Query 004944
Match_columns 722
No_of_seqs 318 out of 2191
Neff 7.8
Searched_HMMs 46136
Date Thu Mar 28 15:29:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004944.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004944hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03000 amine oxidase 100.0 1E-117 2E-122 1026.3 68.8 700 2-711 141-850 (881)
2 PLN02328 lysine-specific histo 100.0 3.6E-98 8E-103 866.0 62.9 611 2-643 192-805 (808)
3 PLN02529 lysine-specific histo 100.0 5.1E-98 1E-102 862.4 63.7 620 2-652 117-736 (738)
4 KOG0029 Amine oxidase [Seconda 100.0 1.6E-53 3.5E-58 476.1 38.4 473 45-529 13-500 (501)
5 PLN02976 amine oxidase 100.0 4.3E-51 9.2E-56 480.9 47.4 439 46-493 692-1190(1713)
6 PLN02268 probable polyamine ox 100.0 3.8E-49 8.2E-54 442.6 45.3 420 48-489 1-434 (435)
7 PLN02568 polyamine oxidase 100.0 2.3E-47 4.9E-52 434.0 45.1 434 47-490 5-536 (539)
8 PLN02676 polyamine oxidase 100.0 1.8E-46 3.9E-51 423.7 43.4 425 47-490 26-474 (487)
9 KOG0685 Flavin-containing amin 100.0 1.8E-46 3.9E-51 398.6 34.7 432 45-493 19-495 (498)
10 COG1231 Monoamine oxidase [Ami 100.0 6.8E-43 1.5E-47 372.5 29.1 421 46-490 6-448 (450)
11 TIGR00562 proto_IX_ox protopor 100.0 1.3E-37 2.8E-42 351.9 37.2 409 47-489 2-460 (462)
12 PF01593 Amino_oxidase: Flavin 100.0 3.5E-37 7.7E-42 342.1 30.2 415 57-486 1-450 (450)
13 PRK12416 protoporphyrinogen ox 100.0 2.2E-36 4.7E-41 342.0 36.3 407 48-489 2-461 (463)
14 PLN02576 protoporphyrinogen ox 100.0 4.2E-36 9.2E-41 342.6 37.4 414 46-490 11-488 (496)
15 PRK11883 protoporphyrinogen ox 100.0 2.7E-35 5.8E-40 331.7 36.2 404 48-487 1-450 (451)
16 PRK07233 hypothetical protein; 100.0 1.8E-33 3.8E-38 315.2 36.6 407 49-490 1-432 (434)
17 PLN02612 phytoene desaturase 100.0 1.2E-32 2.6E-37 316.8 36.8 410 47-491 93-550 (567)
18 TIGR02731 phytoene_desat phyto 100.0 1.6E-32 3.5E-37 309.6 36.4 406 49-486 1-453 (453)
19 COG1232 HemY Protoporphyrinoge 100.0 2E-32 4.4E-37 299.6 29.1 404 48-486 1-443 (444)
20 PRK07208 hypothetical protein; 100.0 2.6E-30 5.7E-35 293.7 36.9 410 46-488 3-460 (479)
21 PLN02487 zeta-carotene desatur 100.0 9.6E-30 2.1E-34 289.8 36.0 411 46-490 74-554 (569)
22 TIGR03467 HpnE squalene-associ 100.0 1.3E-29 2.9E-34 282.3 35.7 388 61-486 1-418 (419)
23 TIGR02732 zeta_caro_desat caro 100.0 7.5E-30 1.6E-34 288.2 32.9 403 49-486 1-474 (474)
24 TIGR02733 desat_CrtD C-3',4' d 100.0 8.2E-28 1.8E-32 274.0 38.5 417 48-487 2-490 (492)
25 TIGR02734 crtI_fam phytoene de 100.0 4.2E-28 9.2E-33 277.1 30.6 413 50-491 1-494 (502)
26 COG3380 Predicted NAD/FAD-depe 100.0 1E-28 2.3E-33 245.0 17.8 324 48-489 2-331 (331)
27 TIGR02730 carot_isom carotene 100.0 5.6E-26 1.2E-30 258.9 36.8 421 48-489 1-492 (493)
28 KOG1276 Protoporphyrinogen oxi 99.9 5.5E-25 1.2E-29 231.1 29.8 416 46-486 10-490 (491)
29 COG1233 Phytoene dehydrogenase 99.9 5.6E-23 1.2E-27 233.0 18.3 237 47-298 3-282 (487)
30 COG3349 Uncharacterized conser 99.9 1.9E-21 4.1E-26 212.4 18.4 417 48-494 1-468 (485)
31 COG2907 Predicted NAD/FAD-bind 99.9 2.7E-20 6E-25 190.8 24.2 272 47-333 8-305 (447)
32 KOG4254 Phytoene desaturase [C 99.7 3.8E-16 8.2E-21 165.4 22.0 240 234-489 251-546 (561)
33 TIGR00031 UDP-GALP_mutase UDP- 99.7 1.8E-15 4E-20 164.7 20.8 233 48-299 2-249 (377)
34 PTZ00363 rab-GDP dissociation 99.6 1.3E-13 2.7E-18 153.8 22.0 240 46-294 3-287 (443)
35 PF13450 NAD_binding_8: NAD(P) 99.5 2.6E-14 5.7E-19 117.2 6.3 67 52-125 1-68 (68)
36 PRK13977 myosin-cross-reactive 99.5 1.3E-11 2.9E-16 139.2 25.5 72 47-125 22-97 (576)
37 COG2081 Predicted flavoprotein 99.4 4.3E-12 9.3E-17 134.9 17.0 56 239-294 102-164 (408)
38 COG0562 Glf UDP-galactopyranos 99.2 2.4E-11 5.1E-16 124.8 9.9 230 47-299 1-243 (374)
39 PRK10157 putative oxidoreducta 99.2 1.1E-09 2.3E-14 122.9 23.0 38 47-84 5-42 (428)
40 PRK10015 oxidoreductase; Provi 99.1 7.7E-09 1.7E-13 116.0 25.2 38 46-83 4-41 (429)
41 PRK07364 2-octaprenyl-6-methox 99.1 1.2E-08 2.6E-13 113.9 26.3 36 47-82 18-53 (415)
42 COG0644 FixC Dehydrogenases (f 99.1 6.6E-09 1.4E-13 115.4 23.8 42 47-88 3-44 (396)
43 TIGR02032 GG-red-SF geranylger 99.1 6.8E-09 1.5E-13 109.8 22.9 37 48-84 1-37 (295)
44 PF03486 HI0933_like: HI0933-l 99.1 4.7E-10 1E-14 124.0 13.1 56 240-295 101-164 (409)
45 TIGR01988 Ubi-OHases Ubiquinon 99.1 8.8E-09 1.9E-13 113.6 23.2 51 247-297 110-163 (385)
46 COG0654 UbiH 2-polyprenyl-6-me 99.1 3E-08 6.4E-13 109.9 26.2 192 257-490 120-317 (387)
47 PRK12409 D-amino acid dehydrog 99.1 5.2E-08 1.1E-12 108.7 27.8 37 48-84 2-38 (410)
48 PRK08773 2-octaprenyl-3-methyl 99.1 2.3E-08 5.1E-13 110.9 24.8 42 256-297 127-169 (392)
49 TIGR01377 soxA_mon sarcosine o 99.1 4.3E-08 9.3E-13 108.1 26.5 37 48-84 1-37 (380)
50 PF01266 DAO: FAD dependent ox 99.1 3.1E-09 6.7E-14 115.3 16.7 60 239-298 136-204 (358)
51 PRK11259 solA N-methyltryptoph 99.1 1.3E-07 2.8E-12 104.2 29.7 43 255-297 162-204 (376)
52 PRK09126 hypothetical protein; 99.0 1.9E-08 4.1E-13 111.5 21.3 43 256-298 125-168 (392)
53 PRK07494 2-octaprenyl-6-methox 99.0 3.8E-08 8.3E-13 108.9 23.7 36 47-82 7-42 (388)
54 TIGR01984 UbiH 2-polyprenyl-6- 99.0 6.5E-08 1.4E-12 106.8 24.0 51 247-297 109-162 (382)
55 PRK08020 ubiF 2-octaprenyl-3-m 99.0 4.7E-08 1E-12 108.4 22.7 43 256-298 127-170 (391)
56 PRK05714 2-octaprenyl-3-methyl 99.0 4.1E-08 9E-13 109.4 21.8 53 248-300 117-171 (405)
57 PRK07333 2-octaprenyl-6-methox 99.0 5.1E-08 1.1E-12 108.4 22.4 49 249-297 117-167 (403)
58 PRK11728 hydroxyglutarate oxid 98.9 8.1E-09 1.8E-13 114.7 14.2 41 47-87 2-44 (393)
59 PRK06847 hypothetical protein; 98.9 2.7E-08 6E-13 109.5 18.0 43 256-298 121-164 (375)
60 TIGR03329 Phn_aa_oxid putative 98.9 2.1E-08 4.5E-13 113.7 17.1 38 45-83 22-61 (460)
61 PRK06184 hypothetical protein; 98.9 6.9E-08 1.5E-12 110.7 21.5 36 47-82 3-38 (502)
62 PRK05732 2-octaprenyl-6-methox 98.9 2.5E-07 5.5E-12 102.5 25.3 42 256-297 127-169 (395)
63 PRK08013 oxidoreductase; Provi 98.9 1.3E-07 2.9E-12 105.2 23.0 53 248-300 116-171 (400)
64 PRK07608 ubiquinone biosynthes 98.9 2.6E-07 5.6E-12 102.3 24.7 37 47-83 5-41 (388)
65 COG0579 Predicted dehydrogenas 98.9 2.9E-08 6.4E-13 109.1 16.7 42 47-88 3-46 (429)
66 PRK08850 2-octaprenyl-6-methox 98.9 5.6E-08 1.2E-12 108.4 18.8 51 248-298 116-169 (405)
67 PRK08849 2-octaprenyl-3-methyl 98.9 2.5E-07 5.5E-12 102.4 23.0 45 256-300 125-170 (384)
68 COG1635 THI4 Ribulose 1,5-bisp 98.9 2.7E-09 5.8E-14 104.5 6.3 70 48-134 31-101 (262)
69 PRK07190 hypothetical protein; 98.9 4.2E-07 9.1E-12 103.6 25.0 45 256-300 123-168 (487)
70 PRK05868 hypothetical protein; 98.9 6.7E-07 1.4E-11 98.6 25.6 47 254-300 116-163 (372)
71 PRK08243 4-hydroxybenzoate 3-m 98.9 3.2E-07 6.9E-12 101.9 23.3 35 47-81 2-36 (392)
72 PRK08132 FAD-dependent oxidore 98.8 5.2E-07 1.1E-11 104.7 25.1 37 46-82 22-58 (547)
73 PRK08244 hypothetical protein; 98.8 3.3E-07 7.2E-12 104.9 22.5 36 47-82 2-37 (493)
74 PRK06185 hypothetical protein; 98.8 2.6E-07 5.7E-12 102.9 20.8 36 46-81 5-40 (407)
75 PRK06834 hypothetical protein; 98.8 4.4E-07 9.6E-12 103.5 22.9 43 256-298 114-157 (488)
76 PRK07045 putative monooxygenas 98.8 3.7E-07 8E-12 101.2 21.6 36 47-82 5-40 (388)
77 PRK06183 mhpA 3-(3-hydroxyphen 98.8 1.5E-07 3.2E-12 109.0 18.6 38 46-83 9-46 (538)
78 PRK00711 D-amino acid dehydrog 98.8 3.6E-08 7.7E-13 110.2 12.3 40 48-87 1-40 (416)
79 PLN02172 flavin-containing mon 98.8 6.7E-08 1.5E-12 109.1 14.4 41 47-87 10-50 (461)
80 PRK11445 putative oxidoreducta 98.8 1.7E-06 3.6E-11 94.7 24.8 45 254-298 110-158 (351)
81 COG0665 DadA Glycine/D-amino a 98.8 1.4E-06 3E-11 96.3 24.4 38 46-83 3-40 (387)
82 PRK06617 2-octaprenyl-6-methox 98.8 8.1E-07 1.7E-11 98.0 21.9 44 257-300 120-163 (374)
83 PRK07236 hypothetical protein; 98.7 1.3E-07 2.8E-12 104.8 15.0 43 257-299 113-156 (386)
84 PTZ00383 malate:quinone oxidor 98.7 7.1E-08 1.5E-12 109.5 13.1 39 46-84 44-84 (497)
85 PF13738 Pyr_redox_3: Pyridine 98.7 2E-08 4.4E-13 100.5 7.7 41 256-296 96-137 (203)
86 PRK06126 hypothetical protein; 98.7 4.3E-07 9.4E-12 105.3 19.8 35 47-81 7-41 (545)
87 PRK01747 mnmC bifunctional tRN 98.7 1.6E-07 3.5E-12 111.3 16.5 40 47-86 260-299 (662)
88 PRK07588 hypothetical protein; 98.7 1.3E-07 2.7E-12 105.0 13.0 51 250-300 110-161 (391)
89 PF01946 Thi4: Thi4 family; PD 98.7 6.6E-09 1.4E-13 102.6 2.4 70 48-133 18-87 (230)
90 PRK06481 fumarate reductase fl 98.7 6.2E-07 1.3E-11 102.8 18.3 41 46-86 60-100 (506)
91 PRK07538 hypothetical protein; 98.7 1.8E-06 3.9E-11 96.6 21.5 35 48-82 1-35 (413)
92 TIGR01989 COQ6 Ubiquinone bios 98.7 1.6E-06 3.4E-11 97.8 21.1 54 247-300 121-186 (437)
93 PF05834 Lycopene_cycl: Lycope 98.7 1.4E-05 3.1E-10 88.1 28.1 47 250-296 94-141 (374)
94 PRK13339 malate:quinone oxidor 98.7 4.5E-08 9.8E-13 110.7 8.4 41 46-86 5-47 (497)
95 PRK06996 hypothetical protein; 98.7 3.7E-06 8.1E-11 93.5 23.4 48 247-294 119-171 (398)
96 TIGR00275 flavoprotein, HI0933 98.7 3.1E-07 6.6E-12 102.2 14.6 52 245-296 103-159 (400)
97 PRK06753 hypothetical protein; 98.7 1.4E-07 3E-12 103.9 11.7 44 257-300 111-155 (373)
98 TIGR01320 mal_quin_oxido malat 98.6 3.4E-07 7.4E-12 104.1 14.5 39 48-86 1-41 (483)
99 PRK05257 malate:quinone oxidor 98.6 3.6E-07 7.9E-12 104.0 14.6 41 47-87 5-47 (494)
100 TIGR03364 HpnW_proposed FAD de 98.6 4.9E-08 1.1E-12 107.2 7.1 34 48-81 1-34 (365)
101 PRK08274 tricarballylate dehyd 98.6 7.8E-07 1.7E-11 101.1 17.1 39 47-85 4-44 (466)
102 PLN02463 lycopene beta cyclase 98.6 1.2E-05 2.7E-10 90.3 25.8 35 46-80 27-61 (447)
103 PRK08294 phenol 2-monooxygenas 98.6 4.9E-06 1.1E-10 97.8 22.9 36 46-81 31-67 (634)
104 PRK12266 glpD glycerol-3-phosp 98.6 7.6E-07 1.6E-11 102.1 15.7 40 46-85 5-44 (508)
105 PRK12845 3-ketosteroid-delta-1 98.6 1.8E-06 3.8E-11 100.1 18.5 42 45-87 14-55 (564)
106 TIGR01813 flavo_cyto_c flavocy 98.6 1.2E-06 2.7E-11 98.7 16.3 38 49-86 1-39 (439)
107 PRK07121 hypothetical protein; 98.6 1.9E-06 4.2E-11 98.6 17.9 41 46-86 19-59 (492)
108 TIGR01373 soxB sarcosine oxida 98.5 1.3E-06 2.8E-11 97.5 15.4 38 46-84 29-68 (407)
109 PF00890 FAD_binding_2: FAD bi 98.5 8.6E-07 1.9E-11 99.2 14.1 36 49-84 1-36 (417)
110 TIGR03219 salicylate_mono sali 98.5 8.3E-07 1.8E-11 99.3 13.4 54 247-300 105-162 (414)
111 PRK08163 salicylate hydroxylas 98.5 3.5E-07 7.6E-12 101.5 10.2 53 247-299 113-168 (396)
112 PLN02697 lycopene epsilon cycl 98.5 3.7E-05 7.9E-10 88.1 26.6 35 45-79 106-140 (529)
113 PRK12842 putative succinate de 98.5 5.3E-06 1.1E-10 96.7 18.4 41 47-87 9-49 (574)
114 KOG2820 FAD-dependent oxidored 98.5 9.3E-07 2E-11 92.0 10.5 62 238-299 148-214 (399)
115 PRK09897 hypothetical protein; 98.4 2.9E-06 6.4E-11 97.0 14.9 42 47-88 1-45 (534)
116 PRK06475 salicylate hydroxylas 98.4 2E-06 4.3E-11 95.8 12.8 35 48-82 3-37 (400)
117 PRK11101 glpA sn-glycerol-3-ph 98.4 1.8E-06 3.8E-11 100.0 12.3 38 47-84 6-43 (546)
118 PRK07573 sdhA succinate dehydr 98.4 6.9E-06 1.5E-10 96.6 17.0 53 30-84 20-72 (640)
119 PF00996 GDI: GDP dissociation 98.4 1.3E-05 2.9E-10 88.9 17.9 238 46-292 3-284 (438)
120 PRK12834 putative FAD-binding 98.4 7.6E-06 1.6E-10 94.9 16.5 40 47-86 4-45 (549)
121 PLN02927 antheraxanthin epoxid 98.3 3.4E-06 7.4E-11 98.2 13.2 53 247-299 194-250 (668)
122 COG0578 GlpA Glycerol-3-phosph 98.3 1.8E-05 4E-10 89.1 18.3 40 46-85 11-50 (532)
123 PRK06134 putative FAD-binding 98.3 1.8E-05 3.8E-10 92.4 18.8 43 45-87 10-52 (581)
124 PRK12835 3-ketosteroid-delta-1 98.3 1.9E-05 4E-10 92.2 18.7 40 46-85 10-49 (584)
125 PRK06175 L-aspartate oxidase; 98.3 5E-06 1.1E-10 93.5 13.1 38 47-85 4-41 (433)
126 TIGR00292 thiazole biosynthesi 98.3 6.2E-07 1.3E-11 93.3 5.4 39 48-86 22-60 (254)
127 PF13454 NAD_binding_9: FAD-NA 98.3 6.4E-06 1.4E-10 79.2 11.4 48 248-295 106-155 (156)
128 PRK04176 ribulose-1,5-biphosph 98.3 7.5E-07 1.6E-11 92.9 5.2 39 48-86 26-64 (257)
129 PRK12839 hypothetical protein; 98.3 4.2E-05 9E-10 89.0 19.9 42 46-87 7-48 (572)
130 PRK15317 alkyl hydroperoxide r 98.3 7.2E-06 1.6E-10 94.4 13.1 41 45-87 209-249 (517)
131 PRK05945 sdhA succinate dehydr 98.2 2.7E-05 5.8E-10 90.8 17.1 38 47-84 3-42 (575)
132 TIGR03140 AhpF alkyl hydropero 98.2 1.2E-05 2.7E-10 92.4 13.6 40 45-86 210-249 (515)
133 TIGR00551 nadB L-aspartate oxi 98.2 3.8E-05 8.1E-10 87.9 17.2 38 47-85 2-39 (488)
134 PRK07803 sdhA succinate dehydr 98.2 2.3E-05 5E-10 92.1 15.8 38 47-84 8-45 (626)
135 PF06100 Strep_67kDa_ant: Stre 98.2 3.5E-05 7.6E-10 85.3 15.9 44 47-90 2-49 (500)
136 TIGR02485 CobZ_N-term precorri 98.2 2E-05 4.2E-10 88.8 14.3 30 52-81 1-30 (432)
137 PRK12843 putative FAD-binding 98.2 7.2E-05 1.6E-09 87.3 19.2 42 46-87 15-56 (578)
138 PLN02852 ferredoxin-NADP+ redu 98.2 2.7E-06 5.9E-11 96.2 7.0 42 47-88 26-69 (491)
139 PLN02661 Putative thiazole syn 98.2 3.7E-06 8E-11 90.3 7.3 41 47-87 92-133 (357)
140 PRK08958 sdhA succinate dehydr 98.1 6.5E-05 1.4E-09 87.7 17.9 39 47-85 7-45 (588)
141 TIGR01812 sdhA_frdA_Gneg succi 98.1 4.4E-05 9.6E-10 89.0 16.0 38 49-86 1-38 (566)
142 PRK08071 L-aspartate oxidase; 98.1 4.1E-05 8.9E-10 87.9 15.4 38 47-85 3-40 (510)
143 TIGR03315 Se_ygfK putative sel 98.1 4.1E-06 8.9E-11 101.4 7.2 42 47-88 537-578 (1012)
144 PRK12779 putative bifunctional 98.1 3.1E-06 6.6E-11 103.2 6.2 41 47-87 306-346 (944)
145 COG2072 TrkA Predicted flavopr 98.1 3.3E-06 7.2E-11 95.0 6.0 43 45-87 6-49 (443)
146 PRK06854 adenylylsulfate reduc 98.1 6E-05 1.3E-09 88.3 16.6 37 47-83 11-49 (608)
147 PRK08401 L-aspartate oxidase; 98.1 5.3E-05 1.1E-09 86.1 15.4 34 47-80 1-34 (466)
148 PF01494 FAD_binding_3: FAD bi 98.1 2.5E-06 5.3E-11 92.4 4.2 35 48-82 2-36 (356)
149 KOG1399 Flavin-containing mono 98.1 3E-06 6.4E-11 94.5 4.8 40 47-86 6-45 (448)
150 PRK12831 putative oxidoreducta 98.1 4.9E-06 1.1E-10 94.3 6.6 42 46-87 139-180 (464)
151 PRK05249 soluble pyridine nucl 98.1 3.2E-06 7E-11 95.9 5.0 41 47-87 5-45 (461)
152 TIGR01350 lipoamide_DH dihydro 98.1 4.2E-06 9E-11 95.0 5.5 39 48-87 2-40 (461)
153 COG3573 Predicted oxidoreducta 98.0 5.4E-05 1.2E-09 78.7 12.6 38 47-84 5-44 (552)
154 COG0493 GltD NADPH-dependent g 98.0 9.4E-06 2E-10 90.9 7.8 75 4-88 90-164 (457)
155 TIGR01292 TRX_reduct thioredox 98.0 5.3E-06 1.2E-10 88.0 5.6 39 48-87 1-39 (300)
156 PLN02985 squalene monooxygenas 98.0 1.4E-05 3.1E-10 91.7 9.2 37 45-81 41-77 (514)
157 PRK06115 dihydrolipoamide dehy 98.0 5.7E-06 1.2E-10 94.0 5.5 41 47-87 3-43 (466)
158 TIGR01424 gluta_reduc_2 glutat 98.0 5.7E-06 1.2E-10 93.5 5.3 40 47-87 2-41 (446)
159 TIGR01421 gluta_reduc_1 glutat 98.0 5.9E-06 1.3E-10 93.5 5.1 40 47-87 2-41 (450)
160 PF00743 FMO-like: Flavin-bind 98.0 5.3E-06 1.1E-10 95.2 4.8 38 48-85 2-39 (531)
161 PRK07251 pyridine nucleotide-d 98.0 7.2E-06 1.6E-10 92.5 5.6 41 47-87 3-44 (438)
162 PRK09853 putative selenate red 98.0 9.3E-06 2E-10 98.0 6.3 42 47-88 539-580 (1019)
163 PRK08010 pyridine nucleotide-d 98.0 9.1E-06 2E-10 91.7 5.9 41 47-87 3-44 (441)
164 COG1148 HdrA Heterodisulfide r 98.0 7.3E-06 1.6E-10 88.9 4.8 43 47-89 124-166 (622)
165 TIGR03143 AhpF_homolog putativ 97.9 1.1E-05 2.3E-10 93.8 6.2 41 46-87 3-43 (555)
166 PF12831 FAD_oxidored: FAD dep 97.9 6.6E-06 1.4E-10 92.4 4.2 38 49-86 1-38 (428)
167 PLN00093 geranylgeranyl diphos 97.9 1.1E-05 2.5E-10 90.9 6.1 36 45-80 37-72 (450)
168 TIGR01316 gltA glutamate synth 97.9 1.4E-05 3E-10 90.4 6.7 41 47-87 133-173 (449)
169 PRK06416 dihydrolipoamide dehy 97.9 9.6E-06 2.1E-10 92.1 5.3 40 47-87 4-43 (462)
170 TIGR02023 BchP-ChlP geranylger 97.9 9.7E-06 2.1E-10 89.9 5.2 32 48-79 1-32 (388)
171 PRK06116 glutathione reductase 97.9 9.1E-06 2E-10 92.0 4.9 40 47-87 4-43 (450)
172 PRK05976 dihydrolipoamide dehy 97.9 1.1E-05 2.4E-10 91.9 5.6 41 46-87 3-43 (472)
173 PRK13369 glycerol-3-phosphate 97.9 1.2E-05 2.6E-10 92.3 5.7 39 46-84 5-43 (502)
174 PRK07512 L-aspartate oxidase; 97.9 0.00017 3.8E-09 82.8 15.3 33 47-81 9-41 (513)
175 PRK12775 putative trifunctiona 97.9 1.3E-05 2.8E-10 98.6 6.3 41 47-87 430-470 (1006)
176 PRK06467 dihydrolipoamide dehy 97.9 1.3E-05 2.8E-10 91.3 5.7 41 47-87 4-44 (471)
177 PRK06292 dihydrolipoamide dehy 97.9 1.2E-05 2.6E-10 91.2 5.3 40 47-87 3-42 (460)
178 PTZ00188 adrenodoxin reductase 97.9 1.8E-05 3.9E-10 88.5 6.3 43 47-89 39-82 (506)
179 PF06039 Mqo: Malate:quinone o 97.9 0.00037 8E-09 76.6 16.1 40 46-85 2-43 (488)
180 TIGR02360 pbenz_hydroxyl 4-hyd 97.9 1.3E-05 2.9E-10 88.9 5.3 35 47-81 2-36 (390)
181 PRK06370 mercuric reductase; V 97.9 1.5E-05 3.1E-10 90.7 5.6 41 46-87 4-44 (463)
182 PRK12778 putative bifunctional 97.9 1.8E-05 3.9E-10 95.3 6.6 41 47-87 431-471 (752)
183 PRK12769 putative oxidoreducta 97.9 1.8E-05 3.9E-10 93.7 6.5 41 47-87 327-367 (654)
184 KOG2614 Kynurenine 3-monooxyge 97.9 1.4E-05 3.1E-10 85.9 5.0 36 47-82 2-37 (420)
185 KOG2404 Fumarate reductase, fl 97.9 0.00049 1.1E-08 71.5 15.8 39 49-87 11-49 (477)
186 TIGR01790 carotene-cycl lycope 97.9 1.3E-05 2.7E-10 88.8 4.8 36 49-84 1-36 (388)
187 TIGR02028 ChlP geranylgeranyl 97.9 1.4E-05 3.1E-10 88.9 5.2 36 48-83 1-36 (398)
188 PRK12814 putative NADPH-depend 97.8 2.2E-05 4.7E-10 92.8 6.6 41 47-87 193-233 (652)
189 PRK10262 thioredoxin reductase 97.8 1.9E-05 4.1E-10 85.2 5.4 41 46-87 5-45 (321)
190 PRK07818 dihydrolipoamide dehy 97.8 1.8E-05 4E-10 89.9 5.4 40 47-87 4-43 (466)
191 PRK12837 3-ketosteroid-delta-1 97.8 1.9E-05 4.1E-10 90.8 5.6 40 46-86 6-45 (513)
192 KOG0399 Glutamate synthase [Am 97.8 1.9E-05 4.2E-10 92.2 5.4 41 47-87 1785-1825(2142)
193 TIGR01372 soxA sarcosine oxida 97.8 2.4E-05 5.1E-10 96.7 6.4 43 46-88 162-204 (985)
194 PRK14694 putative mercuric red 97.8 2.2E-05 4.7E-10 89.4 5.6 41 46-87 5-45 (468)
195 PRK12810 gltD glutamate syntha 97.8 3E-05 6.6E-10 88.2 6.7 41 47-87 143-183 (471)
196 PRK11749 dihydropyrimidine deh 97.8 2.7E-05 5.9E-10 88.3 6.3 42 46-87 139-180 (457)
197 TIGR02053 MerA mercuric reduct 97.8 2.4E-05 5.3E-10 88.8 5.2 39 48-87 1-39 (463)
198 PTZ00058 glutathione reductase 97.8 3.8E-05 8.2E-10 88.8 6.7 42 46-88 47-88 (561)
199 PRK06567 putative bifunctional 97.7 3E-05 6.6E-10 92.6 5.8 39 47-85 383-421 (1028)
200 PRK12809 putative oxidoreducta 97.7 5.4E-05 1.2E-09 89.4 7.9 41 47-87 310-350 (639)
201 PRK14727 putative mercuric red 97.7 3.7E-05 8.1E-10 87.7 6.3 41 47-87 16-56 (479)
202 PLN02464 glycerol-3-phosphate 97.7 3E-05 6.4E-10 91.1 5.5 39 46-84 70-108 (627)
203 COG0492 TrxB Thioredoxin reduc 97.7 3E-05 6.6E-10 82.6 4.8 42 47-88 3-44 (305)
204 PRK13748 putative mercuric red 97.7 3.2E-05 6.9E-10 90.1 5.4 40 47-87 98-137 (561)
205 PRK12844 3-ketosteroid-delta-1 97.7 3.8E-05 8.2E-10 89.2 5.7 40 47-86 6-45 (557)
206 TIGR01318 gltD_gamma_fam gluta 97.7 4.9E-05 1.1E-09 86.4 6.4 41 47-87 141-181 (467)
207 KOG2415 Electron transfer flav 97.7 2.9E-05 6.2E-10 82.8 4.1 43 46-88 75-123 (621)
208 PRK05192 tRNA uridine 5-carbox 97.7 4E-05 8.6E-10 88.2 5.3 39 47-85 4-43 (618)
209 PRK05335 tRNA (uracil-5-)-meth 97.7 4.5E-05 9.7E-10 84.1 5.4 37 47-83 2-38 (436)
210 PRK06327 dihydrolipoamide dehy 97.7 4E-05 8.7E-10 87.3 5.1 32 47-78 4-35 (475)
211 PTZ00052 thioredoxin reductase 97.7 4.3E-05 9.3E-10 87.6 5.3 32 47-78 5-36 (499)
212 TIGR01789 lycopene_cycl lycope 97.7 4.1E-05 8.9E-10 84.3 4.9 36 49-84 1-38 (370)
213 KOG2844 Dimethylglycine dehydr 97.6 0.00025 5.5E-09 79.9 10.4 51 247-297 187-243 (856)
214 PTZ00367 squalene epoxidase; P 97.6 5E-05 1.1E-09 87.9 5.0 35 46-80 32-66 (567)
215 PRK07843 3-ketosteroid-delta-1 97.6 5.8E-05 1.3E-09 87.7 5.6 41 46-86 6-46 (557)
216 TIGR01317 GOGAT_sm_gam glutama 97.6 7.8E-05 1.7E-09 85.1 6.5 41 47-87 143-183 (485)
217 COG2509 Uncharacterized FAD-de 97.6 0.0043 9.4E-08 67.9 19.3 49 247-295 177-228 (486)
218 PLN02507 glutathione reductase 97.6 6E-05 1.3E-09 86.4 5.4 32 47-78 25-56 (499)
219 PLN02815 L-aspartate oxidase 97.6 7.7E-05 1.7E-09 86.9 6.1 39 46-85 28-66 (594)
220 PRK08641 sdhA succinate dehydr 97.6 6.2E-05 1.3E-09 87.9 5.3 38 47-84 3-40 (589)
221 PRK07804 L-aspartate oxidase; 97.6 6.4E-05 1.4E-09 87.0 5.1 39 46-84 15-53 (541)
222 PRK07395 L-aspartate oxidase; 97.6 7.1E-05 1.5E-09 86.7 5.4 40 45-85 7-46 (553)
223 PRK12771 putative glutamate sy 97.6 0.00011 2.3E-09 85.8 6.7 41 47-87 137-177 (564)
224 PF04820 Trp_halogenase: Trypt 97.6 0.00044 9.6E-09 78.2 11.5 33 49-81 1-36 (454)
225 PRK07057 sdhA succinate dehydr 97.6 8.8E-05 1.9E-09 86.7 5.9 40 46-85 11-50 (591)
226 PRK06452 sdhA succinate dehydr 97.5 7.5E-05 1.6E-09 86.9 5.2 38 47-84 5-42 (566)
227 TIGR00137 gid_trmFO tRNA:m(5)U 97.5 8E-05 1.7E-09 82.6 5.1 36 49-84 2-37 (433)
228 PLN00128 Succinate dehydrogena 97.5 8.2E-05 1.8E-09 87.4 5.0 39 46-84 49-87 (635)
229 KOG2960 Protein involved in th 97.5 2.8E-05 6.1E-10 75.9 0.8 66 48-130 77-145 (328)
230 PTZ00139 Succinate dehydrogena 97.5 8.9E-05 1.9E-09 87.0 5.1 39 47-85 29-67 (617)
231 PRK12770 putative glutamate sy 97.5 0.00015 3.3E-09 79.3 6.4 41 47-87 18-58 (352)
232 PF00732 GMC_oxred_N: GMC oxid 97.5 7.7E-05 1.7E-09 79.3 3.7 35 48-82 1-36 (296)
233 PRK09078 sdhA succinate dehydr 97.5 0.00011 2.3E-09 86.1 5.1 39 47-85 12-50 (598)
234 TIGR01423 trypano_reduc trypan 97.5 0.00012 2.5E-09 83.6 5.2 41 47-87 3-52 (486)
235 PLN02546 glutathione reductase 97.5 0.00011 2.4E-09 84.9 5.2 32 47-78 79-110 (558)
236 PF07992 Pyr_redox_2: Pyridine 97.5 0.00012 2.6E-09 72.8 4.7 33 49-81 1-33 (201)
237 COG1249 Lpd Pyruvate/2-oxoglut 97.5 0.00014 3E-09 81.7 5.4 41 47-87 4-44 (454)
238 PRK06069 sdhA succinate dehydr 97.4 0.00012 2.7E-09 85.4 5.0 39 47-85 5-46 (577)
239 PTZ00306 NADH-dependent fumara 97.4 0.00018 3.8E-09 90.4 6.5 41 46-86 408-448 (1167)
240 PRK08626 fumarate reductase fl 97.4 0.00013 2.8E-09 86.2 5.0 38 47-84 5-42 (657)
241 PRK13984 putative oxidoreducta 97.4 0.00019 4.2E-09 84.3 6.4 42 46-87 282-323 (604)
242 PF00070 Pyr_redox: Pyridine n 97.4 0.00025 5.5E-09 59.9 5.2 35 49-83 1-35 (80)
243 PF01134 GIDA: Glucose inhibit 97.4 0.0001 2.3E-09 80.5 3.4 38 49-86 1-39 (392)
244 PTZ00153 lipoamide dehydrogena 97.4 0.00018 4E-09 84.5 5.4 41 47-87 116-157 (659)
245 TIGR02462 pyranose_ox pyranose 97.3 0.00019 4.1E-09 82.2 5.0 37 48-84 1-37 (544)
246 PRK09231 fumarate reductase fl 97.3 0.00017 3.7E-09 84.1 4.7 38 47-84 4-43 (582)
247 PRK06263 sdhA succinate dehydr 97.3 0.00019 4.1E-09 83.2 4.9 38 47-85 7-45 (543)
248 TIGR01176 fum_red_Fp fumarate 97.3 0.0002 4.4E-09 83.4 4.8 40 47-86 3-44 (580)
249 KOG1298 Squalene monooxygenase 97.3 0.00032 6.9E-09 74.5 5.4 34 46-79 44-77 (509)
250 PRK08275 putative oxidoreducta 97.3 0.00022 4.8E-09 82.8 4.8 37 47-83 9-47 (554)
251 PRK06912 acoL dihydrolipoamide 97.3 0.00026 5.5E-09 80.4 5.1 38 49-87 2-39 (458)
252 TIGR01438 TGR thioredoxin and 97.2 0.00029 6.2E-09 80.5 5.1 33 47-79 2-34 (484)
253 PRK09077 L-aspartate oxidase; 97.2 0.0003 6.4E-09 81.4 5.1 38 47-85 8-45 (536)
254 PRK08255 salicylyl-CoA 5-hydro 97.2 0.00029 6.2E-09 84.9 5.0 34 48-81 1-36 (765)
255 PRK07845 flavoprotein disulfid 97.2 0.00033 7.2E-09 79.7 5.2 40 47-87 1-40 (466)
256 PRK05329 anaerobic glycerol-3- 97.2 0.0004 8.8E-09 77.4 5.3 34 47-80 2-35 (422)
257 KOG1800 Ferredoxin/adrenodoxin 97.2 0.00043 9.4E-09 73.5 4.9 45 48-92 21-67 (468)
258 PRK08205 sdhA succinate dehydr 97.2 0.00039 8.4E-09 81.3 5.0 37 47-84 5-41 (583)
259 PRK02106 choline dehydrogenase 97.1 0.00043 9.4E-09 80.6 5.3 34 47-80 5-39 (560)
260 TIGR01811 sdhA_Bsu succinate d 97.1 0.00036 7.9E-09 81.7 4.6 35 50-84 1-35 (603)
261 COG3075 GlpB Anaerobic glycero 97.1 0.00043 9.2E-09 72.3 4.5 33 47-79 2-34 (421)
262 COG1053 SdhA Succinate dehydro 97.1 0.00045 9.8E-09 79.7 4.9 40 46-85 5-44 (562)
263 COG5044 MRS6 RAB proteins gera 97.1 0.023 5E-07 60.6 16.8 240 47-293 6-280 (434)
264 TIGR02061 aprA adenosine phosp 97.1 0.00048 1E-08 80.5 4.8 33 49-81 1-37 (614)
265 PF07156 Prenylcys_lyase: Pren 97.0 0.0099 2.2E-07 65.1 13.4 62 236-298 117-188 (368)
266 KOG1439 RAB proteins geranylge 97.0 0.0047 1E-07 66.4 10.3 45 47-91 4-48 (440)
267 KOG2665 Predicted FAD-dependen 96.9 0.0014 3.1E-08 68.0 5.9 41 43-83 44-86 (453)
268 KOG2853 Possible oxidoreductas 96.9 0.00089 1.9E-08 70.1 4.2 35 47-81 86-124 (509)
269 TIGR00136 gidA glucose-inhibit 96.9 0.0011 2.5E-08 76.3 5.3 39 48-86 1-39 (617)
270 PRK13800 putative oxidoreducta 96.8 0.001 2.3E-08 81.6 5.0 35 47-81 13-47 (897)
271 PRK13512 coenzyme A disulfide 96.7 0.0016 3.4E-08 73.6 5.2 36 48-83 2-39 (438)
272 COG4716 Myosin-crossreactive a 96.7 0.0063 1.4E-07 64.6 9.1 41 47-87 22-66 (587)
273 TIGR03452 mycothione_red mycot 96.7 0.0016 3.5E-08 73.8 5.2 38 47-87 2-39 (452)
274 PRK09564 coenzyme A disulfide 96.7 0.0015 3.4E-08 73.7 4.9 36 48-83 1-38 (444)
275 TIGR03378 glycerol3P_GlpB glyc 96.7 0.0019 4.1E-08 71.6 5.0 33 48-80 1-33 (419)
276 KOG1335 Dihydrolipoamide dehyd 96.7 0.0018 3.8E-08 69.0 4.5 42 46-87 38-79 (506)
277 KOG2852 Possible oxidoreductas 96.7 0.00066 1.4E-08 69.7 1.3 39 47-85 10-54 (380)
278 PRK07846 mycothione reductase; 96.7 0.0016 3.4E-08 73.8 4.5 37 48-87 2-38 (451)
279 TIGR03197 MnmC_Cterm tRNA U-34 96.6 0.0025 5.5E-08 70.4 5.8 51 247-297 135-190 (381)
280 TIGR01810 betA choline dehydro 96.6 0.0015 3.2E-08 75.7 3.9 32 49-80 1-33 (532)
281 COG2303 BetA Choline dehydroge 96.6 0.0017 3.8E-08 75.0 4.4 35 45-79 5-39 (542)
282 PRK07846 mycothione reductase; 96.6 0.015 3.3E-07 65.8 11.7 34 48-81 167-200 (451)
283 PRK09754 phenylpropionate diox 96.5 0.0027 5.9E-08 70.6 5.2 36 48-83 4-41 (396)
284 PLN02785 Protein HOTHEAD 96.5 0.0033 7.1E-08 73.4 5.7 35 45-80 53-87 (587)
285 PTZ00318 NADH dehydrogenase-li 96.5 0.0029 6.4E-08 71.0 5.1 38 44-81 7-44 (424)
286 PF13434 K_oxygenase: L-lysine 96.4 0.0049 1.1E-07 67.1 6.3 35 47-81 2-37 (341)
287 TIGR03452 mycothione_red mycot 96.4 0.022 4.8E-07 64.6 11.8 34 48-81 170-203 (452)
288 COG0446 HcaD Uncharacterized N 96.4 0.0036 7.7E-08 69.4 4.8 39 48-86 137-175 (415)
289 COG4529 Uncharacterized protei 95.8 0.0093 2E-07 66.1 4.7 38 47-84 1-41 (474)
290 COG1206 Gid NAD(FAD)-utilizing 95.8 0.0085 1.8E-07 62.8 3.7 35 48-82 4-38 (439)
291 COG0029 NadB Aspartate oxidase 95.7 0.0079 1.7E-07 66.6 3.4 32 49-81 9-40 (518)
292 PRK04965 NADH:flavorubredoxin 95.6 0.015 3.3E-07 64.2 5.3 33 48-80 3-37 (377)
293 TIGR02352 thiamin_ThiO glycine 95.3 0.49 1.1E-05 50.8 15.7 43 256-298 151-194 (337)
294 COG1252 Ndh NADH dehydrogenase 95.2 0.022 4.8E-07 62.8 5.0 35 47-81 3-39 (405)
295 TIGR03169 Nterm_to_SelD pyridi 95.2 0.017 3.6E-07 63.4 4.1 33 49-81 1-36 (364)
296 KOG4716 Thioredoxin reductase 95.0 0.021 4.6E-07 60.0 3.8 33 46-78 18-50 (503)
297 KOG0405 Pyridine nucleotide-di 95.0 0.033 7.2E-07 58.9 5.2 44 45-88 18-61 (478)
298 COG0445 GidA Flavin-dependent 95.0 0.018 3.8E-07 64.6 3.4 43 47-89 4-46 (621)
299 PRK09754 phenylpropionate diox 94.9 0.031 6.8E-07 62.2 4.9 36 48-83 145-180 (396)
300 PRK01438 murD UDP-N-acetylmura 94.8 0.034 7.4E-07 63.5 5.2 34 48-81 17-50 (480)
301 PF01210 NAD_Gly3P_dh_N: NAD-d 94.6 0.035 7.6E-07 53.3 4.0 32 49-80 1-32 (157)
302 PRK02705 murD UDP-N-acetylmura 94.5 0.038 8.2E-07 62.8 4.5 34 49-82 2-35 (459)
303 KOG3855 Monooxygenase involved 94.4 0.043 9.2E-07 59.5 4.2 35 46-80 35-73 (481)
304 PRK14989 nitrite reductase sub 94.3 0.049 1.1E-06 66.3 5.1 36 48-83 4-43 (847)
305 KOG0404 Thioredoxin reductase 94.3 0.1 2.2E-06 52.1 6.3 43 48-90 9-55 (322)
306 PRK07251 pyridine nucleotide-d 94.2 0.057 1.2E-06 60.9 5.3 35 48-82 158-192 (438)
307 COG3634 AhpF Alkyl hydroperoxi 94.1 0.031 6.7E-07 59.1 2.4 40 45-86 209-248 (520)
308 PF02737 3HCDH_N: 3-hydroxyacy 94.1 0.063 1.4E-06 52.9 4.6 32 49-80 1-32 (180)
309 PRK04965 NADH:flavorubredoxin 94.0 0.068 1.5E-06 59.0 5.2 35 48-82 142-176 (377)
310 TIGR02374 nitri_red_nirB nitri 94.0 0.053 1.2E-06 65.8 4.6 47 249-295 188-236 (785)
311 PRK05976 dihydrolipoamide dehy 93.9 0.067 1.5E-06 61.0 5.0 35 48-82 181-215 (472)
312 TIGR01350 lipoamide_DH dihydro 93.7 0.078 1.7E-06 60.2 5.2 35 48-82 171-205 (461)
313 KOG3923 D-aspartate oxidase [A 93.6 0.051 1.1E-06 56.5 3.0 33 47-79 3-42 (342)
314 TIGR02053 MerA mercuric reduct 93.5 0.091 2E-06 59.7 5.1 35 48-82 167-201 (463)
315 PF03721 UDPG_MGDP_dh_N: UDP-g 93.4 0.073 1.6E-06 52.7 3.7 33 48-80 1-33 (185)
316 KOG0042 Glycerol-3-phosphate d 93.3 0.025 5.4E-07 63.0 0.2 39 46-84 66-104 (680)
317 PRK06370 mercuric reductase; V 93.1 0.11 2.4E-06 59.0 5.2 36 48-83 172-207 (463)
318 PRK06115 dihydrolipoamide dehy 93.0 0.12 2.6E-06 58.9 5.2 35 48-82 175-209 (466)
319 PRK06912 acoL dihydrolipoamide 93.0 0.12 2.5E-06 58.8 5.1 35 48-82 171-205 (458)
320 TIGR01421 gluta_reduc_1 glutat 93.0 0.12 2.6E-06 58.6 5.2 35 48-82 167-201 (450)
321 PRK06467 dihydrolipoamide dehy 93.0 0.12 2.6E-06 59.0 5.2 35 48-82 175-209 (471)
322 PRK06129 3-hydroxyacyl-CoA deh 93.0 0.1 2.3E-06 55.9 4.4 33 48-80 3-35 (308)
323 PRK06416 dihydrolipoamide dehy 93.0 0.12 2.6E-06 58.7 5.1 35 48-82 173-207 (462)
324 KOG1238 Glucose dehydrogenase/ 92.9 0.1 2.2E-06 59.9 4.4 38 45-82 55-93 (623)
325 COG1249 Lpd Pyruvate/2-oxoglut 92.9 0.13 2.9E-06 57.9 5.3 35 48-82 174-208 (454)
326 TIGR03385 CoA_CoA_reduc CoA-di 92.9 0.14 3E-06 57.6 5.4 35 48-82 138-172 (427)
327 PF01262 AlaDh_PNT_C: Alanine 92.8 0.16 3.4E-06 49.4 4.8 33 48-80 21-53 (168)
328 PRK06292 dihydrolipoamide dehy 92.7 0.14 3.1E-06 58.0 5.3 36 48-83 170-205 (460)
329 PF02558 ApbA: Ketopantoate re 92.7 0.16 3.4E-06 48.1 4.8 31 50-80 1-31 (151)
330 PRK13512 coenzyme A disulfide 92.7 0.13 2.8E-06 58.1 4.8 36 48-83 149-184 (438)
331 PRK07818 dihydrolipoamide dehy 92.7 0.14 2.9E-06 58.4 5.0 35 48-82 173-207 (466)
332 PRK14106 murD UDP-N-acetylmura 92.6 0.14 3.1E-06 57.9 5.1 34 47-80 5-38 (450)
333 PF13738 Pyr_redox_3: Pyridine 92.6 0.13 2.8E-06 51.0 4.2 34 47-80 167-200 (203)
334 PRK05249 soluble pyridine nucl 92.5 0.15 3.2E-06 57.9 5.1 35 48-82 176-210 (461)
335 COG0686 Ald Alanine dehydrogen 92.4 0.15 3.2E-06 53.5 4.2 68 47-114 168-245 (371)
336 PRK06327 dihydrolipoamide dehy 92.4 0.16 3.5E-06 58.0 5.1 35 48-82 184-218 (475)
337 KOG3851 Sulfide:quinone oxidor 92.2 0.13 2.9E-06 53.9 3.7 60 21-80 13-74 (446)
338 PRK08293 3-hydroxybutyryl-CoA 92.1 0.17 3.7E-06 53.7 4.5 33 48-80 4-36 (287)
339 PRK09564 coenzyme A disulfide 91.9 0.21 4.6E-06 56.4 5.4 35 48-82 150-184 (444)
340 PRK09260 3-hydroxybutyryl-CoA 91.8 0.18 4E-06 53.5 4.5 33 48-80 2-34 (288)
341 TIGR02374 nitri_red_nirB nitri 91.8 0.18 3.8E-06 61.3 4.8 36 48-83 141-176 (785)
342 KOG2311 NAD/FAD-utilizing prot 91.7 0.16 3.5E-06 56.0 3.8 38 46-83 27-65 (679)
343 PRK07819 3-hydroxybutyryl-CoA 91.7 0.18 4E-06 53.5 4.2 33 48-80 6-38 (286)
344 PRK07066 3-hydroxybutyryl-CoA 91.6 0.2 4.4E-06 53.9 4.5 33 48-80 8-40 (321)
345 TIGR03140 AhpF alkyl hydropero 91.5 0.22 4.8E-06 57.5 5.0 34 48-81 353-386 (515)
346 PRK07845 flavoprotein disulfid 91.4 0.24 5.1E-06 56.4 5.1 36 48-83 178-213 (466)
347 cd01080 NAD_bind_m-THF_DH_Cycl 91.4 0.3 6.4E-06 47.5 4.9 33 47-79 44-77 (168)
348 PRK07530 3-hydroxybutyryl-CoA 91.0 0.3 6.4E-06 52.0 5.0 33 48-80 5-37 (292)
349 PRK14989 nitrite reductase sub 91.0 0.24 5.3E-06 60.4 4.9 36 48-83 146-181 (847)
350 TIGR01470 cysG_Nterm siroheme 91.0 0.32 6.9E-06 49.0 4.9 33 48-80 10-42 (205)
351 PTZ00058 glutathione reductase 91.0 0.28 6E-06 57.1 5.1 36 47-82 237-272 (561)
352 PTZ00153 lipoamide dehydrogena 90.9 0.27 5.9E-06 58.1 5.1 36 48-83 313-348 (659)
353 COG0569 TrkA K+ transport syst 90.9 0.28 6.2E-06 50.1 4.5 33 48-80 1-33 (225)
354 TIGR01424 gluta_reduc_2 glutat 90.9 0.29 6.3E-06 55.4 5.1 35 48-82 167-201 (446)
355 PRK06249 2-dehydropantoate 2-r 90.9 0.34 7.3E-06 52.1 5.3 33 48-80 6-38 (313)
356 PRK05708 2-dehydropantoate 2-r 90.8 0.32 6.9E-06 52.2 5.0 33 47-79 2-34 (305)
357 KOG2755 Oxidoreductase [Genera 90.7 0.16 3.4E-06 52.1 2.3 34 49-82 1-36 (334)
358 PF01488 Shikimate_DH: Shikima 90.6 0.47 1E-05 44.3 5.4 33 47-79 12-45 (135)
359 PRK10262 thioredoxin reductase 90.5 0.34 7.4E-06 52.1 5.0 34 48-81 147-180 (321)
360 PRK06522 2-dehydropantoate 2-r 90.4 0.32 7E-06 51.7 4.7 32 48-79 1-32 (304)
361 PLN02507 glutathione reductase 90.4 0.33 7.1E-06 55.8 5.0 34 48-81 204-237 (499)
362 PRK06116 glutathione reductase 90.4 0.35 7.6E-06 54.7 5.2 35 48-82 168-202 (450)
363 TIGR01316 gltA glutamate synth 90.4 0.34 7.3E-06 54.9 5.0 33 48-80 273-305 (449)
364 PRK15317 alkyl hydroperoxide r 90.4 0.33 7.1E-06 56.1 5.0 34 48-81 352-385 (517)
365 PRK04690 murD UDP-N-acetylmura 90.3 0.31 6.8E-06 55.5 4.7 34 48-81 9-42 (468)
366 PRK08229 2-dehydropantoate 2-r 90.3 0.36 7.7E-06 52.5 4.9 32 48-79 3-34 (341)
367 PRK06035 3-hydroxyacyl-CoA deh 90.2 0.32 6.9E-06 51.7 4.4 33 48-80 4-36 (291)
368 PRK08010 pyridine nucleotide-d 90.2 0.36 7.8E-06 54.5 5.0 35 48-82 159-193 (441)
369 TIGR03143 AhpF_homolog putativ 90.1 0.32 7E-06 56.6 4.7 34 48-81 144-177 (555)
370 PRK12921 2-dehydropantoate 2-r 90.0 0.37 8.1E-06 51.3 4.7 31 48-78 1-31 (305)
371 TIGR01763 MalateDH_bact malate 90.0 0.43 9.3E-06 51.2 5.1 33 48-80 2-35 (305)
372 COG0771 MurD UDP-N-acetylmuram 89.8 0.33 7.2E-06 54.3 4.2 36 47-82 7-42 (448)
373 PRK05808 3-hydroxybutyryl-CoA 89.6 0.39 8.3E-06 50.8 4.4 33 48-80 4-36 (282)
374 PRK12770 putative glutamate sy 89.6 0.44 9.6E-06 52.1 5.0 33 48-80 173-206 (352)
375 PF13241 NAD_binding_7: Putati 89.6 0.32 6.9E-06 43.1 3.2 33 47-79 7-39 (103)
376 PLN02546 glutathione reductase 89.5 0.45 9.7E-06 55.4 5.1 35 48-82 253-287 (558)
377 COG1004 Ugd Predicted UDP-gluc 89.4 0.41 8.8E-06 52.1 4.3 33 48-80 1-33 (414)
378 PRK11064 wecC UDP-N-acetyl-D-m 89.2 0.4 8.6E-06 53.8 4.4 33 48-80 4-36 (415)
379 TIGR01292 TRX_reduct thioredox 89.2 0.49 1.1E-05 49.9 4.9 33 48-80 142-174 (300)
380 PRK01710 murD UDP-N-acetylmura 89.2 0.44 9.6E-06 54.1 4.8 33 48-80 15-47 (458)
381 PRK12831 putative oxidoreducta 89.2 0.47 1E-05 54.0 5.0 34 47-80 281-314 (464)
382 TIGR00518 alaDH alanine dehydr 89.2 0.5 1.1E-05 52.1 5.0 33 48-80 168-200 (370)
383 cd05292 LDH_2 A subgroup of L- 89.1 0.49 1.1E-05 50.8 4.8 33 48-80 1-35 (308)
384 PRK14619 NAD(P)H-dependent gly 89.1 0.58 1.3E-05 50.2 5.3 34 47-80 4-37 (308)
385 COG1748 LYS9 Saccharopine dehy 88.9 0.61 1.3E-05 51.3 5.4 46 47-92 1-55 (389)
386 TIGR01423 trypano_reduc trypan 88.9 0.49 1.1E-05 54.2 4.9 35 48-82 188-225 (486)
387 PRK04148 hypothetical protein; 88.9 0.41 9E-06 44.5 3.5 33 48-81 18-50 (134)
388 PRK00094 gpsA NAD(P)H-dependen 88.9 0.53 1.2E-05 50.6 4.9 33 48-80 2-34 (325)
389 PRK06718 precorrin-2 dehydroge 88.8 0.63 1.4E-05 46.7 5.0 33 47-79 10-42 (202)
390 TIGR03026 NDP-sugDHase nucleot 88.7 0.43 9.4E-06 53.4 4.2 33 49-81 2-34 (411)
391 TIGR03862 flavo_PP4765 unchara 88.6 1.5 3.3E-05 48.3 8.2 55 239-295 77-139 (376)
392 PRK09424 pntA NAD(P) transhydr 88.5 0.95 2.1E-05 51.8 6.7 33 48-80 166-198 (509)
393 PRK14618 NAD(P)H-dependent gly 88.5 0.6 1.3E-05 50.5 5.0 33 48-80 5-37 (328)
394 PRK04308 murD UDP-N-acetylmura 88.4 0.62 1.3E-05 52.7 5.3 34 48-81 6-39 (445)
395 PRK03369 murD UDP-N-acetylmura 88.3 0.56 1.2E-05 53.7 4.9 32 48-79 13-44 (488)
396 PF03446 NAD_binding_2: NAD bi 88.3 0.63 1.4E-05 44.9 4.5 33 48-80 2-34 (163)
397 PRK13748 putative mercuric red 88.3 0.57 1.2E-05 54.6 5.0 32 48-79 271-302 (561)
398 PRK06130 3-hydroxybutyryl-CoA 88.2 0.65 1.4E-05 49.8 5.0 33 48-80 5-37 (311)
399 PLN02545 3-hydroxybutyryl-CoA 88.2 0.7 1.5E-05 49.2 5.2 33 48-80 5-37 (295)
400 PRK14694 putative mercuric red 88.1 0.66 1.4E-05 52.8 5.3 31 48-78 179-209 (468)
401 PRK14727 putative mercuric red 88.1 0.64 1.4E-05 53.1 5.2 32 48-79 189-220 (479)
402 TIGR02354 thiF_fam2 thiamine b 88.1 0.68 1.5E-05 46.4 4.7 32 48-79 22-54 (200)
403 PRK06719 precorrin-2 dehydroge 87.8 0.76 1.7E-05 44.2 4.7 31 47-77 13-43 (157)
404 PTZ00052 thioredoxin reductase 87.8 0.66 1.4E-05 53.4 5.0 31 48-78 183-213 (499)
405 TIGR01438 TGR thioredoxin and 87.7 0.61 1.3E-05 53.4 4.6 31 48-78 181-211 (484)
406 PRK02472 murD UDP-N-acetylmura 87.3 0.7 1.5E-05 52.2 4.8 33 48-80 6-38 (447)
407 COG3634 AhpF Alkyl hydroperoxi 87.3 0.46 9.9E-06 50.6 3.0 35 46-80 353-387 (520)
408 TIGR02279 PaaC-3OHAcCoADH 3-hy 87.3 0.7 1.5E-05 53.1 4.8 33 48-80 6-38 (503)
409 PRK01368 murD UDP-N-acetylmura 87.1 0.64 1.4E-05 52.8 4.3 31 48-79 7-37 (454)
410 PTZ00318 NADH dehydrogenase-li 86.9 0.78 1.7E-05 51.6 4.8 35 48-82 174-222 (424)
411 PRK14620 NAD(P)H-dependent gly 86.5 0.85 1.8E-05 49.3 4.7 31 49-79 2-32 (326)
412 KOG4405 GDP dissociation inhib 86.5 0.73 1.6E-05 50.0 4.0 46 47-92 8-53 (547)
413 PRK08268 3-hydroxy-acyl-CoA de 86.4 0.83 1.8E-05 52.6 4.7 34 48-81 8-41 (507)
414 PRK11749 dihydropyrimidine deh 86.3 0.91 2E-05 51.5 5.1 34 47-80 273-307 (457)
415 PRK07531 bifunctional 3-hydrox 86.2 0.79 1.7E-05 52.6 4.5 33 48-80 5-37 (495)
416 PRK07417 arogenate dehydrogena 86.1 0.88 1.9E-05 48.0 4.5 32 49-80 2-33 (279)
417 PRK00421 murC UDP-N-acetylmura 86.0 0.77 1.7E-05 52.2 4.3 34 48-81 8-42 (461)
418 PRK08306 dipicolinate synthase 86.0 1.1 2.3E-05 47.9 5.1 34 47-80 152-185 (296)
419 PF01494 FAD_binding_3: FAD bi 85.9 1.1 2.3E-05 48.2 5.1 44 256-299 125-174 (356)
420 PRK15057 UDP-glucose 6-dehydro 85.5 0.98 2.1E-05 50.1 4.7 31 49-80 2-32 (388)
421 PRK11730 fadB multifunctional 85.5 0.79 1.7E-05 55.0 4.2 33 48-80 314-346 (715)
422 PRK02006 murD UDP-N-acetylmura 85.5 0.95 2.1E-05 52.0 4.7 33 48-80 8-40 (498)
423 TIGR02023 BchP-ChlP geranylger 85.3 59 0.0013 35.8 18.8 37 454-490 264-303 (388)
424 PRK12778 putative bifunctional 85.3 1 2.3E-05 54.5 5.1 33 48-80 571-604 (752)
425 TIGR01318 gltD_gamma_fam gluta 85.2 1.9 4E-05 49.2 6.9 34 47-80 282-316 (467)
426 cd05191 NAD_bind_amino_acid_DH 85.1 1.6 3.4E-05 37.2 4.8 31 48-78 24-55 (86)
427 cd01075 NAD_bind_Leu_Phe_Val_D 85.0 1.3 2.9E-05 44.3 4.9 33 48-80 29-61 (200)
428 PRK06223 malate dehydrogenase; 84.9 1.2 2.7E-05 47.6 5.0 33 48-80 3-36 (307)
429 PLN02353 probable UDP-glucose 84.8 1.1 2.3E-05 51.1 4.6 33 48-80 2-36 (473)
430 PRK00141 murD UDP-N-acetylmura 84.8 1.1 2.4E-05 51.2 4.8 32 48-79 16-47 (473)
431 PRK12549 shikimate 5-dehydroge 84.8 1.2 2.7E-05 47.2 4.8 32 48-79 128-160 (284)
432 cd05311 NAD_bind_2_malic_enz N 84.8 1.4 3E-05 45.1 5.0 32 48-79 26-60 (226)
433 cd00401 AdoHcyase S-adenosyl-L 84.7 1.3 2.7E-05 49.5 5.0 33 48-80 203-235 (413)
434 TIGR02437 FadB fatty oxidation 84.6 1.1 2.3E-05 53.9 4.7 34 47-80 313-346 (714)
435 PTZ00082 L-lactate dehydrogena 84.4 1.5 3.2E-05 47.4 5.2 35 47-81 6-41 (321)
436 KOG2304 3-hydroxyacyl-CoA dehy 84.3 1 2.2E-05 45.3 3.5 35 46-80 10-44 (298)
437 COG1250 FadB 3-hydroxyacyl-CoA 84.1 1.1 2.5E-05 47.7 4.1 32 48-79 4-35 (307)
438 PRK05675 sdhA succinate dehydr 84.0 19 0.0004 42.3 14.6 40 256-295 140-187 (570)
439 TIGR02853 spore_dpaA dipicolin 83.6 1.6 3.4E-05 46.4 5.0 33 48-80 152-184 (287)
440 PF00899 ThiF: ThiF family; I 83.4 1.2 2.6E-05 41.4 3.6 33 47-79 2-35 (135)
441 KOG1335 Dihydrolipoamide dehyd 83.3 0.59 1.3E-05 50.5 1.6 37 48-84 212-248 (506)
442 COG1893 ApbA Ketopantoate redu 83.3 1.2 2.5E-05 47.9 3.9 34 48-81 1-34 (307)
443 PRK15116 sulfur acceptor prote 83.3 1.6 3.4E-05 45.8 4.7 32 48-79 31-63 (268)
444 TIGR02441 fa_ox_alpha_mit fatt 83.1 1.1 2.5E-05 53.8 4.1 33 48-80 336-368 (737)
445 TIGR00561 pntA NAD(P) transhyd 83.1 1.6 3.5E-05 49.9 5.0 33 48-80 165-197 (511)
446 PF00056 Ldh_1_N: lactate/mala 83.1 2 4.3E-05 40.5 4.9 33 48-80 1-36 (141)
447 cd05291 HicDH_like L-2-hydroxy 82.9 1.6 3.5E-05 46.7 4.8 32 49-80 2-35 (306)
448 TIGR01915 npdG NADPH-dependent 82.8 1.6 3.5E-05 44.2 4.6 32 48-79 1-33 (219)
449 TIGR01790 carotene-cycl lycope 82.5 81 0.0018 34.5 18.5 41 256-297 99-141 (388)
450 PF02254 TrkA_N: TrkA-N domain 82.5 2.1 4.5E-05 38.3 4.7 31 50-80 1-31 (116)
451 PRK01390 murD UDP-N-acetylmura 82.4 1.4 3.1E-05 50.0 4.4 32 48-79 10-41 (460)
452 TIGR02440 FadJ fatty oxidation 82.4 1.7 3.6E-05 52.1 5.1 34 47-80 304-338 (699)
453 PRK00683 murD UDP-N-acetylmura 82.4 1.5 3.3E-05 49.1 4.6 33 48-80 4-36 (418)
454 TIGR00507 aroE shikimate 5-deh 82.1 1.9 4.1E-05 45.3 4.9 33 47-79 117-149 (270)
455 PRK03803 murD UDP-N-acetylmura 81.8 1.6 3.5E-05 49.4 4.5 33 48-80 7-39 (448)
456 TIGR01505 tartro_sem_red 2-hyd 81.7 1.6 3.4E-05 46.3 4.2 32 49-80 1-32 (291)
457 PRK11154 fadJ multifunctional 81.2 1.6 3.6E-05 52.3 4.5 34 47-80 309-343 (708)
458 cd01078 NAD_bind_H4MPT_DH NADP 81.0 2.3 5.1E-05 42.1 4.9 32 48-79 29-61 (194)
459 PRK12548 shikimate 5-dehydroge 81.0 2.4 5.3E-05 45.0 5.3 33 48-80 127-160 (289)
460 PRK12779 putative bifunctional 80.9 1.9 4.1E-05 53.4 5.0 34 47-80 447-480 (944)
461 COG1252 Ndh NADH dehydrogenase 80.9 0.89 1.9E-05 50.4 1.9 39 256-296 223-261 (405)
462 PTZ00117 malate dehydrogenase; 80.8 2.3 5E-05 45.9 5.1 35 46-80 4-39 (319)
463 PRK15461 NADH-dependent gamma- 80.6 2 4.3E-05 45.8 4.4 33 48-80 2-34 (296)
464 TIGR00936 ahcY adenosylhomocys 80.6 2.2 4.8E-05 47.4 4.9 33 48-80 196-228 (406)
465 PRK07688 thiamine/molybdopteri 80.6 2.3 5E-05 46.3 5.0 32 48-79 25-57 (339)
466 PRK03815 murD UDP-N-acetylmura 80.5 1.8 3.9E-05 48.3 4.2 31 48-79 1-31 (401)
467 cd01065 NAD_bind_Shikimate_DH 80.4 2.7 5.8E-05 39.7 4.9 33 48-80 20-53 (155)
468 PRK08644 thiamine biosynthesis 80.3 2.5 5.5E-05 42.7 4.9 32 48-79 29-61 (212)
469 PRK12475 thiamine/molybdopteri 80.1 2.3 5E-05 46.2 4.8 32 48-79 25-57 (338)
470 cd01339 LDH-like_MDH L-lactate 80.0 2 4.4E-05 45.8 4.4 31 50-80 1-32 (300)
471 cd05293 LDH_1 A subgroup of L- 79.9 2.7 5.8E-05 45.2 5.2 34 47-80 3-38 (312)
472 PLN02172 flavin-containing mon 79.8 1.8 4E-05 49.2 4.1 33 47-79 204-236 (461)
473 PRK03806 murD UDP-N-acetylmura 79.7 2.3 4.9E-05 48.0 4.8 33 48-80 7-39 (438)
474 PRK12814 putative NADPH-depend 79.6 2.2 4.8E-05 50.7 4.9 39 454-494 467-505 (652)
475 PF13478 XdhC_C: XdhC Rossmann 79.4 2.1 4.4E-05 40.2 3.6 31 50-80 1-31 (136)
476 PRK05562 precorrin-2 dehydroge 79.0 2.9 6.2E-05 42.6 4.7 31 47-77 25-55 (223)
477 PRK11559 garR tartronate semia 78.9 2.6 5.5E-05 44.8 4.6 33 48-80 3-35 (296)
478 PRK00066 ldh L-lactate dehydro 78.8 3 6.5E-05 44.9 5.2 34 47-80 6-41 (315)
479 cd01487 E1_ThiF_like E1_ThiF_l 78.8 3.1 6.7E-05 40.7 4.8 31 49-79 1-32 (174)
480 PRK09496 trkA potassium transp 78.7 2.6 5.6E-05 47.6 4.9 34 48-81 1-34 (453)
481 PTZ00142 6-phosphogluconate de 78.6 2.4 5.1E-05 48.3 4.5 34 48-81 2-35 (470)
482 PRK12810 gltD glutamate syntha 78.4 2.7 5.9E-05 47.9 5.0 37 454-492 431-467 (471)
483 TIGR02356 adenyl_thiF thiazole 78.4 3.2 6.8E-05 41.6 4.9 33 47-79 21-54 (202)
484 KOG2495 NADH-dehydrogenase (ub 78.3 0.95 2.1E-05 49.7 1.1 74 9-82 180-267 (491)
485 TIGR02355 moeB molybdopterin s 78.3 3.1 6.6E-05 43.0 4.8 32 48-79 25-57 (240)
486 PRK00258 aroE shikimate 5-dehy 78.2 3.1 6.7E-05 43.9 5.0 33 48-80 124-157 (278)
487 PF00670 AdoHcyase_NAD: S-aden 77.9 2.6 5.7E-05 40.6 3.8 33 48-80 24-56 (162)
488 PRK11199 tyrA bifunctional cho 77.9 2.7 5.7E-05 46.5 4.5 32 48-79 99-131 (374)
489 TIGR01317 GOGAT_sm_gam glutama 77.8 3.1 6.6E-05 47.7 5.2 36 47-82 283-319 (485)
490 PRK05476 S-adenosyl-L-homocyst 77.8 3 6.5E-05 46.7 4.9 33 48-80 213-245 (425)
491 TIGR00872 gnd_rel 6-phosphoglu 77.7 3 6.4E-05 44.5 4.7 32 49-80 2-33 (298)
492 PRK12439 NAD(P)H-dependent gly 77.7 3.5 7.6E-05 44.9 5.4 33 45-78 5-37 (341)
493 TIGR01087 murD UDP-N-acetylmur 77.7 2.5 5.5E-05 47.5 4.4 32 49-80 1-32 (433)
494 PRK05690 molybdopterin biosynt 77.3 3.2 6.8E-05 43.0 4.6 32 48-79 33-65 (245)
495 PRK12769 putative oxidoreducta 77.2 5.4 0.00012 47.5 7.2 36 454-491 618-653 (654)
496 TIGR02964 xanthine_xdhC xanthi 77.1 3.5 7.5E-05 42.8 4.9 35 47-81 100-134 (246)
497 TIGR01809 Shik-DH-AROM shikima 76.9 3.5 7.6E-05 43.6 4.9 32 48-79 126-158 (282)
498 PRK09599 6-phosphogluconate de 76.8 3.3 7.1E-05 44.2 4.8 32 49-80 2-33 (301)
499 PRK08328 hypothetical protein; 76.6 3.3 7.2E-05 42.4 4.5 31 48-78 28-59 (231)
500 cd01483 E1_enzyme_family Super 76.2 3.9 8.4E-05 38.3 4.6 31 49-79 1-32 (143)
No 1
>PLN03000 amine oxidase
Probab=100.00 E-value=9.7e-118 Score=1026.27 Aligned_cols=700 Identities=73% Similarity=1.181 Sum_probs=626.7
Q ss_pred CCcccchhhHhHHHHHHHHHHHhhhccccccccccccCCCCCCCCCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCC
Q 004944 2 FTESVPKHCHSLLDSAYNYLVSNGYINFGVAPEIKEKIPVEPSSNKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (722)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~p~~~~~~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r 81 (722)
++..|+.+|.+|+..+|+||..|||||||.+..+....+... ...+|+|||||++||+||+.|.+.|++|+|||++++
T Consensus 141 a~~~~~~~~~~l~~~~~~~L~r~G~in~g~~~~~~~~~~~~~--~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~r 218 (881)
T PLN03000 141 FLGSIPKHCSSLLDSAYNYLVTHGYINFGIAQAIKDKFPAQS--SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKR 218 (881)
T ss_pred HhhhcchhHHHHHHHHHHHHHHcCcccHHHHHHHHhhccccC--CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCc
Confidence 467789999999999999999999999999988876555422 348999999999999999999999999999999999
Q ss_pred cceeeeeeecCCCCCCCcceEeeccceEEcCCCCcHHHHHHHHhCCCeeeecCCcceEecCCcccChhhhHHHHHHHHHH
Q 004944 82 AGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLGSLLHKVRDKCPLYRLDGNSVDPEIDMKVEADFNRL 161 (722)
Q Consensus 82 ~GGr~~T~~~~g~~gn~~~~~~D~Ga~~~~~~~~~~l~~L~~eLGl~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~l 161 (722)
+|||++|.+..+. ..++.+|+|++|+++.+.|++..|++++|++.+.....+.+|..+|+.++...+......+..+
T Consensus 219 iGGRi~T~~~~g~---~~~~~~DlGas~i~g~~~npl~~L~~qlgl~l~~~~~~~~ly~~~Gk~v~~~~~~~ve~~fn~l 295 (881)
T PLN03000 219 PGGRVYTKKMEAN---RVGAAADLGGSVLTGTLGNPLGIIARQLGSSLYKVRDKCPLYRVDGKPVDPDVDLKVEVAFNQL 295 (881)
T ss_pred CCCCcceecccCC---CCceEeecCCeEEeCCCccHHHHHHHHcCCceeecCCCCeEEEeCCcCCchhhhhhHHHHHHHH
Confidence 9999999998753 2346899999999999999999999999999888877888999999988776666666677888
Q ss_pred HHHHHHHHHHhhccccCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhhhccchhhHHHHHHhhccCCCCCCCCCeee
Q 004944 162 LDKASRLRQLMGEVAMDVSLGSALETFWRVYWDSGNAEAMNLFNWHLANLEYANASLLSKLSLAFWDQDDPYDMGGDHCF 241 (722)
Q Consensus 162 l~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~~~~ 241 (722)
++.+.+++........+.++.++++.+.++.......+.+.++.|++..+++..+..+..++..+|.+...+..++.+++
T Consensus 296 Ld~~~~lr~l~~~~~~D~SLg~aLe~~~~~~g~~~t~e~~~Ll~w~lanLE~~~as~ls~LSl~~wdqd~~~e~~G~~~~ 375 (881)
T PLN03000 296 LDKASKLRQLMGDVSMDVSLGAALETFRQVSGNDVATEEMGLFNWHLANLEYANAGLVSKLSLAFWDQDDPYDMGGDHCF 375 (881)
T ss_pred HHHHHHHHHHhcccCcCCcHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHhcccccCHHHHHHHHhhhcccccCCCceEE
Confidence 87777777776666778899988888888777777888888889999999998888888899888887656666778899
Q ss_pred eCCChHHHHHHHHHcCCcccCceEEEEEecCCcEEEEECCEEEEeCEEEEcCChhhhhcCCcccCCCCCHHHHHHHHhcC
Q 004944 242 LPGGNGRLVQALVENVPILYEKTVHTIRYGSDGVQVLAGSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLG 321 (722)
Q Consensus 242 ~~gG~~~L~~aLa~~l~I~ln~~V~~I~~~~~~v~V~~~G~~~~AD~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ai~~l~ 321 (722)
++||+++|+++|++.++|++|++|++|.+.+++|+|++++++++||+||+|+|+.+++...|.|.|+||+.+.++|++++
T Consensus 376 v~GG~~~LieaLa~~L~I~Ln~~Vt~I~~~~dgV~V~~~~~~~~AD~VIvTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~ 455 (881)
T PLN03000 376 LPGGNGRLVQALAENVPILYEKTVQTIRYGSNGVKVIAGNQVYEGDMVLCTVPLGVLKNGSIKFVPELPQRKLDCIKRLG 455 (881)
T ss_pred eCCCHHHHHHHHHhhCCcccCCcEEEEEECCCeEEEEECCcEEEeceEEEcCCHHHHhhCceeeCCCCCHHHHHHHHcCC
Confidence 99999999999999999999999999999999999988667899999999999999997679999999999999999999
Q ss_pred CCceeEEEEEcCCCcccCCCCCceeeecCCCCCcceEEEeeccccCCCcEEEEEecchhhhhhcCCCHHHHHHHHHHHHH
Q 004944 322 YGLLNKVAMLFPYVFWETDLDTFGHLTDDSSSRGEFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILK 401 (722)
Q Consensus 322 ~~~~~kV~l~f~~~~w~~~~~~~g~l~~~~~~~~~~~~~~~~~~p~g~~vl~~~v~g~~a~~~~~ls~eel~~~vl~~L~ 401 (722)
|+.+.||++.|+++||..+...||.+.++...++.+++++++..+.+.++|++|++|+.+..++.++++++++.++++|+
T Consensus 456 ~G~l~KViL~Fd~~FW~~d~~~FG~l~~~~~~rg~~~~f~s~sp~~G~pVLvafv~Gd~A~~le~lSdeE~ve~vl~~Lr 535 (881)
T PLN03000 456 FGLLNKVAMLFPYVFWSTDLDTFGHLTEDPNYRGEFFLFYSYAPVAGGPLLIALVAGEAAHKFETMPPTDAVTRVLHILR 535 (881)
T ss_pred CcceEEEEEEeCCccccCCCCceeEEecCCCCCceeEEEeCCCCCCCCcEEEEEecCchhHHhhcCCHHHHHHHHHHHHH
Confidence 99999999999999999887889998876655666777777766678889999999999999999999999999999999
Q ss_pred hhcCCCCCCCCCCceEEEecCCCCCCCCcccCCCCCCCCCccHHHHhcccCCCcEEEcccccccccCccchHHHHHHHHH
Q 004944 402 GIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGLRE 481 (722)
Q Consensus 402 ~i~~~~~~~v~~p~~~~~~rW~~~p~~~G~y~~~~pG~~~~~~~~l~~pv~~~~L~fAGd~ts~~~~g~~eGAi~SG~~A 481 (722)
++|++.+.+++.|+.+.+++|..|||+.|+|+++.||+....++.+++|+.+++||||||+|+..|+||||||+.||+||
T Consensus 536 kifg~~~~~vp~Pv~~ivtrW~~DPysrGSYS~~~pG~~~~~~d~LaePv~~GRIfFAGEaTs~~~~GTVhGAieSGlRA 615 (881)
T PLN03000 536 GIYEPQGINVPDPLQTVCTRWGGDPFSLGSYSNVAVGASGDDYDILAESVGDGRLFFAGEATTRRYPATMHGAFVTGLRE 615 (881)
T ss_pred HHhCccccccCCceEEEEccCCCCCCCCccccCCCCCCchHHHHHHhCcCCCCcEEEeehHHhCCCCeeHHHHHHHHHHH
Confidence 99986555678999999999999999999999999999888899999998668999999999988999999999999999
Q ss_pred HHHHHHHHhhhhhhhhhccCCCCCCCccccchhhhccCCCCCCCcCceEEeccCCCCCCCCceEEEEEecCCCCCCCC--
Q 004944 482 TAKMAHCANARALRMKVKVGKIPSKNAYSCASALTDLFREPDLEFGSFSVIFSWKNPDPKSPSILRVTFNDPRKKNHG-- 559 (722)
Q Consensus 482 A~~Il~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 559 (722)
|++|++.+..+.... +.+..++++...++..|.|||++|||+||+|||||++.++||+|++||||+|+++++++..
