Query 004946
Match_columns 722
No_of_seqs 400 out of 2974
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 15:31:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004946.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004946hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1154 Dxs Deoxyxylulose-5-ph 100.0 3E-157 6E-162 1284.7 63.4 617 79-714 2-625 (627)
2 PLN02225 1-deoxy-D-xylulose-5- 100.0 1E-151 3E-156 1291.8 70.7 696 1-722 1-701 (701)
3 PLN02582 1-deoxy-D-xylulose-5- 100.0 5E-138 1E-142 1190.9 73.2 664 56-722 8-677 (677)
4 PLN02234 1-deoxy-D-xylulose-5- 100.0 6E-134 1E-138 1147.6 64.3 602 40-677 21-633 (641)
5 TIGR00204 dxs 1-deoxy-D-xylulo 100.0 3E-126 7E-131 1098.3 69.9 611 82-711 1-616 (617)
6 PRK12571 1-deoxy-D-xylulose-5- 100.0 2E-124 5E-129 1085.9 69.9 625 76-716 3-632 (641)
7 PRK12315 1-deoxy-D-xylulose-5- 100.0 1E-119 3E-124 1037.3 64.6 574 81-711 2-580 (581)
8 PRK05444 1-deoxy-D-xylulose-5- 100.0 8E-111 2E-115 969.3 62.8 573 76-711 1-580 (580)
9 KOG0523 Transketolase [Carbohy 100.0 1.6E-97 3E-102 808.6 40.0 602 79-718 2-632 (632)
10 PTZ00089 transketolase; Provis 100.0 2E-94 4.3E-99 839.3 57.5 535 98-712 5-659 (661)
11 PLN02790 transketolase 100.0 1.2E-93 2.5E-98 832.0 58.1 531 106-711 1-654 (654)
12 PRK12753 transketolase; Review 100.0 9.1E-93 2E-97 823.7 58.2 537 100-711 5-663 (663)
13 PRK05899 transketolase; Review 100.0 6E-92 1.3E-96 819.1 58.3 541 94-711 3-624 (624)
14 TIGR00232 tktlase_bact transke 100.0 3.3E-88 7.2E-93 786.2 55.4 535 101-711 2-653 (653)
15 PRK12754 transketolase; Review 100.0 3.1E-87 6.8E-92 772.3 56.9 540 99-711 4-663 (663)
16 TIGR03186 AKGDH_not_PDH alpha- 100.0 4.4E-79 9.4E-84 709.7 57.8 552 97-713 73-860 (889)
17 PRK09405 aceE pyruvate dehydro 100.0 1.6E-77 3.4E-82 696.9 59.6 550 99-713 81-863 (891)
18 COG0021 TktA Transketolase [Ca 100.0 3E-78 6.6E-83 665.6 50.6 541 96-712 3-663 (663)
19 PRK13012 2-oxoacid dehydrogena 100.0 1E-75 2.2E-80 684.7 57.8 546 99-713 89-868 (896)
20 PF13292 DXP_synthase_N: 1-deo 100.0 1.1E-77 2.4E-82 606.0 14.9 270 82-366 1-270 (270)
21 COG3958 Transketolase, C-termi 100.0 2.6E-68 5.7E-73 538.5 33.6 304 400-711 6-312 (312)
22 CHL00144 odpB pyruvate dehydro 100.0 1.8E-59 3.9E-64 503.8 36.0 306 400-714 3-326 (327)
23 PRK09212 pyruvate dehydrogenas 100.0 1.9E-58 4.1E-63 496.7 36.4 306 400-713 3-325 (327)
24 PLN02683 pyruvate dehydrogenas 100.0 9E-58 2E-62 495.1 36.5 309 399-714 25-353 (356)
25 TIGR00759 aceE pyruvate dehydr 100.0 6.3E-56 1.4E-60 509.4 53.1 546 99-713 75-857 (885)
26 PRK11892 pyruvate dehydrogenas 100.0 1E-56 2.2E-61 499.8 36.5 306 399-711 140-462 (464)
27 PTZ00182 3-methyl-2-oxobutanat 100.0 7.1E-56 1.5E-60 480.1 34.4 307 399-711 33-355 (355)
28 COG0022 AcoB Pyruvate/2-oxoglu 100.0 3.2E-52 6.9E-57 424.6 29.1 305 401-712 2-323 (324)
29 PRK05261 putative phosphoketol 100.0 2.2E-42 4.8E-47 398.8 53.4 517 118-711 49-741 (785)
30 KOG0524 Pyruvate dehydrogenase 100.0 1.8E-43 3.9E-48 350.8 24.7 306 399-711 33-358 (359)
31 PRK09404 sucA 2-oxoglutarate d 100.0 1.6E-40 3.4E-45 391.7 46.2 526 93-682 185-900 (924)
32 COG2609 AceE Pyruvate dehydrog 100.0 7.1E-40 1.5E-44 359.9 47.4 576 106-713 85-859 (887)
33 cd02007 TPP_DXS Thiamine pyrop 100.0 2.8E-41 6.1E-46 338.2 21.4 195 118-372 1-195 (195)
34 COG3959 Transketolase, N-termi 100.0 1.7E-39 3.6E-44 317.5 23.6 222 94-369 5-243 (243)
35 TIGR00239 2oxo_dh_E1 2-oxoglut 100.0 1E-37 2.2E-42 366.1 38.0 415 191-664 314-890 (929)
36 PF00456 Transketolase_N: Tran 100.0 3.8E-38 8.3E-43 337.5 17.1 233 100-389 2-262 (332)
37 cd02017 TPP_E1_EcPDC_like Thia 100.0 3.3E-37 7.1E-42 330.5 24.3 230 100-386 5-334 (386)
38 KOG0525 Branched chain alpha-k 100.0 1.3E-37 2.8E-42 304.6 16.1 304 399-712 39-361 (362)
39 cd02012 TPP_TK Thiamine pyroph 100.0 1.3E-36 2.8E-41 317.6 24.2 228 105-389 2-246 (255)
40 cd07033 TPP_PYR_DXS_TK_like Py 100.0 3.8E-35 8.2E-40 284.1 19.7 154 406-560 2-156 (156)
41 cd07036 TPP_PYR_E1-PDHc-beta_l 100.0 1.4E-32 3E-37 268.0 17.5 153 405-560 1-167 (167)
42 PF02779 Transket_pyr: Transke 100.0 3.5E-32 7.6E-37 269.2 12.2 163 400-563 2-175 (178)
43 smart00861 Transket_pyr Transk 100.0 7.9E-29 1.7E-33 243.0 17.8 159 402-561 1-167 (168)
44 COG1071 AcoA Pyruvate/2-oxoglu 99.9 6.4E-25 1.4E-29 233.8 19.8 228 92-375 22-269 (358)
45 CHL00149 odpA pyruvate dehydro 99.9 2.6E-23 5.6E-28 225.1 24.3 229 88-375 11-267 (341)
46 PLN02269 Pyruvate dehydrogenas 99.9 5.3E-23 1.2E-27 223.3 23.8 222 93-374 26-266 (362)
47 PLN02374 pyruvate dehydrogenas 99.9 2.1E-22 4.5E-27 222.8 25.7 223 93-375 82-333 (433)
48 cd02000 TPP_E1_PDC_ADC_BCADC T 99.9 1.9E-22 4.1E-27 215.1 23.7 206 112-374 19-235 (293)
49 TIGR03182 PDH_E1_alph_y pyruva 99.9 5.8E-22 1.3E-26 212.9 22.4 203 116-375 29-242 (315)
50 TIGR03181 PDH_E1_alph_x pyruva 99.9 2.8E-21 6E-26 209.7 24.3 223 91-375 18-254 (341)
51 TIGR03336 IOR_alpha indolepyru 99.9 8.3E-21 1.8E-25 220.8 27.6 254 435-710 36-335 (595)
52 PRK07119 2-ketoisovalerate fer 99.9 6.7E-21 1.5E-25 207.3 24.8 272 417-712 20-350 (352)
53 PF02780 Transketolase_C: Tran 99.9 1.6E-23 3.6E-28 195.0 3.6 123 580-703 1-124 (124)
54 PF00676 E1_dh: Dehydrogenase 99.9 5.1E-21 1.1E-25 204.1 21.5 204 116-376 21-234 (300)
55 PRK08659 2-oxoglutarate ferred 99.8 7.3E-20 1.6E-24 200.7 23.2 218 440-662 46-346 (376)
56 KOG0225 Pyruvate dehydrogenase 99.8 3.5E-20 7.7E-25 190.4 15.7 228 88-375 50-295 (394)
57 PRK09622 porA pyruvate flavodo 99.8 2.2E-18 4.8E-23 191.1 29.6 281 417-712 26-382 (407)
58 COG3957 Phosphoketolase [Carbo 99.8 4E-18 8.8E-23 190.1 30.3 467 118-645 60-693 (793)
59 PRK09627 oorA 2-oxoglutarate-a 99.8 4.9E-19 1.1E-23 193.7 22.8 242 416-662 18-347 (375)
60 PRK08366 vorA 2-ketoisovalerat 99.8 1.9E-17 4.1E-22 181.9 28.2 236 416-655 18-327 (390)
61 PRK08367 porA pyruvate ferredo 99.8 9.2E-17 2E-21 176.9 29.6 277 417-712 20-374 (394)
62 TIGR03710 OAFO_sf 2-oxoacid:ac 99.8 1.2E-17 2.5E-22 192.7 21.1 218 443-662 237-537 (562)
63 cd02011 TPP_PK Thiamine pyroph 99.7 9.6E-17 2.1E-21 162.3 15.4 148 168-373 36-209 (227)
64 cd02016 TPP_E1_OGDC_like Thiam 99.7 6E-16 1.3E-20 160.4 15.5 132 191-375 112-254 (265)
65 cd00568 TPP_enzymes Thiamine p 99.6 2.3E-15 5E-20 146.9 14.3 163 133-366 5-168 (168)
66 cd02013 TPP_Xsc_like Thiamine 99.6 1.7E-14 3.7E-19 145.1 18.6 174 129-371 8-183 (196)
67 cd02004 TPP_BZL_OCoD_HPCL Thia 99.6 1.4E-14 3E-19 142.7 17.2 126 190-366 46-171 (172)
68 cd02003 TPP_IolD Thiamine pyro 99.6 2.2E-14 4.8E-19 145.3 18.3 179 133-371 7-188 (205)
69 KOG1182 Branched chain alpha-k 99.6 1.8E-15 3.9E-20 154.3 9.6 222 84-368 73-319 (432)
70 cd02015 TPP_AHAS Thiamine pyro 99.6 1.8E-14 3.8E-19 143.8 16.5 128 190-370 48-177 (186)
71 PRK06163 hypothetical protein; 99.6 5.8E-14 1.2E-18 141.5 18.9 162 125-373 13-179 (202)
72 cd02006 TPP_Gcl Thiamine pyrop 99.6 4.5E-14 9.7E-19 142.8 18.0 183 129-370 12-197 (202)
73 cd02010 TPP_ALS Thiamine pyrop 99.6 2.9E-14 6.4E-19 141.1 15.1 166 131-368 5-171 (177)
74 cd03371 TPP_PpyrDC Thiamine py 99.6 4E-14 8.7E-19 141.3 15.6 122 189-371 45-167 (188)
75 cd02002 TPP_BFDC Thiamine pyro 99.6 1E-13 2.2E-18 137.2 17.1 170 132-366 8-178 (178)
76 COG0028 IlvB Thiamine pyrophos 99.6 6.8E-14 1.5E-18 160.8 17.5 168 130-369 364-533 (550)
77 cd02008 TPP_IOR_alpha Thiamine 99.6 5E-14 1.1E-18 139.6 14.1 127 190-366 49-176 (178)
78 cd02014 TPP_POX Thiamine pyrop 99.5 1E-13 2.2E-18 137.4 16.0 167 130-368 7-174 (178)
79 cd02001 TPP_ComE_PpyrDC Thiami 99.5 1.1E-13 2.3E-18 134.3 14.6 117 190-369 40-157 (157)
80 cd03372 TPP_ComE Thiamine pyro 99.5 1.7E-13 3.7E-18 135.8 15.6 120 190-372 40-160 (179)
81 cd02009 TPP_SHCHC_synthase Thi 99.5 5.2E-14 1.1E-18 139.0 11.5 126 190-366 49-174 (175)
82 TIGR03846 sulfopy_beta sulfopy 99.5 7.3E-13 1.6E-17 131.5 16.1 118 191-370 41-159 (181)
83 cd02005 TPP_PDC_IPDC Thiamine 99.5 5.2E-13 1.1E-17 132.9 14.5 166 130-369 7-176 (183)
84 COG4231 Indolepyruvate ferredo 99.5 4.2E-12 9.2E-17 142.2 22.9 249 443-714 58-356 (640)
85 PRK12270 kgd alpha-ketoglutara 99.5 3.9E-11 8.6E-16 139.1 30.8 426 193-683 620-1204(1228)
86 PF02775 TPP_enzyme_C: Thiamin 99.5 3.3E-13 7E-18 130.3 11.0 129 189-364 25-153 (153)
87 PRK06457 pyruvate dehydrogenas 99.4 1.6E-12 3.5E-17 150.7 17.8 172 125-368 347-520 (549)
88 TIGR02418 acolac_catab acetola 99.4 2.1E-12 4.4E-17 149.6 18.1 174 125-370 359-533 (539)
89 TIGR02176 pyruv_ox_red pyruvat 99.4 1.3E-11 2.7E-16 152.5 25.7 252 444-712 53-380 (1165)
90 TIGR01504 glyox_carbo_lig glyo 99.4 1.4E-12 3E-17 152.3 16.3 186 125-369 369-557 (588)
91 PRK06154 hypothetical protein; 99.4 2.1E-12 4.6E-17 150.1 17.6 175 125-370 381-558 (565)
92 PRK05858 hypothetical protein; 99.4 1.5E-12 3.2E-17 150.8 15.5 174 125-370 358-533 (542)
93 PRK09124 pyruvate dehydrogenas 99.4 3.4E-12 7.4E-17 148.9 18.6 128 190-370 406-533 (574)
94 PRK08322 acetolactate synthase 99.4 5.6E-12 1.2E-16 146.2 20.2 175 125-371 357-532 (547)
95 PRK06965 acetolactate synthase 99.4 3.2E-12 7E-17 149.3 18.1 129 190-370 435-565 (587)
96 COG0674 PorA Pyruvate:ferredox 99.4 3.8E-11 8.3E-16 131.4 25.3 234 418-655 20-325 (365)
97 TIGR03297 Ppyr-DeCO2ase phosph 99.4 8.6E-12 1.9E-16 136.2 19.9 168 125-371 172-340 (361)
98 PRK06546 pyruvate dehydrogenas 99.4 2.2E-12 4.8E-17 150.4 16.2 174 125-370 359-533 (578)
99 PRK08611 pyruvate oxidase; Pro 99.4 3.3E-12 7.3E-17 148.8 17.7 128 190-370 406-533 (576)
100 PRK06112 acetolactate synthase 99.4 3.5E-12 7.7E-17 148.8 17.7 175 125-369 387-562 (578)
101 PRK08978 acetolactate synthase 99.4 5.6E-12 1.2E-16 146.3 19.2 175 124-370 351-528 (548)
102 cd03375 TPP_OGFOR Thiamine pyr 99.4 2.5E-12 5.5E-17 129.0 14.0 134 192-367 51-184 (193)
103 PRK12474 hypothetical protein; 99.4 4.7E-12 1E-16 145.9 17.0 175 125-366 341-518 (518)
104 PRK07979 acetolactate synthase 99.4 4.6E-12 1E-16 147.7 17.0 176 125-369 372-550 (574)
105 PRK08273 thiamine pyrophosphat 99.4 6.9E-12 1.5E-16 146.8 18.5 177 125-370 366-549 (597)
106 PRK07586 hypothetical protein; 99.4 4.3E-12 9.3E-17 146.1 16.5 175 125-366 337-514 (514)
107 PRK06456 acetolactate synthase 99.4 8.7E-12 1.9E-16 145.4 18.9 174 125-369 372-547 (572)
