
T ss_dssp HHSSSCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCcH----HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhc
Confidence 99988876 6778888888889988888888999999999999999999999999998888654
No 9
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.77 E-value=1.2e-16 Score=170.84 Aligned_cols=273 Identities=12% Similarity=0.027 Sum_probs=217.4
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhC
Q 004943 343 YALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRS 422 (722)
Q Consensus 343 ~aLvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g 422 (722)
.+.++..-+..+...|++++|.+++++++++ ..+.|+... .+..+.++|.++..+|
T Consensus 52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~--------------------~~~~~~~la~~~~~~G 107 (373)
T 1hz4_A 52 RIVATSVLGEVLHCKGELTRSLALMQQTEQM----ARQHDVWHY--------------------ALWSLIQQSEILFAQG 107 (373)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----HHHTTCHHH--------------------HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH----HHhcCcHHH--------------------HHHHHHHHHHHHHHCC
Confidence 4455556677788889999999999999999 666664332 4556678999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchh--HHHHHHHHHHHHHHhc
Q 004943 423 GFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS--MQAMCHAYAAVSYFCI 500 (722)
Q Consensus 423 ~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~--~~A~allnla~v~l~~ 500 (722)
++++|.+.+++++++.++.++......+.+++++|.++...|++++|+.+|.+++......+ ....++.++|.++...
T Consensus 108 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~ 187 (373)
T 1hz4_A 108 FLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLAR 187 (373)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHc
Confidence 99999999999999999876542234567889999999999999999999999998876432 3457888999999999
Q ss_pred CChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 004943 501 GDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNL 580 (722)
Q Consensus 501 G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~ 580 (722)
|+++.+...++....+....+.. ....+......+.++..+|++++|..+++++++.. .++.......+..+|.+
T Consensus 188 g~~~~A~~~l~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 188 GDLDNARSQLNRLENLLGNGKYH--SDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPE---FANNHFLQGQWRNIARA 262 (373)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCCC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCC---CTTCGGGHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhccCcc--hhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCC---CCcchhhHHHHHHHHHH
Confidence 99988777776665553332211 11123333456666889999999999999998763 22323333467889999
Q ss_pred HHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHHHHHHH
Q 004943 581 ALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDEL 644 (722)
Q Consensus 581 ~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~l 644 (722)
+...|++++|.+.++.++..+.+.+++.....+...++.++...|++++|.+.++.+.......
T Consensus 263 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~ 326 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRT 326 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999888877899999999999999999999999998887753
No 10
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.74 E-value=7.3e-16 Score=166.04 Aligned_cols=213 Identities=12% Similarity=0.069 Sum_probs=184.8
Q ss_pred HHHHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcch----
Q 004943 408 MQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK---- 483 (722)
Q Consensus 408 a~lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~---- 483 (722)
...+..+|.++...|+|++|++.+.+++++++..|+. ...+.+++.+|.++..+|++++|+.+|.+|+.+....
T Consensus 103 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 180 (383)
T 3ulq_A 103 YYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDR--IEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN 180 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCH--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch
Confidence 3344568999999999999999999999999999886 4467899999999999999999999999999886543
Q ss_pred hHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 004943 484 SMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNH 563 (722)
Q Consensus 484 ~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~ 563 (722)
...+.++.++|.+|...|+++.+...+..+..+....+ +....+.+++++|.++..+|++++|..++++|+++.. .
T Consensus 181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~-~ 256 (383)
T 3ulq_A 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK---QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFE-E 256 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-h
Confidence 46789999999999999999886665555555444332 2335788999999999999999999999999999976 5
Q ss_pred cCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCc
Q 004943 564 MGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDR 627 (722)
Q Consensus 564 ~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~ 627 (722)
.++....+.++..||.++...|++++|.+.++.|+.++++.+|+..... ...|+.+|...|++
T Consensus 257 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~l~~~~~~~~~~ 319 (383)
T 3ulq_A 257 SNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSE-FEFLKSLYLSGPDE 319 (383)
T ss_dssp TTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHTSSCCH
T ss_pred hccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHhCCCcH
Confidence 8886667999999999999999999999999999999999999988776 67799999999985
No 11
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.71 E-value=1.9e-15 Score=161.50 Aligned_cols=271 Identities=9% Similarity=-0.061 Sum_probs=210.3
Q ss_pred chhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHH
Q 004943 340 SAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVEL 419 (722)
Q Consensus 340 ~~l~aLvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l 419 (722)
..+.+-+.++-+......|++++|..++++++.. . ...+ ..+ .+.++.++|.++.
T Consensus 10 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~----~---~~~~----------~~~--------~~~~~~~l~~~~~ 64 (373)
T 1hz4_A 10 DTMHAEFNALRAQVAINDGNPDEAERLAKLALEE----L---PPGW----------FYS--------RIVATSVLGEVLH 64 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----C---CTTC----------HHH--------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc----C---CCCc----------hhH--------HHHHHHHHHHHHH
Confidence 3445667777788888999999999999999887 2 1111 011 3455678899999
Q ss_pred hhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcch-----hHHHHHHHHHH
Q 004943 420 TRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK-----SMQAMCHAYAA 494 (722)
Q Consensus 420 ~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~-----~~~A~allnla 494 (722)
.+|++++|.+.+.+++++..+.++. .....+++.+|.++...|++++|+.+|++++...+.. ...+.+..++|
T Consensus 65 ~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 142 (373)
T 1hz4_A 65 CKGELTRSLALMQQTEQMARQHDVW--HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRA 142 (373)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHhcCcH--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHH
Confidence 9999999999999999999999886 4467889999999999999999999999999877543 35778889999
Q ss_pred HHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCh-HHHHHH
Q 004943 495 VSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNL-QLVSQY 573 (722)
Q Consensus 495 ~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~-~l~a~~ 573 (722)
.+|...|+++++...++....+....++. ..+.++..+|.++..+|++++|..++++++++.. ..+++ ...+..
T Consensus 143 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~-~~~~~~~~~~~~ 217 (373)
T 1hz4_A 143 QLLWAWARLDEAEASARSGIEVLSSYQPQ----QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLG-NGKYHSDWISNA 217 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTTTSCGG----GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT-TSCCCHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHhhccCcH----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh-ccCcchhHHHHH
Confidence 99999999988666666655554433221 1456788999999999999999999999999965 45553 233333
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHHHHHHH
Q 004943 574 LTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDEL 644 (722)
Q Consensus 574 L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~l 644 (722)
...++.++...|++++|...++.++.... ++.+....+...+++++...|++++|.+.++......+..
T Consensus 218 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~ 286 (373)
T 1hz4_A 218 NKVRVIYWQMTGDKAAAANWLRHTAKPEF--ANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL 286 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHSCCCCC--TTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCCCCCC--CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Confidence 34566779999999999999999886432 1212223356788999999999999999999887776653
No 12
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.70 E-value=4.8e-15 Score=151.85 Aligned_cols=233 Identities=18% Similarity=0.072 Sum_probs=189.7
Q ss_pred HHHHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcc-----
Q 004943 408 MQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES----- 482 (722)
Q Consensus 408 a~lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~----- 482 (722)
+.++.++|.++...|++++|++.+.++++++...+.......+.+++.+|.++...|++++|+..|.+++...+.
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 445567899999999999999999999999988641111345788999999999999999999999999988743
Q ss_pred hhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 004943 483 KSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHN 562 (722)
Q Consensus 483 ~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~ 562 (722)
......++.++|.+|...|+++.+...++.+...+..... .+....+.+++.+|.++...|++++|..++++++++..+
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG-KDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3577888999999999999998765555555444322200 111236778999999999999999999999999999764
Q ss_pred hc-CChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcC------------------------------------
Q 004943 563 HM-GNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLY------------------------------------ 605 (722)
Q Consensus 563 ~~-gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~------------------------------------ 605 (722)
.. ++....+.++..+|.++...|++++|.+.++.++.++.+.+
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 22 34677889999999999999999999999999999876632
Q ss_pred -------ChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHHHH
Q 004943 606 -------DIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKL 641 (722)
Q Consensus 606 -------D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~ 641 (722)
+.+....++..|+.+|...|++++|.++++.+.+..
T Consensus 266 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 266 WYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 446678899999999999999999999998887654
No 13
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.69 E-value=3.8e-14 Score=151.97 Aligned_cols=387 Identities=13% Similarity=0.043 Sum_probs=256.6
Q ss_pred HHHhHHHHHhhccHhHHhHHHHHHhccCCCCChHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhhhhh
Q 004943 8 LWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFELKCR 87 (722)
Q Consensus 8 L~~lAe~~~~~~~i~~ai~CLeA~l~~~~~l~p~~EA~~rLrla~iL~e~T~N~~~A~thLeka~~l~~~~~~~~dlk~~ 87 (722)
++.+|...-..+++..|+.+++.+++..| ...+ +..-+|.++ ....+.++|...+++++.. -|. ...
T Consensus 2 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~p---~~~~--~~~~l~~~~-~~~~~~~~a~~~~~~a~~~---~p~----~~~ 68 (388)
T 1w3b_A 2 PMELAHREYQAGDFEAAERHCMQLWRQEP---DNTG--VLLLLSSIH-FQCRRLDRSAHFSTLAIKQ---NPL----LAE 68 (388)
T ss_dssp CCTHHHHHHHHTCHHHHHHHHHHHHHHCT---TCHH--HHHHHHHHH-HHTTCHHHHHHHHHHHHHH---CTT----CHH
T ss_pred hhhHHHHHHHCCCHHHHHHHHHHHHHhCC---CCHH--HHHHHHHHH-HHcCCHHHHHHHHHHHHhc---CCC----chH
Confidence 56678888888899999999998887665 2222 344555554 4467788888888887542 222 234
Q ss_pred hhHHHHHHHHHcCCCchHHHHHHHHHHHhhhhhcccccchhHHHHhhHHHhHhhhcCChHHHHHHHHhHHHHHhhcCChh
Q 004943 88 TFSLLSQCYHLVGAIPPQKLILYKALDLTSSASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYVCATEISYPD 167 (722)
Q Consensus 88 ~~~lLa~~y~~~~~~~~~k~~l~k~i~~~~~~~~~~~~~~W~~~f~f~la~~~~~~~d~~~A~~~L~~g~~~A~~~~~~~ 167 (722)
++..|+.+|...|....+.....++++..- ... ...+.++.++...|++..|++.++......- ..
T Consensus 69 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-------~~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p----~~ 134 (388)
T 1w3b_A 69 AYSNLGNVYKERGQLQEAIEHYRHALRLKP-------DFI---DGYINLAAALVAAGDMEGAVQAYVSALQYNP----DL 134 (388)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-------TCH---HHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT----TC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCc-------chH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----Cc
Confidence 667788888888877666667777765421 111 1234567778788888888877776443210 00
Q ss_pred HHHHHHHHHHHHHhcccCChhHHHHHHHhhhHHhhhcCccccccccchhhhhhHHHHHHHhhhhhhhhhhhhhhhHHHHH
Q 004943 168 LQMFFATAILHVHLMQWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIFYRLRICDYKNAAHHVDNLDAAM 247 (722)
Q Consensus 168 ~~v~f~l~~~~~~L~~~~~~~~v~~~l~~~~~~~~~i~~~~~~~~~g~~~~~e~l~i~~~l~ic~~~~~~~~v~~~~~~~ 247 (722)
..+...+...+ ...|+ .+.++
T Consensus 135 ~~~~~~l~~~~-------------------------------------------------------~~~g~----~~~A~ 155 (388)
T 1w3b_A 135 YCVRSDLGNLL-------------------------------------------------------KALGR----LEEAK 155 (388)
T ss_dssp THHHHHHHHHH-------------------------------------------------------HTTSC----HHHHH
T ss_pred HHHHHHHHHHH-------------------------------------------------------HHccC----HHHHH
Confidence 01111111100 01111 11111
Q ss_pred HHhHHHHHHHHHHhhhhHHhhhhcCCCCCChhhhHHHHHHHHHHHHHHHhcccCcCcccccCCccccCCCccccCccccc
Q 004943 248 KADKQKMQEIQQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNARQAWGDKLVL 327 (722)
Q Consensus 248 ~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~lq~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~ 327 (722)
+.+++.++. + | .
T Consensus 156 -----------------------------------------~~~~~al~~------~---p-------------~----- 167 (388)
T 1w3b_A 156 -----------------------------------------ACYLKAIET------Q---P-------------N----- 167 (388)
T ss_dssp -----------------------------------------HHHHHHHHH------C---T-------------T-----
T ss_pred -----------------------------------------HHHHHHHHh------C---C-------------C-----
Confidence 011111111 0 0 0
Q ss_pred CCCCCcccccCcchhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHH
Q 004943 328 APSPMDGEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLL 407 (722)
Q Consensus 328 ~~~~~~~~WLpk~~l~aLvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~ 407 (722)
.+.+|..-+.++...|++++|.++++++++. ++..
T Consensus 168 ---------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---------~p~~--------------------- 202 (388)
T 1w3b_A 168 ---------------FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL---------DPNF--------------------- 202 (388)
T ss_dssp ---------------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---------CTTC---------------------
T ss_pred ---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---------CCCc---------------------
Confidence 1223444466677889999999999999887 1111
Q ss_pred HHHHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHH
Q 004943 408 MQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQA 487 (722)
Q Consensus 408 a~lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A 487 (722)
...+.++|.++...|++++|++.+.+++.+ .|+. +.+++.+|.++...|++++|+..|++++....+. .
T Consensus 203 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~ 271 (388)
T 1w3b_A 203 LDAYINLGNVLKEARIFDRAVAAYLRALSL---SPNH-----AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF---P 271 (388)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHHHHHHHH---CTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC---H
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CcCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---H
Confidence 223356799999999999999999999886 3432 4568889999999999999999999988765443 2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCh
Q 004943 488 MCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNL 567 (722)
Q Consensus 488 ~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~ 567 (722)
.++.++|.++...|+++++...++.+..... . ...+++.+|.++...|++++|...+++++++.
T Consensus 272 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-----~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------- 335 (388)
T 1w3b_A 272 DAYCNLANALKEKGSVAEAEDCYNTALRLCP-----T----HADSLNNLANIKREQGNIEEAVRLYRKALEVF------- 335 (388)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-----T----CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-----c----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------
Confidence 3578889999999998887666665544411 1 23568889999999999999999999998762
Q ss_pred HHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCC
Q 004943 568 QLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGD 626 (722)
Q Consensus 568 ~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd 626 (722)
.....++..||.++...|++++|.+.++.++.+. ++ ...++..|+.++...|+
T Consensus 336 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~---p~---~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 336 PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS---PT---FADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC---TT---CHHHHHHHHHHHHHTCC
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CC---CHHHHHhHHHHHHHccC
Confidence 1224578899999999999999999999998642 22 35677888888887764
No 14
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.69 E-value=3.6e-15 Score=160.76 Aligned_cols=220 Identities=13% Similarity=-0.024 Sum_probs=185.9
Q ss_pred HHHHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcch----
Q 004943 408 MQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK---- 483 (722)
Q Consensus 408 a~lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~---- 483 (722)
...+..+|..+...|++++|++.+.+|+++....++. ...+.+++.+|.++..+|+++.|+.+|.+|+.+....
T Consensus 101 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~ 178 (378)
T 3q15_A 101 YYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDD--IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYS 178 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCCh--HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCch
Confidence 3345568999999999999999999999999999886 4578899999999999999999999999999887643
Q ss_pred hHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 004943 484 SMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNH 563 (722)
Q Consensus 484 ~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~ 563 (722)
...+.++.++|.+|...|+++.+...+..+..+.+..+ +....+.+++++|.++..+|++++|..++.+|+++.. .
T Consensus 179 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~-~ 254 (378)
T 3q15_A 179 IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQ---NDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSR-E 254 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-H
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-h
Confidence 36789999999999999999876555555544443332 2335788999999999999999999999999999976 5
Q ss_pred cCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCC---chhHhHHHH
Q 004943 564 MGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGD---RGNEMENDE 635 (722)
Q Consensus 564 ~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd---~~~A~e~~~ 635 (722)
.+++.. +.++..||.++...|++++|...++.|+.++++.+++.... ....|+.+|...|+ ..+|...++
T Consensus 255 ~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~l~~ly~~~~~~~~~~~al~~~~ 327 (378)
T 3q15_A 255 KVPDLL-PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKE-LFLFLQAVYKETVDERKIHDLLSYFE 327 (378)
T ss_dssp HCGGGH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHH-HHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred hCChhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 788666 99999999999999999999999999999999999987655 46889999999888 444444443
No 15
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.69 E-value=8.4e-15 Score=150.03 Aligned_cols=235 Identities=16% Similarity=0.039 Sum_probs=185.6
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhC
Q 004943 343 YALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRS 422 (722)
Q Consensus 343 ~aLvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g 422 (722)
.+-++..-+.++...|++++|.+++++++++ ..+.+.... .. ...++.++|.++...|
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~----~~~~~~~~~---------------~~---~~~~~~~la~~~~~~g 83 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALED----LEKTSGHDH---------------PD---VATMLNILALVYRDQN 83 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----HHHHHCSSS---------------HH---HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----HHHHcCCCC---------------HH---HHHHHHHHHHHHHHCC
Confidence 4455666677788899999999999999999 444431111 00 4455677899999999
Q ss_pred CHHHHHHHHHHHHHHHHhC--CchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcc-----hhHHHHHHHHHHH
Q 004943 423 GFVEAQEALVQMKNWFIRF--PTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES-----KSMQAMCHAYAAV 495 (722)
Q Consensus 423 ~~~eA~~~l~~Al~l~~~~--~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~-----~~~~A~allnla~ 495 (722)
++++|++.+.++++++++. ++. ...+.+++.+|.++...|++++|+..|++++..... ......++.++|.
T Consensus 84 ~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~ 161 (311)
T 3nf1_A 84 KYKDAANLLNDALAIREKTLGKDH--PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLAL 161 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 9999999999999999886 443 345688999999999999999999999999988733 3677888999999
Q ss_pred HHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC----------
Q 004943 496 SYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMG---------- 565 (722)
Q Consensus 496 v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~g---------- 565 (722)
++...|+++.+...++.+...+..... .+....+.+++.+|.++...|++++|..++++++++... .+
T Consensus 162 ~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~ 239 (311)
T 3nf1_A 162 LCQNQGKYEEVEYYYQRALEIYQTKLG-PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHE-REFGSVDDENKP 239 (311)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHTSC-TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-HHHC------CC
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-hcCCCCCcchHH
Confidence 999999998766665555444332210 111235678999999999999999999999999998542 21
Q ss_pred ---------------------------------ChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Q 004943 566 ---------------------------------NLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKK 603 (722)
Q Consensus 566 ---------------------------------d~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkk 603 (722)
+....+.++..||.++...|++++|.+.++.|+.+.++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 240 IWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 34677889999999999999999999999999998653
No 16
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.68 E-value=4.3e-15 Score=143.57 Aligned_cols=196 Identities=11% Similarity=0.098 Sum_probs=159.4
Q ss_pred HhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcc---hhHHHHHHHHHHH
Q 004943 419 LTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES---KSMQAMCHAYAAV 495 (722)
Q Consensus 419 l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~---~~~~A~allnla~ 495 (722)
+..|++++|.+.++.. ...|. ..+.+++.+|.++...|++++|+.+|++++.+.+. ....+.++.++|.
T Consensus 3 ~~~g~~~~A~~~~~~~----~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 74 (203)
T 3gw4_A 3 FEAHDYALAERQAQAL----LAHPA----TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGM 74 (203)
T ss_dssp ----CHHHHHHHHHHH----HTSTT----THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHh----cCChH----HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 5679999999843322 23332 35688999999999999999999999999987764 4478899999999
Q ss_pred HHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 004943 496 SYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLT 575 (722)
Q Consensus 496 v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~ 575 (722)
+|...|+++.+...+.....+++..++ +....+.+++.+|.++...|++++|..+++++++++. ..++....+.++.
T Consensus 75 ~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~ 151 (203)
T 3gw4_A 75 VERMAGNWDAARRCFLEERELLASLPE--DPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQ-QADDQVAIACAFR 151 (203)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCC--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCc--cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-hccchHHHHHHHH
Confidence 999999998766665555555443332 1224788999999999999999999999999999976 6999999999999
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcC
Q 004943 576 ILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLG 625 (722)
Q Consensus 576 ~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~G 625 (722)
.||.++...|++++|.+.++.|+.++++.+|+..+..++..++.+....|
T Consensus 152 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (203)
T 3gw4_A 152 GLGDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHH 201 (203)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC---
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcccchhhccc
Confidence 99999999999999999999999999999999999999999887654443
No 17
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.67 E-value=9e-14 Score=157.09 Aligned_cols=231 Identities=12% Similarity=0.045 Sum_probs=181.8
Q ss_pred hhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHHHHHH
Q 004943 353 LGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALV 432 (722)
Q Consensus 353 ~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~~l~ 432 (722)
++...|++++|.+.++++++. .+.. ..++..+|.++...|++++|.+.+.
T Consensus 348 ~~~~~g~~~~A~~~~~~~~~~---------~~~~---------------------~~~~~~l~~~~~~~g~~~~A~~~~~ 397 (597)
T 2xpi_A 348 SLHESGEKNKLYLISNDLVDR---------HPEK---------------------AVTWLAVGIYYLCVNKISEARRYFS 397 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH---------CTTS---------------------HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhh---------Cccc---------------------HHHHHHHHHHHHHhccHHHHHHHHH
Confidence 344678999999998888755 1111 2223457999999999999999999
Q ss_pred HHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 004943 433 QMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDL 512 (722)
Q Consensus 433 ~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l 512 (722)
+++++ .|+. ..+++.+|..+...|++++|+..|++++....+ ...++.++|.+|...|+++++.+.++.
T Consensus 398 ~~~~~---~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~ 466 (597)
T 2xpi_A 398 KSSTM---DPQF-----GPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG---THLPYLFLGMQHMQLGNILLANEYLQS 466 (597)
T ss_dssp HHHHH---CTTC-----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT---CSHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHh---CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---chHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99885 3332 346888999999999999999999988876443 245667889999999999887777766
Q ss_pred hcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHhCCChHHHH
Q 004943 513 IGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGN-LQLVSQYLTILGNLALALHDTVQAR 591 (722)
Q Consensus 513 ~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd-~~l~a~~L~~LG~~~~a~g~~~qA~ 591 (722)
+..... . ...+++.+|.++...|++++|...+++++++.. ..+. +...+.++..||.++...|++++|.
T Consensus 467 ~~~~~~-----~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~ 536 (597)
T 2xpi_A 467 SYALFQ-----Y----DPLLLNELGVVAFNKSDMQTAINHFQNALLLVK-KTQSNEKPWAATWANLGHAYRKLKMYDAAI 536 (597)
T ss_dssp HHHHCC-----C----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HSCCCSGGGHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhCC-----C----ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhh-ccccchhhHHHHHHHHHHHHHHhcCHHHHH
Confidence 554411 1 125688999999999999999999999999965 3444 3333789999999999999999999
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHHH
Q 004943 592 EILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 640 (722)
Q Consensus 592 ~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~ 640 (722)
+.++.++.+. ++ ...+...|+.+|...|+.++|.+.++...+.
T Consensus 537 ~~~~~~~~~~---p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 537 DALNQGLLLS---TN---DANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHHS---SC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC---CC---ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 9999998864 32 2468889999999999999999988876654
No 18
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.67 E-value=6.7e-15 Score=155.01 Aligned_cols=213 Identities=12% Similarity=0.046 Sum_probs=178.6
Q ss_pred HhhCCHHHHHHHHHHHHHHHHh-----CCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcc---hhHHHHHH
Q 004943 419 LTRSGFVEAQEALVQMKNWFIR-----FPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES---KSMQAMCH 490 (722)
Q Consensus 419 l~~g~~~eA~~~l~~Al~l~~~-----~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~---~~~~A~al 490 (722)
...|++.+|.+.++++...... .|+. ......+...|.++...|++++|...|.+++.+... ....+.++
T Consensus 2 ~~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~--~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~ 79 (307)
T 2ifu_A 2 IAAQKISEAHEHIAKAEKYLKTSFMKWKPDY--DSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAF 79 (307)
T ss_dssp -CHHHHHHHHHHHHHHHHHHCCCSSSCSCCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHccccccCCCCCH--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3578899999999999886553 2342 223455666789999999999999999999987653 34778899
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHH
Q 004943 491 AYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLV 570 (722)
Q Consensus 491 lnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~ 570 (722)
.++|.+|...|+++++...++.+..++...+ +....+.++..+|.++.. |++++|..+|++|+++.. ..|+....
T Consensus 80 ~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g---~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~-~~~~~~~~ 154 (307)
T 2ifu_A 80 EQAGMMLKDLQRMPEAVQYIEKASVMYVENG---TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFE-NEERLRQA 154 (307)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHH-HTTCHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHH-hCCChhHH
Confidence 9999999999999875555555555544433 233567899999999998 999999999999999976 58888888
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHH
Q 004943 571 SQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRR 638 (722)
Q Consensus 571 a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~ 638 (722)
+.+++.+|.++...|++++|...++.++.+..+.++.+....++..++.++...|++++|..+|+.+.
T Consensus 155 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 155 AELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988888899999999999999999999998876
No 19
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.67 E-value=4.2e-15 Score=156.57 Aligned_cols=244 Identities=17% Similarity=0.089 Sum_probs=187.9
Q ss_pred ccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHHHHHHHH
Q 004943 355 RPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQM 434 (722)
Q Consensus 355 ~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~~l~~A 434 (722)
|..|++++|.+++++|.+. ... +... + ..+ |.. -+..++..|.++...|+|++|.+.+.++
T Consensus 2 ~~~~~~~eA~~~~~~a~k~----~~~-~~~~-~-~~~------~~~------A~~~~~~a~~~~~~~g~~~~A~~~~~~a 62 (307)
T 2ifu_A 2 IAAQKISEAHEHIAKAEKY----LKT-SFMK-W-KPD------YDS------AASEYAKAAVAFKNAKQLEQAKDAYLQE 62 (307)
T ss_dssp -CHHHHHHHHHHHHHHHHH----HCC-CSSS-C-SCC------HHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHH----ccc-cccC-C-CCC------HHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3467889999999999887 331 1100 0 001 111 1223355688999999999999999999
Q ss_pred HHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcch---hHHHHHHHHHHHHHHhcCChhHHHHHHH
Q 004943 435 KNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK---SMQAMCHAYAAVSYFCIGDAESSSQAID 511 (722)
Q Consensus 435 l~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~---~~~A~allnla~v~l~~G~~e~a~~aL~ 511 (722)
++++...++. ...+.++..+|.++..+|++++|+.+|++|+.+.... ...+.++.|+|.+|.. |+++.+...++
T Consensus 63 l~~~~~~~~~--~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~ 139 (307)
T 2ifu_A 63 AEAHANNRSL--FHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQ 139 (307)
T ss_dssp HHHHHHTTCH--HHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHcCCH--HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 9999999886 4567899999999999999999999999999886544 3678899999999998 99987655555
Q ss_pred HhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHH
Q 004943 512 LIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAR 591 (722)
Q Consensus 512 l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~ 591 (722)
.+..++...+ +....+.+++.+|.++..+|++++|..+|++++++.. ..++....+.++..+|.++...|++++|.
T Consensus 140 ~Al~~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 140 QAAAVFENEE---RLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYK-EMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhCC---ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 5555544332 2334678999999999999999999999999999976 57777888889999999999999999999
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCc
Q 004943 592 EILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDR 627 (722)
Q Consensus 592 ~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~ 627 (722)
..++.++ +.....+. .+...+..|...+ ..|+.
T Consensus 216 ~~~~~al-~~p~~~~~-~e~~~l~~l~~~~-~~~d~ 248 (307)
T 2ifu_A 216 KCVRESY-SIPGFSGS-EDCAALEDLLQAY-DEQDE 248 (307)
T ss_dssp HHHHHHT-TSTTSTTS-HHHHHHHHHHHHH-HTTCH
T ss_pred HHHHHHh-CCCCCCCC-HHHHHHHHHHHHH-HhcCH
Confidence 9999999 65444432 3455566666666 35553
No 20
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.67 E-value=6.7e-15 Score=148.00 Aligned_cols=221 Identities=17% Similarity=0.042 Sum_probs=178.4
Q ss_pred HHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhc-----chhHHHHHHHH
Q 004943 418 ELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITE-----SKSMQAMCHAY 492 (722)
Q Consensus 418 ~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~-----~~~~~A~alln 492 (722)
....|++++|++.++++++++.+.........+.+++.+|.++...|++++|+..|++++...+ +....+.++.+
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 3568999999999999999998853211134578899999999999999999999999998873 34678889999
Q ss_pred HHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC-ChHHHH
Q 004943 493 AAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMG-NLQLVS 571 (722)
Q Consensus 493 la~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~g-d~~l~a 571 (722)
+|.+|...|+++.+...+..+...+....... ....+.+++.+|.++...|++++|..++++++++..+..+ +....+
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 169 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKF-HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVA 169 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC-ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 99999999999875555544444332221111 1136789999999999999999999999999999765333 357788
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcC-------------------------------------------Chh
Q 004943 572 QYLTILGNLALALHDTVQAREILRSSLTLAKKLY-------------------------------------------DIP 608 (722)
Q Consensus 572 ~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~-------------------------------------------D~~ 608 (722)
.++..||.++...|++++|...++.++.++.+.+ +.+
T Consensus 170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (283)
T 3edt_B 170 KTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSP 249 (283)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCH
Confidence 9999999999999999999999999999976632 456
Q ss_pred HHHHHHHHHHHHHHHcCCchhHhHHHHHHHH
Q 004943 609 TQIWALSVLTALYQQLGDRGNEMENDEYRRK 639 (722)
Q Consensus 609 ~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~ 639 (722)
....++..|+.+|...|++++|...++...+
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6788899999999999999999999887654
No 21
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.67 E-value=1.6e-13 Score=147.01 Aligned_cols=226 Identities=15% Similarity=0.087 Sum_probs=181.7
Q ss_pred HHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHHHH
Q 004943 351 VILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEA 430 (722)
Q Consensus 351 ~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~~ 430 (722)
+.++...|++++|.++++++++. + +. ....+.++|.++...|++++|++.
T Consensus 142 ~~~~~~~g~~~~A~~~~~~al~~---------~-p~--------------------~~~~~~~l~~~~~~~g~~~~A~~~ 191 (388)
T 1w3b_A 142 GNLLKALGRLEEAKACYLKAIET---------Q-PN--------------------FAVAWSNLGCVFNAQGEIWLAIHH 191 (388)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHH---------C-TT--------------------CHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHh---------C-CC--------------------CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 55566789999999999999876 1 22 123346789999999999999999
Q ss_pred HHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHH
Q 004943 431 LVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAI 510 (722)
Q Consensus 431 l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL 510 (722)
+++++++ .|+. ..+++.+|.++...|++++|+..|.+++....+. ..++.++|.+|...|+++.+...+
T Consensus 192 ~~~al~~---~p~~-----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~ 260 (388)
T 1w3b_A 192 FEKAVTL---DPNF-----LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH---AVVHGNLACVYYEQGLIDLAIDTY 260 (388)
T ss_dssp HHHHHHH---CTTC-----HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhc---CCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCC---HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999985 3443 3568899999999999999999999998875443 456788999999999998877666
Q ss_pred HHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHH
Q 004943 511 DLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQA 590 (722)
Q Consensus 511 ~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA 590 (722)
+.+... .+ . -..+++.+|.++...|++++|...+++++++.- ....+++.+|.++...|++++|
T Consensus 261 ~~al~~--~p---~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~~l~~~~~~~g~~~~A 324 (388)
T 1w3b_A 261 RRAIEL--QP---H----FPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-------THADSLNNLANIKREQGNIEEA 324 (388)
T ss_dssp HHHHHT--CS---S----CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHhh--CC---C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-------ccHHHHHHHHHHHHHcCCHHHH
Confidence 655443 11 1 124688999999999999999999999998821 1235788999999999999999
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHH
Q 004943 591 REILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRK 639 (722)
Q Consensus 591 ~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~ 639 (722)
.+.++.++.+. ++ ...+...|+.+|...|++++|.+.|+...+
T Consensus 325 ~~~~~~al~~~---p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 325 VRLYRKALEVF---PE---FAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHTTSC---TT---CHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhcC---CC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999998742 22 256788999999999999999998887765
No 22
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.66 E-value=7.9e-15 Score=147.49 Aligned_cols=220 Identities=14% Similarity=0.002 Sum_probs=173.7
Q ss_pred hccCCChHHHHHHHHHHHHHHHHHHHhcCCC--CCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHHHHH
Q 004943 354 GRPKGLFKECMQRIQSGMQTIQDALLKLGIT--DGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEAL 431 (722)
Q Consensus 354 ~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~--~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~~l 431 (722)
....|++++|.+++++|++..++ .... +. .+.++.++|.++...|++++|++.+
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~~--------------------~~~~~~~l~~~~~~~g~~~~A~~~~ 66 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEK----TSGHDHPD--------------------VATMLNILALVYRDQNKYKEAAHLL 66 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHH----HHCSSSHH--------------------HHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHH----hcCCCCHH--------------------HHHHHHHHHHHHHHcccHHHHHHHH
Confidence 34568889999999999999443 3211 22 4555678999999999999999999
Q ss_pred HHHHHHHHhC--CchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcch-----hHHHHHHHHHHHHHHhcCChh
Q 004943 432 VQMKNWFIRF--PTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK-----SMQAMCHAYAAVSYFCIGDAE 504 (722)
Q Consensus 432 ~~Al~l~~~~--~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~-----~~~A~allnla~v~l~~G~~e 504 (722)
.++++++++. ++. ...+.+++.+|.++...|++++|+..|.+++...... .....++.++|.+|...|+++
T Consensus 67 ~~al~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 144 (283)
T 3edt_B 67 NDALAIREKTLGKDH--PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAE 144 (283)
T ss_dssp HHHHHHHHHHTCTTC--HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHcCCcc--hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHH
Confidence 9999999886 443 3457889999999999999999999999999886432 577888999999999999998
Q ss_pred HHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc--------------------
Q 004943 505 SSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHM-------------------- 564 (722)
Q Consensus 505 ~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~-------------------- 564 (722)
.+...++.+...+..... .+....+.++..+|.++..+|++++|..++++++++.....
T Consensus 145 ~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (283)
T 3edt_B 145 EVEYYYRRALEIYATRLG-PDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREE 223 (283)
T ss_dssp HHHHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHh
Confidence 755555544443222211 11113577899999999999999999999999999865311
Q ss_pred ----------------------CChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q 004943 565 ----------------------GNLQLVSQYLTILGNLALALHDTVQAREILRSSLTL 600 (722)
Q Consensus 565 ----------------------gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~l 600 (722)
.+....+.++..||.++...|++++|..+++.|+.+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 224 SKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp TTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 144777889999999999999999999999999875
No 23
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.66 E-value=1e-13 Score=153.93 Aligned_cols=243 Identities=12% Similarity=-0.006 Sum_probs=192.8
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhC
Q 004943 343 YALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRS 422 (722)
Q Consensus 343 ~aLvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g 422 (722)
.+.+|..-+.++...|++++|.++++++++. + +. ...+..+|.++...|
T Consensus 242 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~---------~-~~---------------------~~~~~~l~~~~~~~~ 290 (537)
T 3fp2_A 242 AALALCYTGIFHFLKNNLLDAQVLLQESINL---------H-PT---------------------PNSYIFLALTLADKE 290 (537)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------C-CC---------------------HHHHHHHHHHTCCSS
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhc---------C-CC---------------------chHHHHHHHHHHHhc
Confidence 4666777788899999999999999999887 1 11 011235799999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCC
Q 004943 423 GFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGD 502 (722)
Q Consensus 423 ~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~ 502 (722)
++++|++.+.+++++. |+ .+.++..+|.++...|++++|+..|++++....+.. .++.++|.++...|+
T Consensus 291 ~~~~A~~~~~~~~~~~---~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~la~~~~~~g~ 359 (537)
T 3fp2_A 291 NSQEFFKFFQKAVDLN---PE-----YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENV---YPYIQLACLLYKQGK 359 (537)
T ss_dssp CCHHHHHHHHHHHHHC---TT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCS---HHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHhccC---CC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCC
Confidence 9999999999999864 33 235689999999999999999999999998754432 567889999999999
Q ss_pred hhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 004943 503 AESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLAL 582 (722)
Q Consensus 503 ~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~ 582 (722)
++.+...++.+..... + ...+++.+|.++...|++++|...+++++++.. ...+.......+..+|.++.
T Consensus 360 ~~~A~~~~~~~~~~~~--~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~a~~~~ 429 (537)
T 3fp2_A 360 FTESEAFFNETKLKFP--T-------LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE-VQEKIHVGIGPLIGKATILA 429 (537)
T ss_dssp HHHHHHHHHHHHHHCT--T-------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HCSSCSSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC--C-------ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHHHHH
Confidence 9887766665544411 1 124678889999999999999999999999965 45554444455778889999
Q ss_pred hC----------CChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHHHHHH
Q 004943 583 AL----------HDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDE 643 (722)
Q Consensus 583 a~----------g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~ 643 (722)
.. |++++|...++.++.+. ++. ..+...|+.+|...|++++|.+.++...+....
T Consensus 430 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 430 RQSSQDPTQLDEEKFNAAIKLLTKACELD---PRS---EQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp HHHTC----CCHHHHHHHHHHHHHHHHHC---TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHhhccchhhhHhHHHHHHHHHHHHHHhC---CCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 98 99999999999999873 222 467899999999999999999999988776544
No 24
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.64 E-value=8.8e-13 Score=148.95 Aligned_cols=455 Identities=12% Similarity=0.034 Sum_probs=285.7
Q ss_pred HHHHHHhHHHHHhhccHhHHhHHHHHHhccCCCCChHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCcchhh
Q 004943 5 AEGLWGLADYHENKGEIGKAVKCLEAICQSHVSFLPIIEVKTRLRISTLLLKHTHNVNHAKSHLERSQLLLKAIPSCFEL 84 (722)
Q Consensus 5 ~~~L~~lAe~~~~~~~i~~ai~CLeA~l~~~~~l~p~~EA~~rLrla~iL~e~T~N~~~A~thLeka~~l~~~~~~~~dl 84 (722)
...+..++..+-..+++..|+.+++.+++..+ .+ .+...+|.+++. ..++++|...++++.. .+.
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p--~~----~~~~~l~~~~~~-~g~~~~A~~~~~~~~~----~~~---- 148 (597)
T 2xpi_A 84 EDYLRLWRHDALMQQQYKCAAFVGEKVLDITG--NP----NDAFWLAQVYCC-TGDYARAKCLLTKEDL----YNR---- 148 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC--CH----HHHHHHHHHHHH-TTCHHHHHHHHHHTCG----GGT----
T ss_pred HHHHHHHHHHHHHccCchHHHHHHHHHHhhCC--Cc----hHHHHHHHHHHH-cCcHHHHHHHHHHHhc----ccc----
Confidence 34566778888888899999999999986444 22 345668877665 5789999999998732 111
Q ss_pred hhhhhHHHHHHHHHcCCCchHHHHHHHHHHHhhh------hhcccccchhHHHHhhHHHhHhhhcCChHHHHHHHHhHHH
Q 004943 85 KCRTFSLLSQCYHLVGAIPPQKLILYKALDLTSS------ASQDVAVKLWSCNFNSQLANAFIIEGDYQSSISALQSGYV 158 (722)
Q Consensus 85 k~~~~~lLa~~y~~~~~~~~~k~~l~k~i~~~~~------~~~~~~~~~W~~~f~f~la~~~~~~~d~~~A~~~L~~g~~ 158 (722)
-......|+.+|.+.|....+..++.+....... ..+.-....-.-...+.++.++...|++..|++.++....
T Consensus 149 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 228 (597)
T 2xpi_A 149 SSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALM 228 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1236778999999999776554333321100000 0000000011223345678889999999999999988654
Q ss_pred HHhhcCChhHHHHHHHHHHHHHhcccCChhHHHHHHHhhhHHhhhcCccccccccchhhhhhHHHHHHHhhhhhhhhhhh
Q 004943 159 CATEISYPDLQMFFATAILHVHLMQWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIFYRLRICDYKNAAH 238 (722)
Q Consensus 159 ~A~~~~~~~~~v~f~l~~~~~~L~~~~~~~~v~~~l~~~~~~~~~i~~~~~~~~~g~~~~~e~l~i~~~l~ic~~~~~~~ 238 (722)
. +......+..++.. .+.. + +..... ...+.-.. .... ..+.....|...+..|...++
T Consensus 229 ~----~p~~~~~~~~l~~~--~~~~--~-~~~~~~-------~~~l~~~~--~~~~---~~~~~~~~~~~~~~~~~~~g~ 287 (597)
T 2xpi_A 229 V----DAKCYEAFDQLVSN--HLLT--A-DEEWDL-------VLKLNYST--YSKE---DAAFLRSLYMLKLNKTSHEDE 287 (597)
T ss_dssp H----CTTCHHHHHHHHHT--TCSC--H-HHHHHH-------HHHSCTHH--HHGG---GHHHHHHHHHTTSCTTTTHHH
T ss_pred h----CchhhHHHHHHHHh--hccc--c-hhHHHH-------HHhcCCcc--cccc---hHHHHHHHHHHHHHHHcCcch
Confidence 3 22222333323221 1111 0 000000 00000000 0000 011111111111111111111
Q ss_pred hhhhHHHHHHHhHHHHHHHHHHhhhhHHhhhhcCCCCCChhhhHHHHHHHHHHHHHHHhcccCcCcccccCCccccCCCc
Q 004943 239 HVDNLDAAMKADKQKMQEIQQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNAR 318 (722)
Q Consensus 239 ~v~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~lq~~l~~~~~~~~~~~~~l~~~~~~~~~ 318 (722)
+..-++..+ . +..
T Consensus 288 ----------------------------------------------------~~~A~~~~~-~-~~~------------- 300 (597)
T 2xpi_A 288 ----------------------------------------------------LRRAEDYLS-S-ING------------- 300 (597)
T ss_dssp ----------------------------------------------------HHHHHHHHH-T-STT-------------
T ss_pred ----------------------------------------------------HHHHHHHHH-H-hhc-------------
Confidence 111111100 0 100
Q ss_pred cccCcccccCCCCCcccccCcchhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHH
Q 004943 319 QAWGDKLVLAPSPMDGEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIW 398 (722)
Q Consensus 319 ~~~~d~~~~~~~~~~~~WLpk~~l~aLvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w 398 (722)
. | . .+-++..-+..+...|++++|.++++++++. . ..+.. .|
T Consensus 301 ---------------~---~-~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~--~~~~~-----------~~ 342 (597)
T 2xpi_A 301 ---------------L---E-K--SSDLLLCKADTLFVRSRFIDVLAITTKILEI----D--PYNLD-----------VY 342 (597)
T ss_dssp ---------------G---G-G--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----C--TTCCT-----------TH
T ss_pred ---------------C---C-c--hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc----C--cccHH-----------HH
Confidence 0 0 0 1122333455566789999999999998866 1 11111 11
Q ss_pred HHHHHHHHHHHHHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004943 399 MAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAK 478 (722)
Q Consensus 399 ~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~ 478 (722)
..++.++...|++++|.+.+.+++.. .|+. ..+++.+|..+...|++++|...|++++.
T Consensus 343 -------------~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 401 (597)
T 2xpi_A 343 -------------PLHLASLHESGEKNKLYLISNDLVDR---HPEK-----AVTWLAVGIYYLCVNKISEARRYFSKSST 401 (597)
T ss_dssp -------------HHHHHHHHHHTCHHHHHHHHHHHHHH---CTTS-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHhCCHHHHHHHHHHHHhh---Cccc-----HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34688889999999999999999853 3442 35688899999999999999999999887
Q ss_pred hhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004943 479 ITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQ 558 (722)
Q Consensus 479 l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~ 558 (722)
...+ ...++.++|.+|...|+++++.+.++.+..... + -..+++.+|.++...|++++|..+|+++++
T Consensus 402 ~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (597)
T 2xpi_A 402 MDPQ---FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ--G-------THLPYLFLGMQHMQLGNILLANEYLQSSYA 469 (597)
T ss_dssp HCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT--T-------CSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--c-------chHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5433 234667889999999999887777766544311 1 125688899999999999999999999998
Q ss_pred HHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHH-HHHHHHHHHHHHHcCCchhHhHHHHHH
Q 004943 559 IAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQ-IWALSVLTALYQQLGDRGNEMENDEYR 637 (722)
Q Consensus 559 la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q-~~al~~L~~l~~~~Gd~~~A~e~~~~~ 637 (722)
+. -.+ ..+++.||.++...|++++|.+.++.++.+..+.+..+.. ..+...++.+|...|++++|.+.++..
T Consensus 470 ~~---~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 542 (597)
T 2xpi_A 470 LF---QYD----PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQG 542 (597)
T ss_dssp HC---CCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hC---CCC----hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 72 122 3578899999999999999999999999998886644442 678889999999999999999998887
Q ss_pred HHH
Q 004943 638 RKK 640 (722)
Q Consensus 638 ~~~ 640 (722)
.+.
T Consensus 543 ~~~ 545 (597)
T 2xpi_A 543 LLL 545 (597)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
No 25
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.62 E-value=3e-14 Score=148.91 Aligned_cols=225 Identities=12% Similarity=0.002 Sum_probs=171.0
Q ss_pred chhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHH
Q 004943 340 SAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVEL 419 (722)
Q Consensus 340 ~~l~aLvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l 419 (722)
.+--+-+|--.+..+...|++++|..++++|+++ ..+.|+..+ .+..+.++|.++.
T Consensus 33 ~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~--------------------~a~~~~~lg~~~~ 88 (292)
T 1qqe_A 33 FEEAADLCVQAATIYRLRKELNLAGDSFLKAADY----QKKAGNEDE--------------------AGNTYVEAYKCFK 88 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHH----HHHTTCHHH--------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----HHHhCCHHH--------------------HHHHHHHHHHHHH
Confidence 3333444555577788899999999999999999 777776543 4666789999999
Q ss_pred hhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhhcch---hHHHHHHHHHHH
Q 004943 420 TRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSV-GCYSEAAFHYVEAAKITESK---SMQAMCHAYAAV 495 (722)
Q Consensus 420 ~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~al-G~~~~Al~~f~~AL~l~~~~---~~~A~allnla~ 495 (722)
..|++++|+..+.+|++++...++. ...+.+++.+|.++... |++++|+.+|++|+.+..+. ...+.++.++|.
T Consensus 89 ~~g~~~~A~~~~~~Al~l~~~~g~~--~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~ 166 (292)
T 1qqe_A 89 SGGNSVNAVDSLENAIQIFTHRGQF--RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCAD 166 (292)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 9999999999999999999999886 45678899999999996 99999999999999887543 355778999999
Q ss_pred HHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 004943 496 SYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLT 575 (722)
Q Consensus 496 v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~ 575 (722)
+|...|+++++...++.+..+....+.. ....+.+++.+|.++..+|++.+|..++++++++.- ..++ ..++..+.
T Consensus 167 ~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~-~~~~~~l~ 242 (292)
T 1qqe_A 167 LKALDGQYIEASDIYSKLIKSSMGNRLS--QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP-NFAD-SRESNFLK 242 (292)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTSSCTTT--GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHhcCCcc--cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCCC-cHHHHHHH
Confidence 9999999998777777665553322211 113556899999999999999999999999999843 3544 34456777
Q ss_pred HHHHHHH--hCCChHHHHHHH
Q 004943 576 ILGNLAL--ALHDTVQAREIL 594 (722)
Q Consensus 576 ~LG~~~~--a~g~~~qA~~~l 594 (722)
.|+..+. ..+++++|.+.+
T Consensus 243 ~l~~~~~~~~~~~~~~A~~~~ 263 (292)
T 1qqe_A 243 SLIDAVNEGDSEQLSEHCKEF 263 (292)
T ss_dssp HHHHHHHTTCTTTHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHh
Confidence 8888765 233455554444
No 26
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.61 E-value=7.1e-14 Score=134.93 Aligned_cols=170 Identities=15% Similarity=0.057 Sum_probs=144.5
Q ss_pred HHHHHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcch---
Q 004943 407 LMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK--- 483 (722)
Q Consensus 407 ~a~lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~--- 483 (722)
.+.++.++|.++..+|++++|.+.+.++++++++.++. ...+.+++.+|.++...|++++|+.+|.+++...+..
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 102 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDH--TAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPED 102 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCc--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCcc
Confidence 45556788999999999999999999999999999886 4567899999999999999999999999999885432
Q ss_pred -hHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 004943 484 -SMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHN 562 (722)
Q Consensus 484 -~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~ 562 (722)
...+.++.++|.++...|+++++...++....+.+.. .+....+.++..+|.++...|++++|..++++|++++.
T Consensus 103 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~- 178 (203)
T 3gw4_A 103 PLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA---DDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA- 178 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc---cchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH-
Confidence 3778999999999999999987665555554443333 23445788899999999999999999999999999987
Q ss_pred hcCChHHHHHHHHHHHHHHH
Q 004943 563 HMGNLQLVSQYLTILGNLAL 582 (722)
Q Consensus 563 ~~gd~~l~a~~L~~LG~~~~ 582 (722)
+.|++...+.++..++....
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~ 198 (203)
T 3gw4_A 179 ELEDSEAVNELMTRLNGLEH 198 (203)
T ss_dssp HTTCHHHHHHHHHHHHTTCC
T ss_pred HcCCHHHHHHHHhcccchhh
Confidence 69999999999999987643
No 27
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.61 E-value=1.1e-12 Score=144.16 Aligned_cols=241 Identities=12% Similarity=0.046 Sum_probs=190.7
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhC
Q 004943 343 YALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRS 422 (722)
Q Consensus 343 ~aLvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g 422 (722)
.+-+++.-+.++...|++++|.++++++++. . +. ...+.++|.++...|
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~----~------~~---------------------~~~~~~l~~~~~~~~ 284 (514)
T 2gw1_A 236 LAISLEHTGIFKFLKNDPLGAHEDIKKAIEL----F------PR---------------------VNSYIYMALIMADRN 284 (514)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH----C------CC---------------------HHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh----C------cc---------------------HHHHHHHHHHHHHCC
Confidence 4556666677888899999999999999887 1 10 011245799999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCC
Q 004943 423 GFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGD 502 (722)
Q Consensus 423 ~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~ 502 (722)
++++|.+.+.+++.+. |+. +.+++.+|.++...|++++|+..|.+++....+. ..++.++|.++...|+
T Consensus 285 ~~~~A~~~~~~~~~~~---~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~ 353 (514)
T 2gw1_A 285 DSTEYYNYFDKALKLD---SNN-----SSVYYHRGQMNFILQNYDQAGKDFDKAKELDPEN---IFPYIQLACLAYRENK 353 (514)
T ss_dssp CCTTGGGHHHHHHTTC---TTC-----THHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSC---SHHHHHHHHHTTTTTC
T ss_pred CHHHHHHHHHHHhhcC---cCC-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhh---HHHHHHHHHHHHHcCC
Confidence 9999999999998753 322 3468899999999999999999999998875543 3467888999999999
Q ss_pred hhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 004943 503 AESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLAL 582 (722)
Q Consensus 503 ~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~ 582 (722)
++.+...++.+..... + -..+++.+|.++...|++++|..++.+++++.. ...+....+.++..+|.++.
T Consensus 354 ~~~A~~~~~~~~~~~~---~------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~l~~~~~ 423 (514)
T 2gw1_A 354 FDDCETLFSEAKRKFP---E------APEVPNFFAEILTDKNDFDKALKQYDLAIELEN-KLDGIYVGIAPLVGKATLLT 423 (514)
T ss_dssp HHHHHHHHHHHHHHST---T------CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-TSSSCSSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcc---c------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh-ccchHHHHHHHHHHHHHHHh
Confidence 9887666665544311 1 124688899999999999999999999999954 35444444568899999999
Q ss_pred h---CCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHHHH
Q 004943 583 A---LHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKL 641 (722)
Q Consensus 583 a---~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~ 641 (722)
. .|++++|...++.++.+. ++. ..+...++.+|...|++++|.+.++...+..
T Consensus 424 ~~~~~~~~~~A~~~~~~a~~~~---~~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 424 RNPTVENFIEATNLLEKASKLD---PRS---EQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp TSCCTTHHHHHHHHHHHHHHHC---TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhhhcCCHHHHHHHHHHHHHhC---ccc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 9 999999999999999863 222 4577889999999999999999888777653
No 28
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.59 E-value=2.5e-12 Score=141.44 Aligned_cols=207 Identities=14% Similarity=0.108 Sum_probs=157.8
Q ss_pred HHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHH
Q 004943 347 DLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVE 426 (722)
Q Consensus 347 ylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~e 426 (722)
++.-+.++...|++++|.+++++++.. ++.. ..++.++|.++...|++++
T Consensus 273 ~~~l~~~~~~~~~~~~A~~~~~~~~~~---------~~~~---------------------~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 273 YIYMALIMADRNDSTEYYNYFDKALKL---------DSNN---------------------SSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHHHHHHTSSCCTTGGGHHHHHHTT---------CTTC---------------------THHHHHHHHHHHHTTCTTH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhhc---------CcCC---------------------HHHHHHHHHHHHHhCCHHH
Confidence 444466777889999999999998776 1111 1123457999999999999
Q ss_pred HHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHH
Q 004943 427 AQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESS 506 (722)
Q Consensus 427 A~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a 506 (722)
|++.+.+++++. |+. ..+++.+|.++...|++++|+..|.+++....+. ..++.++|.++...|+++.+
T Consensus 323 A~~~~~~~~~~~---~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A 391 (514)
T 2gw1_A 323 AGKDFDKAKELD---PEN-----IFPYIQLACLAYRENKFDDCETLFSEAKRKFPEA---PEVPNFFAEILTDKNDFDKA 391 (514)
T ss_dssp HHHHHHHHHHTC---SSC-----SHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTC---SHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhC---hhh-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccC---HHHHHHHHHHHHHCCCHHHH
Confidence 999999998853 332 2468889999999999999999999998765443 24667889999999999886
Q ss_pred HHHHHHhcchhcccccccChHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Q 004943 507 SQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMR---QQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALA 583 (722)
Q Consensus 507 ~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~---~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a 583 (722)
...++.+......... ....+.+++.+|.++.. .|++++|..++++++++.. .+ ..++..+|.++..
T Consensus 392 ~~~~~~a~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~---~~----~~~~~~la~~~~~ 461 (514)
T 2gw1_A 392 LKQYDLAIELENKLDG---IYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP---RS----EQAKIGLAQMKLQ 461 (514)
T ss_dssp HHHHHHHHHHHHTSSS---CSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT---TC----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccch---HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc---cc----HHHHHHHHHHHHH
Confidence 6666655444222211 11124588999999999 9999999999999998721 11 3578899999999
Q ss_pred CCChHHHHHHHHHHHHHHHHc
Q 004943 584 LHDTVQAREILRSSLTLAKKL 604 (722)
Q Consensus 584 ~g~~~qA~~~l~~Al~lAkki 604 (722)
.|++++|.+.++.++.+....
T Consensus 462 ~g~~~~A~~~~~~a~~~~~~~ 482 (514)
T 2gw1_A 462 QEDIDEAITLFEESADLARTM 482 (514)
T ss_dssp TTCHHHHHHHHHHHHHHCSSH
T ss_pred hcCHHHHHHHHHHHHHhcccc
Confidence 999999999999999876433
No 29
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.57 E-value=1.7e-13 Score=143.11 Aligned_cols=210 Identities=14% Similarity=0.034 Sum_probs=162.0
Q ss_pred HhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcch---hHHHH
Q 004943 412 ENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK---SMQAM 488 (722)
Q Consensus 412 e~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~---~~~A~ 488 (722)
+..|.++...|+|++|++.+.++++++...++. ...+.+++++|.++..+|++++|+.+|++|+.+.... ...+.
T Consensus 41 ~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 118 (292)
T 1qqe_A 41 VQAATIYRLRKELNLAGDSFLKAADYQKKAGNE--DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (292)
T ss_dssp HHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 445788899999999999999999999998886 4567899999999999999999999999999887544 46788
Q ss_pred HHHHHHHHHHhc-CChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCh
Q 004943 489 CHAYAAVSYFCI-GDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNL 567 (722)
Q Consensus 489 allnla~v~l~~-G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~ 567 (722)
++.++|.+|... |+++.+...++.+..+....+ .....+.+++.+|.++..+|++++|..+|++++++.. ..++.
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~ 194 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ---SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSM-GNRLS 194 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS-SCTTT
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCC---ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh-cCCcc
Confidence 999999999996 999875555555544433222 1223567899999999999999999999999999853 34442
Q ss_pred -HHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchh
Q 004943 568 -QLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGN 629 (722)
Q Consensus 568 -~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~ 629 (722)
...+.++..+|.++...|++++|...++.++.+-...++.. +...+..|...+. .|+.++
T Consensus 195 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~-~~~~l~~l~~~~~-~~~~~~ 255 (292)
T 1qqe_A 195 QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR-ESNFLKSLIDAVN-EGDSEQ 255 (292)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----------HHHHHHHHHHHH-TTCTTT
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH-HHHHHHHHHHHHH-cCCHHH
Confidence 46777899999999999999999999999998877766542 2445556666663 344443
No 30
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.57 E-value=1.2e-13 Score=146.45 Aligned_cols=238 Identities=11% Similarity=-0.038 Sum_probs=179.9
Q ss_pred HHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHH
Q 004943 348 LMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEA 427 (722)
Q Consensus 348 lls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA 427 (722)
+.-+..+...|++++|.++++++++. + +. ...++.++|.++...|++++|
T Consensus 69 ~~~~~~~~~~g~~~~A~~~~~~al~~---------~-p~--------------------~~~~~~~lg~~~~~~g~~~~A 118 (365)
T 4eqf_A 69 FEEGLKRLKEGDLPVTILFMEAAILQ---------D-PG--------------------DAEAWQFLGITQAENENEQAA 118 (365)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH---------C-TT--------------------CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh---------C-cC--------------------CHHHHHHHHHHHHHCCCHHHH
Confidence 44466777889999999999999987 1 21 122346789999999999999
Q ss_pred HHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchh-------HHHHHHHHHHHHHHhc
Q 004943 428 QEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS-------MQAMCHAYAAVSYFCI 500 (722)
Q Consensus 428 ~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~-------~~A~allnla~v~l~~ 500 (722)
++.+.+++++. |+. +.+++.+|.++...|++++|+..|++++....+.. +.+....++|.++...
T Consensus 119 ~~~~~~al~~~---p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~ 190 (365)
T 4eqf_A 119 IVALQRCLELQ---PNN-----LKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDS 190 (365)
T ss_dssp HHHHHHHHHHC---TTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CC
T ss_pred HHHHHHHHhcC---CCC-----HHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhh
Confidence 99999999873 432 45689999999999999999999999998754432 3355667789999998
Q ss_pred CChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 004943 501 GDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNL 580 (722)
Q Consensus 501 G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~ 580 (722)
|+++.+...++.+..... +.. .+.+++.+|.++..+|++++|..++++++++.. . .+.+++.||.+
T Consensus 191 g~~~~A~~~~~~al~~~p---~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---~----~~~~~~~l~~~ 256 (365)
T 4eqf_A 191 SVLEGVKELYLEAAHQNG---DMI----DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRP---E----DYSLWNRLGAT 256 (365)
T ss_dssp HHHHHHHHHHHHHHHHSC---SSC----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---T----CHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCc---Ccc----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---C----CHHHHHHHHHH
Confidence 988876666665554411 111 235788999999999999999999999998832 1 24588999999
Q ss_pred HHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHHHHHH
Q 004943 581 ALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDE 643 (722)
Q Consensus 581 ~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~ 643 (722)
+...|++++|+..++.++.+. ++ ...+...|+.+|...|++++|.++++.+.+....
T Consensus 257 ~~~~g~~~~A~~~~~~al~~~---p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 313 (365)
T 4eqf_A 257 LANGDRSEEAVEAYTRALEIQ---PG---FIRSRYNLGISCINLGAYREAVSNFLTALSLQRK 313 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC---TT---CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHhcC---CC---chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 999999999999999999873 22 2668889999999999999999999998887654
No 31
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.56 E-value=3.9e-13 Score=141.76 Aligned_cols=239 Identities=14% Similarity=0.026 Sum_probs=148.2
Q ss_pred HHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHH
Q 004943 349 MVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQ 428 (722)
Q Consensus 349 ls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~ 428 (722)
.-+..+...|++++|.++++++++. ++.. ..++.++|.++...|++++|+
T Consensus 69 ~~~~~~~~~g~~~~A~~~~~~al~~---------~p~~---------------------~~~~~~l~~~~~~~g~~~~A~ 118 (368)
T 1fch_A 69 EEGLRRLQEGDLPNAVLLFEAAVQQ---------DPKH---------------------MEAWQYLGTTQAENEQELLAI 118 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHS---------CTTC---------------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh---------CCCC---------------------HHHHHHHHHHHHHCcCHHHHH
Confidence 3466777889999999999999876 1111 222345788888888888888
Q ss_pred HHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchh------------------------
Q 004943 429 EALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS------------------------ 484 (722)
Q Consensus 429 ~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~------------------------ 484 (722)
+.+.+++++. |+. +.+++.+|.++...|++++|+..|.+++....+..