T Consensus 616 A~eIl~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (881)
T PLN03000 616 AANMAQSAKARGIRK--RIDRNPSKNAHSCAILLADLFRDPDLEFGSFAIIFSRRNPDPKSPAILRVTLSEPRKRNEDPK 693 (881)
T ss_pred HHHHHHHhhhccCCc--ccccCccccccchhHHHHHHhhCcCccccceEEEecCCCCCCCCceeEEEEeccccccccccc
Confidence 999999999998887 8899999999999999999999999999999999999999999999999999999998653
Q ss_pred CCCCchhHHHHhhhhccccCceEEEEEeccHHHHHHHHhhhCCchhHHHHHHHhcCceeeecCCCCCChhHHHHHHHHHh
Q 004944 560 DQPHSNKRLFEQLQSHFNQQQQLHVYTLLTRQQVLDLREVRGGDEMRLNFLCEKLGVKLIGRKGLGSTADSVISSIKAER 639 (722)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (722)
.|.||||.+|||+|+||++|++|||||+||||||.+|+++++|||+||+|||++|||||||||+|+++|++|||+||++|
T Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 773 (881)
T PLN03000 694 ADQHSNKILFQQLQSHFNQQQQIQVYTLLTRQQALDLREVRGGDEKRLNYLCETLGVKLVGRKGLGPGADSVIASIKAER 773 (881)
T ss_pred hhhhhhhhhhccccccccCcceEEEEEEeeHHHHHHHHHhhCCcHHHHHHHHHhcCeeEeecccCCccHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -ccccccccccccccccccccccchhHHhHhhh-------heecccCCCcCCCCCCCCCCCccccccccccCCCCCCCCC
Q 004944 640 -GIRKQTSTFSASKLGISKLKTGTLKQKMIRKA-------KIVRNVKKSVPSPNKLTAPPNLKVSSECMITNQVPPTSSC 711 (722)
Q Consensus 640 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 711 (722)
..|++.+++.++|+||-...+++.|+|+|+.. .-+||.|.|||+-| || .|.....+++++|+.+.+..+
T Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~ 850 (881)
T PLN03000 774 TGNKLPSSSTSGTKSGMKPKAAGSKRKKVVSNVGGLMPRNSNMRNGNSSIPPSN-NM--GNGSGLVPRPNLNMGNGSGLV 850 (881)
T ss_pred hcCCCCCccccccccCCCccccchhHHHHHHhccCcccCCccccCCCCCCCCCC-CC--CCCCCcccCCCcCcCCCCCcc
Confidence 56778899999999994444455777999832 35788888887654 78 788888888888887755444
No 2
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=100.00 E-value=3.6e-98 Score=866.01 Aligned_cols=611 Identities=61% Similarity=1.018 Sum_probs=535.8
Q ss_pred CCcccchhhHhHHHHHHHHHHHhhhcccccccccccc-CCCCCCCCCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 2 FTESVPKHCHSLLDSAYNYLVSNGYINFGVAPEIKEK-IPVEPSSNKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~-~p~~~~~~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
++.+|+.+|.+|+..+|+||+.|||||||+.+..... .......+..+|+|||||++||+||++|++.|++|+|||+++
T Consensus 192 a~~~~~~~~~~l~~~~~~~l~~~g~in~gv~~~~~~~~~~~~~~~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~ 271 (808)
T PLN02328 192 ALESIRAEHKNLVDSAYNFLLEHGYINFGVAPVIKEAQLRSFEGVEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRA 271 (808)
T ss_pred HHhhcchhhHHHHHHHHHHHhccCceeeeccccccccccCCCCCCCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccc
Confidence 4567888999999999999999999999999876531 122223345899999999999999999999999999999999
Q ss_pred CcceeeeeeecCCCCCCCcceEeeccceEEcCCCCcHHHHHHHHhCCCeeeecCCcceEecCCcccChhhhHHHHHHHHH
Q 004944 81 RAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLGSLLHKVRDKCPLYRLDGNSVDPEIDMKVEADFNR 160 (722)
Q Consensus 81 r~GGr~~T~~~~g~~gn~~~~~~D~Ga~~~~~~~~~~l~~L~~eLGl~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~ 160 (722)
++|||+.|.+..|. +..+.+|+|++|+++...|++..+++++|++.+..+..+.++..+|..++...+......+..
T Consensus 272 r~GGr~~t~~~~g~---~~~~~~d~Gas~i~g~~~npl~~l~~~lgl~~~~~~~~~~~~~~dG~~~~~~~~~~v~~~f~~ 348 (808)
T PLN02328 272 RPGGRVKTMKMKGD---GVVAAADLGGSVLTGINGNPLGVLARQLGLPLHKVRDICPLYLPDGKAVDAEIDSKIEASFNK 348 (808)
T ss_pred cCCCcccccccCCC---CcceeccCCceeecCCCccHHHHHHHHcCCceEecCCCceEEeCCCcCcchhhhhhHHHHHHH
Confidence 99999999998764 334579999999999988999999999999988888778889999998876666555677788
Q ss_pred HHHHHHHHHHHhhcc--ccCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhhhccchhhHHHHHHhhccCCCCCCCCC
Q 004944 161 LLDKASRLRQLMGEV--AMDVSLGSALETFWRVYWDSGNAEAMNLFNWHLANLEYANASLLSKLSLAFWDQDDPYDMGGD 238 (722)
Q Consensus 161 ll~~~~~~~~~~~~~--~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~ 238 (722)
+++...+++..+... ..+.++.++++.+....+...++..+.++.|++..+++..+..+..+++..|.+.+.+..++.
T Consensus 349 lL~~~~klr~~~~~~~~~~D~SLg~~le~~~~~~~~~~~~~e~~Ll~w~lanlE~~~gs~ls~LSl~~w~qd~~~e~~G~ 428 (808)
T PLN02328 349 LLDRVCKLRQAMIEEVKSVDVNLGTALEAFRHVYKVAEDPQERMLLNWHLANLEYANASLMSNLSMAYWDQDDPYEMGGD 428 (808)
T ss_pred HHHHHHHHHHhhhhcccccCcCHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHhccchhhHHHHHhhhhhccccccCCCe
Confidence 887776665543322 356889999887766555556778888999999999999988899999888887666667778
Q ss_pred eeeeCCChHHHHHHHHHcCCcccCceEEEEEecCCcEEEEECCEEEEeCEEEEcCChhhhhcCCcccCCCCCHHHHHHHH
Q 004944 239 HCFLPGGNGRLVQALVENVPILYEKTVHTIRYGSDGVQVLAGSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIK 318 (722)
Q Consensus 239 ~~~~~gG~~~L~~aLa~~l~I~ln~~V~~I~~~~~~v~V~~~G~~~~AD~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ai~ 318 (722)
+++++||+++|+++|++.+.|++|++|++|.+.+++|.|+.+|++++||+||+|+|+.+++...|.|.|+||+.+.++++
T Consensus 429 ~~~v~GG~~~Li~aLa~~L~I~ln~~V~~I~~~~dgV~V~~~G~~~~AD~VIvTvPl~vLk~~~I~F~P~LP~~K~~AI~ 508 (808)
T PLN02328 429 HCFIPGGNDTFVRELAKDLPIFYERTVESIRYGVDGVIVYAGGQEFHGDMVLCTVPLGVLKKGSIEFYPELPQRKKDAIQ 508 (808)
T ss_pred EEEECCcHHHHHHHHHhhCCcccCCeeEEEEEcCCeEEEEeCCeEEEcCEEEECCCHHHHhhcccccCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999998866888999999999999999987678899999999999999
Q ss_pred hcCCCceeEEEEEcCCCcccCCCCCceeeecCCCCCcceEEEeeccccCCCcEEEEEecchhhhhhcCCCHHHHHHHHHH
Q 004944 319 RLGYGLLNKVAMLFPYVFWETDLDTFGHLTDDSSSRGEFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQ 398 (722)
Q Consensus 319 ~l~~~~~~kV~l~f~~~~w~~~~~~~g~l~~~~~~~~~~~~~~~~~~p~g~~vl~~~v~g~~a~~~~~ls~eel~~~vl~ 398 (722)
+++|+++.||++.|+++||......+|.+..+....+.+++++++....+.+++++|++|+.+..+..++++++++.+++
T Consensus 509 ~l~yG~~~KV~L~F~~~FW~~~~d~fG~l~~d~s~rG~~~lf~s~s~~~G~~vLvafv~G~~A~~~e~lsdeE~v~~vL~ 588 (808)
T PLN02328 509 RLGYGLLNKVALLFPYNFWGGEIDTFGHLTEDPSMRGEFFLFYSYSSVSGGPLLIALVAGDAAVKFETLSPVESVKRVLQ 588 (808)
T ss_pred cCCCcceEEEEEEeCCccccCCCCceEEEeecCCCCceEEEEecCCCCCCCcEEEEEecChhhHHHhcCCHHHHHHHHHH
Confidence 99999999999999999999877788988776656677777888776677899999999999999999999999999999
Q ss_pred HHHhhcCCCCCCCCCCceEEEecCCCCCCCCcccCCCCCCCCCccHHHHhcccCCCcEEEcccccccccCccchHHHHHH
Q 004944 399 ILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSG 478 (722)
Q Consensus 399 ~L~~i~~~~~~~v~~p~~~~~~rW~~~p~~~G~y~~~~pG~~~~~~~~l~~pv~~~~L~fAGd~ts~~~~g~~eGAi~SG 478 (722)
+|+++|++.+..++.|....+++|..+||++|+|+++.||+....++.+++|+.+++||||||+|+..|+||||||+.||
T Consensus 589 ~Lr~ifgp~~~~vp~P~~~~vtrW~~DP~s~GSYS~~~pG~~~~~~~~LaePv~~GRL~FAGEaTs~~~~GtVhGAi~SG 668 (808)
T PLN02328 589 ILRGIFHPKGIVVPDPVQAVCTRWGKDCFTYGSYSYVAVGSSGDDYDILAESVGDGRVFFAGEATNKQYPATMHGAFLSG 668 (808)
T ss_pred HHHHHhCcccccccCcceEEEecCCCCCCcCCCCCCCCCCCchhHHHHHhccCCCCCEEEEEhhHhCCCCeEhHHHHHHH
Confidence 99999986444567899999999999999999999999998877788999998668999999999988999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhhccCCCCCCCccccchhhhccCCCCCCCcCceEEeccCCCCCCCCceEEEEEecCCCCCCC
Q 004944 479 LRETAKMAHCANARALRMKVKVGKIPSKNAYSCASALTDLFREPDLEFGSFSVIFSWKNPDPKSPSILRVTFNDPRKKNH 558 (722)
Q Consensus 479 ~~AA~~Il~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (722)
++||++|++.+..+......+.+..++ ++..|.|||++|||+||+|||||+|.++||+|++||||+|+.+++++
T Consensus 669 lRAA~eIl~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 742 (808)
T PLN02328 669 MREAANILRVARRRSLCIDDKVNNDEE-----EDDCLDQLFDTPDLTFGSFSILFDPRSNDPESLSLLRVKFQGEKPDS- 742 (808)
T ss_pred HHHHHHHHHHHhhcccCCcccccccch-----hhhHHHHHhcCcCccccceEEEecCCCCCCCCceeEEEEeccCCCCc-
Confidence 999999999998887664334444333 56779999999999999999999999999999999999999988853
Q ss_pred CCCCCchhHHHHhhhhccccCceEEEEEeccHHHHHHHHhhhCCchhHHHHHHHhcCceeeecCCCCCChhHHHHHHHHH
Q 004944 559 GDQPHSNKRLFEQLQSHFNQQQQLHVYTLLTRQQVLDLREVRGGDEMRLNFLCEKLGVKLIGRKGLGSTADSVISSIKAE 638 (722)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (722)
++|||||+||||||.+|+++ +|||+||+|||++|||||||||+|+++|++|||+||++
T Consensus 743 ---------------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (808)
T PLN02328 743 ---------------------CFLCLYGLVSRKQAIELGEL-DDDGKRNEYLYEKFQVVLVGRKGLSQEGESLISSIKEA 800 (808)
T ss_pred ---------------------ccEEEEEeeeHHHHHHHHHc-CCcHHHHHHHHHhcCeEEeecccccccHHHHHHHHHHh
Confidence 66999999999999999998 89999999999999999999999999999999999999
Q ss_pred hcccc
Q 004944 639 RGIRK 643 (722)
Q Consensus 639 ~~~~~ 643 (722)
|+++.
T Consensus 801 ~~~~~ 805 (808)
T PLN02328 801 RLNLQ 805 (808)
T ss_pred hhccc
Confidence 98864
No 3
>PLN02529 lysine-specific histone demethylase 1
Probab=100.00 E-value=5.1e-98 Score=862.37 Aligned_cols=620 Identities=57% Similarity=0.964 Sum_probs=541.6
Q ss_pred CCcccchhhHhHHHHHHHHHHHhhhccccccccccccCCCCCCCCCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCC
Q 004944 2 FTESVPKHCHSLLDSAYNYLVSNGYINFGVAPEIKEKIPVEPSSNKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (722)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~p~~~~~~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r 81 (722)
+++.+..++.++|..+|+||+.+|+||+|+.+......+. ....++|+|||||++||+||+.|+++|++|+|||++++
T Consensus 117 a~~~~~~~i~~ci~~c~~~l~~~~~inc~vnp~~~~~~~~--~~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~ 194 (738)
T PLN02529 117 IKETVSSEYEHLISAAYDFLLYNGYINFGVSPSFASPIPE--EGTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNR 194 (738)
T ss_pred HhhhchhhHHHHHHHHHHHHHhCCCcceeecccccCCCCc--ccCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCcc
Confidence 4567889999999999999999999999999876443332 23458999999999999999999999999999999999
Q ss_pred cceeeeeeecCCCCCCCcceEeeccceEEcCCCCcHHHHHHHHhCCCeeeecCCcceEecCCcccChhhhHHHHHHHHHH
Q 004944 82 AGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLGSLLHKVRDKCPLYRLDGNSVDPEIDMKVEADFNRL 161 (722)
Q Consensus 82 ~GGr~~T~~~~g~~gn~~~~~~D~Ga~~~~~~~~~~l~~L~~eLGl~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~l 161 (722)
+|||++|.+..+. +..+.+|+|++|+++.+.|++..+++++|++.++.+..+.+|..+|..++...+..+...|..+
T Consensus 195 ~GG~~~t~~~~~~---g~~~~~DlGaswi~g~~~npl~~la~~lgl~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~~ 271 (738)
T PLN02529 195 PGGRVYTQKMGRK---GQFAAVDLGGSVITGIHANPLGVLARQLSIPLHKVRDNCPLYKPDGALVDKEIDSNIEFIFNKL 271 (738)
T ss_pred CcCceeeecccCC---CCceEEecCCeeccccccchHHHHHHHhCCCccccCCCceEEeCCCcCcchhhhhhHHHHHHHH
Confidence 9999999987532 1225899999999999999999999999999888877788899999988776666555567777
Q ss_pred HHHHHHHHHHhhccccCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhhhccchhhHHHHHHhhccCCCCCCCCCeee
Q 004944 162 LDKASRLRQLMGEVAMDVSLGSALETFWRVYWDSGNAEAMNLFNWHLANLEYANASLLSKLSLAFWDQDDPYDMGGDHCF 241 (722)
Q Consensus 162 l~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~~~~ 241 (722)
++....+...+....++.|+.++++.+.+......++..+.++.|+...+++..+..++.+++.+|.+...+..++.+++
T Consensus 272 l~~~~~l~~~~~~~~~d~Sl~~~le~~~~~~~~~~t~~e~~ll~~~~~~le~a~~~~~s~LSl~~~~~~~~~e~~G~~~~ 351 (738)
T PLN02529 272 LDKVTELRQIMGGFANDISLGSVLERLRQLYGVARSTEERQLLDWHLANLEYANAGCLSDLSAAYWDQDDPYEMGGDHCF 351 (738)
T ss_pred HHHHHHHHHhcccCccCCCHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhceecCCChHHhhhhHhhhccccccCCceEE
Confidence 77666665555545678899999987766555557778888999999888888888889999999987766777888999
Q ss_pred eCCChHHHHHHHHHcCCcccCceEEEEEecCCcEEEEECCEEEEeCEEEEcCChhhhhcCCcccCCCCCHHHHHHHHhcC
Q 004944 242 LPGGNGRLVQALVENVPILYEKTVHTIRYGSDGVQVLAGSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLG 321 (722)
Q Consensus 242 ~~gG~~~L~~aLa~~l~I~ln~~V~~I~~~~~~v~V~~~G~~~~AD~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ai~~l~ 321 (722)
+.||+++|+++|+++++|++|++|++|.+++++|+|++++++++||+||+|+|++++++..|.|.|+||+.+.+++++++
T Consensus 352 i~GG~~~Li~aLA~~L~IrLnt~V~~I~~~~dGVtV~t~~~~~~AD~VIVTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~ 431 (738)
T PLN02529 352 LAGGNWRLINALCEGVPIFYGKTVDTIKYGNDGVEVIAGSQVFQADMVLCTVPLGVLKKRTIRFEPELPRRKLAAIDRLG 431 (738)
T ss_pred ECCcHHHHHHHHHhcCCEEcCCceeEEEEcCCeEEEEECCEEEEcCEEEECCCHHHHHhccccCCCCCCHHHHHHHHcCC
Confidence 99999999999999999999999999999999999988778999999999999999997678999999999999999999
Q ss_pred CCceeEEEEEcCCCcccCCCCCceeeecCCCCCcceEEEeeccccCCCcEEEEEecchhhhhhcCCCHHHHHHHHHHHHH
Q 004944 322 YGLLNKVAMLFPYVFWETDLDTFGHLTDDSSSRGEFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILK 401 (722)
Q Consensus 322 ~~~~~kV~l~f~~~~w~~~~~~~g~l~~~~~~~~~~~~~~~~~~p~g~~vl~~~v~g~~a~~~~~ls~eel~~~vl~~L~ 401 (722)
|+++.||++.|+++||..+...+|.+.......+.++++++.+.+++.+++++|+.|+.+..+..++++++++.++++|+
T Consensus 432 yG~v~KV~L~F~~~FW~~~~~~fG~l~~~~~~~g~~~~~~~~~~~~ggpvLvafv~G~~A~~le~lsdeeii~~vl~~L~ 511 (738)
T PLN02529 432 FGLLNKVAMVFPSVFWGEELDTFGCLNESSNKRGEFFLFYGYHTVSGGPALVALVAGEAAQRFENTDPSTLLHRVLSVLR 511 (738)
T ss_pred CceeEEEEEEeCCccccCCCCceEEEeccCCCCceEEEEecCCCCCCCCEEEEEECchhhHHHhcCCHHHHHHHHHHHHH
Confidence 99999999999999998776778888765555566667777766667789999999999999999999999999999999
Q ss_pred hhcCCCCCCCCCCceEEEecCCCCCCCCcccCCCCCCCCCccHHHHhcccCCCcEEEcccccccccCccchHHHHHHHHH
Q 004944 402 GIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGLRE 481 (722)
Q Consensus 402 ~i~~~~~~~v~~p~~~~~~rW~~~p~~~G~y~~~~pG~~~~~~~~l~~pv~~~~L~fAGd~ts~~~~g~~eGAi~SG~~A 481 (722)
++|++.+..++.|..+.+++|..+||+.|+|+++.||.....++.+.+|+. ++||||||+|+..|+||||||+.||++|
T Consensus 512 ~ifgp~~~~vp~Pi~~v~t~W~~DP~s~GsYS~~~~g~~~~d~~~La~pv~-grL~FAGEaTs~~~pgtVeGAi~SG~RA 590 (738)
T PLN02529 512 GIYNPKGINVPDPIQTICTRWGSDPLSYGSYSHVRVQSSGSDYDILAESVS-GRLFFAGEATTRQYPATMHGAFLSGLRE 590 (738)
T ss_pred HHhCccccccCCceEEEEccCCcCCCCCCCcccCCCCCchhHHHHHhCCCC-CCEEEEEHHHhCCCCeEeHHHHHHHHHH
Confidence 999865456788999999999999999999999999887666788888863 8999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhhccCCCCCCCccccchhhhccCCCCCCCcCceEEeccCCCCCCCCceEEEEEecCCCCCCCCCC
Q 004944 482 TAKMAHCANARALRMKVKVGKIPSKNAYSCASALTDLFREPDLEFGSFSVIFSWKNPDPKSPSILRVTFNDPRKKNHGDQ 561 (722)
Q Consensus 482 A~~Il~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (722)
|++|++.++.+.... .+...++...+++.|.|||++|||+||+|||||+|.++||+|++||||+|+++++++
T Consensus 591 A~eIl~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 662 (738)
T PLN02529 591 ASRILHVARSQQSNS----RKSMQRNSGVSNDVLIDLFKRPDLAFGKFSFIFNPLTEDPKSMGIMRVTFDNSGDDL---- 662 (738)
T ss_pred HHHHHHHHhhhhccc----hhhhhccCCcchHHHHHhhcCccccccceEEEecCCCCCCcCceeEEEEecCCCCCC----
Confidence 999999886544332 234445556688999999999999999999999999999999999999999999853
Q ss_pred CCchhHHHHhhhhccccCceEEEEEeccHHHHHHHHhhhCCchhHHHHHHHhcCceeeecCCCCCChhHHHHHHHHHhcc
Q 004944 562 PHSNKRLFEQLQSHFNQQQQLHVYTLLTRQQVLDLREVRGGDEMRLNFLCEKLGVKLIGRKGLGSTADSVISSIKAERGI 641 (722)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (722)
.++|||||+||||||.+|+...+|||+||+|||++|||||||+++|+++|++|||+||++|++
T Consensus 663 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (738)
T PLN02529 663 -----------------NLPLQLYTVLSREQAHKLQLDEGSNESKLSCLMKNLGLKLMGPSSLVNTGGSLISTIANARRG 725 (738)
T ss_pred -----------------CccEEEEEeeeHHHHHHHHHHhCCcHHHHHHHHHhcCeeEeccccccchHHHHHHHHHHHhhc
Confidence 268999999999999999777799999999999999999999999999999999999999999
Q ss_pred ccccccccccc
Q 004944 642 RKQTSTFSASK 652 (722)
Q Consensus 642 ~~~~~~~~~~~ 652 (722)
|+|+++..+++
T Consensus 726 ~~~~~~~~~~~ 736 (738)
T PLN02529 726 RGRNRVVAGQC 736 (738)
T ss_pred cccceeccccC
Confidence 99988877665
No 4
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.6e-53 Score=476.14 Aligned_cols=473 Identities=47% Similarity=0.764 Sum_probs=395.1
Q ss_pred CCCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeeeeeecCCCCCCCcceEeeccceEEcCCCCcHHHHHHHH
Q 004944 45 SNKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQ 124 (722)
Q Consensus 45 ~~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~T~~~~g~~gn~~~~~~D~Ga~~~~~~~~~~l~~L~~e 124 (722)
.++++|||||||+|||+||++|.+.|++|+||||++|+|||++|.+..++ ..+|+|++|+++.+.|++..+.++
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~~~~~~------~~vd~Gas~~~g~~~npl~~l~~q 86 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYTFKSEGG------DHVDLGASVLTGVYNNPLALLSKQ 86 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEEEecCCC------CeeecCCceecCcCccHHHHHHHH
Confidence 34589999999999999999999999999999999999999999999876 269999999999999999999999
Q ss_pred hCCCeeeecCCcceEecCCcccChhhhHHHHHHHHHHHHHHHHHHHHhhcccc---CCCHHHHHHHHHHHhccCCCH---
Q 004944 125 LGSLLHKVRDKCPLYRLDGNSVDPEIDMKVEADFNRLLDKASRLRQLMGEVAM---DVSLGSALETFWRVYWDSGNA--- 198 (722)
Q Consensus 125 LGl~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~---~~s~~~~l~~~~~~~~~~~~~--- 198 (722)
||++...+...++++...+.......+......++.++.....+...+..... ..++.+.++.+..........
T Consensus 87 lgl~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (501)
T KOG0029|consen 87 LGLELYKVRDTCPLFNENGGESDKVFDDFVEQEFNRLLDDASNLEQRLDNEIIGISDDSFGEALEAFLSASRLMKTLLEL 166 (501)
T ss_pred hCcccceecccccccccCCcccccccccchhhhhHHHHHHHhhhhhhhhhcccccccccHHHHHHhHHHHHHHHHhhHHH
Confidence 99999999999999988886666666666666777777777766665554433 345555554433322211111
Q ss_pred ----HHHHHHHHHHHhhhhccchhhHHHHHHhhccCCCCCCCCCeeeeCCChHHHHHHHHHcCCcccCceEEEEEecCCc
Q 004944 199 ----EAMNLFNWHLANLEYANASLLSKLSLAFWDQDDPYDMGGDHCFLPGGNGRLVQALVENVPILYEKTVHTIRYGSDG 274 (722)
Q Consensus 199 ----~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~~~~~~gG~~~L~~aLa~~l~I~ln~~V~~I~~~~~~ 274 (722)
+....+.|++..+++........++...|.+...+...+.+....+|+..++..|+++++|++++.|.+|.+.+++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~G~~~v~~~la~~l~I~~~~~v~~i~~~~~~ 246 (501)
T KOG0029|consen 167 LLEGEADKVLQWHLVNLELTFIAHLENASARLWDQDELFGGGGIHLLMKGGYEPVVNSLAEGLDIHLNKRVRKIKYGDDG 246 (501)
T ss_pred hhhhhhhHHHHHHHHHHHHHhhccHhHhhHHhhhhhhhcccccchhHhhCCccHHHhhcCCCcceeeceeeEEEEEecCC
Confidence 3345778999999999888888888889988877766667889999999999999999999999999999998877
Q ss_pred -EEEEE-CCEEEEeCEEEEcCChhhhhcCCcccCCCCCHHHHHHHHhcCCCceeEEEEEcCCCcccCCCCCceeeecCCC
Q 004944 275 -VQVLA-GSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDTFGHLTDDSS 352 (722)
Q Consensus 275 -v~V~~-~G~~~~AD~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ai~~l~~~~~~kV~l~f~~~~w~~~~~~~g~l~~~~~ 352 (722)
+.+++ ++..+.+|+||+|+|+++++...|.|.|+||..+.++|++++.+.+.||.|.|++.||+.+.+.||.+.+...
T Consensus 247 ~~~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~Lp~~k~~aI~~lg~g~~~Kv~l~F~~~fW~~~~d~fg~~~~~~~ 326 (501)
T KOG0029|consen 247 AVKVTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPLPRWKQEAIDRLGFGLVNKVILEFPRVFWDQDIDFFGIVPETSV 326 (501)
T ss_pred ceEEEEECCCeeEeeEEEEEccHHHhccCceeeCCCCcHHHHHHHHhcCCCceeEEEEEeccccCCCCcCeEEEcccccc
Confidence 34444 5555999999999999999987899999999999999999999999999999999999988889999988777
Q ss_pred CCcceEEEeeccccCCCcEEEEEecchhhhhhcCCCHHHHHHHHHHHHHhhcCCCCCCCCCCceEEEecCCCCCCCCccc
Q 004944 353 SRGEFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSY 432 (722)
Q Consensus 353 ~~~~~~~~~~~~~p~g~~vl~~~v~g~~a~~~~~ls~eel~~~vl~~L~~i~~~~~~~v~~p~~~~~~rW~~~p~~~G~y 432 (722)
.++.+ .||+.....+.+++++++.++.++.+..++++++++.++..|+++|+ ...+++|+++.+++|..+++..|+|
T Consensus 327 ~~~~~-~f~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~l~k~f~--~~~~~~p~~~~vt~w~~d~~~~gsy 403 (501)
T KOG0029|consen 327 LRGLF-TFYDCKPVAGHPVLMSVVVGEAAERVETLSDSEIVKKAMKLLRKVFG--SEEVPDPLDALVTRWGTDPLSGGSY 403 (501)
T ss_pred ccchh-hhhhcCccCCCCeEEEEehhhhhHHHhcCCHHHHHHHHHHHHHHHhc--cCcCCCccceeeeeecccccCCccc
Confidence 66655 67787777788899999999999999999999999999999999998 4568999999999999999999999
Q ss_pred CCCCCCCCCccHHHHhcccCCCcEEEcccccccccCccchHHHHHHHHHHHHHHHHHhh---hhhhhhhccCCCCCCCcc
Q 004944 433 SNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGLRETAKMAHCANA---RALRMKVKVGKIPSKNAY 509 (722)
Q Consensus 433 ~~~~pG~~~~~~~~l~~pv~~~~L~fAGd~ts~~~~g~~eGAi~SG~~AA~~Il~~l~~---~~~~~~i~~~~~~~~~~~ 509 (722)
++..+|.....++.+.+|+. +++||||++|+..|+++|+||+.||.+||..|++.+.. .........+........
T Consensus 404 s~~~~~~~~~~y~~l~~pi~-~~~ffage~t~~~~~~tm~GA~~sG~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (501)
T KOG0029|consen 404 SYVAVGSDGDDYDRLAEPIK-NRVFFAGEATSRKYPGTMHGAYLSGLRAASDILDSLIEILRAGALRRLEPEVTDELSIE 482 (501)
T ss_pred cccCCCCChhHHHHHhcccc-CcEEecchhhcccCCCchHHHHHhhHHHHHHHHHHHHhhhhcccccccccccchhcccc
Confidence 99999998888999999983 45999999999999999999999999999999999873 222221112333333343
Q ss_pred ccchhhhccCCCCCCCcCce
Q 004944 510 SCASALTDLFREPDLEFGSF 529 (722)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~ 529 (722)
.. .+...++.|++..|.+
T Consensus 483 ~~--~~~~~~~~~~~~~~~~ 500 (501)
T KOG0029|consen 483 LD--VLEQEARNPELISGLP 500 (501)
T ss_pred cc--hhhhhccccccccCCC
Confidence 33 6777889999988764
No 5
>PLN02976 amine oxidase
Probab=100.00 E-value=4.3e-51 Score=480.90 Aligned_cols=439 Identities=44% Similarity=0.777 Sum_probs=356.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeeeeeecCCCCCCCcceEeeccceEEcCCCC--------cH
Q 004944 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLG--------NP 117 (722)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~T~~~~g~~gn~~~~~~D~Ga~~~~~~~~--------~~ 117 (722)
..++|+|||||++||+||++|.+.|++|+|||+++++||++++.+...+ +.+|+|++|+++... ++
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t~~~~~g------~pvDlGas~i~G~~~nv~~~r~~np 765 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTDRSSLS------VPVDLGASIITGVEADVATERRPDP 765 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceeeccccCC------ceeccCcEEEecccccccccccccH
Confidence 3478999999999999999999999999999999999999999875322 489999999987533 66
Q ss_pred HHHHHHHhCCCeeeecCCcceEe-cCCcccChhhhHHHHHHHHHHHHHHHHHHHHhhccccCCCHHHHHHHHHHHh----
Q 004944 118 LGILAKQLGSLLHKVRDKCPLYR-LDGNSVDPEIDMKVEADFNRLLDKASRLRQLMGEVAMDVSLGSALETFWRVY---- 192 (722)
Q Consensus 118 l~~L~~eLGl~~~~~~~~~~~~~-~~G~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~---- 192 (722)
+..+++++|+.........+.|. .+|..++...+..+...|..+++..............+.+++++++....+.
T Consensus 766 ~~~la~qlGl~l~~~~~~~~~yd~~~G~~V~~e~~~~v~~~fn~lld~~~~~~~~~g~~a~d~SLgd~Le~~~~~~~~~~ 845 (1713)
T PLN02976 766 SSLICAQLGLELTVLNSDCPLYDVVTGEKVPADLDEALEAEYNSLLDDMVLLVAQKGEHAMKMSLEDGLEYALKRRRMPR 845 (1713)
T ss_pred HHHHHHhcCCccccccCCCceeEccCCcCCCHHHHHHHHHHHHHHHHHHHHHHhhcccCccCCCHHHHHHHHHhhhhccc
Confidence 77789999999877665555444 6788888887777777777777655433222222344677777776311110
Q ss_pred -----------------------------------ccCCCHHHHHHHHHHHHhhhhccchhhHHHHHHhhccCCCCC-CC
Q 004944 193 -----------------------------------WDSGNAEAMNLFNWHLANLEYANASLLSKLSLAFWDQDDPYD-MG 236 (722)
Q Consensus 193 -----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~ 236 (722)
...+++..+.++.|++...++..+..+..+++.+|.....+. .+
T Consensus 846 ~~~~~~~~~~~~~~~~l~~~~~~~v~G~~~er~s~~~~Ls~~er~lL~w~~~~lE~~~aa~L~eVSl~~~~qd~~y~~fg 925 (1713)
T PLN02976 846 PGVDIDETELGNAADDLYDSASTGVDGGHCEKESKEDVLSPLERRVMNWHFAHLEYGCAALLKEVSLPYWNQDDVYGGFG 925 (1713)
T ss_pred cccccchhhcccchhhhhhhhhhcccccchhhhhHHHhhCHHHHHHHHHHHHhhcccccCCHHHhhhhhhhcccccccCC
Confidence 001223344556777777666666677778887777544332 45
Q ss_pred CCeeeeCCChHHHHHHHHHcCCcccCceEEEEEec----------CCcEEEEE-CCEEEEeCEEEEcCChhhhhcCCccc
Q 004944 237 GDHCFLPGGNGRLVQALVENVPILYEKTVHTIRYG----------SDGVQVLA-GSQVFEGDMVLCTVPLGVLKSGSIKF 305 (722)
Q Consensus 237 g~~~~~~gG~~~L~~aLa~~l~I~ln~~V~~I~~~----------~~~v~V~~-~G~~~~AD~VI~AvP~~~l~~~~i~~ 305 (722)
|..+.++||+++|+++|++++.|++|++|++|.+. +++|.|++ +|++++||+||+|+|+.+|+...|.|
T Consensus 926 G~~~rIkGGYqqLIeALAe~L~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetftADaVIVTVPLGVLKag~I~F 1005 (1713)
T PLN02976 926 GAHCMIKGGYSNVVESLAEGLDIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEFLGDAVLITVPLGCLKAETIKF 1005 (1713)
T ss_pred CceEEeCCCHHHHHHHHHhhCCeecCCeEEEEEecCCcccccccCCCcEEEEECCCCEEEeceEEEeCCHHHhhhccccc
Confidence 67888999999999999999999999999999984 35788888 88899999999999999998656899
Q ss_pred CCCCCHHHHHHHHhcCCCceeEEEEEcCCCcccCCCCCceeeecCCCCCcceEEEeeccccCCCcEEEEEecchhhhhhc
Q 004944 306 IPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDTFGHLTDDSSSRGEFFLFYSYATVAGGPLLIALVAGEAAHKFE 385 (722)
Q Consensus 306 ~p~Lp~~~~~ai~~l~~~~~~kV~l~f~~~~w~~~~~~~g~l~~~~~~~~~~~~~~~~~~p~g~~vl~~~v~g~~a~~~~ 385 (722)
.|+||+.+.++|++++|+.+.||++.|+++||+.+...||.........+.++.+|+...+.+.++|++|+.|..+..+.
T Consensus 1006 sPPLPe~KqaAIqrLgfG~lnKV~LeFdrpFW~~d~d~FG~s~edtdlrG~~~~~wnlr~psG~pVLVafv~G~aAreiE 1085 (1713)
T PLN02976 1006 SPPLPDWKYSSIQRLGFGVLNKVVLEFPEVFWDDSVDYFGATAEETDLRGQCFMFWNVKKTVGAPVLIALVVGKAAIDGQ 1085 (1713)
T ss_pred CCcccHHHHHHHHhhccccceEEEEEeCCccccCCCCccccccccCCCCceEEEeccCCCCCCCCEEEEEeccHhHHHHh
Confidence 99999999999999999999999999999999987777876655444455556677666667778999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCCCCCCCCceEEEecCCCCCCCCcccCCCCCCCCCccHHHHhcccCCCcEEEccccccc
Q 004944 386 SMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIR 465 (722)
Q Consensus 386 ~ls~eel~~~vl~~L~~i~~~~~~~v~~p~~~~~~rW~~~p~~~G~y~~~~pG~~~~~~~~l~~pv~~~~L~fAGd~ts~ 465 (722)
.++++++++.+++.|.++||.. .++.|..+.+++|..+||+.|+|++++||.....+..+.+|+. ++|||||++|+.
T Consensus 1086 sLSDEE~Ve~ALe~LrKlFG~~--~iPdPv~~vvTrWssDPySrGSYSy~~PGs~~~d~d~LAePVg-gRLFFAGEATS~ 1162 (1713)
T PLN02976 1086 SMSSSDHVNHALMVLRKLFGEA--LVPDPVASVVTDWGRDPFSYGAYSYVAIGASGEDYDILGRPVE-NCLFFAGEATCK 1162 (1713)
T ss_pred hCCHHHHHHHHHHHHHHHcCcc--cccCcceeEEecCCCCCCcCccccCCCCCCCchHHHHHhCCCC-CcEEEEehhhhC
Confidence 9999999999999999999842 3578999999999999999999999999998778889999983 569999999999
Q ss_pred ccCccchHHHHHHHHHHHHHHHHHhhhh
Q 004944 466 RYPATMHGAFLSGLRETAKMAHCANARA 493 (722)
Q Consensus 466 ~~~g~~eGAi~SG~~AA~~Il~~l~~~~ 493 (722)
.|+||||||+.||.|||++|+..+....
T Consensus 1163 ~~pGTVHGAIeSG~RAA~eIL~~L~~G~ 1190 (1713)
T PLN02976 1163 EHPDTVGGAMMSGLREAVRIIDILNTGN 1190 (1713)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHccC
Confidence 9999999999999999999999986543
No 6
>PLN02268 probable polyamine oxidase
Probab=100.00 E-value=3.8e-49 Score=442.58 Aligned_cols=420 Identities=35% Similarity=0.539 Sum_probs=312.2
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeeeeeecCCCCCCCcceEeeccceEEcCC-CCcHHHHHHHHhC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGT-LGNPLGILAKQLG 126 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~T~~~~g~~gn~~~~~~D~Ga~~~~~~-~~~~l~~L~~eLG 126 (722)
++|||||||+|||+||+.|.++|++|+||||++|+|||++|.+..|. .+|+|++|+++. ..+++..|++++|
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~~~g~-------~~d~G~~~i~~~~~~~~~~~l~~~lg 73 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDYSFGF-------PVDMGASWLHGVCNENPLAPLIGRLG 73 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecCcCCc-------ccCCCCeeEeccCCCchHHHHHHHhC
Confidence 47999999999999999999999999999999999999999876554 899999999874 3578889999999
Q ss_pred CCeeeecCCcceEe-----------cCCcccChhhhHHHHHHHHHHHHHHHHHHHHhhccccCCCHHHHHHHHHHHhc-c
Q 004944 127 SLLHKVRDKCPLYR-----------LDGNSVDPEIDMKVEADFNRLLDKASRLRQLMGEVAMDVSLGSALETFWRVYW-D 194 (722)
Q Consensus 127 l~~~~~~~~~~~~~-----------~~G~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~-~ 194 (722)
++.........+.+ ..+..++......+...+..++....... ....++.|+.++++.+..... .
T Consensus 74 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~s~~~~~~~~~~~~~~~ 150 (435)
T PLN02268 74 LPLYRTSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGETFERILEETEKVR---DEHEEDMSLLQAISIVLERHPEL 150 (435)
T ss_pred CceEeccCCccccccccccccceecCCCCCCCHHHHHHHHHHHHHHHHHHHHHH---hccCCCcCHHHHHHHHhhhCccc
Confidence 98665432222111 11112222222222222222222222211 112467888888765543211 0
Q ss_pred CCCHHHHHHHHHHHHhhhhccchhhHHHHHHhhccCCCCCCCCCeeeeCCChHHHHHHHHHcCCcccCceEEEEEecCCc
Q 004944 195 SGNAEAMNLFNWHLANLEYANASLLSKLSLAFWDQDDPYDMGGDHCFLPGGNGRLVQALVENVPILYEKTVHTIRYGSDG 274 (722)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~~~~~~gG~~~L~~aLa~~l~I~ln~~V~~I~~~~~~ 274 (722)
........++.+++..+....+.....++...+..... ..|....+++|+++++++|+++++|++|++|++|...+++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~--~~g~~~~~~~G~~~l~~~l~~~~~i~~~~~V~~i~~~~~~ 228 (435)
T PLN02268 151 RLEGLAHEVLQWYLCRMEGWFAADADTISLKSWDQEEL--LEGGHGLMVRGYDPVINTLAKGLDIRLNHRVTKIVRRYNG 228 (435)
T ss_pred ccchHHHHHHHHHHHHHHHHhCCChHhCchhhcCCccc--cCCCceeecCCHHHHHHHHhccCceeCCCeeEEEEEcCCc
Confidence 11112333343333222222233334444444433221 1233567889999999999999999999999999999999
Q ss_pred EEEEE-CCEEEEeCEEEEcCChhhhhcCCcccCCCCCHHHHHHHHhcCCCceeEEEEEcCCCcccCCCCCceeeecCCCC
Q 004944 275 VQVLA-GSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDTFGHLTDDSSS 353 (722)
Q Consensus 275 v~V~~-~G~~~~AD~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ai~~l~~~~~~kV~l~f~~~~w~~~~~~~g~l~~~~~~ 353 (722)
|+|++ +|+++.||+||+|+|+.++++..+.|.|+||+.+.+++++++|++..||.+.|+++||.+. ..+|.+.+....
T Consensus 229 v~v~~~~g~~~~ad~VIva~P~~~l~~~~i~f~p~lp~~~~~ai~~~~~g~~~Kv~l~f~~~fw~~~-~~~g~~~~~~~~ 307 (435)
T PLN02268 229 VKVTVEDGTTFVADAAIIAVPLGVLKANIIKFEPELPEWKEEAISDLGVGIENKIALHFDSVFWPNV-EFLGVVAPTSYG 307 (435)
T ss_pred EEEEECCCcEEEcCEEEEecCHHHHhcCcceecCCCCHHHHHHHHhCCccceeEEEEEeCCCCCCCC-ceeeccCCCCCC
Confidence 99988 7888999999999999999865678999999999999999999999999999999999753 445555433211
Q ss_pred CcceEEEeeccccCCCcEEEEEecchhhhhhcCCCHHHHHHHHHHHHHhhcCCCCCCCCCCceEEEecCCCCCCCCcccC
Q 004944 354 RGEFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYS 433 (722)
Q Consensus 354 ~~~~~~~~~~~~p~g~~vl~~~v~g~~a~~~~~ls~eel~~~vl~~L~~i~~~~~~~v~~p~~~~~~rW~~~p~~~G~y~ 433 (722)
...+.+.....+.+++++|+.+..+..+..++++++++.++++|.++|+. .+.|+.+.+++|..+||+.|+|+
T Consensus 308 ---~~~~~~~~~~~g~~~l~~~~~g~~a~~~~~~~~~e~~~~v~~~L~~~~~~----~~~p~~~~~~~W~~dp~~~G~~~ 380 (435)
T PLN02268 308 ---CSYFLNLHKATGHPVLVYMPAGRLARDIEKLSDEAAANFAMSQLKKMLPD----ATEPVQYLVSRWGSDPNSLGCYS 380 (435)
T ss_pred ---ceEEEecccCCCCCEEEEEeccHHHHHHHhCCHHHHHHHHHHHHHHHcCC----CCCccEEEecccCCCCCCCccCC
Confidence 12233333345677889999999999999999999999999999999963 35788999999999999999999
Q ss_pred CCCCCCCCccHHHHhcccCCCcEEEcccccccccCccchHHHHHHHHHHHHHHHHH
Q 004944 434 NVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGLRETAKMAHCA 489 (722)
Q Consensus 434 ~~~pG~~~~~~~~l~~pv~~~~L~fAGd~ts~~~~g~~eGAi~SG~~AA~~Il~~l 489 (722)
++.||+....++.+++|+ ++||||||+|+..|+||||||+.||++||++|++.+
T Consensus 381 ~~~~g~~~~~~~~l~~p~--~~l~FAGe~ts~~~~g~~eGA~~sG~raA~~v~~~l 434 (435)
T PLN02268 381 YDLVGKPHDLYERLRAPV--DNLFFAGEATSSDFPGSVHGAYSTGVMAAEECRMRL 434 (435)
T ss_pred CCCCCCCHHHHHHHhCCC--CCeEEeeccCCCcccccHHHHHHHHHHHHHHHHHhh
Confidence 999998766788899998 899999999998889999999999999999999754
No 7
>PLN02568 polyamine oxidase
Probab=100.00 E-value=2.3e-47 Score=434.01 Aligned_cols=434 Identities=31% Similarity=0.431 Sum_probs=317.3
Q ss_pred CCcEEEECccHHHHHHHHHHHHCC-----CcEEEEecCCCcceeeeeeecCCCCCCCcceEeeccceEEcCCCCcHHHHH
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLG-----FRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGIL 121 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G-----~~V~VLEa~~r~GGr~~T~~~~g~~gn~~~~~~D~Ga~~~~~~~~~~l~~L 121 (722)
.+||||||||+|||+||++|++.| ++|+|||+++++|||++|.+..|+ .+|.|++|+++...+++..|
T Consensus 5 ~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~~~~g~-------~~d~G~~~~~g~~~~~~~~l 77 (539)
T PLN02568 5 KPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSEFGGE-------RIEMGATWIHGIGGSPVYKI 77 (539)
T ss_pred CCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEEEeCCe-------EEecCCceeCCCCCCHHHHH
Confidence 478999999999999999999988 899999999999999999998776 99999999998878999999
Q ss_pred HHHhCCCeeeec--------CCcceEecCCcccChhhhHHHHHHHHHHHHHHHHHH---------------HHhh---cc
Q 004944 122 AKQLGSLLHKVR--------DKCPLYRLDGNSVDPEIDMKVEADFNRLLDKASRLR---------------QLMG---EV 175 (722)
Q Consensus 122 ~~eLGl~~~~~~--------~~~~~~~~~G~~~~~~~~~~~~~~~~~ll~~~~~~~---------------~~~~---~~ 175 (722)
++++|+...... ....++..+|..++......+...+..+++...... .... ..
T Consensus 78 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 157 (539)
T PLN02568 78 AQEAGSLESDEPWECMDGFPDRPKTVAEGGFEVDPSIVESISTLFRGLMDDAQGKLIEPSEVDEVDFVKLAAKAARVCES 157 (539)
T ss_pred HHHhCCccccCcceecccccccceEEccCCcCCCHHHHHHHHHHHHHHHHHhhcccccccccccccccccchhccchhcc
Confidence 999998543211 123356677877776665556666666665443111 0000 01
Q ss_pred ccCCCHHHHHHH-HHHHhccCCCH------------HHH-HHHHHHHHhhhhccc--hhhHHHHHHhhccCCCCCCCCCe
Q 004944 176 AMDVSLGSALET-FWRVYWDSGNA------------EAM-NLFNWHLANLEYANA--SLLSKLSLAFWDQDDPYDMGGDH 239 (722)
Q Consensus 176 ~~~~s~~~~l~~-~~~~~~~~~~~------------~~~-~~~~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~~~g~~ 239 (722)
..+.++.++++. +.........+ ... ..+.+ +..++.... ..+..++...... .....|..
T Consensus 158 ~~~~Sl~~fl~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~~~ls~ls~~~~~~--~~~~~g~~ 234 (539)
T PLN02568 158 GGGGSVGSFLRRGLDAYWDSVSADEQIKGYGGWSRKLLEEAIFTM-HENTQRTYTSADDLSTLDLAAESE--YRMFPGEE 234 (539)
T ss_pred CCCCcHHHHHHHHHHHHHhhcccchhhccccchhHHHHHHHHHHH-HHHhhccccccccHhhccccccCc--ceecCCCe
Confidence 133477777764 22211111110 101 11211 222222222 1222222211111 11234567
Q ss_pred eeeCCChHHHHHHHHHcCC---cccCceEEEEEecCCcEEEEE-CCEEEEeCEEEEcCChhhhhcC----CcccCCCCCH
Q 004944 240 CFLPGGNGRLVQALVENVP---ILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVLKSG----SIKFIPELPQ 311 (722)
Q Consensus 240 ~~~~gG~~~L~~aLa~~l~---I~ln~~V~~I~~~~~~v~V~~-~G~~~~AD~VI~AvP~~~l~~~----~i~~~p~Lp~ 311 (722)
+.+++|+++|+++|++.++ |++|++|++|..++++|+|++ +|++++||+||+|+|+.+|+.. .+.|.|+||+
T Consensus 235 ~~i~gG~~~Li~~La~~L~~~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~i~F~P~LP~ 314 (539)
T PLN02568 235 ITIAKGYLSVIEALASVLPPGTIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVSLGVLKAGIGEDSGLFSPPLPD 314 (539)
T ss_pred EEECCcHHHHHHHHHhhCCCCEEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCCHHHHhhccccccceecCCCCH
Confidence 8899999999999999986 999999999999999999988 8889999999999999999853 2579999999
Q ss_pred HHHHHHHhcCCCceeEEEEEcCCCcccCC-----CCCceeeecCCCC--C--cceEEE---eeccc-cCCCcEEEEEecc
Q 004944 312 RKLDAIKRLGYGLLNKVAMLFPYVFWETD-----LDTFGHLTDDSSS--R--GEFFLF---YSYAT-VAGGPLLIALVAG 378 (722)
Q Consensus 312 ~~~~ai~~l~~~~~~kV~l~f~~~~w~~~-----~~~~g~l~~~~~~--~--~~~~~~---~~~~~-p~g~~vl~~~v~g 378 (722)
.+.+++++++++.+.||++.|+++||... ...+..+...... . ...+++ ++... ..+.++|++|+.|
T Consensus 315 ~k~~Ai~~l~~g~~~Ki~l~f~~~fW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~~~~~G 394 (539)
T PLN02568 315 FKTDAISRLGFGVVNKLFVELSPRPDGSPEDVAKFPFLQMAFHRSDSEARHDKIPWWMRRTASICPIHKNSSVLLSWFAG 394 (539)
T ss_pred HHHHHHHhcCCceeeEEEEEecCCCCCcccccccccceeeeecccchhhhcccccchhhccccccccCCCCCEEEEEecc
Confidence 99999999999999999999999998642 1122222221110 0 001111 01111 2366799999999
Q ss_pred hhhhhhcCCCHHHHHHHHHHHHHhhcCCCCC-------------------CCCCCceEEEecCCCCCCCCcccCCCCCCC
Q 004944 379 EAAHKFESMPPTDAVTKVLQILKGIYEPKGI-------------------NVPEPIQTVCTRWGGDPFSLGSYSNVAVGA 439 (722)
Q Consensus 379 ~~a~~~~~ls~eel~~~vl~~L~~i~~~~~~-------------------~v~~p~~~~~~rW~~~p~~~G~y~~~~pG~ 439 (722)
+.+..++.++++++++.+++.|+++|+.... ..+.|..+.+++|..+||+.|+|++++||.
T Consensus 395 ~~A~~~e~l~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~t~W~~dp~~~GsYs~~~~g~ 474 (539)
T PLN02568 395 KEALELEKLSDEEIIRGVQTTLSSFLKRRVAGLGSQSHPLCNGGASSNDGSRWKFVKVLKSKWGTDPLFLGSYSYVAVGS 474 (539)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHcCCcccCcccccccccccccccccccCCCCceEEeCCCCCCCccCCccCCCcCCC
Confidence 9999999999999999999999999974311 124688999999999999999999999999
Q ss_pred CCccHHHHhcccC-----------CCcEEEcccccccccCccchHHHHHHHHHHHHHHHHHh
Q 004944 440 SGDDYDIMAESVG-----------DGRLFFAGEATIRRYPATMHGAFLSGLRETAKMAHCAN 490 (722)
Q Consensus 440 ~~~~~~~l~~pv~-----------~~~L~fAGd~ts~~~~g~~eGAi~SG~~AA~~Il~~l~ 490 (722)
....++.|++|+. .++|||||++|+..|+++||||+.||+|||++|+..++
T Consensus 475 ~~~~~~~La~P~~~~~~~~~~~~~~~~l~FAGEat~~~~~~Tv~GA~~SG~RaA~~i~~~~~ 536 (539)
T PLN02568 475 SGDDLDRMAEPLPRISDHDQAGGPPLQLLFAGEATHRTHYSTTHGAYFSGLREANRLLQHYK 536 (539)
T ss_pred ChhHHHHHhCccccccccccccCCCccEEEeecccCCCccchHHHHHHHHHHHHHHHHHHhc
Confidence 8778889999984 13799999999999999999999999999999998763
No 8
>PLN02676 polyamine oxidase
Probab=100.00 E-value=1.8e-46 Score=423.71 Aligned_cols=425 Identities=28% Similarity=0.502 Sum_probs=303.3
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCC-cEEEEecCCCcceeeeeeecCCCCCCCcceEeeccceEEcC---CCCcHHHHHH
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGF-RVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTG---TLGNPLGILA 122 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~-~V~VLEa~~r~GGr~~T~~~~g~~gn~~~~~~D~Ga~~~~~---~~~~~l~~L~ 122 (722)
++||+|||||++||+||++|++.|+ +|+|||+++++|||+.+.+..|. .+|+|++|+++ ...+++..++
T Consensus 26 ~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~g~-------~~d~g~~~~~~~~~~~~~~~~~l~ 98 (487)
T PLN02676 26 SPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAGV-------SVELGANWVEGVGGPESNPIWELA 98 (487)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCCCe-------EEecCCEEEEcccCcccChHHHHH
Confidence 3899999999999999999999998 69999999999999999887665 99999999975 4568888999
Q ss_pred HHhCCCeeeecC---CcceEecCCcccChhhhHHHHHHHHHHHHHHHHHHHHh-hccccCCCHHHHHHHHHHHhccCCCH
Q 004944 123 KQLGSLLHKVRD---KCPLYRLDGNSVDPEIDMKVEADFNRLLDKASRLRQLM-GEVAMDVSLGSALETFWRVYWDSGNA 198 (722)
Q Consensus 123 ~eLGl~~~~~~~---~~~~~~~~G~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~~~~~~~s~~~~l~~~~~~~~~~~~~ 198 (722)
+++|+....... ...++..+|...+..........+..+......+.... ....++.++.+.. .+.... ....
T Consensus 99 ~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~~~~~~--~~~~ 175 (487)
T PLN02676 99 NKLKLRTFYSDFDNLSSNIYKQDGGLYPKKVVQKSMKVADASDEFGENLSISLSAKKAVDISILTAQ-RLFGQV--PKTP 175 (487)
T ss_pred HhcCCceeecCccccceeEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCccHHHHH-HHHhhC--CCCH
Confidence 999998764321 23455567776643211111112222211111111110 1112344432211 122111 0111
Q ss_pred HHHHHHHHHHHhhhhccchhhHHHHHHhhccCCCC-CCCCCeeee--CCChHHHHHHHHHcC-----------CcccCce
Q 004944 199 EAMNLFNWHLANLEYANASLLSKLSLAFWDQDDPY-DMGGDHCFL--PGGNGRLVQALVENV-----------PILYEKT 264 (722)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~~g~~~~~--~gG~~~L~~aLa~~l-----------~I~ln~~ 264 (722)
... ...+.... ...+.....+++..+.....+ ..++..+++ ++|+++|++.|++.+ +|++|++
T Consensus 176 ~~~-~~~~~~~~--~~~~~~~~~~S~~~~~~~~~~~~~g~~~~~~~~~~G~~~l~~~La~~~~~~~~~~~~~~~I~l~~~ 252 (487)
T PLN02676 176 LEM-VIDYYNYD--YEFAEPPRVTSLKNTEPNPTFVDFGEDEYFVADPRGYESLVYYLAEQFLSTKSGKITDPRLKLNKV 252 (487)
T ss_pred HHH-HHHHHhcc--ceeccCccccchhhcCcccccccCCCceEEeecCCCHHHHHHHHHhhcccccccccCCCceecCCE
Confidence 111 11111111 111222222333222211111 233444555 689999999999854 4999999
Q ss_pred EEEEEecCCcEEEEE-CCEEEEeCEEEEcCChhhhhcCCcccCCCCCHHHHHHHHhcCCCceeEEEEEcCCCcccCCCCC
Q 004944 265 VHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDT 343 (722)
Q Consensus 265 V~~I~~~~~~v~V~~-~G~~~~AD~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ai~~l~~~~~~kV~l~f~~~~w~~~~~~ 343 (722)
|++|..++++|+|++ +|++++||+||+|+|+.+|++..|.|.|+||+.+.+++++++++.+.||++.|+++||++....
T Consensus 253 V~~I~~~~~gV~V~~~~G~~~~a~~VIvtvPl~vLk~~~I~F~P~LP~~k~~ai~~l~~g~~~Kv~l~f~~~FW~~~~~~ 332 (487)
T PLN02676 253 VREISYSKNGVTVKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKPPLPDWKIEAIYQFDMAVYTKIFLKFPYKFWPSGPGT 332 (487)
T ss_pred eeEEEEcCCcEEEEECCCCEEEeCEEEEccChHHhccCceEEeCCCCHHHHHHHHhCCceeeEEEEEEeCCCCCCCCCCc
Confidence 999999999999998 7889999999999999999865699999999999999999999999999999999999863222
Q ss_pred ceeeecCCCCCcceEEEeec-cccCCCcEEEEEecchhhhhhcCCCHHHHHHHHHHHHHhhcCCCCCCCCCCceEEEecC
Q 004944 344 FGHLTDDSSSRGEFFLFYSY-ATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRW 422 (722)
Q Consensus 344 ~g~l~~~~~~~~~~~~~~~~-~~p~g~~vl~~~v~g~~a~~~~~ls~eel~~~vl~~L~~i~~~~~~~v~~p~~~~~~rW 422 (722)
........ ..+....++.. ..+++.+++.+++.++.+..+..+++++.++.++++|+++||+ .++.|..+..++|
T Consensus 333 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~g~~a~~~~~~s~e~~~~~vl~~L~~~~g~---~~~~p~~~~~~~W 408 (487)
T PLN02676 333 EFFLYAHE-RRGYYPFWQHLENEYPGSNVLFVTVTDEESRRIEQQPDSETKAEIMEVLRKMFGP---NIPEATDILVPRW 408 (487)
T ss_pred eeeeeecc-ccccchhhhhcccCCCCCCEEEEEechHHHHHHHhCCHHHHHHHHHHHHHHHhCC---CCCCcceEEeccc
Confidence 22222111 11111111111 1234556888889888899999999999999999999999974 3678899999999
Q ss_pred CCCCCCCcccCCCCCCCCCccHHHHhcccCCCcEEEcccccccccCccchHHHHHHHHHHHHHHHHHh
Q 004944 423 GGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGLRETAKMAHCAN 490 (722)
Q Consensus 423 ~~~p~~~G~y~~~~pG~~~~~~~~l~~pv~~~~L~fAGd~ts~~~~g~~eGAi~SG~~AA~~Il~~l~ 490 (722)
..+||+.|+|++++||......+.+++|+ ++|||||++|+..|+||||||+.||++||++|++.+.
