BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004944
(722 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FWE|A Chain A, Native Structure Of Lsd2 /aof1/kdm1b In Spacegroup Of
C2221 At 2.13a
pdb|4FWF|A Chain A, Complex Structure Of Lsd2/aof1/kdm1b With H3k4 Mimic
pdb|4FWJ|A Chain A, Native Structure Of Lsd2/aof1/kdm1b In Spacegroup Of I222
At 2.9a
pdb|4FWJ|B Chain B, Native Structure Of Lsd2/aof1/kdm1b In Spacegroup Of I222
At 2.9a
Length = 796
Score = 256 bits (653), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 144/425 (33%), Positives = 227/425 (53%), Gaps = 19/425 (4%)
Query: 71 FRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLGSLLH 130
+VTVLE + R GGRV+ K G + G ++ G + NP+ ++ +QLG +H
Sbjct: 380 IKVTVLEAKDRIGGRVWDDKSFKGV------TVGRGAQIVNGCINNPVALMCEQLGISMH 433
Query: 131 KVRDKCPLYRLDGNSVDPEIDMKVEADFNRLLDKASRLRQLMGEVAMDVSLGSALETFWR 190
K ++C L + G DP ID +++ FN LLD S R+ ++ DV LG +E ++
Sbjct: 434 KFGERCDLIQEGGRITDPTIDKRMDFHFNALLDVVSEWRKDKTQL-QDVPLGEKIEEIYK 492
Query: 191 VYWDSGNAEAMNL----FNWHLANLEYXXXXXXXXXXXXFWDQDDPY-DMGGDHCFLPGG 245
+ + L +HL+NLEY WD ++ + GDH L G
Sbjct: 493 AFIKESGIQFSELEGQVLQFHLSNLEYACGSNLHQVSARSWDHNEFFAQFAGDHTLLTPG 552
Query: 246 NGRLVQALVENVPILYEKTVHTIRYGSDGVQVLAGSQV-FEGDMVLCTVPLGVLKSGSIK 304
+++ L E + I + V I Y D VQV + VL TVPL +L+ G+I+
Sbjct: 553 YSVIIEKLAEGLDIQLKSPVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVPLALLQKGAIQ 612
Query: 305 FIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDL---DTFGHLTDDSSSRGEFFLFY 361
F P L ++K+ AI LG G++ K+A+ FPY FW++ + D FGH+ +S RG F +FY
Sbjct: 613 FNPPLSEKKMKAINSLGAGIIEKIALQFPYRFWDSKVQGADFFGHVPPSASKRGLFAVFY 672
Query: 362 SYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTR 421
+L++++AGEA ++ + + + L+ +++ + VP+P + TR
Sbjct: 673 DMDPQKKHSVLMSVIAGEAVASVRTLDDKQVLQQCMATLRELFKEQ--EVPDPTKYFVTR 730
Query: 422 WGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGLRE 481
W DP+ +YS V G SG+ YDI+AE + G +FFAGEAT R +P T+ GA+LSG+RE
Sbjct: 731 WSTDPWIQMAYSFVKTGGSGEAYDIIAEDI-QGTVFFAGEATNRHFPQTVTGAYLSGVRE 789
Query: 482 TAKMA 486
+K+A
Sbjct: 790 ASKIA 794
>pdb|4GUR|A Chain A, Crystal Structure Of Lsd2-npac With H3 In Space Group P21
pdb|4GUS|A Chain A, Crystal Structure Of Lsd2-npac With H3 In Space Group
P3221
pdb|4GUT|A Chain A, Crystal Structure Of Lsd2-npac
pdb|4GUU|A Chain A, Crystal Structure Of Lsd2-npac With Tranylcypromine
pdb|4GU0|A Chain A, Crystal Structure Of Lsd2 With H3
pdb|4GU0|B Chain B, Crystal Structure Of Lsd2 With H3
pdb|4GU0|C Chain C, Crystal Structure Of Lsd2 With H3
pdb|4GU0|D Chain D, Crystal Structure Of Lsd2 With H3
pdb|4HSU|A Chain A, Crystal Structure Of Lsd2-npac With H3(1-26)in Space Group
P21
Length = 776
Score = 255 bits (652), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 144/425 (33%), Positives = 227/425 (53%), Gaps = 19/425 (4%)
Query: 71 FRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLGSLLH 130
+VTVLE + R GGRV+ K G + G ++ G + NP+ ++ +QLG +H
Sbjct: 360 IKVTVLEAKDRIGGRVWDDKSFKGV------TVGRGAQIVNGCINNPVALMCEQLGISMH 413
Query: 131 KVRDKCPLYRLDGNSVDPEIDMKVEADFNRLLDKASRLRQLMGEVAMDVSLGSALETFWR 190
K ++C L + G DP ID +++ FN LLD S R+ ++ DV LG +E ++
Sbjct: 414 KFGERCDLIQEGGRITDPTIDKRMDFHFNALLDVVSEWRKDKTQL-QDVPLGEKIEEIYK 472
Query: 191 VYWDSGNAEAMNL----FNWHLANLEYXXXXXXXXXXXXFWDQDDPY-DMGGDHCFLPGG 245
+ + L +HL+NLEY WD ++ + GDH L G
Sbjct: 473 AFIKESGIQFSELEGQVLQFHLSNLEYACGSNLHQVSARSWDHNEFFAQFAGDHTLLTPG 532
Query: 246 NGRLVQALVENVPILYEKTVHTIRYGSDGVQVLAGSQV-FEGDMVLCTVPLGVLKSGSIK 304
+++ L E + I + V I Y D VQV + VL TVPL +L+ G+I+
Sbjct: 533 YSVIIEKLAEGLDIQLKSPVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVPLALLQKGAIQ 592
Query: 305 FIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDL---DTFGHLTDDSSSRGEFFLFY 361
F P L ++K+ AI LG G++ K+A+ FPY FW++ + D FGH+ +S RG F +FY
Sbjct: 593 FNPPLSEKKMKAINSLGAGIIEKIALQFPYRFWDSKVQGADFFGHVPPSASKRGLFAVFY 652
Query: 362 SYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTR 421
+L++++AGEA ++ + + + L+ +++ + VP+P + TR
Sbjct: 653 DMDPQKKHSVLMSVIAGEAVASVRTLDDKQVLQQCMATLRELFKEQ--EVPDPTKYFVTR 710
Query: 422 WGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGLRE 481
W DP+ +YS V G SG+ YDI+AE + G +FFAGEAT R +P T+ GA+LSG+RE
Sbjct: 711 WSTDPWIQMAYSFVKTGGSGEAYDIIAEDI-QGTVFFAGEATNRHFPQTVTGAYLSGVRE 769
Query: 482 TAKMA 486
+K+A
Sbjct: 770 ASKIA 774
>pdb|4GU1|A Chain A, Crystal Structure Of Lsd2
pdb|4GU1|B Chain B, Crystal Structure Of Lsd2
Length = 784
Score = 255 bits (652), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 144/425 (33%), Positives = 227/425 (53%), Gaps = 19/425 (4%)
Query: 71 FRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLGSLLH 130
+VTVLE + R GGRV+ K G + G ++ G + NP+ ++ +QLG +H
Sbjct: 368 IKVTVLEAKDRIGGRVWDDKSFKGV------TVGRGAQIVNGCINNPVALMCEQLGISMH 421
Query: 131 KVRDKCPLYRLDGNSVDPEIDMKVEADFNRLLDKASRLRQLMGEVAMDVSLGSALETFWR 190
K ++C L + G DP ID +++ FN LLD S R+ ++ DV LG +E ++
Sbjct: 422 KFGERCDLIQEGGRITDPTIDKRMDFHFNALLDVVSEWRKDKTQL-QDVPLGEKIEEIYK 480
Query: 191 VYWDSGNAEAMNL----FNWHLANLEYXXXXXXXXXXXXFWDQDDPY-DMGGDHCFLPGG 245
+ + L +HL+NLEY WD ++ + GDH L G
Sbjct: 481 AFIKESGIQFSELEGQVLQFHLSNLEYACGSNLHQVSARSWDHNEFFAQFAGDHTLLTPG 540
Query: 246 NGRLVQALVENVPILYEKTVHTIRYGSDGVQVLAGSQV-FEGDMVLCTVPLGVLKSGSIK 304
+++ L E + I + V I Y D VQV + VL TVPL +L+ G+I+
Sbjct: 541 YSVIIEKLAEGLDIQLKSPVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVPLALLQKGAIQ 600
Query: 305 FIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDL---DTFGHLTDDSSSRGEFFLFY 361
F P L ++K+ AI LG G++ K+A+ FPY FW++ + D FGH+ +S RG F +FY
Sbjct: 601 FNPPLSEKKMKAINSLGAGIIEKIALQFPYRFWDSKVQGADFFGHVPPSASKRGLFAVFY 660
Query: 362 SYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTR 421
+L++++AGEA ++ + + + L+ +++ + VP+P + TR
Sbjct: 661 DMDPQKKHSVLMSVIAGEAVASVRTLDDKQVLQQCMATLRELFKEQ--EVPDPTKYFVTR 718
Query: 422 WGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGLRE 481
W DP+ +YS V G SG+ YDI+AE + G +FFAGEAT R +P T+ GA+LSG+RE
Sbjct: 719 WSTDPWIQMAYSFVKTGGSGEAYDIIAEDI-QGTVFFAGEATNRHFPQTVTGAYLSGVRE 777
Query: 482 TAKMA 486
+K+A
Sbjct: 778 ASKIA 782
>pdb|2X0L|A Chain A, Crystal Structure Of A Neuro-Specific Splicing Variant Of
Human Histone Lysine Demethylase Lsd1
Length = 734
Score = 246 bits (627), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 131/305 (42%), Positives = 183/305 (60%), Gaps = 25/305 (8%)
Query: 202 NLFNWHLANLEYXXXXXXXXXXXXFWDQDDPYDMGGDHCFLPGGNGRLVQALVENVPILY 261
+ +WH ANLE+ WDQDD ++ G H + G + AL E + I
Sbjct: 409 QILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKL 468
Query: 262 EKTVHTIRYGSDGVQVLA-----GSQVF--EGDMVLCTVPLGVLKSG--SIKFIPELPQR 312
V +RY + G +V+A SQ F + D VLCT+PLGVLK +++F+P LP+
Sbjct: 469 NTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEW 528
Query: 313 KLDAIKRLGYGLLNKVAMLFPYVFWETDLDTFGHLTDDSSSRGEFFLFYSYATVAGGPLL 372
K A++R+G+G LNKV + F VFW+ ++ FGH+ ++SRGE FLF++ + P+L
Sbjct: 529 KTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWN---LYKAPIL 585
Query: 373 IALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSY 432
+ALVAGEAA E++ V + L ILKGI+ VP+P +TV +RW DP++ GSY
Sbjct: 586 LALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSA--VPQPKETVVSRWRADPWARGSY 643
Query: 433 SNVAVGASGDDYDIMAESVGDG-----------RLFFAGEATIRRYPATMHGAFLSGLRE 481
S VA G+SG+DYD+MA+ + G RLFFAGE TIR YPAT+HGA LSGLRE
Sbjct: 644 SYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLRE 703
Query: 482 TAKMA 486
++A
Sbjct: 704 AGRIA 708
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 89/182 (48%), Gaps = 18/182 (9%)
Query: 13 LLDSAYNYLVSNGYINFGVAPEIKEKIPVEPSSNKXXXXXXXXXXXXXXXXXXXXXXXFR 72
L+ ++YL +G INFG+ IK P+ P+
Sbjct: 126 LVHRVHSYLERHGLINFGIYKRIK---PL-PTKKTGKVIIIGSGVSGLAAARQLQSFGMD 181
Query: 73 VTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLGSLLHKV 132
VT+LE R R GGRV T + GN + ADLG V+TG GNP+ +++KQ+ L K+
Sbjct: 182 VTLLEARDRVGGRVATFR----KGNYV---ADLGAMVVTGLGGNPMAVVSKQVNMELAKI 234
Query: 133 RDKCPLYRLDGNS----VDPEIDMKVEADFNRLLDKASRLRQLMGEVAMD---VSLGSAL 185
+ KCPLY +G + V E D VE +FNRLL+ S L + ++ VSLG AL
Sbjct: 235 KQKCPLYEANGQADTVKVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQAL 294
Query: 186 ET 187
E
Sbjct: 295 EV 296
>pdb|2V1D|A Chain A, Structural Basis Of Lsd1-Corest Selectivity In Histone H3
Recognition
pdb|2Y48|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A N-
Terminal Snail Peptide
Length = 730
Score = 246 bits (627), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 131/305 (42%), Positives = 183/305 (60%), Gaps = 25/305 (8%)
Query: 202 NLFNWHLANLEYXXXXXXXXXXXXFWDQDDPYDMGGDHCFLPGGNGRLVQALVENVPILY 261
+ +WH ANLE+ WDQDD ++ G H + G + AL E + I
Sbjct: 405 QILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKL 464
Query: 262 EKTVHTIRYGSDGVQVLA-----GSQVF--EGDMVLCTVPLGVLKSG--SIKFIPELPQR 312
V +RY + G +V+A SQ F + D VLCT+PLGVLK +++F+P LP+
Sbjct: 465 NTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEW 524
Query: 313 KLDAIKRLGYGLLNKVAMLFPYVFWETDLDTFGHLTDDSSSRGEFFLFYSYATVAGGPLL 372
K A++R+G+G LNKV + F VFW+ ++ FGH+ ++SRGE FLF++ + P+L
Sbjct: 525 KTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWN---LYKAPIL 581
Query: 373 IALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSY 432
+ALVAGEAA E++ V + L ILKGI+ VP+P +TV +RW DP++ GSY
Sbjct: 582 LALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSA--VPQPKETVVSRWRADPWARGSY 639
Query: 433 SNVAVGASGDDYDIMAESVGDG-----------RLFFAGEATIRRYPATMHGAFLSGLRE 481
S VA G+SG+DYD+MA+ + G RLFFAGE TIR YPAT+HGA LSGLRE
Sbjct: 640 SYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLRE 699
Query: 482 TAKMA 486
++A
Sbjct: 700 AGRIA 704
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 89/178 (50%), Gaps = 14/178 (7%)
Query: 13 LLDSAYNYLVSNGYINFGVAPEIKEKIPVEPSSNKXXXXXXXXXXXXXXXXXXXXXXXFR 72
L+ ++YL +G INFG+ IK P+ P+
Sbjct: 126 LVHRVHSYLERHGLINFGIYKRIK---PL-PTKKTGKVIIIGSGVSGLAAARQLQSFGMD 181
Query: 73 VTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLGSLLHKV 132
VT+LE R R GGRV T + GN + ADLG V+TG GNP+ +++KQ+ L K+
Sbjct: 182 VTLLEARDRVGGRVATFR----KGNYV---ADLGAMVVTGLGGNPMAVVSKQVNMELAKI 234
Query: 133 RDKCPLYRLDGNSVDPEIDMKVEADFNRLLDKASRLRQLMGEVAMD---VSLGSALET 187
+ KCPLY +G +V E D VE +FNRLL+ S L + ++ VSLG ALE