108 PRK09107 acetolactate synthase 99.4 8.2E-12 1.8E-16 146.0 18.5 174 125-369 380-556 (595)
109 PRK07418 acetolactate synthase 99.4 5.2E-12 1.1E-16 148.4 16.7 173 125-370 387-562 (616)
110 TIGR02720 pyruv_oxi_spxB pyruv 99.4 9E-12 2E-16 145.2 18.5 173 125-369 359-534 (575)
111 PRK08979 acetolactate synthase 99.4 7E-12 1.5E-16 146.1 16.7 175 125-369 372-548 (572)
112 cd03376 TPP_PFOR_porB_like Thi 99.4 4.4E-12 9.5E-17 131.0 13.2 139 191-367 61-200 (235)
113 PRK11269 glyoxylate carboligas 99.4 8.1E-12 1.8E-16 146.1 17.0 186 125-369 370-558 (591)
114 TIGR03457 sulphoacet_xsc sulfo 99.4 6.9E-12 1.5E-16 146.4 16.3 177 125-371 381-561 (579)
115 PRK08527 acetolactate synthase 99.4 6.1E-12 1.3E-16 146.3 15.8 175 125-370 365-541 (563)
116 PRK08617 acetolactate synthase 99.4 8.9E-12 1.9E-16 144.7 16.7 128 190-370 412-539 (552)
117 PRK07789 acetolactate synthase 99.4 9.3E-12 2E-16 146.2 17.0 180 125-369 398-578 (612)
118 PRK06725 acetolactate synthase 99.4 1.1E-11 2.5E-16 144.1 17.3 174 125-369 373-547 (570)
119 PRK06882 acetolactate synthase 99.4 1E-11 2.2E-16 144.8 16.9 129 190-370 419-549 (574)
120 PRK07064 hypothetical protein; 99.4 7.6E-12 1.7E-16 145.0 15.5 130 192-373 405-534 (544)
121 PLN02470 acetolactate synthase 99.4 1.1E-11 2.3E-16 144.9 16.8 137 190-370 424-560 (585)
122 PRK08199 thiamine pyrophosphat 99.3 1.3E-11 2.8E-16 143.5 17.0 173 125-369 367-540 (557)
123 PRK09259 putative oxalyl-CoA d 99.3 3.9E-11 8.4E-16 139.9 21.0 175 125-371 373-550 (569)
124 PRK06466 acetolactate synthase 99.3 9.2E-12 2E-16 145.2 15.8 176 125-370 374-551 (574)
125 TIGR03254 oxalate_oxc oxalyl-C 99.3 3.2E-11 6.9E-16 140.1 20.0 173 125-370 366-541 (554)
126 CHL00099 ilvB acetohydroxyacid 99.3 1.4E-11 3.1E-16 143.8 16.8 174 125-369 383-557 (585)
127 PRK06048 acetolactate synthase 99.3 1.4E-11 3E-16 143.3 16.3 172 125-369 366-540 (561)
128 PRK08155 acetolactate synthase 99.3 1.6E-11 3.5E-16 142.9 16.8 175 125-370 370-546 (564)
129 PRK07524 hypothetical protein; 99.3 1E-11 2.2E-16 143.7 14.3 129 190-371 405-533 (535)
130 PRK07710 acetolactate synthase 99.3 2.1E-11 4.6E-16 142.1 17.1 129 190-370 422-551 (571)
131 TIGR00118 acolac_lg acetolacta 99.3 1.3E-11 2.9E-16 143.4 15.0 129 190-370 410-539 (558)
132 cd06586 TPP_enzyme_PYR Pyrimid 99.3 2.3E-11 5E-16 116.9 13.8 127 432-560 24-154 (154)
133 PRK07525 sulfoacetaldehyde ace 99.3 3.3E-11 7.2E-16 140.9 17.8 177 125-371 386-566 (588)
134 PRK11864 2-ketoisovalerate fer 99.3 1.8E-11 3.9E-16 129.4 14.0 146 190-374 67-216 (300)
135 PRK08266 hypothetical protein; 99.3 4.1E-11 8.8E-16 138.9 18.0 129 191-371 401-529 (542)
136 TIGR03393 indolpyr_decarb indo 99.3 1.4E-11 3E-16 142.6 13.7 169 125-368 356-528 (539)
137 PRK06276 acetolactate synthase 99.3 2.5E-11 5.4E-16 141.9 15.1 128 190-369 417-545 (586)
138 PRK07092 benzoylformate decarb 99.3 3.5E-11 7.6E-16 139.0 15.8 170 125-366 359-529 (530)
139 PRK07282 acetolactate synthase 99.3 1.6E-11 3.6E-16 142.8 12.9 173 125-369 369-543 (566)
140 PRK13030 2-oxoacid ferredoxin 99.3 5.2E-10 1.1E-14 136.3 25.2 296 402-713 21-396 (1159)
141 cd02018 TPP_PFOR Thiamine pyro 99.3 4E-11 8.7E-16 124.1 13.3 140 190-367 62-203 (237)
142 PRK11869 2-oxoacid ferredoxin 99.2 6.2E-11 1.3E-15 124.6 13.6 133 192-367 60-193 (280)
143 PLN02573 pyruvate decarboxylas 99.2 2.9E-11 6.2E-16 140.9 11.8 168 125-367 380-552 (578)
144 PRK05778 2-oxoglutarate ferred 99.2 1.2E-10 2.5E-15 124.0 14.8 133 192-367 70-203 (301)
145 PRK07449 2-succinyl-5-enolpyru 99.2 1.8E-10 3.8E-15 134.4 17.6 128 190-368 423-550 (568)
146 PF09364 XFP_N: XFP N-terminal 99.2 5.2E-10 1.1E-14 118.5 17.3 216 118-390 47-307 (379)
147 PRK09628 oorB 2-oxoglutarate-a 99.2 1.7E-10 3.7E-15 121.5 13.4 133 192-367 68-201 (277)
148 PRK11865 pyruvate ferredoxin o 99.2 3E-10 6.4E-15 120.3 14.8 153 189-375 66-221 (299)
149 PRK09193 indolepyruvate ferred 99.2 3.7E-09 8.1E-14 128.6 25.2 289 402-713 29-404 (1165)
150 PRK11866 2-oxoacid ferredoxin 99.2 1.4E-10 3E-15 122.0 10.7 132 192-367 59-192 (279)
151 TIGR03394 indol_phenyl_DC indo 99.1 4.3E-10 9.4E-15 130.0 15.0 123 190-369 401-523 (535)
152 PRK08327 acetolactate synthase 99.1 6.6E-10 1.4E-14 129.5 16.6 137 190-367 428-567 (569)
153 COG3961 Pyruvate decarboxylase 99.1 2.5E-10 5.5E-15 125.3 10.7 204 91-367 319-535 (557)
154 PRK13029 2-oxoacid ferredoxin 99.1 4.1E-09 8.9E-14 127.9 20.5 254 444-711 86-416 (1186)
155 PRK11867 2-oxoglutarate ferred 99.1 6.2E-10 1.3E-14 118.0 11.9 132 192-367 69-202 (286)
156 KOG4166 Thiamine pyrophosphate 99.0 2.2E-09 4.8E-14 114.3 13.3 174 128-371 475-651 (675)
157 TIGR03336 IOR_alpha indolepyru 99.0 1.8E-09 3.9E-14 126.2 13.4 127 191-366 402-529 (595)
158 TIGR02177 PorB_KorB 2-oxoacid: 99.0 1E-09 2.2E-14 115.9 10.2 133 192-367 53-186 (287)
159 KOG0451 Predicted 2-oxoglutara 98.9 9E-08 2E-12 104.8 19.5 450 142-654 211-866 (913)
160 PLN02980 2-oxoglutarate decarb 98.9 9.7E-09 2.1E-13 132.2 13.6 131 191-370 758-892 (1655)
161 PF01855 POR_N: Pyruvate flavo 98.8 1.5E-08 3.2E-13 104.3 10.1 115 445-561 38-155 (230)
162 COG3962 Acetolactate synthase 98.8 9.7E-08 2.1E-12 103.3 15.6 179 122-367 392-575 (617)
163 KOG1185 Thiamine pyrophosphate 98.6 2.4E-06 5.2E-11 93.4 17.8 252 47-370 296-563 (571)
164 COG0567 SucA 2-oxoglutarate de 98.5 1.1E-05 2.3E-10 95.0 21.5 203 444-655 628-857 (906)
165 KOG1184 Thiamine pyrophosphate 98.5 2.2E-07 4.7E-12 102.2 6.2 58 191-254 414-472 (561)
166 KOG0450 2-oxoglutarate dehydro 98.4 4.1E-05 8.9E-10 86.5 23.1 243 412-658 660-965 (1017)
167 COG4231 Indolepyruvate ferredo 98.2 2.1E-06 4.6E-11 97.1 7.8 124 192-365 428-552 (640)
168 PF03894 XFP: D-xylulose 5-pho 98.2 7E-05 1.5E-09 72.6 15.9 143 405-548 2-178 (179)
169 COG1013 PorB Pyruvate:ferredox 98.0 3E-05 6.5E-10 82.6 10.6 132 194-367 72-204 (294)
170 KOG0523 Transketolase [Carbohy 98.0 0.00011 2.4E-09 82.8 15.2 61 323-389 199-259 (632)
171 COG3960 Glyoxylate carboligase 98.0 6.1E-05 1.3E-09 78.9 11.5 137 191-367 418-556 (592)
172 cd07034 TPP_PYR_PFOR_IOR-alpha 97.7 0.0014 3E-08 63.6 16.5 114 442-559 41-159 (160)
173 COG1165 MenD 2-succinyl-6-hydr 97.7 0.00051 1.1E-08 77.3 13.4 213 82-370 336-549 (566)
174 cd03377 TPP_PFOR_PNO Thiamine 97.6 0.00028 6E-09 76.6 9.8 115 214-367 151-267 (365)
175 TIGR03297 Ppyr-DeCO2ase phosph 97.5 0.00086 1.9E-08 73.8 12.0 125 438-564 21-156 (361)
176 cd07035 TPP_PYR_POX_like Pyrim 97.4 0.0014 2.9E-08 63.2 10.9 114 443-559 35-154 (155)
177 PRK09193 indolepyruvate ferred 97.1 0.0015 3.2E-08 80.8 9.4 66 191-263 480-546 (1165)
178 PRK13030 2-oxoacid ferredoxin 97.0 0.0015 3.2E-08 80.9 8.3 65 192-263 468-533 (1159)
179 PF02776 TPP_enzyme_N: Thiamin 96.7 0.026 5.7E-07 55.5 13.0 125 435-562 32-163 (172)
180 PRK13029 2-oxoacid ferredoxin 96.6 0.0067 1.5E-07 75.0 9.3 65 192-263 495-560 (1186)
181 TIGR03845 sulfopyru_alph sulfo 96.5 0.099 2.1E-06 50.8 15.5 108 449-561 40-155 (157)
182 TIGR02176 pyruv_ox_red pyruvat 96.5 0.0069 1.5E-07 76.1 9.0 114 215-367 952-1067(1165)
183 COG4032 Predicted thiamine-pyr 95.6 0.027 5.9E-07 52.6 5.9 110 450-560 49-163 (172)
184 cd07039 TPP_PYR_POX Pyrimidine 95.5 0.58 1.3E-05 45.7 15.7 115 444-561 40-159 (164)
185 cd02004 TPP_BZL_OCoD_HPCL Thia 95.2 0.14 3E-06 50.3 10.1 114 440-558 36-169 (172)
186 cd07037 TPP_PYR_MenD Pyrimidin 94.8 0.23 5E-06 48.5 10.2 113 444-559 37-161 (162)
187 cd02001 TPP_ComE_PpyrDC Thiami 94.8 0.37 8.1E-06 46.7 11.6 143 406-558 3-152 (157)
188 PRK12474 hypothetical protein; 94.3 4.4 9.5E-05 47.0 21.0 116 444-562 45-166 (518)
189 TIGR03457 sulphoacet_xsc sulfo 94.0 1.3 2.8E-05 52.2 16.1 116 444-562 41-161 (579)
190 cd03376 TPP_PFOR_porB_like Thi 93.8 1.2 2.6E-05 46.3 13.6 90 467-558 80-197 (235)
191 PRK11864 2-ketoisovalerate fer 93.7 0.63 1.4E-05 49.9 11.6 103 454-558 73-204 (300)
192 cd07038 TPP_PYR_PDC_IPDC_like 93.7 0.86 1.9E-05 44.4 11.8 113 444-560 37-162 (162)
193 cd02018 TPP_PFOR Thiamine pyro 93.7 2.6 5.6E-05 43.8 15.9 117 441-558 51-200 (237)
194 cd02014 TPP_POX Thiamine pyrop 93.6 0.87 1.9E-05 44.9 11.8 146 407-558 7-170 (178)
195 cd02015 TPP_AHAS Thiamine pyro 93.5 0.6 1.3E-05 46.4 10.5 115 440-558 38-171 (186)
196 PRK05858 hypothetical protein; 93.4 1.7 3.6E-05 50.8 15.7 118 442-562 42-165 (542)
197 PRK06466 acetolactate synthase 93.4 1.3 2.7E-05 52.2 14.7 117 443-562 43-165 (574)
198 PRK07979 acetolactate synthase 93.4 1.7 3.6E-05 51.2 15.7 114 444-562 44-165 (574)
199 COG0028 IlvB Thiamine pyrophos 93.4 2 4.2E-05 50.3 15.9 122 435-562 33-162 (550)
200 PRK08611 pyruvate oxidase; Pro 93.4 1.6 3.5E-05 51.4 15.4 116 444-562 45-165 (576)
201 PRK08266 hypothetical protein; 93.2 1.8 3.9E-05 50.5 15.5 117 443-562 44-169 (542)
202 PRK07586 hypothetical protein; 93.2 2 4.3E-05 49.8 15.7 202 444-648 41-271 (514)
203 PRK07064 hypothetical protein; 93.2 1.9 4.1E-05 50.3 15.6 116 444-562 43-167 (544)
204 cd02010 TPP_ALS Thiamine pyrop 93.2 1.3 2.9E-05 43.7 12.3 116 440-559 36-168 (177)
205 TIGR00118 acolac_lg acetolacta 93.2 1.7 3.8E-05 50.8 15.3 116 444-562 41-162 (558)
206 PRK11866 2-oxoacid ferredoxin 93.1 1.3 2.8E-05 47.1 12.8 147 404-558 19-189 (279)
207 PRK08155 acetolactate synthase 93.0 1.5 3.3E-05 51.4 14.6 117 443-562 52-174 (564)
208 PRK07282 acetolactate synthase 93.0 1.9 4.1E-05 50.7 15.2 114 444-562 50-171 (566)
209 PRK07092 benzoylformate decarb 92.9 2.2 4.7E-05 49.7 15.5 116 444-562 50-172 (530)
210 TIGR02418 acolac_catab acetola 92.9 0.71 1.5E-05 53.8 11.5 116 444-562 38-159 (539)
211 TIGR02177 PorB_KorB 2-oxoacid: 92.9 1.9 4.2E-05 46.0 13.7 143 405-558 14-183 (287)
212 PRK08527 acetolactate synthase 92.8 2.1 4.6E-05 50.2 15.3 116 444-562 43-164 (563)
213 PRK07525 sulfoacetaldehyde ace 92.8 0.83 1.8E-05 53.9 11.9 117 443-562 44-165 (588)
214 PRK09107 acetolactate synthase 92.8 2.4 5.2E-05 50.2 15.7 146 408-562 14-172 (595)
215 PRK06456 acetolactate synthase 92.6 2.4 5.1E-05 49.9 15.4 114 444-562 45-166 (572)
216 TIGR03846 sulfopy_beta sulfopy 92.6 1.7 3.7E-05 43.2 12.1 143 405-559 2-154 (181)
217 PRK08322 acetolactate synthase 92.6 2.5 5.4E-05 49.4 15.4 115 443-562 39-161 (547)