T Consensus 119 ~~~~~al~~~---~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (368)
T 1fch_A 119 SALRRCLELK---PDN-----QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGS 190 (368)
T ss_dssp HHHHHHHHHC---TTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHH
T ss_pred HHHHHHHhcC---CCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHH
Confidence 8888888763 332 34677888888888888888888888776543221
Q ss_pred ----------------------H--HHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHH
Q 004943 485 ----------------------M--QAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLL 540 (722)
Q Consensus 485 ----------------------~--~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~ 540 (722)
. .+.++.++|.+|...|+++.+...++.+..... . ...+++.+|.++
T Consensus 191 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-----~----~~~~~~~l~~~~ 261 (368)
T 1fch_A 191 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-----N----DYLLWNKLGATL 261 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----T----CHHHHHHHHHHH
T ss_pred HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-----C----CHHHHHHHHHHH
Confidence 0 234555666666666666654444444333210 0 123566666666
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHH-----HHHHH
Q 004943 541 MRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQ-----IWALS 615 (722)
Q Consensus 541 ~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q-----~~al~ 615 (722)
...|++++|..++++++++.. ....++..+|.++...|++++|...++.++.+..+..++... ..+..
T Consensus 262 ~~~g~~~~A~~~~~~al~~~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 334 (368)
T 1fch_A 262 ANGNQSEEAVAAYRRALELQP-------GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWS 334 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCC-------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHH
Confidence 666777777777776666511 112456666677777777777777777776666555333221 34555
Q ss_pred HHHHHHHHcCCchhHhHHHHHHHHHH
Q 004943 616 VLTALYQQLGDRGNEMENDEYRRKKL 641 (722)
Q Consensus 616 ~L~~l~~~~Gd~~~A~e~~~~~~~~~ 641 (722)
.|+.+|...|+++.|...++.....+
T Consensus 335 ~l~~~~~~~g~~~~A~~~~~~~l~~~ 360 (368)
T 1fch_A 335 TLRLALSMLGQSDAYGAADARDLSTL 360 (368)
T ss_dssp HHHHHHHHHTCGGGHHHHHTTCHHHH
T ss_pred HHHHHHHHhCChHhHHHhHHHHHHHH
Confidence 66666666776666666555444433
No 32
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.54 E-value=2.7e-12 Score=127.56 Aligned_cols=233 Identities=13% Similarity=0.026 Sum_probs=185.0
Q ss_pred HHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCH
Q 004943 345 LVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGF 424 (722)
Q Consensus 345 Lvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~ 424 (722)
-++..-+..+...|++++|.++++++++. . . .. .++.++|.++...|++
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~----~---~--~~----------------------~~~~~~~~~~~~~~~~ 54 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWEL----H---K--DI----------------------TYLNNRAAAEYEKGEY 54 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----S---C--CT----------------------HHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh----h---c--cH----------------------HHHHHHHHHHHHcccH
Confidence 35566678888899999999999999988 2 1 11 1235679999999999
Q ss_pred HHHHHHHHHHHHHHHhCC-chhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCCh
Q 004943 425 VEAQEALVQMKNWFIRFP-TILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDA 503 (722)
Q Consensus 425 ~eA~~~l~~Al~l~~~~~-d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~ 503 (722)
++|++.+.+++++....+ +. ...+.+++.+|.++...|++++|+..|++++....+ +.++...|++
T Consensus 55 ~~A~~~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----------~~~~~~~~~~ 121 (258)
T 3uq3_A 55 ETAISTLNDAVEQGREMRADY--KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-----------ADILTKLRNA 121 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccccch--HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-----------hHHHHHHhHH
Confidence 999999999999988764 33 234788999999999999999999999999987655 2345555666
Q ss_pred hHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Q 004943 504 ESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALA 583 (722)
Q Consensus 504 e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a 583 (722)
+.+...++.+... . . ..+.+++.+|.++...|++++|..++++++++.. .+ ..++..+|.++..
T Consensus 122 ~~a~~~~~~~~~~---~-----~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~---~~----~~~~~~l~~~~~~ 185 (258)
T 3uq3_A 122 EKELKKAEAEAYV---N-----P-EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP---ED----ARGYSNRAAALAK 185 (258)
T ss_dssp HHHHHHHHHHHHC---C-----H-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TC----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc---C-----c-chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc---cc----HHHHHHHHHHHHH
Confidence 6555555443332 1 1 2456889999999999999999999999998832 12 3688899999999
Q ss_pred CCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHHHHHH
Q 004943 584 LHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDE 643 (722)
Q Consensus 584 ~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~ 643 (722)
.|++++|...++.++.+. ++ ...+...++.+|...|++++|.+.++...+...+
T Consensus 186 ~~~~~~A~~~~~~al~~~---~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 239 (258)
T 3uq3_A 186 LMSFPEAIADCNKAIEKD---PN---FVRAYIRKATAQIAVKEYASALETLDAARTKDAE 239 (258)
T ss_dssp TTCHHHHHHHHHHHHHHC---TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhC---HH---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChh
Confidence 999999999999998863 22 2457788999999999999999999988877654
No 33
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.54 E-value=5e-13 Score=135.04 Aligned_cols=239 Identities=10% Similarity=-0.012 Sum_probs=189.3
Q ss_pred HHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHH
Q 004943 348 LMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEA 427 (722)
Q Consensus 348 lls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA 427 (722)
+.-+.++...|++++|.++++++++. .+.+.. .+.++|.++...|++++|
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~------~p~~~~------------------------~~~~l~~~~~~~~~~~~A 56 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAK------KYNSPY------------------------IYNRRAVCYYELAKYDLA 56 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHT------TCCCST------------------------THHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHh------CCCcHH------------------------HHHHHHHHHHHHhhHHHH
Confidence 34467778899999999999999876 111111 124579999999999999
Q ss_pred HHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHH
Q 004943 428 QEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSS 507 (722)
Q Consensus 428 ~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~ 507 (722)
++.+.++++ ....++ ..+.++..+|.++...|++++|+..|+.++....+. ..++.++|.+|...|+++.+.
T Consensus 57 ~~~~~~a~~-~~~~~~----~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~ 128 (272)
T 3u4t_A 57 QKDIETYFS-KVNATK----AKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTR---LDMYGQIGSYFYNKGNFPLAI 128 (272)
T ss_dssp HHHHHHHHT-TSCTTT----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---THHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHh-ccCchh----HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHccCHHHHH
Confidence 999999998 222222 246778999999999999999999999999875543 357789999999999998888
Q ss_pred HHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCC-
Q 004943 508 QAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHD- 586 (722)
Q Consensus 508 ~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~- 586 (722)
..++.+... .+ . ...+++.+|......+++++|..++++++++.. .+ ..++..+|.++...|+
T Consensus 129 ~~~~~al~~---~~--~----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p---~~----~~~~~~~~~~~~~~~~~ 192 (272)
T 3u4t_A 129 QYMEKQIRP---TT--T----DPKVFYELGQAYYYNKEYVKADSSFVKVLELKP---NI----YIGYLWRARANAAQDPD 192 (272)
T ss_dssp HHHGGGCCS---SC--C----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---TC----HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHhhc---CC--C----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc---cc----hHHHHHHHHHHHHcCcc
Confidence 877766554 11 1 235788899444566799999999999998832 11 4678889999999999
Q ss_pred --hHHHHHHHHHHHHHHHHcCCh--hHHHHHHHHHHHHHHHcCCchhHhHHHHHHHHH
Q 004943 587 --TVQAREILRSSLTLAKKLYDI--PTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 640 (722)
Q Consensus 587 --~~qA~~~l~~Al~lAkki~D~--~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~ 640 (722)
.++|...++.++.+.++.++. .....++..|+.+|...|++++|.++++...+.
T Consensus 193 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 193 TKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp CSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 889999999999999888884 444568889999999999999999988877654
No 34
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.53 E-value=1.7e-11 Score=136.05 Aligned_cols=249 Identities=10% Similarity=0.009 Sum_probs=191.0
Q ss_pred HHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHH
Q 004943 348 LMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEA 427 (722)
Q Consensus 348 lls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA 427 (722)
.+........+.+.++...+++|+...++.+..... . ...|. ..+..+..+|.++...|++++|
T Consensus 199 ~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~--~--------~~~~~------~~~~~~~~~g~~~~~~~~~~~A 262 (537)
T 3fp2_A 199 ALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV--D--------DPLRE------NAALALCYTGIFHFLKNNLLDA 262 (537)
T ss_dssp HHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC--C--------HHHHH------HHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC--c--------chhhH------HHHHHHHHHHHHHHhcccHHHH
Confidence 334444455566677777777777775553332211 1 11221 1455567889999999999999
Q ss_pred HHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHH
Q 004943 428 QEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSS 507 (722)
Q Consensus 428 ~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~ 507 (722)
++.+.+++++ .|+ ..++..+|.++...|++++|+..|.+++....+. ..++.++|.+|...|+++.+.
T Consensus 263 ~~~~~~~~~~---~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~ 330 (537)
T 3fp2_A 263 QVLLQESINL---HPT------PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEY---PPTYYHRGQMYFILQDYKNAK 330 (537)
T ss_dssp HHHHHHHHHH---CCC------HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhc---CCC------chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCC---HHHHHHHHHHHHhcCCHHHHH
Confidence 9999999986 343 3568889999999999999999999998776443 446788999999999998877
Q ss_pred HHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCCh
Q 004943 508 QAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDT 587 (722)
Q Consensus 508 ~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~ 587 (722)
..++.+..... + ...+++.+|.++...|++++|...+.++++... .+ ..++..+|.++...|++
T Consensus 331 ~~~~~a~~~~~--~-------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~----~~~~~~l~~~~~~~g~~ 394 (537)
T 3fp2_A 331 EDFQKAQSLNP--E-------NVYPYIQLACLLYKQGKFTESEAFFNETKLKFP---TL----PEVPTFFAEILTDRGDF 394 (537)
T ss_dssp HHHHHHHHHCT--T-------CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TC----THHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhCC--C-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CC----hHHHHHHHHHHHHhCCH
Confidence 66665554411 1 124688899999999999999999999998832 12 24778899999999999
Q ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHc----------CCchhHhHHHHHHHHH
Q 004943 588 VQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQL----------GDRGNEMENDEYRRKK 640 (722)
Q Consensus 588 ~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~----------Gd~~~A~e~~~~~~~~ 640 (722)
++|.+.++.++.+.....+....+.....++.++... |++++|.+.++...+.
T Consensus 395 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 457 (537)
T 3fp2_A 395 DTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL 457 (537)
T ss_dssp HHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh
Confidence 9999999999999999888777777778888999998 9999999988887664
No 35
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.52 E-value=6.8e-13 Score=136.94 Aligned_cols=231 Identities=12% Similarity=0.052 Sum_probs=181.9
Q ss_pred HhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhC-CHHHHHHH
Q 004943 352 ILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRS-GFVEAQEA 430 (722)
Q Consensus 352 ~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g-~~~eA~~~ 430 (722)
.++...|++++|..+++++++. ++.. ...+..+|.++...| ++++|.+.
T Consensus 64 ~~~~~~~~~~~A~~~~~~~~~~---------~~~~---------------------~~~~~~l~~~~~~~~~~~~~A~~~ 113 (330)
T 3hym_B 64 GTLVELNKANELFYLSHKLVDL---------YPSN---------------------PVSWFAVGCYYLMVGHKNEHARRY 113 (330)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH---------CTTS---------------------THHHHHHHHHHHHSCSCHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHh---------CcCC---------------------HHHHHHHHHHHHHhhhhHHHHHHH
Confidence 3335668899999999988876 1111 112245799999999 99999999
Q ss_pred HHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHH
Q 004943 431 LVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAI 510 (722)
Q Consensus 431 l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL 510 (722)
+.+++++. |+. +.++..+|.++...|++++|+..|++++....+. ..+..++|.+|...|+++.+...+
T Consensus 114 ~~~a~~~~---~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~ 182 (330)
T 3hym_B 114 LSKATTLE---KTY-----GPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGC---HLPMLYIGLEYGLTNNSKLAERFF 182 (330)
T ss_dssp HHHHHTTC---TTC-----THHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC---SHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhC---Ccc-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcccc---HHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99998764 332 3458899999999999999999999999876543 234566899999999998877777
Q ss_pred HHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHHHHhCCCh
Q 004943 511 DLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNL---QLVSQYLTILGNLALALHDT 587 (722)
Q Consensus 511 ~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~---~l~a~~L~~LG~~~~a~g~~ 587 (722)
+.+..... . ...+++.+|.++...|++++|..++++++++.. ..++. ...+.++..+|.++...|++
T Consensus 183 ~~al~~~~-----~----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 183 SQALSIAP-----E----DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIK-AIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp HHHHTTCT-----T----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT-TTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred HHHHHhCC-----C----ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhh-hccccccccHHHHHHHHHHHHHHHhcCH
Confidence 76655421 1 235788999999999999999999999999964 45553 23357899999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHH
Q 004943 588 VQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRK 639 (722)
Q Consensus 588 ~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~ 639 (722)
++|.+.++.++.+... ...+...++.+|...|++++|.++++...+
T Consensus 253 ~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 253 AEALDYHRQALVLIPQ------NASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHHHSTT------CSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHhhCcc------chHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 9999999999987422 245778899999999999999998876654
No 36
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.51 E-value=5.3e-13 Score=141.58 Aligned_cols=242 Identities=13% Similarity=0.034 Sum_probs=176.1
Q ss_pred HHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHH
Q 004943 346 VDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFV 425 (722)
Q Consensus 346 vylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~ 425 (722)
+|..-+.++...|++++|.++++++++. ++. ....+.++|.++...|+++
T Consensus 101 ~~~~lg~~~~~~g~~~~A~~~~~~al~~---------~p~---------------------~~~~~~~l~~~~~~~g~~~ 150 (365)
T 4eqf_A 101 AWQFLGITQAENENEQAAIVALQRCLEL---------QPN---------------------NLKALMALAVSYTNTSHQQ 150 (365)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTT---------------------CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc---------CCC---------------------CHHHHHHHHHHHHccccHH
Confidence 4555577778889999999999999987 112 1223467899999999999
Q ss_pred HHHHHHHHHHHHHHhCCchhh--hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCCh
Q 004943 426 EAQEALVQMKNWFIRFPTILQ--ACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDA 503 (722)
Q Consensus 426 eA~~~l~~Al~l~~~~~d~~~--~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~ 503 (722)
+|++.+.+++++....++... .+.+.+...+|.++...|++++|+..|++++....+.. .+.++.++|.+|...|++
T Consensus 151 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~~l~~~~~~~g~~ 229 (365)
T 4eqf_A 151 DACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMI-DPDLQTGLGVLFHLSGEF 229 (365)
T ss_dssp HHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSC-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCcc-CHHHHHHHHHHHHHCCCH
Confidence 999999999998766554321 13456677889999999999999999999998765421 244678899999999999
Q ss_pred hHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Q 004943 504 ESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALA 583 (722)
Q Consensus 504 e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a 583 (722)
+.+...++.+..... . -+.+++.+|.++...|++++|..++++++++.- ..+.++..||.++..
T Consensus 230 ~~A~~~~~~al~~~p-----~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~~l~~~~~~ 293 (365)
T 4eqf_A 230 NRAIDAFNAALTVRP-----E----DYSLWNRLGATLANGDRSEEAVEAYTRALEIQP-------GFIRSRYNLGISCIN 293 (365)
T ss_dssp HHHHHHHHHHHHHCT-----T----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-----C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-------CchHHHHHHHHHHHH
Confidence 887777666554411 1 235789999999999999999999999998821 125688999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHcCCh------hHHHHHHHHHHHHHHHcCCchhHhHHH
Q 004943 584 LHDTVQAREILRSSLTLAKKLYDI------PTQIWALSVLTALYQQLGDRGNEMEND 634 (722)
Q Consensus 584 ~g~~~qA~~~l~~Al~lAkki~D~------~~q~~al~~L~~l~~~~Gd~~~A~e~~ 634 (722)
.|++++|...++.|+.+..+..++ .....+...|+.++...|+.+.+....
T Consensus 294 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 350 (365)
T 4eqf_A 294 LGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAAN 350 (365)
T ss_dssp HTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 999999999999999999886553 112345678899999999887776543
No 37
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.50 E-value=1.7e-12 Score=135.14 Aligned_cols=194 Identities=9% Similarity=0.025 Sum_probs=157.0
Q ss_pred HHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcc---hhHHH
Q 004943 411 LENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES---KSMQA 487 (722)
Q Consensus 411 Le~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~---~~~~A 487 (722)
+.+.+..+...|+|++|.+.+.++++.....++. ......++.+|.++...|++++|+..|++++..... ....+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEF--QQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHH--HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhH--HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3456788899999999999999998865443332 234455778999999999999999999999976543 33678
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCh
Q 004943 488 MCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNL 567 (722)
Q Consensus 488 ~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~ 567 (722)
.++.++|.+|...|+++.+...++.+..++...++. ....+.+++++|.++..+|++++|..++.+|+++.. ..++.
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~--~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~-~~~~~ 232 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN--EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC-RINSM 232 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTBC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcc--ccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH-hcCcH
Confidence 899999999999999987555555544433322221 111347899999999999999999999999999975 57888
Q ss_pred HHHHHHHHHHHHHHHhCCChHHH-HHHHHHHHHHHHHcCChhH
Q 004943 568 QLVSQYLTILGNLALALHDTVQA-REILRSSLTLAKKLYDIPT 609 (722)
Q Consensus 568 ~l~a~~L~~LG~~~~a~g~~~qA-~~~l~~Al~lAkki~D~~~ 609 (722)
...+.++..+|.++...|++++| ..+++.|+.+++..++...
T Consensus 233 ~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~~~~ 275 (293)
T 2qfc_A 233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAY 275 (293)
T ss_dssp SSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCcHhh
Confidence 88999999999999999999999 8999999999999999744
No 38
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.49 E-value=2.2e-12 Score=133.11 Aligned_cols=234 Identities=12% Similarity=0.014 Sum_probs=184.1
Q ss_pred HHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHHH
Q 004943 350 VVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQE 429 (722)
Q Consensus 350 s~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~ 429 (722)
-+..+...|++++|.++++++++. ...... .+..++.++...|++++|.+
T Consensus 28 ~a~~~~~~g~~~~A~~~~~~~l~~------~p~~~~------------------------~~~~~~~~~~~~~~~~~A~~ 77 (330)
T 3hym_B 28 LAERHYYNCDFKMCYKLTSVVMEK------DPFHAS------------------------CLPVHIGTLVELNKANELFY 77 (330)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH------CTTCTT------------------------THHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc------CCCChh------------------------hHHHHHHHHHHhhhHHHHHH
Confidence 355556679999999999999876 111111 11235777889999999999
Q ss_pred HHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHH
Q 004943 430 ALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVG-CYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQ 508 (722)
Q Consensus 430 ~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG-~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~ 508 (722)
.+.++++. .|+. +.+++.+|.++...| ++++|...|+.++....+. ..++.++|.++...|+++.+..
T Consensus 78 ~~~~~~~~---~~~~-----~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~ 146 (330)
T 3hym_B 78 LSHKLVDL---YPSN-----PVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTY---GPAWIAYGHSFAVESEHDQAMA 146 (330)
T ss_dssp HHHHHHHH---CTTS-----THHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTC---THHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHh---CcCC-----HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCcc---HHHHHHHHHHHHHccCHHHHHH
Confidence 99999885 3332 356889999999999 9999999999998765443 3457788999999999988777
Q ss_pred HHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChH
Q 004943 509 AIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTV 588 (722)
Q Consensus 509 aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~ 588 (722)
.++.+...... ...+++.+|.++...|++++|..++++++++.. ....++..+|.++...|+++
T Consensus 147 ~~~~a~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-------~~~~~~~~l~~~~~~~~~~~ 210 (330)
T 3hym_B 147 AYFTAAQLMKG---------CHLPMLYIGLEYGLTNNSKLAERFFSQALSIAP-------EDPFVMHEVGVVAFQNGEWK 210 (330)
T ss_dssp HHHHHHHHTTT---------CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-------TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhccc---------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC-------CChHHHHHHHHHHHHcccHH
Confidence 77665554221 113566699999999999999999999988732 12468899999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCh---hHHHHHHHHHHHHHHHcCCchhHhHHHHHHHHH
Q 004943 589 QAREILRSSLTLAKKLYDI---PTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 640 (722)
Q Consensus 589 qA~~~l~~Al~lAkki~D~---~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~ 640 (722)
+|.+.++.++.+..+.++. +....+...++.+|...|++++|.+.++...+.
T Consensus 211 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 265 (330)
T 3hym_B 211 TAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL 265 (330)
T ss_dssp HHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 9999999999999887764 223567889999999999999999999888765
No 39
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.49 E-value=3.5e-12 Score=138.33 Aligned_cols=237 Identities=10% Similarity=0.022 Sum_probs=190.5
Q ss_pred hccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHHHHHHH
Q 004943 354 GRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQ 433 (722)
Q Consensus 354 ~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~~l~~ 433 (722)
....|++++|.+.+.+++.. .+..++... ..........| ....+.++|.++...|+|++|.+.+.+
T Consensus 14 l~~~~~y~eA~~~~~~~l~~----~~~~~~~~~-~~~~~~~~~~~--------~~~al~~l~~~y~~~~~~~~a~~~~~~ 80 (434)
T 4b4t_Q 14 LVNEKQYNEAEQVYLSLLDK----DSSQSSAAA-GASVDDKRRNE--------QETSILELGQLYVTMGAKDKLREFIPH 80 (434)
T ss_dssp HHHHTCHHHHHHHHHHHHHS----CCCSSSBSS-SSSBCSHHHHH--------HHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhh----CcccchhHH-HHHHHHHHhhh--------HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34568899999999888877 444443322 11111112233 344567899999999999999999999
Q ss_pred HHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcch---hHHHHHHHHHHHHHHhcCChhHHHHHH
Q 004943 434 MKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK---SMQAMCHAYAAVSYFCIGDAESSSQAI 510 (722)
Q Consensus 434 Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~---~~~A~allnla~v~l~~G~~e~a~~aL 510 (722)
++.++...++. .....+..++|.++...|.++.|...+..++...+.. ..++.+..++|.+|...|+++++...+
T Consensus 81 ~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l 158 (434)
T 4b4t_Q 81 STEYMMQFAKS--KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALI 158 (434)
T ss_dssp THHHHHTSCHH--HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHccch--HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHH
Confidence 99999998875 4567889999999999999999999999998776543 378889999999999999998876666
Q ss_pred HHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHhCCChHH
Q 004943 511 DLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGN-LQLVSQYLTILGNLALALHDTVQ 589 (722)
Q Consensus 511 ~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd-~~l~a~~L~~LG~~~~a~g~~~q 589 (722)
..+...+...++. ...+.+++.+|.++...|++.+|+..+++++.+... +++ +...+..+..+|.++...|++.+
T Consensus 159 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~y~~ 234 (434)
T 4b4t_Q 159 NDLLREFKKLDDK---PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANS-IYCPTQTVAELDLMSGILHCEDKDYKT 234 (434)
T ss_dssp HHHHHHHTTSSCS---THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHTTSSSCHHH
T ss_pred HHHHHHHHhcccc---hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhc-CCCchHHHHHHHHHHHHHHHHHHhHHH
Confidence 6555554444322 247889999999999999999999999999999874 655 57789999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCChhH
Q 004943 590 AREILRSSLTLAKKLYDIPT 609 (722)
Q Consensus 590 A~~~l~~Al~lAkki~D~~~ 609 (722)
|...+..++......++...
T Consensus 235 A~~~~~~a~~~~~~~~~~~~ 254 (434)
T 4b4t_Q 235 AFSYFFESFESYHNLTTHNS 254 (434)
T ss_dssp HHHHHHHHHHHHHHTTTSSC
T ss_pred HHHHHHHHHHHhhhhhhhhh
Confidence 99999999999999887543
No 40
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.49 E-value=1.2e-12 Score=136.20 Aligned_cols=193 Identities=9% Similarity=0.037 Sum_probs=155.9
Q ss_pred HhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcc---hhHHHH
Q 004943 412 ENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES---KSMQAM 488 (722)
Q Consensus 412 e~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~---~~~~A~ 488 (722)
.+.+..+...|+|++|.+.+.++++.....|+. ......++.+|.++...|++++|+.+|++++..... ....+.
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEF--QQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHH--HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHH--HHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 345777889999999999999998854333333 222445667899999999999999999999986433 336788
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChH
Q 004943 489 CHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQ 568 (722)
Q Consensus 489 allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~ 568 (722)
++.++|.+|...|+++.+...++.+.......+ .+....+.+++++|.++..+|++++|..++.+|++++. ..++..
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~-~~~~~~ 233 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALH--DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC-RINSMA 233 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSS--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTBCT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HcCcHH
Confidence 999999999999999875444444433333221 12334778999999999999999999999999999986 688889
Q ss_pred HHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHcCChhH
Q 004943 569 LVSQYLTILGNLALALHD-TVQAREILRSSLTLAKKLYDIPT 609 (722)
Q Consensus 569 l~a~~L~~LG~~~~a~g~-~~qA~~~l~~Al~lAkki~D~~~ 609 (722)
..+.++..+|.++...|+ .++|.+.++.|+.+++..++...
T Consensus 234 ~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~~~~~ 275 (293)
T 3u3w_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAY 275 (293)
T ss_dssp THHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCTGG
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHH
Confidence 999999999999999995 69999999999999999999754
No 41
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.47 E-value=1.2e-10 Score=126.47 Aligned_cols=259 Identities=12% Similarity=0.051 Sum_probs=187.5
Q ss_pred HHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHH
Q 004943 347 DLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVE 426 (722)
Q Consensus 347 ylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~e 426 (722)
++.-+.++...|++++|.++++++++. ++.. . .....|..-... .......++|.++...|++++
T Consensus 97 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~---~--~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~ 161 (450)
T 2y4t_A 97 RLQRGHLLLKQGKLDEAEDDFKKVLKS---------NPSE---N--EEKEAQSQLIKS-DEMQRLRSQALNAFGSGDYTA 161 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTS---------CCCH---H--HHHHHHHHHHHH-HHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc---------CCCC---h--hhHHHHHHHHHH-HHHHHHHHHHHHHHHcCCHHH
Confidence 344456667789999999999988765 1111 0 000122111110 133345678999999999999
Q ss_pred HHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHH
Q 004943 427 AQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESS 506 (722)
Q Consensus 427 A~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a 506 (722)
|++.+.+++++ .|+ ...+++.+|.++...|++++|+..|.+++....+. ..++.++|.+|...|+++.+
T Consensus 162 A~~~~~~~~~~---~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A 230 (450)
T 2y4t_A 162 AIAFLDKILEV---CVW-----DAELRELRAECFIKEGEPRKAISDLKAASKLKNDN---TEAFYKISTLYYQLGDHELS 230 (450)
T ss_dssp HHHHHHHHHHH---CTT-----CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSC---HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHh---CCC-----ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHH
Confidence 99999999875 333 23568899999999999999999999998765433 46678899999999999886
Q ss_pred HHHHHHhcchhcccccccC---hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Q 004943 507 SQAIDLIGPVYQMKDTING---VREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALA 583 (722)
Q Consensus 507 ~~aL~l~~~l~r~~~~~~~---~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a 583 (722)
...++.+............ ..........+|.++...|++.+|..+|++++++. -.+.......+..+|.++..
T Consensus 231 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~~~~~~l~~~~~~ 307 (450)
T 2y4t_A 231 LSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE---PSIAEYTVRSKERICHCFSK 307 (450)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---CSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CcchHHHHHHHHHHHHHHHH
Confidence 6666655443111100000 00011233556999999999999999999999872 33556667889999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHHH
Q 004943 584 LHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 640 (722)
Q Consensus 584 ~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~ 640 (722)
.|++++|...++.++.+. ++ ...++..++.++...|++++|.+.++...+.
T Consensus 308 ~g~~~~A~~~~~~a~~~~---p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 308 DEKPVEAIRVCSEVLQME---PD---NVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp TTCHHHHHHHHHHHHHHC---TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhC---cc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 999999999999999762 22 2467888999999999999999998887653
No 42
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.47 E-value=1.8e-11 Score=127.27 Aligned_cols=258 Identities=13% Similarity=0.052 Sum_probs=190.2
Q ss_pred HHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHH--HHHHHHHHHHHHHhhHHHHHhhCC
Q 004943 346 VDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWM--AGVYLMLLMQFLENKVAVELTRSG 423 (722)
Q Consensus 346 vylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~--~~~y~~l~a~lLe~Lg~~~l~~g~ 423 (722)
+|+.-+.++...|++++|.++++++++. + ++ ... ....|. ..++ .......+|.++...|+
T Consensus 73 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------~-~~--~~~--~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 73 ARLQRGHLLLKQGKLDEAEDDFKKVLKS---------N-PS--EQE--EKEAESQLVKAD---EMQRLRSQALDAFDGAD 135 (359)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTS---------C-CC--HHH--HHHHHHHHHHHH---HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhc---------C-Cc--ccC--hHHHHHHHHHHH---HHHHHHHHHHHHHHccC
Confidence 3555677777889999999999999876 1 10 000 011111 1122 34445567999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCCh
Q 004943 424 FVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDA 503 (722)
Q Consensus 424 ~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~ 503 (722)
+++|++.+.++++.. |+. +.++..+|.++...|++++|+..|..++....+. ..++.++|.+|...|++
T Consensus 136 ~~~A~~~~~~~~~~~---~~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~ 204 (359)
T 3ieg_A 136 YTAAITFLDKILEVC---VWD-----AELRELRAECFIKEGEPRKAISDLKAASKLKSDN---TEAFYKISTLYYQLGDH 204 (359)
T ss_dssp HHHHHHHHHHHHHHC---TTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCC---HHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHhC---CCc-----hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCH
Confidence 999999999998763 332 3568899999999999999999999998765443 35678899999999999
Q ss_pred hHHHHHHHHhcchhcccccccC---hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 004943 504 ESSSQAIDLIGPVYQMKDTING---VREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNL 580 (722)
Q Consensus 504 e~a~~aL~l~~~l~r~~~~~~~---~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~ 580 (722)
+.+...++.+............ .-........+|.++...|++++|...++++++.. -.+......++..+|.+
T Consensus 205 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~la~~ 281 (359)
T 3ieg_A 205 ELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE---PSVAEYTVRSKERICHC 281 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCchHHHHHHHHHHHHH
Confidence 8866666655443221110000 00112234566999999999999999999999983 33666677788999999
Q ss_pred HHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHHH
Q 004943 581 ALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 640 (722)
Q Consensus 581 ~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~ 640 (722)
+...|++++|.+.++.++.+ -++ ...++..++.+|...|++++|.+.++...+.
T Consensus 282 ~~~~~~~~~A~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 282 FSKDEKPVEAIRICSEVLQM---EPD---NVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHccCHHHHHHHHHHHHHh---Ccc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 99999999999999999986 222 2568889999999999999999988877654
No 43
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.46 E-value=8.3e-12 Score=128.58 Aligned_cols=235 Identities=11% Similarity=-0.052 Sum_probs=131.4
Q ss_pred HHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHH
Q 004943 347 DLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVE 426 (722)
Q Consensus 347 ylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~e 426 (722)
++.-+..+...|++++|.++++++++. ++.. ...+..+|.++...|++++
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~---------~~~~---------------------~~~~~~l~~~~~~~~~~~~ 73 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQA---------APER---------------------EEAWRSLGLTQAENEKDGL 73 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTC---------------------HHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh---------CCCC---------------------HHHHHHHHHHHHHcCCHHH
Confidence 344466777889999999999999876 1111 1222456888889999999
Q ss_pred HHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchh--H-------------------
Q 004943 427 AQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS--M------------------- 485 (722)
Q Consensus 427 A~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~--~------------------- 485 (722)
|.+.+.+++++ .|+. ..++..+|.++...|++++|+..|.+++....+.. .
T Consensus 74 A~~~~~~a~~~---~~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (327)
T 3cv0_A 74 AIIALNHARML---DPKD-----IAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSED 145 (327)
T ss_dssp HHHHHHHHHHH---CTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------
T ss_pred HHHHHHHHHhc---CcCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHh
Confidence 99999998886 3332 34577888888999999999999988876533221 0
Q ss_pred -------------------------HHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHH
Q 004943 486 -------------------------QAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLL 540 (722)
Q Consensus 486 -------------------------~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~ 540 (722)
...++.++|.+|...|+++.+...++.+..... . ...++..+|.++
T Consensus 146 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-----~----~~~~~~~l~~~~ 216 (327)
T 3cv0_A 146 FFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-----D----DAQLWNKLGATL 216 (327)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----T----CHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-----C----cHHHHHHHHHHH
Confidence 022344445555555555443333333222200 0 113444555555
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhH------HHHHH
Q 004943 541 MRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPT------QIWAL 614 (722)
Q Consensus 541 ~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~------q~~al 614 (722)
...|++++|..++++++++.. . ...++..+|.++...|++++|.+.++.++.+.....+... ...+.
T Consensus 217 ~~~~~~~~A~~~~~~a~~~~~---~----~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 289 (327)
T 3cv0_A 217 ANGNRPQEALDAYNRALDINP---G----YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMW 289 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT---T----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcCC---C----CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHH
Confidence 555555555555555554411 0 1124445555555555555555555555554433222211 23344
Q ss_pred HHHHHHHHHcCCchhHhHHHH
Q 004943 615 SVLTALYQQLGDRGNEMENDE 635 (722)
Q Consensus 615 ~~L~~l~~~~Gd~~~A~e~~~ 635 (722)
..++.++...|++++|.+.++
T Consensus 290 ~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 290 DFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHHhcCCHHHHHHHHH
Confidence 455555555555555554444
No 44
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.46 E-value=4.9e-12 Score=115.59 Aligned_cols=155 Identities=17% Similarity=0.137 Sum_probs=98.6
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcch---hHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhccccccc
Q 004943 448 CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK---SMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTIN 524 (722)
Q Consensus 448 ~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~---~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~ 524 (722)
..+.+++.+|.++...|++++|+.+|.+++...... ...+.+..++|.+|...|+++.+...++.+.......+
T Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~--- 83 (164)
T 3ro3_A 7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK--- 83 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC---
Confidence 456788889999999999999999998888765432 25555666666666666666654444443333322221
Q ss_pred ChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHc
Q 004943 525 GVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKL 604 (722)
Q Consensus 525 ~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki 604 (722)
+....+.+++.+|.++...|++++|..++.+++++.. ..+++...+.++..+|.++...|++++|.+.++.++.++++.
T Consensus 84 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 162 (164)
T 3ro3_A 84 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ-ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 162 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC
T ss_pred CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-HccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Confidence 1223455666666666666666666666666666654 466666666666666666666666666666666666666665
Q ss_pred CC
Q 004943 605 YD 606 (722)
Q Consensus 605 ~D 606 (722)
+|
T Consensus 163 ~d 164 (164)
T 3ro3_A 163 GD 164 (164)
T ss_dssp --
T ss_pred CC
Confidence 54
No 45
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.45 E-value=1.8e-11 Score=124.91 Aligned_cols=220 Identities=14% Similarity=-0.026 Sum_probs=177.7
Q ss_pred HHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHh----h
Q 004943 346 VDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELT----R 421 (722)
Q Consensus 346 vylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~----~ 421 (722)
+++.-+..+...|++++|.++++++++. ++ ...+.++|.++.. .
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~~--------~~------------------------~~a~~~lg~~~~~g~~~~ 55 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACDL--------KE------------------------NSGCFNLGVLYYQGQGVE 55 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT--------TC------------------------HHHHHHHHHHHHHTSSSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHC--------CC------------------------HHHHHHHHHHHHcCCCcC
Confidence 3455567777889999999999998762 21 1223568999999 9
Q ss_pred CCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 004943 422 SGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHS----VGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSY 497 (722)
Q Consensus 422 g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~a----lG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~ 497 (722)
+++++|++.++++++. + .+.+++.+|.++.. .|++++|+.+|++++.. +...+..++|.+|
T Consensus 56 ~~~~~A~~~~~~a~~~----~------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~~ 120 (273)
T 1ouv_A 56 KNLKKAASFYAKACDL----N------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL-----KYAEGCASLGGIY 120 (273)
T ss_dssp CCHHHHHHHHHHHHHT----T------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHC----C------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc-----CCccHHHHHHHHH
Confidence 9999999999999885 1 34678999999999 99999999999999876 2456788999999
Q ss_pred Hh----cCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHhcCChHH
Q 004943 498 FC----IGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMR----QQDFQEARNRLAKGLQIAHNHMGNLQL 569 (722)
Q Consensus 498 l~----~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~----~G~~~eAk~~L~qAL~la~~~~gd~~l 569 (722)
.. .|+++.+...++.+... . -..+++.+|.++.. .+++++|..+++++++. ++
T Consensus 121 ~~~~~~~~~~~~A~~~~~~a~~~-------~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-----~~--- 181 (273)
T 1ouv_A 121 HDGKVVTRDFKKAVEYFTKACDL-------N----DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-----KD--- 181 (273)
T ss_dssp HHCSSSCCCHHHHHHHHHHHHHT-------T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TC---
T ss_pred HcCCCcccCHHHHHHHHHHHHhc-------C----cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-----CC---
Confidence 98 88888766666554433 1 12467889999998 99999999999999865 23
Q ss_pred HHHHHHHHHHHHHh----CCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH----cCCchhHhHHHHHHHHH
Q 004943 570 VSQYLTILGNLALA----LHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQ----LGDRGNEMENDEYRRKK 640 (722)
Q Consensus 570 ~a~~L~~LG~~~~a----~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~----~Gd~~~A~e~~~~~~~~ 640 (722)
..+...||.++.. .+++++|.+.++.|+.. ++ ..+...|+.+|.. .|++++|.++++.+.+.
T Consensus 182 -~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 182 -SPGCFNAGNMYHHGEGATKNFKEALARYSKACEL----EN----GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp -HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 3577899999999 99999999999998875 44 4578899999999 99999999988877654
No 46
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.44 E-value=3.3e-11 Score=132.07 Aligned_cols=162 Identities=12% Similarity=0.055 Sum_probs=107.3
Q ss_pred HHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHHHH
Q 004943 351 VILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEA 430 (722)
Q Consensus 351 ~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~~ 430 (722)
+......|.+++|.+++++++.. ++. ...++.++|.++...|++++|++.
T Consensus 220 ~~~~~~~~~~~~a~~~~~~al~~---------~~~---------------------~~~~~~~lg~~~~~~~~~~~A~~~ 269 (472)
T 4g1t_A 220 HKMREEGEEEGEGEKLVEEALEK---------APG---------------------VTDVLRSAAKFYRRKDEPDKAIEL 269 (472)
T ss_dssp HHCC------CHHHHHHHHHHHH---------CSS---------------------CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHh---------Ccc---------------------HHHHHHHHHHHHHHcCchHHHHHH
Confidence 34456678889999999999877 222 123346789999999999999999
Q ss_pred HHHHHHHHHhCCchhhhhHHHHHHHHHHHHHH-------------------hCCHHHHHHHHHHHHHhhcchhHHHHHHH
Q 004943 431 LVQMKNWFIRFPTILQACESMIEMLRGQYAHS-------------------VGCYSEAAFHYVEAAKITESKSMQAMCHA 491 (722)
Q Consensus 431 l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~a-------------------lG~~~~Al~~f~~AL~l~~~~~~~A~all 491 (722)
+.+++++ .|+. +.+++.+|.++.. .+.++.|..+|..++...... ..+..
T Consensus 270 ~~~al~~---~p~~-----~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~ 338 (472)
T 4g1t_A 270 LKKALEY---IPNN-----AYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNL---FRVCS 338 (472)
T ss_dssp HHHHHHH---STTC-----HHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTT---CCCHH
T ss_pred HHHHHHh---CCCh-----HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCch---hhhhh
Confidence 9999886 3442 2445566655443 344667777777766553322 34567
Q ss_pred HHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHH
Q 004943 492 YAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLL-MRQQDFQEARNRLAKGLQI 559 (722)
Q Consensus 492 nla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~-~~~G~~~eAk~~L~qAL~l 559 (722)
++|.+|...|+++.+...+..+.... .+.......++.+|... ...|++++|..+|.+||++
T Consensus 339 ~lg~~~~~~~~~~~A~~~~~kaL~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i 401 (472)
T 4g1t_A 339 ILASLHALADQYEEAEYYFQKEFSKE------LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI 401 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC------CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS
T ss_pred hHHHHHHHhccHHHHHHHHHHHHhcC------CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 88999999999988666666544331 11112334566676543 4789999999999999987
No 47
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.44 E-value=2.7e-11 Score=125.93 Aligned_cols=248 Identities=8% Similarity=-0.030 Sum_probs=185.3
Q ss_pred HHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHH
Q 004943 346 VDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFV 425 (722)
Q Consensus 346 vylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~ 425 (722)
+++.-+.++...|++++|.++++++++. ++.. ...+..+|.++...|+++
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~---------~~~~---------------------~~~~~~l~~~~~~~~~~~ 88 (359)
T 3ieg_A 39 AYYRRATVFLAMGKSKAALPDLTKVIAL---------KMDF---------------------TAARLQRGHLLLKQGKLD 88 (359)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH---------CTTC---------------------HHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh---------CCCc---------------------chHHHHHHHHHHHcCChH
Confidence 4556677778889999999999999887 1111 122356899999999999
Q ss_pred HHHHHHHHHHHHHH---hCCchhh----hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 004943 426 EAQEALVQMKNWFI---RFPTILQ----ACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYF 498 (722)
Q Consensus 426 eA~~~l~~Al~l~~---~~~d~~~----~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l 498 (722)
+|.+.+.+++++.. ..++... ..........|.++...|++++|+..|.+++....+. ..++.++|.++.
T Consensus 89 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~ 165 (359)
T 3ieg_A 89 EAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWD---AELRELRAECFI 165 (359)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHH
Confidence 99999999987643 2222100 0112234455899999999999999999998775543 356788899999
Q ss_pred hcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHH--------
Q 004943 499 CIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLV-------- 570 (722)
Q Consensus 499 ~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~-------- 570 (722)
..|+++.+...++.+..... . ...+++.+|.++...|++++|...+++++++.. .+....
T Consensus 166 ~~~~~~~A~~~~~~~~~~~~-----~----~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~~~~~~~ 233 (359)
T 3ieg_A 166 KEGEPRKAISDLKAASKLKS-----D----NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ---DHKRCFAHYKQVKK 233 (359)
T ss_dssp HTTCHHHHHHHHHHHHTTCS-----C----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCC-----C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc---cchHHHHHHHHHHH
Confidence 99999887777766554411 1 235788999999999999999999999998732 121111
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHHH
Q 004943 571 SQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 640 (722)
Q Consensus 571 a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~ 640 (722)
......+|.++...|++++|.+.++.++..... ++.....+...++.++...|++++|.+.++...+.
T Consensus 234 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 301 (359)
T 3ieg_A 234 LNKLIESAEELIRDGRYTDATSKYESVMKTEPS--VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM 301 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS--SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 112446699999999999999999999886533 44444556778999999999999999999887765
No 48
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.43 E-value=1.9e-12 Score=129.19 Aligned_cols=193 Identities=12% Similarity=0.014 Sum_probs=146.3
Q ss_pred HHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHH
Q 004943 411 LENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCH 490 (722)
Q Consensus 411 Le~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~al 490 (722)
+.++|.++...|++++|+..+++++++ .|+. +.+++.+|.++...|++++|+..|++++.+..+. ..++
T Consensus 8 ~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~-----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~---~~a~ 76 (217)
T 2pl2_A 8 PLRLGVQLYALGRYDAALTLFERALKE---NPQD-----PEALYWLARTQLKLGLVNPALENGKTLVARTPRY---LGGY 76 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTT---SSSC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHH
Confidence 356899999999999999999999874 4443 4568999999999999999999999999876443 4567
Q ss_pred HHHHHHHHhc-----------CChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 004943 491 AYAAVSYFCI-----------GDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQI 559 (722)
Q Consensus 491 lnla~v~l~~-----------G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~l 559 (722)
.++|.++... |+++++...++.+..+ .++ -+.+++.+|.++...|++++|...|++|+++
T Consensus 77 ~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 147 (217)
T 2pl2_A 77 MVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPR-------YAPLHLQRGLVYALLGERDKAEASLKQALAL 147 (217)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--Ccc-------cHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence 8889999998 8888766666655443 111 2357889999999999999999999999998
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHH
Q 004943 560 AHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYR 637 (722)
Q Consensus 560 a~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~ 637 (722)
. .+ ..++..||.++...|++++|...++.++.+. ++ ...+...|+.++...|++++|.+.++..
T Consensus 148 ~----~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---P~---~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 148 E----DT----PEIRSALAELYLSMGRLDEALAQYAKALEQA---PK---DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp C----CC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS---TT---CHHHHHHHHHHHTC--------------
T ss_pred c----cc----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC---ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3 23 3577899999999999999999999999863 33 2467889999999999999998877654
No 49
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.43 E-value=1e-11 Score=113.48 Aligned_cols=160 Identities=19% Similarity=0.132 Sum_probs=138.3
Q ss_pred cchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 004943 481 ESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 560 (722)
Q Consensus 481 ~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la 560 (722)
++....+.++.++|.++...|+++.+...+..+....... .+....+.+++.+|.++...|++++|..++.+++++.
T Consensus 3 ~d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 79 (164)
T 3ro3_A 3 GSRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF---GDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLA 79 (164)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh---CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4555778889999999999999987555555444443332 2234577899999999999999999999999999997
Q ss_pred HHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHHH
Q 004943 561 HNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 640 (722)
Q Consensus 561 ~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~ 640 (722)
. ..+++...+.++..+|.++...|++++|.+.++.++.++++.++++...++...++.+|...|++++|.++++...+.
T Consensus 80 ~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 80 R-QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp H-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred H-HhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6 588989999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred HHHH
Q 004943 641 LDEL 644 (722)
Q Consensus 641 ~~~l 644 (722)
.+++
T Consensus 159 ~~~~ 162 (164)
T 3ro3_A 159 SREV 162 (164)
T ss_dssp HTTC
T ss_pred HHHh
Confidence 6543
No 50
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.42 E-value=3.6e-11 Score=125.01 Aligned_cols=193 Identities=8% Similarity=-0.088 Sum_probs=156.1
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhcchh---HHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHH
Q 004943 454 MLRGQYAHSVGCYSEAAFHYVEAAKITESKS---MQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEA 530 (722)
Q Consensus 454 ~llG~~~~alG~~~~Al~~f~~AL~l~~~~~---~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A 530 (722)
...+..+...|+|++|...|.+++....... .......++|.++...|+++.+...+..+....... .+....+
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~ 155 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG---IDVYQNL 155 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS---SCTTHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC---CchHHHH
Confidence 4456677899999999999999998765432 344556778999999999887655555444332222 1222467
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHH
Q 004943 531 SLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQ 610 (722)
Q Consensus 531 ~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q 610 (722)
.+++.+|.++..+|++++|..++.+|+++......+....+.+++++|.+|...|++++|.+.++.|+.++++.++....
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 89999999999999999999999999999764233445555899999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHcCCchhH-hHHHHHHHHHHHHHhHHHH
Q 004943 611 IWALSVLTALYQQLGDRGNE-MENDEYRRKKLDELQKRLA 649 (722)
Q Consensus 611 ~~al~~L~~l~~~~Gd~~~A-~e~~~~~~~~~~~l~~~~~ 649 (722)
..++..+|.+|...|++++| .++++.+..+++.+.....
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~~~~ 275 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAY 275 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCcHhh
Confidence 99999999999999999999 8889999988877665443
No 51
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.40 E-value=4.3e-12 Score=126.61 Aligned_cols=195 Identities=13% Similarity=0.053 Sum_probs=144.6
Q ss_pred HHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHH
Q 004943 346 VDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFV 425 (722)
Q Consensus 346 vylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~ 425 (722)
+++.-+..+...|++++|..+++++++. + +. ....+.++|.++...|+++
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~---------~-p~--------------------~~~a~~~lg~~~~~~g~~~ 56 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKE---------N-PQ--------------------DPEALYWLARTQLKLGLVN 56 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTT---------S-SS--------------------CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---------C-CC--------------------CHHHHHHHHHHHHHcCCHH
Confidence 3455577888899999999999999877 2 22 2333467899999999999
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHh-----------CCHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 004943 426 EAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSV-----------GCYSEAAFHYVEAAKITESKSMQAMCHAYAA 494 (722)
Q Consensus 426 eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~al-----------G~~~~Al~~f~~AL~l~~~~~~~A~allnla 494 (722)
+|++.+++++++ .|+. +.+++.+|.++... |++++|+..|++++++..+. ..++.++|
T Consensus 57 ~A~~~~~~al~~---~P~~-----~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~---~~~~~~lg 125 (217)
T 2pl2_A 57 PALENGKTLVAR---TPRY-----LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY---APLHLQRG 125 (217)
T ss_dssp HHHHHHHHHHHH---CTTC-----HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTC---HHHHHHHH
T ss_pred HHHHHHHHHHHh---CCCc-----HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCccc---HHHHHHHH
Confidence 999999999986 3443 35688999999999 99999999999999875432 45678999
Q ss_pred HHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 004943 495 VSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYL 574 (722)
Q Consensus 495 ~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L 574 (722)
.+|...|+++++...++.+..+. + -..+++.+|.++...|++++|...|++++++. -.+ ..++
T Consensus 126 ~~~~~~g~~~~A~~~~~~al~~~---~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---P~~----~~~~ 188 (217)
T 2pl2_A 126 LVYALLGERDKAEASLKQALALE---D-------TPEIRSALAELYLSMGRLDEALAQYAKALEQA---PKD----LDLR 188 (217)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC---C-------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS---TTC----HHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcc---c-------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC----hHHH
Confidence 99999999998777777665552 1 22568899999999999999999999999882 122 3578
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHH
Q 004943 575 TILGNLALALHDTVQAREILRSSL 598 (722)
Q Consensus 575 ~~LG~~~~a~g~~~qA~~~l~~Al 598 (722)
..+|.++...|++++|...++.+-
T Consensus 189 ~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 189 VRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTC---------------
T ss_pred HHHHHHHHHccCHHHHHHHHHHHh
Confidence 899999999999999999887664
No 52
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.39 E-value=3.3e-11 Score=132.08 Aligned_cols=261 Identities=12% Similarity=0.028 Sum_probs=150.2
Q ss_pred HHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHH
Q 004943 347 DLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVE 426 (722)
Q Consensus 347 ylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~e 426 (722)
|-+-+.+...+|++++|.+++++|++++.+......+ +. .+.++.|+|.++..+|++++
T Consensus 54 yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~-~~--------------------~~~~~~nla~~y~~~g~~~~ 112 (472)
T 4g1t_A 54 CNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAE-IR--------------------SLVTWGNYAWVYYHMGRLSD 112 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCT-TT--------------------THHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccc-hH--------------------HHHHHHHHHHHHHHcCChHH
Confidence 3333666777899999999999999995442211111 11 34556889999999999999
Q ss_pred HHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHh---cC
Q 004943 427 AQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSV--GCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFC---IG 501 (722)
Q Consensus 427 A~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~al--G~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~---~G 501 (722)
|+..+.+++++...+++......+.++...|...... ++|++|+..|++|+.+-.+... +..++|.++.+ .|
T Consensus 113 A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~---~~~~~~~~~~~l~~~~ 189 (472)
T 4g1t_A 113 VQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPE---FTSGLAIASYRLDNWP 189 (472)
T ss_dssp HHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHH---HHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHhcCch
Confidence 9999999999999987643334567788888766655 5799999999999987554322 23334444333 34
Q ss_pred ChhH----HHHHHHHhcch---------------hccccccc---ChH--------HHHHHHHHHHHHHHhcCCHHHHHH
Q 004943 502 DAES----SSQAIDLIGPV---------------YQMKDTIN---GVR--------EEASLHFAYGLLLMRQQDFQEARN 551 (722)
Q Consensus 502 ~~e~----a~~aL~l~~~l---------------~r~~~~~~---~~~--------~~A~al~~lG~~~~~~G~~~eAk~ 551 (722)
+++. +.+++++- |- +...+... ... ....+++.+|.++...|++.+|..
T Consensus 190 ~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~ 268 (472)
T 4g1t_A 190 PSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIE 268 (472)
T ss_dssp CCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHH
Confidence 4333 33333321 10 00000000 000 012345555666666666666666
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCC------------ChHHHHHHHHHHHHHHHHcCC-hhHHHHHHHHHH
Q 004943 552 RLAKGLQIAHNHMGNLQLVSQYLTILGNLALALH------------DTVQAREILRSSLTLAKKLYD-IPTQIWALSVLT 618 (722)
Q Consensus 552 ~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g------------~~~qA~~~l~~Al~lAkki~D-~~~q~~al~~L~ 618 (722)
.+.+|+++. .-.+.++..||.+|...+ ....+......|+...++... .+....+...++
T Consensus 269 ~~~~al~~~-------p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg 341 (472)
T 4g1t_A 269 LLKKALEYI-------PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILA 341 (472)
T ss_dssp HHHHHHHHS-------TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHH
T ss_pred HHHHHHHhC-------CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHH
Confidence 666655541 111234555555543321 111222222222222222100 001123456789
Q ss_pred HHHHHcCCchhHhHHHHHHHH
Q 004943 619 ALYQQLGDRGNEMENDEYRRK 639 (722)
Q Consensus 619 ~l~~~~Gd~~~A~e~~~~~~~ 639 (722)
.+|...|++++|.+.|+.+..
T Consensus 342 ~~~~~~~~~~~A~~~~~kaL~ 362 (472)
T 4g1t_A 342 SLHALADQYEEAEYYFQKEFS 362 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHh
Confidence 999999999999999987764
No 53
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.39 E-value=6.8e-11 Score=128.33 Aligned_cols=241 Identities=15% Similarity=0.083 Sum_probs=182.7
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhC
Q 004943 343 YALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRS 422 (722)
Q Consensus 343 ~aLvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g 422 (722)
.+-+++.-+..+...|++++|.++++++++. ++.. ..++.++|.++...|
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---------~p~~---------------------~~~~~~l~~~~~~~g 74 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDG---------DPDN---------------------YIAYYRRATVFLAMG 74 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTC---------------------HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------CCcc---------------------HHHHHHHHHHHHHCC
Confidence 4556666677888899999999999999876 1121 223356899999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhH------------HHHHH
Q 004943 423 GFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSM------------QAMCH 490 (722)
Q Consensus 423 ~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~------------~A~al 490 (722)
++++|++.+.+++++. |+. ..+++.+|.++...|++++|...|++++....+... .....
T Consensus 75 ~~~~A~~~~~~al~~~---p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 146 (450)
T 2y4t_A 75 KSKAALPDLTKVIQLK---MDF-----TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRL 146 (450)
T ss_dssp CHHHHHHHHHHHHHHC---TTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC---CCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHH
Confidence 9999999999999863 432 466889999999999999999999999876554321 11224
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHH
Q 004943 491 AYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLV 570 (722)
Q Consensus 491 lnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~ 570 (722)
.++|.++...|+++.+...++.+..... . ...+++.+|.++...|++++|...++++++... .+
T Consensus 147 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~---- 210 (450)
T 2y4t_A 147 RSQALNAFGSGDYTAAIAFLDKILEVCV-----W----DAELRELRAECFIKEGEPRKAISDLKAASKLKN---DN---- 210 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCT-----T----CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC---SC----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC-----C----ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---CC----
Confidence 5568889999999887666665544311 1 235788899999999999999999999998831 22
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHH---------HHHHHHHHHHHcCCchhHhHHHHHHHHH
Q 004943 571 SQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIW---------ALSVLTALYQQLGDRGNEMENDEYRRKK 640 (722)
Q Consensus 571 a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~---------al~~L~~l~~~~Gd~~~A~e~~~~~~~~ 640 (722)
..+++.+|.++...|++++|.+.++.++.+. ++...-.. ....++.++...|++++|.+.++...+.
T Consensus 211 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~ 286 (450)
T 2y4t_A 211 TEAFYKISTLYYQLGDHELSLSEVRECLKLD---QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT 286 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4688999999999999999999999998642 33222111 1234488999999999999988887654
No 54
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.39 E-value=2.5e-11 Score=127.93 Aligned_cols=218 Identities=9% Similarity=0.009 Sum_probs=161.8
Q ss_pred HHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHH
Q 004943 346 VDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFV 425 (722)
Q Consensus 346 vylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~ 425 (722)
+++.-+.++...|++++|.++++++++. ++.. ..++.++|.++...|+++
T Consensus 100 ~~~~l~~~~~~~g~~~~A~~~~~~al~~---------~~~~---------------------~~~~~~l~~~~~~~g~~~ 149 (368)
T 1fch_A 100 AWQYLGTTQAENEQELLAISALRRCLEL---------KPDN---------------------QTALMALAVSFTNESLQR 149 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTC---------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHhc---------CCCC---------------------HHHHHHHHHHHHHcCCHH
Confidence 4445577778889999999999999987 1111 122345677777777777
Q ss_pred HHHHHHHHHHHHHHhCCchhh-----------------------------------------hh--HHHHHHHHHHHHHH
Q 004943 426 EAQEALVQMKNWFIRFPTILQ-----------------------------------------AC--ESMIEMLRGQYAHS 462 (722)
Q Consensus 426 eA~~~l~~Al~l~~~~~d~~~-----------------------------------------~~--~a~i~~llG~~~~a 462 (722)
+|++.+.+++.+....+.... .. .+.+++.+|.++..
T Consensus 150 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~ 229 (368)
T 1fch_A 150 QACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL 229 (368)
T ss_dssp HHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHH
Confidence 777777776664333222110 00 35788999999999
Q ss_pred hCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHh
Q 004943 463 VGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMR 542 (722)
Q Consensus 463 lG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~ 542 (722)
.|++++|+..|++++....+. ..++.++|.++...|+++.+...++.+..... . ...+++.+|.++..
T Consensus 230 ~g~~~~A~~~~~~al~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-----~----~~~~~~~l~~~~~~ 297 (368)
T 1fch_A 230 SGEYDKAVDCFTAALSVRPND---YLLWNKLGATLANGNQSEEAVAAYRRALELQP-----G----YIRSRYNLGISCIN 297 (368)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----T----CHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCcCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----C----cHHHHHHHHHHHHH
Confidence 999999999999999875443 45778999999999999887666665544411 1 23578999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCChHH-----HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCC
Q 004943 543 QQDFQEARNRLAKGLQIAHNHMGNLQL-----VSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYD 606 (722)
Q Consensus 543 ~G~~~eAk~~L~qAL~la~~~~gd~~l-----~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D 606 (722)
.|++.+|..++++++++.. ..+++.. ...++..||.++...|++++|...++.++...++.-+
T Consensus 298 ~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 365 (368)
T 1fch_A 298 LGAHREAVEHFLEALNMQR-KSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFG 365 (368)
T ss_dssp HTCHHHHHHHHHHHHHHHH-TC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhCC-CCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHHHhcC
Confidence 9999999999999999955 3433322 2678999999999999999999999999998877543
No 55
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.36 E-value=5.6e-11 Score=128.78 Aligned_cols=226 Identities=8% Similarity=-0.016 Sum_probs=183.1
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHhCCchh---------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchh-
Q 004943 415 VAVELTRSGFVEAQEALVQMKNWFIRFPTIL---------QACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS- 484 (722)
Q Consensus 415 g~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~---------~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~- 484 (722)
+.-....|+|.+|++.+.++++..+..++.. ......++..+|.++...|++++|..+|..++......+
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 5556788999999999999999777655521 112334678899999999999999999999988765543
Q ss_pred --HHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 004943 485 --MQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHN 562 (722)
Q Consensus 485 --~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~ 562 (722)
....+..+++.++...|+++.+...+..........++ ...++.++..+|.++..+|++.+|...+.+++....
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~- 166 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKR---VFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFK- 166 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSC---CSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT-
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCc---cHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHH-
Confidence 56677888899998888887644444433333222221 123788999999999999999999999999999976
Q ss_pred hcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCh-hHHHHHHHHHHHHHHHcCCchhHhHHHHHHHHHH
Q 004943 563 HMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDI-PTQIWALSVLTALYQQLGDRGNEMENDEYRRKKL 641 (722)
Q Consensus 563 ~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~-~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~ 641 (722)
..++....+.+++.+|.+|...|++++|...++.|+.++..++++ ..+......++.+|...|++.+|..+|..+....
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~ 246 (434)
T 4b4t_Q 167 KLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESY 246 (434)
T ss_dssp TSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 578888999999999999999999999999999999999999876 4567788899999999999999999888887766
Q ss_pred HHH
Q 004943 642 DEL 644 (722)
Q Consensus 642 ~~l 644 (722)
...