T Consensus 409 ~~dp~s~Gsys~~~pG~~~~~~~~L~~P~--gri~FAGe~ts~~~~g~~eGA~~SG~RaA~~I~~~l~ 474 (487)
T PLN02676 409 WSNRFFKGSYSNWPIGVSRYEFDQIRAPV--GRVYFTGEHTSEKYNGYVHGAYLAGIDTANDLLECIK 474 (487)
T ss_pred CCCCCCCcccCCCCCCCChhHHHHHhCCC--CceEEeccccccccccchHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999998877788999998 8999999999988999999999999999999999874
No 9
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=100.00 E-value=1.8e-46 Score=398.64 Aligned_cols=432 Identities=31% Similarity=0.487 Sum_probs=319.2
Q ss_pred CCCCcEEEECccHHHHHHHHHHHHCCC-cEEEEecCCCcceeeeeeecCCCCCCCcceEeeccceEEcCCCCcHHHHHHH
Q 004944 45 SNKLRVLVIGAGLAGLAAARQLMRLGF-RVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAK 123 (722)
Q Consensus 45 ~~~~dVvIVGAGiAGLsAA~~Lak~G~-~V~VLEa~~r~GGr~~T~~~~g~~gn~~~~~~D~Ga~~~~~~~~~~l~~L~~ 123 (722)
....+|||||||+|||+||.+|.+.|+ +|+|||+++|+|||++|..+.++ .+|+||+|++|..+|+++.+++
T Consensus 19 ~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti~~~d~-------~ielGAqwihG~~gNpVY~la~ 91 (498)
T KOG0685|consen 19 RGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTIPFADG-------VIELGAQWIHGEEGNPVYELAK 91 (498)
T ss_pred cCCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEeeEEcCCC-------eEeecceeecCCCCChHHHHHH
Confidence 345789999999999999999998875 79999999999999999999887 9999999999999999999999
Q ss_pred HhC-CCeeeec----CCcceEecCCcccChhhhHHHHHHHHHHHHHHHHHHHHhhccccCCCHHHHHH-HHHHHhccCCC
Q 004944 124 QLG-SLLHKVR----DKCPLYRLDGNSVDPEIDMKVEADFNRLLDKASRLRQLMGEVAMDVSLGSALE-TFWRVYWDSGN 197 (722)
Q Consensus 124 eLG-l~~~~~~----~~~~~~~~~G~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~s~~~~l~-~~~~~~~~~~~ 197 (722)
++| +...... .....+..+|..++..........+..+... .+.. .-.....|+++++. .++......-.
T Consensus 92 ~~g~~~~~~~tg~~~~~~~~~~~~g~~V~~~~~~~~~~~~~~~~~~---~r~~-~~~~~~~SvG~~ln~~~~~~~~~~e~ 167 (498)
T KOG0685|consen 92 EYGDLKLLEVTGPAYVDNFHTRSNGEVVPEELLDELNEITVTLSDK---LREA-EIAHDEGSVGEYLNSEFWDELRGPEN 167 (498)
T ss_pred HhCccceeccCCccccceeEEEecCccCcHHHHHHHHHHHHhhhhh---cccc-cccCccccHHHHHHHHHHHHhccccc
Confidence 998 3222111 1223355677777665443333322222111 1110 01145667777775 34433321111
Q ss_pred HH-H----HHHHHHHHHh-hhhccchhhHHHHHHhhccCCCCCCCC--CeeeeCCChHHHHHHHHHcCC-----------
Q 004944 198 AE-A----MNLFNWHLAN-LEYANASLLSKLSLAFWDQDDPYDMGG--DHCFLPGGNGRLVQALVENVP----------- 258 (722)
Q Consensus 198 ~~-~----~~~~~~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~~g--~~~~~~gG~~~L~~aLa~~l~----------- 258 (722)
+. . .+++..+... .....++.++.++..-+... ....| .....+.|+..+.+.|++.++
T Consensus 168 ~~~~k~l~~~~~~~~~k~e~~~~~~d~l~evs~~~~~ey--~~~~ge~~~~~~~kGy~~iL~~l~~~~p~~~i~~~~~~~ 245 (498)
T KOG0685|consen 168 PEIDKTLAEEILNVYFKVECSITGADNLSEVSLRALLEY--TECPGEELLIWNKKGYKRILKLLMAVIPAQNIELGLWKR 245 (498)
T ss_pred cchhhHHHHHHHHHHHHHheeeeccCchhhhhhhhccce--eecCchhhheechhHHHHHHHHHhccCCCcchhcCchhh
Confidence 11 1 1222222111 11223344555555433221 12233 456778899999999988552
Q ss_pred cccCceEEEEEecC-CcEEEEE-CCEEEEeCEEEEcCChhhhhcC-CcccCCCCCHHHHHHHHhcCCCceeEEEEEcCCC
Q 004944 259 ILYEKTVHTIRYGS-DGVQVLA-GSQVFEGDMVLCTVPLGVLKSG-SIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYV 335 (722)
Q Consensus 259 I~ln~~V~~I~~~~-~~v~V~~-~G~~~~AD~VI~AvP~~~l~~~-~i~~~p~Lp~~~~~ai~~l~~~~~~kV~l~f~~~ 335 (722)
++++++|..|...+ +.|.|+. ||+.+.||+||||+++++|+.. .-.|.|+||..+.++|+++.+++.+|+++-|.+|
T Consensus 246 ~~~~~rv~~I~~~~~~~v~l~c~dg~v~~adhVIvTvsLGvLk~~h~~lF~P~LP~~K~~AIe~lgfGtv~KiFLE~E~p 325 (498)
T KOG0685|consen 246 IHLNTRVENINWKNTGEVKLRCSDGEVFHADHVIVTVSLGVLKEQHHKLFVPPLPAEKQRAIERLGFGTVNKIFLEFEEP 325 (498)
T ss_pred hcccccceeeccCCCCcEEEEEeCCcEEeccEEEEEeechhhhhhhhhhcCCCCCHHHHHHHHhccCCccceEEEEccCC
Confidence 56669999999885 5588888 9999999999999999999863 2348999999999999999999999999999999
Q ss_pred cccCCCCCceeeecCCC---CCc-------ceEEEeeccccCCCcEEEEEecchhhhhhcCCCHHHHHHHHHHHHHhhcC
Q 004944 336 FWETDLDTFGHLTDDSS---SRG-------EFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYE 405 (722)
Q Consensus 336 ~w~~~~~~~g~l~~~~~---~~~-------~~~~~~~~~~p~g~~vl~~~v~g~~a~~~~~ls~eel~~~vl~~L~~i~~ 405 (722)
||+.+...+..++.+.. .+. .++.|...+..+ .+|.+++.|..+..++++++|++.+.+...|+++++
T Consensus 326 fwp~~~~~i~~lw~~e~l~e~r~~~~~w~~~~~~f~~v~~~~--~vL~gWiaG~~~~~me~lsdEev~e~~~~~lr~fl~ 403 (498)
T KOG0685|consen 326 FWPSDWNGIQLLWLDEDLEELRSTLDAWEEDIMGFQPVSWAP--NVLLGWIAGREARHMETLSDEEVLEGLTKLLRKFLK 403 (498)
T ss_pred CCCCCCceeEEEEecCcHHHHhhhhHHHHhhceEEEEcCcch--hhhheeccCCcceehhhCCHHHHHHHHHHHHHHhcC
Confidence 99988887877776544 111 223344333222 699999999999999999999999999999999998
Q ss_pred CCCCCCCCCceEEEecCCCCCCCCcccCCCCCCCCCccHHHHhccc------CCCcEEEcccccccccCccchHHHHHHH
Q 004944 406 PKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESV------GDGRLFFAGEATIRRYPATMHGAFLSGL 479 (722)
Q Consensus 406 ~~~~~v~~p~~~~~~rW~~~p~~~G~y~~~~pG~~~~~~~~l~~pv------~~~~L~fAGd~ts~~~~g~~eGAi~SG~ 479 (722)
. ..+|.|..+.++.|..+||++|+|++..+|+....-..+..|. +.+.|.|||++|+..+..+++||++||+
T Consensus 404 n--~~iP~p~kilRs~W~snp~frGSYSY~svgs~~~d~~~~a~p~p~~~~~~~p~I~FAGEaThr~~YsTthGA~~SG~ 481 (498)
T KOG0685|consen 404 N--PEIPKPKKILRSQWISNPFFRGSYSYRSVGSDGSDTGALALPLPLTLVTGRPQILFAGEATHRTFYSTTHGAVLSGW 481 (498)
T ss_pred C--CCCCCchhhhhhcccCCCccCceeeEeeccccccccchhhccCCccccCCCceEEEccccccccceehhhhhHHhhH
Confidence 4 4689999999999999999999999999998765555555443 3468999999999989999999999999
Q ss_pred HHHHHHHHHHhhhh
Q 004944 480 RETAKMAHCANARA 493 (722)
Q Consensus 480 ~AA~~Il~~l~~~~ 493 (722)
|+|++++..+....
T Consensus 482 REA~RL~~~y~~~~ 495 (498)
T KOG0685|consen 482 READRLLEHYESST 495 (498)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999775543
No 10
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=100.00 E-value=6.8e-43 Score=372.53 Aligned_cols=421 Identities=27% Similarity=0.382 Sum_probs=284.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeeeeeecCCCCCCCcceEeeccceEEcCCCCcHHHHHHHHh
Q 004944 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQL 125 (722)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~T~~~~g~~gn~~~~~~D~Ga~~~~~~~~~~l~~L~~eL 125 (722)
+..||||||||+|||+||++|.++|++|+|||+++|+|||+.|.+..+ ...|+|++++... .+.+..+++++
T Consensus 6 ~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~~~-------~~~d~gG~~i~p~-~~~~l~~~k~~ 77 (450)
T COG1231 6 KTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARAGG-------EYTDLGGQYINPT-HDALLAYAKEF 77 (450)
T ss_pred CCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEeccc-------eeeccCCcccCcc-chhhhhhHHhc
Confidence 458999999999999999999999999999999999999999999844 3999999999774 46677799999
Q ss_pred CCCeeeecCC-cceEecCCcccChhhhH-----HHHHHHHHHHHHHHHHHHHhhccccCCCHHHHHHHHHHHhccCCCHH
Q 004944 126 GSLLHKVRDK-CPLYRLDGNSVDPEIDM-----KVEADFNRLLDKASRLRQLMGEVAMDVSLGSALETFWRVYWDSGNAE 199 (722)
Q Consensus 126 Gl~~~~~~~~-~~~~~~~G~~~~~~~~~-----~~~~~~~~ll~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~ 199 (722)
|++..++... .....+.+..-..+... .+......+... ......+........-+...+.+..|. ...
T Consensus 78 gv~~~~fi~~g~~~~~~~~~~~~~p~~~~~~~~d~~~~~~~~~~~-a~~~~~~~~~~t~~~~e~~~~~~~~W~----~~~ 152 (450)
T COG1231 78 GVPLEPFIRDGDNVIGYVGSSKSTPKRSLTAAADVRGLVAELEAK-ARSAGELDPGLTPEDRELDLESLAAWK----TSS 152 (450)
T ss_pred CCCCCceeccCcccccccccccccchhccchhhhhcchhhhhhhh-hhcccccCcccCcchhhhhhHHHHhhh----hcc
Confidence 9998765431 11111111111110000 000000000000 000000000000000011111222220 000
Q ss_pred HHHHHHHH-HHhhhhcc-----ch-hhHHHHHHhhc---cCCCCCCCCCeeeeCCChHHHHHHHHHcCC--cccCceEEE
Q 004944 200 AMNLFNWH-LANLEYAN-----AS-LLSKLSLAFWD---QDDPYDMGGDHCFLPGGNGRLVQALVENVP--ILYEKTVHT 267 (722)
Q Consensus 200 ~~~~~~~~-~~~~~~~~-----~~-~l~~l~~~~~~---~~~~~~~~g~~~~~~gG~~~L~~aLa~~l~--I~ln~~V~~ 267 (722)
...+..+ ........ -. +...+....+. ....++.....+...|||+.|.+++++.+. |+++++|.+
T Consensus 153 -~~~~~~~~~a~~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~~~~GGmd~la~Afa~ql~~~I~~~~~V~r 231 (450)
T COG1231 153 -LRGLSRDPGARVSPGPIEPGDVSLLHDALPLRSASVVDRGIGGEIRTQMLQRLGGMDQLAEAFAKQLGTRILLNEPVRR 231 (450)
T ss_pred -ccccccCccceeccCCCCcccccchhhhhhhhhhhhccccccccccchhhccCccHHHHHHHHHHHhhceEEecCceee
Confidence 0000000 00000000 00 00111111111 111222223345555999999999999874 999999999
Q ss_pred EEecCCcEEEEECC-EEEEeCEEEEcCChhhhhcCCcccCCCCCHHHHHHHHhcCCCceeEEEEEcCCCcccCCCCCcee
Q 004944 268 IRYGSDGVQVLAGS-QVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDTFGH 346 (722)
Q Consensus 268 I~~~~~~v~V~~~G-~~~~AD~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ai~~l~~~~~~kV~l~f~~~~w~~~~~~~g~ 346 (722)
|...+++|+|+++. +++.+|+||||+|+.++. .|.|.|.+|++++++++.++|++.+|+.+.|+++||++.....|.
T Consensus 232 I~q~~~gV~Vt~~~~~~~~ad~~i~tiPl~~l~--qI~f~P~l~~~~~~a~~~~~y~~~~K~~v~f~rpFWee~~~l~G~ 309 (450)
T COG1231 232 IDQDGDGVTVTADDVGQYVADYVLVTIPLAILG--QIDFAPLLPAEYKQAAKGVPYGSATKIGVAFSRPFWEEAGILGGE 309 (450)
T ss_pred EEEcCCeEEEEeCCcceEEecEEEEecCHHHHh--hcccCCCCCHHHHHHhcCcCcchheeeeeecCchhhhhcccCCce
Confidence 99999999999955 899999999999999998 599999999999999999999999999999999999987622232
Q ss_pred eecCCCCCcceEEEeecccc-CCCcEEEE-EecchhhhhhcCCCHHHHHHHHHHHHHhhcCCCCCCCCCCceE-EEecCC
Q 004944 347 LTDDSSSRGEFFLFYSYATV-AGGPLLIA-LVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQT-VCTRWG 423 (722)
Q Consensus 347 l~~~~~~~~~~~~~~~~~~p-~g~~vl~~-~v~g~~a~~~~~ls~eel~~~vl~~L~~i~~~~~~~v~~p~~~-~~~rW~ 423 (722)
...+.. ..+..++.... .|..++.. |..++.+..|..+++++.++.++..+.++||+. ..++.+. ...+|.
T Consensus 310 ~~tD~~---~~~i~~~s~~~~~G~gVl~g~~~~g~~A~~~~~~~~~~r~~~vl~~l~~~~g~~---a~~~f~~~~~~~W~ 383 (450)
T COG1231 310 SLTDLG---LGFISYPSAPFADGPGVLLGSYAFGDDALVIDALPEAERRQKVLARLAKLFGDE---AADPFDYGASVDWS 383 (450)
T ss_pred EeecCC---cceEecCccccCCCceEEEeeeeccccceeEecCCHHHHHHHHHHhHhhhCChh---hccccccceeeecc
Confidence 222221 12233333322 44455555 677999999999999999999999999999853 3455555 889999
Q ss_pred CCCCCCcccCCCCCCCCCccHHHHhcccCCCcEEEcccccccccCccchHHHHHHHHHHHHHHHHHh
Q 004944 424 GDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGLRETAKMAHCAN 490 (722)
Q Consensus 424 ~~p~~~G~y~~~~pG~~~~~~~~l~~pv~~~~L~fAGd~ts~~~~g~~eGAi~SG~~AA~~Il~~l~ 490 (722)
.+||+.|+|..+.||+....++.+..|. +||||||+..++.++||||||++||.+||.+|...+.
T Consensus 384 ~dpwt~G~~aa~~~g~~~~~~~~l~~p~--gRIh~AgtEhas~~~Gw~eGAi~Sg~~AA~ei~~~l~ 448 (450)
T COG1231 384 KDPWTLGGTAAYPPGQRTKLYPTLPAPH--GRIHFAGTEHASEFGGWLEGAIRSGQRAAAEIHALLS 448 (450)
T ss_pred cCCcCCccccccCCcccccccccccCCC--CceEEeeecccccccchhHHHHHHHHHHHHHHHHhhc
Confidence 9999999888999999999999999987 9999999555555899999999999999999998764
No 11
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=100.00 E-value=1.3e-37 Score=351.87 Aligned_cols=409 Identities=19% Similarity=0.236 Sum_probs=279.0
Q ss_pred CCcEEEECccHHHHHHHHHHHHC----CCcEEEEecCCCcceeeeeeecCCCCCCCcceEeeccceEEcCCCCcHHHHHH
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRL----GFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILA 122 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~----G~~V~VLEa~~r~GGr~~T~~~~g~~gn~~~~~~D~Ga~~~~~~~~~~l~~L~ 122 (722)
++||+|||||+|||+||++|+++ |++|+|||+++++|||++|.+.+|+ .+|.|+|++...+.+ +..++
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~g~-------~~e~G~~~~~~~~~~-~~~l~ 73 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGY-------LIERGPDSFLERKKS-APDLV 73 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeCCE-------EEecCccccccCChH-HHHHH
Confidence 37999999999999999999999 9999999999999999999987765 999999999987654 77799
Q ss_pred HHhCCCeeeec--CCcceEecC-CcccChhhhHHHHHHHHHHHHHHHHHHHHhh-----ccccCCCHHHHHHHHHHHhcc
Q 004944 123 KQLGSLLHKVR--DKCPLYRLD-GNSVDPEIDMKVEADFNRLLDKASRLRQLMG-----EVAMDVSLGSALETFWRVYWD 194 (722)
Q Consensus 123 ~eLGl~~~~~~--~~~~~~~~~-G~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-----~~~~~~s~~~~l~~~~~~~~~ 194 (722)
+++|+...... ....+++.+ |..++.+..... .....++....+++..+. ....+.++.+++... ++
T Consensus 74 ~~lgl~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~e~l~~~---~g- 148 (462)
T TIGR00562 74 KDLGLEHVLVSDATGQRYVLVNRGKLMPVPTKIAP-FVKTGLFSLGGKLRAGMDFIRPASPGKDESVEEFVRRR---FG- 148 (462)
T ss_pred HHcCCCcccccCCCCceEEEECCCceecCCCChHH-HhcCCCCCchhhHHhhhhhccCCCCCCCcCHHHHHHHh---cC-
Confidence 99998765432 223333344 766544322110 000011111111111111 123457888877531 11
Q ss_pred CCCHHHHHHHHHHHHhhhhccchhhHHH----------------HHHhhccC--------CCC--CCCCCeeeeCCChHH
Q 004944 195 SGNAEAMNLFNWHLANLEYANASLLSKL----------------SLAFWDQD--------DPY--DMGGDHCFLPGGNGR 248 (722)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l----------------~~~~~~~~--------~~~--~~~g~~~~~~gG~~~ 248 (722)
......++.+++..........++.. ........ ..+ ..+.....+.+|+++
T Consensus 149 --~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~ 226 (462)
T TIGR00562 149 --DEVVENLIEPLLSGIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTRNLPQGSGLQLTAKKQGQDFQTLATGLET 226 (462)
T ss_pred --HHHHHHHHHHHhcccccCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhcccCccccccccccccCCceEecchhHHH
Confidence 11111122222221111111110000 00000000 000 112226778999999
Q ss_pred HHHHHHHcC---CcccCceEEEEEecCCcEEEEE-CCEEEEeCEEEEcCChhhhhcCCcccCCCCCHHHHHHHHhcCCCc
Q 004944 249 LVQALVENV---PILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGL 324 (722)
Q Consensus 249 L~~aLa~~l---~I~ln~~V~~I~~~~~~v~V~~-~G~~~~AD~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ai~~l~~~~ 324 (722)
|+++|++.+ +|++|++|++|..++++|+|++ +|++++||+||+|+|++.+.. +.|++|+...+++.+++|.+
T Consensus 227 l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~~~~----ll~~~~~~~~~~l~~l~~~~ 302 (462)
T TIGR00562 227 LPEEIEKRLKLTKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPHKAAAG----LLSELSNSASSHLDKIHSPP 302 (462)
T ss_pred HHHHHHHHhccCeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEEECCCHHHHHH----HhcccCHHHHHHHhcCCCCc
Confidence 999998876 4999999999999999999887 777899999999999999875 56778888999999999999
Q ss_pred eeEEEEEcCCCcccCCCCCceeeecCCCCCcceEEEee-----ccccCCCcEEEEEecchhhhhhcCCCHHHHHHHHHHH
Q 004944 325 LNKVAMLFPYVFWETDLDTFGHLTDDSSSRGEFFLFYS-----YATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQI 399 (722)
Q Consensus 325 ~~kV~l~f~~~~w~~~~~~~g~l~~~~~~~~~~~~~~~-----~~~p~g~~vl~~~v~g~~a~~~~~ls~eel~~~vl~~ 399 (722)
+.+|.+.|++++|..+...++++.+.........+.++ ...|++..++++|+.+..+..+.+++++++++.++++
T Consensus 303 ~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~i~~s~~~p~~~p~g~~~l~~~~~g~~~~~~~~~~~ee~~~~v~~~ 382 (462)
T TIGR00562 303 VANVNLGFPEGSVDGELEGFGFLISRSSKFAILGCIFTSKLFPNRAPPGKTLLTAYIGGATDESIVDLSENEIINIVLRD 382 (462)
T ss_pred eEEEEEEEchHHcCCCCCceEEEccCCCCCceEEEEEEccccCCcCCCCcEEEEEEeCCCCCccccCCCHHHHHHHHHHH
Confidence 99999999999998766678888765432222223332 2345666788899988777778889999999999999
Q ss_pred HHhhcCCCCCCCCCCceEEEecCCCCCCCCcccCCCCCCCCCc---cHHHHhcccCCCcEEEcccccccccCccchHHHH
Q 004944 400 LKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGD---DYDIMAESVGDGRLFFAGEATIRRYPATMHGAFL 476 (722)
Q Consensus 400 L~~i~~~~~~~v~~p~~~~~~rW~~~p~~~G~y~~~~pG~~~~---~~~~l~~pv~~~~L~fAGd~ts~~~~g~~eGAi~ 476 (722)
|.++++.. ..|....+++|.. +|..+.+|.... .++.+..+. ++|++||+|+.. .+|++|+.
T Consensus 383 L~~~~gi~----~~p~~~~v~rw~~------a~P~~~~g~~~~~~~i~~~l~~~~--~~l~l~G~~~~g---~~i~~~i~ 447 (462)
T TIGR00562 383 LKKVLNIN----NEPEMLCVTRWHR------AIPQYHVGHDQRLKEARELLESAY--PGVFLTGNSFEG---VGIPDCID 447 (462)
T ss_pred HHHHhCCC----CCCcEEEEeEccc------cCCCCCCChHHHHHHHHHHHHhhC--CCEEEeccccCC---CcHHHHHH
Confidence 99999742 2478889999965 555556665311 112233433 799999999863 48999999
Q ss_pred HHHHHHHHHHHHH
Q 004944 477 SGLRETAKMAHCA 489 (722)
Q Consensus 477 SG~~AA~~Il~~l 489 (722)
||.++|++|++.+
T Consensus 448 sg~~~a~~~~~~~ 460 (462)
T TIGR00562 448 QGKAAASDVLTFL 460 (462)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998865
No 12
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=100.00 E-value=3.5e-37 Score=342.07 Aligned_cols=415 Identities=29% Similarity=0.405 Sum_probs=268.3
Q ss_pred HHHHHHHHHHHHCCCcEEEEecCCCcceeeeeeecC--CCCCCCcceEeeccceEEcCCCCcHHHHHHHHhCCC--eeee
Q 004944 57 LAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKME--GGAGNRISASADLGGSVLTGTLGNPLGILAKQLGSL--LHKV 132 (722)
Q Consensus 57 iAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~T~~~~--g~~gn~~~~~~D~Ga~~~~~~~~~~l~~L~~eLGl~--~~~~ 132 (722)
||||+||++|+++|++|+|||+++++|||++|.+.+ |. .+|+|++++.+.+.+ +..++.++++. ....
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~~t~~~~~~g~-------~~e~G~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 72 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRIRTFRFDNPGF-------TFELGAHRFFGMYPN-LLNLIDELGLELSLETF 72 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBTTS-EEEETTTTE-------EEESSS-EEETTSHH-HHHHHHHHTHHTTEEEE
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCcceEEecCCccce-------eecCCcccccccchh-hHHHHHHhhhccccccc
Confidence 799999999999999999999999999999999998 44 999999999887655 66688888874 2222
Q ss_pred c-CC-cceEecCCcccC--hhhhHHH--------------HHHHHHHHHHHHHHHHHhhccccCCCHHHHHHHHHHHhcc
Q 004944 133 R-DK-CPLYRLDGNSVD--PEIDMKV--------------EADFNRLLDKASRLRQLMGEVAMDVSLGSALETFWRVYWD 194 (722)
Q Consensus 133 ~-~~-~~~~~~~G~~~~--~~~~~~~--------------~~~~~~ll~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~ 194 (722)
. .. ...+...+.... ....... ...+.........+....... ...........+..+...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 151 (450)
T PF01593_consen 73 PFPQIPFVYWPFGDGRPPWPPSQLPRNLNEFAALISLARFFRLLERLNKLRQMLDPFFNKA-EPEFLEDDLESFLEFLDS 151 (450)
T ss_dssp EESSEEEEEEEEEEEEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred ccccceeeeccccccccccccccccccccchhhhhhccccccccccccchhccchhhhhhh-hhhhhhhhhhhhhhhhhh
Confidence 1 11 111111111110 0000000 000000000000000000000 000000011111111100
Q ss_pred C-CCHH-----HHHHHHHHHHhhhhccchhhHHHHHHhhccC--CCCCCCCCeeeeCCChHHHHHHHHH--cCCcccCce
Q 004944 195 S-GNAE-----AMNLFNWHLANLEYANASLLSKLSLAFWDQD--DPYDMGGDHCFLPGGNGRLVQALVE--NVPILYEKT 264 (722)
Q Consensus 195 ~-~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~--~~~~~~g~~~~~~gG~~~L~~aLa~--~l~I~ln~~ 264 (722)
. .... ....+......................+... ......+......|++..+...+.+ +.+|++|++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~i~l~~~ 231 (450)
T PF01593_consen 152 QSFSEIFRESLFRPFFFGAFGFLPDESSAALALLSFPHFDLQDNGGYFPFGGLTVGMGGLSLALALAAEELGGEIRLNTP 231 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTTHHHHHHHHHHCHHHHHHHHTTSSTEEEETTTTHHHHHHHHHHHGGGEESSEE
T ss_pred hhhhhhhHHHHHHhhhhhhhccccchhhhhHHHhhhhhcccccccccccccceeecccchhHHHHHHHhhcCceeecCCc
Confidence 0 0000 0111111111111111111111111111110 0011222344556777777776655 458999999
Q ss_pred EEEEEecCCcEEEEE-CCEEEEeCEEEEcCChhhhhcCCcccCCCCCHHHHHHHHhcCCCceeEEEEEcCCCcccCCCCC
Q 004944 265 VHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDT 343 (722)
Q Consensus 265 V~~I~~~~~~v~V~~-~G~~~~AD~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ai~~l~~~~~~kV~l~f~~~~w~~~~~~ 343 (722)
|++|..++++|+|++ +|++++||+||+|+|+..+.+ +.+.|++|....++++.+++.+..+|++.|+.++|..+...
T Consensus 232 V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~--i~~~p~l~~~~~~a~~~~~~~~~~~v~l~~~~~~~~~~~~~ 309 (450)
T PF01593_consen 232 VTRIEREDGGVTVTTEDGETIEADAVISAVPPSVLKN--ILLLPPLPEDKRRAIENLPYSSVSKVFLGFDRPFWPPDIDF 309 (450)
T ss_dssp EEEEEEESSEEEEEETTSSEEEESEEEE-S-HHHHHT--SEEESTSHHHHHHHHHTEEEEEEEEEEEEESSGGGGSTTTE
T ss_pred ceeccccccccccccccceEEecceeeecCchhhhhh--hhhcccccccccccccccccCcceeEEEeeecccccccccc
Confidence 999999999999998 888999999999999999984 67899999989999999999999999999999999986566
Q ss_pred ceeeecCCCCCcceEEEeecccc--CCCcEEEEEecchhhhhhcCCCHHHHHHHHHHHHHhhcCCCCCCCCCCceEEEec
Q 004944 344 FGHLTDDSSSRGEFFLFYSYATV--AGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTR 421 (722)
Q Consensus 344 ~g~l~~~~~~~~~~~~~~~~~~p--~g~~vl~~~v~g~~a~~~~~ls~eel~~~vl~~L~~i~~~~~~~v~~p~~~~~~r 421 (722)
++++..+.... ...++.....+ ++..++..|+.+..+..+..++++++++.++++|+++++. ..+++|..+.+++
T Consensus 310 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~ 386 (450)
T PF01593_consen 310 FGILYSDGFSP-IGYVSDPSKFPGRPGGGVLTSYVGGPDAPEWDDLSDEEILERVLDDLRKILPG--ASIPDPIDITVTR 386 (450)
T ss_dssp SEEEEESSTSS-EEEEEEECCTTSCTTSEEEEEEEEHHHHHHHTTSCHHHHHHHHHHHHHHHHTT--GGGGEESEEEEEE
T ss_pred cceecccCccc-cccccccccCcccccCCcceeeeeccccchhcccchhhhHHHHHHHhhhcccc--ccccccccccccc
Confidence 77777665222 22222222222 3567888999888888899999999999999999999984 2457788889999
Q ss_pred CCCCCCCCcccCCCCCCCCCccHHHHhcccCCCcEEEcccccccccCccchHHHHHHHHHHHHHH
Q 004944 422 WGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGLRETAKMA 486 (722)
Q Consensus 422 W~~~p~~~G~y~~~~pG~~~~~~~~l~~pv~~~~L~fAGd~ts~~~~g~~eGAi~SG~~AA~~Il 486 (722)
|..+++..++|.+..++.....++.+.+|+. +||||||||+++.+.|+|+||+.||++||++||
T Consensus 387 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~aG~~~~~~~~~~~~gA~~sG~~aA~~il 450 (450)
T PF01593_consen 387 WSRDPYPRGSYSYFPPGQSSQFRPALRTPID-PGLYFAGDWTSPGYPGGIEGAILSGRRAAEEIL 450 (450)
T ss_dssp CTTSTTTSSSCECHCTTHHHHHHHHHHSCBT-TTEEE-SGGGSSSSTTSHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccCCcc-eEEEEeecccCCCCCCcHHHHHHHHHHHHHHhC
Confidence 9999999999998888875446788899873 599999999998777999999999999999986
No 13
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=100.00 E-value=2.2e-36 Score=342.00 Aligned_cols=407 Identities=15% Similarity=0.149 Sum_probs=263.3
Q ss_pred CcEEEECccHHHHHHHHHHHHC------CCcEEEEecCCCcceeeeeeecCCCCCCCcceEeeccceEEcCCCCcHHHHH
Q 004944 48 LRVLVIGAGLAGLAAARQLMRL------GFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGIL 121 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~------G~~V~VLEa~~r~GGr~~T~~~~g~~gn~~~~~~D~Ga~~~~~~~~~~l~~L 121 (722)
++|+|||||+|||+|||+|+++ |++|+|||+++|+|||++|.+..|. .+|+|+|++...+. .+..|
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g~-------~~e~G~~~i~~~~~-~~~~l 73 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDF-------IMESGADSIVARNE-HVMPL 73 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCCE-------EEecCcHHHhcCCH-HHHHH
Confidence 5799999999999999999986 3799999999999999999987765 99999999987654 46779
Q ss_pred HHHhCCCeeeecC--CcceEecCCcccChhhhH------HHHHHHH-HH---HHHHHHHHHHhhc---cccCCCHHHHHH
Q 004944 122 AKQLGSLLHKVRD--KCPLYRLDGNSVDPEIDM------KVEADFN-RL---LDKASRLRQLMGE---VAMDVSLGSALE 186 (722)
Q Consensus 122 ~~eLGl~~~~~~~--~~~~~~~~G~~~~~~~~~------~~~~~~~-~l---l~~~~~~~~~~~~---~~~~~s~~~~l~ 186 (722)
+++||++...... ...+++.+|...+.+... .....+. .+ ...+..+...+.. ..++.|+.++++
T Consensus 74 ~~~lgl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~~l~ 153 (463)
T PRK12416 74 VKDLNLEEEMVYNETGISYIYSDNTLHPIPSDTIFGIPMSVESLFSSTLVSTKGKIVALKDFITKNKEFTKDTSLALFLE 153 (463)
T ss_pred HHHcCCccceecCCCCceEEEECCeEEECCCCCeecCCCChHHhhcCCcCCHHHHHHhhhhhccCCCCCCCCCCHHHHHH
Confidence 9999998665422 233434444433221110 0000110 00 1112222222221 135678888775
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHhhhhccchhhHHH----------------HHHhhccCCC--CCCCCCeeeeCCChHH
Q 004944 187 TFWRVYWDSGNAEAMNLFNWHLANLEYANASLLSKL----------------SLAFWDQDDP--YDMGGDHCFLPGGNGR 248 (722)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l----------------~~~~~~~~~~--~~~~g~~~~~~gG~~~ 248 (722)
.. ++ ......++.+.+..+.......++.. ...+...... ......+++++||+++
T Consensus 154 ~~---~~---~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~gG~~~ 227 (463)
T PRK12416 154 SF---LG---KELVERQIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENKKQFQSAGNKKFVSFKGGLST 227 (463)
T ss_pred Hh---cC---HHHHHHHHHHHhcccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHhhhccCCCCCCceEeeCCCHHH
Confidence 31 11 11112223332222111111111100 0000000000 0112246788999999
Q ss_pred HHHHHHHcC---CcccCceEEEEEecCCcEEEEE-CCEEEEeCEEEEcCChhhhhcCCcccCCCCCHHHHHHHHhcCCCc
Q 004944 249 LVQALVENV---PILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGL 324 (722)
Q Consensus 249 L~~aLa~~l---~I~ln~~V~~I~~~~~~v~V~~-~G~~~~AD~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ai~~l~~~~ 324 (722)
|+++|++.+ +|++|++|++|+.++++|.|++ +|+++.||+||+|+|+..+.. +.+.|+++ +.+.++.+.+
T Consensus 228 l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p~~~~~~--ll~~~~l~----~~~~~~~~~~ 301 (463)
T PRK12416 228 IIDRLEEVLTETVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAPHDIAET--LLQSNELN----EQFHTFKNSS 301 (463)
T ss_pred HHHHHHHhcccccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCCHHHHHh--hcCCcchh----HHHhcCCCCc
Confidence 999999887 4999999999999999998887 778899999999999998875 33445443 4568889999
Q ss_pred eeEEEEEcCCCcccCCCCCceeeecCCCCCcceEEEeec-----cccCCCcEEEEEec--chhhhhhcCCCHHHHHHHHH
Q 004944 325 LNKVAMLFPYVFWETDLDTFGHLTDDSSSRGEFFLFYSY-----ATVAGGPLLIALVA--GEAAHKFESMPPTDAVTKVL 397 (722)
Q Consensus 325 ~~kV~l~f~~~~w~~~~~~~g~l~~~~~~~~~~~~~~~~-----~~p~g~~vl~~~v~--g~~a~~~~~ls~eel~~~vl 397 (722)
+.+|++.|++++|..+...+|++.+.........+.+.. ..+++..++..++. +..+..+.+++++++++.++
T Consensus 302 ~~~v~l~~~~~~~~~~~~g~G~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~dee~~~~~~ 381 (463)
T PRK12416 302 LISIYLGFDILDEQLPADGTGFIVTENSDLHCDACTWTSRKWKHTSGKQKLLVRMFYKSTNPVYETIKNYSEEELVRVAL 381 (463)
T ss_pred eEEEEEEechhhcCCCCCceEEEeeCCCCCeEEEEEeecCCCCCcCCCCeEEEEEEeCCCCCCchhhhcCCHHHHHHHHH
Confidence 999999999887765556788887654322111122221 12333334444554 35667788899999999999
Q ss_pred HHHHhhcCCCCCCCCCCceEEEecCCCCCCCCcccCCCCCCCCC---ccHHHHhcccCCCcEEEcccccccccCccchHH
Q 004944 398 QILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASG---DDYDIMAESVGDGRLFFAGEATIRRYPATMHGA 474 (722)
Q Consensus 398 ~~L~~i~~~~~~~v~~p~~~~~~rW~~~p~~~G~y~~~~pG~~~---~~~~~l~~pv~~~~L~fAGd~ts~~~~g~~eGA 474 (722)
++|+++||.. ..|+...+++|.. ++....+|... ...+.+..+. ++|||||+++.. .+|++|
T Consensus 382 ~~L~~~lG~~----~~p~~~~v~~W~~------a~P~y~~~~~~~~~~~~~~l~~~~--~~l~~aG~~~~g---~~i~~a 446 (463)
T PRK12416 382 YDIEKSLGIK----GEPEVVEVTNWKD------LMPKYHLEHNQAVQSLQEKMMNLY--PNIYLAGASYYG---VGIGAC 446 (463)
T ss_pred HHHHHHhCCC----CCceEEEEEEccc------cCCCcCcCHHHHHHHHHHHHHhhC--CCeEEecccccc---ccHHHH
Confidence 9999999743 4788899999975 22222233211 1123444444 799999999874 479999
Q ss_pred HHHHHHHHHHHHHHH
Q 004944 475 FLSGLRETAKMAHCA 489 (722)
Q Consensus 475 i~SG~~AA~~Il~~l 489 (722)
+.||++||++|++.+
T Consensus 447 i~sg~~aA~~i~~~~ 461 (463)
T PRK12416 447 IGNGKNTANEIIATL 461 (463)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999764
No 14
>PLN02576 protoporphyrinogen oxidase
Probab=100.00 E-value=4.2e-36 Score=342.59 Aligned_cols=414 Identities=19% Similarity=0.192 Sum_probs=269.7
Q ss_pred CCCcEEEECccHHHHHHHHHHHHC-CCcEEEEecCCCcceeeeeeecCCCCCCCcceEeeccceEEcCCCCcHHHHHHHH
Q 004944 46 NKLRVLVIGAGLAGLAAARQLMRL-GFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQ 124 (722)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~-G~~V~VLEa~~r~GGr~~T~~~~g~~gn~~~~~~D~Ga~~~~~~~~~~l~~L~~e 124 (722)
.++||+|||||+|||+||++|+++ |++|+|||+++++|||++|.+.+|+ .+|.|+|++...+ ..+..++++
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~~~g~-------~~d~G~~~~~~~~-~~~~~l~~~ 82 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVSEDGF-------IWEEGPNSFQPSD-PELTSAVDS 82 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEeccCCe-------EEecCCchhccCc-HHHHHHHHc
Confidence 448999999999999999999999 9999999999999999999988765 9999999997654 334556555
Q ss_pred hCCCeeeec---CCcceEecCCcccChhhhHHH--HHHHHHHHHHHHHHHHHhh-----ccccCCCHHHHHHHHHHHhcc
Q 004944 125 LGSLLHKVR---DKCPLYRLDGNSVDPEIDMKV--EADFNRLLDKASRLRQLMG-----EVAMDVSLGSALETFWRVYWD 194 (722)
Q Consensus 125 LGl~~~~~~---~~~~~~~~~G~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~-----~~~~~~s~~~~l~~~~~~~~~ 194 (722)
|+...... ....+++.+|+....+..... ...+..+.+.+......+. ....+.++++|+... ++
T Consensus 83 -gl~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~~l~~~---~g- 157 (496)
T PLN02576 83 -GLRDDLVFPDPQAPRYVVWNGKLRPLPSNPIDLPTFDLLSAPGKIRAGLGAFGWKRPPPPGREESVGEFVRRH---LG- 157 (496)
T ss_pred -CChhheecCCCCceEEEEECCEEEEcCCChHHhcCcCcCChhHHHHHhHHHhhccCCCCCCCCCcHHHHHHHh---cC-
Confidence 77644321 122344567776654432110 0000011111111111111 113567888877531 11
Q ss_pred CCCHHHHHHHHHHHHhhhhccc--------------------hhhHHHHHHhhcc--------CC---CCCCCCCeeeeC
Q 004944 195 SGNAEAMNLFNWHLANLEYANA--------------------SLLSKLSLAFWDQ--------DD---PYDMGGDHCFLP 243 (722)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~--------------------~~l~~l~~~~~~~--------~~---~~~~~g~~~~~~ 243 (722)
......++.+++........ +.+.......... .+ ....+...+.++
T Consensus 158 --~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (496)
T PLN02576 158 --DEVFERLIDPFVSGVYAGDPSSLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAKKNPKPEPRDPRLPKPKGQTVGSFR 235 (496)
T ss_pred --HHHHHHHHHHHhCceecCCHHHHhHHHHhHHHHHHHHhcCcHHHHHHHhhhhhcccccccccccccccccCCeeEecc
Confidence 11112222222221111111 1111000000000 00 000123457789
Q ss_pred CChHHHHHHHHHcCC---cccCceEEEEEecCCc-EEEEE---CC-EEEEeCEEEEcCChhhhhcCCcccCCCCCHHHHH
Q 004944 244 GGNGRLVQALVENVP---ILYEKTVHTIRYGSDG-VQVLA---GS-QVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLD 315 (722)
Q Consensus 244 gG~~~L~~aLa~~l~---I~ln~~V~~I~~~~~~-v~V~~---~G-~~~~AD~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ 315 (722)
+|+++|+++|++.+. |++|++|++|+..+++ |.|+. +| ++++||+||+|+|+.++.. +.+++++...+
T Consensus 236 gG~~~L~~~la~~l~~~~i~l~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~P~~~l~~----ll~~~~~~~~~ 311 (496)
T PLN02576 236 GGLQTLPDALAKRLGKDKVKLNWKVLSLSKNDDGGYSLTYDTPEGKVNVTAKAVVMTAPLYVVSE----MLRPKSPAAAD 311 (496)
T ss_pred chHHHHHHHHHHhhCcCcEEcCCEEEEEEECCCCcEEEEEecCCCceeEEeCEEEECCCHHHHHH----HhcccCHHHHH
Confidence 999999999998875 9999999999998886 66654 44 4799999999999999986 34456677888
Q ss_pred HHHhcCCCceeEEEEEcCCCcccC------CCCCceeeecCCCCCcceEEEe-ec----cccCCCcEEEEEecchhhhhh
Q 004944 316 AIKRLGYGLLNKVAMLFPYVFWET------DLDTFGHLTDDSSSRGEFFLFY-SY----ATVAGGPLLIALVAGEAAHKF 384 (722)
Q Consensus 316 ai~~l~~~~~~kV~l~f~~~~w~~------~~~~~g~l~~~~~~~~~~~~~~-~~----~~p~g~~vl~~~v~g~~a~~~ 384 (722)
++.+++|.++.+|++.|++++|.. +...++.+.+.........+.+ +. ..|++..+++.|+.+..+..+
T Consensus 312 ~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~lg~~~~s~~~p~~~~~~~~~l~~~~~~~~~~~~ 391 (496)
T PLN02576 312 ALPEFYYPPVAAVTTSYPKEAVKRERLIDGPLEGFGQLHPRKQGVKTLGTIYSSSLFPDRAPEGRVLLLNYIGGSRNTGI 391 (496)
T ss_pred HhccCCCCceEEEEEEEchHHcccccccCCCCCceEEEccCCCCCceEEEEeecCcCCCCCCCCCEEEEEEECCCCCccc
Confidence 999999999999999999999875 4456777665432211121222 22 234556678889988878888
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCCCCCCCCCceEEEecCCCCCCCCcccCCCCCCCCCccHHHHhcccC---CCcEEEccc
Q 004944 385 ESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVG---DGRLFFAGE 461 (722)
Q Consensus 385 ~~ls~eel~~~vl~~L~~i~~~~~~~v~~p~~~~~~rW~~~p~~~G~y~~~~pG~~~~~~~~l~~pv~---~~~L~fAGd 461 (722)
.+++++++++.++++|.++++.. ..+.|....+++|.. ++..+.+|.. ...+.+.+.+. .++||+|||
T Consensus 392 ~~~s~ee~~~~~~~~L~~~~g~~--~~~~p~~~~~~~w~~------a~P~~~~g~~-~~~~~~~~~l~~~~~~~l~~aG~ 462 (496)
T PLN02576 392 ASASEEELVEAVDRDLRKLLLKP--GAPPPKVVGVRVWPK------AIPQYLLGHL-DVLEAAEKMEKDLGLPGLFLGGN 462 (496)
T ss_pred ccCCHHHHHHHHHHHHHHHhCCC--CCCCCcEEEEeEcCc------ccCCCCcCHH-HHHHHHHHHHHhcCCCCEEEecc
Confidence 88999999999999999999853 224567777889965 4444445542 11222222221 169999999
Q ss_pred ccccccCccchHHHHHHHHHHHHHHHHHh
Q 004944 462 ATIRRYPATMHGAFLSGLRETAKMAHCAN 490 (722)
Q Consensus 462 ~ts~~~~g~~eGAi~SG~~AA~~Il~~l~ 490 (722)
|+.. .++++|+.||.++|++|++.+.
T Consensus 463 ~~~g---~~i~~ai~sg~~aA~~i~~~~~ 488 (496)
T PLN02576 463 YRGG---VALGKCVESGYEAADLVISYLE 488 (496)
T ss_pred ccCC---ccHHHHHHHHHHHHHHHHHHHh
Confidence 9984 4999999999999999998764
No 15
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=100.00 E-value=2.7e-35 Score=331.73 Aligned_cols=404 Identities=23% Similarity=0.254 Sum_probs=259.5
Q ss_pred CcEEEECccHHHHHHHHHHHHCC--CcEEEEecCCCcceeeeeeecCCCCCCCcceEeeccceEEcCCCCcHHHHHHHHh
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLG--FRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQL 125 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G--~~V~VLEa~~r~GGr~~T~~~~g~~gn~~~~~~D~Ga~~~~~~~~~~l~~L~~eL 125 (722)
++|||||||+|||+||+.|+++| ++|+|||+++++|||++|.+.+|. .+|+|+|++.+.+.+ +..+++++
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~~g~-------~~d~G~~~~~~~~~~-~~~l~~~l 72 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDGF-------PIELGPESFLARKPS-APALVKEL 72 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEeeCCe-------EEecChHHhcCCcHH-HHHHHHHc
Confidence 46999999999999999999988 899999999999999999998776 999999988776644 77899999
Q ss_pred CCCeeeec--CCcceEecCCcccChhhhH-------HHHHHHHHHHHHHHHHHHHhh------ccccCCCHHHHHHHHHH
Q 004944 126 GSLLHKVR--DKCPLYRLDGNSVDPEIDM-------KVEADFNRLLDKASRLRQLMG------EVAMDVSLGSALETFWR 190 (722)
Q Consensus 126 Gl~~~~~~--~~~~~~~~~G~~~~~~~~~-------~~~~~~~~ll~~~~~~~~~~~------~~~~~~s~~~~l~~~~~ 190 (722)
|+...... ....+++.+|.....+... ........++....+++.... ...++.++.+++...
T Consensus 73 gl~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~l~~~-- 150 (451)
T PRK11883 73 GLEDELVANTTGQSYIYVNGKLHPIPPGTVMGIPTSIAPFLFAGLVSPIGKLRAAADLRPPRWKPGQDQSVGAFFRRR-- 150 (451)
T ss_pred CCccceecCCCCcceEEECCeEEECCCCCeeccCCCchhhhcCCCCCHHHHHHhhCcccCCCCCCCCCcCHHHHHHHh--
Confidence 99755432 2334555566644322110 000000111111111111111 113567788777531
Q ss_pred HhccCCCHHH-HHHHHHHHHhhhhccchhhHHHH----------------HHhhccCCCC--CCCCCeeeeCCChHHHHH
Q 004944 191 VYWDSGNAEA-MNLFNWHLANLEYANASLLSKLS----------------LAFWDQDDPY--DMGGDHCFLPGGNGRLVQ 251 (722)
Q Consensus 191 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~l~----------------~~~~~~~~~~--~~~g~~~~~~gG~~~L~~ 251 (722)
+ .... ..++.+.+..........++... .......... ..+..++++++|++.|++
T Consensus 151 -~----~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~ 225 (451)
T PRK11883 151 -F----GDEVVENLIEPLLSGIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKKKTKGVFGTLKGGLQSLIE 225 (451)
T ss_pred -c----cHHHHHHHHHHhhceeecCChHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccCCCCCCceEeeccHHHHHHH
Confidence 1 1111 22222222111111111110000 0000000000 113346789999999999
Q ss_pred HHHHcCC---cccCceEEEEEecCCcEEEEE-CCEEEEeCEEEEcCChhhhhcCCcccCCCCCHHHHHHHHhcCCCceeE
Q 004944 252 ALVENVP---ILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNK 327 (722)
Q Consensus 252 aLa~~l~---I~ln~~V~~I~~~~~~v~V~~-~G~~~~AD~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ai~~l~~~~~~k 327 (722)
+|++.++ |++|++|++|..++++|+|++ +|++++||+||+|+|+..+.+. .+ ++...++++++++++..+
T Consensus 226 ~l~~~l~~~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~~~~~~l----~~--~~~~~~~~~~~~~~~~~~ 299 (451)
T PRK11883 226 ALEEKLPAGTIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPHPVLPSL----FV--APPAFALFKTIPSTSVAT 299 (451)
T ss_pred HHHHhCcCCeEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCHHHHHHh----cc--ChhHHHHHhCCCCCceEE
Confidence 9998774 999999999999988888887 8889999999999999999862 11 234567889999999999
Q ss_pred EEEEcCCCcccCCCCCceeeecCCCCCcceEE-Eee----ccccCCCcEEEEEecchhhhhhcCCCHHHHHHHHHHHHHh
Q 004944 328 VAMLFPYVFWETDLDTFGHLTDDSSSRGEFFL-FYS----YATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKG 402 (722)
Q Consensus 328 V~l~f~~~~w~~~~~~~g~l~~~~~~~~~~~~-~~~----~~~p~g~~vl~~~v~g~~a~~~~~ls~eel~~~vl~~L~~ 402 (722)
|++.|+++++.. ...++++...........+ +.+ ...|++..++..++..........++++++++.++++|++
T Consensus 300 v~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 378 (451)
T PRK11883 300 VALAFPESATNL-PDGTGFLVARNSDYTITACTWTSKKWPHTTPEGKVLLRLYVGRPGDEAVVDATDEELVAFVLADLSK 378 (451)
T ss_pred EEEEeccccCCC-CCceEEEecCCCCCcEEEEEeEcCcCCCCCCCCcEEEEEecCCCCCchhccCCHHHHHHHHHHHHHH
Confidence 999999986322 2345555442221111222 222 2234455555555544434445678999999999999999
Q ss_pred hcCCCCCCCCCCceEEEecCCCCCCCCcccCCCCCCCCCccHHHHhcccC-CCcEEEcccccccccCccchHHHHHHHHH
Q 004944 403 IYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVG-DGRLFFAGEATIRRYPATMHGAFLSGLRE 481 (722)
Q Consensus 403 i~~~~~~~v~~p~~~~~~rW~~~p~~~G~y~~~~pG~~~~~~~~l~~pv~-~~~L~fAGd~ts~~~~g~~eGAi~SG~~A 481 (722)
+++.. .++....+++|.. +|..+.||.. .....+..++. .++|||||+|+.+ +++++|+.||+++
T Consensus 379 ~~g~~----~~~~~~~~~rw~~------a~p~~~~~~~-~~~~~l~~~l~~~~~l~~aG~~~~g---~~i~~av~sg~~~ 444 (451)
T PRK11883 379 VMGIT----GDPEFTIVQRWKE------AMPQYGVGHI-ERVAELRAGLPHYPGLYVAGASFEG---VGLPDCIAQAKRA 444 (451)
T ss_pred HhCCC----CCceEEEEeecCc------cCCCCCccHH-HHHHHHHHhhhhCCCEEEECcccCC---ccHHHHHHHHHHH
Confidence 99742 3567889999965 5555566652 22333333322 1699999999863 5899999999999
Q ss_pred HHHHHH
Q 004944 482 TAKMAH 487 (722)
Q Consensus 482 A~~Il~ 487 (722)
|++|+.
T Consensus 445 a~~i~~ 450 (451)
T PRK11883 445 AARLLA 450 (451)
T ss_pred HHHHHh
Confidence 999975
No 16
>PRK07233 hypothetical protein; Provisional
Probab=100.00 E-value=1.8e-33 Score=315.19 Aligned_cols=407 Identities=18% Similarity=0.199 Sum_probs=252.1
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeeeeeecCCCCCCCcceEeeccceEEcCCCCcHHHHHHHHhCCC
Q 004944 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLGSL 128 (722)
Q Consensus 49 dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~T~~~~g~~gn~~~~~~D~Ga~~~~~~~~~~l~~L~~eLGl~ 128 (722)
+|||||||+|||+||++|+++|++|+|||+++++||++.|++.+|+ .+|.|+|++...+ ..+..+++++|+.
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~g~-------~~d~g~~~~~~~~-~~~~~l~~~lg~~ 72 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGGL-------PIERFYHHIFKSD-EALLELLDELGLE 72 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCc-------chhhhhhhhcccc-HHHHHHHHHcCCC
Confidence 5999999999999999999999999999999999999999998776 8999999987765 4577899999986
Q ss_pred eeeec-CCcceEecCCcccChhhhHHHH-----HHHHHHHHHHHHHHHHh-h--ccccCCCHHHHHHHHHHHhccCCCHH
Q 004944 129 LHKVR-DKCPLYRLDGNSVDPEIDMKVE-----ADFNRLLDKASRLRQLM-G--EVAMDVSLGSALETFWRVYWDSGNAE 199 (722)
Q Consensus 129 ~~~~~-~~~~~~~~~G~~~~~~~~~~~~-----~~~~~ll~~~~~~~~~~-~--~~~~~~s~~~~l~~~~~~~~~~~~~~ 199 (722)
..... .....++.+|...+........ .....+......+.... . ...++.++.+++... . ..+.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~---~---~~~~ 146 (434)
T PRK07233 73 DKLRWRETKTGYYVDGKLYPLGTPLELLRFPHLSLIDKFRLGLLTLLARRIKDWRALDKVPAEEWLRRW---S---GEGV 146 (434)
T ss_pred CceeeccCceEEEECCeEecCCCHHHHHcCCCCCHHHHHHhHHHHHhhhhcccccccccccHHHHHHHh---c---CHHH
Confidence 44322 2222233455443321110000 00000000000000000 0 112456777766532 1 1222
Q ss_pred HHHHHHHHHHhhhhccchhhHHHHHH-hhccC---CCCCCCCCeeeeCCChHHHHHHHHH-----cCCcccCceEEEEEe
Q 004944 200 AMNLFNWHLANLEYANASLLSKLSLA-FWDQD---DPYDMGGDHCFLPGGNGRLVQALVE-----NVPILYEKTVHTIRY 270 (722)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~---~~~~~~g~~~~~~gG~~~L~~aLa~-----~l~I~ln~~V~~I~~ 270 (722)
...++.+.+..........++..... .+... .........++++||++.|+++|++ +.+|++|++|++|..
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~g~~v~~~~~V~~i~~ 226 (434)
T PRK07233 147 YEVFWEPLLESKFGDYADDVSAAWLWSRIKRRGNRRYSLFGEKLGYLEGGFATLIDALAEAIEARGGEIRLGTPVTSVVI 226 (434)
T ss_pred HHHHHHHHHhcccCCCccccCHHHHHHHHhhhhccccccCCceEeccCCCHHHHHHHHHHHHHhcCceEEeCCCeeEEEE
Confidence 33444444433333222222221110 11100 0000122367889999999999976 456999999999999
Q ss_pred cCCcEEEEE-CCEEEEeCEEEEcCChhhhhcCCcccCCCCCHHHHHHHHhcCCCceeEEEEEcCCCcccCCCCCceeeec
Q 004944 271 GSDGVQVLA-GSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDTFGHLTD 349 (722)
Q Consensus 271 ~~~~v~V~~-~G~~~~AD~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ai~~l~~~~~~kV~l~f~~~~w~~~~~~~g~l~~ 349 (722)
+++++.+.. ++++++||+||+|+|+..+.. +.|.+++...+.++.+.+.+..++++.|+++.+. .+.....
T Consensus 227 ~~~~~~~~~~~~~~~~ad~vI~a~p~~~~~~----ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~ 298 (434)
T PRK07233 227 DGGGVTGVEVDGEEEDFDAVISTAPPPILAR----LVPDLPADVLARLRRIDYQGVVCMVLKLRRPLTD----YYWLNIN 298 (434)
T ss_pred cCCceEEEEeCCceEECCEEEECCCHHHHHh----hcCCCcHHHHhhhcccCccceEEEEEEecCCCCC----Cceeeec
Confidence 888876555 778999999999999998875 4477777777889999999999999999987543 1111111
Q ss_pred CCCC-CcceEEE---eeccccCCCcEE--EEEecchhhhhhcCCCHHHHHHHHHHHHHhhcCCCCCCCCCCceEEEecCC
Q 004944 350 DSSS-RGEFFLF---YSYATVAGGPLL--IALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWG 423 (722)
Q Consensus 350 ~~~~-~~~~~~~---~~~~~p~g~~vl--~~~v~g~~a~~~~~ls~eel~~~vl~~L~~i~~~~~~~v~~p~~~~~~rW~ 423 (722)
.+.. ....... .....|++...+ .+|+.+.. .+..++++++++.++++|.++++.. ....+....+.+|
T Consensus 299 ~~~~~~~~~~~~s~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~L~~~~p~~--~~~~~~~~~~~r~- 373 (434)
T PRK07233 299 DPGAPFGGVIEHTNLVPPERYGGEHLVYLPKYLPGDH--PLWQMSDEELLDRFLSYLRKMFPDF--DRDDVRAVRISRA- 373 (434)
T ss_pred CCCCCcceEEEecccCCccccCCceEEEEeeecCCCC--hhhcCCHHHHHHHHHHHHHHhCCCC--ChhheeeEEEEEe-
Confidence 1111 0111111 111223455443 33444433 2456789999999999999999732 1223444455555
Q ss_pred CCCCCCcccCCCCCCCCCccHHHHhcccCCCcEEEcccccccccCccchHHHHHHHHHHHHHHHHHh
Q 004944 424 GDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGLRETAKMAHCAN 490 (722)
Q Consensus 424 ~~p~~~G~y~~~~pG~~~~~~~~l~~pv~~~~L~fAGd~ts~~~~g~~eGAi~SG~~AA~~Il~~l~ 490 (722)
++..+ ...||.. ...+.+.+|+ +|||||||++...+.++|++|+.||.+||++|++.++
T Consensus 374 --~~a~~---~~~~g~~-~~~~~~~~~~--~~l~~aG~~~~~~~~~~~~~Ai~sG~~aA~~i~~~~~ 432 (434)
T PRK07233 374 --PYAQP---IYEPGYL-DKIPPYDTPI--EGLYLAGMSQIYPEDRSINGSVRAGRRVAREILEDRR 432 (434)
T ss_pred --ccccc---cccCchh-hcCCCcccCc--CCEEEeCCcccCCccCchhHHHHHHHHHHHHHhhhhc
Confidence 33333 2345532 2344456676 8999999965443456999999999999999998764
No 17
>PLN02612 phytoene desaturase
Probab=100.00 E-value=1.2e-32 Score=316.85 Aligned_cols=410 Identities=21% Similarity=0.262 Sum_probs=245.2
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeeeeeec-CCCCCCCcceEeeccceEEcCCCCcHHHHHHHHh
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKM-EGGAGNRISASADLGGSVLTGTLGNPLGILAKQL 125 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~T~~~-~g~~gn~~~~~~D~Ga~~~~~~~~~~l~~L~~eL 125 (722)
..+|+|||||++||+||++|+++|++|+|+|+++++||++.|++. +|. .+|.|+|++.+.+.+ +..++++|
T Consensus 93 ~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~-------~~D~G~h~~~g~~~~-~~~ll~el 164 (567)
T PLN02612 93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGD-------WYETGLHIFFGAYPN-VQNLFGEL 164 (567)
T ss_pred CCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCC-------EEcCCceEEeCCCch-HHHHHHHh
Confidence 378999999999999999999999999999999999999999875 343 899999999988766 66799999
Q ss_pred CCCeeeecC-CcceE-ec--CCccc--C------hhhhHHHHHHH--HHHHHHHHHHHH---Hh---h------ccccCC
Q 004944 126 GSLLHKVRD-KCPLY-RL--DGNSV--D------PEIDMKVEADF--NRLLDKASRLRQ---LM---G------EVAMDV 179 (722)
Q Consensus 126 Gl~~~~~~~-~~~~~-~~--~G~~~--~------~~~~~~~~~~~--~~ll~~~~~~~~---~~---~------~~~~~~ 179 (722)
|+....... ....+ .. .+... . .+..... ..+ ...+....+++. .. . ...++.
T Consensus 165 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~P~~l~~~~-~~l~~~~~ls~~~kl~~~~~~~~~~~~~~~~~~~~d~~ 243 (567)
T PLN02612 165 GINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIW-AILRNNEMLTWPEKIKFAIGLLPAIVGGQAYVEAQDGL 243 (567)
T ss_pred CCcccceecccceEEEecCCCCceeeCcCchhcCChhhhhH-HHHhcCccCCHHHHHHHHHhhhHHhcccchhhhhcCcC
Confidence 996542211 11111 11 11110 1 1110000 000 000011111111 00 0 112456
Q ss_pred CHHHHHHHHHHHhccCCCHHHH-HHHHHHHHhhhhccchhhHHHHHH-hhccCCCCCCCCCeeeeCCCh-HHHHHHHHH-
Q 004944 180 SLGSALETFWRVYWDSGNAEAM-NLFNWHLANLEYANASLLSKLSLA-FWDQDDPYDMGGDHCFLPGGN-GRLVQALVE- 255 (722)
Q Consensus 180 s~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~~~~~g~~~~~~gG~-~~L~~aLa~- 255 (722)
++.+|++... .++... .++.+.+..+...+...++..... .+........+....++.|+. +.++++|++
T Consensus 244 Sv~e~l~~~~------~~~~~~~~~~~~l~~~~~~~~p~~~S~~~~l~~l~~~l~~~~gs~~~~~~G~~~~~l~~~l~~~ 317 (567)
T PLN02612 244 SVKEWMRKQG------VPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPIVDH 317 (567)
T ss_pred cHHHHHHhcC------CCHHHHHHHHHHHHHHhcCCCHHHhhHHHHHHHHHHHHhccCCceEeeecCCchHHHHHHHHHH
Confidence 7776665411 122222 234443333322222222111110 000000001122233444554 456666654
Q ss_pred ----cCCcccCceEEEEEecCCcE--EEEE-CCEEEEeCEEEEcCChhhhhcCCcccCCC--CCHHHHHHHHhcCCCcee
Q 004944 256 ----NVPILYEKTVHTIRYGSDGV--QVLA-GSQVFEGDMVLCTVPLGVLKSGSIKFIPE--LPQRKLDAIKRLGYGLLN 326 (722)
Q Consensus 256 ----~l~I~ln~~V~~I~~~~~~v--~V~~-~G~~~~AD~VI~AvP~~~l~~~~i~~~p~--Lp~~~~~ai~~l~~~~~~ 326 (722)
|.+|++|++|++|..+++++ .|.+ +|+++.||+||+|+|+..++. +.|+ .+....+.++++.+.++.
T Consensus 318 l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~~~l~~----Ll~~~~~~~~~~~~l~~l~~~~v~ 393 (567)
T PLN02612 318 FQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPVDILKL----LLPDQWKEIPYFKKLDKLVGVPVI 393 (567)
T ss_pred HHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCHHHHHH----hCcchhcCcHHHHHHHhcCCCCeE
Confidence 56799999999999876652 3555 888999999999999998875 2232 122455667788888999
Q ss_pred EEEEEcCCCcccCCCCCceeeecCCCCCcceEEEeecc------ccCCCcEEEEEecchhhhhhcCCCHHHHHHHHHHHH
Q 004944 327 KVAMLFPYVFWETDLDTFGHLTDDSSSRGEFFLFYSYA------TVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQIL 400 (722)
Q Consensus 327 kV~l~f~~~~w~~~~~~~g~l~~~~~~~~~~~~~~~~~------~p~g~~vl~~~v~g~~a~~~~~ls~eel~~~vl~~L 400 (722)
+|++.|++++|... . ..+....... ..+.+.+ .+++..++...+. .+..|..++++++++.++++|
T Consensus 394 ~v~l~~dr~~~~~~-~--~~~~~~~~~~---~~~~d~S~~~~~~~~~~~~ll~~~~~--~a~~~~~~sdeei~e~vl~~L 465 (567)
T PLN02612 394 NVHIWFDRKLKNTY-D--HLLFSRSPLL---SVYADMSTTCKEYYDPNKSMLELVFA--PAEEWISRSDEDIIDATMKEL 465 (567)
T ss_pred EEEEEECcccCCCC-C--ceeecCCCCc---eeehhhhhcchhhcCCCCeEEEEEEE--cChhhhcCCHHHHHHHHHHHH
Confidence 99999999988532 1 1222211111 1111111 1334444444432 567888999999999999999
Q ss_pred HhhcCCCCCCCCC--CceEEEecCCCCCCCCcccCCCCCCCCCccHHHHhcccCCCcEEEcccccccccCccchHHHHHH
Q 004944 401 KGIYEPKGINVPE--PIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSG 478 (722)
Q Consensus 401 ~~i~~~~~~~v~~--p~~~~~~rW~~~p~~~G~y~~~~pG~~~~~~~~l~~pv~~~~L~fAGd~ts~~~~g~~eGAi~SG 478 (722)
.++||.. ..++ ........+...|++ .|.. .||.. ..++.+.+|+ +||||||||+..+|+++||||+.||
T Consensus 466 ~~lfp~~--~~~~~~~~~i~~~~~v~~P~a--~~~~-~pg~~-~~rp~~~tPi--~~l~lAGd~t~~~~~~smeGAv~SG 537 (567)
T PLN02612 466 AKLFPDE--ISADQSKAKILKYHVVKTPRS--VYKT-VPNCE-PCRPLQRSPI--EGFYLAGDYTKQKYLASMEGAVLSG 537 (567)
T ss_pred HHHCCcc--cccccCCceEEEEEEeccCCc--eEEe-CCCCc-ccCccccCcc--CCEEEeecceeCCchhhHHHHHHHH
Confidence 9999853 1111 112222233334432 2322 34432 2345567888 8999999999988999999999999
Q ss_pred HHHHHHHHHHHhh
Q 004944 479 LRETAKMAHCANA 491 (722)
Q Consensus 479 ~~AA~~Il~~l~~ 491 (722)
++||++|++.++.
T Consensus 538 ~~AA~~I~~~~~~ 550 (567)
T PLN02612 538 KLCAQSIVQDYEL 550 (567)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999998855
No 18
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=100.00 E-value=1.6e-32 Score=309.60 Aligned_cols=406 Identities=20% Similarity=0.239 Sum_probs=245.7
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeeeeeec-CCCCCCCcceEeeccceEEcCCCCcHHHHHHHHhCC
Q 004944 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKM-EGGAGNRISASADLGGSVLTGTLGNPLGILAKQLGS 127 (722)
Q Consensus 49 dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~T~~~-~g~~gn~~~~~~D~Ga~~~~~~~~~~l~~L~~eLGl 127 (722)
+|+|||||++||+||++|+++|++|+|||+++++||++.|.+. +|. .+|.|+|++.+.+.+ +..++++||+
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~-------~~d~G~~~~~~~~~~-~~~l~~~lg~ 72 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGD-------WYETGLHIFFGAYPN-MLQLLKELNI 72 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCC-------EEEcCcceeccCCch-HHHHHHHcCC
Confidence 5999999999999999999999999999999999999999853 444 899999999887765 5668999998
Q ss_pred Ceeeec-CCcceEec---CCcc-------cChhhhHHHHHH-HHH---HHHHHH---HHHHH-hh-----ccccCCCHHH
Q 004944 128 LLHKVR-DKCPLYRL---DGNS-------VDPEIDMKVEAD-FNR---LLDKAS---RLRQL-MG-----EVAMDVSLGS 183 (722)
Q Consensus 128 ~~~~~~-~~~~~~~~---~G~~-------~~~~~~~~~~~~-~~~---ll~~~~---~~~~~-~~-----~~~~~~s~~~ 183 (722)
...... .....+.. ++.. ++.+........ ... +.+.+. .+... .. ...++.++.+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 152 (453)
T TIGR02731 73 EDRLQWKSHSMIFNQPDKPGTFSRFDFPDIPAPFNGVAAILRNNDMLTWPEKIKFAIGLLPAIVRGQKYVEEQDKYTVTE 152 (453)
T ss_pred ccceeecCCceEEecCCCCcceeeccCCCCCCCHHHHHHHhcCcCCCCHHHHHHHHHHhHHHHhcCccchhhhccCCHHH
Confidence 654322 11122211 1111 111111100000 000 001111 01100 00 0124667777
Q ss_pred HHHHHHHHhccCCCHHHH-HHHHHHHHhhhhccchhhHHHHHH-hhccCCCCCCCCCeeeeCCC-hHHHHHHHHH-----
Q 004944 184 ALETFWRVYWDSGNAEAM-NLFNWHLANLEYANASLLSKLSLA-FWDQDDPYDMGGDHCFLPGG-NGRLVQALVE----- 255 (722)
Q Consensus 184 ~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~~~~~g~~~~~~gG-~~~L~~aLa~----- 255 (722)
+++.. ..++... .++.+....+.......++..... .+...-....+....+..|+ ++.++++|.+
T Consensus 153 ~l~~~------~~~~~~~~~~~~pl~~~~~~~~p~~~S~~~~~~~l~~~~~~~~g~~~~~~~g~~~~~l~~~l~~~l~~~ 226 (453)
T TIGR02731 153 WLRKQ------GVPERVNDEVFIAMSKALNFINPDELSMTVVLTALNRFLQERHGSKMAFLDGAPPERLCQPIVDYITSR 226 (453)
T ss_pred HHHHc------CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHhcCCCCeeEeecCCChHHHHHHHHHHHHhc
Confidence 76531 1233322 234444333332222222221111 00100000111112233333 3445555543
Q ss_pred cCCcccCceEEEEEecCCc-E-EEEE-CCE-----EEEeCEEEEcCChhhhhcCCcccCCC-CC-HHHHHHHHhcCCCce
Q 004944 256 NVPILYEKTVHTIRYGSDG-V-QVLA-GSQ-----VFEGDMVLCTVPLGVLKSGSIKFIPE-LP-QRKLDAIKRLGYGLL 325 (722)
Q Consensus 256 ~l~I~ln~~V~~I~~~~~~-v-~V~~-~G~-----~~~AD~VI~AvP~~~l~~~~i~~~p~-Lp-~~~~~ai~~l~~~~~ 325 (722)
|.+|++|++|++|..++++ + .|++ +++ ++.||.||+|+|++.+.+ +.|. ++ ....+.+.++++.++
T Consensus 227 g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~~~~----lL~~~~~~~~~~~~~~~~~~~~~ 302 (453)
T TIGR02731 227 GGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDIFKL----LLPQPWKQMPFFQKLNGLEGVPV 302 (453)
T ss_pred CCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHHHHh----hCchhhhcCHHHHHhhcCCCCcE
Confidence 5679999999999875544 4 3444 454 789999999999998765 2333 21 234566777888899
Q ss_pred eEEEEEcCCCcccCCCCCceeeecCCCCCcceEEEee----ccccCCCcEEEEEecchhhhhhcCCCHHHHHHHHHHHHH
Q 004944 326 NKVAMLFPYVFWETDLDTFGHLTDDSSSRGEFFLFYS----YATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILK 401 (722)
Q Consensus 326 ~kV~l~f~~~~w~~~~~~~g~l~~~~~~~~~~~~~~~----~~~p~g~~vl~~~v~g~~a~~~~~ls~eel~~~vl~~L~ 401 (722)
.+|++.|++++|... +.+........ ....++ ...+++..++..++. . +..+..++++|+++.++++|.
