Query 004945
Match_columns 722
No_of_seqs 306 out of 1575
Neff 4.5
Searched_HMMs 46136
Date Thu Mar 28 15:30:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004945.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004945hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1845 MORC family ATPases [C 100.0 2.7E-59 5.9E-64 533.5 14.9 447 74-549 73-555 (775)
2 KOG1845 MORC family ATPases [C 99.9 1.1E-22 2.5E-27 234.0 2.1 284 189-530 1-293 (775)
3 PRK05218 heat shock protein 90 99.7 5.1E-17 1.1E-21 186.5 13.4 113 125-248 7-144 (613)
4 PF13589 HATPase_c_3: Histidin 99.7 6.5E-18 1.4E-22 158.9 4.3 93 153-249 3-97 (137)
5 COG0326 HtpG Molecular chapero 99.7 2.7E-16 5.9E-21 178.3 14.8 114 125-249 8-145 (623)
6 PRK14083 HSP90 family protein; 99.6 6.4E-15 1.4E-19 168.8 12.4 112 125-248 4-129 (601)
7 PTZ00130 heat shock protein 90 99.5 2.2E-14 4.8E-19 167.5 4.8 114 125-249 69-206 (814)
8 PTZ00272 heat shock protein 83 99.4 9.1E-14 2E-18 161.5 6.1 113 125-248 6-141 (701)
9 PRK00095 mutL DNA mismatch rep 99.3 2.2E-11 4.7E-16 140.6 15.7 92 149-248 19-116 (617)
10 COG0323 MutL DNA mismatch repa 99.3 5.7E-12 1.2E-16 145.8 10.3 92 149-248 20-117 (638)
11 TIGR00585 mutl DNA mismatch re 99.3 2.7E-11 5.8E-16 128.7 13.4 90 149-246 19-114 (312)
12 KOG0019 Molecular chaperone (H 99.1 5E-11 1.1E-15 134.4 4.6 115 124-249 37-173 (656)
13 KOG0020 Endoplasmic reticulum 99.0 8.7E-11 1.9E-15 129.7 2.2 113 126-249 77-217 (785)
14 COG1389 DNA topoisomerase VI, 98.9 4.2E-09 9.2E-14 116.3 8.8 97 151-248 35-139 (538)
15 KOG1979 DNA mismatch repair pr 98.6 7.8E-08 1.7E-12 108.7 8.3 157 149-314 24-188 (694)
16 PRK05559 DNA topoisomerase IV 98.5 1.2E-07 2.6E-12 110.3 5.9 122 115-248 5-140 (631)
17 PRK04184 DNA topoisomerase VI 98.3 1.1E-06 2.3E-11 100.6 8.2 97 152-248 36-141 (535)
18 TIGR01052 top6b DNA topoisomer 98.3 1.3E-06 2.8E-11 98.9 8.7 98 150-248 26-131 (488)
19 TIGR01055 parE_Gneg DNA topois 98.3 6.9E-07 1.5E-11 103.9 5.6 108 131-249 13-134 (625)
20 PRK14868 DNA topoisomerase VI 98.3 1.4E-06 3E-11 102.4 7.9 96 151-248 45-148 (795)
21 PF02518 HATPase_c: Histidine 98.3 1.9E-06 4.1E-11 76.7 6.5 91 153-247 6-99 (111)
22 PRK05644 gyrB DNA gyrase subun 98.2 1.7E-06 3.6E-11 101.0 5.9 122 115-248 5-140 (638)
23 KOG1978 DNA mismatch repair pr 98.1 2.1E-06 4.6E-11 98.9 5.2 92 149-248 17-114 (672)
24 TIGR01059 gyrB DNA gyrase, B s 98.0 4.6E-06 1E-10 97.6 5.7 110 131-248 10-133 (654)
25 PRK14867 DNA topoisomerase VI 98.0 1.2E-05 2.6E-10 93.8 8.5 94 153-247 37-138 (659)
26 PRK14939 gyrB DNA gyrase subun 98.0 8.1E-06 1.8E-10 96.8 6.3 122 116-249 5-141 (756)
27 smart00433 TOP2c Topoisomerase 97.9 8.1E-06 1.7E-10 94.7 4.0 88 156-249 5-105 (594)
28 COG0187 GyrB Type IIA topoisom 97.7 6.4E-05 1.4E-09 86.8 8.1 112 131-249 15-140 (635)
29 KOG1977 DNA mismatch repair pr 97.7 2.9E-05 6.4E-10 89.8 5.2 89 151-248 20-114 (1142)
30 COG3290 CitA Signal transducti 97.6 0.00015 3.3E-09 82.7 7.7 93 149-246 424-519 (537)
31 cd00075 HATPase_c Histidine ki 97.5 0.00031 6.7E-09 58.3 7.2 89 154-246 2-93 (103)
32 PLN03237 DNA topoisomerase 2; 97.4 0.00049 1.1E-08 86.1 10.2 87 154-245 79-179 (1465)
33 smart00387 HATPase_c Histidine 97.4 0.00041 8.9E-09 58.6 6.5 89 153-245 6-97 (111)
34 PRK10604 sensor protein RstB; 97.3 0.00069 1.5E-08 74.6 8.5 91 152-247 319-412 (433)
35 TIGR01058 parE_Gpos DNA topois 97.2 0.00036 7.8E-09 81.9 5.1 120 117-248 4-137 (637)
36 PRK09470 cpxA two-component se 97.2 0.00094 2E-08 72.4 7.9 91 152-247 353-446 (461)
37 TIGR01386 cztS_silS_copS heavy 97.1 0.0011 2.4E-08 71.4 8.0 91 151-244 352-445 (457)
38 PRK11006 phoR phosphate regulo 97.1 0.001 2.3E-08 72.7 7.8 93 151-246 316-411 (430)
39 COG0642 BaeS Signal transducti 97.0 0.00093 2E-08 66.5 5.8 88 151-246 227-317 (336)
40 PRK10549 signal transduction h 97.0 0.0016 3.4E-08 71.0 7.9 93 152-247 352-447 (466)
41 TIGR02966 phoR_proteo phosphat 97.0 0.0019 4.1E-08 65.9 7.8 93 151-246 228-323 (333)
42 PRK09303 adaptive-response sen 96.9 0.0026 5.6E-08 69.3 8.5 92 152-247 272-366 (380)
43 PRK10755 sensor protein BasS/P 96.9 0.0018 3.9E-08 68.6 6.7 91 150-247 245-338 (356)
44 PRK10364 sensor protein ZraS; 96.9 0.0023 4.9E-08 70.5 7.5 87 151-246 347-436 (457)
45 PRK09467 envZ osmolarity senso 96.9 0.0028 6.2E-08 68.5 8.0 89 152-247 331-422 (435)
46 PRK15053 dpiB sensor histidine 96.8 0.0033 7.1E-08 70.5 8.1 90 152-246 432-527 (545)
47 PRK11100 sensory histidine kin 96.8 0.0033 7.1E-08 68.0 7.5 92 151-246 367-461 (475)
48 TIGR02916 PEP_his_kin putative 96.7 0.0033 7.1E-08 73.6 7.0 85 153-246 580-668 (679)
49 TIGR02938 nifL_nitrog nitrogen 96.6 0.0053 1.1E-07 66.2 8.1 91 153-246 388-482 (494)
50 TIGR03785 marine_sort_HK prote 96.5 0.0056 1.2E-07 72.5 7.7 93 152-247 597-692 (703)
51 PRK11086 sensory histidine kin 96.5 0.0072 1.6E-07 67.0 7.9 87 152-246 433-523 (542)
52 PTZ00108 DNA topoisomerase 2-l 96.4 0.0041 8.9E-08 78.2 6.3 89 154-247 59-164 (1388)
53 PRK13837 two-component VirA-li 96.4 0.0086 1.9E-07 71.8 8.4 89 151-246 559-663 (828)
54 PRK09835 sensor kinase CusS; P 96.4 0.0085 1.8E-07 65.5 7.7 91 152-245 375-468 (482)
55 PRK10815 sensor protein PhoQ; 96.4 0.0095 2E-07 67.4 8.1 86 153-247 379-467 (485)
56 PRK11360 sensory histidine kin 96.3 0.0074 1.6E-07 66.6 7.0 87 152-246 500-589 (607)
57 PTZ00109 DNA gyrase subunit b; 96.3 0.0027 5.8E-08 76.6 3.2 121 117-249 99-273 (903)
58 PRK11073 glnL nitrogen regulat 96.3 0.012 2.6E-07 61.8 7.7 89 152-246 237-336 (348)
59 PRK10337 sensor protein QseC; 96.2 0.012 2.6E-07 64.1 7.5 85 152-246 352-439 (449)
60 PHA02569 39 DNA topoisomerase 95.9 0.0065 1.4E-07 71.2 4.1 84 157-247 50-151 (602)
61 PRK15347 two component system 95.9 0.018 4E-07 68.6 8.0 88 151-246 512-602 (921)
62 PRK11091 aerobic respiration c 95.8 0.022 4.8E-07 67.3 8.1 93 151-246 397-493 (779)
63 PRK11466 hybrid sensory histid 95.8 0.026 5.6E-07 67.6 8.4 89 151-247 560-651 (914)
64 PRK11107 hybrid sensory histid 95.7 0.024 5.3E-07 67.5 8.0 94 152-247 408-507 (919)
65 COG4191 Signal transduction hi 95.7 0.018 4E-07 66.8 6.3 62 152-215 497-559 (603)
66 TIGR02956 TMAO_torS TMAO reduc 95.6 0.032 6.9E-07 67.1 8.1 90 151-246 578-671 (968)
67 PLN03128 DNA topoisomerase 2; 95.5 0.018 3.8E-07 71.8 6.0 87 154-245 54-154 (1135)
68 PRK10841 hybrid sensory kinase 95.5 0.037 8E-07 67.7 8.5 92 151-246 561-655 (924)
69 PRK10490 sensor protein KdpD; 95.5 0.031 6.7E-07 68.2 7.7 92 151-247 777-871 (895)
70 PRK10618 phosphotransfer inter 95.4 0.047 1E-06 66.8 8.8 94 151-247 564-661 (894)
71 PRK04069 serine-protein kinase 95.2 0.029 6.3E-07 54.6 5.3 87 153-244 43-131 (161)
72 TIGR01925 spIIAB anti-sigma F 95.2 0.067 1.4E-06 49.7 7.4 85 153-246 40-126 (137)
73 PRK10547 chemotaxis protein Ch 95.1 0.081 1.8E-06 63.0 9.5 90 154-246 387-511 (670)
74 TIGR01924 rsbW_low_gc serine-p 95.0 0.05 1.1E-06 53.1 6.1 87 153-244 43-131 (159)
75 PRK13557 histidine kinase; Pro 94.9 0.077 1.7E-06 58.5 8.0 90 152-246 277-382 (540)
76 PRK09959 hybrid sensory histid 94.8 0.073 1.6E-06 65.9 8.4 92 151-246 827-924 (1197)
77 COG4585 Signal transduction hi 94.4 0.06 1.3E-06 58.3 5.7 76 150-246 277-353 (365)
78 PF13581 HATPase_c_2: Histidin 94.1 0.11 2.3E-06 47.5 5.7 81 152-242 31-113 (125)
79 PRK03660 anti-sigma F factor; 93.9 0.23 5.1E-06 46.4 7.7 85 153-246 40-126 (146)
80 COG0643 CheA Chemotaxis protei 92.5 0.37 7.9E-06 58.0 8.4 92 155-247 435-562 (716)
81 KOG0787 Dehydrogenase kinase [ 92.4 0.33 7.1E-06 54.2 7.1 90 155-246 263-368 (414)
82 COG2205 KdpD Osmosensitive K+ 92.3 0.26 5.6E-06 59.6 6.7 88 153-246 776-867 (890)
83 PRK11644 sensory histidine kin 92.1 0.2 4.3E-06 57.2 5.3 70 152-244 410-482 (495)
84 PRK10600 nitrate/nitrite senso 92.0 0.2 4.3E-06 57.4 5.1 75 151-247 468-545 (569)
85 COG2972 Predicted signal trans 91.6 0.18 3.9E-06 56.9 4.2 82 156-247 354-441 (456)
86 COG4192 Signal transduction hi 91.0 0.47 1E-05 54.4 6.5 65 151-216 563-627 (673)
87 PRK13560 hypothetical protein; 90.1 0.5 1.1E-05 55.0 6.2 75 154-245 713-792 (807)
88 COG5000 NtrY Signal transducti 89.0 0.61 1.3E-05 55.0 5.5 58 153-210 601-662 (712)
89 COG3850 NarQ Signal transducti 88.5 0.6 1.3E-05 54.2 5.1 75 154-248 483-558 (574)
90 COG3920 Signal transduction hi 88.1 0.76 1.7E-05 47.6 5.1 59 142-202 114-174 (221)
91 COG2172 RsbW Anti-sigma regula 87.8 1.7 3.6E-05 42.6 7.0 87 151-246 39-128 (146)
92 PRK10935 nitrate/nitrite senso 85.1 1.2 2.6E-05 50.2 5.2 74 153-247 472-548 (565)
93 PRK13559 hypothetical protein; 83.0 1.9 4.1E-05 45.8 5.3 75 153-246 268-348 (361)
94 COG5002 VicK Signal transducti 82.7 1.4 3.1E-05 49.2 4.3 75 153-231 343-418 (459)
95 COG3851 UhpB Signal transducti 80.5 2.3 4.9E-05 47.8 4.8 64 135-202 393-456 (497)
96 COG4251 Bacteriophytochrome (l 76.3 4.1 8.9E-05 48.6 5.5 65 143-209 627-691 (750)
97 COG3852 NtrB Signal transducti 61.8 13 0.00029 41.2 5.3 75 152-232 241-326 (363)
98 COG4564 Signal transduction hi 44.3 38 0.00082 38.2 5.3 79 152-248 355-438 (459)
99 COG3275 LytS Putative regulato 34.7 31 0.00066 40.4 2.9 44 157-202 461-507 (557)
100 PF14501 HATPase_c_5: GHKL dom 30.7 89 0.0019 27.8 4.7 44 153-198 6-51 (100)
101 KOG0355 DNA topoisomerase type 30.1 66 0.0014 39.8 4.7 49 153-204 54-102 (842)
102 COG2865 Predicted transcriptio 22.0 96 0.0021 36.2 4.0 68 152-230 270-351 (467)
103 KOG2183 Prolylcarboxypeptidase 20.4 34 0.00074 39.5 0.0 14 78-91 288-301 (492)
No 1
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2.7e-59 Score=533.46 Aligned_cols=447 Identities=51% Similarity=0.776 Sum_probs=393.7
Q ss_pred cccccCCCCcCCCCCCCCCCCCCCCCccccccchhhhhhhcccCCCCCCCCCccccCCCcceeeecchhhhcccccccCH
Q 004945 74 LEVVLPVGFLEPLPAPERLPAAAGNDKAVSVGLQSCKQFWKAGDYEGAPSGGWEFSTGGMDHVRVHPKFLHSNATSHKWA 153 (722)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fwkag~y~~~~~~~~~~~~~~~~~~~v~p~fLhSnstsh~~~ 153 (722)
-++++|---+.|-++++.++ .. ++++..-.||||||||+|..++..+.....++.+|+.+||+|||+|+|+|+|.
T Consensus 73 ~~vvvP~~t~~~~~~~~~~~----k~-~~~l~~~~c~sfwKag~~~~a~~~~~~~~~G~~~~iivhpkflhsnatshk~a 147 (775)
T KOG1845|consen 73 DAVVVPCPTFNPRTREIVTE----KF-AFSLEAIYCRSFWKAGDYLLAELDVIIGKSGGTLHIIVHPKFLHSNATSHKWA 147 (775)
T ss_pred ccceeccccccccccccccc----cc-ccccchhhhcCcccccchhcccccceeccCCceeEEEEehhhhcCCCcccccc
Confidence 34456655555544444331 22 44677889999999999999999888888899999999999999999999999
Q ss_pred HHHHHHhhhcchhhhhcCCceeEEEEEEccCCC-ceeEEEE-----EcCCCCCHHHHHhhhhccccccccCCcccCcccc
Q 004945 154 LGAFAELLDNSLDEVCNGATYSNIDMLINRKDG-SRMLLIE-----DNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGN 227 (722)
Q Consensus 154 fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g-~~~I~I~-----DNG~GMs~eeL~~~l~~G~SsK~r~~~~IGrfGv 227 (722)
++|++||||||+|.+.++|+.+.|+.+....+. ...++|. |||+||.++-+..||.+|++.|.....++|+||+
T Consensus 148 ~~a~aeLldnalDEi~~~~tf~~vd~I~p~~d~~i~a~~v~~~~~s~~gg~~~~~~i~~~m~l~~~~k~e~~~tv~q~~~ 227 (775)
T KOG1845|consen 148 KGAIAELLDNALDEITNGATFVRVDYINPVMDIFIRALVVQLKRISDDGGGMKPEVIRKCMSLGYSSKKEANSTVGQYGN 227 (775)
T ss_pred cChhhhhccccccccccccceEEeeeecccccccceeEEeeccceeccccccCHHHHHHHHHhhhhhhhhhhhhhhhhcc
Confidence 999999999999999999999988876554443 5556666 7799999999999999999998766789999999
Q ss_pred cccccccccCCeEEEEeeecCCCCCCCceeEeeechhhcccCCCcceeeec----ccccchhhHHHHHhhccchhhhhhh
Q 004945 228 GFKTSTMRLGADVIVFSCCCGKDGKSPTRSIGLLSYTFLRSTGKEDIVVPM----LDYEGSQQEWKKIIRSSLDDWNRNV 303 (722)
Q Consensus 228 GfKsAsmrLG~~v~V~SR~~g~~G~~~t~SiglLS~Tfl~~~~~ddIvVPm----~dye~~~~~w~~~i~~~~~dw~~nL 303 (722)
|||++.|++|.+++|++|..+.+|.+.+++||+|||+||+.++.++++||| .+|+...+.|..+++.+..+|..|+
T Consensus 228 gfktst~rlGa~~i~~~R~~~~~~~kstqsiglls~tfL~~t~~~d~iv~~~~i~~~~e~~~~~~~~i~~~s~~~~~~n~ 307 (775)
T KOG1845|consen 228 GFKTSTMRLGADAIVFSRCESRRGLKSTQSIGLLSYTFLRKTGKRDFIVPMRLIKMDYEKSDQLWQGILYKSGVDWAVNL 307 (775)
T ss_pred ccccchhhhccceeEeehhhhhccCCcceeEEEEEEeeeccccCCceeEecchhhhhhhcccccccceeeccccccceee
Confidence 999999999999999999877788999999999999999999999999999 9999988999999888899999999
Q ss_pred Hh-----hhccCCCCChHHHHHH---------------hhccCCCeeEEEEecc--ccccCCceeecCCCCcccccccCC
Q 004945 304 ET-----IVQWSPFSSEADLLHQ---------------FNLMKDHGTRIIIYNL--WEDDQGLLELDFDSDKHDIQLRGV 361 (722)
Q Consensus 304 ~~-----Il~ySPf~sE~eLl~q---------------f~~Ig~~GT~III~NL--w~~~dG~~ELDFdtD~~DI~i~g~ 361 (722)
.+ +++|+||.++.+++.| ++.+..+||.||+||+ |+++.|.+|+||+.+.++|..
T Consensus 308 ~i~~~~~~L~w~p~~~~~~~l~q~~v~~~~~~~ef~~~~~~~~~~g~~~I~Y~~~~~~~~~g~~e~df~l~~~~i~~--- 384 (775)
T KOG1845|consen 308 EIEVTERFLKWSPYSHLLDLLGQNSVQYSKDFPEFGHQFNIMNKPGTDVIIYNLRRWKGDEGILELDFDLDPHVIPW--- 384 (775)
T ss_pred eeHHHHHHhhcCccccHHHHhhhhhhhhccccchhcchhhhccCCCceeeeechhhhcccccceeeccccCcccccc---
Confidence 98 9999999999999988 8888999999999999 999999999999999887741
Q ss_pred CchhhhhhhhccCCCCchhhhhHHHHHHHHHHHhhcCCCceEEEEcCeeeccccccccccccccccCcCCCCCCCCCCCc
Q 004945 362 NRDEQNIKMAQHYPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLSKKVTYRPQPGASGIPTDL 441 (722)
Q Consensus 362 ~~d~k~~q~ak~~p~~~~~~~~~~SLRaYLSILYLr~pprfkI~LnGk~Vep~~i~~dl~~~e~~~YkP~~~~~~lP~~~ 441 (722)
.+.++++.|.++||.+++.+|++++.|+++.|+.+..+.+..+...|+|+......+ ..
T Consensus 385 --------------------~~~~~~~s~~sil~~~~~~~~~~v~~~~~~~h~sv~~~q~~~~~~~~~p~r~~~~~~-~~ 443 (775)
T KOG1845|consen 385 --------------------TYCHSHLSEASILLLTRRLRFKSVLRGKDVEHHSVINYQVQTEEILYQPQRAPADGK-QR 443 (775)
T ss_pred --------------------cchhhhhhcccccchhccccchhccccccchhhhHHHHHHHHHHHhcccccccCCcc-ch
Confidence 345788999999999999999999999999999999999888888999985432211 11
Q ss_pred cceeeEEeecccCcccccccCceEEEecCccch----hhhcccccCCCCCcceeeeeeccccCCCCcccchhhHHHHHHH
Q 004945 442 HMAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIK----PFWRLWNASGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARL 517 (722)
Q Consensus 442 ~~~~~itiGfl~~~~~~~~~qGf~VYh~nRLIk----~f~~Vw~~~~s~GrGVIGVleanflePtHnKQdFe~t~~l~rL 517 (722)
.+......||.+..++++++++|+|||++|||. +||+.|+..++.++++++++.+||.+|+|++|+|+.+...++.
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~nV~~~~~lie~~~~~~~k~~n~~~s~~~~~~~il~~n~~~~a~~~~~v~~~~v~a~~ 523 (775)
T KOG1845|consen 444 LIKLSPKPGFVKDAPRPIDVQQFNVSHGPRLIEHGCRPFVKIDNATGSLGQAVIPILVGNFVETAPDSQGVEKTIVLASS 523 (775)
T ss_pred hhcccCCCCcccccCCCCCccCCccccCCcchhhcccceeeecCCCccccccccceecccccccCCCccccccccccccc
Confidence 334455788999888999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccccccccCcccccccc
Q 004945 518 EARLIQMQKDYWNNNCHEIGYAPRRYKKYIKD 549 (722)
Q Consensus 518 ~~~L~~~ld~YW~~~~~kiGy~~~~~~~~~~~ 549 (722)
+..+.++++.||...|++|+|.........+.
T Consensus 524 es~~~~~~~~~~~~~~~~i~~~~~q~~~~~~~ 555 (775)
T KOG1845|consen 524 ESRDKQSLNTYEEKKCLRIDEAGRQLQKERES 555 (775)
T ss_pred hhhhhhcccccccccccccCccchhhhhhhcc
Confidence 99999999999999999999998776665544
No 2
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=1.1e-22 Score=234.02 Aligned_cols=284 Identities=24% Similarity=0.318 Sum_probs=214.2
Q ss_pred eEEEEEcCCCCCHHHHHhhhhccccccccCCcccCcccccccccccccCCeEEEEeeecCCCCCCCceeEeeechhhccc
Q 004945 189 MLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTSTMRLGADVIVFSCCCGKDGKSPTRSIGLLSYTFLRS 268 (722)
Q Consensus 189 ~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~~IGrfGvGfKsAsmrLG~~v~V~SR~~g~~G~~~t~SiglLS~Tfl~~ 268 (722)
++++.|||.||+++++..+..|+. ....+|+||+|+|+++|++|+++.++|+..+ +++++++|+||++.
T Consensus 1 ~l~~~Ddg~Gms~d~a~~~~~f~~-----~~~~ig~ygnG~ksgs~r~gkd~~~~tk~~~------~~s~~~~sqt~~e~ 69 (775)
T KOG1845|consen 1 MLCFLDDGLGMSPDEAPKAINFAV-----GLYGIGDYGNGLKSGSMRIGKDFILFTKKES------TMSCLFLSQTFHES 69 (775)
T ss_pred CcccccCCCCcCchhhhhhhhhcc-----cccccccccCcccccccccCcccceeecccc------ccceeeeecccccc
Confidence 578999999999999999998843 3458999999999999999999999999764 58999999999999
Q ss_pred CCCcceeeecccccchhhHHHHHhhccchhhhhhhHhhhccCCCCChHHHHHHhhcc-CCCe-eEEEEeccccccCCcee
Q 004945 269 TGKEDIVVPMLDYEGSQQEWKKIIRSSLDDWNRNVETIVQWSPFSSEADLLHQFNLM-KDHG-TRIIIYNLWEDDQGLLE 346 (722)
Q Consensus 269 ~~~ddIvVPm~dye~~~~~w~~~i~~~~~dw~~nL~~Il~ySPf~sE~eLl~qf~~I-g~~G-T~III~NLw~~~dG~~E 346 (722)
...+.++||++.|+..+..-. .+.+..++++|+.+|+|..++.++.+++.+ +..| |.+||+|+.+-..|.++
T Consensus 70 ~~~~~vvvP~~t~~~~~~~~~------~~k~~~~l~~~~c~sfwKag~~~~a~~~~~~~~~G~~~~iivhpkflhsnats 143 (775)
T KOG1845|consen 70 EADDAVVVPCPTFNPRTREIV------TEKFAFSLEAIYCRSFWKAGDYLLAELDVIIGKSGGTLHIIVHPKFLHSNATS 143 (775)
T ss_pred cccccceeccccccccccccc------ccccccccchhhhcCcccccchhcccccceeccCCceeEEEEehhhhcCCCcc
Confidence 999999999999986554321 266788899999999999999999999988 5655 99999999999999999
Q ss_pred ecCCCCcccccccCCCchhhhhhhhccCCCCchhhhhHHHHHHHHHHHhhcCCCceEEEEcCeeeccccccccccccccc
Q 004945 347 LDFDSDKHDIQLRGVNRDEQNIKMAQHYPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLSKKV 426 (722)
Q Consensus 347 LDFdtD~~DI~i~g~~~d~k~~q~ak~~p~~~~~~~~~~SLRaYLSILYLr~pprfkI~LnGk~Vep~~i~~dl~~~e~~ 426 (722)
+||..|+.||+|.++..+ +++ =+.|+.++|+. |.|+|++++..|++.+++.+.-
T Consensus 144 hk~a~~a~aeLldnalDE---------i~~----------~~tf~~vd~I~--p~~d~~i~a~~v~~~~~s~~gg----- 197 (775)
T KOG1845|consen 144 HKWAKGAIAELLDNALDE---------ITN----------GATFVRVDYIN--PVMDIFIRALVVQLKRISDDGG----- 197 (775)
T ss_pred cccccChhhhhccccccc---------ccc----------ccceEEeeeec--ccccccceeEEeeccceecccc-----
Confidence 999999999998765422 111 12458899988 9999999999999987654421
Q ss_pred cCcCCCC----CCCC--CCCcc-ceeeEEeecccCcccccccCceEEEecCccchhhhcccccCCCCCcceeeeeecccc
Q 004945 427 TYRPQPG----ASGI--PTDLH-MAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNASGSDGRGVIGVLEANFV 499 (722)
Q Consensus 427 ~YkP~~~----~~~l--P~~~~-~~~~itiGfl~~~~~~~~~qGf~VYh~nRLIk~f~~Vw~~~~s~GrGVIGVleanfl 499 (722)
..+|+.. ..+. ....+ ...+...||.+... --|-.+|+-.|.-. ..+.++.+.||+|..+||
T Consensus 198 ~~~~~~i~~~m~l~~~~k~e~~~tv~q~~~gfktst~----rlGa~~i~~~R~~~-------~~~~kstqsiglls~tfL 266 (775)
T KOG1845|consen 198 GMKPEVIRKCMSLGYSSKKEANSTVGQYGNGFKTSTM----RLGADAIVFSRCES-------RRGLKSTQSIGLLSYTFL 266 (775)
T ss_pred ccCHHHHHHHHHhhhhhhhhhhhhhhhhccccccchh----hhccceeEeehhhh-------hccCCcceeEEEEEEeee
Confidence 1111110 0000 00111 12233455554432 25888888888722 334556799999999999
Q ss_pred CCCCcccchhhHHHHHHHHHHHHHHHHHHHh
Q 004945 500 EPAHDKQGFERTTVLARLEARLIQMQKDYWN 530 (722)
Q Consensus 500 ePtHnKQdFe~t~~l~rL~~~L~~~ld~YW~ 530 (722)
++|+ |+||-... ++..-..+..+.+|.
