Query 004945
Match_columns 722
No_of_seqs 306 out of 1575
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 10:37:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004945.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004945hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1y4s_A Chaperone protein HTPG; 99.7 1.1E-16 3.9E-21 180.2 10.2 112 126-248 9-145 (559)
2 2o1u_A Endoplasmin; GRP94, HSP 99.7 2.9E-16 1E-20 179.8 12.6 113 125-248 26-166 (666)
3 2ioq_A Chaperone protein HTPG; 99.6 2E-16 6.7E-21 180.3 7.8 113 125-248 8-145 (624)
4 3nmq_A Heat shock protein HSP 99.6 5.4E-16 1.8E-20 158.5 3.6 112 126-248 21-155 (239)
5 3peh_A Endoplasmin homolog; st 99.6 7.3E-16 2.5E-20 160.7 3.8 112 126-248 28-163 (281)
6 3ied_A Heat shock protein; HSP 99.6 1.1E-15 3.8E-20 157.7 4.3 109 126-245 29-197 (272)
7 1qy5_A Endoplasmin; GRP94, NEC 99.5 1.5E-15 5E-20 157.5 2.9 112 126-248 10-149 (269)
8 1b63_A MUTL; DNA mismatch repa 99.5 9E-15 3.1E-19 155.0 8.6 90 151-248 23-118 (333)
9 3o0i_A HSP90AA1 protein; HSP90 99.5 2.9E-15 9.8E-20 154.5 3.6 112 126-248 42-176 (256)
10 2gqp_A Endoplasmin; GRP94, HSP 99.5 2.4E-15 8.3E-20 152.8 2.6 112 126-248 14-153 (236)
11 3t0h_A Heat shock protein HSP 99.5 2.5E-15 8.7E-20 152.4 2.4 112 126-248 14-148 (228)
12 2wer_A ATP-dependent molecular 99.5 9.4E-15 3.2E-19 146.3 4.5 92 154-248 28-142 (220)
13 2cg9_A ATP-dependent molecular 99.5 1.7E-14 5.9E-19 165.4 6.7 112 126-248 8-142 (677)
14 1yc1_A HSP 86, heat shock prot 99.5 2.3E-14 7.8E-19 148.2 4.7 95 151-248 67-184 (264)
15 2ior_A Chaperone protein HTPG; 99.5 2.9E-14 9.9E-19 144.6 5.2 94 152-248 47-165 (235)
16 3na3_A DNA mismatch repair pro 99.3 8E-13 2.7E-17 141.6 6.6 91 151-249 27-123 (348)
17 3h4l_A DNA mismatch repair pro 99.0 1.7E-10 5.7E-15 124.5 5.6 91 150-248 23-119 (367)
18 1h7s_A PMS1 protein homolog 2; 99.0 3.2E-10 1.1E-14 121.9 5.8 90 151-248 33-128 (365)
19 4duh_A DNA gyrase subunit B; s 98.9 2.1E-09 7.1E-14 108.6 8.7 121 117-248 4-138 (220)
20 4emv_A DNA topoisomerase IV, B 98.9 3.2E-09 1.1E-13 107.8 8.7 123 114-248 7-142 (226)
21 3fv5_A DNA topoisomerase 4 sub 98.9 1.3E-09 4.6E-14 108.3 5.2 106 132-248 1-120 (201)
22 1s16_A Topoisomerase IV subuni 98.6 3.2E-08 1.1E-12 107.5 6.0 107 131-248 14-134 (390)
23 3lnu_A Topoisomerase IV subuni 98.6 9.6E-08 3.3E-12 104.4 9.2 118 116-248 22-153 (408)
24 1ei1_A DNA gyrase B, GYRB; ATP 98.5 4.6E-08 1.6E-12 106.3 5.8 111 131-248 13-137 (391)
25 1kij_A DNA gyrase subunit B; t 98.3 3.9E-07 1.3E-11 98.8 4.0 110 131-248 12-135 (390)
26 3ttz_A DNA gyrase subunit B; p 98.2 2.3E-06 7.8E-11 85.1 8.5 98 132-248 12-111 (198)
27 3cwv_A DNA gyrase, B subunit, 98.2 1.6E-06 5.6E-11 93.5 6.6 106 131-248 10-120 (369)
28 1mu5_A Type II DNA topoisomera 98.1 1.8E-06 6.1E-11 95.8 6.2 98 151-248 31-136 (471)
29 1zxm_A TOPO IIA ATPase, DNA to 98.1 1.8E-06 6.2E-11 94.1 4.8 92 151-247 51-156 (400)
30 2zbk_B Type 2 DNA topoisomeras 98.0 2.8E-06 9.7E-11 95.6 5.6 98 151-248 30-135 (530)
31 1id0_A PHOQ histidine kinase; 97.7 7.3E-05 2.5E-09 67.3 8.1 86 152-246 44-132 (152)
32 2c2a_A Sensor histidine kinase 97.7 3.7E-05 1.3E-09 75.6 6.4 93 152-246 138-235 (258)
33 2q2e_B Type 2 DNA topoisomeras 97.7 2.4E-05 8.3E-10 89.6 5.7 97 151-248 36-140 (621)
34 3sl2_A Sensor histidine kinase 97.7 4.1E-05 1.4E-09 71.3 6.0 93 153-246 44-139 (177)
35 1bxd_A ENVZ(290-450), protein 97.6 9.4E-05 3.2E-09 67.7 7.3 88 152-246 47-137 (161)
36 1i58_A Chemotaxis protein CHEA 97.6 4.7E-05 1.6E-09 71.7 5.4 92 152-246 47-176 (189)
37 2btz_A Pyruvate dehydrogenase 97.6 0.0001 3.6E-09 78.4 8.0 93 152-246 231-337 (394)
38 3a0y_A Sensor protein; ATP-LID 97.6 0.00014 4.9E-09 65.0 7.5 86 151-245 46-135 (152)
39 2q8g_A [pyruvate dehydrogenase 97.6 0.00013 4.4E-09 78.1 8.3 93 152-246 243-350 (407)
40 1ysr_A Sensor-type histidine k 97.5 0.00014 4.7E-09 65.6 7.1 88 152-246 46-136 (150)
41 2e0a_A Pyruvate dehydrogenase 97.5 0.00013 4.5E-09 77.7 7.8 93 152-246 230-337 (394)
42 1r62_A Nitrogen regulation pro 97.5 7.5E-05 2.6E-09 67.2 4.9 87 152-246 48-147 (160)
43 1y8o_A [pyruvate dehydrogenase 97.5 0.00015 5.3E-09 78.0 7.5 93 152-246 253-361 (419)
44 4ew8_A Sensor protein DIVL; si 97.4 0.00026 9E-09 69.4 7.4 86 152-246 155-243 (268)
45 1gkz_A [3-methyl-2-oxobutanoat 97.4 0.00017 5.8E-09 76.5 6.3 94 151-246 237-360 (388)
46 1pvg_A DNA topoisomerase II; G 97.4 0.00015 5.2E-09 79.6 5.8 90 152-246 64-167 (418)
47 1th8_A Anti-sigma F factor; SP 97.4 0.00034 1.2E-08 63.3 7.2 86 152-246 39-126 (145)
48 3jz3_A Sensor protein QSEC; he 97.3 0.00016 5.6E-09 68.4 4.7 86 152-247 117-205 (222)
49 3ehg_A Sensor kinase (YOCF pro 97.3 0.00026 9E-09 63.0 5.3 73 152-246 40-115 (128)
50 1b3q_A Protein (chemotaxis pro 97.2 0.00054 1.9E-08 73.1 7.8 91 153-246 107-235 (379)
51 3d36_A Sporulation kinase B; G 97.1 0.00074 2.5E-08 64.8 7.1 87 152-246 123-212 (244)
52 3a0r_A Sensor protein; four he 97.0 0.00059 2E-08 69.1 5.8 86 151-245 243-332 (349)
53 3ehh_A Sensor kinase (YOCF pro 97.0 0.00088 3E-08 63.7 6.6 72 153-246 131-205 (218)
54 3zxo_A Redox sensor histidine 96.9 0.00096 3.3E-08 58.5 5.4 71 151-247 42-115 (129)
55 3zxq_A Hypoxia sensor histidin 96.4 0.0034 1.2E-07 54.7 5.1 71 151-247 38-111 (124)
56 4gfh_A DNA topoisomerase 2; to 95.2 0.016 5.4E-07 71.0 5.9 88 153-245 60-161 (1177)
57 4fpp_A Phosphotransferase; fou 93.8 0.08 2.7E-06 52.6 6.3 85 152-245 146-235 (247)
58 1ixm_A SPO0B, protein (sporula 89.1 0.25 8.7E-06 48.6 3.8 58 156-213 109-171 (192)
59 3ke6_A Protein RV1364C/MT1410; 88.9 0.48 1.6E-05 50.8 6.1 76 151-245 296-373 (399)
60 3h4l_A DNA mismatch repair pro 29.0 2.6E+02 0.0087 30.0 10.4 27 448-474 264-293 (367)
No 1
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=99.66 E-value=1.1e-16 Score=180.23 Aligned_cols=112 Identities=26% Similarity=0.420 Sum_probs=85.1
Q ss_pred ccccCCCcceeeecchhhhcccccccCHHHHHHHhhhcchhhhh-------------cCCceeEEEEEEccCCCceeEEE
Q 004945 126 WEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVC-------------NGATYSNIDMLINRKDGSRMLLI 192 (722)
Q Consensus 126 ~~~~~~~~~~~~v~p~fLhSnstsh~~~fsAIAELIDNSiDA~~-------------~gAt~V~IdI~~~~~~g~~~I~I 192 (722)
|+++..++.++.+|.-| ++. ..+|+|||+||+||.+ ..+..+.|.|..+. +...|+|
T Consensus 9 Fqaei~~Ll~ll~~~lY------sn~--~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~--~~~~I~I 78 (559)
T 1y4s_A 9 FQSEVKQLLHLMIHSLY------SNK--EIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDK--DKRTLTI 78 (559)
T ss_dssp CCTTHHHHHHHHHHHTG------GGT--THHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEEET--TTTEEEE
T ss_pred eeecHHHHHHHHHHhcC------CCh--HHHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEEeC--CCcEEEE
Confidence 67777777777766655 233 4679999999999972 12555667766654 3478999
Q ss_pred EEcCCCCCHHHHHhhh-hccccccc-----------cCCcccCcccccccccccccCCeEEEEeeecC
Q 004945 193 EDNGGGMNPDKMRHCM-SLGYSAKS-----------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (722)
Q Consensus 193 ~DNG~GMs~eeL~~~l-~~G~SsK~-----------r~~~~IGrfGvGfKsAsmrLG~~v~V~SR~~g 248 (722)
.|||+||++++|.++| .+|+|.+. .+...||+||+||++++| +|++|+|.||+.+
T Consensus 79 ~DnGiGMt~edl~~~l~tiA~Sg~~~f~e~l~~~~~~~~~~iG~fGvGfyS~f~-VadkV~V~Sr~~~ 145 (559)
T 1y4s_A 79 SDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFI-VADKVTVRTRAAG 145 (559)
T ss_dssp EECSSCCCHHHHHHHHSCCSCCCCCCTTCC--------CCCCSSCCCSGGGHHH-HEEEEEEEEECSS
T ss_pred EECCCCCCHHHHHHHHhhhcccccHHHHHHhhccccccccccCCCCcchhhhhh-ccCeEEEEEcCCC
Confidence 9999999999999876 48887642 134689999999997665 9999999999875
No 2
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=99.65 E-value=2.9e-16 Score=179.80 Aligned_cols=113 Identities=21% Similarity=0.339 Sum_probs=70.9
Q ss_pred CccccCCCcceeeecchhhhcccccccCHHHHHHHhhhcchhhhh-------------cCCceeEEEEEEccCCCceeEE
Q 004945 125 GWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVC-------------NGATYSNIDMLINRKDGSRMLL 191 (722)
Q Consensus 125 ~~~~~~~~~~~~~v~p~fLhSnstsh~~~fsAIAELIDNSiDA~~-------------~gAt~V~IdI~~~~~~g~~~I~ 191 (722)
.|++++.++.++.+|.-| ++.+ .+|+|||+||+||.+ ..+..+.|.|..+. +...|+
T Consensus 26 ~Fqaei~~Ll~li~~sLY------sn~e--ifLRELIsNA~DA~dk~r~~~l~~~~~~~~a~~~~I~I~~d~--~~~~I~ 95 (666)
T 2o1u_A 26 AFQAEVNRMMKLIINSLY------KNKE--IFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDK--EKNLLH 95 (666)
T ss_dssp --------CCSSSTTTTS------SSCT--THHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEEET--TTTEEE
T ss_pred ehHHhHHHHHHHHHHhcc------CCch--HHHHHHHhhHHHHHHHHHHHhccCchhccCCCccEEEEEEeC--CCCEEE
Confidence 388888999999988766 3444 469999999999973 12555677776654 347899
Q ss_pred EEEcCCCCCHHHHHhhhh-ccccccc--------------cCCcccCcccccccccccccCCeEEEEeeecC
Q 004945 192 IEDNGGGMNPDKMRHCMS-LGYSAKS--------------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (722)
Q Consensus 192 I~DNG~GMs~eeL~~~l~-~G~SsK~--------------r~~~~IGrfGvGfKsAsmrLG~~v~V~SR~~g 248 (722)
|.|||+||+.++|.++|. +++|.+. .+...||+||+||++++ .+|++|+|.||+.+
T Consensus 96 I~DnGiGMt~edl~~~l~tIA~SGtk~f~~kl~~~~~~~~~d~~~IGqFGvGfySaf-~vAdkV~V~Sr~~~ 166 (666)
T 2o1u_A 96 VTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAF-LVADKVIVTSKHNN 166 (666)
T ss_dssp EEECSCCCCHHHHHHHTTC-------------------------------CTTGGGG-GTEEEEEEEEECTT
T ss_pred EEECCCCCCHHHHHHHHhhhcccccHHHHHHhhhcccccccchhhccCCCcHHHhHH-HhcCEEEEEEeeCC
Confidence 999999999999998774 7777432 23457999999999875 59999999999875
No 3
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=99.63 E-value=2e-16 Score=180.28 Aligned_cols=113 Identities=27% Similarity=0.435 Sum_probs=80.4
Q ss_pred CccccCCCcceeeecchhhhcccccccCHHHHHHHhhhcchhhhh-------------cCCceeEEEEEEccCCCceeEE
Q 004945 125 GWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVC-------------NGATYSNIDMLINRKDGSRMLL 191 (722)
Q Consensus 125 ~~~~~~~~~~~~~v~p~fLhSnstsh~~~fsAIAELIDNSiDA~~-------------~gAt~V~IdI~~~~~~g~~~I~ 191 (722)
.|+++..++.++.+|--| ++. ..+|+|||+||+||.+ ..+..+.|.|..+. +...|+
T Consensus 8 ~Fqaei~~Ll~ll~~~lY------sn~--~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~a~~~~I~I~~d~--~~~~I~ 77 (624)
T 2ioq_A 8 GFQSEVKQLLHLMIHSLY------SNK--EIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDK--DKRTLT 77 (624)
T ss_dssp -------CCHHHHHHHHS------SCT--THHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEEET--TTTEEE
T ss_pred eeeecHHHHHHHHHHhcC------CCh--HHHHHHHHHHHHHhhhhhHHhhccCcccccCCCCcEEEEEEeC--CCcEEE
Confidence 478888888888777666 333 3669999999999962 12555667776654 347899
Q ss_pred EEEcCCCCCHHHHHhhh-hccccccc-----------cCCcccCcccccccccccccCCeEEEEeeecC
Q 004945 192 IEDNGGGMNPDKMRHCM-SLGYSAKS-----------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (722)
Q Consensus 192 I~DNG~GMs~eeL~~~l-~~G~SsK~-----------r~~~~IGrfGvGfKsAsmrLG~~v~V~SR~~g 248 (722)
|.|||+||++++|.+++ .+++|.+. .+...||+||+||++++| +|++|+|+||+.+
T Consensus 78 I~DnGiGMt~edl~~~l~tiA~Sg~~~f~~~l~~~~~~~~~~iG~fGvGfyS~f~-VadkV~V~Sr~~~ 145 (624)
T 2ioq_A 78 ISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFI-VADKVTVRTRAAG 145 (624)
T ss_dssp EEECSCCCCHHHHHHHHHHHCC---------------CCTTHHHHHHHHHHHHHH-HEEEEEEEEECTT
T ss_pred EEECCCCCCHHHHHHHHHhhcccccHHHHHHhcccccccccccCCCCccHHHHHh-cCCeEEEEECCCC
Confidence 99999999999999876 48887642 244679999999998665 9999999999875
No 4
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=99.57 E-value=5.4e-16 Score=158.47 Aligned_cols=112 Identities=21% Similarity=0.348 Sum_probs=86.8
Q ss_pred ccccCCCcceeeecchhhhcccccccCHHHHHHHhhhcchhhhhc-------------CCceeEEEEEEccCCCceeEEE
Q 004945 126 WEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCN-------------GATYSNIDMLINRKDGSRMLLI 192 (722)
Q Consensus 126 ~~~~~~~~~~~~v~p~fLhSnstsh~~~fsAIAELIDNSiDA~~~-------------gAt~V~IdI~~~~~~g~~~I~I 192 (722)
|+++..++.++.+|--| ++.++ +|+|||+||.||++. ....+.|.|..++ ....|.|
T Consensus 21 Fqae~~~ll~ll~~~lY------s~~~i--fLRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~--~~~~L~I 90 (239)
T 3nmq_A 21 FQAEIAQLMSLIINTFY------SNKEI--FLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNP--QERTLTL 90 (239)
T ss_dssp CCHHHHHHHHHHHHSCC------CCTTH--HHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEET--TTTEEEE
T ss_pred ehhhHHHHHHHHHHhcc------CCcHH--HHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEeC--CccEEEE
Confidence 77777778777776666 44554 499999999999742 1234677777665 4678999
Q ss_pred EEcCCCCCHHHHHhhh-hccccccc---------cCCcccCcccccccccccccCCeEEEEeeecC
Q 004945 193 EDNGGGMNPDKMRHCM-SLGYSAKS---------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (722)
Q Consensus 193 ~DNG~GMs~eeL~~~l-~~G~SsK~---------r~~~~IGrfGvGfKsAsmrLG~~v~V~SR~~g 248 (722)
.|||.||++++|.++| .+++|.+. .+...||+||+||++++| +|++|+|+||+.+
T Consensus 91 ~DnGiGMt~edL~~~LgtIA~Sgtk~f~e~~~~~~d~~~IGqFGvGfySaf~-vadkv~V~Sk~~~ 155 (239)
T 3nmq_A 91 VDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVVVITKHND 155 (239)
T ss_dssp EECSCCCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTT
T ss_pred EeCCCCCCHHHHHHHHHHHhcccchhhhhhhcccCCcccccccCcccccccc-cCCEEEEEEeeCC
Confidence 9999999999998765 47776532 245789999999998855 9999999999864
No 5
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=99.56 E-value=7.3e-16 Score=160.69 Aligned_cols=112 Identities=22% Similarity=0.341 Sum_probs=86.4
Q ss_pred ccccCCCcceeeecchhhhcccccccCHHHHHHHhhhcchhhhhc-------------CCceeEEEEEEccCCCceeEEE
Q 004945 126 WEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCN-------------GATYSNIDMLINRKDGSRMLLI 192 (722)
Q Consensus 126 ~~~~~~~~~~~~v~p~fLhSnstsh~~~fsAIAELIDNSiDA~~~-------------gAt~V~IdI~~~~~~g~~~I~I 192 (722)
|+++..+|..+.++.-| ++.. .+|+|||+||+||++. ....+.|.|..+. ....|.|
T Consensus 28 Fqaei~~Ll~ll~~~lY------sn~~--ifLRELIsNA~DA~~k~r~~~l~d~~~~~~~~~l~I~I~~d~--~~~tLtI 97 (281)
T 3peh_A 28 YQTEVTRLMDIIVNSLY------TQKE--VFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANK--EKNILSI 97 (281)
T ss_dssp HHHHHHHHHHHHHHHHT------TCGG--GHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEET--TTTEEEE
T ss_pred ehHHHHHHHHHHHHhcc------CChH--HHHHHHHhChHHHHHHHHHHhcCCchhccCCCceEEEEEEcC--CCcEEEE
Confidence 67777777777776655 3344 4599999999999741 1234677777665 4578999
Q ss_pred EEcCCCCCHHHHHhhhh-ccccccc----------cCCcccCcccccccccccccCCeEEEEeeecC
Q 004945 193 EDNGGGMNPDKMRHCMS-LGYSAKS----------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (722)
Q Consensus 193 ~DNG~GMs~eeL~~~l~-~G~SsK~----------r~~~~IGrfGvGfKsAsmrLG~~v~V~SR~~g 248 (722)
.|||.||++++|.++|. +++|.+. .+...||+||+||++|+| +|++|+|+||+.+
T Consensus 98 ~DNGiGMt~edL~~~LgtIa~Sgtk~f~e~l~~~~~d~~~IGqFGVGFySaf~-vadkV~V~Sk~~~ 163 (281)
T 3peh_A 98 TDTGIGMTKVDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFL-VADKVIVYTKNND 163 (281)
T ss_dssp EECSCCCCHHHHHHHHHHHHHSCHHHHHHHHHHTTCCSTTTTTTTCGGGGGGG-TEEEEEEEEECTT
T ss_pred EeCCCCCCHHHHHHHHHHHHhHhhhhHHHhhhccccccccccccCccchhhcc-ccCEEEEEEecCC
Confidence 99999999999998774 7776432 345789999999998865 9999999999865
No 6
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=99.56 E-value=1.1e-15 Score=157.70 Aligned_cols=109 Identities=23% Similarity=0.375 Sum_probs=90.2
Q ss_pred ccccCCCcceeeecchhhhcccccccCHHHHHHHhhhcchhhhhc-----------------------------------
Q 004945 126 WEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCN----------------------------------- 170 (722)
Q Consensus 126 ~~~~~~~~~~~~v~p~fLhSnstsh~~~fsAIAELIDNSiDA~~~----------------------------------- 170 (722)
|++++.+|.++.+|.-| +++.+| |+|||.||.||++.