Sbjct: 235 KQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQALEV 292
>pdb|2DW4|A Chain A, Crystal Structure Of Human Lsd1 At 2.3 A Resolution
Length = 660
Score = 245 bits (626), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 131/305 (42%), Positives = 183/305 (60%), Gaps = 25/305 (8%)
Query: 202 NLFNWHLANLEYXXXXXXXXXXXXFWDQDDPYDMGGDHCFLPGGNGRLVQALVENVPILY 261
+ +WH ANLE+ WDQDD ++ G H + G + AL E + I
Sbjct: 356 QILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKL 415
Query: 262 EKTVHTIRYGSDGVQVLA-----GSQVF--EGDMVLCTVPLGVLKSG--SIKFIPELPQR 312
V +RY + G +V+A SQ F + D VLCT+PLGVLK +++F+P LP+
Sbjct: 416 NTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEW 475
Query: 313 KLDAIKRLGYGLLNKVAMLFPYVFWETDLDTFGHLTDDSSSRGEFFLFYSYATVAGGPLL 372
K A++R+G+G LNKV + F VFW+ ++ FGH+ ++SRGE FLF++ + P+L
Sbjct: 476 KTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWN---LYKAPIL 532
Query: 373 IALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSY 432
+ALVAGEAA E++ V + L ILKGI+ VP+P +TV +RW DP++ GSY
Sbjct: 533 LALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSA--VPQPKETVVSRWRADPWARGSY 590
Query: 433 SNVAVGASGDDYDIMAESVGDG-----------RLFFAGEATIRRYPATMHGAFLSGLRE 481
S VA G+SG+DYD+MA+ + G RLFFAGE TIR YPAT+HGA LSGLRE
Sbjct: 591 SYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLRE 650
Query: 482 TAKMA 486
++A
Sbjct: 651 AGRIA 655
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 89/178 (50%), Gaps = 14/178 (7%)
Query: 13 LLDSAYNYLVSNGYINFGVAPEIKEKIPVEPSSNKXXXXXXXXXXXXXXXXXXXXXXXFR 72
L+ ++YL +G INFG+ IK P+ P+
Sbjct: 77 LVHRVHSYLERHGLINFGIYKRIK---PL-PTKKTGKVIIIGSGVSGLAAARQLQSFGMD 132
Query: 73 VTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLGSLLHKV 132
VT+LE R R GGRV T + GN + ADLG V+TG GNP+ +++KQ+ L K+
Sbjct: 133 VTLLEARDRVGGRVATFR----KGNYV---ADLGAMVVTGLGGNPMAVVSKQVNMELAKI 185
Query: 133 RDKCPLYRLDGNSVDPEIDMKVEADFNRLLDKASRLRQLMGEVAMD---VSLGSALET 187
+ KCPLY +G +V E D VE +FNRLL+ S L + ++ VSLG ALE
Sbjct: 186 KQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQALEV 243
>pdb|2EJR|A Chain A, Lsd1-Tranylcypromine Complex
pdb|2Z3Y|A Chain A, Crystal Structure Of Lysine-Specific Demethylase1
pdb|2Z5U|A Chain A, Crystal Structure Of Lysine-Specific Histone Demethylase 1
pdb|3ABT|A Chain A, Crystal Structure Of Lsd1 In Complex With Trans-2-
Pentafluorophenylcyclopropylamine
pdb|3ABU|A Chain A, Crystal Structure Of Lsd1 In Complex With A 2-Pcpa
Derivative, S1201
Length = 662
Score = 245 bits (626), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 131/305 (42%), Positives = 183/305 (60%), Gaps = 25/305 (8%)
Query: 202 NLFNWHLANLEYXXXXXXXXXXXXFWDQDDPYDMGGDHCFLPGGNGRLVQALVENVPILY 261
+ +WH ANLE+ WDQDD ++ G H + G + AL E + I
Sbjct: 356 QILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKL 415
Query: 262 EKTVHTIRYGSDGVQVLA-----GSQVF--EGDMVLCTVPLGVLKSG--SIKFIPELPQR 312
V +RY + G +V+A SQ F + D VLCT+PLGVLK +++F+P LP+
Sbjct: 416 NTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEW 475
Query: 313 KLDAIKRLGYGLLNKVAMLFPYVFWETDLDTFGHLTDDSSSRGEFFLFYSYATVAGGPLL 372
K A++R+G+G LNKV + F VFW+ ++ FGH+ ++SRGE FLF++ + P+L
Sbjct: 476 KTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWN---LYKAPIL 532
Query: 373 IALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSY 432
+ALVAGEAA E++ V + L ILKGI+ VP+P +TV +RW DP++ GSY
Sbjct: 533 LALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSA--VPQPKETVVSRWRADPWARGSY 590
Query: 433 SNVAVGASGDDYDIMAESVGDG-----------RLFFAGEATIRRYPATMHGAFLSGLRE 481
S VA G+SG+DYD+MA+ + G RLFFAGE TIR YPAT+HGA LSGLRE
Sbjct: 591 SYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLRE 650
Query: 482 TAKMA 486
++A
Sbjct: 651 AGRIA 655
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 89/178 (50%), Gaps = 14/178 (7%)
Query: 13 LLDSAYNYLVSNGYINFGVAPEIKEKIPVEPSSNKXXXXXXXXXXXXXXXXXXXXXXXFR 72
L+ ++YL +G INFG+ IK P+ P+
Sbjct: 77 LVHRVHSYLERHGLINFGIYKRIK---PL-PTKKTGKVIIIGSGVSGLAAARQLQSFGMD 132
Query: 73 VTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLGSLLHKV 132
VT+LE R R GGRV T + GN + ADLG V+TG GNP+ +++KQ+ L K+
Sbjct: 133 VTLLEARDRVGGRVATFR----KGNYV---ADLGAMVVTGLGGNPMAVVSKQVNMELAKI 185
Query: 133 RDKCPLYRLDGNSVDPEIDMKVEADFNRLLDKASRLRQLMGEVAMD---VSLGSALET 187
+ KCPLY +G +V E D VE +FNRLL+ S L + ++ VSLG ALE
Sbjct: 186 KQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQALEV 243
>pdb|2IW5|A Chain A, Structural Basis For Corest-dependent Demethylation Of
Nucleosomes By The Human Lsd1 Histone Demethylase
pdb|2UXN|A Chain A, Structural Basis Of Histone Demethylation By Lsd1 Revealed
By Suicide Inactivation
pdb|2UXX|A Chain A, Human Lsd1 Histone Demethylase-Corest In Complex With An
Fad-Tranylcypromine Adduct
Length = 666
Score = 245 bits (626), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 131/305 (42%), Positives = 183/305 (60%), Gaps = 25/305 (8%)
Query: 202 NLFNWHLANLEYXXXXXXXXXXXXFWDQDDPYDMGGDHCFLPGGNGRLVQALVENVPILY 261
+ +WH ANLE+ WDQDD ++ G H + G + AL E + I
Sbjct: 357 QILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKL 416
Query: 262 EKTVHTIRYGSDGVQVLA-----GSQVF--EGDMVLCTVPLGVLKSG--SIKFIPELPQR 312
V +RY + G +V+A SQ F + D VLCT+PLGVLK +++F+P LP+
Sbjct: 417 NTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEW 476
Query: 313 KLDAIKRLGYGLLNKVAMLFPYVFWETDLDTFGHLTDDSSSRGEFFLFYSYATVAGGPLL 372
K A++R+G+G LNKV + F VFW+ ++ FGH+ ++SRGE FLF++ + P+L
Sbjct: 477 KTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWN---LYKAPIL 533
Query: 373 IALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSY 432
+ALVAGEAA E++ V + L ILKGI+ VP+P +TV +RW DP++ GSY
Sbjct: 534 LALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSA--VPQPKETVVSRWRADPWARGSY 591
Query: 433 SNVAVGASGDDYDIMAESVGDG-----------RLFFAGEATIRRYPATMHGAFLSGLRE 481
S VA G+SG+DYD+MA+ + G RLFFAGE TIR YPAT+HGA LSGLRE
Sbjct: 592 SYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLRE 651
Query: 482 TAKMA 486
++A
Sbjct: 652 AGRIA 656
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 89/178 (50%), Gaps = 14/178 (7%)
Query: 13 LLDSAYNYLVSNGYINFGVAPEIKEKIPVEPSSNKXXXXXXXXXXXXXXXXXXXXXXXFR 72
L+ ++YL +G INFG+ IK P+ P+
Sbjct: 78 LVHRVHSYLERHGLINFGIYKRIK---PL-PTKKTGKVIIIGSGVSGLAAARQLQSFGMD 133
Query: 73 VTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLGSLLHKV 132
VT+LE R R GGRV T + GN + ADLG V+TG GNP+ +++KQ+ L K+
Sbjct: 134 VTLLEARDRVGGRVATFR----KGNYV---ADLGAMVVTGLGGNPMAVVSKQVNMELAKI 186
Query: 133 RDKCPLYRLDGNSVDPEIDMKVEADFNRLLDKASRLRQLMGEVAMD---VSLGSALET 187
+ KCPLY +G +V E D VE +FNRLL+ S L + ++ VSLG ALE
Sbjct: 187 KQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQALEV 244
>pdb|2H94|A Chain A, Crystal Structure And Mechanism Of Human Lysine-Specific
Demethylase-1
Length = 664
Score = 245 bits (626), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 131/305 (42%), Positives = 183/305 (60%), Gaps = 25/305 (8%)
Query: 202 NLFNWHLANLEYXXXXXXXXXXXXFWDQDDPYDMGGDHCFLPGGNGRLVQALVENVPILY 261
+ +WH ANLE+ WDQDD ++ G H + G + AL E + I
Sbjct: 356 QILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKL 415
Query: 262 EKTVHTIRYGSDGVQVLA-----GSQVF--EGDMVLCTVPLGVLKSG--SIKFIPELPQR 312
V +RY + G +V+A SQ F + D VLCT+PLGVLK +++F+P LP+
Sbjct: 416 NTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEW 475
Query: 313 KLDAIKRLGYGLLNKVAMLFPYVFWETDLDTFGHLTDDSSSRGEFFLFYSYATVAGGPLL 372
K A++R+G+G LNKV + F VFW+ ++ FGH+ ++SRGE FLF++ + P+L
Sbjct: 476 KTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWN---LYKAPIL 532
Query: 373 IALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSY 432
+ALVAGEAA E++ V + L ILKGI+ VP+P +TV +RW DP++ GSY
Sbjct: 533 LALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSA--VPQPKETVVSRWRADPWARGSY 590
Query: 433 SNVAVGASGDDYDIMAESVGDG-----------RLFFAGEATIRRYPATMHGAFLSGLRE 481
S VA G+SG+DYD+MA+ + G RLFFAGE TIR YPAT+HGA LSGLRE
Sbjct: 591 SYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLRE 650
Query: 482 TAKMA 486
++A
Sbjct: 651 AGRIA 655
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 89/178 (50%), Gaps = 14/178 (7%)
Query: 13 LLDSAYNYLVSNGYINFGVAPEIKEKIPVEPSSNKXXXXXXXXXXXXXXXXXXXXXXXFR 72
L+ ++YL +G INFG+ IK P+ P+
Sbjct: 77 LVHRVHSYLERHGLINFGIYKRIK---PL-PTKKTGKVIIIGSGVSGLAAARQLQSFGMD 132
Query: 73 VTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLGSLLHKV 132
VT+LE R R GGRV T + GN + ADLG V+TG GNP+ +++KQ+ L K+
Sbjct: 133 VTLLEARDRVGGRVATFR----KGNYV---ADLGAMVVTGLGGNPMAVVSKQVNMELAKI 185
Query: 133 RDKCPLYRLDGNSVDPEIDMKVEADFNRLLDKASRLRQLMGEVAMD---VSLGSALET 187
+ KCPLY +G +V E D VE +FNRLL+ S L + ++ VSLG ALE
Sbjct: 186 KQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQALEV 243
>pdb|2XAF|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine
pdb|2XAG|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (-)-Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAH|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With (+)-
Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAJ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
(-)-Trans- 2-Phenylcyclopropyl-1-Amine
pdb|2XAQ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2584, 13b)
pdb|2XAS|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2580, 14e)
Length = 852
Score = 245 bits (625), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 131/305 (42%), Positives = 183/305 (60%), Gaps = 25/305 (8%)
Query: 202 NLFNWHLANLEYXXXXXXXXXXXXFWDQDDPYDMGGDHCFLPGGNGRLVQALVENVPILY 261
+ +WH ANLE+ WDQDD ++ G H + G + AL E + I
Sbjct: 527 QILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKL 586
Query: 262 EKTVHTIRYGSDGVQVLA-----GSQVF--EGDMVLCTVPLGVLKSG--SIKFIPELPQR 312
V +RY + G +V+A SQ F + D VLCT+PLGVLK +++F+P LP+
Sbjct: 587 NTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEW 646
Query: 313 KLDAIKRLGYGLLNKVAMLFPYVFWETDLDTFGHLTDDSSSRGEFFLFYSYATVAGGPLL 372
K A++R+G+G LNKV + F VFW+ ++ FGH+ ++SRGE FLF++ + P+L
Sbjct: 647 KTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWN---LYKAPIL 703
Query: 373 IALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSY 432
+ALVAGEAA E++ V + L ILKGI+ VP+P +TV +RW DP++ GSY
Sbjct: 704 LALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSA--VPQPKETVVSRWRADPWARGSY 761
Query: 433 SNVAVGASGDDYDIMAESVGDG-----------RLFFAGEATIRRYPATMHGAFLSGLRE 481