T Consensus 303 ~~v~l~~~~~~~~~~----~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~l~~~~~~-~-~~~~~~~~~ee~~~~v~~~L~ 375 (453)
T TIGR02731 303 INVHIWFDRKLTTVD----HLLFSRSPLLS-VYADMSETCKEYADPDKSMLELVFA-P-AADWIGRSDEEIIDATMAELA 375 (453)
T ss_pred EEEEEEEccccCCCC----ceeeeCCCcce-eecchhhhChhhcCCCCeEEEEEec-C-hhhhhcCCHHHHHHHHHHHHH
Confidence 999999999987532 22222211111 001111 112344445554443 2 356778999999999999999
Q ss_pred hhcCCCCCCCCCCceEEEecCCCCCCCCcccCCCCCCCCCccHHHHhcccCCCcEEEcccccccccCccchHHHHHHHHH
Q 004944 402 GIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGLRE 481 (722)
Q Consensus 402 ~i~~~~~~~v~~p~~~~~~rW~~~p~~~G~y~~~~pG~~~~~~~~l~~pv~~~~L~fAGd~ts~~~~g~~eGAi~SG~~A 481 (722)
++||.. .....+.+...++|..+||+. | ...||. ....+.+++|+ +||||||+|++.+|+|+||||+.||.+|
T Consensus 376 ~~~~~~-~~~~~~~~~~~~~~~~~p~a~--~-~~~pg~-~~~~~~~~~p~--~~l~~AG~~~a~~~~g~~egAi~SG~~A 448 (453)
T TIGR02731 376 KLFPNH-IKADSPAKILKYKVVKTPRSV--Y-KTTPGR-QQYRPHQKTPI--PNFFLAGDYTKQKYLASMEGAVLSGKLC 448 (453)
T ss_pred HhCCcc-cCCCCCceEEEEEEEECCCce--e-ccCCCC-hhhCccccCcc--CCEEEeehhccCcccccHHHHHHHHHHH
Confidence 999742 111246677788999999873 4 355774 35667788888 8999999999998999999999999999
Q ss_pred HHHHH
Q 004944 482 TAKMA 486 (722)
Q Consensus 482 A~~Il 486 (722)
|++|+
T Consensus 449 A~~v~ 453 (453)
T TIGR02731 449 AQAIV 453 (453)
T ss_pred HHHhC
Confidence 99873
No 19
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=100.00 E-value=2e-32 Score=299.61 Aligned_cols=404 Identities=20% Similarity=0.243 Sum_probs=277.1
Q ss_pred CcEEEECccHHHHHHHHHHHHCC--CcEEEEecCCCcceeeeeeecCCCCCCCcceEeeccceEEcCCCCcHHHHHHHHh
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLG--FRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQL 125 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G--~~V~VLEa~~r~GGr~~T~~~~g~~gn~~~~~~D~Ga~~~~~~~~~~l~~L~~eL 125 (722)
++|+|||||||||+|||+|+|++ .+|+|||+++++||.++|+..+|+ .+|.|+|.|... ...+..++++|
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~-------~~e~G~~~f~~~-~~~~l~li~eL 72 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGF-------LFERGPHHFLAR-KEEILDLIKEL 72 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCE-------EEeechhheecc-hHHHHHHHHHh
Confidence 36999999999999999999999 999999999999999999998887 999999988766 35567799999
Q ss_pred CCCeeeec--CCcceEecCCcccChhhhHHHHH---HHHHHHHHHHHHHHHh----hccccCCCHHHHHHHHHHHhccCC
Q 004944 126 GSLLHKVR--DKCPLYRLDGNSVDPEIDMKVEA---DFNRLLDKASRLRQLM----GEVAMDVSLGSALETFWRVYWDSG 196 (722)
Q Consensus 126 Gl~~~~~~--~~~~~~~~~G~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~----~~~~~~~s~~~~l~~~~~~~~~~~ 196 (722)
|++..... ....+++.+|+..+.+....... ...........+.+.. .....+.++++|++. .+++.
T Consensus 73 Gled~l~~~~~~~~~i~~~gkl~p~P~~~i~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~d~sv~~f~r~---~fG~e- 148 (444)
T COG1232 73 GLEDKLLWNSTARKYIYYDGKLHPIPTPTILGIPLLLLSSEAGLARALQEFIRPKSWEPKQDISVGEFIRR---RFGEE- 148 (444)
T ss_pred CcHHhhccCCcccceEeeCCcEEECCccceeecCCccccchhHHHHHHHhhhcccCCCCCCCcCHHHHHHH---HHhHH-
Confidence 99877662 34557888888876654331100 0000111111111111 233678888888753 22211
Q ss_pred CHHHHHHHHHHHHhhhhccchhhHHHHH----------------HhhccCCCCC--CCCCeeeeCCChHHHHHHHHHcCC
Q 004944 197 NAEAMNLFNWHLANLEYANASLLSKLSL----------------AFWDQDDPYD--MGGDHCFLPGGNGRLVQALVENVP 258 (722)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~----------------~~~~~~~~~~--~~g~~~~~~gG~~~L~~aLa~~l~ 258 (722)
....++.+++......+...++.... .......+.. ..+.+.+++||+++|+++|++.++
T Consensus 149 --v~~~~~~pll~giy~~~~~~LS~~~~~p~~~~~e~~~~s~~~g~~~~~~~~~~~~~~~~~~~~gG~~~l~~al~~~l~ 226 (444)
T COG1232 149 --VVERFIEPLLEGIYAGDADKLSAAAAFPILARAERKYGSLLRGAKKEGLPKQSLKKEKFGYLRGGLQSLIEALAEKLE 226 (444)
T ss_pred --HHHHHHHHHhhchhcCCHHHhhHHHhcchhhhhhhhhcchhhhhhhccCcccccccccccccCccHHHHHHHHHHHhh
Confidence 11223444444333333332222100 0000000000 123467789999999999999775
Q ss_pred --cccCceEEEEEecCCcEEEEE-CCEEEEeCEEEEcCChhhhhcCCcccCCCCCHHHHHHHHhcCCCceeEEEEEcCCC
Q 004944 259 --ILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYV 335 (722)
Q Consensus 259 --I~ln~~V~~I~~~~~~v~V~~-~G~~~~AD~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ai~~l~~~~~~kV~l~f~~~ 335 (722)
|+++++|+.|..+..++.++. +|++++||.||+|+|+..+.+ +.++ ....+.+.++.+.++..|.+.|+.+
T Consensus 227 ~~i~~~~~V~~i~~~~~~~~~~~~~g~~~~~D~VI~t~p~~~l~~----ll~~--~~~~~~~~~~~~~s~~~vv~~~~~~ 300 (444)
T COG1232 227 AKIRTGTEVTKIDKKGAGKTIVDVGGEKITADGVISTAPLPELAR----LLGD--EAVSKAAKELQYTSVVTVVVGLDEK 300 (444)
T ss_pred hceeecceeeEEEEcCCccEEEEcCCceEEcceEEEcCCHHHHHH----HcCC--cchhhhhhhccccceEEEEEEeccc
Confidence 789999999999977777666 889999999999999999986 4454 2346788999999999999998775
Q ss_pred cccCCCCCceeeecCCCCCcceEE-----EeeccccCCCcEEEEEecchhhhhhcCCCHHHHHHHHHHHHHhhcCCCCCC
Q 004944 336 FWETDLDTFGHLTDDSSSRGEFFL-----FYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGIN 410 (722)
Q Consensus 336 ~w~~~~~~~g~l~~~~~~~~~~~~-----~~~~~~p~g~~vl~~~v~g~~a~~~~~ls~eel~~~vl~~L~~i~~~~~~~ 410 (722)
--....+.+|.++.++... ...+ +++...|.|..++.+++.....+....++|||+++.++++|.++++..
T Consensus 301 ~~~~~~~~~g~~iad~~~~-~~a~~~~S~~~p~~~p~g~~ll~~~~~~~g~~~~~~~~dee~~~~~l~~L~~~~~~~--- 376 (444)
T COG1232 301 DNPALPDGYGLLIADDDPY-ILAITFHSNKWPHEAPEGKTLLRVEFGGPGDESVSTMSDEELVAAVLDDLKKLGGIN--- 376 (444)
T ss_pred cccCCCCceEEEEecCCCc-ceeEEEecccCCCCCCCCcEEEEEEeecCCCcchhccCHHHHHHHHHHHHHHHcCcC---
Confidence 3233456778887766543 1112 334445667888888888776666677889999999999999999754
Q ss_pred CCCCceEEEecCCCCCCCCcccCCCCCCCCCccHHHHhcccCC--CcEEEcccccccccCccchHHHHHHHHHHHHHH
Q 004944 411 VPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGD--GRLFFAGEATIRRYPATMHGAFLSGLRETAKMA 486 (722)
Q Consensus 411 v~~p~~~~~~rW~~~p~~~G~y~~~~pG~~~~~~~~l~~pv~~--~~L~fAGd~ts~~~~g~~eGAi~SG~~AA~~Il 486 (722)
.+|.+..+.||.. ++..+.+|... ....++..+.. ++|+++|.|..+ =++.+++.+|..||++++
T Consensus 377 -~~~~~~~v~r~~~------~~PqY~vG~~~-~~~~ir~~l~~~y~gi~~~G~~~~g---~g~~d~I~~g~~aa~~l~ 443 (444)
T COG1232 377 -GDPVFVEVTRWKY------AMPQYEVGHLD-RLEPIRAALKGAYPGIKSVGRYGEG---VGLPDCIAAGKEAAEQLL 443 (444)
T ss_pred -cchhheeeeeccc------cCCccchhHHH-HHHHHHHhhccccCCeEEeccCCCC---CCchHHHHHHHHHHHHhh
Confidence 3555788888854 55555566542 22233333322 799999999974 279999999999999886
No 20
>PRK07208 hypothetical protein; Provisional
Probab=100.00 E-value=2.6e-30 Score=293.65 Aligned_cols=410 Identities=18% Similarity=0.198 Sum_probs=250.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeeeeeecCCCCCCCcceEeeccceEEcCCCCcHHHHHHHHh
Q 004944 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQL 125 (722)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~T~~~~g~~gn~~~~~~D~Ga~~~~~~~~~~l~~L~~eL 125 (722)
+++||+|||||+|||+||++|+++|++|+|||+++++||+++|....|. .+|+|+|++...+ ..+..+++++
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~~~g~-------~~d~G~h~~~~~~-~~~~~l~~~l 74 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTYKGN-------RFDIGGHRFFSKS-PEVMDLWNEI 74 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeeccCCc-------eEccCCceeccCC-HHHHHHHHHh
Confidence 3589999999999999999999999999999999999999999987765 9999999988665 4467799999
Q ss_pred CCCeee-ecCCcceEecCCcccChhhhH--HHHH-HHHHHHHHHH-HHHHHhhccccCCCHHHHHHHHHHHhccCCCHHH
Q 004944 126 GSLLHK-VRDKCPLYRLDGNSVDPEIDM--KVEA-DFNRLLDKAS-RLRQLMGEVAMDVSLGSALETFWRVYWDSGNAEA 200 (722)
Q Consensus 126 Gl~~~~-~~~~~~~~~~~G~~~~~~~~~--~~~~-~~~~ll~~~~-~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~ 200 (722)
+..... .......++++|.....+... .+.. .+...+.... .+........++.++++|++.. ++ ....
T Consensus 75 ~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~l~~~---~g---~~~~ 148 (479)
T PRK07208 75 LPDDDFLLRPRLSRIYYRGKFFDYPLKAFDALKNLGLWRTAKCGASYLKARLRPRKEEDSFEDWVINR---FG---RRLY 148 (479)
T ss_pred cCCCccccccccceEEECCEEecCCcchhHHHHhCCHhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHh---hC---HHHH
Confidence 863222 223334455577665544321 1100 0001111111 1111111123568888887631 11 1122
Q ss_pred HHHHHHHHHhhhhccchhhHH--------------HHHHhhccC---------CCCCCCCCeeeeCCChHHHHHHHHH--
Q 004944 201 MNLFNWHLANLEYANASLLSK--------------LSLAFWDQD---------DPYDMGGDHCFLPGGNGRLVQALVE-- 255 (722)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~l~~--------------l~~~~~~~~---------~~~~~~g~~~~~~gG~~~L~~aLa~-- 255 (722)
..++.++...........++. .....+... ........+.+++||++.|+++|++
T Consensus 149 ~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gG~~~l~~~L~~~l 228 (479)
T PRK07208 149 STFFKGYTEKVWGVPCDEISADWAAQRIKGLSLGKAIRNALRRSLGLKRRNKEVETSLIEEFRYPKLGPGQLWETAAEKL 228 (479)
T ss_pred HHHHHHhhhhhhCCChHHCCChHHhCcccCCCHHHHHHHHhhhcccccccCCCccccceeEEeCCCCCcchHHHHHHHHH
Confidence 223333322221111111110 000011100 0000112456778999999999976
Q ss_pred ---cCCcccCceEEEEEecCCcEE--EEE---CC--EEEEeCEEEEcCChhhhhcCCcccCCCCCHHHHHHHHhcCCCce
Q 004944 256 ---NVPILYEKTVHTIRYGSDGVQ--VLA---GS--QVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLL 325 (722)
Q Consensus 256 ---~l~I~ln~~V~~I~~~~~~v~--V~~---~G--~~~~AD~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ai~~l~~~~~ 325 (722)
+.+|++|++|++|..+++++. ++. +| .++.||+||+|+|+..+.. . +.|.+|+...++++++++.++
T Consensus 229 ~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l~~-~--l~~~~~~~~~~~~~~l~~~~~ 305 (479)
T PRK07208 229 EALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLRELVA-A--LDPPPPPEVRAAAAGLRYRDF 305 (479)
T ss_pred HHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHHHHHH-h--cCCCCCHHHHHHHhCCCccee
Confidence 456999999999999887642 222 24 3688999999999998875 2 335688888888999999999
Q ss_pred eEEEEEcCCCcccCCCCCceeeecCCCCCcce--EEEe-eccccCCCc-EEE-EEecchhhhhhcCCCHHHHHHHHHHHH
Q 004944 326 NKVAMLFPYVFWETDLDTFGHLTDDSSSRGEF--FLFY-SYATVAGGP-LLI-ALVAGEAAHKFESMPPTDAVTKVLQIL 400 (722)
Q Consensus 326 ~kV~l~f~~~~w~~~~~~~g~l~~~~~~~~~~--~~~~-~~~~p~g~~-vl~-~~v~g~~a~~~~~ls~eel~~~vl~~L 400 (722)
.+|++.|+++.+... .+.++.+.....+.. +..+ +...|++.. .+. .+.... ......++++++++.++++|
T Consensus 306 ~~v~l~~~~~~~~~~--~~~~~~~~~~~~~r~~~~~~~~~~~~p~g~~~~l~~~~~~~~-~~~~~~~~deel~~~~~~~L 382 (479)
T PRK07208 306 ITVGLLVKELNLFPD--NWIYIHDPDVKVGRLQNFNNWSPYLVPDGRDTWLGLEYFCFE-GDDLWNMSDEDLIALAIQEL 382 (479)
T ss_pred EEEEEEecCCCCCCC--ceEEecCCCCccceecccccCCcccCCCCCceEEEEEEEccC-CCccccCCHHHHHHHHHHHH
Confidence 999999998754322 122222211111111 1111 222355553 222 232222 22345789999999999999
Q ss_pred HhhcCCCCCCCCCCceEEEecCCCCCCCCcccCCCCCCCCCccHHH---HhcccCCCcEEEcccccccccCccchHHHHH
Q 004944 401 KGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDI---MAESVGDGRLFFAGEATIRRYPATMHGAFLS 477 (722)
Q Consensus 401 ~~i~~~~~~~v~~p~~~~~~rW~~~p~~~G~y~~~~pG~~~~~~~~---l~~pv~~~~L~fAGd~ts~~~~g~~eGAi~S 477 (722)
.++ +.. .-..+....+.+|.. +|..+.+|... ..+. +.++. +|||+||++....| .+|++|+.|
T Consensus 383 ~~l-~~~--~~~~~~~~~v~r~~~------a~P~y~~~~~~-~~~~~~~~~~~~--~~l~laGr~~~~~~-~~~d~a~~s 449 (479)
T PRK07208 383 ARL-GLI--RPADVEDGFVVRVPK------AYPVYDGTYER-NVEIIRDLLDHF--PNLHLVGRNGMHRY-NNQDHSMLT 449 (479)
T ss_pred HHc-CCC--ChhheeEEEEEEecC------cccCCCchHHH-HHHHHHHHHHhc--CCceeecccccccc-CChhHHHHH
Confidence 997 321 123566777788843 44444444321 1111 33555 89999999877654 599999999
Q ss_pred HHHHHHHHHHH
Q 004944 478 GLRETAKMAHC 488 (722)
Q Consensus 478 G~~AA~~Il~~ 488 (722)
|.+||++|++.
T Consensus 450 g~~~a~~i~~~ 460 (479)
T PRK07208 450 AMLAVENIIAG 460 (479)
T ss_pred HHHHHHHHhcC
Confidence 99999998875
No 21
>PLN02487 zeta-carotene desaturase
Probab=99.98 E-value=9.6e-30 Score=289.82 Aligned_cols=411 Identities=20% Similarity=0.259 Sum_probs=253.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeeeeeec-CCCCCCCcceEeeccceEEcCCCCcHHHHHHHH
Q 004944 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKM-EGGAGNRISASADLGGSVLTGTLGNPLGILAKQ 124 (722)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~T~~~-~g~~gn~~~~~~D~Ga~~~~~~~~~~l~~L~~e 124 (722)
++++|+|||||++||+||+.|+++|++|+|+|+++++||++.|+.. .|. .+|.|.|++.+.+.+ +..++++
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~-------~~e~G~h~~~~~~~~-~~~ll~~ 145 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGN-------HIEMGLHVFFGCYNN-LFRLMKK 145 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCc-------EEecceeEecCCcHH-HHHHHHh
Confidence 3469999999999999999999999999999999999999999964 344 899999999988754 6679999
Q ss_pred hCCCeeeecC-Ccc-eEecCCccc----ChhhhHHHHHHHHHH-----HHHHHHHHHH------------hh--------
Q 004944 125 LGSLLHKVRD-KCP-LYRLDGNSV----DPEIDMKVEADFNRL-----LDKASRLRQL------------MG-------- 173 (722)
Q Consensus 125 LGl~~~~~~~-~~~-~~~~~G~~~----~~~~~~~~~~~~~~l-----l~~~~~~~~~------------~~-------- 173 (722)
+|+....... ... ++..+|... ..+....+ ..+..+ +....+++.. ..
T Consensus 146 LGl~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~pl-~~~~~~l~~~~Ls~~dklr~~~~l~~~~~~~al~~~~~~~~~~ 224 (569)
T PLN02487 146 VGADENLLVKDHTHTFVNKGGDVGELDFRFPVGAPL-HGIKAFLTTNQLEPYDKARNALALATSPVVRALVDPDGAMRDI 224 (569)
T ss_pred cCCcccccccccceeEEecCCEEeeeccCCCCCchh-hhHHHHHcCCCCCHHHHHhhcccccccchhhhccCcccccccc
Confidence 9997553322 122 223344331 11111110 000011 1111111110 00
Q ss_pred ccccCCCHHHHHHHHHHHhccCCCH-HHHHHHHHHHHhhhhccchhhHHHHH-HhhccCCCCCCCCCeeeeCCChHH-HH
Q 004944 174 EVAMDVSLGSALETFWRVYWDSGNA-EAMNLFNWHLANLEYANASLLSKLSL-AFWDQDDPYDMGGDHCFLPGGNGR-LV 250 (722)
Q Consensus 174 ~~~~~~s~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~~~~~~~~~g~~~~~~gG~~~-L~ 250 (722)
...++.++.+++... ..++ ....++++.+........+.++...+ ..+........++...+++||++. |+
T Consensus 225 ~~~d~~sv~~~l~r~------~g~~~~~~~l~dPll~~~~~~~~d~~SA~~~~~vl~~~~~~~~~~~l~~~~Gg~~~~l~ 298 (569)
T PLN02487 225 RDLDDISFSDWFTSH------GGTRMSIKRMWDPIAYALGFIDCDNISARCMLTIFSLFATKTEASLLRMLKGSPDVRLS 298 (569)
T ss_pred ccccCCcHHHHHHHh------CCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhcCCcceeeecCCCchHHHH
Confidence 013456777666432 1223 33445555554444444433332211 111110001122356788999995 88
Q ss_pred HHHHH-----cCCcccCceEEEEEecC--Cc---E-EEEE----CCEEEEeCEEEEcCChhhhhcCCcccCCCCCHH--H
Q 004944 251 QALVE-----NVPILYEKTVHTIRYGS--DG---V-QVLA----GSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQR--K 313 (722)
Q Consensus 251 ~aLa~-----~l~I~ln~~V~~I~~~~--~~---v-~V~~----~G~~~~AD~VI~AvP~~~l~~~~i~~~p~Lp~~--~ 313 (722)
+.+++ |.+|+++++|++|..++ ++ + .|++ +++++.||.||+|+|+..+++ +.|+.+.. .
T Consensus 299 ~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~----Llp~~~~~~~~ 374 (569)
T PLN02487 299 GPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIKR----LLPEQWREYEF 374 (569)
T ss_pred HHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHHH----hCCchhhccHH
Confidence 88765 56799999999999873 32 2 2333 345789999999999998886 44554222 2
Q ss_pred HHHHHhcCCCceeEEEEEcCCCcccCCC--------CCce--eeecCCCCCcceEEEee--------ccccCCCcEEEEE
Q 004944 314 LDAIKRLGYGLLNKVAMLFPYVFWETDL--------DTFG--HLTDDSSSRGEFFLFYS--------YATVAGGPLLIAL 375 (722)
Q Consensus 314 ~~ai~~l~~~~~~kV~l~f~~~~w~~~~--------~~~g--~l~~~~~~~~~~~~~~~--------~~~p~g~~vl~~~ 375 (722)
...+.++.+.+++.|++.|+++.-.... ...| .+... ....+..+.+ +.....+..+.++
T Consensus 375 ~~~l~~L~~~pi~tv~L~~d~~v~~~~~~~~~r~l~~~~g~~~~~~~--~~~~~~f~~di~l~~~~~~~~~~~g~~l~~v 452 (569)
T PLN02487 375 FDNIYKLVGVPVVTVQLRYNGWVTEMQDLELSRQLRRAAGLDNLLYS--ADADFSCFADLALTSPEDYYKEGEGSLIQAV 452 (569)
T ss_pred HhHHhcCCCeeEEEEEEEecccccccccccccccccccccccccccc--cCCCcceEeeeecCCHHHHcccCCceEEEEE
Confidence 5677888889999999999875432110 0011 11100 0111111111 1011223566666
Q ss_pred ecchhhhhhcCCCHHHHHHHHHHHHHhhcCCCCCCCCCCceEEEecCCCCCCCCcccCCCCCCCCCccHHHHhcccCCCc
Q 004944 376 VAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGR 455 (722)
Q Consensus 376 v~g~~a~~~~~ls~eel~~~vl~~L~~i~~~~~~~v~~p~~~~~~rW~~~p~~~G~y~~~~pG~~~~~~~~l~~pv~~~~ 455 (722)
+.. ++.+..++++++++.++++|.++||... . ..+....+.+.... .| ...||+. ..+|...+|+ +|
T Consensus 453 is~--a~~~~~~~~~ei~~~~~~~L~~~~p~~~-~-~~v~~~~vv~~~~a-----t~-~~~pg~~-~~RP~~~T~~--~n 519 (569)
T PLN02487 453 LTP--GDPYMPLSNDKIVEKVHKQVLELFPSSR-G-LEVTWSSVVKIGQS-----LY-REAPGMD-PFRPDQKTPI--SN 519 (569)
T ss_pred EcC--CccccCCCHHHHHHHHHHHHHHhCcccc-c-CceEEEEEEEccCc-----ee-ccCCCcc-ccCCCCCCCC--CC
Confidence 653 3567889999999999999999997531 1 13444445555442 22 3446653 3446678888 89
Q ss_pred EEEcccccccccCccchHHHHHHHHHHHHHHHHHh
Q 004944 456 LFFAGEATIRRYPATMHGAFLSGLRETAKMAHCAN 490 (722)
Q Consensus 456 L~fAGd~ts~~~~g~~eGAi~SG~~AA~~Il~~l~ 490 (722)
||+||||+..+|+++||||++||.+||+.|++...
T Consensus 520 l~LAGD~t~~~yPat~EgAv~SG~~AA~~i~~~~~ 554 (569)
T PLN02487 520 FFLAGSYTKQDYIDSMEGATLSGRQAAAYICEAGE 554 (569)
T ss_pred EEEeCcccccCCcchHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999998763
No 22
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.97 E-value=1.3e-29 Score=282.29 Aligned_cols=388 Identities=20% Similarity=0.234 Sum_probs=240.1
Q ss_pred HHHHHHHHCCCcEEEEecCCCcceeeeeeecCCCCCCCcceEeeccceEEcCCCCcHHHHHHHHhCCCeeeecC--Ccce
Q 004944 61 AAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLGSLLHKVRD--KCPL 138 (722)
Q Consensus 61 sAA~~Lak~G~~V~VLEa~~r~GGr~~T~~~~g~~gn~~~~~~D~Ga~~~~~~~~~~l~~L~~eLGl~~~~~~~--~~~~ 138 (722)
+||++|+++|++|+|||+++++||++.|.+.+++ +..+|.|+|++.+.+.+ +..++++||+....... ...+
T Consensus 1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~~~g~-----~~~~d~G~~~~~~~~~~-~~~l~~~lgl~~~~~~~~~~~~~ 74 (419)
T TIGR03467 1 SAAVELARAGARVTLFEARPRLGGRARSFEDGGL-----GQTIDNGQHVLLGAYTN-LLALLRRIGAEPRLQGPRLPLPF 74 (419)
T ss_pred ChHHHHHhCCCceEEEecCCCCCCceeEeecCCC-----CcceecCCEEEEcccHH-HHHHHHHhCCchhhhcccCCcce
Confidence 5899999999999999999999999999998764 23699999999877654 67799999987653311 1122
Q ss_pred EecCCcc-------cChhhhH--HHH-------HHHHHHHHHHHHHHHHhhccccCCCHHHHHHHHHHHhccCCCHHHHH
Q 004944 139 YRLDGNS-------VDPEIDM--KVE-------ADFNRLLDKASRLRQLMGEVAMDVSLGSALETFWRVYWDSGNAEAMN 202 (722)
Q Consensus 139 ~~~~G~~-------~~~~~~~--~~~-------~~~~~ll~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~ 202 (722)
+..++.. ++.+... ... .....+......+........++.++.++++.. ...+...+
T Consensus 75 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~------~~~~~~~~ 148 (419)
T TIGR03467 75 YDPGGRLSRLRLSRLPAPLHLARGLLRAPGLSWADKLALARALLALRRTRFRALDDTTVGDWLQAA------GQSERLIE 148 (419)
T ss_pred ecCCCCceeecCCCCCCCHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhcCccccCCCCHHHHHHHc------CCCHHHHH
Confidence 2223321 1111110 000 000011111111111111124567777776532 12333333
Q ss_pred -HHHHHHHhhhhccchhhHHHHHH-hhcc-CCCCCCCCCeeeeCCChHHHHHH-HHH-----cCCcccCceEEEEEecCC
Q 004944 203 -LFNWHLANLEYANASLLSKLSLA-FWDQ-DDPYDMGGDHCFLPGGNGRLVQA-LVE-----NVPILYEKTVHTIRYGSD 273 (722)
Q Consensus 203 -~~~~~~~~~~~~~~~~l~~l~~~-~~~~-~~~~~~~g~~~~~~gG~~~L~~a-La~-----~l~I~ln~~V~~I~~~~~ 273 (722)
++.+.+..........++..... .+.. ..........+++++|+++++.. |++ +.+|++|++|++|..+++
T Consensus 149 ~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~l~~~l~~~g~~i~~~~~V~~i~~~~~ 228 (419)
T TIGR03467 149 RLWEPLLLSALNTPPERASAALAAKVLRDSFLAGRAASDLLLPRVPLSELFPEPARRWLDSRGGEVRLGTRVRSIEANAG 228 (419)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCHHHHHHHHHHHHHHHcCCEEEcCCeeeEEEEcCC
Confidence 33443333222222222221111 1100 00011123467888998876544 554 567999999999999988
Q ss_pred cEEEEE--CCEEEEeCEEEEcCChhhhhcCCcccCCCCCHHHHHHHHhcCCCceeEEEEEcCCCcccCCCCCceeeecCC
Q 004944 274 GVQVLA--GSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDTFGHLTDDS 351 (722)
Q Consensus 274 ~v~V~~--~G~~~~AD~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ai~~l~~~~~~kV~l~f~~~~w~~~~~~~g~l~~~~ 351 (722)
+|++.. +|+++.||+||+|+|+.++.. +.|. +.+.+++++++|.+..+|++.|++++|.+. ..++... .+
T Consensus 229 ~~~~~~~~~g~~~~~d~vi~a~p~~~~~~----ll~~--~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~-~~~~~~~-~~ 300 (419)
T TIGR03467 229 GIRALVLSGGETLPADAVVLAVPPRHAAS----LLPG--EDLGALLTALGYSPITTVHLRLDRAVRLPA-PMVGLVG-GL 300 (419)
T ss_pred cceEEEecCCccccCCEEEEcCCHHHHHH----hCCC--chHHHHHhhcCCcceEEEEEEeCCCcCCCC-CeeeecC-Cc
Confidence 866543 678899999999999999986 3333 246678899999999999999999998532 2333321 11
Q ss_pred CCCcceEEEeecccc-CCCcEEEEEecchhhhhhcCCCHHHHHHHHHHHHHhhcCCCCCCCCCCceEEEecCCCCCCCCc
Q 004944 352 SSRGEFFLFYSYATV-AGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLG 430 (722)
Q Consensus 352 ~~~~~~~~~~~~~~p-~g~~vl~~~v~g~~a~~~~~ls~eel~~~vl~~L~~i~~~~~~~v~~p~~~~~~rW~~~p~~~G 430 (722)
..+.++.... +...++..++.+ +..+..++++++++.++++|.++||.. .-..+....+.+|...
T Consensus 301 -----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~e~~~~~~l~~l~~~~~~~--~~~~~~~~~~~~~~~~----- 366 (419)
T TIGR03467 301 -----AQWLFDRGQLAGEPGYLAVVISA--ARDLVDLPREELADRIVAELRRAFPRV--AGAKPLWARVIKEKRA----- 366 (419)
T ss_pred -----eeEEEECCcCCCCCCEEEEEEec--chhhccCCHHHHHHHHHHHHHHhcCcc--ccCCccceEEEEccCC-----
Confidence 1122222222 222455555543 456778899999999999999999742 1124555566677543
Q ss_pred ccCCCCCCCCCccHHHHhcccCCCcEEEcccccccccCccchHHHHHHHHHHHHHH
Q 004944 431 SYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFLSGLRETAKMA 486 (722)
Q Consensus 431 ~y~~~~pG~~~~~~~~l~~pv~~~~L~fAGd~ts~~~~g~~eGAi~SG~~AA~~Il 486 (722)
.|. ..||.. ..++.+.+|+ ++||||||+++++|+++||||+.||.+||++|+
T Consensus 367 ~~~-~~~g~~-~~~~~~~~~~--~~l~~aGd~~~~~~~~~~egA~~SG~~aA~~i~ 418 (419)
T TIGR03467 367 TFA-ATPGLN-RLRPGARTPW--PNLFLAGDWTATGWPATMEGAVRSGYQAAEAVL 418 (419)
T ss_pred ccc-cCCccc-ccCCCCCCCc--CCEEEecccccCCCcchHHHHHHHHHHHHHHHh
Confidence 222 224432 2344456776 899999999998888999999999999999986
No 23
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=99.97 E-value=7.5e-30 Score=288.22 Aligned_cols=403 Identities=18% Similarity=0.246 Sum_probs=238.9
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeeeeee-cCCCCCCCcceEeeccceEEcCCCCcHHHHHHHHhCC
Q 004944 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKK-MEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLGS 127 (722)
Q Consensus 49 dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~T~~-~~g~~gn~~~~~~D~Ga~~~~~~~~~~l~~L~~eLGl 127 (722)
+|+|||||++||+||++|+++|++|+|||+++++||+++|+. ..|+ .+|.|.|++.+.+.+ +..+++++|+
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~-------~~d~G~~~~~~~~~~-~~~~~~~lg~ 72 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGN-------HIEMGLHVFFGCYAN-LFRLMKKVGA 72 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCc-------eEeeceEEecCchHH-HHHHHHHcCC
Confidence 589999999999999999999999999999999999999985 3444 899999999987754 6779999998
Q ss_pred CeeeecCC-cceEe-cCCccc--------ChhhhHHHHHHH-H---HHHHHHHHHHHH-----hh------------ccc
Q 004944 128 LLHKVRDK-CPLYR-LDGNSV--------DPEIDMKVEADF-N---RLLDKASRLRQL-----MG------------EVA 176 (722)
Q Consensus 128 ~~~~~~~~-~~~~~-~~G~~~--------~~~~~~~~~~~~-~---~ll~~~~~~~~~-----~~------------~~~ 176 (722)
........ ...+. .++... ..+..... ..+ . .+.+++...... .. ...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~-~~l~~~~ls~~dklr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (474)
T TIGR02732 73 EDNLLLKEHTHTFVNKGGDIGELDFRFATGAPFNGLK-AFFTTSQLKWVDKLRNALALGTSPIVRGLVDYDGAMKTIRDL 151 (474)
T ss_pred ccccccccceeEEEcCCCcccccccCCCCCCchhhhH-HHhcCCCCCHHHHHHHHHHhhhhHHHhhccccchhhhhhhhh
Confidence 75433221 12122 223221 11111000 000 0 011111100000 00 012
Q ss_pred cCCCHHHHHHHHHHHhccCCCHH-HHHHHHHHHHhhhhccchhhHHHHH----HhhccCCCCCCCCCeeeeCCChHH---
Q 004944 177 MDVSLGSALETFWRVYWDSGNAE-AMNLFNWHLANLEYANASLLSKLSL----AFWDQDDPYDMGGDHCFLPGGNGR--- 248 (722)
Q Consensus 177 ~~~s~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~----~~~~~~~~~~~~g~~~~~~gG~~~--- 248 (722)
++.++.++++.. ..++. ...++.+.+..........++.... ..+.. ...+....+++||.+.
T Consensus 152 ~~~t~~~~l~~~------~~~~~~~~~~~~Pll~~~~~~~~~~~Sa~~~~~~~~~~~~---~~~~s~~~~~~g~~~~~l~ 222 (474)
T TIGR02732 152 DKISFAEWFLSH------GGSLGSIKRMWDPIAYALGFIDCENISARCMLTIFMLFAA---KTEASKLRMLKGSPDKYLT 222 (474)
T ss_pred ccccHHHHHHHc------CCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh---CCCcceeeeecCCcchhHH
Confidence 446666665432 12322 4445555555544444433332211 11111 1222344566666544
Q ss_pred --HHHHHHH-cCCcccCceEEEEEecC--Cc---EE-EEE-CC---EEEEeCEEEEcCChhhhhcCCcccCCCCC--HHH
Q 004944 249 --LVQALVE-NVPILYEKTVHTIRYGS--DG---VQ-VLA-GS---QVFEGDMVLCTVPLGVLKSGSIKFIPELP--QRK 313 (722)
Q Consensus 249 --L~~aLa~-~l~I~ln~~V~~I~~~~--~~---v~-V~~-~G---~~~~AD~VI~AvP~~~l~~~~i~~~p~Lp--~~~ 313 (722)
+++.|.+ |.+|+++++|++|..++ ++ ++ |.. +| +++.||+||+|+|+..+.+ +.|+++ ...
T Consensus 223 ~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~----Ll~~~~~~~~~ 298 (474)
T TIGR02732 223 KPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKR----LLPQEWRQFEE 298 (474)
T ss_pred HHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHh----hCChhhhcCHH
Confidence 5555654 66799999999999864 22 32 223 33 5689999999999999886 344432 124
Q ss_pred HHHHHhcCCCceeEEEEEcCCCcccCCCC-------Cceeeec-CCCCCcceEEEee-----c--cccCCC-cEEEEEec
Q 004944 314 LDAIKRLGYGLLNKVAMLFPYVFWETDLD-------TFGHLTD-DSSSRGEFFLFYS-----Y--ATVAGG-PLLIALVA 377 (722)
Q Consensus 314 ~~ai~~l~~~~~~kV~l~f~~~~w~~~~~-------~~g~l~~-~~~~~~~~~~~~~-----~--~~p~g~-~vl~~~v~ 377 (722)
...+.++++.++..|++.|+++.-..... ....+.. -......+..+.+ . ..+++. .++.+++.
T Consensus 299 ~~~l~~l~~~pi~~v~l~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (474)
T TIGR02732 299 FDNIYKLDAVPVATVQLRYDGWVTELQDLAKRKQLKRAAGLDNLLYTADADFSCFADLALTSPDDYYKEGQGSLLQCVLT 378 (474)
T ss_pred HhhHhcCCCCCeEEEEEEeccccccccchhhhhcccccccccccccccCccceeeehhhccCHHHHhccCCCeEEEEEEe
Confidence 56788899999999999998744221100 0000000 0000001111111 1 112233 33555554
Q ss_pred chhhhhhcCCCHHHHHHHHHHHHHhhcCCCCCCCCCCceEEEecCCCCCCCCcccCCCCCCCCCccHHHHhcccCCCcEE
Q 004944 378 GEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLF 457 (722)
Q Consensus 378 g~~a~~~~~ls~eel~~~vl~~L~~i~~~~~~~v~~p~~~~~~rW~~~p~~~G~y~~~~pG~~~~~~~~l~~pv~~~~L~ 457 (722)
. +..+.+++++++++.++++|+++||.. .-..+.+..+.+....-| ...||.. ..++...+|+ +|||
T Consensus 379 ~--~~~~~~~~~~~l~~~~~~~L~~~~p~~--~~~~~~~~~v~~~~~a~~------~~~pg~~-~~~P~~~t~~--~~l~ 445 (474)
T TIGR02732 379 P--GDPWMPESNEEIAKRVDKQVRALFPSS--KNLKLTWSSVVKLAQSLY------REAPGMD-PFRPDQKTPI--SNFF 445 (474)
T ss_pred C--hhhhcCCCHHHHHHHHHHHHHHhCccc--cCCceeEEEEEEecCcee------ccCCCCc-ccCCCCCCCC--CCeE
Confidence 3 246778999999999999999999842 112344444445544222 2345553 3345567777 8999
Q ss_pred EcccccccccCccchHHHHHHHHHHHHHH
Q 004944 458 FAGEATIRRYPATMHGAFLSGLRETAKMA 486 (722)
Q Consensus 458 fAGd~ts~~~~g~~eGAi~SG~~AA~~Il 486 (722)
+||||+..+|+++||||++||.+||+.|+
T Consensus 446 lAGD~t~~~~pas~egAv~sG~~aA~~i~ 474 (474)
T TIGR02732 446 LAGSYTQQDYIDSMEGATLSGRQAAAAIL 474 (474)
T ss_pred EeccccccCchHHHhHHHHHHHHHHHHhC
Confidence 99999999999999999999999999874
No 24
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.97 E-value=8.2e-28 Score=274.05 Aligned_cols=417 Identities=21% Similarity=0.185 Sum_probs=232.8
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeeeeeecCCCCCCCcceEeeccceEEcCCC-CcHHHHHHHHhC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTL-GNPLGILAKQLG 126 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~T~~~~g~~gn~~~~~~D~Ga~~~~~~~-~~~l~~L~~eLG 126 (722)
.||||||||++||+||.+|+++|++|+|||+++++||++.|++.+|+ .+|.|+|++.+.. ...+..+++++|
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~~G~-------~fD~G~~~~~~~~~~~~~~~~~~~lg 74 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRRRGF-------TFDVGATQVAGLEPGGIHARIFRELG 74 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceeccCCE-------EEeecceEEEecCcCCHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999998776 9999999997642 355677889999
Q ss_pred CCeee---ecCCcceEecCC-cccChhhhHH-----HHHHHH---HHHHHHHHHHHH----hhccc--cCCCHHHHH---
Q 004944 127 SLLHK---VRDKCPLYRLDG-NSVDPEIDMK-----VEADFN---RLLDKASRLRQL----MGEVA--MDVSLGSAL--- 185 (722)
Q Consensus 127 l~~~~---~~~~~~~~~~~G-~~~~~~~~~~-----~~~~~~---~ll~~~~~~~~~----~~~~~--~~~s~~~~l--- 185 (722)
+.... .+....++..+| ..+....+.. +...+. .++....+.... +.... ...+..++.
T Consensus 75 ~~~~~~~~~d~~~~~~~~dg~~~~~~~~d~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (492)
T TIGR02733 75 IPLPEAKILDPACAVDLPDGSEPIPLWHDPDRWQKERERQFPGSERFWQLCSQLHQSNWRFAGRDPVLPPRNYWDLLQLV 154 (492)
T ss_pred CCCcccccCCCCcEEEECCCceEeeeecCHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHH
Confidence 87432 223334555666 2332211110 111110 111111111110 00000 000111111
Q ss_pred ---------------HHHHHHhcc---CCCHHHHHHHHHHHHhhhhccchhhHHHHHHhhccCCCCCCCCCeeeeCCChH
Q 004944 186 ---------------ETFWRVYWD---SGNAEAMNLFNWHLANLEYANASLLSKLSLAFWDQDDPYDMGGDHCFLPGGNG 247 (722)
Q Consensus 186 ---------------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~~~~~~gG~~ 247 (722)
.++.++... ..++..+.++.+...............+........ .....+.++++||++
T Consensus 155 ~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~G~~~~~GG~~ 232 (492)
T TIGR02733 155 SALRPDTLLTGPLSLLTVADLLRLCGLGDDRRLRRFLDLQLKLYSQEDADETAALYGATVLQM--AQAPHGLWHLHGSMQ 232 (492)
T ss_pred HhcChhhhhhhhhhhhhHHHHHHHhCCCccHHHHHHHHHHHhhhccCChhhhhHHHHHHHhhc--cccCCCceeecCcHH
Confidence 111122111 223344444443221111111111111111111110 111123567999999
Q ss_pred HHHHHHHHc-----CCcccCceEEEEEecCCcEE-EEE-CC-----EEEEeCEEEEcCChhhhhcCCcccCCCCCHHHHH
Q 004944 248 RLVQALVEN-----VPILYEKTVHTIRYGSDGVQ-VLA-GS-----QVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLD 315 (722)
Q Consensus 248 ~L~~aLa~~-----l~I~ln~~V~~I~~~~~~v~-V~~-~G-----~~~~AD~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ 315 (722)
+|+++|++. .+|+++++|++|..+++++. |.. ++ +++.||+||+|+|+..+.. .+ ..+.+|+...+
T Consensus 233 ~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~~-ll-~~~~~~~~~~~ 310 (492)
T TIGR02733 233 TLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQSLLE-LL-GPLGLPPGYRK 310 (492)
T ss_pred HHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHHHHHH-hc-CcccCCHHHHH
Confidence 999999874 46999999999999877532 322 43 6899999999999998875 22 23567777788
Q ss_pred HHHhcCCCc-eeEEEEEcCCCcccCCC-CCceeeecCCCCCcceEEEe----eccccCCCcEEEEEecchhh-------h
Q 004944 316 AIKRLGYGL-LNKVAMLFPYVFWETDL-DTFGHLTDDSSSRGEFFLFY----SYATVAGGPLLIALVAGEAA-------H 382 (722)
Q Consensus 316 ai~~l~~~~-~~kV~l~f~~~~w~~~~-~~~g~l~~~~~~~~~~~~~~----~~~~p~g~~vl~~~v~g~~a-------~ 382 (722)
.++++++.+ .+++++.+++.....+. ..+....+. .+.+++.. +..+|+|...+++.+..... .
T Consensus 311 ~~~~~~~s~~~~~v~l~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~d~~~aP~G~~~l~~~~~~~~~~~~~~~~~ 387 (492)
T TIGR02733 311 RLKKLPEPSGAFVFYLGVKRAALPVDCPPHLQFLSDH---QGSLFVSISQEGDGRAPQGEATLIASSFTDTNDWSSLDEE 387 (492)
T ss_pred HHhcCCCCCceEEEEEeecccccCCCCCcceeeccCC---CceEEEEeCCccccCCCCCceEEEEEcCCCHHHHcCCCHH
Confidence 888888876 56888999773211110 111111111 11222211 12356677776555433211 1
Q ss_pred hhcCCCHHHHHHHHHHHHHhhcCCCCCCCCCCceEEEe----cCCCC-CCCCcccCCCC--CCCCCccHHHHhcccCCCc
Q 004944 383 KFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCT----RWGGD-PFSLGSYSNVA--VGASGDDYDIMAESVGDGR 455 (722)
Q Consensus 383 ~~~~ls~eel~~~vl~~L~~i~~~~~~~v~~p~~~~~~----rW~~~-p~~~G~y~~~~--pG~~~~~~~~l~~pv~~~~ 455 (722)
+|... .+++.+.+++.|++.+|.. .+-+..... .|... ....|++-.+. +.+....+....+|+ +|
T Consensus 388 ~y~~~-k~~~~~~il~~le~~~p~l----~~~i~~~~v~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~~~~~~t~i--~g 460 (492)
T TIGR02733 388 DYTAK-KKQYTQTIIERLGHYFDLL----EENWVHVELATPRTFERWTGRPQGIVGGLGQRPSTFGPFGLSSRTPV--KG 460 (492)
T ss_pred HHHHH-HHHHHHHHHHHHHHHCCCc----cccEEEEEccCCchHHHHhCCCCcEECCCCcCccccCCcCCCCCCCC--CC
Confidence 22221 4557788999999888632 121111110 11111 01123221111 222211112225677 89
Q ss_pred EEEcccccccccCccchHHHHHHHHHHHHHHH
Q 004944 456 LFFAGEATIRRYPATMHGAFLSGLRETAKMAH 487 (722)
Q Consensus 456 L~fAGd~ts~~~~g~~eGAi~SG~~AA~~Il~ 487 (722)
|||||++++++ +++.||+.||+.||++|++
T Consensus 461 Lyl~G~~~~pG--~Gv~g~~~sg~~~a~~i~~ 490 (492)
T TIGR02733 461 LWLCGDSIHPG--EGTAGVSYSALMVVRQILA 490 (492)
T ss_pred eEEecCccCCC--CcHHHHHHHHHHHHHHHhh
Confidence 99999999763 5899999999999999985
No 25
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.96 E-value=4.2e-28 Score=277.15 Aligned_cols=413 Identities=19% Similarity=0.137 Sum_probs=227.3
Q ss_pred EEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeeeeeecCCCCCCCcceEeeccceEEcCCCCcHHHHHHHHhCCCe
Q 004944 50 VLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLGSLL 129 (722)
Q Consensus 50 VvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~T~~~~g~~gn~~~~~~D~Ga~~~~~~~~~~l~~L~~eLGl~~ 129 (722)
|||||||++||+||.+|+++|++|+|||+++++||+++|++..|+ .+|.|++++... +.+..+++++|+++
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~~~G~-------~fD~G~~~~~~~--~~~~~l~~~lg~~l 71 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLEDDGF-------RFDTGPTVITMP--EALEELFALAGRDL 71 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEecCCe-------EEecCCeEEccc--cHHHHHHHHcCCCh
Confidence 799999999999999999999999999999999999999998776 999999998743 56777889888542
Q ss_pred ------eeecCCcceEecCCcccChhhhHH------------HHHHHHHHHHHHHHHHH-Hhhcc--ccCCCHHHHHHH-
Q 004944 130 ------HKVRDKCPLYRLDGNSVDPEIDMK------------VEADFNRLLDKASRLRQ-LMGEV--AMDVSLGSALET- 187 (722)
Q Consensus 130 ------~~~~~~~~~~~~~G~~~~~~~~~~------------~~~~~~~ll~~~~~~~~-~~~~~--~~~~s~~~~l~~- 187 (722)
...+....+++.+|..+..+.+.. ....+..+++.+..+.. ..... ....+..+.+..
T Consensus 72 ~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (502)
T TIGR02734 72 ADYVELVPLDPFYRLCWEDGSQLDVDNDQEELEAQIARFNPGDVAGYRRFLDYAERVYREGYRKLGYVPFLSPRDLLRAD 151 (502)
T ss_pred hheEEEEECCCceEEECCCCCEEEecCCHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHhHh
Confidence 222223334455665544332211 11223333333333222 10000 001111111110
Q ss_pred ------------HHHHhcc-CCCHHHHHHHHHHHHhhhhccchhhHHHHHHhhccCCCCCCCCCeeeeCCChHHHHHHHH
Q 004944 188 ------------FWRVYWD-SGNAEAMNLFNWHLANLEYANASLLSKLSLAFWDQDDPYDMGGDHCFLPGGNGRLVQALV 254 (722)
Q Consensus 188 ------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~~~~~~gG~~~L~~aLa 254 (722)
+.++... ..++..+.++.................+....+. ...+..+++.||++.++++|.
T Consensus 152 ~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~g~~p~~~~~~~~l~~~~-----~~~~g~~~~~gG~~~l~~al~ 226 (502)
T TIGR02734 152 LPQLLALLAWRSLYSKVARFFSDERLRQAFSFHALFLGGNPFRTPSIYALISAL-----EREWGVWFPRGGTGALVAAMA 226 (502)
T ss_pred hHhhhhccCcCCHHHHHHhhcCCHHHHHHhcccceeeccCcccchHHHHHHHHH-----HhhceEEEcCCCHHHHHHHHH
Confidence 0000000 1122222222211000000000000111111111 112346678999999999997
Q ss_pred H-----cCCcccCceEEEEEecCCc-EEEEE-CCEEEEeCEEEEcCChhhhhcCCcccCCCC-CHHHHHHHHhcCCC-ce
Q 004944 255 E-----NVPILYEKTVHTIRYGSDG-VQVLA-GSQVFEGDMVLCTVPLGVLKSGSIKFIPEL-PQRKLDAIKRLGYG-LL 325 (722)
Q Consensus 255 ~-----~l~I~ln~~V~~I~~~~~~-v~V~~-~G~~~~AD~VI~AvP~~~l~~~~i~~~p~L-p~~~~~ai~~l~~~-~~ 325 (722)
+ |++|+++++|++|..++++ +.|.+ +|+++.||.||+|+++..+....+ .+.. ++...+.+++++++ +.
T Consensus 227 ~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~s~s~ 304 (502)
T TIGR02734 227 KLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHHTYRRLL--PNHPRRRYPAARLSRKRPSPSL 304 (502)
T ss_pred HHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHHHHHHhc--CccccccccccccccCCcCCee
Confidence 6 5679999999999988776 45666 778899999999999876654222 2222 33334556666655 57
Q ss_pred eEEEEEcC---CCcccCCCCCceeeecCC-------------CCCcceEE-Ee----eccccCCCcEEEEEecchhh---
Q 004944 326 NKVAMLFP---YVFWETDLDTFGHLTDDS-------------SSRGEFFL-FY----SYATVAGGPLLIALVAGEAA--- 381 (722)
Q Consensus 326 ~kV~l~f~---~~~w~~~~~~~g~l~~~~-------------~~~~~~~~-~~----~~~~p~g~~vl~~~v~g~~a--- 381 (722)
+++++.++ +++ ........++.++. .....+++ .+ +..+|+|...+.+++.....
T Consensus 305 ~~~~lgl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~v~~~s~~dp~~aP~G~~~~~~~~~~~~~~~~ 383 (502)
T TIGR02734 305 FVLYFGLLGVDGHW-PQLAHHTLCFGPRYKELFDEIFRKGRLAEDPSLYLHRPTVTDPSLAPPGCENLYVLAPVPHLGTA 383 (502)
T ss_pred eEEEEeeccccCcC-CCcCceeEecCcCHHHHHHHHhcCCCCCCCCcEEEEcCCCCCCCCCCCCCccEEEEEeCCCCCCC
Confidence 78888887 333 21111111111110 00111222 11 12356777776665543321
Q ss_pred -hhhcCCCHHHHHHHHHHHHHhh-cCCCCCCCCCCceEEEecCCCCCCC--------CcccCCCC--CCCCCccHHH-Hh
Q 004944 382 -HKFESMPPTDAVTKVLQILKGI-YEPKGINVPEPIQTVCTRWGGDPFS--------LGSYSNVA--VGASGDDYDI-MA 448 (722)
Q Consensus 382 -~~~~~ls~eel~~~vl~~L~~i-~~~~~~~v~~p~~~~~~rW~~~p~~--------~G~y~~~~--pG~~~~~~~~-l~ 448 (722)
..|.. ..+++.+.+++.|++. +|.. .+.++......|.+ .|+.-.+. ..+....++. ..
T Consensus 384 ~~~~~~-~k~~~~~~il~~l~~~~~p~l-------~~~i~~~~~~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~rp~~~~ 455 (502)
T TIGR02734 384 DVDWSV-EGPRYRDRILAYLEERAIPGL-------RDRIVVERTFTPADFRDRYNAWLGSAFSLEHTLTQSAWFRPHNRD 455 (502)
T ss_pred CCCcHH-HHHHHHHHHHHHHHHhcCCCh-------hHheEEEEEcCHHHHHHhcCCCCccccchhhchhhcccCCCCCCC
Confidence 12322 2466888999999987 6531 22222222222211 22211111 1111112221 24
Q ss_pred cccCCCcEEEcccccccccCccchHHHHHHHHHHHHHHHHHhh
Q 004944 449 ESVGDGRLFFAGEATIRRYPATMHGAFLSGLRETAKMAHCANA 491 (722)
Q Consensus 449 ~pv~~~~L~fAGd~ts~~~~g~~eGAi~SG~~AA~~Il~~l~~ 491 (722)
+|+ +||||||++++++ +++.||+.||+.||++|++.++.
T Consensus 456 t~i--~gLyl~G~~~~pG--~Gv~g~~~sg~~~a~~il~~~~~ 494 (502)
T TIGR02734 456 RKI--DNLYLVGAGTHPG--AGVPGVLGSAKATAKLMLGDLAP 494 (502)
T ss_pred CCC--CCEEEeCCCCCCC--CCHHHHHHHHHHHHHHHHhhccC
Confidence 567 8999999999763 58999999999999999986533
No 26
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.96 E-value=1e-28 Score=245.03 Aligned_cols=324 Identities=18% Similarity=0.229 Sum_probs=220.8
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeeeeeecCCCCCCCcceEeeccceEEcCCCCcHHHHHHHHhCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLGS 127 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~T~~~~g~~gn~~~~~~D~Ga~~~~~~~~~~l~~L~~eLGl 127 (722)
.+|+||||||+||+||+.|+.+|++|+||||+.-+|||+.|.+..++ .+|.|+.+|.... ..+..+++.+.-
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g-------~~DhGAqYfk~~~-~~F~~~Ve~~~~ 73 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGG-------RFDHGAQYFKPRD-ELFLRAVEALRD 73 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCc-------cccccceeecCCc-hHHHHHHHHHHh
Confidence 57999999999999999999999999999999999999999999988 8999999997543 222222222111
Q ss_pred CeeeecCCcceEecCCcccChhhhHHHHHHHHHHHHHHHHHHHHhhccccCCCHHHHHHHHHHHhccCCCHHHHHHHHHH
Q 004944 128 LLHKVRDKCPLYRLDGNSVDPEIDMKVEADFNRLLDKASRLRQLMGEVAMDVSLGSALETFWRVYWDSGNAEAMNLFNWH 207 (722)
Q Consensus 128 ~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~ 207 (722)
.- -+. .+.+.
T Consensus 74 ~g--------------------------------------------------lV~------------~W~~~-------- 83 (331)
T COG3380 74 DG--------------------------------------------------LVD------------VWTPA-------- 83 (331)
T ss_pred CC--------------------------------------------------cee------------ecccc--------
Confidence 00 000 00000
Q ss_pred HHhhhhccchhhHHHHHHhhccCCCCCCCCCeeeeCCChHHHHHHHHHcCCcccCceEEEEEecCCcEEEEE-C-CEEEE
Q 004944 208 LANLEYANASLLSKLSLAFWDQDDPYDMGGDHCFLPGGNGRLVQALVENVPILYEKTVHTIRYGSDGVQVLA-G-SQVFE 285 (722)
Q Consensus 208 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~~~~~~gG~~~L~~aLa~~l~I~ln~~V~~I~~~~~~v~V~~-~-G~~~~ 285 (722)
...+.... .+.......|.-.-||.+|.+.|+..++|.++++|++|...++.|++++ + ++...
T Consensus 84 --~~~~~~~~-------------~~~~~d~~pyvg~pgmsalak~LAtdL~V~~~~rVt~v~~~~~~W~l~~~~g~~~~~ 148 (331)
T COG3380 84 --VWTFTGDG-------------SPPRGDEDPYVGEPGMSALAKFLATDLTVVLETRVTEVARTDNDWTLHTDDGTRHTQ 148 (331)
T ss_pred --ccccccCC-------------CCCCCCCCccccCcchHHHHHHHhccchhhhhhhhhhheecCCeeEEEecCCCcccc
Confidence 00000000 0000001125556799999999999999999999999999999999999 4 45678
Q ss_pred eCEEEEcCChhhhhcCCcccCCCCCHHHHHHHHhcCCCceeEEEEEcCCCcccCCCCCceeeecCCCCCcceEEEeecc-
Q 004944 286 GDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDTFGHLTDDSSSRGEFFLFYSYA- 364 (722)
Q Consensus 286 AD~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ai~~l~~~~~~kV~l~f~~~~w~~~~~~~g~l~~~~~~~~~~~~~~~~~- 364 (722)
+|.||+|+|.+++..+.-.....+|+.+++++..+.|.+...+.+.|+.+.-.. ..|...+... .-++-.+.+
T Consensus 149 ~d~vvla~PAPQ~~~LLt~~~~~~p~~l~~~~a~V~y~Pc~s~~lg~~q~l~~P---~~G~~vdg~~---laWla~d~sK 222 (331)
T COG3380 149 FDDVVLAIPAPQTATLLTTDADDLPAALRAALADVVYAPCWSAVLGYPQPLDRP---WPGNFVDGHP---LAWLARDASK 222 (331)
T ss_pred cceEEEecCCCcchhhcCcccccchHHHHHhhccceehhHHHHHhcCCccCCCC---CCCcccCCCe---eeeeeccccC
Confidence 999999999998876321123468999999999999999999999998764221 1222222210 011111211
Q ss_pred --ccCCCcEEEEEecchhhhhhcCCCHHHHHHHHHHHHHhhcCCCCCCCCCCceEEEecCCCCCCCCcccCCCCCCCCCc
Q 004944 365 --TVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGD 442 (722)
Q Consensus 365 --~p~g~~vl~~~v~g~~a~~~~~ls~eel~~~vl~~L~~i~~~~~~~v~~p~~~~~~rW~~~p~~~G~y~~~~pG~~~~ 442 (722)
..+...+++.....+.+....+.++|+.+..+.......+++ .++.|.....++| .|+.+ ...-
T Consensus 223 ~g~~p~~~~~vvqasp~wSr~h~~~~~e~~i~~l~aA~~~~~~~---~~~~p~~s~~H~W--------rYA~P--~~~~- 288 (331)
T COG3380 223 KGHVPDGEIWVVQASPDWSREHLDHPAEQVIVALRAAAQELDGD---RLPEPDWSDAHRW--------RYAIP--NDAV- 288 (331)
T ss_pred CCCCCcCceEEEEeCchHHHHhhcCCHHHHHHHHHHhhhhccCC---CCCcchHHHhhcc--------ccccc--cccc-
Confidence 123334667777777777778888888887776666666654 3678888888999 33321 1110
Q ss_pred cHHHHh-cccCCCcEEEcccccccccCccchHHHHHHHHHHHHHHHHH
Q 004944 443 DYDIMA-ESVGDGRLFFAGEATIRRYPATMHGAFLSGLRETAKMAHCA 489 (722)
Q Consensus 443 ~~~~l~-~pv~~~~L~fAGd~ts~~~~g~~eGAi~SG~~AA~~Il~~l 489 (722)
..+.+- .+- .+||+||||++. |-+|||++||..+|.+|++.|
T Consensus 289 ~~~~L~ad~~--~~l~~cGDwc~G---grVEgA~LSGlAaA~~i~~~L 331 (331)
T COG3380 289 AGPPLDADRE--LPLYACGDWCAG---GRVEGAVLSGLAAADHILNGL 331 (331)
T ss_pred cCCccccCCC--CceeeecccccC---cchhHHHhccHHHHHHHHhcC
Confidence 111121 222 689999999985 689999999999999998753
No 27
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.96 E-value=5.6e-26 Score=258.89 Aligned_cols=421 Identities=15% Similarity=0.160 Sum_probs=228.2
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeeeeeecCCCCCCCcceEeeccceEEcCC----CCcHHHHHHH
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGT----LGNPLGILAK 123 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~T~~~~g~~gn~~~~~~D~Ga~~~~~~----~~~~l~~L~~ 123 (722)
+||||||||++||+||.+|+++|++|+|||+++.+||++.+++.+|+ .+|.|++++.+. ..+.+..+++
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~~~G~-------~fd~g~~~~~~~~~~~~~~~~~~~~~ 73 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFEREGY-------RFDVGASMIFGFGDKGTTNLLTRALA 73 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEeccCCE-------EEEecchhheecCCcccccHHHHHHH
Confidence 58999999999999999999999999999999999999999998776 999999997654 2345566677
Q ss_pred HhCCCeeeecCC--cceEecCCcccChhhhHH------------HHHHHHHHHHHHHHHHHHhhcc--ccCCCHHHHH--
Q 004944 124 QLGSLLHKVRDK--CPLYRLDGNSVDPEIDMK------------VEADFNRLLDKASRLRQLMGEV--AMDVSLGSAL-- 185 (722)
Q Consensus 124 eLGl~~~~~~~~--~~~~~~~G~~~~~~~~~~------------~~~~~~~ll~~~~~~~~~~~~~--~~~~s~~~~l-- 185 (722)
.+|......... ..+..++|..+....+.. ....+.++++...+........ ........+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (493)
T TIGR02730 74 AVGRKLETIPDPVQIHYHLPNGLNVKVHREYDDFIQELVAKFPHEKEGIRRFYDECWQVFNCLNSMELLSLEEPRYLFRV 153 (493)
T ss_pred HcCCcccccCCCccEEEECCCCeeEeeecCHHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHHHhhhhccccChHHHHHH
Confidence 777554332222 223344554333221111 1122333333333222211110 0000000000
Q ss_pred ----------------HHHHHHhcc-CCCHHHHHHHHHHHHhhhhccchhhHH-HHHHhhccCCCCCCCCCeeeeCCChH
Q 004944 186 ----------------ETFWRVYWD-SGNAEAMNLFNWHLANLEYANASLLSK-LSLAFWDQDDPYDMGGDHCFLPGGNG 247 (722)
Q Consensus 186 ----------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~~~~~~~~~~~~g~~~~~~gG~~ 247 (722)
..+.++... ..++..+.++................. .....+. . ...+..+++.||+.