218 cd02009 TPP_SHCHC_synthase Thi 92.6 1.2 2.7E-05 43.8 11.0 114 440-558 39-172 (175)
219 PRK08199 thiamine pyrophosphat 92.5 2.4 5.2E-05 49.7 15.1 115 443-562 47-169 (557)
220 PRK06965 acetolactate synthase 92.4 3 6.4E-05 49.3 15.9 115 443-562 60-182 (587)
221 PRK07524 hypothetical protein; 92.3 2.9 6.4E-05 48.7 15.5 116 444-562 41-165 (535)
222 PRK07710 acetolactate synthase 92.3 2.4 5.1E-05 49.9 14.8 116 442-562 53-176 (571)
223 PRK09628 oorB 2-oxoglutarate-a 92.1 4.1 8.9E-05 43.4 15.0 145 405-558 29-198 (277)
224 PRK07789 acetolactate synthase 92.1 2.9 6.2E-05 49.7 15.3 117 443-562 70-192 (612)
225 PRK06882 acetolactate synthase 92.1 2.9 6.4E-05 49.1 15.3 116 444-562 44-165 (574)
226 PRK06457 pyruvate dehydrogenas 92.1 0.99 2.2E-05 52.8 11.3 117 443-562 40-161 (549)
227 PRK06276 acetolactate synthase 92.0 2.9 6.3E-05 49.3 15.2 116 444-562 40-161 (586)
228 PRK08617 acetolactate synthase 91.7 1.1 2.5E-05 52.3 11.2 115 443-562 43-165 (552)
229 PRK11269 glyoxylate carboligas 91.7 3.4 7.3E-05 48.9 15.2 116 444-562 44-166 (591)
230 PRK06725 acetolactate synthase 91.6 3.8 8.2E-05 48.2 15.5 115 443-562 53-175 (570)
231 PRK06163 hypothetical protein; 91.5 7.1 0.00015 39.6 15.3 145 405-559 16-171 (202)
232 PLN02573 pyruvate decarboxylas 91.5 3.7 8.1E-05 48.4 15.3 115 444-562 56-183 (578)
233 PRK09124 pyruvate dehydrogenas 91.5 4 8.7E-05 48.0 15.5 114 444-562 43-163 (574)
234 PRK08979 acetolactate synthase 91.3 4.5 9.6E-05 47.6 15.6 115 443-562 43-165 (572)
235 TIGR01504 glyox_carbo_lig glyo 91.1 5.6 0.00012 47.0 16.3 116 444-562 43-165 (588)
236 TIGR02720 pyruv_oxi_spxB pyruv 91.1 1.8 3.8E-05 51.0 12.0 117 443-562 39-160 (575)
237 cd02003 TPP_IolD Thiamine pyro 91.0 0.73 1.6E-05 46.7 7.6 116 440-558 36-181 (205)
238 PRK06112 acetolactate synthase 90.9 1.8 4E-05 50.9 11.9 117 443-562 50-172 (578)
239 PLN02470 acetolactate synthase 90.7 4.3 9.4E-05 47.9 14.9 115 443-562 52-174 (585)
240 PRK08273 thiamine pyrophosphat 90.7 4 8.6E-05 48.3 14.5 146 408-562 6-165 (597)
241 PF09363 XFP_C: XFP C-terminal 90.7 3.8 8.3E-05 41.2 12.0 115 589-711 35-162 (203)
242 cd02013 TPP_Xsc_like Thiamine 90.6 0.97 2.1E-05 45.4 8.1 145 407-558 9-176 (196)
243 PRK08978 acetolactate synthase 90.5 1.6 3.4E-05 51.1 10.8 114 444-562 40-161 (548)
244 PRK11865 pyruvate ferredoxin o 90.5 6 0.00013 42.5 14.2 103 454-558 73-208 (299)
245 cd02006 TPP_Gcl Thiamine pyrop 90.4 0.9 1.9E-05 45.9 7.6 147 407-558 13-191 (202)
246 cd03372 TPP_ComE Thiamine pyro 90.4 3.9 8.6E-05 40.5 12.1 141 405-558 2-152 (179)
247 PRK06048 acetolactate synthase 90.3 5.5 0.00012 46.7 15.1 115 443-562 46-168 (561)
248 PRK06546 pyruvate dehydrogenas 90.0 5.6 0.00012 46.9 14.9 116 444-562 43-163 (578)
249 TIGR03254 oxalate_oxc oxalyl-C 89.8 7 0.00015 45.8 15.5 116 444-562 42-165 (554)
250 PRK07418 acetolactate synthase 89.5 2.7 5.9E-05 49.9 11.8 117 443-562 61-183 (616)
251 cd01460 vWA_midasin VWA_Midasi 89.4 5.4 0.00012 42.2 12.7 64 190-253 133-205 (266)
252 PRK07449 2-succinyl-5-enolpyru 88.7 5.8 0.00013 46.6 13.8 151 405-562 9-175 (568)
253 CHL00099 ilvB acetohydroxyacid 88.6 3.2 6.9E-05 49.0 11.6 114 444-562 53-174 (585)
254 TIGR03394 indol_phenyl_DC indo 88.4 8.6 0.00019 44.9 14.9 115 444-562 40-166 (535)
255 TIGR00173 menD 2-succinyl-5-en 88.2 6.5 0.00014 44.5 13.3 115 444-562 40-167 (432)
256 cd02002 TPP_BFDC Thiamine pyro 87.2 2.9 6.2E-05 41.0 8.6 115 440-558 38-176 (178)
257 cd03375 TPP_OGFOR Thiamine pyr 86.9 7.7 0.00017 38.9 11.6 101 455-558 56-181 (193)
258 cd00568 TPP_enzymes Thiamine p 86.8 2.5 5.4E-05 40.7 7.8 100 455-558 51-166 (168)
259 PRK05778 2-oxoglutarate ferred 86.6 8.2 0.00018 41.6 12.2 102 455-558 75-200 (301)
260 PRK08327 acetolactate synthase 86.5 15 0.00032 43.2 15.4 116 444-562 52-182 (569)
261 cd03371 TPP_PpyrDC Thiamine py 86.2 13 0.00029 37.0 12.8 111 442-558 41-160 (188)
262 PRK11869 2-oxoacid ferredoxin 86.1 8.1 0.00018 41.2 11.6 148 403-558 19-190 (280)
263 COG1071 AcoA Pyruvate/2-oxoglu 86.0 4.4 9.6E-05 44.5 9.8 109 447-558 137-258 (358)
264 cd02012 TPP_TK Thiamine pyroph 85.8 6.1 0.00013 41.4 10.6 102 455-559 110-225 (255)
265 cd02007 TPP_DXS Thiamine pyrop 85.7 8.5 0.00018 38.7 11.1 98 455-559 80-188 (195)
266 PRK09259 putative oxalyl-CoA d 85.3 17 0.00037 42.8 15.1 117 443-562 48-172 (569)
267 PRK11867 2-oxoglutarate ferred 84.6 13 0.00028 39.8 12.5 145 403-558 28-199 (286)
268 cd06586 TPP_enzyme_PYR Pyrimid 84.1 6.5 0.00014 37.2 9.1 54 193-254 43-97 (154)
269 cd02008 TPP_IOR_alpha Thiamine 83.9 14 0.00031 36.3 11.7 100 456-558 57-174 (178)
270 PRK06154 hypothetical protein; 83.2 9.4 0.0002 44.9 11.8 147 407-558 386-552 (565)
271 cd02005 TPP_PDC_IPDC Thiamine 81.7 12 0.00025 37.2 10.1 146 407-558 7-171 (183)
272 cd07033 TPP_PYR_DXS_TK_like Py 81.6 11 0.00025 36.2 9.8 51 196-254 50-101 (156)
273 PLN02980 2-oxoglutarate decarb 80.8 16 0.00035 48.5 13.7 113 444-560 341-466 (1655)
274 cd07036 TPP_PYR_E1-PDHc-beta_l 80.8 17 0.00038 35.6 10.8 30 329-363 135-164 (167)
275 cd03027 GRX_DEP Glutaredoxin ( 79.9 5.9 0.00013 32.7 6.2 65 590-656 2-67 (73)
276 PF02775 TPP_enzyme_C: Thiamin 79.8 3.4 7.3E-05 39.5 5.4 114 440-557 16-152 (153)
277 cd03028 GRX_PICOT_like Glutare 77.6 9.2 0.0002 33.2 7.0 67 588-658 7-81 (90)
278 TIGR03393 indolpyr_decarb indo 76.3 25 0.00055 41.0 12.3 144 407-559 361-525 (539)
279 TIGR03181 PDH_E1_alph_x pyruva 75.2 9.9 0.00021 41.7 8.0 101 455-558 131-243 (341)
280 PRK12315 1-deoxy-D-xylulose-5- 74.9 27 0.00058 41.3 12.0 108 446-558 110-240 (581)
281 cd07035 TPP_PYR_POX_like Pyrim 74.1 37 0.00079 32.3 10.9 57 192-254 41-97 (155)
282 TIGR00365 monothiol glutaredox 73.6 14 0.00031 32.6 7.2 70 588-658 11-85 (97)
283 KOG1185 Thiamine pyrophosphate 73.5 20 0.00043 40.7 9.6 118 436-557 414-556 (571)
284 PRK05444 1-deoxy-D-xylulose-5- 72.5 20 0.00044 42.3 10.3 101 455-559 122-240 (580)
285 TIGR00204 dxs 1-deoxy-D-xylulo 72.2 25 0.00053 41.9 10.9 58 189-254 355-414 (617)
286 TIGR03845 sulfopyru_alph sulfo 72.0 57 0.0012 31.6 11.6 54 193-254 42-96 (157)
287 cd02000 TPP_E1_PDC_ADC_BCADC T 71.7 13 0.00029 39.7 7.9 89 468-558 127-225 (293)
288 KOG1145 Mitochondrial translat 69.9 56 0.0012 37.9 12.2 52 201-253 213-264 (683)
289 PLN02790 transketolase 68.5 31 0.00068 41.3 10.8 77 480-559 153-236 (654)
290 cd07037 TPP_PYR_MenD Pyrimidin 67.5 43 0.00092 32.7 9.7 55 191-251 41-95 (162)
291 PF02779 Transket_pyr: Transke 66.5 71 0.0015 31.4 11.2 39 324-365 132-171 (178)
292 PRK12571 1-deoxy-D-xylulose-5- 66.5 41 0.0009 40.2 11.2 58 189-254 364-423 (641)
293 cd03418 GRX_GRXb_1_3_like Glut 66.2 23 0.0005 28.9 6.6 65 591-657 2-68 (75)
294 TIGR02190 GlrX-dom Glutaredoxi 65.5 28 0.0006 29.3 7.0 72 587-662 6-78 (79)
295 PF00676 E1_dh: Dehydrogenase 64.6 16 0.00035 39.3 6.7 102 456-558 107-222 (300)
296 COG3961 Pyruvate decarboxylase 64.0 31 0.00068 39.5 8.8 135 419-562 20-171 (557)
297 CHL00149 odpA pyruvate dehydro 63.7 25 0.00054 38.6 8.0 91 467-558 157-256 (341)
298 PRK05899 transketolase; Review 63.5 60 0.0013 38.8 11.8 70 487-559 172-246 (624)
299 PF04273 DUF442: Putative phos 63.4 13 0.00029 33.8 4.9 43 323-366 51-95 (110)
300 PTZ00089 transketolase; Provis 63.1 49 0.0011 39.8 11.0 77 480-559 164-247 (661)
301 COG1165 MenD 2-succinyl-6-hydr 62.8 41 0.00088 39.0 9.5 151 402-559 9-173 (566)
302 TIGR00173 menD 2-succinyl-5-en 62.4 14 0.00031 41.8 6.1 17 190-206 415-431 (432)
303 PLN02582 1-deoxy-D-xylulose-5- 62.4 40 0.00087 40.5 10.0 58 189-254 401-460 (677)
304 cd00860 ThrRS_anticodon ThrRS 62.1 39 0.00085 28.6 7.5 58 590-649 3-61 (91)
305 PRK12754 transketolase; Review 61.7 51 0.0011 39.6 10.7 72 486-559 167-244 (663)
306 KOG1184 Thiamine pyrophosphate 61.1 27 0.00059 39.9 7.7 148 407-562 6-171 (561)
307 PLN02234 1-deoxy-D-xylulose-5- 61.0 40 0.00087 40.2 9.5 58 189-254 402-461 (641)
308 PLN02683 pyruvate dehydrogenas 60.8 72 0.0016 35.3 11.0 31 329-364 165-195 (356)
309 TIGR02189 GlrX-like_plant Glut 59.8 50 0.0011 29.3 7.9 67 589-657 8-78 (99)
310 PF03129 HGTP_anticodon: Antic 58.6 37 0.0008 29.2 6.8 57 590-648 1-61 (94)
311 PRK10638 glutaredoxin 3; Provi 58.5 42 0.0009 28.4 6.9 65 590-656 3-68 (83)
312 PLN02269 Pyruvate dehydrogenas 57.7 28 0.00061 38.6 7.2 73 484-558 179-256 (362)
313 cd07039 TPP_PYR_POX Pyrimidine 57.3 90 0.0019 30.3 9.9 52 196-253 49-100 (164)
314 cd01481 vWA_collagen_alpha3-VI 57.1 30 0.00065 33.6 6.5 55 591-648 110-164 (165)
315 COG3958 Transketolase, C-termi 55.8 50 0.0011 35.3 8.1 60 189-255 52-113 (312)
316 PRK12753 transketolase; Review 53.6 71 0.0015 38.4 10.2 72 486-559 167-244 (663)
317 cd03029 GRX_hybridPRX5 Glutare 53.1 71 0.0015 25.9 7.3 69 590-662 2-71 (72)
318 cd00858 GlyRS_anticodon GlyRS 51.8 61 0.0013 29.7 7.4 58 589-649 27-87 (121)
319 TIGR02181 GRX_bact Glutaredoxi 50.9 45 0.00098 27.6 5.9 61 597-658 6-67 (79)
320 cd07034 TPP_PYR_PFOR_IOR-alpha 50.9 1.3E+02 0.0027 28.7 9.8 54 192-253 48-101 (160)
321 TIGR03182 PDH_E1_alph_y pyruva 49.8 1.2E+02 0.0026 32.8 10.4 89 468-558 133-231 (315)
322 COG2241 CobL Precorrin-6B meth 49.3 1.5E+02 0.0033 30.2 10.3 95 589-691 95-190 (210)
323 TIGR00232 tktlase_bact transke 49.3 1E+02 0.0022 37.0 10.6 52 196-254 407-458 (653)
324 cd03033 ArsC_15kD Arsenate Red 48.4 42 0.00092 30.6 5.6 48 591-640 2-49 (113)
325 PF03358 FMN_red: NADPH-depend 47.9 42 0.00091 31.6 5.9 65 599-663 16-94 (152)
326 PRK11892 pyruvate dehydrogenas 47.9 1.2E+02 0.0027 34.7 10.5 30 329-363 280-309 (464)
327 PF02776 TPP_enzyme_N: Thiamin 47.9 1.7E+02 0.0036 28.5 10.2 55 192-254 46-102 (172)
328 cd00859 HisRS_anticodon HisRS 47.7 82 0.0018 26.1 7.1 56 590-648 3-60 (91)
329 PLN02374 pyruvate dehydrogenas 47.6 55 0.0012 37.2 7.6 91 467-558 223-322 (433)
330 PLN02225 1-deoxy-D-xylulose-5- 47.6 1.4E+02 0.003 36.1 11.1 58 189-254 426-485 (701)
331 cd01080 NAD_bind_m-THF_DH_Cycl 46.5 48 0.001 32.6 6.0 54 587-648 43-96 (168)
332 cd00861 ProRS_anticodon_short 45.6 77 0.0017 27.0 6.7 58 590-649 3-64 (94)
333 PF00456 Transketolase_N: Tran 42.7 1.1E+02 0.0023 33.7 8.6 91 468-561 145-243 (332)