S VA G+SG+DYD+MA+ + G RLFFAGE TIR YPAT+HGA LSGLRE
Sbjct: 762 SYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLRE 821
Query: 482 TAKMA 486
++A
Sbjct: 822 AGRIA 826
Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 89/177 (50%), Gaps = 14/177 (7%)
Query: 13 LLDSAYNYLVSNGYINFGVAPEIKEKIPVEPSSNKXXXXXXXXXXXXXXXXXXXXXXXFR 72
L+ ++YL +G INFG+ IK P+ P+
Sbjct: 248 LVHRVHSYLERHGLINFGIYKRIK---PL-PTKKTGKVIIIGSGVSGLAAARQLQSFGMD 303
Query: 73 VTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLGSLLHKV 132
VT+LE R R GGRV T + GN + ADLG V+TG GNP+ +++KQ+ L K+
Sbjct: 304 VTLLEARDRVGGRVATFR----KGNYV---ADLGAMVVTGLGGNPMAVVSKQVNMELAKI 356
Query: 133 RDKCPLYRLDGNSVDPEIDMKVEADFNRLLDKASRLRQLMGEVAMD---VSLGSALE 186
+ KCPLY +G +V E D VE +FNRLL+ S L + ++ VSLG ALE
Sbjct: 357 KQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQALE 413
>pdb|2HKO|A Chain A, Crystal Structure Of Lsd1
Length = 664
Score = 243 bits (621), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 130/305 (42%), Positives = 183/305 (60%), Gaps = 25/305 (8%)
Query: 202 NLFNWHLANLEYXXXXXXXXXXXXFWDQDDPYDMGGDHCFLPGGNGRLVQALVENVPILY 261
+ +WH ANLE+ WDQDD ++ G H + G + AL E + I
Sbjct: 356 QILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKL 415
Query: 262 EKTVHTIRYGSDGVQVLA-----GSQVF--EGDMVLCTVPLGVLKSG--SIKFIPELPQR 312
V ++Y + G +V+A SQ F + D VLCT+PLGVLK +++F+P LP+
Sbjct: 416 NTAVRQVQYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEW 475
Query: 313 KLDAIKRLGYGLLNKVAMLFPYVFWETDLDTFGHLTDDSSSRGEFFLFYSYATVAGGPLL 372
K A++R+G+G LNKV + F VFW+ ++ FGH+ ++SRGE FLF++ + P+L
Sbjct: 476 KTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWN---LYKAPIL 532
Query: 373 IALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSY 432
+ALVAGEAA E++ V + L ILKGI+ VP+P +TV +RW DP++ GSY
Sbjct: 533 LALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSA--VPQPKETVVSRWRADPWARGSY 590
Query: 433 SNVAVGASGDDYDIMAESVGDG-----------RLFFAGEATIRRYPATMHGAFLSGLRE 481
S VA G+SG+DYD+MA+ + G RLFFAGE TIR YPAT+HGA LSGLRE
Sbjct: 591 SYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLRE 650
Query: 482 TAKMA 486
++A
Sbjct: 651 AGRIA 655
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 89/178 (50%), Gaps = 14/178 (7%)
Query: 13 LLDSAYNYLVSNGYINFGVAPEIKEKIPVEPSSNKXXXXXXXXXXXXXXXXXXXXXXXFR 72
L+ ++YL +G INFG+ IK P+ P+
Sbjct: 77 LVHRVHSYLERHGLINFGIYKRIK---PL-PTKKTGKVIIIGSGVSGLAAARQLQSFGMD 132
Query: 73 VTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLGSLLHKV 132
VT+LE R R GGRV T + GN + ADLG V+TG GNP+ +++KQ+ L K+
Sbjct: 133 VTLLEARDRVGGRVATFR----KGNYV---ADLGAMVVTGLGGNPMAVVSKQVNMELAKI 185
Query: 133 RDKCPLYRLDGNSVDPEIDMKVEADFNRLLDKASRLRQLMGEVAMD---VSLGSALET 187
+ KCPLY +G +V E D VE +FNRLL+ S L + ++ VSLG ALE
Sbjct: 186 KQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQALEV 243
>pdb|1B37|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1H81|A Chain A, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|B Chain B, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|C Chain C, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H82|A Chain A, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|B Chain B, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|C Chain C, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H83|A Chain A, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|B Chain B, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|C Chain C, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H84|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H86|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
Length = 472
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 116/239 (48%), Gaps = 7/239 (2%)
Query: 263 KTVHTIRYGSDGVQV-LAGSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLG 321
K V I+Y GV V + V+ D V+ + LGVL+S I+F P+LP K+ AI +
Sbjct: 235 KVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFD 294
Query: 322 YGLLNKVAMLFPYVFWETDLDTFGHLTDDSSSRGEFFLFYSYA-TVAGGPLLIALVAGEA 380
+ K+ + FP FW L SS RG + ++ + +L+ V E
Sbjct: 295 MAVYTKIFLKFPRKFWPEGKGREFFLY-ASSRRGYYGVWQEFEKQYPDANVLLVTVTDEE 353
Query: 381 AHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGAS 440
+ + E +++Q+L+ ++ G +VP+ + RW D F G++SN VG +
Sbjct: 354 SRRIEQQSDEQTKAEIMQVLRKMF--PGKDVPDATDILVPRWWSDRFYKGTFSNWPVGVN 411
Query: 441 GDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGLRETAKMAHCANARALRMKVK 499
+YD + V GR++F GE T Y +HGA+LSG+ + +CA + + V+
Sbjct: 412 RYEYDQLRAPV--GRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILINCAQKKMCKYHVQ 468
>pdb|3KPF|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KPF|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KU9|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3KU9|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3L1R|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
pdb|3L1R|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
Length = 478
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 115/239 (48%), Gaps = 7/239 (2%)
Query: 263 KTVHTIRYGSDGVQV-LAGSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLG 321
K V I+Y GV V + V+ D V+ + LGVL+S I+F P+LP K+ AI +
Sbjct: 235 KVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFD 294
Query: 322 YGLLNKVAMLFPYVFWETDLDTFGHLTDDSSSRGEFFLFYSYA-TVAGGPLLIALVAGEA 380
+ + + FP FW L SS RG + ++ + +L+ V E
Sbjct: 295 MAVYTMIFLKFPRKFWPEGKGREFFLY-ASSRRGYYGVWQEFEKQYPDANVLLVTVTDEE 353
Query: 381 AHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGAS 440
+ + E +++Q+L+ ++ G +VP+ + RW D F G++SN VG +
Sbjct: 354 SRRIEQQSDEQTKAEIMQVLRKMF--PGKDVPDATDILVPRWWSDRFYKGTFSNWPVGVN 411
Query: 441 GDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGLRETAKMAHCANARALRMKVK 499
+YD + V GR++F GE T Y +HGA+LSG+ + +CA + + V+
Sbjct: 412 RYEYDQLRAPV--GRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILINCAQKKMCKYHVQ 468
>pdb|2XFO|A Chain A, Tranylcypromine-Inhibited Human Monoamine Oxidase B
Ile199ala Mutant In Complex With 2-(2-Benzofuranyl)-2-
Imidazoline
pdb|2XFO|B Chain B, Tranylcypromine-Inhibited Human Monoamine Oxidase B
Ile199ala Mutant In Complex With 2-(2-Benzofuranyl)-2-
Imidazoline
Length = 520
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 102/485 (21%), Positives = 168/485 (34%), Gaps = 69/485 (14%)
Query: 71 FRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLG---- 126
V VLE R R GGR YT + N+ DLGGS + G N + LAK+LG
Sbjct: 28 LNVVVLEARDRVGGRTYTLR------NQKVKYVDLGGSYV-GPTQNRILRLAKELGLETY 80
Query: 127 ------SLLHKVRDKCPLYRLDGNSVDPEIDMKVEADFNRLLDKASRLRQLMGEVAMDVS 180
L+H V+ K +R V I +F R +D R E+ D
Sbjct: 81 KVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGR------EIPSDAP 134
Query: 181 LGSALETFW----------RVYWDSGNAEAMNLFNWHLANLEYXXXXXXXXXXXXFW--- 227
+ L W ++ W + LF NL W
Sbjct: 135 WKAPLAEEWDNMTMKELLDKLCWTESAKQLATLF----VNLCVTAETHEVSALWFLWYVK 190
Query: 228 -----DQDDPYDMGGDHCFLPGGNGRLVQALVENV--PILYEKTVHTIRYGSDGVQV-LA 279
+ GG GG+G++ + +++ + + E+ V I + V V
Sbjct: 191 QCGGTTRIASTTNGGQERKFVGGSGQVSERIMDLLGDRVKLERPVIYIDQTRENVLVETL 250
Query: 280 GSQVFEGDMVLCTVP--LGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFW 337
+++E V+ +P LG+ I F P LP + I R+ G + K + + FW
Sbjct: 251 NHEMYEAKYVISAIPPTLGM----KIHFNPPLPMMRNQMITRVPLGSVIKCIVYYKEPFW 306
Query: 338 ETDLDTFGHLTDDSSSRGEFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVL 397
D G + D + ++ + A K + + + K+
Sbjct: 307 RKK-DYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLARLTKEERLKKLC 365
Query: 398 QILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLF 457
++ + + EP+ W + +S G Y+ Y + D R++
Sbjct: 366 ELYAKVL--GSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVD-RIY 422
Query: 458 FAGEATIRRYPATMHGAFLSGLRETAKMAHCANARALRMKVKVGKIPSKNAYSCASALTD 517
FAG T + M GA +G R ++ H +GKIP + D
Sbjct: 423 FAGTETATHWSGYMEGAVEAGERAAREILHA-----------MGKIPEDEIWQSEPESVD 471
Query: 518 LFREP 522
+ +P
Sbjct: 472 VPAQP 476
>pdb|2C75|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C75|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 102/485 (21%), Positives = 168/485 (34%), Gaps = 69/485 (14%)
Query: 71 FRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLG---- 126
V VLE R R GGR YT + N+ DLGGS + G N + LAK+LG
Sbjct: 28 LNVVVLEARDRVGGRTYTLR------NQKVKYVDLGGSYV-GPTQNRILRLAKELGLETY 80
Query: 127 ------SLLHKVRDKCPLYRLDGNSVDPEIDMKVEADFNRLLDKASRLRQLMGEVAMDVS 180
L+H V+ K +R V I +F R +D R E+ D
Sbjct: 81 KVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGR------EIPSDAP 134
Query: 181 LGSALETFW----------RVYWDSGNAEAMNLFNWHLANLEYXXXXXXXXXXXXFW--- 227
+ L W ++ W + LF NL W
Sbjct: 135 WKAPLAEEWDNMTMKELLDKLCWTESAKQLATLF----VNLCVTAETHEVSALWFLWYVK 190
Query: 228 -----DQDDPYDMGGDHCFLPGGNGRLVQALVENV--PILYEKTVHTIRYGSDGVQV-LA 279
+ GG GG+G++ + +++ + + E+ V I + V V
Sbjct: 191 QCGGTTRIISTTNGGQERKFVGGSGQVSERIMDLLGDRVKLERPVIYIDQTRENVLVETL 250
Query: 280 GSQVFEGDMVLCTVP--LGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFW 337
+++E V+ +P LG+ I F P LP + I R+ G + K + + FW
Sbjct: 251 NHEMYEAKYVISAIPPTLGM----KIHFNPPLPMMRNQMITRVPLGSVIKCIVYYKEPFW 306
Query: 338 ETDLDTFGHLTDDSSSRGEFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVL 397
D G + D + ++ + A K + + + K+
Sbjct: 307 RKK-DYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLARLTKEERLKKLC 365
Query: 398 QILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLF 457
++ + + EP+ W + +S G Y+ Y + D R++
Sbjct: 366 ELYAKVL--GSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVD-RIY 422
Query: 458 FAGEATIRRYPATMHGAFLSGLRETAKMAHCANARALRMKVKVGKIPSKNAYSCASALTD 517
FAG T + M GA +G R ++ H +GKIP + D
Sbjct: 423 FAGTETATHWSGLMEGAVEAGERAAREILHA-----------MGKIPEDEIWQSEPESVD 471
Query: 518 LFREP 522
+ +P
Sbjct: 472 VPAQP 476
>pdb|1GOS|A Chain A, Human Monoamine Oxidase B
pdb|1GOS|B Chain B, Human Monoamine Oxidase B
pdb|1OJ9|A Chain A, Human Monoamine Oxidase B In Complex With
1,4-Diphenyl-2-Butene
pdb|1OJ9|B Chain B, Human Monoamine Oxidase B In Complex With
1,4-Diphenyl-2-Butene
pdb|1OJA|A Chain A, Human Monoamine Oxidase B In Complex With Isatin
pdb|1OJA|B Chain B, Human Monoamine Oxidase B In Complex With Isatin
pdb|1OJC|A Chain A, Human Monoamine Oxidase B In Complex With
N-(2-Aminoethyl)-P-Chlorobenzamide