T Consensus 29 Fqae~~~ll~li~~slY------s~keiF--lRELISNasDA~dK~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (272)
T 3ied_A 29 FKAEVNKVMDIIVNSLY------TDKDVF--LRELISNASDACDKKRIILENNKLIKDAEVVTNEEIKNETEKEKTENVN 100 (272)
T ss_dssp CCHHHHHHHHHHHHCTT------CCTTHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------------------
T ss_pred hHHHHHHHHHHHHhhcC------CCHHHH--HHHHHHhhHHHHHHHHHhccChhhhhccccccccccccccccccccccc
Confidence 89999999999999988 788988 99999999999861
Q ss_pred --------------CCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhh-hccccccc----------cCCcccCcc
Q 004945 171 --------------GATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCM-SLGYSAKS----------KAANTIGQY 225 (722)
Q Consensus 171 --------------gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l-~~G~SsK~----------r~~~~IGrf 225 (722)
....+.|.|..++ ....|+|.|||.||++++|.++| .+++|.+. .+...||||
T Consensus 101 ~~~~~~~~~~e~~~~~~~l~I~I~~Dk--~~~tLtI~DNGiGMTkeeL~~~LgtIA~SGtk~Fle~l~~~~~d~~~IGqF 178 (272)
T 3ied_A 101 ESTDKKENVEEEKNDIKKLIIKIKPDK--EKKTLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEEGKADSNLIGQF 178 (272)
T ss_dssp -------------CGGGGCCEEEEEET--TTTEEEEEECSCCCCHHHHHHHTTCSCCHHHHHHHHHHHTTSSCTTCGGGS
T ss_pred cccccccccccccCCCCCcEEEEEEeC--CCCEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhhcccccccccCcc
Confidence 0123567777765 45789999999999999999877 47776431 345789999
Q ss_pred cccccccccccCCeEEEEee
Q 004945 226 GNGFKTSTMRLGADVIVFSC 245 (722)
Q Consensus 226 GvGfKsAsmrLG~~v~V~SR 245 (722)
|+||++|+| +|++|+|+||
T Consensus 179 GVGFySaFm-VAdkV~V~Sk 197 (272)
T 3ied_A 179 GVGFYSSFL-VSNRVEVYTK 197 (272)
T ss_dssp CCGGGGGGG-TEEEEEEEEE
T ss_pred cceeheeec-cCCEEEEEEc
Confidence 999998765 9999999999
No 7
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=99.53 E-value=1.5e-15 Score=157.54 Aligned_cols=112 Identities=21% Similarity=0.359 Sum_probs=85.1
Q ss_pred ccccCCCcceeeecchhhhcccccccCHHHHHHHhhhcchhhhh-------------cCCceeEEEEEEccCCCceeEEE
Q 004945 126 WEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVC-------------NGATYSNIDMLINRKDGSRMLLI 192 (722)
Q Consensus 126 ~~~~~~~~~~~~v~p~fLhSnstsh~~~fsAIAELIDNSiDA~~-------------~gAt~V~IdI~~~~~~g~~~I~I 192 (722)
|+++...|.++.+|.-| ++.. .+|+|||+||+||.+ .....+.|.|..+. +...|.|
T Consensus 10 Fqaei~~Ll~li~~~lY------sn~e--ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~--~~~~l~I 79 (269)
T 1qy5_A 10 FQAEVNRMMKLIINSLY------KNKE--IFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDK--EKNLLHV 79 (269)
T ss_dssp CCHHHHHHHHHHHHHHT------TCTT--HHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEET--TTTEEEE
T ss_pred ehhhHHHHHHHHHHhcc------CCch--HHHHHHHHHHHHHHHhhhhhhccCchhccCCCceEEEEEEcC--CceEEEE
Confidence 66777777777776544 3334 469999999999964 12345677776654 5678999
Q ss_pred EEcCCCCCHHHHHhhh-hccccccc--------------cCCcccCcccccccccccccCCeEEEEeeecC
Q 004945 193 EDNGGGMNPDKMRHCM-SLGYSAKS--------------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (722)
Q Consensus 193 ~DNG~GMs~eeL~~~l-~~G~SsK~--------------r~~~~IGrfGvGfKsAsmrLG~~v~V~SR~~g 248 (722)
.|||+||+.++|.++| .+|+|.+. .+...||+||+||++++| +|++|+|+||+.+
T Consensus 80 ~DnGiGMt~edl~~~l~tia~Sgtk~F~~kl~~~~~~~~~d~~~IG~fGvGfySaf~-va~~v~V~Sk~~~ 149 (269)
T 1qy5_A 80 TDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFL-VADKVIVTSKHNN 149 (269)
T ss_dssp EECSCCCCHHHHHHHHHSCCSHHHHHHHHHHHHHHHHTCCCHHHHHHTTCGGGGGGG-TEEEEEEEEECTT
T ss_pred EECCCCCCHHHHHHHhhhhcccccHHHHHhhhhcccccccchhhcCCccccHHHHhh-ccceEEEEEEecC
Confidence 9999999999998876 47877321 234579999999998765 9999999999875
No 8
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=99.53 E-value=9e-15 Score=155.01 Aligned_cols=90 Identities=24% Similarity=0.376 Sum_probs=70.8
Q ss_pred cCHHHHHHHhhhcchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccC------CcccCc
Q 004945 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKA------ANTIGQ 224 (722)
Q Consensus 151 ~~~fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~------~~~IGr 224 (722)
..+..||+|||+||+|| +|+.|.|.+.. ++...|.|.|||.||+++++..++...+++|.+. ...+|.
T Consensus 23 ~~~~~~v~ELi~NaidA---~a~~I~I~i~~---~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK~~~~~d~~~~~~~G~ 96 (333)
T 1b63_A 23 ERPASVVKELVENSLDA---GATRIDIDIER---GGAKLIRIRDNGCGIKKDELALALARHATSKIASLDDLEAIISLGF 96 (333)
T ss_dssp SSHHHHHHHHHHHHHHT---TCSEEEEEEEG---GGTSEEEEEECSCCCCGGGHHHHHSTTCCSSCCSHHHHHTCCSSCC
T ss_pred hCHHHHHHHHHHHHHHC---CCCeEEEEEEe---CCceEEEEEEcCCCcCHHHHHHhhhcccccCccccchhhhccccCc
Confidence 68899999999999998 78988887753 2446899999999999999999885333445422 247899
Q ss_pred ccccccccccccCCeEEEEeeecC
Q 004945 225 YGNGFKTSTMRLGADVIVFSCCCG 248 (722)
Q Consensus 225 fGvGfKsAsmrLG~~v~V~SR~~g 248 (722)
+|+||.+.+ ...+++|.||+.+
T Consensus 97 ~G~gl~si~--~vs~l~v~s~~~~ 118 (333)
T 1b63_A 97 RGEALASIS--SVSRLTLTSRTAE 118 (333)
T ss_dssp SSCHHHHHH--TTSEEEEEEECTT
T ss_pred cccchhhhh--cCCcEEEEEecCC
Confidence 999986543 3448999999865
No 9
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=99.52 E-value=2.9e-15 Score=154.50 Aligned_cols=112 Identities=22% Similarity=0.339 Sum_probs=86.0
Q ss_pred ccccCCCcceeeecchhhhcccccccCHHHHHHHhhhcchhhhhc-------------CCceeEEEEEEccCCCceeEEE
Q 004945 126 WEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCN-------------GATYSNIDMLINRKDGSRMLLI 192 (722)
Q Consensus 126 ~~~~~~~~~~~~v~p~fLhSnstsh~~~fsAIAELIDNSiDA~~~-------------gAt~V~IdI~~~~~~g~~~I~I 192 (722)
|+++...|..+.++--| ++.. .+|+|||+||+||++. ....+.|.|..+. +...|.|
T Consensus 42 Fqaei~~Ll~ll~~~lY------s~~~--iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~--~~~~I~I 111 (256)
T 3o0i_A 42 FQAEIAQLMSLIINTFY------SNKE--IFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNK--QDRTLTI 111 (256)
T ss_dssp CCHHHHHHHHHHHHSCC------SCTT--HHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEET--TTTEEEE
T ss_pred eEeeHHHHHHHHHHhcc------CCcH--HHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEcC--CceEEEE
Confidence 67777777777666555 3444 5599999999999742 1225677776654 5679999
Q ss_pred EEcCCCCCHHHHHhhh-hccccccc---------cCCcccCcccccccccccccCCeEEEEeeecC
Q 004945 193 EDNGGGMNPDKMRHCM-SLGYSAKS---------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (722)
Q Consensus 193 ~DNG~GMs~eeL~~~l-~~G~SsK~---------r~~~~IGrfGvGfKsAsmrLG~~v~V~SR~~g 248 (722)
.|||+||++++|.++| ++++|.+. .+...||+||+||+++++ +|++|+|.||+.+
T Consensus 112 ~DnG~GMt~edl~~~l~~ia~S~~~~f~~~L~~~~~~~~iG~fG~Gf~S~f~-Vadkv~V~Sr~~~ 176 (256)
T 3o0i_A 112 VDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVTVITKHND 176 (256)
T ss_dssp EECSCCCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTT
T ss_pred ecCCCCcCHHHHHHHHHhhccccccchhhhhcccCCccccCCCcchHHHhhc-cCCeEEEEEcCCC
Confidence 9999999999998876 47776542 245789999999998865 9999999999865
No 10
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=99.51 E-value=2.4e-15 Score=152.79 Aligned_cols=112 Identities=21% Similarity=0.336 Sum_probs=77.6
Q ss_pred ccccCCCcceeeecchhhhcccccccCHHHHHHHhhhcchhhhhc-------------CCceeEEEEEEccCCCceeEEE
Q 004945 126 WEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCN-------------GATYSNIDMLINRKDGSRMLLI 192 (722)
Q Consensus 126 ~~~~~~~~~~~~v~p~fLhSnstsh~~~fsAIAELIDNSiDA~~~-------------gAt~V~IdI~~~~~~g~~~I~I 192 (722)
|+++...+.++.++.-| ..+..+|+|||+||+||.+. .+..+.|.|..+. +...|.|
T Consensus 14 F~~ei~~L~~ll~~~ly--------s~~~~~lrELI~NA~DA~ak~~~~~~~~~~~~~~~~~~~I~i~~d~--~~~~i~I 83 (236)
T 2gqp_A 14 FQAEVNRMMKLIINSLY--------KNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDK--EKNLLHV 83 (236)
T ss_dssp CCHHHHHHHHHHHHHTT--------TCTTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEET--TTTEEEE
T ss_pred hhHhHHHHHHHHHHhhc--------CCchHHHHHHHHhHHHhhhhhhhhcccCcccccCCCceEEEEEEcC--CCCEEEE
Confidence 55555555555554433 22457899999999999641 1244667776554 4468999
Q ss_pred EEcCCCCCHHHHHhhh-hccccccc--------------cCCcccCcccccccccccccCCeEEEEeeecC
Q 004945 193 EDNGGGMNPDKMRHCM-SLGYSAKS--------------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (722)
Q Consensus 193 ~DNG~GMs~eeL~~~l-~~G~SsK~--------------r~~~~IGrfGvGfKsAsmrLG~~v~V~SR~~g 248 (722)
.|||+||++++|.++| .+|+|.+. .+...||+||+||++++ .+|++|+|+||+.+
T Consensus 84 ~DnG~GMt~edl~~~l~~ia~Sg~~~f~~kl~~~~~~~~~d~~~iG~fGiG~~S~f-~va~~v~V~Sr~~~ 153 (236)
T 2gqp_A 84 TDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAF-LVADKVIVTSKHNN 153 (236)
T ss_dssp EECSCCCCHHHHHHHHHCC---------------------CHHHHHHTTCGGGGGG-GTEEEEEEEEECTT
T ss_pred EECCcCCCHHHHHHHHhhhcccccHhHHHHhhccccccccchhhcCCCCcchhhHh-hcCCEEEEEEeCCC
Confidence 9999999999998876 48887532 22357999999998765 59999999999865
No 11
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=99.51 E-value=2.5e-15 Score=152.40 Aligned_cols=112 Identities=22% Similarity=0.343 Sum_probs=83.9
Q ss_pred ccccCCCcceeeecchhhhcccccccCHHHHHHHhhhcchhhhhc-------------CCceeEEEEEEccCCCceeEEE
Q 004945 126 WEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCN-------------GATYSNIDMLINRKDGSRMLLI 192 (722)
Q Consensus 126 ~~~~~~~~~~~~v~p~fLhSnstsh~~~fsAIAELIDNSiDA~~~-------------gAt~V~IdI~~~~~~g~~~I~I 192 (722)
|+++..++..+.+|--| ++. ..+|+|||+||+||... ....+.|.|..+. +...|.|
T Consensus 14 Fq~ei~~ll~ll~~~lY------s~~--~~~lrELi~NA~DA~~k~r~~~~~~~~~~~~~~~i~I~I~~d~--~~~~i~V 83 (228)
T 3t0h_A 14 FQAEIAQLMSLIINTFY------SNK--EIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNK--QDRTLTI 83 (228)
T ss_dssp CCHHHHHHHHHHHHSCC------SCT--THHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEET--TTTEEEE
T ss_pred EEeeHHHHHHHHHHhhc------CCc--HHHHHHHHHCHHHHHHHHHhhhccCcccccCCCceEEEEEEeC--CeeEEEE
Confidence 56666666666665544 333 45699999999999642 1125677776554 5678999
Q ss_pred EEcCCCCCHHHHHhhh-hccccccc---------cCCcccCcccccccccccccCCeEEEEeeecC
Q 004945 193 EDNGGGMNPDKMRHCM-SLGYSAKS---------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (722)
Q Consensus 193 ~DNG~GMs~eeL~~~l-~~G~SsK~---------r~~~~IGrfGvGfKsAsmrLG~~v~V~SR~~g 248 (722)
.|||.||++++|..+| .+++|.+. .+...||+||+||+++++ +|++|+|.||+.+
T Consensus 84 ~DnG~GMs~edl~~~l~~ia~S~~~~f~~~l~~~~~~~~iG~fG~G~~S~~~-vad~v~V~Sr~~~ 148 (228)
T 3t0h_A 84 VDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVTVITKHND 148 (228)
T ss_dssp EECSCCCCHHHHHTGGGSCHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTT
T ss_pred EeCCCCCCHHHHHHHHHhhccccchhhhhhhcccCCcccCCCCChhHHHHhc-cCCEEEEEEecCC
Confidence 9999999999998876 47776542 245789999999998865 9999999999865
No 12
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=99.49 E-value=9.4e-15 Score=146.33 Aligned_cols=92 Identities=22% Similarity=0.276 Sum_probs=72.5
Q ss_pred HHHHHHhhhcchhhhhc-------------CCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhh-hccccccc---
Q 004945 154 LGAFAELLDNSLDEVCN-------------GATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCM-SLGYSAKS--- 216 (722)
Q Consensus 154 fsAIAELIDNSiDA~~~-------------gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l-~~G~SsK~--- 216 (722)
..+|+|||+||+||... ....+.|.+..+. +...|.|.|||+||++++|.++| .+|+|.+.