334 cd00738 HGTP_anticodon HGTP an 42.4 1E+02 0.0022 26.0 7.0 58 590-649 3-64 (94)
335 PRK03767 NAD(P)H:quinone oxido 42.1 1.5E+02 0.0033 29.6 9.1 68 597-665 13-95 (200)
336 PRK15473 cbiF cobalt-precorrin 41.9 1.6E+02 0.0034 30.8 9.6 61 631-694 155-217 (257)
337 PF00289 CPSase_L_chain: Carba 41.3 83 0.0018 28.6 6.4 32 589-623 3-34 (110)
338 KOG0225 Pyruvate dehydrogenase 40.9 1.3E+02 0.0029 32.7 8.6 90 466-559 185-285 (394)
339 PF03960 ArsC: ArsC family; I 40.4 49 0.0011 29.8 4.7 40 599-639 5-44 (110)
340 PRK10329 glutaredoxin-like pro 40.3 86 0.0019 26.6 6.0 61 590-655 2-65 (81)
341 COG1393 ArsC Arsenate reductas 40.3 63 0.0014 29.8 5.4 49 591-641 3-51 (117)
342 TIGR02194 GlrX_NrdH Glutaredox 40.0 81 0.0018 25.7 5.7 57 598-655 7-64 (72)
343 COG0075 Serine-pyruvate aminot 39.7 1.5E+02 0.0033 33.1 9.3 81 584-667 76-162 (383)
344 cd02017 TPP_E1_EcPDC_like Thia 39.6 2.9E+02 0.0063 30.9 11.4 50 481-533 164-218 (386)
345 COG0680 HyaD Ni,Fe-hydrogenase 38.0 80 0.0017 30.8 6.1 55 589-647 2-63 (160)
346 cd06062 H2MP_MemB-H2up Endopep 38.0 1.1E+02 0.0024 29.0 7.0 54 591-648 1-61 (146)
347 PRK11200 grxA glutaredoxin 1; 37.9 1.6E+02 0.0035 24.7 7.4 71 591-664 3-81 (85)
348 cd07038 TPP_PYR_PDC_IPDC_like 37.5 2.6E+02 0.0056 27.0 9.6 55 191-253 41-96 (162)
349 COG3962 Acetolactate synthase 37.0 4.4E+02 0.0095 30.3 12.0 156 400-561 6-189 (617)
350 cd06063 H2MP_Cyano-H2up This g 36.6 1.2E+02 0.0026 28.8 7.0 55 591-649 1-61 (146)
351 cd03035 ArsC_Yffb Arsenate Red 36.5 66 0.0014 28.9 4.9 43 598-641 7-49 (105)
352 TIGR01465 cobM_cbiF precorrin- 35.7 1.7E+02 0.0038 29.6 8.6 62 630-694 145-208 (229)
353 cd05125 Mth938_2P1-like Mth938 35.6 55 0.0012 30.0 4.2 54 586-643 52-106 (114)
354 PRK10853 putative reductase; P 35.2 52 0.0011 30.3 4.1 41 599-640 9-49 (118)
355 PRK10824 glutaredoxin-4; Provi 35.2 1.4E+02 0.003 27.4 6.8 69 588-657 14-87 (115)
356 PF04430 DUF498: Protein of un 34.6 50 0.0011 29.9 3.8 54 587-644 52-106 (110)
357 cd00115 LMWPc Substituted upda 33.0 1.2E+02 0.0025 28.4 6.3 85 605-711 49-140 (141)
358 PRK10264 hydrogenase 1 maturat 33.0 1.9E+02 0.004 29.2 8.0 56 589-648 4-66 (195)
359 PRK10026 arsenate reductase; P 32.1 1E+02 0.0022 29.4 5.6 43 598-641 10-52 (141)
360 COG0695 GrxC Glutaredoxin and 30.9 1.5E+02 0.0033 25.0 6.0 62 591-653 3-66 (80)
361 cd06068 H2MP_like-1 Putative [ 30.8 1.6E+02 0.0036 27.8 6.9 54 593-649 2-61 (144)
362 PF03853 YjeF_N: YjeF-related 30.5 1.1E+02 0.0024 29.8 5.8 41 591-631 29-69 (169)
363 PRK07119 2-ketoisovalerate fer 30.5 77 0.0017 35.0 5.2 48 197-252 60-107 (352)
364 PF01565 FAD_binding_4: FAD bi 30.2 2.7E+02 0.0059 25.6 8.2 77 529-607 3-81 (139)
365 cd00248 Mth938-like Mth938-lik 30.0 72 0.0016 28.9 4.1 35 589-623 53-88 (109)
366 PRK08659 2-oxoglutarate ferred 29.9 4.9E+02 0.011 29.0 11.4 51 196-254 59-109 (376)
367 PRK10466 hybD hydrogenase 2 ma 29.8 2.1E+02 0.0045 27.8 7.5 56 590-649 2-64 (164)
368 CHL00144 odpB pyruvate dehydro 29.7 3.3E+02 0.0072 29.7 9.9 30 329-363 142-171 (327)
369 PF10740 DUF2529: Protein of u 29.6 1.7E+02 0.0036 29.0 6.6 84 536-621 24-115 (172)
370 PF00258 Flavodoxin_1: Flavodo 29.4 1.2E+02 0.0025 28.2 5.6 31 597-627 8-38 (143)
371 TIGR00014 arsC arsenate reduct 29.3 1E+02 0.0022 28.0 5.0 43 598-641 7-49 (114)
372 PTZ00062 glutaredoxin; Provisi 28.9 2.2E+02 0.0048 28.9 7.8 73 588-667 112-193 (204)
373 cd03034 ArsC_ArsC Arsenate Red 28.8 1.1E+02 0.0023 27.7 5.0 42 598-640 7-48 (112)
374 cd02066 GRX_family Glutaredoxi 28.5 2.5E+02 0.0053 21.8 6.7 63 591-655 2-65 (72)
375 PF00670 AdoHcyase_NAD: S-aden 28.4 85 0.0018 30.7 4.4 58 586-646 21-85 (162)
376 TIGR01616 nitro_assoc nitrogen 28.3 1.1E+02 0.0024 28.5 5.1 41 598-639 9-49 (126)
377 PRK11544 hycI hydrogenase 3 ma 27.6 2.6E+02 0.0056 26.9 7.7 56 590-648 2-63 (156)
378 TIGR00130 frhD coenzyme F420-r 27.5 2E+02 0.0042 27.6 6.8 58 589-649 3-70 (153)
379 COG5016 Pyruvate/oxaloacetate 27.2 50 0.0011 36.8 2.8 76 10-107 198-273 (472)
380 TIGR02691 arsC_pI258_fam arsen 26.8 1.5E+02 0.0032 27.6 5.7 87 604-708 41-127 (129)
381 cd05126 Mth938 Mth938 domain. 26.5 64 0.0014 29.7 3.1 56 585-644 55-112 (117)
382 COG0426 FpaA Uncharacterized f 26.5 1.1E+02 0.0025 34.1 5.5 48 595-645 256-303 (388)
383 cd00518 H2MP Hydrogenase speci 26.4 2.2E+02 0.0047 26.7 6.8 53 593-649 2-60 (139)
384 COG0655 WrbA Multimeric flavod 26.2 2.5E+02 0.0055 28.2 7.7 69 596-664 13-100 (207)
385 COG0543 UbiB 2-polyprenylpheno 25.9 2.6E+02 0.0056 29.1 8.0 73 578-651 96-173 (252)
386 cd03032 ArsC_Spx Arsenate Redu 25.7 1.6E+02 0.0036 26.6 5.7 41 598-639 8-48 (115)
387 PHA03050 glutaredoxin; Provisi 25.5 2.9E+02 0.0064 24.8 7.2 68 588-657 12-86 (108)
388 cd05560 Xcc1710_like Xcc1710_l 25.5 1.1E+02 0.0024 27.7 4.4 53 588-644 52-105 (109)
389 PF11823 DUF3343: Protein of u 25.4 1.2E+02 0.0027 25.0 4.4 54 599-666 10-63 (73)
390 cd02977 ArsC_family Arsenate R 25.0 1.4E+02 0.0031 26.3 5.1 42 598-640 7-48 (105)
391 PRK13344 spxA transcriptional 24.9 1.6E+02 0.0035 27.6 5.5 43 597-640 7-49 (132)
392 COG4565 CitB Response regulato 24.8 1.8E+02 0.004 29.8 6.1 98 520-639 18-116 (224)
393 PRK13403 ketol-acid reductoiso 24.7 2E+02 0.0044 31.5 6.9 56 587-646 15-78 (335)
394 PF13528 Glyco_trans_1_3: Glyc 24.6 5.7E+02 0.012 26.9 10.6 94 589-697 192-295 (318)
395 cd03031 GRX_GRX_like Glutaredo 24.6 3E+02 0.0066 26.4 7.4 67 599-668 15-86 (147)
396 PF00462 Glutaredoxin: Glutare 23.9 3.1E+02 0.0067 21.2 6.3 28 598-625 7-34 (60)
397 PRK09212 pyruvate dehydrogenas 23.8 4.6E+02 0.0099 28.6 9.6 31 329-364 142-172 (327)
398 TIGR02853 spore_dpaA dipicolin 23.7 2E+02 0.0043 30.8 6.6 56 587-645 150-215 (287)
399 TIGR00072 hydrog_prot hydrogen 23.4 2.7E+02 0.0059 26.2 6.9 53 593-649 2-61 (145)
400 cd03798 GT1_wlbH_like This fam 23.1 5.5E+02 0.012 26.5 10.1 73 627-714 266-345 (377)
401 cd05212 NAD_bind_m-THF_DH_Cycl 23.0 1.7E+02 0.0036 27.9 5.3 55 587-649 27-81 (140)
402 PF00590 TP_methylase: Tetrapy 23.0 1.6E+02 0.0035 29.2 5.6 62 628-692 146-209 (210)
403 cd02016 TPP_E1_OGDC_like Thiam 22.9 2.9E+02 0.0063 29.3 7.5 83 475-558 150-243 (265)
404 cd04795 SIS SIS domain. SIS (S 22.7 3.7E+02 0.0081 22.0 7.1 71 591-666 1-74 (87)
405 TIGR00012 L29 ribosomal protei 22.7 94 0.002 24.5 3.0 26 90-115 1-26 (55)
406 KOG2862 Alanine-glyoxylate ami 22.6 3E+02 0.0065 30.0 7.4 186 510-713 24-228 (385)
407 TIGR00142 hycI hydrogenase mat 22.5 2.7E+02 0.0058 26.4 6.7 55 591-648 1-62 (146)
408 PRK08306 dipicolinate synthase 22.2 2.2E+02 0.0047 30.6 6.6 56 587-645 151-216 (296)
409 cd03036 ArsC_like Arsenate Red 21.3 1.7E+02 0.0038 26.3 4.9 42 598-640 7-48 (111)
410 PF06698 DUF1192: Protein of u 21.2 1.2E+02 0.0025 24.6 3.2 31 85-115 12-42 (59)
411 PF02254 TrkA_N: TrkA-N domain 21.2 2.9E+02 0.0062 24.4 6.4 30 591-623 1-30 (116)
412 PF14097 SpoVAE: Stage V sporu 20.9 5.7E+02 0.012 25.3 8.4 73 590-665 1-80 (180)
413 PRK12559 transcriptional regul 20.9 2.2E+02 0.0048 26.6 5.6 41 598-639 8-48 (131)
414 TIGR01617 arsC_related transcr 20.7 1.8E+02 0.0038 26.4 4.9 45 596-641 5-49 (117)
415 PRK00306 50S ribosomal protein 20.7 1.1E+02 0.0023 25.2 3.0 28 88-115 3-30 (66)
416 PF04609 MCR_C: Methyl-coenzym 20.6 1E+03 0.022 25.2 11.8 88 588-683 70-168 (268)
417 CHL00201 syh histidine-tRNA sy 20.6 2.8E+02 0.0061 31.4 7.5 56 590-648 327-384 (430)
418 smart00226 LMWPc Low molecular 20.4 2E+02 0.0044 26.6 5.4 37 605-649 45-81 (140)
419 cd06070 H2MP_like-2 Putative [ 20.1 2.8E+02 0.0061 26.1 6.2 51 593-649 2-56 (140)
No 1
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=100.00 E-value=2.7e-157 Score=1284.67 Aligned_cols=617 Identities=47% Similarity=0.754 Sum_probs=591.4
Q ss_pred CccccCCCCchhccCCCHHHHHHHHHHHHHHHHHhHhcCCCCCCCcchHHHHHHHHhhccCCCCcEEEecCCchHHHHHH
Q 004946 79 TPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKI 158 (722)
Q Consensus 79 ~~~l~~i~~p~~~~~l~~~~l~~la~eiR~~ii~~~~~~gGh~~~slg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ 158 (722)
+|+|++|++|+|||+|+.+||++||+|||++|++.++++|||++|+||+||||+|||||||+|.|+||||||||+|+|||
T Consensus 2 ~~~L~~i~~P~dLk~ls~~eL~~La~EiR~~li~~vS~~GGHlgsnLGvVELTiALH~VF~sP~D~~IwDVgHQaYpHKi 81 (627)
T COG1154 2 YPLLDKINSPADLKKLSIEELPQLADEIREFLLEVVSATGGHLGSNLGVVELTIALHYVFDSPKDKLIWDVGHQAYPHKI 81 (627)
T ss_pred cchhhhcCCHHHHhhCCHHHHHHHHHHHHHHHHHHhccCCCccCCCcChhhhhHHHHHHhCCCCCCeEEecCcccchhHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHh
Q 004946 159 LTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNA 238 (722)
Q Consensus 159 ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A 238 (722)
||||+++|.++||++|++|||+|.||+||.|++||+||+||+|+|||+|++++|++++||||||||+++.||+|||||+|
T Consensus 82 LTGR~e~f~tlRq~~GlsGf~~r~ESe~D~f~~GHsSTSiSaalG~A~A~~~~g~~~~vvaVIGDGAlt~GmA~EALN~a 161 (627)
T COG1154 82 LTGRREQFDTLRQKDGLSGFPKREESEHDWFGVGHSSTSISAALGMAKARDLKGEDRNVVAVIGDGALTGGMAFEALNNA 161 (627)
T ss_pred hcCchhhcchhhhcCCCCCCCCcccCCCcccccCchHHHHHHHhhHHHHHHhcCCCCcEEEEECCccccchHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred h-hcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhccc
Q 004946 239 G-YLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMI 317 (722)
Q Consensus 239 ~-~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~ 317 (722)
+ ..+.|||||+|||+|| |++|+|+++++|+++++++.|+++|+..|.+++..|.++....+++++.+|+++
T Consensus 162 g~~~~~~~iVILNDNeMS--------Is~nvGal~~~L~~l~~~~~y~~~~~~~kk~l~~~~~~~~~~~~r~e~~~K~l~ 233 (627)
T COG1154 162 GADLKSNLIVILNDNEMS--------ISPNVGALSKHLARLRSGPFYQSLREGGKKVLSKVGPPLKRFAKRAEESIKGLL 233 (627)
T ss_pred hhccCCCEEEEEeCCCcc--------cCCCccHHHHHHHHHhccchHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhccc
Confidence 9 5569999999999994 899999999999999999999999999999999888899999999999999988
Q ss_pred CCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEEEEEeeccCCCcccccccchhhccCCCC---CCCCC
Q 004946 318 GPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGAS---DSNSL 394 (722)
Q Consensus 318 ~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kG~G~~~ae~~~~~~~~H~~~~---~~tg~ 394 (722)
.+ ..+||+|||+|+||+||||+++|+.+|+.+|+. ++|++|||+|.|||||++||. ++.+||++.+ .++|.