T Consensus 154 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~p~~~~~~~~~---~-~~~~g~~~~~gG~~ 229 (493)
T TIGR02730 154 FFKHPLACLGLAKYLPQNAGDIARRYIRDPGLLKFIDIECFCWSVVPADQTPMINAGMVFS---D-RHYGGINYPKGGVG 229 (493)
T ss_pred HhhchhhhhHHHHHhhccHHHHHHHhcCCHHHHHHHHHHHHhccCCCcccchhhhHHHhhc---c-cccceEecCCChHH
Confidence 001111111 122333333322211111111111100 1111111 0 12245678999999
Q ss_pred HHHHHHHH-----cCCcccCceEEEEEecCCcEE-EEE-CCEEEEeCEEEEcCChhhhhcCCcccCCCCCHHHHHHHHhc
Q 004944 248 RLVQALVE-----NVPILYEKTVHTIRYGSDGVQ-VLA-GSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRL 320 (722)
Q Consensus 248 ~L~~aLa~-----~l~I~ln~~V~~I~~~~~~v~-V~~-~G~~~~AD~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ai~~l 320 (722)
.++++|.+ |++|+++++|++|..+++++. |.+ +|++++||.||+|+.+..+....+. ...+++.....++++
T Consensus 230 ~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~-~~~~~~~~~~~~~~~ 308 (493)
T TIGR02730 230 QIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTFGKLLK-AENLPKKEKNWQRNY 308 (493)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHHHHHhCC-ccccchhhHHHHhhc
Confidence 99999976 467999999999998876654 555 7888999999999876554431221 123455444556677
Q ss_pred CCC-ceeEEEEEcCCCcccCCCCCceeeecC----CCCCcceEEEe-----eccccCCCcEEEEEecchhhhhhcCC---
Q 004944 321 GYG-LLNKVAMLFPYVFWETDLDTFGHLTDD----SSSRGEFFLFY-----SYATVAGGPLLIALVAGEAAHKFESM--- 387 (722)
Q Consensus 321 ~~~-~~~kV~l~f~~~~w~~~~~~~g~l~~~----~~~~~~~~~~~-----~~~~p~g~~vl~~~v~g~~a~~~~~l--- 387 (722)
+++ +.+++++.++...-.........+.++ ....+.+++.. +..+|+|..++.+++... ...|..+
T Consensus 309 ~~s~s~~~~~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~~ps~~dps~aP~G~~~i~~~~~~~-~~~w~~~~~~ 387 (493)
T TIGR02730 309 VKSPSFLSLHLGVKADVLPPGTECHHILLEDWTNLEKPQGTIFVSIPTLLDPSLAPEGHHIIHTFTPSS-MEDWQGLSPK 387 (493)
T ss_pred cCCCceEEEEEEecCccCCCCCCccEEecchhhccCCCCCeEEEEeCCCCCCCCCcCCcEEEEEecCCC-hhhccCCCcH
Confidence 666 588899998774321111100111010 01112222221 223566777777666422 2223222
Q ss_pred ----CHHHHHHHHHHHHHhhcCCCCCCCCCCceEEEe----cCCCC-CCCCcccCCCCCCC-CCccH-HHHhcccCCCcE
Q 004944 388 ----PPTDAVTKVLQILKGIYEPKGINVPEPIQTVCT----RWGGD-PFSLGSYSNVAVGA-SGDDY-DIMAESVGDGRL 456 (722)
Q Consensus 388 ----s~eel~~~vl~~L~~i~~~~~~~v~~p~~~~~~----rW~~~-p~~~G~y~~~~pG~-~~~~~-~~l~~pv~~~~L 456 (722)
..+++.+.+++.|+++++.. .+-+..... .|... ....|+|....-.. ....+ +...+|+ +||
T Consensus 388 ~y~~~k~~~~~~il~~l~~~~p~l----~~~I~~~~~~TP~t~~r~~~~~~G~~G~~~~~~~~~~~~~~~~~t~i--~gL 461 (493)
T TIGR02730 388 DYEAKKEADAERIIDRLEKIFPGL----DSAIDYKEVGTPRTHRRFLGRDSGTYGPIPRRTLPGLLPMPFNRTAI--PGL 461 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCh----hhcEEEEEeeCchhHHHHhCCCCcccCCcccccccccccCCCCCCCC--CCe
Confidence 24557888999999988632 111111110 11110 11234442111000 00011 1235777 899
Q ss_pred EEcccccccccCccchHHHHHHHHHHHHHHHHH
Q 004944 457 FFAGEATIRRYPATMHGAFLSGLRETAKMAHCA 489 (722)
Q Consensus 457 ~fAGd~ts~~~~g~~eGAi~SG~~AA~~Il~~l 489 (722)
|+||+++.++ +++.||+.||+.||++|++.+
T Consensus 462 yl~G~~~~pG--~Gv~g~~~sG~~~a~~i~~~~ 492 (493)
T TIGR02730 462 YCVGDSCFPG--QGLNAVAFSGFACAHRVAADL 492 (493)
T ss_pred EEecCcCCCC--CCHHHHHHHHHHHHHHHHhhc
Confidence 9999999763 689999999999999998754
No 28
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.94 E-value=5.5e-25 Score=231.13 Aligned_cols=416 Identities=17% Similarity=0.194 Sum_probs=258.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCc--EEEEecCCCcceeeeeeecCCCCCCCcceEeeccceEEcCCCC--cHHHHH
Q 004944 46 NKLRVLVIGAGLAGLAAARQLMRLGFR--VTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLG--NPLGIL 121 (722)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~--V~VLEa~~r~GGr~~T~~~~g~~gn~~~~~~D~Ga~~~~~~~~--~~l~~L 121 (722)
..++|+|||||||||+|||+|++.+.+ |+|+|+++|+||+++|.+..+ ++.||.|+..+..... -.+..|
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~n------g~ifE~GPrtlrpag~~g~~~l~l 83 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQN------GFIFEEGPRTLRPAGPGGAETLDL 83 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCC------ceeeccCCCccCcCCcchhHHHHH
Confidence 348999999999999999999999876 566999999999999954443 3699999999987643 124568
Q ss_pred HHHhCCCee--eecCCc-----ceEecCCcccChhhhHHH----------HHHHHHHHHHHHHHHHHhhccccCCCHHHH
Q 004944 122 AKQLGSLLH--KVRDKC-----PLYRLDGNSVDPEIDMKV----------EADFNRLLDKASRLRQLMGEVAMDVSLGSA 184 (722)
Q Consensus 122 ~~eLGl~~~--~~~~~~-----~~~~~~G~~~~~~~~~~~----------~~~~~~ll~~~~~~~~~~~~~~~~~s~~~~ 184 (722)
+++||++.. .++..+ .+.++.|++...+....- ...+..++. ..++........++|+.++
T Consensus 84 v~dLGl~~e~~~i~~~~paaknr~l~~~~~L~~vP~sl~~s~~~~l~p~~k~L~~a~l~--e~fr~~~~~~~~dESV~sF 161 (491)
T KOG1276|consen 84 VSDLGLEDELQPIDISHPAAKNRFLYVPGKLPTVPSSLVGSLKFSLQPFGKPLLEAFLR--ELFRKKVSDPSADESVESF 161 (491)
T ss_pred HHHcCccceeeecCCCChhhhheeeccCcccccCCcccccccccccCcccchhHHHHHh--hhccccCCCCCccccHHHH
Confidence 999999643 344332 345667766554432211 111111111 1111111233567788777
Q ss_pred HHH-HHHH-------------hccCCCHHHHHHHHHHHHhhhhccchhhHHHHHHhhccCC-----------CCCCCCCe
Q 004944 185 LET-FWRV-------------YWDSGNAEAMNLFNWHLANLEYANASLLSKLSLAFWDQDD-----------PYDMGGDH 239 (722)
Q Consensus 185 l~~-~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-----------~~~~~g~~ 239 (722)
.+. |-.. +....+...+......++..|...++.+..+..+.+.... .....-..
T Consensus 162 ~~RrfG~eV~d~~isp~i~GiyAgD~~~LSmk~~F~~l~~~Eqk~Gsi~~G~i~~~~~~~~~k~~e~~~~~~~~~e~~~~ 241 (491)
T KOG1276|consen 162 ARRRFGKEVADRLISPFIRGIYAGDPSELSMKSSFGKLWKVEQKHGSIILGTIRAKFARKRTKKAETALSAQAKKEKWTM 241 (491)
T ss_pred HHHhhhHHHHHHHHHHHhCccccCChHHhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhcCCCccchhhhhhcccccch
Confidence 642 1110 1111112222222233344444444433332222221110 00011124
Q ss_pred eeeCCChHHHHHHHHHcCC-----cccCceEEEEEecC-CcEEEEE---CC-EEEEeCEEEEcCChhhhhcCCcccCCCC
Q 004944 240 CFLPGGNGRLVQALVENVP-----ILYEKTVHTIRYGS-DGVQVLA---GS-QVFEGDMVLCTVPLGVLKSGSIKFIPEL 309 (722)
Q Consensus 240 ~~~~gG~~~L~~aLa~~l~-----I~ln~~V~~I~~~~-~~v~V~~---~G-~~~~AD~VI~AvP~~~l~~~~i~~~p~L 309 (722)
+.++||++.+.++|.+.+. |.++.++..+.... ++|.++. ++ ..+..+++..|+|..++.. ..+.+
T Consensus 242 ~sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~~~~~~tl~~~~~~~~~~~~~~~~t~~~~k~a~----ll~~~ 317 (491)
T KOG1276|consen 242 FSLKGGLETLPKALRKSLGEREVSISLGLKLSGNSKSRSGNWSLTLVDHSGTQRVVVSYDAATLPAVKLAK----LLRGL 317 (491)
T ss_pred hhhhhhHhHhHHHHHHHhcccchhhhcccccccccccccCCceeEeEcCCCceeeeccccccccchHHhhh----hcccc
Confidence 5688999999999988663 67777777776653 4577666 33 3455677778999999876 56777
Q ss_pred CHHHHHHHHhcCCCceeEEEEEcCCCcccCCCCCceeeecC--CCCCcceEEEeec-ccc--CCCcEEEEEecchhhhhh
Q 004944 310 PQRKLDAIKRLGYGLLNKVAMLFPYVFWETDLDTFGHLTDD--SSSRGEFFLFYSY-ATV--AGGPLLIALVAGEAAHKF 384 (722)
Q Consensus 310 p~~~~~ai~~l~~~~~~kV~l~f~~~~w~~~~~~~g~l~~~--~~~~~~~~~~~~~-~~p--~g~~vl~~~v~g~~a~~~ 384 (722)
.+....++.++.|.++..|++.|+.+--.-+..+||.+++. .+.....-..|+. -.| ++.+.+++++.+.....+
T Consensus 318 ~~sls~~L~ei~y~~V~vVn~~yp~~~~~~pl~GFG~LvPs~~~~~~~~LG~ifdS~~Fp~~~~s~~vtvm~gg~~~~n~ 397 (491)
T KOG1276|consen 318 QNSLSNALSEIPYVPVAVVNTYYPKEKIDLPLQGFGLLVPSEPKNGFKTLGTIFDSMLFPDRSPSPKVTVMMGGGGSTNT 397 (491)
T ss_pred chhhhhhhhcCCCCceEEEEEeccCcccccccccceeeccCCCCCCCceeEEEeecccCCCCCCCceEEEEecccccccC
Confidence 77778899999999999999999886545577899999983 3333333333332 222 223366666665544433
Q ss_pred --cCCCHHHHHHHHHHHHHhhcCCCCCCCCCCceEEEecCCC--CCCCCcccCCCCCCCCCccHHHHhcccCCCcEEEcc
Q 004944 385 --ESMPPTDAVTKVLQILKGIYEPKGINVPEPIQTVCTRWGG--DPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAG 460 (722)
Q Consensus 385 --~~ls~eel~~~vl~~L~~i~~~~~~~v~~p~~~~~~rW~~--~p~~~G~y~~~~pG~~~~~~~~l~~pv~~~~L~fAG 460 (722)
...++||+++.+.++|.++++..+ .|....++-|.. .+|..|++.... ..+..+.+.- -.+|++||
T Consensus 398 ~~~~~S~ee~~~~v~~alq~~Lgi~~----~P~~~~v~l~~~ciPqy~vGh~~~le-----~a~~~l~~~~-g~~l~l~G 467 (491)
T KOG1276|consen 398 SLAVPSPEELVNAVTSALQKMLGISN----KPVSVNVHLWKNCIPQYTVGHDDVLE-----AAKSMLTDSP-GLGLFLGG 467 (491)
T ss_pred cCCCCCHHHHHHHHHHHHHHHhCCCC----CcccccceehhhcccceecchHHHHH-----HHHHHHHhCC-CCceEeec
Confidence 346899999999999999998652 365555666653 234444332111 1223333332 25899999
Q ss_pred cccccccCccchHHHHHHHHHHHHHH
Q 004944 461 EATIRRYPATMHGAFLSGLRETAKMA 486 (722)
Q Consensus 461 d~ts~~~~g~~eGAi~SG~~AA~~Il 486 (722)
.|+.+ -.+..+|.||+++|.+++
T Consensus 468 ~~y~G---v~vgdcI~sg~~~A~~v~ 490 (491)
T KOG1276|consen 468 NHYGG---VSVGDCIESGRKTAVEVI 490 (491)
T ss_pred cccCC---CChhHHHHhhHHHHHhhc
Confidence 99985 378999999999998774
No 29
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.90 E-value=5.6e-23 Score=232.97 Aligned_cols=237 Identities=28% Similarity=0.313 Sum_probs=142.0
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeeeeeecCCCCCCCcceEeeccceEEcCCCCcHHHHHHHHhC
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLG 126 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~T~~~~g~~gn~~~~~~D~Ga~~~~~~~~~~l~~L~~eLG 126 (722)
.+||||||||++||+||.+|+++|++|+||||++++|||++|.+..|+ .||+|++++...... .+.++++
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~Gf-------~fd~G~~~~~~~~~~---~~~~~l~ 72 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELDGF-------RFDTGPSWYLMPDPG---PLFRELG 72 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEeccce-------EeccCcceeecCchH---HHHHHhc
Confidence 489999999999999999999999999999999999999999999876 999999998876533 3556666
Q ss_pred -CCeee-----ecCCcceEecCCcccChhhhHHH------------HHHHHHHHHHHHHHHH-Hhhcc-c---c-----C
Q 004944 127 -SLLHK-----VRDKCPLYRLDGNSVDPEIDMKV------------EADFNRLLDKASRLRQ-LMGEV-A---M-----D 178 (722)
Q Consensus 127 -l~~~~-----~~~~~~~~~~~G~~~~~~~~~~~------------~~~~~~ll~~~~~~~~-~~~~~-~---~-----~ 178 (722)
+.... .+.....+..+|..+....+... ...+..++....+..+ ..... . . .
T Consensus 73 ~l~~~~l~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (487)
T COG1233 73 NLDADGLDLLPPDPAYRVFLPDGDAIDVYTDLEATAELLESLEPGDGEALARYLRLLARLYELLAALLLAPPRSELLLVP 152 (487)
T ss_pred cCcccceeeeccCCceeeecCCCCEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHhhHHHHhhcCCCchhhhhhcc
Confidence 44332 22334455666665544322211 1122333332222111 11111 0 0 1
Q ss_pred CCHHHHHHHH-------HHHh-ccCCCHHHHHHHHHHHHhhhhccchhhHHHHHHhhccCCCCCCCCCeeeeCCChHHHH
Q 004944 179 VSLGSALETF-------WRVY-WDSGNAEAMNLFNWHLANLEYANASLLSKLSLAFWDQDDPYDMGGDHCFLPGGNGRLV 250 (722)
Q Consensus 179 ~s~~~~l~~~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~~~~~~gG~~~L~ 250 (722)
.....++... ..+. ....++..+..+........ ........+ ..++. ......++.+++||+++|+
T Consensus 153 ~~~~~~l~~~~~~~~~~~~~~~~~f~~~~~r~~~~~~~~~~~-~~p~~~~a~-~~~~~---~~~~~~G~~~p~GG~~al~ 227 (487)
T COG1233 153 DTPERLLRLLGFSLTSALDFFRGRFGSELLRALLAYSAVYGG-APPSTPPAL-YLLLS---HLGLSGGVFYPRGGMGALV 227 (487)
T ss_pred ccHHHHHHHHHHhhhhHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCCchhHH-HHHHH---HhcccCCeeeeeCCHHHHH
Confidence 1111221111 0011 01222333333332211111 111111111 11111 1123456889999999999
Q ss_pred HHHHH-----cCCcccCceEEEEEecCCc-EEEEE-CCEEEEeCEEEEcCChhhh
Q 004944 251 QALVE-----NVPILYEKTVHTIRYGSDG-VQVLA-GSQVFEGDMVLCTVPLGVL 298 (722)
Q Consensus 251 ~aLa~-----~l~I~ln~~V~~I~~~~~~-v~V~~-~G~~~~AD~VI~AvP~~~l 298 (722)
++|++ |++|+++++|++|..++++ +++++ +++.+++|.||+++-+...
T Consensus 228 ~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~~~~ 282 (487)
T COG1233 228 DALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADPALL 282 (487)
T ss_pred HHHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCchhhh
Confidence 99987 6789999999999999875 66666 5578999999999977333
No 30
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.87 E-value=1.9e-21 Score=212.40 Aligned_cols=417 Identities=18% Similarity=0.133 Sum_probs=214.8
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeeeeeecCCCCCCCcceEeeccceEEcCCCCcHHHHHHHHhCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLGS 127 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~T~~~~g~~gn~~~~~~D~Ga~~~~~~~~~~l~~L~~eLGl 127 (722)
++|+|+|||+|||+||++|+++|++|+|+|+++++||.+.|++...+ ..+|+|-|+|+++|.|. ..++++++.
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~dg------~~~E~glh~f~~~Y~n~-~~ll~~~~~ 73 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSDG------NHVEHGLHVFFGCYYNL-LTLLKELPI 73 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecCCC------CeeeeeeEEechhHHHH-HHHhhhCCc
Confidence 47999999999999999999999999999999999999999998654 49999999999999874 458899988
Q ss_pred CeeeecCCcc-eE-e---cCCccc-------ChhhhHHHHHHHHHHHHHHHHHHHHh------------hccccCCCHHH
Q 004944 128 LLHKVRDKCP-LY-R---LDGNSV-------DPEIDMKVEADFNRLLDKASRLRQLM------------GEVAMDVSLGS 183 (722)
Q Consensus 128 ~~~~~~~~~~-~~-~---~~G~~~-------~~~~~~~~~~~~~~ll~~~~~~~~~~------------~~~~~~~s~~~ 183 (722)
+......... .+ - ..|..- +.+............+..-.+.+-.. .+-.++.+..+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~p~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~g~~~~~~eld~~s~~d 153 (485)
T COG3349 74 EDRLQLREHTKTFVGSGTRPGAIGRFARPDAPQPTNGLKAFLRLPQLPRREKIRFVLRLGDAPIGADRSLRELDKISFAD 153 (485)
T ss_pred hheeehHhhhhhhcccCCCCCcccccccCCCCCcchhhhhhhhccccCHHHHhHHhhccccccchhHHHHHHHhcccHHH
Confidence 7544321111 11 0 011100 00111000000000000000000000 00123344444
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHhhhhccchhhHH-HHHHhhccCCCCC-CCCCeeeeCCCh-----HHHHHHHH-H
Q 004944 184 ALETFWRVYWDSGNAEAMNLFNWHLANLEYANASLLSK-LSLAFWDQDDPYD-MGGDHCFLPGGN-----GRLVQALV-E 255 (722)
Q Consensus 184 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~~~~~~~~~~-~~g~~~~~~gG~-----~~L~~aLa-~ 255 (722)
|+... ..........+......+.+...+..++ ....++....... .......+.+++ ..+.+.+. .
T Consensus 154 ~l~~~-----g~~~~~~k~~~~~~~~~l~f~~~e~~sa~~~lt~~~~~~~~~~~~~i~~~~~g~~~E~~~~p~~~yi~~~ 228 (485)
T COG3349 154 WLKEK-----GAREGAYKAAFAPIALALTFIDPEGCSARFFLTILNLFLIVTLEASILRNLRGSPDEVLLQPWTEYIPER 228 (485)
T ss_pred HHHHh-----CCCchhHHHHHHHHHHhhcccCcccCcchhHHHHHHHHHHhccCcchhhhhcCCCcceeeehhhhhcccc
Confidence 44321 1112222333333333222222211111 1111100000000 011122233333 22333443 3
Q ss_pred cCCcccCceEEEEEecCCc-----EEEEECCEE---EEeCEEEEcCChhhhhcCCcccCCC-CC-HHHHHHHHhcCCCce
Q 004944 256 NVPILYEKTVHTIRYGSDG-----VQVLAGSQV---FEGDMVLCTVPLGVLKSGSIKFIPE-LP-QRKLDAIKRLGYGLL 325 (722)
Q Consensus 256 ~l~I~ln~~V~~I~~~~~~-----v~V~~~G~~---~~AD~VI~AvP~~~l~~~~i~~~p~-Lp-~~~~~ai~~l~~~~~ 325 (722)
+.+++...+|+.|...... +.+...+.. ..++.++.+.....+.+ ..|. -+ ....+.+..+...++
T Consensus 229 G~~v~~~~pv~~l~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~v~~~~~----~~ps~W~~~~~f~~ly~l~~~p~ 304 (485)
T COG3349 229 GRKVHADYPVKELDLDGARGLAKVTGGDVTGPEQEQQAALAVVDAFAVQRFKR----DLPSEWPKWSNFDGLYGLRLVPV 304 (485)
T ss_pred CceeeccceeeeeeccccccccceEeeeecCcceEeeehhhhhcccccchHhh----cCcccccccccccccccccccce
Confidence 6679999999999887522 222223333 34555555555555553 2221 11 223345566677789
Q ss_pred eEEEEEcCCCcccCCC--CCceee---ecCCCCCcceEEEe----eccccCCCcEEEEEecchhhhhhcCCCHHHHHHHH
Q 004944 326 NKVAMLFPYVFWETDL--DTFGHL---TDDSSSRGEFFLFY----SYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKV 396 (722)
Q Consensus 326 ~kV~l~f~~~~w~~~~--~~~g~l---~~~~~~~~~~~~~~----~~~~p~g~~vl~~~v~g~~a~~~~~ls~eel~~~v 396 (722)
.++.++|+...|.... ..++.. .......+.+.... .+..|.....+...+. ....|...++++++..+
T Consensus 305 ~~~~l~~~~~~~~~~~~~~~~~~dn~~~s~~~l~~~~ad~~~~~~~y~e~g~~~~le~~~~--~~~~~~~~~~~~~~a~~ 382 (485)
T COG3349 305 ITLHLRFDGWVTELTDRNQQFGIDNLLWSDDTLGGVVADLALTSPDYVEPGAGCYLEKVLA--PGWPFLFESDEAIVATF 382 (485)
T ss_pred eEEEEeecCccccccccchhhhhhccccccccCCceeeeccccchhhccccchhhhhhhhc--ccccccccchhhHHHHH
Confidence 9999999864332211 111111 00111111110000 1111111111111111 22345666789999999
Q ss_pred HHHHHhhcCCCCCCCCCCceEEEecCCCCCCCCcccCCCCCCCCCccHHHHhcccCCCcEEEcccccccccCccchHHHH
Q 004944 397 LQILKGIYEPKGINVPEPIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYPATMHGAFL 476 (722)
Q Consensus 397 l~~L~~i~~~~~~~v~~p~~~~~~rW~~~p~~~G~y~~~~pG~~~~~~~~l~~pv~~~~L~fAGd~ts~~~~g~~eGAi~ 476 (722)
.+++...+++.. . ......+.+- .-+.....||.. ..++...+|+ +|+++|||++...+.++||+|..
T Consensus 383 e~~~~~~vP~~~-~--a~~~~~~i~~------~q~~~~~~pgs~-~~rP~~~Tpv--~N~~laGd~~~~~~~~smE~A~~ 450 (485)
T COG3349 383 EKELYELVPSLA-E--AKLKSSVLVN------QQSLYGLAPGSY-HYRPEQKTPI--PNLLLAGDYTKQPYLGSMEGATL 450 (485)
T ss_pred HHHhhhcCCchh-c--ccccccceec------cccccccCCCcc-ccCCCCCCCc--cchhhccceeecCCcCccchhhh
Confidence 999998876531 1 1111111111 112223445554 3466667787 99999999999878899999999
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 004944 477 SGLRETAKMAHCANARAL 494 (722)
Q Consensus 477 SG~~AA~~Il~~l~~~~~ 494 (722)
||++||+.|+..+.....
T Consensus 451 sGl~AA~~v~~~~~~~~~ 468 (485)
T COG3349 451 SGLLAANAILDNLGHHAP 468 (485)
T ss_pred hHHHHHHHHHHhhhhcCc
Confidence 999999999988764444
No 31
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.87 E-value=2.7e-20 Score=190.78 Aligned_cols=272 Identities=20% Similarity=0.146 Sum_probs=177.2
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeeeeeecCCCCCCCcceEeeccceEEcC-CCCcHHHHHHHHh
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTG-TLGNPLGILAKQL 125 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~T~~~~g~~gn~~~~~~D~Ga~~~~~-~~~~~l~~L~~eL 125 (722)
+++|+|||+|||||+|||.|++. ++|||||+.+++||++.|...+-. +.++.+|.|.+++.+ .|+| +..|++++
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~d---~~g~~vDtGfiVyn~~tYpn-l~~Lf~~i 82 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNTD---GGGVFVDTGFIVYNERTYPN-LTRLFKTI 82 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeecccc---CCceeecceeEEecCCCcch-HHHHHHHc
Confidence 48899999999999999999876 799999999999999999975533 335799999999987 5655 66699999
Q ss_pred CCCeeeecCCcceEecCC-cccCh-----h----hhHHHHHHHHHHHHHHHHHHHHhh-----ccccCCCHHHHHHHHHH
Q 004944 126 GSLLHKVRDKCPLYRLDG-NSVDP-----E----IDMKVEADFNRLLDKASRLRQLMG-----EVAMDVSLGSALETFWR 190 (722)
Q Consensus 126 Gl~~~~~~~~~~~~~~~G-~~~~~-----~----~~~~~~~~~~~ll~~~~~~~~~~~-----~~~~~~s~~~~l~~~~~ 190 (722)
|.+.....-..++-..+| ..+.- . ...-....|..++..+.++..... ....+.++++++..-
T Consensus 83 Gv~t~as~Msf~v~~d~gglEy~g~tgl~~L~aqk~n~l~pRf~~mlaeiLrf~r~~~~~~d~~~~~~~tl~~~L~~~-- 160 (447)
T COG2907 83 GVDTKASFMSFSVSLDMGGLEYSGLTGLAGLLAQKRNLLRPRFPCMLAEILRFYRSDLAPSDNAGQGDTTLAQYLKQR-- 160 (447)
T ss_pred CCCCcccceeEEEEecCCceeeccCCCccchhhccccccchhHHHHHHHHHHHhhhhccchhhhcCCCccHHHHHHhc--
Confidence 998654333222221111 11110 0 000112344445444444333211 114567888877531
Q ss_pred HhccCCCHHH-HHHHHHHHHhhhhccchhhHHHHH----HhhccCCCC--CCCCCeeeeCCChHHHHHHHHHcCC--ccc
Q 004944 191 VYWDSGNAEA-MNLFNWHLANLEYANASLLSKLSL----AFWDQDDPY--DMGGDHCFLPGGNGRLVQALVENVP--ILY 261 (722)
Q Consensus 191 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~l~~----~~~~~~~~~--~~~g~~~~~~gG~~~L~~aLa~~l~--I~l 261 (722)
...... .+++.+..+.+............+ .++...... .....|..+.||....++.|+.++. |.+
T Consensus 161 ----~f~~af~e~~l~P~~aaiwstp~~d~~~~pa~~~~~f~~nhGll~l~~rp~wrtV~ggS~~yvq~laa~~~~~i~t 236 (447)
T COG2907 161 ----NFGRAFVEDFLQPLVAAIWSTPLADASRYPACNFLVFTDNHGLLYLPKRPTWRTVAGGSRAYVQRLAADIRGRIET 236 (447)
T ss_pred ----CccHHHHHHhHHHHHHHHhcCcHhhhhhhhHHHHHHHHhccCceecCCCCceeEcccchHHHHHHHhccccceeec
Confidence 111111 122333333333333322222222 222222211 1223467788999999999999986 999
Q ss_pred CceEEEEEecCCcEEEEE-CCEEEEeCEEEEcCChhhhhcCCcccCCCCCHHHHHHHHhcCCCceeEEEEEcC
Q 004944 262 EKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYGLLNKVAMLFP 333 (722)
Q Consensus 262 n~~V~~I~~~~~~v~V~~-~G~~~~AD~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ai~~l~~~~~~kV~l~f~ 333 (722)
+++|.+|.+-.++|.++. +|++-++|.||+|+.+..... +.++-+++-.+.+.++.|.....|.....
T Consensus 237 ~~~V~~l~rlPdGv~l~~~~G~s~rFD~vViAth~dqAl~----mL~e~sp~e~qll~a~~Ys~n~aVlhtd~ 305 (447)
T COG2907 237 RTPVCRLRRLPDGVVLVNADGESRRFDAVVIATHPDQALA----LLDEPSPEERQLLGALRYSANTAVLHTDA 305 (447)
T ss_pred CCceeeeeeCCCceEEecCCCCccccceeeeecChHHHHH----hcCCCCHHHHHHHHhhhhhhceeEEeecc
Confidence 999999999999999887 799999999999999887764 34444455567999999998777776543
No 32
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=99.73 E-value=3.8e-16 Score=165.41 Aligned_cols=240 Identities=17% Similarity=0.148 Sum_probs=138.4
Q ss_pred CCCCCeeeeCCChHHHHHHHHHcC-----CcccCceEEEEEecCCcEE-EEE-CCEEEEeCEEEEcCChhhhhcCCcccC
Q 004944 234 DMGGDHCFLPGGNGRLVQALVENV-----PILYEKTVHTIRYGSDGVQ-VLA-GSQVFEGDMVLCTVPLGVLKSGSIKFI 306 (722)
Q Consensus 234 ~~~g~~~~~~gG~~~L~~aLa~~l-----~I~ln~~V~~I~~~~~~v~-V~~-~G~~~~AD~VI~AvP~~~l~~~~i~~~ 306 (722)
...+.+.++.|||+++.+++++++ +|.+++.|.+|..+++++. |.. +|.++.+..||+++.+..+.. .+.
T Consensus 251 ~~~g~~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~---kLl 327 (561)
T KOG4254|consen 251 GHKGGWGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDTFE---KLL 327 (561)
T ss_pred ccCCcccCCCCChhHHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHHHHH---HhC
Confidence 355678999999999999998855 5999999999999987654 444 999999999999887766642 233
Q ss_pred C--CCCHHHHHHHHhcCCC-ceeE----EEEEcCCCcccCCCCCceee--------------ecC-----CCCCcceEE-
Q 004944 307 P--ELPQRKLDAIKRLGYG-LLNK----VAMLFPYVFWETDLDTFGHL--------------TDD-----SSSRGEFFL- 359 (722)
Q Consensus 307 p--~Lp~~~~~ai~~l~~~-~~~k----V~l~f~~~~w~~~~~~~g~l--------------~~~-----~~~~~~~~~- 359 (722)
| .||.+. .++.+.+. +..+ .++..+..- ..+....++. ..+ ...++.+++
T Consensus 328 p~e~LPeef--~i~q~d~~spv~k~~~psFl~~~~~~-~~plph~~~~i~~~~ed~~~~H~~v~D~~~gl~s~~pvI~~s 404 (561)
T KOG4254|consen 328 PGEALPEEF--VIQQLDTVSPVTKDKLPSFLCLPNTK-SLPLPHHGYTIHYNAEDTQAHHRAVEDPRNGLASHRPVIELS 404 (561)
T ss_pred CCccCCchh--hhhhcccccccccccCcceeecCCCC-CCCCCccceeEEecCchHHHHHHHHhChhhcccccCCeEEEe
Confidence 4 377765 56666443 2332 333322111 1111111100 000 111222222
Q ss_pred Ee----eccccCCCcEEEEEecchhhhhhcCCC-------HHHHHHHHHHHHHhhcCCCCCCCCCCceEEEe-cCCCCC-
Q 004944 360 FY----SYATVAGGPLLIALVAGEAAHKFESMP-------PTDAVTKVLQILKGIYEPKGINVPEPIQTVCT-RWGGDP- 426 (722)
Q Consensus 360 ~~----~~~~p~g~~vl~~~v~g~~a~~~~~ls-------~eel~~~vl~~L~~i~~~~~~~v~~p~~~~~~-rW~~~p- 426 (722)
+. +.-.|++++++..|..... ..|+... .++..+++++.+.++++.....+ ....+- --.+..
T Consensus 405 iPS~lDptlappg~Hvl~lf~~~t~-~~w~g~~~~eye~~K~~~ae~~~~~ie~l~Pgfsssv---~~~dvgTP~t~qr~ 480 (561)
T KOG4254|consen 405 IPSSLDPTLAPPGKHVLHLFTQYTP-EEWEGGLKGEYETKKEAFAERVFSVIEKLAPGFSSSV---ESYDVGTPPTHQRF 480 (561)
T ss_pred cccccCCCcCCCCceEEEEeccCCc-cccccCCcccchHHHHHHHHHHHHHHHHHcCCccceE---EEEecCCCchhhHH
Confidence 22 2235788888888876543 3444433 36678899999998887431111 111110 001111
Q ss_pred --CCCcccCCCCCCCC--CccHHHH-----hcccCCCcEEEcccccccccCccchHHHHHHHHHHHHHHHHH
Q 004944 427 --FSLGSYSNVAVGAS--GDDYDIM-----AESVGDGRLFFAGEATIRRYPATMHGAFLSGLRETAKMAHCA 489 (722)
Q Consensus 427 --~~~G~y~~~~pG~~--~~~~~~l-----~~pv~~~~L~fAGd~ts~~~~g~~eGAi~SG~~AA~~Il~~l 489 (722)
...|.|...+-+.. .-.++.. ++|+ ++||+||+.+.++ |++-+|- |..+|...+...
T Consensus 481 l~~~~Gn~~~~~~~ld~g~l~~Pv~~~s~y~tPI--~~LYlcGs~afPG--gGV~a~a--G~~~A~~a~~~~ 546 (561)
T KOG4254|consen 481 LGRPGGNIFHGAMGLDQGYLHRPVMAWSNYSTPI--PGLYLCGSGAFPG--GGVMAAA--GRLAAHSAILDR 546 (561)
T ss_pred hcCCCCcccCcccccccccccCCccccccCCCCC--CceEEecCCCCCC--CCccccc--hhHHHHHHhhhh
Confidence 12344433211110 0122333 7888 9999999999874 5665654 888888877654
No 33
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=99.68 E-value=1.8e-15 Score=164.69 Aligned_cols=233 Identities=12% Similarity=0.114 Sum_probs=132.4
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeeeeeecCCCCCCCcceEeeccceEEcCCCCcHHHHHHHHhC-
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLG- 126 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~T~~~~g~~gn~~~~~~D~Ga~~~~~~~~~~l~~L~~eLG- 126 (722)
+||+|||||+|||++|+.|++.|.+|+|+|+++++||+|.+....+. ...+.|+|+++..... +..++.++-
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~~~~g~------~~~~~G~h~f~t~~~~-v~~~~~~~~~ 74 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEVDETI------LFHQYGPHIFHTNNQY-VWDYISPFFE 74 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeeecCCCc------eEEeecceeEecCcHH-HHHHHHhhcc
Confidence 79999999999999999999999999999999999999998765443 3469999999765433 334444432
Q ss_pred CCeeeecCCcceEecCCcccChhhhHH-HHHHHHHH-HHHH-HHHHHHhhc--cccCCCHHHHHHHHHHHhccCCCHHHH
Q 004944 127 SLLHKVRDKCPLYRLDGNSVDPEIDMK-VEADFNRL-LDKA-SRLRQLMGE--VAMDVSLGSALETFWRVYWDSGNAEAM 201 (722)
Q Consensus 127 l~~~~~~~~~~~~~~~G~~~~~~~~~~-~~~~~~~l-l~~~-~~~~~~~~~--~~~~~s~~~~l~~~~~~~~~~~~~~~~ 201 (722)
.. ... .......+|+.++.|.... +...+... ...+ ..+...... ......+.++.+.....++..+.+.
T Consensus 75 ~~--~~~-~~~~~~~~g~~~~~P~~~~~i~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~G~~lye~-- 149 (377)
T TIGR00031 75 LN--NYQ-HRVLALYNNLDLTLPFNFNQFRKLLGVKDAQELQNFFNAQFKYGDHVPLEELQEIADPDIQLLYQFLYQK-- 149 (377)
T ss_pred cc--cee-EEEEEEECCeEEccCCCHHHHHHhcccchHHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHHHHHHHHH--
Confidence 22 111 2245677888888777533 22222111 0111 111111110 0011344454433333222211111
Q ss_pred HHHHHHHHhhhhccchhhHHHHHHhh-------ccCCCCCCCCCeeeeCCChHHHHHHHHHc--CCcccCceEEEEEecC
Q 004944 202 NLFNWHLANLEYANASLLSKLSLAFW-------DQDDPYDMGGDHCFLPGGNGRLVQALVEN--VPILYEKTVHTIRYGS 272 (722)
Q Consensus 202 ~~~~~~~~~~~~~~~~~l~~l~~~~~-------~~~~~~~~~g~~~~~~gG~~~L~~aLa~~--l~I~ln~~V~~I~~~~ 272 (722)
++..+..-.+ +-..+.++..+. ...+.+........|++|..+++++|.+. ++|++|+.+..++..+
T Consensus 150 -ff~~Yt~K~W---g~~p~el~~~~~~RvP~~~~~d~~yf~d~~q~~P~~Gyt~~~~~ml~~~~i~v~l~~~~~~~~~~~ 225 (377)
T TIGR00031 150 -VYKPYTVKQW---GLPAEEIDPFVIGRVPVVLSEDSSYFPDRYQGLPKGGYTKLFEKMLDHPLIDVKLNCHINLLKDKD 225 (377)
T ss_pred -hccccCceee---CCChHHCCHHHeEecceEecCCCCcccccccccccccHHHHHHHHHhcCCCEEEeCCccceeeccc
Confidence 1111100001 111122222111 11222323334567899999999999965 8999999888887655
Q ss_pred CcEEEEECCEEEEeCEEEEcCChhhhh
Q 004944 273 DGVQVLAGSQVFEGDMVLCTVPLGVLK 299 (722)
Q Consensus 273 ~~v~V~~~G~~~~AD~VI~AvP~~~l~ 299 (722)
++|.+. ++.+. +.||.|.|++.+-
T Consensus 226 ~~~~~~--~~~~~-~~vi~Tg~id~~f 249 (377)
T TIGR00031 226 SQLHFA--NKAIR-KPVIYTGLIDQLF 249 (377)
T ss_pred cceeec--ccccc-CcEEEecCchHHH
Confidence 545442 22333 8899999998774
No 34
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=99.58 E-value=1.3e-13 Score=153.78 Aligned_cols=240 Identities=15% Similarity=0.168 Sum_probs=138.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeeeeeecCCC---C----------CCCcceEeeccceEEcC
Q 004944 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGG---A----------GNRISASADLGGSVLTG 112 (722)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~T~~~~g~---~----------gn~~~~~~D~Ga~~~~~ 112 (722)
+.+||||||+|++|+.+|..|+++|++|+++|++++.||+.+|.+.... . |....+.+|+.++++..
T Consensus 3 ~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~l~~l~~~f~~~~~~~~~~~~~r~~~iDL~Pk~l~~ 82 (443)
T PTZ00363 3 ETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPGETPPESLGRNRDWNVDLIPKFIMA 82 (443)
T ss_pred CcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccccHHHHHHhhcccCCCchhcccccccccccCCeeeec
Confidence 3599999999999999999999999999999999999999999743320 0 01123456777776654
Q ss_pred CCCcHHHHHHHHhCCCeeeec--CCcceEe-cCCcccChhhhH-----------HHHHHHHHHHHHHHHHHHH----hhc
Q 004944 113 TLGNPLGILAKQLGSLLHKVR--DKCPLYR-LDGNSVDPEIDM-----------KVEADFNRLLDKASRLRQL----MGE 174 (722)
Q Consensus 113 ~~~~~l~~L~~eLGl~~~~~~--~~~~~~~-~~G~~~~~~~~~-----------~~~~~~~~ll~~~~~~~~~----~~~ 174 (722)
. ..+..++.+.++..+... -...+.+ .+|+....|... .-+..+.+++..+..+... ...
T Consensus 83 ~--G~lv~lL~~s~v~ryleF~~l~g~~v~~~~g~~~~vP~s~~~~~~s~ll~l~eKr~l~kfl~~v~~~~~~~~~~~~~ 160 (443)
T PTZ00363 83 S--GELVKILLHTDVTRYLEFKVIDGSYVYQKEGKIHKVPATDMEALSSPLMGFFEKNRCKNFLQYVSNYDENDPETHKG 160 (443)
T ss_pred C--ChHHHHHhhcCccceeeeEEeceEEEEecCCeEEECCCCHHHHhhCCCcchhhHHHHHHHHHHHHhhccCChhhhcc
Confidence 3 345567777776543211 1122333 566654433211 1112233333333222110 000
Q ss_pred c-ccCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhh---hccchhhHHHH-HH-hhccCCCCCCCCCeeeeCCChHH
Q 004944 175 V-AMDVSLGSALETFWRVYWDSGNAEAMNLFNWHLANLE---YANASLLSKLS-LA-FWDQDDPYDMGGDHCFLPGGNGR 248 (722)
Q Consensus 175 ~-~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~l~-~~-~~~~~~~~~~~g~~~~~~gG~~~ 248 (722)
. .+..++.++++.+ ..++...+++...+.... +........+. .. +......+.. ..+.++.+|++.
T Consensus 161 ~~~d~~T~~d~L~~~------~ls~~~~d~i~~~ial~~~~~~~~~pa~~tl~ri~~y~~S~~~~g~-~p~~yp~gG~g~ 233 (443)
T PTZ00363 161 LNLKTMTMAQLYKKF------GLEDNTIDFVGHAVALYTNDDYLNKPAIETVMRIKLYMDSLSRYGK-SPFIYPLYGLGG 233 (443)
T ss_pred cCcccCCHHHHHHHh------CCCHHHHHHHHHHHHhhcccccccCCHHHHHHHHHHHHHHHhhccC-CcceeeCCCHHH
Confidence 0 1235666655433 245555555443333221 11111111111 11 1110011111 235778999999
Q ss_pred HHHHHHH-----cCCcccCceEEEEEecCCc--EEEEE-CCEEEEeCEEEEcCC
Q 004944 249 LVQALVE-----NVPILYEKTVHTIRYGSDG--VQVLA-GSQVFEGDMVLCTVP 294 (722)
Q Consensus 249 L~~aLa~-----~l~I~ln~~V~~I~~~~~~--v~V~~-~G~~~~AD~VI~AvP 294 (722)
|+++|++ |..++++++|++|..++++ +.|++ +|++++|+.||+...
T Consensus 234 L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s 287 (443)
T PTZ00363 234 LPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPS 287 (443)
T ss_pred HHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcc
Confidence 9999974 4569999999999987644 45666 888999999999543
No 35
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=99.50 E-value=2.6e-14 Score=117.17 Aligned_cols=67 Identities=40% Similarity=0.548 Sum_probs=57.8
Q ss_pred EECccHHHHHHHHHHHHCCCcEEEEecCCCcceeeeeeecCCCCCCCcceEeeccceEEcCC-CCcHHHHHHHHh
Q 004944 52 VIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGT-LGNPLGILAKQL 125 (722)
Q Consensus 52 IVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~T~~~~g~~gn~~~~~~D~Ga~~~~~~-~~~~l~~L~~eL 125 (722)
|||||+|||+||++|+++|++|+|||+++++||++.+...++. .+|.|++++... ....+..++++|
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~g~-------~~d~g~~~~~~~~~~~~~~~l~~~L 68 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIPGY-------RFDLGAHYFFPPDDYPNLFRLLREL 68 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEETTE-------EEETSS-SEEETTSCHHHHHHHHTT
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEECCE-------EEeeccEEEeCCCCchHHHHHHcCC
Confidence 8999999999999999999999999999999999999998765 999999998774 345677777765
No 36
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.46 E-value=1.3e-11 Score=139.17 Aligned_cols=72 Identities=29% Similarity=0.321 Sum_probs=55.6
Q ss_pred CCcEEEECccHHHHHHHHHHHHC----CCcEEEEecCCCcceeeeeeecCCCCCCCcceEeeccceEEcCCCCcHHHHHH
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRL----GFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILA 122 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~----G~~V~VLEa~~r~GGr~~T~~~~g~~gn~~~~~~D~Ga~~~~~~~~~~l~~L~ 122 (722)
+.+|+|||||+|||+||++|++. |++|+|||+++.+||++.++..... ++.++.|.+. ...+ ..+..++
T Consensus 22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~~~-----Gy~~~~G~~~-~~~y-~~l~~ll 94 (576)
T PRK13977 22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNPEK-----GYVARGGREM-ENHF-ECLWDLF 94 (576)
T ss_pred CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCcccccC-----CEEEECCCCc-cchH-HHHHHHH
Confidence 48999999999999999999996 6799999999999999988653211 2478887664 3333 3466677
Q ss_pred HHh
Q 004944 123 KQL 125 (722)
Q Consensus 123 ~eL 125 (722)
+++
T Consensus 95 ~~i 97 (576)
T PRK13977 95 RSI 97 (576)
T ss_pred Hhc
Confidence 665
No 37
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.42 E-value=4.3e-12 Score=134.86 Aligned_cols=56 Identities=16% Similarity=0.261 Sum_probs=47.8
Q ss_pred eeeeC-CChHHHHHHHHH-----cCCcccCceEEEEEecCCcEEEEE-CCEEEEeCEEEEcCC
Q 004944 239 HCFLP-GGNGRLVQALVE-----NVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVP 294 (722)
Q Consensus 239 ~~~~~-gG~~~L~~aLa~-----~l~I~ln~~V~~I~~~~~~v~V~~-~G~~~~AD~VI~AvP 294 (722)
.+++. ...+.|+++|.+ +++|+++++|.+|..++.+..+.+ +|+++.||.+|+|+.
T Consensus 102 r~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAtG 164 (408)
T COG2081 102 RMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATG 164 (408)
T ss_pred eecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEecC
Confidence 34555 788999998865 677999999999999998889988 777999999999986
No 38
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=99.24 E-value=2.4e-11 Score=124.80 Aligned_cols=230 Identities=15% Similarity=0.175 Sum_probs=126.3
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeeeeeecCCCCCCCcceEeeccceEEcCCCCcHHHHHHHHhC
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLG 126 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~T~~~~g~~gn~~~~~~D~Ga~~~~~~~~~~l~~L~~eLG 126 (722)
++|++|||||++|+..|..|++.|++|+|+|+++++||.|++...+.. +-.+.-.|+|.|+..... +...+..+-
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~t----GIlvHkYGpHIFHT~~~~-Vwdyv~~F~ 75 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQT----GILVHKYGPHIFHTDNKR-VWDYVNQFT 75 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCCC----CeEEeeccCceeecCchH-HHHHHhhhh
Confidence 379999999999999999999999999999999999999999887522 135788999999866543 333443321
Q ss_pred CCeeeecCCcceEecCCcccChhhhHHHHHHHHHHH---HHHHHHHHHhhc-c--ccCCCHHHHHHHHHHHhccCCCHHH
Q 004944 127 SLLHKVRDKCPLYRLDGNSVDPEIDMKVEADFNRLL---DKASRLRQLMGE-V--AMDVSLGSALETFWRVYWDSGNAEA 200 (722)
Q Consensus 127 l~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~ll---~~~~~~~~~~~~-~--~~~~s~~~~l~~~~~~~~~~~~~~~ 200 (722)
.-. ....+.+-..+|..++.|++......+.... +.+..+...... . .+...+++.. .+..+..+ .
T Consensus 76 e~~--~Y~hrVla~~ng~~~~lP~nl~ti~ql~G~~~~p~~a~~~i~~~~~~~~~~~~q~~ee~a---is~vg~~L---Y 147 (374)
T COG0562 76 EFN--PYQHRVLALVNGQLYPLPFNLNTINQLFGKNFTPDEARKFIEEQAAEIDIAEPQNLEEQA---ISLVGRDL---Y 147 (374)
T ss_pred hhh--hhccceeEEECCeeeeccccHHHHHHHhCccCCHHHHHHHHHHhhccccccchhhhhhHH---HHHHHHHH---H
Confidence 110 0122345567888888887764322221100 112222221110 0 0111111110 00000000 0
Q ss_pred HHHHHHHH-Hhhhhc----cchhhHHHHHHhhccCCCCCCCCCeeeeCCChHHHHHHHHH--cCCcccCceEEEEEecCC
Q 004944 201 MNLFNWHL-ANLEYA----NASLLSKLSLAFWDQDDPYDMGGDHCFLPGGNGRLVQALVE--NVPILYEKTVHTIRYGSD 273 (722)
Q Consensus 201 ~~~~~~~~-~~~~~~----~~~~l~~l~~~~~~~~~~~~~~g~~~~~~gG~~~L~~aLa~--~l~I~ln~~V~~I~~~~~ 273 (722)
..++..+. ..+... .++.+..+...+ ...+.+...--...|++|.-.+++.|++ .+.|++||.-..|.....
T Consensus 148 ~~f~kgYT~KQWG~~p~eLpasvi~RvPVr~-~~dn~YF~d~yQGlP~~GYT~~~~kMl~hp~I~V~Lntd~~~~~~~~~ 226 (374)
T COG0562 148 EAFFKGYTEKQWGLDPKELPASVIKRLPVRL-NFDNRYFSDTYQGLPKDGYTAMFEKMLDHPNIDVRLNTDFFDVKDQLR 226 (374)
T ss_pred HHHhccccHHHhCCChHHCCHHHhcccceEE-cccCcccCcccccCccccHHHHHHHHhcCCCceEEecCcHHHHhhhhc
Confidence 00110000 011111 111111111111 1112222222345688999999999998 889999998877765432
Q ss_pred cEEEEECCEEEEeCEEEEcCChhhhh
Q 004944 274 GVQVLAGSQVFEGDMVLCTVPLGVLK 299 (722)
Q Consensus 274 ~v~V~~~G~~~~AD~VI~AvP~~~l~ 299 (722)
+ +.+..||.|-|+..+-
T Consensus 227 ~---------~~~~~VvytG~iD~~F 243 (374)
T COG0562 227 A---------IPFAPVVYTGPIDAYF 243 (374)
T ss_pred c---------cCCCceEEecchHhhh
Confidence 1 3455899999988775
No 39
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.22 E-value=1.1e-09 Score=122.91 Aligned_cols=38 Identities=42% Similarity=0.592 Sum_probs=36.0
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcce
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GG 84 (722)
++||+|||||+||++||+.|+++|++|+|||+.+.+|.
T Consensus 5 ~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~ 42 (428)
T PRK10157 5 IFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGA 42 (428)
T ss_pred cCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCC
Confidence 59999999999999999999999999999999988875
No 40
>PRK10015 oxidoreductase; Provisional
Probab=99.15 E-value=7.7e-09 Score=116.00 Aligned_cols=38 Identities=42% Similarity=0.659 Sum_probs=35.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcc
Q 004944 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAG 83 (722)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~G 83 (722)
+++||||||||+||++||+.|+++|++|+|+|+.+.+|
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g 41 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAG 41 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence 35999999999999999999999999999999988776
No 41
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.14 E-value=1.2e-08 Score=113.93 Aligned_cols=36 Identities=28% Similarity=0.580 Sum_probs=33.9
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCc
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~ 82 (722)
.+||+|||||++||++|..|+++|++|+|||+++.+
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 53 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE 53 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence 499999999999999999999999999999998754
No 42
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.14 E-value=6.6e-09 Score=115.44 Aligned_cols=42 Identities=38% Similarity=0.608 Sum_probs=38.7
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeeee
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYT 88 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~T 88 (722)
++||+|||||+||++||+.|+++|++|+|||+.+.+|-+..+
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~ 44 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCC 44 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccc
Confidence 599999999999999999999999999999999999965544
No 43
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.14 E-value=6.8e-09 Score=109.76 Aligned_cols=37 Identities=41% Similarity=0.520 Sum_probs=34.4
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcce
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GG 84 (722)
+||+|||||++||++|+.|++.|++|+|+|+...++.
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~ 37 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRY 37 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc
Confidence 6899999999999999999999999999999887653
No 44
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.11 E-value=4.7e-10 Score=124.01 Aligned_cols=56 Identities=27% Similarity=0.369 Sum_probs=37.8
Q ss_pred eeeC-CChHHHHHHHHH-----cCCcccCceEEEEEecCCc-EEEEE-CCEEEEeCEEEEcCCh
Q 004944 240 CFLP-GGNGRLVQALVE-----NVPILYEKTVHTIRYGSDG-VQVLA-GSQVFEGDMVLCTVPL 295 (722)
Q Consensus 240 ~~~~-gG~~~L~~aLa~-----~l~I~ln~~V~~I~~~~~~-v~V~~-~G~~~~AD~VI~AvP~ 295 (722)
++|. .-...+++.|.+ +++|+++++|++|..++++ +.|.+ +++++.||.||+|+.-
T Consensus 101 ~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtGG 164 (409)
T PF03486_consen 101 VFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATGG 164 (409)
T ss_dssp EEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE----
T ss_pred ECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecCC
Confidence 3443 346677777643 6789999999999998887 88888 9999999999999763
No 45
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.11 E-value=8.8e-09 Score=113.61 Aligned_cols=51 Identities=20% Similarity=0.183 Sum_probs=39.7
Q ss_pred HHHHHHHHH-c-CCcccCceEEEEEecCCcEEEEE-CCEEEEeCEEEEcCChhh
Q 004944 247 GRLVQALVE-N-VPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGV 297 (722)
Q Consensus 247 ~~L~~aLa~-~-l~I~ln~~V~~I~~~~~~v~V~~-~G~~~~AD~VI~AvP~~~ 297 (722)
..|.+.+.+ + ++|+++++|++|..+++++.|++ +|+++++|.||.|.....
T Consensus 110 ~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG~~S 163 (385)
T TIGR01988 110 QALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADGANS 163 (385)
T ss_pred HHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCCCCC
Confidence 334444433 3 67999999999999888888887 888899999999887553
No 46
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.09 E-value=3e-08 Score=109.91 Aligned_cols=192 Identities=14% Similarity=0.148 Sum_probs=100.5
Q ss_pred CCcccCceEEEEEecCCcEEEEE--CCEEEEeCEEEEcCChhhhhcCCcccCCCCCHHHHHHHHhcCCC-ceeEEEEEcC
Q 004944 257 VPILYEKTVHTIRYGSDGVQVLA--GSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDAIKRLGYG-LLNKVAMLFP 333 (722)
Q Consensus 257 l~I~ln~~V~~I~~~~~~v~V~~--~G~~~~AD~VI~AvP~~~l~~~~i~~~p~Lp~~~~~ai~~l~~~-~~~kV~l~f~ 333 (722)
++++++++|+.++.+++.++++. +|++++||.||-|=..+-..+..+. .+.. ....|. ....+....+
T Consensus 120 v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~~S~vR~~~~-~~~~--------~~~~y~~~~l~~~~~~~ 190 (387)
T COG0654 120 VTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGANSAVRRAAG-IAEF--------SGRDYGQTALVANVEPE 190 (387)
T ss_pred cEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCCCchHHHHhcC-CCCc--------cCCCCCceEEEEEeecC
Confidence 68999999999999999888766 6889999999999887655542222 1111 111222 1222222222
Q ss_pred CCcccCCCCCceeeecCCCCCcceEEEeeccccCCCcEEEEEecchhhhhhcCCCHHHHHHHHHHHHHhhcCCCCCCCCC
Q 004944 334 YVFWETDLDTFGHLTDDSSSRGEFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTKVLQILKGIYEPKGINVPE 413 (722)
Q Consensus 334 ~~~w~~~~~~~g~l~~~~~~~~~~~~~~~~~~p~g~~vl~~~v~g~~a~~~~~ls~eel~~~vl~~L~~i~~~~~~~v~~ 413 (722)
.+. ....+.+... .+. +.+++.. +....+..+.....+.....+++++. +..|.+.++.. .+
T Consensus 191 ~~~---~~~~~~~~~~----~~~-~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~---~~- 252 (387)
T COG0654 191 EPH---EGRAGERFTH----AGP-FALLPLP--DNRSSVVWSLPPGPAEDLQGLSDEEF----LRELQRRLGER---DP- 252 (387)
T ss_pred CCC---CCeEEEEecC----CCc-eEEEecC--CCceeEEEECChhhHHHHhcCCHHHH----HHHHHHhcCcc---cc-
Confidence 111 1111111111 111 1222211 12333444444455556666777665 55566666532 11
Q ss_pred CceEEEecCCCCCCCCcccCCCCCCCCCccHHHHhcccCCCcEEEcccccccccC---ccchHHHHHHHHHHHHHHHHHh
Q 004944 414 PIQTVCTRWGGDPFSLGSYSNVAVGASGDDYDIMAESVGDGRLFFAGEATIRRYP---ATMHGAFLSGLRETAKMAHCAN 490 (722)
Q Consensus 414 p~~~~~~rW~~~p~~~G~y~~~~pG~~~~~~~~l~~pv~~~~L~fAGd~ts~~~~---g~~eGAi~SG~~AA~~Il~~l~ 490 (722)
........|.. .|. ......+++..+|++++||+.+.-+| .+++-|+.-+..-|..+.+...
T Consensus 253 ~~~~~~~~~~~------~~p---------l~~~~a~~~~~~Rv~LiGDAAH~~~P~~gQG~nlgl~Da~~La~~L~~~~~ 317 (387)
T COG0654 253 LGRVTLVSSRS------AFP---------LSLRVAERYRRGRVVLIGDAAHAMHPLAGQGANLALEDAAALAEALAAAPR 317 (387)
T ss_pred cceEEEccccc------ccc---------ccchhhhheecCcEEEEeeccccCCCccccchhhhhhhHHHHHHHHHHHhh
Confidence 11112222211 111 11122333334889999999986444 2777777777777777776654
No 47
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.08 E-value=5.2e-08 Score=108.73 Aligned_cols=37 Identities=35% Similarity=0.600 Sum_probs=34.7
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcce
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GG 84 (722)
+||+|||||++|+++|++|+++|++|+|||+++.+|+
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~~~ 38 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYAAM 38 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCc
Confidence 6999999999999999999999999999999887764
No 48
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.08 E-value=2.3e-08 Score=110.88 Aligned_cols=42 Identities=12% Similarity=0.169 Sum_probs=36.8
Q ss_pred cCCcccCceEEEEEecCCcEEEEE-CCEEEEeCEEEEcCChhh
Q 004944 256 NVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGV 297 (722)
Q Consensus 256 ~l~I~ln~~V~~I~~~~~~v~V~~-~G~~~~AD~VI~AvP~~~ 297 (722)
+++|+++++|++|..++++++|++ +|+++++|.||.|.....
T Consensus 127 gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S 169 (392)
T PRK08773 127 GVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGAAS 169 (392)
T ss_pred CCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecCCCc
Confidence 678999999999999888888887 778899999999987653
No 49
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.07 E-value=4.3e-08 Score=108.11 Aligned_cols=37 Identities=32% Similarity=0.458 Sum_probs=33.8
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcce
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GG 84 (722)
+||+|||||++|+++||+|++.|++|+|+|+.+..++
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~~~~ 37 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDLPHS 37 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCC
Confidence 5899999999999999999999999999999776543
No 50
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.06 E-value=3.1e-09 Score=115.29 Aligned_cols=60 Identities=27% Similarity=0.253 Sum_probs=44.1
Q ss_pred eeeeCCC---hHHHHHHHHH-----cCCcccCceEEEEEecCCcEE-EEECCEEEEeCEEEEcCChhhh
Q 004944 239 HCFLPGG---NGRLVQALVE-----NVPILYEKTVHTIRYGSDGVQ-VLAGSQVFEGDMVLCTVPLGVL 298 (722)
Q Consensus 239 ~~~~~gG---~~~L~~aLa~-----~l~I~ln~~V~~I~~~~~~v~-V~~~G~~~~AD~VI~AvP~~~l 298 (722)
.+.+.+| ...++++|.+ |++|+.+++|++|..++++|+ |.+++..+.||.||+|+.+...
T Consensus 136 ~~~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~i~ad~vV~a~G~~s~ 204 (358)
T PF01266_consen 136 VFFPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGEIRADRVVLAAGAWSP 204 (358)
T ss_dssp EEETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEEEEECEEEE--GGGHH
T ss_pred hcccccccccccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccccccceeEecccccce
Confidence 3455556 5667666654 678999999999999999998 8884445999999999976543
No 51
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.06 E-value=1.3e-07 Score=104.16 Aligned_cols=43 Identities=21% Similarity=0.373 Sum_probs=36.4
Q ss_pred HcCCcccCceEEEEEecCCcEEEEECCEEEEeCEEEEcCChhh
Q 004944 255 ENVPILYEKTVHTIRYGSDGVQVLAGSQVFEGDMVLCTVPLGV 297 (722)
Q Consensus 255 ~~l~I~ln~~V~~I~~~~~~v~V~~~G~~~~AD~VI~AvP~~~ 297 (722)
.+++|+++++|++|..+++++.|.+++.++.+|.||+|+....
T Consensus 162 ~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~a~~vV~A~G~~~ 204 (376)
T PRK11259 162 AGAELLFNEPVTAIEADGDGVTVTTADGTYEAKKLVVSAGAWV 204 (376)
T ss_pred CCCEEECCCEEEEEEeeCCeEEEEeCCCEEEeeEEEEecCcch
Confidence 4788999999999999888888888444899999999998653
No 52
>PRK09126 hypothetical protein; Provisional
Probab=99.03 E-value=1.9e-08 Score=111.52 Aligned_cols=43 Identities=16% Similarity=0.234 Sum_probs=37.2
Q ss_pred cCCcccCceEEEEEecCCcEEEEE-CCEEEEeCEEEEcCChhhh
Q 004944 256 NVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVL 298 (722)
Q Consensus 256 ~l~I~ln~~V~~I~~~~~~v~V~~-~G~~~~AD~VI~AvP~~~l 298 (722)
+++|+++++|++++.+++++.|++ +|++++||.||.|......
T Consensus 125 g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 168 (392)
T PRK09126 125 GIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADSRFSA 168 (392)
T ss_pred CcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEeCCCCch
Confidence 678999999999998888888877 7889999999999986543
No 53
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.02 E-value=3.8e-08 Score=108.92 Aligned_cols=36 Identities=39% Similarity=0.472 Sum_probs=33.7
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCc
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~ 82 (722)
.+||+|||||++||++|+.|+++|++|+|+|+.+.+
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~ 42 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPY 42 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence 489999999999999999999999999999998754
No 54
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.00 E-value=6.5e-08 Score=106.80 Aligned_cols=51 Identities=16% Similarity=0.178 Sum_probs=41.2
Q ss_pred HHHHHHHHH--cCCcccCceEEEEEecCCcEEEEE-CCEEEEeCEEEEcCChhh
Q 004944 247 GRLVQALVE--NVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGV 297 (722)
Q Consensus 247 ~~L~~aLa~--~l~I~ln~~V~~I~~~~~~v~V~~-~G~~~~AD~VI~AvP~~~ 297 (722)
..|.+.+.+ +++++++++|++|..++++++|++ +|++++||.||.|.+...
T Consensus 109 ~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S 162 (382)
T TIGR01984 109 QALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGANS 162 (382)
T ss_pred HHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCCCh
Confidence 344444444 678999999999998888888887 778899999999998754
No 55
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.99 E-value=4.7e-08 Score=108.37 Aligned_cols=43 Identities=12% Similarity=0.220 Sum_probs=37.0
Q ss_pred cCCcccCceEEEEEecCCcEEEEE-CCEEEEeCEEEEcCChhhh
Q 004944 256 NVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVL 298 (722)
Q Consensus 256 ~l~I~ln~~V~~I~~~~~~v~V~~-~G~~~~AD~VI~AvP~~~l 298 (722)
+++|+++++|+++..+++++.|++ ++++++||.||.|......
T Consensus 127 gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 170 (391)
T PRK08020 127 NVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADGANSQ 170 (391)
T ss_pred CcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEEeCCCCch
Confidence 677899999999998888888887 7779999999999886544
No 56
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.98 E-value=4.1e-08 Score=109.37 Aligned_cols=53 Identities=11% Similarity=0.192 Sum_probs=41.2
Q ss_pred HHHHHHHH-cCCcccCceEEEEEecCCcEEEEE-CCEEEEeCEEEEcCChhhhhc
Q 004944 248 RLVQALVE-NVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVLKS 300 (722)
Q Consensus 248 ~L~~aLa~-~l~I~ln~~V~~I~~~~~~v~V~~-~G~~~~AD~VI~AvP~~~l~~ 300 (722)
.|.+.+.+ +++|+++++|++|+.++++|.|++ +|++++||.||.|.......+
T Consensus 117 ~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S~vR 171 (405)
T PRK05714 117 ALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANSAVR 171 (405)
T ss_pred HHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCchhH
Confidence 33344433 577999999999999888898887 778899999999988755443
No 57
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.98 E-value=5.1e-08 Score=108.45 Aligned_cols=49 Identities=14% Similarity=0.189 Sum_probs=39.4
Q ss_pred HHHHHHH-cCCcccCceEEEEEecCCcEEEEE-CCEEEEeCEEEEcCChhh
Q 004944 249 LVQALVE-NVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGV 297 (722)
Q Consensus 249 L~~aLa~-~l~I~ln~~V~~I~~~~~~v~V~~-~G~~~~AD~VI~AvP~~~ 297 (722)
|.+.+.+ +++|+++++|++|..+++++.|++ +|++++||.||.|.....
T Consensus 117 L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~S 167 (403)
T PRK07333 117 LRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGARS 167 (403)
T ss_pred HHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCCh
Confidence 3343333 678999999999999888888887 788899999999987543
No 58
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.94 E-value=8.1e-09 Score=114.65 Aligned_cols=41 Identities=32% Similarity=0.488 Sum_probs=37.0
Q ss_pred CCcEEEECccHHHHHHHHHHHHC--CCcEEEEecCCCcceeee
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRL--GFRVTVLEGRKRAGGRVY 87 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~--G~~V~VLEa~~r~GGr~~ 87 (722)
++||+|||||++|+++||+|++. |++|+|||+...+|+.+.
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~~~aS 44 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPARHQT 44 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCccccccc
Confidence 38999999999999999999999 999999999887876543
No 59
>PRK06847 hypothetical protein; Provisional
Probab=98.93 E-value=2.7e-08 Score=109.48 Aligned_cols=43 Identities=23% Similarity=0.152 Sum_probs=37.5
Q ss_pred cCCcccCceEEEEEecCCcEEEEE-CCEEEEeCEEEEcCChhhh
Q 004944 256 NVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVL 298 (722)
Q Consensus 256 ~l~I~ln~~V~~I~~~~~~v~V~~-~G~~~~AD~VI~AvP~~~l 298 (722)
+++|+++++|++|..+++++.|++ +|+++++|.||.|......
T Consensus 121 gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~s~ 164 (375)
T PRK06847 121 GADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLYSK 164 (375)
T ss_pred CCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCCcc
Confidence 678999999999998888888887 8889999999999986543
No 60
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.93 E-value=2.1e-08 Score=113.73 Aligned_cols=38 Identities=29% Similarity=0.472 Sum_probs=33.8
Q ss_pred CCCCcEEEECccHHHHHHHHHHHHC--CCcEEEEecCCCcc
Q 004944 45 SNKLRVLVIGAGLAGLAAARQLMRL--GFRVTVLEGRKRAG 83 (722)
Q Consensus 45 ~~~~dVvIVGAGiAGLsAA~~Lak~--G~~V~VLEa~~r~G 83 (722)
+.++||+|||||++||++||+|+++ |.+|+|||+. ++|
T Consensus 22 ~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~-~~g 61 (460)
T TIGR03329 22 DTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEAD-LCG 61 (460)
T ss_pred CceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCC-ccc
Confidence 4458999999999999999999998 8999999995 454
No 61
>PRK06184 hypothetical protein; Provisional
Probab=98.93 E-value=6.9e-08 Score=110.74 Aligned_cols=36 Identities=33% Similarity=0.524 Sum_probs=33.8
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCc
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~ 82 (722)
++||+|||||++||++|..|++.|++|+|||+++.+
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~ 38 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEP 38 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 489999999999999999999999999999998755
No 62
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.92 E-value=2.5e-07 Score=102.53 Aligned_cols=42 Identities=12% Similarity=0.179 Sum_probs=36.3
Q ss_pred cCCcccCceEEEEEecCCcEEEEE-CCEEEEeCEEEEcCChhh
Q 004944 256 NVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGV 297 (722)
Q Consensus 256 ~l~I~ln~~V~~I~~~~~~v~V~~-~G~~~~AD~VI~AvP~~~ 297 (722)
+++|+++++|++|..+++++.|++ ++.++++|.||.|.....
T Consensus 127 g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S 169 (395)
T PRK05732 127 GVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHS 169 (395)
T ss_pred CcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCh
Confidence 577999999999998888888887 777899999999987653
No 63
>PRK08013 oxidoreductase; Provisional
Probab=98.92 E-value=1.3e-07 Score=105.22 Aligned_cols=53 Identities=9% Similarity=0.174 Sum_probs=42.0
Q ss_pred HHHHHHHH--cCCcccCceEEEEEecCCcEEEEE-CCEEEEeCEEEEcCChhhhhc
Q 004944 248 RLVQALVE--NVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVLKS 300 (722)
Q Consensus 248 ~L~~aLa~--~l~I~ln~~V~~I~~~~~~v~V~~-~G~~~~AD~VI~AvP~~~l~~ 300 (722)
.|.+++.+ +++|+++++|++|+.+++++.|+. +|++++||.||-|-...-..+
T Consensus 116 ~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S~vR 171 (400)
T PRK08013 116 ALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVGADGANSWLR 171 (400)
T ss_pred HHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEEeCCCCcHHH
Confidence 34444443 578999999999998888888887 888999999999988665443
No 64
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.91 E-value=2.6e-07 Score=102.27 Aligned_cols=37 Identities=38% Similarity=0.600 Sum_probs=34.2
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcc
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAG 83 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~G 83 (722)
.+||+|||||++||++|+.|++.|++|+|+|+.+.+.
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~ 41 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPR 41 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCcc
Confidence 4899999999999999999999999999999987653
No 65
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.91 E-value=2.9e-08 Score=109.09 Aligned_cols=42 Identities=26% Similarity=0.428 Sum_probs=38.7
Q ss_pred CCcEEEECccHHHHHHHHHHHHCC--CcEEEEecCCCcceeeee
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLG--FRVTVLEGRKRAGGRVYT 88 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G--~~V~VLEa~~r~GGr~~T 88 (722)
++||+||||||.|+++|++|++.+ ++|+|+|+.+.+|-...+
T Consensus 3 ~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~ 46 (429)
T COG0579 3 DYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSS 46 (429)
T ss_pred ceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCcccccccc
Confidence 589999999999999999999998 999999999999866554
No 66
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.90 E-value=5.6e-08 Score=108.35 Aligned_cols=51 Identities=16% Similarity=0.233 Sum_probs=40.9
Q ss_pred HHHHHHHH--cCCcccCceEEEEEecCCcEEEEE-CCEEEEeCEEEEcCChhhh
Q 004944 248 RLVQALVE--NVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVL 298 (722)
Q Consensus 248 ~L~~aLa~--~l~I~ln~~V~~I~~~~~~v~V~~-~G~~~~AD~VI~AvP~~~l 298 (722)
.|.+++.+ +++|+++++|++|..+++++.|+. +|++++||.||.|-.....