T Consensus 247 ~~~ 249 (434)
T 4b4t_Q 247 HNL 249 (434)
T ss_dssp HHT
T ss_pred hhh
Confidence 553
No 56
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.34 E-value=1.5e-10 Score=120.29 Aligned_cols=187 Identities=8% Similarity=-0.074 Sum_probs=154.5
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhcchh---HHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHH
Q 004943 456 RGQYAHSVGCYSEAAFHYVEAAKITESKS---MQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASL 532 (722)
Q Consensus 456 lG~~~~alG~~~~Al~~f~~AL~l~~~~~---~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~a 532 (722)
....+...|+|++|...|++++....... .......++|.++...|+++.+...+..+.......+ +....+.+
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~---~~~~~~~~ 157 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI---DVYQNLYI 157 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCS---CTTHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccc---cHHHHHHH
Confidence 45667889999999999999987654333 2234455689999988888875555544433322222 22347789
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHH
Q 004943 533 HFAYGLLLMRQQDFQEARNRLAKGLQIAHNHM-GNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQI 611 (722)
Q Consensus 533 l~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~-gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~ 611 (722)
++.+|.++..+|++++|..++.+||+.... . ++....+.+++++|.+|...|++++|.+.+..|+.++++.++.....
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~ 236 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEA-LHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-cccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 999999999999999999999999999764 5 78899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCc-hhHhHHHHHHHHHHHHHhH
Q 004943 612 WALSVLTALYQQLGDR-GNEMENDEYRRKKLDELQK 646 (722)
Q Consensus 612 ~al~~L~~l~~~~Gd~-~~A~e~~~~~~~~~~~l~~ 646 (722)
.++..+|.+|...|+. ++|.++++.+..+++.+..
T Consensus 237 ~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~~ 272 (293)
T 3u3w_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEM 272 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999964 9999999999998887654
No 57
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.34 E-value=9.5e-11 Score=116.28 Aligned_cols=216 Identities=10% Similarity=-0.027 Sum_probs=167.5
Q ss_pred HHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHH
Q 004943 346 VDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFV 425 (722)
Q Consensus 346 vylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~ 425 (722)
+|+.-+.++...|++++|.++++++++. ....+... .+ ...++.++|.++...|+++
T Consensus 40 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~-----------~~--------~~~~~~~l~~~~~~~~~~~ 96 (258)
T 3uq3_A 40 YLNNRAAAEYEKGEYETAISTLNDAVEQ----GREMRADY-----------KV--------ISKSFARIGNAYHKLGDLK 96 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH----HHHTTCCH-----------HH--------HHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHh----Ccccccch-----------HH--------HHHHHHHHHHHHHHcccHH
Confidence 4555677888899999999999999998 43332110 01 2445567899999999999
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhH
Q 004943 426 EAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES 505 (722)
Q Consensus 426 eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~ 505 (722)
+|++.+.+++++. |+ +.++..+|++++|...|..++... .....++.++|.++...|+++.
T Consensus 97 ~A~~~~~~a~~~~---~~-------------~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 157 (258)
T 3uq3_A 97 KTIEYYQKSLTEH---RT-------------ADILTKLRNAEKELKKAEAEAYVN---PEKAEEARLEGKEYFTKSDWPN 157 (258)
T ss_dssp HHHHHHHHHHHHC---CC-------------HHHHHHHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhcC---ch-------------hHHHHHHhHHHHHHHHHHHHHHcC---cchHHHHHHHHHHHHHhcCHHH
Confidence 9999999999863 22 345677788999999998777643 3455678889999999999988
Q ss_pred HHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCC
Q 004943 506 SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALH 585 (722)
Q Consensus 506 a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g 585 (722)
+...++.+..... . ...+++.+|.++...|++++|..++.+++++.. ....++..+|.++...|
T Consensus 158 A~~~~~~a~~~~~-----~----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-------~~~~~~~~l~~~~~~~g 221 (258)
T 3uq3_A 158 AVKAYTEMIKRAP-----E----DARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-------NFVRAYIRKATAQIAVK 221 (258)
T ss_dssp HHHHHHHHHHHCT-----T----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCc-----c----cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-------HHHHHHHHHHHHHHHHh
Confidence 7766666544411 1 235788999999999999999999999998732 12467889999999999
Q ss_pred ChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 004943 586 DTVQAREILRSSLTLAKKLYDIPTQIWALSVLTA 619 (722)
Q Consensus 586 ~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~ 619 (722)
++++|.+.++.++.+..+.++.+....+...|++
T Consensus 222 ~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 222 EYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 9999999999999999888776666666666654
No 58
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.32 E-value=1.1e-11 Score=138.97 Aligned_cols=225 Identities=12% Similarity=0.011 Sum_probs=173.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCH-HHHHHHHHHHHHH
Q 004943 359 LFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGF-VEAQEALVQMKNW 437 (722)
Q Consensus 359 ~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~-~eA~~~l~~Al~l 437 (722)
...+..+.+++++..+++.. ...+. .+.++.++|.++...|+| ++|++.+.+++++
T Consensus 76 ~~~~~~~~~~~al~~l~~~~---~~~~~--------------------~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~ 132 (474)
T 4abn_A 76 KQQDVQEEMEKTLQQMEEVL---GSAQV--------------------EAQALMLKGKALNVTPDYSPEAEVLLSKAVKL 132 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---TTCCC--------------------CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh---ccCch--------------------hHHHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 34566777788888755422 22222 344456789999999999 9999999999986
Q ss_pred HHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhc---------CChhHHHH
Q 004943 438 FIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCI---------GDAESSSQ 508 (722)
Q Consensus 438 ~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~---------G~~e~a~~ 508 (722)
. |+. +.+++.+|.++...|++++|+..|++++.+..+ ..++.++|.+|... |+++++..
T Consensus 133 ~---p~~-----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~ 200 (474)
T 4abn_A 133 E---PEL-----VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN----KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVR 200 (474)
T ss_dssp C---TTC-----HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC----HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHH
T ss_pred C---CCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----HHHHHHHHHHHHHhccCChhhhhhhHHHHHH
Confidence 3 432 456899999999999999999999999988655 47889999999998 77766555
Q ss_pred HHHHhcchhcccccccChHHHHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 004943 509 AIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQ--------QDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNL 580 (722)
Q Consensus 509 aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~--------G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~ 580 (722)
.++.+..+. .+ -+.+++.+|.++... |++++|..+|++|+++.- . ....+.++..||.+
T Consensus 201 ~~~~al~~~---p~------~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~---~~~~~~~~~~lg~~ 267 (474)
T 4abn_A 201 QAKLAVQMD---VL------DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDR-K---ASSNPDLHLNRATL 267 (474)
T ss_dssp HHHHHHHHC---TT------CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCG-G---GGGCHHHHHHHHHH
T ss_pred HHHHHHHhC---CC------CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCC-C---cccCHHHHHHHHHH
Confidence 555444431 11 235788999999998 999999999999999821 0 12456789999999
Q ss_pred HHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHH
Q 004943 581 ALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYR 637 (722)
Q Consensus 581 ~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~ 637 (722)
+...|++++|.+.++.|+.+. ++. ..+...++.++...|++++|.+.+...
T Consensus 268 ~~~~g~~~~A~~~~~~al~l~---p~~---~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 268 HKYEESYGEALEGFSQAAALD---PAW---PEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC---TTC---HHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHcCCHHHHHHHHHHHHHhC---CCC---HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999874 222 457788999999999888887755443
No 59
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.31 E-value=1e-10 Score=116.79 Aligned_cols=201 Identities=12% Similarity=-0.004 Sum_probs=160.9
Q ss_pred HHHHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHH
Q 004943 408 MQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQA 487 (722)
Q Consensus 408 a~lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A 487 (722)
+.++..+|.++...|++++|++.+.++++.. |+. +.+++.+|.++...|++++|+..|.+++....+. .
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---~ 105 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID---PSS-----ADAHAALAVVFQTEMEPKLADEEYRKALASDSRN---A 105 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC---TTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---H
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---CCh-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc---H
Confidence 4445678999999999999999999999863 332 4678899999999999999999999998875432 4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCh
Q 004943 488 MCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNL 567 (722)
Q Consensus 488 ~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~ 567 (722)
.++.++|.+|...|+++.+...++.+... +... ....+++.+|.++...|++++|..++.++++... .+
T Consensus 106 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~- 174 (252)
T 2ho1_A 106 RVLNNYGGFLYEQKRYEEAYQRLLEASQD----TLYP---ERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR---NQ- 174 (252)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTC----TTCT---THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS---CC-
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhC----ccCc---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc---cc-
Confidence 56788899999999998877777665441 0011 2456889999999999999999999999998731 12
Q ss_pred HHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHH
Q 004943 568 QLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRK 639 (722)
Q Consensus 568 ~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~ 639 (722)
..++..+|.++...|++++|.+.++.++... ++. ..+...++.++...|++++|.+.++...+
T Consensus 175 ---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 175 ---PSVALEMADLLYKEREYVPARQYYDLFAQGG---GQN---ARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS---CCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cCc---HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4578899999999999999999999987632 222 34677889999999999999988876654
No 60
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.31 E-value=1.4e-11 Score=121.71 Aligned_cols=203 Identities=10% Similarity=0.044 Sum_probs=142.4
Q ss_pred hHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhh
Q 004943 342 VYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTR 421 (722)
Q Consensus 342 l~aLvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~ 421 (722)
+.+..|+.-+..+...|++++|.++++++++. . +. ....+..+|.++...
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~---------~-~~--------------------~~~~~~~la~~~~~~ 70 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE---------N-KE--------------------DAIPYINFANLLSSV 70 (243)
T ss_dssp ---------------------CCTTHHHHHTT---------C-TT--------------------CHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh---------C-cc--------------------cHHHHHHHHHHHHHc
Confidence 35566666788888999999999999998774 1 11 122335579999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcC
Q 004943 422 SGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIG 501 (722)
Q Consensus 422 g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G 501 (722)
|++++|++.+.+++++. |+ .+.+++.+|.++...|++++|+..|+++++...+. ..++.++|.++...|
T Consensus 71 ~~~~~A~~~~~~~~~~~---~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~ 139 (243)
T 2q7f_A 71 NELERALAFYDKALELD---SS-----AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN---GDLFYMLGTVLVKLE 139 (243)
T ss_dssp TCHHHHHHHHHHHHHHC---TT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS---HHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHHcC---Cc-----chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhc
Confidence 99999999999999863 32 24668889999999999999999999998876543 335678899999999
Q ss_pred ChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 004943 502 DAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLA 581 (722)
Q Consensus 502 ~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~ 581 (722)
+++.+...++.+..... . ...+++.+|.++...|++++|...+.++++... .+ ..++..+|.++
T Consensus 140 ~~~~A~~~~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~----~~~~~~la~~~ 203 (243)
T 2q7f_A 140 QPKLALPYLQRAVELNE-----N----DTEARFQFGMCLANEGMLDEALSQFAAVTEQDP---GH----ADAFYNAGVTY 203 (243)
T ss_dssp CHHHHHHHHHHHHHHCT-----T----CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCT---TC----HHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCC-----c----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---cc----HHHHHHHHHHH
Confidence 99887666665544311 1 134788899999999999999999999988721 12 34788999999
Q ss_pred HhCCChHHHHHHHHHHHHHH
Q 004943 582 LALHDTVQAREILRSSLTLA 601 (722)
Q Consensus 582 ~a~g~~~qA~~~l~~Al~lA 601 (722)
...|++++|.+.++.++.+.
T Consensus 204 ~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 204 AYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHTTCTTHHHHHHHHHHHHC
T ss_pred HHccCHHHHHHHHHHHHccC
Confidence 99999999999999998753
No 61
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.31 E-value=2.3e-08 Score=111.51 Aligned_cols=200 Identities=16% Similarity=0.063 Sum_probs=144.1
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHh----hCCHHHHHHHH
Q 004943 356 PKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELT----RSGFVEAQEAL 431 (722)
Q Consensus 356 ~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~----~g~~~eA~~~l 431 (722)
..+++++|.++++++++. |+ .....++|.++.. .+++++|++.+
T Consensus 235 ~~~~~~~A~~~~~~a~~~--------~~------------------------~~a~~~lg~~y~~g~~~~~d~~~A~~~~ 282 (490)
T 2xm6_A 235 VTQDYTQSRVLFSQSAEQ--------GN------------------------SIAQFRLGYILEQGLAGAKEPLKALEWY 282 (490)
T ss_dssp SCCCHHHHHHHHHHHHTT--------TC------------------------HHHHHHHHHHHHHTTTSSCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHC--------CC------------------------HHHHHHHHHHHHCCCCCCCCHHHHHHHH
Confidence 367889999998888653 21 1112356777777 89999999999
Q ss_pred HHHHHHHHhCCchhhhhHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHH
Q 004943 432 VQMKNWFIRFPTILQACESMIEMLRGQYAHSV-----GCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESS 506 (722)
Q Consensus 432 ~~Al~l~~~~~d~~~~~~a~i~~llG~~~~al-----G~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a 506 (722)
+++.+. + .+.+.+.+|.++... +++++|+.+|+.++.. +...+..++|.+|...|.....
T Consensus 283 ~~a~~~----~------~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~y~~~g~~~~~ 347 (490)
T 2xm6_A 283 RKSAEQ----G------NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-----GDATAQANLGAIYFRLGSEEEH 347 (490)
T ss_dssp HHHHTT----T------CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHSCCHHHH
T ss_pred HHHHHc----C------CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCcccH
Confidence 998763 2 235678899998887 8999999999988764 2345778999999886644344
Q ss_pred HHHHHHhcchhcccccccChHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 004943 507 SQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMR----QQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLAL 582 (722)
Q Consensus 507 ~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~----~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~ 582 (722)
.++++........ + -..+++.+|.++.. .+++.+|..+|++|++. |+ ..+...||.+|.
T Consensus 348 ~~A~~~~~~a~~~----~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~-----~~----~~a~~~Lg~~y~ 410 (490)
T 2xm6_A 348 KKAVEWFRKAAAK----G----EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ-----GL----SAAQVQLGEIYY 410 (490)
T ss_dssp HHHHHHHHHHHHT----T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TC----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC----C----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC-----CC----HHHHHHHHHHHH
Confidence 4444444333221 1 23688899999998 89999999999998653 33 468889999999
Q ss_pred h----CCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Q 004943 583 A----LHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQ 622 (722)
Q Consensus 583 a----~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~ 622 (722)
. .+|.++|...++.|+..-.+ .+.-..+...|+.++.
T Consensus 411 ~g~g~~~d~~~A~~~~~~A~~~~~~---~~~~~~a~~~l~~~~~ 451 (490)
T 2xm6_A 411 YGLGVERDYVQAWAWFDTASTNDMN---LFGTENRNITEKKLTA 451 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHHHCC---HHHHHHHHHHHTTSCH
T ss_pred cCCCCCCCHHHHHHHHHHHHHCCCC---CcCCHHHHHHHHhcCH
Confidence 8 89999999999999886522 1222345555665544
No 62
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.30 E-value=9.5e-11 Score=112.03 Aligned_cols=164 Identities=13% Similarity=0.052 Sum_probs=132.8
Q ss_pred HHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHH
Q 004943 411 LENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCH 490 (722)
Q Consensus 411 Le~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~al 490 (722)
..++|.++..+|+|++|++.|++++++ .|+. +.++..+|.++...|++++|+..|..++....+. ..+.
T Consensus 8 y~~lG~~~~~~g~~~~A~~~~~~al~~---~p~~-----~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~ 76 (184)
T 3vtx_A 8 YMDIGDKKRTKGDFDGAIRAYKKVLKA---DPNN-----VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS---AEAY 76 (184)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC---HHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh---HHHH
Confidence 367899999999999999999999986 3443 3568899999999999999999999888765543 4556
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHH
Q 004943 491 AYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLV 570 (722)
Q Consensus 491 lnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~ 570 (722)
.++|.++...++++.+...+..+..... . -..+++.+|.++..+|++++|...+++++++ . ...
T Consensus 77 ~~~~~~~~~~~~~~~a~~~~~~a~~~~~-----~----~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~-~------p~~ 140 (184)
T 3vtx_A 77 YILGSANFMIDEKQAAIDALQRAIALNT-----V----YADAYYKLGLVYDSMGEHDKAIEAYEKTISI-K------PGF 140 (184)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-----T----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C------TTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCc-----c----chHHHHHHHHHHHHhCCchhHHHHHHHHHHh-c------chh
Confidence 7778899998998876666655544311 1 2257888999999999999999999999988 2 122
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Q 004943 571 SQYLTILGNLALALHDTVQAREILRSSLTLA 601 (722)
Q Consensus 571 a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lA 601 (722)
+.++..||.++...|++++|.+.++.|+.+-
T Consensus 141 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 141 IRAYQSIGLAYEGKGLRDEAVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence 4688999999999999999999999998753
No 63
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.30 E-value=3e-10 Score=110.20 Aligned_cols=200 Identities=11% Similarity=0.007 Sum_probs=156.6
Q ss_pred HHHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHH
Q 004943 409 QFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAM 488 (722)
Q Consensus 409 ~lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~ 488 (722)
.++..+|.++...|++++|++.+.++++.. |+. +.+++.+|.++...|++++|...|.+++....+. ..
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~ 77 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD---PKN-----ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS---AE 77 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC---ccc-----hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hH
Confidence 344668999999999999999999999863 332 3568889999999999999999999998775432 44
Q ss_pred HHHHHHHHHHhc-CChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCh
Q 004943 489 CHAYAAVSYFCI-GDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNL 567 (722)
Q Consensus 489 allnla~v~l~~-G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~ 567 (722)
++.++|.++... |+++.+...++.+... .. .. ....+++.+|.++...|++++|..++.++++... .+
T Consensus 78 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~---~~-~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~- 146 (225)
T 2vq2_A 78 INNNYGWFLCGRLNRPAESMAYFDKALAD---PT-YP---TPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP---QF- 146 (225)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHTS---TT-CS---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---TC-
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHcC---cC-Cc---chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CC-
Confidence 678889999999 9998877666655441 11 11 1456889999999999999999999999998732 12
Q ss_pred HHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHH
Q 004943 568 QLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRR 638 (722)
Q Consensus 568 ~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~ 638 (722)
..++..+|.++...|++++|.+.++.++.... .+. ..+...++.++...|+.+++..+++...
T Consensus 147 ---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 147 ---PPAFKELARTKMLAGQLGDADYYFKKYQSRVE--VLQ---ADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC--SCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCC---HHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 35788999999999999999999999988642 022 2234677888999999998887666554
No 64
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.30 E-value=1.3e-10 Score=116.05 Aligned_cols=204 Identities=12% Similarity=-0.003 Sum_probs=160.7
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhC
Q 004943 343 YALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRS 422 (722)
Q Consensus 343 ~aLvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g 422 (722)
.+-+++.-+..+...|++++|.++++++++. . +. ...++..+|.++...|
T Consensus 36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---------~-~~--------------------~~~~~~~la~~~~~~~ 85 (252)
T 2ho1_A 36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEI---------D-PS--------------------SADAHAALAVVFQTEM 85 (252)
T ss_dssp HHHHHHHHHHHHHHTTCTGGGHHHHHHHHHH---------C-TT--------------------CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---------C-CC--------------------hHHHHHHHHHHHHHcC
Confidence 4667777788888999999999999999887 1 11 1223356799999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCC
Q 004943 423 GFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGD 502 (722)
Q Consensus 423 ~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~ 502 (722)
++++|.+.+.+++++. |+ .+.++..+|.++...|++++|+..|++++. .........++.++|.++...|+
T Consensus 86 ~~~~A~~~~~~a~~~~---~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~ 156 (252)
T 2ho1_A 86 EPKLADEEYRKALASD---SR-----NARVLNNYGGFLYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKK 156 (252)
T ss_dssp CHHHHHHHHHHHHHHC---TT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHC---cC-----cHHHHHHHHHHHHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCC
Confidence 9999999999999863 33 245688899999999999999999998887 22233456778889999999999
Q ss_pred hhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 004943 503 AESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLAL 582 (722)
Q Consensus 503 ~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~ 582 (722)
++.+...++.+..... . ...+++.+|.++...|++++|..+++++++.. -.+ ..++..++.++.
T Consensus 157 ~~~A~~~~~~~~~~~~-----~----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~----~~~~~~~~~~~~ 220 (252)
T 2ho1_A 157 PAQAKEYFEKSLRLNR-----N----QPSVALEMADLLYKEREYVPARQYYDLFAQGG---GQN----ARSLLLGIRLAK 220 (252)
T ss_dssp HHHHHHHHHHHHHHCS-----C----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS---CCC----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCc-----c----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cCc----HHHHHHHHHHHH
Confidence 9887666665544311 1 13578899999999999999999999998752 112 346789999999
Q ss_pred hCCChHHHHHHHHHHHHHH
Q 004943 583 ALHDTVQAREILRSSLTLA 601 (722)
Q Consensus 583 a~g~~~qA~~~l~~Al~lA 601 (722)
..|+.++|...++.++.+.
T Consensus 221 ~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 221 VFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HccCHHHHHHHHHHHHHHC
Confidence 9999999999999987653
No 65
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.28 E-value=4.8e-11 Score=117.85 Aligned_cols=201 Identities=11% Similarity=0.006 Sum_probs=145.6
Q ss_pred HHHHHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHH
Q 004943 407 LMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQ 486 (722)
Q Consensus 407 ~a~lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~ 486 (722)
.+..+..+|.++...|++++|.+.+.++++. .|+. +.+++.+|.++...|++++|+..|++++....+.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~---~~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--- 90 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE---NKED-----AIPYINFANLLSSVNELERALAFYDKALELDSSA--- 90 (243)
T ss_dssp --------------------CCTTHHHHHTT---CTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh---Cccc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc---
Confidence 5555677899999999999999999999873 3432 4678899999999999999999999998775432
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 004943 487 AMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGN 566 (722)
Q Consensus 487 A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd 566 (722)
..+..++|.++...|+++.+...++.+..... . ...+++.+|.++...|++++|..++.++++... .+
T Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-----~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~ 158 (243)
T 2q7f_A 91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM-----E----NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE---ND 158 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-----C----SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT---TC
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-----C----CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC---cc
Confidence 45678889999999999887777666554421 1 124688899999999999999999999998732 12
Q ss_pred hHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHHH
Q 004943 567 LQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 640 (722)
Q Consensus 567 ~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~ 640 (722)
..++..+|.++...|++++|.+.++.++.... + ...+...++.+|...|++++|.+.++...+.
T Consensus 159 ----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 159 ----TEARFQFGMCLANEGMLDEALSQFAAVTEQDP---G---HADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp ----HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCT---T---CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---c---cHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 34788999999999999999999999987632 2 2457789999999999999999988877654
No 66
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.28 E-value=4.7e-11 Score=141.23 Aligned_cols=171 Identities=15% Similarity=0.101 Sum_probs=144.0
Q ss_pred HHHHHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHH
Q 004943 407 LMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQ 486 (722)
Q Consensus 407 ~a~lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~ 486 (722)
.+..+.++|.++..+|++++|++.|++|+++ .|+. +.+++++|.++..+|++++|+..|++|+++..+.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l---~P~~-----~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~--- 76 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV---FPEF-----AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF--- 76 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---
Confidence 4667789999999999999999999999987 4543 4679999999999999999999999999875443
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 004943 487 AMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGN 566 (722)
Q Consensus 487 A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd 566 (722)
+.++.|+|.+|..+|+++++.+.++.+..+ .. . -+.+++++|.++..+|++++|..+|++||++.
T Consensus 77 ~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--~P---~----~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~------ 141 (723)
T 4gyw_A 77 ADAYSNMGNTLKEMQDVQGALQCYTRAIQI--NP---A----FADAHSNLASIHKDSGNIPEAIASYRTALKLK------ 141 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT---T----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC---C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------
Confidence 567899999999999998877766665544 11 1 24689999999999999999999999999982
Q ss_pred hHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHc
Q 004943 567 LQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKL 604 (722)
Q Consensus 567 ~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki 604 (722)
.....++..||.++...|+.++|.+.++.++.+..+.
T Consensus 142 -P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 142 -PDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp -SCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred -CCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence 1124688999999999999999999999999987653
No 67
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.27 E-value=9.4e-11 Score=118.21 Aligned_cols=205 Identities=9% Similarity=-0.052 Sum_probs=157.6
Q ss_pred HHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHH
Q 004943 348 LMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEA 427 (722)
Q Consensus 348 lls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA 427 (722)
+.-+.++...|++++|.+++++++.. ..+... ....+.++|.++...|++++|
T Consensus 41 ~~l~~~~~~~~~~~~A~~~~~~a~~~-------~~~~~~--------------------~~~~~~~lg~~~~~~~~~~~A 93 (272)
T 3u4t_A 41 NRRAVCYYELAKYDLAQKDIETYFSK-------VNATKA--------------------KSADFEYYGKILMKKGQDSLA 93 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT-------SCTTTC--------------------CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhc-------cCchhH--------------------HHHHHHHHHHHHHHcccHHHH
Confidence 33455777889999999999998764 122221 233346789999999999999
Q ss_pred HHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHH-HHHHhcCChhHH
Q 004943 428 QEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAA-VSYFCIGDAESS 506 (722)
Q Consensus 428 ~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla-~v~l~~G~~e~a 506 (722)
++.+.+++++.... +.++..+|.++...|++++|+..|++++.... ....++.++| .+|.. ++++.+
T Consensus 94 ~~~~~~a~~~~~~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~l~~~~~~~-~~~~~A 161 (272)
T 3u4t_A 94 IQQYQAAVDRDTTR--------LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT---TDPKVFYELGQAYYYN-KEYVKA 161 (272)
T ss_dssp HHHHHHHHHHSTTC--------THHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC---CCHHHHHHHHHHHHHT-TCHHHH
T ss_pred HHHHHHHHhcCccc--------HHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC---CcHHHHHHHHHHHHHH-HHHHHH
Confidence 99999999964322 24688999999999999999999988876632 2345678889 66665 687777
Q ss_pred HHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHHH
Q 004943 507 SQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQD---FQEARNRLAKGLQIAHNHMGN--LQLVSQYLTILGNLA 581 (722)
Q Consensus 507 ~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~---~~eAk~~L~qAL~la~~~~gd--~~l~a~~L~~LG~~~ 581 (722)
...++.+..... + -..+++.+|.++...|+ +++|..++++++++.. ..++ ......++..||.++
T Consensus 162 ~~~~~~a~~~~p--~-------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~ 231 (272)
T 3u4t_A 162 DSSFVKVLELKP--N-------IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCA-PGGAKYKDELIEANEYIAYYY 231 (272)
T ss_dssp HHHHHHHHHHST--T-------CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHG-GGGGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc--c-------chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHh-cccccchHHHHHHHHHHHHHH
Confidence 766666554411 1 13567788999998999 9999999999999964 4555 345667899999999
Q ss_pred HhCCChHHHHHHHHHHHHHH
Q 004943 582 LALHDTVQAREILRSSLTLA 601 (722)
Q Consensus 582 ~a~g~~~qA~~~l~~Al~lA 601 (722)
...|++++|.+.++.++.+.
T Consensus 232 ~~~~~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 232 TINRDKVKADAAWKNILALD 251 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHhcC
Confidence 99999999999999999864
No 68
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.27 E-value=3.1e-08 Score=110.38 Aligned_cols=210 Identities=14% Similarity=0.001 Sum_probs=162.6
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHh----hCCHHHHHHHHH
Q 004943 357 KGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELT----RSGFVEAQEALV 432 (722)
Q Consensus 357 kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~----~g~~~eA~~~l~ 432 (722)
.+++++|.++++++++. |+ .....++|.++.. .+++++|.+.++
T Consensus 200 ~~~~~~A~~~~~~a~~~--------~~------------------------~~a~~~lg~~y~~g~g~~~~~~~A~~~~~ 247 (490)
T 2xm6_A 200 ERNDAISAQWYRKSATS--------GD------------------------ELGQLHLADMYYFGIGVTQDYTQSRVLFS 247 (490)
T ss_dssp CCCHHHHHHHHHHHHHT--------TC------------------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHC--------CC------------------------HHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 67889999999988754 22 1122457888885 899999999999
Q ss_pred HHHHHHHhCCchhhhhHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhc-----CCh
Q 004943 433 QMKNWFIRFPTILQACESMIEMLRGQYAHS----VGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCI-----GDA 503 (722)
Q Consensus 433 ~Al~l~~~~~d~~~~~~a~i~~llG~~~~a----lG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~-----G~~ 503 (722)
++.+. + .+.+.+.+|.++.. .+++++|+.+|+.++.. +...+..++|.+|... +++
T Consensus 248 ~a~~~----~------~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~-----~~~~a~~~Lg~~y~~~~~g~~~~~ 312 (490)
T 2xm6_A 248 QSAEQ----G------NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ-----GNSDGQYYLAHLYDKGAEGVAKNR 312 (490)
T ss_dssp HHHTT----T------CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT-----TCHHHHHHHHHHHHHCBTTBCCCH
T ss_pred HHHHC----C------CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHcCCCCCcCCH
Confidence 99873 2 24568889999888 89999999999988754 2245778899999886 566
Q ss_pred hHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 004943 504 ESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQ---DFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNL 580 (722)
Q Consensus 504 e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G---~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~ 580 (722)
+.+...+..+... . -..+++.+|.++...| ++.+|..+|++|++. |+ ..+...||.+
T Consensus 313 ~~A~~~~~~a~~~-------~----~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~-----~~----~~a~~~Lg~~ 372 (490)
T 2xm6_A 313 EQAISWYTKSAEQ-------G----DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK-----GE----KAAQFNLGNA 372 (490)
T ss_dssp HHHHHHHHHHHHT-------T----CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT-----TC----HHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-------C----CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC-----CC----HHHHHHHHHH
Confidence 6655555544332 1 1257888999998867 789999999999754 34 4688899999
Q ss_pred HHh----CCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH----cCCchhHhHHHHHHHHHH
Q 004943 581 ALA----LHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQ----LGDRGNEMENDEYRRKKL 641 (722)
Q Consensus 581 ~~a----~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~----~Gd~~~A~e~~~~~~~~~ 641 (722)
|.. .+++++|...++.|.. .++ ..+...|+.+|.. .+|+++|.++|+.+...-
T Consensus 373 y~~g~g~~~~~~~A~~~~~~A~~----~~~----~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 373 LLQGKGVKKDEQQAAIWMRKAAE----QGL----SAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHH----TTC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHh----CCC----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 999 8999999999999876 344 4577889999998 899999999999887764
No 69
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.26 E-value=4.6e-10 Score=115.45 Aligned_cols=217 Identities=6% Similarity=-0.041 Sum_probs=161.0
Q ss_pred HHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHH
Q 004943 347 DLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVE 426 (722)
Q Consensus 347 ylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~e 426 (722)
++.-+.++...|++++|.++++++++. ++.. ...+.++|.++...|++++
T Consensus 58 ~~~l~~~~~~~~~~~~A~~~~~~a~~~---------~~~~---------------------~~~~~~la~~~~~~~~~~~ 107 (327)
T 3cv0_A 58 WRSLGLTQAENEKDGLAIIALNHARML---------DPKD---------------------IAVHAALAVSHTNEHNANA 107 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTC---------------------HHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc---------CcCC---------------------HHHHHHHHHHHHHcCCHHH
Confidence 444566777889999999999999887 1111 1223456777888888888
Q ss_pred HHHHHHHHHHHHHhCCchhh-----------------------------------------hhHHHHHHHHHHHHHHhCC
Q 004943 427 AQEALVQMKNWFIRFPTILQ-----------------------------------------ACESMIEMLRGQYAHSVGC 465 (722)
Q Consensus 427 A~~~l~~Al~l~~~~~d~~~-----------------------------------------~~~a~i~~llG~~~~alG~ 465 (722)
|.+.+.++++.....+.... ...+.+++.+|.++...|+
T Consensus 108 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 187 (327)
T 3cv0_A 108 ALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNN 187 (327)
T ss_dssp HHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcc
Confidence 88888777764322211000 0124678899999999999
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCC
Q 004943 466 YSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQD 545 (722)
Q Consensus 466 ~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~ 545 (722)
+++|+..|++++....+. ..++.++|.++...|+++++...++.+..... . ...+++.+|.++...|+
T Consensus 188 ~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-----~----~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 188 YDSAAANLRRAVELRPDD---AQLWNKLGATLANGNRPQEALDAYNRALDINP-----G----YVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----T----CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----C----CHHHHHHHHHHHHHhcc
Confidence 999999999998775432 45678899999999999887776665544311 1 23478889999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCChHH------HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCC
Q 004943 546 FQEARNRLAKGLQIAHNHMGNLQL------VSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYD 606 (722)
Q Consensus 546 ~~eAk~~L~qAL~la~~~~gd~~l------~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D 606 (722)
+.+|..++++++++.. ...+... ...++..+|.++...|++++|...++.++....+-.+
T Consensus 256 ~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 321 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQV-GGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEFG 321 (327)
T ss_dssp HHHHHHHHHHHHHHHT-TSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCC-ccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchhhh
Confidence 9999999999999954 3333222 5678999999999999999999999999988876544
No 70
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.25 E-value=1.5e-10 Score=126.78 Aligned_cols=219 Identities=6% Similarity=-0.076 Sum_probs=169.7
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhC
Q 004943 343 YALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRS 422 (722)
Q Consensus 343 ~aLvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g 422 (722)
++-+|..-+.++...|++++|.+.+++++++ + +. ...++.++|.++...|
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l---------~-P~--------------------~~~a~~~~g~~l~~~g 145 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIEL---------N-AA--------------------NYTVWHFRRVLLKSLQ 145 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH---------C-TT--------------------CHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHh---------C-cc--------------------CHHHHHHHHHHHHHcc
Confidence 5566666777788899999999999999988 2 22 2334467899999999
Q ss_pred C-HHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcC
Q 004943 423 G-FVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIG 501 (722)
Q Consensus 423 ~-~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G 501 (722)
+ +++|++.+.+++++. |+. ..+++++|.++..+|++++|+..|++++.+-.+. ..++.++|.++...|
T Consensus 146 ~d~~eAl~~~~~al~l~---P~~-----~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~---~~a~~~lg~~~~~~g 214 (382)
T 2h6f_A 146 KDLHEEMNYITAIIEEQ---PKN-----YQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN---YHAWQHRQWVIQEFK 214 (382)
T ss_dssp CCHHHHHHHHHHHHHHC---TTC-----HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHC---CCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC---HHHHHHHHHHHHHcC
Confidence 7 999999999999863 432 4679999999999999999999999999875432 567789999999999
Q ss_pred ChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHh-cCCHHHH-----HHHHHHHHHHHHHhcCChHHHHHHHH
Q 004943 502 DAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMR-QQDFQEA-----RNRLAKGLQIAHNHMGNLQLVSQYLT 575 (722)
Q Consensus 502 ~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~-~G~~~eA-----k~~L~qAL~la~~~~gd~~l~a~~L~ 575 (722)
+++++...++.+..+ ..+ -..+++.+|.++.. .|.+++| ..++++|+++. -.+ ..+.+
T Consensus 215 ~~~eAl~~~~~al~l--~P~-------~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~---P~~----~~a~~ 278 (382)
T 2h6f_A 215 LWDNELQYVDQLLKE--DVR-------NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV---PHN----ESAWN 278 (382)
T ss_dssp CCTTHHHHHHHHHHH--CTT-------CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS---TTC----HHHHH
T ss_pred ChHHHHHHHHHHHHh--CCC-------CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC---CCC----HHHHH
Confidence 998766666555443 111 23678999999998 6665888 48999999882 222 35888
Q ss_pred HHHHHHHhCC--ChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcC
Q 004943 576 ILGNLALALH--DTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLG 625 (722)
Q Consensus 576 ~LG~~~~a~g--~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~G 625 (722)
.+|.++...| +.++|.+.++.+ +.-++ -.|++..|+.+|...|
T Consensus 279 ~l~~ll~~~g~~~~~~a~~~~~~~----~~~p~---~~~al~~La~~~~~~~ 323 (382)
T 2h6f_A 279 YLKGILQDRGLSKYPNLLNQLLDL----QPSHS---SPYLIAFLVDIYEDML 323 (382)
T ss_dssp HHHHHHTTTCGGGCHHHHHHHHHH----TTTCC---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCccchHHHHHHHHHh----ccCCC---CHHHHHHHHHHHHHHh
Confidence 9999999988 688888877654 33333 3789999999999886
No 71
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.24 E-value=7.9e-10 Score=107.21 Aligned_cols=203 Identities=10% Similarity=-0.042 Sum_probs=156.7
Q ss_pred HHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCC
Q 004943 344 ALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSG 423 (722)
Q Consensus 344 aLvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~ 423 (722)
+-+++.-+..+...|++++|.++++++++. ++.. ...+..+|.++...|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---------~~~~---------------------~~~~~~l~~~~~~~~~ 57 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKS---------DPKN---------------------ELAWLVRAEIYQYLKV 57 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTC---------------------HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHh---------Cccc---------------------hHHHHHHHHHHHHcCC
Confidence 445666677888899999999999999887 1111 1223557999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCC
Q 004943 424 FVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSV-GCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGD 502 (722)
Q Consensus 424 ~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~al-G~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~ 502 (722)
+++|.+.+.+++++. |+. +.++..+|.++... |++++|+..|+.++. .........++.++|.++...|+
T Consensus 58 ~~~A~~~~~~a~~~~---~~~-----~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~ 128 (225)
T 2vq2_A 58 NDKAQESFRQALSIK---PDS-----AEINNNYGWFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQ 128 (225)
T ss_dssp HHHHHHHHHHHHHHC---TTC-----HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHhC---CCC-----hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCC
Confidence 999999999999863 332 35688899999999 999999999999987 32333456677899999999999
Q ss_pred hhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 004943 503 AESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLAL 582 (722)
Q Consensus 503 ~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~ 582 (722)
++.+...++.+..... . ...+++.+|.++...|++.+|..+++++++... ..+ ..++..++.++.
T Consensus 129 ~~~A~~~~~~~~~~~~-----~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~----~~~~~~~~~~~~ 193 (225)
T 2vq2_A 129 FGLAEAYLKRSLAAQP-----Q----FPPAFKELARTKMLAGQLGDADYYFKKYQSRVE--VLQ----ADDLLLGWKIAK 193 (225)
T ss_dssp HHHHHHHHHHHHHHST-----T----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC--SCC----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-----C----CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCC----HHHHHHHHHHHH
Confidence 9887666665544311 1 135788899999999999999999999998721 022 234678889999
Q ss_pred hCCChHHHHHHHHHHHHH
Q 004943 583 ALHDTVQAREILRSSLTL 600 (722)
Q Consensus 583 a~g~~~qA~~~l~~Al~l 600 (722)
..|+.++|...++.+...
T Consensus 194 ~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 194 ALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHh
Confidence 999999999988877653
No 72
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.24 E-value=1.8e-10 Score=117.05 Aligned_cols=209 Identities=14% Similarity=0.058 Sum_probs=157.6
Q ss_pred HHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHH
Q 004943 410 FLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMC 489 (722)
Q Consensus 410 lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~a 489 (722)
.+.++|..+...|+|++|++.++++++.. |+. ...+.+++.+|.++..+|++++|+..|+.+++...+......+
T Consensus 17 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~---p~~--~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 17 EAFERAMEFYNQGKYDRAIEYFKAVFTYG---RTH--EWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHGGGC---SCS--TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC---CCC--cchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 34578999999999999999999988753 443 2236789999999999999999999999999987655566678
Q ss_pred HHHHHHHHHh--------cCChhHHHHHHHHhcchhcccccccCh--------HHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 004943 490 HAYAAVSYFC--------IGDAESSSQAIDLIGPVYQMKDTINGV--------REEASLHFAYGLLLMRQQDFQEARNRL 553 (722)
Q Consensus 490 llnla~v~l~--------~G~~e~a~~aL~l~~~l~r~~~~~~~~--------~~~A~al~~lG~~~~~~G~~~eAk~~L 553 (722)
+.++|.+|.. .|+++.+...++.+...+......... ...+..++.+|.++...|++.+|...|
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 8999999998 788777666666554442211100000 001122388999999999999999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHhC----------CChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH
Q 004943 554 AKGLQIAHNHMGNLQLVSQYLTILGNLALAL----------HDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQ 623 (722)
Q Consensus 554 ~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~----------g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~ 623 (722)
+++++.. .+......++..+|.++... |++++|...++.++... ++.+.-..+...|++++..
T Consensus 172 ~~~l~~~----p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~a~~~l~~~~~~ 244 (261)
T 3qky_A 172 EAVFDAY----PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF---PDSPLLRTAEELYTRARQR 244 (261)
T ss_dssp HHHHHHC----TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC---TTCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHC----CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC---CCChHHHHHHHHHHHHHHH
Confidence 9999872 23344567899999999987 88899999999887654 5555556677888888888
Q ss_pred cCCchhH
Q 004943 624 LGDRGNE 630 (722)
Q Consensus 624 ~Gd~~~A 630 (722)
.|+.+++
T Consensus 245 ~~~~~~~ 251 (261)
T 3qky_A 245 LTELEGD 251 (261)
T ss_dssp HHHHHTC
T ss_pred HHHhhhh
Confidence 7766544
No 73
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.24 E-value=1.1e-09 Score=111.59 Aligned_cols=188 Identities=15% Similarity=0.076 Sum_probs=155.3
Q ss_pred HHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhhcchhH
Q 004943 410 FLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHS----VGCYSEAAFHYVEAAKITESKSM 485 (722)
Q Consensus 410 lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~a----lG~~~~Al~~f~~AL~l~~~~~~ 485 (722)
.+..+|.++...|++++|++.++++++ |+ .+.+++.+|.++.. .|++++|+.+|++++..-
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~-----~~-----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----- 72 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACD-----LK-----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN----- 72 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-----TT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH-----CC-----CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-----
Confidence 345689999999999999999999998 22 23568899999999 999999999999998762
Q ss_pred HHHHHHHHHHHHHh----cCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHH
Q 004943 486 QAMCHAYAAVSYFC----IGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMR----QQDFQEARNRLAKGL 557 (722)
Q Consensus 486 ~A~allnla~v~l~----~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~----~G~~~eAk~~L~qAL 557 (722)
...+..++|.+|.. .|+++.+...++.+... . -..+++.+|.++.. .|++++|..++++|+
T Consensus 73 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-------~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~ 141 (273)
T 1ouv_A 73 YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL-------K----YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKAC 141 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------T----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc-------C----CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHH
Confidence 45677899999999 88888766666554432 1 23578899999999 999999999999998
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHHh----CCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH----cCCchh
Q 004943 558 QIAHNHMGNLQLVSQYLTILGNLALA----LHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQ----LGDRGN 629 (722)
Q Consensus 558 ~la~~~~gd~~l~a~~L~~LG~~~~a----~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~----~Gd~~~ 629 (722)
+. ++ ..+...||.++.. .+++++|.+.++.|+.. ++ ..+...|+.+|.. .|++++
T Consensus 142 ~~-----~~----~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~~~~g~~~~~~~~~ 204 (273)
T 1ouv_A 142 DL-----ND----GDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KD----SPGCFNAGNMYHHGEGATKNFKE 204 (273)
T ss_dssp HT-----TC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTCSSCCCHHH
T ss_pred hc-----Cc----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCCCCCccHHH
Confidence 75 22 3577899999999 99999999999999864 44 3577889999999 999999
Q ss_pred HhHHHHHHHHH
Q 004943 630 EMENDEYRRKK 640 (722)
Q Consensus 630 A~e~~~~~~~~ 640 (722)
|.++++.+.+.
T Consensus 205 A~~~~~~a~~~ 215 (273)
T 1ouv_A 205 ALARYSKACEL 215 (273)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 99999877654
No 74
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.23 E-value=2.2e-10 Score=115.24 Aligned_cols=231 Identities=13% Similarity=0.021 Sum_probs=168.2
Q ss_pred hhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHHHHHH
Q 004943 353 LGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALV 432 (722)
Q Consensus 353 ~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~~l~ 432 (722)
.....|++++|.++++++++. . ....+. ...++.++|.++...|++++|++.+.
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~----~--~~~~~~--------------------~~~~~~~l~~~~~~~~~~~~A~~~~~ 67 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILAS----R--ALTDDE--------------------RAQLLYERGVLYDSLGLRALARNDFS 67 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTS----S--CCCHHH--------------------HHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccCccchHHHHHHHHHHHHhc----c--cccCch--------------------hHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 344567888888888888665 1 011111 34445678999999999999999999
Q ss_pred HHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 004943 433 QMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDL 512 (722)
Q Consensus 433 ~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l 512 (722)
+++++ .|+. +.+++.+|.++...|++++|+..|+.++....+. ..++.++|.+|...|+++.+...++.
T Consensus 68 ~al~~---~~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~ 136 (275)
T 1xnf_A 68 QALAI---RPDM-----PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY---NYAHLNRGIALYYGGRDKLAQDDLLA 136 (275)
T ss_dssp HHHHH---CCCC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---THHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHc---CCCc-----HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccc---cHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 99986 3432 3568899999999999999999999999875443 46778899999999999887766666
Q ss_pred hcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHH
Q 004943 513 IGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQARE 592 (722)
Q Consensus 513 ~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~ 592 (722)
+...... . . .... ..+ .....|++++|...+.+++.... .+. ....++..+...++.++|.+
T Consensus 137 a~~~~~~---~--~--~~~~--~~~-~~~~~~~~~~A~~~~~~~~~~~~---~~~-----~~~~~~~~~~~~~~~~~a~~ 198 (275)
T 1xnf_A 137 FYQDDPN---D--P--FRSL--WLY-LAEQKLDEKQAKEVLKQHFEKSD---KEQ-----WGWNIVEFYLGNISEQTLME 198 (275)
T ss_dssp HHHHCTT---C--H--HHHH--HHH-HHHHHHCHHHHHHHHHHHHHHSC---CCS-----THHHHHHHHTTSSCHHHHHH
T ss_pred HHHhCCC---C--h--HHHH--HHH-HHHHhcCHHHHHHHHHHHHhcCC---cch-----HHHHHHHHHHHhcCHHHHHH
Confidence 5544211 1 1 2222 222 23567999999999999988722 121 12347777888899999999
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHHH
Q 004943 593 ILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 640 (722)
Q Consensus 593 ~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~ 640 (722)
.++.++....+.. +....+...++.+|...|++++|.+.++.....
T Consensus 199 ~~~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 199 RLKADATDNTSLA--EHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHHHCCSHHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhccccccc--ccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 9888877655432 123567889999999999999999988877654
No 75
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.21 E-value=2.4e-10 Score=135.17 Aligned_cols=170 Identities=17% Similarity=0.039 Sum_probs=142.9
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHH
Q 004943 449 ESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVRE 528 (722)
Q Consensus 449 ~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~ 528 (722)
-+.+++++|.++..+|++++|+..|++|+++..+. +.++.|+|.+|..+|+++++...++.+..+ .. .
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~---~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P-------~ 75 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF---AAAHSNLASVLQQQGKLQEALMHYKEAIRI--SP-------T 75 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT-------T
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC-------C
Confidence 36789999999999999999999999999886543 567899999999999998877766665544 11 1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChh
Q 004943 529 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIP 608 (722)
Q Consensus 529 ~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~ 608 (722)
-+.+++++|.++..+|++++|..+|++|+++. ...+.+++.||.++...|++++|++.++.|+.+. ++-
T Consensus 76 ~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~-------P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~---P~~- 144 (723)
T 4gyw_A 76 FADAYSNMGNTLKEMQDVQGALQCYTRAIQIN-------PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK---PDF- 144 (723)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SCC-
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC-
Confidence 34689999999999999999999999999982 1225689999999999999999999999999873 332
Q ss_pred HHHHHHHHHHHHHHHcCCchhHhHHHHHHHHHHHH
Q 004943 609 TQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDE 643 (722)
Q Consensus 609 ~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~ 643 (722)
..++..|+.++...|+.++|.+.++...+...+
T Consensus 145 --~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 145 --PDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp --HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred --hHHHhhhhhHHHhcccHHHHHHHHHHHHHhChh
Confidence 568899999999999999999998887776554
No 76
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.21 E-value=8e-10 Score=105.54 Aligned_cols=166 Identities=15% Similarity=0.130 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHH
Q 004943 450 SMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREE 529 (722)
Q Consensus 450 a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~ 529 (722)
+.+++.+|.++...|+|++|+..|++++++..+. ..++.++|.+|...|+++.+...+..+..... . .
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-----~----~ 72 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNN---VETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-----T----S 72 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-----C----C
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-----h----h
Confidence 5789999999999999999999999999875443 45678899999999999876666655544311 1 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhH
Q 004943 530 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPT 609 (722)
Q Consensus 530 A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~ 609 (722)
..++..+|..+...+++.+|...+.+++++.. .+ ..+...+|.++...|++++|.+.++.++.+- ++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~---~~----~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~---p~--- 139 (184)
T 3vtx_A 73 AEAYYILGSANFMIDEKQAAIDALQRAIALNT---VY----ADAYYKLGLVYDSMGEHDKAIEAYEKTISIK---PG--- 139 (184)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT---
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---cc----hHHHHHHHHHHHHhCCchhHHHHHHHHHHhc---ch---
Confidence 35778889999999999999999999988721 12 3578899999999999999999999999762 22
Q ss_pred HHHHHHHHHHHHHHcCCchhHhHHHHHHHHH
Q 004943 610 QIWALSVLTALYQQLGDRGNEMENDEYRRKK 640 (722)
Q Consensus 610 q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~ 640 (722)
...+...+|.+|...|++++|.+.|+.+.+.
T Consensus 140 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 140 FIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 2568889999999999999999999887654
No 77
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.20 E-value=1.7e-10 Score=114.29 Aligned_cols=161 Identities=14% Similarity=0.033 Sum_probs=124.4
Q ss_pred HHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHH
Q 004943 410 FLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMC 489 (722)
Q Consensus 410 lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~a 489 (722)
.+.++|.++...|+|++|++.+.+++++... ++ ..+++.+|.++...|++++|+..|+.+++...+ ...+
T Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~ 78 (228)
T 4i17_A 9 QLKNEGNDALNAKNYAVAFEKYSEYLKLTNN-QD------SVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN---LANA 78 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-CC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS---HHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhccCC-CC------cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc---hHHH
Confidence 3457899999999999999999999987531 11 245777999999999999999999999876544 4567
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHH
Q 004943 490 HAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQL 569 (722)
Q Consensus 490 llnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l 569 (722)
+.++|.+|...|+++.+...++.+....... .......+.+++.+|.++...|++++|...+++++++. ....
T Consensus 79 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----p~~~ 151 (228)
T 4i17_A 79 YIGKSAAYRDMKNNQEYIATLTEGIKAVPGN--ATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-----SKKW 151 (228)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-----CHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCc--HHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-----CCcc
Confidence 8899999999999988776666655442211 11112245789999999999999999999999998871 1111
Q ss_pred HHHHHHHHHHHHHhCCCh
Q 004943 570 VSQYLTILGNLALALHDT 587 (722)
Q Consensus 570 ~a~~L~~LG~~~~a~g~~ 587 (722)
.+.++..||.++...|+.
T Consensus 152 ~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 152 KTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 367889999999887765
No 78
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.12 E-value=1.7e-09 Score=109.73 Aligned_cols=203 Identities=8% Similarity=-0.061 Sum_probs=152.5
Q ss_pred HHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHH
Q 004943 346 VDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFV 425 (722)
Q Consensus 346 vylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~ 425 (722)
.++--+..+...|++++|.++++++++. ....+. ...++.++|.++...|+|+
T Consensus 17 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~-------~p~~~~--------------------~~~a~~~lg~~~~~~~~~~ 69 (261)
T 3qky_A 17 EAFERAMEFYNQGKYDRAIEYFKAVFTY-------GRTHEW--------------------AADAQFYLARAYYQNKEYL 69 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHGGG-------CSCSTT--------------------HHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHh-------CCCCcc--------------------hHHHHHHHHHHHHHhCcHH
Confidence 4455577888899999999999998776 111111 2344567899999999999
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHH--------hCCHHHHHHHHHHHHHhhcchhHHHHHH-------
Q 004943 426 EAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHS--------VGCYSEAAFHYVEAAKITESKSMQAMCH------- 490 (722)
Q Consensus 426 eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~a--------lG~~~~Al~~f~~AL~l~~~~~~~A~al------- 490 (722)
+|++.++++++++-..|. .+.+++.+|.++.. .|++++|+..|++++....+......+.
T Consensus 70 ~A~~~~~~~l~~~p~~~~-----~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~ 144 (261)
T 3qky_A 70 LAASEYERFIQIYQIDPR-----VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELR 144 (261)
T ss_dssp HHHHHHHHHHHHCTTCTT-----HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCch-----hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHH
Confidence 999999999997544433 35779999999999 9999999999999998765543222232
Q ss_pred -------HHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhc----------CCHHHHHHHH
Q 004943 491 -------AYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQ----------QDFQEARNRL 553 (722)
Q Consensus 491 -------lnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~----------G~~~eAk~~L 553 (722)
.++|.+|...|+++.+...++.+...+... . . ...+++.+|.++... |++++|...+
T Consensus 145 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~--~--~--~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~ 218 (261)
T 3qky_A 145 AKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDT--P--W--ADDALVGAMRAYIAYAEQSVRARQPERYRRAVELY 218 (261)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS--T--T--HHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC--c--h--HHHHHHHHHHHHHHhcccchhhcccchHHHHHHHH
Confidence 788999999999988777776655442211 1 1 345788889888866 9999999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHH
Q 004943 554 AKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQA 590 (722)
Q Consensus 554 ~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA 590 (722)
+++++.. -+......+...|+.++...++.+++
T Consensus 219 ~~~~~~~----p~~~~~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 219 ERLLQIF----PDSPLLRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHC----TTCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHC----CCChHHHHHHHHHHHHHHHHHHhhhh
Confidence 9998872 34455667888888888877766543
No 79
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.11 E-value=9.1e-10 Score=123.39 Aligned_cols=196 Identities=9% Similarity=-0.010 Sum_probs=153.2
Q ss_pred HHHHHHHHHhhccCCCh-HHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhC
Q 004943 344 ALVDLMVVILGRPKGLF-KECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRS 422 (722)
Q Consensus 344 aLvylls~~~~~~kg~~-~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g 422 (722)
+-+++.-+..+...|++ ++|+++++++++. ++. ...++.++|.++...|
T Consensus 102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~---------~p~---------------------~~~a~~~lg~~~~~~g 151 (474)
T 4abn_A 102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKL---------EPE---------------------LVEAWNQLGEVYWKKG 151 (474)
T ss_dssp HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH---------CTT---------------------CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHhh---------CCC---------------------CHHHHHHHHHHHHHcC
Confidence 44566668888899999 9999999999988 222 1233467899999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHh---------CCHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 004943 423 GFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSV---------GCYSEAAFHYVEAAKITESKSMQAMCHAYA 493 (722)
Q Consensus 423 ~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~al---------G~~~~Al~~f~~AL~l~~~~~~~A~allnl 493 (722)
++++|++.+++++++. |+ +.+++.+|.++... |++++|+..|++++.+..+. ..++.++
T Consensus 152 ~~~~A~~~~~~al~~~---p~------~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 219 (474)
T 4abn_A 152 DVTSAHTCFSGALTHC---KN------KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD---GRSWYIL 219 (474)
T ss_dssp CHHHHHHHHHHHHTTC---CC------HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC---HHHHHHH
T ss_pred CHHHHHHHHHHHHhhC---CC------HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC---HHHHHHH
Confidence 9999999999999863 44 26789999999999 99999999999999875443 4567888
Q ss_pred HHHHHhc--------CChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 004943 494 AVSYFCI--------GDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMG 565 (722)
Q Consensus 494 a~v~l~~--------G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~g 565 (722)
|.+|... |+++++...++.+..+... ....+.+++.+|.++...|++++|...|++|+++.- .
T Consensus 220 g~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p---~ 290 (474)
T 4abn_A 220 GNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRK------ASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP---A 290 (474)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG------GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---T
T ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHhCCC------cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---C
Confidence 9999888 7777766666555444110 001346899999999999999999999999999822 1
Q ss_pred ChHHHHHHHHHHHHHHHhCCChHHHHHHH
Q 004943 566 NLQLVSQYLTILGNLALALHDTVQAREIL 594 (722)
Q Consensus 566 d~~l~a~~L~~LG~~~~a~g~~~qA~~~l 594 (722)
+ ..++..+|.++...|+.++|.+.+
T Consensus 291 ~----~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 291 W----PEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp C----HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred C----HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2 357889999999988888877643
No 80
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.10 E-value=9.9e-09 Score=103.06 Aligned_cols=228 Identities=12% Similarity=0.004 Sum_probs=159.6
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhC
Q 004943 343 YALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRS 422 (722)
Q Consensus 343 ~aLvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g 422 (722)
.+-+++.-+.++...|++++|.+++++++.. ++.. ..++.++|.++...|
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---------~~~~---------------------~~~~~~la~~~~~~~ 91 (275)
T 1xnf_A 42 RAQLLYERGVLYDSLGLRALARNDFSQALAI---------RPDM---------------------PEVFNYLGIYLTQAG 91 (275)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CCCC---------------------HHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHc---------CCCc---------------------HHHHHHHHHHHHHcc
Confidence 4556666788888999999999999999987 1121 223356899999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCC
Q 004943 423 GFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGD 502 (722)
Q Consensus 423 ~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~ 502 (722)
++++|++.+.+++++. |+. +.+++.+|.++...|++++|...|+++++...+... .. ..++.. ...|+
T Consensus 92 ~~~~A~~~~~~al~~~---~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~--~~~~~~-~~~~~ 159 (275)
T 1xnf_A 92 NFDAAYEAFDSVLELD---PTY-----NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPF-RS--LWLYLA-EQKLD 159 (275)
T ss_dssp CHHHHHHHHHHHHHHC---TTC-----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HH--HHHHHH-HHHHC
T ss_pred CHHHHHHHHHHHHhcC---ccc-----cHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChH-HH--HHHHHH-HHhcC
Confidence 9999999999999973 332 356889999999999999999999999987655431 11 222222 45578
Q ss_pred hhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 004943 503 AESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLAL 582 (722)
Q Consensus 503 ~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~ 582 (722)
++.+...+........ + .. ..+.++..+...++..+|...+.++++.... .....+.++..+|.++.
T Consensus 160 ~~~A~~~~~~~~~~~~--~-~~-------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~la~~~~ 226 (275)
T 1xnf_A 160 EKQAKEVLKQHFEKSD--K-EQ-------WGWNIVEFYLGNISEQTLMERLKADATDNTS---LAEHLSETNFYLGKYYL 226 (275)
T ss_dssp HHHHHHHHHHHHHHSC--C-CS-------THHHHHHHHTTSSCHHHHHHHHHHHCCSHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC--c-ch-------HHHHHHHHHHHhcCHHHHHHHHHHHhccccc---ccccccHHHHHHHHHHH
Confidence 7776655544333211 1 11 1234667778899999999999999887442 22334678999999999
Q ss_pred hCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHH
Q 004943 583 ALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMEND 634 (722)
Q Consensus 583 a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~ 634 (722)
..|++++|...++.++.+. -.+... .+.++...|+.++|.+.+
T Consensus 227 ~~g~~~~A~~~~~~al~~~--p~~~~~-------~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 227 SLGDLDSATALFKLAVANN--VHNFVE-------HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HTTCHHHHHHHHHHHHTTC--CTTCHH-------HHHHHHHHHHHHHC----
T ss_pred HcCCHHHHHHHHHHHHhCC--chhHHH-------HHHHHHHHHHHHhhHHHH
Confidence 9999999999999998753 112211 134455666666666654
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.08 E-value=3.4e-09 Score=104.93 Aligned_cols=161 Identities=16% Similarity=0.066 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHH
Q 004943 450 SMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREE 529 (722)
Q Consensus 450 a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~ 529 (722)
+..++..|.++...|++++|+..|.+++........ .+..++|.++...|+++.+...++.+.... + .-
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~al~~~------p---~~ 75 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDS--VTAYNCGVCADNIKKYKEAADYFDIAIKKN------Y---NL 75 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT------C---SH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCc--HHHHHHHHHHHHhhcHHHHHHHHHHHHHhC------c---ch
Confidence 467899999999999999999999999988741222 455678999999999988776666554431 1 14
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChh
Q 004943 530 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMG-NLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIP 608 (722)
Q Consensus 530 A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~g-d~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~ 608 (722)
..+++.+|.++..+|++++|...+++++++.-. .. -....+.++..+|.++...|++++|++.++.|+.+ ++.
T Consensus 76 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~ 149 (228)
T 4i17_A 76 ANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV-----TSK 149 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-----SCH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc-----CCC
Confidence 568899999999999999999999999998321 11 12335578999999999999999999999999876 221
Q ss_pred -HHHHHHHHHHHHHHHcCCc
Q 004943 609 -TQIWALSVLTALYQQLGDR 627 (722)
Q Consensus 609 -~q~~al~~L~~l~~~~Gd~ 627 (722)
.-..+...|+.+|...|+.