T Consensus 267 ~~t~-~~d~iv~~---~~i~~~~e~~~~~~~ 293 (775)
T KOG1845|consen 267 RKTG-KRDFIVPM---RLIKMDYEKSDQLWQ 293 (775)
T ss_pred cccc-CCceeEec---chhhhhhhccccccc
Confidence 9999 99998877 444444444455554
No 3
>PRK05218 heat shock protein 90; Provisional
Probab=99.71 E-value=5.1e-17 Score=186.49 Aligned_cols=113 Identities=26% Similarity=0.414 Sum_probs=86.3
Q ss_pred CccccCCCcceeeecchhhhcccccccCHHHHHHHhhhcchhhhhc-------------CCceeEEEEEEccCCCceeEE
Q 004945 125 GWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCN-------------GATYSNIDMLINRKDGSRMLL 191 (722)
Q Consensus 125 ~~~~~~~~~~~~~v~p~fLhSnstsh~~~fsAIAELIDNSiDA~~~-------------gAt~V~IdI~~~~~~g~~~I~ 191 (722)
.|+++..++..+.+|.-| ++.. .+|+|||+||+||+.. ++....|.|..+. +...|.
T Consensus 7 ~Fq~e~~~ll~ll~~~LY------s~~~--v~lRELiqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~--~~~~i~ 76 (613)
T PRK05218 7 EFQAEVKQLLHLMIHSLY------SNKE--IFLRELISNASDAIDKLRFEALTDPALYEGDGDLKIRISFDK--EARTLT 76 (613)
T ss_pred ehhHhHHHHHHHHhhhhc------CCch--HHHHHHHhCHHHHHHHHHHHhccCccccCCCCCcEEEEEEcC--CCCeEE
Confidence 377888888888887766 4444 5699999999999752 3445677776654 344699
Q ss_pred EEEcCCCCCHHHHHhhh-hccccccc-----------cCCcccCcccccccccccccCCeEEEEeeecC
Q 004945 192 IEDNGGGMNPDKMRHCM-SLGYSAKS-----------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (722)
Q Consensus 192 I~DNG~GMs~eeL~~~l-~~G~SsK~-----------r~~~~IGrfGvGfKsAsmrLG~~v~V~SR~~g 248 (722)
|.|||+||+.++|.+++ .+|+|.+. .+...||+||+||++++ .+|++|+|.||+.+
T Consensus 77 I~DnG~GMt~eel~~~l~~ia~Sg~~~f~~k~~~~~~~~~~~iG~fGiGf~S~f-~va~~v~V~Sr~~~ 144 (613)
T PRK05218 77 ISDNGIGMTREEVIENLGTIAKSGTKEFLEKLKGDQKKDSQLIGQFGVGFYSAF-MVADKVTVITRSAG 144 (613)
T ss_pred EEECCCCCCHHHHHHHHHhhccccchhHHHHhhcccccccccccccCcCchhhh-hccCEEEEEEcCCC
Confidence 99999999999999876 58877421 13467999999998754 59999999999865
No 4
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=99.70 E-value=6.5e-18 Score=158.95 Aligned_cols=93 Identities=37% Similarity=0.607 Sum_probs=79.1
Q ss_pred HHHHHHHhhhcchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhcccccccc--CCcccCccccccc
Q 004945 153 ALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSK--AANTIGQYGNGFK 230 (722)
Q Consensus 153 ~fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r--~~~~IGrfGvGfK 230 (722)
++.||+|||+||+|| .|+.|.|.|.... .+...|.|.|||.||++++|..++.+|.+++.. ....+|+||+|+|
T Consensus 3 ~~~al~ElI~Ns~DA---~a~~I~I~i~~~~-~~~~~i~I~DnG~Gm~~~~l~~~~~~g~s~k~~~~~~~~~G~~G~G~k 78 (137)
T PF13589_consen 3 PEDALRELIDNSIDA---GATNIKISIDEDK-KGERYIVIEDNGEGMSREDLESFFRIGRSSKKSEKDRQSIGRFGIGLK 78 (137)
T ss_dssp CTHHHHHHHHHHHHH---HHHHEEEEEEEET-TTTTEEEEEESSS---HHHHHHHTTCHHTHHHHHHHGGGGGGGTSGCG
T ss_pred HHHHHHHHHHHHHHc---cCCEEEEEEEcCC-CCCcEEEEEECCcCCCHHHHHHhccccCCCCCchhhhhcCCCcceEHH
Confidence 468999999999999 6888888887653 456899999999999999999999999998752 4678999999999
Q ss_pred ccccccCCeEEEEeeecCC
Q 004945 231 TSTMRLGADVIVFSCCCGK 249 (722)
Q Consensus 231 sAsmrLG~~v~V~SR~~g~ 249 (722)
.|.+++|+.+.|+|++.+.
T Consensus 79 ~A~~~~~~~~~v~S~~~~~ 97 (137)
T PF13589_consen 79 LAIFSLGDRVEVISKTNGE 97 (137)
T ss_dssp GGGGGTEEEEEEEEESTTS
T ss_pred HHHHHhcCEEEEEEEECCC
Confidence 9999999999999999764
No 5
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=2.7e-16 Score=178.27 Aligned_cols=114 Identities=25% Similarity=0.438 Sum_probs=96.4
Q ss_pred CccccCCCcceeeecchhhhcccccccCHHHHHHHhhhcchhhhhcC-------------CceeEEEEEEccCCCceeEE
Q 004945 125 GWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNG-------------ATYSNIDMLINRKDGSRMLL 191 (722)
Q Consensus 125 ~~~~~~~~~~~~~v~p~fLhSnstsh~~~fsAIAELIDNSiDA~~~g-------------At~V~IdI~~~~~~g~~~I~ 191 (722)
.|+++++++.++.+|.-| |++.+| |+|||.||.||++.- ...++|.|..++ .+.+|+
T Consensus 8 ~Fq~ev~~ll~lmihSlY------SnKeIF--LRELISNAsDAidKlr~~al~~~~~~~~~~~~~I~i~~Dk--~~kTLt 77 (623)
T COG0326 8 GFQAEVKQLLDLMIHSLY------SNKEIF--LRELISNASDAIDKLRFEALSDPELGEGDSDLRIRISFDK--DNKTLT 77 (623)
T ss_pred hhhHHHHHHHHHHHHhcc------CCcHHH--HHHHHhhhHHHHHHHHHHhccCccccCCCCCceEEEEEcc--cCCEEE
Confidence 488999999999999999 889998 999999999998621 225778887765 568999
Q ss_pred EEEcCCCCCHHHHHhhhh-ccccccc----------cCCcccCcccccccccccccCCeEEEEeeecCC
Q 004945 192 IEDNGGGMNPDKMRHCMS-LGYSAKS----------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCGK 249 (722)
Q Consensus 192 I~DNG~GMs~eeL~~~l~-~G~SsK~----------r~~~~IGrfGvGfKsAsmrLG~~v~V~SR~~g~ 249 (722)
|.|||+||+++|+.+.|. ++.|... ++...|||||+||++|+| ++++|+|.||+.+.
T Consensus 78 I~DNGIGMT~~Ev~~~LgTIAkSgT~~F~~~l~~~~~~~~lIGQFGVGFYSaFm-VAdkV~V~T~~~~~ 145 (623)
T COG0326 78 ISDNGIGMTKDEVIENLGTIAKSGTKEFLESLSEDQKDSDLIGQFGVGFYSAFM-VADKVTVITRSAGE 145 (623)
T ss_pred EEeCCCCCCHHHHHHHHHHhhhccHHHHHHHhccccccccccccccchhhheee-eeeeEEEEeccCCC
Confidence 999999999999999875 7666432 234569999999999999 99999999999874
No 6
>PRK14083 HSP90 family protein; Provisional
Probab=99.58 E-value=6.4e-15 Score=168.81 Aligned_cols=112 Identities=21% Similarity=0.417 Sum_probs=84.5
Q ss_pred CccccCCCcceeeecchhhhcccccccCHHHHHHHhhhcchhhhhcC-------CceeEEEEEEccCCCceeEEEEEcCC
Q 004945 125 GWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNG-------ATYSNIDMLINRKDGSRMLLIEDNGG 197 (722)
Q Consensus 125 ~~~~~~~~~~~~~v~p~fLhSnstsh~~~fsAIAELIDNSiDA~~~g-------At~V~IdI~~~~~~g~~~I~I~DNG~ 197 (722)
.|+++..++.++..+.-| ++ +..+|+|||.||+||+... ...|.|.+. + .+...|.|.|||.
T Consensus 4 ~Fqae~~~ll~ll~~~LY------s~--~~iflrELiqNA~DA~~~~~~~~~~~~~~I~I~~~-d--~~~~~l~I~DnGi 72 (601)
T PRK14083 4 RFQVDLRGVIDLLSRHLY------SS--PRVYVRELLQNAVDAITARRALDPTAPGRIRIELT-D--AGGGTLIVEDNGI 72 (601)
T ss_pred cchHhHHHHHHHHHHhhc------CC--cHHHHHHHHHhHHHHHHhhhccCCCCCceEEEEEc-c--CCCcEEEEEeCCC
Confidence 477777777777666555 33 4567999999999997521 114444442 3 3567899999999
Q ss_pred CCCHHHHHhhh-hcccccccc------CCcccCcccccccccccccCCeEEEEeeecC
Q 004945 198 GMNPDKMRHCM-SLGYSAKSK------AANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (722)
Q Consensus 198 GMs~eeL~~~l-~~G~SsK~r------~~~~IGrfGvGfKsAsmrLG~~v~V~SR~~g 248 (722)
||+.+++.+.+ .+|.|.|.. ....||+||+||++++| +|+++.|.||..+
T Consensus 73 Gmt~eel~~~l~~ig~S~k~~~~~~~~~~~~IG~FGIGf~S~F~-vad~v~V~Tr~~~ 129 (601)
T PRK14083 73 GLTEEEVHEFLATIGRSSKRDENLGFARNDFLGQFGIGLLSCFL-VADEIVVVSRSAK 129 (601)
T ss_pred CCCHHHHHHHHhhhccchhhhhhhcccccccccccccceEEEEE-ecCEEEEEeccCC
Confidence 99999999864 699888743 23579999999998776 9999999999863
No 7
>PTZ00130 heat shock protein 90; Provisional
Probab=99.47 E-value=2.2e-14 Score=167.49 Aligned_cols=114 Identities=22% Similarity=0.376 Sum_probs=92.4
Q ss_pred CccccCCCcceeeecchhhhcccccccCHHHHHHHhhhcchhhhhc-------------CCceeEEEEEEccCCCceeEE
Q 004945 125 GWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCN-------------GATYSNIDMLINRKDGSRMLL 191 (722)
Q Consensus 125 ~~~~~~~~~~~~~v~p~fLhSnstsh~~~fsAIAELIDNSiDA~~~-------------gAt~V~IdI~~~~~~g~~~I~ 191 (722)
.|++++.+|.++.+|.-| ++..+| |+|||.||.||++. ....+.|.|..+. ....|+
T Consensus 69 ~FQaEv~~Lldiii~sLY------S~keIF--LRELISNAsDAldKlr~~~lt~~~~~~~~~~~~I~I~~D~--~~~tLt 138 (814)
T PTZ00130 69 QYQTEVTRLMDIIVNSLY------TQKEVF--LRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANK--EKNILS 138 (814)
T ss_pred ehHHHHHHHHHHHhhccC------CCCCce--eehHhhhHHHHHHHHHHHHcCCchhcCCCCCceEEEEECC--CCCEEE
Confidence 388999999999999988 777777 99999999999851 1235677776654 456899
Q ss_pred EEEcCCCCCHHHHHhhh-hccccccc----------cCCcccCcccccccccccccCCeEEEEeeecCC
Q 004945 192 IEDNGGGMNPDKMRHCM-SLGYSAKS----------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCGK 249 (722)
Q Consensus 192 I~DNG~GMs~eeL~~~l-~~G~SsK~----------r~~~~IGrfGvGfKsAsmrLG~~v~V~SR~~g~ 249 (722)
|.|||+||+.++|.+.| .+++|... .+...|||||+||++|+| ++++|.|+||+.+.
T Consensus 139 I~DnGIGMT~eEl~~nLgTIA~Sgt~~F~~~l~~~~~~~~lIGQFGVGFYSaFm-VAdkV~V~Trs~~~ 206 (814)
T PTZ00130 139 ITDTGIGMTKEDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFL-VADKVIVYTKNNND 206 (814)
T ss_pred EEECCCCCCHHHHHHHhhhhcccccHHHHHHhhccCCCcccccccccchhheee-ecCEEEEEEcCCCC
Confidence 99999999999998876 47776421 124579999999999888 99999999998653
No 8
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=99.43 E-value=9.1e-14 Score=161.47 Aligned_cols=113 Identities=21% Similarity=0.331 Sum_probs=91.2
Q ss_pred CccccCCCcceeeecchhhhcccccccCHHHHHHHhhhcchhhhhc-------------CCceeEEEEEEccCCCceeEE
Q 004945 125 GWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCN-------------GATYSNIDMLINRKDGSRMLL 191 (722)
Q Consensus 125 ~~~~~~~~~~~~~v~p~fLhSnstsh~~~fsAIAELIDNSiDA~~~-------------gAt~V~IdI~~~~~~g~~~I~ 191 (722)
.|++++++|.++.+|.-| ++..+| |+|||+||.||+.. ....+.|.|..+. ....|.
T Consensus 6 ~Fqae~~~Ll~lli~slY------s~~~if--lRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~--~~~~L~ 75 (701)
T PTZ00272 6 AFQAEINQLMSLIINTFY------SNKEIF--LRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVPDK--ENKTLT 75 (701)
T ss_pred ecHHHHHHHHHHHHhccc------CCccHh--HHHHHhhHHHHHHHHHHHhcCCchhcCCCCceEEEEEEcC--CCCEEE
Confidence 488999999999999988 778877 99999999999752 1234567776654 456899
Q ss_pred EEEcCCCCCHHHHHhhhh-ccccccc---------cCCcccCcccccccccccccCCeEEEEeeecC
Q 004945 192 IEDNGGGMNPDKMRHCMS-LGYSAKS---------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (722)
Q Consensus 192 I~DNG~GMs~eeL~~~l~-~G~SsK~---------r~~~~IGrfGvGfKsAsmrLG~~v~V~SR~~g 248 (722)
|.|||.||+.++|.+.|. +|.|... .+...|||||+||++++| +|.+|.|.||+.+
T Consensus 76 I~DnGiGMt~edl~~~LgtIa~SGt~~f~~~~~~~~~~~~iGqFGvGfyS~Fm-vad~V~V~Srs~~ 141 (701)
T PTZ00272 76 VEDNGIGMTKADLVNNLGTIARSGTKAFMEALEAGGDMSMIGQFGVGFYSAYL-VADRVTVTSKNNS 141 (701)
T ss_pred EEECCCCCCHHHHHHHhhhhhhcchHHHHHHhhccCCccccCCCCcceEEEEE-eccEEEEEEecCC
Confidence 999999999999988764 7776321 124589999999998887 9999999999754
No 9
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=99.31 E-value=2.2e-11 Score=140.58 Aligned_cols=92 Identities=21% Similarity=0.329 Sum_probs=75.3
Q ss_pred cccCHHHHHHHhhhcchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCC------ccc
Q 004945 149 SHKWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAA------NTI 222 (722)
Q Consensus 149 sh~~~fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~------~~I 222 (722)
.-..|.++|.|||+||+|| +|+.|.|.+.. ++...|.|.|||+||+.+++..++..+.++|.... .+.
T Consensus 19 vI~~~~svvkElveNsiDA---gat~I~v~i~~---~g~~~i~V~DnG~Gi~~~~~~~~~~~~~tsKi~~~~dl~~~~t~ 92 (617)
T PRK00095 19 VVERPASVVKELVENALDA---GATRIDIEIEE---GGLKLIRVRDNGCGISKEDLALALARHATSKIASLDDLEAIRTL 92 (617)
T ss_pred cccCHHHHHHHHHHHHHhC---CCCEEEEEEEe---CCeEEEEEEEcCCCCCHHHHHHHhhccCCCCCCChhHhhccccC
Confidence 3478999999999999998 89998888843 46678999999999999999999887777776432 467
Q ss_pred CcccccccccccccCCeEEEEeeecC
Q 004945 223 GQYGNGFKTSTMRLGADVIVFSCCCG 248 (722)
Q Consensus 223 GrfGvGfKsAsmrLG~~v~V~SR~~g 248 (722)
|..|.|+.+. ....+++|.||+.+
T Consensus 93 GfrGeAL~sI--~~vs~l~i~s~~~~ 116 (617)
T PRK00095 93 GFRGEALPSI--ASVSRLTLTSRTAD 116 (617)
T ss_pred CcchhHHHhh--hhceEEEEEEecCC
Confidence 8889998543 34568999999864
No 10
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=99.30 E-value=5.7e-12 Score=145.76 Aligned_cols=92 Identities=22% Similarity=0.346 Sum_probs=76.5
Q ss_pred cccCHHHHHHHhhhcchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCC------ccc
Q 004945 149 SHKWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAA------NTI 222 (722)
Q Consensus 149 sh~~~fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~------~~I 222 (722)
.-..|.+||.|||+||+|| ||+.|.|++.. +|...|.|.|||+||+++||.-++.-.+++|.... .++
T Consensus 20 VIerPaSVVKELVENSlDA---GAt~I~I~ve~---gG~~~I~V~DNG~Gi~~~Dl~la~~rHaTSKI~~~~DL~~I~Tl 93 (638)
T COG0323 20 VIERPASVVKELVENSLDA---GATRIDIEVEG---GGLKLIRVRDNGSGIDKEDLPLALLRHATSKIASLEDLFRIRTL 93 (638)
T ss_pred eeecHHHHHHHHHhccccc---CCCEEEEEEcc---CCccEEEEEECCCCCCHHHHHHHHhhhccccCCchhHHHHhhcc
Confidence 4478999999999999998 99987777743 67888999999999999999999887778886433 456
Q ss_pred CcccccccccccccCCeEEEEeeecC
Q 004945 223 GQYGNGFKTSTMRLGADVIVFSCCCG 248 (722)
Q Consensus 223 GrfGvGfKsAsmrLG~~v~V~SR~~g 248 (722)
|.-|-.| ++++-..+++|.||+.+
T Consensus 94 GFRGEAL--~SIasVsrlti~Srt~~ 117 (638)
T COG0323 94 GFRGEAL--ASIASVSRLTITSRTAE 117 (638)
T ss_pred CccHHHH--HHHHhhheeEEEeecCC
Confidence 7777766 67778999999999654
No 11
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.28 E-value=2.7e-11 Score=128.65 Aligned_cols=90 Identities=20% Similarity=0.355 Sum_probs=71.7
Q ss_pred cccCHHHHHHHhhhcchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccC------Cccc
Q 004945 149 SHKWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKA------ANTI 222 (722)
Q Consensus 149 sh~~~fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~------~~~I 222 (722)
.-..+..||.|||+||+|| +|+.|.|.+.. ++...|.|.|||.||+++++...+..++++|... ....
T Consensus 19 ~i~~~~~~l~eLi~Na~dA---~a~~I~i~~~~---~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsk~~~~~~~~~~~~~ 92 (312)
T TIGR00585 19 VIERPASVVKELVENSLDA---GATRIDVEIEE---GGLKLIEVSDNGSGIDKEDLPLACERHATSKIQSFEDLERIETL 92 (312)
T ss_pred chhhHHHHHHHHHHHHHHC---CCCEEEEEEEe---CCEEEEEEEecCCCCCHHHHHHHhhCCCcCCCCChhHhhccccc
Confidence 3478899999999999998 78988887754 2345699999999999999999887777666532 2467
Q ss_pred CcccccccccccccCCeEEEEeee
Q 004945 223 GQYGNGFKTSTMRLGADVIVFSCC 246 (722)
Q Consensus 223 GrfGvGfKsAsmrLG~~v~V~SR~ 246 (722)
|+.|.||. ++....+++|.||+
T Consensus 93 G~rG~al~--si~~~s~~~i~S~~ 114 (312)
T TIGR00585 93 GFRGEALA--SISSVSRLTITTKT 114 (312)
T ss_pred CccchHHH--HHHhhCcEEEEEee
Confidence 99999884 44455699999997
No 12
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=5e-11 Score=134.44 Aligned_cols=115 Identities=23% Similarity=0.393 Sum_probs=93.1
Q ss_pred CCccccCCCcceeeecchhhhcccccccCHHHHHHHhhhcchhhhh-----------cCCceeEEEEEEccCCCceeEEE
Q 004945 124 GGWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVC-----------NGATYSNIDMLINRKDGSRMLLI 192 (722)
Q Consensus 124 ~~~~~~~~~~~~~~v~p~fLhSnstsh~~~fsAIAELIDNSiDA~~-----------~gAt~V~IdI~~~~~~g~~~I~I 192 (722)
..|+++...+..+.++.-| +|+.+| ++|||.||.||.+ .......|.|+.++ ....|+|
T Consensus 37 ~~fqaE~~qLm~lii~s~Y------S~kEvF--lRELISNaSDAldKiRy~~lt~~~~~~~~l~I~i~~nk--~~~tlti 106 (656)
T KOG0019|consen 37 HEFQAETNQLMDIVAKSLY------SHKEVF--LRELISNASDALEKLRYLELKGDEKALPELEIRIITNK--DKRTITI 106 (656)
T ss_pred eehhhhHHhHHHHHHHHhh------cchHHH--HHhhhccccchHHHHHHHhhcCccccccceeEEeccCC--CcceEEE
Confidence 3478888999888888877 788999 9999999999975 11346677777765 6789999
Q ss_pred EEcCCCCCHHHHHhhhh-ccccccc----------cCCcccCcccccccccccccCCeEEEEeeecCC
Q 004945 193 EDNGGGMNPDKMRHCMS-LGYSAKS----------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCGK 249 (722)
Q Consensus 193 ~DNG~GMs~eeL~~~l~-~G~SsK~----------r~~~~IGrfGvGfKsAsmrLG~~v~V~SR~~g~ 249 (722)
.|.|+||+.+||.++++ +..|... .+.+.|||||+||++|++ .+.+|.|+||+.+.
T Consensus 107 ~DtGIGMTk~dLvnnLGTIAkSGtK~Fmealkea~ad~~~IGQFGvGFYSayl-VAdkV~V~tk~~~~ 173 (656)
T KOG0019|consen 107 QDTGIGMTKEDLVNNLGTIAKSGSKAFLEALKEAEAESNLIGQFGVGFYSAFM-VADRVVVTTRHPAD 173 (656)
T ss_pred EecCCCcCHHHHHhhhhhhhhcccHHHHHHHHhcccchhhhhhcccchhhhhh-hhheeEEeeccCCC
Confidence 99999999999999985 4443211 234689999999999987 99999999999764
No 13
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=8.7e-11 Score=129.66 Aligned_cols=113 Identities=22% Similarity=0.378 Sum_probs=87.1
Q ss_pred ccccCCCcceeeecchhhhcccccccCHHHHHHHhhhcchhhhhc-------------CCceeEEEEEEccCCCceeEEE
Q 004945 126 WEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCN-------------GATYSNIDMLINRKDGSRMLLI 192 (722)
Q Consensus 126 ~~~~~~~~~~~~v~p~fLhSnstsh~~~fsAIAELIDNSiDA~~~-------------gAt~V~IdI~~~~~~g~~~I~I 192 (722)
|+++++.|-.+-|+..| ..+.+| |+|||.||.||.+. .-.++.|.|..++ .+..|.|
T Consensus 77 FQaEVnRmMklIINSLY------~NKeIF--LRELISNASDAlDKIRllaLtd~~~L~~~~el~ikIK~Dk--e~klLhi 146 (785)
T KOG0020|consen 77 FQAEVNRMMKLIINSLY------RNKEIF--LRELISNASDALDKIRLLALTDKDVLGETEELEIKIKADK--EKKLLHI 146 (785)
T ss_pred HHHHHHHHHHHHHHHHh------hhhHHH--HHHHHhhhhhhhhheeeeeccChhHhCcCcceEEEEeech--hhCeeeE
Confidence 67788888877777777 667888 99999999999751 1225677776665 5778999
Q ss_pred EEcCCCCCHHHHHhhhh-c---cccc---ccc--------CCcccCcccccccccccccCCeEEEEeeecCC
Q 004945 193 EDNGGGMNPDKMRHCMS-L---GYSA---KSK--------AANTIGQYGNGFKTSTMRLGADVIVFSCCCGK 249 (722)
Q Consensus 193 ~DNG~GMs~eeL~~~l~-~---G~Ss---K~r--------~~~~IGrfGvGfKsAsmrLG~~v~V~SR~~g~ 249 (722)
.|.|.||++++|.++|+ + |++. |-. ....|||||+||++|++ +++.|.|.||+++.