T Consensus 116 ~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~S~ 169 (405)
T PRK08850 116 ALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGANSW 169 (405)
T ss_pred HHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCCCh
Confidence 34444443 578999999999998888888888 8889999999999986543
No 67
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.88 E-value=2.5e-07 Score=102.37 Aligned_cols=45 Identities=11% Similarity=0.226 Sum_probs=38.8
Q ss_pred cCCcccCceEEEEEecCCcEEEEE-CCEEEEeCEEEEcCChhhhhc
Q 004944 256 NVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVLKS 300 (722)
Q Consensus 256 ~l~I~ln~~V~~I~~~~~~v~V~~-~G~~~~AD~VI~AvP~~~l~~ 300 (722)
+++|+.+++|++++.++++++|+. +|.+++||.||.|.......+
T Consensus 125 ~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgADG~~S~vR 170 (384)
T PRK08849 125 NLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGADGANSQVR 170 (384)
T ss_pred CeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEecCCCchhH
Confidence 567999999999999988898888 888999999999998765443
No 68
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.87 E-value=2.7e-09 Score=104.53 Aligned_cols=70 Identities=26% Similarity=0.490 Sum_probs=55.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeeeeeecCCCCCCCcceEeeccceEEcCC-CCcHHHHHHHHhC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGT-LGNPLGILAKQLG 126 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~T~~~~g~~gn~~~~~~D~Ga~~~~~~-~~~~l~~L~~eLG 126 (722)
.||+|||||.|||+|||+|+++|.+|+|||++..+||-++ .|++.|+.. -..+...+++++|
T Consensus 31 sDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w-----------------~GGmlf~~iVv~~~a~~iL~e~g 93 (262)
T COG1635 31 SDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIW-----------------GGGMLFNKIVVREEADEILDEFG 93 (262)
T ss_pred ccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCccc-----------------ccccccceeeecchHHHHHHHhC
Confidence 7999999999999999999999999999999999998654 223333321 1356677999999
Q ss_pred CCeeeecC
Q 004944 127 SLLHKVRD 134 (722)
Q Consensus 127 l~~~~~~~ 134 (722)
++.....+
T Consensus 94 I~ye~~e~ 101 (262)
T COG1635 94 IRYEEEED 101 (262)
T ss_pred CcceecCC
Confidence 99766543
No 69
>PRK07190 hypothetical protein; Provisional
Probab=98.87 E-value=4.2e-07 Score=103.60 Aligned_cols=45 Identities=9% Similarity=0.084 Sum_probs=38.7
Q ss_pred cCCcccCceEEEEEecCCcEEEEE-CCEEEEeCEEEEcCChhhhhc
Q 004944 256 NVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVLKS 300 (722)
Q Consensus 256 ~l~I~ln~~V~~I~~~~~~v~V~~-~G~~~~AD~VI~AvP~~~l~~ 300 (722)
+++|+++++|++|..+++++.++. +|++++|++||.|.......+
T Consensus 123 Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~~S~vR 168 (487)
T PRK07190 123 GAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGSRSFVR 168 (487)
T ss_pred CCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCCCHHHH
Confidence 678999999999999988888777 778999999999998765443
No 70
>PRK05868 hypothetical protein; Validated
Probab=98.86 E-value=6.7e-07 Score=98.60 Aligned_cols=47 Identities=21% Similarity=0.227 Sum_probs=39.7
Q ss_pred HHcCCcccCceEEEEEecCCcEEEEE-CCEEEEeCEEEEcCChhhhhc
Q 004944 254 VENVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVLKS 300 (722)
Q Consensus 254 a~~l~I~ln~~V~~I~~~~~~v~V~~-~G~~~~AD~VI~AvP~~~l~~ 300 (722)
..+++|+++++|++|+.++++|+|+. +|++++||.||-|-...-..+
T Consensus 116 ~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~S~vR 163 (372)
T PRK05868 116 QPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLHSNVR 163 (372)
T ss_pred cCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCCCchHH
Confidence 34678999999999998888899888 888999999999988765544
No 71
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.86 E-value=3.2e-07 Score=101.85 Aligned_cols=35 Identities=43% Similarity=0.587 Sum_probs=33.1
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCC
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r 81 (722)
++||+|||||++||++|+.|++.|++|+|+|+++.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 48999999999999999999999999999999874
No 72
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.84 E-value=5.2e-07 Score=104.66 Aligned_cols=37 Identities=35% Similarity=0.516 Sum_probs=34.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCc
Q 004944 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (722)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~ 82 (722)
.++||+|||||++||++|+.|++.|++|+|+|+++.+
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~ 58 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTL 58 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 3489999999999999999999999999999998754
No 73
>PRK08244 hypothetical protein; Provisional
Probab=98.83 E-value=3.3e-07 Score=104.89 Aligned_cols=36 Identities=36% Similarity=0.562 Sum_probs=33.4
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCc
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~ 82 (722)
++||+|||||++||++|..|++.|++|+|+|+.+.+
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~ 37 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKET 37 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 389999999999999999999999999999998653
No 74
>PRK06185 hypothetical protein; Provisional
Probab=98.82 E-value=2.6e-07 Score=102.93 Aligned_cols=36 Identities=33% Similarity=0.473 Sum_probs=33.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCC
Q 004944 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (722)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r 81 (722)
.++||+|||||++||++|+.|++.|++|+|+|+.+.
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~ 40 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD 40 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 359999999999999999999999999999999753
No 75
>PRK06834 hypothetical protein; Provisional
Probab=98.82 E-value=4.4e-07 Score=103.47 Aligned_cols=43 Identities=19% Similarity=0.210 Sum_probs=37.3
Q ss_pred cCCcccCceEEEEEecCCcEEEEE-CCEEEEeCEEEEcCChhhh
Q 004944 256 NVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVL 298 (722)
Q Consensus 256 ~l~I~ln~~V~~I~~~~~~v~V~~-~G~~~~AD~VI~AvP~~~l 298 (722)
+++|+++++|++|..++++|.++. +|++++||.||.|......
T Consensus 114 gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~ 157 (488)
T PRK06834 114 GVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSL 157 (488)
T ss_pred CCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCC
Confidence 678999999999999989998887 7778999999999876543
No 76
>PRK07045 putative monooxygenase; Reviewed
Probab=98.81 E-value=3.7e-07 Score=101.16 Aligned_cols=36 Identities=42% Similarity=0.558 Sum_probs=33.8
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCc
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~ 82 (722)
.+||+|||||++||++|..|+++|++|+|+|+.+.+
T Consensus 5 ~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07045 5 PVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN 40 (388)
T ss_pred eeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence 489999999999999999999999999999998754
No 77
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.80 E-value=1.5e-07 Score=108.98 Aligned_cols=38 Identities=37% Similarity=0.474 Sum_probs=35.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcc
Q 004944 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAG 83 (722)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~G 83 (722)
.++||+|||||++||++|..|++.|++|+|||+...++
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~ 46 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLY 46 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 45899999999999999999999999999999987654
No 78
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.78 E-value=3.6e-08 Score=110.20 Aligned_cols=40 Identities=30% Similarity=0.522 Sum_probs=35.2
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeee
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (722)
+||+|||||++||++|++|+++|++|+|||+...+|..+.
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~~~~~aS 40 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPGPALETS 40 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCchhhhhe
Confidence 4899999999999999999999999999999766665443
No 79
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.78 E-value=6.7e-08 Score=109.08 Aligned_cols=41 Identities=51% Similarity=0.665 Sum_probs=38.6
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeee
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (722)
.++|+|||||+|||+||++|.+.|++|+|||+++.+||...
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~ 50 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWV 50 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceee
Confidence 48899999999999999999999999999999999999664
No 80
>PRK11445 putative oxidoreductase; Provisional
Probab=98.77 E-value=1.7e-06 Score=94.66 Aligned_cols=45 Identities=11% Similarity=0.108 Sum_probs=36.7
Q ss_pred HHcCCcccCceEEEEEecCCcEEEEE--CCE--EEEeCEEEEcCChhhh
Q 004944 254 VENVPILYEKTVHTIRYGSDGVQVLA--GSQ--VFEGDMVLCTVPLGVL 298 (722)
Q Consensus 254 a~~l~I~ln~~V~~I~~~~~~v~V~~--~G~--~~~AD~VI~AvP~~~l 298 (722)
..++++++++.|++|..+++++.|++ +|+ +++||.||.|......
T Consensus 110 ~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S~ 158 (351)
T PRK11445 110 PASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGANSM 158 (351)
T ss_pred hcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCCcH
Confidence 35778999999999998888888875 553 6899999999986543
No 81
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.77 E-value=1.4e-06 Score=96.29 Aligned_cols=38 Identities=45% Similarity=0.658 Sum_probs=34.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcc
Q 004944 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAG 83 (722)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~G 83 (722)
.++||||||||++||++||+|++.|.+|+|+|+..-.+
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~ 40 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGG 40 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCC
Confidence 35899999999999999999999999999999965444
No 82
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.76 E-value=8.1e-07 Score=98.02 Aligned_cols=44 Identities=2% Similarity=0.010 Sum_probs=36.3
Q ss_pred CCcccCceEEEEEecCCcEEEEECCEEEEeCEEEEcCChhhhhc
Q 004944 257 VPILYEKTVHTIRYGSDGVQVLAGSQVFEGDMVLCTVPLGVLKS 300 (722)
Q Consensus 257 l~I~ln~~V~~I~~~~~~v~V~~~G~~~~AD~VI~AvP~~~l~~ 300 (722)
+.++++++|++|..++++|+|..++.+++||.||.|-...-..+
T Consensus 120 v~~~~~~~v~~i~~~~~~v~v~~~~~~~~adlvIgADG~~S~vR 163 (374)
T PRK06617 120 ITLIDNNQYQEVISHNDYSIIKFDDKQIKCNLLIICDGANSKVR 163 (374)
T ss_pred cEEECCCeEEEEEEcCCeEEEEEcCCEEeeCEEEEeCCCCchhH
Confidence 66889999999999888888888444999999999988765443
No 83
>PRK07236 hypothetical protein; Provisional
Probab=98.74 E-value=1.3e-07 Score=104.81 Aligned_cols=43 Identities=9% Similarity=-0.064 Sum_probs=36.7
Q ss_pred CCcccCceEEEEEecCCcEEEEE-CCEEEEeCEEEEcCChhhhh
Q 004944 257 VPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVLK 299 (722)
Q Consensus 257 l~I~ln~~V~~I~~~~~~v~V~~-~G~~~~AD~VI~AvP~~~l~ 299 (722)
++|+++++|++|..++++|+|+. +|++++||.||.|-......
T Consensus 113 ~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~v 156 (386)
T PRK07236 113 ERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRSTV 156 (386)
T ss_pred cEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCchH
Confidence 45999999999999888898888 88899999999997765443
No 84
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.74 E-value=7.1e-08 Score=109.48 Aligned_cols=39 Identities=21% Similarity=0.398 Sum_probs=34.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHHC-C-CcEEEEecCCCcce
Q 004944 46 NKLRVLVIGAGLAGLAAARQLMRL-G-FRVTVLEGRKRAGG 84 (722)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~-G-~~V~VLEa~~r~GG 84 (722)
.++||||||||+.|+++||+|++. + .+|+|||+.+.+|.
T Consensus 44 ~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~~a~ 84 (497)
T PTZ00383 44 DVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSDFAL 84 (497)
T ss_pred CcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcchhh
Confidence 458999999999999999999996 3 69999999887663
No 85
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.74 E-value=2e-08 Score=100.47 Aligned_cols=41 Identities=20% Similarity=0.297 Sum_probs=30.9
Q ss_pred cCCcccCceEEEEEecCCcEEEEE-CCEEEEeCEEEEcCChh
Q 004944 256 NVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLG 296 (722)
Q Consensus 256 ~l~I~ln~~V~~I~~~~~~v~V~~-~G~~~~AD~VI~AvP~~ 296 (722)
+++|+++++|++|.+++++|.|++ ++++++||+||+|+...
T Consensus 96 ~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~ 137 (203)
T PF13738_consen 96 GLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHY 137 (203)
T ss_dssp TGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SS
T ss_pred CcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeecc
Confidence 456999999999999999999999 66799999999999853
No 86
>PRK06126 hypothetical protein; Provisional
Probab=98.74 E-value=4.3e-07 Score=105.29 Aligned_cols=35 Identities=34% Similarity=0.508 Sum_probs=32.8
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCC
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r 81 (722)
.+||+|||||++||++|..|++.|++|+|+|+.+.
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~ 41 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG 41 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 48999999999999999999999999999999763
No 87
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.73 E-value=1.6e-07 Score=111.27 Aligned_cols=40 Identities=33% Similarity=0.477 Sum_probs=35.9
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceee
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~ 86 (722)
.+||+|||||++|+++||+|+++|++|+|||+...+|+.+
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~~~~ga 299 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARRGWQVTLYEADEAPAQGA 299 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCeEEEEecCCCccccC
Confidence 3699999999999999999999999999999987776433
No 88
>PRK07588 hypothetical protein; Provisional
Probab=98.69 E-value=1.3e-07 Score=105.00 Aligned_cols=51 Identities=22% Similarity=0.222 Sum_probs=41.4
Q ss_pred HHHHHHcCCcccCceEEEEEecCCcEEEEE-CCEEEEeCEEEEcCChhhhhc
Q 004944 250 VQALVENVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVLKS 300 (722)
Q Consensus 250 ~~aLa~~l~I~ln~~V~~I~~~~~~v~V~~-~G~~~~AD~VI~AvP~~~l~~ 300 (722)
.+++..+++|+++++|++|+.++++|+|++ +|+++++|.||.|-......+
T Consensus 110 ~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S~vR 161 (391)
T PRK07588 110 YTAIDGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHSHVR 161 (391)
T ss_pred HHhhhcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCccch
Confidence 334444578999999999999888999888 888899999999988765444
No 89
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.69 E-value=6.6e-09 Score=102.56 Aligned_cols=70 Identities=29% Similarity=0.431 Sum_probs=44.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeeeeeecCCCCCCCcceEeeccceEEcCCCCcHHHHHHHHhCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGTLGNPLGILAKQLGS 127 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~T~~~~g~~gn~~~~~~D~Ga~~~~~~~~~~l~~L~~eLGl 127 (722)
+||+|||||+|||+||++|+++|++|+|||++..+||.++.--. .|. ...+ ..+...+++++|+
T Consensus 18 ~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~----------lf~--~iVV----q~~a~~iL~elgi 81 (230)
T PF01946_consen 18 YDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGM----------LFN--KIVV----QEEADEILDELGI 81 (230)
T ss_dssp ESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CT----------T-----EEE----ETTTHHHHHHHT-
T ss_pred CCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCcccccccc----------ccc--hhhh----hhhHHHHHHhCCc
Confidence 89999999999999999999999999999999999986642110 111 0111 1234458899999
Q ss_pred Ceeeec
Q 004944 128 LLHKVR 133 (722)
Q Consensus 128 ~~~~~~ 133 (722)
+.....
T Consensus 82 ~y~~~~ 87 (230)
T PF01946_consen 82 PYEEYG 87 (230)
T ss_dssp --EE-S
T ss_pred eeEEeC
Confidence 876544
No 90
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.67 E-value=6.2e-07 Score=102.84 Aligned_cols=41 Identities=34% Similarity=0.555 Sum_probs=38.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceee
Q 004944 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (722)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~ 86 (722)
.++||||||||++||+||+.++++|.+|+|||+.+.+||..
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s 100 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNT 100 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcc
Confidence 46899999999999999999999999999999999998843
No 91
>PRK07538 hypothetical protein; Provisional
Probab=98.67 E-value=1.8e-06 Score=96.60 Aligned_cols=35 Identities=34% Similarity=0.603 Sum_probs=32.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCc
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~ 82 (722)
+||+|||||++||++|+.|+++|++|+|||+++.+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 35 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL 35 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcc
Confidence 58999999999999999999999999999998654
No 92
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.67 E-value=1.6e-06 Score=97.79 Aligned_cols=54 Identities=20% Similarity=0.174 Sum_probs=40.1
Q ss_pred HHHHHHHHH----cCCcccCceEEEEEec-------CCcEEEEE-CCEEEEeCEEEEcCChhhhhc
Q 004944 247 GRLVQALVE----NVPILYEKTVHTIRYG-------SDGVQVLA-GSQVFEGDMVLCTVPLGVLKS 300 (722)
Q Consensus 247 ~~L~~aLa~----~l~I~ln~~V~~I~~~-------~~~v~V~~-~G~~~~AD~VI~AvP~~~l~~ 300 (722)
..|.+.+.+ +++++++++|++|+.. +++++|+. +|++++||.||-|-......+
T Consensus 121 ~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~vR 186 (437)
T TIGR01989 121 NSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSNVR 186 (437)
T ss_pred HHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCChhH
Confidence 334444443 3679999999999752 45688877 889999999999987765544
No 93
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.66 E-value=1.4e-05 Score=88.13 Aligned_cols=47 Identities=17% Similarity=0.174 Sum_probs=37.4
Q ss_pred HHHHHHcCCcccCceEEEEEecCCcEEEEE-CCEEEEeCEEEEcCChh
Q 004944 250 VQALVENVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLG 296 (722)
Q Consensus 250 ~~aLa~~l~I~ln~~V~~I~~~~~~v~V~~-~G~~~~AD~VI~AvP~~ 296 (722)
.+.+.++..+++++.|++|...++++.|++ +|.+++|+.||-|.++.
T Consensus 94 ~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~ 141 (374)
T PF05834_consen 94 LERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPS 141 (374)
T ss_pred HHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcc
Confidence 333333445889999999999988777777 88899999999999854
No 94
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.66 E-value=4.5e-08 Score=110.74 Aligned_cols=41 Identities=20% Similarity=0.293 Sum_probs=36.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHHC--CCcEEEEecCCCcceee
Q 004944 46 NKLRVLVIGAGLAGLAAARQLMRL--GFRVTVLEGRKRAGGRV 86 (722)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~--G~~V~VLEa~~r~GGr~ 86 (722)
..+|||||||||+|+++|+.|++. |.+|+|||+.+.+|-..
T Consensus 5 ~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a~~s 47 (497)
T PRK13339 5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPAIES 47 (497)
T ss_pred ccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcchhc
Confidence 348999999999999999999998 89999999977877533
No 95
>PRK06996 hypothetical protein; Provisional
Probab=98.65 E-value=3.7e-06 Score=93.53 Aligned_cols=48 Identities=19% Similarity=0.219 Sum_probs=37.1
Q ss_pred HHHHHHHHH-cCCcccCceEEEEEecCCcEEEEE-CC---EEEEeCEEEEcCC
Q 004944 247 GRLVQALVE-NVPILYEKTVHTIRYGSDGVQVLA-GS---QVFEGDMVLCTVP 294 (722)
Q Consensus 247 ~~L~~aLa~-~l~I~ln~~V~~I~~~~~~v~V~~-~G---~~~~AD~VI~AvP 294 (722)
..|.+.+.+ +++++++++|++++.++++|+++. ++ ++++||.||-|-.
T Consensus 119 ~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgADG 171 (398)
T PRK06996 119 AALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQAEG 171 (398)
T ss_pred HHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEECCC
Confidence 334444433 567999999999998888898877 33 6899999999976
No 96
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.65 E-value=3.1e-07 Score=102.23 Aligned_cols=52 Identities=23% Similarity=0.319 Sum_probs=40.7
Q ss_pred ChHHHHHHHHH-----cCCcccCceEEEEEecCCcEEEEECCEEEEeCEEEEcCChh
Q 004944 245 GNGRLVQALVE-----NVPILYEKTVHTIRYGSDGVQVLAGSQVFEGDMVLCTVPLG 296 (722)
Q Consensus 245 G~~~L~~aLa~-----~l~I~ln~~V~~I~~~~~~v~V~~~G~~~~AD~VI~AvP~~ 296 (722)
....+.+.|.+ +++|+++++|++|..+++.+.|.++++++.+|.||+|++..
T Consensus 103 ~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~~~~~i~ad~VIlAtG~~ 159 (400)
T TIGR00275 103 SAADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVETSGGEYEADKVILATGGL 159 (400)
T ss_pred CHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEECCcEEEcCEEEECCCCc
Confidence 34555555543 57799999999998877777777777789999999999864
No 97
>PRK06753 hypothetical protein; Provisional
Probab=98.65 E-value=1.4e-07 Score=103.92 Aligned_cols=44 Identities=16% Similarity=0.074 Sum_probs=37.3
Q ss_pred CCcccCceEEEEEecCCcEEEEE-CCEEEEeCEEEEcCChhhhhc
Q 004944 257 VPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVLKS 300 (722)
Q Consensus 257 l~I~ln~~V~~I~~~~~~v~V~~-~G~~~~AD~VI~AvP~~~l~~ 300 (722)
.+|+++++|++|+.++++++|++ +|+++.+|.||-|-......+
T Consensus 111 ~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~vR 155 (373)
T PRK06753 111 DAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSKVR 155 (373)
T ss_pred ceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchHHH
Confidence 35999999999998888899888 888999999999988654443
No 98
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.63 E-value=3.4e-07 Score=104.06 Aligned_cols=39 Identities=23% Similarity=0.378 Sum_probs=35.2
Q ss_pred CcEEEECccHHHHHHHHHHHHC--CCcEEEEecCCCcceee
Q 004944 48 LRVLVIGAGLAGLAAARQLMRL--GFRVTVLEGRKRAGGRV 86 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~--G~~V~VLEa~~r~GGr~ 86 (722)
+|||||||||+|+++|++|++. |.+|+|||+.+.+|...
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~~a~~~ 41 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDAVAAES 41 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCcchhhh
Confidence 5899999999999999999997 99999999988777433
No 99
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.63 E-value=3.6e-07 Score=103.99 Aligned_cols=41 Identities=22% Similarity=0.311 Sum_probs=36.2
Q ss_pred CCcEEEECccHHHHHHHHHHHHC--CCcEEEEecCCCcceeee
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRL--GFRVTVLEGRKRAGGRVY 87 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~--G~~V~VLEa~~r~GGr~~ 87 (722)
++||+||||||.|+++||+|++. |.+|+|||+.+.+|+...
T Consensus 5 ~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~a~~sS 47 (494)
T PRK05257 5 KTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGVALESS 47 (494)
T ss_pred cceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCchhhhcC
Confidence 48999999999999999999985 789999999888776543
No 100
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.62 E-value=4.9e-08 Score=107.16 Aligned_cols=34 Identities=41% Similarity=0.673 Sum_probs=32.0
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r 81 (722)
+||+|||||++|+++||+|++.|++|+|||+...
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 5899999999999999999999999999999764
No 101
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.62 E-value=7.8e-07 Score=101.10 Aligned_cols=39 Identities=44% Similarity=0.549 Sum_probs=35.5
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCC--ccee
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR--AGGR 85 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r--~GGr 85 (722)
++||||||||++||+||+.|+++|.+|+|+|+.+. .||.
T Consensus 4 ~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~ 44 (466)
T PRK08274 4 MVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGN 44 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcc
Confidence 48999999999999999999999999999999874 5663
No 102
>PLN02463 lycopene beta cyclase
Probab=98.60 E-value=1.2e-05 Score=90.35 Aligned_cols=35 Identities=31% Similarity=0.550 Sum_probs=32.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
..+||+|||||+|||++|+.|+++|++|+|+|+++
T Consensus 27 ~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~ 61 (447)
T PLN02463 27 RVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSP 61 (447)
T ss_pred cCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCc
Confidence 35899999999999999999999999999999965
No 103
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.59 E-value=4.9e-06 Score=97.81 Aligned_cols=36 Identities=31% Similarity=0.517 Sum_probs=32.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHH-CCCcEEEEecCCC
Q 004944 46 NKLRVLVIGAGLAGLAAARQLMR-LGFRVTVLEGRKR 81 (722)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak-~G~~V~VLEa~~r 81 (722)
+++||+|||||++||++|..|++ .|++|+|||+.+.
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~ 67 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG 67 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence 45899999999999999999999 5999999999753
No 104
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.58 E-value=7.6e-07 Score=102.14 Aligned_cols=40 Identities=30% Similarity=0.439 Sum_probs=36.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCccee
Q 004944 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGR 85 (722)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr 85 (722)
+.+||+|||||++|+++|+.|+++|.+|+|+|+++..+|-
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~Gt 44 (508)
T PRK12266 5 ETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASAT 44 (508)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCc
Confidence 4599999999999999999999999999999998766553
No 105
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.58 E-value=1.8e-06 Score=100.10 Aligned_cols=42 Identities=33% Similarity=0.578 Sum_probs=38.3
Q ss_pred CCCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeee
Q 004944 45 SNKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (722)
Q Consensus 45 ~~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (722)
..++||||||+| +||+||...++.|.+|+|+||.+.+||.+.
T Consensus 14 d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~ 55 (564)
T PRK12845 14 DTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTA 55 (564)
T ss_pred CceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCccc
Confidence 346999999999 999999999999999999999999999553
No 106
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.56 E-value=1.2e-06 Score=98.69 Aligned_cols=38 Identities=39% Similarity=0.590 Sum_probs=35.8
Q ss_pred cEEEECccHHHHHHHHHHHHCC-CcEEEEecCCCcceee
Q 004944 49 RVLVIGAGLAGLAAARQLMRLG-FRVTVLEGRKRAGGRV 86 (722)
Q Consensus 49 dVvIVGAGiAGLsAA~~Lak~G-~~V~VLEa~~r~GGr~ 86 (722)
||||||||++||+||+.++++| .+|+||||.+..||..
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s 39 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNS 39 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcc
Confidence 7999999999999999999999 9999999999988853
No 107
>PRK07121 hypothetical protein; Validated
Probab=98.55 E-value=1.9e-06 Score=98.55 Aligned_cols=41 Identities=41% Similarity=0.538 Sum_probs=38.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceee
Q 004944 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (722)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~ 86 (722)
..+||||||||+|||+||+.++++|.+|+||||.+..||..
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~s 59 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGAT 59 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCcc
Confidence 46999999999999999999999999999999999888844
No 108
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.53 E-value=1.3e-06 Score=97.50 Aligned_cols=38 Identities=39% Similarity=0.569 Sum_probs=33.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHHC-CC-cEEEEecCCCcce
Q 004944 46 NKLRVLVIGAGLAGLAAARQLMRL-GF-RVTVLEGRKRAGG 84 (722)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~-G~-~V~VLEa~~r~GG 84 (722)
.++||+|||||++|+++||+|++. |. +|+|||++. +|+
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~-~~~ 68 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW-LGG 68 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc-ccC
Confidence 358999999999999999999995 95 899999975 543
No 109
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.53 E-value=8.6e-07 Score=99.16 Aligned_cols=36 Identities=50% Similarity=0.714 Sum_probs=33.3
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcce
Q 004944 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (722)
Q Consensus 49 dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GG 84 (722)
||+|||+|+|||+||+.++++|.+|+|+||.+..||
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg 36 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGG 36 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGS
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeeccccc
Confidence 899999999999999999999999999999999998
No 110
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.52 E-value=8.3e-07 Score=99.29 Aligned_cols=54 Identities=17% Similarity=0.244 Sum_probs=43.2
Q ss_pred HHHHHHHHHcC---CcccCceEEEEEecCCcEEEEE-CCEEEEeCEEEEcCChhhhhc
Q 004944 247 GRLVQALVENV---PILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVLKS 300 (722)
Q Consensus 247 ~~L~~aLa~~l---~I~ln~~V~~I~~~~~~v~V~~-~G~~~~AD~VI~AvP~~~l~~ 300 (722)
..|.+.|.+.+ .|+++++|++|..++++|+|++ +|.++++|.||.|-......+
T Consensus 105 ~~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~vR 162 (414)
T TIGR03219 105 ADFLDALLKHLPEGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKSALR 162 (414)
T ss_pred HHHHHHHHHhCCCceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccHHHH
Confidence 45666666554 4899999999999888899887 888999999999988765443
No 111
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.51 E-value=3.5e-07 Score=101.54 Aligned_cols=53 Identities=21% Similarity=0.261 Sum_probs=41.2
Q ss_pred HHHHHHHHH--cCCcccCceEEEEEecCCcEEEEE-CCEEEEeCEEEEcCChhhhh
Q 004944 247 GRLVQALVE--NVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVLK 299 (722)
Q Consensus 247 ~~L~~aLa~--~l~I~ln~~V~~I~~~~~~v~V~~-~G~~~~AD~VI~AvP~~~l~ 299 (722)
+.|.+.+.+ +++++++++|+++..+++++.+++ +|+++.||.||.|.......
T Consensus 113 ~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~~ 168 (396)
T PRK08163 113 LSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVKSVV 168 (396)
T ss_pred HHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEECCCcChHH
Confidence 344444433 367999999999998888888877 78889999999998765443
No 112
>PLN02697 lycopene epsilon cyclase
Probab=98.51 E-value=3.7e-05 Score=88.08 Aligned_cols=35 Identities=37% Similarity=0.589 Sum_probs=32.5
Q ss_pred CCCCcEEEECccHHHHHHHHHHHHCCCcEEEEecC
Q 004944 45 SNKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (722)
Q Consensus 45 ~~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~ 79 (722)
...+||+|||||+|||++|+.|++.|++|+|+|+.
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~ 140 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPD 140 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCc
Confidence 44699999999999999999999999999999974
No 113
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.46 E-value=5.3e-06 Score=96.72 Aligned_cols=41 Identities=44% Similarity=0.590 Sum_probs=38.3
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeee
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (722)
++||||||||++||+||+.++++|.+|+|+||.+..||...
T Consensus 9 ~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~~ 49 (574)
T PRK12842 9 TCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTA 49 (574)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCccc
Confidence 48999999999999999999999999999999999988653
No 114
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.45 E-value=9.3e-07 Score=91.97 Aligned_cols=62 Identities=16% Similarity=0.124 Sum_probs=45.4
Q ss_pred CeeeeCCChHHHHHHHHH-cCCcccCceEEEEEec---CCcEEEEE-CCEEEEeCEEEEcCChhhhh
Q 004944 238 DHCFLPGGNGRLVQALVE-NVPILYEKTVHTIRYG---SDGVQVLA-GSQVFEGDMVLCTVPLGVLK 299 (722)
Q Consensus 238 ~~~~~~gG~~~L~~aLa~-~l~I~ln~~V~~I~~~---~~~v~V~~-~G~~~~AD~VI~AvP~~~l~ 299 (722)
++.........+.+.+.+ |+.++-+..|+.+... +..+.|.| +|..+.|+.+|+|+.+...+
T Consensus 148 Gvi~a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~k 214 (399)
T KOG2820|consen 148 GVINAAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINK 214 (399)
T ss_pred cEeeHHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHh
Confidence 444544445555555544 6679999999998843 34577777 88899999999999988765
No 115
>PRK09897 hypothetical protein; Provisional
Probab=98.43 E-value=2.9e-06 Score=96.96 Aligned_cols=42 Identities=24% Similarity=0.518 Sum_probs=36.3
Q ss_pred CCcEEEECccHHHHHHHHHHHHCC--CcEEEEecCCCcc-eeeee
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLG--FRVTVLEGRKRAG-GRVYT 88 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G--~~V~VLEa~~r~G-Gr~~T 88 (722)
+++|+|||||.+|+++|..|.+.+ .+|+|||++..+| |.+++
T Consensus 1 m~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays 45 (534)
T PRK09897 1 MKKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYS 45 (534)
T ss_pred CCeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeec
Confidence 368999999999999999999875 4899999999998 55544
No 116
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.41 E-value=2e-06 Score=95.83 Aligned_cols=35 Identities=40% Similarity=0.574 Sum_probs=32.8
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCc
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~ 82 (722)
.+|+|||||++||++|..|+++|++|+|+|+.+.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~ 37 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQEL 37 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 68999999999999999999999999999998754
No 117
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.39 E-value=1.8e-06 Score=99.97 Aligned_cols=38 Identities=32% Similarity=0.510 Sum_probs=34.2
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcce
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GG 84 (722)
.+||+|||||+.|+++|++|++.|++|+|||+.+..+|
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~~~G 43 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALRGLRCILVERHDIATG 43 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCCCCC
Confidence 48999999999999999999999999999999764333
No 118
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.38 E-value=6.9e-06 Score=96.61 Aligned_cols=53 Identities=32% Similarity=0.432 Sum_probs=41.8
Q ss_pred cccccccccCCCCCCCCCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcce
Q 004944 30 GVAPEIKEKIPVEPSSNKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (722)
Q Consensus 30 g~~~~~~~~~p~~~~~~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GG 84 (722)
|-.|.+....+.+. .++||+|||||+|||+||..++++|.+|+|+|+...+||
T Consensus 20 ~~~~~~~~~~~~~~--~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~~ 72 (640)
T PRK07573 20 RYKFHLKLVNPANK--RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPRR 72 (640)
T ss_pred hccccccccCCccc--cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCCc
Confidence 44555554444333 348999999999999999999999999999999877763
No 119
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=98.37 E-value=1.3e-05 Score=88.91 Aligned_cols=238 Identities=16% Similarity=0.185 Sum_probs=124.6
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeeeeeecCC-------C-------CCCCcceEeeccceEEc
Q 004944 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEG-------G-------AGNRISASADLGGSVLT 111 (722)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~T~~~~g-------~-------~gn~~~~~~D~Ga~~~~ 111 (722)
+++||||+|.|+.-...|..|++.|++|+.+|+++.-||...|..... . .+....+.+|+-+..+.
T Consensus 3 ~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~~~~~~~~sR~ynIDL~PKll~ 82 (438)
T PF00996_consen 3 EEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWTPPESLGRSRDYNIDLIPKLLY 82 (438)
T ss_dssp SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCHHHHHHHTGGGC-EESS--BEE
T ss_pred ccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcccHHHHHHHhhccccccccccccccceeEecchHhhh
Confidence 359999999999999999999999999999999999999999876431 0 01234578888888776
Q ss_pred CCCCcHHHHHHHHhCCCeeee-c-CCcceEecCCcccChhh-----------hHHHHHHHHHHHHHHHHHHHHhh-c---
Q 004944 112 GTLGNPLGILAKQLGSLLHKV-R-DKCPLYRLDGNSVDPEI-----------DMKVEADFNRLLDKASRLRQLMG-E--- 174 (722)
Q Consensus 112 ~~~~~~l~~L~~eLGl~~~~~-~-~~~~~~~~~G~~~~~~~-----------~~~~~~~~~~ll~~~~~~~~~~~-~--- 174 (722)
.. ..+-.++-.-++.-+.. . -...+.+.+|.....|. ...-.+.+.+++..+..+.+.-. .
T Consensus 83 a~--g~LV~lLi~S~V~rYLEFk~V~~~~v~~~~~l~kVP~sr~dvf~s~~lsl~eKR~lmkFl~~v~~~~~~~~~~~~~ 160 (438)
T PF00996_consen 83 AR--GPLVKLLISSGVTRYLEFKAVDGSYVYKNGKLHKVPCSREDVFKSKLLSLFEKRRLMKFLKFVANYEEDDPSTHKG 160 (438)
T ss_dssp TT--SHHHHHHHHCTGGGGSEEEEESEEEEEETTEEEE--SSHHHHHC-TTS-HHHHHHHHHHHHHHHHGCTTBGGGSTT
T ss_pred cc--CHHHHHHHhCCcccceEEEEcceeEEEeCCEEeeCCCCHHHhhcCCCccHHHHHHHHHHHHHHhhcccCCcchhhc
Confidence 44 34555666666543211 1 12234445665543332 12223444455554433322110 0
Q ss_pred c-ccCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhh---hccchhhHHHHH--HhhccCCCCCCCCCeeeeCCChHH
Q 004944 175 V-AMDVSLGSALETFWRVYWDSGNAEAMNLFNWHLANLE---YANASLLSKLSL--AFWDQDDPYDMGGDHCFLPGGNGR 248 (722)
Q Consensus 175 ~-~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~l~~--~~~~~~~~~~~~g~~~~~~gG~~~ 248 (722)
. ....++.++++.+ .+++...+++...++... +........+.. .+..-...+.. ..+.++.-|.+.
T Consensus 161 ~~~~~~~~~e~~~~f------~L~~~~~~~i~haiaL~~~~~~~~~p~~~~l~ri~~yl~SlgryG~-sPfLyP~YG~GE 233 (438)
T PF00996_consen 161 LDPEKKTFQELLKKF------GLSENLIDFIGHAIALSLDDSYLTEPAREGLERIKLYLSSLGRYGK-SPFLYPLYGLGE 233 (438)
T ss_dssp G-TTTSBHHHHHHHT------TS-HHHHHHHHHHTS-SSSSGGGGSBSHHHHHHHHHHHHHHCCCSS-SSEEEETT-TTH
T ss_pred cccccccHHHHHHhc------CCCHHHHHHHHHhhhhccCcccccccHHHHHHHHHHHHHHHhccCC-CCEEEEccCCcc
Confidence 0 1234444544322 234444444432211111 000001111111 12111122222 367888899999
Q ss_pred HHHHHHH-----cCCcccCceEEEEEecCCc-EE-EEECCEEEEeCEEEEc
Q 004944 249 LVQALVE-----NVPILYEKTVHTIRYGSDG-VQ-VLAGSQVFEGDMVLCT 292 (722)
Q Consensus 249 L~~aLa~-----~l~I~ln~~V~~I~~~~~~-v~-V~~~G~~~~AD~VI~A 292 (722)
|++++++ |....+|++|.+|..++++ +. |..+|++++|++||+.
T Consensus 234 LpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s~ge~v~~k~vI~d 284 (438)
T PF00996_consen 234 LPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKSEGEVVKAKKVIGD 284 (438)
T ss_dssp HHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEETTEEEEESEEEEE
T ss_pred HHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEecCCEEEEcCEEEEC
Confidence 9999986 4568999999999986544 33 4449999999999964
No 120
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.36 E-value=7.6e-06 Score=94.93 Aligned_cols=40 Identities=45% Similarity=0.707 Sum_probs=37.6
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCC--Ccceee
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK--RAGGRV 86 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~--r~GGr~ 86 (722)
++||+|||+|+|||+||..++++|.+|+|||+.+ .+||.+
T Consensus 4 ~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s 45 (549)
T PRK12834 4 DADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQA 45 (549)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCce
Confidence 4899999999999999999999999999999999 788855
No 121
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.35 E-value=3.4e-06 Score=98.23 Aligned_cols=53 Identities=26% Similarity=0.248 Sum_probs=42.7
Q ss_pred HHHHHHHHHcCC---cccCceEEEEEecCCcEEEEE-CCEEEEeCEEEEcCChhhhh
Q 004944 247 GRLVQALVENVP---ILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGVLK 299 (722)
Q Consensus 247 ~~L~~aLa~~l~---I~ln~~V~~I~~~~~~v~V~~-~G~~~~AD~VI~AvP~~~l~ 299 (722)
..|.+.|.+.+. ++++++|++|..++++|+|++ +|+++++|.||.|-......
T Consensus 194 ~~L~~~L~~alg~~~i~~g~~V~~I~~~~d~VtV~~~dG~ti~aDlVVGADG~~S~v 250 (668)
T PLN02927 194 MTLQQILARAVGEDVIRNESNVVDFEDSGDKVTVVLENGQRYEGDLLVGADGIWSKV 250 (668)
T ss_pred HHHHHHHHhhCCCCEEEcCCEEEEEEEeCCEEEEEECCCCEEEcCEEEECCCCCcHH
Confidence 456666666552 788999999999899999888 88899999999998876543
No 122
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.34 E-value=1.8e-05 Score=89.08 Aligned_cols=40 Identities=33% Similarity=0.587 Sum_probs=37.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCccee
Q 004944 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGR 85 (722)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr 85 (722)
+.+||+||||||+|+.+|+.++-+|++|+|+|++|...|-
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGT 50 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGT 50 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcc
Confidence 4599999999999999999999999999999999987773
No 123
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.33 E-value=1.8e-05 Score=92.43 Aligned_cols=43 Identities=40% Similarity=0.495 Sum_probs=39.2
Q ss_pred CCCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeee
Q 004944 45 SNKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (722)
Q Consensus 45 ~~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (722)
+.++||+|||+|++|++||+.++++|.+|+|||+.+.+||.+.
T Consensus 10 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~ 52 (581)
T PRK06134 10 DLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTA 52 (581)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCcccc
Confidence 3469999999999999999999999999999999998888654
No 124
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.33 E-value=1.9e-05 Score=92.16 Aligned_cols=40 Identities=33% Similarity=0.506 Sum_probs=37.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCccee
Q 004944 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGR 85 (722)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr 85 (722)
.++||+|||+|++||+||+.++++|.+|+||||.+..||.
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~ 49 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGS 49 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCch
Confidence 4589999999999999999999999999999999988883
No 125
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.31 E-value=5e-06 Score=93.48 Aligned_cols=38 Identities=26% Similarity=0.399 Sum_probs=34.3
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCccee
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGR 85 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr 85 (722)
.+||+|||+|.|||+||..++ .|.+|+|+||.+..||.
T Consensus 4 ~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~ 41 (433)
T PRK06175 4 YADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECN 41 (433)
T ss_pred cccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCc
Confidence 489999999999999999984 79999999999887763
No 126
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.31 E-value=6.2e-07 Score=93.26 Aligned_cols=39 Identities=41% Similarity=0.600 Sum_probs=37.3
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceee
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~ 86 (722)
+||+|||||++||+||++|+++|++|+|+|++..+||.+
T Consensus 22 ~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~ 60 (254)
T TIGR00292 22 SDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGS 60 (254)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccc
Confidence 999999999999999999999999999999999998754
No 127
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.28 E-value=6.4e-06 Score=79.24 Aligned_cols=48 Identities=25% Similarity=0.354 Sum_probs=36.5
Q ss_pred HHHHHHHHcCCc-ccCceEEEEEecCCcEEEEE-CCEEEEeCEEEEcCCh
Q 004944 248 RLVQALVENVPI-LYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPL 295 (722)
Q Consensus 248 ~L~~aLa~~l~I-~ln~~V~~I~~~~~~v~V~~-~G~~~~AD~VI~AvP~ 295 (722)
.+.+.+..+++| +...+|+.|...++++.|++ +|..+.||+||+|+..
T Consensus 106 ~~~~~~~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 106 RLLARLPAGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred HHHHhhcCCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence 333344344442 45779999999999998877 8899999999999864
No 128
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.28 E-value=7.5e-07 Score=92.89 Aligned_cols=39 Identities=38% Similarity=0.657 Sum_probs=37.2
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceee
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~ 86 (722)
+||+|||||+|||+||++|+++|++|+|+|+...+||.+
T Consensus 26 ~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~ 64 (257)
T PRK04176 26 VDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGM 64 (257)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCcc
Confidence 899999999999999999999999999999999998754
No 129
>PRK12839 hypothetical protein; Provisional
Probab=98.27 E-value=4.2e-05 Score=88.97 Aligned_cols=42 Identities=33% Similarity=0.473 Sum_probs=38.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeee
Q 004944 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (722)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (722)
.++||+|||+|.+||+||+.|+++|.+|+|+|+...+||.+.
T Consensus 7 ~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~ 48 (572)
T PRK12839 7 HTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATA 48 (572)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcccc
Confidence 359999999999999999999999999999999999998664
No 130
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.26 E-value=7.2e-06 Score=94.44 Aligned_cols=41 Identities=41% Similarity=0.603 Sum_probs=36.1
Q ss_pred CCCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeee
Q 004944 45 SNKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (722)
Q Consensus 45 ~~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (722)
...+||+|||||++||+||.+|++.|++|+|+|. ++||.+.
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~--~~GG~~~ 249 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAE--RFGGQVL 249 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCeee
Confidence 3469999999999999999999999999999976 4887653
No 131
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.23 E-value=2.7e-05 Score=90.81 Aligned_cols=38 Identities=32% Similarity=0.504 Sum_probs=34.1
Q ss_pred CCcEEEECccHHHHHHHHHHHHCC--CcEEEEecCCCcce
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLG--FRVTVLEGRKRAGG 84 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G--~~V~VLEa~~r~GG 84 (722)
.+||+|||||+|||+||+.++++| .+|+|+||....||
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg 42 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRS 42 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCch
Confidence 379999999999999999999875 89999999876665
No 132
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.20 E-value=1.2e-05 Score=92.40 Aligned_cols=40 Identities=43% Similarity=0.622 Sum_probs=35.5
Q ss_pred CCCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceee
Q 004944 45 SNKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (722)
Q Consensus 45 ~~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~ 86 (722)
...+||+|||||.|||+||.+|++.|++|+|+|. ++||.+
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~ 249 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQV 249 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCcc
Confidence 3459999999999999999999999999999974 678754
No 133
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.20 E-value=3.8e-05 Score=87.87 Aligned_cols=38 Identities=42% Similarity=0.510 Sum_probs=34.7
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCccee
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGR 85 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr 85 (722)
.+||+|||||+|||+||..+++.|. |+|+||.+..||.
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~ 39 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGN 39 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCc
Confidence 3799999999999999999999997 9999999877764
No 134
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.20 E-value=2.3e-05 Score=92.12 Aligned_cols=38 Identities=39% Similarity=0.424 Sum_probs=35.1
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcce
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GG 84 (722)
.+||+|||||+|||+||..++++|.+|+|+|+....||
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g 45 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKA 45 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCC
Confidence 48999999999999999999999999999999876555
No 135
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=98.19 E-value=3.5e-05 Score=85.27 Aligned_cols=44 Identities=30% Similarity=0.433 Sum_probs=38.8
Q ss_pred CCcEEEECccHHHHHHHHHHHHCC----CcEEEEecCCCcceeeeeee
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLG----FRVTVLEGRKRAGGRVYTKK 90 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G----~~V~VLEa~~r~GGr~~T~~ 90 (722)
+.++-|||+|||+|+||.+|-+.| .+|+|||+.+.+||.+.+..
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g 49 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAG 49 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCC
Confidence 467899999999999999999974 58999999999999886543
No 136
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.18 E-value=2e-05 Score=88.79 Aligned_cols=30 Identities=53% Similarity=0.699 Sum_probs=28.7
Q ss_pred EECccHHHHHHHHHHHHCCCcEEEEecCCC
Q 004944 52 VIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (722)
Q Consensus 52 IVGAGiAGLsAA~~Lak~G~~V~VLEa~~r 81 (722)
|||+|++||+||+.++++|.+|+||||.+.
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~ 30 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGASVLLLEAAPR 30 (432)
T ss_pred CCcccHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 899999999999999999999999999874
No 137
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.17 E-value=7.2e-05 Score=87.29 Aligned_cols=42 Identities=36% Similarity=0.538 Sum_probs=38.7
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeee
Q 004944 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (722)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (722)
.++||+|||+|.+||+||+.++++|.+|+|+|+.+.+||.+.
T Consensus 15 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~ 56 (578)
T PRK12843 15 AEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTA 56 (578)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCccc
Confidence 358999999999999999999999999999999999998554
No 138
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.17 E-value=2.7e-06 Score=96.18 Aligned_cols=42 Identities=36% Similarity=0.504 Sum_probs=38.9
Q ss_pred CCcEEEECccHHHHHHHHHHHH--CCCcEEEEecCCCcceeeee
Q 004944 47 KLRVLVIGAGLAGLAAARQLMR--LGFRVTVLEGRKRAGGRVYT 88 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak--~G~~V~VLEa~~r~GGr~~T 88 (722)
..+|+|||||+|||+||+.|++ .|++|+|||+.+.+||.++.
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~ 69 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRS 69 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEee
Confidence 4789999999999999999987 79999999999999998864
No 139
>PLN02661 Putative thiazole synthesis
Probab=98.16 E-value=3.7e-06 Score=90.34 Aligned_cols=41 Identities=32% Similarity=0.596 Sum_probs=37.4
Q ss_pred CCcEEEECccHHHHHHHHHHHHC-CCcEEEEecCCCcceeee
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRL-GFRVTVLEGRKRAGGRVY 87 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~-G~~V~VLEa~~r~GGr~~ 87 (722)
++||+|||||++||+||++|++. |++|+|+|+...+||.+.
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~ 133 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAW 133 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccccccee
Confidence 47999999999999999999986 899999999999988544
No 140
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.14 E-value=6.5e-05 Score=87.69 Aligned_cols=39 Identities=31% Similarity=0.381 Sum_probs=35.8
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCccee
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGR 85 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr 85 (722)
++||+|||||+|||+||..++++|.+|+|+||....||.
T Consensus 7 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~ 45 (588)
T PRK08958 7 EFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSH 45 (588)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence 489999999999999999999999999999998776663
No 141
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.12 E-value=4.4e-05 Score=88.98 Aligned_cols=38 Identities=32% Similarity=0.506 Sum_probs=34.9
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceee
Q 004944 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (722)
Q Consensus 49 dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~ 86 (722)
||+|||||+|||+||..++++|.+|+|+||....||..
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~s 38 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSHT 38 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCcc
Confidence 79999999999999999999999999999988776643
No 142
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.12 E-value=4.1e-05 Score=87.94 Aligned_cols=38 Identities=24% Similarity=0.573 Sum_probs=34.5
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCccee
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGR 85 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr 85 (722)
++||+|||+|+|||+||..+++ |.+|+|+||.+..||.
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~ 40 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSN 40 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCC
Confidence 4899999999999999999976 9999999999887764
No 143
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.11 E-value=4.1e-06 Score=101.41 Aligned_cols=42 Identities=48% Similarity=0.651 Sum_probs=39.5
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeeee
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYT 88 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~T 88 (722)
.++|+|||||+|||+||++|++.|++|+|+|+.+.+||.++.
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~ 578 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKN 578 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeee
Confidence 489999999999999999999999999999999999998753
No 144
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.11 E-value=3.1e-06 Score=103.17 Aligned_cols=41 Identities=39% Similarity=0.519 Sum_probs=39.1
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeee
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (722)
.++|+|||||+|||+||++|+++|++|+|||+.+++||.++
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~ 346 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLR 346 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEE
Confidence 48999999999999999999999999999999999999875
No 145
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.10 E-value=3.3e-06 Score=94.99 Aligned_cols=43 Identities=37% Similarity=0.550 Sum_probs=39.0
Q ss_pred CCCCcEEEECccHHHHHHHHHHHHCCCc-EEEEecCCCcceeee
Q 004944 45 SNKLRVLVIGAGLAGLAAARQLMRLGFR-VTVLEGRKRAGGRVY 87 (722)
Q Consensus 45 ~~~~dVvIVGAGiAGLsAA~~Lak~G~~-V~VLEa~~r~GGr~~ 87 (722)
.+++||+|||||+|||++|++|.++|.. ++||||++++||-=+
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~ 49 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWR 49 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcch
Confidence 4469999999999999999999999998 999999999998433
No 146
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.10 E-value=6e-05 Score=88.32 Aligned_cols=37 Identities=27% Similarity=0.440 Sum_probs=33.7
Q ss_pred CCcEEEECccHHHHHHHHHHHHC--CCcEEEEecCCCcc
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRL--GFRVTVLEGRKRAG 83 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~--G~~V~VLEa~~r~G 83 (722)
.+||+|||||+|||+||..++++ |.+|+|+||.+..+
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~ 49 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKR 49 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCC
Confidence 48999999999999999999998 99999999987543
No 147
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.09 E-value=5.3e-05 Score=86.11 Aligned_cols=34 Identities=41% Similarity=0.654 Sum_probs=32.1
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
++||+|||||+|||+||..+++.|.+|+|+|+..
T Consensus 1 ~~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~ 34 (466)
T PRK08401 1 MMKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI 34 (466)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3799999999999999999999999999999975
No 148
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.08 E-value=2.5e-06 Score=92.42 Aligned_cols=35 Identities=49% Similarity=0.684 Sum_probs=31.0
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCc
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~ 82 (722)
+||+|||||++||++|..|+++|++|+|||+++.+
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDP 36 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence 79999999999999999999999999999997754
No 149
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.08 E-value=3e-06 Score=94.52 Aligned_cols=40 Identities=53% Similarity=0.682 Sum_probs=37.6
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceee
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~ 86 (722)
..+|+|||||.|||+||+.|.+.|++|+|||+++.+||.-
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW 45 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLW 45 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceE
Confidence 3889999999999999999999999999999999999843
No 150
>PRK12831 putative oxidoreductase; Provisional
Probab=98.07 E-value=4.9e-06 Score=94.34 Aligned_cols=42 Identities=38% Similarity=0.672 Sum_probs=39.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeee
Q 004944 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (722)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (722)
..+||+|||||++||+||++|++.|++|+|+|+.+.+||.+.
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 180 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV 180 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeee
Confidence 348999999999999999999999999999999999999774
No 151
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.07 E-value=3.2e-06 Score=95.93 Aligned_cols=41 Identities=41% Similarity=0.593 Sum_probs=38.5
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeee
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (722)
++||+|||||++|++||++|++.|++|+|+|+.+.+||.|.
T Consensus 5 ~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~ 45 (461)
T PRK05249 5 DYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCT 45 (461)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCEEEEEecccccccccc
Confidence 49999999999999999999999999999999889999763
No 152
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.05 E-value=4.2e-06 Score=95.01 Aligned_cols=39 Identities=36% Similarity=0.607 Sum_probs=37.3
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeee
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (722)
+||+|||||++|++||++|++.|++|+|+|+ +.+||.|.
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~ 40 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCL 40 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCcee
Confidence 8999999999999999999999999999999 89999774
No 153
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.04 E-value=5.4e-05 Score=78.65 Aligned_cols=38 Identities=47% Similarity=0.721 Sum_probs=33.7
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCC--Ccce
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK--RAGG 84 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~--r~GG 84 (722)
..||||||||++||.||.+|+.+|++|+|+|... .+||
T Consensus 5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGG 44 (552)
T COG3573 5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGG 44 (552)
T ss_pred cccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccc
Confidence 4899999999999999999999999999999854 3444
No 154
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=98.03 E-value=9.4e-06 Score=90.95 Aligned_cols=75 Identities=36% Similarity=0.436 Sum_probs=59.3
Q ss_pred cccchhhHhHHHHHHHHHHHhhhccccccccccccCCCCCCCCCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcc
Q 004944 4 ESVPKHCHSLLDSAYNYLVSNGYINFGVAPEIKEKIPVEPSSNKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAG 83 (722)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~p~~~~~~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~G 83 (722)
+.-+-+|..+.-.+.+.-.++|++..= ++..... .+|+|||||++||+||+.|+++|++|+|+|+.+.+|
T Consensus 90 ~~~~v~i~~le~~i~d~~~~~g~i~~~--------~~~~~tg--~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~G 159 (457)
T COG0493 90 EELPVNIGALERAIGDKADREGWIPGE--------LPGSRTG--KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDG 159 (457)
T ss_pred CCCchhhhhHHHHHhhHHHHhCCCCCC--------CCCCCCC--CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCc
Confidence 345667777887777777777776542 1211122 889999999999999999999999999999999999
Q ss_pred eeeee
Q 004944 84 GRVYT 88 (722)
Q Consensus 84 Gr~~T 88 (722)
|++..
T Consensus 160 Gll~y 164 (457)
T COG0493 160 GLLLY 164 (457)
T ss_pred eeEEe
Confidence 98864
No 155
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.03 E-value=5.3e-06 Score=88.00 Aligned_cols=39 Identities=38% Similarity=0.654 Sum_probs=35.3
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeee
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (722)
+||+|||||++||+||..|++.|++|+|+|+.+ +||++.
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~ 39 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLT 39 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCccee
Confidence 689999999999999999999999999999976 777543
No 156
>PLN02985 squalene monooxygenase
Probab=98.03 E-value=1.4e-05 Score=91.65 Aligned_cols=37 Identities=38% Similarity=0.538 Sum_probs=33.8
Q ss_pred CCCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCC
Q 004944 45 SNKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (722)
Q Consensus 45 ~~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r 81 (722)
...+||+|||||++||++|+.|+++|++|+|+|+...
T Consensus 41 ~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~ 77 (514)
T PLN02985 41 DGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLR 77 (514)
T ss_pred CCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCC
Confidence 4468999999999999999999999999999999753
No 157
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.00 E-value=5.7e-06 Score=94.00 Aligned_cols=41 Identities=37% Similarity=0.640 Sum_probs=38.4
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeee
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (722)
+|||+|||||.+|++||..+++.|++|+|+|+.+.+||.|-
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~ 43 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCL 43 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeec
Confidence 38999999999999999999999999999999889999764
No 158
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.00 E-value=5.7e-06 Score=93.49 Aligned_cols=40 Identities=38% Similarity=0.579 Sum_probs=37.4
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeee
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (722)
+|||+|||||++|++||..+++.|++|+|+|+ +.+||.|.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~ 41 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCV 41 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceee
Confidence 49999999999999999999999999999999 68999775
No 159
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.99 E-value=5.9e-06 Score=93.46 Aligned_cols=40 Identities=35% Similarity=0.591 Sum_probs=37.0
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeee
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (722)
++||+|||||.+|++||..|++.|++|+|+|+ +.+||.|-
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~-~~~GG~c~ 41 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEA-KKLGGTCV 41 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEecc-ccccccee
Confidence 59999999999999999999999999999999 57898664
No 160
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.99 E-value=5.3e-06 Score=95.17 Aligned_cols=38 Identities=50% Similarity=0.718 Sum_probs=32.9
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCccee
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGR 85 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr 85 (722)
++|+|||||+|||+||..|.+.|++|++||+++.+||-
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~ 39 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGL 39 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGG
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCcc
Confidence 68999999999999999999999999999999999994
No 161
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.98 E-value=7.2e-06 Score=92.49 Aligned_cols=41 Identities=34% Similarity=0.497 Sum_probs=37.3
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCC-cceeee
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR-AGGRVY 87 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r-~GGr~~ 87 (722)
++||+|||||.||++||..|++.|++|+|+|+.+. +||.|-
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~ 44 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCI 44 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeee
Confidence 49999999999999999999999999999999864 688663
No 162
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.96 E-value=9.3e-06 Score=98.01 Aligned_cols=42 Identities=55% Similarity=0.680 Sum_probs=39.5
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeeee
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYT 88 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~T 88 (722)
.++|+|||||+|||+||++|++.|++|+|+|+.+.+||.++.
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~ 580 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKN 580 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceee
Confidence 478999999999999999999999999999999999998753
No 163
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.96 E-value=9.1e-06 Score=91.74 Aligned_cols=41 Identities=34% Similarity=0.562 Sum_probs=37.2
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCC-Ccceeee
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK-RAGGRVY 87 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~-r~GGr~~ 87 (722)
.+||+|||||.+|++||++|++.|++|+|+|+.+ .+||.|.
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~ 44 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCI 44 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEe
Confidence 4999999999999999999999999999999976 4788664
No 164
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.95 E-value=7.3e-06 Score=88.95 Aligned_cols=43 Identities=42% Similarity=0.687 Sum_probs=40.0
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeeeee
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTK 89 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~T~ 89 (722)
..+|+|||||+|||+||..|++.|++|.++|+++.+|||+...
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~ 166 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKL 166 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhh
Confidence 3679999999999999999999999999999999999997654
No 165
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.94 E-value=1.1e-05 Score=93.80 Aligned_cols=41 Identities=27% Similarity=0.447 Sum_probs=37.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeee
Q 004944 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (722)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (722)
+.+||+|||||+|||+||.+|++.|++|+|+|+ +.+||.+.
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~-~~~GG~~~ 43 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEK-DDFGGQIT 43 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEec-CCCCceEE
Confidence 359999999999999999999999999999999 47888765
No 166
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=97.93 E-value=6.6e-06 Score=92.44 Aligned_cols=38 Identities=39% Similarity=0.537 Sum_probs=32.7
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceee
Q 004944 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (722)
Q Consensus 49 dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~ 86 (722)
||||||||++|++||+.++++|.+|+|+|+.+.+||..
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~ 38 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMA 38 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGG
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcc
Confidence 89999999999999999999999999999999999955
No 167
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=97.93 E-value=1.1e-05 Score=90.90 Aligned_cols=36 Identities=42% Similarity=0.577 Sum_probs=33.5
Q ss_pred CCCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 45 SNKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 45 ~~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
..++||+|||||+||++||+.|+++|++|+|+|++.
T Consensus 37 ~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 37 GRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 346999999999999999999999999999999975
No 168
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.93 E-value=1.4e-05 Score=90.42 Aligned_cols=41 Identities=49% Similarity=0.687 Sum_probs=38.6
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeee
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (722)
.++|+|||||++||+||++|++.|++|+|+|+.+.+||.+.
T Consensus 133 ~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 173 (449)
T TIGR01316 133 HKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVT 173 (449)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEee
Confidence 48999999999999999999999999999999999999764
No 169
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.92 E-value=9.6e-06 Score=92.11 Aligned_cols=40 Identities=40% Similarity=0.672 Sum_probs=37.0
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeee
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (722)
++||+|||||++|++||..|++.|++|+|+|+.. +||.|.
T Consensus 4 ~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~ 43 (462)
T PRK06416 4 EYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCL 43 (462)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-ccccee
Confidence 4999999999999999999999999999999966 898764
No 170
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=97.92 E-value=9.7e-06 Score=89.89 Aligned_cols=32 Identities=41% Similarity=0.574 Sum_probs=31.2
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~ 79 (722)
+||+|||||+||++||+.|++.|++|+|+|++
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 69999999999999999999999999999997
No 171
>PRK06116 glutathione reductase; Validated
Probab=97.91 E-value=9.1e-06 Score=91.98 Aligned_cols=40 Identities=33% Similarity=0.630 Sum_probs=36.8
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeee
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (722)
++||+|||||++|++||..|++.|++|+|+|+. .+||-|.
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~ 43 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCV 43 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhh
Confidence 499999999999999999999999999999994 8898663
No 172
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.91 E-value=1.1e-05 Score=91.89 Aligned_cols=41 Identities=27% Similarity=0.547 Sum_probs=37.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeee
Q 004944 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (722)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (722)
+.|||+|||||.+|++||..|++.|++|+|+|+. ++||.|.
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~ 43 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCL 43 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceE
Confidence 3599999999999999999999999999999994 8898764
No 173
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.90 E-value=1.2e-05 Score=92.29 Aligned_cols=39 Identities=31% Similarity=0.499 Sum_probs=35.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcce
Q 004944 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (722)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GG 84 (722)
.++||+|||||++|+++|++|+++|.+|+|||+.+..+|
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~G 43 (502)
T PRK13369 5 ETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQG 43 (502)
T ss_pred cccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCC
Confidence 349999999999999999999999999999999875444
No 174
>PRK07512 L-aspartate oxidase; Provisional
Probab=97.90 E-value=0.00017 Score=82.85 Aligned_cols=33 Identities=39% Similarity=0.448 Sum_probs=30.3
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCC
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r 81 (722)
+.||+|||||+|||+||..++ |.+|+|+||...
T Consensus 9 ~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~ 41 (513)
T PRK07512 9 TGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL 41 (513)
T ss_pred cCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence 489999999999999999996 679999999876
No 175
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.90 E-value=1.3e-05 Score=98.62 Aligned_cols=41 Identities=41% Similarity=0.560 Sum_probs=38.9
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeee
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (722)
.++|+|||||+|||+||++|++.|++|+|||+.+.+||.++
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~ 470 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQ 470 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceee
Confidence 47999999999999999999999999999999999999765
No 176
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.89 E-value=1.3e-05 Score=91.27 Aligned_cols=41 Identities=37% Similarity=0.526 Sum_probs=38.2
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeee
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (722)
++||+|||||.+|++||..|++.|++|+|+|+.+.+||.|.
T Consensus 4 ~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~ 44 (471)
T PRK06467 4 KTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCL 44 (471)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCccccccc
Confidence 59999999999999999999999999999999888998663
No 177
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.88 E-value=1.2e-05 Score=91.21 Aligned_cols=40 Identities=45% Similarity=0.680 Sum_probs=37.0
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeee
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (722)
++||+|||||++|++||.+|++.|++|+|+|+ +.+||.|.
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~ 42 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCL 42 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Ccccccee
Confidence 49999999999999999999999999999999 78888653
No 178
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.87 E-value=1.8e-05 Score=88.47 Aligned_cols=43 Identities=23% Similarity=0.356 Sum_probs=38.4
Q ss_pred CCcEEEECccHHHHHHHHHHH-HCCCcEEEEecCCCcceeeeee
Q 004944 47 KLRVLVIGAGLAGLAAARQLM-RLGFRVTVLEGRKRAGGRVYTK 89 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~La-k~G~~V~VLEa~~r~GGr~~T~ 89 (722)
..+|+|||||+|||+||.+|. +.|++|+|||+.+.+||.++..
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~G 82 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYG 82 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEe
Confidence 378999999999999999765 6799999999999999988754
No 179
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=97.87 E-value=0.00037 Score=76.58 Aligned_cols=40 Identities=18% Similarity=0.341 Sum_probs=35.6
Q ss_pred CCCcEEEECccHHHHHHHHHHHHC--CCcEEEEecCCCccee
Q 004944 46 NKLRVLVIGAGLAGLAAARQLMRL--GFRVTVLEGRKRAGGR 85 (722)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~--G~~V~VLEa~~r~GGr 85 (722)
+++|||+|||||.|.+.++.|++. ..+|+|+|+-+.++.-
T Consensus 2 ~~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~~A~E 43 (488)
T PF06039_consen 2 KEYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDSVALE 43 (488)
T ss_pred CceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCcchhh
Confidence 359999999999999999999997 5789999999988753
No 180
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.87 E-value=1.3e-05 Score=88.85 Aligned_cols=35 Identities=37% Similarity=0.582 Sum_probs=33.1
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCC
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r 81 (722)
.+||+|||||++||++|..|+++|++|+|+|+++.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 38999999999999999999999999999999874
No 181
>PRK06370 mercuric reductase; Validated
Probab=97.87 E-value=1.5e-05 Score=90.67 Aligned_cols=41 Identities=34% Similarity=0.547 Sum_probs=36.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeee
Q 004944 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (722)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (722)
+++||+|||||++|++||.+|++.|++|+|+|+. .+||.|.
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~ 44 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCV 44 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCcee
Confidence 3599999999999999999999999999999984 6787664
No 182
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.87 E-value=1.8e-05 Score=95.26 Aligned_cols=41 Identities=41% Similarity=0.608 Sum_probs=38.6
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeee
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (722)
.++|+|||||+|||+||++|++.|++|+|||+.+.+||.+.
T Consensus 431 ~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 471 (752)
T PRK12778 431 GKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLK 471 (752)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 48999999999999999999999999999999999999764
No 183
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.86 E-value=1.8e-05 Score=93.73 Aligned_cols=41 Identities=46% Similarity=0.609 Sum_probs=38.8
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeee
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (722)
.++|+|||||+|||+||++|++.|++|+|+|+.+.+||.+.
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~ 367 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLT 367 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceee
Confidence 47999999999999999999999999999999999999765
No 184
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=97.86 E-value=1.4e-05 Score=85.92 Aligned_cols=36 Identities=42% Similarity=0.708 Sum_probs=33.4
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCc
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~ 82 (722)
+.+||||||||+||++|..|.++|++|+|||++..+
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDP 37 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 478999999999999999999999999999997654
No 185
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.86 E-value=0.00049 Score=71.47 Aligned_cols=39 Identities=41% Similarity=0.606 Sum_probs=35.9
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeee
Q 004944 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (722)
Q Consensus 49 dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (722)
.|||||+|+|||+|+..|...|-.|+++|+...+||..-
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSi 49 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSI 49 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcce
Confidence 499999999999999999999888999999999999653
No 186
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.86 E-value=1.3e-05 Score=88.84 Aligned_cols=36 Identities=44% Similarity=0.629 Sum_probs=33.7
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcce
Q 004944 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (722)
Q Consensus 49 dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GG 84 (722)
||+|||||+|||++|+.|++.|++|+|+|+++.+||
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~ 36 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPG 36 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCC
Confidence 799999999999999999999999999999877664
No 187
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=97.86 E-value=1.4e-05 Score=88.94 Aligned_cols=36 Identities=39% Similarity=0.576 Sum_probs=33.1
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcc
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAG 83 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~G 83 (722)
+||+|||||+||++||+.|+++|++|+|+|++...+
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~ 36 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNA 36 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence 589999999999999999999999999999976543
No 188
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.84 E-value=2.2e-05 Score=92.81 Aligned_cols=41 Identities=44% Similarity=0.679 Sum_probs=38.8
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeee
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (722)
.++|+|||||++||+||++|++.|++|+|+|+++++||.++
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~ 233 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMR 233 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence 47999999999999999999999999999999999999774
No 189
>PRK10262 thioredoxin reductase; Provisional
Probab=97.83 E-value=1.9e-05 Score=85.17 Aligned_cols=41 Identities=27% Similarity=0.524 Sum_probs=36.6
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeee
Q 004944 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (722)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (722)
+.+||+|||||+|||+||.+|++.|++|+|+|+ ..+||.+.
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~-~~~gg~~~ 45 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITG-MEKGGQLT 45 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEe-ecCCCcee
Confidence 459999999999999999999999999999996 46788654
No 190
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.82 E-value=1.8e-05 Score=89.93 Aligned_cols=40 Identities=38% Similarity=0.570 Sum_probs=36.9
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeee
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (722)
++||+|||||++|++||.+|++.|.+|+|+|+ +.+||.|.
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~-~~~GG~c~ 43 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEK-KYWGGVCL 43 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCcee
Confidence 48999999999999999999999999999998 57888774
No 191
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=97.82 E-value=1.9e-05 Score=90.80 Aligned_cols=40 Identities=35% Similarity=0.618 Sum_probs=36.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceee
Q 004944 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (722)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~ 86 (722)
.++|||||||| +||+||+++++.|.+|+|||+.+..||..
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t 45 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTT 45 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCcce
Confidence 35899999999 99999999999999999999999888854
No 192
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.81 E-value=1.9e-05 Score=92.23 Aligned_cols=41 Identities=51% Similarity=0.688 Sum_probs=38.9
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeee
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (722)
.++|+|||+|+|||+||-+|-++|+.|+|+|++||+||.+.