T Consensus 150 ~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 150 KWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHH
Confidence 0356788889999888876
No 82
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.03 E-value=2.1e-08 Score=100.00 Aligned_cols=177 Identities=10% Similarity=0.040 Sum_probs=126.4
Q ss_pred HHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHH
Q 004943 410 FLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMC 489 (722)
Q Consensus 410 lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~a 489 (722)
.+.++|..+...|+|++|++.++++++. .|+. .....+++.+|.++...|++++|...|+++++...+......+
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~---~p~~--~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a 80 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNR---YPFG--PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 80 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTS--TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCC--hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHH
Confidence 3467899999999999999999999985 3432 1234678999999999999999999999999887665555567
Q ss_pred HHHHHHHHHhc------------------CChhHHHHHHHHhcchhcccccccChH-----------HHHHHHHHHHHHH
Q 004943 490 HAYAAVSYFCI------------------GDAESSSQAIDLIGPVYQMKDTINGVR-----------EEASLHFAYGLLL 540 (722)
Q Consensus 490 llnla~v~l~~------------------G~~e~a~~aL~l~~~l~r~~~~~~~~~-----------~~A~al~~lG~~~ 540 (722)
+.++|.++... |+++.+...++.+...+. ++.... ..+...+.+|..+
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P---~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~ 157 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYP---NSQYTTDATKRLVFLKDRLAKYEYSVAEYY 157 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCT---TCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCc---CChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888887653 344444444444433322 111110 0112336778888
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 004943 541 MRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSL 598 (722)
Q Consensus 541 ~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al 598 (722)
..+|++.+|...|+++++..- +......++..+|.++...|+.++|.+.++...
T Consensus 158 ~~~~~~~~A~~~~~~~l~~~p----~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~ 211 (225)
T 2yhc_A 158 TERGAWVAVVNRVEGMLRDYP----DTQATRDALPLMENAYRQMQMNAQAEKVAKIIA 211 (225)
T ss_dssp HHHTCHHHHHHHHHHHHHHST----TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHcCcHHHHHHHHHHHHHHCc----CCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 889999999999999887721 224445788889999999999999988877543
No 83
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.02 E-value=5.3e-09 Score=97.72 Aligned_cols=170 Identities=9% Similarity=0.052 Sum_probs=135.7
Q ss_pred HHHHHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHH
Q 004943 407 LMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQ 486 (722)
Q Consensus 407 ~a~lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~ 486 (722)
....+.++|.++...|++++|++.+.++++. .|+ .+.+++.+|.++...|++++|...|.+++....+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--- 75 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDA---DAF-----DVDVALHLGIAYVKTGAVDRGTELLERSLADAPDN--- 75 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCT---TSC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---Ccc-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---
Confidence 3444567899999999999999999888764 232 24678899999999999999999999998774432
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 004943 487 AMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGN 566 (722)
Q Consensus 487 A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd 566 (722)
..++.++|.++...|+++.+.+.++.+..... . ...+++.+|.++...|++++|..++.++++... .+
T Consensus 76 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~ 143 (186)
T 3as5_A 76 VKVATVLGLTYVQVQKYDLAVPLLIKVAEANP-----I----NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP---NE 143 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----T----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-----H----hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc---cc
Confidence 45678889999999999887766665544411 1 235778899999999999999999999998731 12
Q ss_pred hHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Q 004943 567 LQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKK 603 (722)
Q Consensus 567 ~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkk 603 (722)
..++..+|.++...|++++|.+.++.++.+...
T Consensus 144 ----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 176 (186)
T 3as5_A 144 ----GKVHRAIAFSYEQMGRHEEALPHFKKANELDEG 176 (186)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred ----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 467889999999999999999999999987643
No 84
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.00 E-value=9e-09 Score=116.39 Aligned_cols=151 Identities=9% Similarity=-0.032 Sum_probs=125.5
Q ss_pred HhhHHHHHhhCCHHHHHHHHHHHHHHHHhC-CchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHH
Q 004943 412 ENKVAVELTRSGFVEAQEALVQMKNWFIRF-PTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCH 490 (722)
Q Consensus 412 e~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~-~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~al 490 (722)
.+.+..+..+|+|++|+..+++++++..+. |+. ....+.+++++|.++..+|+|++|+.+|++++.+...
T Consensus 313 le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~-Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~-------- 383 (490)
T 3n71_A 313 LEKIDKARSEGLYHEVVKLCRECLEKQEPVFADT-NLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMK-------- 383 (490)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTT-SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH--------
Confidence 344556778999999999999999999884 331 1346788999999999999999999999877753211
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC-hHH
Q 004943 491 AYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGN-LQL 569 (722)
Q Consensus 491 lnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd-~~l 569 (722)
..| + .++ ..|.+++++|.+|..+|++++|..++++||++..+.+|. +..
T Consensus 384 --------~lG-------------~-------~Hp--~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~ 433 (490)
T 3n71_A 384 --------LYH-------------H-------NNA--QLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPI 433 (490)
T ss_dssp --------HSC-------------T-------TCH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHH
T ss_pred --------HcC-------------C-------CCH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChH
Confidence 111 1 121 378899999999999999999999999999998888887 889
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Q 004943 570 VSQYLTILGNLALALHDTVQAREILRSSLTLA 601 (722)
Q Consensus 570 ~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lA 601 (722)
++..+..|+..+..+|.+++|+.+++.+.+-|
T Consensus 434 ~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 434 TKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998777
No 85
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.99 E-value=2.3e-08 Score=104.65 Aligned_cols=194 Identities=12% Similarity=-0.036 Sum_probs=141.1
Q ss_pred HHHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHH
Q 004943 409 QFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAM 488 (722)
Q Consensus 409 ~lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~ 488 (722)
..+..++..+...|++++|++.+++++..- ..|+. +.+++.+|.++...|++++|+..|++ +....
T Consensus 66 ~a~~~la~~~~~~~~~~~A~~~l~~ll~~~-~~P~~-----~~~~~~la~~~~~~g~~~~Al~~l~~--------~~~~~ 131 (291)
T 3mkr_A 66 QAVRMFAEYLASHSRRDAIVAELDREMSRS-VDVTN-----TTFLLMAASIYFYDQNPDAALRTLHQ--------GDSLE 131 (291)
T ss_dssp HHHHHHHHHHHCSTTHHHHHHHHHHHHHSC-CCCSC-----HHHHHHHHHHHHHTTCHHHHHHHHTT--------CCSHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHhcc-cCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHhC--------CCCHH
Confidence 344557888999999999999998877520 13553 35689999999999999999999964 22234
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChH
Q 004943 489 CHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQ 568 (722)
Q Consensus 489 allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~ 568 (722)
+..++|.+|...|+++.+...++.+.... ++ .. ...-+.++. ..+...|++++|...|+++++. . .+
T Consensus 132 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~-~~-~~~l~~a~~---~l~~~~~~~~eA~~~~~~~l~~-~---p~-- 198 (291)
T 3mkr_A 132 CMAMTVQILLKLDRLDLARKELKKMQDQD--ED-AT-LTQLATAWV---SLAAGGEKLQDAYYIFQEMADK-C---SP-- 198 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-CH-HHHHHHHHH---HHHHCTTHHHHHHHHHHHHHHH-S---CC--
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cC-cH-HHHHHHHHH---HHHhCchHHHHHHHHHHHHHHh-C---CC--
Confidence 66788999999999998777777665541 11 11 001112222 2233569999999999999987 2 12
Q ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhH-hHHHHH
Q 004943 569 LVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNE-MENDEY 636 (722)
Q Consensus 569 l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A-~e~~~~ 636 (722)
.+.+++.+|.++...|++++|+..++.|+.+- ++- ..++..++.++...|+..++ .++++.
T Consensus 199 -~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~---p~~---~~~l~~l~~~~~~~g~~~eaa~~~~~~ 260 (291)
T 3mkr_A 199 -TLLLLNGQAACHMAQGRWEAAEGVLQEALDKD---SGH---PETLINLVVLSQHLGKPPEVTNRYLSQ 260 (291)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTC---HHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC---HHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 35689999999999999999999999999764 332 44678889999999998764 454443
No 86
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.99 E-value=4.6e-09 Score=115.00 Aligned_cols=194 Identities=10% Similarity=-0.100 Sum_probs=150.9
Q ss_pred HHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhhcchhHHHH
Q 004943 410 FLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGC-YSEAAFHYVEAAKITESKSMQAM 488 (722)
Q Consensus 410 lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~-~~~Al~~f~~AL~l~~~~~~~A~ 488 (722)
++.++|.++...|++++|++.+.+++++ .|+. ..+++.+|.++..+|+ +++|+..|++++.+..+. ..
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l---~P~~-----~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~---~~ 167 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIEL---NAAN-----YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN---YQ 167 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHH---CTTC-----HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC---HH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHh---CccC-----HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC---HH
Confidence 3456899999999999999999999986 3442 4679999999999997 999999999999875443 56
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChH
Q 004943 489 CHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQ 568 (722)
Q Consensus 489 allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~ 568 (722)
++.++|.++...|+++++...++.+..+ .++ -..+++.+|.++...|++++|..+++++|++ . -.+
T Consensus 168 a~~~~g~~~~~~g~~~eAl~~~~kal~l--dP~-------~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l-~--P~~-- 233 (382)
T 2h6f_A 168 VWHHRRVLVEWLRDPSQELEFIADILNQ--DAK-------NYHAWQHRQWVIQEFKLWDNELQYVDQLLKE-D--VRN-- 233 (382)
T ss_dssp HHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTT-------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH-C--TTC--
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--Ccc-------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-C--CCC--
Confidence 7899999999999998766666555443 111 2368899999999999999999999999998 2 222
Q ss_pred HHHHHHHHHHHHHHh-CCChHHH-----HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcC--CchhHhHHHHH
Q 004943 569 LVSQYLTILGNLALA-LHDTVQA-----REILRSSLTLAKKLYDIPTQIWALSVLTALYQQLG--DRGNEMENDEY 636 (722)
Q Consensus 569 l~a~~L~~LG~~~~a-~g~~~qA-----~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~G--d~~~A~e~~~~ 636 (722)
..+++.+|.++.. .|..++| .+.++.|+.+. ++- ..+...|+.++...| +..+|.+.++.
T Consensus 234 --~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~---P~~---~~a~~~l~~ll~~~g~~~~~~a~~~~~~ 301 (382)
T 2h6f_A 234 --NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV---PHN---ESAWNYLKGILQDRGLSKYPNLLNQLLD 301 (382)
T ss_dssp --HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS---TTC---HHHHHHHHHHHTTTCGGGCHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC---CCC---HHHHHHHHHHHHccCccchHHHHHHHHH
Confidence 3588999999999 6665888 47788887753 222 346677888888888 56777665543
No 87
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.97 E-value=1.1e-08 Score=119.98 Aligned_cols=200 Identities=12% Similarity=0.011 Sum_probs=147.5
Q ss_pred ccCCChHHHHHHHHHHHHHHHHHHHhcC-CCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHHHHHHH
Q 004943 355 RPKGLFKECMQRIQSGMQTIQDALLKLG-ITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQ 433 (722)
Q Consensus 355 ~~kg~~~kA~k~~~~AL~~i~~~~~~lg-~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~~l~~ 433 (722)
...|++++|.+.++++++.. +...+ ..+. ...++.++|.++...|++++|++.+++
T Consensus 402 ~~~~~~~~A~~~~~~al~~~---~~~~~~~~p~--------------------~~~~~~~~a~~~~~~g~~~~A~~~~~~ 458 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGA---LDADGVDFSE--------------------SVELPLMEVRALLDLGDVAKATRKLDD 458 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC----------CCTT--------------------CSHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhc---cccccccccc--------------------chhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 77899999999999998321 11111 1121 122235679999999999999999999
Q ss_pred HHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 004943 434 MKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLI 513 (722)
Q Consensus 434 Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~ 513 (722)
++++. |+. +.+++++|.++...|++++|+..|++++++..+. ..++.|+|.+|...|++++ .+.++.+
T Consensus 459 al~~~---p~~-----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~---~~~~~~lg~~~~~~g~~~~-~~~~~~a 526 (681)
T 2pzi_A 459 LAERV---GWR-----WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGE---LAPKLALAATAELAGNTDE-HKFYQTV 526 (681)
T ss_dssp HHHHH---CCC-----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC---SHHHHHHHHHHHHHTCCCT-TCHHHHH
T ss_pred HhccC---cch-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCChHH-HHHHHHH
Confidence 99863 332 4579999999999999999999999999876543 4567899999999999987 6666655
Q ss_pred cchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHH-HH
Q 004943 514 GPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQA-RE 592 (722)
Q Consensus 514 ~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA-~~ 592 (722)
..+ .+ . -+.+++++|.++...|++++|...|++|+++. .....++..+|.+++..|+.+++ .+
T Consensus 527 l~~--~P---~----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-------P~~~~a~~~~~~~~~~~~~~~~~~~~ 590 (681)
T 2pzi_A 527 WST--ND---G----VISAAFGLARARSAEGDRVGAVRTLDEVPPTS-------RHFTTARLTSAVTLLSGRSTSEVTEE 590 (681)
T ss_dssp HHH--CT---T----CHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTS-------TTHHHHHHHHHHHTC-------CCHH
T ss_pred HHh--CC---c----hHHHHHHHHHHHHHcCCHHHHHHHHHhhcccC-------cccHHHHHHHHHHHHccCCCCCCCHH
Confidence 443 11 1 23578999999999999999999999998772 22346778999999888887776 78
Q ss_pred HHHHHHHHHHHcC
Q 004943 593 ILRSSLTLAKKLY 605 (722)
Q Consensus 593 ~l~~Al~lAkki~ 605 (722)
-+++|.....++.
T Consensus 591 ~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 591 QIRDAARRVEALP 603 (681)
T ss_dssp HHHHHHHHHHTSC
T ss_pred HHHHHHHHHhhCC
Confidence 8888888888874
No 88
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.95 E-value=2.2e-08 Score=93.47 Aligned_cols=168 Identities=14% Similarity=0.071 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHH
Q 004943 449 ESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVRE 528 (722)
Q Consensus 449 ~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~ 528 (722)
.+..++.+|.++...|++++|...|++++....+. ..++.++|.++...|+++.+...++.+..... .
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-----~---- 74 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFD---VDVALHLGIAYVKTGAVDRGTELLERSLADAP-----D---- 74 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----T----
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----C----
Confidence 45778899999999999999999998776554332 46678889999999999886666665544311 1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChh
Q 004943 529 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIP 608 (722)
Q Consensus 529 ~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~ 608 (722)
...+++.+|.++...|++++|..++.++++... .+ ..++..+|.++...|++++|.+.++.++... ++.
T Consensus 75 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~- 143 (186)
T 3as5_A 75 NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANP---IN----FNVRFRLGVALDNLGRFDEAIDSFKIALGLR---PNE- 143 (186)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---TC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTC-
T ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc---Hh----HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC---ccc-
Confidence 235788899999999999999999999998822 12 3578899999999999999999999998763 222
Q ss_pred HHHHHHHHHHHHHHHcCCchhHhHHHHHHHHHH
Q 004943 609 TQIWALSVLTALYQQLGDRGNEMENDEYRRKKL 641 (722)
Q Consensus 609 ~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~ 641 (722)
..+...++.++...|++++|.+.++......
T Consensus 144 --~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 144 --GKVHRAIAFSYEQMGRHEEALPHFKKANELD 174 (186)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 5678899999999999999999888776543
No 89
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.88 E-value=2.1e-08 Score=99.07 Aligned_cols=175 Identities=11% Similarity=0.052 Sum_probs=124.0
Q ss_pred HHHHHHhhccCCChHHHHHHHHHHHHHHHHHHH---hcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCC
Q 004943 347 DLMVVILGRPKGLFKECMQRIQSGMQTIQDALL---KLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSG 423 (722)
Q Consensus 347 ylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~---~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~ 423 (722)
.+-.+......|++++|..+++++++.--+... ..+.... .. +...+..++|.++...|+
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~--------~~---------~~~~~~~~lg~~~~~~g~ 69 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKN--------SE---------ISSKLATELALAYKKNRN 69 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTT--------SH---------HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcch--------hh---------hhHHHHHHHHHHHHHCCC
Confidence 345677788899999999999999987211100 0000000 00 012233458999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCCh
Q 004943 424 FVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDA 503 (722)
Q Consensus 424 ~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~ 503 (722)
+++|++.+++++++ .|+. +.+++.+|.++...|++++|+..|++++.+..+. ..++.++|.+|...|+.
T Consensus 70 ~~~A~~~~~~al~~---~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~lg~~~~~~~~~ 138 (208)
T 3urz_A 70 YDKAYLFYKELLQK---APNN-----VDCLEACAEMQVCRGQEKDALRMYEKILQLEADN---LAANIFLGNYYYLTAEQ 138 (208)
T ss_dssp HHHHHHHHHHHHHH---CTTC-----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHHhHH
Confidence 99999999999986 3442 3568999999999999999999999999875443 45778999998876654
Q ss_pred hH--HHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 004943 504 ES--SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQI 559 (722)
Q Consensus 504 e~--a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~l 559 (722)
+. +...+..+.. ... ...+++..|..+...|++.+|..+|++|+++
T Consensus 139 ~~~~~~~~~~~~~~--------~~~--~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 139 EKKKLETDYKKLSS--------PTK--MQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHC---C--------CCH--HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhC--------CCc--hhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 32 3333222211 111 3356777899999999999999999999988
No 90
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.87 E-value=1.7e-07 Score=98.12 Aligned_cols=159 Identities=12% Similarity=-0.049 Sum_probs=115.7
Q ss_pred HHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHH
Q 004943 411 LENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCH 490 (722)
Q Consensus 411 Le~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~al 490 (722)
+..+|.++...|++++|++.+.+ |+. ..++..+|.++..+|++++|...|+.+++...+.. ...
T Consensus 104 ~~~la~~~~~~g~~~~Al~~l~~--------~~~-----~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~---~~~ 167 (291)
T 3mkr_A 104 LLMAASIYFYDQNPDAALRTLHQ--------GDS-----LECMAMTVQILLKLDRLDLARKELKKMQDQDEDAT---LTQ 167 (291)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTT--------CCS-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHhC--------CCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcH---HHH
Confidence 34579999999999999999887 442 34688899999999999999999999988754432 111
Q ss_pred HHHHHHH--HhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChH
Q 004943 491 AYAAVSY--FCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQ 568 (722)
Q Consensus 491 lnla~v~--l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~ 568 (722)
+..+++. ...|+++++...++.+... .++ -+.+++.+|.++..+|++++|...|+++|++. -
T Consensus 168 l~~a~~~l~~~~~~~~eA~~~~~~~l~~---~p~------~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~---p---- 231 (291)
T 3mkr_A 168 LATAWVSLAAGGEKLQDAYYIFQEMADK---CSP------TLLLLNGQAACHMAQGRWEAAEGVLQEALDKD---S---- 231 (291)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHH---SCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---T----
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHh---CCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---C----
Confidence 1112222 2335566555555544333 111 23689999999999999999999999999882 1
Q ss_pred HHHHHHHHHHHHHHhCCChHH-HHHHHHHHHHHH
Q 004943 569 LVSQYLTILGNLALALHDTVQ-AREILRSSLTLA 601 (722)
Q Consensus 569 l~a~~L~~LG~~~~a~g~~~q-A~~~l~~Al~lA 601 (722)
.-+.++..+|.++...|+..+ +..+++.++.+.
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 224578999999999999976 567888876543
No 91
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.86 E-value=5.8e-08 Score=109.78 Aligned_cols=112 Identities=8% Similarity=-0.115 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHc--C
Q 004943 529 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGN-LQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKL--Y 605 (722)
Q Consensus 529 ~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd-~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki--~ 605 (722)
.+.+++++|.+|..+|++++|..+++++|++..+..|. +..++.++++||.+|..+|++++|+.++++|+++.++. +
T Consensus 350 ~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~ 429 (490)
T 3n71_A 350 VLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGP 429 (490)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 78899999999999999999999999999998888887 88999999999999999999999999999999999998 5
Q ss_pred ChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHHH
Q 004943 606 DIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 640 (722)
Q Consensus 606 D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~ 640 (722)
|.+.-......|+.++..+|.+.+|...|......
T Consensus 430 ~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 430 SHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666778899999999999998888877766433
No 92
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.82 E-value=2.1e-07 Score=92.73 Aligned_cols=177 Identities=12% Similarity=0.020 Sum_probs=133.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHH
Q 004943 450 SMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREE 529 (722)
Q Consensus 450 a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~ 529 (722)
+..++..|..+...|+|++|+..|++++....+......++.++|.+|...|+++.+...++.+...+... . ..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~---~---~~ 77 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH---P---NI 77 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---T---TH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC---C---cH
Confidence 45688999999999999999999999998766555556678899999999999988777777665542211 1 12
Q ss_pred HHHHHHHHHHHHh------------------cCCHHHHHHHHHHHHHHHHHhcCChHH------------HHHHHHHHHH
Q 004943 530 ASLHFAYGLLLMR------------------QQDFQEARNRLAKGLQIAHNHMGNLQL------------VSQYLTILGN 579 (722)
Q Consensus 530 A~al~~lG~~~~~------------------~G~~~eAk~~L~qAL~la~~~~gd~~l------------~a~~L~~LG~ 579 (722)
..+++.+|.++.. +|++++|...|+++++..- .+..-. .+.....+|.
T Consensus 78 ~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P--~~~~a~~a~~~l~~~~~~~~~~~~~~a~ 155 (225)
T 2yhc_A 78 DYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYP--NSQYTTDATKRLVFLKDRLAKYEYSVAE 155 (225)
T ss_dssp HHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCT--TCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCc--CChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777777764 6899999999999987621 111111 1122357899
Q ss_pred HHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHH
Q 004943 580 LALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYR 637 (722)
Q Consensus 580 ~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~ 637 (722)
++...|++++|...++.++... ++.+....++..++.+|...|+.++|.+.++..
T Consensus 156 ~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l 210 (225)
T 2yhc_A 156 YYTERGAWVAVVNRVEGMLRDY---PDTQATRDALPLMENAYRQMQMNAQAEKVAKII 210 (225)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHS---TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHHHHC---cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 9999999999999999988764 333333568899999999999999999876543
No 93
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.79 E-value=3.7e-07 Score=95.34 Aligned_cols=191 Identities=13% Similarity=0.087 Sum_probs=136.7
Q ss_pred HHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCCh
Q 004943 424 FVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDA 503 (722)
Q Consensus 424 ~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~ 503 (722)
+++|...+++|++.+ .|+. ..++...|.+....|++++|...|+.+++...+... .++.++|.++.+.|+.
T Consensus 80 ~~~A~~~~~rAl~~~--~p~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~~~~~~~~~~~~~ 150 (308)
T 2ond_A 80 SDEAANIYERAISTL--LKKN-----MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT--LVYIQYMKFARRAEGI 150 (308)
T ss_dssp HHHHHHHHHHHHTTT--TTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTH--HHHHHHHHHHHHHHCH
T ss_pred hHHHHHHHHHHHHHh--Cccc-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCcc--HHHHHHHHHHHHhcCH
Confidence 489999999998832 2332 356888999999999999999999999986443221 3778889999999998
Q ss_pred hHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 004943 504 ESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLM-RQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLAL 582 (722)
Q Consensus 504 e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~-~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~ 582 (722)
+.+...++.+..... . . ..++...|.... ..|++++|+..|++|++..- + ...+...+|..+.
T Consensus 151 ~~A~~~~~~a~~~~p--~-~------~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p----~---~~~~~~~~~~~~~ 214 (308)
T 2ond_A 151 KSGRMIFKKAREDAR--T-R------HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG----D---IPEYVLAYIDYLS 214 (308)
T ss_dssp HHHHHHHHHHHTSTT--C-C------THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT----T---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC--C-C------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----C---cHHHHHHHHHHHH
Confidence 887777776654411 1 1 123444454433 37999999999999999832 1 2467789999999
Q ss_pred hCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHHHH
Q 004943 583 ALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKL 641 (722)
Q Consensus 583 a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~ 641 (722)
..|+.++|+..++.|+....--++....+| ..++......|+.++|...++.+.+..
T Consensus 215 ~~g~~~~A~~~~~~al~~~~l~p~~~~~l~--~~~~~~~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 215 HLNEDNNTRVLFERVLTSGSLPPEKSGEIW--ARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp TTCCHHHHHHHHHHHHHSSSSCGGGCHHHH--HHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHHHhccCCCHHHHHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 999999999999999864210111123344 445667788899999987766665544
No 94
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.78 E-value=3.1e-07 Score=91.12 Aligned_cols=159 Identities=10% Similarity=-0.055 Sum_probs=122.2
Q ss_pred HHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhC----CHHHHHHHHHHHHHhhcchhHH
Q 004943 411 LENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVG----CYSEAAFHYVEAAKITESKSMQ 486 (722)
Q Consensus 411 Le~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG----~~~~Al~~f~~AL~l~~~~~~~ 486 (722)
+.++|.++...+++++|++.++++.+. +-+.+++.+|.++.. | ++++|..+|+.|... +.
T Consensus 21 ~~~lg~~~~~~~~~~~A~~~~~~a~~~----------g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~-----g~ 84 (212)
T 3rjv_A 21 QYYLADTWVSSGDYQKAEYWAQKAAAQ----------GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA-----GS 84 (212)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHT----------TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT-----TC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC-----CC
Confidence 356899999999999999999999872 234678899999888 7 999999999988643 34
Q ss_pred HHHHHHHHHHHHh----cCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHH
Q 004943 487 AMCHAYAAVSYFC----IGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMR----QQDFQEARNRLAKGLQ 558 (722)
Q Consensus 487 A~allnla~v~l~----~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~----~G~~~eAk~~L~qAL~ 558 (722)
..+..++|.+|.. .++++.+...+..+... .+..+.+.+++.+|.++.. .+++.+|..+|++|++
T Consensus 85 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-------~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 85 KSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-------SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-------TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-------CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 5678899999986 55555555555544332 1100135789999999998 8899999999999965
Q ss_pred HHHHhcCChHHHHHHHHHHHHHHHhC-C-----ChHHHHHHHHHHHHH
Q 004943 559 IAHNHMGNLQLVSQYLTILGNLALAL-H-----DTVQAREILRSSLTL 600 (722)
Q Consensus 559 la~~~~gd~~l~a~~L~~LG~~~~a~-g-----~~~qA~~~l~~Al~l 600 (722)
. -++. .+...||.+|... | +.++|...++.|...
T Consensus 158 ~----~~~~----~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 158 L----SRTG----YAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp T----SCTT----HHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred c----CCCH----HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 4 1332 2678999999875 3 899999999988765
No 95
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.77 E-value=5.3e-08 Score=101.41 Aligned_cols=166 Identities=13% Similarity=0.018 Sum_probs=127.7
Q ss_pred HHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHH
Q 004943 411 LENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCH 490 (722)
Q Consensus 411 Le~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~al 490 (722)
+..+|..+...|++++|++.++++++. .|+. +.+++.+|.++...|++++|+..|++++....+ .....
T Consensus 120 ~~~~a~~~~~~g~~~~A~~~~~~al~~---~P~~-----~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~---~~~~~ 188 (287)
T 3qou_A 120 XAQQAMQLMQESNYTDALPLLXDAWQL---SNQN-----GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD---TRYQG 188 (287)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---TTSC-----HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS---HHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHh---CCcc-----hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc---hHHHH
Confidence 346799999999999999999999885 3442 356899999999999999999999877665443 23455
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHH
Q 004943 491 AYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLV 570 (722)
Q Consensus 491 lnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~ 570 (722)
.+.+..+...|+.+.+...++..... .++ -..+++.+|.++...|++++|...|+++++..- + ...
T Consensus 189 ~~~~~~l~~~~~~~~a~~~l~~al~~--~P~-------~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p---~--~~~ 254 (287)
T 3qou_A 189 LVAQIELLXQAADTPEIQQLQQQVAE--NPE-------DAALATQLALQLHQVGRNEEALELLFGHLRXDL---T--AAD 254 (287)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHH--CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---T--GGG
T ss_pred HHHHHHHHhhcccCccHHHHHHHHhc--CCc-------cHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc---c--ccc
Confidence 66677777777766554444443332 111 235789999999999999999999999999832 1 223
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Q 004943 571 SQYLTILGNLALALHDTVQAREILRSSLTLA 601 (722)
Q Consensus 571 a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lA 601 (722)
..+...||.++...|+.++|...+++++...
T Consensus 255 ~~a~~~l~~~~~~~g~~~~a~~~~r~al~~~ 285 (287)
T 3qou_A 255 GQTRXTFQEILAALGTGDALASXYRRQLYAL 285 (287)
T ss_dssp GHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Confidence 4678899999999999999999999998753
No 96
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.77 E-value=1.9e-08 Score=117.85 Aligned_cols=195 Identities=14% Similarity=0.030 Sum_probs=143.8
Q ss_pred HhhCCHHHHHHHHHHHHHHH-----HhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 004943 419 LTRSGFVEAQEALVQMKNWF-----IRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYA 493 (722)
Q Consensus 419 l~~g~~~eA~~~l~~Al~l~-----~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnl 493 (722)
...|++++|++.++++++.. ...|+. +.+++.+|..+...|++++|+..|+++++...+. ..++.++
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~-----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~l 473 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSES-----VELPLMEVRALLDLGDVAKATRKLDDLAERVGWR---WRLVWYR 473 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTC-----SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC---HHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccc-----hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcch---HHHHHHH
Confidence 78999999999999998321 223442 3568899999999999999999999999875443 5677899
Q ss_pred HHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHH
Q 004943 494 AVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQY 573 (722)
Q Consensus 494 a~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~ 573 (722)
|.+|...|+++++...++.+..+ .++ -+.+++++|.++..+|++++ ..+|++|+++.- . ...+
T Consensus 474 g~~~~~~g~~~~A~~~~~~al~l--~P~-------~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P---~----~~~a 536 (681)
T 2pzi_A 474 AVAELLTGDYDSATKHFTEVLDT--FPG-------ELAPKLALAATAELAGNTDE-HKFYQTVWSTND---G----VISA 536 (681)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--STT-------CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT---T----CHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCC-------ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC---c----hHHH
Confidence 99999999999877777665554 111 23578899999999999999 999999998821 1 2347
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhH-hHHHHHHHHHHHHH
Q 004943 574 LTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNE-MENDEYRRKKLDEL 644 (722)
Q Consensus 574 L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A-~e~~~~~~~~~~~l 644 (722)
+..||.++...|++++|.+.++.|+.+. ++ -..+...++.++...|+++++ .+.++.+.+....+
T Consensus 537 ~~~lg~~~~~~g~~~~A~~~~~~al~l~---P~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 537 AFGLARARSAEGDRVGAVRTLDEVPPTS---RH---FTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCTTS---TT---HHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhhcccC---cc---cHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 8999999999999999999999887653 22 245667788888776665444 45555555555444
No 97
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.76 E-value=8.6e-05 Score=83.30 Aligned_cols=194 Identities=14% Similarity=0.130 Sum_probs=137.3
Q ss_pred hCCHH-------HHHHHHHHHHH-HHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 004943 421 RSGFV-------EAQEALVQMKN-WFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAY 492 (722)
Q Consensus 421 ~g~~~-------eA~~~l~~Al~-l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~alln 492 (722)
.|+++ +|.+.++++++ + .|+. ..++...|.+....|++++|...|+.++....+.. +.++.+
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~---~p~~-----~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~~ 361 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTL---LKKN-----MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP--TLVYIQ 361 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTT---CSSC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCH--HHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHh---Cccc-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCc--hHHHHH
Confidence 78987 78888888876 3 3442 46788899999999999999999999998644322 346778
Q ss_pred HHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHHHHHhcCChHHHH
Q 004943 493 AAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLL-LMRQQDFQEARNRLAKGLQIAHNHMGNLQLVS 571 (722)
Q Consensus 493 la~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~-~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a 571 (722)
.|..+.+.|+.+.+...++.+..... ... ..+...|.+ +...|++++|+..|+++|+.. .+. .
T Consensus 362 ~~~~~~~~~~~~~A~~~~~~Al~~~~---~~~------~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~----p~~---~ 425 (530)
T 2ooe_A 362 YMKFARRAEGIKSGRMIFKKAREDAR---TRH------HVYVTAALMEYYCSKDKSVAFKIFELGLKKY----GDI---P 425 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCTT---CCT------HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH----TTC---H
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhccC---Cch------HHHHHHHHHHHHHcCChhHHHHHHHHHHHHC----CCC---H
Confidence 88888888888877777776654311 111 223333433 235899999999999999873 221 3
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHHHHH
Q 004943 572 QYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLD 642 (722)
Q Consensus 572 ~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~ 642 (722)
.+...++..+...|+.++|+..++.|+.....-++....+|.. ..+.....|+.+.+...+..+.+...
T Consensus 426 ~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~--~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 426 EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWAR--FLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHH--HHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 5678899999999999999999999987532222223445543 23445678999888877777666654
No 98
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.75 E-value=3.7e-07 Score=90.48 Aligned_cols=176 Identities=16% Similarity=0.066 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcC----
Q 004943 426 EAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIG---- 501 (722)
Q Consensus 426 eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G---- 501 (722)
+|.+.++++.+. +-+.+++.+|.++...+++++|..+|++|+.. +.+.+..++|.+|.. |
T Consensus 4 eA~~~~~~aa~~----------g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-----g~~~a~~~lg~~y~~-~g~~~ 67 (212)
T 3rjv_A 4 EPGSQYQQQAEA----------GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ-----GDGDALALLAQLKIR-NPQQA 67 (212)
T ss_dssp CTTHHHHHHHHT----------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----TCHHHHHHHHHHTTS-STTSC
T ss_pred hHHHHHHHHHHC----------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHc-CCCCC
Confidence 466667777652 33567999999999999999999999988764 345778899999988 6
Q ss_pred ChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 004943 502 DAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMR----QQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTIL 577 (722)
Q Consensus 502 ~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~----~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~L 577 (722)
+++.+...++..... + -+.+++.+|.++.. .+++.+|..+|++|.+. |+....+.+.+.|
T Consensus 68 ~~~~A~~~~~~A~~~-------g----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-----~~~~~~~~a~~~L 131 (212)
T 3rjv_A 68 DYPQARQLAEKAVEA-------G----SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-----SESDAAVDAQMLL 131 (212)
T ss_dssp CHHHHHHHHHHHHHT-------T----CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-----TTSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-------C----CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-----CCCcchHHHHHHH
Confidence 555544444443211 1 23578899999987 89999999999998654 4433456788999
Q ss_pred HHHHHh----CCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHc-C-----CchhHhHHHHHHHHH
Q 004943 578 GNLALA----LHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQL-G-----DRGNEMENDEYRRKK 640 (722)
Q Consensus 578 G~~~~a----~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~-G-----d~~~A~e~~~~~~~~ 640 (722)
|.+|.. .+++++|...++.|..+ -+++ .+...|+.+|... | |+++|..+|+.+.+.
T Consensus 132 g~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~----~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 132 GLIYASGVHGPEDDVKASEYFKGSSSL---SRTG----YAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHTSSSSCCHHHHHHHHHHHHHT---SCTT----HHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHc---CCCH----HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 999999 88999999999999754 2443 3678899999764 3 789999988877654
No 99
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.73 E-value=2.7e-08 Score=93.33 Aligned_cols=147 Identities=7% Similarity=0.014 Sum_probs=110.6
Q ss_pred hhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 004943 413 NKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAY 492 (722)
Q Consensus 413 ~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~alln 492 (722)
+||.++..+|++++|++.+.+++....+ .+..++.+|.++..+|+|++|+..|++++++..+. ..++.+
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~--------~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~---~~a~~~ 70 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQ--------KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD---PKAHRF 70 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHH--------HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcc--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHH
Confidence 4789999999999999998888775433 23457889999999999999999999999875443 567889
Q ss_pred HHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHHHHHhcCChHHHH
Q 004943 493 AAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEAR-NRLAKGLQIAHNHMGNLQLVS 571 (722)
Q Consensus 493 la~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk-~~L~qAL~la~~~~gd~~l~a 571 (722)
+|.+|...|+++.+...++.+..+ .++ -..+++.+|.++...|++.+|. .++++|+++. =.| .
T Consensus 71 lg~~~~~~~~~~~A~~~~~~al~~--~p~-------~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~---P~~----~ 134 (150)
T 4ga2_A 71 LGLLYELEENTDKAVECYRRSVEL--NPT-------QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF---PGS----P 134 (150)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTT-------CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS---TTC----H
T ss_pred HHHHHHHcCchHHHHHHHHHHHHh--CCC-------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC---cCC----H
Confidence 999999999998877776665554 111 2357899999999999998755 5579999982 222 3
Q ss_pred HHHHHHHHHHHhCCC
Q 004943 572 QYLTILGNLALALHD 586 (722)
Q Consensus 572 ~~L~~LG~~~~a~g~ 586 (722)
.++...+.++...|+
T Consensus 135 ~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 135 AVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCc
Confidence 467788888888774
No 100
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.68 E-value=7.2e-08 Score=92.19 Aligned_cols=163 Identities=9% Similarity=-0.026 Sum_probs=115.1
Q ss_pred HhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHH
Q 004943 412 ENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHA 491 (722)
Q Consensus 412 e~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~all 491 (722)
..+|..+...|++++|+..+++++++.-.. +.+++.+|.++...|++++|+..|+.++.... .. .. ..
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~--------~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~-~~--~~ 77 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDELQSR--------GDVKLAKADCLLETKQFELAQELLATIPLEYQ-DN-SY--KS 77 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHHHTS--------HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CH-HH--HH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCc--------HHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-Ch-HH--HH
Confidence 356889999999999999999998864332 45689999999999999999999988776544 11 11 11
Q ss_pred HHHHHHH-hcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHH
Q 004943 492 YAAVSYF-CIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLV 570 (722)
Q Consensus 492 nla~v~l-~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~ 570 (722)
..+.+.+ ..++...+...++.+... .++ -..+++.+|.++...|++++|...|+++++..- ....
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~al~~---~P~------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-----~~~~ 143 (176)
T 2r5s_A 78 LIAKLELHQQAAESPELKRLEQELAA---NPD------NFELACELAVQYNQVGRDEEALELLWNILKVNL-----GAQD 143 (176)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHH---STT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-----TTTT
T ss_pred HHHHHHHHhhcccchHHHHHHHHHHh---CCC------CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCc-----ccCh
Confidence 2232222 222222223333322222 111 235788999999999999999999999987721 1222
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q 004943 571 SQYLTILGNLALALHDTVQAREILRSSLTL 600 (722)
Q Consensus 571 a~~L~~LG~~~~a~g~~~qA~~~l~~Al~l 600 (722)
..++..||.++...|+.++|...+++++..
T Consensus 144 ~~a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 144 GEVKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp THHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 357889999999999999999999998764
No 101
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.68 E-value=1.3e-07 Score=107.48 Aligned_cols=157 Identities=8% Similarity=-0.009 Sum_probs=112.4
Q ss_pred hCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhc
Q 004943 421 RSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCI 500 (722)
Q Consensus 421 ~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~ 500 (722)
.|++++|++.+++++++. |+ .+.+++.+|.++...|++++|+..|+++++...+. ..++.++|.+|...
T Consensus 2 ~g~~~~A~~~~~~al~~~---p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~ 70 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR---PQ-----DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGH---PEAVARLGRVRWTQ 70 (568)
T ss_dssp ----------------------C-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC---HHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHHhC---CC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHC
Confidence 589999999999998763 33 23568999999999999999999999999875443 55778999999999
Q ss_pred CChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 004943 501 GDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNL 580 (722)
Q Consensus 501 G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~ 580 (722)
|+++++.+.++.+..... . .+.+++.+|.++...|++++|..+|++++++.- .+ ..++..+|.+
T Consensus 71 g~~~~A~~~~~~al~~~p-----~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~----~~~~~~l~~~ 134 (568)
T 2vsy_A 71 QRHAEAAVLLQQASDAAP-----E----HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP---EE----PYITAQLLNW 134 (568)
T ss_dssp TCHHHHHHHHHHHHHHCT-----T----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TC----HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCC-----C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CC----HHHHHHHHHH
Confidence 999887766666554411 1 245789999999999999999999999998822 12 3578899999
Q ss_pred HHhC---CChHHHHHHHHHHHHHHHHc
Q 004943 581 ALAL---HDTVQAREILRSSLTLAKKL 604 (722)
Q Consensus 581 ~~a~---g~~~qA~~~l~~Al~lAkki 604 (722)
+... |+.++|.+.++.++......
T Consensus 135 ~~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 135 RRRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp HHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred HHHhhccccHHHHHHHHHHHHhcCCcc
Confidence 9999 99999999999998876554
No 102
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.65 E-value=5.2e-07 Score=93.80 Aligned_cols=166 Identities=11% Similarity=0.028 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHH
Q 004943 451 MIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEA 530 (722)
Q Consensus 451 ~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A 530 (722)
..+..+|..+...|++++|+..|++++....+. ..++.++|.+++..|+++++...++.+..... + -.
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p---~------~~ 185 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQN---GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ---D------TR 185 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC---S------HH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc---hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc---c------hH
Confidence 457789999999999999999999998776543 45678899999999999998888877655411 1 22
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHH
Q 004943 531 SLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQ 610 (722)
Q Consensus 531 ~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q 610 (722)
......+..+..+|+..+|...|+++++.. .....++..||.++...|++++|++.++.++.......+
T Consensus 186 ~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-------P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~---- 254 (287)
T 3qou_A 186 YQGLVAQIELLXQAADTPEIQQLQQQVAEN-------PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAAD---- 254 (287)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGG----
T ss_pred HHHHHHHHHHHhhcccCccHHHHHHHHhcC-------CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccc----
Confidence 455666677778899999999999998872 122357889999999999999999999999987543322
Q ss_pred HHHHHHHHHHHHHcCCchhHhHHHHHHHH
Q 004943 611 IWALSVLTALYQQLGDRGNEMENDEYRRK 639 (722)
Q Consensus 611 ~~al~~L~~l~~~~Gd~~~A~e~~~~~~~ 639 (722)
..+...|+.++...|+.++|...|+....
T Consensus 255 ~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 255 GQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp GHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 45778899999999999999988877654
No 103
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.64 E-value=1.7e-07 Score=106.47 Aligned_cols=154 Identities=10% Similarity=-0.018 Sum_probs=109.1
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHHHHHHHHHH
Q 004943 357 KGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKN 436 (722)
Q Consensus 357 kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~~l~~Al~ 436 (722)
.|++++|.++++++++. + +. ....+.++|.++...|++++|++.++++++
T Consensus 2 ~g~~~~A~~~~~~al~~---------~-p~--------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 51 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH---------R-PQ--------------------DFVAWLMLADAELGMGDTTAGEMAVQRGLA 51 (568)
T ss_dssp -----------------------------C--------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHHh---------C-CC--------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 47788999999988876 1 11 123346789999999999999999999998
Q ss_pred HHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcch
Q 004943 437 WFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPV 516 (722)
Q Consensus 437 l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l 516 (722)
+ .|+. +.+++.+|.++...|++++|+..|+++++...+. ..++.++|.+|...|+++++.+.++.+...
T Consensus 52 ~---~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 120 (568)
T 2vsy_A 52 L---HPGH-----PEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH---PGIALWLGHALEDAGQAEAAAAAYTRAHQL 120 (568)
T ss_dssp T---STTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred h---CCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5 3332 4568999999999999999999999999875443 557789999999999998877777665544
Q ss_pred hcccccccChHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHH
Q 004943 517 YQMKDTINGVREEASLHFAYGLLLMRQ---QDFQEARNRLAKGLQIA 560 (722)
Q Consensus 517 ~r~~~~~~~~~~~A~al~~lG~~~~~~---G~~~eAk~~L~qAL~la 560 (722)
.. . ...++..+|.++..+ |++++|...++++++..
T Consensus 121 ~p-----~----~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 121 LP-----E----EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp CT-----T----CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred CC-----C----CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 11 1 235788899999999 99999999999999984
No 104
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.64 E-value=7.3e-07 Score=87.86 Aligned_cols=166 Identities=11% Similarity=-0.064 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHH----------------HHHHHHhcCChhHHHHHHHHhc
Q 004943 451 MIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAY----------------AAVSYFCIGDAESSSQAIDLIG 514 (722)
Q Consensus 451 ~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~alln----------------la~v~l~~G~~e~a~~aL~l~~ 514 (722)
..+...|..+...|++++|+..|++++....+. +.++.+ +|.+|...|+++.+...++.+.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 81 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDR---TEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL 81 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHH---HHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---hHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 346678999999999999999999998764432 223334 8999999999988777766655
Q ss_pred chhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHH
Q 004943 515 PVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREIL 594 (722)
Q Consensus 515 ~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l 594 (722)
.+ .+ . -..+++.+|.++...|++++|...|++++++. - ....++..||.+++..|+.+.
T Consensus 82 ~~--~p---~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---P----~~~~a~~~lg~~~~~~~~~~~----- 140 (208)
T 3urz_A 82 QK--AP---N----NVDCLEACAEMQVCRGQEKDALRMYEKILQLE---A----DNLAANIFLGNYYYLTAEQEK----- 140 (208)
T ss_dssp HH--CT---T----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---T----TCHHHHHHHHHHHHHHHHHHH-----
T ss_pred HH--CC---C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---C----CCHHHHHHHHHHHHHHhHHHH-----
Confidence 44 11 1 23678999999999999999999999999982 1 124588999999987664332
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHHH
Q 004943 595 RSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 640 (722)
Q Consensus 595 ~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~ 640 (722)
..+....+++..+....++...++..+...|++++|.++|+.+.+.
T Consensus 141 ~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 141 KKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 2222333333333334566677788888889999999988877654
No 105
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.62 E-value=2.1e-07 Score=90.34 Aligned_cols=137 Identities=13% Similarity=0.058 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHH
Q 004943 449 ESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVRE 528 (722)
Q Consensus 449 ~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~ 528 (722)
.+..++..|..+...|++++|+..|++++. . ...++.++|.+|...|+++.+...++.+.... + .
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~----~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~---~---- 69 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAVQD----P--HSRICFNIGCMYTILKNMTEAEKAFTRSINRD--K---H---- 69 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSSS----C--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T---T----
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHcC----C--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--c---c----
Confidence 456688999999999999999999987742 1 24588999999999999988666666554441 1 1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC----------ChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 004943 529 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMG----------NLQLVSQYLTILGNLALALHDTVQAREILRSSL 598 (722)
Q Consensus 529 ~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~g----------d~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al 598 (722)
-+.+++.+|.++...|++++|...+++++++.. ... .....+.++..+|.++...|++++|...++.++
T Consensus 70 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 70 LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR-GNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT-TCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-CccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 236789999999999999999999999999743 222 223456789999999999999999999999998
Q ss_pred HHH
Q 004943 599 TLA 601 (722)
Q Consensus 599 ~lA 601 (722)
.+.
T Consensus 149 ~~~ 151 (213)
T 1hh8_A 149 SMK 151 (213)
T ss_dssp TTC
T ss_pred HcC
Confidence 764
No 106
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.61 E-value=1.4e-06 Score=91.06 Aligned_cols=172 Identities=11% Similarity=0.080 Sum_probs=125.1
Q ss_pred HhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHH
Q 004943 412 ENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHA 491 (722)
Q Consensus 412 e~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~all 491 (722)
.++|.++...|++++|.+.|++++++ .|+.. ..++...|.+....|++++|...|+.|+...... ..++.
T Consensus 103 ~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~ 172 (308)
T 2ond_A 103 FAYADYEESRMKYEKVHSIYNRLLAI---EDIDP----TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR---HHVYV 172 (308)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTS---SSSCT----HHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC---THHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc---cccCc----cHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---HHHHH
Confidence 44688888899999999999999984 33321 1368889999999999999999999998764432 22223
Q ss_pred HHHHHH-HhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHH
Q 004943 492 YAAVSY-FCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLV 570 (722)
Q Consensus 492 nla~v~-l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~ 570 (722)
..+... ...|+++.+...++.+...+. + ...++..+|..+...|++++|+..|++|++.. .+ ++...
T Consensus 173 ~~a~~~~~~~~~~~~A~~~~~~al~~~p--~-------~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--~l-~p~~~ 240 (308)
T 2ond_A 173 TAALMEYYCSKDKSVAFKIFELGLKKYG--D-------IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG--SL-PPEKS 240 (308)
T ss_dssp HHHHHHHHTSCCHHHHHHHHHHHHHHHT--T-------CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS--SS-CGGGC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC--C-------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc--CC-CHHHH
Confidence 334332 236898887777776554421 1 23578889999999999999999999998751 01 21112
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcC
Q 004943 571 SQYLTILGNLALALHDTVQAREILRSSLTLAKKLY 605 (722)
Q Consensus 571 a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~ 605 (722)
......++......|+.++|...++.++...-+..
T Consensus 241 ~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 241 GEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence 34667778888889999999999999998765443
No 107
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.60 E-value=6.7e-07 Score=86.76 Aligned_cols=140 Identities=11% Similarity=0.090 Sum_probs=108.3
Q ss_pred HHHHHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHH
Q 004943 407 LMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQ 486 (722)
Q Consensus 407 ~a~lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~ 486 (722)
.+..+.++|.++...|+|++|++.+.+++ .| .+.+++.+|.++...|++++|+..|.+++....+ .
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~-----~~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~ 70 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAVQ-----DP------HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH---L 70 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSS-----SC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---C
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHc-----CC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---c
Confidence 34445678999999999999999999884 12 2468999999999999999999999999987543 2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccc-------cChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 004943 487 AMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTI-------NGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQI 559 (722)
Q Consensus 487 A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~-------~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~l 559 (722)
..++.++|.+|...|+++.+...++.+.......... ......+.+++.+|.++...|++++|..++++++++
T Consensus 71 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 71 AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 4677899999999999988666666554432211100 000124578999999999999999999999999988
Q ss_pred H
Q 004943 560 A 560 (722)
Q Consensus 560 a 560 (722)
.
T Consensus 151 ~ 151 (213)
T 1hh8_A 151 K 151 (213)
T ss_dssp C
T ss_pred C
Confidence 3
No 108
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.60 E-value=6.5e-07 Score=81.52 Aligned_cols=105 Identities=11% Similarity=0.099 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcC-C
Q 004943 528 EEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLY-D 606 (722)
Q Consensus 528 ~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~-D 606 (722)
+.|.++..+|..++.+|++++|..+|.+|+++- ...+.+++.+|.+|...|++++|.+.++.|+.+..+.. +
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-------p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 78 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-------PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRAD 78 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchh
Confidence 467899999999999999999999999999882 12246889999999999999999999999999988764 4
Q ss_pred hhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHH
Q 004943 607 IPTQIWALSVLTALYQQLGDRGNEMENDEYRRK 639 (722)
Q Consensus 607 ~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~ 639 (722)
......++..+|.+|...|++++|.++|+.+..
T Consensus 79 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 79 YKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 555567889999999999999999999887654
No 109
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.59 E-value=1.2e-06 Score=76.58 Aligned_cols=129 Identities=19% Similarity=0.142 Sum_probs=102.6
Q ss_pred HHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHH
Q 004943 411 LENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCH 490 (722)
Q Consensus 411 Le~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~al 490 (722)
+.++|.++...|++++|.+.+.++++. .|+. ..+++.+|.++...|++++|...|.+++....+. ..+.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~ 72 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL---DPRS-----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS---AEAW 72 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTC-----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc---CCcc-----hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc---hHHH
Confidence 356799999999999999999999875 3332 3567889999999999999999999988765432 3456
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 004943 491 AYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQI 559 (722)
Q Consensus 491 lnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~l 559 (722)
.++|.++...|+++.+...++.+..... . ...+++.+|.++...|++++|..++.++++.
T Consensus 73 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 73 YNLGNAYYKQGDYDEAIEYYQKALELDP-----R----SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHCT-----T----CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCC-----C----ChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 7889999999999887766665544311 1 1246788999999999999999999999876
No 110
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.57 E-value=1.7e-06 Score=75.61 Aligned_cols=131 Identities=21% Similarity=0.177 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHH
Q 004943 451 MIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEA 530 (722)
Q Consensus 451 ~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A 530 (722)
.+++.+|.++...|++++|+..|.+++....+. ..++.++|.++...|+++.+...++.+..... . ..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----~----~~ 69 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS---AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-----R----SA 69 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----T----CH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcc---hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-----C----ch
Confidence 357889999999999999999999998764332 34667789999999998877666665544311 1 12
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q 004943 531 SLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTL 600 (722)
Q Consensus 531 ~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~l 600 (722)
.+++.+|.++...|++++|...+.++++... .+ ..++..+|.++...|++++|.+.++.++..
T Consensus 70 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 70 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP---RS----AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT---TC----HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC---CC----hHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 4678899999999999999999999998732 12 346788999999999999999999998865
No 111
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.57 E-value=1.5e-06 Score=80.13 Aligned_cols=142 Identities=9% Similarity=-0.056 Sum_probs=107.1
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChH
Q 004943 448 CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVR 527 (722)
Q Consensus 448 ~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~ 527 (722)
..+..++.+|..+...|++++|...|..++....+. ..++.++|.++...|+++.+...++.+..... .
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-----~--- 79 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN---AIYYGNRSLAYLRTECYGYALGDATRAIELDK-----K--- 79 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----T---
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-----c---
Confidence 456778999999999999999999999998765433 45677889999998998876666655544311 1
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCC
Q 004943 528 EEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYD 606 (722)
Q Consensus 528 ~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D 606 (722)
-..+++.+|.++...|++++|..++.+++++.. .+ ..+.....++..+...|++++|.+.+..+..+..+...
T Consensus 80 -~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p---~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 152 (166)
T 1a17_A 80 -YIKGYYRRAASNMALGKFRAALRDYETVVKVKP---HD--KDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDI 152 (166)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---TC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred -cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC---CC--HHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhcccch
Confidence 235788889999999999999999999988722 22 23344556666688888999999999888888877654
No 112
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.57 E-value=5e-07 Score=94.81 Aligned_cols=199 Identities=9% Similarity=-0.045 Sum_probs=148.5
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHH-------HHHHHHhCCHHHHHHHHHHHHHhhcch----
Q 004943 415 VAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLR-------GQYAHSVGCYSEAAFHYVEAAKITESK---- 483 (722)
Q Consensus 415 g~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~ll-------G~~~~alG~~~~Al~~f~~AL~l~~~~---- 483 (722)
|.-+ .-+++++|.+.|.+++++--.. +-.+..+ |.+...++++.+++..++.++.+..+.
T Consensus 14 ~~~~-~~~d~~~A~~~F~~a~~~dP~~--------~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~ 84 (282)
T 4f3v_A 14 AVSM-LPMSEARSLDLFTEITNYDESA--------CDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNAR 84 (282)
T ss_dssp HHHH-TTTCHHHHHHHHHHHHHHCTTC--------HHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCE
T ss_pred Hhcc-cCCCHHHHHHHHHHHHHhChhh--------hHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhh
Confidence 3444 5899999999999999874333 3345555 777778888888888888776633211
Q ss_pred ----h----------HHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHH
Q 004943 484 ----S----------MQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEA 549 (722)
Q Consensus 484 ----~----------~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eA 549 (722)
+ ...-+.+..|.++...|+++++.+.++.+... . . +.. +.+++|.+++..|++++|
T Consensus 85 ~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~-------~-p-~~~-~~~~~a~l~~~~~r~~dA 154 (282)
T 4f3v_A 85 IAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA-------G-S-EHL-VAWMKAVVYGAAERWTDV 154 (282)
T ss_dssp EECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT-------T-C-HHH-HHHHHHHHHHHTTCHHHH
T ss_pred hccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------C-C-chH-HHHHHHHHHHHcCCHHHH
Confidence 1 23455566688888999999888888765542 1 1 244 889999999999999999
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHHHHHcCCch
Q 004943 550 RNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYD-IPTQIWALSVLTALYQQLGDRG 628 (722)
Q Consensus 550 k~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D-~~~q~~al~~L~~l~~~~Gd~~ 628 (722)
+.+|+++.+ ..+....+.+...||.++..+|++++|++.++++.. -+. +....-+...++.+++..|+.+
T Consensus 155 ~~~l~~a~~-----~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~----g~~~P~~~~da~~~~glaL~~lGr~d 225 (282)
T 4f3v_A 155 IDQVKSAGK-----WPDKFLAGAAGVAHGVAAANLALFTEAERRLTEAND----SPAGEACARAIAWYLAMARRSQGNES 225 (282)
T ss_dssp HHHHTTGGG-----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----STTTTTTHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhhc-----cCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc----CCCCccccHHHHHHHHHHHHHcCCHH
Confidence 999986633 335455667899999999999999999999998872 222 3325567788899999999999
Q ss_pred hHhHHHHHHHHHH
Q 004943 629 NEMENDEYRRKKL 641 (722)
Q Consensus 629 ~A~e~~~~~~~~~ 641 (722)
+|.+.|+......
T Consensus 226 eA~~~l~~a~a~~ 238 (282)
T 4f3v_A 226 AAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcC
Confidence 9999887766643
No 113
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.56 E-value=1.4e-07 Score=88.43 Aligned_cols=147 Identities=12% Similarity=0.043 Sum_probs=108.2
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHH
Q 004943 455 LRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHF 534 (722)
Q Consensus 455 llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~ 534 (722)
.+|.++.+.|++++|+..|+.++.. ......+..++|.+|...|+++.+...++.+..+ .+ . -+.+++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~---~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p---~----~~~a~~ 69 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPS---PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QE---R----DPKAHR 69 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCS---HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT---T----CHHHHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhccc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC---C----CHHHHH
Confidence 3688888999999999999866543 3345667788999999999998877777665554 11 1 236789
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHH-HHHHHHHHHHcCChhHHHHH
Q 004943 535 AYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREI-LRSSLTLAKKLYDIPTQIWA 613 (722)
Q Consensus 535 ~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~-l~~Al~lAkki~D~~~q~~a 613 (722)
.+|.++...|++++|..+|++++++.- ....++..||.++...|+.++|.+. ++.|+.+. ++- ..+
T Consensus 70 ~lg~~~~~~~~~~~A~~~~~~al~~~p-------~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~---P~~---~~~ 136 (150)
T 4ga2_A 70 FLGLLYELEENTDKAVECYRRSVELNP-------TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF---PGS---PAV 136 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS---TTC---HHH
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC---cCC---HHH
Confidence 999999999999999999999998821 1235788999999999998876654 58888764 222 335
Q ss_pred HHHHHHHHHHcCC
Q 004943 614 LSVLTALYQQLGD 626 (722)
Q Consensus 614 l~~L~~l~~~~Gd 626 (722)
....++++...|+
T Consensus 137 ~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 137 YKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhCc
Confidence 6677888888775
No 114
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.55 E-value=1.3e-06 Score=79.50 Aligned_cols=71 Identities=14% Similarity=0.200 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q 004943 530 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTL 600 (722)
Q Consensus 530 A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~l 600 (722)
+.+++++|.++..+|++++|...+.+|+++......+....+.++..||.++...|++++|.+.++.|+..
T Consensus 42 ~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 42 ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35788999999999999999999999999976555567788899999999999999999999999999874
No 115
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.53 E-value=1.6e-06 Score=79.86 Aligned_cols=141 Identities=12% Similarity=0.074 Sum_probs=110.4
Q ss_pred HHHHHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHH
Q 004943 407 LMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQ 486 (722)
Q Consensus 407 ~a~lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~ 486 (722)
.+..+.++|.++...|+|++|.+.+.+++++. |+. +.+++.+|.++...|++++|+..|.+++....+.
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---~~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~--- 80 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELN---PSN-----AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY--- 80 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCC-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---
Confidence 44556778999999999999999999999863 332 4668899999999999999999999999875433
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 004943 487 AMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGN 566 (722)
Q Consensus 487 A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd 566 (722)
..++.++|.++...|+++.+...++.+...... . ..+...+..+..+...|++.+|...+.++..+.. ....
T Consensus 81 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~---~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~ 152 (166)
T 1a17_A 81 IKGYYRRAASNMALGKFRAALRDYETVVKVKPH---D----KDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVD-SLDI 152 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---C----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC---C----HHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhc-ccch
Confidence 456788999999999998877777665554211 1 1445566777778889999999999999988864 3443
No 116
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.45 E-value=2.1e-06 Score=95.49 Aligned_cols=104 Identities=9% Similarity=-0.075 Sum_probs=96.0
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHc--CChhHHHHHHHHH
Q 004943 541 MRQQDFQEARNRLAKGLQIAHNHMGN-LQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKL--YDIPTQIWALSVL 617 (722)
Q Consensus 541 ~~~G~~~eAk~~L~qAL~la~~~~gd-~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki--~D~~~q~~al~~L 617 (722)
...|+|++|...++++|++..+.+|+ +..++.++++||.+|..+|++++|+.++++|+.+.++. ++.+.-+.+++.|
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 46799999999999999998777887 78899999999999999999999999999999999998 6677779999999
Q ss_pred HHHHHHcCCchhHhHHHHHHHHHHHHH
Q 004943 618 TALYQQLGDRGNEMENDEYRRKKLDEL 644 (722)
Q Consensus 618 ~~l~~~~Gd~~~A~e~~~~~~~~~~~l 644 (722)
|.+|..+|++++|...|+.+.++....
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~i~~~~ 415 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIAIMEVA 415 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988764
No 117
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.44 E-value=2e-07 Score=103.69 Aligned_cols=215 Identities=13% Similarity=0.057 Sum_probs=107.4
Q ss_pred HHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCH---HHH
Q 004943 351 VILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGF---VEA 427 (722)
Q Consensus 351 ~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~---~eA 427 (722)
+......|++++|.++++++.+. |+.+. +.++|.++...|++ ++|
T Consensus 10 a~~~~~~g~~~~A~~~~~~aa~~--------g~~~A------------------------~~~Lg~~y~~~g~~~d~~~A 57 (452)
T 3e4b_A 10 ANEALKRGDTVTAQQNYQQLAEL--------GYSEA------------------------QVGLADIQVGTRDPAQIKQA 57 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--------TCCTG------------------------GGTCC---------------
T ss_pred HHHHHhCCCHHHHHHHHHHHHHC--------CCHHH------------------------HHHHHHHHHccCCCCCHHHH
Confidence 44455678889999998887543 44332 23578888888888 899
Q ss_pred HHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH----
Q 004943 428 QEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVG-----CYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYF---- 498 (722)
Q Consensus 428 ~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG-----~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l---- 498 (722)
.+.|+++.+. .| .+++.+|.+....| ++++|+.+|++|+..- + ..+..++|.+|.