T Consensus 147 ~DtGiGMT~edLi~NLGTIAkSGTs~Fl~Km~~~~~~~~~~~dlIGQFGVGFYsAfL-VAD~vvVtsKhNdD 217 (785)
T KOG0020|consen 147 TDTGIGMTREDLIKNLGTIAKSGTSEFLEKMQDSGDSEGLMNDLIGQFGVGFYSAFL-VADRVVVTSKHNDD 217 (785)
T ss_pred ecccCCccHHHHHHhhhhhhcccHHHHHHHhhccccchhhHHHHHHhcchhhhhhhh-hcceEEEEeccCCc
Confidence 99999999999999875 4 3331 111 12579999999998875 99999999999763
No 14
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=98.88 E-value=4.2e-09 Score=116.33 Aligned_cols=97 Identities=23% Similarity=0.327 Sum_probs=78.7
Q ss_pred cCHHHHHHHhhhcchhhhhcC--CceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhh-ccccccc-cCCcccCccc
Q 004945 151 KWALGAFAELLDNSLDEVCNG--ATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMS-LGYSAKS-KAANTIGQYG 226 (722)
Q Consensus 151 ~~~fsAIAELIDNSiDA~~~g--At~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~-~G~SsK~-r~~~~IGrfG 226 (722)
..+.++|.|||+||+||+... -..|.|.|.... .+...+.|+|||.|++++.+.++|. +-+++|. +..+..||+|
T Consensus 35 RsL~~tv~ElV~NSLDA~eeaGILPdI~v~I~~~~-~d~y~v~veDNGpGIP~e~IPkvFGk~LygSKfh~~~QsRGqqG 113 (538)
T COG1389 35 RSLTTTVHELVTNSLDACEEAGILPDIKVEIERIG-KDHYKVIVEDNGPGIPEEQIPKVFGKMLYGSKFHRNIQSRGQQG 113 (538)
T ss_pred hHHHHHHHHHHhcchhhHHhcCCCCceEEEEEecC-CceEEEEEecCCCCCChhHhHHHHHHHhccchhhhhhhcccccc
Confidence 567889999999999998532 235666665432 3567899999999999999999986 6666776 6778999999
Q ss_pred cccccc----ccccCCeEEEEeeecC
Q 004945 227 NGFKTS----TMRLGADVIVFSCCCG 248 (722)
Q Consensus 227 vGfKsA----smrLG~~v~V~SR~~g 248 (722)
+|.+.| .|..|+.+.|+|++.+
T Consensus 114 iGis~avLysQmTtGkPv~V~s~T~~ 139 (538)
T COG1389 114 IGISAAVLYSQMTTGKPVRVISSTGD 139 (538)
T ss_pred ccHHHHHHHHHhcCCCceEEEecCCC
Confidence 998854 6889999999999875
No 15
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=98.61 E-value=7.8e-08 Score=108.68 Aligned_cols=157 Identities=21% Similarity=0.282 Sum_probs=104.0
Q ss_pred cccCHHHHHHHhhhcchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhh-hhccccc--cccCCcccCcc
Q 004945 149 SHKWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHC-MSLGYSA--KSKAANTIGQY 225 (722)
Q Consensus 149 sh~~~fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~-l~~G~Ss--K~r~~~~IGrf 225 (722)
.-.-|..||.|||.||+|| ++|.|.|.+. .+|-..|.|.|||.||.++||.-. =+|.+|. |..+...|..|
T Consensus 24 VI~RP~NAlKEliENSLDA---~ST~I~V~vk---~GGLKLlQisDnG~GI~reDl~ilCeRftTSKL~kFEDL~~lsTy 97 (694)
T KOG1979|consen 24 VIQRPVNALKELIENSLDA---NSTSIDVLVK---DGGLKLLQISDNGSGIRREDLPILCERFTTSKLTKFEDLFSLSTY 97 (694)
T ss_pred hhhchHHHHHHHHhccccC---CCceEEEEEe---cCCeEEEEEecCCCccchhhhHHHHHHhhhhhcchhHHHHhhhhc
Confidence 3467889999999999998 8997666553 367888999999999999999864 4566653 22334455555
Q ss_pred cc-cccccccccCCeEEEEeeecCC-CCCCCceeEeeechhhcccC-CCc--ceeeecccccchhhHHHHHhhccchhhh
Q 004945 226 GN-GFKTSTMRLGADVIVFSCCCGK-DGKSPTRSIGLLSYTFLRST-GKE--DIVVPMLDYEGSQQEWKKIIRSSLDDWN 300 (722)
Q Consensus 226 Gv-GfKsAsmrLG~~v~V~SR~~g~-~G~~~t~SiglLS~Tfl~~~-~~d--dIvVPm~dye~~~~~w~~~i~~~~~dw~ 300 (722)
|. |=..|+++-+++|+|.||..+. -|.+.++.-|-+-.+= ..| +.+ .|.|-=+.|+..... ..++...+++.
T Consensus 98 GFRGEALASiShVA~VtV~TK~~~~~cayrasY~DGkm~~~p-KpcAgk~GT~I~vedLFYN~~~Rr--kal~~~~EE~~ 174 (694)
T KOG1979|consen 98 GFRGEALASISHVAHVTVTTKTAEGKCAYRASYRDGKMIATP-KPCAGKQGTIITVEDLFYNMPTRR--KALRNHAEEYR 174 (694)
T ss_pred CccHHHHhhhhheeEEEEEEeecCceeeeEEEeeccccccCC-CCccCCCceEEEehHhhccCHHHH--HHhcCcHHHHH
Confidence 53 4456999999999999998653 3333344333221110 112 233 345555788765443 33455677888
Q ss_pred hhhHhhhccCCCCC
Q 004945 301 RNVETIVQWSPFSS 314 (722)
Q Consensus 301 ~nL~~Il~ySPf~s 314 (722)
.-++++..|+-+..
T Consensus 175 ki~dlv~ryAIHn~ 188 (694)
T KOG1979|consen 175 KIMDLVGRYAIHNP 188 (694)
T ss_pred HHHHHHHHHheeCC
Confidence 87877777776554
No 16
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=98.49 E-value=1.2e-07 Score=110.25 Aligned_cols=122 Identities=20% Similarity=0.273 Sum_probs=91.2
Q ss_pred ccCCCCCCCCCccccCCCcceeeecch-hhhcccccccCHHHHHHHhhhcchhhhhcC-CceeEEEEEEccCCCceeEEE
Q 004945 115 AGDYEGAPSGGWEFSTGGMDHVRVHPK-FLHSNATSHKWALGAFAELLDNSLDEVCNG-ATYSNIDMLINRKDGSRMLLI 192 (722)
Q Consensus 115 ag~y~~~~~~~~~~~~~~~~~~~v~p~-fLhSnstsh~~~fsAIAELIDNSiDA~~~g-At~V~IdI~~~~~~g~~~I~I 192 (722)
+.+|+...... -.+++||+.-|. |+- ++...-+...|.||||||+|+..++ |+.|.|.|..+ ..|.|
T Consensus 5 ~~~y~~~~i~~----L~~lE~VrkRP~mYiG--s~~~~gl~~lv~EivdNaiDe~~ag~a~~I~V~i~~d-----g~I~V 73 (631)
T PRK05559 5 TNNYNADSIEV----LEGLEPVRKRPGMYIG--STDTRGLHHLVQEVIDNSVDEALAGHGKRIEVTLHAD-----GSVSV 73 (631)
T ss_pred cCCCCHHHCee----ccchHHHhcCCCceeC--CCCCchhhhhhhhhhccccchhhcCCCCEEEEEEeCC-----CcEEE
Confidence 34576664333 257899999997 443 3345778889999999999987664 88888887532 38999
Q ss_pred EEcCCCCCHHHHHh--------hhh-ccccccccC---CcccCcccccccccccccCCeEEEEeeecC
Q 004945 193 EDNGGGMNPDKMRH--------CMS-LGYSAKSKA---ANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (722)
Q Consensus 193 ~DNG~GMs~eeL~~--------~l~-~G~SsK~r~---~~~IGrfGvGfKsAsmrLG~~v~V~SR~~g 248 (722)
.|||.||+.+.+.. +|. +..++|..+ ....|+.|+|++.+. .+...++|.|++.+
T Consensus 74 ~DnGrGIP~~~~~~~~~~~~E~v~t~lhagsKf~~~~yk~SgGl~GvGls~vN-alS~~l~V~s~r~g 140 (631)
T PRK05559 74 RDNGRGIPVGIHPEEGKSGVEVILTKLHAGGKFSNKAYKFSGGLHGVGVSVVN-ALSSRLEVEVKRDG 140 (631)
T ss_pred EEcCCCCCcccccccCCcchheeeeeccccCccCCccccccCcccccchhhhh-hheeeEEEEEEeCC
Confidence 99999999998887 564 466666532 256899999997665 48889999999765
No 17
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=98.33 E-value=1.1e-06 Score=100.58 Aligned_cols=97 Identities=28% Similarity=0.382 Sum_probs=70.0
Q ss_pred CHHHHHHHhhhcchhhhhcCC--ceeEEEEEEcc-CCCceeEEEEEcCCCCCHHHHHhhhh-ccccccccC-CcccCccc
Q 004945 152 WALGAFAELLDNSLDEVCNGA--TYSNIDMLINR-KDGSRMLLIEDNGGGMNPDKMRHCMS-LGYSAKSKA-ANTIGQYG 226 (722)
Q Consensus 152 ~~fsAIAELIDNSiDA~~~gA--t~V~IdI~~~~-~~g~~~I~I~DNG~GMs~eeL~~~l~-~G~SsK~r~-~~~IGrfG 226 (722)
.+..+|.|||+||+||...+. ..|.|.+.... .++...|.|.|||.||+++++.++|. |.+++|... ....|.+|
T Consensus 36 ~L~qVLkNLIeNAIDa~~~~gilp~I~I~I~~~~~~~~~~~I~V~DNG~GIp~e~l~~iF~~f~~~SK~~~~~~s~G~~G 115 (535)
T PRK04184 36 ALYTTVKELVDNSLDACEEAGILPDIKIEIKRVDEGKDHYRVTVEDNGPGIPPEEIPKVFGKLLYGSKFHNLRQSRGQQG 115 (535)
T ss_pred HHHHHHHHHHHHHHHHhhhcCCCceEEEEEEEccCCCcEEEEEEEcCCCCCCHHHHHHHhhhhhccccccccccCCCCCC
Confidence 367889999999999953211 24666665321 23456799999999999999999875 555566433 45679999
Q ss_pred ccccccc----cccCCeEEEEeeecC
Q 004945 227 NGFKTST----MRLGADVIVFSCCCG 248 (722)
Q Consensus 227 vGfKsAs----mrLG~~v~V~SR~~g 248 (722)
+||..+. +..|..+.|.|+..+
T Consensus 116 LGLsiv~~isq~~~G~~I~V~S~~~~ 141 (535)
T PRK04184 116 IGISAAVLYAQMTTGKPVRVISSTGG 141 (535)
T ss_pred cchHHHHHHHHHhcCCcEEEEEecCC
Confidence 9997653 334677999998754
No 18
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=98.32 E-value=1.3e-06 Score=98.87 Aligned_cols=98 Identities=22% Similarity=0.272 Sum_probs=71.4
Q ss_pred ccCHHHHHHHhhhcchhhhhcCC--ceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhh-cccccccc-CCcccCcc
Q 004945 150 HKWALGAFAELLDNSLDEVCNGA--TYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMS-LGYSAKSK-AANTIGQY 225 (722)
Q Consensus 150 h~~~fsAIAELIDNSiDA~~~gA--t~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~-~G~SsK~r-~~~~IGrf 225 (722)
...+..++.|||+||+||..... ..|.|.+.... .+...|.|.|||.||+++++..++. |.+++|.. .....|.+
T Consensus 26 ~~~L~~VlkELVeNAIDA~~~~g~~p~I~V~i~~~g-~~~~~I~V~DNG~GIp~edl~~iF~rf~~tsK~~~~~~s~G~~ 104 (488)
T TIGR01052 26 IRSLTTVIHELVTNSLDACEEAGILPDIKVEIEKIG-KDHYKVTVEDNGPGIPEEYIPKVFGKMLAGSKFHRIIQSRGQQ 104 (488)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEECC-CceEEEEEEECCCCCCHHHHHhhhhhccccCccccccccCCCc
Confidence 35677899999999999953211 15666664321 1234799999999999999999886 67777754 44567999
Q ss_pred ccccccc----ccccCCeEEEEeeecC
Q 004945 226 GNGFKTS----TMRLGADVIVFSCCCG 248 (722)
Q Consensus 226 GvGfKsA----smrLG~~v~V~SR~~g 248 (722)
|+|+..+ .+..|..+.|.|+..+
T Consensus 105 GlGLs~~~~isq~~~G~~i~V~S~~~g 131 (488)
T TIGR01052 105 GIGISGAVLYSQMTTGKPVKVISSTGG 131 (488)
T ss_pred cEehhHHHHHHHHcCCceEEEEEecCC
Confidence 9999754 2445677999999865
No 19
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=98.29 E-value=6.9e-07 Score=103.91 Aligned_cols=108 Identities=24% Similarity=0.276 Sum_probs=82.0
Q ss_pred CCcceeeecch-hhhcccccccCHHHHHHHhhhcchhhhhc-CCceeEEEEEEccCCCceeEEEEEcCCCCCHHH-----
Q 004945 131 GGMDHVRVHPK-FLHSNATSHKWALGAFAELLDNSLDEVCN-GATYSNIDMLINRKDGSRMLLIEDNGGGMNPDK----- 203 (722)
Q Consensus 131 ~~~~~~~v~p~-fLhSnstsh~~~fsAIAELIDNSiDA~~~-gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~ee----- 203 (722)
.++++||.-|- |+-+.+ +..+|.||||||+|...+ .|+.|.|.|.. + ..|+|.|||.||+.++
T Consensus 13 ~gle~VRkRPgMYigs~~-----~~~lv~ElvdNsiDE~~ag~a~~I~V~i~~----d-~~I~V~DnGrGIp~~~h~~~g 82 (625)
T TIGR01055 13 DGLEPVRKRPGMYTDTTR-----PNHLVQEVIDNSVDEALAGFASIIMVILHQ----D-QSIEVFDNGRGMPVDIHPKEG 82 (625)
T ss_pred cccHHhhcCCCCeeCCCC-----cceeehhhhhcccchhhcCCCCEEEEEEeC----C-CeEEEEecCCccCcccccccC
Confidence 57888888886 663333 345899999999995555 59988888743 2 6899999999999988
Q ss_pred ---HHhhh-hccccccccC---CcccCcccccccccccccCCeEEEEeeecCC
Q 004945 204 ---MRHCM-SLGYSAKSKA---ANTIGQYGNGFKTSTMRLGADVIVFSCCCGK 249 (722)
Q Consensus 204 ---L~~~l-~~G~SsK~r~---~~~IGrfGvGfKsAsmrLG~~v~V~SR~~g~ 249 (722)
+.-+| .+..++|..+ ....|..|+|++... .+...+.|.|++.+.
T Consensus 83 ~~~~e~v~t~lhagsK~~~~~~~~SgG~~GvGls~vn-alS~~l~v~~~r~g~ 134 (625)
T TIGR01055 83 VSAVEVILTTLHAGGKFSNKNYHFSGGLHGVGISVVN-ALSKRVKIKVYRQGK 134 (625)
T ss_pred CcHHHHhhhcccccCCCCCCcceecCCCcchhHHHHH-HhcCeEEEEEEECCe
Confidence 77777 4666666532 246899999997655 488889999998653
No 20
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=98.28 E-value=1.4e-06 Score=102.35 Aligned_cols=96 Identities=23% Similarity=0.331 Sum_probs=70.7
Q ss_pred cCHHHHHHHhhhcchhhhhcCCc--eeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhh-ccccccccC-CcccCccc
Q 004945 151 KWALGAFAELLDNSLDEVCNGAT--YSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMS-LGYSAKSKA-ANTIGQYG 226 (722)
Q Consensus 151 ~~~fsAIAELIDNSiDA~~~gAt--~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~-~G~SsK~r~-~~~IGrfG 226 (722)
.++..+|.|||+||+||...+.. .|.|.+... +....|.|.|||.||+++++.++|. |.+++|... ....|+.|
T Consensus 45 r~L~tVLkNLIeNALDAs~~~gilp~I~V~Ie~~--g~~v~I~VeDNG~GIp~EdLp~IFerf~~tSKf~~~~~srG~rG 122 (795)
T PRK14868 45 RGLVTAVKEAVDNALDATEEAGILPDIYVEIEEV--GDYYRLVVEDNGPGITKEQIPKVFGKLLYGSRFHAREQSRGQQG 122 (795)
T ss_pred HHHHHHHHHHHHHHHHhCcccCCCceEEEEEEEC--CCEEEEEEEEcCCCCCHHHHHHHhhhhcccccccccccCCCCCc
Confidence 45788999999999999432111 466666432 3345799999999999999999986 666666432 35679999
Q ss_pred ccccccc----cccCCeEEEEeeecC
Q 004945 227 NGFKTST----MRLGADVIVFSCCCG 248 (722)
Q Consensus 227 vGfKsAs----mrLG~~v~V~SR~~g 248 (722)
+|+.++. +..|..+.|.|+..+
T Consensus 123 ~GLglai~~sqlt~GgpI~I~S~~~~ 148 (795)
T PRK14868 123 IGISAAVLYSQLTSGKPAKITSRTQG 148 (795)
T ss_pred eehHHHHHHHHHcCCCcEEEEeCCCC
Confidence 9987653 345888999999754
No 21
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=98.26 E-value=1.9e-06 Score=76.74 Aligned_cols=91 Identities=22% Similarity=0.331 Sum_probs=67.0
Q ss_pred HHHHHHHhhhcchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCccccccccc
Q 004945 153 ALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTS 232 (722)
Q Consensus 153 ~fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~~IGrfGvGfKsA 232 (722)
+..+|.||++||+++...+ ..|.|.+... .+.-.|.|.|||.||+.+++..++..+++.+. .....+.+|+||..+
T Consensus 6 l~~il~~ll~Na~~~~~~~-~~I~i~~~~~--~~~~~i~i~d~G~gi~~~~l~~~~~~~~~~~~-~~~~~~g~GlGL~~~ 81 (111)
T PF02518_consen 6 LRQILSELLDNAIKHSPEG-GKIDITIEED--DDHLSIEISDNGVGIPPEELEKLFEPFFTSDK-SETSISGHGLGLYIV 81 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHT-SEEEEEEEEE--TTEEEEEEEESSSSTTHHHHHHHCSTTSHSSS-SSGGSSSSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCC-CEEEEEEEEe--cCeEEEEEEeccccccccccccchhhcccccc-cccccCCCChHHHHH
Confidence 4568999999999985432 5667766554 36788999999999999999999886665543 445667799998643
Q ss_pred ---ccccCCeEEEEeeec
Q 004945 233 ---TMRLGADVIVFSCCC 247 (722)
Q Consensus 233 ---smrLG~~v~V~SR~~ 247 (722)
.-.++-++.+.+...
T Consensus 82 ~~~~~~~~g~l~~~~~~~ 99 (111)
T PF02518_consen 82 KQIAERHGGELTIESSEG 99 (111)
T ss_dssp HHHHHHTTEEEEEEEETT
T ss_pred HHHHHHCCCEEEEEEcCC
Confidence 234666677776643
No 22
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=98.19 E-value=1.7e-06 Score=101.04 Aligned_cols=122 Identities=23% Similarity=0.277 Sum_probs=83.6
Q ss_pred ccCCCCCCCCCccccCCCcceeeecch-hhhcccccccCHHHHHHHhhhcchhhhhcC-CceeEEEEEEccCCCceeEEE
Q 004945 115 AGDYEGAPSGGWEFSTGGMDHVRVHPK-FLHSNATSHKWALGAFAELLDNSLDEVCNG-ATYSNIDMLINRKDGSRMLLI 192 (722)
Q Consensus 115 ag~y~~~~~~~~~~~~~~~~~~~v~p~-fLhSnstsh~~~fsAIAELIDNSiDA~~~g-At~V~IdI~~~~~~g~~~I~I 192 (722)
+.+|+...... -.+++||+.-|. |+-+. -..-+.-.|.||||||+|...++ |+.|.|.|.. + ..|.|
T Consensus 5 ~~~Y~~~~i~~----L~~lE~Vr~RPgMYiGs~--~~~gl~~~v~ElvdNaiDe~~ag~a~~I~V~i~~---~--g~I~V 73 (638)
T PRK05644 5 AQEYDASQIQV----LEGLEAVRKRPGMYIGST--GERGLHHLVYEIVDNSIDEALAGYCDHIEVTINE---D--GSITV 73 (638)
T ss_pred cCCCCHHHCeE----ecchHHHhcCCCceECCC--ChhhHHhhhHHhhhcccccccCCCCCEEEEEEeC---C--CcEEE
Confidence 35577664333 257889998887 55432 23444567899999999955557 8988888753 1 38999
Q ss_pred EEcCCCCCHHHHH--------hhhh-ccccccccCC---cccCcccccccccccccCCeEEEEeeecC
Q 004945 193 EDNGGGMNPDKMR--------HCMS-LGYSAKSKAA---NTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (722)
Q Consensus 193 ~DNG~GMs~eeL~--------~~l~-~G~SsK~r~~---~~IGrfGvGfKsAsmrLG~~v~V~SR~~g 248 (722)
.|||.||+.+.-. ..|. +..++|..+. ...|+.|+|+++.. .+...++|.|++.+
T Consensus 74 ~DnG~GIp~~~h~~~ki~~~e~i~~~lhag~kfd~~~yk~s~G~~G~Gls~vn-alS~~~~v~t~r~g 140 (638)
T PRK05644 74 TDNGRGIPVDIHPKTGKPAVEVVLTVLHAGGKFGGGGYKVSGGLHGVGVSVVN-ALSTWLEVEVKRDG 140 (638)
T ss_pred EEeCccccCCccCCCCCCchHHheeeecccCccCCCcccccCCccccchhhhh-heeceEEEEEEeCC
Confidence 9999999986322 1233 3344444222 36899999998665 48888999999765
No 23
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=98.13 E-value=2.1e-06 Score=98.94 Aligned_cols=92 Identities=25% Similarity=0.299 Sum_probs=67.4
Q ss_pred cccCHHHHHHHhhhcchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccC------Cccc
Q 004945 149 SHKWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKA------ANTI 222 (722)
Q Consensus 149 sh~~~fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~------~~~I 222 (722)
.-..+.+||.|||+||+|| ||+.|.|.+.. .|-..|.|.|||+|+++.+..-+-.-.+++|... ..+.
T Consensus 17 vI~sl~sAVKELvENSiDA---GAT~I~I~~kd---yG~d~IEV~DNG~GI~~~n~~~l~lkh~TSKi~~f~Dl~~l~T~ 90 (672)
T KOG1978|consen 17 VITSLVSAVKELVENSIDA---GATAIDIKVKD---YGSDSIEVSDNGSGISATDFEGLALKHTTSKIVSFADLAVLFTL 90 (672)
T ss_pred eeccHHHHHHHHHhcCccc---CCceeeEecCC---CCcceEEEecCCCCCCccchhhhhhhhhhhcccchhhhhhhhhh
Confidence 3478889999999999998 99987776632 4788999999999999988875322345555422 2466
Q ss_pred CcccccccccccccCCeEEEEeeecC
Q 004945 223 GQYGNGFKTSTMRLGADVIVFSCCCG 248 (722)
Q Consensus 223 GrfGvGfKsAsmrLG~~v~V~SR~~g 248 (722)
|.-|-.| +++---.+|+|.||+..
T Consensus 91 GFRGEAL--SsLCa~~dv~I~Trt~~ 114 (672)
T KOG1978|consen 91 GFRGEAL--SSLCALGDVMISTRSHS 114 (672)
T ss_pred hhHHHHH--HhhhhccceEEEEeecc
Confidence 7777766 33333378889999863
No 24
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=98.04 E-value=4.6e-06 Score=97.64 Aligned_cols=110 Identities=25% Similarity=0.295 Sum_probs=76.4
Q ss_pred CCcceeeecch-hhhcccccccCHHHHHHHhhhcchhhhhcC-CceeEEEEEEccCCCceeEEEEEcCCCCCHHHHH---
Q 004945 131 GGMDHVRVHPK-FLHSNATSHKWALGAFAELLDNSLDEVCNG-ATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMR--- 205 (722)
Q Consensus 131 ~~~~~~~v~p~-fLhSnstsh~~~fsAIAELIDNSiDA~~~g-At~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~--- 205 (722)
.+++|++.-|. |+-+.. ..-+.-.|.|||+||+|...++ |+.|.|.|.. + ..|.|.|||.||+.+.-.
T Consensus 10 ~~lE~vr~RP~mYiGs~~--~~gl~~vv~Elv~NaiDe~~ag~a~~I~V~i~~---~--g~I~V~DnG~GIp~~~h~~~k 82 (654)
T TIGR01059 10 EGLEAVRKRPGMYIGSTG--ETGLHHLVYEVVDNSIDEAMAGYCDTINVTIND---D--GSVTVEDNGRGIPVDIHPEEG 82 (654)
T ss_pred cchHHHhcCCCceeCCCC--cchHHhhhHHhhhccccccccCCCCEEEEEEeC---C--CcEEEEEeCCCcCccccCcCC
Confidence 46788888886 453332 2445567899999999955457 8988888753 2 249999999999986211
Q ss_pred -----hhhh-ccccccccC---CcccCcccccccccccccCCeEEEEeeecC
Q 004945 206 -----HCMS-LGYSAKSKA---ANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (722)
Q Consensus 206 -----~~l~-~G~SsK~r~---~~~IGrfGvGfKsAsmrLG~~v~V~SR~~g 248 (722)
..|. +..++|..+ ....|..|+|+++.. .++..++|.|++.+
T Consensus 83 i~~~e~i~~~l~ag~kf~~~~~k~s~G~~G~gl~~in-alS~~l~v~~~~~g 133 (654)
T TIGR01059 83 ISAVEVVLTVLHAGGKFDKDSYKVSGGLHGVGVSVVN-ALSEWLEVTVFRDG 133 (654)
T ss_pred CCchHHheeeecccCccCCCcceecCCccchhHHHHH-HhcCeEEEEEEECC
Confidence 1232 334444322 246899999998655 48888999999865
No 25
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=98.02 E-value=1.2e-05 Score=93.84 Aligned_cols=94 Identities=19% Similarity=0.241 Sum_probs=67.5
Q ss_pred HHHHHHHhhhcchhhhhcCC--ceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhh-ccccccccC-CcccCccccc
Q 004945 153 ALGAFAELLDNSLDEVCNGA--TYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMS-LGYSAKSKA-ANTIGQYGNG 228 (722)
Q Consensus 153 ~fsAIAELIDNSiDA~~~gA--t~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~-~G~SsK~r~-~~~IGrfGvG 228 (722)
+..++.|||+||+||..... ..|.|.+.... .+...|.|.|||.||+++++.+++. |.+++|... ....|..|+|
T Consensus 37 L~~VVkELVeNAIDA~~~~g~~p~I~V~I~~~g-~~~~~I~V~DNG~GIp~e~l~~iFerF~atSK~~~~~qS~G~rG~G 115 (659)
T PRK14867 37 MTTIIHELVTNSLDACEEAEILPDIKVEIEKLG-SDHYKVAVEDNGPGIPPEFVPKVFGKMLAGSKMHRLIQSRGQQGIG 115 (659)
T ss_pred HHHHHHHHHHHHHHHhhccCCCceEEEEEEECC-CcEEEEEEEeeCeeCCHHHHhhhhccccccCcccceeccCCCCccc
Confidence 34789999999999953211 25666664421 1234699999999999999999986 555566432 3677899999
Q ss_pred ccccc----cccCCeEEEEeeec
Q 004945 229 FKTST----MRLGADVIVFSCCC 247 (722)
Q Consensus 229 fKsAs----mrLG~~v~V~SR~~ 247 (722)
+..+. +..|..+.|.|+..