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ 1825 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLM 1825 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceee
Confidence 38899999999999999999999999999999999999775
No 193
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.80 E-value=2.4e-05 Score=96.65 Aligned_cols=43 Identities=44% Similarity=0.639 Sum_probs=40.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeeee
Q 004944 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYT 88 (722)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~T 88 (722)
..+||+|||||+|||+||.+|++.|++|+|+|+.+++||.+..
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~ 204 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLS 204 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeec
Confidence 3589999999999999999999999999999999999998864
No 194
>PRK14694 putative mercuric reductase; Provisional
Probab=97.80 E-value=2.2e-05 Score=89.38 Aligned_cols=41 Identities=39% Similarity=0.551 Sum_probs=37.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeee
Q 004944 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (722)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (722)
+++||+|||||++|++||..|++.|++|+|+|+. .+||-|.
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~ 45 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCV 45 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-cccccee
Confidence 4599999999999999999999999999999985 7898764
No 195
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.80 E-value=3e-05 Score=88.23 Aligned_cols=41 Identities=51% Similarity=0.712 Sum_probs=38.5
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeee
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (722)
.++|+|||||++||+||++|++.|++|+|+|+.+.+||.++
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 183 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLR 183 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceee
Confidence 47999999999999999999999999999999999998764
No 196
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.80 E-value=2.7e-05 Score=88.28 Aligned_cols=42 Identities=50% Similarity=0.771 Sum_probs=38.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeee
Q 004944 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (722)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (722)
..++|+|||||++||+||+.|++.|++|+|+|+.+.+||...
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~ 180 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLR 180 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEee
Confidence 348999999999999999999999999999999999998754
No 197
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.76 E-value=2.4e-05 Score=88.83 Aligned_cols=39 Identities=33% Similarity=0.517 Sum_probs=35.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeee
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (722)
+||+|||||++|++||..|++.|++|+|+|+.. +||.|-
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~ 39 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCV 39 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCee
Confidence 699999999999999999999999999999854 888653
No 198
>PTZ00058 glutathione reductase; Provisional
Probab=97.76 E-value=3.8e-05 Score=88.80 Aligned_cols=42 Identities=33% Similarity=0.485 Sum_probs=38.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeeee
Q 004944 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYT 88 (722)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~T 88 (722)
.+|||+|||||.+|++||..+++.|.+|+|+|+. .+||.|-.
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln 88 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVN 88 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccc
Confidence 3589999999999999999999999999999995 79997743
No 199
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.75 E-value=3e-05 Score=92.61 Aligned_cols=39 Identities=33% Similarity=0.454 Sum_probs=35.7
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCccee
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGR 85 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr 85 (722)
.++|+|||||+|||+||++|++.|++|+|+|+.+..|+-
T Consensus 383 gKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~ 421 (1028)
T PRK06567 383 NYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLP 421 (1028)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccc
Confidence 489999999999999999999999999999998776653
No 200
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.75 E-value=5.4e-05 Score=89.41 Aligned_cols=41 Identities=41% Similarity=0.599 Sum_probs=38.8
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeee
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (722)
.++|+|||||++||+||+.|++.|++|+|||+.+++||.+.
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~ 350 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLT 350 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeee
Confidence 48899999999999999999999999999999999999765
No 201
>PRK14727 putative mercuric reductase; Provisional
Probab=97.75 E-value=3.7e-05 Score=87.72 Aligned_cols=41 Identities=41% Similarity=0.597 Sum_probs=38.8
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeee
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (722)
++||+|||||.+|++||+.|++.|.+|+|+|+.+.+||.|.
T Consensus 16 ~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~ 56 (479)
T PRK14727 16 QLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCV 56 (479)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEec
Confidence 49999999999999999999999999999999889999765
No 202
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=97.74 E-value=3e-05 Score=91.12 Aligned_cols=39 Identities=33% Similarity=0.526 Sum_probs=35.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcce
Q 004944 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (722)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GG 84 (722)
+++||+|||||+.|+++|+.|++.|++|+|+|+.+..+|
T Consensus 70 ~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~G 108 (627)
T PLN02464 70 EPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSG 108 (627)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCC
Confidence 458999999999999999999999999999999865555
No 203
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=3e-05 Score=82.62 Aligned_cols=42 Identities=33% Similarity=0.534 Sum_probs=33.9
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeeee
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYT 88 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~T 88 (722)
.+||+|||||++||+||.+++++|.+++|++....+||....
T Consensus 3 ~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~ 44 (305)
T COG0492 3 IYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTK 44 (305)
T ss_pred eeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCcccc
Confidence 599999999999999999999999994444444777765443
No 204
>PRK13748 putative mercuric reductase; Provisional
Probab=97.72 E-value=3.2e-05 Score=90.07 Aligned_cols=40 Identities=43% Similarity=0.558 Sum_probs=37.2
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeee
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (722)
.+||+|||||.+|++||..|++.|.+|+|+|+. .+||-|.
T Consensus 98 ~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~ 137 (561)
T PRK13748 98 PLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCV 137 (561)
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeecc
Confidence 499999999999999999999999999999996 8998664
No 205
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.71 E-value=3.8e-05 Score=89.18 Aligned_cols=40 Identities=28% Similarity=0.509 Sum_probs=37.6
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceee
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~ 86 (722)
++||+|||+|++||+||+.|+++|.+|+|||+.+..||.+
T Consensus 6 ~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~ 45 (557)
T PRK12844 6 TYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGST 45 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcee
Confidence 5899999999999999999999999999999998888854
No 206
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.70 E-value=4.9e-05 Score=86.39 Aligned_cols=41 Identities=46% Similarity=0.622 Sum_probs=38.8
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeee
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (722)
.++|+|||||++||+||++|++.|++|+|+|+.+.+||.++
T Consensus 141 ~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~ 181 (467)
T TIGR01318 141 GKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLT 181 (467)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence 48999999999999999999999999999999999999775
No 207
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=97.70 E-value=2.9e-05 Score=82.85 Aligned_cols=43 Identities=40% Similarity=0.672 Sum_probs=37.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHHC------CCcEEEEecCCCcceeeee
Q 004944 46 NKLRVLVIGAGLAGLAAARQLMRL------GFRVTVLEGRKRAGGRVYT 88 (722)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~------G~~V~VLEa~~r~GGr~~T 88 (722)
+.+||+|||||.|||+||..|.+. ..+|+|+|+...+||.+-|
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlS 123 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLS 123 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceec
Confidence 458999999999999999998774 3579999999999997765
No 208
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=97.68 E-value=4e-05 Score=88.15 Aligned_cols=39 Identities=31% Similarity=0.468 Sum_probs=35.5
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecC-CCccee
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR-KRAGGR 85 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~-~r~GGr 85 (722)
++||+|||||+||+.||+.+++.|++|+|+|.+ +.+|+.
T Consensus 4 ~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m 43 (618)
T PRK05192 4 EYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQM 43 (618)
T ss_pred cceEEEECchHHHHHHHHHHHHcCCcEEEEeccccccccc
Confidence 499999999999999999999999999999997 477753
No 209
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.68 E-value=4.5e-05 Score=84.10 Aligned_cols=37 Identities=46% Similarity=0.462 Sum_probs=33.9
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcc
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAG 83 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~G 83 (722)
+.||+|||||++|+.||+.|++.|++|+|+|+.+...
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~ 38 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKK 38 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccC
Confidence 3789999999999999999999999999999977654
No 210
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.67 E-value=4e-05 Score=87.35 Aligned_cols=32 Identities=41% Similarity=0.688 Sum_probs=31.1
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEec
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEG 78 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa 78 (722)
.+||+|||||++|++||.+|++.|.+|+|+|+
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 49999999999999999999999999999998
No 211
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.67 E-value=4.3e-05 Score=87.59 Aligned_cols=32 Identities=31% Similarity=0.527 Sum_probs=30.9
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEec
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEG 78 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa 78 (722)
.|||+|||||.+|++||.+|++.|.+|+|+|+
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~ 36 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDY 36 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 48999999999999999999999999999997
No 212
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.66 E-value=4.1e-05 Score=84.32 Aligned_cols=36 Identities=39% Similarity=0.705 Sum_probs=33.9
Q ss_pred cEEEECccHHHHHHHHHHHHC--CCcEEEEecCCCcce
Q 004944 49 RVLVIGAGLAGLAAARQLMRL--GFRVTVLEGRKRAGG 84 (722)
Q Consensus 49 dVvIVGAGiAGLsAA~~Lak~--G~~V~VLEa~~r~GG 84 (722)
||+|||||+|||++|+.|+++ |++|+|+|+.+.+||
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~ 38 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGG 38 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence 799999999999999999997 999999999987776
No 213
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=97.63 E-value=0.00025 Score=79.93 Aligned_cols=51 Identities=18% Similarity=0.133 Sum_probs=38.9
Q ss_pred HHHHHHHHH-----cCCcccCceEEEEEecCCc-EEEEECCEEEEeCEEEEcCChhh
Q 004944 247 GRLVQALVE-----NVPILYEKTVHTIRYGSDG-VQVLAGSQVFEGDMVLCTVPLGV 297 (722)
Q Consensus 247 ~~L~~aLa~-----~l~I~ln~~V~~I~~~~~~-v~V~~~G~~~~AD~VI~AvP~~~ 297 (722)
..++.+|+. |..|..||+|++|....++ +.|.|.-..+++.+||-|+....
T Consensus 187 ~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 187 AGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHGSIETECVVNAAGVWA 243 (856)
T ss_pred HHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCcceecceEEechhHHH
Confidence 455666654 5679999999999987665 56777556788999999988654
No 214
>PTZ00367 squalene epoxidase; Provisional
Probab=97.62 E-value=5e-05 Score=87.86 Aligned_cols=35 Identities=29% Similarity=0.474 Sum_probs=32.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
..+||+|||||++|+++|+.|+++|++|+|+|+..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 35999999999999999999999999999999964
No 215
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.62 E-value=5.8e-05 Score=87.65 Aligned_cols=41 Identities=32% Similarity=0.519 Sum_probs=38.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceee
Q 004944 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (722)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~ 86 (722)
+++||+|||+|.+|++||..++++|.+|+|||+...+||.+
T Consensus 6 ~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~ 46 (557)
T PRK07843 6 QEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGST 46 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCccc
Confidence 45999999999999999999999999999999999888754
No 216
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.62 E-value=7.8e-05 Score=85.11 Aligned_cols=41 Identities=51% Similarity=0.707 Sum_probs=38.7
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeee
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (722)
.++|+|||||++||+||++|++.|++|+|+|+.+++||.+.
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~ 183 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLM 183 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence 37999999999999999999999999999999999999775
No 217
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.62 E-value=0.0043 Score=67.86 Aligned_cols=49 Identities=18% Similarity=0.166 Sum_probs=37.5
Q ss_pred HHHHHHHHH-cCCcccCceEEEEEecCCcEE-EEE-CCEEEEeCEEEEcCCh
Q 004944 247 GRLVQALVE-NVPILYEKTVHTIRYGSDGVQ-VLA-GSQVFEGDMVLCTVPL 295 (722)
Q Consensus 247 ~~L~~aLa~-~l~I~ln~~V~~I~~~~~~v~-V~~-~G~~~~AD~VI~AvP~ 295 (722)
..|.+.|.+ |++|+++++|..|...++.+. |.+ +|+++.+|+||+|+.-
T Consensus 177 kni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Gr 228 (486)
T COG2509 177 KNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGR 228 (486)
T ss_pred HHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCc
Confidence 333344433 578999999999999988654 444 8889999999999874
No 218
>PLN02507 glutathione reductase
Probab=97.61 E-value=6e-05 Score=86.39 Aligned_cols=32 Identities=38% Similarity=0.539 Sum_probs=31.0
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEec
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEG 78 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa 78 (722)
+|||+|||||.+|++||..+++.|.+|+|+|+
T Consensus 25 ~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~ 56 (499)
T PLN02507 25 DFDLFVIGAGSGGVRAARFSANFGAKVGICEL 56 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 58999999999999999999999999999996
No 219
>PLN02815 L-aspartate oxidase
Probab=97.60 E-value=7.7e-05 Score=86.91 Aligned_cols=39 Identities=28% Similarity=0.486 Sum_probs=35.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCccee
Q 004944 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGR 85 (722)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr 85 (722)
.++||+|||||+|||+||..+++.| +|+|+||....||.
T Consensus 28 ~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~ 66 (594)
T PLN02815 28 KYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESN 66 (594)
T ss_pred cccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCc
Confidence 3589999999999999999999999 99999999887773
No 220
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.59 E-value=6.2e-05 Score=87.94 Aligned_cols=38 Identities=32% Similarity=0.425 Sum_probs=35.3
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcce
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GG 84 (722)
+.||+|||||+|||+||..++++|.+|+|+||....||
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g 40 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRS 40 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCC
Confidence 37999999999999999999999999999999887666
No 221
>PRK07804 L-aspartate oxidase; Provisional
Probab=97.58 E-value=6.4e-05 Score=87.02 Aligned_cols=39 Identities=38% Similarity=0.532 Sum_probs=36.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcce
Q 004944 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (722)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GG 84 (722)
..+||+|||||+|||+||..+++.|.+|+|+||....||
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g 53 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDG 53 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCC
Confidence 459999999999999999999999999999999988776
No 222
>PRK07395 L-aspartate oxidase; Provisional
Probab=97.58 E-value=7.1e-05 Score=86.71 Aligned_cols=40 Identities=33% Similarity=0.409 Sum_probs=35.4
Q ss_pred CCCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCccee
Q 004944 45 SNKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGR 85 (722)
Q Consensus 45 ~~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr 85 (722)
...+||+|||||+|||+||..++ .|.+|+|+||.+..||.
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg~ 46 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTSA 46 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCCc
Confidence 34589999999999999999996 59999999999887774
No 223
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.57 E-value=0.00011 Score=85.77 Aligned_cols=41 Identities=46% Similarity=0.673 Sum_probs=38.5
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeee
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (722)
..+|+|||||++||+||+.|++.|++|+|+|+.+.+||.++
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~ 177 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMR 177 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 47899999999999999999999999999999999999664
No 224
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.56 E-value=0.00044 Score=78.22 Aligned_cols=33 Identities=39% Similarity=0.627 Sum_probs=27.8
Q ss_pred cEEEECccHHHHHHHHHHHHCC---CcEEEEecCCC
Q 004944 49 RVLVIGAGLAGLAAARQLMRLG---FRVTVLEGRKR 81 (722)
Q Consensus 49 dVvIVGAGiAGLsAA~~Lak~G---~~V~VLEa~~r 81 (722)
||||||||.||..+|..|++.+ ++|+|+|+.+.
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~ 36 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDI 36 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCC
Confidence 7999999999999999999998 89999999754
No 225
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.56 E-value=8.8e-05 Score=86.71 Aligned_cols=40 Identities=35% Similarity=0.516 Sum_probs=36.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCccee
Q 004944 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGR 85 (722)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr 85 (722)
..+||+|||||+|||+||..++++|.+|+|+||....||.
T Consensus 11 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~ 50 (591)
T PRK07057 11 RKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSH 50 (591)
T ss_pred ccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCC
Confidence 3489999999999999999999999999999998776663
No 226
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.55 E-value=7.5e-05 Score=86.88 Aligned_cols=38 Identities=34% Similarity=0.580 Sum_probs=35.3
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcce
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GG 84 (722)
.+||+|||||+|||+||..++++|.+|+|+||....||
T Consensus 5 ~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g 42 (566)
T PRK06452 5 EYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRS 42 (566)
T ss_pred cCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCC
Confidence 48999999999999999999999999999999877666
No 227
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.54 E-value=8e-05 Score=82.57 Aligned_cols=36 Identities=44% Similarity=0.475 Sum_probs=33.5
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcce
Q 004944 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (722)
Q Consensus 49 dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GG 84 (722)
||+|||||++|+.||+.|++.|++|+|+|+++..|-
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~ 37 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLT 37 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccC
Confidence 799999999999999999999999999999887653
No 228
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=97.52 E-value=8.2e-05 Score=87.44 Aligned_cols=39 Identities=31% Similarity=0.388 Sum_probs=35.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcce
Q 004944 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (722)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GG 84 (722)
.++||+|||||+|||+||..++++|.+|+|+||....||
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g 87 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRS 87 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCC
Confidence 348999999999999999999999999999999877666
No 229
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.51 E-value=2.8e-05 Score=75.90 Aligned_cols=66 Identities=27% Similarity=0.583 Sum_probs=49.6
Q ss_pred CcEEEECccHHHHHHHHHHHHC--CCcEEEEecCCCcceeeeeeecCCCCCCCcceEeeccceEEcCC-CCcHHHHHHHH
Q 004944 48 LRVLVIGAGLAGLAAARQLMRL--GFRVTVLEGRKRAGGRVYTKKMEGGAGNRISASADLGGSVLTGT-LGNPLGILAKQ 124 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~--G~~V~VLEa~~r~GGr~~T~~~~g~~gn~~~~~~D~Ga~~~~~~-~~~~l~~L~~e 124 (722)
.||+|||||-+||+|||+++++ ..+|.|+|++-.+||-++ +|++.|... -..|-..+++|
T Consensus 77 sDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaW-----------------LGGQLFSAMvvRKPAhLFL~E 139 (328)
T KOG2960|consen 77 SDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAW-----------------LGGQLFSAMVVRKPAHLFLQE 139 (328)
T ss_pred cceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCccc-----------------ccchhhhhhhhcChHHHHHHH
Confidence 6999999999999999999976 578999999999997443 233333321 12445557899
Q ss_pred hCCCee
Q 004944 125 LGSLLH 130 (722)
Q Consensus 125 LGl~~~ 130 (722)
+|++..
T Consensus 140 igvpYe 145 (328)
T KOG2960|consen 140 IGVPYE 145 (328)
T ss_pred hCCCcc
Confidence 999854
No 230
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=97.51 E-value=8.9e-05 Score=87.00 Aligned_cols=39 Identities=31% Similarity=0.467 Sum_probs=35.9
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCccee
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGR 85 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr 85 (722)
++||+|||||+|||+||..++++|.+|+|+||....||.
T Consensus 29 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~ 67 (617)
T PTZ00139 29 TYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSH 67 (617)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCC
Confidence 489999999999999999999999999999998876663
No 231
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.49 E-value=0.00015 Score=79.26 Aligned_cols=41 Identities=44% Similarity=0.613 Sum_probs=38.5
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeee
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (722)
..+|+|||||++||+||..|++.|++|+|+|+.+.+||.+.
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~ 58 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLML 58 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceee
Confidence 37899999999999999999999999999999999999765
No 232
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.48 E-value=7.7e-05 Score=79.35 Aligned_cols=35 Identities=31% Similarity=0.495 Sum_probs=30.1
Q ss_pred CcEEEECccHHHHHHHHHHHHCC-CcEEEEecCCCc
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLG-FRVTVLEGRKRA 82 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G-~~V~VLEa~~r~ 82 (722)
|||||||||.+|..+|.+|+++| .+|+|||+..+.
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~ 36 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRY 36 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSC
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccC
Confidence 69999999999999999999998 699999996653
No 233
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.47 E-value=0.00011 Score=86.14 Aligned_cols=39 Identities=28% Similarity=0.405 Sum_probs=35.5
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCccee
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGR 85 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr 85 (722)
.+||+|||||+|||+||..+++.|.+|+|+||....||.
T Consensus 12 ~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~ 50 (598)
T PRK09078 12 KYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSH 50 (598)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcc
Confidence 489999999999999999999999999999998766653
No 234
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.47 E-value=0.00012 Score=83.63 Aligned_cols=41 Identities=34% Similarity=0.504 Sum_probs=36.2
Q ss_pred CCcEEEECccHHHHHHHHHHHHC-CCcEEEEecC--------CCcceeee
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRL-GFRVTVLEGR--------KRAGGRVY 87 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~-G~~V~VLEa~--------~r~GGr~~ 87 (722)
+|||+|||||.+|.+||..+++. |.+|+|+|+. +.+||-|-
T Consensus 3 ~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCl 52 (486)
T TIGR01423 3 AFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCV 52 (486)
T ss_pred ccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeec
Confidence 49999999999999999999997 9999999984 56777653
No 235
>PLN02546 glutathione reductase
Probab=97.47 E-value=0.00011 Score=84.91 Aligned_cols=32 Identities=31% Similarity=0.449 Sum_probs=30.9
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEec
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEG 78 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa 78 (722)
+|||+|||||.+|+.||..+++.|++|+|+|+
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 48999999999999999999999999999996
No 236
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.46 E-value=0.00012 Score=72.78 Aligned_cols=33 Identities=42% Similarity=0.639 Sum_probs=30.7
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEecCCC
Q 004944 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (722)
Q Consensus 49 dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r 81 (722)
||+|||||+|||+||.+|++.|.+|+|+|+.+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~ 33 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPG 33 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 799999999999999999999999999988653
No 237
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.45 E-value=0.00014 Score=81.67 Aligned_cols=41 Identities=41% Similarity=0.663 Sum_probs=38.5
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeee
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (722)
+||++|||||.+|.+||.++++.|.+|.|+|+..++||-|-
T Consensus 4 ~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCl 44 (454)
T COG1249 4 EYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCL 44 (454)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEE
Confidence 59999999999999999999999999999999889998774
No 238
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.43 E-value=0.00012 Score=85.39 Aligned_cols=39 Identities=31% Similarity=0.463 Sum_probs=35.7
Q ss_pred CCcEEEECccHHHHHHHHHHHHCC---CcEEEEecCCCccee
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLG---FRVTVLEGRKRAGGR 85 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G---~~V~VLEa~~r~GGr 85 (722)
++||+|||||+|||+||..++++| .+|+|+||....||.
T Consensus 5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~ 46 (577)
T PRK06069 5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSH 46 (577)
T ss_pred ecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCC
Confidence 489999999999999999999998 899999998877763
No 239
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=97.42 E-value=0.00018 Score=90.38 Aligned_cols=41 Identities=39% Similarity=0.572 Sum_probs=38.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceee
Q 004944 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (722)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~ 86 (722)
..+||||||+|.|||+||...+++|.+|+|+||.+..||..
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s 448 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNS 448 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCch
Confidence 35899999999999999999999999999999999999854
No 240
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=97.42 E-value=0.00013 Score=86.17 Aligned_cols=38 Identities=37% Similarity=0.385 Sum_probs=35.1
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcce
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GG 84 (722)
.+||+|||||+|||+||..++++|.+|+|+|+....+|
T Consensus 5 ~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~s 42 (657)
T PRK08626 5 YTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKRS 42 (657)
T ss_pred eccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCCc
Confidence 48999999999999999999999999999999877655
No 241
>PRK13984 putative oxidoreductase; Provisional
Probab=97.42 E-value=0.00019 Score=84.30 Aligned_cols=42 Identities=38% Similarity=0.638 Sum_probs=38.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeee
Q 004944 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (722)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (722)
+..+|+|||||.+||+||+.|++.|++|+|||+.+.+||...
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~ 323 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMR 323 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEe
Confidence 347899999999999999999999999999999999998654
No 242
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=97.40 E-value=0.00025 Score=59.87 Aligned_cols=35 Identities=43% Similarity=0.638 Sum_probs=33.0
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcc
Q 004944 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAG 83 (722)
Q Consensus 49 dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~G 83 (722)
+|+|||||..|+-.|..|++.|.+|+|+|+++++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 58999999999999999999999999999998765
No 243
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.39 E-value=0.0001 Score=80.47 Aligned_cols=38 Identities=32% Similarity=0.497 Sum_probs=29.7
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEE-ecCCCcceee
Q 004944 49 RVLVIGAGLAGLAAARQLMRLGFRVTVL-EGRKRAGGRV 86 (722)
Q Consensus 49 dVvIVGAGiAGLsAA~~Lak~G~~V~VL-Ea~~r~GGr~ 86 (722)
||+|||||+||+.||+.+++.|.+|+|+ +..+.+|...
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~ 39 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMS 39 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--S
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeeccccccccc
Confidence 7999999999999999999999999999 5666666443
No 244
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.37 E-value=0.00018 Score=84.47 Aligned_cols=41 Identities=34% Similarity=0.580 Sum_probs=37.1
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecC-CCcceeee
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR-KRAGGRVY 87 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~-~r~GGr~~ 87 (722)
+|||+|||||.+|++||..+++.|.+|+|+|+. +.+||-|-
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCv 157 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCV 157 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccccee
Confidence 589999999999999999999999999999974 47888664
No 245
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.34 E-value=0.00019 Score=82.24 Aligned_cols=37 Identities=24% Similarity=0.334 Sum_probs=35.3
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcce
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GG 84 (722)
+||+|||||++|+++|++|+++|++|+|+|+....||
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~ 37 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSF 37 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCC
Confidence 6999999999999999999999999999999988875
No 246
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=97.34 E-value=0.00017 Score=84.12 Aligned_cols=38 Identities=24% Similarity=0.326 Sum_probs=34.4
Q ss_pred CCcEEEECccHHHHHHHHHHHHCC--CcEEEEecCCCcce
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLG--FRVTVLEGRKRAGG 84 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G--~~V~VLEa~~r~GG 84 (722)
.+||+|||||+|||+||..++++| .+|+|+||....||
T Consensus 4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g 43 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRS 43 (582)
T ss_pred eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence 389999999999999999999874 79999999887776
No 247
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.33 E-value=0.00019 Score=83.24 Aligned_cols=38 Identities=32% Similarity=0.336 Sum_probs=33.4
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCC-ccee
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR-AGGR 85 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r-~GGr 85 (722)
.+||+|||||.|||+||..+ +.|.+|+|+||... .||.
T Consensus 7 ~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~ 45 (543)
T PRK06263 7 ITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGC 45 (543)
T ss_pred ccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCcc
Confidence 48999999999999999999 99999999999764 3443
No 248
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=97.31 E-value=0.0002 Score=83.44 Aligned_cols=40 Identities=28% Similarity=0.285 Sum_probs=35.6
Q ss_pred CCcEEEECccHHHHHHHHHHHHC--CCcEEEEecCCCcceee
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRL--GFRVTVLEGRKRAGGRV 86 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~--G~~V~VLEa~~r~GGr~ 86 (722)
.+||+|||||+|||+||..++++ |.+|+|+||....||.+
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s 44 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHT 44 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCc
Confidence 38999999999999999999987 57999999998877743
No 249
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=97.29 E-value=0.00032 Score=74.54 Aligned_cols=34 Identities=41% Similarity=0.574 Sum_probs=32.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecC
Q 004944 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (722)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~ 79 (722)
...||||||||++|-+-|+.|+|.|.+|.|+|+.
T Consensus 44 ~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 44 GAADVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred CcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 3489999999999999999999999999999994
No 250
>PRK08275 putative oxidoreductase; Provisional
Probab=97.28 E-value=0.00022 Score=82.83 Aligned_cols=37 Identities=35% Similarity=0.419 Sum_probs=33.2
Q ss_pred CCcEEEECccHHHHHHHHHHHHC--CCcEEEEecCCCcc
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRL--GFRVTVLEGRKRAG 83 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~--G~~V~VLEa~~r~G 83 (722)
.+||+|||||+|||+||..++++ |.+|+|+||....+
T Consensus 9 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~ 47 (554)
T PRK08275 9 ETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKR 47 (554)
T ss_pred ecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCC
Confidence 48999999999999999999987 68999999987643
No 251
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.28 E-value=0.00026 Score=80.42 Aligned_cols=38 Identities=34% Similarity=0.528 Sum_probs=34.5
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeee
Q 004944 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (722)
Q Consensus 49 dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (722)
+|+|||||.+|++||..|++.|.+|+|+|+. .+||-|-
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~-~~GG~c~ 39 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEA-DLGGTCL 39 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC-cccccCC
Confidence 7999999999999999999999999999985 5777654
No 252
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.25 E-value=0.00029 Score=80.47 Aligned_cols=33 Identities=36% Similarity=0.560 Sum_probs=31.3
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecC
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~ 79 (722)
.+||+|||||.+|+.||+.+++.|.+|+|+|+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 389999999999999999999999999999974
No 253
>PRK09077 L-aspartate oxidase; Provisional
Probab=97.23 E-value=0.0003 Score=81.44 Aligned_cols=38 Identities=39% Similarity=0.515 Sum_probs=34.6
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCccee
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGR 85 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr 85 (722)
.+||+|||+|+|||+||..+++. .+|+|+||....||.
T Consensus 8 ~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~ 45 (536)
T PRK09077 8 QCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGS 45 (536)
T ss_pred cCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCC
Confidence 48999999999999999999986 899999998887773
No 254
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.23 E-value=0.00029 Score=84.95 Aligned_cols=34 Identities=38% Similarity=0.537 Sum_probs=31.5
Q ss_pred CcEEEECccHHHHHHHHHHHHC--CCcEEEEecCCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRL--GFRVTVLEGRKR 81 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~--G~~V~VLEa~~r 81 (722)
++|+|||||++||+||+.|++. |++|+|||+++.
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 4799999999999999999998 899999999764
No 255
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.22 E-value=0.00033 Score=79.66 Aligned_cols=40 Identities=38% Similarity=0.542 Sum_probs=36.1
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeee
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (722)
+.||+|||||.+|+.||..|++.|.+|+|+|+. .+||.|-
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~-~~gG~c~ 40 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQLGADVTVIERD-GLGGAAV 40 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCCccc
Confidence 368999999999999999999999999999985 5888764
No 256
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.19 E-value=0.0004 Score=77.44 Aligned_cols=34 Identities=47% Similarity=0.644 Sum_probs=32.0
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
++||+|||||++|++||+.|+++|++|+|+|+..
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 4899999999999999999999999999999863
No 257
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=97.17 E-value=0.00043 Score=73.52 Aligned_cols=45 Identities=27% Similarity=0.330 Sum_probs=39.8
Q ss_pred CcEEEECccHHHHHHHHHHHHC--CCcEEEEecCCCcceeeeeeecC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRL--GFRVTVLEGRKRAGGRVYTKKME 92 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~--G~~V~VLEa~~r~GGr~~T~~~~ 92 (722)
+.|+|||+|+||+++|+.|.++ +++|+|+|+.+.|+|.++...-.
T Consensus 21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGVAP 67 (468)
T KOG1800|consen 21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGVAP 67 (468)
T ss_pred ceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeeccCC
Confidence 6899999999999999999995 68999999999999988765433
No 258
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.16 E-value=0.00039 Score=81.28 Aligned_cols=37 Identities=30% Similarity=0.330 Sum_probs=33.0
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcce
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GG 84 (722)
.+||+|||||+|||+||+.+++. .+|+|+||....||
T Consensus 5 ~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g 41 (583)
T PRK08205 5 RYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRS 41 (583)
T ss_pred eccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCC
Confidence 48999999999999999999986 89999999875554
No 259
>PRK02106 choline dehydrogenase; Validated
Probab=97.15 E-value=0.00043 Score=80.60 Aligned_cols=34 Identities=32% Similarity=0.436 Sum_probs=32.3
Q ss_pred CCcEEEECccHHHHHHHHHHHH-CCCcEEEEecCC
Q 004944 47 KLRVLVIGAGLAGLAAARQLMR-LGFRVTVLEGRK 80 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak-~G~~V~VLEa~~ 80 (722)
.+|+||||||.+|+.+|..|++ .|++|+|||+..
T Consensus 5 ~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 5 EYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred cCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 4999999999999999999999 799999999975
No 260
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=97.15 E-value=0.00036 Score=81.70 Aligned_cols=35 Identities=37% Similarity=0.570 Sum_probs=32.5
Q ss_pred EEEECccHHHHHHHHHHHHCCCcEEEEecCCCcce
Q 004944 50 VLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (722)
Q Consensus 50 VvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GG 84 (722)
|+|||||+|||+||..+++.|.+|+|+||.+.+||
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~~ 35 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPRR 35 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCCC
Confidence 79999999999999999999999999999886653
No 261
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.14 E-value=0.00043 Score=72.28 Aligned_cols=33 Identities=33% Similarity=0.580 Sum_probs=30.5
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecC
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~ 79 (722)
++||+|||||+|||+||..|+++|+++.|+-..
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~g 34 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRG 34 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCC
Confidence 489999999999999999999999999888763
No 262
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.12 E-value=0.00045 Score=79.66 Aligned_cols=40 Identities=35% Similarity=0.532 Sum_probs=36.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCccee
Q 004944 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGR 85 (722)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr 85 (722)
.++||+|||||.|||.||..++++|.+|+|+||....+|.
T Consensus 5 ~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~ 44 (562)
T COG1053 5 HEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGH 44 (562)
T ss_pred ccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCc
Confidence 3599999999999999999999999999999998877753
No 263
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.023 Score=60.59 Aligned_cols=240 Identities=15% Similarity=0.103 Sum_probs=118.4
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeeeeeecCCC-------------CCCCcceEeeccceEEcCC
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKMEGG-------------AGNRISASADLGGSVLTGT 113 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~T~~~~g~-------------~gn~~~~~~D~Ga~~~~~~ 113 (722)
.+||+|+|-|+.=..-+..|+-+|.+|+.+|+++.-|+-..|.+...- .+......+|+=+-.+...
T Consensus 6 ~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~asltl~ql~~~~~~~~~~p~k~~~drd~~iDL~PK~l~A~ 85 (434)
T COG5044 6 LYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLTLTQLEKYFDECEKRPSKGGGDRDLNIDLIPKFLFAN 85 (434)
T ss_pred cccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccccceeHHHHHHHhhhhhccccccccccccchhhchhhhccc
Confidence 499999999999999999999999999999999999998777654310 0001122233333322221
Q ss_pred CCcHHHHHHHHhCCCeeee--cCCcceEecCCcccChhh-----------hHHHHHHHHHHHHHHHHHHHHhhc---ccc
Q 004944 114 LGNPLGILAKQLGSLLHKV--RDKCPLYRLDGNSVDPEI-----------DMKVEADFNRLLDKASRLRQLMGE---VAM 177 (722)
Q Consensus 114 ~~~~l~~L~~eLGl~~~~~--~~~~~~~~~~G~~~~~~~-----------~~~~~~~~~~ll~~~~~~~~~~~~---~~~ 177 (722)
..+..++.+.|+..... .-...+++.+|+....+. .....+...+++.++..+.+.... ...
T Consensus 86 --s~l~~iLi~t~v~~YLefk~i~~~~~~~~~k~~kVP~ne~ei~~s~~lsL~eKr~vmrFl~~V~n~~~~~~~~~~~~e 163 (434)
T COG5044 86 --SELLKILIETGVTEYLEFKQISGSFLYRPGKIYKVPYNEAEIFTSPLLSLFEKRRVMRFLKWVSNYAEQKSTLQELYE 163 (434)
T ss_pred --chHHHHHHHhChHhheeeeeccccEEecCCcEEECCccHHhhhcCCCcchhhHHHHHHHHHHHHhHHhhhhhchhhhh
Confidence 22334555666542211 111223333334432221 112223334444444444331111 111
Q ss_pred CCCHHHHHHHHHHHhccCCCHHHHHHHH-HHHHhhhhccchhhHHHHHHhhccCCCCCCCCCeeeeCCChHHHHHHHHH-
Q 004944 178 DVSLGSALETFWRVYWDSGNAEAMNLFN-WHLANLEYANASLLSKLSLAFWDQDDPYDMGGDHCFLPGGNGRLVQALVE- 255 (722)
Q Consensus 178 ~~s~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~~~~~~gG~~~L~~aLa~- 255 (722)
+..+ .+.....++......+.-... .....+.......+. -.+.|......+. .....++.-|.+.|.+.+++
T Consensus 164 ~k~~---~~~~~ekf~L~~~~~e~i~~~i~l~ldl~~p~re~~e-rIl~Y~~Sf~~yg-~~pyLyp~YGl~El~QGFaRs 238 (434)
T COG5044 164 SKDT---MEFLFEKFGLSGATEEFIGHGIALSLDLDIPAREALE-RILRYMRSFGDYG-KSPYLYPRYGLGELSQGFARS 238 (434)
T ss_pred cccH---HHHHHHHHccCcchhhhhhhhhhhhccccCCchHHHH-HHHHHHHhhcccC-CCcceeeccCchhhhHHHHHh
Confidence 1112 222222222211111100000 000001100111111 1112222222221 12467788889999999887
Q ss_pred ----cCCcccCceEEEEEecCCcEEEEECCEEEEeCEEEEcC
Q 004944 256 ----NVPILYEKTVHTIRYGSDGVQVLAGSQVFEGDMVLCTV 293 (722)
Q Consensus 256 ----~l~I~ln~~V~~I~~~~~~v~V~~~G~~~~AD~VI~Av 293 (722)
|....+|+++.+|...++..+|..++.+..|..||...
T Consensus 239 sav~GgtymLn~~i~ein~tk~v~~v~~~~~~~ka~KiI~~~ 280 (434)
T COG5044 239 SAVYGGTYMLNQAIDEINETKDVETVDKGSLTQKAGKIISSP 280 (434)
T ss_pred hhccCceeecCcchhhhccccceeeeecCcceeecCcccCCc
Confidence 55799999999998876621233367788888887643
No 264
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=97.09 E-value=0.00048 Score=80.48 Aligned_cols=33 Identities=24% Similarity=0.577 Sum_probs=30.8
Q ss_pred cEEEECccHHHHHHHHHHH----HCCCcEEEEecCCC
Q 004944 49 RVLVIGAGLAGLAAARQLM----RLGFRVTVLEGRKR 81 (722)
Q Consensus 49 dVvIVGAGiAGLsAA~~La----k~G~~V~VLEa~~r 81 (722)
||+|||||+|||+||..++ ++|.+|+|+||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence 7999999999999999998 78999999999765
No 265
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=96.97 E-value=0.0099 Score=65.09 Aligned_cols=62 Identities=32% Similarity=0.458 Sum_probs=46.6
Q ss_pred CCCeeeeCCChHHHHHHHHH--cCCcccCceEEEE-EecCCc---EEEEE----CCEEEEeCEEEEcCChhhh
Q 004944 236 GGDHCFLPGGNGRLVQALVE--NVPILYEKTVHTI-RYGSDG---VQVLA----GSQVFEGDMVLCTVPLGVL 298 (722)
Q Consensus 236 ~g~~~~~~gG~~~L~~aLa~--~l~I~ln~~V~~I-~~~~~~---v~V~~----~G~~~~AD~VI~AvP~~~l 298 (722)
.++.+.+.||+.++++.|.+ +..+ ++++|++| ...+++ ++|++ +...-.+|.||+|+|+..-
T Consensus 117 ~~gl~sV~GGN~qI~~~ll~~S~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~~~ 188 (368)
T PF07156_consen 117 TGGLWSVEGGNWQIFEGLLEASGANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIATPLQQS 188 (368)
T ss_pred cCCceEecCCHHHHHHHHHHHccCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECCCcccc
Confidence 35678999999999999976 5678 99999999 444444 45655 2223457999999999643
No 266
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.0047 Score=66.40 Aligned_cols=45 Identities=22% Similarity=0.327 Sum_probs=41.3
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeeeeeec
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKM 91 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~T~~~ 91 (722)
.+||+|+|-|+.=..-+..|+..|.+|+.+|+++.-||-..|.+.
T Consensus 4 eyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sasltl 48 (440)
T KOG1439|consen 4 EYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESASLTL 48 (440)
T ss_pred ceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCccccceeH
Confidence 399999999999999999999999999999999999998888653
No 267
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=96.92 E-value=0.0014 Score=67.98 Aligned_cols=41 Identities=37% Similarity=0.590 Sum_probs=36.7
Q ss_pred CCCCCCcEEEECccHHHHHHHHHHHHC--CCcEEEEecCCCcc
Q 004944 43 PSSNKLRVLVIGAGLAGLAAARQLMRL--GFRVTVLEGRKRAG 83 (722)
Q Consensus 43 ~~~~~~dVvIVGAGiAGLsAA~~Lak~--G~~V~VLEa~~r~G 83 (722)
...+++|+|||||||.||+.|++|.-. +.+|.|||+...++
T Consensus 44 ~s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la 86 (453)
T KOG2665|consen 44 ISKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLA 86 (453)
T ss_pred cccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhc
Confidence 345679999999999999999999887 89999999998876
No 268
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=96.89 E-value=0.00089 Score=70.07 Aligned_cols=35 Identities=31% Similarity=0.431 Sum_probs=32.0
Q ss_pred CCcEEEECccHHHHHHHHHHHHC----CCcEEEEecCCC
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRL----GFRVTVLEGRKR 81 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~----G~~V~VLEa~~r 81 (722)
++||+|||||.+|++.||.|.+. |++|+|+|+.+.
T Consensus 86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddt 124 (509)
T KOG2853|consen 86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDT 124 (509)
T ss_pred ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCc
Confidence 68999999999999999999885 799999999774
No 269
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=96.87 E-value=0.0011 Score=76.27 Aligned_cols=39 Identities=33% Similarity=0.453 Sum_probs=34.5
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceee
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~ 86 (722)
+||+|||||++|+.||+.+++.|.+|+|+|+....+|.+
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~ 39 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKC 39 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCC
Confidence 689999999999999999999999999999975544444
No 270
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=96.84 E-value=0.001 Score=81.56 Aligned_cols=35 Identities=40% Similarity=0.431 Sum_probs=32.9
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCC
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r 81 (722)
++||+|||||+|||+||..+++.|.+|+|+||...
T Consensus 13 ~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 13 DCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred ecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 48999999999999999999999999999999764
No 271
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=96.75 E-value=0.0016 Score=73.61 Aligned_cols=36 Identities=25% Similarity=0.436 Sum_probs=32.2
Q ss_pred CcEEEECccHHHHHHHHHHHHC--CCcEEEEecCCCcc
Q 004944 48 LRVLVIGAGLAGLAAARQLMRL--GFRVTVLEGRKRAG 83 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~--G~~V~VLEa~~r~G 83 (722)
++|||||||++|++||..|++. +.+|+|+|+++.++
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~ 39 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS 39 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc
Confidence 5899999999999999999987 57899999987654
No 272
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=96.74 E-value=0.0063 Score=64.61 Aligned_cols=41 Identities=41% Similarity=0.569 Sum_probs=36.6
Q ss_pred CCcEEEECccHHHHHHHHHHHHCC----CcEEEEecCCCcceeee
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLG----FRVTVLEGRKRAGGRVY 87 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G----~~V~VLEa~~r~GGr~~ 87 (722)
.+.+-|||+|+|||++|.+|.+.| .++-|||.-+..||..-
T Consensus 22 qKsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSlD 66 (587)
T COG4716 22 QKSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSLD 66 (587)
T ss_pred cceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCCCC
Confidence 478999999999999999999975 58999999999998654
No 273
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=96.74 E-value=0.0016 Score=73.79 Aligned_cols=38 Identities=18% Similarity=0.351 Sum_probs=32.6
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeee
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (722)
+|||+|||||.+|..||.. .+|.+|+|+|+ +.+||-|-
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~-~~~GGtC~ 39 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEK-GTFGGTCL 39 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCeee
Confidence 4999999999999998754 47999999998 67898764
No 274
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=96.72 E-value=0.0015 Score=73.66 Aligned_cols=36 Identities=31% Similarity=0.563 Sum_probs=32.1
Q ss_pred CcEEEECccHHHHHHHHHHHHCC--CcEEEEecCCCcc
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLG--FRVTVLEGRKRAG 83 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G--~~V~VLEa~~r~G 83 (722)
++|+|||||++||+||..|++.| .+|+|+|+++.++
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~ 38 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVS 38 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcce
Confidence 36999999999999999999975 5899999988764
No 275
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=96.68 E-value=0.0019 Score=71.56 Aligned_cols=33 Identities=33% Similarity=0.657 Sum_probs=31.3
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
+||+|||||++|+++|+.|++.|++|+|+|+..
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 589999999999999999999999999999864
No 276
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=96.68 E-value=0.0018 Score=69.04 Aligned_cols=42 Identities=36% Similarity=0.589 Sum_probs=39.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeee
Q 004944 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (722)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (722)
..+||+|||+|++|-.||...++.|++..++|++..+||-|-
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcL 79 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCL 79 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceee
Confidence 459999999999999999999999999999999999999764
No 277
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=96.67 E-value=0.00066 Score=69.66 Aligned_cols=39 Identities=26% Similarity=0.591 Sum_probs=35.3
Q ss_pred CCcEEEECccHHHHHHHHHHHHCC------CcEEEEecCCCccee
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLG------FRVTVLEGRKRAGGR 85 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G------~~V~VLEa~~r~GGr 85 (722)
..+|+||||||.|.++||+|++.+ ..|+|||.....||.
T Consensus 10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~ga 54 (380)
T KOG2852|consen 10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGA 54 (380)
T ss_pred ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccccc
Confidence 478999999999999999999997 689999998887763
No 278
>PRK07846 mycothione reductase; Reviewed
Probab=96.66 E-value=0.0016 Score=73.79 Aligned_cols=37 Identities=19% Similarity=0.354 Sum_probs=32.2
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeee
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVY 87 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~ 87 (722)
|||+|||||.+|.+||.. ..|.+|+|+|+ +.+||-|-
T Consensus 2 yD~vVIG~G~~g~~aa~~--~~G~~V~lie~-~~~GGtC~ 38 (451)
T PRK07846 2 YDLIIIGTGSGNSILDER--FADKRIAIVEK-GTFGGTCL 38 (451)
T ss_pred CCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCccc
Confidence 899999999999999876 46999999998 57888663
No 279
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=96.64 E-value=0.0025 Score=70.44 Aligned_cols=51 Identities=16% Similarity=0.322 Sum_probs=40.7
Q ss_pred HHHHHHHH----HcCCcccCceEEEEEecCCcEEEEE-CCEEEEeCEEEEcCChhh
Q 004944 247 GRLVQALV----ENVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPLGV 297 (722)
Q Consensus 247 ~~L~~aLa----~~l~I~ln~~V~~I~~~~~~v~V~~-~G~~~~AD~VI~AvP~~~ 297 (722)
..++.+|. +|++|+++++|++|+.+++++.|.+ +|..+.||.||+|+....
T Consensus 135 ~~~~~~l~~~~~~G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~ 190 (381)
T TIGR03197 135 PQLCRALLAHAGIRLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQA 190 (381)
T ss_pred HHHHHHHHhccCCCcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCccc
Confidence 44445543 3678999999999998888888888 666799999999998764
No 280
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=96.62 E-value=0.0015 Score=75.71 Aligned_cols=32 Identities=34% Similarity=0.342 Sum_probs=30.4
Q ss_pred cEEEECccHHHHHHHHHHHHCC-CcEEEEecCC
Q 004944 49 RVLVIGAGLAGLAAARQLMRLG-FRVTVLEGRK 80 (722)
Q Consensus 49 dVvIVGAGiAGLsAA~~Lak~G-~~V~VLEa~~ 80 (722)
|+||||||.+|+.+|.+|+++| ++|+|||+..
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~ 33 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGG 33 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCC
Confidence 7999999999999999999998 7999999975
No 281
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=96.62 E-value=0.0017 Score=75.02 Aligned_cols=35 Identities=31% Similarity=0.469 Sum_probs=32.6
Q ss_pred CCCCcEEEECccHHHHHHHHHHHHCCCcEEEEecC
Q 004944 45 SNKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (722)
Q Consensus 45 ~~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~ 79 (722)
+.++|+||||+|.+|-+.|+.|+..|++|+|||+.
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG 39 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAG 39 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCC
Confidence 34599999999999999999999999999999995
No 282
>PRK07846 mycothione reductase; Reviewed
Probab=96.57 E-value=0.015 Score=65.83 Aligned_cols=34 Identities=29% Similarity=0.491 Sum_probs=31.9
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r 81 (722)
.+|+|||||..|+-.|..|++.|.+|+|+|+.++
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ 200 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGR 200 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence 6799999999999999999999999999999764
No 283
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=96.53 E-value=0.0027 Score=70.61 Aligned_cols=36 Identities=22% Similarity=0.464 Sum_probs=32.4
Q ss_pred CcEEEECccHHHHHHHHHHHHCCC--cEEEEecCCCcc
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGF--RVTVLEGRKRAG 83 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~--~V~VLEa~~r~G 83 (722)
.+|+|||||+||++||..|++.|+ +|+|+++.+...
T Consensus 4 ~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~ 41 (396)
T PRK09754 4 KTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLP 41 (396)
T ss_pred CcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCC
Confidence 689999999999999999999987 799999987553
No 284
>PLN02785 Protein HOTHEAD
Probab=96.50 E-value=0.0033 Score=73.37 Aligned_cols=35 Identities=31% Similarity=0.471 Sum_probs=31.8
Q ss_pred CCCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 45 SNKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 45 ~~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
...+|+||||||.+|+..|..|++ +.+|+|||+..
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~ 87 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGG 87 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCC
Confidence 345999999999999999999999 68999999965
No 285
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=96.49 E-value=0.0029 Score=71.04 Aligned_cols=38 Identities=32% Similarity=0.455 Sum_probs=33.4
Q ss_pred CCCCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCC
Q 004944 44 SSNKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (722)
Q Consensus 44 ~~~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r 81 (722)
...+++|||||||.+|+.+|..|.+.+++|+|+|++++
T Consensus 7 ~~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~ 44 (424)
T PTZ00318 7 RLKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNH 44 (424)
T ss_pred CCCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCC
Confidence 34458999999999999999999877889999999874
No 286
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=96.44 E-value=0.0049 Score=67.10 Aligned_cols=35 Identities=29% Similarity=0.334 Sum_probs=27.6
Q ss_pred CCcEEEECccHHHHHHHHHHHHCC-CcEEEEecCCC
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLG-FRVTVLEGRKR 81 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G-~~V~VLEa~~r 81 (722)
.+|+|+||.|+++|+-|..|.+.+ .+++.||+++.
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~ 37 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPS 37 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCC
Confidence 389999999999999999999987 89999999774
No 287
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=96.44 E-value=0.022 Score=64.59 Aligned_cols=34 Identities=24% Similarity=0.438 Sum_probs=31.7
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r 81 (722)
.+|+|||||..|+-.|..|++.|.+|+|+|..++
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ 203 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTK 203 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCc
Confidence 6799999999999999999999999999998654
No 288
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=96.36 E-value=0.0036 Score=69.35 Aligned_cols=39 Identities=41% Similarity=0.654 Sum_probs=36.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceee
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~ 86 (722)
.+|+|||+|..||.+|..|++.|++|+|+|+.+++||+.
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~ 175 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQL 175 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhh
Confidence 789999999999999999999999999999999998643
No 289
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.83 E-value=0.0093 Score=66.05 Aligned_cols=38 Identities=26% Similarity=0.498 Sum_probs=33.3
Q ss_pred CCcEEEECccHHHHHHHHHHHHCC---CcEEEEecCCCcce
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLG---FRVTVLEGRKRAGG 84 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G---~~V~VLEa~~r~GG 84 (722)
+++|+|||+|.+|+++|.+|.+.- ..|.|+|.....|+
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~ 41 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQ 41 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCC
Confidence 378999999999999999999962 23999999999885
No 290
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=95.75 E-value=0.0085 Score=62.80 Aligned_cols=35 Identities=43% Similarity=0.498 Sum_probs=32.1
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCc
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~ 82 (722)
..|.|||||+||--|||+|+++|++|.++|-++.-
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k 38 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVK 38 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCcEEEEEccccc
Confidence 56999999999999999999999999999987643
No 291
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=95.69 E-value=0.0079 Score=66.60 Aligned_cols=32 Identities=56% Similarity=0.721 Sum_probs=29.9
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEecCCC
Q 004944 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (722)
Q Consensus 49 dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r 81 (722)
||+|||+|+|||+||..|.+. ++|+|+-|...
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~ 40 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPL 40 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCC
Confidence 899999999999999999988 99999999654
No 292
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=95.60 E-value=0.015 Score=64.20 Aligned_cols=33 Identities=15% Similarity=0.404 Sum_probs=29.7
Q ss_pred CcEEEECccHHHHHHHHHHHHCC--CcEEEEecCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLG--FRVTVLEGRK 80 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G--~~V~VLEa~~ 80 (722)
++|||||||+||+++|..|.+.+ .+|+|+++++
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~ 37 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADS 37 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCC
Confidence 68999999999999999998864 5799999976
No 293
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=95.27 E-value=0.49 Score=50.83 Aligned_cols=43 Identities=19% Similarity=0.170 Sum_probs=35.4
Q ss_pred cCCcccCceEEEEEecCCcEE-EEECCEEEEeCEEEEcCChhhh
Q 004944 256 NVPILYEKTVHTIRYGSDGVQ-VLAGSQVFEGDMVLCTVPLGVL 298 (722)
Q Consensus 256 ~l~I~ln~~V~~I~~~~~~v~-V~~~G~~~~AD~VI~AvP~~~l 298 (722)
|++|+.+++|++|..++++|. |.+++.+++||.||+|+....-
T Consensus 151 g~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~a~~vV~a~G~~~~ 194 (337)
T TIGR02352 151 GVEIIEHTEVQHIEIRGEKVTAIVTPSGDVQADQVVLAAGAWAG 194 (337)
T ss_pred CCEEEccceEEEEEeeCCEEEEEEcCCCEEECCEEEEcCChhhh
Confidence 678999999999998877765 5554458999999999997654
No 294
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=95.24 E-value=0.022 Score=62.79 Aligned_cols=35 Identities=34% Similarity=0.665 Sum_probs=32.0
Q ss_pred CCcEEEECccHHHHHHHHHHHHCC--CcEEEEecCCC
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLG--FRVTVLEGRKR 81 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G--~~V~VLEa~~r 81 (722)
+++|||||||.+||.+|..|.++- .+|+++|+++.
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~ 39 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDY 39 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCc
Confidence 478999999999999999999974 88999999875
No 295
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=95.23 E-value=0.017 Score=63.45 Aligned_cols=33 Identities=24% Similarity=0.399 Sum_probs=29.0
Q ss_pred cEEEECccHHHHHHHHHHHHC---CCcEEEEecCCC
Q 004944 49 RVLVIGAGLAGLAAARQLMRL---GFRVTVLEGRKR 81 (722)
Q Consensus 49 dVvIVGAGiAGLsAA~~Lak~---G~~V~VLEa~~r 81 (722)
+|||||||+||+.+|..|.++ +++|+|+|+++.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~ 36 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSST 36 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCC
Confidence 499999999999999999754 689999998775
No 296
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.01 E-value=0.021 Score=60.04 Aligned_cols=33 Identities=36% Similarity=0.581 Sum_probs=31.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEec
Q 004944 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEG 78 (722)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa 78 (722)
..||.||||||-+||+||.+.+..|.+|.+||.
T Consensus 18 ydyDLIviGgGSgGLacaKeAa~~G~kV~~lDf 50 (503)
T KOG4716|consen 18 YDYDLIVIGGGSGGLACAKEAADLGAKVACLDF 50 (503)
T ss_pred CCccEEEEcCCcchhhHHHHHHhcCCcEEEEee
Confidence 359999999999999999999999999999997
No 297
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.01 E-value=0.033 Score=58.91 Aligned_cols=44 Identities=32% Similarity=0.436 Sum_probs=40.3
Q ss_pred CCCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeeee
Q 004944 45 SNKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYT 88 (722)
Q Consensus 45 ~~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~T 88 (722)
.+.+|..|||||-.|+++|++.++.|.+|.|.|..-++||-|-.
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn 61 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVN 61 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEe
Confidence 34699999999999999999999999999999998899997754
No 298
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=95.00 E-value=0.018 Score=64.55 Aligned_cols=43 Identities=30% Similarity=0.413 Sum_probs=34.5
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeeeee
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTK 89 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~T~ 89 (722)
.+||+|||||.||+-||+..++.|++++++=-+-.-=|.+...
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCN 46 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCN 46 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccc
Confidence 3999999999999999999999999998887653333344443
No 299
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=94.86 E-value=0.031 Score=62.17 Aligned_cols=36 Identities=31% Similarity=0.362 Sum_probs=33.5
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcc
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAG 83 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~G 83 (722)
.+|+|||||..|+-+|..|++.|.+|+|+|+.+++.
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l 180 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVM 180 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcch
Confidence 579999999999999999999999999999988664
No 300
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.79 E-value=0.034 Score=63.53 Aligned_cols=34 Identities=50% Similarity=0.784 Sum_probs=31.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r 81 (722)
.+|+|||+|.+|+++|..|++.|++|+++|+++.
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~ 50 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGDD 50 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 6799999999999999999999999999998753
No 301
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=94.63 E-value=0.035 Score=53.34 Aligned_cols=32 Identities=38% Similarity=0.425 Sum_probs=30.2
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 49 dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
+|+|||||-.|.+.|..|+++|++|+++.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 58999999999999999999999999999864
No 302
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.48 E-value=0.038 Score=62.77 Aligned_cols=34 Identities=38% Similarity=0.512 Sum_probs=31.7
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEecCCCc
Q 004944 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (722)
Q Consensus 49 dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~ 82 (722)
+|.|||+|.+|++||+.|.++|++|+++|++..+
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 5999999999999999999999999999997754
No 303
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=94.36 E-value=0.043 Score=59.48 Aligned_cols=35 Identities=31% Similarity=0.442 Sum_probs=30.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHHC----CCcEEEEecCC
Q 004944 46 NKLRVLVIGAGLAGLAAARQLMRL----GFRVTVLEGRK 80 (722)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~----G~~V~VLEa~~ 80 (722)
+.+||+|||||+.|++-|..|... .++|++||..+
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~ 73 (481)
T KOG3855|consen 35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGD 73 (481)
T ss_pred ccCCEEEECCchHHHHHHHHhccCCccchheeeEEeccc
Confidence 359999999999999999999875 36899999983
No 304
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=94.29 E-value=0.049 Score=66.33 Aligned_cols=36 Identities=28% Similarity=0.512 Sum_probs=32.3
Q ss_pred CcEEEECccHHHHHHHHHHHHC----CCcEEEEecCCCcc
Q 004944 48 LRVLVIGAGLAGLAAARQLMRL----GFRVTVLEGRKRAG 83 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~----G~~V~VLEa~~r~G 83 (722)
.+|||||+|++|+.+|..|.+. +++|+|++++++++
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~ 43 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA 43 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc
Confidence 5899999999999999999864 47899999999875
No 305
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=94.26 E-value=0.1 Score=52.06 Aligned_cols=43 Identities=30% Similarity=0.423 Sum_probs=36.7
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEec----CCCcceeeeeee
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEG----RKRAGGRVYTKK 90 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa----~~r~GGr~~T~~ 90 (722)
-+|+|||+|+++-+||.+++++-.+.+|||. ..-+||.+.|.+
T Consensus 9 e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT 55 (322)
T KOG0404|consen 9 ENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTT 55 (322)
T ss_pred eeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeee
Confidence 5799999999999999999999999999995 344588776644
No 306
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=94.23 E-value=0.057 Score=60.92 Aligned_cols=35 Identities=37% Similarity=0.481 Sum_probs=32.8
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCc
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~ 82 (722)
.+|+|||||.+|+.+|..|++.|.+|+|+|+.+++
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 192 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTI 192 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence 57999999999999999999999999999998765
No 307
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.08 E-value=0.031 Score=59.08 Aligned_cols=40 Identities=43% Similarity=0.620 Sum_probs=32.2
Q ss_pred CCCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceee
Q 004944 45 SNKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRV 86 (722)
Q Consensus 45 ~~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~ 86 (722)
+..|||.|||||+||-+||.|.+++|.+.-|+ ..|+||.+
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~--aerfGGQv 248 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTGLV--AERFGGQV 248 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhhcchhhhh--hhhhCCee
Confidence 44599999999999999999999999985543 24667643
No 308
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=94.08 E-value=0.063 Score=52.88 Aligned_cols=32 Identities=38% Similarity=0.581 Sum_probs=28.1
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 49 dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
+|+|||||..|..-|..++.+|++|+++|.++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 58999999999999999999999999999954
No 309
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=94.00 E-value=0.068 Score=59.00 Aligned_cols=35 Identities=40% Similarity=0.563 Sum_probs=32.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCc
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~ 82 (722)
.+|+|||||.+|+-+|..|++.|.+|+|+|+.+++
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~ 176 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASL 176 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcc
Confidence 67999999999999999999999999999997754
No 310
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=93.98 E-value=0.053 Score=65.76 Aligned_cols=47 Identities=17% Similarity=0.262 Sum_probs=35.6
Q ss_pred HHHHHH-HcCCcccCceEEEEEecCCcEEEEE-CCEEEEeCEEEEcCCh
Q 004944 249 LVQALV-ENVPILYEKTVHTIRYGSDGVQVLA-GSQVFEGDMVLCTVPL 295 (722)
Q Consensus 249 L~~aLa-~~l~I~ln~~V~~I~~~~~~v~V~~-~G~~~~AD~VI~AvP~ 295 (722)
+.+.|. .|++|++++.|++|..++....|++ +|+++.+|.||++++.
T Consensus 188 l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~ 236 (785)
T TIGR02374 188 LQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGI 236 (785)
T ss_pred HHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCC
Confidence 344443 3789999999999976544445666 8889999999999864
No 311
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=93.91 E-value=0.067 Score=61.00 Aligned_cols=35 Identities=34% Similarity=0.586 Sum_probs=32.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCc
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~ 82 (722)
.+|+|||||.+|+-+|..|++.|.+|+|+|+.+++
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~i 215 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRI 215 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCcc
Confidence 68999999999999999999999999999997754
No 312
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=93.72 E-value=0.078 Score=60.17 Aligned_cols=35 Identities=34% Similarity=0.532 Sum_probs=32.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCc
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~ 82 (722)
.+|+|||||.+|+-+|..|++.|.+|+|+|+.+++
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 205 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRI 205 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCC
Confidence 68999999999999999999999999999998754
No 313
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=93.59 E-value=0.051 Score=56.47 Aligned_cols=33 Identities=42% Similarity=0.627 Sum_probs=27.8
Q ss_pred CCcEEEECccHHHHHHHHHHHHCC-------CcEEEEecC
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLG-------FRVTVLEGR 79 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G-------~~V~VLEa~ 79 (722)
.++|+|||||+.||++|..|.+.+ .+|+|++-.
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Dr 42 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDR 42 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCC
Confidence 488999999999999999988854 468888753
No 314
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=93.47 E-value=0.091 Score=59.74 Aligned_cols=35 Identities=37% Similarity=0.565 Sum_probs=32.5
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCc
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~ 82 (722)
.+|+|||||.+|+-+|..|++.|.+|+|+|+.+++
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 201 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRL 201 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcC
Confidence 67999999999999999999999999999997654
No 315
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=93.43 E-value=0.073 Score=52.69 Aligned_cols=33 Identities=30% Similarity=0.488 Sum_probs=26.9
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
++|.|||.|..||..|..|+++|++|+.+|.+.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 579999999999999999999999999999865
No 316
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=93.32 E-value=0.025 Score=63.02 Aligned_cols=39 Identities=28% Similarity=0.515 Sum_probs=35.7
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcce
Q 004944 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (722)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GG 84 (722)
..+||+|||||.+|-.||.-.+-+|.+|.++|+.|..-|
T Consensus 66 ~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SG 104 (680)
T KOG0042|consen 66 HEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASG 104 (680)
T ss_pred CcccEEEECCCccCcceeehhhcccceeEEEecccccCC
Confidence 359999999999999999999999999999999887655
No 317
>PRK06370 mercuric reductase; Validated
Probab=93.12 E-value=0.11 Score=59.00 Aligned_cols=36 Identities=36% Similarity=0.519 Sum_probs=33.3
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcc
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAG 83 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~G 83 (722)
.+|+|||||..|+-+|..|++.|.+|+|+|+.+++.
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l 207 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLL 207 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCC
Confidence 679999999999999999999999999999987653
No 318
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=93.05 E-value=0.12 Score=58.92 Aligned_cols=35 Identities=43% Similarity=0.565 Sum_probs=32.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCc
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~ 82 (722)
.+|+|||||..|+-.|..|++.|.+|+|+|+.+++
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~i 209 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRI 209 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 67999999999999999999999999999997754
No 319
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=93.04 E-value=0.12 Score=58.78 Aligned_cols=35 Identities=31% Similarity=0.495 Sum_probs=32.4
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCc
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~ 82 (722)
.+|+|||||.+|+-+|..|.+.|.+|+|+|+.+++
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~l 205 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQL 205 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 57999999999999999999999999999997754
No 320
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=93.04 E-value=0.12 Score=58.60 Aligned_cols=35 Identities=29% Similarity=0.438 Sum_probs=32.7
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCc
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~ 82 (722)
.+|+|||||..|+-.|..|++.|.+|+|+|+.+++
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~i 201 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERV 201 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 67999999999999999999999999999998764
No 321
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=93.03 E-value=0.12 Score=58.96 Aligned_cols=35 Identities=37% Similarity=0.552 Sum_probs=32.7
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCc
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~ 82 (722)
.+|+|||||..|+-.|..|++.|.+|+|+|+.+++
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~i 209 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQV 209 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence 57999999999999999999999999999998764
No 322
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=93.00 E-value=0.1 Score=55.91 Aligned_cols=33 Identities=36% Similarity=0.440 Sum_probs=31.0
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
++|.|||+|..|.+.|..|+++|++|++++++.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 479999999999999999999999999999875
No 323
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=92.95 E-value=0.12 Score=58.67 Aligned_cols=35 Identities=34% Similarity=0.510 Sum_probs=32.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCc
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~ 82 (722)
.+|+|||||.+|+-+|..|++.|.+|+|+|+.+++
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 207 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRI 207 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCc
Confidence 57999999999999999999999999999997764
No 324
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=92.94 E-value=0.1 Score=59.88 Aligned_cols=38 Identities=26% Similarity=0.398 Sum_probs=33.3
Q ss_pred CCCCcEEEECccHHHHHHHHHHHHC-CCcEEEEecCCCc
Q 004944 45 SNKLRVLVIGAGLAGLAAARQLMRL-GFRVTVLEGRKRA 82 (722)
Q Consensus 45 ~~~~dVvIVGAGiAGLsAA~~Lak~-G~~V~VLEa~~r~ 82 (722)
...||.||||||-||..-|..|++. -.+|+|||+...+
T Consensus 55 ~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 55 DSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred ccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 3469999999999999999999997 5799999996544
No 325
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=92.94 E-value=0.13 Score=57.90 Aligned_cols=35 Identities=34% Similarity=0.550 Sum_probs=33.1
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCc
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~ 82 (722)
.+++|||||..|+=-|..+++.|.+|||+|+.+++
T Consensus 174 ~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~i 208 (454)
T COG1249 174 KSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRI 208 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 56999999999999999999999999999998865
No 326
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=92.87 E-value=0.14 Score=57.57 Aligned_cols=35 Identities=31% Similarity=0.505 Sum_probs=32.2
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCc
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~ 82 (722)
.+|+|||||.+|+-+|..|++.|.+|+++++.+++
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 172 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERI 172 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCccc
Confidence 68999999999999999999999999999987643
No 327
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=92.75 E-value=0.16 Score=49.45 Aligned_cols=33 Identities=39% Similarity=0.480 Sum_probs=29.3
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
.+|+|+|+|.+|+.||..|...|.+|+++|...
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred eEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 789999999999999999999999999999853
No 328
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=92.75 E-value=0.14 Score=58.04 Aligned_cols=36 Identities=42% Similarity=0.604 Sum_probs=33.1
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcc
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAG 83 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~G 83 (722)
.+|+|||||..|+-.|..|++.|.+|+|+|+.+++.
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l 205 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRIL 205 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Confidence 679999999999999999999999999999987643
No 329
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=92.71 E-value=0.16 Score=48.12 Aligned_cols=31 Identities=35% Similarity=0.537 Sum_probs=29.1
Q ss_pred EEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 50 VLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 50 VvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
|+|||+|-.|+..|++|+++|++|+++-+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 7899999999999999999999999998854
No 330
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=92.67 E-value=0.13 Score=58.09 Aligned_cols=36 Identities=25% Similarity=0.436 Sum_probs=33.2
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcc
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAG 83 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~G 83 (722)
.+|+|||||..|+-.|..|++.|.+|+|+|+.+++.
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~ 184 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKIN 184 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc
Confidence 579999999999999999999999999999987654
No 331
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=92.67 E-value=0.14 Score=58.40 Aligned_cols=35 Identities=34% Similarity=0.464 Sum_probs=32.1
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCc
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~ 82 (722)
.+|+|||||..|+-+|..|++.|.+|+|+|+.+++
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~ 207 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRA 207 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 57999999999999999999999999999987654
No 332
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.61 E-value=0.14 Score=57.86 Aligned_cols=34 Identities=41% Similarity=0.702 Sum_probs=31.7
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
.++|+|||+|.+|+++|..|++.|++|+++|..+
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3789999999999999999999999999999864
No 333
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=92.60 E-value=0.13 Score=51.01 Aligned_cols=34 Identities=29% Similarity=0.414 Sum_probs=28.9
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
..+|+|||+|.|+.-+|+.|++.|.+|+++=+++
T Consensus 167 ~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 167 GKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp TSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred CCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 4789999999999999999999999999998765
No 334
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=92.52 E-value=0.15 Score=57.91 Aligned_cols=35 Identities=31% Similarity=0.548 Sum_probs=32.7
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCc
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~ 82 (722)
.+|+|||||..|+-.|..|++.|.+|+|+|+.+++
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 210 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRL 210 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 67999999999999999999999999999998754
No 335
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=92.40 E-value=0.15 Score=53.53 Aligned_cols=68 Identities=29% Similarity=0.399 Sum_probs=48.7
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecC--------CCcceeeeeeecCCCC--CCCcceEeeccceEEcCCC
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR--------KRAGGRVYTKKMEGGA--GNRISASADLGGSVLTGTL 114 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~--------~r~GGr~~T~~~~g~~--gn~~~~~~D~Ga~~~~~~~ 114 (722)
.-+|+|||||..|.-||.-..-.|.+|+|+|.+ +..|||+.+....-.. .+-...-+=.|+-.+++..