T Consensus 234 ~~--~~lFeelGf~YiGPiDGHni~~Li~~Lk~~kd~--~gPvllHv~T~KGKGY~pAE~--d~~~~H~v~~f~~~~tg~ 307 (627)
T COG1154 234 VP--GTLFEELGFNYIGPIDGHNLEELIPTLKNAKDL--KGPVLLHVVTKKGKGYKPAEE--DPIKYHGVGPFDPIETGQ 307 (627)
T ss_pred Cc--hhhHHHhCCeeECCcCCCCHHHHHHHHHHHhcC--CCCEEEEEEecCCCCCChhhc--ChhhccCCCCCCccccCc
Confidence 87 489999999999999999999999999999994 899999999999999999998 8999999998 47887
Q ss_pred CCC--CCccchHHHHHHHHHHHHhcCCCEEEEecCCCCccchHHHHHhCCCceeecccchHHHHHHHHHHhcCCCeeEEE
Q 004946 395 PFG--NYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCI 472 (722)
Q Consensus 395 ~~~--~~~~s~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f~~~~p~R~~d~GIaE~~av~~AaGlA~~G~~p~~~ 472 (722)
+.+ +...+|+++|+++|++++++|++||+|||+|..++||..|+++||+||||+||||||||++|+|||++|+||||+
T Consensus 308 ~~~~~~~~~sys~vf~~~L~~~a~~d~~ivaITaAM~~gtGL~~F~~~fP~R~fDVGIAEQHAVT~AAGlA~~G~kPvva 387 (627)
T COG1154 308 SKKSKPSAPSYTKVFGDTLCELAAKDEKIVAITAAMPEGTGLVKFSKKFPDRFFDVGIAEQHAVTFAAGLAAEGMKPVVA 387 (627)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEecCCCCCCChHHHHHhCchhheehhhhHHHHHHHHHHHHhCCCCCEEE
Confidence 655 566789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCccCCCCCCcCcHHHHHHhcCCCCcEEEeeCCHHHHHHHHHHHhhhCCC
Q 004946 473 IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDR 552 (722)
Q Consensus 473 t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~~~~ 552 (722)
+||+||||||||++||+|+|++||+|+++|+|++|+||+|||+.+|++|+++||||+|++|+|++|+..|+.+|+..+++
T Consensus 388 IYSTFLQRAYDQliHDvaiqnLPV~faIDRAGivG~DG~TH~G~fDls~l~~iPnmvi~aP~de~el~~ml~ta~~~~~g 467 (627)
T COG1154 388 IYSTFLQRAYDQLIHDVAIQNLPVTFAIDRAGIVGADGPTHQGLFDLSFLRCIPNMVIMAPRDEEELRQMLYTALAQDDG 467 (627)
T ss_pred EecHHHHHHHHHHHHHHHhccCCeEEEEecCcccCCCCCccccHHHHHHHhcCCCcEEecCCCHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred CEEEEecCCCcccccCCCCCCCCccccccEEEEEeCCcEEEEEechhhHHHHHHHHHHHhcCCcEEEeecCccccchHHH
Q 004946 553 PVCFRYPRGAIVRTDLPGYRGIPIEEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKL 632 (722)
Q Consensus 553 Pv~ir~~r~~~~~~~~p~~~~~~~~~igk~~vl~eG~dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~ 632 (722)
|+.|||||++......... ..++ ++|||+++++|.||+|+++|+++..|++|++.|.+.||+++|||+||+||+|+++
T Consensus 468 P~AiRyPrg~~~~~~~~~~-~~~~-~~Gk~~i~~~G~~vail~~G~~~~~al~vae~L~~~Gi~~TVvd~rfvkPlD~~l 545 (627)
T COG1154 468 PVAIRYPRGNGVGVILTPE-LEPL-EIGKGELLKEGEKVAILAFGTMLPEALKVAEKLNAYGISVTVVDPRFVKPLDEAL 545 (627)
T ss_pred CeEEEecCCCCCCCCcccc-cccc-cccceEEEecCCcEEEEecchhhHHHHHHHHHHHhcCCCcEEEcCeecCCCCHHH
Confidence 9999999998654422211 3456 8999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCeEEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHh
Q 004946 633 VRELCQNHTFLITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLL 711 (722)
Q Consensus 633 i~~~~~~~~~vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~v~~ig~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~ll 711 (722)
++++++.++.+||+||+. .||||+.|++++..+++ ..+++++|+||.|++||+++++++.+|||+++|+++|.+.+
T Consensus 546 l~~La~~h~~~vtlEe~~~~GG~Gs~v~efl~~~~~---~~~v~~lglpd~fi~hg~~~el~~~~gLd~~~i~~~i~~~l 622 (627)
T COG1154 546 LLELAKSHDLVVTLEENVVDGGFGSAVLEFLAAHGI---LVPVLNLGLPDEFIDHGSPEELLAELGLDAEGIARRILEWL 622 (627)
T ss_pred HHHHHhhcCeEEEEecCcccccHHHHHHHHHHhcCC---CCceEEecCChHhhccCCHHHHHHHcCCCHHHHHHHHHHHH
Confidence 999999999999999998 79999999999999986 47899999999999999999999999999999999999988
Q ss_pred hcc
Q 004946 712 GRT 714 (722)
Q Consensus 712 ~~~ 714 (722)
...
T Consensus 623 ~~~ 625 (627)
T COG1154 623 KAR 625 (627)
T ss_pred hhc
Confidence 654
No 2
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=1.3e-151 Score=1291.79 Aligned_cols=696 Identities=71% Similarity=1.097 Sum_probs=622.8
Q ss_pred CCCCCCCCcccccccccccccccchhhhhhccccccccccc-ccccCCCCCCcccCcc--eeeeccccCCCCCCccCCCC
Q 004946 1 MVTPSAKYPLELPLTAHCHGTLDQRKIEFLSSNISRELEIS-RINLCPSSSSITSSKL--VTVSRICALPDIDDFFWDKE 77 (722)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 77 (722)
|-|.++.||.- +++|.-|... -|.|.++|+....+..+ |.+.+.+++ .++... ..|++. .++.++|+++++
T Consensus 1 ~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~ 74 (701)
T PLN02225 1 MGSASIGYQFG--ISARFYGNFN-LSSDITVSSLPCKLDVSIKSLFSAPSS-THKECSNRARVCCS--LPNTDEYCDEKF 74 (701)
T ss_pred CCccccccccc--ceeeeeeecC-cchhhhhhhcccccccchhhccccccc-cccccccccccccC--CCccccccCCCC
Confidence 56778899875 5889888775 46788999888877665 444444333 333221 123322 445669999998
Q ss_pred CCccccCCCCchhccCCCHHHHHHHHHHHHHHHHHhH-hcCCCCCCCcchHHHHHHHHhhccCCCCcEEEecCCchHHHH
Q 004946 78 PTPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIV-SKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAH 156 (722)
Q Consensus 78 ~~~~l~~i~~p~~~~~l~~~~l~~la~eiR~~ii~~~-~~~gGh~~~slg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h 156 (722)
++|+||+||+|.|||+|+.+||++||+|||++|++.+ +++|||++||||+||||+|||||||.|+|+||||||||+|+|
T Consensus 75 ~~~~L~~i~~P~dlk~L~~~eL~~La~EiR~~li~~v~s~~GGHl~snLGvVELTvALH~VFd~p~DkiiwDvgHQ~Y~H 154 (701)
T PLN02225 75 ETPILDSIETPLQLKNLSVKELKLLADEIRTELHSVLWKKTQKSMNPSFAAIELTLALHYVFRAPVDNILWDAVEQTYAH 154 (701)
T ss_pred CCchhhhcCCHHHHhhCCHHHHHHHHHHHHHHHHHHhhcccCCCcCCCccHHHHHHHHHHHhCCCCCceeeccccccchh
Confidence 8999999999999999999999999999999999999 799999999999999999999999999999999999999999
Q ss_pred HHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHH
Q 004946 157 KILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMS 236 (722)
Q Consensus 157 ~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln 236 (722)
||||||++.|.+ ||++|++|||+|.||+||.|++||+||+||+|+|||.|+++++++++||+|||||+|++||+|||||
T Consensus 155 KiLTGR~~~f~~-Rq~~GlsGf~~r~ES~~D~f~~GHssTSiSaalG~a~ardl~g~~~~vvaVIGDGaltgGma~EaLN 233 (701)
T PLN02225 155 KVLTRRWSAIPS-RQKNGISGVTSQLESEYDSFGTGHGCNSISAGLGLAVARDIKGKRDRVVAVIDNATITAGQAYEAMS 233 (701)
T ss_pred hHhcCChhhcCc-cccCCcCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCCcEEEEEcCcchhhhhHHHHHh
Confidence 999999999997 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcc
Q 004946 237 NAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM 316 (722)
Q Consensus 237 ~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~ 316 (722)
+|+..+.|||||+|||+|+..|....+...++|+++++|+++++++.|+++|+..+.+++.++..+....++++++++++
T Consensus 234 ~~g~~~~~livILNDN~mSi~~n~~~~~~~~vG~ls~~l~~l~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 313 (701)
T PLN02225 234 NAGYLDSNMIVILNDSRHSLHPNMEEGSKASISALSSIMSKIQSSKIFRKFRELAKAMTKRIGKGMYEWAAKVDEYARGM 313 (701)
T ss_pred hhhccCCCEEEEEeCCCCCCCCCCCCccCCccchHHHHHHHHhccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhc
Confidence 99999999999999999952222112222239999999999999999999999999999999877888889999999999
Q ss_pred cCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEEEEEeeccCCCcccccccchhhccCCCCCCCCCCC
Q 004946 317 IGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGASDSNSLPF 396 (722)
Q Consensus 317 ~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kG~G~~~ae~~~~~~~~H~~~~~~tg~~~ 396 (722)
+.+.+..+||+|||+|+||+||||+++|+++|+++|+.+.++|++|||+|+|||.. +||+..