T Consensus 58 ~~~~~~A~~~---~~--------~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g-~----~~A~~~Lg~~y~~~~~ 121 (452)
T 3e4b_A 58 EATYRAAADT---SP--------RAQARLGRLLAAKPGATEAEHHEAESLLKKAFANG-E----GNTLIPLAMLYLQYPH 121 (452)
T ss_dssp ------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTT-C----SSCHHHHHHHHHHCGG
T ss_pred HHHHHHHHhC---CH--------HHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCC-C----HHHHHHHHHHHHhCCC
Confidence 9998888865 23 33677788555555 8889999998887631 1 113444444444
Q ss_pred -------------------------------hcCChhH-HHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcC--
Q 004943 499 -------------------------------CIGDAES-SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQ-- 544 (722)
Q Consensus 499 -------------------------------~~G~~e~-a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G-- 544 (722)
..+.++. ...+....... . ..+. .+++.+|.++...|
T Consensus 122 ~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a----~-~~~~----~a~~~Lg~~~~~~g~~ 192 (452)
T 3e4b_A 122 SFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAA----L-NTTD----ICYVELATVYQKKQQP 192 (452)
T ss_dssp GCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHH----T-TTCT----THHHHHHHHHHHTTCH
T ss_pred CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHH----H-cCCH----HHHHHHHHHHHHcCCc
Confidence 4333322 11111111111 0 0111 27888999999999
Q ss_pred -CHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhC----CChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 004943 545 -DFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALAL----HDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTA 619 (722)
Q Consensus 545 -~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~----g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~ 619 (722)
++.+|...|++|.+. |+ ..++.++.||.+|... +++++|.+.++.|. -++ ..+...|+.
T Consensus 193 ~~~~~A~~~~~~aa~~-----g~--~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-----~g~----~~a~~~Lg~ 256 (452)
T 3e4b_A 193 EQQAELLKQMEAGVSR-----GT--VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-----PGY----PASWVSLAQ 256 (452)
T ss_dssp HHHHHHHHHHHHHHHT-----TC--SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-----GGS----THHHHHHHH
T ss_pred ccHHHHHHHHHHHHHC-----CC--HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-----CCC----HHHHHHHHH
Confidence 899999999888654 22 2234445666666554 46666666666654 222 234455555
Q ss_pred H-H--HHcCCchhHhHHHHHHH
Q 004943 620 L-Y--QQLGDRGNEMENDEYRR 638 (722)
Q Consensus 620 l-~--~~~Gd~~~A~e~~~~~~ 638 (722)
+ | ...||+++|.++|+.+.
T Consensus 257 ~~~~~~~~~d~~~A~~~~~~Aa 278 (452)
T 3e4b_A 257 LLYDFPELGDVEQMMKYLDNGR 278 (452)
T ss_dssp HHHHSGGGCCHHHHHHHHHHHH
T ss_pred HHHhCCCCCCHHHHHHHHHHHH
Confidence 5 3 34555555655555443
No 118
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.44 E-value=2.3e-06 Score=81.63 Aligned_cols=163 Identities=13% Similarity=-0.013 Sum_probs=118.5
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHH
Q 004943 453 EMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASL 532 (722)
Q Consensus 453 ~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~a 532 (722)
....|..+...|++++|+..|++++....+ ...++.++|.++...|+++++...++.+..... +. . .
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p------~~--~--~ 75 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQS---RGDVKLAKADCLLETKQFELAQELLATIPLEYQ------DN--S--Y 75 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHT---SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC------CH--H--H
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC------Ch--H--H
Confidence 567788899999999999999877765433 356678899999999999888888876654311 11 2 1
Q ss_pred HHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHH
Q 004943 533 HFAYGLLL-MRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQI 611 (722)
Q Consensus 533 l~~lG~~~-~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~ 611 (722)
....|.+. ...+...+|...+++++++. -.+ ..++..+|.++...|++++|...++.++...-...+ .
T Consensus 76 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~---P~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~----~ 144 (176)
T 2r5s_A 76 KSLIAKLELHQQAAESPELKRLEQELAAN---PDN----FELACELAVQYNQVGRDEEALELLWNILKVNLGAQD----G 144 (176)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHS---TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTT----T
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHhC---CCC----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccCh----H
Confidence 22223222 23334456889999998872 112 367889999999999999999999998875322222 3
Q ss_pred HHHHHHHHHHHHcCCchhHhHHHHHHHH
Q 004943 612 WALSVLTALYQQLGDRGNEMENDEYRRK 639 (722)
Q Consensus 612 ~al~~L~~l~~~~Gd~~~A~e~~~~~~~ 639 (722)
.+...|+.++...|+.++|...|+....
T Consensus 145 ~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 145 EVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 4677889999999999999998886543
No 119
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.42 E-value=2.7e-06 Score=80.66 Aligned_cols=101 Identities=9% Similarity=-0.113 Sum_probs=83.4
Q ss_pred HHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHH
Q 004943 346 VDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFV 425 (722)
Q Consensus 346 vylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~ 425 (722)
+++--+..+...|++++|.+++++++.. ++.. ...+.++|.++...|+|+
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~---------~P~~---------------------~~~~~~lg~~~~~~g~~~ 87 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIY---------DFYN---------------------VDYIMGLAAIYQIKEQFQ 87 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTC---------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCC---------------------HHHHHHHHHHHHHHccHH
Confidence 3444577778899999999999999988 2222 233467899999999999
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchh
Q 004943 426 EAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS 484 (722)
Q Consensus 426 eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~ 484 (722)
+|++.|++++++.-..| .+++++|.++..+|++++|+..|+.++.+..+..
T Consensus 88 ~Ai~~~~~al~l~P~~~--------~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 88 QAADLYAVAFALGKNDY--------TPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHHHHSSSCC--------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHhhCCCCc--------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999753333 4589999999999999999999999999887765
No 120
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.40 E-value=7.5e-06 Score=78.71 Aligned_cols=117 Identities=13% Similarity=0.059 Sum_probs=90.6
Q ss_pred HHHHHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCc----hhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcc
Q 004943 407 LMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPT----ILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES 482 (722)
Q Consensus 407 ~a~lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d----~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~ 482 (722)
.+-.+.++|......|+|++|++.|.+++++....|+ ......+.+++++|.++..+|+|++|+..|..|+.+
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l--- 86 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY--- 86 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---
Confidence 4455678899999999999999999999999887654 111223558999999999999999999999888764
Q ss_pred hhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 004943 483 KSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLH----FAYGLLLMRQQDFQEARNRLAKGLQ 558 (722)
Q Consensus 483 ~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al----~~lG~~~~~~G~~~eAk~~L~qAL~ 558 (722)
.| +.| ++ .+ ..+.++ ++.|.++...|++++|...|++||+
T Consensus 87 --------~n------~~~-------------e~--~p-------d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 87 --------FN------RRG-------------EL--NQ-------DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp --------HH------HHC-------------CT--TS-------THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------hh------ccc-------------cC--CC-------chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 11 111 22 00 133455 9999999999999999999999999
Q ss_pred HHHH
Q 004943 559 IAHN 562 (722)
Q Consensus 559 la~~ 562 (722)
+.-+
T Consensus 131 l~p~ 134 (159)
T 2hr2_A 131 MIEE 134 (159)
T ss_dssp HHHH
T ss_pred cCCC
Confidence 9653
No 121
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.38 E-value=6.2e-06 Score=91.59 Aligned_cols=95 Identities=11% Similarity=-0.063 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHc--C
Q 004943 529 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGN-LQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKL--Y 605 (722)
Q Consensus 529 ~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd-~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki--~ 605 (722)
.+.++.++|.+|..+|++++|..+++++|++..+..|. +..++..+++||.+|..+|++++|++++++|+++.++. +
T Consensus 328 ~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~ 407 (429)
T 3qwp_A 328 QLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGR 407 (429)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Confidence 67899999999999999999999999999998877776 89999999999999999999999999999999999998 4
Q ss_pred ChhHHHHHHHHHHHHHHH
Q 004943 606 DIPTQIWALSVLTALYQQ 623 (722)
Q Consensus 606 D~~~q~~al~~L~~l~~~ 623 (722)
|.+.-..+...|+.+...
T Consensus 408 ~Hp~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 408 EHSLIEDLILLLEECDAN 425 (429)
T ss_dssp TSHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHH
Confidence 555556677777776654
No 122
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.37 E-value=3.7e-06 Score=93.56 Aligned_cols=76 Identities=14% Similarity=0.133 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHc
Q 004943 529 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGN-LQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKL 604 (722)
Q Consensus 529 ~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd-~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki 604 (722)
.+.+++++|.+|..+|++++|..+++++|++..+..|. +..++.++++||.+|..+|++++|++++++|+++.++.
T Consensus 339 ~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~ 415 (433)
T 3qww_A 339 MLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVA 415 (433)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999998888886 89999999999999999999999999999999999988
No 123
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.36 E-value=4.9e-06 Score=88.66 Aligned_cols=155 Identities=17% Similarity=0.128 Sum_probs=102.5
Q ss_pred CCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchh------------HHHHH
Q 004943 422 SGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS------------MQAMC 489 (722)
Q Consensus 422 g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~------------~~A~a 489 (722)
.++.+|++.+..+++.. ...+.+++.+|..+...|+|++|+..|++|+.+..+.. ..+.+
T Consensus 127 ~~~~~A~~~~~~a~~~~--------p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~ 198 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEK--------LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLAS 198 (336)
T ss_dssp EEEECCCCGGGCCHHHH--------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHH--------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHH
Confidence 44555555554444321 23467799999999999999999999999998765431 33567
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHH
Q 004943 490 HAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQL 569 (722)
Q Consensus 490 llnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l 569 (722)
+.|+|.+|...|+++.+...++.+..+.. . -+.+++.+|.++...|++++|...|++|+++. -.+
T Consensus 199 ~~nla~~~~~~g~~~~A~~~~~~al~~~p-----~----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~---P~~--- 263 (336)
T 1p5q_A 199 HLNLAMCHLKLQAFSAAIESCNKALELDS-----N----NEKGLSRRGEAHLAVNDFELARADFQKVLQLY---PNN--- 263 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----T----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SSC---
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----C----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC---CCC---
Confidence 77777777777777765555554444311 1 12467777777777788888888887777762 112
Q ss_pred HHHHHHHHHHHHHhCCChHHHH-HHHHHHHHH
Q 004943 570 VSQYLTILGNLALALHDTVQAR-EILRSSLTL 600 (722)
Q Consensus 570 ~a~~L~~LG~~~~a~g~~~qA~-~~l~~Al~l 600 (722)
..++..||.++...|+.++|. ++++..+..
T Consensus 264 -~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 264 -KAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 246667777777777777773 455555443
No 124
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.34 E-value=6.4e-06 Score=87.76 Aligned_cols=142 Identities=9% Similarity=0.070 Sum_probs=112.1
Q ss_pred HHHHHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCc-------hhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 004943 407 LMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPT-------ILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKI 479 (722)
Q Consensus 407 ~a~lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d-------~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l 479 (722)
.+..+.++|.++...|+|++|++.|.+++++....++ ......+.+++++|.++..+|+|++|+..|++++.+
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3455678899999999999999999999998766542 111223678999999999999999999999999987
Q ss_pred hcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 004943 480 TESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEA-RNRLAKGLQ 558 (722)
Q Consensus 480 ~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eA-k~~L~qAL~ 558 (722)
..+. ..++.++|.+|...|+++.+...++.+..+.. + -..++..+|.++...|++.+| +..+++.+.
T Consensus 226 ~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P--~-------~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 226 DSNN---EKGLSRRGEAHLAVNDFELARADFQKVLQLYP--N-------NKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--S-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC--C-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5442 45778999999999999987777776655411 1 125788899999999999998 667777776
Q ss_pred HH
Q 004943 559 IA 560 (722)
Q Consensus 559 la 560 (722)
..
T Consensus 294 ~~ 295 (336)
T 1p5q_A 294 RL 295 (336)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 125
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.32 E-value=4.4e-06 Score=92.79 Aligned_cols=118 Identities=12% Similarity=0.104 Sum_probs=96.3
Q ss_pred HHhCCHHHHHHHHHHHHHhhcch-----hHHHHHHHHHHHHHHhcCChhH----HHHHHHHhcchhcccccccChHHHHH
Q 004943 461 HSVGCYSEAAFHYVEAAKITESK-----SMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEAS 531 (722)
Q Consensus 461 ~alG~~~~Al~~f~~AL~l~~~~-----~~~A~allnla~v~l~~G~~e~----a~~aL~l~~~l~r~~~~~~~~~~~A~ 531 (722)
...|+|++|+..|++++.+.... ...+.+++|+|.+|..+|++++ +.++|+....++. ..++ ..|.
T Consensus 298 ~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg---~~Hp--~~a~ 372 (429)
T 3qwp_A 298 KAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFP---GSHP--VRGV 372 (429)
T ss_dssp HHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSC---SSCH--HHHH
T ss_pred HhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcC---CCCh--HHHH
Confidence 46789999999999999765432 3778899999999999999987 4555555444422 2232 3788
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHh
Q 004943 532 LHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGN-LQLVSQYLTILGNLALA 583 (722)
Q Consensus 532 al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd-~~l~a~~L~~LG~~~~a 583 (722)
.++++|.+|..+|++++|..+|++||++....+|. +..++.+++.|+.+...
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDAN 425 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998888886 78999999999987754
No 126
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.32 E-value=6.4e-06 Score=74.92 Aligned_cols=100 Identities=11% Similarity=-0.005 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCh
Q 004943 528 EEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDI 607 (722)
Q Consensus 528 ~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~ 607 (722)
+.|.++...|..++.+|++.+|..+|.+|+++. ...+.++..+|.++...|++++|.+.++.|+.+- ++
T Consensus 11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---p~- 79 (126)
T 4gco_A 11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-------PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD---SK- 79 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT-
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh---hh-
Confidence 367899999999999999999999999999882 1224688999999999999999999999999862 22
Q ss_pred hHHHHHHHHHHHHHHHcCCchhHhHHHHHHHHH
Q 004943 608 PTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 640 (722)
Q Consensus 608 ~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~ 640 (722)
-..++..+|.+|...|++++|.+.|+...+.
T Consensus 80 --~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 80 --FIKGYIRKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 2557889999999999999999999887764
No 127
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.31 E-value=6.5e-06 Score=74.86 Aligned_cols=99 Identities=17% Similarity=0.113 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHH
Q 004943 449 ESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVRE 528 (722)
Q Consensus 449 ~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~ 528 (722)
.+..+...|..+...|+|++|+..|++++.+..+. ..++.++|.+|...|+++.+...++.+..+ .+ .
T Consensus 12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p---~---- 79 (126)
T 4gco_A 12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN---AILYSNRAACLTKLMEFQRALDDCDTCIRL--DS---K---- 79 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT---T----
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHhhHHHhhccHHHHHHHHHHHHHh--hh---h----
Confidence 45678999999999999999999999999875433 567789999999999998866666655444 11 1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 004943 529 EASLHFAYGLLLMRQQDFQEARNRLAKGLQI 559 (722)
Q Consensus 529 ~A~al~~lG~~~~~~G~~~eAk~~L~qAL~l 559 (722)
-..+++.+|.++...|++++|...|+++|++
T Consensus 80 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 80 FIKGYIRKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 2357899999999999999999999999998
No 128
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.31 E-value=1.2e-05 Score=76.01 Aligned_cols=100 Identities=11% Similarity=-0.094 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHH
Q 004943 449 ESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVRE 528 (722)
Q Consensus 449 ~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~ 528 (722)
.+..++.+|..+...|+|++|+..|+.++.+..+. ..++.++|.+|...|+++++..+++.+..+ .++ +
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~---~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--~P~-~----- 103 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN---VDYIMGLAAIYQIKEQFQQAADLYAVAFAL--GKN-D----- 103 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSS-C-----
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CCC-C-----
Confidence 45679999999999999999999999998775432 457889999999999999877777766554 111 1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 004943 529 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 560 (722)
Q Consensus 529 ~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la 560 (722)
..+++.+|.++...|++++|...|++|+++.
T Consensus 104 -~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 104 -YTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp -CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 2478899999999999999999999999984
No 129
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.30 E-value=1.7e-05 Score=83.14 Aligned_cols=202 Identities=12% Similarity=-0.035 Sum_probs=136.1
Q ss_pred hccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhh-------HHHHHhhCCHHH
Q 004943 354 GRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENK-------VAVELTRSGFVE 426 (722)
Q Consensus 354 ~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~L-------g~~~l~~g~~~e 426 (722)
.+..++.+.|.++|.+++++ ++.- ---| .++ +.+....++..+
T Consensus 16 ~~~~~d~~~A~~~F~~a~~~---------dP~~--------~Daw-------------~g~~a~g~~~~~~L~~~~r~~~ 65 (282)
T 4f3v_A 16 SMLPMSEARSLDLFTEITNY---------DESA--------CDAW-------------IGRIRCGDTDRVTLFRAWYSRR 65 (282)
T ss_dssp HHTTTCHHHHHHHHHHHHHH---------CTTC--------HHHH-------------HHHHHTTCCCHHHHHHHHHTGG
T ss_pred cccCCCHHHHHHHHHHHHHh---------Chhh--------hHHH-------------HhHHHccCCcHHHHHHHHHHHH
Confidence 34679999999999999998 2111 1123 222 344444445566
Q ss_pred HHHHHHHHHHHHHhC-Cchhh------------hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 004943 427 AQEALVQMKNWFIRF-PTILQ------------ACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYA 493 (722)
Q Consensus 427 A~~~l~~Al~l~~~~-~d~~~------------~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnl 493 (722)
++..+.+++.+--.. .-.+. .....+....+..+...|+|++|.+.|...+. ..++.. +..++
T Consensus 66 a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~-~~~~~ 141 (282)
T 4f3v_A 66 NFGQLSGSVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHL-VAWMK 141 (282)
T ss_dssp GTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHH-HHHHH
T ss_pred HHHHHHHHhcCChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchH-HHHHH
Confidence 666666665532221 10100 01134455567788999999999999953332 223444 77888
Q ss_pred HHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHH
Q 004943 494 AVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQY 573 (722)
Q Consensus 494 a~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~ 573 (722)
|.+++..|+++.+...++..... . +......+++.+|.++...|++.+|..+|++++.. -.++.....+
T Consensus 142 a~l~~~~~r~~dA~~~l~~a~~~---~----d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g----~~~P~~~~da 210 (282)
T 4f3v_A 142 AVVYGAAERWTDVIDQVKSAGKW---P----DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDS----PAGEACARAI 210 (282)
T ss_dssp HHHHHHTTCHHHHHHHHTTGGGC---S----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----TTTTTTHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHhhcc---C----CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC----CCCccccHHH
Confidence 99999999998877777533221 1 11124568899999999999999999999998621 1113446678
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHH
Q 004943 574 LTILGNLALALHDTVQAREILRSSLTL 600 (722)
Q Consensus 574 L~~LG~~~~a~g~~~qA~~~l~~Al~l 600 (722)
...+|.++..+|+.++|+..++.++..
T Consensus 211 ~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 211 AWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 899999999999999999999998874
No 130
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.28 E-value=2.1e-05 Score=70.01 Aligned_cols=120 Identities=10% Similarity=-0.024 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHH
Q 004943 449 ESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVRE 528 (722)
Q Consensus 449 ~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~ 528 (722)
.+..++..|..+...|+|++|+..|.+++....+. ..++.++|.+|...|+++.+...++.+..+. + .
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p---~---- 70 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED---ARGYSNRAAALAKLMSFPEAIADCNKAIEKD--P---N---- 70 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T---T----
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--C---C----
Confidence 35678899999999999999999999999876443 4678899999999999988666666554441 1 1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 004943 529 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLA 581 (722)
Q Consensus 529 ~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~ 581 (722)
-..+++.+|.++...|++++|...+++++++.- ..++......+...|+.+.
T Consensus 71 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 71 FVRAYIRKATAQIAVKEYASALETLDAARTKDA-EVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHHTTTTHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCc-ccCCchhHHHHHHHHHHHH
Confidence 235789999999999999999999999999963 2344333445555565544
No 131
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.28 E-value=1.1e-05 Score=89.43 Aligned_cols=184 Identities=13% Similarity=-0.012 Sum_probs=134.8
Q ss_pred HhhHHHHHhhC---CHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHhhcchh
Q 004943 412 ENKVAVELTRS---GFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSV----GCYSEAAFHYVEAAKITESKS 484 (722)
Q Consensus 412 e~Lg~~~l~~g---~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~al----G~~~~Al~~f~~AL~l~~~~~ 484 (722)
.++|.++...| ++++|++.++++.+.. + ..+..++.+|.++..- +++++|..+|+.+. .
T Consensus 180 ~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g----~----~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa------~ 245 (452)
T 3e4b_A 180 VELATVYQKKQQPEQQAELLKQMEAGVSRG----T----VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA------P 245 (452)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTT----C----SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG------G
T ss_pred HHHHHHHHHcCCcccHHHHHHHHHHHHHCC----C----HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc------C
Confidence 46799999999 9999999999988732 2 2345568889888655 69999999998776 3
Q ss_pred HHHHHHHHHHHHHH---hcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcC-----CHHHHHHHHHHH
Q 004943 485 MQAMCHAYAAVSYF---CIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQ-----DFQEARNRLAKG 556 (722)
Q Consensus 485 ~~A~allnla~v~l---~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G-----~~~eAk~~L~qA 556 (722)
+-..+..++|.+|+ ..|+++.+...+...... + -+.+.+.+|.++. .| ++.+|..+|++|
T Consensus 246 g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-------g----~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~A 313 (452)
T 3e4b_A 246 GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-------D----QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKA 313 (452)
T ss_dssp GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-------T----CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-------C----CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHH
Confidence 44567788999843 455555554444443221 1 2357889999987 67 999999999998
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHh----CCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH----cCCch
Q 004943 557 LQIAHNHMGNLQLVSQYLTILGNLALA----LHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQ----LGDRG 628 (722)
Q Consensus 557 L~la~~~~gd~~l~a~~L~~LG~~~~a----~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~----~Gd~~ 628 (722)
. -|+ ..+...||.+|.. ..|+++|...++.|.. .+++ .+...|+.+|.. ..|+.
T Consensus 314 a------~g~----~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~----~g~~----~A~~~Lg~~y~~G~g~~~d~~ 375 (452)
T 3e4b_A 314 V------GRE----VAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR----NGQN----SADFAIAQLFSQGKGTKPDPL 375 (452)
T ss_dssp T------TTC----HHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT----TTCT----THHHHHHHHHHSCTTBCCCHH
T ss_pred h------CCC----HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh----hChH----HHHHHHHHHHHhCCCCCCCHH
Confidence 7 223 3578899999988 2399999999998865 4553 366788998874 34778
Q ss_pred hHhHHHHHHHH
Q 004943 629 NEMENDEYRRK 639 (722)
Q Consensus 629 ~A~e~~~~~~~ 639 (722)
+|..+|+.+..
T Consensus 376 ~A~~~~~~A~~ 386 (452)
T 3e4b_A 376 NAYVFSQLAKA 386 (452)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 88888777643
No 132
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.21 E-value=3.3e-06 Score=81.84 Aligned_cols=165 Identities=13% Similarity=0.044 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccC---
Q 004943 450 SMIEMLRGQYAHSVGCYSEAAFHYVEAAKIT-ESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTING--- 525 (722)
Q Consensus 450 a~i~~llG~~~~alG~~~~Al~~f~~AL~l~-~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~--- 525 (722)
+..+...|.....+|+++.|...|. .. .+....+..+.++|..+...|+++.+...+..+........+...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 79 (198)
T 2fbn_A 4 SHHHHHHSSGRENLYFQGAKKSIYD----YTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQIL 79 (198)
T ss_dssp ------------------CCCSGGG----CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHH
T ss_pred cccccchhhhhhhhhhccccCchhh----CCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhH
Confidence 4456667777777888888877773 22 223356667777888888888877655555544333221111000
Q ss_pred ----hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Q 004943 526 ----VREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLA 601 (722)
Q Consensus 526 ----~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lA 601 (722)
....+.+++.+|.++...|++++|..++.+++++.- ....++..+|.++...|++++|.+.++.++.+.
T Consensus 80 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 80 LDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK-------NNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-------ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 000247899999999999999999999999999821 124688999999999999999999999999873
Q ss_pred HHcCChhHHHHHHHHHHHHHHHcCCchhHh
Q 004943 602 KKLYDIPTQIWALSVLTALYQQLGDRGNEM 631 (722)
Q Consensus 602 kki~D~~~q~~al~~L~~l~~~~Gd~~~A~ 631 (722)
++. ..+...++.++...|+..++.
T Consensus 153 ---p~~---~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 153 ---PNN---LDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp ---TTC---HHHHHHHHHHHHHHHHHHC--
T ss_pred ---CCc---HHHHHHHHHHHHHHHHHHHHH
Confidence 222 446677888888777665554
No 133
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.19 E-value=3.3e-05 Score=68.73 Aligned_cols=119 Identities=13% Similarity=0.010 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 004943 487 AMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGN 566 (722)
Q Consensus 487 A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd 566 (722)
+..+.+.|..+...|+++.+...++.+.... + . -+.+++.+|.++...|++++|...+++++++.- .+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p---~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p---~~ 71 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--P---E----DARGYSNRAAALAKLMSFPEAIADCNKAIEKDP---NF 71 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T---T----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--C---C----ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC---Cc
Confidence 4455666777777777766555554443331 1 0 124667777777777777777777777776621 11
Q ss_pred hHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 004943 567 LQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALY 621 (722)
Q Consensus 567 ~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~ 621 (722)
..++..+|.++...|++++|.+.++.++.+..+.++.+....+...|..+.
T Consensus 72 ----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 72 ----VRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 346677777777777777777777777777655544444444445554443
No 134
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.19 E-value=1.5e-05 Score=74.63 Aligned_cols=106 Identities=15% Similarity=0.003 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC------------hHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 004943 528 EEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGN------------LQLVSQYLTILGNLALALHDTVQAREILR 595 (722)
Q Consensus 528 ~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd------------~~l~a~~L~~LG~~~~a~g~~~qA~~~l~ 595 (722)
..+..+...|..++..|++.+|..+|.+|+++... ..+ ....+.++.++|.++...|++++|...++
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~ 87 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDT-LILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSS 87 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-hcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 36789999999999999999999999999999542 221 35667899999999999999999999999
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHHH
Q 004943 596 SSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 640 (722)
Q Consensus 596 ~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~ 640 (722)
.|+.+- + .-..++..+|.+|...|++++|.+.|+.+.+.
T Consensus 88 ~al~~~-----p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 88 EVLKRE-----E-TNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHS-----T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcC-----C-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 999882 2 23678899999999999999999998887765
No 135
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.19 E-value=1.4e-05 Score=74.70 Aligned_cols=102 Identities=16% Similarity=0.084 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcc---------------hhHHHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 004943 449 ESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES---------------KSMQAMCHAYAAVSYFCIGDAESSSQAIDLI 513 (722)
Q Consensus 449 ~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~---------------~~~~A~allnla~v~l~~G~~e~a~~aL~l~ 513 (722)
.+..+...|..+...|+|++|+..|..++..... ......++.|+|.+|...|+++.+...++.+
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 5677899999999999999999999999987432 2345678899999999999998755555544
Q ss_pred cchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 004943 514 GPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQI 559 (722)
Q Consensus 514 ~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~l 559 (722)
..+ .+ . -+.+++.+|.++...|++++|...|++++++
T Consensus 90 l~~--~p---~----~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 90 LKR--EE---T----NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHH--ST---T----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred Hhc--CC---c----chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 443 11 1 2357899999999999999999999999999
No 136
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.18 E-value=2.9e-05 Score=67.83 Aligned_cols=105 Identities=13% Similarity=0.109 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHc-CCh
Q 004943 529 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKL-YDI 607 (722)
Q Consensus 529 ~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki-~D~ 607 (722)
.+.+++.+|..+...|++++|..++.++++... . ...++..+|.++...|++++|...++.++.+.... ++.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~---~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 75 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDP---T----NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDY 75 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---T----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC---c----cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhH
Confidence 567899999999999999999999999998731 1 24678899999999999999999999999998875 555
Q ss_pred hHHHHHHHHHHHHHHHcCCchhHhHHHHHHHHH
Q 004943 608 PTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 640 (722)
Q Consensus 608 ~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~ 640 (722)
.....+...++.+|...|++++|.++++...+.
T Consensus 76 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 76 RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 445778899999999999999999988877664
No 137
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.16 E-value=2.6e-05 Score=67.94 Aligned_cols=120 Identities=12% Similarity=-0.019 Sum_probs=92.4
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhC
Q 004943 343 YALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRS 422 (722)
Q Consensus 343 ~aLvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g 422 (722)
.+-+++.-+......|++++|.+++++++.. .+.. ...+.++|.++...|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---------~~~~---------------------~~~~~~~a~~~~~~~ 60 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL---------NPAN---------------------AVYFCNRAAAYSKLG 60 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTC---------------------HHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc---------CCCC---------------------HHHHHHHHHHHHHhh
Confidence 4456666777888899999999999999887 1111 122356799999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCC
Q 004943 423 GFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGD 502 (722)
Q Consensus 423 ~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~ 502 (722)
++++|++.+.++++. .|+. +.+++.+|.++...|++++|...|.+++....+. ..+..++|.++...|+
T Consensus 61 ~~~~A~~~~~~~~~~---~~~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 61 NYAGAVQDCERAICI---DPAY-----SKAYGRMGLALSSLNKHVEAVAYYKKALELDPDN---ETYKSNLKIAELKLRE 129 (131)
T ss_dssp CHHHHHHHHHHHHHH---CTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHhc---CccC-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccc---hHHHHHHHHHHHHHhc
Confidence 999999999999986 3332 3568899999999999999999999998875433 3456777888887776
Q ss_pred h
Q 004943 503 A 503 (722)
Q Consensus 503 ~ 503 (722)
+
T Consensus 130 ~ 130 (131)
T 2vyi_A 130 A 130 (131)
T ss_dssp C
T ss_pred C
Confidence 4
No 138
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.13 E-value=5e-05 Score=71.07 Aligned_cols=100 Identities=22% Similarity=0.246 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHH
Q 004943 449 ESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVRE 528 (722)
Q Consensus 449 ~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~ 528 (722)
.+..++.+|..+...|+|++|+..|++++....+. ..++.++|.+|...|+++.+...++.+..+.. .
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-----~---- 77 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN---PIYLSNRAAAYSASGQHEKAAEDAELATVVDP-----K---- 77 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----T----
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-----C----
Confidence 56789999999999999999999999999876543 56788999999999999886666665554411 1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 004943 529 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 560 (722)
Q Consensus 529 ~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la 560 (722)
-..+++.+|.++...|++++|..+|++++++.
T Consensus 78 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 78 YSKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 23678999999999999999999999999994
No 139
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.13 E-value=2.2e-05 Score=69.10 Aligned_cols=119 Identities=13% Similarity=0.002 Sum_probs=89.7
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhC
Q 004943 343 YALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRS 422 (722)
Q Consensus 343 ~aLvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g 422 (722)
.+-.++.-+..+...|++++|.++++++++. ++.. ..++.++|.++...|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---------~~~~---------------------~~~~~~la~~~~~~~ 64 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKR---------NPKD---------------------AKLYSNRAACYTKLL 64 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT---------CTTC---------------------HHHHHHHHHHHTTTT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---------CCCc---------------------HHHHHHHHHHHHHhc
Confidence 3444455577778899999999999999876 1111 223356899999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCC
Q 004943 423 GFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGD 502 (722)
Q Consensus 423 ~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~ 502 (722)
++++|++.+.+++++. |+ .+.+++.+|.++...|++++|...|++++....+. ..+..+++.++...|+
T Consensus 65 ~~~~A~~~~~~a~~~~---~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 65 EFQLALKDCEECIQLE---PT-----FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSC---KEAADGYQRCMMAQYN 133 (133)
T ss_dssp CHHHHHHHHHHHHHHC---TT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG---THHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHhC---CC-----chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHhcC
Confidence 9999999999999863 33 24568899999999999999999999998775433 2355667777766553
No 140
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.13 E-value=4.5e-05 Score=73.24 Aligned_cols=115 Identities=15% Similarity=0.148 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc------CChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Q 004943 528 EEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHM------GNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLA 601 (722)
Q Consensus 528 ~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~------gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lA 601 (722)
.+|..++..|..++..|++++|...|++||++.. .. ......+.+++++|.++..+|++++|...++.|+.++
T Consensus 9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p-~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~ 87 (159)
T 2hr2_A 9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISH-TMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF 87 (159)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT-TSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC-CCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 3678999999999999999999999999999954 21 1112345699999999999999999999999999985
Q ss_pred HHcCC---hhHHHH--HHHHHHHHHHHcCCchhHhHHHHHHHHHHHH
Q 004943 602 KKLYD---IPTQIW--ALSVLTALYQQLGDRGNEMENDEYRRKKLDE 643 (722)
Q Consensus 602 kki~D---~~~q~~--al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~ 643 (722)
.+.+. -...+| +...+|.++...|++++|.+.|+.+..+.-+
T Consensus 88 n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 88 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 55432 122333 3388999999999999999999988877533
No 141
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.12 E-value=2.9e-05 Score=72.67 Aligned_cols=99 Identities=13% Similarity=0.065 Sum_probs=82.5
Q ss_pred HHHHHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHH
Q 004943 407 LMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQ 486 (722)
Q Consensus 407 ~a~lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~ 486 (722)
.+..+..+|.++...|+|++|++.|.+++++. |+ .+.+++.+|.++..+|++++|+..|++++.+..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--- 78 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA---PA-----NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY--- 78 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---Cc-----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---
Confidence 34555778999999999999999999999874 33 24679999999999999999999999999876443
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhcch
Q 004943 487 AMCHAYAAVSYFCIGDAESSSQAIDLIGPV 516 (722)
Q Consensus 487 A~allnla~v~l~~G~~e~a~~aL~l~~~l 516 (722)
..++.++|.+|...|+++.+...++.+..+
T Consensus 79 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 79 SKAWSRLGLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 567789999999999998877777666554
No 142
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.10 E-value=2.2e-05 Score=75.94 Aligned_cols=155 Identities=12% Similarity=0.015 Sum_probs=104.9
Q ss_pred hhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchh--------
Q 004943 413 NKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS-------- 484 (722)
Q Consensus 413 ~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~-------- 484 (722)
+.+.+....|+|.+|.+.+....+- . ...+..+...|..+...|+|++|+..|.+++....+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 80 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEE------K--VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILL 80 (198)
T ss_dssp -------------CCCSGGGCCHHH------H--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHH
T ss_pred chhhhhhhhhhccccCchhhCCHHH------H--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHH
Confidence 3466666677777766665433221 1 23567788999999999999999999999998654322
Q ss_pred -----HHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 004943 485 -----MQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQI 559 (722)
Q Consensus 485 -----~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~l 559 (722)
....++.++|.+|...|+++.+...++.+..... . ...+++.+|.++...|++++|..+|++++++
T Consensus 81 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-----~----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 81 DKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK-----N----NVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-----T----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-----c----cHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 2347889999999999999886666665544411 1 2357899999999999999999999999988
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHhCCChHHHH
Q 004943 560 AHNHMGNLQLVSQYLTILGNLALALHDTVQAR 591 (722)
Q Consensus 560 a~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~ 591 (722)
.- .+ ..+...++.++...++..++.
T Consensus 152 ~p---~~----~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 152 NP---NN----LDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp ST---TC----HHHHHHHHHHHHHHHHHHC--
T ss_pred CC---Cc----HHHHHHHHHHHHHHHHHHHHH
Confidence 21 12 356778888888888777766
No 143
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.10 E-value=2.8e-05 Score=72.57 Aligned_cols=97 Identities=13% Similarity=0.067 Sum_probs=79.4
Q ss_pred HHHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHH
Q 004943 409 QFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAM 488 (722)
Q Consensus 409 ~lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~ 488 (722)
..+.++|.++...|+|++|++.+.+++.+ .|+. +.+++.+|.++..+|++++|+..|+.++.+..+. ..
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~ 90 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYD-----SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE---PR 90 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---TH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc---Cccc-----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---ch
Confidence 34467899999999999999999999875 3332 4568899999999999999999999999875443 34
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhcch
Q 004943 489 CHAYAAVSYFCIGDAESSSQAIDLIGPV 516 (722)
Q Consensus 489 allnla~v~l~~G~~e~a~~aL~l~~~l 516 (722)
++.++|.+|...|+++++...++.+..+
T Consensus 91 ~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 91 FPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5688999999999998877777666554
No 144
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.10 E-value=3.2e-05 Score=68.03 Aligned_cols=120 Identities=15% Similarity=0.070 Sum_probs=93.4
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChH
Q 004943 448 CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVR 527 (722)
Q Consensus 448 ~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~ 527 (722)
.....++.+|..+...|++++|...|+++++...+. ..++.++|.+|...|+++.+...++.+..... .
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-----~--- 82 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD---AKLYSNRAACYTKLLEFQLALKDCEECIQLEP-----T--- 82 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC---HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-----T---
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-----C---
Confidence 456789999999999999999999999998765432 56678899999999999886666665544311 1
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCC
Q 004943 528 EEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHD 586 (722)
Q Consensus 528 ~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~ 586 (722)
...+++.+|.++...|++++|..++.+++++.. . + ..+...+|.++...|+
T Consensus 83 -~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~--~----~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 83 -FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDS-S--C----KEAADGYQRCMMAQYN 133 (133)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG-G--G----THHHHHHHHHHHHHTC
T ss_pred -chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC-C--c----hHHHHHHHHHHHHhcC
Confidence 235788999999999999999999999998832 1 1 2466788888877663
No 145
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.09 E-value=9e-06 Score=76.83 Aligned_cols=122 Identities=18% Similarity=0.123 Sum_probs=92.9
Q ss_pred HhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH-H
Q 004943 419 LTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVS-Y 497 (722)
Q Consensus 419 l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v-~ 497 (722)
...|++++|++.+.++++. .|+. +.+++.+|.++...|++++|...|.+++....+. ..++.++|.+ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~---~p~~-----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~l~ 89 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA---NPQN-----SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN---AELYAALATVLY 89 (177)
T ss_dssp C-----CCCCHHHHHHHHH---CCSC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC---HHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHh---CCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHH
Confidence 4578999999999998875 3432 3568999999999999999999999999876543 4566788888 8
Q ss_pred HhcCCh--hHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 004943 498 FCIGDA--ESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 560 (722)
Q Consensus 498 l~~G~~--e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la 560 (722)
...|++ +.+...++.+.... + . ...+++.+|.++...|++++|..++++++++.
T Consensus 90 ~~~~~~~~~~A~~~~~~al~~~--p---~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 90 YQASQHMTAQTRAMIDKALALD--S---N----EITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHTTTCCCHHHHHHHHHHHHHC--T---T----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HhcCCcchHHHHHHHHHHHHhC--C---C----cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 888997 77666666554431 1 1 23578899999999999999999999999884
No 146
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.09 E-value=5.2e-05 Score=66.17 Aligned_cols=71 Identities=11% Similarity=0.187 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Q 004943 531 SLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLA 601 (722)
Q Consensus 531 ~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lA 601 (722)
.+++.+|.++...|++++|..++.+++++......+......++..+|.++...|++++|.+.++.++.+.
T Consensus 39 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 39 TYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 56788999999999999999999999999654334555557899999999999999999999999999853
No 147
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.07 E-value=1.3e-05 Score=83.02 Aligned_cols=100 Identities=18% Similarity=0.154 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHH
Q 004943 450 SMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREE 529 (722)
Q Consensus 450 a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~ 529 (722)
+..++.+|..+...|+|++|+..|.+++....+. ..++.|+|.+|...|+++++...++.+..+. + . -
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p---~----~ 71 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV---AVYYTNRALCYLKMQQPEQALADCRRALELD--G---Q----S 71 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--T---T----C
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--C---C----C
Confidence 4568899999999999999999999999875543 4677899999999999998777777665541 1 1 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 004943 530 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAH 561 (722)
Q Consensus 530 A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~ 561 (722)
..+++.+|.++...|++++|...|++++++.-
T Consensus 72 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 103 (281)
T 2c2l_A 72 VKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 103 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 35788999999999999999999999999964
No 148
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.07 E-value=0.0001 Score=65.13 Aligned_cols=102 Identities=13% Similarity=0.071 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHH
Q 004943 452 IEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEAS 531 (722)
Q Consensus 452 i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~ 531 (722)
.++..|..+...|++++|...|..++....+......++.++|.+|...|+++.+...++.+..... ++. . ...
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p--~~~--~--~~~ 77 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYP--THD--K--AAG 77 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TST--T--HHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCC--CCc--c--cHH
Confidence 3678899999999999999999999987766666667888999999999999887777766544421 111 1 356
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 004943 532 LHFAYGLLLMRQQDFQEARNRLAKGLQI 559 (722)
Q Consensus 532 al~~lG~~~~~~G~~~eAk~~L~qAL~l 559 (722)
+++.+|.++..+|++++|...|+++++.
T Consensus 78 ~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 78 GLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8899999999999999999999999987
No 149
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.07 E-value=2.4e-05 Score=73.02 Aligned_cols=99 Identities=9% Similarity=-0.068 Sum_probs=80.1
Q ss_pred HHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHH
Q 004943 346 VDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFV 425 (722)
Q Consensus 346 vylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~ 425 (722)
+++--+..+...|++++|.+++++++.. ++.. ...+.++|.++...|+|+
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~---------~p~~---------------------~~~~~~lg~~~~~~g~~~ 72 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVL---------DHYD---------------------SRFFLGLGACRQAMGQYD 72 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTC---------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc---------Cccc---------------------HHHHHHHHHHHHHHhhHH
Confidence 4455577888899999999999999887 2221 222356899999999999
Q ss_pred HHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcc
Q 004943 426 EAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES 482 (722)
Q Consensus 426 eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~ 482 (722)
+|++.+.+++.+. |+. +.+++.+|.++..+|++++|+..|+.++.+..+
T Consensus 73 ~A~~~~~~al~l~---p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 73 LAIHSYSYGAVMD---IXE-----PRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121 (148)
T ss_dssp HHHHHHHHHHHHS---TTC-----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcC---CCC-----chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 9999999999874 332 245889999999999999999999999987654
No 150
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.06 E-value=4.3e-05 Score=66.56 Aligned_cols=119 Identities=9% Similarity=0.025 Sum_probs=92.0
Q ss_pred HHHHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHH
Q 004943 408 MQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQA 487 (722)
Q Consensus 408 a~lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A 487 (722)
...+..+|.++...|++++|++.+.++++.. |+. +.+++.+|.++...|++++|...|..++....+. .
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~ 80 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN---PAN-----AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY---S 80 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---H
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC---CCC-----HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC---H
Confidence 3444668999999999999999999999863 332 4568899999999999999999999999875433 4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCH
Q 004943 488 MCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDF 546 (722)
Q Consensus 488 ~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~ 546 (722)
.++.++|.++...|+++.+...++.+..... + ...+++.+|.++...|++
T Consensus 81 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p--~-------~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 81 KAYGRMGLALSSLNKHVEAVAYYKKALELDP--D-------NETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--T-------CHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCc--c-------chHHHHHHHHHHHHHhcC
Confidence 5678899999999999887776665544411 1 124677888888877764
No 151
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.04 E-value=5.9e-05 Score=69.13 Aligned_cols=97 Identities=7% Similarity=-0.054 Sum_probs=77.5
Q ss_pred HHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHH
Q 004943 347 DLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVE 426 (722)
Q Consensus 347 ylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~e 426 (722)
++--+..+...|++++|.+++++++.. ++.. ...+.++|.++...|+|++
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~---------~p~~---------------------~~~~~~lg~~~~~~g~~~~ 70 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCML---------DHYD---------------------ARYFLGLGACRQSLGLYEQ 70 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTC---------------------HHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHh---------CCcc---------------------HHHHHHHHHHHHHHhhHHH
Confidence 344467778889999999999999887 2221 2223568999999999999
Q ss_pred HHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhc
Q 004943 427 AQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITE 481 (722)
Q Consensus 427 A~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~ 481 (722)
|++.+.+++++. |+. +.+++.+|.++..+|++++|+..|+.++.+..
T Consensus 71 A~~~~~~al~~~---p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 71 ALQSYSYGALMD---INE-----PRFPFHAAECHLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp HHHHHHHHHHHC---TTC-----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC---CCC-----cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 999999999974 332 24578999999999999999999999988754
No 152
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.04 E-value=4.5e-05 Score=69.92 Aligned_cols=96 Identities=15% Similarity=0.045 Sum_probs=78.5
Q ss_pred HHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHH
Q 004943 410 FLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMC 489 (722)
Q Consensus 410 lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~a 489 (722)
.+.++|.++...|+|++|++.+.+++.+ .|+. +..++.+|.++..+|++++|+..|+.++.+..+. ..+
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~ 88 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML---DHYD-----ARYFLGLGACRQSLGLYEQALQSYSYGALMDINE---PRF 88 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---THH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh---CCcc-----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---cHH
Confidence 3457899999999999999999999875 3432 3568899999999999999999999999875443 235
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcch
Q 004943 490 HAYAAVSYFCIGDAESSSQAIDLIGPV 516 (722)
Q Consensus 490 llnla~v~l~~G~~e~a~~aL~l~~~l 516 (722)
+.++|.+|...|+++.+...++.+..+
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 89 PFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 688999999999999877777666554
No 153
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.03 E-value=4.6e-05 Score=67.36 Aligned_cols=100 Identities=10% Similarity=0.082 Sum_probs=82.5
Q ss_pred HhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHH
Q 004943 412 ENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHA 491 (722)
Q Consensus 412 e~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~all 491 (722)
.++|.++...|+|++|++.+.++++.. |+. ...+.+++.+|.++...|++++|...|..++....+......++.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~---p~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 80 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY---PNG--VYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLL 80 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC---SSS--TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC---CCC--cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHH
Confidence 467999999999999999999988754 442 223467899999999999999999999999987766555567789
Q ss_pred HHHHHHHhcCChhHHHHHHHHhcch
Q 004943 492 YAAVSYFCIGDAESSSQAIDLIGPV 516 (722)
Q Consensus 492 nla~v~l~~G~~e~a~~aL~l~~~l 516 (722)
++|.+|...|+++.+...++.+...
T Consensus 81 ~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 81 KLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999998877777766554
No 154
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.03 E-value=1.3e-05 Score=83.03 Aligned_cols=96 Identities=9% Similarity=0.015 Sum_probs=77.6
Q ss_pred HHHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHH
Q 004943 409 QFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAM 488 (722)
Q Consensus 409 ~lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~ 488 (722)
..+.++|.++...|+|++|++.+.+++++ .|+. +.+++++|.++..+|++++|+..|++++.+..+. ..
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~ 73 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITR---NPLV-----AVYYTNRALCYLKMQQPEQALADCRRALELDGQS---VK 73 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC---HH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcc-----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HH
Confidence 34567899999999999999999999986 3442 4678999999999999999999999988764332 45
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhcc
Q 004943 489 CHAYAAVSYFCIGDAESSSQAIDLIGP 515 (722)
Q Consensus 489 allnla~v~l~~G~~e~a~~aL~l~~~ 515 (722)
++.++|.+|...|+++++...+..+..
T Consensus 74 ~~~~lg~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 74 AHFFLGQCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 678999999999999876555554433
No 155
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.02 E-value=0.00023 Score=79.82 Aligned_cols=170 Identities=11% Similarity=0.071 Sum_probs=122.6
Q ss_pred HhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHH
Q 004943 412 ENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHA 491 (722)
Q Consensus 412 e~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~all 491 (722)
.+++.++...|++++|.+.|++++++ .|+. ...++...|.+....|++++|...|..|+....... ....
T Consensus 325 ~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~---~~~~ 394 (530)
T 2ooe_A 325 FAYADYEESRMKYEKVHSIYNRLLAI---EDID----PTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRH---HVYV 394 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHS---SSSC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCT---HHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhCc---cccC----chHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCch---HHHH
Confidence 34577888899999999999999984 3332 125788889999999999999999999987644321 1112
Q ss_pred HHHHH-HHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHH
Q 004943 492 YAAVS-YFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLV 570 (722)
Q Consensus 492 nla~v-~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~ 570 (722)
..+.+ +...|+++.+...++.+...+. + ...++..+|......|++++|+..|++|+... -.++...
T Consensus 395 ~~a~~~~~~~~~~~~A~~~~e~al~~~p---~------~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~---~~~~~~~ 462 (530)
T 2ooe_A 395 TAALMEYYCSKDKSVAFKIFELGLKKYG---D------IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG---SLPPEKS 462 (530)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHT---T------CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC---CSCGGGC
T ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHCC---C------CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc---CCCHHHH
Confidence 22333 4467998887777776554421 1 23567888999999999999999999998762 1132222
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Q 004943 571 SQYLTILGNLALALHDTVQAREILRSSLTLAKK 603 (722)
Q Consensus 571 a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkk 603 (722)
..............|+.+++.+....++...-+
T Consensus 463 ~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 463 GEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 334555567777889999999999999888753
No 156
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.02 E-value=3.2e-05 Score=85.99 Aligned_cols=128 Identities=13% Similarity=0.128 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcch------------hHHHHHHHHHHHHHHhcCChhHHHHHHHHhcch
Q 004943 449 ESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK------------SMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPV 516 (722)
Q Consensus 449 ~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~------------~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l 516 (722)
.+..++..|..+...|+|++|+..|.+|+.+..+. ...+.++.|+|.+|+..|+++.+...++.+..+
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 46778999999999999999999999999876543 144788999999999999998866666655544
Q ss_pred hcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHH
Q 004943 517 YQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQARE 592 (722)
Q Consensus 517 ~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~ 592 (722)
. . . -+.+++.+|.++...|++++|...|++|+++.- .+ ..++..||.++...|+.++|.+
T Consensus 347 ~--p---~----~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P---~~----~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 347 D--S---A----NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP---QN----KAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp S--T---T----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----------CHHHHHHHHHHHHHHHHHHHH
T ss_pred C--C---c----cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---CC----HHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1 1 235789999999999999999999999998832 12 2478899999999998888774
No 157
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.00 E-value=7e-05 Score=83.28 Aligned_cols=134 Identities=9% Similarity=0.051 Sum_probs=105.1
Q ss_pred HHHHHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCc-------hhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 004943 407 LMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPT-------ILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKI 479 (722)
Q Consensus 407 ~a~lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d-------~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l 479 (722)
.+..+.++|.++..+|+|++|++.|.+++++....++ ........+++++|.++..+|+|++|+..|.+++.+
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 3555678999999999999999999999998776642 111233678999999999999999999999999987
Q ss_pred hcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 004943 480 TESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNR 552 (722)
Q Consensus 480 ~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~ 552 (722)
..+. ..++.++|.+|...|+++.+...+..+..+.. + -..++..+|.++...|++.+|...
T Consensus 347 ~p~~---~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P--~-------~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 347 DSAN---EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP--Q-------NKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp STTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-------------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcc---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--C-------CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5443 56789999999999999988777777665511 1 224678888888888888876543
No 158
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.00 E-value=7.3e-05 Score=66.80 Aligned_cols=101 Identities=18% Similarity=0.154 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHH
Q 004943 449 ESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVRE 528 (722)
Q Consensus 449 ~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~ 528 (722)
.+..++.+|..+...|++++|+..|..++....+. ..++.++|.++...|+++.+...++.+..+.. .
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-----~---- 75 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV---AVYYTNRALCYLKMQQPEQALADCRRALELDG-----Q---- 75 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----T----
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-----h----
Confidence 35778999999999999999999999999876543 45788999999999999886666665544411 1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 004943 529 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAH 561 (722)
Q Consensus 529 ~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~ 561 (722)
-..+++.+|.++...|++.+|..++++++++..
T Consensus 76 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 76 SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHCh
Confidence 235789999999999999999999999999965
No 159
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.99 E-value=0.00036 Score=86.37 Aligned_cols=180 Identities=13% Similarity=0.005 Sum_probs=115.7
Q ss_pred HHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHH
Q 004943 411 LENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCH 490 (722)
Q Consensus 411 Le~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~al 490 (722)
..++|.++...|++.+|++.|.+| .|. ..+...|.++...|+|++|.+.|..|.+..++....
T Consensus 1108 WsqLAKAql~~G~~kEAIdsYiKA-------dD~------say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Id---- 1170 (1630)
T 1xi4_A 1108 WSQLAKAQLQKGMVKEAIDSYIKA-------DDP------SSYMEVVQAANTSGNWEELVKYLQMARKKARESYVE---- 1170 (1630)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhc-------CCh------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhccccccc----
Confidence 357899999999999999999776 222 336679999999999999999998887765443211
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHH
Q 004943 491 AYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLV 570 (722)
Q Consensus 491 lnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~ 570 (722)
..+|..|...++.+++...+. . .. - ..+..+|..+...|+|.+|+.+|.+|
T Consensus 1171 t~LafaYAKl~rleele~fI~---~--------~n---~-ad~~~iGd~le~eg~YeeA~~~Y~kA-------------- 1221 (1630)
T 1xi4_A 1171 TELIFALAKTNRLAELEEFIN---G--------PN---N-AHIQQVGDRCYDEKMYDAAKLLYNNV-------------- 1221 (1630)
T ss_pred HHHHHHHHhhcCHHHHHHHHh---C--------CC---H-HHHHHHHHHHHhcCCHHHHHHHHHhh--------------
Confidence 136777777777665433321 1 00 1 24556888888888888888888775
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHH------------------HHcCC-hhHHHHHHHHHHHHHHHcCCchhHh
Q 004943 571 SQYLTILGNLALALHDTVQAREILRSSLTLA------------------KKLYD-IPTQIWALSVLTALYQQLGDRGNEM 631 (722)
Q Consensus 571 a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lA------------------kki~D-~~~q~~al~~L~~l~~~~Gd~~~A~ 631 (722)
.....||.++...|++++|.+.++.|.... +..+. ...-..-+..+...|...|..++|.
T Consensus 1222 -~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI 1300 (1630)
T 1xi4_A 1222 -SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELI 1300 (1630)
T ss_pred -hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHH
Confidence 134456667777777777777766663221 11110 0000112335566777778777777
Q ss_pred HHHHHH
Q 004943 632 ENDEYR 637 (722)
Q Consensus 632 e~~~~~ 637 (722)
..++..
T Consensus 1301 ~LlE~a 1306 (1630)
T 1xi4_A 1301 TMLEAA 1306 (1630)
T ss_pred HHHHHH
Confidence 766655
No 160
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.97 E-value=6.8e-05 Score=67.38 Aligned_cols=102 Identities=14% Similarity=0.095 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHH
Q 004943 449 ESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVRE 528 (722)
Q Consensus 449 ~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~ 528 (722)
.+..++..|..+...|++++|...|++++....+......++.++|.+|...|+++.+...++.+..... .
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----~---- 97 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-----G---- 97 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-----C----
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-----c----
Confidence 4677899999999999999999999999987766555678889999999999999887666665544411 1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 004943 529 EASLHFAYGLLLMRQQDFQEARNRLAKGLQI 559 (722)
Q Consensus 529 ~A~al~~lG~~~~~~G~~~eAk~~L~qAL~l 559 (722)
...+++.+|.++...|++++|..++++++++
T Consensus 98 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 98 DVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 1357889999999999999999999999988
No 161
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.97 E-value=9.3e-06 Score=69.82 Aligned_cols=99 Identities=12% Similarity=0.016 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChh
Q 004943 529 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIP 608 (722)
Q Consensus 529 ~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~ 608 (722)
.+.+++.+|.++...|++++|...+++++++.- .+ ..++..+|.++...|++++|.+.++.++.+....++..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p---~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 75 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQP---QN----PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVA 75 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT---TC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHH
Confidence 456889999999999999999999999998822 12 46789999999999999999999999999877666666
Q ss_pred HHHHHHHHHHHHHHHcCCchhHhHHH
Q 004943 609 TQIWALSVLTALYQQLGDRGNEMEND 634 (722)
Q Consensus 609 ~q~~al~~L~~l~~~~Gd~~~A~e~~ 634 (722)
....++..++.++...|+.+.|.+.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 76 IRSKLQYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHHHHHHhHhhhHhHH
Confidence 66778889999999999888776543
No 162
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.95 E-value=0.00012 Score=63.14 Aligned_cols=115 Identities=17% Similarity=0.063 Sum_probs=86.4
Q ss_pred HHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHH
Q 004943 410 FLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMC 489 (722)
Q Consensus 410 lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~a 489 (722)
.+..+|.++...|++++|.+.+.+++... |+. ..+++.+|.++...|++++|+..|++++....+. ..+
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~ 79 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD---PNN-----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---AEA 79 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC---cCc-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc---HHH
Confidence 34568999999999999999999998863 332 3568889999999999999999999998765432 346
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcC
Q 004943 490 HAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQ 544 (722)
Q Consensus 490 llnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G 544 (722)
+.++|.+|...|+++.+...++.+.... ++ ...++..+|.++..+|
T Consensus 80 ~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~-------~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 80 WYNLGNAYYKQGDYDEAIEYYQKALELD--PN-------NAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-------CHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC--CC-------cHHHHHHHHHHHHhcc
Confidence 6788999999999988776666554431 11 1245667777766544
No 163
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.95 E-value=7e-05 Score=81.15 Aligned_cols=128 Identities=10% Similarity=0.039 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcc-------------hhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcc
Q 004943 449 ESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES-------------KSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGP 515 (722)
Q Consensus 449 ~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~-------------~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~ 515 (722)
.+..++.+|..+...|+|++|+..|++|++.... ....+.++.|+|.+|...|+++++...++.+..
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 4566888999999999999999999999985433 236678899999999999999887666666555
Q ss_pred hhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHH
Q 004943 516 VYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQARE 592 (722)
Q Consensus 516 l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~ 592 (722)
+. . . .+.+++.+|.++...|++++|...|++|+++.- .+ ..+...|+.++...++.+++++
T Consensus 302 ~~--p---~----~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P---~~----~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 302 ID--P---S----NTKALYRRAQGWQGLKEYDQALADLKKAQEIAP---ED----KAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TC--T---T----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TC----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hC--c---h----hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---CC----HHHHHHHHHHHHHHHHHHHHHH
Confidence 41 1 1 346789999999999999999999999999832 22 3467788888888887777764
No 164
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.95 E-value=0.00012 Score=63.04 Aligned_cols=116 Identities=15% Similarity=0.019 Sum_probs=86.0
Q ss_pred HHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCH
Q 004943 345 LVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGF 424 (722)
Q Consensus 345 Lvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~ 424 (722)
-+++.-+..+...|++++|.++++++++. .+.. ...+.++|.++...|++
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---------~~~~---------------------~~~~~~la~~~~~~~~~ 59 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL---------DPNN---------------------AEAWYNLGNAYYKQGDY 59 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTC---------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------CcCc---------------------HHHHHHHHHHHHHhCCH
Confidence 34455566777899999999999999876 1111 11234679999999999
Q ss_pred HHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcC
Q 004943 425 VEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIG 501 (722)
Q Consensus 425 ~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G 501 (722)
++|...+.++++.. |+. ..+++.+|.++...|++++|...|.+++....+. ..+..++|.++...|
T Consensus 60 ~~A~~~~~~~~~~~---~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 60 DEAIEYYQKALELD---PNN-----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---AEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHHHHHHHHC---TTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC---Ccc-----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHhcc
Confidence 99999999998763 332 3567889999999999999999999998765433 234456666665543
No 165
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.94 E-value=4.9e-05 Score=67.94 Aligned_cols=101 Identities=11% Similarity=-0.071 Sum_probs=81.2
Q ss_pred HHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCC
Q 004943 344 ALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSG 423 (722)
Q Consensus 344 aLvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~ 423 (722)
+-.++.-+..+...|++++|.+++++++.. ++.. ..++.++|.++...|+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---------~~~~---------------------~~~~~~l~~~~~~~~~ 58 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITR---------NPLV---------------------AVYYTNRALCYLKMQQ 58 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTC---------------------HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---------CcCc---------------------HHHHHHHHHHHHHhcC
Confidence 445666678888899999999999999988 1111 2234568999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcc
Q 004943 424 FVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES 482 (722)
Q Consensus 424 ~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~ 482 (722)
|++|++.+.+++++. |+. +.+++.+|.++..+|++++|...|..++....+
T Consensus 59 ~~~A~~~~~~al~~~---p~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 59 PEQALADCRRALELD---GQS-----VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHHHHHHHHHC---TTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC---chh-----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 999999999999863 332 456899999999999999999999999876544
No 166
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.93 E-value=4.4e-05 Score=72.01 Aligned_cols=127 Identities=15% Similarity=0.099 Sum_probs=93.3
Q ss_pred HHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHH-
Q 004943 461 HSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLL- 539 (722)
Q Consensus 461 ~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~- 539 (722)
...|++++|+..|+.++....+. ..++.++|.+|...|+++.+...++.+..... + -..+++.+|.+
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~-------~~~~~~~la~~l 88 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQN---SEQWALLGEYYLWQNDYSNSLLAYRQALQLRG--E-------NAELYAALATVL 88 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC--S-------CHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--C-------CHHHHHHHHHHH
Confidence 35688999999999888765433 35678889999999999887766665554421 1 13567888988
Q ss_pred HHhcCCH--HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCC
Q 004943 540 LMRQQDF--QEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYD 606 (722)
Q Consensus 540 ~~~~G~~--~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D 606 (722)
+...|++ ++|...+.+++++. -.+ ..++..+|.++...|++++|...++.++.+.....+
T Consensus 89 ~~~~~~~~~~~A~~~~~~al~~~---p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 89 YYQASQHMTAQTRAMIDKALALD---SNE----ITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp HHHTTTCCCHHHHHHHHHHHHHC---TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred HHhcCCcchHHHHHHHHHHHHhC---CCc----HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 7789998 99999999999872 112 357889999999999999999999999887655444
No 167
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.90 E-value=0.0073 Score=75.04 Aligned_cols=158 Identities=14% Similarity=0.063 Sum_probs=101.5
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhc---------ccccc
Q 004943 453 EMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQ---------MKDTI 523 (722)
Q Consensus 453 ~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r---------~~~~~ 523 (722)
+..+|.++...|+|++|...|..| --+..+|.+|...|+++.+-++...+..... ..+++
T Consensus 1198 ~~~iGd~le~eg~YeeA~~~Y~kA-----------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef 1266 (1630)
T 1xi4_A 1198 IQQVGDRCYDEKMYDAAKLLYNNV-----------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEF 1266 (1630)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhh-----------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHH
Confidence 446999999999999999999664 2456778888888887765555444422200 00000
Q ss_pred -------cChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHH
Q 004943 524 -------NGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRS 596 (722)
Q Consensus 524 -------~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~ 596 (722)
..+..-+..+..++..|...|.+++|..++++||.+- +......+.||.++.. -.++.-+++++
T Consensus 1267 ~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-------raH~gmftELaiLyaK-y~peklmEhlk- 1337 (1630)
T 1xi4_A 1267 RLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-------RAHMGMFTELAILYSK-FKPQKMREHLE- 1337 (1630)
T ss_pred HHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-------hhHhHHHHHHHHHHHh-CCHHHHHHHHH-
Confidence 0000112355677788889999999999999999882 2233467778777765 34443333322
Q ss_pred HHHHHHHcCChh-----HHHHHHHHHHHHHHHcCCchhHhH
Q 004943 597 SLTLAKKLYDIP-----TQIWALSVLTALYQQLGDRGNEME 632 (722)
Q Consensus 597 Al~lAkki~D~~-----~q~~al~~L~~l~~~~Gd~~~A~e 632 (722)
.-.+++.-+. .+.+....+.-+|..-|++++|..