pdb|1OJC|B Chain B, Human Monoamine Oxidase B In Complex With
N-(2-Aminoethyl)-P-Chlorobenzamide
pdb|1OJD|A Chain A, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|B Chain B, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|C Chain C, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|D Chain D, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|E Chain E, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|F Chain F, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|G Chain G, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|H Chain H, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|I Chain I, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|L Chain L, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1S2Q|A Chain A, Crystal Structure Of Maob In Complex With
N-Propargyl-1(R)-Aminoindan (Rasagiline)
pdb|1S2Q|B Chain B, Crystal Structure Of Maob In Complex With
N-Propargyl-1(R)-Aminoindan (Rasagiline)
pdb|1S2Y|A Chain A, Crystal Structure Of Maob In Complex With
N-propargyl-1(s)- Aminoindan
pdb|1S2Y|B Chain B, Crystal Structure Of Maob In Complex With
N-propargyl-1(s)- Aminoindan
pdb|1S3B|A Chain A, Crystal Structure Of Maob In Complex With N-Methyl-N-
Propargyl-1(R)-Aminoindan
pdb|1S3B|B Chain B, Crystal Structure Of Maob In Complex With N-Methyl-N-
Propargyl-1(R)-Aminoindan
pdb|1S3E|A Chain A, Crystal Structure Of Maob In Complex With 6-Hydroxy-N-
Propargyl-1(R)-Aminoindan
pdb|1S3E|B Chain B, Crystal Structure Of Maob In Complex With 6-Hydroxy-N-
Propargyl-1(R)-Aminoindan
pdb|2BK3|A Chain A, Human Monoamine Oxidase B In Complex With Farnesol
pdb|2BK3|B Chain B, Human Monoamine Oxidase B In Complex With Farnesol
pdb|2BYB|A Chain A, Human Monoamine Oxidase B In Complex With Deprenyl
pdb|2BYB|B Chain B, Human Monoamine Oxidase B In Complex With Deprenyl
pdb|2C64|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C64|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C65|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C65|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C66|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C66|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C67|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C67|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C70|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C70|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2V5Z|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor Safinamide
pdb|2V5Z|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor Safinamide
pdb|2V60|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor
7-(3-Chlorobenzyloxy)-4-Carboxaldehyde-Coumarin
pdb|2V60|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor
7-(3-Chlorobenzyloxy)-4-Carboxaldehyde-Coumarin
pdb|2V61|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor 7-(3-Chlorobenzyloxy)-4-(Methylamino)methyl-
Coumarin
pdb|2V61|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor 7-(3-Chlorobenzyloxy)-4-(Methylamino)methyl-
Coumarin
pdb|2VRL|A Chain A, Structure Of Human Mao B In Complex With Benzylhydrazine
pdb|2VRL|B Chain B, Structure Of Human Mao B In Complex With Benzylhydrazine
pdb|2VRM|A Chain A, Structure Of Human Mao B In Complex With
Phenyethylhydrazine
pdb|2VRM|B Chain B, Structure Of Human Mao B In Complex With
Phenyethylhydrazine
pdb|2VZ2|A Chain A, Human Mao B In Complex With Mofegiline
pdb|2VZ2|B Chain B, Human Mao B In Complex With Mofegiline
pdb|2XCG|A Chain A, Tranylcypromine-Inhibited Human Monoamine Oxidase B In
Complex With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XCG|B Chain B, Tranylcypromine-Inhibited Human Monoamine Oxidase B In
Complex With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFN|A Chain A, Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl) -2-Imidazoline
pdb|2XFN|B Chain B, Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl) -2-Imidazoline
pdb|2XFP|A Chain A, Isatin-Inhibited Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFP|B Chain B, Isatin-Inhibited Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFQ|A Chain A, Rasagiline-Inhibited Human Monoamine Oxidase B In Complex
With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFQ|B Chain B, Rasagiline-Inhibited Human Monoamine Oxidase B In Complex
With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|3PO7|A Chain A, Human Monoamine Oxidase B In Complex With Zonisamide
pdb|3PO7|B Chain B, Human Monoamine Oxidase B In Complex With Zonisamide
pdb|4A79|A Chain A, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Pioglitazone
pdb|4A79|B Chain B, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Pioglitazone
pdb|4A7A|A Chain A, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Rosiglitazone
pdb|4A7A|B Chain B, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Rosiglitazone
Length = 520
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 102/485 (21%), Positives = 168/485 (34%), Gaps = 69/485 (14%)
Query: 71 FRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLG---- 126
V VLE R R GGR YT + N+ DLGGS + G N + LAK+LG
Sbjct: 28 LNVVVLEARDRVGGRTYTLR------NQKVKYVDLGGSYV-GPTQNRILRLAKELGLETY 80
Query: 127 ------SLLHKVRDKCPLYRLDGNSVDPEIDMKVEADFNRLLDKASRLRQLMGEVAMDVS 180
L+H V+ K +R V I +F R +D R E+ D
Sbjct: 81 KVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGR------EIPSDAP 134
Query: 181 LGSALETFW----------RVYWDSGNAEAMNLFNWHLANLEYXXXXXXXXXXXXFW--- 227
+ L W ++ W + LF NL W
Sbjct: 135 WKAPLAEEWDNMTMKELLDKLCWTESAKQLATLF----VNLCVTAETHEVSALWFLWYVK 190
Query: 228 -----DQDDPYDMGGDHCFLPGGNGRLVQALVENV--PILYEKTVHTIRYGSDGVQV-LA 279
+ GG GG+G++ + +++ + + E+ V I + V V
Sbjct: 191 QCGGTTRIISTTNGGQERKFVGGSGQVSERIMDLLGDRVKLERPVIYIDQTRENVLVETL 250
Query: 280 GSQVFEGDMVLCTVP--LGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFW 337
+++E V+ +P LG+ I F P LP + I R+ G + K + + FW
Sbjct: 251 NHEMYEAKYVISAIPPTLGM----KIHFNPPLPMMRNQMITRVPLGSVIKCIVYYKEPFW 306
Query: 338 ETDLDTFGHLTDDSSSRGEFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVL 397
D G + D + ++ + A K + + + K+
Sbjct: 307 RKK-DYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLARLTKEERLKKLC 365
Query: 398 QILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLF 457
++ + + EP+ W + +S G Y+ Y + D R++
Sbjct: 366 ELYAKVL--GSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVD-RIY 422
Query: 458 FAGEATIRRYPATMHGAFLSGLRETAKMAHCANARALRMKVKVGKIPSKNAYSCASALTD 517
FAG T + M GA +G R ++ H +GKIP + D
Sbjct: 423 FAGTETATHWSGYMEGAVEAGERAAREILHA-----------MGKIPEDEIWQSEPESVD 471
Query: 518 LFREP 522
+ +P
Sbjct: 472 VPAQP 476
>pdb|2C72|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C72|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 102/485 (21%), Positives = 168/485 (34%), Gaps = 69/485 (14%)
Query: 71 FRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLG---- 126
V VLE R R GGR YT + N+ DLGGS + G N + LAK+LG
Sbjct: 28 LNVVVLEARDRVGGRTYTLR------NQKVKYVDLGGSYV-GPTQNRILRLAKELGLETY 80
Query: 127 ------SLLHKVRDKCPLYRLDGNSVDPEIDMKVEADFNRLLDKASRLRQLMGEVAMDVS 180
L+H V+ K +R V I +F R +D R E+ D
Sbjct: 81 KVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGR------EIPSDAP 134
Query: 181 LGSALETFW----------RVYWDSGNAEAMNLFNWHLANLEYXXXXXXXXXXXXFW--- 227
+ L W ++ W + LF NL W
Sbjct: 135 WKAPLAEEWDNMTMKELLDKLCWTESAKQLATLF----VNLCVTAETHEVSALWFLWYVK 190
Query: 228 -----DQDDPYDMGGDHCFLPGGNGRLVQALVENV--PILYEKTVHTIRYGSDGVQV-LA 279
+ GG GG+G++ + +++ + + E+ V I + V V
Sbjct: 191 QCGGTTRIISTTNGGQERKFVGGSGQVSERIMDLLGDRVKLERPVIYIDQTRENVLVETL 250
Query: 280 GSQVFEGDMVLCTVP--LGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFW 337
+++E V+ +P LG+ I F P LP + I R+ G + K + + FW
Sbjct: 251 NHEMYEAKYVISAIPPTLGM----KIHFNPPLPMMRNQMITRVPLGSVIKCIVYYKEPFW 306
Query: 338 ETDLDTFGHLTDDSSSRGEFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVL 397
D G + D + ++ + A K + + + K+
Sbjct: 307 RKK-DYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLARLTKEERLKKLC 365
Query: 398 QILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLF 457
++ + + EP+ W + +S G Y+ Y + D R++
Sbjct: 366 ELYAKVL--GSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVD-RIY 422
Query: 458 FAGEATIRRYPATMHGAFLSGLRETAKMAHCANARALRMKVKVGKIPSKNAYSCASALTD 517
FAG T + M GA +G R ++ H +GKIP + D
Sbjct: 423 FAGTETATHWSGHMEGAVEAGERAAREILHA-----------MGKIPEDEIWQSEPESVD 471
Query: 518 LFREP 522
+ +P
Sbjct: 472 VPAQP 476
>pdb|2XFU|A Chain A, Human Monoamine Oxidase B With Tranylcypromine
pdb|2XFU|B Chain B, Human Monoamine Oxidase B With Tranylcypromine
Length = 519
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 102/485 (21%), Positives = 168/485 (34%), Gaps = 69/485 (14%)
Query: 71 FRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLG---- 126
V VLE R R GGR YT + N+ DLGGS + G N + LAK+LG
Sbjct: 27 LNVVVLEARDRVGGRTYTLR------NQKVKYVDLGGSYV-GPTQNRILRLAKELGLETY 79
Query: 127 ------SLLHKVRDKCPLYRLDGNSVDPEIDMKVEADFNRLLDKASRLRQLMGEVAMDVS 180
L+H V+ K +R V I +F R +D R E+ D
Sbjct: 80 KVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGR------EIPSDAP 133
Query: 181 LGSALETFW----------RVYWDSGNAEAMNLFNWHLANLEYXXXXXXXXXXXXFW--- 227
+ L W ++ W + LF NL W
Sbjct: 134 WKAPLAEEWDNMTMKELLDKLCWTESAKQLATLF----VNLCVTAETHEVSALWFLWYVK 189
Query: 228 -----DQDDPYDMGGDHCFLPGGNGRLVQALVENV--PILYEKTVHTIRYGSDGVQV-LA 279
+ GG GG+G++ + +++ + + E+ V I + V V
Sbjct: 190 QCGGTTRIISTTNGGQERKFVGGSGQVSERIMDLLGDRVKLERPVIYIDQTRENVLVETL 249
Query: 280 GSQVFEGDMVLCTVP--LGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFW 337
+++E V+ +P LG+ I F P LP + I R+ G + K + + FW
Sbjct: 250 NHEMYEAKYVISAIPPTLGM----KIHFNPPLPMMRNQMITRVPLGSVIKCIVYYKEPFW 305
Query: 338 ETDLDTFGHLTDDSSSRGEFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVL 397
D G + D + ++ + A K + + + K+
Sbjct: 306 RKK-DYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLARLTKEERLKKLC 364
Query: 398 QILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLF 457
++ + + EP+ W + +S G Y+ Y + D R++
Sbjct: 365 ELYAKVL--GSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVD-RIY 421
Query: 458 FAGEATIRRYPATMHGAFLSGLRETAKMAHCANARALRMKVKVGKIPSKNAYSCASALTD 517
FAG T + M GA +G R ++ H +GKIP + D