T Consensus 116 La~a~~vsql~~G~pI~I~S~~g 138 (659)
T PRK14867 116 AAGVLLFSQITTGKPLKITTSTG 138 (659)
T ss_pred HHHHHHHHHHhcCCcEEEEEEcC
Confidence 97553 44688889999864
No 26
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=97.98 E-value=8.1e-06 Score=96.75 Aligned_cols=122 Identities=20% Similarity=0.248 Sum_probs=83.3
Q ss_pred cCCCCCCCCCccccCCCcceeeecch-hhhcccccccCHHHHHHHhhhcchhhhhcC-CceeEEEEEEccCCCceeEEEE
Q 004945 116 GDYEGAPSGGWEFSTGGMDHVRVHPK-FLHSNATSHKWALGAFAELLDNSLDEVCNG-ATYSNIDMLINRKDGSRMLLIE 193 (722)
Q Consensus 116 g~y~~~~~~~~~~~~~~~~~~~v~p~-fLhSnstsh~~~fsAIAELIDNSiDA~~~g-At~V~IdI~~~~~~g~~~I~I~ 193 (722)
.+|+...... -.+++||+.-|- |+-+.... .-+--.+.||||||+|...++ |+.|.|.|.. ...|.|.
T Consensus 5 ~~Y~a~~i~v----L~gle~VRkRPgMYIGst~~~-~GLhhlv~EivdNaiDE~~AG~a~~I~V~i~~-----dgsIsV~ 74 (756)
T PRK14939 5 NSYGASSIKV----LKGLDAVRKRPGMYIGDTDDG-TGLHHMVYEVVDNAIDEALAGHCDDITVTIHA-----DGSVSVS 74 (756)
T ss_pred CCCCHHHCeE----ecccHHHhcCCCCeeCCCCCC-cchhhhhhHhhcccccccccCCCCEEEEEEcC-----CCeEEEE
Confidence 3466554332 257889998887 65433220 344457899999999955557 8988887743 1389999
Q ss_pred EcCCCCCHH----------HHHhhhhccccccccC---CcccCcccccccccccccCCeEEEEeeecCC
Q 004945 194 DNGGGMNPD----------KMRHCMSLGYSAKSKA---ANTIGQYGNGFKTSTMRLGADVIVFSCCCGK 249 (722)
Q Consensus 194 DNG~GMs~e----------eL~~~l~~G~SsK~r~---~~~IGrfGvGfKsAsmrLG~~v~V~SR~~g~ 249 (722)
|||.||+.+ |+.-+ .+..++|..+ .-..|..|+|++... .+...+.|.+++.+.
T Consensus 75 DnGrGIPvd~h~~~g~~~~Elvlt-~lhAggKfd~~~ykvSgGlhGvG~svvN-AlS~~l~v~v~r~gk 141 (756)
T PRK14939 75 DNGRGIPTDIHPEEGVSAAEVIMT-VLHAGGKFDQNSYKVSGGLHGVGVSVVN-ALSEWLELTIRRDGK 141 (756)
T ss_pred EcCCcccCCcccccCCchhhheee-eecccCCCCCCcccccCCccCccceEee-hccCeEEEEEEeCCe
Confidence 999999987 44322 2444555422 126799999987655 588999999998653
No 27
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=97.89 E-value=8.1e-06 Score=94.69 Aligned_cols=88 Identities=23% Similarity=0.265 Sum_probs=62.6
Q ss_pred HHHHhhhcchhhhhcC-CceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHh--------hhh-ccccccccC---Cccc
Q 004945 156 AFAELLDNSLDEVCNG-ATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRH--------CMS-LGYSAKSKA---ANTI 222 (722)
Q Consensus 156 AIAELIDNSiDA~~~g-At~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~--------~l~-~G~SsK~r~---~~~I 222 (722)
.|.||||||+||..++ |+.|.|.|..+ ..|+|.|||.||+.+.... .|. +.+++|..+ ....
T Consensus 5 ~v~ElvdNAiD~~~~g~at~I~V~i~~~-----g~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag~kfd~~~~k~s~ 79 (594)
T smart00433 5 LVDEIVDNAADEALAGYMDTIKVTIDKD-----NSISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGGKFDDDAYKVSG 79 (594)
T ss_pred EEeeehhcccchhccCCCCEEEEEEeCC-----CeEEEEEeCCceeCCccCcCCCCcHHHhhhhhcccCCCCCCCccccC
Confidence 3689999999996544 89888877432 2899999999999654321 122 233344322 2478
Q ss_pred CcccccccccccccCCeEEEEeeecCC
Q 004945 223 GQYGNGFKTSTMRLGADVIVFSCCCGK 249 (722)
Q Consensus 223 GrfGvGfKsAsmrLG~~v~V~SR~~g~ 249 (722)
|..|+|++... .+...++|.|++.+.
T Consensus 80 G~~G~Gls~vn-alS~~l~v~~~~~g~ 105 (594)
T smart00433 80 GLHGVGASVVN-ALSTEFEVEVARDGK 105 (594)
T ss_pred CcccchHHHHH-HhcCceEEEEEeCCc
Confidence 99999997655 488999999998753
No 28
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=97.75 E-value=6.4e-05 Score=86.78 Aligned_cols=112 Identities=25% Similarity=0.282 Sum_probs=73.9
Q ss_pred CCcceeeecch-hhhcccccccCHHHHHHHhhhcchhhhhcC-CceeEEEEEEccCCCceeEEEEEcCCCCCHHH-----
Q 004945 131 GGMDHVRVHPK-FLHSNATSHKWALGAFAELLDNSLDEVCNG-ATYSNIDMLINRKDGSRMLLIEDNGGGMNPDK----- 203 (722)
Q Consensus 131 ~~~~~~~v~p~-fLhSnstsh~~~fsAIAELIDNSiDA~~~g-At~V~IdI~~~~~~g~~~I~I~DNG~GMs~ee----- 203 (722)
.+|++|+.-|- |+-+... ..-+.--+.|+||||+|...+| |+.|.|.+.. ...|+|.|||.||+-+-
T Consensus 15 ~GLEaVRkRPGMYIGst~~-~~GLhHlv~EVvDNsiDEalaG~~~~I~V~l~~-----d~sisV~DnGRGIPvdiH~~~~ 88 (635)
T COG0187 15 EGLEAVRKRPGMYIGSTGD-GRGLHHLVWEVVDNSIDEALAGYADRIDVTLHE-----DGSISVEDNGRGIPVDIHPKEK 88 (635)
T ss_pred cCcHHhhcCCCceeccCCC-CCcceeeEeEeeechHhHHhhCcCcEEEEEEcC-----CCeEEEEECCCCCccccCCCCC
Confidence 46777777775 5433221 0111123679999999987665 7777776643 35799999999999765
Q ss_pred ---HHhhhh-ccccccccCC---cccCcccccccccccccCCeEEEEeeecCC
Q 004945 204 ---MRHCMS-LGYSAKSKAA---NTIGQYGNGFKTSTMRLGADVIVFSCCCGK 249 (722)
Q Consensus 204 ---L~~~l~-~G~SsK~r~~---~~IGrfGvGfKsAsmrLG~~v~V~SR~~g~ 249 (722)
+.-+|. +....|..+. -.=|..|+|.+ +.=.|...+.|.+++++.
T Consensus 89 ~~~vEvI~T~LHAGGKFd~~~YkvSGGLHGVG~S-VVNALS~~l~v~v~r~gk 140 (635)
T COG0187 89 VSAVEVIFTVLHAGGKFDNDSYKVSGGLHGVGVS-VVNALSTWLEVEVKRDGK 140 (635)
T ss_pred CCceEEEEEeeccCcccCCCccEeecCCCccceE-EEecccceEEEEEEECCE
Confidence 333454 4444554322 24588899975 444689999999998764
No 29
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=97.74 E-value=2.9e-05 Score=89.81 Aligned_cols=89 Identities=20% Similarity=0.232 Sum_probs=63.5
Q ss_pred cCHHHHHHHhhhcchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhcccccccc------CCcccCc
Q 004945 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSK------AANTIGQ 224 (722)
Q Consensus 151 ~~~fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r------~~~~IGr 224 (722)
..+..++.|||-||+|| +|+.|.|.+.. ....+.|+|||.||..++|...-.--+++|.. ....-|.
T Consensus 20 ~sla~~VeElv~NSiDA---~At~V~v~V~~----~t~sv~ViDdG~G~~rdDl~~lg~ry~TSK~h~~ndl~~~~tyGf 92 (1142)
T KOG1977|consen 20 SSLAQCVEELVLNSIDA---EATCVAVRVNM----ETFSVQVIDDGFGMGRDDLEKLGNRYFTSKCHSVNDLENPRTYGF 92 (1142)
T ss_pred HHHHHHHHHHHhhcccc---CceEEEEEecC----ceeEEEEEecCCCccHHHHHHHHhhhhhhhceecccccccccccc
Confidence 45678999999999998 89988777733 35779999999999999999875433444432 2234455
Q ss_pred ccccccccccccCCeEEEEeeecC
Q 004945 225 YGNGFKTSTMRLGADVIVFSCCCG 248 (722)
Q Consensus 225 fGvGfKsAsmrLG~~v~V~SR~~g 248 (722)
-|-.+ |+++--..+.|+|++.+
T Consensus 93 RGeAL--asIsd~s~l~v~skkk~ 114 (1142)
T KOG1977|consen 93 RGEAL--ASISDMSSLVVISKKKN 114 (1142)
T ss_pred chhhh--hhhhhhhhhhhhhhhcC
Confidence 55554 55555566778888765
No 30
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=97.57 E-value=0.00015 Score=82.67 Aligned_cols=93 Identities=22% Similarity=0.333 Sum_probs=69.7
Q ss_pred cccCHHHHHHHhhhcchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCccccc
Q 004945 149 SHKWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNG 228 (722)
Q Consensus 149 sh~~~fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~~IGrfGvG 228 (722)
.+....+.|.-|||||+||.......=+|.+.....++.-.|.|.|+|+||+++.+...+..|+|.|. -+.-|+|
T Consensus 424 ~~~~litIlGNLidNA~eA~~~~~~~k~I~l~i~~~~~~lvieV~D~G~GI~~~~~~~iFe~G~Stk~-----~~~rGiG 498 (537)
T COG3290 424 QPHDLVTILGNLIDNALEALLAPEENKEIELSLSDRGDELVIEVADTGPGIPPEVRDKIFEKGVSTKN-----TGGRGIG 498 (537)
T ss_pred ChHHHHHHHHHHHHHHHHHhhccCCCcEEEEEEEecCCEEEEEEeCCCCCCChHHHHHHHhcCccccC-----CCCCchh
Confidence 44667789999999999997532222234443344457788999999999999999999999999984 3455778
Q ss_pred cc---ccccccCCeEEEEeee
Q 004945 229 FK---TSTMRLGADVIVFSCC 246 (722)
Q Consensus 229 fK---sAsmrLG~~v~V~SR~ 246 (722)
++ ...=++|-.+.|.+..
T Consensus 499 L~Lvkq~V~~~~G~I~~~s~~ 519 (537)
T COG3290 499 LYLVKQLVERLGGSIEVESEK 519 (537)
T ss_pred HHHHHHHHHHcCceEEEeeCC
Confidence 75 3445788889998874
No 31
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=97.52 E-value=0.00031 Score=58.35 Aligned_cols=89 Identities=18% Similarity=0.205 Sum_probs=58.9
Q ss_pred HHHHHHhhhcchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCccccccccc-
Q 004945 154 LGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTS- 232 (722)
Q Consensus 154 fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~~IGrfGvGfKsA- 232 (722)
..++.|||+||+++.......|.|.+... .+.-.|.|.|+|.||++..+...+... .+.......+.+|+|++.+
T Consensus 2 ~~~~~~ll~Na~~~~~~~~~~v~i~~~~~--~~~~~v~i~d~g~g~~~~~~~~~~~~~--~~~~~~~~~~~~g~gl~~~~ 77 (103)
T cd00075 2 QQVLLNLLSNAIKHTPEGGGRITISVERD--GDHLEIRVEDNGPGIPEEDLERIFERF--SDGSRSRKGGGTGLGLSIVK 77 (103)
T ss_pred HHHHHHHHHHHHHhCcCCCCeEEEEEEec--CCEEEEEEEeCCCCCCHHHHHHHhhhh--hcCCCCCCCCccccCHHHHH
Confidence 35899999999998432134555555432 345679999999999999998876532 1112234556788998743
Q ss_pred --ccccCCeEEEEeee
Q 004945 233 --TMRLGADVIVFSCC 246 (722)
Q Consensus 233 --smrLG~~v~V~SR~ 246 (722)
...++..+.+.+..
T Consensus 78 ~~~~~~~g~~~~~~~~ 93 (103)
T cd00075 78 KLVELHGGRIEVESEP 93 (103)
T ss_pred HHHHHcCCEEEEEeCC
Confidence 23356688876654
No 32
>PLN03237 DNA topoisomerase 2; Provisional
Probab=97.43 E-value=0.00049 Score=86.11 Aligned_cols=87 Identities=17% Similarity=0.247 Sum_probs=59.6
Q ss_pred HHHHHHhhhcchhhhhc--CCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHH-------h-hhh-ccccccccC---C
Q 004945 154 LGAFAELLDNSLDEVCN--GATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMR-------H-CMS-LGYSAKSKA---A 219 (722)
Q Consensus 154 fsAIAELIDNSiDA~~~--gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~-------~-~l~-~G~SsK~r~---~ 219 (722)
.--+-|+||||+|...+ .++.|.|.|.. ....|+|.|||.||+-+--. . +|. +.+++|..+ .
T Consensus 79 ~kifdEIldNAvDe~~r~g~~~~I~V~I~~----~~gsIsV~DnGRGIPV~iH~~eg~~~pElIft~LhAGgkFdd~~yK 154 (1465)
T PLN03237 79 YKIFDEILVNAADNKQRDPKMDSLRVVIDV----EQNLISVYNNGDGVPVEIHQEEGVYVPEMIFGHLLTSSNYDDNEKK 154 (1465)
T ss_pred hhhHHHHhhhhHhHHhhcCCCCEEEEEEEc----CCCEEEEEecCccccCCCCCCCCCccceEEEEeeeccccCCCCcce
Confidence 35689999999997522 35777777743 23589999999999875211 1 122 344455422 2
Q ss_pred cccCcccccccccccccCCeEEEEee
Q 004945 220 NTIGQYGNGFKTSTMRLGADVIVFSC 245 (722)
Q Consensus 220 ~~IGrfGvGfKsAsmrLG~~v~V~SR 245 (722)
..-|+.|+|.+.+- .+...+.|.++
T Consensus 155 vSGGlhGVGasvvN-aLS~~f~Vev~ 179 (1465)
T PLN03237 155 TTGGRNGYGAKLTN-IFSTEFVIETA 179 (1465)
T ss_pred eeccccccCccccc-cccCeeEEEEE
Confidence 36799999987655 48899999998
No 33
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=97.40 E-value=0.00041 Score=58.60 Aligned_cols=89 Identities=19% Similarity=0.287 Sum_probs=59.0
Q ss_pred HHHHHHHhhhcchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCccccccccc
Q 004945 153 ALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTS 232 (722)
Q Consensus 153 ~fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~~IGrfGvGfKsA 232 (722)
+..+|.||++|++++.. ....|.|.+... .+...|.|.|+|.||+.+.+...+..++..+. .....+++|+|++.+
T Consensus 6 l~~~~~~l~~n~~~~~~-~~~~v~i~~~~~--~~~~~i~i~d~g~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~gl~~~ 81 (111)
T smart00387 6 LRQVLSNLLDNAIKYTP-EGGRITVTLERD--GDHLEITVEDNGPGIPPEDLEKIFEPFFRTDG-RSRKIGGTGLGLSIV 81 (111)
T ss_pred HHHHHHHHHHHHHhcCC-CCCeEEEEEEEc--CCEEEEEEEeCCCCCCHHHHHHHhcCeEECCC-CCCCCCcccccHHHH
Confidence 45689999999999732 124566666443 35678999999999999999988765554431 223456789998643
Q ss_pred ---ccccCCeEEEEee
Q 004945 233 ---TMRLGADVIVFSC 245 (722)
Q Consensus 233 ---smrLG~~v~V~SR 245 (722)
...++.++.+.+.
T Consensus 82 ~~~~~~~~g~~~~~~~ 97 (111)
T smart00387 82 KKLVELHGGEISVESE 97 (111)
T ss_pred HHHHHHcCCEEEEEec
Confidence 2334555555433
No 34
>PRK10604 sensor protein RstB; Provisional
Probab=97.29 E-value=0.00069 Score=74.58 Aligned_cols=91 Identities=18% Similarity=0.314 Sum_probs=64.8
Q ss_pred CHHHHHHHhhhcchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCccccccc-
Q 004945 152 WALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK- 230 (722)
Q Consensus 152 ~~fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~~IGrfGvGfK- 230 (722)
.+..++..||+||+.+ +...|.|.+... ++.-.|.|.|||.||+++++.+.+...+.........-|.+|+|+.
T Consensus 319 ~l~~vl~NLl~NAik~---~~~~I~I~~~~~--~~~~~I~V~D~G~Gi~~e~~~~if~~f~r~~~~~~~~~~g~GLGL~i 393 (433)
T PRK10604 319 LMERVLDNLLNNALRY---AHSRVRVSLLLD--GNQACLIVEDDGPGIPPEERERVFEPFVRLDPSRDRATGGCGLGLAI 393 (433)
T ss_pred HHHHHHHHHHHHHHHh---CCCeEEEEEEEE--CCEEEEEEEEcCCCCCHHHHhhcCCCCccCCCCCCCCCCCccchHHH
Confidence 4667899999999987 346677776553 3456799999999999999999987555432111123356799974
Q ss_pred --ccccccCCeEEEEeeec
Q 004945 231 --TSTMRLGADVIVFSCCC 247 (722)
Q Consensus 231 --sAsmrLG~~v~V~SR~~ 247 (722)
...-..|.++.|.+...
T Consensus 394 vk~i~~~~gG~i~v~s~~~ 412 (433)
T PRK10604 394 VHSIALAMGGSVNCDESEL 412 (433)
T ss_pred HHHHHHHCCCEEEEEecCC
Confidence 33456788888887743
No 35
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=97.19 E-value=0.00036 Score=81.88 Aligned_cols=120 Identities=23% Similarity=0.253 Sum_probs=76.9
Q ss_pred CCCCCCCCCccccCCCcceeeecch-hhhcccccccCHHHHHHHhhhcchhhhhc-CCceeEEEEEEccCCCceeEEEEE
Q 004945 117 DYEGAPSGGWEFSTGGMDHVRVHPK-FLHSNATSHKWALGAFAELLDNSLDEVCN-GATYSNIDMLINRKDGSRMLLIED 194 (722)
Q Consensus 117 ~y~~~~~~~~~~~~~~~~~~~v~p~-fLhSnstsh~~~fsAIAELIDNSiDA~~~-gAt~V~IdI~~~~~~g~~~I~I~D 194 (722)
+|+...... -.+++||+.-|. |+-+... .-+.-.+.|+||||+|...+ .|+.|.|.|.. ...|.|.|
T Consensus 4 ~Y~~~~i~~----L~glE~VRkRPgMYIGst~~--~GL~hlv~EIvdNavDE~~ag~~~~I~V~i~~-----dgsitV~D 72 (637)
T TIGR01058 4 KYNADAIKI----LEGLDAVRKRPGMYIGSTDS--KGLHHLVWEIVDNSVDEVLAGYADNITVTLHK-----DNSITVQD 72 (637)
T ss_pred ccCHHHCee----ecccHHHhcCCCCeECCCCc--chhheehhhhhcchhhhhhcCCCcEEEEEEcC-----CCeEEEEE
Confidence 365554332 257888888886 6644332 22233477999999996543 47787777742 24899999
Q ss_pred cCCCCCHHHHHh--------hhh-ccccccccC---CcccCcccccccccccccCCeEEEEeeecC
Q 004945 195 NGGGMNPDKMRH--------CMS-LGYSAKSKA---ANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (722)
Q Consensus 195 NG~GMs~eeL~~--------~l~-~G~SsK~r~---~~~IGrfGvGfKsAsmrLG~~v~V~SR~~g 248 (722)
||.||+.+.-.. .|. +....|..+ .-.-|..|+|.+..- .+...+.|.++++|
T Consensus 73 nGrGIPv~~h~~~~~~~~E~v~t~LhaGgkfd~~~ykvSGGlhGvG~svvN-AlS~~~~V~v~r~g 137 (637)
T TIGR01058 73 DGRGIPTGIHQDGNISTVETVFTVLHAGGKFDQGGYKTAGGLHGVGASVVN-ALSSWLEVTVKRDG 137 (637)
T ss_pred CCCcccCcccCcCCCccceeEEEEecccCcCCCCcccccCCcccccccccc-eeeceEEEEEEECC
Confidence 999998642111 122 333344322 235699999987555 48889999998765
No 36
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=97.19 E-value=0.00094 Score=72.36 Aligned_cols=91 Identities=13% Similarity=0.158 Sum_probs=63.0
Q ss_pred CHHHHHHHhhhcchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCcccccccc
Q 004945 152 WALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKT 231 (722)
Q Consensus 152 ~~fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~~IGrfGvGfKs 231 (722)
++..+|.+||+||+.+ +...|.|.+... ++.-.|+|.|||.||+++++.+.+...++.+......-+.+|+|+..
T Consensus 353 ~l~~~l~nli~NA~~~---~~~~i~i~~~~~--~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~~~~~~g~GlGL~i 427 (461)
T PRK09470 353 ALASALENIVRNALRY---SHTKIEVAFSVD--KDGLTITVDDDGPGVPEEEREQIFRPFYRVDEARDRESGGTGLGLAI 427 (461)
T ss_pred HHHHHHHHHHHHHHHh---CCCcEEEEEEEE--CCEEEEEEEECCCCCCHHHHHHhcCCCccCCcccCCCCCCcchhHHH
Confidence 3566799999999997 345667766543 34567999999999999999998875544321112234567888753
Q ss_pred c---ccccCCeEEEEeeec
Q 004945 232 S---TMRLGADVIVFSCCC 247 (722)
Q Consensus 232 A---smrLG~~v~V~SR~~ 247 (722)
+ ...++.++.+.+...
T Consensus 428 v~~~v~~~~G~l~~~s~~~ 446 (461)
T PRK09470 428 VENAIQQHRGWVKAEDSPL 446 (461)
T ss_pred HHHHHHHCCCEEEEEECCC
Confidence 2 345777888887653
No 37
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=97.15 E-value=0.0011 Score=71.43 Aligned_cols=91 Identities=15% Similarity=0.177 Sum_probs=62.7
Q ss_pred cCHHHHHHHhhhcchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCccccccc
Q 004945 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (722)
Q Consensus 151 ~~~fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~~IGrfGvGfK 230 (722)
..+..++.+||+||+.+.. ....|.|.+..+ ++.-.|.|.|||.||+++.+.+.+..+++.+......-+..|+|+.
T Consensus 352 ~~l~~~~~nll~Nai~~~~-~~~~I~i~~~~~--~~~~~i~v~D~G~g~~~~~~~~~~~~~~~~~~~~~~~~~g~GlGL~ 428 (457)
T TIGR01386 352 QMFRRAISNLLSNALRHTP-DGGTITVRIERR--SDEVRVSVSNPGPGIPPEHLSRLFDRFYRVDPARSNSGEGTGLGLA 428 (457)
T ss_pred HHHHHHHHHHHHHHHHcCC-CCceEEEEEEec--CCEEEEEEEeCCCCCCHHHHHHhccccccCCcccCCCCCCccccHH
Confidence 3466789999999999732 224566666543 3556899999999999999999987666543211122345788875
Q ss_pred cc---ccccCCeEEEEe
Q 004945 231 TS---TMRLGADVIVFS 244 (722)
Q Consensus 231 sA---smrLG~~v~V~S 244 (722)
.+ .-++|-.+.+.+
T Consensus 429 i~~~~~~~~~G~~~~~~ 445 (457)
T TIGR01386 429 IVRSIMEAHGGRASAES 445 (457)
T ss_pred HHHHHHHHCCCEEEEEe
Confidence 32 345778888887
No 38
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=97.14 E-value=0.001 Score=72.67 Aligned_cols=93 Identities=16% Similarity=0.185 Sum_probs=64.2
Q ss_pred cCHHHHHHHhhhcchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCccccccc
Q 004945 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (722)
Q Consensus 151 ~~~fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~~IGrfGvGfK 230 (722)
..+..++..||+||+++.. ....|.|.+..+ ++.-.|.|.|||.||+++++.+.+...++.+.......+..|+|+.
T Consensus 316 ~~l~~vl~NLl~NAik~~~-~~~~I~i~~~~~--~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~G~GLGL~ 392 (430)
T PRK11006 316 DQLRSAISNLVYNAVNHTP-EGTHITVRWQRV--PQGAEFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLA 392 (430)
T ss_pred HHHHHHHHHHHHHHHhcCC-CCCeEEEEEEEc--CCEEEEEEEEcCCCCCHHHHHHhccCcccccCCCCCCCCCCchHHH
Confidence 3467889999999999842 223456655443 3456799999999999999999987555433211223455688875
Q ss_pred c---cccccCCeEEEEeee
Q 004945 231 T---STMRLGADVIVFSCC 246 (722)
Q Consensus 231 s---AsmrLG~~v~V~SR~ 246 (722)
. ..-..|..+.|.|..
T Consensus 393 ivk~iv~~~gG~i~i~s~~ 411 (430)
T PRK11006 393 IVKHALSHHDSRLEIESEV 411 (430)
T ss_pred HHHHHHHHCCCEEEEEecC
Confidence 3 234578888888775
No 39
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=97.05 E-value=0.00093 Score=66.51 Aligned_cols=88 Identities=15% Similarity=0.166 Sum_probs=59.7
Q ss_pred cCHHHHHHHhhhcchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCccccccc
Q 004945 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (722)
Q Consensus 151 ~~~fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~~IGrfGvGfK 230 (722)
.++..+|..||+||++|.. ...|.|.+.... +.-.|.|.|||.||+++.+...+..+++.+.... -.|+|+.