T Consensus 1338 --~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1338 --LFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred --HHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 2334444333 455666677889999999999973
No 168
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.90 E-value=0.0001 Score=79.84 Aligned_cols=134 Identities=9% Similarity=0.038 Sum_probs=102.2
Q ss_pred HHHHHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCc--------hhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004943 407 LMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPT--------ILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAK 478 (722)
Q Consensus 407 ~a~lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d--------~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~ 478 (722)
.+..+.++|.++...|+|++|++.|+++++++...+. ......+.+++++|.++..+|+|++|+.+|++++.
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 3445677899999999999999999999998766420 02234568899999999999999999999999998
Q ss_pred hhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 004943 479 ITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNR 552 (722)
Q Consensus 479 l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~ 552 (722)
+..+ .+.++.++|.+|...|+++++...++.+..+.. + -..++..++.++...+++.++...
T Consensus 302 ~~p~---~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P--~-------~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 302 IDPS---NTKALYRRAQGWQGLKEYDQALADLKKAQEIAP--E-------DKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp TCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--T-------CHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hCch---hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--C-------CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6543 356778999999999999887777766655411 1 124566777777777777776543
No 169
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.87 E-value=5.8e-05 Score=64.07 Aligned_cols=96 Identities=15% Similarity=0.078 Sum_probs=79.4
Q ss_pred HhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHH
Q 004943 412 ENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHA 491 (722)
Q Consensus 412 e~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~all 491 (722)
.++|.++...|++++|++.+.+++++. |+. ..+++.+|.++...|++++|+..|++++....+ .....++.
T Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~ 80 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQLD---PEE-----SKYWLMKGKALYNLERYEEAVDCYNYVINVIED-EYNKDVWA 80 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHHHC---CCC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC-TTCHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhC---cCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-cchHHHHH
Confidence 568999999999999999999999863 332 356889999999999999999999999987655 11345678
Q ss_pred HHHHHHHhc-CChhHHHHHHHHhcch
Q 004943 492 YAAVSYFCI-GDAESSSQAIDLIGPV 516 (722)
Q Consensus 492 nla~v~l~~-G~~e~a~~aL~l~~~l 516 (722)
++|.++... |+++.+.+.+..+...
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 999999999 9999888888766554
No 170
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.84 E-value=1.1e-05 Score=90.42 Aligned_cols=177 Identities=14% Similarity=0.102 Sum_probs=120.2
Q ss_pred HHHHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHH
Q 004943 408 MQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQA 487 (722)
Q Consensus 408 a~lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A 487 (722)
+..+.++|.++..+|+|++|++.+++++++ .|+. +.+++++|.++..+|++++|+..|++|+++..+ .+
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~---~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~---~~ 74 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIEL---NPSN-----AIYYGNRSLAYLRTECYGYALGDATRAIELDKK---YI 74 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHH---CTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT---CH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CCcc-----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---CH
Confidence 334567888999999999999999999997 3442 567999999999999999999999999987443 25
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHH--HHhcCCHHHHHHHHH-----------
Q 004943 488 MCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLL--LMRQQDFQEARNRLA----------- 554 (722)
Q Consensus 488 ~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~--~~~~G~~~eAk~~L~----------- 554 (722)
.++.++|.+|...|+++++...++.+..+. ++ .. . ++..+|.+ +..+|++++|...++
T Consensus 75 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--p~-~~----~--~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 145 (477)
T 1wao_1 75 KGYYRRAASNMALGKFRAALRDYETVVKVK--PH-DK----D--AKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDI 145 (477)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TT-CT----T--HHHHHHHHHHHHHHHHHCCC------CCSTTTCCTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CH----H--HHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhh
Confidence 577899999999999988777766655441 11 11 2 34445555 788999999999999
Q ss_pred HHHHHHHHhcCChH----HHHHHHHHHHHHHHhCCC--hHHHHHHHHHHHHHHHHc
Q 004943 555 KGLQIAHNHMGNLQ----LVSQYLTILGNLALALHD--TVQAREILRSSLTLAKKL 604 (722)
Q Consensus 555 qAL~la~~~~gd~~----l~a~~L~~LG~~~~a~g~--~~qA~~~l~~Al~lAkki 604 (722)
+++++...-.|... .+...+..+-..+...+. .+++...+..+..+.++-
T Consensus 146 ~al~~~~~~~~~~~~~~~itl~~l~~lie~l~~~~~l~e~~v~~L~~~a~eil~~e 201 (477)
T 1wao_1 146 ESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKL 201 (477)
T ss_dssp SSCCCCTTCCSCCCGGGSCCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHTS
T ss_pred hhccccccccccccccccccHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHccC
Confidence 66666332122211 223344445455555554 344556888888877653
No 171
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.82 E-value=0.00017 Score=64.75 Aligned_cols=102 Identities=14% Similarity=0.011 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChh
Q 004943 529 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIP 608 (722)
Q Consensus 529 ~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~ 608 (722)
.+..++.+|..+...|++.+|..++++++++. .+......++..+|.++...|++++|.+.++.++.+. ++.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~- 98 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD----ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD---GGD- 98 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT---SCC-
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc----ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC---ccC-
Confidence 46789999999999999999999999998762 2334557899999999999999999999999999862 222
Q ss_pred HHHHHHHHHHHHHHHcCCchhHhHHHHHHHHH
Q 004943 609 TQIWALSVLTALYQQLGDRGNEMENDEYRRKK 640 (722)
Q Consensus 609 ~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~ 640 (722)
..+...++.+|...|++++|...++...+.
T Consensus 99 --~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 99 --VKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 557788999999999999999988877654
No 172
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.82 E-value=5.6e-05 Score=67.95 Aligned_cols=93 Identities=8% Similarity=-0.188 Sum_probs=74.5
Q ss_pred HHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHHH
Q 004943 350 VVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQE 429 (722)
Q Consensus 350 s~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~ 429 (722)
-+..+...|++++|.+.++++++. ++.. ...+.++|.++...|++++|++
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~---------~P~~---------------------~~a~~~lg~~~~~~g~~~~A~~ 72 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQK---------EPER---------------------EEAWRSLGLTQAENEKDGLAII 72 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---------STTC---------------------HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH---------CCCC---------------------HHHHHHHHHHHHHcCCHHHHHH
Confidence 356677889999999999999988 2221 2233568999999999999999
Q ss_pred HHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh
Q 004943 430 ALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKIT 480 (722)
Q Consensus 430 ~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~ 480 (722)
.+++++++ .|+. +.+++.+|.++...|++++|+..|+++++..
T Consensus 73 ~~~~al~l---~P~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 73 ALNHARML---DPKD-----IAVHAALAVSHTNEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHH---CTTC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHh---CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999986 3442 3468899999999999999999999888653
No 173
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.79 E-value=0.0003 Score=59.95 Aligned_cols=97 Identities=11% Similarity=-0.007 Sum_probs=78.9
Q ss_pred HHHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHH
Q 004943 409 QFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAM 488 (722)
Q Consensus 409 ~lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~ 488 (722)
..+..+|.++...|++++|.+.+.++++.. |+. +.+++.+|.++...|++++|...|.+++....+. ..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~ 73 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD---PHN-----HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW---GK 73 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTC-----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC---CCc-----HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc---HH
Confidence 345678999999999999999999999863 332 4568899999999999999999999998875432 45
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhcch
Q 004943 489 CHAYAAVSYFCIGDAESSSQAIDLIGPV 516 (722)
Q Consensus 489 allnla~v~l~~G~~e~a~~aL~l~~~l 516 (722)
++.++|.++...|+++.+...++.+...
T Consensus 74 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 74 GYSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 6788899999999998877777665544
No 174
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.78 E-value=8.1e-05 Score=66.91 Aligned_cols=93 Identities=15% Similarity=-0.059 Sum_probs=76.4
Q ss_pred HhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHH
Q 004943 412 ENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHA 491 (722)
Q Consensus 412 e~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~all 491 (722)
..+|.++...|++++|++.+++++++ .|+. +.+++.+|.++..+|++++|+..|++++.+..+. ..++.
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~-----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~---~~~~~ 89 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQK---EPER-----EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD---IAVHA 89 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH---STTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH---CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHH
Confidence 34689999999999999999999985 3442 4568999999999999999999999999876543 33668
Q ss_pred HHHHHHHhcCChhHHHHHHHHhcc
Q 004943 492 YAAVSYFCIGDAESSSQAIDLIGP 515 (722)
Q Consensus 492 nla~v~l~~G~~e~a~~aL~l~~~ 515 (722)
++|.+|...|+++++...++.+..
T Consensus 90 ~la~~~~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 90 ALAVSHTNEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 899999999998887777765543
No 175
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.77 E-value=0.00016 Score=61.76 Aligned_cols=98 Identities=13% Similarity=-0.037 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChh
Q 004943 529 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIP 608 (722)
Q Consensus 529 ~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~ 608 (722)
.+.+++.+|..+...|++++|..+++++++... .+ ..++..+|.++...|++++|.+.++.++.+. ++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~-- 70 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDP---HN----HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK---PD-- 70 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TT--
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC---Cc----HHHHHHHHHHHHhhccHHHHHHHHHHHHHhC---cc--
Confidence 567899999999999999999999999998721 12 4578899999999999999999999999863 22
Q ss_pred HHHHHHHHHHHHHHHcCCchhHhHHHHHHHH
Q 004943 609 TQIWALSVLTALYQQLGDRGNEMENDEYRRK 639 (722)
Q Consensus 609 ~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~ 639 (722)
...+...++.++...|++++|.+.++...+
T Consensus 71 -~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 71 -WGKGYSRKAAALEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred -cHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 245778899999999999999998876654
No 176
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.77 E-value=2.8e-05 Score=68.85 Aligned_cols=93 Identities=13% Similarity=0.102 Sum_probs=69.7
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHHHHHHHHH
Q 004943 356 PKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMK 435 (722)
Q Consensus 356 ~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~~l~~Al 435 (722)
..|++++|+++++++++. - ..+ +. ...++.++|.++...|+|++|++.+++++
T Consensus 2 ~~g~~~~A~~~~~~al~~----~--~~~-p~--------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al 54 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS----G--LQG-KD--------------------LAECYLGLGSTFRTLGEYRKAEAVLANGV 54 (117)
T ss_dssp -----CCCHHHHHHHHSS----C--CCH-HH--------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHc----C--CCC-cc--------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 357889999999998875 0 001 11 33445678999999999999999999999
Q ss_pred HHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcch
Q 004943 436 NWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK 483 (722)
Q Consensus 436 ~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~ 483 (722)
++. |+. +.+++.+|.++..+|++++|+..|++++....+.
T Consensus 55 ~~~---p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 94 (117)
T 3k9i_A 55 KQF---PNH-----QALRVFYAMVLYNLGRYEQGVELLLKIIAETSDD 94 (117)
T ss_dssp HHC---TTC-----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC
T ss_pred HhC---CCc-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 873 442 4568899999999999999999999999775443
No 177
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.76 E-value=4.4e-05 Score=81.43 Aligned_cols=136 Identities=13% Similarity=0.103 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhH--------------HHHHHHHHHHHHHhcCChhHHHHHHHHhc
Q 004943 449 ESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSM--------------QAMCHAYAAVSYFCIGDAESSSQAIDLIG 514 (722)
Q Consensus 449 ~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~--------------~A~allnla~v~l~~G~~e~a~~aL~l~~ 514 (722)
.+..++..|..+...|+|++|+..|.+|+....+... ...+++|+|.+|+..|+++.+...++.+.
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566889999999999999999999999987544220 11255666666666666655444444333
Q ss_pred chhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH-HHhCCChHHHHHH
Q 004943 515 PVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNL-ALALHDTVQAREI 593 (722)
Q Consensus 515 ~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~-~~a~g~~~qA~~~ 593 (722)
.+.. . -+.+++.+|.++...|++++|...|++++++.-. + ..+...|+.+ ....+..+++..+
T Consensus 258 ~~~p-----~----~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~---~----~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 258 TEEE-----K----NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD---D----KAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp HHCT-----T----CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------
T ss_pred HhCC-----C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---C----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3210 0 1235566666666666666666666666655211 1 1234444444 2233344445555
Q ss_pred HHHHHHH
Q 004943 594 LRSSLTL 600 (722)
Q Consensus 594 l~~Al~l 600 (722)
++.++..
T Consensus 322 ~~~~l~~ 328 (338)
T 2if4_A 322 YKGIFKG 328 (338)
T ss_dssp -------
T ss_pred HHHhhCC
Confidence 5554443
No 178
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.75 E-value=0.0002 Score=61.89 Aligned_cols=85 Identities=14% Similarity=0.064 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhH
Q 004943 530 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPT 609 (722)
Q Consensus 530 A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~ 609 (722)
+.+++.+|.++...|++++|..+|++++++.- .+ ..++..||.++...|++++|.+.++.|+.++.+.+|..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~- 78 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDP---DY----VGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQK- 78 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---TC----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---Cc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchh-
Confidence 35789999999999999999999999999832 12 24788999999999999999999999999999999954
Q ss_pred HHHHHHHHHHHHHHcC
Q 004943 610 QIWALSVLTALYQQLG 625 (722)
Q Consensus 610 q~~al~~L~~l~~~~G 625 (722)
....+..++...|
T Consensus 79 ---~~~~l~~~l~~~~ 91 (100)
T 3ma5_A 79 ---DLSELQDAKLKAE 91 (100)
T ss_dssp ---HHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHcc
Confidence 3444444444444
No 179
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.75 E-value=4.6e-05 Score=81.27 Aligned_cols=142 Identities=8% Similarity=-0.052 Sum_probs=83.8
Q ss_pred HHHHHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCc---------hhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 004943 407 LMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPT---------ILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAA 477 (722)
Q Consensus 407 ~a~lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d---------~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL 477 (722)
.+..+.++|.++...|+|++|+..|.+++.+....+. ........+++++|.++..+|+|++|+.+|+.++
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455678899999999999999999999987533221 0001112478999999999999999999999999
Q ss_pred HhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHH-HHhcCCHHHHHHHHHHH
Q 004943 478 KITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLL-LMRQQDFQEARNRLAKG 556 (722)
Q Consensus 478 ~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~-~~~~G~~~eAk~~L~qA 556 (722)
.+..+. ..++.++|.+|...|+++.+...+..+..+... -..++..++.+ ....+...+++..|.++
T Consensus 258 ~~~p~~---~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~---------~~~a~~~L~~l~~~~~~~~~~a~~~~~~~ 325 (338)
T 2if4_A 258 TEEEKN---PKALFRRGKAKAELGQMDSARDDFRKAQKYAPD---------DKAIRRELRALAEQEKALYQKQKEMYKGI 325 (338)
T ss_dssp HHCTTC---HHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------------
T ss_pred HhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 875432 467789999999999999988888877665211 12345556665 34567788899999999
Q ss_pred HHHH
Q 004943 557 LQIA 560 (722)
Q Consensus 557 L~la 560 (722)
+...
T Consensus 326 l~~~ 329 (338)
T 2if4_A 326 FKGK 329 (338)
T ss_dssp ----
T ss_pred hCCC
Confidence 8874
No 180
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.74 E-value=0.0001 Score=63.16 Aligned_cols=90 Identities=10% Similarity=0.055 Sum_probs=73.2
Q ss_pred HHHHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcch---h
Q 004943 408 MQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK---S 484 (722)
Q Consensus 408 a~lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~---~ 484 (722)
+..+.++|.++...|+|++|++.+.+++++ .|+. +.+++++|.++..+|++++|+..|++++.+..+. .
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 75 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA---QPQN-----PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVA 75 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---CTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCC-----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHH
Confidence 344567899999999999999999999987 3332 4668999999999999999999999999876554 2
Q ss_pred HHHHHHHHHHHHHHhcCChhH
Q 004943 485 MQAMCHAYAAVSYFCIGDAES 505 (722)
Q Consensus 485 ~~A~allnla~v~l~~G~~e~ 505 (722)
....++.++|.++...|+.+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~ 96 (111)
T 2l6j_A 76 IRSKLQYRLELAQGAVGSVQI 96 (111)
T ss_dssp HHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHhHhh
Confidence 446677888888888776543
No 181
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.74 E-value=6.2e-05 Score=66.54 Aligned_cols=89 Identities=13% Similarity=0.145 Sum_probs=68.6
Q ss_pred HhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHH
Q 004943 462 SVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLM 541 (722)
Q Consensus 462 alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~ 541 (722)
.+|++++|+.+|++++....+.+....++.++|.+|...|+++++...++.+.... ++ -..+++.+|.++.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~-------~~~~~~~l~~~~~ 72 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--PN-------HQALRVFYAMVLY 72 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-------CHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-------chHHHHHHHHHHH
Confidence 47899999999999998643345667888999999999999988777776655441 11 1357889999999
Q ss_pred hcCCHHHHHHHHHHHHHH
Q 004943 542 RQQDFQEARNRLAKGLQI 559 (722)
Q Consensus 542 ~~G~~~eAk~~L~qAL~l 559 (722)
..|++++|...++++++.
T Consensus 73 ~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 73 NLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HHTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999999988
No 182
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.66 E-value=0.00011 Score=82.17 Aligned_cols=120 Identities=8% Similarity=-0.060 Sum_probs=90.2
Q ss_pred HHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHHHH
Q 004943 351 VILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEA 430 (722)
Q Consensus 351 ~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~~ 430 (722)
+..+...|++++|.+++++|++. ++. ...++.++|.++...|+|++|++.
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~---------~p~---------------------~~~~~~~lg~~~~~~g~~~~A~~~ 62 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIEL---------NPS---------------------NAIYYGNRSLAYLRTECYGYALGD 62 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHH---------CTT---------------------CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh---------CCc---------------------cHHHHHHHHHHHHHhcCHHHHHHH
Confidence 55667789999999999999988 222 233446789999999999999999
Q ss_pred HHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH--HHhcCChhHHHH
Q 004943 431 LVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVS--YFCIGDAESSSQ 508 (722)
Q Consensus 431 l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v--~l~~G~~e~a~~ 508 (722)
+++++++ .|+. +.+++++|.++..+|++++|+..|++++++..+.. .+..+++.+ +...|+++++.+
T Consensus 63 ~~~al~l---~p~~-----~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~g~~~~A~~ 131 (477)
T 1wao_1 63 ATRAIEL---DKKY-----IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK---DAKMKYQECNKIVKQKAFERAIA 131 (477)
T ss_dssp HHHHHHS---CTTC-----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCT---THHHHHHHHHHHHHHHHHCCC--
T ss_pred HHHHHHh---CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999986 3432 46789999999999999999999999998754332 234455555 777777776555
Q ss_pred HHH
Q 004943 509 AID 511 (722)
Q Consensus 509 aL~ 511 (722)
.++
T Consensus 132 ~~~ 134 (477)
T 1wao_1 132 GDE 134 (477)
T ss_dssp ---
T ss_pred ccc
Confidence 555
No 183
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.65 E-value=0.00011 Score=62.24 Aligned_cols=98 Identities=12% Similarity=0.071 Sum_probs=76.7
Q ss_pred HHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHH
Q 004943 348 LMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEA 427 (722)
Q Consensus 348 lls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA 427 (722)
+.-+..+...|++++|.++++++++. ++.. ...+.++|.++...|++++|
T Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~a~~~---------~~~~---------------------~~~~~~~a~~~~~~~~~~~A 59 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQL---------DPEE---------------------SKYWLMKGKALYNLERYEEA 59 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHHH---------CCCC---------------------HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHh---------CcCC---------------------HHHHHHHHHHHHHccCHHHH
Confidence 44466777899999999999999887 1111 11235689999999999999
Q ss_pred HHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhhc
Q 004943 428 QEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSV-GCYSEAAFHYVEAAKITE 481 (722)
Q Consensus 428 ~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~al-G~~~~Al~~f~~AL~l~~ 481 (722)
++.+.+++++ .|+ .....+++.+|.++..+ |++++|+..|..++....
T Consensus 60 ~~~~~~a~~~---~~~---~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 60 VDCYNYVINV---IED---EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHHHHHHHT---SCC---TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHh---Ccc---cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 9999999976 343 11246789999999999 999999999988876543
No 184
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.63 E-value=4.2e-05 Score=84.94 Aligned_cols=219 Identities=14% Similarity=0.068 Sum_probs=85.7
Q ss_pred HHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHH
Q 004943 347 DLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVE 426 (722)
Q Consensus 347 ylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~e 426 (722)
|...+-.....|.|++|++|++.+.+. .+.... ...++.++...|+|.+
T Consensus 64 y~~V~~~ae~~g~~EeAi~yl~~ark~----~~~~~i---------------------------~~~Li~~Y~Klg~l~e 112 (449)
T 1b89_A 64 YMEVVQAANTSGNWEELVKYLQMARKK----ARESYV---------------------------ETELIFALAKTNRLAE 112 (449)
T ss_dssp ----------------------------------------------------------------------------CHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHh----Cccchh---------------------------HHHHHHHHHHhCCHHH
Confidence 333344566689999999999988765 111110 0124555556666666
Q ss_pred HHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHH
Q 004943 427 AQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESS 506 (722)
Q Consensus 427 A~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a 506 (722)
+.+.+.. |+. ..++.+|..+...|.|++|..+|.++ --+.++|.++.+.|+++++
T Consensus 113 ~e~f~~~--------pn~------~a~~~IGd~~~~~g~yeeA~~~Y~~a-----------~n~~~LA~~L~~Lg~yq~A 167 (449)
T 1b89_A 113 LEEFING--------PNN------AHIQQVGDRCYDEKMYDAAKLLYNNV-----------SNFGRLASTLVHLGEYQAA 167 (449)
T ss_dssp HTTTTTC--------C----------------------CTTTHHHHHHHT-----------TCHHHHHHHHHTTTCHHHH
T ss_pred HHHHHcC--------CcH------HHHHHHHHHHHHcCCHHHHHHHHHHh-----------hhHHHHHHHHHHhccHHHH
Confidence 6555421 221 14566666666666666666666433 1234445555555555543
Q ss_pred HHHHHHhcch---------hcccccc-------cChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHH
Q 004943 507 SQAIDLIGPV---------YQMKDTI-------NGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLV 570 (722)
Q Consensus 507 ~~aL~l~~~l---------~r~~~~~-------~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~ 570 (722)
-++...+... |...++. ..+..-+.-+..+...|...|++++|..+|+++|.+-+ ..
T Consensus 168 Vea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~-------ah 240 (449)
T 1b89_A 168 VDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLER-------AH 240 (449)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTT-------CC
T ss_pred HHHHHHcCCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcH-------HH
Confidence 3333332111 0000000 00000112233456778899999999999999998721 11
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChh-----HHHHHHHHHHHHHHHcCCchhHhH
Q 004943 571 SQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIP-----TQIWALSVLTALYQQLGDRGNEME 632 (722)
Q Consensus 571 a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~-----~q~~al~~L~~l~~~~Gd~~~A~e 632 (722)
....+.||-+|.. -+++.-+++++ .-++++.-++ .+.+....+.-+|..-|++++|..
T Consensus 241 ~~~ftel~il~~k-y~p~k~~ehl~---~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 241 MGMFTELAILYSK-FKPQKMREHLE---LFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHH---HHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHh-cCHHHHHHHHH---HHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 2477788776654 45665555544 2234455554 334444577788999999998865
No 185
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.52 E-value=0.0001 Score=81.89 Aligned_cols=177 Identities=14% Similarity=0.061 Sum_probs=58.8
Q ss_pred HhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHH
Q 004943 412 ENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHA 491 (722)
Q Consensus 412 e~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~all 491 (722)
..+|-+++..|++.+|++.|.++ +|. ..+..+|..+...|++++|...++.+.+..++ +....
T Consensus 36 s~La~A~l~~g~~~eAIdsfika-------~D~------~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~----~~i~~ 98 (449)
T 1b89_A 36 SQLAKAQLQKGMVKEAIDSYIKA-------DDP------SSYMEVVQAANTSGNWEELVKYLQMARKKARE----SYVET 98 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHcC-------CCH------HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc----chhHH
Confidence 35799999999999999999653 332 24677788889999999999988666653222 34445
Q ss_pred HHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHH
Q 004943 492 YAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVS 571 (722)
Q Consensus 492 nla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a 571 (722)
.++.+|-..|+.+++.+ +++.++ ..+++.+|..+...|.+++|+.+|.++
T Consensus 99 ~Li~~Y~Klg~l~e~e~-------f~~~pn--------~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------------- 148 (449)
T 1b89_A 99 ELIFALAKTNRLAELEE-------FINGPN--------NAHIQQVGDRCYDEKMYDAAKLLYNNV--------------- 148 (449)
T ss_dssp ----------CHHHHTT-------TTTCC------------------------CTTTHHHHHHHT---------------
T ss_pred HHHHHHHHhCCHHHHHH-------HHcCCc--------HHHHHHHHHHHHHcCCHHHHHHHHHHh---------------
Confidence 56777777777654332 222211 137888999999999999999999866
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHH----------------------------HHHHHHHHHH
Q 004943 572 QYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWA----------------------------LSVLTALYQQ 623 (722)
Q Consensus 572 ~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~a----------------------------l~~L~~l~~~ 623 (722)
.....||.++..+|++++|.+.++.| +++ ..|- +..+..+|..
T Consensus 149 ~n~~~LA~~L~~Lg~yq~AVea~~KA-------~~~--~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek 219 (449)
T 1b89_A 149 SNFGRLASTLVHLGEYQAAVDGARKA-------NST--RTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQD 219 (449)
T ss_dssp TCHHHHHHHHHTTTCHHHHHHHHHHH-------TCH--HHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHc-------CCc--hhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHH
Confidence 24557888888888888888887776 232 1111 1234578999
Q ss_pred cCCchhHhHHHHHH-------HHHHHHH
Q 004943 624 LGDRGNEMENDEYR-------RKKLDEL 644 (722)
Q Consensus 624 ~Gd~~~A~e~~~~~-------~~~~~~l 644 (722)
.|..+++...++.. +..+.++
T Consensus 220 ~G~~eEai~lLe~aL~le~ah~~~ftel 247 (449)
T 1b89_A 220 RGYFEELITMLEAALGLERAHMGMFTEL 247 (449)
T ss_dssp TTCHHHHHHHHHHHTTSTTCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 99999998888877 5555555
No 186
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.50 E-value=0.00058 Score=56.17 Aligned_cols=82 Identities=17% Similarity=0.033 Sum_probs=65.1
Q ss_pred HHHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHH
Q 004943 409 QFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAM 488 (722)
Q Consensus 409 ~lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~ 488 (722)
..+.++|.++...|++++|++.+.+++++. |+. +.+++.+|.++...|++++|+..|++++....+. ..
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~ 78 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD---PNN-----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---AE 78 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC---CCC-----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---HH
Confidence 344678999999999999999999999863 332 3568899999999999999999999998875432 34
Q ss_pred HHHHHHHHHHhcC
Q 004943 489 CHAYAAVSYFCIG 501 (722)
Q Consensus 489 allnla~v~l~~G 501 (722)
+..++|.++...|
T Consensus 79 ~~~~l~~~~~~~g 91 (91)
T 1na3_A 79 AKQNLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcC
Confidence 5567777776544
No 187
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.47 E-value=0.00081 Score=58.71 Aligned_cols=81 Identities=22% Similarity=0.176 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhH
Q 004943 530 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPT 609 (722)
Q Consensus 530 A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~ 609 (722)
..+++.+|.++...|++++|..++++++++.- + ...++..||.++...|++++|...++.++.+....++...
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p----~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 91 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDP----T---YSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQV 91 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----T---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC----C---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccHHH
Confidence 35789999999999999999999999998821 1 1357889999999999999999999999999988888654
Q ss_pred HHHHHHHH
Q 004943 610 QIWALSVL 617 (722)
Q Consensus 610 q~~al~~L 617 (722)
.......|
T Consensus 92 ~~~l~~~l 99 (115)
T 2kat_A 92 VKELQVFL 99 (115)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 188
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.38 E-value=0.0011 Score=54.42 Aligned_cols=84 Identities=25% Similarity=0.238 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChh
Q 004943 529 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIP 608 (722)
Q Consensus 529 ~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~ 608 (722)
.+.+++.+|.++...|++++|..++++++++.. .+ ..++..+|.++...|++++|.+.++.++.+. ++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~---~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---p~-- 75 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP---NN----AEAWYNLGNAYYKQGDYDEAIEYYQKALELD---PN-- 75 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT--
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC---CC----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---CC--
Confidence 567889999999999999999999999998721 12 4578899999999999999999999999863 22
Q ss_pred HHHHHHHHHHHHHHHcC
Q 004943 609 TQIWALSVLTALYQQLG 625 (722)
Q Consensus 609 ~q~~al~~L~~l~~~~G 625 (722)
...+...++.++...|
T Consensus 76 -~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 76 -NAEAKQNLGNAKQKQG 91 (91)
T ss_dssp -CHHHHHHHHHHHHHHC
T ss_pred -CHHHHHHHHHHHHhcC
Confidence 1446677888776654
No 189
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=97.38 E-value=0.047 Score=57.58 Aligned_cols=239 Identities=10% Similarity=0.007 Sum_probs=150.9
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhC
Q 004943 343 YALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRS 422 (722)
Q Consensus 343 ~aLvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g 422 (722)
-+.-|+..++-. ..+.++|.+.++++|.+ .+.. -..| +..+.+....|
T Consensus 34 ~~~~~~~a~~~~--~e~s~~aL~~t~~~L~~---------nP~~--------~taW-------------n~R~~~L~~l~ 81 (306)
T 3dra_A 34 QIMGLLLALMKA--EEYSERALHITELGINE---------LASH--------YTIW-------------IYRFNILKNLP 81 (306)
T ss_dssp HHHHHHHHHHHT--TCCSHHHHHHHHHHHHH---------CTTC--------HHHH-------------HHHHHHHHTCT
T ss_pred HHHHHHHHHHHc--CCCCHHHHHHHHHHHHH---------CcHH--------HHHH-------------HHHHHHHHHcc
Confidence 455555554443 23346888888888888 2222 4455 22233333444
Q ss_pred --CHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHH----HHh---CCHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 004943 423 --GFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYA----HSV---GCYSEAAFHYVEAAKITESKSMQAMCHAYA 493 (722)
Q Consensus 423 --~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~----~al---G~~~~Al~~f~~AL~l~~~~~~~A~allnl 493 (722)
++.++++.+..++.. .|.- ..+.+.+|.+. ... +++++++..+..++..-... ..++.+-
T Consensus 82 ~~~~~eeL~~~~~~L~~---nPk~-----y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkn---y~aW~~R 150 (306)
T 3dra_A 82 NRNLYDELDWCEEIALD---NEKN-----YQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKN---HHVWSYR 150 (306)
T ss_dssp TSCHHHHHHHHHHHHHH---CTTC-----CHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTC---HHHHHHH
T ss_pred cccHHHHHHHHHHHHHH---Cccc-----HHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Confidence 999999999999875 4443 24577777777 666 79999999999888653322 3455666
Q ss_pred HHHHHhcCChh--HHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHHHHHhcC
Q 004943 494 AVSYFCIGDAE--SSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQD------FQEARNRLAKGLQIAHNHMG 565 (722)
Q Consensus 494 a~v~l~~G~~e--~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~------~~eAk~~L~qAL~la~~~~g 565 (722)
+.+....|.++ ..-+..+.+... ..+++ ++++..|.+....|+ ++++..+..+++.+ .-.
T Consensus 151 ~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~-------sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~---~p~ 218 (306)
T 3dra_A 151 KWLVDTFDLHNDAKELSFVDKVIDT--DLKNN-------SAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK---CPQ 218 (306)
T ss_dssp HHHHHHTTCTTCHHHHHHHHHHHHH--CTTCH-------HHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH---CSS
T ss_pred HHHHHHhcccChHHHHHHHHHHHHh--CCCCH-------HHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh---CCC
Confidence 77777777765 322222222221 22222 466677777777777 88899999988887 244
Q ss_pred ChHHHHHHHHHHHHHHHhCCChHHHH-HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHHHHHH
Q 004943 566 NLQLVSQYLTILGNLALALHDTVQAR-EILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDE 643 (722)
Q Consensus 566 d~~l~a~~L~~LG~~~~a~g~~~qA~-~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~ 643 (722)
| ..+-+.++.++...|+..++. +.+...+.+- . .+ +.-..++..|+++|...|+.++|.+.++....+.|-
T Consensus 219 n----~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~-~-~~-~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dp 290 (306)
T 3dra_A 219 N----PSTWNYLLGIHERFDRSITQLEEFSLQFVDLE-K-DQ-VTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNP 290 (306)
T ss_dssp C----HHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGG-G-TE-ESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCG
T ss_pred C----ccHHHHHHHHHHhcCCChHHHHHHHHHHHhcc-C-CC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccCh
Confidence 4 236678888888888754433 3444433321 0 01 112468899999999999999999988886654433
No 190
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.35 E-value=0.028 Score=61.45 Aligned_cols=193 Identities=8% Similarity=-0.012 Sum_probs=146.3
Q ss_pred HHHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchh---H
Q 004943 409 QFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS---M 485 (722)
Q Consensus 409 ~lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~---~ 485 (722)
..+..||-++...|++++-.+.+......+..+|-. ...-.+..++-.+...-|..+.=...+.+++.-+++.. .
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ka--k~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~fl 97 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKA--KAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHH--HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchH--HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344578999999999999999988888888777753 22334455555555555667777777777776554332 2
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc-
Q 004943 486 QAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHM- 564 (722)
Q Consensus 486 ~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~- 564 (722)
+......+|.+|+..|++..+...+..+...|+..++. .. ....+..-..+|+..|++..++..|.+|.+++. .+
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~-~~--llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~-ai~ 173 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDK-NL--LVEVQLLESKTYHALSNLPKARAALTSARTTAN-AIY 173 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCT-HH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HSC
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccc-hh--HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhc-cCC
Confidence 33455688999999999988777777776666655432 12 334555566788999999999999999999986 46
Q ss_pred CChHHHHHHHHHHHHHHH-hCCChHHHHHHHHHHHHHHHHcCCh
Q 004943 565 GNLQLVSQYLTILGNLAL-ALHDTVQAREILRSSLTLAKKLYDI 607 (722)
Q Consensus 565 gd~~l~a~~L~~LG~~~~-a~g~~~qA~~~l~~Al~lAkki~D~ 607 (722)
.++...|.....-|..+. ..+++.+|-..+-+|+.-....+++
T Consensus 174 ~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~ 217 (394)
T 3txn_A 174 CPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSV 217 (394)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHH
T ss_pred CCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccH
Confidence 889999999999999999 8999999999999999888877765
No 191
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.27 E-value=0.00073 Score=58.18 Aligned_cols=65 Identities=9% Similarity=0.005 Sum_probs=55.2
Q ss_pred HHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcc
Q 004943 410 FLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES 482 (722)
Q Consensus 410 lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~ 482 (722)
++.++|.++...|+|++|++.+++++++. |+. +.+++.+|.++..+|++++|...|++++.+...
T Consensus 9 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~-----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 9 TRYALAQEHLKHDNASRALALFEELVETD---PDY-----VGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTC-----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 34678999999999999999999999874 332 246889999999999999999999999977544
No 192
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.22 E-value=0.002 Score=56.19 Aligned_cols=92 Identities=14% Similarity=0.039 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHH
Q 004943 468 EAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQ 547 (722)
Q Consensus 468 ~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~ 547 (722)
+|+..|++++....+. ..++.++|.+|...|+++.+...++.+..... . -..+++.+|.++...|+++
T Consensus 3 ~a~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~----~~~~~~~la~~~~~~g~~~ 70 (115)
T 2kat_A 3 AITERLEAMLAQGTDN---MLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-----T----YSVAWKWLGKTLQGQGDRA 70 (115)
T ss_dssp CHHHHHHHHHTTTCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----T----CHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHhCCCc---HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-----C----cHHHHHHHHHHHHHcCCHH
Confidence 4666676666544332 34567777788777777765555554443311 1 2347788999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCChHHHHH
Q 004943 548 EARNRLAKGLQIAHNHMGNLQLVSQ 572 (722)
Q Consensus 548 eAk~~L~qAL~la~~~~gd~~l~a~ 572 (722)
+|...|++++++.. ..++......
T Consensus 71 ~A~~~~~~al~~~~-~~~~~~~~~~ 94 (115)
T 2kat_A 71 GARQAWESGLAAAQ-SRGDQQVVKE 94 (115)
T ss_dssp HHHHHHHHHHHHHH-HHTCHHHHHH
T ss_pred HHHHHHHHHHHhcc-ccccHHHHHH
Confidence 99999999999965 4666544433
No 193
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.21 E-value=0.0067 Score=64.26 Aligned_cols=168 Identities=13% Similarity=-0.005 Sum_probs=106.0
Q ss_pred hhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcc-hh--HHHHH
Q 004943 413 NKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES-KS--MQAMC 489 (722)
Q Consensus 413 ~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~-~~--~~A~a 489 (722)
.+|.++...|++++|++.+.+.++. .|. ....-+..+...++..+|+.+.|...++...+...+ .. .....
T Consensus 105 ~la~i~~~~g~~eeAL~~l~~~i~~---~~~---~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~ 178 (310)
T 3mv2_B 105 LLATAQAILGDLDKSLETCVEGIDN---DEA---EGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMIL 178 (310)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTS---SCS---TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhcc---CCC---cCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHH
Confidence 4799999999999999999887542 220 112345677889999999999999999766554432 01 22333
Q ss_pred HHHHHHHHHhcC--ChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH----Hh
Q 004943 490 HAYAAVSYFCIG--DAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAH----NH 563 (722)
Q Consensus 490 llnla~v~l~~G--~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~----~~ 563 (722)
.+.-|++.+..| ++.++...++. +....++ . .-...+++ ++.++|++++|...|+..++..- ++
T Consensus 179 ~Laea~v~l~~g~~~~q~A~~~f~E---l~~~~p~---~-~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~ 248 (310)
T 3mv2_B 179 NLAESYIKFATNKETATSNFYYYEE---LSQTFPT---W-KTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKE 248 (310)
T ss_dssp HHHHHHHHHHHTCSTTTHHHHHHHH---HHTTSCS---H-HHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCH
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHH---HHHhCCC---c-ccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccc
Confidence 333366677767 44444444443 3222221 1 11233444 68899999999999997777631 11
Q ss_pred cCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 004943 564 MGNLQLVSQYLTILGNLALALHDTVQAREILRSSLT 599 (722)
Q Consensus 564 ~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~ 599 (722)
.++ .--+.++.++..+....|+ +|.+++.++..
T Consensus 249 ~~~-p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 249 NAV-LYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHH-SSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred cCC-CCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 112 3346778777778888887 66666555544
No 194
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.19 E-value=0.01 Score=62.91 Aligned_cols=173 Identities=9% Similarity=0.082 Sum_probs=110.4
Q ss_pred HHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHH
Q 004943 349 MVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQ 428 (722)
Q Consensus 349 ls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~ 428 (722)
+-+..+...|++++|.+.+++++.. +...+ ..-+.--++.+++..|+.++|.
T Consensus 105 ~la~i~~~~g~~eeAL~~l~~~i~~--------~~~~~--------------------~lea~~l~vqi~L~~~r~d~A~ 156 (310)
T 3mv2_B 105 LLATAQAILGDLDKSLETCVEGIDN--------DEAEG--------------------TTELLLLAIEVALLNNNVSTAS 156 (310)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTS--------SCSTT--------------------HHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhcc--------CCCcC--------------------cHHHHHHHHHHHHHCCCHHHHH
Confidence 4456666679999999988887544 11012 1111122589999999999999
Q ss_pred HHHHHHHHHHHhCCchhhh-hHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhH
Q 004943 429 EALVQMKNWFIRFPTILQA-CESMIEMLRGQYAHSVG--CYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES 505 (722)
Q Consensus 429 ~~l~~Al~l~~~~~d~~~~-~~a~i~~llG~~~~alG--~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~ 505 (722)
+.++++.+. .||.... ....+....|++....| ++.+|...|++......+. .....+.| +++.+|++++
T Consensus 157 k~l~~~~~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~-~~~~lLln---~~~~~g~~~e 229 (310)
T 3mv2_B 157 TIFDNYTNA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTW-KTQLGLLN---LHLQQRNIAE 229 (310)
T ss_dssp HHHHHHHHH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSH-HHHHHHHH---HHHHHTCHHH
T ss_pred HHHHHHHhc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCc-ccHHHHHH---HHHHcCCHHH
Confidence 999988664 3420001 12234444587777777 9999999999865544331 12233344 7999999999
Q ss_pred HHHHHHHhcchhcccccc--cChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 004943 506 SSQAIDLIGPVYQMKDTI--NGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQI 559 (722)
Q Consensus 506 a~~aL~l~~~l~r~~~~~--~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~l 559 (722)
+.+.|+.+...+-.-++. .+. .-+.++.++..+....|+ +|.++++++.+.
T Consensus 230 Ae~~L~~l~~~~p~~~~k~~~~p-~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 230 AQGIVELLLSDYYSVEQKENAVL-YKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHHHHHHSHHHHTTTCHHHHS-SHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccccCCC-CCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 988888665542110000 000 134667677777778898 899999998776
No 195
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.02 E-value=0.003 Score=58.02 Aligned_cols=111 Identities=10% Similarity=0.004 Sum_probs=81.6
Q ss_pred hCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHh-
Q 004943 421 RSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFC- 499 (722)
Q Consensus 421 ~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~- 499 (722)
..++++|++.++++.+. ++. .+. +|.++..-+.+++|..+|+.|... +...+..++|.+|..
T Consensus 8 ~~d~~~A~~~~~~aa~~----g~~----~a~----lg~~y~~g~~~~~A~~~~~~Aa~~-----g~~~a~~~Lg~~y~~G 70 (138)
T 1klx_A 8 KKDLKKAIQYYVKACEL----NEM----FGC----LSLVSNSQINKQKLFQYLSKACEL-----NSGNGCRFLGDFYENG 70 (138)
T ss_dssp HHHHHHHHHHHHHHHHT----TCT----THH----HHHHTCTTSCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHHcC----CCH----hhh----HHHHHHcCCCHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHcC
Confidence 45788888888888763 222 122 899988889999999999988765 446778999999987
Q ss_pred ---cCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHH
Q 004943 500 ---IGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMR----QQDFQEARNRLAKGLQI 559 (722)
Q Consensus 500 ---~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~----~G~~~eAk~~L~qAL~l 559 (722)
.+|++.+...++..-.. + -+.+.+.+|.+|.. .+++.+|..+|++|.+.
T Consensus 71 ~g~~~d~~~A~~~~~~Aa~~-------g----~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 71 KYVKKDLRKAAQYYSKACGL-------N----DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp SSSCCCHHHHHHHHHHHHHT-------T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred CCCCccHHHHHHHHHHHHcC-------C----CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 44554444444433221 1 23578899999998 99999999999999654
No 196
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.62 E-value=0.0021 Score=61.45 Aligned_cols=66 Identities=18% Similarity=0.027 Sum_probs=48.6
Q ss_pred HHHHhhHHHHHhhCCH----------HHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHh-----------CCHH
Q 004943 409 QFLENKVAVELTRSGF----------VEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSV-----------GCYS 467 (722)
Q Consensus 409 ~lLe~Lg~~~l~~g~~----------~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~al-----------G~~~ 467 (722)
..+.++|.+....|++ ++|+..|++|+++ .|+. +.+++++|..+..+ |+++
T Consensus 37 ea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l---dP~~-----~~A~~~LG~ay~~lg~l~P~~~~a~g~~~ 108 (158)
T 1zu2_A 37 DNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI---DPKK-----DEAVWCIGNAYTSFAFLTPDETEAKHNFD 108 (158)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---CTTC-----HHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh---CcCc-----HHHHHHHHHHHHHhcccCcchhhhhccHH
Confidence 3445678888777765 4888888888876 3442 34577888888776 4899
Q ss_pred HHHHHHHHHHHhhcc
Q 004943 468 EAAFHYVEAAKITES 482 (722)
Q Consensus 468 ~Al~~f~~AL~l~~~ 482 (722)
+|+..|++|+.+-.+
T Consensus 109 eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 109 LATQFFQQAVDEQPD 123 (158)
T ss_dssp HHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCCC
Confidence 999999999987554
No 197
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.56 E-value=0.11 Score=56.14 Aligned_cols=147 Identities=11% Similarity=0.016 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH-HhcCC-hh----HHHHHHHHhcchhcc
Q 004943 449 ESMIEMLRGQYAHSVG---CYSEAAFHYVEAAKITESKSMQAMCHAYAAVSY-FCIGD-AE----SSSQAIDLIGPVYQM 519 (722)
Q Consensus 449 ~a~i~~llG~~~~alG---~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~-l~~G~-~e----~a~~aL~l~~~l~r~ 519 (722)
.+.-+++.|..+...+ .+.+|..+|++|+.+-.+. ..+++.+.++.++ ...+. .. ...+++..+..+-.
T Consensus 195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~-a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~- 272 (372)
T 3ly7_A 195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEF-TYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPE- 272 (372)
T ss_dssp GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGG-
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhccc-
Confidence 4566888888877765 4579999999999775443 2222222222221 11121 11 14444443322211
Q ss_pred cccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 004943 520 KDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLT 599 (722)
Q Consensus 520 ~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~ 599 (722)
+ . ..+.++..+|.++...|++++|..++++|+.+ + +. +.++..+|.++.-.|++++|.+.+..|+.
T Consensus 273 -~-~----~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L-n----~s---~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 273 -L-N----NLSIIYQIKAVSALVKGKTDESYQAINTGIDL-E----MS---WLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp -G-T----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C----CC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -C-C----cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-C----CC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 1 1 14567888888888899999999999999999 3 21 45778999999999999999999999988
Q ss_pred HHHHcCChhHHHHHH
Q 004943 600 LAKKLYDIPTQIWAL 614 (722)
Q Consensus 600 lAkki~D~~~q~~al 614 (722)
+ -+..++-.|+-
T Consensus 339 L---~P~~~t~~~~~ 350 (372)
T 3ly7_A 339 L---RPGANTLYWIE 350 (372)
T ss_dssp H---SCSHHHHHHHH
T ss_pred c---CCCcChHHHHh
Confidence 7 35555555544
No 198
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.53 E-value=0.45 Score=52.59 Aligned_cols=218 Identities=9% Similarity=-0.034 Sum_probs=144.5
Q ss_pred hhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchh-HHHHHHHHHHHHHH
Q 004943 420 TRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS-MQAMCHAYAAVSYF 498 (722)
Q Consensus 420 ~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~-~~A~allnla~v~l 498 (722)
..|++.+|++.+...-.-.+...|.. ....+...+-..+...|+++...+++. .|...++.. .......+...-|+
T Consensus 28 ~~~~~~~a~e~ll~lEK~~r~~~d~~--s~~r~l~~iv~l~~~~~~~~~l~e~i~-~Lskkr~qlk~ai~~~V~~~~~~l 104 (445)
T 4b4t_P 28 AQNDCNSALDQLLVLEKKTRQASDLA--SSKEVLAKIVDLLASRNKWDDLNEQLT-LLSKKHGQLKLSIQYMIQKVMEYL 104 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHSSSCSTT--TCHHHHHHHHHHHHHHSCHHHHHHHHH-HHHTTTTTSHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHhhhccchh--hHHHHHHHHHHHHHHhccHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHHH
Confidence 35789999988766666666677763 335566667778899999999888874 222222211 22222333344444
Q ss_pred hc-CChhHHHHHHHHhcchhcccccccC-hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 004943 499 CI-GDAESSSQAIDLIGPVYQMKDTING-VREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTI 576 (722)
Q Consensus 499 ~~-G~~e~a~~aL~l~~~l~r~~~~~~~-~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~ 576 (722)
.. ...+ ...-+..+..+.....+... -.++|.....++.++...|++.+|...+.+-..-+. ..-+...-......
T Consensus 105 ~~~~~~d-~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~-~~~~~~~kve~~l~ 182 (445)
T 4b4t_P 105 KSSKSLD-LNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETY-GSMEMSEKIQFILE 182 (445)
T ss_dssp HHHCTTH-HHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-SSSCHHHHHHHHHH
T ss_pred hcCCchh-HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH-hcccHHHHHHHHHH
Confidence 31 1122 11122333333222221111 124677788899999999999999999999887654 34556666677777
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHc-CChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHHHHH
Q 004943 577 LGNLALALHDTVQAREILRSSLTLAKKL-YDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLD 642 (722)
Q Consensus 577 LG~~~~a~g~~~qA~~~l~~Al~lAkki-~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~ 642 (722)
...+|+..+|+.+|...++.+..-+... +++..++.-....+.+|...+++..|..+|........
T Consensus 183 q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~ 249 (445)
T 4b4t_P 183 QMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDA 249 (445)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccc
Confidence 8899999999999999999998766555 55666777788999999999999888776666555443
No 199
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.53 E-value=0.024 Score=51.81 Aligned_cols=110 Identities=15% Similarity=0.146 Sum_probs=80.0
Q ss_pred CCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHh-
Q 004943 464 GCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMR- 542 (722)
Q Consensus 464 G~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~- 542 (722)
+++++|+.+|+++...- +.. +. +|.+|...+..+. +++.....+.. + -+.+.+.+|.+|..
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~--a~----lg~~y~~g~~~~~---A~~~~~~Aa~~----g----~~~a~~~Lg~~y~~G 70 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMF--GC----LSLVSNSQINKQK---LFQYLSKACEL----N----SGNGCRFLGDFYENG 70 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTT--HH----HHHHTCTTSCHHH---HHHHHHHHHHT----T----CHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHcCC-CHh--hh----HHHHHHcCCCHHH---HHHHHHHHHcC----C----CHHHHHHHHHHHHcC
Confidence 47899999998887543 221 22 7888877555554 33333332221 1 23678999999998
Q ss_pred ---cCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHh----CCChHHHHHHHHHHHHH
Q 004943 543 ---QQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALA----LHDTVQAREILRSSLTL 600 (722)
Q Consensus 543 ---~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a----~g~~~qA~~~l~~Al~l 600 (722)
.+++.+|..+|++|.+. |+ ..+...||.+|.. .+|.++|...++.|...
T Consensus 71 ~g~~~d~~~A~~~~~~Aa~~-----g~----~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 71 KYVKKDLRKAAQYYSKACGL-----ND----QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp SSSCCCHHHHHHHHHHHHHT-----TC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred CCCCccHHHHHHHHHHHHcC-----CC----HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 89999999999999543 44 3577899999999 89999999999988764
No 200
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.49 E-value=0.67 Score=51.22 Aligned_cols=191 Identities=13% Similarity=0.092 Sum_probs=129.5
Q ss_pred HHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHH-HHHHHHHhh-cch----h
Q 004943 411 LENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAF-HYVEAAKIT-ESK----S 484 (722)
Q Consensus 411 Le~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~-~f~~AL~l~-~~~----~ 484 (722)
+..++-++...++|+...+.+.- +....+.+-......+....+.+.. ....+.... ...+.++.. .++ .
T Consensus 59 l~~iv~l~~~~~~~~~l~e~i~~---Lskkr~qlk~ai~~~V~~~~~~l~~-~~~~d~~~~~~~i~~l~~vte~kiflE~ 134 (445)
T 4b4t_P 59 LAKIVDLLASRNKWDDLNEQLTL---LSKKHGQLKLSIQYMIQKVMEYLKS-SKSLDLNTRISVIETIRVVTENKIFVEV 134 (445)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHH---HHTTTTTSHHHHHHHHHHHHHHHHH-HCTTHHHHHHHHHHCCSSSSSCCCCCCH
T ss_pred HHHHHHHHHHhccHHHHHHHHHH---HHHHhhhhHHHHHHHHHHHHHHHhc-CCchhHHHHHHHHHHHHHHhccchHHHH
Confidence 34567788889999988776542 2233343222333444444444432 222221111 111111111 111 1
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHHHhc-chhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 004943 485 MQAMCHAYAAVSYFCIGDAESSSQAIDLIG-PVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNH 563 (722)
Q Consensus 485 ~~A~allnla~v~l~~G~~e~a~~aL~l~~-~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~ 563 (722)
.++-....+|.+|...|++.++...|..+. +.++.. +...+...+.....++...+++.+|+..+.++...+...
T Consensus 135 erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~----~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~ 210 (445)
T 4b4t_P 135 ERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSM----EMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKN 210 (445)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSS----CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhccc
Confidence 467777888999999999988666666543 333332 234577888888899999999999999999998766666
Q ss_pred cCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhH
Q 004943 564 MGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPT 609 (722)
Q Consensus 564 ~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~ 609 (722)
..++.+.+.....+|.++...+++.+|-.++.+++......+|+..
T Consensus 211 ~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~ 256 (445)
T 4b4t_P 211 PKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAK 256 (445)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHH
Confidence 6778899999999999999999999999999999999988888744
No 201
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.43 E-value=0.015 Score=50.57 Aligned_cols=70 Identities=14% Similarity=0.075 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q 004943 531 SLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTL 600 (722)
Q Consensus 531 ~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~l 600 (722)
.-.+.+|..++.+|+|.+|..-|++|++..............++..||.+++..|+.+.|..+++.|+.+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 4567899999999999999999999999864321112345678899999999999999999999999875
No 202
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.43 E-value=0.3 Score=53.32 Aligned_cols=185 Identities=15% Similarity=-0.023 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchh--HHHHHHHHHHHHHHhcCCh-hH----HHHHHHHhcchhcccccc
Q 004943 451 MIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS--MQAMCHAYAAVSYFCIGDA-ES----SSQAIDLIGPVYQMKDTI 523 (722)
Q Consensus 451 ~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~--~~A~allnla~v~l~~G~~-e~----a~~aL~l~~~l~r~~~~~ 523 (722)
.+.+.+|.++...|++++-..++..........+ -.+=...++-..+....+. +. +.++++..... +.
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~-----~r 94 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQE-----KR 94 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT-----TC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH-----HH
Confidence 4567789999999999999998865443333332 2222223332333222222 21 34444433322 01
Q ss_pred cChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Q 004943 524 NGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKK 603 (722)
Q Consensus 524 ~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkk 603 (722)
..-+...-..+|..+...|+|.+|...+.+.++-.++ ..|....-.+...-..+|...++...+...+.+|.+.+..
T Consensus 95 --~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~-~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~a 171 (394)
T 3txn_A 95 --TFLRQSLEARLIALYFDTALYTEALALGAQLLRELKK-LDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANA 171 (394)
T ss_dssp --HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT-SSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc-cccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcc
Confidence 1113444557899999999999999999999998764 5555555667777779999999999999999999999999
Q ss_pred c-CChhHHHHHHHHHHHHHH-HcCCchhHhHHHHHHHHHHHH
Q 004943 604 L-YDIPTQIWALSVLTALYQ-QLGDRGNEMENDEYRRKKLDE 643 (722)
Q Consensus 604 i-~D~~~q~~al~~L~~l~~-~~Gd~~~A~e~~~~~~~~~~~ 643 (722)
+ .||..+......-|.+|. ..+++..|...|=...+.+++
T Consensus 172 i~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~ 213 (394)
T 3txn_A 172 IYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDS 213 (394)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccc
Confidence 9 888888888888888888 799999997777665444433
No 203
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.30 E-value=0.073 Score=55.76 Aligned_cols=138 Identities=11% Similarity=0.020 Sum_probs=93.1
Q ss_pred chhHHHHHHHHHHHH-HHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHH---hcCC------HHHHHH
Q 004943 482 SKSMQAMCHAYAAVS-YFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLM---RQQD------FQEARN 551 (722)
Q Consensus 482 ~~~~~A~allnla~v-~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~---~~G~------~~eAk~ 551 (722)
+-+.+++|..+-+.. -+..|+......+|..+.+- ++ ++.++...+..-. ..|. ..+|+.
T Consensus 115 ~y~~raL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------dv--e~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a 184 (301)
T 3u64_A 115 RYALSSLETAYPGFTREVFSGDEQRLHKVLSRCTRV--------DV--GTLYWVGTGYVAAFALTPLGSALPDTVHAAVM 184 (301)
T ss_dssp HHHHHHHHHHSTTHHHHHTSSCHHHHHHHHTTCCGG--------GH--HHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHhCccHHHHHHhcchhhHHHHHHHcCcc--------cc--HHHHHHHHHHHHHHhcCCCChHHHHhHHHHHH
Confidence 345666666555555 45556655566666554432 12 4444444433222 1233 467888
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHh-----CCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH-cC
Q 004943 552 RLAKGLQIAHNHMGNLQLVSQYLTILGNLALA-----LHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQ-LG 625 (722)
Q Consensus 552 ~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a-----~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~-~G 625 (722)
.+++|+++- .....+.+.+.||.+|.. .|+.+.|+.++++|+++.-.- -+.+.+.+++.+.. .|
T Consensus 185 ~lerAleLD-----P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~-----~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 185 MLERACDLW-----PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH-----DPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHC-----TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT-----CSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHhC-----CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC-----CchHHHHHHHHHHHhcC
Confidence 999998882 236677899999999999 599999999999999997522 13467788887776 59
Q ss_pred CchhHhHHHHHHHH
Q 004943 626 DRGNEMENDEYRRK 639 (722)
Q Consensus 626 d~~~A~e~~~~~~~ 639 (722)
|++.+..+++.+..
T Consensus 255 d~~~a~~~L~kAL~ 268 (301)
T 3u64_A 255 NRAGFDEALDRALA 268 (301)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHc
Confidence 99999888877655
No 204
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=96.27 E-value=0.17 Score=54.44 Aligned_cols=246 Identities=7% Similarity=-0.027 Sum_probs=144.6
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhC
Q 004943 343 YALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRS 422 (722)
Q Consensus 343 ~aLvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g 422 (722)
.+.-|+-.++.. ..+.++|.+.+++++.+ ++.. -..|.- +..+ ....|
T Consensus 55 ~~~~~~r~~~~~--~e~se~AL~lt~~~L~~---------nP~~--------ytaWn~------R~~i-------L~~l~ 102 (349)
T 3q7a_A 55 DAMDYFRAIAAK--EEKSERALELTEIIVRM---------NPAH--------YTVWQY------RFSL-------LTSLN 102 (349)
T ss_dssp HHHHHHHHHHHT--TCCSHHHHHHHHHHHHH---------CTTC--------HHHHHH------HHHH-------HHHTT
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHh---------Cchh--------HHHHHH------HHHH-------HHHhh
Confidence 455555554443 33446888888888877 2222 345521 2223 23345
Q ss_pred -CHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHh-C-CHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHh
Q 004943 423 -GFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSV-G-CYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFC 499 (722)
Q Consensus 423 -~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~al-G-~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~ 499 (722)
++.++++.+..++. ..|.- ..+.+.+|.+...+ + ++++++..+..++..-.. -..|+.+-+.+...