T Consensus 28 ~~~lrELI~NA~DA~a~~~~~~~~~~~~~~~~~~i~I~i~~~~--~~~~i~I~DnG~GMs~edl~~~l~~ia~S~~~~f~ 105 (220)
T 2wer_A 28 EIFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITPKP--EQKVLEIRDSGIGMTKAELINNLGTIAKSGTKAFM 105 (220)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEEEG--GGTEEEEEECSCCCCHHHHHHHTTTSCCTTHHHHH
T ss_pred hHHHHHHHHhHHHHHHHHHhhcccCchhccCCCcEEEEEEECC--CCCEEEEEEcCCCCCHHHHHHHHHhHhcccchhHH
Confidence 47899999999999641 1245667776543 45789999999999999998876 58877532
Q ss_pred ------cCCcccCcccccccccccccCCeEEEEeeecC
Q 004945 217 ------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (722)
Q Consensus 217 ------r~~~~IGrfGvGfKsAsmrLG~~v~V~SR~~g 248 (722)
.+...||+||+||+++ +.++++++|.||+.+
T Consensus 106 ~k~~~~~~~~~iG~fGiG~~s~-~~~~~~v~v~S~~~~ 142 (220)
T 2wer_A 106 EALSAGADVSMIGQFGVGFYSL-FLVADRVQVISKSND 142 (220)
T ss_dssp HHHTTTCCGGGGGGGTCGGGGG-GGTEEEEEEEEECTT
T ss_pred HHhhccCCcccCCccchhHHHh-hhcCCeeEEEEecCC
Confidence 2456899999999876 569999999999865
No 13
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=99.48 E-value=1.7e-14 Score=165.44 Aligned_cols=112 Identities=21% Similarity=0.267 Sum_probs=87.7
Q ss_pred ccccCCCcceeeecchhhhcccccccCHHHHHHHhhhcchhhhh-------------cCCceeEEEEEEccCCCceeEEE
Q 004945 126 WEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVC-------------NGATYSNIDMLINRKDGSRMLLI 192 (722)
Q Consensus 126 ~~~~~~~~~~~~v~p~fLhSnstsh~~~fsAIAELIDNSiDA~~-------------~gAt~V~IdI~~~~~~g~~~I~I 192 (722)
|++++.++.++.+|.-| ++..+ +|+|||.||+||.+ ..+..+.|.|..+. +...|+|
T Consensus 8 Fqae~~~Ll~li~~sLY------snkei--fLRELIsNA~DA~~k~r~~~ltd~~~~~~~~~~~I~I~~d~--~~~~I~I 77 (677)
T 2cg9_A 8 FQAEITQLMSLIINTVY------SNKEI--FLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKP--EQKVLEI 77 (677)
T ss_dssp CCCCHHHHHHHHHHSCC------SCTTH--HHHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEEEG--GGTEEEE
T ss_pred hhhhHHHHHHHHHHhCC------CCchH--HHHHHhhCHHHHHHHHHHHhccChhhccCCCCcEEEEEEeC--CCCEEEE
Confidence 78888888888887756 44554 59999999999974 12445667776654 3478999
Q ss_pred EEcCCCCCHHHHHhhhh-ccccccc---------cCCcccCcccccccccccccCCeEEEEeeecC
Q 004945 193 EDNGGGMNPDKMRHCMS-LGYSAKS---------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (722)
Q Consensus 193 ~DNG~GMs~eeL~~~l~-~G~SsK~---------r~~~~IGrfGvGfKsAsmrLG~~v~V~SR~~g 248 (722)
.|||+||+.++|.++|. +++|.+. .+...||+||+||++|+ .++++|+|.||+.+
T Consensus 78 ~DnGiGMt~edl~~~l~tIA~Sgt~~f~~kl~~~~d~~~IGqFGvGFySaf-~vadkV~V~Sk~~~ 142 (677)
T 2cg9_A 78 RDSGIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLF-LVADRVQVISKSND 142 (677)
T ss_dssp EECSCCCCHHHHHGGGSSSSSCTTHHHHSCCCSSCCCCCCCCTTCTTGGGG-GTEEEEEEEEECTT
T ss_pred EECCCCCCHHHHHHHHHhHhccccHHHHHhhhcccchhhcCCCCchhHHHh-hcCcEEEEEEccCC
Confidence 99999999999998874 7777431 23468999999999875 59999999999876
No 14
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=99.46 E-value=2.3e-14 Score=148.21 Aligned_cols=95 Identities=24% Similarity=0.342 Sum_probs=75.9
Q ss_pred cCHHHHHHHhhhcchhhhhc-------------CCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhh-hccccccc
Q 004945 151 KWALGAFAELLDNSLDEVCN-------------GATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCM-SLGYSAKS 216 (722)
Q Consensus 151 ~~~fsAIAELIDNSiDA~~~-------------gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l-~~G~SsK~ 216 (722)
..+..+|+|||+||+||... ..+.+.|.|..+. +...|.|.|||+||++++|.++| .+++|.+.
T Consensus 67 s~~~~~lrELI~NA~DA~ak~r~~~l~~~~~~~~~~~i~I~i~~d~--~~~~I~I~DnG~GMs~edL~~~l~~ia~S~~~ 144 (264)
T 1yc1_A 67 SNKEIFLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIPNK--QDRTLTIVDTGIGMTKADLINNLGTIAKSGTK 144 (264)
T ss_dssp SCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEEET--TTTEEEEEECSCCCCHHHHHHHHHSCTTSCHH
T ss_pred CCHHHHHHHHHHHHHHHhhhhhhhhccCccccCCCCeEEEEEEECC--CeeEEEEEECCcCCCHHHHHHHHHhhccccch
Confidence 45667899999999999641 1266778776543 46789999999999999998876 58887643
Q ss_pred ---------cCCcccCcccccccccccccCCeEEEEeeecC
Q 004945 217 ---------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (722)
Q Consensus 217 ---------r~~~~IGrfGvGfKsAsmrLG~~v~V~SR~~g 248 (722)
.+...||+||+||+++++ +|++++|+||+.+
T Consensus 145 ~f~~~l~~~~d~~~iG~fGiGf~S~f~-va~~v~V~Sr~~~ 184 (264)
T 1yc1_A 145 AFMEALQAGADISMIGQFGVGFYSAYL-VAEKVTVITKHND 184 (264)
T ss_dssp HHHHHHHTTCCGGGGGGGTCGGGGHHH-HEEEEEEEEECTT
T ss_pred hhhhhhccccchhhcCCCCCCcccccc-CCCEEEEEEecCC
Confidence 245689999999998766 9999999999865
No 15
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=99.45 E-value=2.9e-14 Score=144.61 Aligned_cols=94 Identities=27% Similarity=0.395 Sum_probs=74.0
Q ss_pred CHHHHHHHhhhcchhhhh-------------cCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhh-hccccccc-
Q 004945 152 WALGAFAELLDNSLDEVC-------------NGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCM-SLGYSAKS- 216 (722)
Q Consensus 152 ~~fsAIAELIDNSiDA~~-------------~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l-~~G~SsK~- 216 (722)
.+..||+|||+||+||.. ..++.+.|.|..+. +...|.|.|||+||++++|.++| .+|+|.+.
T Consensus 47 ~~~~~lrELI~NA~DA~~~~r~~~~~~~~~~~~~~~~~I~i~~~~--~~~~i~I~DnG~GMs~edl~~~~~~ia~S~~~~ 124 (235)
T 2ior_A 47 NKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDK--DKRTLTISDNGVGMTRDEVIDHLGTIAKSGTKS 124 (235)
T ss_dssp GTTHHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEEET--TTTEEEEEECSSCCCHHHHHHHHTTCCCTTHHH
T ss_pred CHHHHHHHHHhCHHHHHHHHHhhhccCccccCCCceEEEEEEEcC--CceEEEEEECCCCCCHHHHHHHHHHHccccccc
Confidence 456889999999999963 12555667776554 34579999999999999998865 58887642
Q ss_pred ----------cCCcccCcccccccccccccCCeEEEEeeecC
Q 004945 217 ----------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (722)
Q Consensus 217 ----------r~~~~IGrfGvGfKsAsmrLG~~v~V~SR~~g 248 (722)
.+...+|+||+||+++ |.+|++++|+||+.+
T Consensus 125 f~~~l~~~~~~~~~~iG~fGiG~~S~-~~~~~~v~V~Sr~~~ 165 (235)
T 2ior_A 125 FLESLGSDQAKDSQLIGQFGVGFYSA-FIVADKVTVRTRAAG 165 (235)
T ss_dssp HHHHCCSCHHHHHHHHTTCCCCGGGG-GGTEEEEEEEEECTT
T ss_pred hhhhhccccccccccCCCCChhHHHH-HhCcCeEEEEEecCC
Confidence 1245799999999976 569999999999865
No 16
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=99.33 E-value=8e-13 Score=141.57 Aligned_cols=91 Identities=19% Similarity=0.301 Sum_probs=71.7
Q ss_pred cCHHHHHHHhhhcchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccC------CcccCc
Q 004945 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKA------ANTIGQ 224 (722)
Q Consensus 151 ~~~fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~------~~~IGr 224 (722)
..+..||.|||+||+|| +|+.|.|.+.. ++...|.|.|||+||+++++..++..++++|... ...+|.
T Consensus 27 ~~~~~vv~eLv~NAidA---~a~~I~I~i~~---~~~~~I~V~DnG~GI~~~~l~~~~~~~~tsK~~~~~dl~~i~s~Gf 100 (348)
T 3na3_A 27 QRPANAIKEMIENCLDA---KSTSIQVIVKE---GGLKLIQIQDNGTGIRKEDLDIVCERFTTSKLQSFEDLASISTYGF 100 (348)
T ss_dssp CSHHHHHHHHHHHHHHT---TCSEEEEEEEG---GGTSEEEEEECSCCCCGGGGGTTTSTTCCSSCCCC---------CC
T ss_pred cCHHHHHHHHHHHHHHc---CCCEEEEEEEe---CCEEEEEEEECCcCcChHHhhhhhccccccccCcchhhhccccCCc
Confidence 78899999999999998 78988888742 3456799999999999999999988777777532 246799
Q ss_pred ccccccccccccCCeEEEEeeecCC
Q 004945 225 YGNGFKTSTMRLGADVIVFSCCCGK 249 (722)
Q Consensus 225 fGvGfKsAsmrLG~~v~V~SR~~g~ 249 (722)
+|+|+.+.+ .++ +++|.||+.+.
T Consensus 101 rGeaL~Si~-avs-~l~v~sr~~~~ 123 (348)
T 3na3_A 101 RGEALASIS-HVA-HVTITTKTADG 123 (348)
T ss_dssp TTCHHHHHH-HSS-EEEEEEECTTC
T ss_pred CChHHHHhh-ccc-EEEEEEEECCC
Confidence 999985444 355 89999998763
No 17
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=99.01 E-value=1.7e-10 Score=124.46 Aligned_cols=91 Identities=23% Similarity=0.276 Sum_probs=69.7
Q ss_pred ccCHHHHHHHhhhcchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCC------cccC
Q 004945 150 HKWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAA------NTIG 223 (722)
Q Consensus 150 h~~~fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~------~~IG 223 (722)
-..+.+||.|||+||+|| +|+.|.|.+.. ++...|.|.|||+||+++++..++..++++|.... ...|
T Consensus 23 i~~~~~vv~eLv~NaiDA---~a~~I~I~i~~---~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK~~~~~Dl~~i~t~G 96 (367)
T 3h4l_A 23 ITDLTTAVKELVDNSIDA---NANQIEIIFKD---YGLESIECSDNGDGIDPSNYEFLALKHYTSKIAKFQDVAKVQTLG 96 (367)
T ss_dssp CCSHHHHHHHHHHHHHHT---TCSEEEEEEET---TTTSEEEEEECSCCCCGGGTTTTTCCEEC---------CCCCEEE
T ss_pred ccCHHHHHHHHHHHHHHC---CCCEEEEEEEe---CCEEEEEEEECCCCcChhHhccceeccccCcCCchhhhhhhhccC
Confidence 378889999999999998 79988887742 45678999999999999999998876666665321 3568
Q ss_pred cccccccccccccCCeEEEEeeecC
Q 004945 224 QYGNGFKTSTMRLGADVIVFSCCCG 248 (722)
Q Consensus 224 rfGvGfKsAsmrLG~~v~V~SR~~g 248 (722)
..|+||.+.+ .++ +++|.||+.+
T Consensus 97 frGeaL~Si~-avS-~l~V~sr~~~ 119 (367)
T 3h4l_A 97 FRGEALSSLC-GIA-KLSVITTTSP 119 (367)
T ss_dssp ETTHHHHHHH-HSS-EEEEEEESST
T ss_pred ccchHHHHhh-ccC-EEEEEEEECC
Confidence 8899986544 366 7999999865
No 18
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=98.97 E-value=3.2e-10 Score=121.93 Aligned_cols=90 Identities=26% Similarity=0.366 Sum_probs=66.6
Q ss_pred cCHHHHHHHhhhcchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccC---C---cccCc
Q 004945 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKA---A---NTIGQ 224 (722)
Q Consensus 151 ~~~fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~---~---~~IGr 224 (722)
..+..||.|||+||+|| +|+.|.|.+.. ++...|.|.|||.||+++++..++...+++|... . ..+|.