T Consensus 227 ~~l~~vl~nLi~NAi~~~~--~~~i~i~~~~~~--~~i~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~~----g~GlGL~ 298 (336)
T COG0642 227 ERLRQVLVNLLSNAIKYTP--GGEITISVRQDD--EQVTISVEDTGPGIPEEELERIFEPFFRTDKSRS----GTGLGLA 298 (336)
T ss_pred HHHHHHHHHHHHHHhccCC--CCeEEEEEEecC--CeEEEEEEcCCCCCCHHHHHHhccCeeccCCCCC----CCCccHH
Confidence 5566799999999999842 466666665432 2467999999999999999999887777663211 3456654
Q ss_pred cc---ccccCCeEEEEeee
Q 004945 231 TS---TMRLGADVIVFSCC 246 (722)
Q Consensus 231 sA---smrLG~~v~V~SR~ 246 (722)
.+ .-..|.++.+.+..
T Consensus 299 i~~~~~~~~~g~i~~~~~~ 317 (336)
T COG0642 299 IVKRIVELHGGTISVESEP 317 (336)
T ss_pred HHHHHHHHcCCEEEEEecC
Confidence 22 22344445555553
No 40
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=97.04 E-value=0.0016 Score=71.04 Aligned_cols=93 Identities=17% Similarity=0.197 Sum_probs=64.0
Q ss_pred CHHHHHHHhhhcchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCcccccccc
Q 004945 152 WALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKT 231 (722)
Q Consensus 152 ~~fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~~IGrfGvGfKs 231 (722)
.+..+|.+||+||+.+.. ....|.|.+... ++.-.|.|.|||.||+++++.+.+...++.+.......|..|+|+..
T Consensus 352 ~l~qvl~nll~NAi~~~~-~~~~I~i~~~~~--~~~~~i~V~D~G~Gi~~e~~~~lf~~~~~~~~~~~~~~~g~GlGL~i 428 (466)
T PRK10549 352 RLMQLFNNLLENSLRYTD-SGGSLHISAEQR--DKTLRLTFADSAPGVSDEQLQKLFERFYRTEGSRNRASGGSGLGLAI 428 (466)
T ss_pred HHHHHHHHHHHHHHHhCC-CCCEEEEEEEEc--CCEEEEEEEecCCCcCHHHHHHhccCcccCCCCcCCCCCCCcHHHHH
Confidence 456789999999999732 233566666543 35567899999999999999998875554332222234567888753
Q ss_pred ---cccccCCeEEEEeeec
Q 004945 232 ---STMRLGADVIVFSCCC 247 (722)
Q Consensus 232 ---AsmrLG~~v~V~SR~~ 247 (722)
..-..|.++.+.+...
T Consensus 429 v~~i~~~~~G~l~~~s~~~ 447 (466)
T PRK10549 429 CLNIVEAHNGRIIAAHSPF 447 (466)
T ss_pred HHHHHHHcCCEEEEEECCC
Confidence 2345788888888753
No 41
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=97.02 E-value=0.0019 Score=65.86 Aligned_cols=93 Identities=17% Similarity=0.199 Sum_probs=62.0
Q ss_pred cCHHHHHHHhhhcchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCccccccc
Q 004945 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (722)
Q Consensus 151 ~~~fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~~IGrfGvGfK 230 (722)
..+..+|.+||.||+++.. ....|.|.+... ++.-.|.|.|||.||+++.+.+++...+..+......-+..|+|+.
T Consensus 228 ~~l~~vl~nll~Nai~~~~-~~~~i~i~~~~~--~~~~~i~i~d~G~gi~~~~~~~if~~~~~~~~~~~~~~~g~glGL~ 304 (333)
T TIGR02966 228 DELRSAFSNLVSNAIKYTP-EGGTITVRWRRD--GGGAEFSVTDTGIGIAPEHLPRLTERFYRVDKSRSRDTGGTGLGLA 304 (333)
T ss_pred HHHHHHHHHHHHHhheeCC-CCCeEEEEEEEc--CCEEEEEEEecCCCCCHHHHhhhccCceecCcccccCCCCCcccHH
Confidence 4467789999999999732 234455555433 3456799999999999999999987554322111112234588875
Q ss_pred cc---ccccCCeEEEEeee
Q 004945 231 TS---TMRLGADVIVFSCC 246 (722)
Q Consensus 231 sA---smrLG~~v~V~SR~ 246 (722)
.+ .-.+|.++.+.+..
T Consensus 305 ~~~~~~~~~gG~i~~~s~~ 323 (333)
T TIGR02966 305 IVKHVLSRHHARLEIESEL 323 (333)
T ss_pred HHHHHHHHCCCEEEEEecC
Confidence 32 33478888888875
No 42
>PRK09303 adaptive-response sensory kinase; Validated
Probab=96.94 E-value=0.0026 Score=69.27 Aligned_cols=92 Identities=16% Similarity=0.107 Sum_probs=63.4
Q ss_pred CHHHHHHHhhhcchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCcccccccc
Q 004945 152 WALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKT 231 (722)
Q Consensus 152 ~~fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~~IGrfGvGfKs 231 (722)
.+..+|..||+||+.+.. ....|.|.+.... ++.-.|.|.|||.||+++++.+.|...++.+. ...-+-+|+||..
T Consensus 272 ~l~qvl~NLl~NAik~~~-~~~~I~i~~~~~~-~~~v~i~V~D~G~GI~~~~~~~iF~pf~~~~~--~~~~~G~GLGL~i 347 (380)
T PRK09303 272 RIRQVLLNLLDNAIKYTP-EGGTITLSMLHRT-TQKVQVSICDTGPGIPEEEQERIFEDRVRLPR--DEGTEGYGIGLSV 347 (380)
T ss_pred HHHHHHHHHHHHHHhcCC-CCceEEEEEEecC-CCEEEEEEEEcCCCCCHHHHHHHccCceeCCC--CCCCCcccccHHH
Confidence 356789999999999842 2234555543322 34467999999999999999999976555442 2233458888853
Q ss_pred ---cccccCCeEEEEeeec
Q 004945 232 ---STMRLGADVIVFSCCC 247 (722)
Q Consensus 232 ---AsmrLG~~v~V~SR~~ 247 (722)
..-.+|.++.|.+...
T Consensus 348 ~~~iv~~~gG~i~v~s~~~ 366 (380)
T PRK09303 348 CRRIVRVHYGQIWVDSEPG 366 (380)
T ss_pred HHHHHHHcCCEEEEEecCC
Confidence 2345788898888754
No 43
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=96.90 E-value=0.0018 Score=68.61 Aligned_cols=91 Identities=16% Similarity=0.149 Sum_probs=64.6
Q ss_pred ccCHHHHHHHhhhcchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCcccccc
Q 004945 150 HKWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGF 229 (722)
Q Consensus 150 h~~~fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~~IGrfGvGf 229 (722)
..|+..++..||+||+.+.. ....|.|.+..+ ++.-.|.|.|||.||+++++.+.+..++..+ ..-+..|+|+
T Consensus 245 ~~~l~~il~nLi~NA~k~~~-~~~~I~I~~~~~--~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~----~~~~g~GlGL 317 (356)
T PRK10755 245 ATLLRLLLRNLVENAHRYSP-EGSTITIKLSQE--DGGAVLAVEDEGPGIDESKCGELSKAFVRMD----SRYGGIGLGL 317 (356)
T ss_pred HHHHHHHHHHHHHHHHhhCC-CCCcEEEEEEEc--CCEEEEEEEECCCCCCHHHHHHhCCCeEeCC----CCCCCcCHHH
Confidence 35677899999999999732 234566666443 3556899999999999999999887555322 1224568887
Q ss_pred ccc---ccccCCeEEEEeeec
Q 004945 230 KTS---TMRLGADVIVFSCCC 247 (722)
Q Consensus 230 KsA---smrLG~~v~V~SR~~ 247 (722)
..+ .-.+|..+.+.|...
T Consensus 318 ~i~~~i~~~~gg~i~i~s~~~ 338 (356)
T PRK10755 318 SIVSRITQLHHGQFFLQNRQE 338 (356)
T ss_pred HHHHHHHHHCCCEEEEEECCC
Confidence 532 345788888888754
No 44
>PRK10364 sensor protein ZraS; Provisional
Probab=96.88 E-value=0.0023 Score=70.49 Aligned_cols=87 Identities=14% Similarity=0.186 Sum_probs=64.2
Q ss_pred cCHHHHHHHhhhcchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCccccccc
Q 004945 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (722)
Q Consensus 151 ~~~fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~~IGrfGvGfK 230 (722)
..+..++..||+||+++.. ....|.|.+..+ ++.-.|.|.|||.||+++.+.+.+..+++.|. +..|+|+.
T Consensus 347 ~~l~~il~NLl~NA~k~~~-~~~~I~i~~~~~--~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~k~------~g~GlGL~ 417 (457)
T PRK10364 347 DRLTQVLLNLYLNAIQAIG-QHGVISVTASES--GAGVKISVTDSGKGIAADQLEAIFTPYFTTKA------EGTGLGLA 417 (457)
T ss_pred HHHHHHHHHHHHHHHHhcC-CCCeEEEEEEEe--CCeEEEEEEECCCCCCHHHHHHHhCccccCCC------CCCcccHH
Confidence 4567889999999999843 345666666543 34568999999999999999999987777652 23578875
Q ss_pred c---cccccCCeEEEEeee
Q 004945 231 T---STMRLGADVIVFSCC 246 (722)
Q Consensus 231 s---AsmrLG~~v~V~SR~ 246 (722)
. ..-.+|-++.|.+..
T Consensus 418 iv~~~v~~~gG~i~i~s~~ 436 (457)
T PRK10364 418 VVHNIVEQHGGTIQVASQE 436 (457)
T ss_pred HHHHHHHHCCCEEEEEeCC
Confidence 3 234578888887764
No 45
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=96.86 E-value=0.0028 Score=68.54 Aligned_cols=89 Identities=18% Similarity=0.188 Sum_probs=61.6
Q ss_pred CHHHHHHHhhhcchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCcccccccc
Q 004945 152 WALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKT 231 (722)
Q Consensus 152 ~~fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~~IGrfGvGfKs 231 (722)
.+..++..||+||+.+ +...|.|.+..+ ++.-.|.|.|||.||+++++.+.+..++.... ...-+.+|+|+.-
T Consensus 331 ~l~~il~NLl~NA~k~---~~~~i~i~~~~~--~~~~~i~V~D~G~Gi~~~~~~~~~~~f~~~~~--~~~~~g~GlGL~i 403 (435)
T PRK09467 331 AIKRALANLVVNAARY---GNGWIKVSSGTE--GKRAWFQVEDDGPGIPPEQLKHLFQPFTRGDS--ARGSSGTGLGLAI 403 (435)
T ss_pred HHHHHHHHHHHHHHHh---CCCeEEEEEEec--CCEEEEEEEecCCCcCHHHHHHhcCCcccCCC--CCCCCCeehhHHH
Confidence 4566899999999987 456667766543 34567999999999999999999876554321 1112457888753
Q ss_pred c---ccccCCeEEEEeeec
Q 004945 232 S---TMRLGADVIVFSCCC 247 (722)
Q Consensus 232 A---smrLG~~v~V~SR~~ 247 (722)
+ .-..|.++.+.+...
T Consensus 404 v~~i~~~~~g~l~i~~~~~ 422 (435)
T PRK09467 404 VKRIVDQHNGKVELGNSEE 422 (435)
T ss_pred HHHHHHHCCCEEEEEECCC
Confidence 2 234677888876643
No 46
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=96.80 E-value=0.0033 Score=70.47 Aligned_cols=90 Identities=17% Similarity=0.214 Sum_probs=63.9
Q ss_pred CHHHHHHHhhhcchhhhhc---CCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCccccc
Q 004945 152 WALGAFAELLDNSLDEVCN---GATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNG 228 (722)
Q Consensus 152 ~~fsAIAELIDNSiDA~~~---gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~~IGrfGvG 228 (722)
.+...+.+||+||+++... +...|.|.+... ++.-.|.|.|||.||+++++.+.|..|++.|.+ ..|..|+|
T Consensus 432 ~l~~vl~nLl~NAi~~~~~~~~~~~~i~i~~~~~--~~~~~i~V~D~G~Gi~~~~~~~iF~~~~~tk~~---~~~g~GlG 506 (545)
T PRK15053 432 EFAAIVGNLLDNAFEASLRSDEGNKIVELFLSDE--GDDVVIEVADQGCGVPESLRDKIFEQGVSTRAD---EPGEHGIG 506 (545)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCCceEEEEEEEC--CCEEEEEEEeCCCCcCHHHHHHHhCCCCCCCCC---CCCCceeC
Confidence 3556789999999998531 235566655432 355679999999999999999999988886632 23445888
Q ss_pred cccc---ccccCCeEEEEeee
Q 004945 229 FKTS---TMRLGADVIVFSCC 246 (722)
Q Consensus 229 fKsA---smrLG~~v~V~SR~ 246 (722)
+..+ .-..|..+.|.|..
T Consensus 507 L~ivk~iv~~~~G~i~v~s~~ 527 (545)
T PRK15053 507 LYLIASYVTRCGGVITLEDND 527 (545)
T ss_pred HHHHHHHHHHcCCEEEEEECC
Confidence 7532 33467778887764
No 47
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=96.76 E-value=0.0033 Score=68.02 Aligned_cols=92 Identities=21% Similarity=0.185 Sum_probs=64.0
Q ss_pred cCHHHHHHHhhhcchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCccccccc
Q 004945 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (722)
Q Consensus 151 ~~~fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~~IGrfGvGfK 230 (722)
.++..++.+||.||+.+. .....|.|.+... ++.-.|+|.|||.||+++++.+.+...++.+.. ...-+..|+|++
T Consensus 367 ~~l~~vl~nli~Na~~~~-~~~~~i~i~~~~~--~~~~~i~i~D~G~Gi~~~~~~~i~~~~~~~~~~-~~~~~~~GlGL~ 442 (475)
T PRK11100 367 FLLRQALGNLLDNAIDFS-PEGGTITLSAEVD--GEQVALSVEDQGPGIPDYALPRIFERFYSLPRP-ANGRKSTGLGLA 442 (475)
T ss_pred HHHHHHHHHHHHHHHHhC-CCCCEEEEEEEEc--CCEEEEEEEECCCCCCHHHHHHHHHHHccCCCC-CCCCCCcchhHH
Confidence 457788999999999973 2345667766543 356789999999999999999998766544321 112234578875
Q ss_pred cc---ccccCCeEEEEeee
Q 004945 231 TS---TMRLGADVIVFSCC 246 (722)
Q Consensus 231 sA---smrLG~~v~V~SR~ 246 (722)
.+ ...+|..+.+.+..
T Consensus 443 i~~~~~~~~~G~i~i~s~~ 461 (475)
T PRK11100 443 FVREVARLHGGEVTLRNRP 461 (475)
T ss_pred HHHHHHHHCCCEEEEEEcC
Confidence 32 33477788888865
No 48
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=96.65 E-value=0.0033 Score=73.61 Aligned_cols=85 Identities=22% Similarity=0.243 Sum_probs=61.3
Q ss_pred HHHHHHHhhhcchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHH-HHhhhhccccccccCCcccCcccccccc
Q 004945 153 ALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDK-MRHCMSLGYSAKSKAANTIGQYGNGFKT 231 (722)
Q Consensus 153 ~fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~ee-L~~~l~~G~SsK~r~~~~IGrfGvGfKs 231 (722)
+..++.+||+||+++.. ....|.|.+... ++.-.|.|.|||.||+++. ..+.+...++.|. +..|+|+..
T Consensus 580 l~~vl~nLl~NAik~~~-~~~~I~I~~~~~--~~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~~~------~G~GLGL~i 650 (679)
T TIGR02916 580 LERVLGHLVQNALEATP-GEGRVAIRVERE--CGAARIEIEDSGCGMSPAFIRERLFKPFDTTKG------AGMGIGVYE 650 (679)
T ss_pred HHHHHHHHHHHHHHhCC-CCCcEEEEEEEc--CCEEEEEEEEcCCCcChHHHHHhcCCCCCCCCC------CCcchhHHH
Confidence 55689999999999842 234566766543 3567899999999999999 6667776665542 346788753
Q ss_pred c---ccccCCeEEEEeee
Q 004945 232 S---TMRLGADVIVFSCC 246 (722)
Q Consensus 232 A---smrLG~~v~V~SR~ 246 (722)
+ .-.+|-++.|.+..
T Consensus 651 ~~~iv~~~gG~i~v~s~~ 668 (679)
T TIGR02916 651 CRQYVEEIGGRIEVESTP 668 (679)
T ss_pred HHHHHHHcCCEEEEEecC
Confidence 3 34588889888865
No 49
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=96.65 E-value=0.0053 Score=66.17 Aligned_cols=91 Identities=14% Similarity=0.165 Sum_probs=61.2
Q ss_pred HHHHHHHhhhcchhhhhcCC-ceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCcccccccc
Q 004945 153 ALGAFAELLDNSLDEVCNGA-TYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKT 231 (722)
Q Consensus 153 ~fsAIAELIDNSiDA~~~gA-t~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~~IGrfGvGfKs 231 (722)
+-.+|.+||.||+++...+. ....|.+.....++.-.|.|.|||.||+++.+.+.|...++.|... .+.-|+||..
T Consensus 388 l~~vl~Nl~~NAik~~~~~~~~~~~i~i~~~~~~~~~~~~V~D~G~Gi~~~~~~~iF~~f~~~~~~~---~~G~GlGL~i 464 (494)
T TIGR02938 388 LRSLFKALVDNAIEAMNIKGWKRRELSITTALNGDLIVVSILDSGPGIPQDLRYKVFEPFFTTKGGS---RKHIGMGLSV 464 (494)
T ss_pred HHHHHHHHHHHHHHHhhccCCCcceEEEEEEecCCEEEEEEEeCCCCCCHHHHHHhcCCCcccCCCC---CCCCcccHHH
Confidence 56789999999999853331 1223443333234566899999999999999999998656554211 3345777743
Q ss_pred ---cccccCCeEEEEeee
Q 004945 232 ---STMRLGADVIVFSCC 246 (722)
Q Consensus 232 ---AsmrLG~~v~V~SR~ 246 (722)
..-.+|-.+.|.|..
T Consensus 465 ~~~iv~~~gG~i~~~s~~ 482 (494)
T TIGR02938 465 AQEIVADHGGIIDLDDDY 482 (494)
T ss_pred HHHHHHHcCCEEEEEECC
Confidence 233578999987764
No 50
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=96.51 E-value=0.0056 Score=72.54 Aligned_cols=93 Identities=12% Similarity=0.075 Sum_probs=65.1
Q ss_pred CHHHHHHHhhhcchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCcccccccc
Q 004945 152 WALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKT 231 (722)
Q Consensus 152 ~~fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~~IGrfGvGfKs 231 (722)
.+..+|..||+||+.+.. ....|.|.+..+ ++.-.|.|.|||.||+++++.+.+...++.+......-+..|+|+..
T Consensus 597 ~L~~il~NLI~NAik~s~-~~~~I~I~~~~~--~~~v~I~V~D~G~GI~~e~~~~IFe~F~t~~~~~~~~~~g~GLGL~I 673 (703)
T TIGR03785 597 LIAQMLDKLVDNAREFSP-EDGLIEVGLSQN--KSHALLTVSNEGPPLPEDMGEQLFDSMVSVRDQGAQDQPHLGLGLYI 673 (703)
T ss_pred HHHHHHHHHHHHHHHHCC-CCCeEEEEEEEc--CCEEEEEEEEcCCCCCHHHHHHHhCCCeecCCCCCCCCCCccHHHHH
Confidence 456789999999999843 234466666543 35567999999999999999999986665442222223357888854
Q ss_pred ---cccccCCeEEEEeeec
Q 004945 232 ---STMRLGADVIVFSCCC 247 (722)
Q Consensus 232 ---AsmrLG~~v~V~SR~~ 247 (722)
.....|-++.+.+...
T Consensus 674 vr~Iv~~~gG~I~v~s~~~ 692 (703)
T TIGR03785 674 VRLIADFHQGRIQAENRQQ 692 (703)
T ss_pred HHHHHHHcCCEEEEEECCC
Confidence 3455788888877653
No 51
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=96.47 E-value=0.0072 Score=66.99 Aligned_cols=87 Identities=23% Similarity=0.357 Sum_probs=62.3
Q ss_pred CHHHHHHHhhhcchhhhhc-CCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCccccccc
Q 004945 152 WALGAFAELLDNSLDEVCN-GATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (722)
Q Consensus 152 ~~fsAIAELIDNSiDA~~~-gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~~IGrfGvGfK 230 (722)
.+..++.+|++||+++... ....|.|.+... ++.-.|.|.|||.||+++++.+.+..+++.|. +..|+||.
T Consensus 433 ~l~~vl~nLl~NAi~~~~~~~~~~I~i~~~~~--~~~~~i~V~D~G~gi~~~~~~~iF~~~~~~~~------~g~GlGL~ 504 (542)
T PRK11086 433 ELITILGNLIENALEAVGGEEGGEISVSLHYR--NGWLHCEVSDDGPGIAPDEIDAIFDKGYSTKG------SNRGVGLY 504 (542)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCcEEEEEEEEc--CCEEEEEEEECCCCCCHHHHHHHHhCCCccCC------CCCcCcHH
Confidence 3667899999999998532 234566665443 35567999999999999999999987777652 13478875
Q ss_pred cc---ccccCCeEEEEeee
Q 004945 231 TS---TMRLGADVIVFSCC 246 (722)
Q Consensus 231 sA---smrLG~~v~V~SR~ 246 (722)
.+ .-..|..+.|.+..
T Consensus 505 iv~~iv~~~~G~i~v~s~~ 523 (542)
T PRK11086 505 LVKQSVENLGGSIAVESEP 523 (542)
T ss_pred HHHHHHHHcCCEEEEEeCC
Confidence 32 34577888887764
No 52
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=96.44 E-value=0.0041 Score=78.23 Aligned_cols=89 Identities=19% Similarity=0.205 Sum_probs=62.1
Q ss_pred HHHHHHhhhcchhhhhc-----CCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHh--------hhh-ccccccccC-
Q 004945 154 LGAFAELLDNSLDEVCN-----GATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRH--------CMS-LGYSAKSKA- 218 (722)
Q Consensus 154 fsAIAELIDNSiDA~~~-----gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~--------~l~-~G~SsK~r~- 218 (722)
.-.+.|+||||+|...+ .++.|.|.|.. +...|.|.|||.||+-+.-.+ +|. +.+++|..+
T Consensus 59 ~ki~dEIldNAvDe~~r~~~~g~~~~I~V~i~~----d~g~IsV~dnGrGIPv~~h~~~~~~~pElIft~L~aGgkfdd~ 134 (1388)
T PTZ00108 59 YKIFDEILVNAADNKARDKGGHRMTYIKVTIDE----ENGEISVYNDGEGIPVQIHKEHKIYVPEMIFGHLLTSSNYDDT 134 (1388)
T ss_pred hhhHHHHhhhhhhhhcccCCCCCccEEEEEEec----cCCeEEEEecCCcccCCCCCCCCCccceEEEEEeeccccCCCC
Confidence 35679999999997652 36777777743 235799999999997653211 122 334455432
Q ss_pred --CcccCcccccccccccccCCeEEEEeeec
Q 004945 219 --ANTIGQYGNGFKTSTMRLGADVIVFSCCC 247 (722)
Q Consensus 219 --~~~IGrfGvGfKsAsmrLG~~v~V~SR~~ 247 (722)
...-|+.|+|.+.+- .+...+.|.++..
T Consensus 135 ~yKvSGGlhGVGasvvN-alS~~f~Vev~r~ 164 (1388)
T PTZ00108 135 EKRVTGGRNGFGAKLTN-IFSTKFTVECVDS 164 (1388)
T ss_pred ceeeecccccCCccccc-cccceEEEEEEEC
Confidence 236799999987655 4899999999986
No 53
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=96.38 E-value=0.0086 Score=71.81 Aligned_cols=89 Identities=18% Similarity=0.214 Sum_probs=64.1
Q ss_pred cCHHHHHHHhhhcchhhhhcCCceeEEEEEEc-------------cCCCceeEEEEEcCCCCCHHHHHhhhhcccccccc
Q 004945 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLIN-------------RKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSK 217 (722)
Q Consensus 151 ~~~fsAIAELIDNSiDA~~~gAt~V~IdI~~~-------------~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r 217 (722)
..+..+|..||+||+.+.. ....|.|.+... ..++.-.|.|.|||.||+++++.+.+...++.+.
T Consensus 559 ~~L~qvl~NLl~NAik~~~-~~g~I~I~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~~~~iFe~F~~~~~- 636 (828)
T PRK13837 559 AELQQVLMNLCSNAAQAMD-GAGRVDISLSRAKLRAPKVLSHGVLPPGRYVLLRVSDTGAGIDEAVLPHIFEPFFTTRA- 636 (828)
T ss_pred HHHHHHHHHHHHHHHHHcc-cCCeEEEEEEEeecccccccccccCCCCCEEEEEEEECCCCCCHHHHHHhhCCcccCCC-
Confidence 3467889999999999853 344566666543 1133457999999999999999999886665442
Q ss_pred CCcccCcccccccc---cccccCCeEEEEeee
Q 004945 218 AANTIGQYGNGFKT---STMRLGADVIVFSCC 246 (722)
Q Consensus 218 ~~~~IGrfGvGfKs---AsmrLG~~v~V~SR~ 246 (722)
+..|+||.. ..-.+|.++.|.|..
T Consensus 637 -----~G~GLGL~i~~~iv~~~gG~i~v~s~~ 663 (828)
T PRK13837 637 -----GGTGLGLATVHGIVSAHAGYIDVQSTV 663 (828)
T ss_pred -----CCCcchHHHHHHHHHHCCCEEEEEecC
Confidence 566888743 244578889988874
No 54
>PRK09835 sensor kinase CusS; Provisional
Probab=96.38 E-value=0.0085 Score=65.52 Aligned_cols=91 Identities=18% Similarity=0.156 Sum_probs=61.2
Q ss_pred CHHHHHHHhhhcchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCcccccccc
Q 004945 152 WALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKT 231 (722)
Q Consensus 152 ~~fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~~IGrfGvGfKs 231 (722)
.+..+|.+||+||+.+.. ....|.|.+... .+.-.|.|.|||.||+++++...+...+.........-+.+|+||..