T Consensus 103 ~~l~eEL~~~~~~L~---~nPKn-----y~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk---Ny~AW~~R~wvl~~ 171 (349)
T 3q7a_A 103 KSLEDELRLMNEFAV---QNLKS-----YQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPK---NYHTWAYLHWLYSH 171 (349)
T ss_dssp CCHHHHHHHHHHHHH---TTCCC-----HHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTT---CHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH---hCCCc-----HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHH
Confidence 69999999998875 45553 36788899999998 8 999999999887754321 12333444444433
Q ss_pred cCChh-----HHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHHHHHhcCCh
Q 004943 500 IGDAE-----SSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQD-------FQEARNRLAKGLQIAHNHMGNL 567 (722)
Q Consensus 500 ~G~~e-----~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~-------~~eAk~~L~qAL~la~~~~gd~ 567 (722)
.|..+ -..+.++.+........++ -.+++..|.+....|+ ++++..+..+++.+ .-+|.
T Consensus 172 l~~~~~~~~~~~~eELe~~~k~I~~dp~N------~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~---~P~n~ 242 (349)
T 3q7a_A 172 FSTLGRISEAQWGSELDWCNEMLRVDGRN------NSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL---IPHNV 242 (349)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH---CTTCH
T ss_pred hccccccchhhHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh---CCCCH
Confidence 33333 1345555554443332211 1577778888888776 67888888888877 24441
Q ss_pred HHHHHHHHHHHHHHHhCCChHH-----------------HHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHHHHHcCCc
Q 004943 568 QLVSQYLTILGNLALALHDTVQ-----------------AREILRSSLTLAKKLY---DIPTQIWALSVLTALYQQLGDR 627 (722)
Q Consensus 568 ~l~a~~L~~LG~~~~a~g~~~q-----------------A~~~l~~Al~lAkki~---D~~~q~~al~~L~~l~~~~Gd~ 627 (722)
.+-+.+..++...|+..- -.+...-+..+....+ ....-..++..|+++|...|+.
T Consensus 243 ----SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~ 318 (349)
T 3q7a_A 243 ----SAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRV 318 (349)
T ss_dssp ----HHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCH
T ss_pred ----HHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCH
Confidence 255566677777776510 0122222222222210 0012255888999999999999
Q ss_pred hhHhHHHHHHHHHHHHH
Q 004943 628 GNEMENDEYRRKKLDEL 644 (722)
Q Consensus 628 ~~A~e~~~~~~~~~~~l 644 (722)
.+|.+.++....+.|-+
T Consensus 319 ~~a~~~~~~l~~~~dpi 335 (349)
T 3q7a_A 319 DDAAKVFEKLSSEYDQM 335 (349)
T ss_dssp HHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHhhhChH
Confidence 99988887766555444
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.22 E-value=0.0073 Score=57.73 Aligned_cols=87 Identities=6% Similarity=-0.028 Sum_probs=62.9
Q ss_pred HHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChh----------HHHHHHHHhcchhcccccccChHHHH
Q 004943 461 HSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAE----------SSSQAIDLIGPVYQMKDTINGVREEA 530 (722)
Q Consensus 461 ~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e----------~a~~aL~l~~~l~r~~~~~~~~~~~A 530 (722)
..+++|++|...|+.++.+..+ .+.++.|+|.++...|+++ ++...++.+..+ .+ ..+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~---~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l---dP------~~~ 80 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL---DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI---DP------KKD 80 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---CT------TCH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh---Cc------CcH
Confidence 5677899999999888876544 3456778888888877654 333334333333 11 134
Q ss_pred HHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHH
Q 004943 531 SLHFAYGLLLMRQQ-----------DFQEARNRLAKGLQI 559 (722)
Q Consensus 531 ~al~~lG~~~~~~G-----------~~~eAk~~L~qAL~l 559 (722)
.+++++|.+|..+| ++++|..+|++||++
T Consensus 81 ~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 81 EAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 68899999999875 899999999999999
No 206
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.19 E-value=0.078 Score=57.39 Aligned_cols=142 Identities=16% Similarity=0.141 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHHhc
Q 004943 487 AMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLM--RQQDFQEARNRLAKGLQIAHNHM 564 (722)
Q Consensus 487 A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~--~~G~~~eAk~~L~qAL~la~~~~ 564 (722)
|+-+.--|.-|+..++++...++.+++......-+++. .|.+...++.+.. ..+.......-++++++.+. ++
T Consensus 196 Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a----~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~-a~ 270 (372)
T 3ly7_A 196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFT----YARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV-TL 270 (372)
T ss_dssp GHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH-TC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH-hc
Confidence 33333335666667887776666666655443333332 3333323322221 22223334455666666433 34
Q ss_pred CChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHHH
Q 004943 565 GNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 640 (722)
Q Consensus 565 gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~ 640 (722)
......+.++..++..++-.|++++|...+++|+.+- ++ ..++..+|.++...|++++|.++|+.+.+.
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln---~s----~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE---MS----WLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---CC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC---CC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 4446677888899988888899999999999999993 33 346688999999999999999999877654
No 207
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.18 E-value=0.0088 Score=50.18 Aligned_cols=62 Identities=16% Similarity=0.167 Sum_probs=53.2
Q ss_pred hhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHhhcc
Q 004943 413 NKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESM-IEMLRGQYAHSVGCYSEAAFHYVEAAKITES 482 (722)
Q Consensus 413 ~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~-i~~llG~~~~alG~~~~Al~~f~~AL~l~~~ 482 (722)
+.|.++...|+|++|++.++++++. .|+. +. +++.+|.++..+|++++|+..|++++.+..+
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~---~p~~-----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 67 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQT---EPVG-----KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD 67 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH---CSST-----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH---CCCc-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 4688999999999999999999885 3442 34 7899999999999999999999999987544
No 208
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.03 E-value=0.42 Score=50.05 Aligned_cols=122 Identities=7% Similarity=0.034 Sum_probs=78.1
Q ss_pred HHHHHHhhcchhHHHHHHHHHHHH-HHh--cCChhH---HHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhc---
Q 004943 473 YVEAAKITESKSMQAMCHAYAAVS-YFC--IGDAES---SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQ--- 543 (722)
Q Consensus 473 f~~AL~l~~~~~~~A~allnla~v-~l~--~G~~e~---a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~--- 543 (722)
|.+++........+++.+..+++. |+. .|++.. +.++...+...+..-.++ ....++..+|.+|...
T Consensus 140 ~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~----~~GsA~~~LG~lY~~vPp~ 215 (301)
T 3u64_A 140 LHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSY----QEGAVWNVLTKFYAAAPES 215 (301)
T ss_dssp HHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTH----HHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCc----ccCHHHHHHHHHHHhCCCc
Confidence 344455554444555555555443 333 355432 333333333322211111 2567899999999884
Q ss_pred --CCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHHc
Q 004943 544 --QDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALA-LHDTVQAREILRSSLTLAKKL 604 (722)
Q Consensus 544 --G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a-~g~~~qA~~~l~~Al~lAkki 604 (722)
|+.++|+.+|++||++.- .++ ..+.+..|+.+.. .|+.++|...++.|+..--..
T Consensus 216 ~gGd~ekA~~~ferAL~LnP--~~~----id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 216 FGGGMEKAHTAFEHLTRYCS--AHD----PDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp TTCCHHHHHHHHHHHHHHCC--TTC----SHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred cCCCHHHHHHHHHHHHHhCC--CCC----chHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 999999999999999932 222 2578899998888 499999999999998855443
No 209
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=95.69 E-value=0.34 Score=50.94 Aligned_cols=217 Identities=7% Similarity=-0.044 Sum_probs=134.1
Q ss_pred HHhhccCC--ChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHH
Q 004943 351 VILGRPKG--LFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQ 428 (722)
Q Consensus 351 ~~~~~~kg--~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~ 428 (722)
+.+....| .++++.++++.++.. .+.. -.+|.-+- .++..+....-..+++.+++
T Consensus 74 ~~~L~~l~~~~~~eeL~~~~~~L~~---------nPk~--------y~aW~~R~------~iL~~~~~~l~~~~~~~~EL 130 (306)
T 3dra_A 74 FNILKNLPNRNLYDELDWCEEIALD---------NEKN--------YQIWNYRQ------LIIGQIMELNNNDFDPYREF 130 (306)
T ss_dssp HHHHHTCTTSCHHHHHHHHHHHHHH---------CTTC--------CHHHHHHH------HHHHHHHHHTTTCCCTHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHH---------Cccc--------HHHHHHHH------HHHHHHHHhccccCCHHHHH
Confidence 34444445 788888888888776 2222 34564332 22211111100137899999
Q ss_pred HHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHH--HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCCh---
Q 004943 429 EALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYS--EAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDA--- 503 (722)
Q Consensus 429 ~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~--~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~--- 503 (722)
+.+.++++. .|.- ..+.+.+|.+...+|.++ +++..+..++..-.+ -..|+.+-+.+....|+.
T Consensus 131 ~~~~~~l~~---~pkn-----y~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~---N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 131 DILEAMLSS---DPKN-----HHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK---NNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp HHHHHHHHH---CTTC-----HHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHSSGGGCCH
T ss_pred HHHHHHHHh---CCCC-----HHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhccccchh
Confidence 999999874 4443 367889999999999999 999999888754321 134445556665555541
Q ss_pred hHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 004943 504 ESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQE-ARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLAL 582 (722)
Q Consensus 504 e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~e-Ak~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~ 582 (722)
+...++++.+........++ . .+++.++.+....|+..+ .+.+..+.+++. +. + .--..++..|+.++.
T Consensus 200 ~~~~eEl~~~~~aI~~~p~n-----~-SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~--~~-~-~~s~~al~~la~~~~ 269 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKCPQN-----P-STWNYLLGIHERFDRSITQLEEFSLQFVDLE--KD-Q-VTSSFALETLAKIYT 269 (306)
T ss_dssp HHHHHHHHHHHHHHHHCSSC-----H-HHHHHHHHHHHHTTCCGGGGHHHHHTTEEGG--GT-E-ESCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCCC-----c-cHHHHHHHHHHhcCCChHHHHHHHHHHHhcc--CC-C-CCCHHHHHHHHHHHH
Confidence 22566666665544333222 2 567777777778888444 556666666541 11 1 222358999999999
Q ss_pred hCCChHHHHHHHHHHHHHHHHcCChhHHHHHH
Q 004943 583 ALHDTVQAREILRSSLTLAKKLYDIPTQIWAL 614 (722)
Q Consensus 583 a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al 614 (722)
..|+.++|.++++.+ +++..-....-|-.
T Consensus 270 ~~~~~~~A~~~~~~l---~~~~Dpir~~yW~~ 298 (306)
T 3dra_A 270 QQKKYNESRTVYDLL---KSKYNPIRSNFWDY 298 (306)
T ss_dssp HTTCHHHHHHHHHHH---HHTTCGGGHHHHHH
T ss_pred ccCCHHHHHHHHHHH---HhccChHHHHHHHH
Confidence 999999999998874 33444444445543
No 210
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.67 E-value=0.037 Score=46.27 Aligned_cols=61 Identities=23% Similarity=0.157 Sum_probs=52.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHH-HHHHHHHHHHhCCChHHHHHHHHHHHHHH
Q 004943 534 FAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQ-YLTILGNLALALHDTVQAREILRSSLTLA 601 (722)
Q Consensus 534 ~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~-~L~~LG~~~~a~g~~~qA~~~l~~Al~lA 601 (722)
+..|..+...|++.+|...++++++.. -.+ .. ++..+|.++...|++++|.+.++.++.+.
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~---p~~----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTE---PVG----KDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC---SST----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC---CCc----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 457888889999999999999999872 112 34 78899999999999999999999999764
No 211
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.58 E-value=0.11 Score=44.97 Aligned_cols=79 Identities=6% Similarity=-0.106 Sum_probs=62.8
Q ss_pred HhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHH
Q 004943 412 ENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHA 491 (722)
Q Consensus 412 e~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~all 491 (722)
..+|..+...++|..|..-+++|+......+.. ....+.++..+|.++..+|+++.|+.++++++++..+. ..++.
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~-~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~---~~~~~ 84 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEIS-TIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH---QRANG 84 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCC-SSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCC-cccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHh
Confidence 468999999999999999999999988654321 12356889999999999999999999999999875443 22345
Q ss_pred HHH
Q 004943 492 YAA 494 (722)
Q Consensus 492 nla 494 (722)
|++
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 554
No 212
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.46 E-value=0.034 Score=47.89 Aligned_cols=67 Identities=16% Similarity=0.054 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Q 004943 530 ASLHFAYGLLLMRQQD---FQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKK 603 (722)
Q Consensus 530 A~al~~lG~~~~~~G~---~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkk 603 (722)
+..+..+|.++...++ .++|+.+|++||++. .....++..||..++..|++++|.+.|+..+.....
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-------p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-------PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4567788888876665 799999999999982 233468899999999999999999999999876544
No 213
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=94.59 E-value=3 Score=48.56 Aligned_cols=174 Identities=7% Similarity=0.029 Sum_probs=107.0
Q ss_pred hHHHHHhhCCHHHHHHHHHHHHHHHH--------hCCch------hhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 004943 414 KVAVELTRSGFVEAQEALVQMKNWFI--------RFPTI------LQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKI 479 (722)
Q Consensus 414 Lg~~~l~~g~~~eA~~~l~~Al~l~~--------~~~d~------~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l 479 (722)
.+......|++++|.+.|++++..+. ..|.. .....+.++.....+....|..+.|...|..|+..
T Consensus 384 ~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~ 463 (679)
T 4e6h_A 384 LSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL 463 (679)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 36667778999999999999998652 23420 00112344555566667788999999999988876
Q ss_pred hcchhHHHHHHHHHHHHHHhcC-ChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004943 480 TESKSMQAMCHAYAAVSYFCIG-DAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQ 558 (722)
Q Consensus 480 ~~~~~~~A~allnla~v~l~~G-~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~ 558 (722)
........+ ...|.+..+.| +++.++..++.....+... . ..+..++......|+.+.|+..|++|++
T Consensus 464 ~~~~~~~ly--i~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~---~------~~w~~y~~fe~~~~~~~~AR~lferal~ 532 (679)
T 4e6h_A 464 KKLVTPDIY--LENAYIEYHISKDTKTACKVLELGLKYFATD---G------EYINKYLDFLIYVNEESQVKSLFESSID 532 (679)
T ss_dssp GGGSCTHHH--HHHHHHHHTTTSCCHHHHHHHHHHHHHHTTC---H------HHHHHHHHHHHHHTCHHHHHHHHHHHTT
T ss_pred cCCCChHHH--HHHHHHHHHhCCCHHHHHHHHHHHHHHCCCc---h------HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 222112222 23344444444 4777777777665543321 1 2334455555677999999999999987
Q ss_pred HHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Q 004943 559 IAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAK 602 (722)
Q Consensus 559 la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAk 602 (722)
... +..-...............|+.+++.+..+.+....-
T Consensus 533 ~~~----~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 533 KIS----DSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp TSS----STTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred hcC----CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 622 1111223444455556677888888888887766554
No 214
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.23 E-value=0.61 Score=44.66 Aligned_cols=104 Identities=13% Similarity=0.004 Sum_probs=81.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH--hcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCh--
Q 004943 532 LHFAYGLLLMRQQDFQEARNRLAKGLQIAHN--HMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDI-- 607 (722)
Q Consensus 532 al~~lG~~~~~~G~~~eAk~~L~qAL~la~~--~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~-- 607 (722)
+++.-.......|-|+.|.....-++.+... ....+...+++++.+|..++..|++.+|...+++|+.+-+.+...
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4555555566889999999999999999753 233478899999999999999999999999999999999976422
Q ss_pred -----------------hHHHHHHHHHHHHHHHcCCchhHhHHHH
Q 004943 608 -----------------PTQIWALSVLTALYQQLGDRGNEMENDE 635 (722)
Q Consensus 608 -----------------~~q~~al~~L~~l~~~~Gd~~~A~e~~~ 635 (722)
..+.....-++.+|...|++..|...++
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le 146 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILD 146 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHh
Confidence 2234566778899999999988877443
No 215
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=93.60 E-value=1 Score=52.60 Aligned_cols=190 Identities=11% Similarity=-0.037 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhH
Q 004943 427 AQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAA-FHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES 505 (722)
Q Consensus 427 A~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al-~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~ 505 (722)
....|++|+..+-..|+ +...-+.+....|+.++|. ..|..|+...... .......+......|+.+.
T Consensus 328 v~~~Ye~aL~~~p~~~~--------lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s---~~Lwl~~a~~ee~~~~~e~ 396 (679)
T 4e6h_A 328 MTYVYMQAAQHVCFAPE--------IWFNMANYQGEKNTDSTVITKYLKLGQQCIPNS---AVLAFSLSEQYELNTKIPE 396 (679)
T ss_dssp HHHHHHHHHHHTTTCHH--------HHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHcCCCHH--------HHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHH
Confidence 34467777776544443 4666677777888888886 9998888755432 2233445666667788776
Q ss_pred HHHHHHHhcchhc-------c-ccccc-----ChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHH
Q 004943 506 SSQAIDLIGPVYQ-------M-KDTIN-----GVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQ 572 (722)
Q Consensus 506 a~~aL~l~~~l~r-------~-~~~~~-----~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~ 572 (722)
++..++.+..... . .+... ....-+..+..++....+.|..+.|+..|.+|++... ... ..
T Consensus 397 aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~-----~~ 470 (679)
T 4e6h_A 397 IETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVT-----PD 470 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSC-----TH
T ss_pred HHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCC-----hH
Confidence 6655554433210 0 00000 0000123455556666678899999999999976511 111 12
Q ss_pred HHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHH
Q 004943 573 YLTILGNLALALH-DTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRK 639 (722)
Q Consensus 573 ~L~~LG~~~~a~g-~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~ 639 (722)
+...-+.+.+..| +++.|+++++.++.... +.+ ..| ....+.....|+.++|+..|+.+..
T Consensus 471 lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p---~~~-~~w--~~y~~fe~~~~~~~~AR~lferal~ 532 (679)
T 4e6h_A 471 IYLENAYIEYHISKDTKTACKVLELGLKYFA---TDG-EYI--NKYLDFLIYVNEESQVKSLFESSID 532 (679)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT---TCH-HHH--HHHHHHHHHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC---Cch-HHH--HHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 2334455555554 58999999999998643 322 244 2334556677888888888887654
No 216
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=93.34 E-value=0.29 Score=46.31 Aligned_cols=88 Identities=11% Similarity=0.029 Sum_probs=64.1
Q ss_pred CHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcC
Q 004943 465 CYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQ 544 (722)
Q Consensus 465 ~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G 544 (722)
....+...|.+.+.. +. ....+..+.|+++.+..+++...++..++..+++..+ ......+++.+|..+.+.|
T Consensus 13 ~l~~~~~~y~~e~~~-~~--~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~----p~~~rd~lY~LAv~~~kl~ 85 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAA-GS--VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGS----KEEQRDYVFYLAVGNYRLK 85 (152)
T ss_dssp HHHHHHHHHHHHHHT-TC--CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSC----HHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcc-CC--CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC----ccchHHHHHHHHHHHHHcc
Confidence 345566667665542 11 2345668888999887777778888888777766431 1124568889999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 004943 545 DFQEARNRLAKGLQI 559 (722)
Q Consensus 545 ~~~eAk~~L~qAL~l 559 (722)
+|++|++++.++|++
T Consensus 86 ~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 86 EYEKALKYVRGLLQT 100 (152)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999999999
No 217
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=93.18 E-value=7.2 Score=41.28 Aligned_cols=170 Identities=13% Similarity=0.009 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcC
Q 004943 424 FVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGC--YSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIG 501 (722)
Q Consensus 424 ~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~--~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G 501 (722)
+.++++.+..++. ..|.- ..+.+.+|.+...+|. +++++..+..++..-.. -..|+.+-+.+....|
T Consensus 90 l~~EL~~~~~~L~---~~PKn-----y~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr---Ny~AW~~R~~vl~~l~ 158 (331)
T 3dss_A 90 VKAELGFLESCLR---VNPKS-----YGTWHHRCWLLSRLPEPNWARELELCARFLEADER---NFHCWDYRRFVAAQAA 158 (331)
T ss_dssp HHHHHHHHHHHHH---HCTTC-----HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH---hCCCC-----HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhC
Confidence 5566666666654 24543 4678999999999994 99999999888864322 1345566667766667
Q ss_pred Ch-hHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHHHHHhcCC
Q 004943 502 DA-ESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQ--------------QDFQEARNRLAKGLQIAHNHMGN 566 (722)
Q Consensus 502 ~~-e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~--------------G~~~eAk~~L~qAL~la~~~~gd 566 (722)
.+ ++ +++.+........++. .+++..|.+.... +.++++..++.+++.+. -+|
T Consensus 159 ~~~~e---el~~~~~~I~~~p~N~------SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~---P~d 226 (331)
T 3dss_A 159 VAPAE---ELAFTDSLITRNFSNY------SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD---PND 226 (331)
T ss_dssp CCHHH---HHHHHHHHHHHCSCCH------HHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS---TTC
T ss_pred cCHHH---HHHHHHHHHHHCCCCH------HHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC---CCC
Confidence 63 33 2222222212111111 3455555555444 45788888888888872 334
Q ss_pred hHHHHHHHHHHHHHHHhC-CC---hHHHHHHHHHHHHHHHHc----CChhHHHHHHHHHHHHHHH
Q 004943 567 LQLVSQYLTILGNLALAL-HD---TVQAREILRSSLTLAKKL----YDIPTQIWALSVLTALYQQ 623 (722)
Q Consensus 567 ~~l~a~~L~~LG~~~~a~-g~---~~qA~~~l~~Al~lAkki----~D~~~q~~al~~L~~l~~~ 623 (722)
. + +-+-+..++... |. ..+=.+++++++...+++ +|- .|++..+..+.+.
T Consensus 227 ~---S-aW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~---~w~l~~~~~~~~~ 284 (331)
T 3dss_A 227 Q---S-AWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN---KWCLLTIILLMRA 284 (331)
T ss_dssp H---H-HHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHH
T ss_pred H---H-HHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc---chHHHHHHHHHHh
Confidence 2 1 333333333333 21 112224444444444443 443 7887666655443
No 218
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=93.11 E-value=2.3 Score=48.34 Aligned_cols=138 Identities=7% Similarity=-0.100 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcC
Q 004943 424 FVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVG--CYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIG 501 (722)
Q Consensus 424 ~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG--~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G 501 (722)
+.+|++.+.++++ ..|.- ..+++.+|++...+| ++++|+..|..++..-.. -..|+.+-+.+....|
T Consensus 89 ~~~eL~~~~~~l~---~~pK~-----y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~---N~~aW~~R~~~l~~l~ 157 (567)
T 1dce_A 89 VKAELGFLESCLR---VNPKS-----YGTWHHRCWLLSRLPEPNWARELELCARFLEADER---NFHCWDYRRFVAAQAA 157 (567)
T ss_dssp HHHHHHHHHHHHH---HCTTC-----HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHH---hCCCC-----HHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc---cccHHHHHHHHHHHcC
Confidence 8888888888876 34553 367999999999999 779999999988876432 2566677778877777
Q ss_pred -ChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHHHHHhcCC
Q 004943 502 -DAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQ--------------QDFQEARNRLAKGLQIAHNHMGN 566 (722)
Q Consensus 502 -~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~--------------G~~~eAk~~L~qAL~la~~~~gd 566 (722)
.+++ +++-+........++ ..+++..|.+.... +.+++|..++.+|+.+. =.|
T Consensus 158 ~~~~~---el~~~~~~I~~~p~n------~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~---P~~ 225 (567)
T 1dce_A 158 VAPAE---ELAFTDSLITRNFSN------YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD---PND 225 (567)
T ss_dssp CCHHH---HHHHHHTTTTTTCCC------HHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC---SSC
T ss_pred CChHH---HHHHHHHHHHHCCCC------ccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC---CCC
Confidence 4443 333333322222111 14566666666553 55788999999998872 223
Q ss_pred hHHHHHHHHHHHHHHHhCCChH
Q 004943 567 LQLVSQYLTILGNLALALHDTV 588 (722)
Q Consensus 567 ~~l~a~~L~~LG~~~~a~g~~~ 588 (722)
..+.+.++.++...++++
T Consensus 226 ----~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 226 ----QSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp ----SHHHHHHHHHHSCCCCCS
T ss_pred ----ccHHHHHHHHHhcCCCcc
Confidence 136777888887766643
No 219
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.35 E-value=1.2 Score=42.52 Aligned_cols=116 Identities=14% Similarity=0.086 Sum_probs=75.3
Q ss_pred hcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC------------
Q 004943 499 CIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGN------------ 566 (722)
Q Consensus 499 ~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd------------ 566 (722)
..|-++.+.-..+++..+-....+......++.++..+|.+++.+|+|..|...|++||+..+ -+..
T Consensus 32 d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k-~l~k~~s~~~~~~~~s 110 (167)
T 3ffl_A 32 AAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKK-ALSKTSKVRPSTGNSA 110 (167)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-CC--------------
T ss_pred HhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH-HHhcCCCccccccccC
Confidence 335555443333333333222222233445888999999999999999999999999999954 2321
Q ss_pred -------hHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Q 004943 567 -------LQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQ 622 (722)
Q Consensus 567 -------~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~ 622 (722)
..-+..+..-++..|...+++++|...++ .|+-..--..+...||++|+
T Consensus 111 s~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le-------~Ip~k~Rt~kvnm~LakLy~ 166 (167)
T 3ffl_A 111 STPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILD-------GIPSRQRTPKINMLLANLYK 166 (167)
T ss_dssp ------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHH-------TSCGGGCCHHHHHHHHHHCC
T ss_pred CCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHh-------cCCchhcCHHHHHHHHHHhc
Confidence 12234677889999999999998887644 44443333455667777664
No 220
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=91.91 E-value=1.8 Score=48.45 Aligned_cols=165 Identities=9% Similarity=-0.067 Sum_probs=103.5
Q ss_pred HhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHH--------HhCCHHHHHHHHHHHHHhhcch
Q 004943 412 ENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAH--------SVGCYSEAAFHYVEAAKITESK 483 (722)
Q Consensus 412 e~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~--------alG~~~~Al~~f~~AL~l~~~~ 483 (722)
.++.-.++..|++++|.+.+.++.+-. --||.... ..++..|.. ..|.+++|...|.+-... + .
T Consensus 30 ~~~id~c~k~G~~~~A~~lf~~M~~~G-v~pd~~ty-----n~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~-G-~ 101 (501)
T 4g26_A 30 KQKLDMCSKKGDVLEALRLYDEARRNG-VQLSQYHY-----NVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD-K-V 101 (501)
T ss_dssp HHHHHHTTTSCCHHHHHHHHHHHHHHT-CCCCHHHH-----HHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT-T-C
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCHhHH-----HHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh-C-C
Confidence 445667789999999999999998731 13554211 111222211 123578999999654321 1 1
Q ss_pred hHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 004943 484 SMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNH 563 (722)
Q Consensus 484 ~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~ 563 (722)
..-..+.+.+-..|...|+.+.+.+.++..... +-.++. .+++.+=..+.+.|+.++|...+.+-.+
T Consensus 102 ~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~----g~~Pd~----~tyn~lI~~~~~~g~~~~A~~l~~~M~~----- 168 (501)
T 4g26_A 102 VPNEATFTNGARLAVAKDDPEMAFDMVKQMKAF----GIQPRL----RSYGPALFGFCRKGDADKAYEVDAHMVE----- 168 (501)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----TCCCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHH-----
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCcc----ceehHHHHHHHHCCCHHHHHHHHHHHHh-----
Confidence 112234455556677888888777777655432 111222 3455555666789999999999987643
Q ss_pred cCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 004943 564 MGNLQLVSQYLTILGNLALALHDTVQAREILRSSL 598 (722)
Q Consensus 564 ~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al 598 (722)
.|- .....+++.|=..+...|+.++|.+.++.=.
T Consensus 169 ~G~-~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr 202 (501)
T 4g26_A 169 SEV-VPEEPELAALLKVSMDTKNADKVYKTLQRLR 202 (501)
T ss_dssp TTC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCC-CCCHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 333 2233467777788999999999999887743
No 221
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=91.65 E-value=1.7 Score=49.53 Aligned_cols=179 Identities=7% Similarity=-0.065 Sum_probs=116.8
Q ss_pred HHHHHhhCCHH-HHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCC----------HHHHHHHHHHHHHhhcch
Q 004943 415 VAVELTRSGFV-EAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGC----------YSEAAFHYVEAAKITESK 483 (722)
Q Consensus 415 g~~~l~~g~~~-eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~----------~~~Al~~f~~AL~l~~~~ 483 (722)
.+.....|+++ +|++.+.+++.+ .|+- ..+++.+|.+...+|+ +++|+..|..++......
T Consensus 35 ~~~~~~~~~~~eeal~~~~~~l~~---nP~~-----~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~ 106 (567)
T 1dce_A 35 VFQKRQAGELDESVLELTSQILGA---NPDF-----ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS 106 (567)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHH---CTTC-----HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHH---Cchh-----HHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC
Confidence 44445566665 678888888775 4553 3668999999999998 999999999888654322
Q ss_pred hHHHHHHHHHHHHHHhcCCh--hHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHH
Q 004943 484 SMQAMCHAYAAVSYFCIGDA--ESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQ-DFQEARNRLAKGLQIA 560 (722)
Q Consensus 484 ~~~A~allnla~v~l~~G~~--e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G-~~~eAk~~L~qAL~la 560 (722)
..++.+-+++....|++ ++.-..++.+... ...+ .++++..|.+....| .++++..++.++++.
T Consensus 107 ---y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~--d~~N-------~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~- 173 (567)
T 1dce_A 107 ---YGTWHHRCWLLSRLPEPNWARELELCARFLEA--DERN-------FHCWDYRRFVAAQAAVAPAEELAFTDSLITR- 173 (567)
T ss_dssp ---HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH--CTTC-------HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT-
T ss_pred ---HHHHHHHHHHHHHcccccHHHHHHHHHHHHhh--cccc-------ccHHHHHHHHHHHcCCChHHHHHHHHHHHHH-
Confidence 34566677888888843 5433333333332 1111 257777788888889 899999999999876
Q ss_pred HHhcCChHHHHHHHHHHHHHHHhC--------------CChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCC
Q 004943 561 HNHMGNLQLVSQYLTILGNLALAL--------------HDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGD 626 (722)
Q Consensus 561 ~~~~gd~~l~a~~L~~LG~~~~a~--------------g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd 626 (722)
...| ..+.+..|.++... ++.++|.+.+..|+.+. ++ ...+|.+ ++-++...|+
T Consensus 174 --~p~n----~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~---P~-~~saW~y--~~~ll~~~~~ 241 (567)
T 1dce_A 174 --NFSN----YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD---PN-DQSAWFY--HRWLLGRAEP 241 (567)
T ss_dssp --TCCC----HHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC---SS-CSHHHHH--HHHHHSCCCC
T ss_pred --CCCC----ccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC---CC-CccHHHH--HHHHHhcCCC
Confidence 2444 24666777776664 34577777777777543 22 2235544 4555655554
No 222
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=91.62 E-value=1.8 Score=48.45 Aligned_cols=165 Identities=12% Similarity=-0.057 Sum_probs=100.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChh------HHHHHHHHhcchhcccccccCh
Q 004943 453 EMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAE------SSSQAIDLIGPVYQMKDTINGV 526 (722)
Q Consensus 453 ~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e------~a~~aL~l~~~l~r~~~~~~~~ 526 (722)
...+ ..+...|++++|+..|.+....--.+.... .+.+-.++...|... ...+|++++...... +-.++.
T Consensus 30 ~~~i-d~c~k~G~~~~A~~lf~~M~~~Gv~pd~~t--yn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~-G~~Pd~ 105 (501)
T 4g26_A 30 KQKL-DMCSKKGDVLEALRLYDEARRNGVQLSQYH--YNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD-KVVPNE 105 (501)
T ss_dssp HHHH-HHTTTSCCHHHHHHHHHHHHHHTCCCCHHH--HHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT-TCCCCH
T ss_pred HHHH-HHHHhCCCHHHHHHHHHHHHHcCCCCCHhH--HHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh-CCCCCH
Confidence 3344 344688999999999976553211111222 222212232323221 256666665544221 111222
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCC
Q 004943 527 REEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYD 606 (722)
Q Consensus 527 ~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D 606 (722)
.+++.+-..+.+.|++++|...+.+-.+ .|-.. ...+.+.|=..|...|+.++|.+.++.-. +.|-
T Consensus 106 ----~tyn~lI~~~~~~g~~~~A~~l~~~M~~-----~g~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~----~~G~ 171 (501)
T 4g26_A 106 ----ATFTNGARLAVAKDDPEMAFDMVKQMKA-----FGIQP-RLRSYGPALFGFCRKGDADKAYEVDAHMV----ESEV 171 (501)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHHHHH-----TTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HTTC
T ss_pred ----HHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCC-ccceehHHHHHHHHCCCHHHHHHHHHHHH----hcCC
Confidence 4566666777899999999999987533 33211 23456666677899999999999987743 2332
Q ss_pred hhHHHHHHHHHHHHHHHcCCchhHhHHHHH
Q 004943 607 IPTQIWALSVLTALYQQLGDRGNEMENDEY 636 (722)
Q Consensus 607 ~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~ 636 (722)
.+. ..++..|-..|...|+.++|.+.++.
T Consensus 172 ~Pd-~~ty~~Li~~~~~~g~~d~A~~ll~~ 200 (501)
T 4g26_A 172 VPE-EPELAALLKVSMDTKNADKVYKTLQR 200 (501)
T ss_dssp CCC-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCC-HHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 222 55778888999999999999885554
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=90.04 E-value=0.85 Score=38.89 Aligned_cols=62 Identities=15% Similarity=-0.059 Sum_probs=49.6
Q ss_pred hhHHHHHhhCC---HHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcc
Q 004943 413 NKVAVELTRSG---FVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES 482 (722)
Q Consensus 413 ~Lg~~~l~~g~---~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~ 482 (722)
.+|.+....++ .++|.+.+++++++ .|+ ......++|..+...|+|++|..+|+..+.....
T Consensus 11 ~~a~al~~~~~~~~~~~A~~~l~~AL~~---dp~-----~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 11 AKATTLYYLHKQAMTDEVSLLLEQALQL---EPY-----NEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp HHHHHHHHTTTTCCCHHHHHHHHHHHHH---CTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHH---CcC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35666666666 79999999999995 333 2456888999999999999999999988876554
No 224
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.85 E-value=2.8 Score=45.92 Aligned_cols=105 Identities=10% Similarity=0.026 Sum_probs=80.3
Q ss_pred HHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHHHH
Q 004943 351 VILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEA 430 (722)
Q Consensus 351 ~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~~ 430 (722)
+-++...|++++|.+.+.+...- ....| . .+-+.-++..++...++|..+...
T Consensus 138 a~~~~~~Gd~~~A~~~~~~~~~~----~~~~~---~--------------------kid~~l~~irl~l~~~d~~~~~~~ 190 (429)
T 4b4t_R 138 GEYYAQIGDKDNAEKTLGKSLSK----AISTG---A--------------------KIDVMLTIARLGFFYNDQLYVKEK 190 (429)
T ss_dssp HHHHHHHCCCTTHHHHHHHHHHH----HTCCC---S--------------------HHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh----cCChH---H--------------------HHHHHHHHHHHHHHhccHHHHHHH
Confidence 45566779999999999887655 32222 1 233334567788899999999999
Q ss_pred HHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchh
Q 004943 431 LVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS 484 (722)
Q Consensus 431 l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~ 484 (722)
+.++..++...||. .....+..-.|.++.+.++|..|..+|.++.......+
T Consensus 191 ~~ka~~~~~~~~d~--~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~~e 242 (429)
T 4b4t_R 191 LEAVNSMIEKGGDW--ERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTSIE 242 (429)
T ss_dssp HHHHHHHHTTCCCT--HHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCCSC
T ss_pred HHHHHHhhhcCCCH--HHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCCccc
Confidence 99999999988875 23456777889999999999999999998877655443
No 225
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.25 E-value=1.9 Score=47.28 Aligned_cols=107 Identities=16% Similarity=0.142 Sum_probs=70.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHH
Q 004943 492 YAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVS 571 (722)
Q Consensus 492 nla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a 571 (722)
.+|..|...||.+.+.+++..++..|...+ + +...++..-.++...+++..++.++.++..+.. ..||.....
T Consensus 136 ~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~--~----kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~-~~~d~~~~~ 208 (429)
T 4b4t_R 136 NLGEYYAQIGDKDNAEKTLGKSLSKAISTG--A----KIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIE-KGGDWERRN 208 (429)
T ss_dssp HHHHHHHHHCCCTTHHHHHHHHHHHHTCCC--S----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT-TCCCTHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCChH--H----HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhh-cCCCHHHHH
Confidence 334444444444444444444444433322 1 445566666677788888899999988888854 577777777
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcC
Q 004943 572 QYLTILGNLALALHDTVQAREILRSSLTLAKKLY 605 (722)
Q Consensus 572 ~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~ 605 (722)
.....-|.+++..+++.+|-..+..++......+
T Consensus 209 ~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~~e 242 (429)
T 4b4t_R 209 RYKTYYGIHCLAVRNFKEAAKLLVDSLATFTSIE 242 (429)
T ss_dssp HHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCCSC
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHhccCCccc
Confidence 7777778888888888888888888776554433
No 226
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=88.21 E-value=16 Score=42.01 Aligned_cols=28 Identities=14% Similarity=-0.014 Sum_probs=16.2
Q ss_pred HHHhCCChHHHHHHH------HHHHHHHHHcCCh
Q 004943 580 LALALHDTVQAREIL------RSSLTLAKKLYDI 607 (722)
Q Consensus 580 ~~~a~g~~~qA~~~l------~~Al~lAkki~D~ 607 (722)
.|+..|++++|.+++ ..|+.+|++.++.
T Consensus 745 ~~~~~g~~~~a~~~~~~~~~~~~A~~lA~~~~~~ 778 (814)
T 3mkq_A 745 AYWIAGDIQGAKDLLIKSQRFSEAAFLGSTYGLG 778 (814)
T ss_dssp HHHHHTCHHHHHHHHHHTTCHHHHHHHHHHTTCC
T ss_pred HHHHcCCHHHHHHHHHHcCChHHHHHHHHHhCCC
Confidence 344456666666655 3466666666543
No 227
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=87.01 E-value=16 Score=41.91 Aligned_cols=131 Identities=11% Similarity=-0.048 Sum_probs=72.0
Q ss_pred HHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 004943 418 ELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSY 497 (722)
Q Consensus 418 ~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~ 497 (722)
++..|++++|.+. .+...+. .....+|.++...|+++.|+..| ...++..+ +..+|
T Consensus 662 ~l~~~~~~~A~~~-------~~~~~~~------~~W~~la~~al~~~~~~~A~~~y----~~~~d~~~-------l~~l~ 717 (814)
T 3mkq_A 662 ALKVGQLTLARDL-------LTDESAE------MKWRALGDASLQRFNFKLAIEAF----TNAHDLES-------LFLLH 717 (814)
T ss_dssp HHHHTCHHHHHHH-------HTTCCCH------HHHHHHHHHHHHTTCHHHHHHHH----HHHTCHHH-------HHHHH
T ss_pred hhhcCCHHHHHHH-------HHhhCcH------hHHHHHHHHHHHcCCHHHHHHHH----HHccChhh-------hHHHH
Confidence 3455666665554 3444332 56888999999999999999999 44444332 23344
Q ss_pred HhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHH------HHHHHHHHhcCChH-HH
Q 004943 498 FCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLA------KGLQIAHNHMGNLQ-LV 570 (722)
Q Consensus 498 l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~------qAL~la~~~~gd~~-l~ 570 (722)
...|+.+......+..... +.. ..|. .++...|++++|.+.|. +|+.+|+ ..++.. ..
T Consensus 718 ~~~~~~~~~~~~~~~a~~~-------~~~-~~A~------~~~~~~g~~~~a~~~~~~~~~~~~A~~lA~-~~~~~~~~i 782 (814)
T 3mkq_A 718 SSFNNKEGLVTLAKDAETT-------GKF-NLAF------NAYWIAGDIQGAKDLLIKSQRFSEAAFLGS-TYGLGDNEV 782 (814)
T ss_dssp HHTTCHHHHHHHHHHHHHT-------TCH-HHHH------HHHHHHTCHHHHHHHHHHTTCHHHHHHHHH-HTTCCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHc-------Cch-HHHH------HHHHHcCCHHHHHHHHHHcCChHHHHHHHH-HhCCChHHH
Confidence 5567766544443332221 111 1222 22345788888887764 4667765 355533 13
Q ss_pred HHHHHHHHHHHHhCCCh
Q 004943 571 SQYLTILGNLALALHDT 587 (722)
Q Consensus 571 a~~L~~LG~~~~a~g~~ 587 (722)
..++...+.-....|+.
T Consensus 783 ~~~~~~~~~~L~~~~~~ 799 (814)
T 3mkq_A 783 NDIVTKWKENLILNGKN 799 (814)
T ss_dssp HHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHHhccch
Confidence 33444444444444443
No 228
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=86.35 E-value=9.5 Score=40.35 Aligned_cols=162 Identities=6% Similarity=-0.085 Sum_probs=100.2
Q ss_pred HhhHHHHHhhCCHH-HHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCC----------HHHHHHHHHHHHHhh
Q 004943 412 ENKVAVELTRSGFV-EAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGC----------YSEAAFHYVEAAKIT 480 (722)
Q Consensus 412 e~Lg~~~l~~g~~~-eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~----------~~~Al~~f~~AL~l~ 480 (722)
.+..+.....|+++ +|++.+..++.+ .|+- ..+.+..|.+...+|. +++++..+..++...
T Consensus 33 ~~~~~~~~~~~e~s~eaL~~t~~~L~~---nP~~-----ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~ 104 (331)
T 3dss_A 33 TQAVFQKRQAGELDESVLELTSQILGA---NPDF-----ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN 104 (331)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHTT---CTTC-----HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHH---Cchh-----HHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC
Confidence 34556666788888 788888887764 4553 3567778888877776 688888888777643
Q ss_pred cchhHHHHHHHHHHHHHHhcCC--hhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHH
Q 004943 481 ESKSMQAMCHAYAAVSYFCIGD--AESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQD-FQEARNRLAKGL 557 (722)
Q Consensus 481 ~~~~~~A~allnla~v~l~~G~--~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~-~~eAk~~L~qAL 557 (722)
... -.++.+-+.+....|+ .+.....++.+... .+.++ ++++.-|.+....|+ ++++..++.+++
T Consensus 105 PKn---y~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~--dprNy-------~AW~~R~~vl~~l~~~~~eel~~~~~~I 172 (331)
T 3dss_A 105 PKS---YGTWHHRCWLLSRLPEPNWARELELCARFLEA--DERNF-------HCWDYRRFVAAQAAVAPAEELAFTDSLI 172 (331)
T ss_dssp TTC---HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--CTTCH-------HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCC---HHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--CCCCH-------HHHHHHHHHHHHhCcCHHHHHHHHHHHH
Confidence 221 3344555666666664 33322233322222 12211 467777777778888 589999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHHhC--------------CChHHHHHHHHHHHHH
Q 004943 558 QIAHNHMGNLQLVSQYLTILGNLALAL--------------HDTVQAREILRSSLTL 600 (722)
Q Consensus 558 ~la~~~~gd~~l~a~~L~~LG~~~~a~--------------g~~~qA~~~l~~Al~l 600 (722)
+. ...|.. +.+..|.+.... +..+++.+.+..|+.+
T Consensus 173 ~~---~p~N~S----AW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~ 222 (331)
T 3dss_A 173 TR---NFSNYS----SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT 222 (331)
T ss_dssp HH---CSCCHH----HHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH
T ss_pred HH---CCCCHH----HHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh
Confidence 87 255532 445555555544 3355666666666653
No 229
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=86.26 E-value=2.5 Score=38.58 Aligned_cols=95 Identities=13% Similarity=0.029 Sum_probs=65.7
Q ss_pred CHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcC
Q 004943 465 CYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQ 544 (722)
Q Consensus 465 ~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G 544 (722)
....+...|..++.. +. ....+..+.|+.+.+-..+....+.+.++..+++..+ .-.+=.+++.+|..+.+.|
T Consensus 16 ~l~~~~~~y~~e~~~-~~--~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~----p~~~Rd~lY~LAvg~yklg 88 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAA-GS--VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS----KEEQRDYVFYLAVGNYRLK 88 (126)
T ss_dssp HHHHHHHHHHHHHHH-SC--CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC----HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcc-CC--CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC----cchHHHHHHHHHHHHHHhh
Confidence 344555556555432 11 2235567888888887777778888888888877531 1113356778888889999
Q ss_pred CHHHHHHHHHHHHHHHHHhcCChHH
Q 004943 545 DFQEARNRLAKGLQIAHNHMGNLQL 569 (722)
Q Consensus 545 ~~~eAk~~L~qAL~la~~~~gd~~l 569 (722)
+|.+|++++...|++ +=+|+|.
T Consensus 89 ~Y~~A~~~~~~lL~~---eP~n~QA 110 (126)
T 1nzn_A 89 EYEKALKYVRGLLQT---EPQNNQA 110 (126)
T ss_dssp CHHHHHHHHHHHHHH---CTTCHHH
T ss_pred hHHHHHHHHHHHHHh---CCCCHHH
Confidence 999999999999998 3556554
No 230
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.95 E-value=13 Score=41.74 Aligned_cols=215 Identities=17% Similarity=0.112 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHhhHHHHHhhCCHHHHHHHHHHHH--HHHHhCCc-hhhhhHHHHHHHHHHHHHHhCCHHHHH-------
Q 004943 401 GVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMK--NWFIRFPT-ILQACESMIEMLRGQYAHSVGCYSEAA------- 470 (722)
Q Consensus 401 ~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~~l~~Al--~l~~~~~d-~~~~~~a~i~~llG~~~~alG~~~~Al------- 470 (722)
.+|++|.+++ . ..-..++++|.++-.... +....+.. .+....+-++.-.+..+.-.|......
T Consensus 135 ~~y~~lL~~i-----~-L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~ 208 (523)
T 4b4t_S 135 NCFMHLLVQL-----F-LWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNI 208 (523)
T ss_dssp --------------------------------------------------------------------------CHHHHH
T ss_pred HHHHHHHHHH-----H-HhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchh
Confidence 3576655553 1 234678888888876655 33333221 222234445554555555555554422
Q ss_pred ---HHHHHHHHhh---cchhHHHHHHHHHHHHHHhcCChhHHHHHHHHhc-chhcccccccChHHHHHHHHHHHHHHHhc
Q 004943 471 ---FHYVEAAKIT---ESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIG-PVYQMKDTINGVREEASLHFAYGLLLMRQ 543 (722)
Q Consensus 471 ---~~f~~AL~l~---~~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~-~l~r~~~~~~~~~~~A~al~~lG~~~~~~ 543 (722)
..+..+++.+ .|..+.+..++.+-..|+.-+.++++...+.... |. +..+....+.+++-+|.++..+
T Consensus 209 ~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~-----~~~sn~q~~rY~YY~GRI~a~q 283 (523)
T 4b4t_S 209 ILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLEYPH-----TDVSSSLEARYFFYLSKINAIQ 283 (523)
T ss_dssp HHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCT-----TTSCHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCc-----ccCCHHHHHHHHHHHHHHHHHh
Confidence 2333344443 2445888888888889999888888877777653 21 1122234678999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHh---cCChHHHHHHHHHHHHHHH---------hCCChHHHHHHHHHHHHHHHHcCChhHHH
Q 004943 544 QDFQEARNRLAKGLQIAHNH---MGNLQLVSQYLTILGNLAL---------ALHDTVQAREILRSSLTLAKKLYDIPTQI 611 (722)
Q Consensus 544 G~~~eAk~~L~qAL~la~~~---~gd~~l~a~~L~~LG~~~~---------a~g~~~qA~~~l~~Al~lAkki~D~~~q~ 611 (722)
++|.+|.++|.+|++-+... .|+ ...+.-+..+-.+.. .+-..+.+..-+- .+.-|=+.||...-.
T Consensus 284 ~~Y~eA~~~L~~A~rkap~~~~a~gf-r~~a~K~lI~V~LLlG~iP~r~lf~q~~l~~~L~pY~-~Lv~Avr~GdL~~F~ 361 (523)
T 4b4t_S 284 LDYSTANEYIIAAIRKAPHNSKSLGF-LQQSNKLHCCIQLLMGDIPELSFFHQSNMQKSLLPYY-HLTKAVKLGDLKKFT 361 (523)
T ss_dssp TCHHHHHHHHHHHTSSCSCSSSCSHH-HHHHHHHHHHHHHHHTCCCCHHHHTTTSCHHHHHHHH-HHHHHHHHTCHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCcchhhhhH-HHHHHHHHHhHHhhcCCCCChHHhhchhHHHHHHHHH-HHHHHHHcCCHHHHH
Confidence 99999999999999864321 122 333332223322221 2222233332222 244444667765555
Q ss_pred HHHHHHHHHHHHcCCch
Q 004943 612 WALSVLTALYQQLGDRG 628 (722)
Q Consensus 612 ~al~~L~~l~~~~Gd~~ 628 (722)
.++..-...+...|.+.
T Consensus 362 ~~L~~h~~~F~~Dgty~ 378 (523)
T 4b4t_S 362 STITKYKQLLLKDDTYQ 378 (523)
T ss_dssp HHHHHTHHHHHHTTCTH
T ss_pred HHHHHhcceeccCChhH
Confidence 55555555555555443
No 231
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=85.45 E-value=3.7 Score=38.25 Aligned_cols=76 Identities=8% Similarity=0.084 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 004943 487 AMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGN 566 (722)
Q Consensus 487 A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd 566 (722)
..+..|.|+..++...++...+.+.++..+++.... . +=.+++-+|..+.+.|+|.+|+++....|++ +=+|
T Consensus 39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~---~--~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~---eP~n 110 (144)
T 1y8m_A 39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES---R--RRECLYYLTIGCYKLGEYSMAKRYVDTLFEH---ERNN 110 (144)
T ss_dssp HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCS---T--HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT---CCCC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcc---c--hhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---CCCc
Confidence 445577888888877777788888888888775432 1 3346777778889999999999999999998 4667
Q ss_pred hHHH
Q 004943 567 LQLV 570 (722)
Q Consensus 567 ~~l~ 570 (722)
+|..
T Consensus 111 ~QA~ 114 (144)
T 1y8m_A 111 KQVG 114 (144)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6553
No 232
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=84.80 E-value=3.3 Score=38.16 Aligned_cols=75 Identities=8% Similarity=0.100 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 004943 487 AMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGN 566 (722)
Q Consensus 487 A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd 566 (722)
..+..|.|+..++-.+++...++..++..+++.... . +-.+++-+|..+.+.|+|.+|+++....|++ +=+|
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~---~--~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~---eP~N 111 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES---R--RRECLYYLTIGCYKLGEYSMAKRYVDTLFEH---ERNN 111 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGG---G--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT---CTTC
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcc---h--hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh---CCCC
Confidence 456678888888877777788888888888775421 1 3356777777889999999999999999988 4566
Q ss_pred hHH
Q 004943 567 LQL 569 (722)
Q Consensus 567 ~~l 569 (722)
+|.
T Consensus 112 ~QA 114 (134)
T 3o48_A 112 KQV 114 (134)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 233
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=83.82 E-value=25 Score=37.35 Aligned_cols=173 Identities=11% Similarity=-0.065 Sum_probs=102.1
Q ss_pred CCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhc
Q 004943 422 SGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVG-CYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCI 500 (722)
Q Consensus 422 g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG-~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~ 500 (722)
....+|++.+.+++.+ .|+- ..+.+.+|.+...+| .+++++..+..++...... ..++++-+.+....
T Consensus 68 e~se~AL~lt~~~L~~---nP~~-----ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKn---y~aW~hR~wlL~~l 136 (349)
T 3q7a_A 68 EKSERALELTEIIVRM---NPAH-----YTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKS---YQVWHHRLLLLDRI 136 (349)
T ss_dssp CCSHHHHHHHHHHHHH---CTTC-----HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCC---HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh---Cchh-----HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHh
Confidence 3446788888888875 4443 367899999999999 5999999999888654332 23444445555554
Q ss_pred -C-ChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHHHHHhcCChHHH
Q 004943 501 -G-DAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQ--------EARNRLAKGLQIAHNHMGNLQLV 570 (722)
Q Consensus 501 -G-~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~--------eAk~~L~qAL~la~~~~gd~~l~ 570 (722)
+ +++.....++.+... ...++ ++++.-+-+....|+++ ++..++.++++. ...|
T Consensus 137 ~~~~~~~EL~~~~k~L~~--dpkNy-------~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~---dp~N---- 200 (349)
T 3q7a_A 137 SPQDPVSEIEYIHGSLLP--DPKNY-------HTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV---DGRN---- 200 (349)
T ss_dssp CCSCCHHHHHHHHHHTSS--CTTCH-------HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH---CTTC----
T ss_pred cCCChHHHHHHHHHHHHh--CCCCH-------HHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh---CCCC----
Confidence 5 554433333333222 12222 35555555555556665 788888888776 2444
Q ss_pred HHHHHHHHHHHHhCCC-------hHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCc
Q 004943 571 SQYLTILGNLALALHD-------TVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDR 627 (722)
Q Consensus 571 a~~L~~LG~~~~a~g~-------~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~ 627 (722)
-.+.+..|.+....+. .+++.+.+..++.+ .-+| .-+|. .+.-++...|..
T Consensus 201 ~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~--~P~n--~SaW~--Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 201 NSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL--IPHN--VSAWN--YLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH--CTTC--HHHHH--HHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh--CCCC--HHHHH--HHHHHHHhcCCC
Confidence 2366777777777776 35555555555442 1223 23453 334455555543
No 234
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=81.23 E-value=6.1 Score=37.17 Aligned_cols=65 Identities=22% Similarity=0.238 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q 004943 531 SLHFAYGLLLMRQQ---DFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTL 600 (722)
Q Consensus 531 ~al~~lG~~~~~~G---~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~l 600 (722)
.+.|.+|....+.+ +..++...|++.++.. ++.....++..||-.+...|+++.|+++++.++.+
T Consensus 33 ~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-----~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 33 STQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-----SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-----CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-----CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 56777888778877 5668999999988762 22233457888899999999999999999998875
No 235
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=78.39 E-value=43 Score=40.40 Aligned_cols=206 Identities=5% Similarity=-0.055 Sum_probs=122.7
Q ss_pred HHHHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhc------
Q 004943 408 MQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITE------ 481 (722)
Q Consensus 408 a~lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~------ 481 (722)
+-....+|.++. |+.++++..+..-+. ..........+-+.+.+|.++.+.++ ++.+.....+....
T Consensus 376 ~sA~aSLGlIh~--g~~~~gl~~L~~yL~---~~~s~~~~ik~GAllaLGli~ag~~~--~~~~lL~~~L~~~~~~~~~~ 448 (963)
T 4ady_A 376 FTATASLGVIHK--GNLLEGKKVMAPYLP---GSRASSRFIKGGSLYGLGLIYAGFGR--DTTDYLKNIIVENSGTSGDE 448 (963)
T ss_dssp HHHHHHHHHHTS--SCTTTHHHHHTTTST---TSCCSCHHHHHHHHHHHHHHTTTTTH--HHHHHHHHHHHHHSSCCSCH
T ss_pred HHHHHHhhhhcc--CchHHHHHHHHHhcc---ccCCCcHHHHHHHHHHHHHhcCCCcH--HHHHHHHHHHcCcccccccc
Confidence 344455676665 566666555332211 00011124567788999999887774 68888877665443
Q ss_pred -chhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 004943 482 -SKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 560 (722)
Q Consensus 482 -~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la 560 (722)
....+.-+.+.+|++|.-.|+.+-..... ++....+ . . ....+-+.+|.++.-.|+.+-....++.+.+-
T Consensus 449 ~~~~ir~gAaLGLGla~~GS~~eev~e~L~----~~L~dd~--~-~-~~~~AalALGli~vGTgn~~ai~~LL~~~~e~- 519 (963)
T 4ady_A 449 DVDVLLHGASLGIGLAAMGSANIEVYEALK----EVLYNDS--A-T-SGEAAALGMGLCMLGTGKPEAIHDMFTYSQET- 519 (963)
T ss_dssp HHHHHHHHHHHHHHHHSTTCCCHHHHHHHH----HHHHTCC--H-H-HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC-
T ss_pred ccHHHHHHHHHHHHHHhcCCCCHHHHHHHH----HHHhcCC--H-H-HHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc-
Confidence 12233345567888887666543333332 3222111 1 1 12356678999999999888777777766532
Q ss_pred HHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHH
Q 004943 561 HNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRK 639 (722)
Q Consensus 561 ~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~ 639 (722)
-+......+-..||-++ .|+.+++....+ ......|+..+-.+...++-.|..+|+...-...++....
T Consensus 520 ----~~e~vrR~aalgLGll~--~g~~e~~~~li~----~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 520 ----QHGNITRGLAVGLALIN--YGRQELADDLIT----KMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS 588 (963)
T ss_dssp ----SCHHHHHHHHHHHHHHT--TTCGGGGHHHHH----HHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred ----CcHHHHHHHHHHHHhhh--CCChHHHHHHHH----HHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc
Confidence 12233333445566554 467766665543 4456789988888888999999999987766656655543
No 236
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=77.50 E-value=22 Score=38.05 Aligned_cols=100 Identities=13% Similarity=0.094 Sum_probs=64.4
Q ss_pred HHHHHhCCHHHHHHHHHHHHHhhcchh-------------------HHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhc
Q 004943 458 QYAHSVGCYSEAAFHYVEAAKITESKS-------------------MQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQ 518 (722)
Q Consensus 458 ~~~~alG~~~~Al~~f~~AL~l~~~~~-------------------~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r 518 (722)
.-....|+.++|.+.+.+|+.+.+... ....+...++..++..|+++.+...+..+...
T Consensus 123 ~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~-- 200 (388)
T 2ff4_A 123 VHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE-- 200 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence 333456788888888888887764321 11234445566778888887754444433222
Q ss_pred ccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 004943 519 MKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGN 566 (722)
Q Consensus 519 ~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd 566 (722)
.+.++.++.... .++.+.|+..+|.+.|++.-+.-.+++|-
T Consensus 201 -----~P~~E~~~~~lm--~al~~~Gr~~~Al~~y~~~r~~L~~eLG~ 241 (388)
T 2ff4_A 201 -----HPYREPLWTQLI--TAYYLSDRQSDALGAYRRVKTTLADDLGI 241 (388)
T ss_dssp -----STTCHHHHHHHH--HHHHTTTCHHHHHHHHHHHHHHHHHHHSC
T ss_pred -----CCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Confidence 223345555544 44578999999999999998876667775
No 237
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=73.73 E-value=18 Score=34.06 Aligned_cols=99 Identities=16% Similarity=0.105 Sum_probs=68.7
Q ss_pred HHHHHhHHHHHhhccH------hHHhHHHHHHhccCCCCChH------HHHHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 004943 6 EGLWGLADYHENKGEI------GKAVKCLEAICQSHVSFLPI------IEVKTRLRISTLLLKHTHNVNHAKSHLERSQL 73 (722)
Q Consensus 6 ~~L~~lAe~~~~~~~i------~~ai~CLeA~l~~~~~l~p~------~EA~~rLrla~iL~e~T~N~~~A~thLeka~~ 73 (722)
+.-|-...-+++.+++ ..-+.|++-++. +. ||. -=+..=+||| +|++..|.++|+..+..+..
T Consensus 14 d~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia-~~--Pp~k~~~wrrYI~LWIrYA--~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 14 EDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE-AL--PPDKYGQNESFARIQVRFA--ELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp HHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH-HS--CGGGGTTCHHHHHHHHHHH--HHHHHHCGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH-cC--CccccccHHHHHHHHHHHH--HHHHhcCHHHHHHHHHHHHH
Confidence 3445555556666666 777889998885 33 564 3345557777 45788999999999999987
Q ss_pred HHhcCCcchhhhhhhhHHHHHHHHHcCCCchHHHHHHHHHHHh
Q 004943 74 LLKAIPSCFELKCRTFSLLSQCYHLVGAIPPQKLILYKALDLT 116 (722)
Q Consensus 74 l~~~~~~~~dlk~~~~~lLa~~y~~~~~~~~~k~~l~k~i~~~ 116 (722)
++| .| -| .+-+.|+.-...|....++++|.+||...