T Consensus 314 ~~~~~~~lFe~lG~~Y~GpvDGHdi~~Li~~l~~~k~~~~~~PvlvHv~T~KGkd~------------------~tg~~~ 375 (701)
T PLN02225 314 VGPTGSTLFEELGLYYIGPVDGHNIEDLVCVLREVSSLDSMGPVLVHVITEENRDA------------------ETGKNI 375 (701)
T ss_pred cCCCccCcHHHcCCeEECccCCCCHHHHHHHHHHHHcCCCCCCEEEEEEecCCCCC------------------CCCCcC
Confidence 87643479999999999999999999999999999986335999999999999821 244322
Q ss_pred C-CCccchHHHHHHHHHHHHhcCCCEEEEecCCCCccchHHHHHhCCCceeecccchHHHHHHHHHHhcCCCeeEEEecH
Q 004946 397 G-NYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPS 475 (722)
Q Consensus 397 ~-~~~~s~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f~~~~p~R~~d~GIaE~~av~~AaGlA~~G~~p~~~t~~ 475 (722)
+ ....+|+++|+++|.+++++|++|+++++||+.++++..|+++||+||||+||||||||++|+|||++|+||||++|+
T Consensus 376 ~~~~~~s~~~~f~~aL~~la~~D~~Iv~Itadm~~gtgl~~f~~~fPdRffDvGIAEQhaVt~AAGLA~~G~kPvv~iys 455 (701)
T PLN02225 376 MVKDRRTYSDCFVEALVMEAEKDRDIVVVHAGMEMDASLITFQERFPDRFFNVGMAEQHAVTFSAGLSSGGLKPFCIIPS 455 (701)
T ss_pred CCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCccCcccHHHHHHHccccccccCccHHHHHHHHHHHHHCCCEEEEEeeh
Confidence 2 235699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhcCCCCEEEEEeCCCccCCCCCCcCcHHHHHHhcCCCCcEEEeeCCHHHHHHHHHHHhhhCCCCEE
Q 004946 476 AFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVC 555 (722)
Q Consensus 476 ~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~~~~Pv~ 555 (722)
+|+|||||||+|++|++++||+|+++++|++|+||+|||+.+|+++||++|||+|++|+|+.|++.|+++|+...++|++
T Consensus 456 tFlqRAyDQI~~Dval~~lpV~~vid~aGlvg~DG~TH~g~~Dia~lr~IPnm~V~aPsD~~El~~mL~~A~~~~~gPv~ 535 (701)
T PLN02225 456 AFLQRAYDQVVHDVDRQRKAVRFVITSAGLVGSDGPVQCGAFDIAFMSSLPNMIAMAPADEDELVNMVATAAYVTDRPVC 535 (701)
T ss_pred hHHHHHHHHHHHHHHhhcCCceEEEECCccCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhcCCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999865679999
Q ss_pred EEecCCCcccccCCCCCCCCccccccEEEEEeCCcEEEEEechhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHH
Q 004946 556 FRYPRGAIVRTDLPGYRGIPIEEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRE 635 (722)
Q Consensus 556 ir~~r~~~~~~~~p~~~~~~~~~igk~~vl~eG~dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~ 635 (722)
||+||+..+..+.+...++++ ++||++++++|+|++||++|+|++.|++|++.|+++||+++|||++|+||||+++|.+
T Consensus 536 IR~pRg~~~~~~~~~~~~~~~-~iGK~~vlreG~dvtIia~G~mv~~Al~AA~~L~~~GI~vtVIdlr~ikPLD~e~I~~ 614 (701)
T PLN02225 536 FRFPRGSIVNMNYLVPTGLPI-EIGRGRVLVEGQDVALLGYGAMVQNCLHAHSLLSKLGLNVTVADARFCKPLDIKLVRD 614 (701)
T ss_pred EEecccccCCCCcCCCCCccc-cCcceEEEEeCCCEEEEeccHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCHHHHHH
Confidence 999998644321101123567 8999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHhhcch
Q 004946 636 LCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGRTR 715 (722)
Q Consensus 636 ~~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~v~~ig~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~ll~~~~ 715 (722)
++++++.||||||+..||||++|++++.++++.+.+.+++++|+||+|++||+++++++++|||+++|+++|+++++..+
T Consensus 615 ~~~k~~~vVTvEE~~~GG~Gs~Va~~l~~~~~~~~~~~v~~iGipd~F~~~G~~~~ll~~~GLdae~I~~~i~~~l~~~~ 694 (701)
T PLN02225 615 LCQNHKFLITVEEGCVGGFGSHVAQFIALDGQLDGNIKWRPIVLPDGYIEEASPREQLALAGLTGHHIAATALSLLGRTR 694 (701)
T ss_pred HHhhcCeEEEEcCCCCCchHHHHHHHHHhcCCCcCCCcEEEEecCCcCcCCCCHHHHHHHhCcCHHHHHHHHHHHHhhcc
Confidence 99999999999999889999999999999875333468999999999999999999999999999999999999998888
Q ss_pred hhhhccC
Q 004946 716 EALLLMC 722 (722)
Q Consensus 716 ~~~~~~~ 722 (722)
++|.+|+
T Consensus 695 ~~~~~~~ 701 (701)
T PLN02225 695 EALLLMS 701 (701)
T ss_pred cceEecC
Confidence 8988875
No 3
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=5.3e-138 Score=1190.90 Aligned_cols=664 Identities=61% Similarity=0.992 Sum_probs=609.3
Q ss_pred cceeeeccccCCCCCCccCCCCCCccccCCCCchhccCCCHHHHHHHHHHHHHHHHHhHhcCCCCCCCcchHHHHHHHHh
Q 004946 56 KLVTVSRICALPDIDDFFWDKEPTPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVALH 135 (722)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~p~~~~~l~~~~l~~la~eiR~~ii~~~~~~gGh~~~slg~vel~~aL~ 135 (722)
.++-|--.++..+..+|...++++|+|++||+|.|||+|+.++|+++|.+||+++++++++++||+++|||+||+++|||
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~p~dlk~l~~~~l~~la~~iR~~ii~~~~~~~GH~g~~Ls~vel~~aL~ 87 (677)
T PLN02582 8 RPSGVCASLSPEESAEYPSQRPPTPLLDTINYPIHMKNLSVKELKQLADELRSDVIFNVSKTGGHLGSSLGVVELTVALH 87 (677)
T ss_pred CcCcceeeccccccccccCCCCCCchhhhCCCHHHHhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcCccccHHHHHHHHH
Confidence 34444444454555566555556889999999999999999999999999999999999988999999999999999999
Q ss_pred hccCCCCcEEEecCCchHHHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCC
Q 004946 136 HVFHAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRE 215 (722)
Q Consensus 136 ~vf~~p~D~iv~d~GH~~y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G~A~A~~l~~~~~ 215 (722)
++|+.|+|+||||+|||+|+||++|||+++|.++|++|+++|||++.++++|.|++||+|+++|+|+|+|+|++++++++
T Consensus 88 ~~~~~p~Dr~i~s~GH~ay~~~~l~gr~~~l~~~r~~g~l~g~p~~~e~~~~~~~~G~~g~~ls~a~G~A~a~~~~~~~~ 167 (677)
T PLN02582 88 YVFNAPQDKILWDVGHQSYPHKILTGRRDKMHTMRQTNGLSGFTKRAESEYDCFGTGHSSTTISAGLGMAVGRDLKGKKN 167 (677)
T ss_pred HhhCCCCCeEEEECcchHHHHHHHHccHHHhcccccCCCcCCCCCCCCCCCceeccchhhhhHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCcc-CCCCcchhhhhhhhhhhhhhhHHHHHHHHHhhh
Q 004946 216 CIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIE-ESPKTSINALSSTLSRIQSSKSFRQLREVAKGM 294 (722)
Q Consensus 216 ~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~-~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~i 294 (722)
+|||++|||++++|++|||||+|+.+++|+++|||||+++|+|+.. +++++++|++++||.++++++.|+++|+..+.+
T Consensus 168 ~v~~viGDG~~~~G~~~Ealn~a~~~~~~li~iv~~N~~~s~~~~~~~s~~~~vg~~~~~l~~l~~~~~~~~~~~~~~~~ 247 (677)
T PLN02582 168 NVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPAPPVGALSSALSRLQSSRPLRELREVAKGV 247 (677)
T ss_pred EEEEEecccccchhhHHHHHHHHHhhCcCEEEEEECCCCccccccccCCCCCCccHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998998875 899999999999999999999999999999999
Q ss_pred hhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEEEEEeeccCCCcc
Q 004946 295 TKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAED 374 (722)
Q Consensus 295 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kG~G~~~ 374 (722)
++.++.......+++++..+.++.+.+..+||+|||+|++++||||+++|.++|+++|+...++|++||++|.|||||++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~fe~~G~~y~g~iDGHd~~~L~~al~~~k~~~~~~P~vihv~T~KGkG~~~ 327 (677)
T PLN02582 248 TKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNIDDLVTILREVKSTKTTGPVLIHVVTEKGRGYPY 327 (677)
T ss_pred HHhCcHhHHHHHHHHHHHhhhccCccccchHHHcCCeEEeeeCCCCHHHHHHHHHHHHhcCCCCCEEEEEEecCCCCCCh
Confidence 99887666777789999999888763347999999999999999999999999999998522699999999999999999
Q ss_pred cccccchhhccCCCC--CCCCCCCC--CCccchHHHHHHHHHHHHhcCCCEEEEecCCCCccchHHHHHhCCCceeeccc
Q 004946 375 TQKSEAIEKQQEGAS--DSNSLPFG--NYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGM 450 (722)
Q Consensus 375 ae~~~~~~~~H~~~~--~~tg~~~~--~~~~s~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f~~~~p~R~~d~GI 450 (722)
+|+ ++.+|||+.+ +++|++.+ ....+|+++|+++|.+++++||+|+++++||++++++..|+++||+||||+||
T Consensus 328 ae~--~~~~~H~~~~f~~~~g~~~~~~~~~~~~s~a~~~aL~~~a~~d~~vv~ita~m~g~~gl~~f~~~fP~R~fdvGI 405 (677)
T PLN02582 328 AER--AADKYHGVVKFDPATGKQFKVKAKTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFARRFPTRCFDVGI 405 (677)
T ss_pred hhc--ChhhcCCCCCCCcccCCccCCCCCCcCHHHHHHHHHHHHHccCCCEEEEeCCCCCccchHHHHHHcCccccccCc
Confidence 998 7889999887 56776543 23468999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHhcCCCeeEEEecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCccCCCCCCcCcHHHHHHhcCCCCcEE
Q 004946 451 AEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIV 530 (722)
Q Consensus 451 aE~~av~~AaGlA~~G~~p~~~t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~d~a~~~~iP~l~V 530 (722)
|||+|+++|+|||+.|+|||+++|++|++||||||+|++|++++||+|+++++|++|.||+|||+.+|++++|++|||+|
T Consensus 406 AEq~~vg~AaGLA~~G~kPvv~~fs~Fl~RA~DQI~~dval~~lpVv~v~~~aG~vg~dG~TH~~~~Dia~lr~iPnl~V 485 (677)
T PLN02582 406 AEQHAVTFAAGLACEGLKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTYMACLPNMVV 485 (677)
T ss_pred CHHHHHHHHHHHHHCCCeEEEEecHHHHHHHHHHHHHHHHhcCCCEEEEEECCCcccCCCCcccccHHHHHHhcCCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCHHHHHHHHHHHhhhCCCCEEEEecCCCcccccCCCC-CCCCccccccEEEEEeCCcEEEEEechhhHHHHHHHHH
Q 004946 531 MAPSDEDELVDMVATVASIDDRPVCFRYPRGAIVRTDLPGY-RGIPIEEIGKGKVLVEGKDVALLGYGAMVQNCLKARAL 609 (722)
Q Consensus 531 ~~Psd~~E~~~~l~~a~~~~~~Pv~ir~~r~~~~~~~~p~~-~~~~~~~igk~~vl~eG~dv~lva~Gs~v~~aleAa~~ 609 (722)
++|+|+.|++.++++|+...++|++||++|+......++.. ..+++ ++||++++++|+|++||++|++++.|++|++.
T Consensus 486 ~~Psd~~E~~~~l~~al~~~~gPv~IR~pr~~~~~~~~~~~~~~~~~-~iGk~~vlr~G~dvtIva~G~~v~~Al~Aa~~ 564 (677)
T PLN02582 486 MAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVQLPPNNKGIPI-EVGKGRILLEGERVALLGYGTAVQSCLAAASL 564 (677)
T ss_pred EeeCCHHHHHHHHHHHHhCCCCCEEEEEecCCCCCcccCCccccccc-ccCceEEEEeCCCEEEEeecHHHHHHHHHHHH
Confidence 99999999999999999766799999999986432222321 12456 89999999999999999999999999999999
Q ss_pred HHhcCCcEEEeecCccccchHHHHHHHhcCCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCH
Q 004946 610 LSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASP 689 (722)
Q Consensus 610 L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~v~~ig~~d~f~~~g~~ 689 (722)
|+++||+++|||++|+||||++++.+++++++.|||+||+..||||++|++++.+++......+++++|+||+|+++|++
T Consensus 565 L~~~GI~~~VId~~~lkPlD~~~i~~~~k~~~~vVtvEe~~~GG~Gs~va~~l~~~~~~~~~~~v~~~Gi~d~F~~~G~~ 644 (677)
T PLN02582 565 LERHGLSATVADARFCKPLDRALIRSLAKSHEVLITVEEGSIGGFGSHVAQFMALDGLLDGKLKWRPLVLPDRYIDHGAP 644 (677)
T ss_pred HHhcCCCEEEEEcCcCCCCCHHHHHHHhhhCCEEEEECCCCCCcHHHHHHHHHHhcCCccCCceeEEecCCCcccCcCCH
Confidence 99999999999999999999999999999999999999998899999999999998753234689999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHhhcchhhhhccC
Q 004946 690 TQQLALAGLTGHHIAATALSLLGRTREALLLMC 722 (722)
Q Consensus 690 ~~l~~~~gl~~~~I~~~i~~ll~~~~~~~~~~~ 722 (722)
+++++++|||+++|+++|+++++.++..+++|+
T Consensus 645 ~~L~~~~GL~~e~I~~~i~~~l~~~~~~~~~~~ 677 (677)
T PLN02582 645 ADQLAEAGLTPSHIAATVLNVLGQTREALQIMS 677 (677)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHhcccccccccC
Confidence 999999999999999999999976666777764
No 4
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=5.8e-134 Score=1147.64 Aligned_cols=602 Identities=56% Similarity=0.943 Sum_probs=559.0
Q ss_pred ccccccCCC-----CCCcccCcceeeeccccCCCCCCccCCCCCCccccCCCCchhccCCCHHHHHHHHHHHHHHHHHhH
Q 004946 40 ISRINLCPS-----SSSITSSKLVTVSRICALPDIDDFFWDKEPTPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIV 114 (722)
Q Consensus 40 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~p~~~~~l~~~~l~~la~eiR~~ii~~~ 114 (722)
-+-||-||+ .||++|+|++|| |.++.++.++|++++|++|+||+||+|.|||+|+++||+++|+|+|+++++++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~i~~p~~~k~l~~~~L~~la~eiR~~ii~~~ 99 (641)
T PLN02234 21 PSYINRNPSLKYLKPSSMSSTKYSKV-RATTFSEKGEYYSNRPPTPLLDTINHPMHMKNLSIKELKVLSDELRSDVIFNV 99 (641)
T ss_pred hhhhccCCccceecccccccccccee-EEEccCCcccccCCCCCCchhhhcCCHHHHhhCCHHHHHHHHHHHHHHHHHHH
Confidence 356788876 478999999999 88888888899999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCcchHHHHHHHHhhccCCCCcEEEecCCchHHHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCC
Q 004946 115 SKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHG 194 (722)
Q Consensus 115 ~~~gGh~~~slg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~ 194 (722)
++++||+++|||+||+++||||+|+.|+|+||||+|||+|+||++|||+++|.++||.|+++|||++.|++||.|++||+
T Consensus 100 ~~~~GHlgssLs~vEl~~aL~~vf~~p~DriI~s~GHqaya~~~ltgr~~~l~t~r~~ggl~G~p~~~es~~d~~~tGsl 179 (641)
T PLN02234 100 SKTGGHLGSNLGVVELTVALHYIFNTPHDKILWDVGHQSYPHKILTGRRGKMKTIRQTNGLSGYTKRRESEHDSFGTGHS 179 (641)
T ss_pred hhcCCCccccchHHHHHHHHHHhcCCCCCeEEEecchhHHHHHHHHhhhhhhcccccCCCcCCCCCCCCCCCcEECCCch
Confidence 98899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCcc-CCCCcchhhhhh
Q 004946 195 CNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIE-ESPKTSINALSS 273 (722)
Q Consensus 195 G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~-~~~~~~~g~l~~ 273 (722)
|++||+|+|||+|+++++.+++|||++|||++++|++|||||+|++++.||++|+|||+++|+||.. +++.+++|+++.