T Consensus 375 ~l~~vl~nll~Na~~~~~-~~~~I~i~~~~~--~~~~~i~v~d~G~gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i 451 (482)
T PRK09835 375 MLRRAISNLLSNALRYTP-AGEAITVRCQEV--DHQVQLVVENPGTPIAPEHLPRLFDRFYRVDPSRQRKGEGSGIGLAI 451 (482)
T ss_pred HHHHHHHHHHHHHHhcCC-CCCeEEEEEEEe--CCEEEEEEEECCCCcCHHHHHHHhCCcccCCCCCCCCCCCcchHHHH
Confidence 467789999999999732 233566666543 34567999999999999999988864443221111122457888742
Q ss_pred ---cccccCCeEEEEee
Q 004945 232 ---STMRLGADVIVFSC 245 (722)
Q Consensus 232 ---AsmrLG~~v~V~SR 245 (722)
-.-.+|.++.|.+.
T Consensus 452 ~~~i~~~~~g~i~~~s~ 468 (482)
T PRK09835 452 VKSIVVAHKGTVAVTSD 468 (482)
T ss_pred HHHHHHHCCCEEEEEEC
Confidence 34457888888775
No 55
>PRK10815 sensor protein PhoQ; Provisional
Probab=96.36 E-value=0.0095 Score=67.37 Aligned_cols=86 Identities=17% Similarity=0.225 Sum_probs=60.6
Q ss_pred HHHHHHHhhhcchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCccccccccc
Q 004945 153 ALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTS 232 (722)
Q Consensus 153 ~fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~~IGrfGvGfKsA 232 (722)
+..++..||+||+.+. ...+.|.+... ++.-.|.|.|||.||+++++.+.+..++..+. ..+-.|+|+..+
T Consensus 379 l~~vl~NLi~NAik~~---~~~i~I~~~~~--~~~v~I~V~D~G~GI~~e~~~~iF~~f~~~~~----~~~G~GLGL~Iv 449 (485)
T PRK10815 379 FMEVMGNVLDNACKYC---LEFVEISARQT--DEHLHIVVEDDGPGIPESKRELIFDRGQRADT----LRPGQGLGLSVA 449 (485)
T ss_pred HHHHHHHHHHHHHHhc---CCcEEEEEEEe--CCEEEEEEEECCCCcCHHHHHHHhCCcccCCC----CCCCcchhHHHH
Confidence 4678999999999983 34566665443 34567999999999999999998875554321 113468887532
Q ss_pred ---ccccCCeEEEEeeec
Q 004945 233 ---TMRLGADVIVFSCCC 247 (722)
Q Consensus 233 ---smrLG~~v~V~SR~~ 247 (722)
.-..|-++.|.+...
T Consensus 450 k~iv~~~gG~i~v~s~~~ 467 (485)
T PRK10815 450 REITEQYEGKISAGDSPL 467 (485)
T ss_pred HHHHHHcCCEEEEEECCC
Confidence 345788888887753
No 56
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=96.34 E-value=0.0074 Score=66.57 Aligned_cols=87 Identities=22% Similarity=0.273 Sum_probs=60.2
Q ss_pred CHHHHHHHhhhcchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCcccccccc
Q 004945 152 WALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKT 231 (722)
Q Consensus 152 ~~fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~~IGrfGvGfKs 231 (722)
.+..++.+||+||+.+... ...|.|.+.... ++.-.|.|.|||.||+++.+...+..+++.+. +..|+|+..
T Consensus 500 ~l~~~~~nli~na~~~~~~-~~~i~v~~~~~~-~~~~~i~v~D~G~G~~~~~~~~~f~~~~~~~~------~g~glGL~~ 571 (607)
T PRK11360 500 LLKQVLLNILINAVQAISA-RGKIRIRTWQYS-DGQVAVSIEDNGCGIDPELLKKIFDPFFTTKA------KGTGLGLAL 571 (607)
T ss_pred HHHHHHHHHHHHHHHHhcC-CCeEEEEEEEcC-CCEEEEEEEeCCCCCCHHHHhhhcCCceeCCC------CCCchhHHH
Confidence 3667899999999998532 335566654432 12278999999999999999988876665442 134666642
Q ss_pred ---cccccCCeEEEEeee
Q 004945 232 ---STMRLGADVIVFSCC 246 (722)
Q Consensus 232 ---AsmrLG~~v~V~SR~ 246 (722)
..-.+|.++.|.+..
T Consensus 572 ~~~~~~~~~G~i~~~s~~ 589 (607)
T PRK11360 572 SQRIINAHGGDIEVESEP 589 (607)
T ss_pred HHHHHHHcCCEEEEEEcC
Confidence 233578888887765
No 57
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=96.27 E-value=0.0027 Score=76.64 Aligned_cols=121 Identities=24% Similarity=0.295 Sum_probs=77.5
Q ss_pred CCCCCCCCCccccCCCcceeeecch-hhhcccccccCHHHHHHHhhhcchhhhhcC-CceeEEEEEEccCCCceeEEEEE
Q 004945 117 DYEGAPSGGWEFSTGGMDHVRVHPK-FLHSNATSHKWALGAFAELLDNSLDEVCNG-ATYSNIDMLINRKDGSRMLLIED 194 (722)
Q Consensus 117 ~y~~~~~~~~~~~~~~~~~~~v~p~-fLhSnstsh~~~fsAIAELIDNSiDA~~~g-At~V~IdI~~~~~~g~~~I~I~D 194 (722)
+|+....... .++++|+.-|- |+-+-.. .-+.--|.|+||||+|...++ ++.|.|.|.. ...|+|.|
T Consensus 99 ~Y~a~~I~vL----eGLEaVRkRPGMYIGst~~--~GLhhLv~EIlDNSVDE~laG~~~~I~V~i~~-----DgsItV~D 167 (903)
T PTZ00109 99 EYDADDIVVL----EGLEAVRKRPGMYIGNTDE--KGLHQLLFEILDNSVDEYLAGECNKITVVLHK-----DGSVEISD 167 (903)
T ss_pred CCChHhCeeh----hccHHHhcCCCceeCCCCC--CcceEEEEEEeeccchhhccCCCcEEEEEEcC-----CCeEEEEe
Confidence 5887765443 57889998886 5433221 222234679999999976655 7777776643 24799999
Q ss_pred cCCCCCHHHHHh--------hhh-ccccccccC-------------------------------------------Cccc
Q 004945 195 NGGGMNPDKMRH--------CMS-LGYSAKSKA-------------------------------------------ANTI 222 (722)
Q Consensus 195 NG~GMs~eeL~~--------~l~-~G~SsK~r~-------------------------------------------~~~I 222 (722)
||.||+-+.-.+ +|. +....|..+ .-.-
T Consensus 168 nGRGIPvd~h~k~g~s~~E~VlT~LhAGGKF~~~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~~~~~YkvSG 247 (903)
T PTZ00109 168 NGRGIPCDVSEKTGKSGLETVLTVLHSGGKFQDTFPKNSRSDKSEDKNDTKSSKKGKSSHVKGPKEAKEKESSQMYEYSS 247 (903)
T ss_pred CCccccccccccCCCcceeEEEEEeccCccccCcccccccccccccccccccccccccccccccccccccccCCcceecC
Confidence 999998743221 121 111111100 1256
Q ss_pred CcccccccccccccCCeEEEEeeecCC
Q 004945 223 GQYGNGFKTSTMRLGADVIVFSCCCGK 249 (722)
Q Consensus 223 GrfGvGfKsAsmrLG~~v~V~SR~~g~ 249 (722)
|..|+|.+.+- .|...+.|.+++.|.
T Consensus 248 GLHGVG~SVVN-ALS~~l~VeV~RdGK 273 (903)
T PTZ00109 248 GLHGVGLSVVN-ALSSFLKVDVFKGGK 273 (903)
T ss_pred cCCCcceeeee-eccCeEEEEEEECCE
Confidence 89999986544 599999999998653
No 58
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=96.25 E-value=0.012 Score=61.82 Aligned_cols=89 Identities=16% Similarity=0.132 Sum_probs=59.1
Q ss_pred CHHHHHHHhhhcchhhhhcCCceeEEEEEEcc----CCC----ceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccC
Q 004945 152 WALGAFAELLDNSLDEVCNGATYSNIDMLINR----KDG----SRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIG 223 (722)
Q Consensus 152 ~~fsAIAELIDNSiDA~~~gAt~V~IdI~~~~----~~g----~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~~IG 223 (722)
.+..++..||+||+.+.......|.|.+.... .++ ...|.|.|||.||+++.+.+.+..+++.+. +
T Consensus 237 ~l~~vl~nLl~NA~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF~~~~~~~~------~ 310 (348)
T PRK11073 237 QIEQVLLNIVRNALQALGPEGGTITLRTRTAFQLTLHGERYRLAARIDIEDNGPGIPPHLQDTLFYPMVSGRE------G 310 (348)
T ss_pred HHHHHHHHHHHHHHHHhccCCCeEEEEEccccccccCCccCCceEEEEEEeCCCCCCHHHHhhccCCcccCCC------C
Confidence 46788999999999985223444555442210 001 236899999999999999988876665542 2
Q ss_pred ccccccc---ccccccCCeEEEEeee
Q 004945 224 QYGNGFK---TSTMRLGADVIVFSCC 246 (722)
Q Consensus 224 rfGvGfK---sAsmrLG~~v~V~SR~ 246 (722)
--|+||. ...-..|..+.|.+..
T Consensus 311 g~GlGL~i~~~iv~~~gG~i~~~s~~ 336 (348)
T PRK11073 311 GTGLGLSIARNLIDQHSGKIEFTSWP 336 (348)
T ss_pred CccCCHHHHHHHHHHcCCeEEEEecC
Confidence 3477764 3344578888888764
No 59
>PRK10337 sensor protein QseC; Provisional
Probab=96.18 E-value=0.012 Score=64.12 Aligned_cols=85 Identities=18% Similarity=0.192 Sum_probs=58.0
Q ss_pred CHHHHHHHhhhcchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCcccccccc
Q 004945 152 WALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKT 231 (722)
Q Consensus 152 ~~fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~~IGrfGvGfKs 231 (722)
.+..++.+||+||+.+.. ....|.|.+.. ..|+|.|||.||+++++.+.+...+..+ ....+.+|+|+..
T Consensus 352 ~l~~vl~Nli~NA~k~~~-~~~~i~i~~~~------~~i~i~D~G~Gi~~~~~~~if~~f~~~~---~~~~~g~GlGL~i 421 (449)
T PRK10337 352 LLSLLVRNLLDNAIRYSP-QGSVVDVTLNA------RNFTVRDNGPGVTPEALARIGERFYRPP---GQEATGSGLGLSI 421 (449)
T ss_pred HHHHHHHHHHHHHHhhCC-CCCeEEEEEEe------eEEEEEECCCCCCHHHHHHhcccccCCC---CCCCCccchHHHH
Confidence 456688999999999832 12345554432 3699999999999999999887544332 1223457888753
Q ss_pred ---cccccCCeEEEEeee
Q 004945 232 ---STMRLGADVIVFSCC 246 (722)
Q Consensus 232 ---AsmrLG~~v~V~SR~ 246 (722)
.....|.++.+.+..
T Consensus 422 v~~i~~~~gg~l~~~s~~ 439 (449)
T PRK10337 422 VRRIAKLHGMNVSFGNAP 439 (449)
T ss_pred HHHHHHHcCCEEEEEecC
Confidence 234578888887764
No 60
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=95.92 E-value=0.0065 Score=71.18 Aligned_cols=84 Identities=20% Similarity=0.254 Sum_probs=57.0
Q ss_pred HHHhhhcchhhhhc---C-CceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHh-----------hhh-ccccccccC--
Q 004945 157 FAELLDNSLDEVCN---G-ATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRH-----------CMS-LGYSAKSKA-- 218 (722)
Q Consensus 157 IAELIDNSiDA~~~---g-At~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~-----------~l~-~G~SsK~r~-- 218 (722)
+.|+||||+|...+ + ++.|.|.|. ...|+|.|||.||+-+.-.+ .|. +....|..+
T Consensus 50 ~~EIldNavDe~~~~~~g~~~~I~V~i~------dgsisV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~LhaGgkFd~~y 123 (602)
T PHA02569 50 IDEIIDNSVDEAIRTNFKFANKIDVTIK------NNQVTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTRTKAGSNFDDTN 123 (602)
T ss_pred eehhhhhhhhhhhccCCCCCcEEEEEEc------CCEEEEEECCCcccCCcccccccccccceEEEEEeeccccccCCcc
Confidence 57999999998655 3 777777774 24799999999998643311 122 333444421
Q ss_pred CcccCcccccccccccccCCeEEEEeeec
Q 004945 219 ANTIGQYGNGFKTSTMRLGADVIVFSCCC 247 (722)
Q Consensus 219 ~~~IGrfGvGfKsAsmrLG~~v~V~SR~~ 247 (722)
.-.-|+.|+|.+.+- .|...+.|.++..
T Consensus 124 kvSGGlhGVG~svvN-aLS~~~~V~v~~~ 151 (602)
T PHA02569 124 RVTGGMNGVGSSLTN-FFSVLFIGETCDG 151 (602)
T ss_pred eeeCCcCCccceeee-ccchhhheEEEcC
Confidence 235799999987554 4888888887654
No 61
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=95.92 E-value=0.018 Score=68.57 Aligned_cols=88 Identities=16% Similarity=0.232 Sum_probs=62.1
Q ss_pred cCHHHHHHHhhhcchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCccccccc
Q 004945 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (722)
Q Consensus 151 ~~~fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~~IGrfGvGfK 230 (722)
..+..+|..||+||+.+. ....|.|.+... ++.-.|.|.|||.||+++++.+.+...+..+. ..+..|+||.
T Consensus 512 ~~l~~il~NLl~NAik~~--~~g~I~i~~~~~--~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~----~~~g~GLGL~ 583 (921)
T PRK15347 512 LRLRQILVNLLGNAVKFT--ETGGIRLRVKRH--EQQLCFTVEDTGCGIDIQQQQQIFTPFYQADT----HSQGTGLGLT 583 (921)
T ss_pred HHHHHHHHHHHHHHhhcC--CCCCEEEEEEEc--CCEEEEEEEEcCCCCCHHHHHHHhcCcccCCC----CCCCCchHHH
Confidence 346778999999999984 234566666543 35567999999999999999998875444321 2345688875
Q ss_pred cc---ccccCCeEEEEeee
Q 004945 231 TS---TMRLGADVIVFSCC 246 (722)
Q Consensus 231 sA---smrLG~~v~V~SR~ 246 (722)
.+ .-.+|..+.|.|..
T Consensus 584 i~~~~~~~~gG~i~i~s~~ 602 (921)
T PRK15347 584 IASSLAKMMGGELTLFSTP 602 (921)
T ss_pred HHHHHHHHcCCEEEEEecC
Confidence 32 33467788887765
No 62
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=95.83 E-value=0.022 Score=67.31 Aligned_cols=93 Identities=16% Similarity=0.211 Sum_probs=64.5
Q ss_pred cCHHHHHHHhhhcchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhcccccccc-CCcccCcccccc
Q 004945 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSK-AANTIGQYGNGF 229 (722)
Q Consensus 151 ~~~fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r-~~~~IGrfGvGf 229 (722)
..+..+|..||+||+++. ....|.|.+.... ++.-.|.|.|||.||+++++.+.|...++.|.. .....+.-|+|+
T Consensus 397 ~~l~qvl~NLl~NAik~~--~~g~v~i~~~~~~-~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~~~~~~~~GtGLGL 473 (779)
T PRK11091 397 TRLRQILWNLISNAVKFT--QQGGVTVRVRYEE-GDMLTFEVEDSGIGIPEDELDKIFAMYYQVKDSHGGKPATGTGIGL 473 (779)
T ss_pred HHHHHHHHHHHHHHHHhC--CCCcEEEEEEEcc-CCEEEEEEEecCCCCCHHHHHHHHHHhhcccCCCCCCCCCCcchHH
Confidence 346678999999999984 3445666665432 344679999999999999999998755554321 122245567887
Q ss_pred cc---cccccCCeEEEEeee
Q 004945 230 KT---STMRLGADVIVFSCC 246 (722)
Q Consensus 230 Ks---AsmrLG~~v~V~SR~ 246 (722)
.. ..-.+|..+.|.|..
T Consensus 474 ~i~~~iv~~~gG~i~v~s~~ 493 (779)
T PRK11091 474 AVSKRLAQAMGGDITVTSEE 493 (779)
T ss_pred HHHHHHHHHcCCEEEEEecC
Confidence 42 234578899998875
No 63
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=95.75 E-value=0.026 Score=67.59 Aligned_cols=89 Identities=18% Similarity=0.230 Sum_probs=62.9
Q ss_pred cCHHHHHHHhhhcchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCccccccc
Q 004945 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (722)
Q Consensus 151 ~~~fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~~IGrfGvGfK 230 (722)
..+..+|..||+||+.+. ....|.|.+..+ ++.-.|.|.|||.||+++++.+.+...+..+ ...|..|+|+.
T Consensus 560 ~~l~qil~NLl~NAik~~--~~g~I~i~~~~~--~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~----~~~~g~GLGL~ 631 (914)
T PRK11466 560 RRIRQVITNLLSNALRFT--DEGSIVLRSRTD--GEQWLVEVEDSGCGIDPAKLAEIFQPFVQVS----GKRGGTGLGLT 631 (914)
T ss_pred HHHHHHHHHHHHHHHHhC--CCCeEEEEEEEc--CCEEEEEEEECCCCCCHHHHHHHhchhhcCC----CCCCCCcccHH
Confidence 446678999999999984 344566666443 3456799999999999999999887544322 12356788875
Q ss_pred cc---ccccCCeEEEEeeec
Q 004945 231 TS---TMRLGADVIVFSCCC 247 (722)
Q Consensus 231 sA---smrLG~~v~V~SR~~ 247 (722)
.+ .-.+|.++.|.|...
T Consensus 632 i~~~l~~~~gG~i~v~s~~~ 651 (914)
T PRK11466 632 ISSRLAQAMGGELSATSTPE 651 (914)
T ss_pred HHHHHHHHcCCEEEEEecCC
Confidence 32 345788899888753
No 64
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=95.74 E-value=0.024 Score=67.46 Aligned_cols=94 Identities=15% Similarity=0.132 Sum_probs=60.2
Q ss_pred CHHHHHHHhhhcchhhhhcCCceeEEEEEEccC-CC--ceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCccccc
Q 004945 152 WALGAFAELLDNSLDEVCNGATYSNIDMLINRK-DG--SRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNG 228 (722)
Q Consensus 152 ~~fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~-~g--~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~~IGrfGvG 228 (722)
.+..+|..||+||+.+.. ...|.|.+..... .+ .-.|.|.|||.||+++++.+.+...+..........|..|+|
T Consensus 408 ~l~~vl~NLl~NAik~~~--~g~v~i~v~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GLG 485 (919)
T PRK11107 408 RLQQIITNLVGNAIKFTE--SGNIDILVELRALSNTKVQLEVQIRDTGIGISERQQSQLFQAFRQADASISRRHGGTGLG 485 (919)
T ss_pred HHHHHHHHHHHHHhhcCC--CCcEEEEEEEEecCCCeeEEEEEEEEeCCCcCHHHHHHHhhhhccCCCCCCCCCCCcchh
Confidence 356789999999999843 3345554433211 11 246899999999999999998864332211111234567888
Q ss_pred ccc---cccccCCeEEEEeeec
Q 004945 229 FKT---STMRLGADVIVFSCCC 247 (722)
Q Consensus 229 fKs---AsmrLG~~v~V~SR~~ 247 (722)
|.. ..-.+|.++.|.|...
T Consensus 486 L~i~~~i~~~~gG~i~v~s~~~ 507 (919)
T PRK11107 486 LVITQKLVNEMGGDISFHSQPN 507 (919)
T ss_pred HHHHHHHHHHhCCEEEEEecCC
Confidence 742 2345788899988753
No 65
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=95.67 E-value=0.018 Score=66.77 Aligned_cols=62 Identities=24% Similarity=0.395 Sum_probs=47.4
Q ss_pred CHHHHHHHhhhcchhhhhcC-CceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhcccccc
Q 004945 152 WALGAFAELLDNSLDEVCNG-ATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAK 215 (722)
Q Consensus 152 ~~fsAIAELIDNSiDA~~~g-At~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK 215 (722)
-+...|-.||.||+||.... ...|+|.... .++.-.|.|.|||+|+.++-+.+.|.+-+++|
T Consensus 497 RLeQVLvNLl~NALDA~~~~~~~~i~i~~~~--~~~~v~l~VrDnGpGi~~e~~~~lFePF~TtK 559 (603)
T COG4191 497 RLEQVLVNLLQNALDAMAGQEDRRLSIRAQR--EGGQVVLTVRDNGPGIAPEALPHLFEPFFTTK 559 (603)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCeeEEEEEe--cCCeEEEEEccCCCCCCHHHHHhhcCCccccC
Confidence 45578899999999997522 2345555544 35677899999999999999999998666665
No 66
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=95.55 E-value=0.032 Score=67.09 Aligned_cols=90 Identities=17% Similarity=0.170 Sum_probs=62.9
Q ss_pred cCHHHHHHHhhhcchhhhhcCCceeEEEEEEccCCCc-eeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCcccccc
Q 004945 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGS-RMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGF 229 (722)
Q Consensus 151 ~~~fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g~-~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~~IGrfGvGf 229 (722)
..+..+|..||+||+.+. ....|.|.+.... +. -.|.|.|+|.||+++++.+.|..-++.+ ....-|..|+||
T Consensus 578 ~~l~~il~nLi~NAik~~--~~g~i~i~~~~~~--~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~--~~~~~~g~GLGL 651 (968)
T TIGR02956 578 PRIRQVLINLVGNAIKFT--DRGSVVLRVSLND--DSSLLFEVEDTGCGIAEEEQATLFDAFTQAD--GRRRSGGTGLGL 651 (968)
T ss_pred HHHHHHHHHHHHHHHhhC--CCCeEEEEEEEcC--CCeEEEEEEeCCCCCCHHHHHHHHhhhhccC--CCCCCCCccHHH
Confidence 456678999999999984 3445677665443 33 6799999999999999999886433322 122335668887
Q ss_pred ccc---ccccCCeEEEEeee
Q 004945 230 KTS---TMRLGADVIVFSCC 246 (722)
Q Consensus 230 KsA---smrLG~~v~V~SR~ 246 (722)
..+ .-.+|.++.|.|..
T Consensus 652 ~i~~~l~~~~gG~i~~~s~~ 671 (968)
T TIGR02956 652 AISQRLVEAMDGELGVESEL 671 (968)
T ss_pred HHHHHHHHHcCCEEEEEecC
Confidence 532 34577888888765
No 67
>PLN03128 DNA topoisomerase 2; Provisional
Probab=95.53 E-value=0.018 Score=71.78 Aligned_cols=87 Identities=20% Similarity=0.252 Sum_probs=59.7
Q ss_pred HHHHHHhhhcchhhhh--cCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHh--------hhh-ccccccccCC---
Q 004945 154 LGAFAELLDNSLDEVC--NGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRH--------CMS-LGYSAKSKAA--- 219 (722)
Q Consensus 154 fsAIAELIDNSiDA~~--~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~--------~l~-~G~SsK~r~~--- 219 (722)
.--+-|+||||+|... ..++.|.|.|.. ....|+|.|||.||+-+--.+ +|. +.+++|..+.
T Consensus 54 ~ki~dEIldNAvDe~~~~g~~~~I~V~i~~----~dgsIsV~DnGrGIPv~ih~~~g~~~~ElIft~LhaGgkFdd~~yk 129 (1135)
T PLN03128 54 YKIFDEILVNAADNKQRDPSMDSLKVDIDV----EQNTISVYNNGKGIPVEIHKEEGVYVPELIFGHLLTSSNFDDNEKK 129 (1135)
T ss_pred HHHHHHHHHHHHHHhhhcCCCcEEEEEEEc----CCCeEEEEecCccccCCCCCCCCCccceEEEEeeccccccCCccce
Confidence 3458999999999752 235777777743 235899999999998752211 122 3444554322
Q ss_pred cccCcccccccccccccCCeEEEEee
Q 004945 220 NTIGQYGNGFKTSTMRLGADVIVFSC 245 (722)
Q Consensus 220 ~~IGrfGvGfKsAsmrLG~~v~V~SR 245 (722)
-.-|+.|+|.+.+- .+...+.|.++
T Consensus 130 vSGGlhGvGasvvN-aLS~~f~Vev~ 154 (1135)
T PLN03128 130 TTGGRNGYGAKLAN-IFSTEFTVETA 154 (1135)
T ss_pred eeccccCCCCeEEE-eecCeEEEEEE
Confidence 36799999987655 48899999998
No 68
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=95.48 E-value=0.037 Score=67.73 Aligned_cols=92 Identities=12% Similarity=0.120 Sum_probs=62.7
Q ss_pred cCHHHHHHHhhhcchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCccccccc
Q 004945 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (722)
Q Consensus 151 ~~~fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~~IGrfGvGfK 230 (722)
..+..+|..||+||+.+.. ...|.|.+... ++.-.|.|.|+|.||+++++.+.+...+..+.......+-.|+||.
T Consensus 561 ~~L~qvl~NLl~NAik~t~--~G~I~I~v~~~--~~~l~i~V~DtG~GI~~e~~~~lFepF~~~~~~~~~~~~GtGLGL~ 636 (924)
T PRK10841 561 MRLQQVISNLLSNAIKFTD--TGCIVLHVRVD--GDYLSFRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLA 636 (924)
T ss_pred HHHHHHHHHHHHHHHhhCC--CCcEEEEEEEe--CCEEEEEEEEcCcCCCHHHHHHHhcccccCCCCCCCCCCCeehhHH
Confidence 3466789999999999842 34566665442 3456799999999999999999887444322111122345688875
Q ss_pred cc---ccccCCeEEEEeee
Q 004945 231 TS---TMRLGADVIVFSCC 246 (722)
Q Consensus 231 sA---smrLG~~v~V~SR~ 246 (722)
.+ .-.+|.++.|.|..
T Consensus 637 I~k~lv~~~gG~I~v~S~~ 655 (924)
T PRK10841 637 ICEKLINMMDGDISVDSEP 655 (924)
T ss_pred HHHHHHHHCCCEEEEEEcC
Confidence 33 34578889988875
No 69
>PRK10490 sensor protein KdpD; Provisional
Probab=95.48 E-value=0.031 Score=68.23 Aligned_cols=92 Identities=16% Similarity=0.123 Sum_probs=63.0
Q ss_pred cCHHHHHHHhhhcchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCccccccc
Q 004945 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (722)
Q Consensus 151 ~~~fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~~IGrfGvGfK 230 (722)
..+..+|..||+||+.+.. ....|.|.+... ++.-.|.|.|||.||+++++.+.|...++.+. ....+-.|+||.