T Consensus 33 ~~~~~vl~eLv~NAiDA---~a~~I~I~i~~---~~~~~I~V~DnG~Gi~~~~l~~~f~~~~tsK~~~~~dl~~i~s~G~ 106 (365)
T 1h7s_A 33 LSLSTAVKELVENSLDA---GATNIDLKLKD---YGVDLIEVSDNGCGVEEENFEGLTLKHHTSKIQEFADLTQVETFGF 106 (365)
T ss_dssp CCHHHHHHHHHHHHHHT---TCSEEEEEEEG---GGTSEEEEEECSCCCCGGGSGGGGC----------CCTTCSEEESS
T ss_pred hhHHHHHHHHHHHHHHC---CCCEEEEEEEe---CCcEEEEEEECCCCcCHHHHHHHhhhccccccccccchhcccccCC
Confidence 67899999999999998 78888887753 2456899999999999999999876444445432 1 34688
Q ss_pred ccccccccccccCCeEEEEeeecC
Q 004945 225 YGNGFKTSTMRLGADVIVFSCCCG 248 (722)
Q Consensus 225 fGvGfKsAsmrLG~~v~V~SR~~g 248 (722)
+|+||.+.+ .++ +++|.||+.+
T Consensus 107 rG~gl~si~-~vs-~v~v~t~~~~ 128 (365)
T 1h7s_A 107 RGEALSSLC-ALS-DVTISTCHAS 128 (365)
T ss_dssp SSSHHHHHH-HHS-EEEEEEECTT
T ss_pred CCchhhhhh-hhc-cEEEEEccCC
Confidence 899986544 366 9999999865
No 19
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=98.91 E-value=2.1e-09 Score=108.61 Aligned_cols=121 Identities=20% Similarity=0.258 Sum_probs=75.1
Q ss_pred CCCCCCCCCccccCCCcceeeecch-hhhcccccccCHHHHHHHhhhcchhhhhcC-CceeEEEEEEccCCCceeEEEEE
Q 004945 117 DYEGAPSGGWEFSTGGMDHVRVHPK-FLHSNATSHKWALGAFAELLDNSLDEVCNG-ATYSNIDMLINRKDGSRMLLIED 194 (722)
Q Consensus 117 ~y~~~~~~~~~~~~~~~~~~~v~p~-fLhSnstsh~~~fsAIAELIDNSiDA~~~g-At~V~IdI~~~~~~g~~~I~I~D 194 (722)
+|+...... -.+++|++..|- |+=+... ..-+...|.||||||+|+..++ |+.|.|.|. . + ..|.|.|
T Consensus 4 ~y~~~~i~~----l~~le~vr~rPgmYiG~~~~-~~gl~~lv~ElvdNsiDea~~g~~~~I~V~i~--~-~--g~i~V~D 73 (220)
T 4duh_A 4 SYDSSSIKV----LKGLDAVRKRPGMYIGDTDD-GTGLHHMVFEVVDNAIDEALAGHCKEIIVTIH--A-D--NSVSVQD 73 (220)
T ss_dssp ---------------CHHHHHHSTHHHHCCSSS-SHHHHHHHHHHHHHHHHHHHHSCCCEEEEEEC--T-T--SCEEEEE
T ss_pred ccChhHcEE----echhHHHHhCCceEECCCCC-cccHHHHHHHHHHHHHHHHhcCCCCEEEEEEe--C-C--CcEEEEE
Confidence 566665433 267899999997 4433322 2567889999999999997654 788777763 2 1 3799999
Q ss_pred cCCCCCHHHH--------Hhhh-hccccccccC---CcccCcccccccccccccCCeEEEEeeecC
Q 004945 195 NGGGMNPDKM--------RHCM-SLGYSAKSKA---ANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (722)
Q Consensus 195 NG~GMs~eeL--------~~~l-~~G~SsK~r~---~~~IGrfGvGfKsAsmrLG~~v~V~SR~~g 248 (722)
||.||+.+.. .-+| .+...+|..+ ....|..|+|++... .|...++|.+++.+
T Consensus 74 nGrGIp~~~~~~~~~~~~e~i~t~lhag~Kfd~~~yk~SgGlhGvG~svvN-AlS~~l~v~v~r~g 138 (220)
T 4duh_A 74 DGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVN-ALSQKLELVIQREG 138 (220)
T ss_dssp CSSCCCCSEETTTTEEHHHHHHHSTTCSSCCCTTC--------CCCHHHHH-HTEEEEEEEEEETT
T ss_pred CCcCcccccccccCcchhhheeeecccCCCcCCCccccccCccceecchhc-ccccceEEEEEECC
Confidence 9999999863 2334 3555555432 246799999997655 48889999998865
No 20
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=98.88 E-value=3.2e-09 Score=107.75 Aligned_cols=123 Identities=22% Similarity=0.279 Sum_probs=76.9
Q ss_pred cccCCCCCCCCCccccCCCcceeeecch-hhhcccccccCHHHHHHHhhhcchhhhhcC-CceeEEEEEEccCCCceeEE
Q 004945 114 KAGDYEGAPSGGWEFSTGGMDHVRVHPK-FLHSNATSHKWALGAFAELLDNSLDEVCNG-ATYSNIDMLINRKDGSRMLL 191 (722)
Q Consensus 114 kag~y~~~~~~~~~~~~~~~~~~~v~p~-fLhSnstsh~~~fsAIAELIDNSiDA~~~g-At~V~IdI~~~~~~g~~~I~ 191 (722)
++.+|+...... -.+++|++..|. |+-+.. ..-+...+.||||||+|+..++ ++.|.|.| +. ...|.
T Consensus 7 ~~~~y~~~~i~~----l~~le~vr~RPgmYiGs~~--~~gl~~~v~Eiv~NaiD~~~~g~~~~I~V~i--~~---~g~i~ 75 (226)
T 4emv_A 7 NINNYNDDAIQV----LEGLDAVRKRPGMYIGSTD--GAGLHHLVWEIVDNAVDEALSGFGDRIDVTI--NK---DGSLT 75 (226)
T ss_dssp ----------CC----CBCTHHHHHCHHHHHSCSS--HHHHHHHHHHHHHHHHHHHHTTCCSEEEEEE--CT---TSCEE
T ss_pred chhcCChhhcEE----cchhHHHhhCCceEEcCCC--cccHHHHHHHHHHHHHHHHhcCCCcEEEEEE--eC---CCeEE
Confidence 345687775443 368999999997 554433 3456678999999999997653 67766665 33 13799
Q ss_pred EEEcCCCCCHHH-------HHhhhh-ccccccccC---CcccCcccccccccccccCCeEEEEeeecC
Q 004945 192 IEDNGGGMNPDK-------MRHCMS-LGYSAKSKA---ANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (722)
Q Consensus 192 I~DNG~GMs~ee-------L~~~l~-~G~SsK~r~---~~~IGrfGvGfKsAsmrLG~~v~V~SR~~g 248 (722)
|.|||.||+.+. +.-+|. +...+|..+ ....|..|+|++... .|...+.|.+++.+
T Consensus 76 V~DnG~GIp~~~h~~~~~~~e~v~t~lhag~Kfd~~~yk~SgGlhGvG~svvN-ALS~~l~v~v~r~g 142 (226)
T 4emv_A 76 VQDHGRGMPTGMHAMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVN-ALSSWLEVEITRDG 142 (226)
T ss_dssp EEECSSCCCCSBCGGGCBHHHHHHHCBC--------------CGGGCCHHHHH-HTEEEEEEEEEETT
T ss_pred EEEcCCCccccccccCceehheeEEeecccCccCccceEeccccccccchhhh-hcccceEEEEEeCC
Confidence 999999999988 555564 555566432 346799999997655 48889999999865
No 21
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=98.86 E-value=1.3e-09 Score=108.28 Aligned_cols=106 Identities=26% Similarity=0.295 Sum_probs=64.7
Q ss_pred Ccceeeecch-hhhcccccccCHHHHHHHhhhcchhhhhcC-CceeEEEEEEccCCCceeEEEEEcCCCCCHHHH-----
Q 004945 132 GMDHVRVHPK-FLHSNATSHKWALGAFAELLDNSLDEVCNG-ATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKM----- 204 (722)
Q Consensus 132 ~~~~~~v~p~-fLhSnstsh~~~fsAIAELIDNSiDA~~~g-At~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL----- 204 (722)
+|++|+.-|- |+-+ ..+..+|.|||+||+||..++ |+.|.|.|. . + ..|.|.|||.||+.+++
T Consensus 1 gle~vr~rpgmyig~-----~~~~~~v~Elv~NsiDa~~~g~a~~I~V~i~--~-~--g~i~V~DnG~GIp~~~~~~~~~ 70 (201)
T 3fv5_A 1 GLEPVRRRPGMYTDT-----TRPNHLGQEVIDNSVDEALAGHAKRVDVILH--A-D--QSLEVIDDGRGMPVDIHPEEGV 70 (201)
T ss_dssp CCHHHHHCGGGTSCT-----TSTHHHHHHHHHHHHHHHHTTCCSEEEEEEC--T-T--SCEEEEECSSCCCCSBCTTCSS
T ss_pred CchhhccCCccEECC-----CChhhhhHHHHHHHHHHHhcCCCcEEEEEEe--C-C--CEEEEEECCCCcCcccccccCc
Confidence 4566777665 3332 123678999999999998777 998888773 2 2 38999999999999884
Q ss_pred ---Hhhh-hccccccccC---CcccCcccccccccccccCCeEEEEeeecC
Q 004945 205 ---RHCM-SLGYSAKSKA---ANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (722)
Q Consensus 205 ---~~~l-~~G~SsK~r~---~~~IGrfGvGfKsAsmrLG~~v~V~SR~~g 248 (722)
..+| .+..++|..+ ....|..|+|+++.. .++..++|.|++.+
T Consensus 71 ~~~e~i~~~~hatsK~~~~~~~~s~GfrGeglssin-alS~~l~v~t~~~g 120 (201)
T 3fv5_A 71 PAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVN-ALSKRVEVNVRRDG 120 (201)
T ss_dssp BHHHHHHHCC---------------------CHHHH-HTEEEEEEEEEETT
T ss_pred chhheeeeeeccccCcCCCcccccCcccceecchhh-cccceEEEEEEecC
Confidence 3323 4555666432 236899999997655 47789999999864
No 22
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=98.59 E-value=3.2e-08 Score=107.46 Aligned_cols=107 Identities=26% Similarity=0.302 Sum_probs=80.3
Q ss_pred CCcceeeecch-hhhcccccccCHHHHHHHhhhcchhhhhcC-CceeEEEEEEccCCCceeEEEEEcCCCCCHHH-----
Q 004945 131 GGMDHVRVHPK-FLHSNATSHKWALGAFAELLDNSLDEVCNG-ATYSNIDMLINRKDGSRMLLIEDNGGGMNPDK----- 203 (722)
Q Consensus 131 ~~~~~~~v~p~-fLhSnstsh~~~fsAIAELIDNSiDA~~~g-At~V~IdI~~~~~~g~~~I~I~DNG~GMs~ee----- 203 (722)
.+++|++.-|- |+-+... ..+|.||||||+|+..++ |+.|.|.|. . + ..|.|.|||.||+.++
T Consensus 14 ~gle~vr~RPgmYiGs~~~-----~~lv~ElvdNsiD~a~~g~a~~I~V~i~--~-~--g~I~V~DnG~GIp~~~~~~~~ 83 (390)
T 1s16_A 14 TGLEPVRRRPGMYTDTTRP-----NHLGQEVIDNSVDEALAGHAKRVDVILH--A-D--QSLEVIDDGRGMPVDIHPEEG 83 (390)
T ss_dssp CTTHHHHHCGGGTSCTTST-----HHHHHHHHHHHHHHHHTTCCSEEEEEEC--T-T--SCEEEEECSSCCCCSBCTTTC
T ss_pred chhHHHhhCCceeecCCcH-----HHHHHHHHHHHHHHHhcCCCCEEEEEEe--c-C--CEEEEEECCCCcCcccccccC
Confidence 57899999887 5544444 468999999999987666 888777773 2 2 3899999999999988
Q ss_pred ---HHhhhh-ccccccccC---CcccCcccccccccccccCCeEEEEeeecC
Q 004945 204 ---MRHCMS-LGYSAKSKA---ANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (722)
Q Consensus 204 ---L~~~l~-~G~SsK~r~---~~~IGrfGvGfKsAsmrLG~~v~V~SR~~g 248 (722)
+..+|. +...+|..+ ....|..|+|++... .++..++|.|++.+
T Consensus 84 ~~~~e~v~~~lhagsKf~~~~~~~sgGl~GvGls~vn-alS~~l~v~~~r~g 134 (390)
T 1s16_A 84 VPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVN-ALSKRVEVNVRRDG 134 (390)
T ss_dssp SBHHHHHHHCTTEESCSSSSSCSSCSCCSSCHHHHHH-HTEEEEEEEEEETT
T ss_pred cchhhheeeeecccCCcCCCcccccCCccccchHHHH-HhhcccEEEEEECC
Confidence 566664 566666422 236799999997655 47788999999754
No 23
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=98.58 E-value=9.6e-08 Score=104.39 Aligned_cols=118 Identities=24% Similarity=0.305 Sum_probs=66.6
Q ss_pred cCCCCCCCCCccccCCCcceeeecch-hhhcccccccCHHHHHHHhhhcchhhhhcC-CceeEEEEEEccCCCceeEEEE
Q 004945 116 GDYEGAPSGGWEFSTGGMDHVRVHPK-FLHSNATSHKWALGAFAELLDNSLDEVCNG-ATYSNIDMLINRKDGSRMLLIE 193 (722)
Q Consensus 116 g~y~~~~~~~~~~~~~~~~~~~v~p~-fLhSnstsh~~~fsAIAELIDNSiDA~~~g-At~V~IdI~~~~~~g~~~I~I~ 193 (722)
.+|+....... .++++|+.-|- |+-+... ...+.||||||+|+..++ |+.|.|.| .. ...|.|.
T Consensus 22 ~~Y~a~~I~vL----~glE~VRkRPgMYiGst~~-----~hlv~EivdNsiDea~ag~~~~I~V~i--~~---dgsI~V~ 87 (408)
T 3lnu_A 22 TRYNAADIEVL----SGLDPVKRRPGMYTDTARP-----NHLAQEVIDNSVDEALAGHAKQIEVTL--YK---DGSCEVS 87 (408)
T ss_dssp ----------------CCHHHHHCGGGTSCTTST-----HHHHHHHHHHHHHHHHTTSCCEEEEEE--CT---TSCEEEE
T ss_pred CCcCHhHceec----cccHHHhcCCccEECCCCc-----chhhHHHHHHHHHHhhcCCCceEEEEE--eC---CCeEEEE
Confidence 46887765442 57899999886 5544322 568999999999987654 78777766 32 2379999
Q ss_pred EcCCCCCHHHH--------Hhhhh-ccccccccC---CcccCcccccccccccccCCeEEEEeeecC
Q 004945 194 DNGGGMNPDKM--------RHCMS-LGYSAKSKA---ANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (722)
Q Consensus 194 DNG~GMs~eeL--------~~~l~-~G~SsK~r~---~~~IGrfGvGfKsAsmrLG~~v~V~SR~~g 248 (722)
|||.||+.+.. .-+|. +....|..+ ....|..|+|++... .|...+.|.+++.|
T Consensus 88 DnGrGIPv~~h~~~~~~~~e~i~t~lhaggKfd~~~ykvSgGlhGvG~svVN-ALS~~l~v~v~rdG 153 (408)
T 3lnu_A 88 DDGRGMPVDIHPEEKIPGVELILTRLHAGGKFNNRNYTFSGGLHGVGVSVVN-ALSTKVELFIKREG 153 (408)
T ss_dssp ECSSCCCCSBCTTTCSBHHHHHHHCC--------------------CHHHHH-HTEEEEEEEEEETT
T ss_pred EcCCCCCcccccccCCcchheEEEecccCCCcCCCceeecCCccccccceeh-hccCeEEEEEEECC
Confidence 99999999863 23353 444455322 246799999987655 48889999999865
No 24
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=98.55 E-value=4.6e-08 Score=106.28 Aligned_cols=111 Identities=21% Similarity=0.279 Sum_probs=82.1
Q ss_pred CCcceeeecch-hhhcccccccCHHHHHHHhhhcchhhhhcC-CceeEEEEEEccCCCceeEEEEEcCCCCCHHH-----
Q 004945 131 GGMDHVRVHPK-FLHSNATSHKWALGAFAELLDNSLDEVCNG-ATYSNIDMLINRKDGSRMLLIEDNGGGMNPDK----- 203 (722)
Q Consensus 131 ~~~~~~~v~p~-fLhSnstsh~~~fsAIAELIDNSiDA~~~g-At~V~IdI~~~~~~g~~~I~I~DNG~GMs~ee----- 203 (722)
.+++|++.-|- |+-+.... .-+...|.||||||+||..++ |+.|.|.|.. + ..|.|.|||.||+.++
T Consensus 13 ~gle~vrkRPgmYiGst~~~-~gl~~lv~ElvdNsiDea~~g~a~~I~V~i~~---~--g~I~V~DnG~GIp~~~~~~~~ 86 (391)
T 1ei1_A 13 KGLDAVRKRPGMYIGDTDDG-TGLHHMVFEVVDNAIDEALAGHCKEIIVTIHA---D--NSVSVQDDGRGIPTGIHPEEG 86 (391)
T ss_dssp CTTHHHHHCTHHHHCCSSSS-HHHHHHHHHHHHHHHHHHHTTCCCEEEEEECT---T--SCEEEEECSSCCCCSBCTTTS
T ss_pred chhHHHHcCCCeEECCCCCC-cCHHHHHHHHHHhHHHHHhcCCCCEEEEEEeC---C--CEEEEEECCCCcccCcccccC
Confidence 57899999987 54333221 267889999999999998777 8887777732 2 3899999999999988
Q ss_pred ---HHhhhh-ccccccccC---CcccCcccccccccccccCCeEEEEeeecC
Q 004945 204 ---MRHCMS-LGYSAKSKA---ANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (722)
Q Consensus 204 ---L~~~l~-~G~SsK~r~---~~~IGrfGvGfKsAsmrLG~~v~V~SR~~g 248 (722)
+.-+|. +...+|..+ ....|..|+|++... .++..++|.|++.+
T Consensus 87 ~~~~elv~~~lhagsKf~~~~~~vSgGl~GvGls~vn-alS~~l~v~~~r~g 137 (391)
T 1ei1_A 87 VSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVN-ALSQKLELVIQREG 137 (391)
T ss_dssp SBHHHHHHHSTTEESCSSSSSCSSCSCCSSCHHHHHH-HTEEEEEEEEEETT
T ss_pred cchHHHhheeccccCCcCCCcccccCCccccchHHHH-HhcCeEEEEEEeCC
Confidence 344565 666666432 236799999997655 47788999998754
No 25
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=98.25 E-value=3.9e-07 Score=98.84 Aligned_cols=110 Identities=29% Similarity=0.353 Sum_probs=78.3
Q ss_pred CCcceeeecch-hhhcccccccCHHHHHHHhhhcchhhhhcC-CceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHh--
Q 004945 131 GGMDHVRVHPK-FLHSNATSHKWALGAFAELLDNSLDEVCNG-ATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRH-- 206 (722)