Sbjct: 422 FAGTETATHWSGYMEGAVEAGERAAREILHA-----------MGKIPEDEIWQSEPESVD 470
Query: 518 LFREP 522
+ +P
Sbjct: 471 VPAQP 475
>pdb|2C76|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C76|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 102/485 (21%), Positives = 168/485 (34%), Gaps = 69/485 (14%)
Query: 71 FRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLG---- 126
V VLE R R GGR YT + N+ DLGGS + G N + LAK+LG
Sbjct: 28 LNVVVLEARDRVGGRTYTLR------NQKVKYVDLGGSYV-GPTQNRILRLAKELGLETY 80
Query: 127 ------SLLHKVRDKCPLYRLDGNSVDPEIDMKVEADFNRLLDKASRLRQLMGEVAMDVS 180
L+H V+ K +R V I +F R +D R E+ D
Sbjct: 81 KVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGR------EIPSDAP 134
Query: 181 LGSALETFW----------RVYWDSGNAEAMNLFNWHLANLEYXXXXXXXXXXXXFW--- 227
+ L W ++ W + LF NL W
Sbjct: 135 WKAPLAEEWDNMTMKELLDKLCWTESAKQLATLF----VNLCVTAETHEVSALWFLWYVK 190
Query: 228 -----DQDDPYDMGGDHCFLPGGNGRLVQALVENV--PILYEKTVHTIRYGSDGVQV-LA 279
+ GG GG+G++ + +++ + + E+ V I + V V
Sbjct: 191 QCGGTTRIISTTNGGQERKFVGGSGQVSERIMDLLGDRVKLERPVIYIDQTRENVLVETL 250
Query: 280 GSQVFEGDMVLCTVP--LGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFW 337
+++E V+ +P LG+ I F P LP + I R+ G + K + + FW
Sbjct: 251 NHEMYEAKYVISAIPPTLGM----KIHFNPPLPMMRNQMITRVPLGSVIKCIVYYKEPFW 306
Query: 338 ETDLDTFGHLTDDSSSRGEFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVL 397
D G + D + ++ + A K + + + K+
Sbjct: 307 RKK-DYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLARLTKEERLKKLC 365
Query: 398 QILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLF 457
++ + + EP+ W + +S G Y+ Y + D R++
Sbjct: 366 ELYAKVL--GSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVD-RIY 422
Query: 458 FAGEATIRRYPATMHGAFLSGLRETAKMAHCANARALRMKVKVGKIPSKNAYSCASALTD 517
FAG T + M GA +G R ++ H +GKIP + D
Sbjct: 423 FAGTETATHWSGWMEGAVEAGERAAREILHA-----------MGKIPEDEIWQSEPESVD 471
Query: 518 LFREP 522
+ +P
Sbjct: 472 VPAQP 476
>pdb|2C73|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C73|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 102/485 (21%), Positives = 168/485 (34%), Gaps = 69/485 (14%)
Query: 71 FRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLG---- 126
V VLE R R GGR YT + N+ DLGGS + G N + LAK+LG
Sbjct: 28 LNVVVLEARDRVGGRTYTLR------NQKVKYVDLGGSYV-GPTQNRILRLAKELGLETY 80
Query: 127 ------SLLHKVRDKCPLYRLDGNSVDPEIDMKVEADFNRLLDKASRLRQLMGEVAMDVS 180
L+H V+ K +R V I +F R +D R E+ D
Sbjct: 81 KVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGR------EIPSDAP 134
Query: 181 LGSALETFW----------RVYWDSGNAEAMNLFNWHLANLEYXXXXXXXXXXXXFW--- 227
+ L W ++ W + LF NL W
Sbjct: 135 WKAPLAEEWDNMTMKELLDKLCWTESAKQLATLF----VNLCVTAETHEVSALWFLWYVK 190
Query: 228 -----DQDDPYDMGGDHCFLPGGNGRLVQALVENV--PILYEKTVHTIRYGSDGVQV-LA 279
+ GG GG+G++ + +++ + + E+ V I + V V
Sbjct: 191 QCGGTTRIISTTNGGQERKFVGGSGQVSERIMDLLGDRVKLERPVIYIDQTRENVLVETL 250
Query: 280 GSQVFEGDMVLCTVP--LGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFW 337
+++E V+ +P LG+ I F P LP + I R+ G + K + + FW
Sbjct: 251 NHEMYEAKYVISAIPPTLGM----KIHFNPPLPMMRNQMITRVPLGSVIKCIVYYKEPFW 306
Query: 338 ETDLDTFGHLTDDSSSRGEFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVL 397
D G + D + ++ + A K + + + K+
Sbjct: 307 RKK-DYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLARLTKEERLKKLC 365
Query: 398 QILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLF 457
++ + + EP+ W + +S G Y+ Y + D R++
Sbjct: 366 ELYAKVL--GSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVD-RIY 422
Query: 458 FAGEATIRRYPATMHGAFLSGLRETAKMAHCANARALRMKVKVGKIPSKNAYSCASALTD 517
FAG T + M GA +G R ++ H +GKIP + D
Sbjct: 423 FAGTETATHWSGFMEGAVEAGERAAREILHA-----------MGKIPEDEIWQSEPESVD 471
Query: 518 LFREP 522
+ +P
Sbjct: 472 VPAQP 476
>pdb|2BK4|A Chain A, Human Monoamine Oxidase B: I199f Mutant In Complex With
Rasagiline
pdb|2BK4|B Chain B, Human Monoamine Oxidase B: I199f Mutant In Complex With
Rasagiline
pdb|2BK5|A Chain A, Human Monoamine Oxidase B: I199f Mutant In Complex With
Isatin
pdb|2BK5|B Chain B, Human Monoamine Oxidase B: I199f Mutant In Complex With
Isatin
Length = 520
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 102/485 (21%), Positives = 167/485 (34%), Gaps = 69/485 (14%)
Query: 71 FRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLG---- 126
V VLE R R GGR YT + N+ DLGGS + G N + LAK+LG
Sbjct: 28 LNVVVLEARDRVGGRTYTLR------NQKVKYVDLGGSYV-GPTQNRILRLAKELGLETY 80
Query: 127 ------SLLHKVRDKCPLYRLDGNSVDPEIDMKVEADFNRLLDKASRLRQLMGEVAMDVS 180
L+H V+ K +R V I +F R +D R E+ D
Sbjct: 81 KVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGR------EIPSDAP 134
Query: 181 LGSALETFW----------RVYWDSGNAEAMNLFNWHLANLEYXXXXXXXXXXXXFWDQD 230
+ L W ++ W + LF NL W
Sbjct: 135 WKAPLAEEWDNMTMKELLDKLCWTESAKQLATLF----VNLCVTAETHEVSALWFLWYVK 190
Query: 231 D--------PYDMGGDHCFLPGGNGRLVQALVENV--PILYEKTVHTIRYGSDGVQV-LA 279
GG GG+G++ + +++ + + E+ V I + V V
Sbjct: 191 QCGGTTRIFSTTNGGQERKFVGGSGQVSERIMDLLGDRVKLERPVIYIDQTRENVLVETL 250
Query: 280 GSQVFEGDMVLCTVP--LGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFW 337
+++E V+ +P LG+ I F P LP + I R+ G + K + + FW
Sbjct: 251 NHEMYEAKYVISAIPPTLGM----KIHFNPPLPMMRNQMITRVPLGSVIKCIVYYKEPFW 306
Query: 338 ETDLDTFGHLTDDSSSRGEFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVL 397
D G + D + ++ + A K + + + K+
Sbjct: 307 RKK-DYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLARLTKEERLKKLC 365
Query: 398 QILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLF 457
++ + + EP+ W + +S G Y+ Y + D R++
Sbjct: 366 ELYAKVL--GSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVD-RIY 422
Query: 458 FAGEATIRRYPATMHGAFLSGLRETAKMAHCANARALRMKVKVGKIPSKNAYSCASALTD 517
FAG T + M GA +G R ++ H +GKIP + D
Sbjct: 423 FAGTETATHWSGYMEGAVEAGERAAREILHA-----------MGKIPEDEIWQSEPESVD 471
Query: 518 LFREP 522
+ +P
Sbjct: 472 VPAQP 476
>pdb|3ZYX|A Chain A, Crystal Structure Of Human Monoamine Oxidase B In Complex
With Methylene Blue And Bearing The Double Mutation
I199a- Y326a
pdb|3ZYX|B Chain B, Crystal Structure Of Human Monoamine Oxidase B In Complex
With Methylene Blue And Bearing The Double Mutation
I199a- Y326a
Length = 519
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 107/497 (21%), Positives = 173/497 (34%), Gaps = 93/497 (18%)
Query: 71 FRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLG---- 126
V VLE R R GGR YT + N+ DLGGS + G N + LAK+LG
Sbjct: 27 LNVVVLEARDRVGGRTYTLR------NQKVKYVDLGGSYV-GPTQNRILRLAKELGLETY 79
Query: 127 ------SLLHKVRDKCPLYRLDGNSVDPEIDMKVEADFNRLLDKASRLRQLMGEVAMDVS 180
L+H V+ K +R V I +F R +D R E+ D
Sbjct: 80 KVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGR------EIPSDAP 133
Query: 181 LGSALETFW----------RVYWDSGNAEAMNLFNWHLANLEYXXXXXXXXXXXXFW--- 227
+ L W ++ W + LF NL W
Sbjct: 134 WKAPLAEEWDNMTMKELLDKLCWTESAKQLATLF----VNLCVTAETHEVSALWFLWYVK 189
Query: 228 -----DQDDPYDMGGDHCFLPGGNGRLVQALVENV--PILYEKTVHTIRYGSDGVQV-LA 279
+ GG GG+G++ + +++ + + E+ V I + V V
Sbjct: 190 QCGGTTRIASTTNGGQERKFVGGSGQVSERIMDLLGDRVKLERPVIYIDQTRENVLVETL 249
Query: 280 GSQVFEGDMVLCTVP--LGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFW 337
+++E V+ +P LG+ I F P LP + I R+ G + K + + FW
Sbjct: 250 NHEMYEAKYVISAIPPTLGM----KIHFNPPLPMMRNQMITRVPLGSVIKCIVYYKEPFW 305
Query: 338 ETDLDTFGHLT------------DDSSSRGEFFLFYSYATVAGGPLLIALVAGEAAHKFE 385
D G + DD+ G +YA + G + A K
Sbjct: 306 RKK-DYCGTMIIDGEEAPVAATLDDTKPEG------NYAAIMG------FILAHKARKLA 352
Query: 386 SMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYD 445
+ + + K+ ++ + + EP+ W + +S G Y+ Y
Sbjct: 353 RLTKEERLKKLCELYAKVL--GSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYG 410
Query: 446 IMAESVGDGRLFFAGEATIRRYPATMHGAFLSGLRETAKMAHCANARALRMKVKVGKIPS 505
+ D R++FAG T + M GA +G R ++ H +GKIP
Sbjct: 411 RVLRQPVD-RIYFAGTETATHWSGYMEGAVEAGERAAREILHA-----------MGKIPE 458
Query: 506 KNAYSCASALTDLFREP 522
+ D+ +P
Sbjct: 459 DEIWQSEPESVDVPAQP 475
>pdb|4ECH|A Chain A, Yeast Polyamine Oxidase Fms1, H67q Mutant
pdb|4ECH|B Chain B, Yeast Polyamine Oxidase Fms1, H67q Mutant
Length = 516
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 107/480 (22%), Positives = 172/480 (35%), Gaps = 80/480 (16%)
Query: 75 VLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLGSLLHKVRD 134
VLE R R GGR+ T + G G + D+G S TL NPL + QL + D
Sbjct: 37 VLEARDRVGGRLQT--VTGYQGRKY----DIGASWHQDTLTNPLFLEEAQLS-----LND 85
Query: 135 KCPLYRLDGNS---VDPEIDMKVEADFNRLLDKASRLRQLMGEVAMDVSLGSALETFWRV 191
+ D ++ +D E +V+ D LL+ E+ LG + +F+++
Sbjct: 86 GRTRFVFDDDNFIYIDEERG-RVDHDKELLLEIVDNEMSKFAELEFHQHLGVSDCSFFQL 144
Query: 192 YWDSGNAEAMNLFN---WHLANLEYXXXXXXXXXXXXFWDQDDPYDMGGDHCFLPGGNG- 247
L N +L L +D + G + F +
Sbjct: 145 VMKYLLQRRQFLTNDQIRYLPQLCRYLELWHGLDWKLLSAKDTYFGHQGRNAFALNYDSV 204
Query: 248 --RLVQALVENVPILYEKTVHTIRYGSDGVQV-LAGSQVFEGDMVLCTVPLGVLK----- 299
R+ Q+ +N L + R S V V V+ D V+ TVP VL
Sbjct: 205 VQRIAQSFPQNWLKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLSVQP 264
Query: 300 ----SGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETD--------------- 340
G I+F P L DA ++ +G L KV F W +
Sbjct: 265 EKNLRGRIEFQPPLKPVIQDAFDKIHFGALGKVIFEFEECCWSNESSKIVTLANSTNEFV 324
Query: 341 --------LDTFGHLTDDSSSR--------GEFFLFYSYATVAGGPLLIALVAGEAAHKF 384
LD + + S+ + F + + G + L+ +
Sbjct: 325 EIVRNAENLDELDSMLEREDSQKHTSVTCWSQPLFFVNLSKSTGVASFMMLMQAPLTNHI 384
Query: 385 ESM------------PPTDAVTKVLQ---ILKGIYEPKGI-NVPEPI--QTVCTRWGGDP 426
ES+ P + + K L ++ G+ + I N +P+ + + W DP
Sbjct: 385 ESIREDKERLFSFFQPVLNKIMKCLDSEDVIDGMRPIENIANANKPVLRNIIVSNWTRDP 444
Query: 427 FSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGLRETAKMA 486
+S G+YS G D + + D R+ FAGE TI +GA+ SG RE +++
Sbjct: 445 YSRGAYSACFPGDDPVDMVVAMSNGQDSRIRFAGEHTIMDGAGCAYGAWESGRREATRIS 504
>pdb|1YY5|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1YY5|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|C Chain C, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|D Chain D, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
Length = 513
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 107/480 (22%), Positives = 172/480 (35%), Gaps = 80/480 (16%)
Query: 75 VLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLGSLLHKVRD 134
VLE R R GGR+ T + G G + D+G S TL NPL + QL + D
Sbjct: 37 VLEARDRVGGRLQT--VTGYQGRKY----DIGASWHHDTLTNPLFLEEAQLS-----LND 85