T Consensus 777 ~~L~qVL~NLL~NAik~s~-~g~~I~I~~~~~--~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~--~~~~~G~GLGL~ 851 (895)
T PRK10490 777 PLFERVLINLLENAVKYAG-AQAEIGIDAHVE--GERLQLDVWDNGPGIPPGQEQLIFDKFARGNK--ESAIPGVGLGLA 851 (895)
T ss_pred HHHHHHHHHHHHHHHHhCC-CCCeEEEEEEEe--CCEEEEEEEECCCCCCHHHHHHhcCCCccCCC--CCCCCCccHHHH
Confidence 3467889999999999842 234566665433 35567999999999999999999875554332 112234678875
Q ss_pred c---cccccCCeEEEEeeec
Q 004945 231 T---STMRLGADVIVFSCCC 247 (722)
Q Consensus 231 s---AsmrLG~~v~V~SR~~ 247 (722)
. ..-.+|-++.+.+...
T Consensus 852 Ivk~ive~hGG~I~v~s~~~ 871 (895)
T PRK10490 852 ICRAIVEVHGGTIWAENRPE 871 (895)
T ss_pred HHHHHHHHcCCEEEEEECCC
Confidence 3 2334788888888653
No 70
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=95.38 E-value=0.047 Score=66.79 Aligned_cols=94 Identities=12% Similarity=0.039 Sum_probs=62.6
Q ss_pred cCHHHHHHHhhhcchhhhhcCCceeEEEEEEccC-CCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCcccccc
Q 004945 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRK-DGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGF 229 (722)
Q Consensus 151 ~~~fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~-~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~~IGrfGvGf 229 (722)
..+..+|..||.||+.+.. ...|.|.+..... ++.-.|.|.|+|.||+++++.+.+..-++.+... ..-+-.|+||
T Consensus 564 ~~L~QVL~NLL~NAik~t~--~G~I~I~v~~~~~~~~~l~I~V~DtG~GI~~e~l~~IFePF~t~~~~~-~~~~GtGLGL 640 (894)
T PRK10618 564 DALRKILLLLLNYAITTTA--YGKITLEVDQDESSPDRLTIRILDTGAGVSIKELDNLHFPFLNQTQGD-RYGKASGLTF 640 (894)
T ss_pred HHHHHHHHHHHHHHHHhCC--CCeEEEEEEEccCCCcEEEEEEEECCCCCCHHHHHHhcCccccCCCCC-CCCCCcChhH
Confidence 3456789999999999843 3456666644322 2345799999999999999999987444433211 1123457776
Q ss_pred cc---cccccCCeEEEEeeec
Q 004945 230 KT---STMRLGADVIVFSCCC 247 (722)
Q Consensus 230 Ks---AsmrLG~~v~V~SR~~ 247 (722)
.. ..-.+|..+.|.|...
T Consensus 641 aI~k~Lve~~GG~I~v~S~~g 661 (894)
T PRK10618 641 FLCNQLCRKLGGHLTIKSREG 661 (894)
T ss_pred HHHHHHHHHcCCEEEEEECCC
Confidence 42 2345889999998753
No 71
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=95.24 E-value=0.029 Score=54.60 Aligned_cols=87 Identities=17% Similarity=0.185 Sum_probs=54.1
Q ss_pred HHHHHHHhhhcchhhhhcCC--ceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCccccccc
Q 004945 153 ALGAFAELLDNSLDEVCNGA--TYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (722)
Q Consensus 153 ~fsAIAELIDNSiDA~~~gA--t~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~~IGrfGvGfK 230 (722)
+--|+.|++-||+..-..+. ..|.|.+... ++.-.|.|.|+|.||+++.+...+.+.+..+. ......-|+|+.
T Consensus 43 l~lav~Ea~~Nai~Hg~~~~~~~~I~I~~~~~--~~~l~i~V~D~G~g~d~~~~~~~~~p~~~~~~--~~~~~~~G~GL~ 118 (161)
T PRK04069 43 MKIAVSEACTNAVQHAYKEDEVGEIHIRFEIY--EDRLEIVVADNGVSFDYETLKSKLGPYDISKP--IEDLREGGLGLF 118 (161)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCeEEEEEEEE--CCEEEEEEEECCcCCChHHhccccCCCCCCCc--ccccCCCceeHH
Confidence 44689999999998732221 2455555443 46788999999999999888776654332211 111112367765
Q ss_pred ccccccCCeEEEEe
Q 004945 231 TSTMRLGADVIVFS 244 (722)
Q Consensus 231 sAsmrLG~~v~V~S 244 (722)
..- .+.+++.+.+
T Consensus 119 li~-~l~d~v~~~~ 131 (161)
T PRK04069 119 LIE-TLMDDVTVYK 131 (161)
T ss_pred HHH-HHHHhEEEEc
Confidence 444 3667777664
No 72
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=95.22 E-value=0.067 Score=49.68 Aligned_cols=85 Identities=22% Similarity=0.228 Sum_probs=52.0
Q ss_pred HHHHHHHhhhcchhhh-h-cCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCccccccc
Q 004945 153 ALGAFAELLDNSLDEV-C-NGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (722)
Q Consensus 153 ~fsAIAELIDNSiDA~-~-~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~~IGrfGvGfK 230 (722)
+-.|+.||+.||+.+. . .....|.|.+... ++.-.|.|.|+|.||+. +.+.+...++.+. ..+..|+|+.
T Consensus 40 l~~~l~eli~Nai~h~~~~~~~~~I~v~~~~~--~~~~~i~I~D~G~gi~~--~~~~~~~~~~~~~----~~~~~GlGL~ 111 (137)
T TIGR01925 40 IKTAVSEAVTNAIIHGYEENCEGVVYISATIE--DHEVYITVRDEGIGIEN--LEEAREPLYTSKP----ELERSGMGFT 111 (137)
T ss_pred HHHHHHHHHHHHHHhccCCCCCcEEEEEEEEe--CCEEEEEEEEcCCCcCc--hhHhhCCCcccCC----CCCCCcccHH
Confidence 4468999999999741 1 1134566666543 34567999999999973 4445543333321 2234677875
Q ss_pred ccccccCCeEEEEeee
Q 004945 231 TSTMRLGADVIVFSCC 246 (722)
Q Consensus 231 sAsmrLG~~v~V~SR~ 246 (722)
... +++.++.+.+..
T Consensus 112 lv~-~~~~~l~~~~~~ 126 (137)
T TIGR01925 112 VME-NFMDDVSVDSEK 126 (137)
T ss_pred HHH-HhCCcEEEEECC
Confidence 433 456677776653
No 73
>PRK10547 chemotaxis protein CheA; Provisional
Probab=95.14 E-value=0.081 Score=62.95 Aligned_cols=90 Identities=19% Similarity=0.337 Sum_probs=59.8
Q ss_pred HHHHHHhhhcchhhhhc-----------CCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHh----------------
Q 004945 154 LGAFAELLDNSLDEVCN-----------GATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRH---------------- 206 (722)
Q Consensus 154 fsAIAELIDNSiDA~~~-----------gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~---------------- 206 (722)
..+|..||.||+|+-.. ....|.|..... ++.-.|.|.|||.||+++.+..
T Consensus 387 ~dpL~hLirNAidHgie~p~~R~~~gkp~~G~I~l~a~~~--~~~v~I~V~DdG~GId~e~i~~~a~~~Gl~~~~~ls~~ 464 (670)
T PRK10547 387 IDPLTHLVRNSLDHGIELPEKRLAAGKNSVGNLILSAEHQ--GGNICIEVTDDGAGLNRERILAKAASQGLAVSENMSDE 464 (670)
T ss_pred HHHHHHHHHHHHHhhccchhhHHhcCCCCCCceEEEEEEc--CCEEEEEEEeCCCCCCHHHHHHHHHHcCCCccccCCHH
Confidence 34467899999997311 112455655432 3556799999999999987752
Q ss_pred -----hhhccccccccCCcccCccccccc---ccccccCCeEEEEeee
Q 004945 207 -----CMSLGYSAKSKAANTIGQYGNGFK---TSTMRLGADVIVFSCC 246 (722)
Q Consensus 207 -----~l~~G~SsK~r~~~~IGrfGvGfK---sAsmrLG~~v~V~SR~ 246 (722)
.|..|++.+.. ...+.-.|+||. ...-.++..+.|.|..
T Consensus 465 e~~~lIF~pgfst~~~-~~~~sGrGvGL~iVk~~ve~lgG~I~v~S~~ 511 (670)
T PRK10547 465 EVGMLIFAPGFSTAEQ-VTDVSGRGVGMDVVKRNIQEMGGHVEIQSKQ 511 (670)
T ss_pred HHHHHhhcCCcccccc-cccCCCCchhHHHHHHHHHHcCCEEEEEecC
Confidence 34557776532 234455699984 3445689999999975
No 74
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=95.00 E-value=0.05 Score=53.09 Aligned_cols=87 Identities=15% Similarity=0.203 Sum_probs=55.5
Q ss_pred HHHHHHHhhhcchhhhhcC--CceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCccccccc
Q 004945 153 ALGAFAELLDNSLDEVCNG--ATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (722)
Q Consensus 153 ~fsAIAELIDNSiDA~~~g--At~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~~IGrfGvGfK 230 (722)
+--|+.|++.||+...-.+ ...|.|.+... ++.-.|.|.|+|.|++++.+...+....... .......-|.||.
T Consensus 43 l~lav~Ea~~Nai~ha~~~~~~~~I~I~~~~~--~~~l~i~V~D~G~gfd~~~~~~~~~~~~~~~--~~~~~~~~G~GL~ 118 (159)
T TIGR01924 43 LKIAVSEACTNAVKHAYKEGENGEIGISFHIY--EDRLEIIVSDQGDSFDMDTFKQSLGPYDGSE--PIDDLREGGLGLF 118 (159)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCeEEEEEEEe--CCEEEEEEEEcccccCchhhccccCCCCCCC--CcccCCCCccCHH
Confidence 4558999999999873211 23566666543 4567899999999999988775443211111 1111223478876
Q ss_pred ccccccCCeEEEEe
Q 004945 231 TSTMRLGADVIVFS 244 (722)
Q Consensus 231 sAsmrLG~~v~V~S 244 (722)
..- ++.+++.+..
T Consensus 119 Li~-~L~D~v~~~~ 131 (159)
T TIGR01924 119 LIE-TLMDEVEVYE 131 (159)
T ss_pred HHH-HhccEEEEEe
Confidence 554 5788888765
No 75
>PRK13557 histidine kinase; Provisional
Probab=94.89 E-value=0.077 Score=58.54 Aligned_cols=90 Identities=20% Similarity=0.191 Sum_probs=60.2
Q ss_pred CHHHHHHHhhhcchhhhhcCCceeEEEEEEc-------------cCCCceeEEEEEcCCCCCHHHHHhhhhccccccccC
Q 004945 152 WALGAFAELLDNSLDEVCNGATYSNIDMLIN-------------RKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKA 218 (722)
Q Consensus 152 ~~fsAIAELIDNSiDA~~~gAt~V~IdI~~~-------------~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~ 218 (722)
.+..++..||.||+++... ...+.|..... ..++.-.|.|.|||.||+++.+.+.+...++.+.
T Consensus 277 ~l~~vl~nll~NA~~~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~if~~~~~~~~-- 353 (540)
T PRK13557 277 QAEVALLNVLINARDAMPE-GGRVTIRTRNVEIEDEDLAMYHGLPPGRYVSIAVTDTGSGMPPEILARVMDPFFTTKE-- 353 (540)
T ss_pred HHHHHHHHHHHHHHHhccc-CCeEEEEEeeeccCccccccccCCCCCCEEEEEEEcCCCCCCHHHHHhccCCCcccCC--
Confidence 3566899999999998532 23344443211 0123346999999999999999999876665442
Q ss_pred CcccCccccccc---ccccccCCeEEEEeee
Q 004945 219 ANTIGQYGNGFK---TSTMRLGADVIVFSCC 246 (722)
Q Consensus 219 ~~~IGrfGvGfK---sAsmrLG~~v~V~SR~ 246 (722)
..+..|+||. ...-.+|..+.|.+..
T Consensus 354 --~~~g~GlGL~i~~~~v~~~gG~i~~~s~~ 382 (540)
T PRK13557 354 --EGKGTGLGLSMVYGFAKQSGGAVRIYSEV 382 (540)
T ss_pred --CCCCCCccHHHHHHHHHHCCCEEEEEecC
Confidence 2234577764 2344588899998875
No 76
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=94.83 E-value=0.073 Score=65.95 Aligned_cols=92 Identities=14% Similarity=0.156 Sum_probs=59.9
Q ss_pred cCHHHHHHHhhhcchhhhhcCCceeEEEEEE---ccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCcccc
Q 004945 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLI---NRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGN 227 (722)
Q Consensus 151 ~~~fsAIAELIDNSiDA~~~gAt~V~IdI~~---~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~~IGrfGv 227 (722)
..+..+|..||+||+++... ..+.|.+.. ......-.|.|.|||.||+++++.+.+...++.+. ...-+..|+
T Consensus 827 ~~l~qvl~NLl~NAik~~~~--g~i~i~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~--~~~~~G~GL 902 (1197)
T PRK09959 827 QAFKQVLSNLLSNALKFTTE--GAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQTSA--GRQQTGSGL 902 (1197)
T ss_pred HHHHHHHHHHHHHHHHhCCC--CCEEEEEEEeeecCCceEEEEEEEEcCCCCCHHHHHHhhcccccccc--CCCCCCcCc
Confidence 34677899999999998532 233444321 11112235889999999999999999875444332 112245688
Q ss_pred ccccc---ccccCCeEEEEeee
Q 004945 228 GFKTS---TMRLGADVIVFSCC 246 (722)
Q Consensus 228 GfKsA---smrLG~~v~V~SR~ 246 (722)
||..+ .-.+|.++.|.+..
T Consensus 903 GL~i~~~iv~~~gG~i~v~s~~ 924 (1197)
T PRK09959 903 GLMICKELIKNMQGDLSLESHP 924 (1197)
T ss_pred hHHHHHHHHHHcCCEEEEEeCC
Confidence 87532 33578889888875
No 77
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=94.45 E-value=0.06 Score=58.32 Aligned_cols=76 Identities=25% Similarity=0.339 Sum_probs=58.4
Q ss_pred ccCHHHHHHHhhhcchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCcccc-c
Q 004945 150 HKWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGN-G 228 (722)
Q Consensus 150 h~~~fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~~IGrfGv-G 228 (722)
...+|-++.|.|-|++-. ++|+.+.|.+..+. +.-+|.|.|||.|-+.+... |-||+ |
T Consensus 277 e~~l~rivQEaltN~~rH--a~A~~v~V~l~~~~--~~l~l~V~DnG~Gf~~~~~~-----------------~~~GL~~ 335 (365)
T COG4585 277 EDALFRIVQEALTNAIRH--AQATEVRVTLERTD--DELRLEVIDNGVGFDPDKEG-----------------GGFGLLG 335 (365)
T ss_pred HHHHHHHHHHHHHHHHhc--cCCceEEEEEEEcC--CEEEEEEEECCcCCCccccC-----------------CCcchhh
Confidence 355678899999999997 58999999887653 56889999999997665422 44554 5
Q ss_pred ccccccccCCeEEEEeee
Q 004945 229 FKTSTMRLGADVIVFSCC 246 (722)
Q Consensus 229 fKsAsmrLG~~v~V~SR~ 246 (722)
|+-=...+|..++|.|..
T Consensus 336 mreRv~~lgG~l~i~S~~ 353 (365)
T COG4585 336 MRERVEALGGTLTIDSAP 353 (365)
T ss_pred HHHHHHHcCCEEEEEecC
Confidence 555455699999999987
No 78
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=94.07 E-value=0.11 Score=47.48 Aligned_cols=81 Identities=17% Similarity=0.225 Sum_probs=53.4
Q ss_pred CHHHHHHHhhhcchhhhhcCC--ceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCcccccc
Q 004945 152 WALGAFAELLDNSLDEVCNGA--TYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGF 229 (722)
Q Consensus 152 ~~fsAIAELIDNSiDA~~~gA--t~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~~IGrfGvGf 229 (722)
.+.-|+.|++-||+.....+. ..|.|.+... .+.-.|.|.|+|.|+++..+........ .....-|.|+
T Consensus 31 ~~~lav~E~~~Nav~H~~~~~~~~~v~v~~~~~--~~~l~i~v~D~G~~~d~~~~~~~~~~~~-------~~~~~~G~Gl 101 (125)
T PF13581_consen 31 DLELAVSEALTNAVEHGYPGDPDGPVDVRLEVD--PDRLRISVRDNGPGFDPEQLPQPDPWEP-------DSLREGGRGL 101 (125)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCcEEEEEEEEc--CCEEEEEEEECCCCCChhhccCcccccC-------CCCCCCCcCH
Confidence 345699999999999843222 3455555444 3567899999999999987765432111 2223346776
Q ss_pred cccccccCCeEEE
Q 004945 230 KTSTMRLGADVIV 242 (722)
Q Consensus 230 KsAsmrLG~~v~V 242 (722)
.... .+++++.+
T Consensus 102 ~li~-~l~D~~~~ 113 (125)
T PF13581_consen 102 FLIR-SLMDEVDY 113 (125)
T ss_pred HHHH-HHHcEEEE
Confidence 5444 58899988
No 79
>PRK03660 anti-sigma F factor; Provisional
Probab=93.86 E-value=0.23 Score=46.45 Aligned_cols=85 Identities=20% Similarity=0.257 Sum_probs=50.8
Q ss_pred HHHHHHHhhhcchhhhhcC-C-ceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCccccccc
Q 004945 153 ALGAFAELLDNSLDEVCNG-A-TYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (722)
Q Consensus 153 ~fsAIAELIDNSiDA~~~g-A-t~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~~IGrfGvGfK 230 (722)
+.-++.|++.||+..-... . ..+.|.+... ++.-.|.|.|+|.||++ +...+...++.+. .-+.-|+|+.
T Consensus 40 l~~~l~eli~Nai~h~~~~~~~~~i~i~~~~~--~~~l~i~I~D~G~g~~~--~~~~~~~~~~~~~----~~~~~GlGL~ 111 (146)
T PRK03660 40 IKTAVSEAVTNAIIHGYENNPDGVVYIEVEIE--EEELEITVRDEGKGIED--IEEAMQPLYTTKP----ELERSGMGFT 111 (146)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEEEEEC--CCEEEEEEEEccCCCCh--HHHhhCCCcccCC----CCCCccccHH
Confidence 4568999999999642111 1 3456665443 34567999999999986 3344443333221 1123488876
Q ss_pred ccccccCCeEEEEeee
Q 004945 231 TSTMRLGADVIVFSCC 246 (722)
Q Consensus 231 sAsmrLG~~v~V~SR~ 246 (722)
.+. +++..+.+.+..
T Consensus 112 i~~-~~~~~i~~~~~~ 126 (146)
T PRK03660 112 VME-SFMDEVEVESEP 126 (146)
T ss_pred HHH-HhCCeEEEEecC
Confidence 543 467777766543
No 80
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=92.55 E-value=0.37 Score=57.99 Aligned_cols=92 Identities=22% Similarity=0.394 Sum_probs=62.2
Q ss_pred HHHHHhhhcchhhhh--------cCC-ceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHh-hhhc--------------
Q 004945 155 GAFAELLDNSLDEVC--------NGA-TYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRH-CMSL-------------- 210 (722)
Q Consensus 155 sAIAELIDNSiDA~~--------~gA-t~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~-~l~~-------------- 210 (722)
..|-.||-||+|.-. +|- ..=.|.+..-..++.-.|.|.|||.||+++.+.. ++.-
T Consensus 435 dPL~HLvRNAvDHGIE~pE~R~a~GKp~~G~I~L~A~~~gn~ivIev~DDG~Gid~ekI~~KAiErGli~~~~a~~lSd~ 514 (716)
T COG0643 435 DPLTHLVRNAVDHGIETPEERRAAGKPEEGTITLSAYHEGNNIVIEVSDDGAGIDREKIREKAIERGLITEEEAETLSDE 514 (716)
T ss_pred ccHHHHHhcchhccCCCHHHHHHcCCCCcceEEEEEEcCCCeEEEEEeeCCCCCCHHHHHHHHHHcCCCChHHhccCCHH
Confidence 446789999999621 111 1113444433445677899999999999988853 4433
Q ss_pred ---------cccccccCCcccCcccccc---cccccccCCeEEEEeeec
Q 004945 211 ---------GYSAKSKAANTIGQYGNGF---KTSTMRLGADVIVFSCCC 247 (722)
Q Consensus 211 ---------G~SsK~r~~~~IGrfGvGf---KsAsmrLG~~v~V~SR~~ 247 (722)
|+|.+. ..+.+.--|+|| |+..-+||-.+.|.|+..
T Consensus 515 Ei~~LIF~PGFSTa~-~VtdvSGRGVGMDVVk~~I~~LgG~I~V~S~~G 562 (716)
T COG0643 515 EILNLIFAPGFSTAE-QVTDVSGRGVGMDVVKTNIEQLGGSISVSSEPG 562 (716)
T ss_pred HHHHHHhcCCCCcch-hhhcccCCccCHHHHHHHHHHcCCEEEEEecCC
Confidence 344331 235676679998 778888999999999963
No 81
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=92.40 E-value=0.33 Score=54.19 Aligned_cols=90 Identities=20% Similarity=0.309 Sum_probs=62.3
Q ss_pred HHHHHhhhcchhhhhcC-------CceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhcccccccc---C---Ccc
Q 004945 155 GAFAELLDNSLDEVCNG-------ATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSK---A---ANT 221 (722)
Q Consensus 155 sAIAELIDNSiDA~~~g-------At~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r---~---~~~ 221 (722)
-.+-||..||+.|.... -..|.|.+..+ +....|.|.|-|+|++++++...+.+++|.-.. + ...
T Consensus 263 ymlfElfKNamrATve~h~~~~~~~ppI~V~V~~g--deDl~ikISDrGGGV~~~~~drlf~Y~ySTa~~~~~d~~~~~p 340 (414)
T KOG0787|consen 263 YMLFELFKNAMRATVEHHGDDGDELPPIKVTVAKG--DEDLLIKISDRGGGVPHRDIDRLFSYMYSTAPAPSSDNNRTAP 340 (414)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCeEEEEecC--CcceEEEEecCCCCcChhHHHHHHhhhcccCCCCCCCCCCcCc
Confidence 46899999999987521 22366666543 467789999999999999999999999886432 1 234
Q ss_pred cCccccccccc---ccccCCeEEEEeee
Q 004945 222 IGQYGNGFKTS---TMRLGADVIVFSCC 246 (722)
Q Consensus 222 IGrfGvGfKsA---smrLG~~v~V~SR~ 246 (722)
+--||-|+-.+ .=..|-++.+.|-.
T Consensus 341 laGfG~GLPisrlYa~yf~Gdl~L~Sle 368 (414)
T KOG0787|consen 341 LAGFGFGLPISRLYARYFGGDLKLQSLE 368 (414)
T ss_pred ccccccCCcHHHHHHHHhCCCeeEEeee
Confidence 55667776432 22356667777764
No 82
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=92.35 E-value=0.26 Score=59.55 Aligned_cols=88 Identities=15% Similarity=0.166 Sum_probs=57.4
Q ss_pred HHHHHHHhhhcchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhh-ccccccccCCcccCcccccccc
Q 004945 153 ALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMS-LGYSAKSKAANTIGQYGNGFKT 231 (722)
Q Consensus 153 ~fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~-~G~SsK~r~~~~IGrfGvGfKs 231 (722)
+..+|..|||||+...- ..++|.|..... .+.-++.|.|+|.|++++++.+.|. |-+-.|..+ ..--|+||.-
T Consensus 776 ieQVLiNLleNA~Kyap-~~s~I~I~~~~~--~~~v~~~V~DeGpGIP~~~~~~IFD~F~r~~~~~~---~~G~GLGLsI 849 (890)
T COG2205 776 IEQVLINLLENALKYAP-PGSEIRINAGVE--RENVVFSVIDEGPGIPEGELERIFDKFYRGNKESA---TRGVGLGLAI 849 (890)
T ss_pred HHHHHHHHHHHHHhhCC-CCCeEEEEEEEe--cceEEEEEEeCCCCCChhHHHHhhhhhhcCCCCCC---CCCccccHHH
Confidence 56789999999998721 234566666543 3567899999999999999999986 544444222 2223455432
Q ss_pred c---ccccCCeEEEEeee
Q 004945 232 S---TMRLGADVIVFSCC 246 (722)
Q Consensus 232 A---smrLG~~v~V~SR~ 246 (722)
+ .-..|..+.+..+.
T Consensus 850 c~~iv~ahgG~I~a~~~~ 867 (890)
T COG2205 850 CRGIVEAHGGTISAENNP 867 (890)
T ss_pred HHHHHHHcCCeEEEEEcC
Confidence 1 22356677777744
No 83
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=92.12 E-value=0.2 Score=57.22 Aligned_cols=70 Identities=26% Similarity=0.368 Sum_probs=49.3
Q ss_pred CHHHHHHHhhhcchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCcccccccc
Q 004945 152 WALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKT 231 (722)
Q Consensus 152 ~~fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~~IGrfGvGfKs 231 (722)
.+..++.|+|+||+.+. .+..|.|.+..+ ++.-.|.|.|||.||++++. ..|+|++.
T Consensus 410 ~L~ril~nlL~NAiKha--~~~~I~I~l~~~--~~~i~l~V~DnG~Gi~~~~~-------------------~~GLGL~i 466 (495)
T PRK11644 410 TLFRVCQEGLNNIVKHA--DASAVTLQGWQQ--DERLMLVIEDDGSGLPPGSG-------------------QQGFGLRG 466 (495)
T ss_pred HHHHHHHHHHHHHHHhC--CCCEEEEEEEEc--CCEEEEEEEECCCCCCcCCC-------------------CCCCcHHH
Confidence 35668899999999973 456677776543 34567999999999986531 12777643
Q ss_pred ---cccccCCeEEEEe
Q 004945 232 ---STMRLGADVIVFS 244 (722)
Q Consensus 232 ---AsmrLG~~v~V~S 244 (722)
-.-.+|.++.+.|
T Consensus 467 vr~iv~~~GG~i~v~S 482 (495)
T PRK11644 467 MRERVTALGGTLTISC 482 (495)
T ss_pred HHHHHHHcCCEEEEEc
Confidence 2335788888877
No 84
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=91.95 E-value=0.2 Score=57.45 Aligned_cols=75 Identities=21% Similarity=0.197 Sum_probs=52.5
Q ss_pred cCHHHHHHHhhhcchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCccccccc
Q 004945 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (722)
Q Consensus 151 ~~~fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~~IGrfGvGfK 230 (722)
.+++.+|.|+|.||+.+. .++.|.|.+... ++.-.|.|.|||.||+++.- + .-|+|+.