Q Consensus 131 ~~~~~~~v~p~-fLhSnstsh~~~fsAIAELIDNSiDA~~~g-At~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~-- 206 (722)
.+++|++..|. |+-+. ...-+...|.|||+||+|+..++ ++.|.|.+ .. + ..|.|.|||.||+.+++.+
T Consensus 12 ~~le~vr~rpgmyiGs~--~~~g~~~~v~Elv~N~iD~a~~~~~~~I~V~i--~~-~--~~i~V~DnG~GIp~~~~~~~~ 84 (390)
T 1kij_A 12 KGLEGVRHRPAMYIGGT--GVEGYHHLFKEILDNAVDEALAGYATEILVRL--NE-D--GSLTVEDNGRGIPVDLMPEEG 84 (390)
T ss_dssp CTTHHHHHCTHHHHSCS--SHHHHHHHHHHHHHHHHHHHHTTSCCEEEEEE--CT-T--SCEEEEECSSCCCCSEETTTT
T ss_pred chhHHHhcCCCcEEccC--CcchHHHHHHHHHHHHHHHhhhCCCCEEEEEE--Ec-C--CEEEEEEcCCCCCHHHhhhcc
Confidence 57889999887 55433 23456678999999999986433 67766666 32 1 3899999999999998765
Q ss_pred ------hhh-ccccccccC---CcccCcccccccccccccCCeEEEEeeecC
Q 004945 207 ------CMS-LGYSAKSKA---ANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (722)
Q Consensus 207 ------~l~-~G~SsK~r~---~~~IGrfGvGfKsAsmrLG~~v~V~SR~~g 248 (722)
+|. +...+|..+ ....|..|+|++.+. .++..+.|.|+..+
T Consensus 85 ~~~~e~if~~~~~~~kf~~~~~~~s~G~~G~Gls~v~-als~~~~v~t~~~g 135 (390)
T 1kij_A 85 KPAVEVIYNTLHSGGKFEQGAYKVSGGLHGVGASVVN-ALSEWTVVEVFREG 135 (390)
T ss_dssp EEHHHHHHHSSCEESGGGGSSCCCCSCSSTTSHHHHH-HTEEEEEEEEEETT
T ss_pred ccchhhheeeeeecccccCccccccCCCCCcceeeec-ccccceEEEEecCC
Confidence 453 444444211 235689999997665 48888999999754
No 26
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=98.23 E-value=2.3e-06 Score=85.10 Aligned_cols=98 Identities=24% Similarity=0.309 Sum_probs=63.0
Q ss_pred Ccceeeecch-hhhcccccccCHHHHHHHhhhcchhhhhcC-CceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhh
Q 004945 132 GMDHVRVHPK-FLHSNATSHKWALGAFAELLDNSLDEVCNG-ATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMS 209 (722)
Q Consensus 132 ~~~~~~v~p~-fLhSnstsh~~~fsAIAELIDNSiDA~~~g-At~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~ 209 (722)
+++|++.-|- |+-+. ...-+...|.||||||+|+..++ |+.|.|.|..+ ..|.|.|||.||+.+.-
T Consensus 12 ~le~vr~RPgmYiGs~--~~~gl~~~v~Elv~NsiD~~~ag~~~~I~V~i~~~-----g~i~V~DnG~Gip~~~h----- 79 (198)
T 3ttz_A 12 GLEAVRKRPGMYIGST--SERGLHHLVWEIVDNSIDEALAGYANQIEVVIEKD-----NWIKVTDNGRGIPVDIQ----- 79 (198)
T ss_dssp HHHHHHHSHHHHHSCS--SHHHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEGG-----GEEEEEECSSCCCCSBC-----
T ss_pred chHHHhcCCCcEECCC--CCcchHHHHHHHHHHHHhHHhcCCCcEEEEEEeCC-----CeEEEEECCCCcccccc-----
Confidence 4667777665 44332 23556778999999999987667 88888877432 38999999999998621
Q ss_pred ccccccccCCcccCcccccccccccccCCeEEEEeeecC
Q 004945 210 LGYSAKSKAANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (722)
Q Consensus 210 ~G~SsK~r~~~~IGrfGvGfKsAsmrLG~~v~V~SR~~g 248 (722)
..+|......+ |+ ++ +.-.|...+.|.+++.|
T Consensus 80 --~~~~~~~~e~i--~t--~S-vVNALS~~l~v~v~r~g 111 (198)
T 3ttz_A 80 --EKMGRPAVEVI--LT--SS-VVNALSQDLEVYVHRNE 111 (198)
T ss_dssp --TTTSSBHHHHH--HH--TC-HHHHTEEEEEEEEEETT
T ss_pred --CcCCCcccccc--ce--eE-ehhhhcCeEEEEEEECC
Confidence 11121111111 22 22 22346788999998865
No 27
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=98.17 E-value=1.6e-06 Score=93.48 Aligned_cols=106 Identities=15% Similarity=0.052 Sum_probs=71.1
Q ss_pred CCcceeeecch-hhhcccccccCHHHHHHHhhhcchhhhhcC-CceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhh
Q 004945 131 GGMDHVRVHPK-FLHSNATSHKWALGAFAELLDNSLDEVCNG-ATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCM 208 (722)
Q Consensus 131 ~~~~~~~v~p~-fLhSnstsh~~~fsAIAELIDNSiDA~~~g-At~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l 208 (722)
..++|++.-|- |+=+. ...-+..++.||||||+||..++ |+.|.|.|. . + ..|.|.|||.||+. |+.-
T Consensus 10 ~~lE~vrkRPgmYiGs~--~~~gl~~~v~ElvdNsiDe~~~g~a~~I~V~i~--~-~--g~I~V~DnGrGIp~-e~v~-- 79 (369)
T 3cwv_A 10 GIVENVRKRPGMYCGDV--GEYGLHHLVYFLLDVAYEEARRGECRDVVLEVG--G-D--GSIALFCTSRTVTA-ENLV-- 79 (369)
T ss_dssp CHHHHHHHSTHHHHSCS--SHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEEC--T-T--SCEEEEEEESSCCH-HHHH--
T ss_pred cHhHHHHhCCceEEcCC--CCchHHHHHHHHHhhhHhHHhhCCCCEEEEEEe--C-C--CEEEEEECCCCcCH-hHee--
Confidence 34677777775 44333 23577889999999999987654 888777774 2 2 28999999999999 4432
Q ss_pred hccccccccCC---cccCcccccccccccccCCeEEEEeeecC
Q 004945 209 SLGYSAKSKAA---NTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (722)
Q Consensus 209 ~~G~SsK~r~~---~~IGrfGvGfKsAsmrLG~~v~V~SR~~g 248 (722)
.+...+|..+. ..-+.-| |++... .++..++|.|++.+
T Consensus 80 ~lhagsKf~~~~~~~~y~vsG-Gls~vn-alSs~l~v~t~r~g 120 (369)
T 3cwv_A 80 RVATGAGFLGRPPGDGWGWDS-MLVVSL-ALSSRYQVDIWADG 120 (369)
T ss_dssp HHHTTTTGGGSSCCCSTTTTS-SHHHHH-HTEEEEEEEEEETT
T ss_pred eeecCCCcCCCcccccccccC-HHHHHH-HhhceEEEEEEECC
Confidence 44455554331 2222235 765444 47789999999754
No 28
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=98.14 E-value=1.8e-06 Score=95.83 Aligned_cols=98 Identities=21% Similarity=0.252 Sum_probs=68.6
Q ss_pred cCHHHHHHHhhhcchhhhhcCCc--eeEEEEEEcc-CCCceeEEEEEcCCCCCHHHHHhhhh-ccccccccCCcccCccc
Q 004945 151 KWALGAFAELLDNSLDEVCNGAT--YSNIDMLINR-KDGSRMLLIEDNGGGMNPDKMRHCMS-LGYSAKSKAANTIGQYG 226 (722)
Q Consensus 151 ~~~fsAIAELIDNSiDA~~~gAt--~V~IdI~~~~-~~g~~~I~I~DNG~GMs~eeL~~~l~-~G~SsK~r~~~~IGrfG 226 (722)
..+..+|.|||+||+||...+.. .|.|.+.... ..+...|.|.|||.||+++++..++. |..++|.......|..|
T Consensus 31 ~~L~qvl~nLv~NAida~~~gg~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~~~~~~~gg~G 110 (471)
T 1mu5_A 31 RALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYG 110 (471)
T ss_dssp HHHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEETTTTEEEEEEECCSCCCCGGGHHHHHHCCCCC-CCCCSCCSCSCT
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEECCCcCcEEEEEEEECCCCCCHHHHHHHhcccccccccccccCCCCce
Confidence 45678999999999999532211 6777765421 12456799999999999999999886 44555544445678899
Q ss_pred ccccccc---cccCCe-EEEEeeecC
Q 004945 227 NGFKTST---MRLGAD-VIVFSCCCG 248 (722)
Q Consensus 227 vGfKsAs---mrLG~~-v~V~SR~~g 248 (722)
+||..+. -.+|.. +.|.|+..+
T Consensus 111 LGL~iv~~l~~~~gG~~i~v~S~~~~ 136 (471)
T 1mu5_A 111 LGVKAAVLYSQMHQDKPIEIETSPVN 136 (471)
T ss_dssp TTHHHHHHHHHHHCCCCEEEEEECTT
T ss_pred eeHHHHHHHHHHhCCCceeEEEecCC
Confidence 9986542 223444 999998753
No 29
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=98.08 E-value=1.8e-06 Score=94.13 Aligned_cols=92 Identities=18% Similarity=0.144 Sum_probs=67.6
Q ss_pred cCHHHHHHHhhhcchhhhh--cCCceeEEEEEEccCCCceeEEEEEcCCCCCHHH--------HHhhhh-ccccccccC-
Q 004945 151 KWALGAFAELLDNSLDEVC--NGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDK--------MRHCMS-LGYSAKSKA- 218 (722)
Q Consensus 151 ~~~fsAIAELIDNSiDA~~--~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~ee--------L~~~l~-~G~SsK~r~- 218 (722)
.-+...+.||||||+||.. ..|+.|.|.|..+ ...|.|.|||.||+.++ +.-+|. +...+|..+
T Consensus 51 ~GL~~lv~EivdNsiDe~~~~g~~~~I~V~i~~~----~~~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lhagsKf~~~ 126 (400)
T 1zxm_A 51 PGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPE----NNLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSNYDDD 126 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETT----TTEEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEESCCCGG
T ss_pred chHHHHHHHHHhhHHhHHhhcCCCceEEEEEECC----CCEEEEEECCCcccCccccccCccchhheeeeecccCCCCCC
Confidence 4556789999999999962 2378877777432 25899999999999887 444565 555555422
Q ss_pred --CcccCcccccccccccccCCeEEEEeeec
Q 004945 219 --ANTIGQYGNGFKTSTMRLGADVIVFSCCC 247 (722)
Q Consensus 219 --~~~IGrfGvGfKsAsmrLG~~v~V~SR~~ 247 (722)
.-..|..|+|++... .+...++|.++..
T Consensus 127 ~ykvSgGlhGvGlsvVn-AlS~~l~v~v~~~ 156 (400)
T 1zxm_A 127 EKKVTGGRNGYGAKLCN-IFSTKFTVETASR 156 (400)
T ss_dssp GCCCCSCCSSCHHHHHH-HTEEEEEEEEEET
T ss_pred cccccCCccccceeeeE-EeccceEEEEecC
Confidence 237899999987655 4888999998874
No 30
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=98.05 E-value=2.8e-06 Score=95.58 Aligned_cols=98 Identities=21% Similarity=0.252 Sum_probs=69.4
Q ss_pred cCHHHHHHHhhhcchhhhhcCCc--eeEEEEEEcc-CCCceeEEEEEcCCCCCHHHHHhhhh-ccccccccCCcccCccc
Q 004945 151 KWALGAFAELLDNSLDEVCNGAT--YSNIDMLINR-KDGSRMLLIEDNGGGMNPDKMRHCMS-LGYSAKSKAANTIGQYG 226 (722)
Q Consensus 151 ~~~fsAIAELIDNSiDA~~~gAt--~V~IdI~~~~-~~g~~~I~I~DNG~GMs~eeL~~~l~-~G~SsK~r~~~~IGrfG 226 (722)
..+..+|.|||+||+||...+.. .|.|.+.... ..+...|.|.|||.||+++++..++. |.+++|.+.....|..|
T Consensus 30 ~~L~qvl~NLV~NAida~~~gg~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~~~~~~~gg~G 109 (530)
T 2zbk_B 30 RALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYG 109 (530)
T ss_dssp HHHHHHHHHHHHHHHTTTTTTTCCCCCEEEEEEEETTTTEEEEEEECCSCCCCGGGSHHHHTSCCCSCCCCCSCCSCSSS
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEECCCcCceEEEEEEECCCCCCHHHHHHHhccccccCCcccccCCCCcc
Confidence 45678999999999999432211 6777775432 12456899999999999999999886 44555544445778999
Q ss_pred ccccccc---cccCCe-EEEEeeecC
Q 004945 227 NGFKTST---MRLGAD-VIVFSCCCG 248 (722)
Q Consensus 227 vGfKsAs---mrLG~~-v~V~SR~~g 248 (722)
+||..+. -.+|.. +.|.|+..+
T Consensus 110 LGLsiv~~l~~~~gG~~I~V~S~~~~ 135 (530)
T 2zbk_B 110 LGVKAAVLYSQMHQDKPIEIETSPVN 135 (530)
T ss_dssp SHHHHHHHHHHHHCCCCEEEEEECTT
T ss_pred chHHHHHHHHHHhCCCceEEEEecCC
Confidence 9986542 123444 999998753
No 31
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=97.73 E-value=7.3e-05 Score=67.30 Aligned_cols=86 Identities=16% Similarity=0.220 Sum_probs=62.1
Q ss_pred CHHHHHHHhhhcchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCcccccccc
Q 004945 152 WALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKT 231 (722)
Q Consensus 152 ~~fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~~IGrfGvGfKs 231 (722)
.+..+|.+||+||+.+. ...|.|.+... ++.-.|.|.|||.||+.+++.+.+...++.+.. -+..|+||..
T Consensus 44 ~l~~il~nLl~NAi~~~---~~~i~i~~~~~--~~~~~i~i~D~G~gi~~~~~~~~f~~~~~~~~~----~~g~GlGL~i 114 (152)
T 1id0_A 44 DFVEVMGNVLDNACKYC---LEFVEISARQT--DEHLYIVVEDDGPGIPLSKREVIFDRGQRVDTL----RPGQGVGLAV 114 (152)
T ss_dssp HHHHHHHHHHHHHHHHC---SSEEEEEEEEC--SSCEEEEEEESSSCCCGGGTTGGGSCCCCTTCC----CTTCCSCHHH
T ss_pred HHHHHHHHHHHHHHHhC---cCeEEEEEEec--CCEEEEEEEeCCCCcCHHHHHHHhccceeccCC----CCCcccCHHH
Confidence 35678999999999983 33666666543 456789999999999999999988765554321 2456888753
Q ss_pred c---ccccCCeEEEEeee
Q 004945 232 S---TMRLGADVIVFSCC 246 (722)
Q Consensus 232 A---smrLG~~v~V~SR~ 246 (722)
+ .-.+|-++.+.+..
T Consensus 115 ~~~~~~~~gG~i~~~~~~ 132 (152)
T 1id0_A 115 AREITEQYEGKIVAGESM 132 (152)
T ss_dssp HHHHHHHTTCEEEEEECT
T ss_pred HHHHHHHcCCEEEEEeCC
Confidence 3 34578888887764
No 32
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=97.71 E-value=3.7e-05 Score=75.58 Aligned_cols=93 Identities=20% Similarity=0.252 Sum_probs=60.7
Q ss_pred CHHHHHHHhhhcchhhhhcCC--ceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCcccccc
Q 004945 152 WALGAFAELLDNSLDEVCNGA--TYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGF 229 (722)
Q Consensus 152 ~~fsAIAELIDNSiDA~~~gA--t~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~~IGrfGvGf 229 (722)
.+..+|..||+||+.+...+. ..|.|.+... ++.-.|.|.|||.||+++++.+.|...++.+.......+-.|+||
T Consensus 138 ~l~~il~NLl~NAik~~~~~~~~~~i~i~~~~~--~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~G~GLGL 215 (258)
T 2c2a_A 138 RIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEK--DGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGL 215 (258)
T ss_dssp HHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEE--TTEEEEEEEECSSCCCGGGTTGGGSTTCCCC---------CCCTH
T ss_pred HHHHHHHHHHHHHHhcCcCCCCceeEEEEEecC--CCeEEEEEEecCCCCCHHHHHhhccccccCCCCCCCCCCCcchHH
Confidence 456789999999999843222 2355554332 356779999999999999999998755544322122234478887
Q ss_pred ccc---ccccCCeEEEEeee
Q 004945 230 KTS---TMRLGADVIVFSCC 246 (722)
Q Consensus 230 KsA---smrLG~~v~V~SR~ 246 (722)
..+ .-.+|-.+.|.|..