T Consensus 180 g~glS~a~GmA~a~~l~g~~~~v~~viGDGel~eG~~wEAl~~a~~~~~nlivIlddN~~~~~~~~q~~g~~~~v~~l~~ 259 (641)
T PLN02234 180 STTLSAGLGMAVGRDLKGMNNSVVSVIGDGAMTAGQAYEAMNNAGYLHSNMIVILNDNKQVSLPTANLDGPTQPVGALSC 259 (641)
T ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEEEccchhhhHHHHHHHHHHhhhCCCEEEEEECCCCCcccccccCCCCCCcccHHH
Confidence 9999999999999999999999999999999999999999999998889999999999998899855 688999999999
Q ss_pred hhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHh
Q 004946 274 TLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVAS 353 (722)
Q Consensus 274 ~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~ 353 (722)
+|+++++++.|.+ .....+||+|||+|+|+|||||+++|.++|+++++
T Consensus 260 ~l~~l~~~~~~~~--------------------------------~~~~~~fe~fG~~~~g~vDGHd~~~l~~al~~~k~ 307 (641)
T PLN02234 260 ALSRLQSNCGMIR--------------------------------ETSSTLFEELGFHYVGPVDGHNIDDLVSILETLKS 307 (641)
T ss_pred HHHHhhccccccc--------------------------------CCHHHHHHHcCCEEEeeECCCCHHHHHHHHHHHHh
Confidence 9999998876621 01146899999999999999999999999999987
Q ss_pred cCCCCCEEEEEEeeccCCCcccccccchhhccCCCC--CCCCCCCC--CCccchHHHHHHHHHHHHhcCCCEEEEecCCC
Q 004946 354 LGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGAS--DSNSLPFG--NYSRTYDDCFIEALVMEAEKDKDIVVVHAGME 429 (722)
Q Consensus 354 ~~~~~P~lI~v~T~kG~G~~~ae~~~~~~~~H~~~~--~~tg~~~~--~~~~s~~~a~~~~L~~~~~~d~~iv~i~ad~~ 429 (722)
.+.++|++||++|+|||||+++|+ +.++||++.+ +++|++.+ ....+|+++|+++|.+++++||+|+++++||+
T Consensus 308 ~~~~~P~vI~~~T~KGkGv~~~E~--~~~~~H~~~~~~~~~g~~~~~~~~~~sy~~af~~aL~e~a~~D~~Iv~l~adm~ 385 (641)
T PLN02234 308 TKTIGPVLIHVVTEKGRGYPYAER--ADDKYHGVLKFDPETGKQFKNISKTQSYTSCFVEALIAEAEADKDIVAIHAAMG 385 (641)
T ss_pred cCCCCCEEEEEEEecCCCcchhhc--CCcccCCCCCCCccccccccCCCCCCCHHHHHHHHHHHHHHHCcCEEEEECCCC
Confidence 533589999999999999999997 6789999887 56777654 33479999999999999999999999999999
Q ss_pred CccchHHHHHhCCCceeecccchHHHHHHHHHHhcCCCeeEEEecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCccCCC
Q 004946 430 MDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSD 509 (722)
Q Consensus 430 ~~~~l~~f~~~~p~R~~d~GIaE~~av~~AaGlA~~G~~p~~~t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~d 509 (722)
++++++.|+++||+||||+|||||+|+++|+|||++|+||||++|++|++||||||+|++|++++||+++++++|++|+|
T Consensus 386 ggt~~~~f~~~fPdR~fdvGIAEq~~Vg~AaGLA~~G~rPvv~~fs~Fl~RA~DQI~~dva~~~lpV~~v~~~aG~~g~d 465 (641)
T PLN02234 386 GGTMLNLFESRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCTIYSSFMQRAYDQVVHDVDLQKLPVRFAIDRAGLMGAD 465 (641)
T ss_pred CCcchHHHHHHccccccCCCcCHHHHHHHHHHHHHCCCeEEEEehHHHHHHHHHHHHHHHhhcCCCEEEEEeCCccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCcHHHHHHhcCCCCcEEEeeCCHHHHHHHHHHHhhhCCCCEEEEecCCCcccccCCC-CCCCCccccccEEEEEeC
Q 004946 510 GPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRYPRGAIVRTDLPG-YRGIPIEEIGKGKVLVEG 588 (722)
Q Consensus 510 G~TH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~~~~Pv~ir~~r~~~~~~~~p~-~~~~~~~~igk~~vl~eG 588 (722)
|+|||+.+|++++|++|||+|++|+|+.|++.++++|+..+++|++||++|+......+|. .+..++ ++||++++++|
T Consensus 466 G~TH~~~~Dia~lr~iPnl~V~~Psd~~E~~~~l~~a~~~~~~Pv~ir~~R~~~~~~~~~~~~~~~~~-~iGk~~vlreG 544 (641)
T PLN02234 466 GPTHCGAFDVTFMACLPNMIVMAPSDEAELFNMVATAAAIDDRPSCFRYHRGNGIGVSLPPGNKGVPL-QIGRGRILRDG 544 (641)
T ss_pred CccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCCCCCEEEEeecccccccccCCCCccccc-cCceEEEEEeC
Confidence 9999999999999999999999999999999999999876779999999998754333332 123456 89999999999
Q ss_pred CcEEEEEechhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcCCCeEEEEcCCCCCChHHHHHHHHHhcCCC
Q 004946 589 KDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIALDGLL 668 (722)
Q Consensus 589 ~dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~ 668 (722)
+|++||++|++++.|++|+++|+++||+++|||++|++|||++.+.+++++++.|||+||+..||||++|++++.+++++
T Consensus 545 ~dvtIva~G~~v~~Al~AA~~L~~~GI~v~VId~rsikPlD~~~i~sl~k~~~~vVt~Ee~~~GG~Gs~Va~~l~e~~~~ 624 (641)
T PLN02234 545 ERVALLGYGSAVQRCLEAASMLSERGLKITVADARFCKPLDVALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLL 624 (641)
T ss_pred CCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEecCCcCCCCHHHHHHHHHhCCEEEEECCCCCCcHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999998899999999999999998
Q ss_pred CCCCceEEE
Q 004946 669 DSGVKWRPI 677 (722)
Q Consensus 669 ~~~~~v~~i 677 (722)
+...+|++-
T Consensus 625 ~~~~~~~~~ 633 (641)
T PLN02234 625 DGKLKVYRT 633 (641)
T ss_pred CCCceEEEE
Confidence 877777653
No 5
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=100.00 E-value=3.1e-126 Score=1098.29 Aligned_cols=611 Identities=44% Similarity=0.694 Sum_probs=568.3
Q ss_pred ccCCCCchhccCCCHHHHHHHHHHHHHHHHHhHhcCCCCCCCcchHHHHHHHHhhccCCCCcEEEecCCchHHHHHHHhC
Q 004946 82 LDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTG 161 (722)
Q Consensus 82 l~~i~~p~~~~~l~~~~l~~la~eiR~~ii~~~~~~gGh~~~slg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltG 161 (722)
|++||+|+|||+|+.++|+++|.+||+++++++++++||+++|||+||++++||++|+.|+|+||||+|||+|+|+++||
T Consensus 1 ~~~i~~p~dl~~l~~~~l~~la~~iR~~~i~~~~~~~GH~g~~ls~vel~~aL~~~~~~~rDr~i~s~GH~~Y~~~~~~G 80 (617)
T TIGR00204 1 LSLINSPQELRLLSIDELEKLCDELRRYLLESVSASGGHLASGLGTVELTVALHYVFNTPKDQFIWDVGHQAYPHKLLTG 80 (617)
T ss_pred CCCCCCHHHHhhCCHHHHHHHHHHHHHHHHHHHhccCCCcCcchhHHHHHHHHHhhCCCCCCcEEEecchHHHHHHHHhC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhc
Q 004946 162 RRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYL 241 (722)
Q Consensus 162 r~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~ 241 (722)
|+++|.++|++|+++|||++.++++|.|++||+|+++|+|+|+|+|.++++++.+|+|++|||++++|++|||||+|+.+
T Consensus 81 ~~~~l~~~r~~g~l~g~p~~~e~~~d~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~~~GDG~~~eG~~~Ea~~~a~~~ 160 (617)
T TIGR00204 81 RREKFSTLRQKKGLHGFPKRSESEYDVFSAGHSSTSISAGLGIAVAAEKKGADRKTVCVIGDGAITAGMAFEALNHAGDL 160 (617)
T ss_pred cHHHhcchhhcCCcCCCCcCCCCCCCccCCCchHhHHHHHHHHHHHHHhhCCCCEEEEEECCcccccccHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCCh
Q 004946 242 DSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQG 321 (722)
Q Consensus 242 ~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~ 321 (722)
++|+++|||||+++ ++.+++.++.+|++++.++.|.+++...+.+++..+.......+++++.+|.++.+
T Consensus 161 ~l~~i~ii~~N~~~--------i~~~~~~~~~~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~-- 230 (617)
T TIGR00204 161 KTDMIVILNDNEMS--------ISENVGALSNHLAQLRSGSLYQSLRDGLKKIFSKLPPIKNYLAKRTEESMKGLVVP-- 230 (617)
T ss_pred CCCEEEEEECCCcc--------cCCCchHHHHHHHHhhccchHHHHHHHHHHHHhcCcchhHHHHHHHHHhhhhccCc--
Confidence 99999999999984 57789999999999999999999999999888865432333678889999998887
Q ss_pred hhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEEEEEeeccCCCcccccccchhhccCCCC--CCCCCCCC--
Q 004946 322 STLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGAS--DSNSLPFG-- 397 (722)
Q Consensus 322 ~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kG~G~~~ae~~~~~~~~H~~~~--~~tg~~~~-- 397 (722)
..+||+|||+|+++|||||+++|.++|+++++ .++|++||++|.||+||+++|+ ++.+||++.+ ++++....
T Consensus 231 ~~~f~~~G~~~~~~vDGhd~~~l~~al~~ak~--~~~P~~i~~~T~KGkG~~~~e~--~~~~~H~~~~~~~~~~~~~~~~ 306 (617)
T TIGR00204 231 GTFFEELGFNYIGPVDGHDLLELIETLKNAKK--LKGPVFLHIQTKKGKGYKPAEK--DPIGWHGVGPFDLSTGCLPKSK 306 (617)
T ss_pred cchHHHcCCcEEcccCCCCHHHHHHHHHHHhc--CCCCEEEEEEecCCCCCchhhc--ChhhccCCCCCChhhCCcCCCC
Confidence 48999999999999999999999999999987 4789999999999999999997 6778999877 34443322
Q ss_pred CCccchHHHHHHHHHHHHhcCCCEEEEecCCCCccchHHHHHhCCCceeecccchHHHHHHHHHHhcCCCeeEEEecHhh
Q 004946 398 NYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAF 477 (722)
Q Consensus 398 ~~~~s~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f~~~~p~R~~d~GIaE~~av~~AaGlA~~G~~p~~~t~~~F 477 (722)
+...+|+++|+++|.+++++|++|+++++||.+++++++|+++||+||||+|||||+|+++|+|||+.|++||+++|++|
T Consensus 307 ~~~~~~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~~~~f~~~fP~R~~d~GIaEq~~vg~AaGlA~~G~~Pvv~~~a~F 386 (617)
T TIGR00204 307 SALPSYSKIFSDTLCELAKKDNKIVGITPAMPEGSGLDKFSRKFPDRYFDVAIAEQHAVTFAAGMAIEGYKPFVAIYSTF 386 (617)
T ss_pred CCCccHHHHHHHHHHHHHhhCcCEEEEECCccCCcChHHHHHHCccccccCCccHHHHHHHHHHHHHCCCEEEEEecHHH
Confidence 23468999999999999999999999999998888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEEeCCCccCCCCCCcCcHHHHHHhcCCCCcEEEeeCCHHHHHHHHHHHhhhCCCCEEEE
Q 004946 478 LQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFR 557 (722)
Q Consensus 478 l~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~~~~Pv~ir 557 (722)
++||||||++++|++++||+++++++|++|.||+|||+++|+++|+++|||+|++|+|+.|++.++++|++..++|+|||
T Consensus 387 l~ra~dQi~~~~a~~~lpV~i~~~~~G~~g~dG~tH~~~~dia~lr~iPgl~V~~Psd~~e~~~~l~~a~~~~~~Pv~ir 466 (617)
T TIGR00204 387 LQRAYDQVVHDVCIQKLPVLFAIDRAGIVGADGETHQGAFDISYLRCIPNMVIMAPSDENELRQMLYTGYHYDDGPIAVR 466 (617)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEECCCcCCCCCcccccchHHHHHhcCCCcEEEeeCCHHHHHHHHHHHHhCCCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997556999999
Q ss_pred ecCCCcccccCCCCCCCCccccccEEEEEeCCcEEEEEechhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHh
Q 004946 558 YPRGAIVRTDLPGYRGIPIEEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELC 637 (722)
Q Consensus 558 ~~r~~~~~~~~p~~~~~~~~~igk~~vl~eG~dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~ 637 (722)
++|+.......+. ..+.+ ++||++++++|+|++||++|.|++.|++|++.|+++||+++|||++|++|||++++.+++
T Consensus 467 ~~r~~~~~~~~~~-~~~~~-~~Gk~~vlr~G~dvtIva~G~~v~~al~Aa~~L~~~gi~~~VId~~~lkPlD~e~i~~~~ 544 (617)
T TIGR00204 467 YPRGNAVGVELTP-EPEKL-PIGKSEVLRKGEKILILGFGTLVPEALEVAESLNEKGIEATVVDARFVKPLDEELILEIA 544 (617)
T ss_pred EccCCcCCcccCC-ccccc-cCCceEEEEcCCCEEEEEcCHHHHHHHHHHHHHHhcCCCEEEEecCcCCcCCHHHHHHHH
Confidence 9998743222211 13567 899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHh
Q 004946 638 QNHTFLITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLL 711 (722)
Q Consensus 638 ~~~~~vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~v~~ig~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~ll 711 (722)
+++++||||||+. .||||++|++++.++++ ..+++++|++|.|+++|+++++++++|||+++|+++|++++
T Consensus 545 ~k~~~vvtvEE~~~~GGlGs~v~~~l~~~~~---~~~v~~ig~~d~~~~~g~~~~L~~~~Gl~~~~I~~~i~~~~ 616 (617)
T TIGR00204 545 ASHEKLVTVEENAIMGGAGSAVLEFLMDQNK---LVPVKRLGIPDFFIPHGTQEEVLAELGLDTAGMEAKILAWL 616 (617)
T ss_pred hhcCeEEEEECCCCccChHHHHHHHHHhcCC---CCCeEEEeCCCcCcCCCCHHHHHHHHCcCHHHHHHHHHHhh
Confidence 9999999999998 79999999999999873 46899999999999999999999999999999999998875
No 6
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=2.1e-124 Score=1085.95 Aligned_cols=625 Identities=50% Similarity=0.781 Sum_probs=579.6
Q ss_pred CCCCccccCCCCchhccCCCHHHHHHHHHHHHHHHHHhHhcCCCCCCCcchHHHHHHHHhhccCCCCcEEEecCCchHHH
Q 004946 76 KEPTPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYA 155 (722)
Q Consensus 76 ~~~~~~l~~i~~p~~~~~l~~~~l~~la~eiR~~ii~~~~~~gGh~~~slg~vel~~aL~~vf~~p~D~iv~d~GH~~y~ 155 (722)
+|.+++|++||+|.|||+|+.++|+++|++||+++++++++.+||+|++||+||++++||++|+.|+|+||||+|||+|+
T Consensus 3 ~~~~~~l~~i~~p~dl~~l~~~~l~~~a~~iR~~ii~~~~~~~GH~g~~ls~vel~~aL~~~~~~prDr~i~s~GH~~Y~ 82 (641)
T PRK12571 3 RPKTPLLDRIKGPADLRALSDAELEQLADELRAEVISAVSETGGHLGSSLGVVELTVALHAVFNTPKDKLVWDVGHQCYP 82 (641)
T ss_pred CCCCChhhhcCCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCCcCCCchHHHHHHHHHHhcCCCCCcEEEECchHHHH
Confidence 45678999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred HHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHH
Q 004946 156 HKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAM 235 (722)
Q Consensus 156 h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAl 235 (722)
|++||||+++|.++|+.|+++|||++.|+++|.++.||.++++|.|+|+|+|.++.+++++|||++|||++++|++|||+
T Consensus 83 ~~~l~g~~~~l~~~r~~~~l~g~p~~~e~~~~~~~~g~~~gslg~a~G~A~a~~~~~~~~~v~~v~GDG~~~eG~~~Eal 162 (641)
T PRK12571 83 HKILTGRRDRFRTLRQKGGLSGFTKRSESEYDPFGAAHSSTSISAALGFAKARALGQPDGDVVAVIGDGSLTAGMAYEAL 162 (641)
T ss_pred HHHHhCCHHHHhhhhhCCCcCCCCCCCcCCCCCcccCCCcChHHHHHHHHHHHHHhCCCCeEEEEEeCchhhcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhc
Q 004946 236 SNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARG 315 (722)
Q Consensus 236 n~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~ 315 (722)
++|+.+++|+++|+|||+++ ++.++++++.++++++.++.|+++|+..+.+++.++.++....+++++.++.