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgak 245 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAK 245 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCC
Confidence 368999999999999999999999999999987 6788998876654210 0001123345666666543
No 336
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=92.39 E-value=0.16 Score=58.00 Aligned_cols=35 Identities=40% Similarity=0.532 Sum_probs=32.4
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCc
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~ 82 (722)
.+|+|||||..|+-+|..|++.|.+|+|+|+.+++
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 218 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAF 218 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCcc
Confidence 58999999999999999999999999999997654
No 337
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=92.21 E-value=0.13 Score=53.90 Aligned_cols=60 Identities=25% Similarity=0.381 Sum_probs=41.6
Q ss_pred HHHhhhccccccccccccCCCCCCCCCCcEEEECccHHHHHHHHHHHHC-CC-cEEEEecCC
Q 004944 21 LVSNGYINFGVAPEIKEKIPVEPSSNKLRVLVIGAGLAGLAAARQLMRL-GF-RVTVLEGRK 80 (722)
Q Consensus 21 ~~~~g~~~~g~~~~~~~~~p~~~~~~~~dVvIVGAGiAGLsAA~~Lak~-G~-~V~VLEa~~ 80 (722)
|..+-.+.+...+-..+........++++|.|||||-+|++.|..+.++ |. +|-|+|-.+
T Consensus 13 l~t~~~~~~~~~~~~~~t~~~~~~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e 74 (446)
T KOG3851|consen 13 LSTNSTIKSQTGPFQLATMLARFARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE 74 (446)
T ss_pred hhhccccccccccEeehhhhhhhcccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence 3334444444444444444444455679999999999999999999886 54 699999765
No 338
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.07 E-value=0.17 Score=53.70 Aligned_cols=33 Identities=36% Similarity=0.387 Sum_probs=30.7
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
.+|+|||+|..|.+.|..|+++|++|++++.++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 579999999999999999999999999999754
No 339
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=91.94 E-value=0.21 Score=56.36 Aligned_cols=35 Identities=31% Similarity=0.544 Sum_probs=32.0
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCc
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~ 82 (722)
.+|+|||||.+|+-+|..|.+.|.+|+++|+.+++
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 184 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRI 184 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCccc
Confidence 67999999999999999999999999999987643
No 340
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.85 E-value=0.18 Score=53.45 Aligned_cols=33 Identities=27% Similarity=0.513 Sum_probs=30.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
.+|+|||+|..|...|..|+++|++|++++.++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 469999999999999999999999999999864
No 341
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=91.82 E-value=0.18 Score=61.33 Aligned_cols=36 Identities=39% Similarity=0.503 Sum_probs=33.4
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcc
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAG 83 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~G 83 (722)
.+|+|||||..|+-+|..|++.|.+|+|+|..+++-
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll 176 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLM 176 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchh
Confidence 579999999999999999999999999999987763
No 342
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=91.74 E-value=0.16 Score=55.99 Aligned_cols=38 Identities=39% Similarity=0.543 Sum_probs=32.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecC-CCcc
Q 004944 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR-KRAG 83 (722)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~-~r~G 83 (722)
..+||||||||.||.-||...++.|-+.++|-.+ +.+|
T Consensus 27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig 65 (679)
T KOG2311|consen 27 STYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIG 65 (679)
T ss_pred CcccEEEECCCccchHHHHHHHhcCCceEEeeccccccc
Confidence 4599999999999999999999999987777654 4443
No 343
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.67 E-value=0.18 Score=53.47 Aligned_cols=33 Identities=39% Similarity=0.476 Sum_probs=31.0
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
.+|+|||+|..|..-|..|+++|++|+++|.++
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 38 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTE 38 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCH
Confidence 479999999999999999999999999999865
No 344
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.63 E-value=0.2 Score=53.89 Aligned_cols=33 Identities=18% Similarity=0.289 Sum_probs=31.0
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
.+|+|||+|..|..-|..++.+|++|+++|.++
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 569999999999999999999999999999865
No 345
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=91.52 E-value=0.22 Score=57.48 Aligned_cols=34 Identities=41% Similarity=0.422 Sum_probs=31.1
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r 81 (722)
.+|+|||||..|+-+|..|++.|.+|+|+|..++
T Consensus 353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~ 386 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADE 386 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCc
Confidence 5899999999999999999999999999997553
No 346
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=91.44 E-value=0.24 Score=56.45 Aligned_cols=36 Identities=31% Similarity=0.553 Sum_probs=32.9
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcc
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAG 83 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~G 83 (722)
.+|+|||+|..|+-.|..|++.|.+|+|+|+.+++.
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l 213 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVL 213 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCC
Confidence 579999999999999999999999999999977653
No 347
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=91.35 E-value=0.3 Score=47.55 Aligned_cols=33 Identities=27% Similarity=0.331 Sum_probs=30.0
Q ss_pred CCcEEEECccH-HHHHHHHHHHHCCCcEEEEecC
Q 004944 47 KLRVLVIGAGL-AGLAAARQLMRLGFRVTVLEGR 79 (722)
Q Consensus 47 ~~dVvIVGAGi-AGLsAA~~Lak~G~~V~VLEa~ 79 (722)
.++|+|||+|- .|..+|.+|.+.|.+|+|..++
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 48899999995 7999999999999999999975
No 348
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.04 E-value=0.3 Score=51.96 Aligned_cols=33 Identities=30% Similarity=0.311 Sum_probs=30.7
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
.+|+|||+|..|...|..|+++|++|++++.+.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 579999999999999999999999999999853
No 349
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=91.02 E-value=0.24 Score=60.37 Aligned_cols=36 Identities=39% Similarity=0.427 Sum_probs=33.3
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcc
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAG 83 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~G 83 (722)
.+++|||||+.||-+|..|++.|.+|+|+|..+++-
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll 181 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLM 181 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccch
Confidence 579999999999999999999999999999988753
No 350
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=91.02 E-value=0.32 Score=48.98 Aligned_cols=33 Identities=33% Similarity=0.499 Sum_probs=30.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
.+|+|||||-.|+..|..|.+.|.+|+|+....
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 689999999999999999999999999997654
No 351
>PTZ00058 glutathione reductase; Provisional
Probab=90.97 E-value=0.28 Score=57.12 Aligned_cols=36 Identities=19% Similarity=0.310 Sum_probs=32.8
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCc
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~ 82 (722)
..+|+|||||..|+-.|..|++.|.+|+|+|+.+++
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~i 272 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRL 272 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecccc
Confidence 367999999999999999999999999999997653
No 352
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=90.95 E-value=0.27 Score=58.14 Aligned_cols=36 Identities=22% Similarity=0.229 Sum_probs=33.1
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcc
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAG 83 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~G 83 (722)
.+|+|||||..|+-.|..|++.|.+|+|+|+.+++.
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll 348 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLL 348 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccc
Confidence 579999999999999999999999999999988653
No 353
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=90.89 E-value=0.28 Score=50.08 Aligned_cols=33 Identities=30% Similarity=0.647 Sum_probs=31.1
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
++++|||+|--|.+.|..|.+.|++|+++|..+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence 479999999999999999999999999999965
No 354
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=90.88 E-value=0.29 Score=55.39 Aligned_cols=35 Identities=23% Similarity=0.343 Sum_probs=31.8
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCc
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~ 82 (722)
.+|+|||||.+|+-.|..|++.|.+|+|+|+.+++
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~ 201 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELI 201 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCC
Confidence 57999999999999999999999999999986643
No 355
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=90.85 E-value=0.34 Score=52.13 Aligned_cols=33 Identities=33% Similarity=0.409 Sum_probs=30.7
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
++|+|||+|.-|.+-|..|+++|++|+++.++.
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 789999999999999999999999999998753
No 356
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=90.81 E-value=0.32 Score=52.15 Aligned_cols=33 Identities=27% Similarity=0.365 Sum_probs=30.9
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecC
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~ 79 (722)
.++|+|||+|--|...|++|+++|.+|+++.+.
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence 378999999999999999999999999999985
No 357
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=90.69 E-value=0.16 Score=52.07 Aligned_cols=34 Identities=26% Similarity=0.563 Sum_probs=28.2
Q ss_pred cEEEECccHHHHHHHHHHHHC--CCcEEEEecCCCc
Q 004944 49 RVLVIGAGLAGLAAARQLMRL--GFRVTVLEGRKRA 82 (722)
Q Consensus 49 dVvIVGAGiAGLsAA~~Lak~--G~~V~VLEa~~r~ 82 (722)
+.+||||||||.+||-.|+.. ..+|+++-+++.+
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~v 36 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFV 36 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHH
Confidence 368999999999999999986 3578888887643
No 358
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=90.62 E-value=0.47 Score=44.33 Aligned_cols=33 Identities=45% Similarity=0.568 Sum_probs=30.4
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCc-EEEEecC
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFR-VTVLEGR 79 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~-V~VLEa~ 79 (722)
..+|+|||||=+|-+++++|.+.|.+ |+|+-++
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 37899999999999999999999987 9999875
No 359
>PRK10262 thioredoxin reductase; Provisional
Probab=90.48 E-value=0.34 Score=52.10 Aligned_cols=34 Identities=26% Similarity=0.373 Sum_probs=31.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r 81 (722)
.+|+|||+|.+|+-.|..|++.|.+|+++++.+.
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~ 180 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG 180 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCc
Confidence 6899999999999999999999999999998753
No 360
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=90.45 E-value=0.32 Score=51.74 Aligned_cols=32 Identities=28% Similarity=0.504 Sum_probs=29.7
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~ 79 (722)
++|+|||+|-.|.+.|..|+++|++|+++.++
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 36999999999999999999999999999984
No 361
>PLN02507 glutathione reductase
Probab=90.43 E-value=0.33 Score=55.81 Aligned_cols=34 Identities=21% Similarity=0.309 Sum_probs=31.8
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r 81 (722)
.+|+|||||..|+-.|..|++.|.+|+|+|+.++
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ 237 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKEL 237 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCC
Confidence 5799999999999999999999999999998764
No 362
>PRK06116 glutathione reductase; Validated
Probab=90.39 E-value=0.35 Score=54.73 Aligned_cols=35 Identities=29% Similarity=0.333 Sum_probs=32.2
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCc
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~ 82 (722)
.+|+|||||.+|+-.|..|++.|.+|+++++.+++
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~ 202 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAP 202 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 67999999999999999999999999999987643
No 363
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=90.38 E-value=0.34 Score=54.92 Aligned_cols=33 Identities=39% Similarity=0.556 Sum_probs=31.1
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
.+|+|||||..|+-+|..|.+.|.+|+|+++++
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 689999999999999999999999999999865
No 364
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=90.36 E-value=0.33 Score=56.11 Aligned_cols=34 Identities=44% Similarity=0.449 Sum_probs=31.2
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r 81 (722)
.+|+|||||.+|+-+|..|+..|.+|+|++..+.
T Consensus 352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~ 385 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPE 385 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcc
Confidence 6899999999999999999999999999987653
No 365
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.29 E-value=0.31 Score=55.49 Aligned_cols=34 Identities=26% Similarity=0.044 Sum_probs=31.4
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r 81 (722)
.+|+|+|.|.+|.+||..|.+.|.+|+|.|.++.
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~ 42 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAHLPAQALTLFCNA 42 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCc
Confidence 6799999999999999999999999999997543
No 366
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=90.28 E-value=0.36 Score=52.47 Aligned_cols=32 Identities=31% Similarity=0.421 Sum_probs=30.2
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~ 79 (722)
++|+|||+|.-|.+.|..|+++|++|++++++
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 67999999999999999999999999999874
No 367
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=90.17 E-value=0.32 Score=51.70 Aligned_cols=33 Identities=27% Similarity=0.515 Sum_probs=30.7
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
.+|+|||+|..|...|..|+++|++|+++|.++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 569999999999999999999999999999854
No 368
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=90.17 E-value=0.36 Score=54.49 Aligned_cols=35 Identities=26% Similarity=0.400 Sum_probs=32.1
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCc
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~ 82 (722)
.+|+|||+|..|+-.|..|++.|.+|+|+|+.+++
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 193 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLF 193 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 57999999999999999999999999999997643
No 369
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=90.09 E-value=0.32 Score=56.64 Aligned_cols=34 Identities=35% Similarity=0.469 Sum_probs=31.8
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r 81 (722)
.+|+|||||.+|+-.|..|++.|.+|+++++.++
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~ 177 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD 177 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCc
Confidence 6799999999999999999999999999999764
No 370
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=89.98 E-value=0.37 Score=51.32 Aligned_cols=31 Identities=35% Similarity=0.518 Sum_probs=29.2
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEec
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEG 78 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa 78 (722)
++|+|||+|.-|.+.|+.|+++|++|+++.+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 3699999999999999999999999999987
No 371
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=89.96 E-value=0.43 Score=51.17 Aligned_cols=33 Identities=27% Similarity=0.432 Sum_probs=30.1
Q ss_pred CcEEEECccHHHHHHHHHHHHCCC-cEEEEecCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGF-RVTVLEGRK 80 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~-~V~VLEa~~ 80 (722)
++|+|||+|..|.+.|+.|+..|+ +|+++|...
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~ 35 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVE 35 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 579999999999999999999887 899999844
No 372
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=89.79 E-value=0.33 Score=54.33 Aligned_cols=36 Identities=50% Similarity=0.704 Sum_probs=33.2
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCc
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~ 82 (722)
.++|+|+|-|.+|++||..|.+.|.+|+|.|.+..+
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 488999999999999999999999999999976654
No 373
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.61 E-value=0.39 Score=50.81 Aligned_cols=33 Identities=27% Similarity=0.383 Sum_probs=30.5
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
.+|+|||+|..|.+.|..|+++|++|+++|.++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 469999999999999999999999999998754
No 374
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=89.57 E-value=0.44 Score=52.06 Aligned_cols=33 Identities=36% Similarity=0.495 Sum_probs=30.0
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCc-EEEEecCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFR-VTVLEGRK 80 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~-V~VLEa~~ 80 (722)
.+|+|||+|..|+-+|..|.+.|.+ |+|+++.+
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 5799999999999999999999997 99998754
No 375
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=89.55 E-value=0.32 Score=43.13 Aligned_cols=33 Identities=39% Similarity=0.554 Sum_probs=30.4
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecC
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~ 79 (722)
..+|+|||||-.|..-+..|.+.|.+|+|+-..
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 378999999999999999999999999999887
No 376
>PLN02546 glutathione reductase
Probab=89.46 E-value=0.45 Score=55.41 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=32.3
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCc
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRA 82 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~ 82 (722)
.+|+|||||..|+-.|..|++.|.+|+|+|+.+++
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~i 287 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKV 287 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccc
Confidence 67999999999999999999999999999987654
No 377
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=89.39 E-value=0.41 Score=52.13 Aligned_cols=33 Identities=30% Similarity=0.569 Sum_probs=30.7
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
++|.|||.|.-||+.|..|++.|++|+.+|...
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 579999999999999999999999999999854
No 378
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=89.24 E-value=0.4 Score=53.75 Aligned_cols=33 Identities=24% Similarity=0.275 Sum_probs=31.0
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
++|+|||.|..|+..|..|+++|++|++++.+.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~ 36 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQ 36 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCH
Confidence 679999999999999999999999999999754
No 379
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=89.24 E-value=0.49 Score=49.85 Aligned_cols=33 Identities=30% Similarity=0.450 Sum_probs=30.7
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
.+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~ 174 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRD 174 (300)
T ss_pred CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCc
Confidence 689999999999999999999999999999854
No 380
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.21 E-value=0.44 Score=54.11 Aligned_cols=33 Identities=27% Similarity=0.585 Sum_probs=31.0
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
.+|.|+|.|.+|+++|..|.+.|++|++.|.++
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 579999999999999999999999999999865
No 381
>PRK12831 putative oxidoreductase; Provisional
Probab=89.20 E-value=0.47 Score=54.04 Aligned_cols=34 Identities=35% Similarity=0.546 Sum_probs=31.3
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
..+|+|||||..|+-+|..|.+.|.+|+|+++++
T Consensus 281 gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 281 GKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 3689999999999999999999999999999754
No 382
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=89.18 E-value=0.5 Score=52.07 Aligned_cols=33 Identities=36% Similarity=0.453 Sum_probs=30.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
.+|+|||+|..|+.+|..|...|.+|++++.+.
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 679999999999999999999999999999853
No 383
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.15 E-value=0.49 Score=50.79 Aligned_cols=33 Identities=27% Similarity=0.533 Sum_probs=29.7
Q ss_pred CcEEEECccHHHHHHHHHHHHCC--CcEEEEecCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLG--FRVTVLEGRK 80 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G--~~V~VLEa~~ 80 (722)
++|+|||+|..|.++|+.|+..| .+|.++|.+.
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 36999999999999999999999 4799999854
No 384
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=89.07 E-value=0.58 Score=50.18 Aligned_cols=34 Identities=29% Similarity=0.338 Sum_probs=31.5
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
.++|.|||+|.-|.+.|..|+++|++|+++.++.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 3789999999999999999999999999999864
No 385
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=88.92 E-value=0.61 Score=51.27 Aligned_cols=46 Identities=33% Similarity=0.516 Sum_probs=38.4
Q ss_pred CCcEEEECccHHHHHHHHHHHHCC-CcEEEEecC--------CCcceeeeeeecC
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLG-FRVTVLEGR--------KRAGGRVYTKKME 92 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G-~~V~VLEa~--------~r~GGr~~T~~~~ 92 (722)
+++|+|||||--|.++|+.|++.| .+|+|-+++ ...++++.+...+
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD 55 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVD 55 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEec
Confidence 368999999999999999999999 899999997 4555666665554
No 386
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=88.91 E-value=0.49 Score=54.15 Aligned_cols=35 Identities=26% Similarity=0.303 Sum_probs=30.3
Q ss_pred CcEEEECccHHHHHHHHHHHHC---CCcEEEEecCCCc
Q 004944 48 LRVLVIGAGLAGLAAARQLMRL---GFRVTVLEGRKRA 82 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~---G~~V~VLEa~~r~ 82 (722)
.+|+|||||..|+-.|..|+.. |.+|+|+|+.+++
T Consensus 188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~i 225 (486)
T TIGR01423 188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMI 225 (486)
T ss_pred CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcc
Confidence 6799999999999999876654 9999999998764
No 387
>PRK04148 hypothetical protein; Provisional
Probab=88.89 E-value=0.41 Score=44.53 Aligned_cols=33 Identities=24% Similarity=0.470 Sum_probs=30.4
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r 81 (722)
.+|++||.| .|...|..|++.|++|+.+|-+..
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 679999999 999999999999999999998765
No 388
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=88.87 E-value=0.53 Score=50.60 Aligned_cols=33 Identities=36% Similarity=0.454 Sum_probs=30.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
++|+|||+|..|.+.|..|+++|++|++++++.
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 579999999999999999999999999998853
No 389
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=88.77 E-value=0.63 Score=46.74 Aligned_cols=33 Identities=24% Similarity=0.446 Sum_probs=30.3
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecC
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~ 79 (722)
..+|+|||||-.|...|..|.+.|.+|+|++..
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 378999999999999999999999999999754
No 390
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=88.66 E-value=0.43 Score=53.39 Aligned_cols=33 Identities=36% Similarity=0.527 Sum_probs=30.7
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEecCCC
Q 004944 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (722)
Q Consensus 49 dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r 81 (722)
+|.|||.|..|+..|..|+++|++|++++.+..
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 699999999999999999999999999998653
No 391
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=88.56 E-value=1.5 Score=48.27 Aligned_cols=55 Identities=15% Similarity=0.131 Sum_probs=41.7
Q ss_pred eeee-CCChHHHHHHHHH-----cCCcccCceEEEEEecCCcEEEEE--CCEEEEeCEEEEcCCh
Q 004944 239 HCFL-PGGNGRLVQALVE-----NVPILYEKTVHTIRYGSDGVQVLA--GSQVFEGDMVLCTVPL 295 (722)
Q Consensus 239 ~~~~-~gG~~~L~~aLa~-----~l~I~ln~~V~~I~~~~~~v~V~~--~G~~~~AD~VI~AvP~ 295 (722)
.+|| ..-.+.++++|.. +++|+++++|++| +++++.+.+ +++.++||.||+|+.-
T Consensus 77 rvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~~~v~~~~~~~~~~a~~vIlAtGG 139 (376)
T TIGR03862 77 RVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGGTLRFETPDGQSTIEADAVVLALGG 139 (376)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCcEEEEECCCceEEecCEEEEcCCC
Confidence 3444 4567888888754 6789999999999 444577776 3457999999999974
No 392
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=88.49 E-value=0.95 Score=51.76 Aligned_cols=33 Identities=48% Similarity=0.622 Sum_probs=30.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
.+|+|+|+|..||.|+..+...|.+|+++|.++
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 789999999999999999999999999998854
No 393
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=88.47 E-value=0.6 Score=50.53 Aligned_cols=33 Identities=36% Similarity=0.415 Sum_probs=30.8
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
++|.|||+|.-|.+.|..|+++|++|++++++.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 679999999999999999999999999998853
No 394
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.42 E-value=0.62 Score=52.69 Aligned_cols=34 Identities=24% Similarity=0.395 Sum_probs=31.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r 81 (722)
.+|+|+|+|-+|+++|..|++.|++|++.|..+.
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 6799999999999999999999999999997654
No 395
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.29 E-value=0.56 Score=53.73 Aligned_cols=32 Identities=44% Similarity=0.573 Sum_probs=30.0
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~ 79 (722)
.+|+|+|.|.+|++++..|.+.|.+|++.|.+
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 67999999999999999999999999999964
No 396
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=88.27 E-value=0.63 Score=44.88 Aligned_cols=33 Identities=36% Similarity=0.583 Sum_probs=29.0
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
.+|.|||-|..|...|..|.++|++|.+++++.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 679999999999999999999999999999764
No 397
>PRK13748 putative mercuric reductase; Provisional
Probab=88.25 E-value=0.57 Score=54.62 Aligned_cols=32 Identities=38% Similarity=0.576 Sum_probs=30.2
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~ 79 (722)
.+|+|||||..|+-.|..|++.|.+|+|+++.
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~ 302 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTILARS 302 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecC
Confidence 57999999999999999999999999999974
No 398
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.23 E-value=0.65 Score=49.80 Aligned_cols=33 Identities=27% Similarity=0.459 Sum_probs=30.5
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
.+|.|||+|..|.+.|..|+++|++|++++.+.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 579999999999999999999999999999754
No 399
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=88.15 E-value=0.7 Score=49.17 Aligned_cols=33 Identities=30% Similarity=0.385 Sum_probs=30.8
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
.+|+|||+|..|...|..|+++|++|+++|.+.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 569999999999999999999999999999864
No 400
>PRK14694 putative mercuric reductase; Provisional
Probab=88.10 E-value=0.66 Score=52.82 Aligned_cols=31 Identities=52% Similarity=0.691 Sum_probs=29.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEec
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEG 78 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa 78 (722)
.+|+|||||..|+-.|..|++.|.+|+|++.
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~ 209 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLGSRVTVLAR 209 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEC
Confidence 5799999999999999999999999999986
No 401
>PRK14727 putative mercuric reductase; Provisional
Probab=88.10 E-value=0.64 Score=53.14 Aligned_cols=32 Identities=34% Similarity=0.490 Sum_probs=30.0
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~ 79 (722)
.+|+|||||..|+-.|..|++.|.+|+|+++.
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~ 220 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARS 220 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence 57999999999999999999999999999874
No 402
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=88.06 E-value=0.68 Score=46.38 Aligned_cols=32 Identities=25% Similarity=0.348 Sum_probs=30.0
Q ss_pred CcEEEECccHHHHHHHHHHHHCCC-cEEEEecC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGF-RVTVLEGR 79 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~-~V~VLEa~ 79 (722)
.+|+|||+|--|...|..|++.|+ +++|+|..
T Consensus 22 ~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 22 ATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 789999999999999999999999 59999984
No 403
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=87.82 E-value=0.76 Score=44.16 Aligned_cols=31 Identities=32% Similarity=0.366 Sum_probs=29.0
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEe
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLE 77 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLE 77 (722)
..+|+|||||-.|+.=|..|.+.|++|+|+.
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 3789999999999999999999999999994
No 404
>PTZ00052 thioredoxin reductase; Provisional
Probab=87.76 E-value=0.66 Score=53.36 Aligned_cols=31 Identities=42% Similarity=0.558 Sum_probs=29.5
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEec
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEG 78 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa 78 (722)
.+|+|||||..|+-.|..|++.|.+|+|++.
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~ 213 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVR 213 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEc
Confidence 4799999999999999999999999999986
No 405
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=87.66 E-value=0.61 Score=53.38 Aligned_cols=31 Identities=35% Similarity=0.482 Sum_probs=29.4
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEec
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEG 78 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa 78 (722)
.+|+|||||..|+-.|..|++.|.+|+|+++
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~ 211 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVR 211 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEe
Confidence 4799999999999999999999999999986
No 406
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.31 E-value=0.7 Score=52.22 Aligned_cols=33 Identities=45% Similarity=0.664 Sum_probs=30.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
..|+|+|+|-+|+++|..|++.|++|++.|.+.
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 579999999999999999999999999999754
No 407
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=87.30 E-value=0.46 Score=50.56 Aligned_cols=35 Identities=40% Similarity=0.409 Sum_probs=29.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
+.+||+|||||-||+-||.-|+--=..|+|||=.+
T Consensus 353 ~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~ 387 (520)
T COG3634 353 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP 387 (520)
T ss_pred CCceEEEECCCcchHHHHHhHHhhhheeeeeecch
Confidence 35799999999999999999984444799999643
No 408
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=87.27 E-value=0.7 Score=53.06 Aligned_cols=33 Identities=33% Similarity=0.440 Sum_probs=31.0
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
.+|.|||+|..|-.-|..|+++|++|+|+|.+.
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~ 38 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRA 38 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 569999999999999999999999999999864
No 409
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.10 E-value=0.64 Score=52.75 Aligned_cols=31 Identities=23% Similarity=0.420 Sum_probs=28.5
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~ 79 (722)
.+|+|+|.|.+|.+||..|.+ |.+|+|.|..
T Consensus 7 ~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~ 37 (454)
T PRK01368 7 QKIGVFGLGKTGISVYEELQN-KYDVIVYDDL 37 (454)
T ss_pred CEEEEEeecHHHHHHHHHHhC-CCEEEEECCC
Confidence 679999999999999999995 9999999954
No 410
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=86.87 E-value=0.78 Score=51.56 Aligned_cols=35 Identities=34% Similarity=0.505 Sum_probs=30.2
Q ss_pred CcEEEECccHHHHHHHHHHHH--------------CCCcEEEEecCCCc
Q 004944 48 LRVLVIGAGLAGLAAARQLMR--------------LGFRVTVLEGRKRA 82 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak--------------~G~~V~VLEa~~r~ 82 (722)
.+|+|||||.+|+-.|..|++ .|.+|+|+|+.+++
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l 222 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEV 222 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcc
Confidence 489999999999999999886 47889999997654
No 411
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=86.52 E-value=0.85 Score=49.26 Aligned_cols=31 Identities=26% Similarity=0.335 Sum_probs=29.3
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEecC
Q 004944 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (722)
Q Consensus 49 dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~ 79 (722)
+|.|||||--|.+-|..|+++|++|+++.++
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence 6999999999999999999999999999874
No 412
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.51 E-value=0.73 Score=50.04 Aligned_cols=46 Identities=30% Similarity=0.362 Sum_probs=42.7
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcceeeeeeecC
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGGRVYTKKME 92 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GGr~~T~~~~ 92 (722)
.+||||||-|+.=-.-|...++.|.+|+=||.+..-||.-.|+.+.
T Consensus 8 ~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfSms 53 (547)
T KOG4405|consen 8 EFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFSMS 53 (547)
T ss_pred hccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccceeec
Confidence 3999999999999999999999999999999999999998888775
No 413
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=86.35 E-value=0.83 Score=52.55 Aligned_cols=34 Identities=32% Similarity=0.437 Sum_probs=31.3
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r 81 (722)
.+|.|||+|..|..-|..|+++|++|+|+|.+..
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 5699999999999999999999999999997653
No 414
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=86.31 E-value=0.91 Score=51.54 Aligned_cols=34 Identities=44% Similarity=0.577 Sum_probs=30.8
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCC-cEEEEecCC
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGF-RVTVLEGRK 80 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~-~V~VLEa~~ 80 (722)
..+|+|||||..|+-+|..|.+.|. +|+|+++++
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 3689999999999999999999998 899999754
No 415
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=86.22 E-value=0.79 Score=52.63 Aligned_cols=33 Identities=24% Similarity=0.452 Sum_probs=30.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
++|+|||+|..|..-|..|+++|++|+|++.+.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 479999999999999999999999999999853
No 416
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=86.13 E-value=0.88 Score=48.04 Aligned_cols=32 Identities=28% Similarity=0.434 Sum_probs=29.7
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 49 dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
+|.|||.|..|.+.|..|.++|++|++++.+.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 69999999999999999999999999999753
No 417
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=86.03 E-value=0.77 Score=52.19 Aligned_cols=34 Identities=26% Similarity=0.509 Sum_probs=30.9
Q ss_pred CcEEEECccHHHHH-HHHHHHHCCCcEEEEecCCC
Q 004944 48 LRVLVIGAGLAGLA-AARQLMRLGFRVTVLEGRKR 81 (722)
Q Consensus 48 ~dVvIVGAGiAGLs-AA~~Lak~G~~V~VLEa~~r 81 (722)
.+|.|||.|-+|++ +|..|.+.|++|++.|....
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~ 42 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES 42 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence 67999999999999 59999999999999998653
No 418
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=86.02 E-value=1.1 Score=47.93 Aligned_cols=34 Identities=41% Similarity=0.522 Sum_probs=31.6
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
..+|+|||.|-.|+.+|..|...|.+|++++++.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 3789999999999999999999999999999874
No 419
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=85.86 E-value=1.1 Score=48.23 Aligned_cols=44 Identities=25% Similarity=0.320 Sum_probs=33.8
Q ss_pred cCCcccCceEEEEEecCCcEEEEE----CCE--EEEeCEEEEcCChhhhh
Q 004944 256 NVPILYEKTVHTIRYGSDGVQVLA----GSQ--VFEGDMVLCTVPLGVLK 299 (722)
Q Consensus 256 ~l~I~ln~~V~~I~~~~~~v~V~~----~G~--~~~AD~VI~AvP~~~l~ 299 (722)
+++|+++++|+.+..+++++++.. +|+ +++||.||-|-......
T Consensus 125 gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~v 174 (356)
T PF01494_consen 125 GVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGAHSKV 174 (356)
T ss_dssp TEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-HH
T ss_pred hhhheeeeecccccccccccccccccccCCceeEEEEeeeecccCcccch
Confidence 578999999999999988877655 343 78999999998766543
No 420
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=85.54 E-value=0.98 Score=50.09 Aligned_cols=31 Identities=19% Similarity=0.378 Sum_probs=28.2
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 49 dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
+|.|||.|..|+..|..|+. |++|+++|.+.
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~ 32 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILP 32 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCH
Confidence 69999999999999988875 99999999865
No 421
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=85.52 E-value=0.79 Score=55.02 Aligned_cols=33 Identities=27% Similarity=0.309 Sum_probs=31.1
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
.+|+|||||..|-.-|+.++.+|++|+++|.++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQ 346 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCH
Confidence 579999999999999999999999999999865
No 422
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.49 E-value=0.95 Score=52.03 Aligned_cols=33 Identities=45% Similarity=0.581 Sum_probs=30.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
.+|.|||.|.+|+++|..|.+.|++|++.|...
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 579999999999999999999999999999754
No 423
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=85.32 E-value=59 Score=35.80 Aligned_cols=37 Identities=24% Similarity=0.261 Sum_probs=31.0
Q ss_pred CcEEEcccccccccC---ccchHHHHHHHHHHHHHHHHHh
Q 004944 454 GRLFFAGEATIRRYP---ATMHGAFLSGLRETAKMAHCAN 490 (722)
Q Consensus 454 ~~L~fAGd~ts~~~~---g~~eGAi~SG~~AA~~Il~~l~ 490 (722)
++++++||+...-.| +++.-|+.||..||+.|.+.+.
T Consensus 264 ~~v~lvGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l~ 303 (388)
T TIGR02023 264 GRAMLVGDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYLQ 303 (388)
T ss_pred CCEEEEeccccCcCCcccccHHHHHHHHHHHHHHHHHHHh
Confidence 789999999874322 5899999999999999998764
No 424
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=85.25 E-value=1 Score=54.47 Aligned_cols=33 Identities=36% Similarity=0.551 Sum_probs=30.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCc-EEEEecCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFR-VTVLEGRK 80 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~-V~VLEa~~ 80 (722)
.+|||||||..|+-+|..|.+.|.+ |+|+++++
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 6899999999999999999999997 99999864
No 425
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=85.24 E-value=1.9 Score=49.23 Aligned_cols=34 Identities=35% Similarity=0.509 Sum_probs=30.6
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCC-cEEEEecCC
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGF-RVTVLEGRK 80 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~-~V~VLEa~~ 80 (722)
..+|+|||+|..|+-+|..+.+.|. +|+|+++++
T Consensus 282 gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~ 316 (467)
T TIGR01318 282 GKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRD 316 (467)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecC
Confidence 3789999999999999999999996 699999865
No 426
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=85.11 E-value=1.6 Score=37.22 Aligned_cols=31 Identities=32% Similarity=0.445 Sum_probs=28.5
Q ss_pred CcEEEECccHHHHHHHHHHHHC-CCcEEEEec
Q 004944 48 LRVLVIGAGLAGLAAARQLMRL-GFRVTVLEG 78 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~-G~~V~VLEa 78 (722)
.+++|+|+|..|..+|..|.+. +.+|.++++
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 6799999999999999999998 578999987
No 427
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=84.97 E-value=1.3 Score=44.30 Aligned_cols=33 Identities=27% Similarity=0.354 Sum_probs=30.7
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
+.|+|+|.|-.|..+|..|.+.|++|++.|.+.
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 679999999999999999999999999998753
No 428
>PRK06223 malate dehydrogenase; Reviewed
Probab=84.88 E-value=1.2 Score=47.57 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=30.0
Q ss_pred CcEEEECccHHHHHHHHHHHHCCC-cEEEEecCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGF-RVTVLEGRK 80 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~-~V~VLEa~~ 80 (722)
++|+|||||..|.+.|+.|+..|+ +|.++|...
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~ 36 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVE 36 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCC
Confidence 689999999999999999999876 999999854
No 429
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=84.83 E-value=1.1 Score=51.11 Aligned_cols=33 Identities=21% Similarity=0.286 Sum_probs=29.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCC--CcEEEEecCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLG--FRVTVLEGRK 80 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G--~~V~VLEa~~ 80 (722)
++|+|||+|..||..|..|+++| ++|+.+|.+.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~ 36 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV 36 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence 67999999999999999999985 7799999754
No 430
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.83 E-value=1.1 Score=51.15 Aligned_cols=32 Identities=44% Similarity=0.572 Sum_probs=29.8
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~ 79 (722)
.+|.|+|.|-+|+++|..|.+.|.+|++.|..
T Consensus 16 ~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~ 47 (473)
T PRK00141 16 GRVLVAGAGVSGRGIAAMLSELGCDVVVADDN 47 (473)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCEEEEECCC
Confidence 56999999999999999999999999999964
No 431
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=84.82 E-value=1.2 Score=47.15 Aligned_cols=32 Identities=44% Similarity=0.659 Sum_probs=29.9
Q ss_pred CcEEEECccHHHHHHHHHHHHCCC-cEEEEecC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGF-RVTVLEGR 79 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~-~V~VLEa~ 79 (722)
.+|+|||+|-+|-++|+.|++.|. +|+|++++
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~ 160 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD 160 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC
Confidence 689999999999999999999998 69999885
No 432
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=84.77 E-value=1.4 Score=45.13 Aligned_cols=32 Identities=34% Similarity=0.720 Sum_probs=29.2
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCc---EEEEecC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFR---VTVLEGR 79 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~---V~VLEa~ 79 (722)
.+|+|+|||-+|..+|+.|.+.|.+ |.|++++
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 6899999999999999999999974 8888886
No 433
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=84.72 E-value=1.3 Score=49.49 Aligned_cols=33 Identities=33% Similarity=0.306 Sum_probs=30.9
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
.+|+|+|+|..|+.+|..|...|.+|+|+|.++
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 689999999999999999999999999999864
No 434
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=84.55 E-value=1.1 Score=53.91 Aligned_cols=34 Identities=24% Similarity=0.263 Sum_probs=31.6
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
-.+|+|||||..|-.-|+.++.+|++|+++|.+.
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQ 346 (714)
T ss_pred cceEEEECCchHHHHHHHHHHhCCCeEEEEeCCH
Confidence 3679999999999999999999999999999864
No 435
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=84.35 E-value=1.5 Score=47.43 Aligned_cols=35 Identities=20% Similarity=0.289 Sum_probs=31.3
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCC-cEEEEecCCC
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGF-RVTVLEGRKR 81 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~-~V~VLEa~~r 81 (722)
..+|+|||||-.|-+.|+.|+..|+ +|.|+|.+..
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 3689999999999999999999996 8999998654
No 436
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=84.26 E-value=1 Score=45.29 Aligned_cols=35 Identities=23% Similarity=0.365 Sum_probs=31.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 46 NKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
+...|.|||||..|-..|...+..|++|.|++++.
T Consensus 10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~ 44 (298)
T KOG2304|consen 10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANE 44 (298)
T ss_pred cccceEEEcccccchhHHHHHHhcCCceEEecCCH
Confidence 34789999999999999999999999999999864
No 437
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=84.08 E-value=1.1 Score=47.67 Aligned_cols=32 Identities=31% Similarity=0.446 Sum_probs=30.4
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~ 79 (722)
.+|.|||||..|-.-|+.++..|++|+++|.+
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~ 35 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDIS 35 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCCceEEEeCC
Confidence 67999999999999999999988999999997
No 438
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=84.01 E-value=19 Score=42.27 Aligned_cols=40 Identities=8% Similarity=-0.019 Sum_probs=29.6
Q ss_pred cCCcccCceEEEEEec-CCcEEEEE-----CCE--EEEeCEEEEcCCh
Q 004944 256 NVPILYEKTVHTIRYG-SDGVQVLA-----GSQ--VFEGDMVLCTVPL 295 (722)
Q Consensus 256 ~l~I~ln~~V~~I~~~-~~~v~V~~-----~G~--~~~AD~VI~AvP~ 295 (722)
+++|+.++.++++..+ +++|.... +|+ .+.|+.||+|+.-
T Consensus 140 gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 187 (570)
T PRK05675 140 GTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGG 187 (570)
T ss_pred CCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCC
Confidence 6789999999999885 45554221 444 5789999999964
No 439
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=83.62 E-value=1.6 Score=46.44 Aligned_cols=33 Identities=36% Similarity=0.489 Sum_probs=31.1
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
.+|+|||+|-.|.+.|..|...|.+|+|++++.
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 789999999999999999999999999999864
No 440
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=83.44 E-value=1.2 Score=41.41 Aligned_cols=33 Identities=39% Similarity=0.673 Sum_probs=29.5
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCC-cEEEEecC
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGF-RVTVLEGR 79 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~-~V~VLEa~ 79 (722)
+.+|+|||+|--|...|..|++.|. +++|+|..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 3789999999999999999999998 69999983
No 441
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=83.35 E-value=0.59 Score=50.45 Aligned_cols=37 Identities=43% Similarity=0.582 Sum_probs=35.1
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCCcce
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKRAGG 84 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r~GG 84 (722)
.+.+|||||..||-.+.-..+.|-+||++|..+.+||
T Consensus 212 k~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~ 248 (506)
T KOG1335|consen 212 KKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGG 248 (506)
T ss_pred ceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhcc
Confidence 5799999999999999999999999999999999886
No 442
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=83.32 E-value=1.2 Score=47.86 Aligned_cols=34 Identities=32% Similarity=0.614 Sum_probs=29.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r 81 (722)
++|.|+|+|.-|...|+.|+++|.+|+++=+.++
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~ 34 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR 34 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH
Confidence 4799999999999999999999977888776553
No 443
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=83.30 E-value=1.6 Score=45.80 Aligned_cols=32 Identities=31% Similarity=0.462 Sum_probs=29.7
Q ss_pred CcEEEECccHHHHHHHHHHHHCCC-cEEEEecC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGF-RVTVLEGR 79 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~-~V~VLEa~ 79 (722)
.+|+|||+|-.|..+|..|++.|+ +++|+|..
T Consensus 31 s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 31 AHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 789999999999999999999995 79999974
No 444
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=83.12 E-value=1.1 Score=53.79 Aligned_cols=33 Identities=24% Similarity=0.419 Sum_probs=31.1
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
.+|.|||||..|-.-|+.++.+|++|+++|.++
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~ 368 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATP 368 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCH
Confidence 579999999999999999999999999999865
No 445
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=83.08 E-value=1.6 Score=49.89 Aligned_cols=33 Identities=48% Similarity=0.635 Sum_probs=30.7
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
.+|+|+|+|..|+.|+..+...|.+|+++|.+.
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~ 197 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP 197 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 679999999999999999999999999998854
No 446
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=83.06 E-value=2 Score=40.46 Aligned_cols=33 Identities=27% Similarity=0.502 Sum_probs=29.5
Q ss_pred CcEEEECc-cHHHHHHHHHHHHCCC--cEEEEecCC
Q 004944 48 LRVLVIGA-GLAGLAAARQLMRLGF--RVTVLEGRK 80 (722)
Q Consensus 48 ~dVvIVGA-GiAGLsAA~~Lak~G~--~V~VLEa~~ 80 (722)
++|+|||| |--|-+.|+.|...+. ++.++|...
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 47999999 9999999999999975 699999863
No 447
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=82.86 E-value=1.6 Score=46.73 Aligned_cols=32 Identities=28% Similarity=0.478 Sum_probs=29.2
Q ss_pred cEEEECccHHHHHHHHHHHHCC--CcEEEEecCC
Q 004944 49 RVLVIGAGLAGLAAARQLMRLG--FRVTVLEGRK 80 (722)
Q Consensus 49 dVvIVGAGiAGLsAA~~Lak~G--~~V~VLEa~~ 80 (722)
+|+|||+|-.|.+.|+.|+..| .+++|++...
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~ 35 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINE 35 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 6999999999999999999999 4799999854
No 448
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=82.82 E-value=1.6 Score=44.22 Aligned_cols=32 Identities=22% Similarity=0.416 Sum_probs=28.4
Q ss_pred CcEEEEC-ccHHHHHHHHHHHHCCCcEEEEecC
Q 004944 48 LRVLVIG-AGLAGLAAARQLMRLGFRVTVLEGR 79 (722)
Q Consensus 48 ~dVvIVG-AGiAGLsAA~~Lak~G~~V~VLEa~ 79 (722)
++|.||| +|.-|.+.|..|+++|++|+++.++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~ 33 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRD 33 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 3699997 7999999999999999999998663
No 449
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=82.46 E-value=81 Score=34.53 Aligned_cols=41 Identities=17% Similarity=0.153 Sum_probs=32.1
Q ss_pred cCCcccCceEEEEEec-CCcEEEEE-CCEEEEeCEEEEcCChhh
Q 004944 256 NVPILYEKTVHTIRYG-SDGVQVLA-GSQVFEGDMVLCTVPLGV 297 (722)
Q Consensus 256 ~l~I~ln~~V~~I~~~-~~~v~V~~-~G~~~~AD~VI~AvP~~~ 297 (722)
++.+ +.++|+.+..+ ++.+.|++ +|++++||.||.|.+...
T Consensus 99 gv~~-~~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 99 GVLW-LERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred CcEE-EccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 4556 46789998877 55677777 677999999999998765
No 450
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=82.45 E-value=2.1 Score=38.32 Aligned_cols=31 Identities=35% Similarity=0.492 Sum_probs=28.0
Q ss_pred EEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 50 VLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 50 VvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
|+|+|.|-.|...|..|.+.+.+|+++|...
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence 7999999999999999999777999999975
No 451
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.39 E-value=1.4 Score=49.97 Aligned_cols=32 Identities=38% Similarity=0.460 Sum_probs=29.8
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~ 79 (722)
.+|.|||.|-+|+++|.+|.+.|++|++.|..
T Consensus 10 ~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~ 41 (460)
T PRK01390 10 KTVAVFGLGGSGLATARALVAGGAEVIAWDDN 41 (460)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEECCC
Confidence 57999999999999999999999999999964
No 452
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=82.38 E-value=1.7 Score=52.15 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=30.7
Q ss_pred CCcEEEECccHHHHHHHHHHH-HCCCcEEEEecCC
Q 004944 47 KLRVLVIGAGLAGLAAARQLM-RLGFRVTVLEGRK 80 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~La-k~G~~V~VLEa~~ 80 (722)
-.+|+|||||..|..-|..++ ++|++|+++|.++
T Consensus 304 i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~ 338 (699)
T TIGR02440 304 IKKVGILGGGLMGGGIASVTATKAGIPVRIKDINP 338 (699)
T ss_pred ccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 367999999999999999998 5899999999865
No 453
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.37 E-value=1.5 Score=49.11 Aligned_cols=33 Identities=33% Similarity=0.470 Sum_probs=30.3
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
.+|+|||-|.+|.++|..|.+.|++|++.|.+.
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~ 36 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSL 36 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 569999999999999999999999999999643
No 454
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=82.13 E-value=1.9 Score=45.30 Aligned_cols=33 Identities=36% Similarity=0.457 Sum_probs=30.3
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecC
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~ 79 (722)
..+|+|+|+|-+|.++|+.|++.|++|+|+.++
T Consensus 117 ~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~ 149 (270)
T TIGR00507 117 NQRVLIIGAGGAARAVALPLLKADCNVIIANRT 149 (270)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 367999999999999999999999999999875
No 455
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.78 E-value=1.6 Score=49.40 Aligned_cols=33 Identities=33% Similarity=0.548 Sum_probs=30.4
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
--|+|||.|-+|+++|..|.+.|++|++.|..+
T Consensus 7 ~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 39 (448)
T PRK03803 7 GLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE 39 (448)
T ss_pred CeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence 459999999999999999999999999999754
No 456
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=81.69 E-value=1.6 Score=46.33 Aligned_cols=32 Identities=25% Similarity=0.405 Sum_probs=29.4
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 49 dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
+|.|||.|..|...|..|++.|++|++++++.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 48999999999999999999999999998753
No 457
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=81.23 E-value=1.6 Score=52.32 Aligned_cols=34 Identities=26% Similarity=0.301 Sum_probs=30.9
Q ss_pred CCcEEEECccHHHHHHHHHHH-HCCCcEEEEecCC
Q 004944 47 KLRVLVIGAGLAGLAAARQLM-RLGFRVTVLEGRK 80 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~La-k~G~~V~VLEa~~ 80 (722)
-.+|+|||||..|-.-|+.++ .+|++|+++|.+.
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~ 343 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP 343 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence 367999999999999999998 8899999999864
No 458
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=81.00 E-value=2.3 Score=42.08 Aligned_cols=32 Identities=34% Similarity=0.439 Sum_probs=29.1
Q ss_pred CcEEEECc-cHHHHHHHHHHHHCCCcEEEEecC
Q 004944 48 LRVLVIGA-GLAGLAAARQLMRLGFRVTVLEGR 79 (722)
Q Consensus 48 ~dVvIVGA-GiAGLsAA~~Lak~G~~V~VLEa~ 79 (722)
.+++|+|| |-.|..+|..|++.|++|+++.++
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 67999997 999999999999999999999664
No 459
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=80.96 E-value=2.4 Score=44.99 Aligned_cols=33 Identities=30% Similarity=0.328 Sum_probs=29.9
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCc-EEEEecCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFR-VTVLEGRK 80 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~-V~VLEa~~ 80 (722)
..|+|+|||=+|.++|+.|++.|.+ |+|+.++.
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 6799999999999999999999986 99998753
No 460
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=80.93 E-value=1.9 Score=53.40 Aligned_cols=34 Identities=41% Similarity=0.525 Sum_probs=31.3
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
..+|+|||||..|+-+|..+.+.|.+|+++.+++
T Consensus 447 Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~ 480 (944)
T PRK12779 447 GKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT 480 (944)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence 3689999999999999999999999999998764
No 461
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=80.85 E-value=0.89 Score=50.36 Aligned_cols=39 Identities=23% Similarity=0.365 Sum_probs=29.6
Q ss_pred cCCcccCceEEEEEecCCcEEEEECCEEEEeCEEEEcCChh
Q 004944 256 NVPILYEKTVHTIRYGSDGVQVLAGSQVFEGDMVLCTVPLG 296 (722)
Q Consensus 256 ~l~I~ln~~V~~I~~~~~~v~V~~~G~~~~AD~VI~AvP~~ 296 (722)
|++|++++.|++|.. ++|++..+++++.++.||.|+...
T Consensus 223 GV~v~l~~~Vt~v~~--~~v~~~~g~~~I~~~tvvWaaGv~ 261 (405)
T COG1252 223 GVEVLLGTPVTEVTP--DGVTLKDGEEEIPADTVVWAAGVR 261 (405)
T ss_pred CCEEEcCCceEEECC--CcEEEccCCeeEecCEEEEcCCCc
Confidence 789999999999974 445544333369999999998654
No 462
>PTZ00117 malate dehydrogenase; Provisional
Probab=80.85 E-value=2.3 Score=45.86 Aligned_cols=35 Identities=23% Similarity=0.316 Sum_probs=31.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCC-CcEEEEecCC
Q 004944 46 NKLRVLVIGAGLAGLAAARQLMRLG-FRVTVLEGRK 80 (722)
Q Consensus 46 ~~~dVvIVGAGiAGLsAA~~Lak~G-~~V~VLEa~~ 80 (722)
++.+|+|||||-.|-+.|+.|+..| .++.|+|.+.
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~ 39 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIK 39 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 3478999999999999999999999 5899999854
No 463
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=80.63 E-value=2 Score=45.85 Aligned_cols=33 Identities=24% Similarity=0.436 Sum_probs=30.4
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
.+|.|||.|.-|..-|..|+++|++|++++++.
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~ 34 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNP 34 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 469999999999999999999999999998854
No 464
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=80.61 E-value=2.2 Score=47.41 Aligned_cols=33 Identities=33% Similarity=0.354 Sum_probs=30.9
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
..|+|||.|..|+.+|..|...|.+|+|+|..+
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 789999999999999999999999999999754
No 465
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=80.56 E-value=2.3 Score=46.27 Aligned_cols=32 Identities=44% Similarity=0.689 Sum_probs=30.1
Q ss_pred CcEEEECccHHHHHHHHHHHHCCC-cEEEEecC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGF-RVTVLEGR 79 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~-~V~VLEa~ 79 (722)
.+|+|||+|--|-..|..|+++|. +++|+|..
T Consensus 25 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 25 KHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 789999999999999999999998 79999983
No 466
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=80.45 E-value=1.8 Score=48.31 Aligned_cols=31 Identities=19% Similarity=0.243 Sum_probs=28.2
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~ 79 (722)
++|.|||.|-+|.++|..|. .|.+|++.|..
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~ 31 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDK 31 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCC
Confidence 35899999999999999999 99999999954
No 467
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=80.44 E-value=2.7 Score=39.71 Aligned_cols=33 Identities=33% Similarity=0.496 Sum_probs=29.5
Q ss_pred CcEEEECccHHHHHHHHHHHHCC-CcEEEEecCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLG-FRVTVLEGRK 80 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G-~~V~VLEa~~ 80 (722)
.+|+|||+|..|.+.|..|.+.| .+|++++++.
T Consensus 20 ~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~ 53 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAELGAAKIVIVNRTL 53 (155)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 67999999999999999999996 7899998753
No 468
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=80.33 E-value=2.5 Score=42.69 Aligned_cols=32 Identities=28% Similarity=0.321 Sum_probs=29.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCc-EEEEecC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFR-VTVLEGR 79 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~-V~VLEa~ 79 (722)
.+|+|||+|-.|...|..|++.|.. ++|+|..
T Consensus 29 ~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 29 AKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 7899999999999999999999984 9999984
No 469
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=80.09 E-value=2.3 Score=46.23 Aligned_cols=32 Identities=38% Similarity=0.650 Sum_probs=29.9
Q ss_pred CcEEEECccHHHHHHHHHHHHCCC-cEEEEecC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGF-RVTVLEGR 79 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~-~V~VLEa~ 79 (722)
.+|+|||+|--|..+|..|+++|+ +++|+|..
T Consensus 25 ~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D 57 (338)
T PRK12475 25 KHVLIVGAGALGAANAEALVRAGIGKLTIADRD 57 (338)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 779999999999999999999998 79999984
No 470
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=80.02 E-value=2 Score=45.79 Aligned_cols=31 Identities=29% Similarity=0.371 Sum_probs=28.4
Q ss_pred EEEECccHHHHHHHHHHHHCCC-cEEEEecCC
Q 004944 50 VLVIGAGLAGLAAARQLMRLGF-RVTVLEGRK 80 (722)
Q Consensus 50 VvIVGAGiAGLsAA~~Lak~G~-~V~VLEa~~ 80 (722)
|+|||||..|.+.|+.|+..|+ +|+++|.+.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 6899999999999999999887 999999864
No 471
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=79.95 E-value=2.7 Score=45.22 Aligned_cols=34 Identities=24% Similarity=0.503 Sum_probs=30.1
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCC--cEEEEecCC
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGF--RVTVLEGRK 80 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~--~V~VLEa~~ 80 (722)
+.+|+|||+|-.|-++|+.|+..|. ++.|+|...
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 3789999999999999999999886 699999754
No 472
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=79.76 E-value=1.8 Score=49.16 Aligned_cols=33 Identities=21% Similarity=0.288 Sum_probs=30.3
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecC
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGR 79 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~ 79 (722)
..+|+|||+|.+|+=.|..|++.+.+|+++.++
T Consensus 204 gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~ 236 (461)
T PLN02172 204 NEVVVVIGNFASGADISRDIAKVAKEVHIASRA 236 (461)
T ss_pred CCEEEEECCCcCHHHHHHHHHHhCCeEEEEEee
Confidence 468999999999999999999999999998874
No 473
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.71 E-value=2.3 Score=48.01 Aligned_cols=33 Identities=30% Similarity=0.564 Sum_probs=30.7
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
.+|.|||-|-+|++++..|++.|++|++.|...
T Consensus 7 ~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~ 39 (438)
T PRK03806 7 KKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRI 39 (438)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 679999999999999999999999999999754
No 474
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=79.64 E-value=2.2 Score=50.74 Aligned_cols=39 Identities=15% Similarity=0.237 Sum_probs=32.6
Q ss_pred CcEEEcccccccccCccchHHHHHHHHHHHHHHHHHhhhhh
Q 004944 454 GRLFFAGEATIRRYPATMHGAFLSGLRETAKMAHCANARAL 494 (722)
Q Consensus 454 ~~L~fAGd~ts~~~~g~~eGAi~SG~~AA~~Il~~l~~~~~ 494 (722)
++||.+||.... +..+..|+..|..||..|.+.+.++..
T Consensus 467 pgVfA~GDv~~g--~~~v~~Ai~~G~~AA~~I~~~L~g~~~ 505 (652)
T PRK12814 467 AGVFAGGDCVTG--ADIAINAVEQGKRAAHAIDLFLNGKPV 505 (652)
T ss_pred CCEEEcCCcCCC--chHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 899999999863 456788999999999999999975443
No 475
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=79.43 E-value=2.1 Score=40.15 Aligned_cols=31 Identities=45% Similarity=0.656 Sum_probs=27.5
Q ss_pred EEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 50 VLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 50 VvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
++|+|||.-+.+.|..++..|++|+|+|-+.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~ 31 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRP 31 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-C
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 5899999999999999999999999999874
No 476
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=78.96 E-value=2.9 Score=42.60 Aligned_cols=31 Identities=32% Similarity=0.644 Sum_probs=28.7
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEe
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLE 77 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLE 77 (722)
..+|+|||||-.++.=+..|.+.|.+|+|+=
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVa 55 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKKGCYVYILS 55 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 4789999999999999999999999999993
No 477
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=78.86 E-value=2.6 Score=44.82 Aligned_cols=33 Identities=24% Similarity=0.583 Sum_probs=30.2
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
++|.|||.|..|...|..|++.|++|++++.+.
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~ 35 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNP 35 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 579999999999999999999999999998754
No 478
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=78.82 E-value=3 Score=44.89 Aligned_cols=34 Identities=24% Similarity=0.469 Sum_probs=30.5
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCC--cEEEEecCC
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGF--RVTVLEGRK 80 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~--~V~VLEa~~ 80 (722)
..+|+|||+|-.|-+.|+.|+..|. ++.|+|.+.
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~ 41 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK 41 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 4789999999999999999999987 799999743
No 479
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=78.77 E-value=3.1 Score=40.67 Aligned_cols=31 Identities=29% Similarity=0.329 Sum_probs=28.6
Q ss_pred cEEEECccHHHHHHHHHHHHCCCc-EEEEecC
Q 004944 49 RVLVIGAGLAGLAAARQLMRLGFR-VTVLEGR 79 (722)
Q Consensus 49 dVvIVGAGiAGLsAA~~Lak~G~~-V~VLEa~ 79 (722)
+|+|||+|-.|-..|..|++.|+. ++|+|..
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 489999999999999999999984 9999984
No 480
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=78.71 E-value=2.6 Score=47.63 Aligned_cols=34 Identities=26% Similarity=0.511 Sum_probs=31.1
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r 81 (722)
++|+|+|+|-.|...|..|.+.|++|+++|++..
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~ 34 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE 34 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence 3699999999999999999999999999998653
No 481
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=78.64 E-value=2.4 Score=48.28 Aligned_cols=34 Identities=21% Similarity=0.349 Sum_probs=31.5
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r 81 (722)
.+|.|||.|..|...|..|+++|++|+|++++..
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~ 35 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYE 35 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 5799999999999999999999999999998654
No 482
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=78.43 E-value=2.7 Score=47.90 Aligned_cols=37 Identities=14% Similarity=0.145 Sum_probs=31.4
Q ss_pred CcEEEcccccccccCccchHHHHHHHHHHHHHHHHHhhh
Q 004944 454 GRLFFAGEATIRRYPATMHGAFLSGLRETAKMAHCANAR 492 (722)
Q Consensus 454 ~~L~fAGd~ts~~~~g~~eGAi~SG~~AA~~Il~~l~~~ 492 (722)
++||.+||.+.. +..+..|+..|..||..|.+.+.+.
T Consensus 431 ~gVfa~GD~~~g--~~~~~~Av~~G~~AA~~i~~~L~g~ 467 (471)
T PRK12810 431 PKVFAAGDMRRG--QSLVVWAIAEGRQAARAIDAYLMGS 467 (471)
T ss_pred CCEEEccccCCC--chhHHHHHHHHHHHHHHHHHHHhcC
Confidence 899999999873 3467889999999999999988653
No 483
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=78.40 E-value=3.2 Score=41.64 Aligned_cols=33 Identities=33% Similarity=0.482 Sum_probs=30.1
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCC-cEEEEecC
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGF-RVTVLEGR 79 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~-~V~VLEa~ 79 (722)
+.+|+|||.|-.|..+|..|++.|. +++|+|..
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 3789999999999999999999998 79999883
No 484
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=78.32 E-value=0.95 Score=49.68 Aligned_cols=74 Identities=16% Similarity=0.199 Sum_probs=0.0
Q ss_pred hhHhHHHHHHHHHHHhhhccccccccccccCCCCCCCCCCcEEEECccHHHHHHHHHHHHC--------------CCcEE
Q 004944 9 HCHSLLDSAYNYLVSNGYINFGVAPEIKEKIPVEPSSNKLRVLVIGAGLAGLAAARQLMRL--------------GFRVT 74 (722)
Q Consensus 9 ~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~p~~~~~~~~dVvIVGAGiAGLsAA~~Lak~--------------G~~V~ 74 (722)
+|.+-+--+.+..-=+--+=..+-++....++.+..+.--.++|||||++|.-.|.+|+.. -.+|+
T Consensus 180 e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vt 259 (491)
T KOG2495|consen 180 ENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVT 259 (491)
T ss_pred hchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEE
Q ss_pred EEecCCCc
Q 004944 75 VLEGRKRA 82 (722)
Q Consensus 75 VLEa~~r~ 82 (722)
++||.|.+
T Consensus 260 LiEA~d~i 267 (491)
T KOG2495|consen 260 LIEAADHI 267 (491)
T ss_pred eeccchhH
No 485
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=78.28 E-value=3.1 Score=42.98 Aligned_cols=32 Identities=38% Similarity=0.513 Sum_probs=29.3
Q ss_pred CcEEEECccHHHHHHHHHHHHCCC-cEEEEecC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGF-RVTVLEGR 79 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~-~V~VLEa~ 79 (722)
.+|+|||+|-.|..+|..|++.|. +++|+|..
T Consensus 25 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 57 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD 57 (240)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 789999999999999999999997 68888873
No 486
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=78.24 E-value=3.1 Score=43.90 Aligned_cols=33 Identities=33% Similarity=0.511 Sum_probs=30.1
Q ss_pred CcEEEECccHHHHHHHHHHHHCC-CcEEEEecCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLG-FRVTVLEGRK 80 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G-~~V~VLEa~~ 80 (722)
.+|+|+|+|-+|.++|+.|++.| .+|+|+.++.
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~ 157 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGVAEITIVNRTV 157 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 67999999999999999999999 6899998853
No 487
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=77.88 E-value=2.6 Score=40.55 Aligned_cols=33 Identities=52% Similarity=0.564 Sum_probs=27.2
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
+.++|+|=|.-|-.+|..|+..|.+|+|.|..+
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 679999999999999999999999999999854
No 488
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=77.86 E-value=2.7 Score=46.49 Aligned_cols=32 Identities=31% Similarity=0.503 Sum_probs=30.2
Q ss_pred CcEEEEC-ccHHHHHHHHHHHHCCCcEEEEecC
Q 004944 48 LRVLVIG-AGLAGLAAARQLMRLGFRVTVLEGR 79 (722)
Q Consensus 48 ~dVvIVG-AGiAGLsAA~~Lak~G~~V~VLEa~ 79 (722)
.+|+||| .|.-|-+.|..|.++|++|++++++
T Consensus 99 ~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 99 RPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred ceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCC
Confidence 7799999 8999999999999999999999975
No 489
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=77.81 E-value=3.1 Score=47.70 Aligned_cols=36 Identities=28% Similarity=0.354 Sum_probs=30.4
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCC-cEEEEecCCCc
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGF-RVTVLEGRKRA 82 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~-~V~VLEa~~r~ 82 (722)
..+|+|||||..|+-+|..+.+.|. +|+|+|..+++
T Consensus 283 gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~~ 319 (485)
T TIGR01317 283 GKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPKP 319 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCCC
Confidence 3689999999999999988888875 69999886543
No 490
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=77.80 E-value=3 Score=46.67 Aligned_cols=33 Identities=39% Similarity=0.408 Sum_probs=31.0
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
..|+|||.|..|..+|..|...|.+|+|+|..+
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp 245 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDP 245 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 679999999999999999999999999999864
No 491
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=77.72 E-value=3 Score=44.52 Aligned_cols=32 Identities=22% Similarity=0.351 Sum_probs=29.9
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 49 dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
+|.|||.|..|..-|..|.++|++|++++++.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~ 33 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQ 33 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCH
Confidence 69999999999999999999999999998864
No 492
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=77.71 E-value=3.5 Score=44.91 Aligned_cols=33 Identities=24% Similarity=0.277 Sum_probs=28.2
Q ss_pred CCCCcEEEECccHHHHHHHHHHHHCCCcEEEEec
Q 004944 45 SNKLRVLVIGAGLAGLAAARQLMRLGFRVTVLEG 78 (722)
Q Consensus 45 ~~~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa 78 (722)
+.+++|+|||+|.-|.+.|..|+++| .|+++-+
T Consensus 5 ~~~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~ 37 (341)
T PRK12439 5 KREPKVVVLGGGSWGTTVASICARRG-PTLQWVR 37 (341)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCC-CEEEEeC
Confidence 44578999999999999999999999 6776654
No 493
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=77.70 E-value=2.5 Score=47.53 Aligned_cols=32 Identities=38% Similarity=0.563 Sum_probs=29.5
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 49 dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
+|.|||.|-+|+++|..|.+.|++|++.|...
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~ 32 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKP 32 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCC
Confidence 47899999999999999999999999999754
No 494
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=77.31 E-value=3.2 Score=43.02 Aligned_cols=32 Identities=38% Similarity=0.498 Sum_probs=29.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCCC-cEEEEecC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGF-RVTVLEGR 79 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~-~V~VLEa~ 79 (722)
.+|+|||+|--|..+|..|+..|. +++|+|..
T Consensus 33 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 33 ARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 789999999999999999999997 69999873
No 495
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=77.22 E-value=5.4 Score=47.52 Aligned_cols=36 Identities=14% Similarity=0.208 Sum_probs=31.3
Q ss_pred CcEEEcccccccccCccchHHHHHHHHHHHHHHHHHhh
Q 004944 454 GRLFFAGEATIRRYPATMHGAFLSGLRETAKMAHCANA 491 (722)
Q Consensus 454 ~~L~fAGd~ts~~~~g~~eGAi~SG~~AA~~Il~~l~~ 491 (722)
++||.|||...+ +..+.-|+..|..||..|.+.|+.
T Consensus 618 ~gVfAaGD~~~g--~~~vv~Ai~~Gr~AA~~I~~~L~~ 653 (654)
T PRK12769 618 PKIFAGGDAVRG--ADLVVTAMAEGRHAAQGIIDWLGV 653 (654)
T ss_pred CCEEEcCCcCCC--CcHHHHHHHHHHHHHHHHHHHhCc
Confidence 899999999863 457789999999999999998864
No 496
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=77.15 E-value=3.5 Score=42.75 Aligned_cols=35 Identities=37% Similarity=0.497 Sum_probs=31.8
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCcEEEEecCCC
Q 004944 47 KLRVLVIGAGLAGLAAARQLMRLGFRVTVLEGRKR 81 (722)
Q Consensus 47 ~~dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~r 81 (722)
..+++|+|||.-+...|..+...|++|+|+|-++.
T Consensus 100 ~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 100 APHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 37899999999999999999999999999996543
No 497
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=76.86 E-value=3.5 Score=43.62 Aligned_cols=32 Identities=44% Similarity=0.555 Sum_probs=29.5
Q ss_pred CcEEEECccHHHHHHHHHHHHCCC-cEEEEecC
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGF-RVTVLEGR 79 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~-~V~VLEa~ 79 (722)
.+|+|||||=+|-++|+.|.+.|. +|+|+.++
T Consensus 126 k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt 158 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVYALASLGVTDITVINRN 158 (282)
T ss_pred ceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 679999999999999999999997 69999875
No 498
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=76.83 E-value=3.3 Score=44.23 Aligned_cols=32 Identities=31% Similarity=0.406 Sum_probs=30.0
Q ss_pred cEEEECccHHHHHHHHHHHHCCCcEEEEecCC
Q 004944 49 RVLVIGAGLAGLAAARQLMRLGFRVTVLEGRK 80 (722)
Q Consensus 49 dVvIVGAGiAGLsAA~~Lak~G~~V~VLEa~~ 80 (722)
+|.|||.|..|...|..|.++|++|++++++.
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~ 33 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNP 33 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCeEEEEECCH
Confidence 69999999999999999999999999998864
No 499
>PRK08328 hypothetical protein; Provisional
Probab=76.61 E-value=3.3 Score=42.42 Aligned_cols=31 Identities=29% Similarity=0.462 Sum_probs=28.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCCC-cEEEEec
Q 004944 48 LRVLVIGAGLAGLAAARQLMRLGF-RVTVLEG 78 (722)
Q Consensus 48 ~dVvIVGAGiAGLsAA~~Lak~G~-~V~VLEa 78 (722)
.+|+|||+|-.|..+|..|++.|. +++|+|.
T Consensus 28 ~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~ 59 (231)
T PRK08328 28 AKVAVVGVGGLGSPVAYYLAAAGVGRILLIDE 59 (231)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 779999999999999999999997 5888876
No 500
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=76.25 E-value=3.9 Score=38.31 Aligned_cols=31 Identities=35% Similarity=0.546 Sum_probs=28.6
Q ss_pred cEEEECccHHHHHHHHHHHHCCC-cEEEEecC
Q 004944 49 RVLVIGAGLAGLAAARQLMRLGF-RVTVLEGR 79 (722)
Q Consensus 49 dVvIVGAGiAGLsAA~~Lak~G~-~V~VLEa~ 79 (722)
+|+|||+|-.|...|..|++.|+ +++|+|..
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 48999999999999999999998 69999984
Done!