T Consensus 216 ~i~~~iv~~~gG~i~v~s~~ 235 (258)
T 2c2a_A 216 AITKEIVELHGGRIWVESEV 235 (258)
T ss_dssp HHHHHHHHHTTCEEEEEEET
T ss_pred HHHHHHHHHcCCEEEEEecC
Confidence 532 33578899998875
No 33
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=97.71 E-value=2.4e-05 Score=89.64 Aligned_cols=97 Identities=21% Similarity=0.297 Sum_probs=64.1
Q ss_pred cCHHHHHHHhhhcchhhhhcC--CceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhh-cccccccc-CCcccCccc
Q 004945 151 KWALGAFAELLDNSLDEVCNG--ATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMS-LGYSAKSK-AANTIGQYG 226 (722)
Q Consensus 151 ~~~fsAIAELIDNSiDA~~~g--At~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~-~G~SsK~r-~~~~IGrfG 226 (722)
..+..+|.|||+||+||...+ +..|.|.+..+. .+...|.|.|||.||+.+++.++|. +.+++|.. .....|..|
T Consensus 36 ~~L~~Vl~ELV~NAIDa~~~~g~~~~I~V~i~~~~-~~~~~I~V~DnG~GIp~e~l~~iF~~~~atskf~~~~~s~Gg~G 114 (621)
T 2q2e_B 36 RSLITTVKEAVDNALDACEEAGILPDILVQVERTG-PDYVTVIIEDNGPGIVREQIPKVFAKLLYGSRFHALKQSRGQQG 114 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSCSCEEEECCEEET-TTEEEEEEECCSCCCCGGGHHHHHSCCCCC--CCCCC-CCSSSS
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEECC-CcEEEEEEEECCCCCCHHHHHHHhhhhccCCccccccccCCCce
Confidence 456788999999999995311 116666664431 1345799999999999999999886 43444422 224568999
Q ss_pred ccccccc----cccCCeEEEEeeecC
Q 004945 227 NGFKTST----MRLGADVIVFSCCCG 248 (722)
Q Consensus 227 vGfKsAs----mrLG~~v~V~SR~~g 248 (722)
+|+..+. +.-|..+.|.|+..+
T Consensus 115 lGLsiv~~ls~~~gG~~I~V~S~~~g 140 (621)
T 2q2e_B 115 IGISAAVLYAQMTAGRHTKILSKTSP 140 (621)
T ss_dssp HHHHHHHHHHHHHTCCCCEEEEECSS
T ss_pred echhhhhHHHHHhCCCceeEEeeccC
Confidence 9987542 223333788888754
No 34
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=97.69 E-value=4.1e-05 Score=71.33 Aligned_cols=93 Identities=14% Similarity=0.214 Sum_probs=62.3
Q ss_pred HHHHHHHhhhcchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCccccccccc
Q 004945 153 ALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTS 232 (722)
Q Consensus 153 ~fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~~IGrfGvGfKsA 232 (722)
+..+|.+||+||+.+.. ....+.|.+.....++.-.|.|.|||.||+.+++.+.+...++.........+..|+||..+
T Consensus 44 l~~il~nLl~NAi~~~~-~~~~i~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~lf~~~~~~~~~~~~~~~g~GlGL~iv 122 (177)
T 3sl2_A 44 ITQVLDNIISNALKYSP-EGGHVTFSIDVNEEEELLYISVKDEGIGIPKKDVEKVFDRFYRVDKARTRKLGGTGLGLAIA 122 (177)
T ss_dssp HHHHHHHHHHHHHHTCC-TTCCEEEEEEEETTTTEEEEEEECCSSCCCTTTTTTTTSTTCCCC------CCCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCC-CCCeEEEEEEEccCCCEEEEEEEECCCCCCHHHHHHHHhhhccCCCCCCCCCCCCCcCHHHH
Confidence 56789999999999842 23455666643443456789999999999999999888755543322223345678887633
Q ss_pred ---ccccCCeEEEEeee
Q 004945 233 ---TMRLGADVIVFSCC 246 (722)
Q Consensus 233 ---smrLG~~v~V~SR~ 246 (722)
.-.+|..+.+.+..
T Consensus 123 ~~~~~~~~G~i~i~~~~ 139 (177)
T 3sl2_A 123 KEMVQAHGGDIWADSIE 139 (177)
T ss_dssp HHHHHHTTCCEEEEEET
T ss_pred HHHHHHcCCEEEEEecC
Confidence 33567778887764
No 35
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=97.63 E-value=9.4e-05 Score=67.69 Aligned_cols=88 Identities=16% Similarity=0.147 Sum_probs=63.6
Q ss_pred CHHHHHHHhhhcchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCcccccccc
Q 004945 152 WALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKT 231 (722)
Q Consensus 152 ~~fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~~IGrfGvGfKs 231 (722)
.+..+|.+||+||+.+. ...|.|.+... ++.-.|.|.|||.||+.+++.+.+...++.+.. ..-+..|+||..
T Consensus 47 ~l~~il~nll~NAik~~---~~~I~i~~~~~--~~~~~i~i~D~G~gi~~~~~~~~f~~f~~~~~~--~~~~g~GlGL~i 119 (161)
T 1bxd_A 47 SIKRAVANMVVNAARYG---NGWIKVSSGTE--PNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDSA--RTISGTGLGLAI 119 (161)
T ss_dssp HHHHHHHHHHHHHHTTC---CSCEEEEEEEE--TTEEEEEEEEESSCSCTTGGGCSSCCCCCCSCC--CCCCCCSCCCCT
T ss_pred HHHHHHHHHHHHHHhhc---CCeEEEEEEEc--CCEEEEEEEeCCCCCCHHHHHHhCCCceeCCCC--CCCCCcccCHHH
Confidence 46678999999999982 56677776543 356779999999999999999988755554321 122457888764
Q ss_pred c---ccccCCeEEEEeee
Q 004945 232 S---TMRLGADVIVFSCC 246 (722)
Q Consensus 232 A---smrLG~~v~V~SR~ 246 (722)
+ .-.+|-++.+.+..
T Consensus 120 ~~~~~~~~gG~i~~~~~~ 137 (161)
T 1bxd_A 120 VQRIVDNHNGMLELGTSE 137 (161)
T ss_dssp THHHHHHHTSEEEEEEET
T ss_pred HHHHHHHcCCEEEEEECC
Confidence 3 33467888887764
No 36
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=97.62 E-value=4.7e-05 Score=71.67 Aligned_cols=92 Identities=18% Similarity=0.242 Sum_probs=62.2
Q ss_pred CHHHHHHHhhhcchhhhh-----------cCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHH----------------
Q 004945 152 WALGAFAELLDNSLDEVC-----------NGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKM---------------- 204 (722)
Q Consensus 152 ~~fsAIAELIDNSiDA~~-----------~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL---------------- 204 (722)
.+..+|.+||+||+.+.. .....|.|.+... ++.-.|.|.|||.||+++++
T Consensus 47 ~l~~il~nLl~NAik~~~~~~~~~~~~~~~~~~~I~I~~~~~--~~~~~i~V~D~G~Gi~~~~~~~~~~~~~~~~~~~~~ 124 (189)
T 1i58_A 47 EIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHE--GNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAA 124 (189)
T ss_dssp HHHHHHHHHHHHHHHHTSCCHHHHHHHTSCSSEEEEEEEEEE--TTEEEEEEEECSSCCCHHHHHHHHHHTTSSCHHHHT
T ss_pred HHHHHHHHHHHHHHHhhhccccccccccCCCCCeEEEEEEec--CCEEEEEEEeCCCCcCHHHHhhhhhhccchhhhhhc
Confidence 345669999999999831 2345667766543 35678999999999999987
Q ss_pred --------HhhhhccccccccCCcccCccccccccc---ccccCCeEEEEeee
Q 004945 205 --------RHCMSLGYSAKSKAANTIGQYGNGFKTS---TMRLGADVIVFSCC 246 (722)
Q Consensus 205 --------~~~l~~G~SsK~r~~~~IGrfGvGfKsA---smrLG~~v~V~SR~ 246 (722)
.+.+..+++.+.. ....+..|+||..+ .-.+|..+.|.+..
T Consensus 125 ~~~~~~~~~~if~~~~~~~~~-~~~~~g~GlGL~iv~~~~~~~~G~i~i~s~~ 176 (189)
T 1i58_A 125 TLSDQEILNFLFVPGFSTKEK-VSEVSGRGVGMDVVKNVVESLNGSISIESEK 176 (189)
T ss_dssp TCCHHHHHGGGGSTTCSHHHH-HHGGGTCCCHHHHHHHHHHHTTCEEEEEEET
T ss_pred ccchhhhHHHhcCCccccccc-CCCCCCCccCHHHHHHHHHHcCCEEEEEeCC
Confidence 4556655554421 12234568887543 34578888888874
No 37
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=97.58 E-value=0.0001 Score=78.36 Aligned_cols=93 Identities=18% Similarity=0.320 Sum_probs=63.9
Q ss_pred CHHHHHHHhhhcchhhhhcCC------ceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhcccccccc-----CCc
Q 004945 152 WALGAFAELLDNSLDEVCNGA------TYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSK-----AAN 220 (722)
Q Consensus 152 ~~fsAIAELIDNSiDA~~~gA------t~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r-----~~~ 220 (722)
.+..+|.+||+||+.+...+. ..|.|.+... ++.-.|.|.|+|.||+++++.+.+...++.+.. ...
T Consensus 231 ~L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~~--~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~~~ 308 (394)
T 2btz_A 231 HLYHMLFELFKNAMRATVESHESSLILPPIKVMVALG--EEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGT 308 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTCSCCCCEEEEEEEC--SSEEEEEEEECSCCCCHHHHHHHTCTTTTCCC---------
T ss_pred HHHHHHHHHHHHHHHHhhhccccCCCCCCEEEEEEeC--CCEEEEEEEeCCCCCCHHHHHHHhcccccCCCCCCcccCCC
Confidence 355789999999999965443 2577777543 356789999999999999999999866655432 223
Q ss_pred ccCccccccccc---ccccCCeEEEEeee
Q 004945 221 TIGQYGNGFKTS---TMRLGADVIVFSCC 246 (722)
Q Consensus 221 ~IGrfGvGfKsA---smrLG~~v~V~SR~ 246 (722)
..+-+|+||..+ .-.+|-++.|.|..
T Consensus 309 ~~~G~GLGL~i~~~i~~~~gG~i~v~s~~ 337 (394)
T 2btz_A 309 PLAGFGYGLPISRLYAKYFQGDLQLFSME 337 (394)
T ss_dssp -----CCHHHHHHHHHHHTTCEEEEEEET
T ss_pred CCCCccCCHHHHHHHHHHhCCEEEEEecC
Confidence 456789998533 34578999998874
No 38
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=97.56 E-value=0.00014 Score=65.02 Aligned_cols=86 Identities=10% Similarity=0.056 Sum_probs=62.1
Q ss_pred cCHHHHHHHhhhcchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCccccccc
Q 004945 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (722)
Q Consensus 151 ~~~fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~~IGrfGvGfK 230 (722)
..+..+|.+||+||+.+.. ....|.|.+... ++.-.|.|.|||.||+.+++.+.+...++.+. +..|+||.
T Consensus 46 ~~l~~il~nll~NAi~~~~-~~~~I~i~~~~~--~~~~~i~i~D~G~g~~~~~~~~~f~~~~~~~~------~g~GlGL~ 116 (152)
T 3a0y_A 46 TRIKQVLINLVQNAIEATG-ENGKIKITSEDM--YTKVRVSVWNSGPPIPEELKEKIFSPFFTTKT------QGTGLGLS 116 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCEEEEEEEEC--SSEEEEEEEEESCCCCGGGTTGGGSTTCCCC--------CCCCSHH
T ss_pred HHHHHHHHHHHHHHHHhcC-CCCEEEEEEEec--CCEEEEEEEeCCCCcCHHHHHhHhhhhccCCC------CCCCcCHH
Confidence 3456789999999999842 345667766543 35678999999999999999998876555431 34688886
Q ss_pred cc---cc-ccCCeEEEEee
Q 004945 231 TS---TM-RLGADVIVFSC 245 (722)
Q Consensus 231 sA---sm-rLG~~v~V~SR 245 (722)
.+ .- .+|..+.+.+.
T Consensus 117 i~~~~~~~~~gg~~~~~~~ 135 (152)
T 3a0y_A 117 ICRKIIEDEHGGKIWTENR 135 (152)
T ss_dssp HHHHHHHTTTSCEEEEEEE
T ss_pred HHHHHHHHhCCcEEEEecC
Confidence 54 22 57888887765
No 39
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=97.56 E-value=0.00013 Score=78.11 Aligned_cols=93 Identities=17% Similarity=0.300 Sum_probs=67.6
Q ss_pred CHHHHHHHhhhcchhhhhcCC------ceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhcccccccc------CC
Q 004945 152 WALGAFAELLDNSLDEVCNGA------TYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSK------AA 219 (722)
Q Consensus 152 ~~fsAIAELIDNSiDA~~~gA------t~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r------~~ 219 (722)
.+..+|.+||+||+.+...+. ..|.|.+... ++.-.|.|.|+|.||+++++.+.+...++.+.. ..
T Consensus 243 ~L~~il~NLl~NAik~t~~~~~~~~~~~~I~I~~~~~--~~~v~i~V~D~G~GI~~e~~~~if~~f~~~~~~~~~~~~~~ 320 (407)
T 2q8g_A 243 HLYHMVFELFKNAMRATMEHHANRGVYPPIQVHVTLG--NEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVETSRA 320 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTTCCCCCEEEEEEEC--SSEEEEEEEECSCCCCHHHHGGGGCTTTTCCCCCCSSCCSC
T ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEeC--CCEEEEEEEecCCCCCHHHHHHHhCccccCCCCCCccccCC
Confidence 455789999999999864322 1577777543 356789999999999999999999866654432 12
Q ss_pred cccCccccccccc---ccccCCeEEEEeee
Q 004945 220 NTIGQYGNGFKTS---TMRLGADVIVFSCC 246 (722)
Q Consensus 220 ~~IGrfGvGfKsA---smrLG~~v~V~SR~ 246 (722)
...+-+|+||..+ .-..|-++.|.|..
T Consensus 321 ~~~~G~GLGL~Ivr~i~~~~gG~i~v~s~~ 350 (407)
T 2q8g_A 321 VPLAGFGYGLPISRLYAQYFQGDLKLYSLE 350 (407)
T ss_dssp CCSSCTTCHHHHHHHHHHHTTCEEEEEEET
T ss_pred CCCCCcCCCHHHHHHHHHHhCCEEEEEEcC
Confidence 3456789998533 34578899998875
No 40
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=97.54 E-value=0.00014 Score=65.62 Aligned_cols=88 Identities=15% Similarity=0.135 Sum_probs=57.7
Q ss_pred CHHHHHHHhhhcchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCcccccccc
Q 004945 152 WALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKT 231 (722)
Q Consensus 152 ~~fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~~IGrfGvGfKs 231 (722)
.+..+|.+||+||+.+. .+..|.|.+... ++.-.|.|.|||.||+++++.+.+...++... ..-+..|+||..
T Consensus 46 ~l~~il~nLl~NA~~~~--~~~~I~i~~~~~--~~~~~i~v~D~G~gi~~~~~~~if~~f~~~~~---~~~~g~GlGL~i 118 (150)
T 1ysr_A 46 GLRLAVDNAIANAVKHG--GATLVQLSAVSS--RAGVEIAIDDNGSGVPEGERQVVFERFSRGST---ASHSGSGLGLAL 118 (150)
T ss_dssp HHHHHHHHHHHHHHHTT--CCSEEEEEEEEE--TTEEEEEEEESSSCCCGGGHHHHHTSCC--------------CCCHH
T ss_pred HHHHHHHHHHHHHHhcC--CCcEEEEEEEec--CCEEEEEEEECCCCCCHHHHHHHhcccccCCC---CCCCCCCcCHHH
Confidence 35678999999999983 334666666543 35678999999999999999998875443211 112456888753
Q ss_pred c---ccccCCeEEEEeee
Q 004945 232 S---TMRLGADVIVFSCC 246 (722)
Q Consensus 232 A---smrLG~~v~V~SR~ 246 (722)
+ .-.+|-.+.+.+..
T Consensus 119 ~~~~~~~~gG~i~~~~~~ 136 (150)
T 1ysr_A 119 VAQQAQLHGGTASLENSP 136 (150)
T ss_dssp HHHHHHHTTCEEEEEECT
T ss_pred HHHHHHHcCCEEEEeecC
Confidence 3 34578888887764
No 41
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=97.52 E-value=0.00013 Score=77.68 Aligned_cols=93 Identities=18% Similarity=0.303 Sum_probs=67.5
Q ss_pred CHHHHHHHhhhcchhhhhcCC------ceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhcccccccc------CC
Q 004945 152 WALGAFAELLDNSLDEVCNGA------TYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSK------AA 219 (722)
Q Consensus 152 ~~fsAIAELIDNSiDA~~~gA------t~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r------~~ 219 (722)
.+..+|.+||+||+.+...+. ..|.|.+... ++.-.|.|.|+|.||+++++.+.+...++.+.. ..
T Consensus 230 ~L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~~--~~~v~i~V~D~G~GI~~~~~~~if~~f~~~~~~~~~~~~~~ 307 (394)
T 2e0a_A 230 HLHHMLFELFKNAMRATVEHQENQPSLTPIEVIVVLG--KEDLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVMDNSRN 307 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSSSCCCEEEEEEEC--SSEEEEEEEECSCCCCGGGHHHHTSTTCCSSCCC------C
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCCCCEEEEEEeC--CCEEEEEEEeCCCCcCHHHHHHHhCcCccCCCCCCcCcCCC
Confidence 355789999999999864332 2477777543 356789999999999999999999866655432 22
Q ss_pred cccCccccccccc---ccccCCeEEEEeee
Q 004945 220 NTIGQYGNGFKTS---TMRLGADVIVFSCC 246 (722)
Q Consensus 220 ~~IGrfGvGfKsA---smrLG~~v~V~SR~ 246 (722)
...+-+|+||..+ .-..|-++.|.+..
T Consensus 308 ~~~~G~GLGL~i~~~i~~~~gG~i~v~s~~ 337 (394)
T 2e0a_A 308 APLAGFGYGLPISRLYAKYFQGDLNLYSLS 337 (394)
T ss_dssp CCSSCSSCHHHHHHHHHHHTTCEEEEEEET
T ss_pred CCCCCcccCHHHHHHHHHHhCCEEEEEecC
Confidence 3456789998532 34578899998875
No 42
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=97.51 E-value=7.5e-05 Score=67.25 Aligned_cols=87 Identities=15% Similarity=0.120 Sum_probs=47.8
Q ss_pred CHHHHHHHhhhcchhhhhcCCceeEEEEEEccCCC----------ceeEEEEEcCCCCCHHHHHhhhhccccccccCCcc
Q 004945 152 WALGAFAELLDNSLDEVCNGATYSNIDMLINRKDG----------SRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANT 221 (722)
Q Consensus 152 ~~fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g----------~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~~ 221 (722)
.+..+|.+||+||+.+.......|.|.+.... + .-.|.|.|||.||+++++.+.+...++.+.