Query: 135 KCPLYRLDGNS---VDPEIDMKVEADFNRLLDKASRLRQLMGEVAMDVSLGSALETFWRV 191
+ D ++ +D E +V+ D LL+ E+ LG + +F+++
Sbjct: 86 GRTRFVFDDDNFIYIDEERG-RVDHDKELLLEIVDNEMSKFAELEFHQHLGVSDCSFFQL 144
Query: 192 YWDSGNAEAMNLFN---WHLANLEYXXXXXXXXXXXXFWDQDDPYDMGGDHCFLPGGNG- 247
L N +L L +D + G + F +
Sbjct: 145 VMKYLLQRRQFLTNDQIRYLPQLCRYLELWHGLDWKLLSAKDTYFGHQGRNAFALNYDSV 204
Query: 248 --RLVQALVENVPILYEKTVHTIRYGSDGVQV-LAGSQVFEGDMVLCTVPLGVLK----- 299
R+ Q+ +N L + R S V V V+ D V+ TVP VL
Sbjct: 205 VQRIAQSFPQNWLKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLSVQP 264
Query: 300 ----SGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETD--------------- 340
G I+F P L DA ++ +G L KV F W +
Sbjct: 265 EKNLRGRIEFQPPLKPVIQDAFDKIHFGALGKVIFEFEECCWSNESSKIVTLANSTNEFV 324
Query: 341 --------LDTFGHLTDDSSSR--------GEFFLFYSYATVAGGPLLIALVAGEAAHKF 384
LD + + S+ + F + + G + L+ +
Sbjct: 325 EIVRNAENLDELDSMLEREDSQKHTSVTCWSQPLFFVNLSKSTGVASFMMLMQAPLTNHI 384
Query: 385 ESM------------PPTDAVTKVLQ---ILKGIYEPKGI-NVPEPI--QTVCTRWGGDP 426
ES+ P + + K L ++ G+ + I N +P+ + + W DP
Sbjct: 385 ESIREDKERLFSFFQPVLNKIMKCLDSEDVIDGMRPIENIANANKPVLRNIIVSNWTRDP 444
Query: 427 FSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGLRETAKMA 486
+S G+YS G D + + D R+ FAGE TI +GA+ SG RE +++
Sbjct: 445 YSRGAYSACFPGDDPVDMVVAMSNGQDSRIRFAGEHTIMDGAGCAYGAWESGRREATRIS 504
>pdb|1Z6L|A Chain A, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|1Z6L|B Chain B, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|3BI2|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI2|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI4|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI4|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI5|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI5|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BNM|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNM|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNU|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3BNU|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3CN8|B Chain B, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CN8|A Chain A, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CND|B Chain B, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CND|A Chain A, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CNP|B Chain B, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNP|A Chain A, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNS|A Chain A, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNS|B Chain B, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNT|B Chain B, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
pdb|3CNT|A Chain A, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
Length = 516
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 107/480 (22%), Positives = 172/480 (35%), Gaps = 80/480 (16%)
Query: 75 VLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLGSLLHKVRD 134
VLE R R GGR+ T + G G + D+G S TL NPL + QL + D
Sbjct: 37 VLEARDRVGGRLQT--VTGYQGRKY----DIGASWHHDTLTNPLFLEEAQLS-----LND 85
Query: 135 KCPLYRLDGNS---VDPEIDMKVEADFNRLLDKASRLRQLMGEVAMDVSLGSALETFWRV 191
+ D ++ +D E +V+ D LL+ E+ LG + +F+++
Sbjct: 86 GRTRFVFDDDNFIYIDEERG-RVDHDKELLLEIVDNEMSKFAELEFHQHLGVSDCSFFQL 144
Query: 192 YWDSGNAEAMNLFN---WHLANLEYXXXXXXXXXXXXFWDQDDPYDMGGDHCFLPGGNG- 247
L N +L L +D + G + F +
Sbjct: 145 VMKYLLQRRQFLTNDQIRYLPQLCRYLELWHGLDWKLLSAKDTYFGHQGRNAFALNYDSV 204
Query: 248 --RLVQALVENVPILYEKTVHTIRYGSDGVQV-LAGSQVFEGDMVLCTVPLGVLK----- 299
R+ Q+ +N L + R S V V V+ D V+ TVP VL
Sbjct: 205 VQRIAQSFPQNWLKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLSVQP 264
Query: 300 ----SGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETD--------------- 340
G I+F P L DA ++ +G L KV F W +
Sbjct: 265 EKNLRGRIEFQPPLKPVIQDAFDKIHFGALGKVIFEFEECCWSNESSKIVTLANSTNEFV 324
Query: 341 --------LDTFGHLTDDSSSR--------GEFFLFYSYATVAGGPLLIALVAGEAAHKF 384
LD + + S+ + F + + G + L+ +
Sbjct: 325 EIVRNAENLDELDSMLEREDSQKHTSVTCWSQPLFFVNLSKSTGVASFMMLMQAPLTNHI 384
Query: 385 ESM------------PPTDAVTKVLQ---ILKGIYEPKGI-NVPEPI--QTVCTRWGGDP 426
ES+ P + + K L ++ G+ + I N +P+ + + W DP
Sbjct: 385 ESIREDKERLFSFFQPVLNKIMKCLDSEDVIDGMRPIENIANANKPVLRNIIVSNWTRDP 444
Query: 427 FSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGLRETAKMA 486
+S G+YS G D + + D R+ FAGE TI +GA+ SG RE +++
Sbjct: 445 YSRGAYSACFPGDDPVDMVVAMSNGQDSRIRFAGEHTIMDGAGCAYGAWESGRREATRIS 504
>pdb|3KVE|A Chain A, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|B Chain B, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|C Chain C, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|D Chain D, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
Length = 486
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 112/263 (42%), Gaps = 35/263 (13%)
Query: 244 GGNGRLVQALVENVPILYEKTVHTIRYGSDGVQVLAGSQVFEGD--------MVLCTVPL 295
GG +L ++ + + I+ + QV Q E D +++CT
Sbjct: 238 GGMDQLPTSMYRAIEEKVKFNARVIKIQQNANQVTVTYQTPEKDTSSNTADYVIVCTTSR 297
Query: 296 GVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDTFGHLTDDSSSRG 355
+ I+F P LP +K A++ + Y K+ + FWE D G T D SR
Sbjct: 298 AARR---IQFEPPLPPKKQHALRSVHYRSGTKIFLTCSSKFWEDDGIHGGKSTTDLPSRF 354
Query: 356 EFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYE-PKGINVPEP 414
++ ++++T G ++IA G+ A+ F+++ D V L I++ PK E
Sbjct: 355 IYYPNHNFSTGVG--VIIAYGIGDDANFFQALKFKDCADIVFNDLSLIHQLPK-----EE 407
Query: 415 IQTVC-----TRWGGDPFSLGSYSNVAVGASGDDYDIMAESVG--DGRLFFAGEATIRRY 467
IQ+ C +W D +++G+ + + + +E++ GR+FFAGE Y
Sbjct: 408 IQSFCYPSMIQKWSLDKYAMGAITTF----TPYQFQRFSEALTAPQGRIFFAGE-----Y 458
Query: 468 PATMHGAFLSGLRETAKMAHCAN 490
A HG S ++ A N
Sbjct: 459 TAEAHGWIDSTIKSGLTAARDVN 481
>pdb|4GDP|A Chain A, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|B Chain B, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|C Chain C, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|D Chain D, Yeast Polyamine Oxidase Fms1, N195a Mutant
Length = 516
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 107/480 (22%), Positives = 171/480 (35%), Gaps = 80/480 (16%)
Query: 75 VLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLGSLLHKVRD 134
VLE R R GGR+ T + G G + D+G S TL NPL + QL + D
Sbjct: 37 VLEARDRVGGRLQT--VTGYQGRKY----DIGASWHHDTLTNPLFLEEAQLS-----LND 85
Query: 135 KCPLYRLDGNS---VDPEIDMKVEADFNRLLDKASRLRQLMGEVAMDVSLGSALETFWRV 191
+ D ++ +D E +V+ D LL+ E+ LG + +F+++
Sbjct: 86 GRTRFVFDDDNFIYIDEERG-RVDHDKELLLEIVDNEMSKFAELEFHQHLGVSDCSFFQL 144
Query: 192 YWDSGNAEAMNLFN---WHLANLEYXXXXXXXXXXXXFWDQDDPYDMGGDHCFLPGGNG- 247
L N +L L +D + G F +
Sbjct: 145 VMKYLLQRRQFLTNDQIRYLPQLCRYLELWHGLDWKLLSAKDTYFGHQGRAAFALNYDSV 204
Query: 248 --RLVQALVENVPILYEKTVHTIRYGSDGVQV-LAGSQVFEGDMVLCTVPLGVLK----- 299
R+ Q+ +N L + R S V V V+ D V+ TVP VL
Sbjct: 205 VQRIAQSFPQNWLKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLSVQP 264
Query: 300 ----SGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETD--------------- 340
G I+F P L DA ++ +G L KV F W +
Sbjct: 265 EKNLRGRIEFQPPLKPVIQDAFDKIHFGALGKVIFEFEECCWSNESSKIVTLANSTNEFV 324
Query: 341 --------LDTFGHLTDDSSSR--------GEFFLFYSYATVAGGPLLIALVAGEAAHKF 384
LD + + S+ + F + + G + L+ +
Sbjct: 325 EIVRNAENLDELDSMLEREDSQKHTSVTCWSQPLFFVNLSKSTGVASFMMLMQAPLTNHI 384
Query: 385 ESM------------PPTDAVTKVLQ---ILKGIYEPKGI-NVPEPI--QTVCTRWGGDP 426
ES+ P + + K L ++ G+ + I N +P+ + + W DP
Sbjct: 385 ESIREDKERLFSFFQPVLNKIMKCLDSEDVIDGMRPIENIANANKPVLRNIIVSNWTRDP 444
Query: 427 FSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGLRETAKMA 486
+S G+YS G D + + D R+ FAGE TI +GA+ SG RE +++
Sbjct: 445 YSRGAYSACFPGDDPVDMVVAMSNGQDSRIRFAGEHTIMDGAGCAYGAWESGRREATRIS 504
>pdb|4E0V|A Chain A, Structure Of L-Amino Acid Oxidase From The B. Jararacussu
Venom
pdb|4E0V|B Chain B, Structure Of L-Amino Acid Oxidase From The B. Jararacussu
Venom
Length = 497
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 102/244 (41%), Gaps = 31/244 (12%)
Query: 249 LVQALVENVPILYEKTVHTIRYGSDGVQVLAGSQVFEGDMVLCTVPLGVLKSGS-----I 303
+ QA+ E V + I+ D +V Q E + + T ++ + S I
Sbjct: 260 MYQAIQEKVHL----NARVIKIQQDVKEVTVTYQTSEKETLSVTADYVIVCTTSRAARRI 315
Query: 304 KFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDTFGHLTDDSSSRGEFFLFYSY 363
KF P LP +K A++ + Y K+ + FWE D G T D SR F++Y
Sbjct: 316 KFEPPLPPKKAHALRSVHYRSGTKIFLTCTKKFWEDDGIHGGKSTTDLPSR---FIYYPN 372
Query: 364 ATVAGGP-LLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYE-PKGINVPEPIQTVC-- 419
G ++IA G+ A+ FE++ D V+ L I++ PK E IQ +C
Sbjct: 373 HNFPNGVGVIIAYGIGDDANYFEALDFEDCGDIVINDLSLIHQLPK-----EEIQAICRP 427
Query: 420 ---TRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFL 476
RW D +++G + + + V R++FAGE Y A HG
Sbjct: 428 SMIQRWSLDKYAMGGITTFTPYQFQHFSEALTAPV--DRIYFAGE-----YTAQAHGWIA 480
Query: 477 SGLR 480
S ++
Sbjct: 481 STIK 484
>pdb|1RSG|A Chain A, Crystal Structure Of The Polyamine Oxidase Fms1 From Yeast
pdb|1RSG|B Chain B, Crystal Structure Of The Polyamine Oxidase Fms1 From Yeast
Length = 516
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 110/482 (22%), Positives = 171/482 (35%), Gaps = 84/482 (17%)
Query: 75 VLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLGSLLHKVRD 134
VLE R R GGR+ T + G G + D+G S TL NPL + QL + D
Sbjct: 37 VLEARDRVGGRLQT--VTGYQGRKY----DIGASWHHDTLTNPLFLEEAQLS-----LND 85
Query: 135 KCPLYRLDGNS---VDPEIDMKVEADFNRLLDKASRLRQLMGEVAMDVSLGSALETFWRV 191
+ D ++ +D E +V+ D LL+ E+ LG + +F+++
Sbjct: 86 GRTRFVFDDDNFIYIDEE-RGRVDHDKELLLEIVDNEXSKFAELEFHQHLGVSDCSFFQL 144
Query: 192 YWDSGNAEAMNLFN---WHLANLEYXXXXXXXXXXXXFWDQDDPYDMGGDHCFLPGGNG- 247
L N +L L +D + G + F +
Sbjct: 145 VXKYLLQRRQFLTNDQIRYLPQLCRYLELWHGLDWKLLSAKDTYFGHQGRNAFALNYDSV 204
Query: 248 --RLVQALVENVPILYEKTVHTIRYGSDGVQV-LAGSQVFEGDMVLCTVPLGVLK----- 299
R+ Q+ +N L + R S V V V+ D V+ TVP VL
Sbjct: 205 VQRIAQSFPQNWLKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLSVQP 264
Query: 300 ----SGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDL-------------- 341
G I+F P L DA ++ +G L KV F W +
Sbjct: 265 EKNLRGRIEFQPPLKPVIQDAFDKIHFGALGKVIFEFEECCWSNESSKIVTLANSTNEFV 324
Query: 342 -------------------DTFGHLTDDSSSRGEFFLFYSYATVAGGPLLIALVAGEAAH 382
D+ H + S+ FF+ S +T G L +
Sbjct: 325 EIVRNAENLDELDSXLEREDSQKHTSVTCWSQPLFFVNLSKST--GVASFXXLXQAPLTN 382