T Consensus 89 ~hK---kF--AK--iwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 89 NCK---KF--AF--VHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCT---TB--HH--HHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HhH---HH--HH--HHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 633 34 22 23446777777787888899999999754
No 238
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=73.62 E-value=1e+02 Score=33.84 Aligned_cols=182 Identities=9% Similarity=0.003 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCChh
Q 004943 425 VEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAE 504 (722)
Q Consensus 425 ~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v~l~~G~~e 504 (722)
......|++++..+... +.+...-+.+....|+.+.|...|..|+.. ......-+ +.... .+.+
T Consensus 196 ~Rv~~~ye~al~~~p~~--------~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~-----~y~~~--~e~~ 259 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYA--------EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSL-----YYGLV--MDEE 259 (493)
T ss_dssp HHHHHHHHHHHHHTTTC--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHH-----HHHHH--TTCT
T ss_pred HHHHHHHHHHHHcCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHH-----HHHhh--cchh
Confidence 34566777877755322 455777788888999999999999999988 33221111 11111 1111
Q ss_pred H-HHHHHHHhcchhcc-cccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 004943 505 S-SSQAIDLIGPVYQM-KDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLAL 582 (722)
Q Consensus 505 ~-a~~aL~l~~~l~r~-~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~ 582 (722)
+ .....+.. ..+.. .+.......-...+...+....+.|.++.|+..|.+| +. -+ ....+....+.+.+
T Consensus 260 ~~~~~l~~~~-~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~----~~---~~~~v~i~~A~lE~ 330 (493)
T 2uy1_A 260 AVYGDLKRKY-SMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN----EG---VGPHVFIYCAFIEY 330 (493)
T ss_dssp HHHHHHHHHT-C----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT----SC---CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC----CC---CChHHHHHHHHHHH
Confidence 1 12211111 00000 0000000001234455555555788899999999999 32 11 11223333344444
Q ss_pred hCC-ChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHH
Q 004943 583 ALH-DTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYR 637 (722)
Q Consensus 583 a~g-~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~ 637 (722)
..| +.+.|++.++.|+... ++.+. .|.. ..+.....|+.++|+..|+..
T Consensus 331 ~~~~d~~~ar~ife~al~~~---~~~~~-~~~~--yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 331 YATGSRATPYNIFSSGLLKH---PDSTL-LKEE--FFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHCCSHHHHHHHHHHHHHC---TTCHH-HHHH--HHHHHHHHTCHHHHHHHHHHS
T ss_pred HHCCChHHHHHHHHHHHHHC---CCCHH-HHHH--HHHHHHHcCCHHHHHHHHHHH
Confidence 444 6999999999999854 44333 3433 345667789988888877765
No 239
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=67.17 E-value=38 Score=31.92 Aligned_cols=84 Identities=10% Similarity=-0.006 Sum_probs=60.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 004943 395 SAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYV 474 (722)
Q Consensus 395 ~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~ 474 (722)
...|++=+|+-+.-..+ ...+|.++|.+.|..|+.+++.+ +.++..-+.+-.+.|+.+.|.....
T Consensus 54 ~~~wrrYI~LWIrYA~~-------~ei~D~d~aR~vy~~a~~~hKkF--------AKiwi~~AqFEiRqgnl~kARkILg 118 (161)
T 4h7y_A 54 YGQNESFARIQVRFAEL-------KAIQEPDDARDYFQMARANCKKF--------AFVHISFAQFELSQGNVKKSKQLLQ 118 (161)
T ss_dssp GTTCHHHHHHHHHHHHH-------HHHHCGGGCHHHHHHHHHHCTTB--------HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHH-------HHhcCHHHHHHHHHHHHHHhHHH--------HHHHHHHHHHHHHcccHHHHHHHHH
Confidence 45775555544444433 22389999999999999973332 6889999999999999999999999
Q ss_pred HHHHhhcc-hhHHHHHHHHH
Q 004943 475 EAAKITES-KSMQAMCHAYA 493 (722)
Q Consensus 475 ~AL~l~~~-~~~~A~allnl 493 (722)
.|+..... ......|+.|+
T Consensus 119 ~AiG~~~k~~~~le~a~~nl 138 (161)
T 4h7y_A 119 KAVERGAVPLEMLEIALRNL 138 (161)
T ss_dssp HHHHTTCBCHHHHHHHHHHH
T ss_pred HHhccCCCcHHHHHHHHHhh
Confidence 99876543 33444554443
No 240
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=66.42 E-value=1.3e+02 Score=31.37 Aligned_cols=90 Identities=8% Similarity=-0.010 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHhCCChHHHHHHHHH-----HH-------HHHHHc--CChhHHH-H-
Q 004943 550 RNRLAKGLQIAHNHMGN-LQLVSQYLTILGNLALALHDTVQAREILRS-----SL-------TLAKKL--YDIPTQI-W- 612 (722)
Q Consensus 550 k~~L~qAL~la~~~~gd-~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~-----Al-------~lAkki--~D~~~q~-~- 612 (722)
+.++.+|++.+.+ .|+ ..+.......+|..++..|++.+|+.++-- +- ++.++. +++...- .
T Consensus 113 ~~fi~~ai~WS~~-~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~ 191 (312)
T 2wpv_A 113 KDVITGMNNWSIK-FSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFF 191 (312)
T ss_dssp HHHHHHHHHHHHH-TSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhh-cCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHH
Confidence 7888999999875 544 677778888999999999999999998852 22 223332 3332211 1
Q ss_pred HHHHHHHHHHHcCCchhHhHHHHHHHHHHH
Q 004943 613 ALSVLTALYQQLGDRGNEMENDEYRRKKLD 642 (722)
Q Consensus 613 al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~ 642 (722)
+...| -|...|+...|...++.+.+...
T Consensus 192 ~RaVL--~yL~l~n~~~A~~~~~~f~~~~~ 219 (312)
T 2wpv_A 192 SRLVF--NYLFISNISFAHESKDIFLERFI 219 (312)
T ss_dssp HHHHH--HHHHTTBHHHHHHHHHHHHHHHH
T ss_pred HHHHH--HHHHhcCHHHHHHHHHHHHHHHh
Confidence 11111 35567778888777776666553
No 241
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=65.92 E-value=25 Score=37.67 Aligned_cols=96 Identities=10% Similarity=-0.020 Sum_probs=64.0
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHhc-----CChHHHH----------HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcC
Q 004943 541 MRQQDFQEARNRLAKGLQIAHNHM-----GNLQLVS----------QYLTILGNLALALHDTVQAREILRSSLTLAKKLY 605 (722)
Q Consensus 541 ~~~G~~~eAk~~L~qAL~la~~~~-----gd~~l~a----------~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~ 605 (722)
...|++.+|...|++||.+.+... +..+... .++..+...+++.|++++|...++..+..
T Consensus 126 ~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~----- 200 (388)
T 2ff4_A 126 AAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE----- 200 (388)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred HhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----
Confidence 346777777777777777643211 0111111 34556778899999999999888877543
Q ss_pred ChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHHHHH
Q 004943 606 DIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLD 642 (722)
Q Consensus 606 D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~ 642 (722)
|+.- -.....|-.++...|+..+|.+.|+...+...
T Consensus 201 ~P~~-E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~ 236 (388)
T 2ff4_A 201 HPYR-EPLWTQLITAYYLSDRQSDALGAYRRVKTTLA 236 (388)
T ss_dssp STTC-HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 2222 22445555678899999999999998887654
No 242
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=64.97 E-value=99 Score=29.55 Aligned_cols=102 Identities=18% Similarity=0.111 Sum_probs=65.3
Q ss_pred HHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 004943 417 VELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVS 496 (722)
Q Consensus 417 ~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnla~v 496 (722)
+.+.-|+++.|.+..++. .+ ...+..+|..+...|+++-|+..| ..+++.+ .+-.+
T Consensus 14 LAL~lg~l~~A~e~a~~l-------~~------~~~Wk~Lg~~AL~~gn~~lAe~cy----~~~~D~~-------~L~~L 69 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL-------ND------SITWERLIQEALAQGNASLAEMIY----QTQHSFD-------KLSFL 69 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH-------CC------HHHHHHHHHHHHHTTCHHHHHHHH----HHTTCHH-------HHHHH
T ss_pred HHHhcCCHHHHHHHHHHh-------CC------HHHHHHHHHHHHHcCChHHHHHHH----HHhCCHH-------HHHHH
Confidence 455677888777764332 22 356899999999999999999999 5555543 23455
Q ss_pred HHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004943 497 YFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKG 556 (722)
Q Consensus 497 ~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qA 556 (722)
|...|+.+......++...- ++ ++.-...++.+|+++++.+.|.++
T Consensus 70 y~~tg~~e~L~kla~iA~~~-------g~-------~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 70 YLVTGDVNKLSKMQNIAQTR-------ED-------FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHTCHHHHHHHHHHHHHT-------TC-------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHHC-------cc-------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 66678876655444333221 11 122223345789999998877544
No 243
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=60.89 E-value=51 Score=35.35 Aligned_cols=67 Identities=10% Similarity=0.046 Sum_probs=58.1
Q ss_pred hHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh
Q 004943 414 KVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKIT 480 (722)
Q Consensus 414 Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~ 480 (722)
++..++..|+.++|...++++-..+...++......+..+...|.|+...++|.++-.++-..+...
T Consensus 133 i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~ 199 (393)
T 4b4t_O 133 IARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTL 199 (393)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Confidence 5888999999999999999999999998775445667888899999999999999988888877644
No 244
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.81 E-value=2.2e+02 Score=31.84 Aligned_cols=226 Identities=13% Similarity=-0.032 Sum_probs=92.4
Q ss_pred cCcchhHHHHHHHHHHhhccCCChHHHHHHHHHHH--HHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhh
Q 004943 337 LPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGM--QTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENK 414 (722)
Q Consensus 337 Lpk~~l~aLvylls~~~~~~kg~~~kA~k~~~~AL--~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~L 414 (722)
+|+- -+.++++..+++.-.+.++++.++-.... ..+...-++.-|.- .+++| ...
T Consensus 131 ~pE~--~~y~~lL~~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l-------------~ak~~--------fY~ 187 (523)
T 4b4t_S 131 TAEI--NCFMHLLVQLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLI-------------NAKLW--------FYI 187 (523)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChHH--HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHH-------------HHHHH--------HHH
Confidence 4544 46678888888888888888888776554 23222111111111 11222 334
Q ss_pred HHHHHhhCCHHHHH-------HHHHHHHHHHHhC---CchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-h-cc
Q 004943 415 VAVELTRSGFVEAQ-------EALVQMKNWFIRF---PTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKI-T-ES 482 (722)
Q Consensus 415 g~~~l~~g~~~eA~-------~~l~~Al~l~~~~---~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l-~-~~ 482 (722)
+.++-..|+..+.. ..-...+..++.. .|. ...+.+++++=..+...+.|++|..+...+.-. . .+
T Consensus 188 s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~--~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~s 265 (523)
T 4b4t_S 188 YLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDN--ETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVS 265 (523)
T ss_dssp ---------------CHHHHHHHHTHHHHHHHHCCSCSSS--CHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSC
T ss_pred HHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCc--chhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCC
Confidence 44454555544422 2222344455542 222 346788899889999999999999999765311 1 12
Q ss_pred hhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHH-----------HHH
Q 004943 483 KSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQE-----------ARN 551 (722)
Q Consensus 483 ~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~e-----------Ak~ 551 (722)
....+.=..++|.++.-++++.++.+.|..+-..|-......+.+..+.-+.+...+. .|+..+ +..
T Consensus 266 n~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~gfr~~a~K~lI~V~LL--lG~iP~r~lf~q~~l~~~L~ 343 (523)
T 4b4t_S 266 SSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLGFLQQSNKLHCCIQLL--MGDIPELSFFHQSNMQKSLL 343 (523)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSHHHHHHHHHHHHHHHH--HTCCCCHHHHTTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhhHHHHHHHHHHhHHhh--cCCCCChHHhhchhHHHHHH
Confidence 2344555677899999999998888887765443322211122323444444443332 465432 211
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHH
Q 004943 552 RLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAR 591 (722)
Q Consensus 552 ~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~ 591 (722)
-|-. |.-|- ..||-.....++..-...+.+.|.+.-.+
T Consensus 344 pY~~-Lv~Av-r~GdL~~F~~~L~~h~~~F~~Dgty~LI~ 381 (523)
T 4b4t_S 344 PYYH-LTKAV-KLGDLKKFTSTITKYKQLLLKDDTYQLCV 381 (523)
T ss_dssp HHHH-HHHHH-HHTCHHHHHHHHHHTHHHHHHTTCTHHHH
T ss_pred HHHH-HHHHH-HcCCHHHHHHHHHHhcceeccCChhHHHH
Confidence 1221 22233 47887777777777778888888776544
No 245
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=57.19 E-value=26 Score=39.14 Aligned_cols=62 Identities=15% Similarity=0.044 Sum_probs=53.6
Q ss_pred HHHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004943 409 QFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAK 478 (722)
Q Consensus 409 ~lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~ 478 (722)
..|.+||-+.+.++.+..|...|.+|..+. |+. +..++.+|.++...|+.-+|+-+|..++-
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~---P~~-----G~~~nqLavla~~~~~~l~a~y~y~rsl~ 214 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLV---PSN-----GQPYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTB-----SHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhC---CCC-----CchHHHHHHHHhcccccHHHHHHHHHHHh
Confidence 466789999999999999999999999974 332 35699999999999999999999987774
No 246
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=51.04 E-value=62 Score=31.00 Aligned_cols=62 Identities=6% Similarity=-0.169 Sum_probs=38.3
Q ss_pred HhhHHHHHhhCCHHHHHHHHHHHHHHHH------hCCchhh-hhHHH------HHHHHHHHHHHhCCHHHHHHHH
Q 004943 412 ENKVAVELTRSGFVEAQEALVQMKNWFI------RFPTILQ-ACESM------IEMLRGQYAHSVGCYSEAAFHY 473 (722)
Q Consensus 412 e~Lg~~~l~~g~~~eA~~~l~~Al~l~~------~~~d~~~-~~~a~------i~~llG~~~~alG~~~~Al~~f 473 (722)
..+|-..+.+|++.-|.++|.++-++-. ..||... .-.+. -.+....++..+|+++++...|
T Consensus 38 k~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~iA~~~g~~n~af~~~l~lGdv~~~i~lL 112 (177)
T 3mkq_B 38 ERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIAQTREDFGSMLLNTFYNNSTKERSSIF 112 (177)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHHHCccHHHHHHHHHHcCCHHHHHHHH
Confidence 4579999999999999999887765322 2333110 00011 1345566666777777777766
No 247
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=49.51 E-value=4.2e+02 Score=31.95 Aligned_cols=184 Identities=11% Similarity=0.007 Sum_probs=100.6
Q ss_pred HhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHH
Q 004943 412 ENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHA 491 (722)
Q Consensus 412 e~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~all 491 (722)
..||.++...++- ++.+.+...+. ..... ....+-..+|.+..+.|+-+....+.+.+.....+ ..+-.+..
T Consensus 459 LGLGla~~GS~~e-ev~e~L~~~L~---dd~~~---~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e-~vrR~aal 530 (963)
T 4ady_A 459 LGIGLAAMGSANI-EVYEALKEVLY---NDSAT---SGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHG-NITRGLAV 530 (963)
T ss_dssp HHHHHHSTTCCCH-HHHHHHHHHHH---TCCHH---HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCH-HHHHHHHH
T ss_pred HHHHHHhcCCCCH-HHHHHHHHHHh---cCCHH---HHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcH-HHHHHHHH
Confidence 3677777777764 34444444332 22222 12355667899999999988887777655542222 22223334
Q ss_pred HHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHH
Q 004943 492 YAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVS 571 (722)
Q Consensus 492 nla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a 571 (722)
.+|.+ ..|+.+.+...++.+... .+...+-.+-+.+|..|.-+|+...-...|+.+..- .+.....
T Consensus 531 gLGll--~~g~~e~~~~li~~L~~~-------~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-----~~d~VRr 596 (963)
T 4ady_A 531 GLALI--NYGRQELADDLITKMLAS-------DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-----SNDDVRR 596 (963)
T ss_dssp HHHHH--TTTCGGGGHHHHHHHHHC-------SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-----SCHHHHH
T ss_pred HHHhh--hCCChHHHHHHHHHHHhC-------CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-----CcHHHHH
Confidence 44544 556777666666554432 112235556778888888999977777677776532 1212223
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH
Q 004943 572 QYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQ 623 (722)
Q Consensus 572 ~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~ 623 (722)
.+...||.+.. |+++. ..+-+....+.+|+..+-.+-..||.+...
T Consensus 597 aAViaLGlI~~--g~~e~----v~rlv~~L~~~~d~~VR~gAalALGli~aG 642 (963)
T 4ady_A 597 AAVIALGFVLL--RDYTT----VPRIVQLLSKSHNAHVRCGTAFALGIACAG 642 (963)
T ss_dssp HHHHHHHHHTS--SSCSS----HHHHTTTGGGCSCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHhhcc--CCHHH----HHHHHHHHHhcCCHHHHHHHHHHHHHhccC
Confidence 45555665433 33322 222223333455666555555555555433
No 248
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=47.65 E-value=2.7e+02 Score=29.25 Aligned_cols=91 Identities=13% Similarity=0.080 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHhCCChHHHHHHHHH----H--------HHHHHHcCChhHHHHHH-H
Q 004943 550 RNRLAKGLQIAHNHMG-NLQLVSQYLTILGNLALALHDTVQAREILRS----S--------LTLAKKLYDIPTQIWAL-S 615 (722)
Q Consensus 550 k~~L~qAL~la~~~~g-d~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~----A--------l~lAkki~D~~~q~~al-~ 615 (722)
+.++.+|++.+.+ .| ...+.......+|.+|+..+++.+|+.++-- + .++.++-+....-+.+. .
T Consensus 115 ~~fi~~ai~WS~~-~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~dlfiaRa 193 (336)
T 3lpz_A 115 KRFVKEMIDWSKK-FGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTAPLYCARA 193 (336)
T ss_dssp HHHHHHHHHHHHH-HSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHhh-cCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 6688999999875 44 3566666777899999999999999988731 1 11222222111112222 2
Q ss_pred HHHHHHHHcCCchhHhHHHHHHHHHHHH
Q 004943 616 VLTALYQQLGDRGNEMENDEYRRKKLDE 643 (722)
Q Consensus 616 ~L~~l~~~~Gd~~~A~e~~~~~~~~~~~ 643 (722)
.| -|...|+...|...+..+.+...+
T Consensus 194 VL--~yL~l~n~~~A~~~~~~f~~~l~~ 219 (336)
T 3lpz_A 194 VL--PYLLVANVRAANTAYRIFTSALVE 219 (336)
T ss_dssp HH--HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HH--HHHHhCCHHHHHHHHHHHHHHHhh
Confidence 22 356777888888877777766544
No 249
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=46.22 E-value=1.4e+02 Score=32.03 Aligned_cols=80 Identities=13% Similarity=0.074 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCch
Q 004943 549 ARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRG 628 (722)
Q Consensus 549 Ak~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~ 628 (722)
+...|.+|+..++...+|++. .=.+.+|--+.+.+++.+|...+-.|-+..++-+-- .+
T Consensus 276 ~l~L~~~AI~sa~~yY~n~Hv--YPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~-------------------re 334 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHI--YPYTYLGGYYYRKKKYYEAIASWVDAGYVAGKYNYS-------------------KD 334 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCS--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCC-------------------GG
T ss_pred HHHHHHHHHHHHHHHhccCCc--cchhhhhhhhhhcchHHHHHHHHHHHHHHHHHcCCC-------------------cc
Confidence 788899999999999999887 667788899999999999999988887766554321 11
Q ss_pred hHhHHHHHHHHHHHHHhHHHHH
Q 004943 629 NEMENDEYRRKKLDELQKRLAD 650 (722)
Q Consensus 629 ~A~e~~~~~~~~~~~l~~~~~~ 650 (722)
. .|.|.....++-++.+....
T Consensus 335 D-eEIYKEf~eIAneliP~~~k 355 (472)
T 3re2_A 335 D-EEMYKEFHEIANDLIPNILK 355 (472)
T ss_dssp G-HHHHHHHHHHHHTHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHhhHHHH
Confidence 1 25555666666666666555
No 250
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=43.12 E-value=2.6e+02 Score=27.80 Aligned_cols=76 Identities=11% Similarity=-0.001 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Q 004943 529 EASLHFAYGLLLM---RQQDFQEARNRLAKGLQIAHNHMGN--LQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKK 603 (722)
Q Consensus 529 ~A~al~~lG~~~~---~~G~~~eAk~~L~qAL~la~~~~gd--~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkk 603 (722)
++.++.-++.+.. +..-.+.|...|++|+++|...+.. +.-.+.+||.=-=.|--.+++++|..++++|++-|-.
T Consensus 126 KGDyyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~Ai~ 205 (234)
T 2br9_A 126 KGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIA 205 (234)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 4555555555321 1122356899999999999765655 4445555555333344589999999999999987755
Q ss_pred c
Q 004943 604 L 604 (722)
Q Consensus 604 i 604 (722)
-
T Consensus 206 e 206 (234)
T 2br9_A 206 E 206 (234)
T ss_dssp T
T ss_pred h
Confidence 4
No 251
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=37.56 E-value=1.9e+02 Score=31.54 Aligned_cols=54 Identities=11% Similarity=0.071 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHc
Q 004943 549 ARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKL 604 (722)
Q Consensus 549 Ak~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki 604 (722)
+...|.+|+..++...+|++. .=++-+|--+.+.+++.+|...+-.|-+..++-
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~Hv--YPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~Y 351 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEHI--YPYMYLAGYHCRNRNVREALQAWADTATVIQDY 351 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCCS--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHhccCCc--cceeecchhhhhcchHHHHHHHHHHHHHHHHHc
Confidence 788899999999998999887 667788899999999999999888877766554
No 252
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=36.50 E-value=2.5e+02 Score=29.51 Aligned_cols=103 Identities=11% Similarity=0.023 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChH-HHHHHHHHHHHHHHHcCC-hhH
Q 004943 532 LHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTV-QAREILRSSLTLAKKLYD-IPT 609 (722)
Q Consensus 532 al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~-qA~~~l~~Al~lAkki~D-~~~ 609 (722)
.++.-+......|.+.-|-+..---++...+ -+- ......+..|..++......+ .=.+..+.|+.|.++.++ +.+
T Consensus 57 LL~~GA~~ll~~~Q~~sg~DL~~llvevy~~-~~~-~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~G 134 (336)
T 3lpz_A 57 ILASVSQTLLRSGQGGSGGDLAVLLVDTFRQ-AGQ-RVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAG 134 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HTC-CCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTC
T ss_pred HHHHHHHHHHHCCCcchHHHHHHHHHHHHHH-cCC-CCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCC
Confidence 3333444444555565555554433333321 111 111234444545444443222 224788899999998642 333
Q ss_pred HHHHHHHHHHHHHHcCCchhHhHHHHH
Q 004943 610 QIWALSVLTALYQQLGDRGNEMENDEY 636 (722)
Q Consensus 610 q~~al~~L~~l~~~~Gd~~~A~e~~~~ 636 (722)
--.-+..+|..|...|++.+|..+|-.
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~il 161 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHLVL 161 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHh
Confidence 345667889999999999888877743
No 253
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=35.40 E-value=55 Score=30.91 Aligned_cols=74 Identities=14% Similarity=0.097 Sum_probs=55.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc--CChHHHHHHH-HHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCh
Q 004943 533 HFAYGLLLMRQQDFQEARNRLAKGLQIAHNHM--GNLQLVSQYL-TILGNLALALHDTVQAREILRSSLTLAKKLYDI 607 (722)
Q Consensus 533 l~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~--gd~~l~a~~L-~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~ 607 (722)
-+.-|..++..|+|=+|-+.|+..=+-... - -.....+.+. ..-|-.++..|+...|..+++.|+...++.+..
T Consensus 35 ~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~-~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~~~~~ 111 (161)
T 2ijq_A 35 AVVHGVRLYNSGEFHESHDCFEDEWYNYGR-GNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGVPND 111 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTTTCS-SSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCc
Confidence 355677778889999999999988665211 1 0134556666 667778888999999999999999988777653
No 254
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=34.63 E-value=24 Score=29.28 Aligned_cols=37 Identities=16% Similarity=0.159 Sum_probs=30.8
Q ss_pred hccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHH
Q 004943 354 GRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIW 398 (722)
Q Consensus 354 ~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w 398 (722)
+...|+||.|..||+-++..|++.+..++|+.. +..|
T Consensus 22 ~Al~GnYdta~~yY~g~~~qI~k~l~~~~d~~~--------r~kW 58 (78)
T 2rpa_A 22 YALLGNYDSAMVYYQGVLDQMNKYLYSVKDTHL--------RQKW 58 (78)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHHHHHTCSCHHH--------HHHH
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHhcCCHHH--------HHhH
Confidence 344589999999999999999999998886544 6677
No 255
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=34.35 E-value=78 Score=29.87 Aligned_cols=67 Identities=7% Similarity=-0.080 Sum_probs=50.7
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHhhc
Q 004943 415 VAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIE-MLRGQYAHSVGCYSEAAFHYVEAAKITE 481 (722)
Q Consensus 415 g~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~-~llG~~~~alG~~~~Al~~f~~AL~l~~ 481 (722)
+...+..|+|=+|-+.++....-...-.+--....+++. ...|.++...|+...|..+|.+|+....
T Consensus 39 ~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~ 106 (161)
T 2ijq_A 39 GVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFR 106 (161)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 555667799999999988876532221112224578999 9999999999999999999999987543
No 256
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=33.89 E-value=1.3e+02 Score=29.34 Aligned_cols=88 Identities=11% Similarity=0.081 Sum_probs=62.6
Q ss_pred HHHHHHHHhhhhhcccccchhHHHHhh--------HHHhHhhhc----CChHHHHHHHHhHHHHHhhcCChhHHHHHHHH
Q 004943 108 ILYKALDLTSSASQDVAVKLWSCNFNS--------QLANAFIIE----GDYQSSISALQSGYVCATEISYPDLQMFFATA 175 (722)
Q Consensus 108 ~l~k~i~~~~~~~~~~~~~~W~~~f~f--------~la~~~~~~----~d~~~A~~~L~~g~~~A~~~~~~~~~v~f~l~ 175 (722)
++.|.|.+|- ++. ..+|-++++- .+--+.+.| .|.. |+...-.....+...|.|+-++. |+
T Consensus 20 Af~KSiRGSD--pDA--Aly~LaRml~~GDp~~IaRRLvi~AsEDIGlAdP~-Al~~a~aa~~a~~~iG~PE~~i~--La 92 (204)
T 2r9g_A 20 AFQKSIRGSD--VDA--ALHYLARLVEAGDLASICRRLMVIGYEDIGLGNPA-AAARTVNAVLAAEKLGLPEARIP--LA 92 (204)
T ss_dssp HHHHHHHTTC--HHH--HHHHHHHHHHHTCHHHHHHHHHHHHHHTTGGGCHH-HHHHHHHHHHHHHHHCTTTTHHH--HH
T ss_pred HHHHHHhcCC--HHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCHH-HHHHHHHHHHHHHHhCCCHHHHH--HH
Confidence 4556666633 333 5677766532 222233333 3444 77777888888999999999985 68
Q ss_pred HHHHHhcccCChhHHHHHHHhhhHHhh
Q 004943 176 ILHVHLMQWDDENSVLRSINQCDRVWE 202 (722)
Q Consensus 176 ~~~~~L~~~~~~~~v~~~l~~~~~~~~ 202 (722)
++-+.|-...+++++-.+++.+.+.++
T Consensus 93 qaviyLA~aPKSNs~y~A~~~A~~~v~ 119 (204)
T 2r9g_A 93 DVVVDLCLSPKSNSAYMALDAALADIR 119 (204)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCccHHHHHHHHHHHHHHH
Confidence 888888889999999999999987776
No 257
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=33.87 E-value=1.7e+02 Score=35.72 Aligned_cols=63 Identities=14% Similarity=-0.035 Sum_probs=48.0
Q ss_pred HHHHHhhHHHHHhhCCHHHHHHHHHHHHHHHHh--CCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004943 408 MQFLENKVAVELTRSGFVEAQEALVQMKNWFIR--FPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEA 476 (722)
Q Consensus 408 a~lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~--~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~A 476 (722)
-..++.+.-.++..|+.++|.+.+.++.+.... .||. ..++.+=.-+...|+.++|...|.+-
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pdv------vTYNtLI~Glck~G~~~eA~~Lf~eM 191 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTL------DMYNAVMLGWARQGAFKELVYVLFMV 191 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCH------HHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCH------hHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 344577889999999999999999888765432 5775 34555555667899999999999653
No 258
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=33.22 E-value=2.1e+02 Score=31.14 Aligned_cols=55 Identities=11% Similarity=0.086 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHc
Q 004943 548 EARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKL 604 (722)
Q Consensus 548 eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki 604 (722)
.+...|.+|+..++...+|.+. .-++-+|.-+.+.+++.+|..++-.|-...++-
T Consensus 282 ~~~~Lf~~AI~~ar~~Y~~~hv--YPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~Y 336 (489)
T 4gq4_A 282 DPLTLYHKGIASAKTYYRDEHI--YPYMYLAGYHCRNRNVREALQAWADTATVIQDY 336 (489)
T ss_dssp CHHHHHHHHHHHHHHHSTTCCS--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHHhcccCcc--cceeecchHHHHhhhHHHHHHHhhhhhhhhhhc
Confidence 4567999999999999999887 456678888889999999999888886655443
No 259
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=32.89 E-value=1.2e+02 Score=29.52 Aligned_cols=88 Identities=15% Similarity=0.144 Sum_probs=61.6
Q ss_pred HHHHHHHHhhhhhcccccchhHHHHhh---------HHHhHhhhc----CChHHHHHHHHhHHHHHhhcCChhHHHHHHH
Q 004943 108 ILYKALDLTSSASQDVAVKLWSCNFNS---------QLANAFIIE----GDYQSSISALQSGYVCATEISYPDLQMFFAT 174 (722)
Q Consensus 108 ~l~k~i~~~~~~~~~~~~~~W~~~f~f---------~la~~~~~~----~d~~~A~~~L~~g~~~A~~~~~~~~~v~f~l 174 (722)
++.|.|.+|- ++. ..+|-++++- .+--+.+.| .|.. |+...-.....+...|.|+-++. |
T Consensus 13 Af~KSiRGSD--pDA--Aly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~-Al~~a~aa~~a~~~iG~PE~~i~--L 85 (201)
T 3bge_A 13 ALHKSVRGSA--PDA--ALYWYARILTAGGDPLYVARRLLAIASEDVGNADPR-AMQVALAAWDCFTRVGAYEGERA--I 85 (201)
T ss_dssp HHHHHHHTTC--HHH--HHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTT-HHHHHHHHHHHHHHTCHHHHHHH--H
T ss_pred HHHHHHhCCC--HHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHH-HHHHHHHHHHHHHHHCCcHHHHH--H
Confidence 4556665532 333 5677776532 122233333 3444 77777788888999999999965 6
Q ss_pred HHHHHHhcccCChhHHHHHHHhhhHHhh
Q 004943 175 AILHVHLMQWDDENSVLRSINQCDRVWE 202 (722)
Q Consensus 175 ~~~~~~L~~~~~~~~v~~~l~~~~~~~~ 202 (722)
+++-+.|-...+++++-.+.+.+.+.++
T Consensus 86 aqaviyLA~aPKSNs~y~A~~~A~~~v~ 113 (201)
T 3bge_A 86 AQAIIYLSVAPKSNAVYTAFNTAKQQAK 113 (201)
T ss_dssp HHHHHHHHHSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCccHHHHHHHHHHHHHHH
Confidence 8888888889999999999999988876
No 260
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=32.15 E-value=4.7e+02 Score=28.57 Aligned_cols=74 Identities=11% Similarity=0.094 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhcchhc--ccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HHH
Q 004943 488 MCHAYAAVSYFCIGDAESSSQAIDLIGPVYQ--MKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQI-AHN 562 (722)
Q Consensus 488 ~allnla~v~l~~G~~e~a~~aL~l~~~l~r--~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~l-a~~ 562 (722)
+..+++--+|.+.|.++-+...+.-+..... ..+ ..+...++.+++-+|..+..+++|.+|..+|.+|++. +..
T Consensus 177 ~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~-~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~ 253 (455)
T 3t5v_B 177 YLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFN-EYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNL 253 (455)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGG-GSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChh-hCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCc
Confidence 3345556789999988765555544433211 111 2334457889999999999999999999999999999 774
No 261
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=31.96 E-value=5.2e+02 Score=27.99 Aligned_cols=189 Identities=8% Similarity=-0.028 Sum_probs=103.4
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhc-------chhHHH
Q 004943 415 VAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITE-------SKSMQA 487 (722)
Q Consensus 415 g~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~-------~~~~~A 487 (722)
+......|+.++|.+.+++|+.. |.... +....+.+ . ..++....+.++..... ....-.
T Consensus 220 a~~~~~~~~~~~ar~i~erAi~~----P~~~~-----l~~~y~~~---~-e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 286 (493)
T 2uy1_A 220 SEYLIGIGQKEKAKKVVERGIEM----SDGMF-----LSLYYGLV---M-DEEAVYGDLKRKYSMGEAESAEKVFSKELD 286 (493)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH----CCSSH-----HHHHHHHH---T-TCTHHHHHHHHHTC----------CHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhC----CCcHH-----HHHHHHhh---c-chhHHHHHHHHHHHhhccchhhhhcccccH
Confidence 33445689999999999999997 65311 11111111 0 00111111111110011 001112
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHhcCC
Q 004943 488 MCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQ-DFQEARNRLAKGLQIAHNHMGN 566 (722)
Q Consensus 488 ~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G-~~~eAk~~L~qAL~la~~~~gd 566 (722)
..+..-+....+.|+.+.++..++.+ .. .+.. ...+...+..-...| +++.|+..++++++. .++
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~---~~~~------~~v~i~~A~lE~~~~~d~~~ar~ife~al~~----~~~ 352 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GN---EGVG------PHVFIYCAFIEYYATGSRATPYNIFSSGLLK----HPD 352 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TT---SCCC------HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH----CTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hC---CCCC------hHHHHHHHHHHHHHCCChHHHHHHHHHHHHH----CCC
Confidence 23333344455567777788888877 21 1111 122333344444444 699999999999985 233
Q ss_pred hHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCchhHhHHHHHHHHHHHH
Q 004943 567 LQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDE 643 (722)
Q Consensus 567 ~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~~~q~~al~~L~~l~~~~Gd~~~A~e~~~~~~~~~~~ 643 (722)
... ............|+.+.|+..++.+. . ...+|.... +.-...|+.+.+...++........
T Consensus 353 ~~~---~~~~yid~e~~~~~~~~aR~l~er~~------k--~~~lw~~~~--~fE~~~G~~~~~r~v~~~~~~~~~~ 416 (493)
T 2uy1_A 353 STL---LKEEFFLFLLRIGDEENARALFKRLE------K--TSRMWDSMI--EYEFMVGSMELFRELVDQKMDAIKA 416 (493)
T ss_dssp CHH---HHHHHHHHHHHHTCHHHHHHHHHHSC------C--BHHHHHHHH--HHHHHHSCHHHHHHHHHHHHHHHHT
T ss_pred CHH---HHHHHHHHHHHcCCHHHHHHHHHHHH------H--HHHHHHHHH--HHHHHCCCHHHHHHHHHHHHHHhcc
Confidence 221 11223455667799999999999982 1 234554433 3334569999999988888877764
No 262
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=31.86 E-value=4.3e+02 Score=30.88 Aligned_cols=90 Identities=13% Similarity=0.047 Sum_probs=63.2
Q ss_pred hCCHHHHHHHHHHHHHHH----HhCCch------hhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHH
Q 004943 421 RSGFVEAQEALVQMKNWF----IRFPTI------LQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCH 490 (722)
Q Consensus 421 ~g~~~eA~~~l~~Al~l~----~~~~d~------~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~al 490 (722)
..+=-+|.+.+.++++-. ...+.. .....+.++..-..++.+.|+|+-|+...++|+..+.+ +-.++
T Consensus 298 ~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs---eF~tW 374 (754)
T 4gns_B 298 ETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALD---SFESW 374 (754)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS---CHHHH
T ss_pred hhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCch---hhHHH
Confidence 345567888888877532 222221 11233457788889999999999999999988876654 35567
Q ss_pred HHHHHHHHhcCChhHHHHHHHHh
Q 004943 491 AYAAVSYFCIGDAESSSQAIDLI 513 (722)
Q Consensus 491 lnla~v~l~~G~~e~a~~aL~l~ 513 (722)
..|+.+|+.+|+++.|--+|.-.
T Consensus 375 ~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 375 YNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccHHHHHHHHhcC
Confidence 78899999999998755555543
No 263
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=31.25 E-value=3.3e+02 Score=33.22 Aligned_cols=122 Identities=10% Similarity=-0.006 Sum_probs=72.4
Q ss_pred cccCcchhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHH----HHHHHHHHH
Q 004943 335 EWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAG----VYLMLLMQF 410 (722)
Q Consensus 335 ~WLpk~~l~aLvylls~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~----~y~~l~a~l 410 (722)
.|+|..... .+|-+.++...|++++|..++++|-.- .+.... .... ...|..- .+.......
T Consensus 836 ~~~~~~~~~---~yl~g~~~L~~ge~~~A~~~F~kaa~~-------~~~~~~--l~~~--~~~~~~~~~~~~~~~~l~~Y 901 (1139)
T 4fhn_B 836 GWLNSDPIA---VYLKALIYLKSKEAVKAVRCFKTTSLV-------LYSHTS--QFAV--LREFQEIAEKYHHQNLLSCY 901 (1139)
T ss_dssp HHSCCCHHH---HHHHHHHHHHTTCHHHHHHHHHTCCCS-------CTTCCC--SCSS--HHHHHHHHHTTTSCCSSHHH
T ss_pred hhccCCcHH---HHHHHHHHHhcCCHHHHHHHHHHHhhh-------hcccch--hhhh--hcccccccccccccccHHHH
Confidence 588887644 367788999999999999999876332 111100 0000 0001000 000001122
Q ss_pred HHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHH
Q 004943 411 LENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHY 473 (722)
Q Consensus 411 Le~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f 473 (722)
..++..+.-.++-++.+++....|++.....++. ....++..+=.++..+|+|++|-.-.
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~---~~~~l~~~iFk~~L~l~~ye~Ay~aL 961 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDED---LSIAITHETLKTACAAGKFDAAHVAL 961 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHH---HHHHHHHHHHHHHHHHCCSGGGGHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChh---hHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 3445666677899999999999998753322221 23346777778889999999986544
No 264
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=31.24 E-value=4.1e+02 Score=29.01 Aligned_cols=130 Identities=8% Similarity=-0.000 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCC-cccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHHHHHHHHHHHHHhCC
Q 004943 364 MQRIQSGMQTIQDALLKLGITDG-VREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFP 442 (722)
Q Consensus 364 ~k~~~~AL~~i~~~~~~lg~~~g-~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~ 442 (722)
...++.+-+.+.+.+.-.....+ ..+.+. +...| ++| + +..++--+|...++...+...++..-.- .-.|
T Consensus 139 ~~~le~~a~~i~k~F~~cl~Dr~~~~~~s~-p~kk~--~~l-~----l~n~L~kiYFkl~~~~lckni~k~i~~~-~~~p 209 (455)
T 3t5v_B 139 HQFLSHISSILSRLFNSIKPPRGNASSTNI-PGKQR--ILL-Y----LVNKLNNIYFRIESPQLCSNIFKNFQPK-SMLA 209 (455)
T ss_dssp THHHHHHHHHHHHHHHHCCCC----CCSSC-CHHHH--HHH-H----HHHHHHHHHHHSSCCTTHHHHHHTHHHH-CCCS
T ss_pred hhHHHHHHHHHHHHHHHhcccCCCcccccc-cccch--hHH-H----HHHHHHHHHHHcCCHHHHHHHHHHhccC-CCCc
Confidence 46677777787777766543222 111111 13455 222 2 2244568899999999888777554432 1122
Q ss_pred chh---hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-hcc-------hhHHHHHHHHHHHHHHhcCC
Q 004943 443 TIL---QACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKI-TES-------KSMQAMCHAYAAVSYFCIGD 502 (722)
Q Consensus 443 d~~---~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l-~~~-------~~~~A~allnla~v~l~~G~ 502 (722)
+.. ......=+|-+|.++...++|.+|..++.+|.+. +.. .+-.-.++..+-.+-+..|+
T Consensus 210 ~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~~~~~~~~n~~~ILkyLIpv~LLlG~ 280 (455)
T 3t5v_B 210 HFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPLTNQAITRNGTRILNYMIPTGLILGK 280 (455)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCccccchhhhhHHHHHHHHHHHHHHHcCC
Confidence 211 1234556788999999999999999999999988 542 23344556666666666687
No 265
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=30.64 E-value=88 Score=34.82 Aligned_cols=61 Identities=16% Similarity=0.079 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 004943 532 LHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLT 599 (722)
Q Consensus 532 al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~ 599 (722)
.+..+|.++...+.+..|+.+|.+|+.+.= ..| ...+.||.++...|+.-+|.=++..|+.
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P-~~G------~~~nqLavla~~~~~~l~a~y~y~rsl~ 214 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVP-SNG------QPYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TBS------HHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCC-CCC------chHHHHHHHHhcccccHHHHHHHHHHHh
Confidence 667788888888888899999999988832 344 4778888888888888888877777664
No 266
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=30.29 E-value=4.4e+02 Score=26.61 Aligned_cols=74 Identities=11% Similarity=0.068 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Q 004943 529 EASLHFAYGLLLM---RQQDFQEARNRLAKGLQIAHNHMGN--LQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKK 603 (722)
Q Consensus 529 ~A~al~~lG~~~~---~~G~~~eAk~~L~qAL~la~~~~gd--~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkk 603 (722)
++.++.-++.+.. +..-.+.|...|++|+++| ..+.. +.-.+.+||.=-=.|--.+++++|..++++|++-|-.
T Consensus 152 KGDYyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA-~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~Ai~ 230 (260)
T 2npm_A 152 KGDYHRYISEFSTGDSKQSSAEDALKAYKDATVVA-KDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEMAIE 230 (260)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH-TTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHT
T ss_pred hccHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH-HhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 4455555554321 1122356899999999998 66665 4445556655333344489999999999999987744
No 267
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=30.27 E-value=6.3e+02 Score=29.47 Aligned_cols=54 Identities=11% Similarity=-0.058 Sum_probs=43.7
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004943 415 VAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEA 476 (722)
Q Consensus 415 g~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~A 476 (722)
+--.+..|+|+-|++..++|... .|+-+ ..++.+..+|..+|+|+.|+-....+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~---aPseF-----~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTEL---ALDSF-----ESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CSSCH-----HHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhc---Cchhh-----HHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 44445689999999999998764 56643 45899999999999999999888765
No 268
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=30.22 E-value=2.8e+02 Score=24.84 Aligned_cols=65 Identities=22% Similarity=0.214 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhcCCHHH---HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q 004943 531 SLHFAYGLLLMRQQDFQE---ARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTL 600 (722)
Q Consensus 531 ~al~~lG~~~~~~G~~~e---Ak~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~l 600 (722)
.+-|.+|....+.....+ +...|+..++. +++...-..+..||-.++..|+++.|+..++.-+.+
T Consensus 36 ~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-----~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 36 STQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-----GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-----SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-----CCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 466777777777777766 45555544332 222233356788888899999999999998877764
No 269
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=29.23 E-value=1.1e+02 Score=26.13 Aligned_cols=70 Identities=17% Similarity=-0.048 Sum_probs=52.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCh
Q 004943 535 AYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDI 607 (722)
Q Consensus 535 ~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lAkki~D~ 607 (722)
..|..++..|+|=+|-+.|+..=.-... .-.....+.+...-|-.+...|+. |..++++|+..-++.++.
T Consensus 6 ~~~~~lfn~g~~~eaHEvlE~~W~~~~~-~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~L~~~~~~ 75 (94)
T 2cwy_A 6 EEVLGLWRAGRYYEVHEVLEPYWLKATG-EERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEARLEGLPCP 75 (94)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHHHhCCCc
Confidence 3456667789999999999988766421 112346667777777788888998 999999999988877654
No 270
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=27.34 E-value=3.3e+02 Score=24.81 Aligned_cols=63 Identities=8% Similarity=-0.092 Sum_probs=38.8
Q ss_pred hhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 004943 413 NKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKI 479 (722)
Q Consensus 413 ~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l 479 (722)
+.+.+.....+...-.+-+.-.-++++..|+. .--.+|.++.-+..+|+|++|.......|+.
T Consensus 45 ~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~----~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 45 NYAWGLIKSTDVNDERLGVKILTDIYKEAESR----RRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhcCcch----hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 34555555544444333333334455566643 2245777777788999999999999766643
No 271
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=27.26 E-value=1.1e+02 Score=30.02 Aligned_cols=87 Identities=17% Similarity=0.179 Sum_probs=61.5
Q ss_pred HHHHHHHHhhhhhcccccchhHHHHhh---------HHHhHhhhc----CChHHHHHHHHhHHHHHhhcCChhHHHHHHH
Q 004943 108 ILYKALDLTSSASQDVAVKLWSCNFNS---------QLANAFIIE----GDYQSSISALQSGYVCATEISYPDLQMFFAT 174 (722)
Q Consensus 108 ~l~k~i~~~~~~~~~~~~~~W~~~f~f---------~la~~~~~~----~d~~~A~~~L~~g~~~A~~~~~~~~~v~f~l 174 (722)
++.|.|.+|- +++ ..+|-++++- .+--+.+.| .|+. |+...-.....+...|.|+-++. |
T Consensus 41 Af~KSiRGSD--pDA--ALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~-Al~~a~aa~~a~~~iG~PE~~i~--L 113 (213)
T 3ctd_A 41 AFIKSIRGSD--PDA--TLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPN-AIVVVQSCCDAFDRVGFPEGLFF--L 113 (213)
T ss_dssp HHHHHHHTTC--HHH--HHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTT-HHHHHHHHHHHHHHHCTTTTHHH--H
T ss_pred HHHHHHhcCC--HHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHH-HHHHHHHHHHHHHHhCCCHHHHH--H
Confidence 4566666633 333 5678776632 122233333 3444 77777888888999999999985 6
Q ss_pred HHHHHHhcccCChhHHHHHHHhhhHHhh
Q 004943 175 AILHVHLMQWDDENSVLRSINQCDRVWE 202 (722)
Q Consensus 175 ~~~~~~L~~~~~~~~v~~~l~~~~~~~~ 202 (722)
+++-+.|-...+++++ .+.+.+.+.++
T Consensus 114 aqaviyLA~APKSNs~-~A~~~A~~~v~ 140 (213)
T 3ctd_A 114 SQASLYLAISPKSNST-KSIFKAMEAIK 140 (213)
T ss_dssp HHHHHHHHHSCCCCGG-GHHHHHHHHHC
T ss_pred HHHHHHHHcCCccHHH-HHHHHHHHHHH
Confidence 7888888889999999 99998877775
No 272
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=25.98 E-value=1.4e+02 Score=28.92 Aligned_cols=53 Identities=13% Similarity=0.016 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcch--hHHHHHHHHHHHHHHhcCC
Q 004943 450 SMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK--SMQAMCHAYAAVSYFCIGD 502 (722)
Q Consensus 450 a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~--~~~A~allnla~v~l~~G~ 502 (722)
..=+|-+|.+++..++|.+|..+|.+|.+.+... +-+-.++..+-.+-+-.|+
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~ 68 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGH 68 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCC
Confidence 4557889999999999999999999999887544 3455566666666666787
No 273
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=25.38 E-value=5.4e+02 Score=25.98 Aligned_cols=72 Identities=10% Similarity=0.021 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Q 004943 529 EASLHFAYGLLLMRQQD-----FQEARNRLAKGLQIAHNHMGN--LQLVSQYLTILGNLALALHDTVQAREILRSSLTLA 601 (722)
Q Consensus 529 ~A~al~~lG~~~~~~G~-----~~eAk~~L~qAL~la~~~~gd--~~l~a~~L~~LG~~~~a~g~~~qA~~~l~~Al~lA 601 (722)
++.++.-++.+ ..|+ .+.|...|++|++++...+.. +.-.+.+||.=-=.|--.+++++|..++++|+.-|
T Consensus 131 KGDYyRYlaE~--~~g~~r~~~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~A 208 (260)
T 1o9d_A 131 KGDYHRYLAEF--KTGAERKEAAESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 208 (260)
T ss_dssp HHHHHHHHHHH--CCSHHHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHh--cCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 45555555553 2332 346899999999999765655 44455566553333445799999999999998776
Q ss_pred H
Q 004943 602 K 602 (722)
Q Consensus 602 k 602 (722)
-
T Consensus 209 i 209 (260)
T 1o9d_A 209 I 209 (260)
T ss_dssp H
T ss_pred H
Confidence 3
No 274
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=25.26 E-value=3.7e+02 Score=27.87 Aligned_cols=103 Identities=7% Similarity=-0.059 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCChH-HHHHHHHHHHHHHHHcCC-hhH
Q 004943 532 LHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTV-QAREILRSSLTLAKKLYD-IPT 609 (722)
Q Consensus 532 al~~lG~~~~~~G~~~eAk~~L~qAL~la~~~~gd~~l~a~~L~~LG~~~~a~g~~~-qA~~~l~~Al~lAkki~D-~~~ 609 (722)
.++.-+......|.+..|-+..-.-++...+ .+. ......+..|..++-.-...+ .=.+.++.|+.|..+.++ +.+
T Consensus 55 lL~~ga~~ll~~~Q~~sa~DLa~llvev~~~-~~~-~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~G 132 (312)
T 2wpv_A 55 LISQGALSFLKAKQGGSGTDLIFYLLEVYDL-AEV-KVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFG 132 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTC-CCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTC
T ss_pred HHHHHHHHHHHCCCcchHHHHHHHHHHHHHH-cCC-CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCC
Confidence 3344444445667777777655444444331 222 223345555656554433211 225888999999998855 334
Q ss_pred HHHHHHHHHHHHHHcCCchhHhHHHHH
Q 004943 610 QIWALSVLTALYQQLGDRGNEMENDEY 636 (722)
Q Consensus 610 q~~al~~L~~l~~~~Gd~~~A~e~~~~ 636 (722)
--.-+..+|..|...|++.+|..||-.
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i~ 159 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFML 159 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHh
Confidence 445678889999999999999888854
No 275
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=25.12 E-value=2.7e+02 Score=34.02 Aligned_cols=89 Identities=8% Similarity=-0.121 Sum_probs=57.4
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHHHHHHHHH
Q 004943 356 PKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMK 435 (722)
Q Consensus 356 ~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~~~l~~Al 435 (722)
-.|+.++|.+.+.+.-++ .. .|..+. +.+.+-|...++..|++++|.+.+.++.
T Consensus 139 K~G~leeA~~Lf~eM~~m----~~-kG~~Pd---------------------vvTYNtLI~Glck~G~~~eA~~Lf~eM~ 192 (1134)
T 3spa_A 139 LTDQLPLAHHLLVVHHGQ----RQ-KRKLLT---------------------LDMYNAVMLGWARQGAFKELVYVLFMVK 192 (1134)
T ss_dssp HHTCHHHHHHHHHHHHHS----HH-HHTTCC---------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHH----hh-cCCCCC---------------------HhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 348889998888776555 21 233343 2233557888999999999999999997
Q ss_pred HHHHhCCchhhhhHHHHHHHHHHHHHHhCC-HHHHHHHHHHHH
Q 004943 436 NWFIRFPTILQACESMIEMLRGQYAHSVGC-YSEAAFHYVEAA 477 (722)
Q Consensus 436 ~l~~~~~d~~~~~~a~i~~llG~~~~alG~-~~~Al~~f~~AL 477 (722)
+-. -.||... ++.+=......|+ .++|...|.+-.
T Consensus 193 ~~G-~~PDvvT------YntLI~glcK~G~~~e~A~~Ll~EM~ 228 (1134)
T 3spa_A 193 DAG-LTPDLLS------YAAALQCMGRQDQDAGTIERCLEQMS 228 (1134)
T ss_dssp HTT-CCCCHHH------HHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HcC-CCCcHHH------HHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 631 1377522 2222223445676 578999996543
No 276
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=24.64 E-value=4.1e+02 Score=24.41 Aligned_cols=63 Identities=8% Similarity=-0.097 Sum_probs=43.8
Q ss_pred hhHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 004943 413 NKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKI 479 (722)
Q Consensus 413 ~Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l 479 (722)
+.+.+.....+...-.+-+.-..++++..|+.-+ -.+|.++.-+..+|+|++|..+....|+.
T Consensus 44 ~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~R----dcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 44 NYAWGLIKSTDVNDERLGVKILTDIYKEAESRRR----ECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp HHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHH----HHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchh----HHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4566666666666555555555567777776422 45777888888999999999999766654
No 277
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=23.46 E-value=1.6e+02 Score=25.26 Aligned_cols=62 Identities=15% Similarity=0.109 Sum_probs=38.1
Q ss_pred HHhhccCCChHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhCCHHHHH
Q 004943 351 VILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQ 428 (722)
Q Consensus 351 ~~~~~~kg~~~kA~k~~~~AL~~i~~~~~~lg~~~g~~e~~l~~~~~w~~~~y~~l~a~lLe~Lg~~~l~~g~~~eA~ 428 (722)
.--+...|.||+|++++++|...+.+..+ +-.... +..-|+.+-=.++=.+.+.+.+|..|.
T Consensus 22 Ae~ll~~gkydeAIech~kAa~yL~eAmk-ltqs~q---------------a~~SLqLQrd~HlKQ~~liq~r~k~~~ 83 (97)
T 2crb_A 22 ADRLLAAGKYEEAISCHRKATTYLSEAMK-LTESEQ---------------AHLSLELQRDSHMKQLLLIQERWKRAK 83 (97)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHT-TCCCHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHH-hhccHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45566789999999999999999776333 322111 111223333345566666666666665
No 278
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=23.32 E-value=2.6e+02 Score=34.19 Aligned_cols=100 Identities=12% Similarity=-0.003 Sum_probs=68.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH-----------------HHHhcCChHHHHHHHHHHHHHHHhCCChHHHHHHH
Q 004943 532 LHFAYGLLLMRQQDFQEARNRLAKGLQI-----------------AHNHMGNLQLVSQYLTILGNLALALHDTVQAREIL 594 (722)
Q Consensus 532 al~~lG~~~~~~G~~~eAk~~L~qAL~l-----------------a~~~~gd~~l~a~~L~~LG~~~~a~g~~~qA~~~l 594 (722)
.-|.+|.++...|++++|..+|++|-.- ...... ..+.+.++..+..++...+-++.+.+..
T Consensus 844 ~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~-~~~l~~YY~hv~~LFe~~~~~~~vi~fa 922 (1139)
T 4fhn_B 844 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHH-QNLLSCYYLHLSKKLFEESAYIDALEFS 922 (1139)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTS-CCSSHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccc-cccHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3488999999999999999999887211 000001 1223456667778899999999999999
Q ss_pred HHHHHHHHHcCChh--HHHHHHHHHHHHHHHcCCchhHhHHHH
Q 004943 595 RSSLTLAKKLYDIP--TQIWALSVLTALYQQLGDRGNEMENDE 635 (722)
Q Consensus 595 ~~Al~lAkki~D~~--~q~~al~~L~~l~~~~Gd~~~A~e~~~ 635 (722)
+.|+..+.. +|.. ..+|+.. =+.+...|++++|..+.-
T Consensus 923 ~lAi~~~~~-~~~~~~~~l~~~i--Fk~~L~l~~ye~Ay~aL~ 962 (1139)
T 4fhn_B 923 LLADASKET-DDEDLSIAITHET--LKTACAAGKFDAAHVALM 962 (1139)
T ss_dssp HHHHHHCCS-CCHHHHHHHHHHH--HHHHHHHCCSGGGGHHHH
T ss_pred HHHHHhccC-CChhhHHHHHHHH--HHHHHhhCCHHHHHHHHH
Confidence 999986543 3432 2345433 355778899999976663
No 279
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=23.20 E-value=1.5e+02 Score=25.18 Aligned_cols=61 Identities=11% Similarity=-0.054 Sum_probs=44.0
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHhCCc-hhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh
Q 004943 415 VAVELTRSGFVEAQEALVQMKNWFIRFPT-ILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKIT 480 (722)
Q Consensus 415 g~~~l~~g~~~eA~~~l~~Al~l~~~~~d-~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~ 480 (722)
|......|+|=+|-+.++....-. |+ .-....+.+....|.|+...|+. |..+|.+++...
T Consensus 8 ~~~lfn~g~~~eaHEvlE~~W~~~---~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~L 69 (94)
T 2cwy_A 8 VLGLWRAGRYYEVHEVLEPYWLKA---TGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEARL 69 (94)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHH
T ss_pred HHHHHhCCChHHHHHHHHHHHhhC---CCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHH
Confidence 555667799999988888876543 32 11235678888888888888888 888888777644
No 280
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=23.18 E-value=5.9e+02 Score=25.71 Aligned_cols=57 Identities=11% Similarity=0.038 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHH
Q 004943 546 FQEARNRLAKGLQIAHNHMGN--LQLVSQYLTILGNLALA-LHDTVQAREILRSSLTLAKK 603 (722)
Q Consensus 546 ~~eAk~~L~qAL~la~~~~gd--~~l~a~~L~~LG~~~~a-~g~~~qA~~~l~~Al~lAkk 603 (722)
.+.|...|++|+++|...+.. +.-.+.+||. +..|.. .+++++|..++++|++-|-.
T Consensus 172 ~e~a~~aY~~A~~iA~~~L~pThPirLGLaLNf-SVFyYEIln~p~~Ac~LAk~AFd~Ai~ 231 (261)
T 3ubw_A 172 AENSLVAYKAASDIAMTELPPTHPIRLGLALNF-SVFYYEILNSPDRACRLAKAAFDDAIA 231 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH-HHHHHHTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 356889999999998766664 5556666765 344444 79999999999999987743
No 281
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.68 E-value=6.9e+02 Score=26.30 Aligned_cols=101 Identities=12% Similarity=0.024 Sum_probs=70.5
Q ss_pred HHHhCCHHHHHHHHHHHHHhhc--------------chhHHHHHHHHHHHHHHhcCChhHHHHHHHHhcchhcccccccC
Q 004943 460 AHSVGCYSEAAFHYVEAAKITE--------------SKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTING 525 (722)
Q Consensus 460 ~~alG~~~~Al~~f~~AL~l~~--------------~~~~~A~allnla~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~ 525 (722)
.....+.++|+.+..+...... ......++...++..|+..|+.+.+...++.+.......++ .+
T Consensus 86 ~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~-~~ 164 (393)
T 4b4t_O 86 LKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDS-IP 164 (393)
T ss_dssp HHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCC-SS
T ss_pred HhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCC-cc
Confidence 3455677888877754322110 01234566677788899999998888888888766444432 23
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 004943 526 VREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAH 561 (722)
Q Consensus 526 ~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~la~ 561 (722)
....+..+...|..+...+++.++..+.-..+....
T Consensus 165 ~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~ 200 (393)
T 4b4t_O 165 LRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLE 200 (393)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Confidence 334677888889999999999999998888887643
No 282
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=22.05 E-value=4.6e+02 Score=29.77 Aligned_cols=128 Identities=13% Similarity=0.022 Sum_probs=78.9
Q ss_pred hHHHHHhhCCHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 004943 414 KVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYA 493 (722)
Q Consensus 414 Lg~~~l~~g~~~eA~~~l~~Al~l~~~~~d~~~~~~a~i~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~~~A~allnl 493 (722)
.++-.+.+.+.+.|...+.....-. .+.+. ....+...++.-....+...++...+..+.....+...... .+
T Consensus 220 ~~~~rlar~d~~~A~~~~~~~~~~~-~~~~~---~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~---~~ 292 (618)
T 1qsa_A 220 VAFASVARQDAENARLMIPSLAQAQ-QLNED---QIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIER---RV 292 (618)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHT-TCCHH---HHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHH---HH
T ss_pred HHHHHHHhcCHHHHHHHHHhhhhcc-CCCHH---HHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHH---HH
Confidence 3566777889999988877665421 22221 22334444555545555466777788765544333322221 22
Q ss_pred HHHHHhcCChhHHHHHHHHhcchhcccccccChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004943 494 AVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQ 558 (722)
Q Consensus 494 a~v~l~~G~~e~a~~aL~l~~~l~r~~~~~~~~~~~A~al~~lG~~~~~~G~~~eAk~~L~qAL~ 558 (722)
+. -++.||++.+.+.++.+.+... .+....+.+|.++...|+..+|+..|+++.+
T Consensus 293 r~-Alr~~d~~~a~~~~~~l~~~~~---------~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 293 RM-ALGTGDRRGLNTWLARLPMEAK---------EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HH-HHHHTCHHHHHHHHHHSCTTGG---------GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HH-HHHCCCHHHHHHHHHHcccccc---------ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 22 2456898888888876544211 1345677888888999999999999999765
No 283
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=20.01 E-value=1.1e+02 Score=24.91 Aligned_cols=32 Identities=19% Similarity=0.239 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhhcchh
Q 004943 453 EMLRGQYAHSVGCYSEAAFHYVEAAKITESKS 484 (722)
Q Consensus 453 ~~llG~~~~alG~~~~Al~~f~~AL~l~~~~~ 484 (722)
...+|.-..+.|++++|..||-.|++.+..+.
T Consensus 20 eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~ 51 (73)
T 3ax2_A 20 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQ 51 (73)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHH
Confidence 45578888999999999999988888776653
Done!