T Consensus 48 ~l~~il~nLl~NAik~~~~~~~~I~i~~~~~~--~~~~~~~~~~~~~~i~v~D~G~gi~~~~~~~lf~~~~~~~~----- 120 (160)
T 1r62_A 48 QIEQVLLNIVRNALQALGPEGGEIILRTRTAF--QLTLHGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSGRE----- 120 (160)
T ss_dssp HHHHHHHHHHHHHHHHHGGGCEEEEEEEEEEE--EEEETTEEEEEEEEEEEEEECTTC----------------------
T ss_pred HHHHHHHHHHHHHHHHhhccCCeEEEEEeccc--cccccccccccEEEEEEEeCCCCCCHHHHHHhhCccccCCC-----
Confidence 35678999999999985322566666665432 2 457899999999999999998876555432
Q ss_pred cCccccccccc---ccccCCeEEEEeee
Q 004945 222 IGQYGNGFKTS---TMRLGADVIVFSCC 246 (722)
Q Consensus 222 IGrfGvGfKsA---smrLG~~v~V~SR~ 246 (722)
+..|+||..+ .-.+|-.+.+.+..
T Consensus 121 -~g~GlGL~i~~~~~~~~gG~l~i~s~~ 147 (160)
T 1r62_A 121 -GGTGLGLSIARNLIDQHSGKIEFTSWP 147 (160)
T ss_dssp ----CHHHHHHHHHHHHTTCEEEEEEET
T ss_pred -CCCccCHHHHHHHHHHCCCeEEEEeCC
Confidence 3468887533 33578888887764
No 43
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=97.47 E-value=0.00015 Score=78.00 Aligned_cols=93 Identities=19% Similarity=0.278 Sum_probs=63.6
Q ss_pred CHHHHHHHhhhcchhhhhcC-------CceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhcccccccc------C
Q 004945 152 WALGAFAELLDNSLDEVCNG-------ATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSK------A 218 (722)
Q Consensus 152 ~~fsAIAELIDNSiDA~~~g-------At~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r------~ 218 (722)
.+..+|.+||+||+.+...+ ...|.|.+... ++.-.|.|.|+|.||+++++.+.+...++.+.. .
T Consensus 253 ~L~~vl~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~~--~~~v~I~V~D~G~GI~~e~l~~iF~~f~~~~~~~~~~~~~ 330 (419)
T 1y8o_A 253 HLFHMLFELFKNSMRATVELYEDRKEGYPAVKTLVTLG--KEDLSIKISDLGGGVPLRKIDRLFNYMYSTAPRPSLEPTR 330 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCSSCCCCEEEEEEEC--SSEEEEEEEECSCCCCHHHHGGGGCTTTC-----------
T ss_pred HHHHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEeC--CCEEEEEEEECCCCCCHHHHHHHhCcccccCCCCCccccC
Confidence 34568999999999986432 12577777543 356789999999999999999999866654432 1
Q ss_pred CcccCccccccccc---ccccCCeEEEEeee
Q 004945 219 ANTIGQYGNGFKTS---TMRLGADVIVFSCC 246 (722)
Q Consensus 219 ~~~IGrfGvGfKsA---smrLG~~v~V~SR~ 246 (722)
....+-+|+||..+ .-..|-++.|.|..
T Consensus 331 ~~~~~G~GLGL~I~k~iv~~~gG~I~v~s~~ 361 (419)
T 1y8o_A 331 AAPLAGFGYGLPISRLYARYFQGDLKLYSME 361 (419)
T ss_dssp --CC--CTTHHHHHHHHHHHTTCEEEEEEET
T ss_pred CCCcCCeecCHHHHHHHHHHhCCEEEEEecC
Confidence 23356789998533 34578899998875
No 44
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=97.39 E-value=0.00026 Score=69.40 Aligned_cols=86 Identities=17% Similarity=0.093 Sum_probs=63.1
Q ss_pred CHHHHHHHhhhcchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCcccccccc
Q 004945 152 WALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKT 231 (722)
Q Consensus 152 ~~fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~~IGrfGvGfKs 231 (722)
.+..+|.+||+||+++.. ....|.|.+... ++.-.|.|.|||.||+++.+.+.+...++.+. +..|+||..
T Consensus 155 ~l~~il~nLl~NA~~~~~-~~~~I~i~~~~~--~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~------~g~GlGL~i 225 (268)
T 4ew8_A 155 RLAQTLDHLVENALRQTP-PGGRVTLSARRA--LGEVRLDVSDTGRGVPFHVQAHIFDRFVGRDR------GGPGLGLAL 225 (268)
T ss_dssp HHHHHHHHHHHHHHHHSC-TTCEEEEEEEEC--SSEEEEEEEESSCCCCHHHHTTTTSTTCCCSS------CCCTTHHHH
T ss_pred HHHHHHHHHHHHHHHhCC-CCCEEEEEEEec--CCEEEEEEEcCCCCCCHHHHHHHHHHHhcCCC------CCCcccHHH
Confidence 366789999999999842 225666666543 45678999999999999999998876655432 346888753
Q ss_pred c---ccccCCeEEEEeee
Q 004945 232 S---TMRLGADVIVFSCC 246 (722)
Q Consensus 232 A---smrLG~~v~V~SR~ 246 (722)
+ .-.+|..+.|.+..
T Consensus 226 ~~~~~~~~gG~i~i~s~~ 243 (268)
T 4ew8_A 226 VKALVELHGGWVALESEP 243 (268)
T ss_dssp HHHHHHHTTCEEEEEECT
T ss_pred HHHHHHHcCCEEEEEecC
Confidence 2 34578888888774
No 45
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=97.37 E-value=0.00017 Score=76.46 Aligned_cols=94 Identities=21% Similarity=0.293 Sum_probs=66.6
Q ss_pred cCHHHHHHHhhhcchhhhhcCC-------ceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccC-----
Q 004945 151 KWALGAFAELLDNSLDEVCNGA-------TYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKA----- 218 (722)
Q Consensus 151 ~~~fsAIAELIDNSiDA~~~gA-------t~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~----- 218 (722)
..+..+|.+||+||+.|...+. ..|.|.+... ++.-.|.|.|+|.||+++++.+.+...++.+...
T Consensus 237 ~~L~~il~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~~--~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~ 314 (388)
T 1gkz_A 237 MPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIANN--DVDLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPR 314 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEEEC--SSEEEEEEECCSCCCCTTTTTTTTSTTCCCC--------
T ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCCCEEEEEEeC--CCEEEEEEEEeCCCcCHHHHHHhcCcccccCCCcccccc
Confidence 4456789999999999975432 1577777543 3567899999999999999999998665544311
Q ss_pred ---------------CcccCccccccccc---ccccCCeEEEEeee
Q 004945 219 ---------------ANTIGQYGNGFKTS---TMRLGADVIVFSCC 246 (722)
Q Consensus 219 ---------------~~~IGrfGvGfKsA---smrLG~~v~V~SR~ 246 (722)
....+-+|+||..+ .-.+|-++.|.|..
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~G~GLGL~i~r~i~~~~gG~i~v~s~~ 360 (388)
T 1gkz_A 315 ISPLFGHLDMHSGGQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQ 360 (388)
T ss_dssp -----------------CCSCSSCHHHHHHHHHHHTTCEEEEEEET
T ss_pred cccchhhcccccccCCCCcCCccCCHHHHHHHHHHhCCEEEEEecC
Confidence 12345688998533 34578899998874
No 46
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=97.35 E-value=0.00015 Score=79.56 Aligned_cols=90 Identities=17% Similarity=0.223 Sum_probs=63.1
Q ss_pred CHHHHHHHhhhcchhhhh--cCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHh--------hhh-ccccccccC--
Q 004945 152 WALGAFAELLDNSLDEVC--NGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRH--------CMS-LGYSAKSKA-- 218 (722)
Q Consensus 152 ~~fsAIAELIDNSiDA~~--~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~--------~l~-~G~SsK~r~-- 218 (722)
-+.-.+.|+||||+|+.. ..++.|.|.|..+ ...|+|.|||.||+.+...+ +|. +....|..+
T Consensus 64 GL~~lv~EivdNaiDe~~~~g~~~~I~V~i~~d----~~sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~LhaGgKfd~~~ 139 (418)
T 1pvg_A 64 GLFKIFDEILVNAADNKVRDPSMKRIDVNIHAE----EHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDDE 139 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETT----TTEEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEESCCCTTS
T ss_pred hHHHHHHHHHhCHHHHHHhcCCCCEEEEEEECC----CCEEEEEECCCcccCcccccCCcccceEEEEEEecccccCCCc
Confidence 345589999999999863 2378877777432 25899999999999776332 343 444455422
Q ss_pred -CcccCcccccccccccccCCeEEEEeee
Q 004945 219 -ANTIGQYGNGFKTSTMRLGADVIVFSCC 246 (722)
Q Consensus 219 -~~~IGrfGvGfKsAsmrLG~~v~V~SR~ 246 (722)
.-.-|..|+|.+.+- .|...+.|.+++
T Consensus 140 ykvSGGLhGVG~SvVN-ALS~~l~V~v~r 167 (418)
T 1pvg_A 140 KKVTGGRNGYGAKLCN-IFSTEFILETAD 167 (418)
T ss_dssp CCCCSCCSSCHHHHHH-HTEEEEEEEEEE
T ss_pred eeccCCccceeeeeee-eccceEEEEEEE
Confidence 235699999986544 488899999885
No 47
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=97.35 E-value=0.00034 Score=63.32 Aligned_cols=86 Identities=22% Similarity=0.294 Sum_probs=55.6
Q ss_pred CHHHHHHHhhhcchhhhhcC--CceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCcccccc
Q 004945 152 WALGAFAELLDNSLDEVCNG--ATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGF 229 (722)
Q Consensus 152 ~~fsAIAELIDNSiDA~~~g--At~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~~IGrfGvGf 229 (722)
.+..+|.|||+||+.+.... ...|.|.+... ++.-.|.|.|||.||+ ++.+.+...++.+. ..+..|+||
T Consensus 39 ~l~~il~~l~~Nai~h~~~~~~~~~I~i~~~~~--~~~~~i~V~D~G~g~~--~~~~~~~~~~~~~~----~~~~~GlGL 110 (145)
T 1th8_A 39 EIKTVVSEAVTNAIIHGYNNDPNGIVSISVIIE--DGVVHLTVRDEGVGIP--DIEEARQPLFTTKP----ELERSGMGF 110 (145)
T ss_dssp HHHHHHHHHHHHHHHTTSTTCTTSEEEEEEEEE--TTEEEEEEEECSSCCS--CHHHHTCCC-----------CCCSCHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEEe--CCEEEEEEEECCCCcC--hHHHhhcccccCCC----CCCCCcchH
Confidence 35678999999999873211 35666766543 3567899999999999 77777765554432 223468888
Q ss_pred cccccccCCeEEEEeee
Q 004945 230 KTSTMRLGADVIVFSCC 246 (722)
Q Consensus 230 KsAsmrLG~~v~V~SR~ 246 (722)
..+. ++...+.+.+..
T Consensus 111 ~iv~-~~~~~i~~~~~~ 126 (145)
T 1th8_A 111 TIME-NFMDEVIVESEV 126 (145)
T ss_dssp HHHH-HHSSEEEEEEET
T ss_pred HHHH-HHHheEEEEeCC
Confidence 7554 355577776654
No 48
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=97.30 E-value=0.00016 Score=68.38 Aligned_cols=86 Identities=19% Similarity=0.210 Sum_probs=40.9
Q ss_pred CHHHHHHHhhhcchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCcccccccc
Q 004945 152 WALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKT 231 (722)
Q Consensus 152 ~~fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~~IGrfGvGfKs 231 (722)
.+..+|.+||+||+.+.. ....|.|.+ .. ..|.|.|||.||+++++.+.+...++.+. ..-+..|+||..
T Consensus 117 ~l~~il~nLl~NAi~~~~-~~~~i~i~~--~~----~~i~V~D~G~Gi~~~~~~~if~~f~~~~~---~~~~g~GlGL~i 186 (222)
T 3jz3_A 117 LLSLLVRNLLDNAVRYSP-QGSVVDVTL--NA----DNFIVRDNGPGVTPEALARIGERFYRPPG---QTATGSGLGLSI 186 (222)
T ss_dssp HHHHHHHHHHHHHHHTCC-TTCEEEEEE--CS----SEEEEECSCC-----------------------------CTHHH
T ss_pred HHHHHHHHHHHHHHHcCC-CCCeEEEEE--cc----CeEEEEECCCCCCHHHHHHHHhhhccCCC---CCCCcccccHHH
Confidence 356789999999999832 233444444 32 12999999999999999998875554321 122456888753
Q ss_pred c---ccccCCeEEEEeeec
Q 004945 232 S---TMRLGADVIVFSCCC 247 (722)
Q Consensus 232 A---smrLG~~v~V~SR~~ 247 (722)
+ .-.+|-++.|.+...
T Consensus 187 ~~~i~~~~gG~i~i~s~~~ 205 (222)
T 3jz3_A 187 VQRIAKLHGMNVEFGNAEQ 205 (222)
T ss_dssp HHHHHHHTTCEEECCBCTT
T ss_pred HHHHHHHcCCEEEEEcCCC
Confidence 3 345788888877654
No 49
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=97.26 E-value=0.00026 Score=62.98 Aligned_cols=73 Identities=11% Similarity=0.027 Sum_probs=53.2
Q ss_pred CHHHHHHHhhhcchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCcccccccc
Q 004945 152 WALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKT 231 (722)
Q Consensus 152 ~~fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~~IGrfGvGfKs 231 (722)
.+..+|.|||+||+.+. .+..|.|.+... ++.-.|.|.|||.||+++++ +..|+||..
T Consensus 40 ~l~~il~nll~Na~k~~--~~~~i~i~~~~~--~~~~~i~V~D~G~Gi~~~~~------------------~g~GlGL~~ 97 (128)
T 3ehg_A 40 ILSMCLKEAVTNVVKHS--QAKTCRVDIQQL--WKEVVITVSDDGTFKGEENS------------------FSKGHGLLG 97 (128)
T ss_dssp HHHHHHHHHHHHHHHHT--CCSEEEEEEEEE--TTEEEEEEEESSCCCSCSSC------------------CCTTSHHHH
T ss_pred HHHHHHHHHHHHHHhcC--CCcEEEEEEEEe--CCEEEEEEEECCcCcCcccC------------------CCCCccHHH
Confidence 34568999999999983 567777777554 35678999999999998765 224777643
Q ss_pred c---ccccCCeEEEEeee
Q 004945 232 S---TMRLGADVIVFSCC 246 (722)
Q Consensus 232 A---smrLG~~v~V~SR~ 246 (722)
+ .-.+|-.+.+.+..
T Consensus 98 ~~~~~~~~gG~i~~~s~~ 115 (128)
T 3ehg_A 98 MRERLEFANGSLHIDTEN 115 (128)
T ss_dssp HHHHHHHTTCEEEEECSS
T ss_pred HHHHHHHcCCEEEEEeCC
Confidence 2 23577888887765
No 50
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=97.20 E-value=0.00054 Score=73.10 Aligned_cols=91 Identities=19% Similarity=0.245 Sum_probs=58.8
Q ss_pred HHHHHHHhhhcchhhhh-----------cCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHH-----------------
Q 004945 153 ALGAFAELLDNSLDEVC-----------NGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKM----------------- 204 (722)
Q Consensus 153 ~fsAIAELIDNSiDA~~-----------~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL----------------- 204 (722)
+..+|.+||.||+++.. .....|.|.+... ++.-.|.|.|||.||+++.+
T Consensus 107 l~~~l~nLl~NAi~h~~e~~~~r~~~gk~~~g~I~i~~~~~--~~~v~i~V~D~G~Gi~~~~~~~~a~~~gl~~~~~~~~ 184 (379)
T 1b3q_A 107 IGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHE--GNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAAT 184 (379)
T ss_dssp HHHHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEEEEE--TTEEEEEEEECSCCCCHHHHHHHHHHSSSCCSTTTTT
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHhcCCCCCcEEEEEEEEe--CCEEEEEEEECCCCCCHHHHHHHHHHcCCCChhhhhc
Confidence 45679999999999831 1234566666443 46678999999999999988
Q ss_pred -------HhhhhccccccccCCcccCcccccccc---cccccCCeEEEEeee
Q 004945 205 -------RHCMSLGYSAKSKAANTIGQYGNGFKT---STMRLGADVIVFSCC 246 (722)
Q Consensus 205 -------~~~l~~G~SsK~r~~~~IGrfGvGfKs---AsmrLG~~v~V~SR~ 246 (722)
...|..|++.+.. ....+-.|+||.. ..-.+|-.+.|.|..
T Consensus 185 ~~~~~~~~~iF~p~fst~~~-~~~~~G~GlGL~iv~~~v~~~gG~i~v~s~~ 235 (379)
T 1b3q_A 185 LSDQEILNFLFVPGFSTKEK-VSEVSGRGVGMDVVKNVVESLNGSMGIESEK 235 (379)
T ss_dssp SCTHHHHSGGGSTTCC------------CCCSHHHHHHHHHTTCEEEEEEET
T ss_pred CCHHHHHHHhcCCCCccCCc-cCCCCCccccHHHHHHHHHHCCCEEEEEEcC
Confidence 4456677776532 2345667899842 344678899998875
No 51
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=97.11 E-value=0.00074 Score=64.78 Aligned_cols=87 Identities=14% Similarity=0.224 Sum_probs=64.0
Q ss_pred CHHHHHHHhhhcchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCcccccccc
Q 004945 152 WALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKT 231 (722)
Q Consensus 152 ~~fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~~IGrfGvGfKs 231 (722)
.+..+|.+||+||+.+.. ....|.|.+... ++.-.|.|.|||.||+++++.+.+...++.+. .+..|+|+..