Query: 383 KFESM------------PPTDAVTKVLQ---ILKGIYEPKGI-NVPEPI--QTVCTRWGG 424
ES+ P + + K L ++ G + I N +P+ + + W
Sbjct: 383 HIESIREDKERLFSFFQPVLNKIXKCLDSEDVIDGXRPIENIANANKPVLRNIIVSNWTR 442
Query: 425 DPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGLRETAK 484
DP+S G+YS G D + + D R+ FAGE TI +GA+ SG RE +
Sbjct: 443 DPYSRGAYSACFPGDDPVDXVVAXSNGQDSRIRFAGEHTIXDGAGCAYGAWESGRREATR 502
Query: 485 MA 486
++
Sbjct: 503 IS 504
>pdb|1REO|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys Pallas
pdb|1TDK|A Chain A, L-amino Acid Oxidase From Agkistrodon Halys In Complex
With Suicide Substrate L-vinylglycine
pdb|1TDN|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys In Complex
With L-Leucine
pdb|1TDO|A Chain A, L-Amino Acid Oxidae From Agkistrodon Halys In Complex With
L- Phenylalanine
Length = 486
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 94/210 (44%), Gaps = 25/210 (11%)
Query: 288 MVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDTFGHL 347
+++CT + IKF P LP +K A++ + Y K+ + FWE + G
Sbjct: 290 VIVCTTSRATRR---IKFEPPLPPKKAHALRSVHYRSGTKIFLTCTKKFWEDEGIHGGKS 346
Query: 348 TDDSSSRGEFFLFY-SYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYE- 405
T D SR F++Y ++ +G ++IA G+ A+ F+++ D V+ L I++
Sbjct: 347 TTDLPSR---FIYYPNHNFTSGVGVIIAYGIGDDANFFQALDFKDCADIVINDLSLIHQL 403
Query: 406 PKGINVPEPIQTVC-----TRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAG 460
P+ E IQT C +W D +++G + + + SV R++FAG
Sbjct: 404 PR-----EEIQTFCYPSMIQKWSLDKYAMGGITTFTPYQFQHFSESLTASV--DRIYFAG 456
Query: 461 EATIRRYPATMHGAFLSGLRETAKMAHCAN 490
E T A HG S ++ + A N
Sbjct: 457 EHT-----AEAHGWIDSTIKSGLRAARDVN 481
>pdb|1F8R|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8S|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|E Chain E, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|F Chain F, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|G Chain G, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|H Chain H, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|2IID|A Chain A, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|B Chain B, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|C Chain C, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|D Chain D, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
Length = 498
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 91/210 (43%), Gaps = 25/210 (11%)
Query: 288 MVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDTFGHL 347
+++CT V IKF P L +K A++ + Y K+ + FWE D G
Sbjct: 290 VIVCTTSRAVR---LIKFNPPLLPKKAHALRSVHYRSGTKIFLTCTTKFWEDDGIHGGKS 346
Query: 348 TDDSSSRGEFFLFY-SYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYE- 405
T D SR F++Y ++ G ++IA G+ A+ F+++ D V L I++
Sbjct: 347 TTDLPSR---FIYYPNHNFTNGVGVIIAYGIGDDANFFQALDFKDCADIVFNDLSLIHQL 403
Query: 406 PKGINVPEPIQTVC-----TRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAG 460
PK + IQ+ C +W D +++G + D + S GR++FAG
Sbjct: 404 PK-----KDIQSFCYPSVIQKWSLDKYAMGGITTFTPYQFQHFSDPLTAS--QGRIYFAG 456
Query: 461 EATIRRYPATMHGAFLSGLRETAKMAHCAN 490
E Y A HG S ++ + A N
Sbjct: 457 E-----YTAQAHGWIDSTIKSGLRAARDVN 481
>pdb|2YG3|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Enzyme
pdb|2YG3|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Enzyme
pdb|2YG4|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Bound To Putrescine
pdb|2YG4|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Bound To Putrescine
Length = 453
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 89/389 (22%), Positives = 149/389 (38%), Gaps = 51/389 (13%)
Query: 73 VTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLGSLLHKV 132
V V+E R R GGR +T ++G A ++GG ++ + +L + +
Sbjct: 31 VAVIEARDRVGGRTWTDTIDG-------AVLEIGGQWVSPDQTALISLLDELGLKTFERY 83
Query: 133 RDKCPLY--------RLDGNSVDPEIDMKVEADFNRLLDKASRLR-QLMGEVAMDVSLGS 183
R+ +Y R G+S K E D RL+D+ L Q+ E L
Sbjct: 84 REGESVYISSAGERTRYTGDSFPTNETTKKEMD--RLIDEMDDLAAQIGAEEPWAHPLAR 141
Query: 184 ALETFWRVYW---DSGNAEAMNLFNWHLAN------------LEYXXXXXXXXXXXXFWD 228
L+T W S +AEA + +A L+ D
Sbjct: 142 DLDTVSFKQWLINQSDDAEARDNIGLFIAGGMLTKPAHSFSALQAVLMAASAGSFSHLVD 201
Query: 229 QD---DPYDMGGDHCFLPGGNGRLVQALVENVPILYEKTVHTIRYGSDGVQVLAGSQV-F 284
+D D +GG + + R+ +AL ++V V T+++ G VLA +
Sbjct: 202 EDFILDKRVIGG----MQQVSIRMAEALGDDV--FLNAPVRTVKWNESGATVLADGDIRV 255
Query: 285 EGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDTF 344
E V+ VP + I + P LP+R+ + GL+ KV ++ FW D
Sbjct: 256 EASRVILAVPPNLYSR--ISYDPPLPRRQHQMHQHQSLGLVIKVHAVYETPFWRED-GLS 312
Query: 345 GHLTDDSSSRGEFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIY 404
G S E + ++ G L+A V+ E K ++M A + IL +
Sbjct: 313 GTGFGASEVVQEVYDNTNHEDDRG--TLVAFVSDE---KADAMFELSAEERKATILASLA 367
Query: 405 EPKGINVPEPIQTVCTRWGGDPFSLGSYS 433
G EP+ + WG + ++ G+Y+
Sbjct: 368 RYLGPKAEEPVVYYESDWGSEEWTRGAYA 396
>pdb|2YG7|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c-A396t-Q431g Triple Mutant
pdb|2YG7|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c-A396t-Q431g Triple Mutant
Length = 453
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 89/389 (22%), Positives = 148/389 (38%), Gaps = 51/389 (13%)
Query: 73 VTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLGSLLHKV 132
V V+E R R GGR +T ++G A ++GG ++ + +L + +
Sbjct: 31 VAVIEARDRVGGRTWTDTIDG-------AVLEIGGQWVSPDQTALISLLDELGLKTFERY 83
Query: 133 RDKCPLY--------RLDGNSVDPEIDMKVEADFNRLLDKASRLR-QLMGEVAMDVSLGS 183
R+ +Y R G+S K E D RL+D+ L Q+ E L
Sbjct: 84 REGESVYISSAGERTRYTGDSFPTNETTKKEMD--RLIDEMDDLAAQIGAEEPWAHPLAR 141
Query: 184 ALETFWRVYW---DSGNAEAMNLFNWHLAN------------LEYXXXXXXXXXXXXFWD 228
L+T W S +AEA + +A L+ D
Sbjct: 142 DLDTVSFKQWLINQSDDAEARDNIGLFIAGGMLTKPAHSFSALQAVLMAASAGSFSHLVD 201
Query: 229 QD---DPYDMGGDHCFLPGGNGRLVQALVENVPILYEKTVHTIRYGSDGVQVLAGSQV-F 284
+D D +GG + + R+ +AL ++V V T+++ G VLA +
Sbjct: 202 EDFILDKRVIGG----MQQVSIRMAEALGDDV--FLNAPVRTVKWNESGATVLADGDIRV 255
Query: 285 EGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDTF 344
E V+ VP + I + P LP+R+ + GL+ KV ++ FW D
Sbjct: 256 EASRVILAVPPNLYSR--ISYDPPLPRRQHQMHQHQSLGLVIKVHAVYETPFWRED-GLS 312
Query: 345 GHLTDDSSSRGEFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIY 404
G S E + ++ G L+A V+ E K ++M A + IL +
Sbjct: 313 GTGFGASEVVQEVYDNTNHEDDRG--TLVAFVSDE---KADAMFELSAEERKATILASLA 367
Query: 405 EPKGINVPEPIQTVCTRWGGDPFSLGSYS 433
G EP+ + WG + ++ G Y+
Sbjct: 368 RYLGPKAEEPVVYYESDWGSEEWTRGCYT 396
>pdb|2YG5|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c Mutant
Length = 453
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 89/389 (22%), Positives = 148/389 (38%), Gaps = 51/389 (13%)
Query: 73 VTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLGSLLHKV 132
V V+E R R GGR +T ++G A ++GG ++ + +L + +
Sbjct: 31 VAVIEARDRVGGRTWTDTIDG-------AVLEIGGQWVSPDQTALISLLDELGLKTFERY 83
Query: 133 RDKCPLY--------RLDGNSVDPEIDMKVEADFNRLLDKASRLR-QLMGEVAMDVSLGS 183
R+ +Y R G+S K E D RL+D+ L Q+ E L
Sbjct: 84 REGESVYISSAGERTRYTGDSFPTNETTKKEMD--RLIDEMDDLAAQIGAEEPWAHPLAR 141
Query: 184 ALETFWRVYW---DSGNAEAMNLFNWHLAN------------LEYXXXXXXXXXXXXFWD 228
L+T W S +AEA + +A L+ D
Sbjct: 142 DLDTVSFKQWLINQSDDAEARDNIGLFIAGGMLTKPAHSFSALQAVLMAASAGSFSHLVD 201
Query: 229 QD---DPYDMGGDHCFLPGGNGRLVQALVENVPILYEKTVHTIRYGSDGVQVLAGSQV-F 284
+D D +GG + + R+ +AL ++V V T+++ G VLA +
Sbjct: 202 EDFILDKRVIGG----MQQVSIRMAEALGDDV--FLNAPVRTVKWNESGATVLADGDIRV 255
Query: 285 EGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDTF 344
E V+ VP + I + P LP+R+ + GL+ KV ++ FW D
Sbjct: 256 EASRVILAVPPNLYSR--ISYDPPLPRRQHQMHQHQSLGLVIKVHAVYETPFWRED-GLS 312
Query: 345 GHLTDDSSSRGEFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIY 404
G S E + ++ G L+A V+ E K ++M A + IL +
Sbjct: 313 GTGFGASEVVQEVYDNTNHEDDRG--TLVAFVSDE---KADAMFELSAEERKATILASLA 367
Query: 405 EPKGINVPEPIQTVCTRWGGDPFSLGSYS 433
G EP+ + WG + ++ G Y+
Sbjct: 368 RYLGPKAEEPVVYYESDWGSEEWTRGCYA 396
>pdb|2YG6|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: P15i-A394c Double Mutant
pdb|2YG6|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: P15i-A394c Double Mutant
Length = 453
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 89/389 (22%), Positives = 148/389 (38%), Gaps = 51/389 (13%)
Query: 73 VTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLGSLLHKV 132
V V+E R R GGR +T ++G A ++GG ++ + +L + +
Sbjct: 31 VAVIEARDRVGGRTWTDTIDG-------AVLEIGGQWVSPDQTALISLLDELGLKTFERY 83
Query: 133 RDKCPLY--------RLDGNSVDPEIDMKVEADFNRLLDKASRLR-QLMGEVAMDVSLGS 183
R+ +Y R G+S K E D RL+D+ L Q+ E L
Sbjct: 84 REGESVYISSAGERTRYTGDSFPTNETTKKEMD--RLIDEMDDLAAQIGAEEPWAHPLAR 141
Query: 184 ALETFWRVYW---DSGNAEAMNLFNWHLAN------------LEYXXXXXXXXXXXXFWD 228
L+T W S +AEA + +A L+ D
Sbjct: 142 DLDTVSFKQWLINQSDDAEARDNIGLFIAGGMLTKPAHSFSALQAVLMAASAGSFSHLVD 201
Query: 229 QD---DPYDMGGDHCFLPGGNGRLVQALVENVPILYEKTVHTIRYGSDGVQVLAGSQV-F 284
+D D +GG + + R+ +AL ++V V T+++ G VLA +
Sbjct: 202 EDFILDKRVIGG----MQQVSIRMAEALGDDV--FLNAPVRTVKWNESGATVLADGDIRV 255
Query: 285 EGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDTF 344
E V+ VP + I + P LP+R+ + GL+ KV ++ FW D
Sbjct: 256 EASRVILAVPPNLYSR--ISYDPPLPRRQHQMHQHQSLGLVIKVHAVYETPFWRED-GLS 312
Query: 345 GHLTDDSSSRGEFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIY 404
G S E + ++ G L+A V+ E K ++M A + IL +
Sbjct: 313 GTGFGASEVVQEVYDNTNHEDDRG--TLVAFVSDE---KADAMFELSAEERKATILASLA 367
Query: 405 EPKGINVPEPIQTVCTRWGGDPFSLGSYS 433
G EP+ + WG + ++ G Y+
Sbjct: 368 RYLGPKAEEPVVYYESDWGSEEWTRGCYA 396
>pdb|2BXR|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXR|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXS|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
pdb|2BXS|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
Length = 527
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 89/451 (19%), Positives = 157/451 (34%), Gaps = 78/451 (17%)
Query: 73 VTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLG------ 126
V VLE R R GGR YT + N D+GG+ + G N + L+K+LG
Sbjct: 39 VLVLEARDRVGGRTYTIR------NEHVDYVDVGGAYV-GPTQNRILRLSKELGIETYKV 91
Query: 127 ----SLLHKVRDKCPLYRLDGNSVDPEIDMKVEADFNRLLDKASRLRQLMGEVAMDVSLG 182
L+ V+ K +R + P + D+N L + + E+ D
Sbjct: 92 NVSERLVQYVKGKTYPFR---GAFPPVWNPIAYLDYNNLWRTIDNMGK---EIPTDAPWE 145