T Consensus 468 ~~l~~il~ell~NA~kha--~a~~i~V~~~~~--~~~~~l~V~D~G~Gi~~~~~----------~--------~~glGL~ 525 (569)
T PRK10600 468 IHLLQIAREALSNALKHA--QASEVVVTVAQN--QNQVKLSVQDNGCGVPENAE----------R--------SNHYGLI 525 (569)
T ss_pred HHHHHHHHHHHHHHHHhC--CCCeEEEEEEEc--CCEEEEEEEECCCCCCcccc----------C--------CCCccHH
Confidence 457788999999999972 566777777543 35567999999999987631 0 1245543
Q ss_pred ---ccccccCCeEEEEeeec
Q 004945 231 ---TSTMRLGADVIVFSCCC 247 (722)
Q Consensus 231 ---sAsmrLG~~v~V~SR~~ 247 (722)
.-.-++|.++.|.+...
T Consensus 526 i~~~~~~~lgG~l~i~s~~~ 545 (569)
T PRK10600 526 IMRDRAQSLRGDCRVRRRES 545 (569)
T ss_pred HHHHHHHHcCCEEEEEECCC
Confidence 23345888999888753
No 85
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=91.59 E-value=0.18 Score=56.89 Aligned_cols=82 Identities=21% Similarity=0.304 Sum_probs=50.8
Q ss_pred HHHHhhhcchhhhh-cCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCccccccccccc
Q 004945 156 AFAELLDNSLDEVC-NGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTSTM 234 (722)
Q Consensus 156 AIAELIDNSiDA~~-~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~~IGrfGvGfKsAsm 234 (722)
.|-=|||||+-+.. .......|.|.....++.-.+.|.|||.||+++.+.....-|..+ -|+|+....-
T Consensus 354 ~lqpLvENAi~hgi~~~~~~~~I~i~~~~~~~~i~i~i~Dng~g~~~~~~~~~~~~~~~r----------~giGL~Nv~~ 423 (456)
T COG2972 354 VLQPLVENAIEHGIEPKRPGGSIAISAKKQDDVIQISISDNGPGIDEEKLEGLSTKGENR----------SGIGLSNVKE 423 (456)
T ss_pred HHhHHHHHHHHHhcccCCCCCEEEEEEEEcCCEEEEEEeeCCCCCChhHHHHHHhhccCc----------ccccHHHHHH
Confidence 57789999999842 122334555544444566789999999999999888654322111 4788764432
Q ss_pred cc----CC-eEEEEeeec
Q 004945 235 RL----GA-DVIVFSCCC 247 (722)
Q Consensus 235 rL----G~-~v~V~SR~~ 247 (722)
++ |. .+.+.|+..
T Consensus 424 rl~~~~g~~~~~i~s~~~ 441 (456)
T COG2972 424 RLKLYFGEPGLSIDSQPG 441 (456)
T ss_pred HHHHeeCCcceeEeecCC
Confidence 22 33 345555543
No 86
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=90.99 E-value=0.47 Score=54.36 Aligned_cols=65 Identities=18% Similarity=0.145 Sum_probs=50.9
Q ss_pred cCHHHHHHHhhhcchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccc
Q 004945 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKS 216 (722)
Q Consensus 151 ~~~fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~ 216 (722)
..+...+-.|+-||+||+...|.-|+|+...+ ..+..+|.|.|||.|-+.+-+.+.+.+-+++|.
T Consensus 563 v~ieQVlvNl~~NaldA~~h~~p~i~~~~~~~-~~e~l~i~i~DnGqGwp~~l~dkLl~PFttsK~ 627 (673)
T COG4192 563 VSIEQVLVNLIVNALDASTHFAPWIKLIALGT-EQEMLRIAIIDNGQGWPHELVDKLLTPFTTSKE 627 (673)
T ss_pred hhHHHHHHHHHHHHHhhhccCCceEEEEeecC-cccceEEEEecCCCCCchhHHHHhcCCcccccc
Confidence 34567788999999999876666666655432 356788999999999999999999997777774
No 87
>PRK13560 hypothetical protein; Provisional
Probab=90.15 E-value=0.5 Score=55.03 Aligned_cols=75 Identities=20% Similarity=0.181 Sum_probs=47.2
Q ss_pred HHHHHHhhhcchhhhhcC--CceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCcccccccc
Q 004945 154 LGAFAELLDNSLDEVCNG--ATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKT 231 (722)
Q Consensus 154 fsAIAELIDNSiDA~~~g--At~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~~IGrfGvGfKs 231 (722)
...|.+||.||+++...+ ...|.|.+.... ++.-.|.|.|||+||+++... . .| -|+||..
T Consensus 713 ~~il~NLl~NAik~~~~~~~~~~i~i~~~~~~-~~~v~i~V~D~G~GI~~~~~~-----~----------~~-~gLGLai 775 (807)
T PRK13560 713 GLIISELLSNALKHAFPDGAAGNIKVEIREQG-DGMVNLCVADDGIGLPAGFDF-----R----------AA-ETLGLQL 775 (807)
T ss_pred HHHHHHHHHHHHHhhccCCCCceEEEEEEEcC-CCEEEEEEEeCCCcCCccccc-----c----------cc-CCccHHH
Confidence 346889999999973222 235555554321 345679999999999986311 0 00 1577643
Q ss_pred ---cccccCCeEEEEee
Q 004945 232 ---STMRLGADVIVFSC 245 (722)
Q Consensus 232 ---AsmrLG~~v~V~SR 245 (722)
..-..|-.+.|.|.
T Consensus 776 ~~~iv~~~gG~I~v~S~ 792 (807)
T PRK13560 776 VCALVKQLDGEIALDSR 792 (807)
T ss_pred HHHHHHHcCCEEEEEcC
Confidence 23458888999884
No 88
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=88.96 E-value=0.61 Score=54.97 Aligned_cols=58 Identities=21% Similarity=0.291 Sum_probs=43.7
Q ss_pred HHHHHHHhhhcchhhhhcC-Ccee---EEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhc
Q 004945 153 ALGAFAELLDNSLDEVCNG-ATYS---NIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSL 210 (722)
Q Consensus 153 ~fsAIAELIDNSiDA~~~g-At~V---~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~ 210 (722)
+-.|+..||.||.+|+.+. +.+. .|.+..+..++.-++.|.|||.|.+.+.+.+++.+
T Consensus 601 l~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~~~~~g~i~v~V~DNGkG~p~e~r~r~~EP 662 (712)
T COG5000 601 LGQVFGNLLKNAAEAIEAVEAEERRTALIRVSLDDADGRIVVDVIDNGKGFPRENRHRALEP 662 (712)
T ss_pred HHHHHHHHHHhHHHHhhhcccccCCcceEEEEEecCCCeEEEEEecCCCCCChHHhhhhccC
Confidence 3468899999999997522 1111 35555555567888999999999999999999873
No 89
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=88.55 E-value=0.6 Score=54.21 Aligned_cols=75 Identities=28% Similarity=0.408 Sum_probs=57.4
Q ss_pred HHHHHHhhhcchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCccccccc-cc
Q 004945 154 LGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK-TS 232 (722)
Q Consensus 154 fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~~IGrfGvGfK-sA 232 (722)
..-++|-+-|++.. +.|+.|+|.+..+. |...+.|.|||+|++.. ....|.||+-.- --
T Consensus 483 LqIvREAlsNa~KH--a~As~i~V~~~~~~--g~~~~~VeDnG~Gi~~~----------------~e~~gHyGL~IM~ER 542 (574)
T COG3850 483 LQIVREALSNAIKH--AQASEIKVTVSQND--GQVTLTVEDNGVGIDEA----------------AEPSGHYGLNIMRER 542 (574)
T ss_pred HHHHHHHHHHHHHh--cccCeEEEEEEecC--CeEEEEEeeCCcCCCCc----------------cCCCCCcchHHHHHH
Confidence 45689999999997 57999888887654 78899999999998765 234678887541 11
Q ss_pred ccccCCeEEEEeeecC
Q 004945 233 TMRLGADVIVFSCCCG 248 (722)
Q Consensus 233 smrLG~~v~V~SR~~g 248 (722)
+-+++..+.|-.|..|
T Consensus 543 A~~L~~~L~i~~~~~g 558 (574)
T COG3850 543 AQRLGGQLRIRRREGG 558 (574)
T ss_pred HHHhcCeEEEeecCCC
Confidence 2368999999888754
No 90
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=88.06 E-value=0.76 Score=47.58 Aligned_cols=59 Identities=22% Similarity=0.250 Sum_probs=38.4
Q ss_pred hhhcccccccCHHHHHHHhhhcchhhhhc--CCceeEEEEEEccCCCceeEEEEEcCCCCCHH
Q 004945 142 FLHSNATSHKWALGAFAELLDNSLDEVCN--GATYSNIDMLINRKDGSRMLLIEDNGGGMNPD 202 (722)
Q Consensus 142 fLhSnstsh~~~fsAIAELIDNSiDA~~~--gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~e 202 (722)
+|....... +--+|.||+-||+..-.- ....|.|.+.....++...+.|.|||.|++.+
T Consensus 114 ~l~~d~A~~--Lgliv~EL~tNa~Khaf~~~~~G~I~I~~~~~~~~~~~~l~v~deg~G~~~~ 174 (221)
T COG3920 114 FLDPDTAVP--LGLIVHELVTNALKHAFLSRPGGEIRITLSREGDGGRFLLTVWDEGGGPPVE 174 (221)
T ss_pred EECchhhHH--HHHHHHHHHHHHHHhcCCCCCCCEEEEEEEEcCCCCeEEEEEEECCCCCCCC
Confidence 444443333 234589999999997322 24467777766542224789999999998754
No 91
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=87.83 E-value=1.7 Score=42.56 Aligned_cols=87 Identities=17% Similarity=0.148 Sum_probs=53.8
Q ss_pred cCHHHHHHHhhhcchhhhhcCC---ceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCcccc
Q 004945 151 KWALGAFAELLDNSLDEVCNGA---TYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGN 227 (722)
Q Consensus 151 ~~~fsAIAELIDNSiDA~~~gA---t~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~~IGrfGv 227 (722)
..+-.|+.|++.|++.+.-... ..|.|.+... .+.-.++|.|.| .+.+++...+..++... ..+-.-|+
T Consensus 39 ~~l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~~--~~~~~i~i~D~G--~~~~~~~~~~~~~~~~~----~~~~~~G~ 110 (146)
T COG2172 39 ADLAIAVSEALTNAVKHAYKLDPSEGEIRIEVSLD--DGKLEIRIWDQG--PGIEDLEESLGPGDTTA----EGLQEGGL 110 (146)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEEEc--CCeEEEEEEeCC--CCCCCHHHhcCCCCCCC----cccccccc
Confidence 5567899999999999742211 3456665554 467889999999 55556666776663322 12222255
Q ss_pred cccccccccCCeEEEEeee
Q 004945 228 GFKTSTMRLGADVIVFSCC 246 (722)
Q Consensus 228 GfKsAsmrLG~~v~V~SR~ 246 (722)
||. ...++-+++.+....
T Consensus 111 Gl~-l~~~~~D~~~~~~~~ 128 (146)
T COG2172 111 GLF-LAKRLMDEFSYERSE 128 (146)
T ss_pred cHH-HHhhhheeEEEEecc
Confidence 543 233577788777544
No 92
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=85.09 E-value=1.2 Score=50.21 Aligned_cols=74 Identities=22% Similarity=0.251 Sum_probs=48.0
Q ss_pred HHHHHHHhhhcchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCccccccc--
Q 004945 153 ALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK-- 230 (722)
Q Consensus 153 ~fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~~IGrfGvGfK-- 230 (722)
+...+.+|+.||+.+. .+..+.|.+.... .+.-.|.|.|||.||++++.. .-|+|+.
T Consensus 472 l~qv~~nll~NA~k~~--~~~~i~i~~~~~~-~~~~~i~V~D~G~Gi~~~~~~------------------~~glGL~i~ 530 (565)
T PRK10935 472 LLQIIREATLNAIKHA--NASEIAVSCVTNP-DGEHTVSIRDDGIGIGELKEP------------------EGHYGLNIM 530 (565)
T ss_pred HHHHHHHHHHHHHhcC--CCCeEEEEEEEcC-CCEEEEEEEECCcCcCCCCCC------------------CCCcCHHHH
Confidence 4567899999999863 4556666665431 345679999999999864311 1245542
Q ss_pred -ccccccCCeEEEEeeec
Q 004945 231 -TSTMRLGADVIVFSCCC 247 (722)
Q Consensus 231 -sAsmrLG~~v~V~SR~~ 247 (722)
.-.-.+|..+.|.|...
T Consensus 531 ~~iv~~~~G~i~v~s~~~ 548 (565)
T PRK10935 531 QERAERLGGTLTISQPPG 548 (565)
T ss_pred HHHHHHcCCEEEEEECCC
Confidence 22335777788877653
No 93
>PRK13559 hypothetical protein; Provisional
Probab=83.03 E-value=1.9 Score=45.83 Aligned_cols=75 Identities=13% Similarity=0.030 Sum_probs=47.0
Q ss_pred HHHHHHHhhhcchhhhh--cCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCccccccc
Q 004945 153 ALGAFAELLDNSLDEVC--NGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (722)
Q Consensus 153 ~fsAIAELIDNSiDA~~--~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~~IGrfGvGfK 230 (722)
+..++.|||.||+.+-. .....|.|.+.....++...|.+.|||+||.++.- .-|+|+.
T Consensus 268 l~~vl~nLi~NA~k~~~~~~~~g~i~v~~~~~~~~~~~~i~v~d~G~~~~~~~~-------------------~~g~Gl~ 328 (361)
T PRK13559 268 LGLVLHELAVNAIKHGALSADQGRISISWKPSPEGAGFRIDWQEQGGPTPPKLA-------------------KRGFGTV 328 (361)
T ss_pred HHHHHHHHHHhHHHhccccCCCcEEEEEEEecCCCCeEEEEEECCCCCCCCCCC-------------------CCCcHHH
Confidence 45688999999998721 12346666663233345678999999999766421 1155543
Q ss_pred c---cccc-cCCeEEEEeee
Q 004945 231 T---STMR-LGADVIVFSCC 246 (722)
Q Consensus 231 s---Asmr-LG~~v~V~SR~ 246 (722)
. ..-+ +|..+.+.+..
T Consensus 329 i~~~~v~~~~gG~i~~~~~~ 348 (361)
T PRK13559 329 IIGAMVESQLNGQLEKTWSD 348 (361)
T ss_pred HHHHHHHHHcCCeEEEEEcC
Confidence 2 2223 88888887763
No 94
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=82.74 E-value=1.4 Score=49.18 Aligned_cols=75 Identities=13% Similarity=0.218 Sum_probs=49.9
Q ss_pred HHHHHHHhhhcchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhh-ccccccccCCcccCcccccccc
Q 004945 153 ALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMS-LGYSAKSKAANTIGQYGNGFKT 231 (722)
Q Consensus 153 ~fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~-~G~SsK~r~~~~IGrfGvGfKs 231 (722)
+...|-.+|.||+..-- ....|.|.+.. ....-.|.|.|.|.|++.+++.+.|. |-+-+|. .....|--|+|+.-
T Consensus 343 ~tQVldNii~NA~KYsP-~Gg~Itv~~~~--~~~~v~iSI~D~G~gIPk~d~~~iFdrfyRvdkA-RsR~~gGTGLGLaI 418 (459)
T COG5002 343 MTQVLDNIISNALKYSP-DGGRITVSVKQ--RETWVEISISDQGLGIPKEDLEKIFDRFYRVDKA-RSRKMGGTGLGLAI 418 (459)
T ss_pred HHHHHHHHHHHHhhcCC-CCCeEEEEEee--eCcEEEEEEccCCCCCCchhHHHHHHHHhhhhhh-hhhcCCCCchhHHH
Confidence 34667788888887622 23344554433 34456799999999999999999986 4443442 23456777888753
No 95
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=80.45 E-value=2.3 Score=47.83 Aligned_cols=64 Identities=25% Similarity=0.280 Sum_probs=48.4
Q ss_pred eeeecchhhhcccccccCHHHHHHHhhhcchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHH
Q 004945 135 HVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPD 202 (722)
Q Consensus 135 ~~~v~p~fLhSnstsh~~~fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~e 202 (722)
+...+++-.+-+-|.....+--.-|++.|-... +.|+.|+|.+... +..-++.|.|||.|++..
T Consensus 393 q~~~~~n~~~ldet~rvTLyRl~QE~LNNI~KH--A~AS~V~i~l~~~--~e~l~Lei~DdG~Gl~~~ 456 (497)
T COG3851 393 QLDWRINETALDETQRVTLYRLCQELLNNICKH--ADASAVTIQLWQQ--DERLMLEIEDDGSGLPPG 456 (497)
T ss_pred EeccccCcccCCcceeEeHHHHHHHHHHHHHhc--cccceEEEEEeeC--CcEEEEEEecCCcCCCCC
Confidence 344455555666677777888899999999986 5789988888653 345789999999997653
No 96
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=76.26 E-value=4.1 Score=48.56 Aligned_cols=65 Identities=18% Similarity=0.233 Sum_probs=44.9
Q ss_pred hhcccccccCHHHHHHHhhhcchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhh
Q 004945 143 LHSNATSHKWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMS 209 (722)
Q Consensus 143 LhSnstsh~~~fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~ 209 (722)
|+...+--.-+-.....||.||+.........|.|. .++.+...++.|.|||.|++++-+.+.|.
T Consensus 627 lp~v~~d~~~l~qv~~NLi~Naik~~~~e~~~i~I~--~~r~ed~~t~sV~dng~Gi~~a~~~riF~ 691 (750)
T COG4251 627 LPVVAADATQLGQVFQNLIANAIKFGGPENPDIEIS--AERQEDEWTFSVRDNGIGIDPAYFERIFV 691 (750)
T ss_pred cceeecCHHHHHHHHHHHHhhheecCCCCCCceEEe--eeccCCceEEEecCCCCCcCHHHHHHHHH
Confidence 443333333344556889999998744344544444 45556778999999999999999998764
No 97
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=61.85 E-value=13 Score=41.21 Aligned_cols=75 Identities=23% Similarity=0.256 Sum_probs=45.1
Q ss_pred CHHHHHHHhhhcchhhhhcCCc---eeEEE------EEEccC--CCceeEEEEEcCCCCCHHHHHhhhhccccccccCCc
Q 004945 152 WALGAFAELLDNSLDEVCNGAT---YSNID------MLINRK--DGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAAN 220 (722)
Q Consensus 152 ~~fsAIAELIDNSiDA~~~gAt---~V~Id------I~~~~~--~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~ 220 (722)
-+..|+..||.||..|....+. .|.+. +..-.. .-.--|.|+|||.|++++-....|..--|.|.
T Consensus 241 qliQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~~i~g~r~rl~l~leViDNGPGVP~~L~~~lF~P~Vs~r~---- 316 (363)
T COG3852 241 QLIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQLTIAGTRYRLALPLEVIDNGPGVPPDLQDHLFYPMVSGRE---- 316 (363)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCceEEEEeccceEEEccCceeEeeeeeEEecCCCCCChHHhhhccccccccCC----
Confidence 3568999999999999642221 22111 111100 01224789999999999888888775444443
Q ss_pred ccCccccccccc
Q 004945 221 TIGQYGNGFKTS 232 (722)
Q Consensus 221 ~IGrfGvGfKsA 232 (722)
|-=|+|+..+
T Consensus 317 --~GsGLGLala 326 (363)
T COG3852 317 --GGTGLGLALA 326 (363)
T ss_pred --CCccccHHHH
Confidence 2237776544
No 98
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=44.34 E-value=38 Score=38.15 Aligned_cols=79 Identities=22% Similarity=0.285 Sum_probs=52.5
Q ss_pred CHHHHHHHhhhcchhhhh--cCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCcccccc
Q 004945 152 WALGAFAELLDNSLDEVC--NGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGF 229 (722)
Q Consensus 152 ~~fsAIAELIDNSiDA~~--~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~~IGrfGvGf 229 (722)
.+.+|+--.++.|+.-+. ++|+.|.|-+ ...++.-.+.|.|||.|.+.+++..-+ .|+|+
T Consensus 355 e~~talyRv~QEaltNIErHa~Atrv~ill--~~~~d~vql~vrDnG~GF~~~~~~~~~----------------~GiGL 416 (459)
T COG4564 355 EVATALYRVVQEALTNIERHAGATRVTILL--QQMGDMVQLMVRDNGVGFSVKEALQKR----------------HGIGL 416 (459)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCeEEEEEe--ccCCcceEEEEecCCCCccchhhccCc----------------ccccc
Confidence 344666666666665443 4678766655 334567789999999998887765332 36666
Q ss_pred cc---cccccCCeEEEEeeecC
Q 004945 230 KT---STMRLGADVIVFSCCCG 248 (722)
Q Consensus 230 Ks---AsmrLG~~v~V~SR~~g 248 (722)
.- -.-.+|..+.|.|-..|
T Consensus 417 RNMrERma~~GG~~~v~s~p~G 438 (459)
T COG4564 417 RNMRERMAHFGGELEVESSPQG 438 (459)
T ss_pred ccHHHHHHHhCceEEEEecCCC
Confidence 42 12237889999998765
No 99
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=34.72 E-value=31 Score=40.41 Aligned_cols=44 Identities=25% Similarity=0.422 Sum_probs=30.3
Q ss_pred HHHhhhcchhhhh---cCCceeEEEEEEccCCCceeEEEEEcCCCCCHH
Q 004945 157 FAELLDNSLDEVC---NGATYSNIDMLINRKDGSRMLLIEDNGGGMNPD 202 (722)
Q Consensus 157 IAELIDNSiDA~~---~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~e 202 (722)
|-=||.||+..-. .+.-.|.|.+... +..-+|.|.|||.|+.++
T Consensus 461 lQPLVENAIKHG~~~~~~~g~V~I~V~~~--d~~l~i~VeDng~li~p~ 507 (557)
T COG3275 461 LQPLVENAIKHGISQLKDTGRVTISVEKE--DADLRIEVEDNGGLIQPD 507 (557)
T ss_pred hhHHHHHHHHhcccchhcCCceEEEEEEe--CCeEEEEEecCCCCcCCC
Confidence 4668999998521 1123456655443 456789999999999987
No 100
>PF14501 HATPase_c_5: GHKL domain
Probab=30.67 E-value=89 Score=27.76 Aligned_cols=44 Identities=18% Similarity=0.308 Sum_probs=27.7
Q ss_pred HHHHHHHhhhcchhhhhcC--CceeEEEEEEccCCCceeEEEEEcCCC
Q 004945 153 ALGAFAELLDNSLDEVCNG--ATYSNIDMLINRKDGSRMLLIEDNGGG 198 (722)
Q Consensus 153 ~fsAIAELIDNSiDA~~~g--At~V~IdI~~~~~~g~~~I~I~DNG~G 198 (722)
+-..|.-|+|||++|+... .+.|.|.+... .+...|.|.-....
T Consensus 6 l~~il~nlldNAiea~~~~~~~~~I~i~~~~~--~~~~~i~i~N~~~~ 51 (100)
T PF14501_consen 6 LCRILGNLLDNAIEACKKYEDKRFISISIREE--NGFLVIIIENSCEK 51 (100)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEEEEEEec--CCEEEEEEEECCCC
Confidence 4467899999999997532 34566666543 35555666554333
No 101
>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics]
Probab=30.12 E-value=66 Score=39.78 Aligned_cols=49 Identities=20% Similarity=0.303 Sum_probs=35.1
Q ss_pred HHHHHHHhhhcchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHH
Q 004945 153 ALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKM 204 (722)
Q Consensus 153 ~fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL 204 (722)
++..+-|+++||.| ..+++..-.|.+..++ ....|.|.+||.|+.-+..
T Consensus 54 l~ki~dEilvNaad-k~rd~~m~~i~v~i~~--e~~~isv~nnGkGIPv~~H 102 (842)
T KOG0355|consen 54 LYKIFDEILVNAAD-KQRDPKMNTIKVTIDK--EKNEISVYNNGKGIPVTIH 102 (842)
T ss_pred HHHHHHHHhhcccc-cccCCCcceeEEEEcc--CCCEEEEEeCCCcceeeec
Confidence 34568999999999 5555554344444444 5678999999999987654
No 102
>COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]
Probab=21.99 E-value=96 Score=36.25 Aligned_cols=68 Identities=24% Similarity=0.382 Sum_probs=45.8
Q ss_pred CHHHHHHHhhhcchhhhh--cCCceeEEEEEEccCCCceeEEEEEcCC---CCCHHHHHhhhhcccccccc---------
Q 004945 152 WALGAFAELLDNSLDEVC--NGATYSNIDMLINRKDGSRMLLIEDNGG---GMNPDKMRHCMSLGYSAKSK--------- 217 (722)
Q Consensus 152 ~~fsAIAELIDNSiDA~~--~gAt~V~IdI~~~~~~g~~~I~I~DNG~---GMs~eeL~~~l~~G~SsK~r--------- 217 (722)
.|..||+|+|-||+-.-+ -....|+|+++.+ .|.|.-.|. ||+++++.+- .| +.|
T Consensus 270 yP~~alREai~NAv~HRDYs~~~~~v~I~iydD------RieI~NPGgl~~gi~~~~l~~~----~s-~~RNp~LA~~l~ 338 (467)
T COG2865 270 YPLEALREAIINAVIHRDYSIRGRNVHIEIYDD------RIEITNPGGLPPGITPEDLLKG----RS-KSRNPVLAKVLR 338 (467)
T ss_pred CCHHHHHHHHHHHHHhhccccCCCceEEEEECC------eEEEECCCCCCCCCChhHcccC----CC-cccCHHHHHHHH
Confidence 467899999999996421 1234788888753 599998786 8888877652 22 222
Q ss_pred CCcccCccccccc
Q 004945 218 AANTIGQYGNGFK 230 (722)
Q Consensus 218 ~~~~IGrfGvGfK 230 (722)
.-.-|-++|-|+.
T Consensus 339 ~~~liE~~GSGi~ 351 (467)
T COG2865 339 DMGLIEERGSGIR 351 (467)
T ss_pred HhhhHHHhCccHH
Confidence 2244568888875
No 103
>KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=20.37 E-value=34 Score=39.46 Aligned_cols=14 Identities=50% Similarity=0.788 Sum_probs=12.2
Q ss_pred cCCCCcCCCCCCCC
Q 004945 78 LPVGFLEPLPAPER 91 (722)
Q Consensus 78 ~~~~~~~~~~~~~~ 91 (722)
-|.+||.|||.-|.
T Consensus 288 y~t~Fl~pLPa~PV 301 (492)
T KOG2183|consen 288 YPTSFLAPLPAWPV 301 (492)
T ss_pred CCccccCcCCCCcH
Confidence 68999999988775
Done!