T Consensus 123 ~l~~il~nLl~NA~~~~~-~~~~i~i~~~~~--~~~~~i~i~D~G~gi~~~~~~~if~~~~~~~~-----~~g~GlGL~i 194 (244)
T 3d36_A 123 KFRQCLLNVMKNAIEAMP-NGGTLQVYVSID--NGRVLIRIADTGVGMTKEQLERLGEPYFTTKG-----VKGTGLGMMV 194 (244)
T ss_dssp HHHHHHHHHHHHHHHTCT-TCEEEEEEEEEE--TTEEEEEEEECSSCCCHHHHHHTTSTTCCSSG-----GGCCSCHHHH
T ss_pred HHHHHHHHHHHHHHHhcc-CCCeEEEEEEEe--CCEEEEEEEecCCCCCHHHHHHHhcccccCCC-----CCCcchhHHH
Confidence 466789999999999842 355666766543 35678999999999999999999876665442 2346888753
Q ss_pred c---ccccCCeEEEEeee
Q 004945 232 S---TMRLGADVIVFSCC 246 (722)
Q Consensus 232 A---smrLG~~v~V~SR~ 246 (722)
+ .-.+|-.+.+.+..
T Consensus 195 ~~~i~~~~gG~i~~~~~~ 212 (244)
T 3d36_A 195 VYRIIESMNGTIRIESEI 212 (244)
T ss_dssp HHHHHHHTTCEEEEEEET
T ss_pred HHHHHHHcCCEEEEEecC
Confidence 3 33578888888774
No 52
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=97.03 E-value=0.00059 Score=69.05 Aligned_cols=86 Identities=10% Similarity=0.056 Sum_probs=59.8
Q ss_pred cCHHHHHHHhhhcchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCccccccc
Q 004945 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (722)
Q Consensus 151 ~~~fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~~IGrfGvGfK 230 (722)
..+..+|.+||+||+.+.. .+..|.|.+... ++.-.|.|.|||.||+++.+.+.+...++.|. +..|+||.
T Consensus 243 ~~l~~vl~nLl~NA~k~~~-~~~~i~i~~~~~--~~~~~i~v~D~G~Gi~~~~~~~if~~f~~~~~------~g~GlGL~ 313 (349)
T 3a0r_A 243 TRIKQVLINLVQNAIEATG-ENGKIKITSEDM--YTKVRVSVWNSGPPIPEELKEKIFSPFFTTKT------QGTGLGLS 313 (349)
T ss_dssp HHHHHHHHHHHTHHHHTTC-TTCCEEEEEEEE--TTEEEEEEEEESCCCCGGGGTTTSSSCCCC------------CCCT
T ss_pred HHHHHHHHHHHHHHHHhcc-CCCEEEEEEEec--CCEEEEEEEECCCCCChHHHhhcCCCCccCCC------CCccchHH
Confidence 3467789999999999842 355677776543 35678999999999999999999886666542 23578875
Q ss_pred cc---cc-ccCCeEEEEee
Q 004945 231 TS---TM-RLGADVIVFSC 245 (722)
Q Consensus 231 sA---sm-rLG~~v~V~SR 245 (722)
.+ .- ..|..+.+.+.
T Consensus 314 i~~~~v~~~~gg~i~~~~~ 332 (349)
T 3a0r_A 314 ICRKIIEDEHGGKIWTENR 332 (349)
T ss_dssp HHHHHHHHTTCSBCCEEEC
T ss_pred HHHHHHHHhCCCEEEEEeC
Confidence 43 22 46777777665
No 53
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=97.01 E-value=0.00088 Score=63.75 Aligned_cols=72 Identities=11% Similarity=0.036 Sum_probs=48.6
Q ss_pred HHHHHHHhhhcchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCccccccccc
Q 004945 153 ALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTS 232 (722)
Q Consensus 153 ~fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~~IGrfGvGfKsA 232 (722)
++.+|.|||+||+.+. .+..|.|.+... ++.-.|.|.|||.||+++.+ +..|+|+..+
T Consensus 131 l~~il~nll~Na~k~~--~~~~i~i~~~~~--~~~~~i~V~D~G~Gi~~~~~------------------~g~GlGL~~~ 188 (218)
T 3ehh_A 131 LSMCLKEAVTNVVKHS--QAKTCRVDIQQL--WKEVVITVSDDGTFKGEENS------------------FSKGHGLLGM 188 (218)
T ss_dssp HHHHHHHHHHHHHHHT--CCSEEEEEEEEE--TTEEEEEEEESSCCCC--------------------------CHHHHH
T ss_pred HHHHHHHHHHHHHHhC--CCCEEEEEEEEe--CCEEEEEEEECCcCCCCCCC------------------CCCCCCHHHH
Confidence 4568999999999983 567777777554 35678999999999999876 2247776432
Q ss_pred ---ccccCCeEEEEeee
Q 004945 233 ---TMRLGADVIVFSCC 246 (722)
Q Consensus 233 ---smrLG~~v~V~SR~ 246 (722)
.-.+|-.+.|.+..
T Consensus 189 ~~~v~~~gG~i~~~s~~ 205 (218)
T 3ehh_A 189 RERLEFANGSLHIDTEN 205 (218)
T ss_dssp HHHHHHTTCEEEEECSS
T ss_pred HHHHHHcCCEEEEeCCC
Confidence 33578888887765
No 54
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=96.91 E-value=0.00096 Score=58.54 Aligned_cols=71 Identities=18% Similarity=0.268 Sum_probs=53.0
Q ss_pred cCHHHHHHHhhhcchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCccccccc
Q 004945 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (722)
Q Consensus 151 ~~~fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~~IGrfGvGfK 230 (722)
..+..+|.+||+||+.+. .+..|.|.+..+. + -.|.|.|||.||+++. .|+|+.
T Consensus 42 ~~l~~il~nll~NA~k~~--~~~~i~i~~~~~~--~-~~i~v~D~G~gi~~~~---------------------~GlGL~ 95 (129)
T 3zxo_A 42 DQAEAVVREAVSNAVRHA--AASTLTVRVKVDD--D-LCIEVTDNGRGMPDEF---------------------TGSGLT 95 (129)
T ss_dssp HHHHHHHHHHHHHCCCCS--SCCEEEEEEEESS--E-EEEEEEECCCCCTTTT---------------------CSHHHH
T ss_pred HHHHHHHHHHHHHHHHhC--CCceEEEEEEEcC--C-EEEEEecCCCCCCccc---------------------CCcCHH
Confidence 456778999999999983 4677777776543 4 7899999999998765 377774
Q ss_pred cc---ccccCCeEEEEeeec
Q 004945 231 TS---TMRLGADVIVFSCCC 247 (722)
Q Consensus 231 sA---smrLG~~v~V~SR~~ 247 (722)
.+ .-.+|-++.+.+...
T Consensus 96 i~~~~~~~~gG~i~~~~~~~ 115 (129)
T 3zxo_A 96 NLRQRAEQAGGEFTLASMPG 115 (129)
T ss_dssp HHHHHHHHTTCEEEEEECTT
T ss_pred HHHHHHHHcCCEEEEeeCCC
Confidence 32 335788888887754
No 55
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=96.38 E-value=0.0034 Score=54.73 Aligned_cols=71 Identities=18% Similarity=0.239 Sum_probs=51.4
Q ss_pred cCHHHHHHHhhhcchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCccccccc
Q 004945 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (722)
Q Consensus 151 ~~~fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~~IGrfGvGfK 230 (722)
..+..+|.|||+||+.+. .+..|.|.+..+. + -.|.|.|||.||+++. -|+|+.
T Consensus 38 ~~l~~il~nll~Na~k~~--~~~~i~i~~~~~~--~-~~i~v~D~G~gi~~~~---------------------~GlGL~ 91 (124)
T 3zxq_A 38 NHAEAVLREAVSNAVRHA--NATSLAINVSVED--D-VRVEVVDDGVGISGDI---------------------TESGLR 91 (124)
T ss_dssp HHHHHHHHHHHHHHHTCT--TCCEEEEEEEEEE--E-EEEEEEECCCSSCGGG---------------------SHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC--CCCEEEEEEEeCC--C-EEEEEEECCCCCCccc---------------------cccCHH
Confidence 455678999999999973 4567777776543 4 7899999999999876 177764
Q ss_pred cc---ccccCCeEEEEeeec
Q 004945 231 TS---TMRLGADVIVFSCCC 247 (722)
Q Consensus 231 sA---smrLG~~v~V~SR~~ 247 (722)
.+ .-.+|-.+.+.+...
T Consensus 92 ~~~~~~~~~gG~i~~~~~~~ 111 (124)
T 3zxq_A 92 NLRQRADDAGGEFTVENMPT 111 (124)
T ss_dssp HHHHHHHHHTCEEEEEECTT
T ss_pred HHHHHHHHhCCEEEEEEcCC
Confidence 32 234677787777643
No 56
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=95.21 E-value=0.016 Score=70.96 Aligned_cols=88 Identities=17% Similarity=0.248 Sum_probs=55.6
Q ss_pred HHHHHHHhhhcchhhhhcC-C-ceeEEEEEEccCCCceeEEEEEcCCCCCHHH--------HHhhhh-ccccccccC---
Q 004945 153 ALGAFAELLDNSLDEVCNG-A-TYSNIDMLINRKDGSRMLLIEDNGGGMNPDK--------MRHCMS-LGYSAKSKA--- 218 (722)
Q Consensus 153 ~fsAIAELIDNSiDA~~~g-A-t~V~IdI~~~~~~g~~~I~I~DNG~GMs~ee--------L~~~l~-~G~SsK~r~--- 218 (722)
+.--+.|+||||+|...++ + +.|.|.|.. ....|+|.|||.||+-+. +.-+|. +....|..+
T Consensus 60 L~hl~~EildNsiDea~ag~~~~~I~V~i~~----~d~sisV~DnGRGIPvd~h~~~~~~~~Evv~t~LhAGgKFd~~~y 135 (1177)
T 4gfh_A 60 LFKIFDEILVNAADNKVRDPSMKRIDVNIHA----EEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDDEK 135 (1177)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCCEEEEEEET----TTTEEEEEECSSCCCCSBCTTTCSBHHHHHHHSSSEESCCCCSSC
T ss_pred eeeEeeEEEEChHhHHhhCCCCCeEEEEEEC----CCCEEEEEecCCcccccccCCCCCEeeeeeccccccccCcCCCCC
Confidence 3445799999999965555 2 566666642 235799999999998642 122343 444444322
Q ss_pred CcccCcccccccccccccCCeEEEEee
Q 004945 219 ANTIGQYGNGFKTSTMRLGADVIVFSC 245 (722)
Q Consensus 219 ~~~IGrfGvGfKsAsmrLG~~v~V~SR 245 (722)
...-|..|+|.+-+- .|...+.|.+.
T Consensus 136 kvSGGLHGVG~svVN-ALS~~~~vev~ 161 (1177)
T 4gfh_A 136 KVTGGRNGYGAKLCN-IFSTEFILETA 161 (1177)
T ss_dssp CCCSCCSSCHHHHHH-HTEEEEEEEEE
T ss_pred eEeccCCChhhhHHh-hcCCceEEEEE
Confidence 235699999976443 36666666553
No 57
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=93.82 E-value=0.08 Score=52.56 Aligned_cols=85 Identities=9% Similarity=0.051 Sum_probs=56.9
Q ss_pred CHHHHHHHhhhcchhhhhcCCceeEEEEEEccCCCceeEEEEEcCCC--CCHHHHHhhhhccccccccCCcccCcccccc
Q 004945 152 WALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGG--MNPDKMRHCMSLGYSAKSKAANTIGQYGNGF 229 (722)
Q Consensus 152 ~~fsAIAELIDNSiDA~~~gAt~V~IdI~~~~~~g~~~I~I~DNG~G--Ms~eeL~~~l~~G~SsK~r~~~~IGrfGvGf 229 (722)
+...++.-||+||++|... ...|.|.+... ++.-.|.|.|+|.| |+++.+...+...++.+ .+-.|+||
T Consensus 146 ~~~qvl~NLl~NA~~a~~~-gg~I~v~~~~~--~~~~~i~V~D~G~Gi~i~~~~~~~~f~~~~~~~------~~G~GLGL 216 (247)
T 4fpp_A 146 PSSRAVLNIAQIAASALPA-GGVATVKGVAA--DGRFSIIADAKGPRARLRPEVLAGLKGEPLAEG------LGGPWVQA 216 (247)
T ss_dssp HHHHHHHHHHHHHHTTCTT-CCEEEEEEEEE--TTEEEEEEEEESTTCCCCHHHHHHHTTCCCCSS------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCC-CCeEEEEEEEE--CCEEEEEEEEcCCCCCCCHHHHHHhcCCCCCCC------CCCccHHH
Confidence 4557899999999998543 34567766543 46778999999987 66666666665333332 12347887
Q ss_pred cc---cccccCCeEEEEee
Q 004945 230 KT---STMRLGADVIVFSC 245 (722)
Q Consensus 230 Ks---AsmrLG~~v~V~SR 245 (722)
.. ..-..|-.+.|-+.
T Consensus 217 ai~~~iv~~hGG~i~v~s~ 235 (247)
T 4fpp_A 217 AYLNALVRAAGGQIAVEIG 235 (247)
T ss_dssp HHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHcCCEEEEEEc
Confidence 43 24457899998765
No 58
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=89.13 E-value=0.25 Score=48.55 Aligned_cols=58 Identities=14% Similarity=0.250 Sum_probs=36.6
Q ss_pred HHHHhhhcchhhhhc-----CCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhcccc
Q 004945 156 AFAELLDNSLDEVCN-----GATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYS 213 (722)
Q Consensus 156 AIAELIDNSiDA~~~-----gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~S 213 (722)
.+..|++|+++|+.+ ....|.|.+..+..++...|.|.|+|.+++.+.+.+.|.-|++
T Consensus 109 ~lgnLi~na~~Ai~~~~~~~~~~~I~i~i~~~~~~~~l~i~V~d~G~~i~~e~~~~if~~~~~ 171 (192)
T 1ixm_A 109 KLAKLMRKLFHLFDQAVSRESENHLTVSLQTDHPDRQLILYLDFHGAFADPSAFDDIRQNGYE 171 (192)
T ss_dssp HHHHHHHHHHHHHHHHBCTTSCCEEEEEEECCCSSSSCEEEEEEESCBSCGGGCC--------
T ss_pred HHHHHHHHHHHHHHhhhccCCCCeEEEEEEEecCCCEEEEEEEeCCCCCCHHHHHHHHhCCCC
Confidence 457788888888743 2456777765531135688999999999999998888865543
No 59
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=88.88 E-value=0.48 Score=50.83 Aligned_cols=76 Identities=13% Similarity=0.156 Sum_probs=44.4
Q ss_pred cCHHHHHHHhhhcchhhhh--cCCceeEEEEEEccCCCceeEEEEEcCCCCCHHHHHhhhhccccccccCCcccCccccc
Q 004945 151 KWALGAFAELLDNSLDEVC--NGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNG 228 (722)
Q Consensus 151 ~~~fsAIAELIDNSiDA~~--~gAt~V~IdI~~~~~~g~~~I~I~DNG~GMs~eeL~~~l~~G~SsK~r~~~~IGrfGvG 228 (722)
..+.-++.|||.||+..-- .....|.|.+.... ++.-.|.|.|+|.|+++. . .-+.-|.|
T Consensus 296 ~~~~l~v~El~~Nav~Ha~~~~~~g~i~v~~~~~~-~~~l~i~V~D~G~g~~~~----------~-------~~~~~G~G 357 (399)
T 3ke6_A 296 ADIVHAISEFVENAVEHGYATDVSKGIVVAAALAG-DGNVRASVIDRGQWKDHR----------D-------GARGRGRG 357 (399)
T ss_dssp HHHHHHHHHHHHHHHHHBCCSCCTTCEEEEEEECT-TSEEEEEEEESCBC-----------------------------C
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEcC-CCEEEEEEEECCCCCCCC----------C-------CCCCCCcH
Confidence 3456689999999999721 01456777775542 346789999999999876 1 01234777
Q ss_pred ccccccccCCeEEEEee
Q 004945 229 FKTSTMRLGADVIVFSC 245 (722)
Q Consensus 229 fKsAsmrLG~~v~V~SR 245 (722)
+..+. .+++.+.+...
T Consensus 358 L~lv~-~l~~~~~~~~~ 373 (399)
T 3ke6_A 358 LAMAE-ALVSEARIMHG 373 (399)
T ss_dssp HHHHH-TTSSEEEEEEE
T ss_pred HHHHH-HHHHheeeEEC
Confidence 76544 47788876544
No 60
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=29.02 E-value=2.6e+02 Score=30.00 Aligned_cols=27 Identities=11% Similarity=0.250 Sum_probs=19.4
Q ss_pred EeecccCcc---cccccCceEEEecCccch
Q 004945 448 TIGFVKDAK---HHIDVQGFNVYHKNRLIK 474 (722)
Q Consensus 448 tiGfl~~~~---~~~~~qGf~VYh~nRLIk 474 (722)
.-||+..+. +.......|+|-|||+|+
T Consensus 264 i~G~is~p~~~~~r~~~~~q~~fVNgR~v~ 293 (367)
T 3h4l_A 264 VKGYISQNSFGCGRNSKDRQFIYVNKRPVE 293 (367)
T ss_dssp EEEEEECCSTTCSBSSSSSEEEEETTEEEC
T ss_pred EEEEEeCCcccccCCCCCcEEEEECCCEec
Confidence 568887543 123457889999999997
Done!