Query: 183 SALETFW----------RVYWDSGNAEAMNLFNWHLANLEYXXXXXXXXXXXXFWDQDD- 231
+ W ++ W + F + N+ W
Sbjct: 146 AQHADKWDKMTMKELIDKICW----TKTARRFAYLFVNINVTSEPHEVSALWFLWYVKQC 201
Query: 232 -------PYDMGGDHCFLPGGNGRLVQALVENV--PILYEKTVHTIRYGSDGVQV-LAGS 281
GG GG+G++ + +++ + + V + SD + +
Sbjct: 202 GGTTRIFSVTNGGQERKFVGGSGQVSERIMDLLGDQVKLNHPVTHVDQSSDNIIIETLNH 261
Query: 282 QVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWE--- 338
+ +E V+ +P + + I F PELP + I+RL G + K M + FW+
Sbjct: 262 EHYECKYVINAIPPTL--TAKIHFRPELPAERNQLIQRLPMGAVIKCMMYYKEAFWKKKD 319
Query: 339 -------TDLDTFGHLT-DDSSSRGEFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPT 390
D D +T DD+ G P ++ + A + +
Sbjct: 320 YCGCMIIEDEDAPISITLDDTKPDGSL------------PAIMGFILARKADRLAKLHKE 367
Query: 391 DAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDY-DIMAE 449
K+ ++ + + P+ W + +S G Y+ Y ++ +
Sbjct: 368 IRKKKICELYAKVLGSQ--EALHPVHYEEKNWCEEQYSGGCYTAYFPPGIMTQYGRVIRQ 425
Query: 450 SVGDGRLFFAGEATIRRYPATMHGAFLSGLR 480
V GR+FFAG T ++ M GA +G R
Sbjct: 426 PV--GRIFFAGTETATKWSGYMEGAVEAGER 454
>pdb|2Z5X|A Chain A, Crystal Structure Of Human Monoamine Oxidase A With
Harmine
Length = 513
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 89/451 (19%), Positives = 157/451 (34%), Gaps = 78/451 (17%)
Query: 73 VTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLG------ 126
V VLE R R GGR YT + N D+GG+ + G N + L+K+LG
Sbjct: 28 VLVLEARDRVGGRTYTIR------NEHVDYVDVGGAYV-GPTQNRILRLSKELGIETYKV 80
Query: 127 ----SLLHKVRDKCPLYRLDGNSVDPEIDMKVEADFNRLLDKASRLRQLMGEVAMDVSLG 182
L+ V+ K +R + P + D+N L + + E+ D
Sbjct: 81 NVSERLVQYVKGKTYPFR---GAFPPVWNPIAYLDYNNLWRTIDNMGK---EIPTDAPWE 134
Query: 183 SALETFW----------RVYWDSGNAEAMNLFNWHLANLEYXXXXXXXXXXXXFWDQDD- 231
+ W ++ W + F + N+ W
Sbjct: 135 AQHADKWDKMTMKELIDKICW----TKTARRFAYLFVNINVTSEPHEVSALWFLWYVKQC 190
Query: 232 -------PYDMGGDHCFLPGGNGRLVQALVENV--PILYEKTVHTIRYGSDGVQV-LAGS 281
GG GG+G++ + +++ + + V + SD + +
Sbjct: 191 GGTTRIFSVTNGGQERKFVGGSGQVSERIMDLLGDQVKLNHPVTHVDQSSDNIIIETLNH 250
Query: 282 QVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWE--- 338
+ +E V+ +P + + I F PELP + I+RL G + K M + FW+
Sbjct: 251 EHYECKYVINAIPPTL--TAKIHFRPELPAERNQLIQRLPMGAVIKCMMYYKEAFWKKKD 308
Query: 339 -------TDLDTFGHLT-DDSSSRGEFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPT 390
D D +T DD+ G P ++ + A + +
Sbjct: 309 YCGCMIIEDEDAPISITLDDTKPDGSL------------PAIMGFILARKADRLAKLHKE 356
Query: 391 DAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDY-DIMAE 449
K+ ++ + + P+ W + +S G Y+ Y ++ +
Sbjct: 357 IRKKKICELYAKVLGSQ--EALHPVHYEEKNWCEEQYSGGCYTAYFPPGIMTQYGRVIRQ 414
Query: 450 SVGDGRLFFAGEATIRRYPATMHGAFLSGLR 480
V GR+FFAG T ++ M GA +G R
Sbjct: 415 PV--GRIFFAGTETATKWSGYMEGAVEAGER 443
>pdb|2Z5Y|A Chain A, Crystal Structure Of Human Monoamine Oxidase A (G110a)
With Harmine
Length = 513
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 89/451 (19%), Positives = 157/451 (34%), Gaps = 78/451 (17%)
Query: 73 VTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLG------ 126
V VLE R R GGR YT + N D+GG+ + G N + L+K+LG
Sbjct: 28 VLVLEARDRVGGRTYTIR------NEHVDYVDVGGAYV-GPTQNRILRLSKELGIETYKV 80
Query: 127 ----SLLHKVRDKCPLYRLDGNSVDPEIDMKVEADFNRLLDKASRLRQLMGEVAMDVSLG 182
L+ V+ K +R + P + D+N L + + E+ D
Sbjct: 81 NVSERLVQYVKGKTYPFR---AAFPPVWNPIAYLDYNNLWRTIDNMGK---EIPTDAPWE 134
Query: 183 SALETFW----------RVYWDSGNAEAMNLFNWHLANLEYXXXXXXXXXXXXFWDQDD- 231
+ W ++ W + F + N+ W
Sbjct: 135 AQHADKWDKMTMKELIDKICW----TKTARRFAYLFVNINVTSEPHEVSALWFLWYVKQC 190
Query: 232 -------PYDMGGDHCFLPGGNGRLVQALVENV--PILYEKTVHTIRYGSDGVQV-LAGS 281
GG GG+G++ + +++ + + V + SD + +
Sbjct: 191 GGTTRIFSVTNGGQERKFVGGSGQVSERIMDLLGDQVKLNHPVTHVDQSSDNIIIETLNH 250
Query: 282 QVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWE--- 338
+ +E V+ +P + + I F PELP + I+RL G + K M + FW+
Sbjct: 251 EHYECKYVINAIPPTL--TAKIHFRPELPAERNQLIQRLPMGAVIKCMMYYKEAFWKKKD 308
Query: 339 -------TDLDTFGHLT-DDSSSRGEFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPT 390
D D +T DD+ G P ++ + A + +
Sbjct: 309 YCGCMIIEDEDAPISITLDDTKPDGSL------------PAIMGFILARKADRLAKLHKE 356
Query: 391 DAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDY-DIMAE 449
K+ ++ + + P+ W + +S G Y+ Y ++ +
Sbjct: 357 IRKKKICELYAKVLGSQ--EALHPVHYEEKNWCEEQYSGGCYTAYFPPGIMTQYGRVIRQ 414
Query: 450 SVGDGRLFFAGEATIRRYPATMHGAFLSGLR 480
V GR+FFAG T ++ M GA +G R
Sbjct: 415 PV--GRIFFAGTETATKWSGYMEGAVEAGER 443
>pdb|1O5W|A Chain A, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|B Chain B, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|C Chain C, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|D Chain D, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
Length = 534
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 103/510 (20%), Positives = 178/510 (34%), Gaps = 76/510 (14%)
Query: 73 VTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLG------ 126
V VLE R R GGR YT + N D+GG+ + G N + L+K+LG
Sbjct: 47 VLVLEARDRVGGRTYTVR------NEHVKWVDVGGAYV-GPTQNRILRLSKELGIETYKV 99
Query: 127 ----SLLHKVRDKCPLYRLDGNSVDPEIDMKVEADFNRLLDKASRLRQLMG-EVAMDVSL 181
L+ V+ K +R + P + D+N L R MG E+ +D
Sbjct: 100 NVNERLVQYVKGKTYPFR---GAFPPVWNPLAYLDYNNLW----RTMDEMGKEIPVDAPW 152
Query: 182 GSALETFW----------RVYWDSGNAEAMNLFNWHLANLEYXXXXXXXXXXXXFWDQDD 231
+ W ++ W E LF N+ W
Sbjct: 153 QARHAQEWDKMTMKDLIDKICWTKTAREFAYLF----VNINVTSEPHEVSALWFLWYVRQ 208
Query: 232 --------PYDMGGDHCFLPGGNGRLVQALVENV--PILYEKTVHTIRYGSDGVQV-LAG 280
GG GG+G++ + ++ + + V I D + V
Sbjct: 209 CGGTARIFSVTNGGQERKFVGGSGQVSEQIMGLLGDKVKLSSPVTYIDQTDDNIIVETLN 268
Query: 281 SQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETD 340
+ +E V+ +P + + I F PELP + I+RL G + K + + FW+
Sbjct: 269 HEHYECKYVISAIP--PILTAKIHFKPELPPERNQLIQRLPMGAVIKCMVYYKEAFWKKK 326
Query: 341 LDTFGHLTDDSSSRGEFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQIL 400
D G + + P ++ + A + + K+ ++
Sbjct: 327 -DYCGCMIIEDEEAPIAITLDDTKPDGSLPAIMGFILARKADRLAKLHKDIRKRKICELY 385
Query: 401 KGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDY-DIMAESVGDGRLFFA 459
+ + P+ W + +S G Y+ Y ++ + V GR++FA
Sbjct: 386 AKVLGSQ--EALYPVHYEEKNWCEEQYSGGCYTAYFPPGIMTQYGRVIRQPV--GRIYFA 441
Query: 460 GEATIRRYPATMHGAFLSGLRETAKMAHCANARALRMKVKVGKIPSKNAYSCASALTDLF 519
G T ++ M GA +G R A+ A + + + V + SK+ A +T F
Sbjct: 442 GTETATQWSGYMEGAVEAGER-AAREVLNALGKVAKKDIWVEEPESKDV--PAIEITHTF 498
Query: 520 REPDLEFGSFSVIFSWKNPDPKSPSILRVT 549
E +L P P +L++T
Sbjct: 499 LERNL---------------PSVPGLLKIT 513
>pdb|3RHA|A Chain A, The Crystal Structure Of Oxidoreductase From Arthrobacter
Aurescens
pdb|3RHA|B Chain B, The Crystal Structure Of Oxidoreductase From Arthrobacter
Aurescens
Length = 482
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 74/188 (39%), Gaps = 12/188 (6%)
Query: 249 LVQALVENVPILYEKTVHTIRYGSDGVQVLAGSQVFEGDMVLCTVPLGVLKSGSIKFIPE 308
L+QA ++ V TI++ +GV V++ V+ VP + + F P
Sbjct: 221 LLQAAELGDDVVLNSPVRTIKWDENGVSVVSERATVNARFVIMAVPPNLYSR--VSFDPP 278
Query: 309 LPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDTFGHLTDDSSSRGEFFLFYSYATVAG 368
LP+R+ + GL+ KV ++ FW + L+ S G T G
Sbjct: 279 LPRRQHQMHQHQSLGLVIKVHAVYDTPFWREE-----GLSGTGFSAGALVQEVYDNTNHG 333
Query: 369 GP--LLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDP 426
L+ V+ E A + D +L+ + G K + P + WG +
Sbjct: 334 DSRGTLVGFVSDEKADAVFELSAEDRKKAILESIAGFLGDKALT---PEVYYESDWGSEE 390
Query: 427 FSLGSYSN 434
++ G+Y++
Sbjct: 391 WTRGAYAS 398
>pdb|2JAE|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In The Unbound State
pdb|2JAE|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In The Unbound State
pdb|2JB1|A Chain A, The L-Amino Acid Oxidase From Rhodococcus Opacus In
Complex With L-Alanine
pdb|2JB1|B Chain B, The L-Amino Acid Oxidase From Rhodococcus Opacus In
Complex With L-Alanine
pdb|2JB3|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With O-Aminobenzoate
pdb|2JB3|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With O-Aminobenzoate
pdb|2JB2|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With L-Phenylalanine.
pdb|2JB2|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With L-Phenylalanine
Length = 489
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 57/266 (21%), Positives = 109/266 (40%), Gaps = 34/266 (12%)
Query: 233 YDMGGDHC---FLP-GGNGRLVQALVENV---PILYEKTVHTIRYGSDGVQV---LAGSQ 282
+D G D F P GG R+ A + + I++ V +++ S+GV V GS+
Sbjct: 221 FDFGYDQAMMMFTPVGGMDRIYYAFQDRIGTDNIVFGAEVTSMKNVSEGVTVEYTAGGSK 280
Query: 283 -VFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDL 341
D +CT+P ++ + LP L A+K K+ + + +WET+
Sbjct: 281 KSITADYAICTIPPHLVG----RLQNNLPGDVLTALKAAKPSSSGKLGIEYSRRWWETED 336
Query: 342 DTFGHLTDDSSSRGEFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILK 401
+G ++ + Y + G ++ +G+ FES+ T ++ K
Sbjct: 337 RIYGGASNTDKDISQIMFPYDHYNSDRGVVVAYYSSGKRQEAFESL------THRQRLAK 390
Query: 402 GIYEPKGINVPEPIQTVCTRWGGD----PFSLGSYSNVAVGASGD------DYDIMAESV 451
I E I+ + + + + + G +S +++N A +Y+ + E V
Sbjct: 391 AIAEGSEIHGEKYTRDISSSFSGSWRRTKYSESAWANWAGSGGSHGGAATPEYEKLLEPV 450
Query: 452 GDGRLFFAGEATIRRYPATMHGAFLS 477
+++FAG+ + A HGA S
Sbjct: 451 --DKIYFAGDH-LSNAIAWQHGALTS 473
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 71 FRVTVLEGRKRAGGRVYTKK 90
++VTVLE R R GGRV+T +
Sbjct: 35 YKVTVLEARTRPGGRVWTAR 54
>pdb|2E1M|B Chain B, Crystal Structure Of L-Glutamate Oxidase From Streptomyces
Sp. X-119-6
Length = 130
Score = 32.7 bits (73), Expect = 0.79, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 279 AGSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWE 338
A +Q + GD+ + T+P L+ +K P +K A+ Y KV + F +WE
Sbjct: 1 AATQTWTGDLAIVTIPFSSLR--FVKVTPPFSYKKRRAVIETHYDQATKVLLEFSRRWWE 58
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,687,612
Number of Sequences: 62578
Number of extensions: 841523
Number of successful extensions: 1934
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1769
Number of HSP's gapped (non-prelim): 85
length of query: 722
length of database: 14,973,337
effective HSP length: 106
effective length of query: 616
effective length of database: 8,340,069
effective search space: 5137482504
effective search space used: 5137482504
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)