T Consensus 163 ~~a~~~~~~li~I~dnN~~~--------i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (641)
T PRK12571 163 NNAGAADRRLIVILNDNEMS--------IAPPVGALAAYLSTLRSSDPFARLRAIAKGVEERLPGPLRDGARRARELVTG 234 (641)
T ss_pred HHHHHhCCCEEEEEECCCee--------ecCCccHHHHHHHHHhcCcchHHHHHHHHHHHhhcchhHHHHHHHHHHhhhh
Confidence 99999999999999999984 5778999999999999999999999999999999988888888999999999
Q ss_pred ccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEEEEEeeccCCCcccccccchhhccCCCC--CCCC
Q 004946 316 MIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGAS--DSNS 393 (722)
Q Consensus 316 ~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kG~G~~~ae~~~~~~~~H~~~~--~~tg 393 (722)
++.+ ..+||+|||+|+++|||||+++|.++|+++++. .++|++||++|+||+||+++|+ ++.+|||.++ ..++
T Consensus 235 ~~~~--~~~f~a~G~~~~~~vdGhd~~~l~~al~~ak~~-~~~P~~I~~~T~kGkG~~~~e~--~~~~~Hg~~~f~~~~~ 309 (641)
T PRK12571 235 MIGG--GTLFEELGFTYVGPIDGHDMEALLSVLRAARAR-ADGPVLVHVVTEKGRGYAPAEA--DEDKYHAVGKFDVVTG 309 (641)
T ss_pred ccch--hhHHHHcCCEEECccCCCCHHHHHHHHHHHHhC-CCCCEEEEEEecCccCcchhhc--CCCcccCCCCcCCCCC
Confidence 8775 579999999999999999999999999999873 3789999999999999999997 6789999987 4455
Q ss_pred CCCC--CCccchHHHHHHHHHHHHhcCCCEEEEecCCCCccchHHHHHhCCCceeecccchHHHHHHHHHHhcCCCeeEE
Q 004946 394 LPFG--NYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFC 471 (722)
Q Consensus 394 ~~~~--~~~~s~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f~~~~p~R~~d~GIaE~~av~~AaGlA~~G~~p~~ 471 (722)
++.+ +...+|+++|+++|.+++++||+|+++++||.+++++..|+++||+||||+||+||+|+++|+|||+.|+|||+
T Consensus 310 ~~~~~~~~~~~~~~~f~~~L~~la~~d~~iv~isadl~~~~~~~~f~~~~p~R~id~GIaE~~mvg~AaGlA~~G~~P~v 389 (641)
T PRK12571 310 LQKKSAPSAPSYTSVFGEELTKEAAEDSDIVAITAAMPLGTGLDKLQKRFPNRVFDVGIAEQHAVTFAAGLAAAGLKPFC 389 (641)
T ss_pred cccCCCccchhHHHHHHHHHHHHHhhCCCEEEEeCCccCCCChHHHHHhCCCcccccCccHHHHHHHHHHHHHCCCEEEE
Confidence 4322 23468999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCccCCCCCCcCcHHHHHHhcCCCCcEEEeeCCHHHHHHHHHHHhhhCC
Q 004946 472 IIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDD 551 (722)
Q Consensus 472 ~t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~~~ 551 (722)
+||++|++||+|||++++|++++||+++++++|++|+||+|||+++|++++|++|||+|++|+|+.|++.++++|++..+
T Consensus 390 ~~f~~Fl~ra~dQI~~~~a~~~lpv~~v~~~~G~~g~dG~THq~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~ 469 (641)
T PRK12571 390 AVYSTFLQRGYDQLLHDVALQNLPVRFVLDRAGLVGADGATHAGAFDLAFLTNLPNMTVMAPRDEAELRHMLRTAAAHDD 469 (641)
T ss_pred EehHHHHHHHHHHHHHHHhhcCCCeEEEEECCCcCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999988999999999999999999999999999999999999999987558
Q ss_pred CCEEEEecCCCcccccCCCCCCCCccccccEEEEEeCCcEEEEEechhhHHHHHHHHHHHhcCCcEEEeecCccccchHH
Q 004946 552 RPVCFRYPRGAIVRTDLPGYRGIPIEEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIK 631 (722)
Q Consensus 552 ~Pv~ir~~r~~~~~~~~p~~~~~~~~~igk~~vl~eG~dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e 631 (722)
+|++||++|+......+|.. .+.+ ++||+.++++|+|++||++|++++.|++|++.|+++||+++|||++|++|||++
T Consensus 470 ~P~~ir~~r~~~~~~~~~~~-~~~~-~~gk~~vlr~G~ditIva~G~~v~~aleAa~~L~~~Gi~v~VId~~~lkPlD~~ 547 (641)
T PRK12571 470 GPIAVRFPRGEGVGVEIPAE-GTIL-GIGKGRVPREGPDVAILSVGAHLHECLDAADLLEAEGISVTVADPRFVKPLDEA 547 (641)
T ss_pred CcEEEEEecCcCCccccCCC-Cccc-cCceeEEEecCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEcCcCCCcCHH
Confidence 99999999986433233322 3456 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCeEEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHH
Q 004946 632 LVRELCQNHTFLITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSL 710 (722)
Q Consensus 632 ~i~~~~~~~~~vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~v~~ig~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~l 710 (722)
++.++++++ +++|+||+. .||||++|++++.++++.+...+++++|++|.|+++|+.+++++++|+|+++|+++|+++
T Consensus 548 ~i~sv~k~~-~vvvveE~~~~gG~g~~v~~~l~~~~~~~l~~~v~~ig~~d~f~~~g~~~el~~~~gl~~~~I~~~i~~~ 626 (641)
T PRK12571 548 LTDLLVRHH-IVVIVEEQGAMGGFGAHVLHHLADTGLLDGGLKLRTLGLPDRFIDHASREEMYAEAGLTAPDIAAAVTGA 626 (641)
T ss_pred HHHHHhhhC-CEEEEECCCCCCCHHHHHHHHHHhcCccccCCCeEEEecCCcCCCCCCHHHHHHHhCcCHHHHHHHHHHH
Confidence 998887766 677777776 799999999999999875446789999999999999999999999999999999999999
Q ss_pred hhcchh
Q 004946 711 LGRTRE 716 (722)
Q Consensus 711 l~~~~~ 716 (722)
++..++
T Consensus 627 l~~~~~ 632 (641)
T PRK12571 627 LARLSG 632 (641)
T ss_pred HHhccC
Confidence 876544
No 7
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=1.5e-119 Score=1037.28 Aligned_cols=574 Identities=31% Similarity=0.522 Sum_probs=526.0
Q ss_pred cccCCCCchhccCCCHHHHHHHHHHHHHHHHHhHhcCCCCCCCcchHHHHHHHHhhccCCCCcEEEecCCchHHHHHHHh
Q 004946 81 ILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILT 160 (722)
Q Consensus 81 ~l~~i~~p~~~~~l~~~~l~~la~eiR~~ii~~~~~~gGh~~~slg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~lt 160 (722)
+|++|++|.|||+|+.+||++||+|||.++++.+++++||+++|||+||+++|||++||.|+|+||||+|||+|+|+++|
T Consensus 2 ~l~~~~~p~d~~~l~~~~l~~l~~~ir~~~~~~~~~~~Gh~~~~lg~vel~~al~~~f~~~~D~ii~d~ghr~~~~~l~~ 81 (581)
T PRK12315 2 YLEKINSPADLKKLSLDELEQLASEIRTALLEKDSAHGGHVGPNLGVVELTIALHYVFNSPKDKIVWDVSHQSYPHKMLT 81 (581)
T ss_pred chhhcCCHHHHhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcCcchhHHHHHHHHHhhcCCCCCcEEEecCCchHHHHHHc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhh
Q 004946 161 GRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGY 240 (722)
Q Consensus 161 Gr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~ 240 (722)
||...+.+.|++|+++|||++.||+||.|++||.|+++|+|+|+|+|+++++.+++|||++|||++++|++|||||+|+.
T Consensus 82 G~~~~~~~~~~~g~~~G~~~~~~s~~~~~~~g~~~~~ls~A~G~A~A~k~~~~~~~vv~~iGDG~~~eG~~~EAln~A~~ 161 (581)
T PRK12315 82 GRKEAFLDPDHYDDVTGYTNPEESEHDFFTVGHTSTSIALATGLAKARDLKGEKGNIIAVIGDGSLSGGLALEGLNNAAE 161 (581)
T ss_pred CCccchhhHHHcCCCCCCCCCCCCCCCCcCCCcHHHHHHHHHHHHHHHHhcCCCCeEEEEECchhhhcchHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCC
Q 004946 241 LDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQ 320 (722)
Q Consensus 241 ~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~ 320 (722)
+++|+|+||+||+++ +++++++++.++.+++.... .+
T Consensus 162 ~k~~li~Ii~dN~~s--------i~~~~~~~~~~l~~~~~~~~-----------------------------------~~ 198 (581)
T PRK12315 162 LKSNLIIIVNDNQMS--------IAENHGGLYKNLKELRDTNG-----------------------------------QS 198 (581)
T ss_pred hCCCEEEEEECCCCc--------CCCCCchhhhhhhhhhhccc-----------------------------------cc
Confidence 999999999999984 56678777666654432110 01
Q ss_pred hhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEEEEEeeccCCCcccccccchhhccCCCC--CCCCCCCC-
Q 004946 321 GSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGAS--DSNSLPFG- 397 (722)
Q Consensus 321 ~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kG~G~~~ae~~~~~~~~H~~~~--~~tg~~~~- 397 (722)
...+|++|||+|++++||||++++.++++++++ .++|++||++|.||+||++++. ++.+||++.+ ..+|+..+
T Consensus 199 ~~~~~~a~G~~~~~v~DG~D~~~l~~a~~~a~~--~~gP~~i~~~T~kG~G~~~~~~--~~~~~h~~~~f~~~~~~~~~~ 274 (581)
T PRK12315 199 ENNLFKAMGLDYRYVEDGNDIESLIEAFKEVKD--IDHPIVLHIHTLKGKGYQPAEE--NKEAFHWHMPFDLETGQSKVP 274 (581)
T ss_pred HHHHHHhcCCeEEEeeCCCCHHHHHHHHHHHHh--CCCCEEEEEEeecCCCCChhhc--CHHhcCCCCCCCcccCcccCC
Confidence 246899999999988899999999999999987 5899999999999999988765 6889999865 34554332
Q ss_pred CCccchHHHHHHHHHHHHhcCCCEEEEecCCCCccchHHHHHhCCCceeecccchHHHHHHHHHHhcCCCeeEEEecHhh
Q 004946 398 NYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAF 477 (722)
Q Consensus 398 ~~~~s~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f~~~~p~R~~d~GIaE~~av~~AaGlA~~G~~p~~~t~~~F 477 (722)
....+|+++|+++|.+++++|++|+++++||++++++..|+++||+||||+|||||+|+++|+|||+.|+|||+.+|++|
T Consensus 275 ~~~~~~~~~~~~~l~~~~~~d~~i~~i~~~~~~~~~~~~f~~~fP~R~id~GIaEq~~v~~AaGlA~~G~~Pvv~~fs~F 354 (581)
T PRK12315 275 ASGESYSSVTLDYLLKKIKEGKPVVAINAAIPGVFGLKEFRKKYPDQYVDVGIAEQESVAFASGIAANGARPVIFVNSTF 354 (581)
T ss_pred CCCcCHHHHHHHHHHHHhccCCCEEEEeCccccccCcHHHHHhccccccCCCchHHHHHHHHHHHHHCcCeEEEEeeHHH
Confidence 23568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEEeCCCccCCCCCCcCcHHHHHHhcCCCCcEEEeeCCHHHHHHHHHHHhhhCCCCEEEE
Q 004946 478 LQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFR 557 (722)
Q Consensus 478 l~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~~~~Pv~ir 557 (722)
++||||||++++|++++||+++++++|+++ ||+|||+++|+++||++|||+|++|+|+.|++.++++|++..++|++||
T Consensus 355 l~ra~dQi~~d~a~~~lpv~~~~~~~g~~~-dG~TH~~~~Dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~gP~~ir 433 (581)
T PRK12315 355 LQRAYDQLSHDLAINNNPAVMIVFGGSISG-NDVTHLGIFDIPMISNIPNLVYLAPTTKEELIAMLEWALTQHEHPVAIR 433 (581)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEECCcccC-CCccccccHHHHHHhcCCCCEEEecCCHHHHHHHHHHHHhCCCCcEEEE
Confidence 999999999999999999999999999987 9999999999999999999999999999999999999987557999999
Q ss_pred ecCCCcccccCCCCCCCCccccccEEEEEeCCcEEEEEechhhHHHHHHHHHHHhc-CCcEEEeecCccccchHHHHHHH
Q 004946 558 YPRGAIVRTDLPGYRGIPIEEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKL-GIDVTVADARFCKPLDIKLVREL 636 (722)
Q Consensus 558 ~~r~~~~~~~~p~~~~~~~~~igk~~vl~eG~dv~lva~Gs~v~~aleAa~~L~~~-Gi~v~Vidl~~lkPld~e~i~~~ 636 (722)
++|+..... +.. ...+ ..+|+.++++|+|++||++|++++.|++|++.|+++ ||+++|||++|+||||++.+.++
T Consensus 434 ~~r~~~~~~--~~~-~~~~-~~~k~~v~~~g~dvtiia~G~~v~~Al~Aa~~L~~~~gi~~~Vid~~~ikPlD~~~i~~~ 509 (581)
T PRK12315 434 VPEHGVESG--PTV-DTDY-STLKYEVTKAGEKVAILALGDFYELGEKVAKKLKEELGIDATLINPKFITGLDEELLEKL 509 (581)
T ss_pred EcCCccCCC--CCC-ccCc-ccceEEEEecCCCEEEEEEchHHHHHHHHHHHHhhhcCCCEEEEecCcCCCCCHHHHHHH
Confidence 999874321 111 1234 456888999999999999999999999999999998 99999999999999999999999
Q ss_pred hcCCCeEEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHh
Q 004946 637 CQNHTFLITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLL 711 (722)
Q Consensus 637 ~~~~~~vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~v~~ig~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~ll 711 (722)
.++++.|||+||+. .||||++|++++.+++ .+++++|+||.|+++|+++++++++|||+++|+++|++++
T Consensus 510 ~~~~~~vvtvEe~~~~GG~gs~v~~~l~~~~-----~~~~~~gi~d~f~~~g~~~~l~~~~Gl~~~~I~~~i~~~l 580 (581)
T PRK12315 510 KEDHELVVTLEDGILDGGFGEKIARYYGNSD-----MKVLNYGAKKEFNDRVPVEELYKRNHLTPEQIVEDILSVL 580 (581)
T ss_pred HhhCCEEEEEcCCCcCCCHHHHHHHHHHcCC-----CeEEEecCCCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHh
Confidence 99999999999998 6999999999998764 4789999999999999999999999999999999999875
No 8
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=7.7e-111 Score=969.33 Aligned_cols=573 Identities=51% Similarity=0.788 Sum_probs=518.9
Q ss_pred CCCCccccCCCCchhccCCCHHHHHHHHHHHHHHHHHhHhcCCCCCCCcchHHHHHHHHhhccCCCCcEEEecCCchHHH
Q 004946 76 KEPTPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYA 155 (722)
Q Consensus 76 ~~~~~~l~~i~~p~~~~~l~~~~l~~la~eiR~~ii~~~~~~gGh~~~slg~vel~~aL~~vf~~p~D~iv~d~GH~~y~ 155 (722)
++.+|+|++|++|+|||+|+.++|+++|+++|..+++++.+.+||+|++||++|++++||++|+.++|+||||+||++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~iR~~~~~~~~~~~gH~g~~ls~~~i~~~L~~~~~~~rDr~ils~GH~~y~ 80 (580)
T PRK05444 1 IPKYPLLDTINSPADLKKLSEEELPQLADEIREFLIDVVSKTGGHLGSNLGVVELTVALHYVFDTPKDRIIWDVGHQAYP 80 (580)
T ss_pred CCCCchhhccCCHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcCCCccHHHHHHHHHHhcCCCCccEEEeccHHHHH
Confidence 35679999999999999999999999999999999999998899999999999999999999998999999999999999
Q ss_pred HHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHc-CCCCeEEEEecCCCcccchHHHH
Q 004946 156 HKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIK-GKRECIVTVISNGTTMAGQAYEA 234 (722)
Q Consensus 156 h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G~A~A~~l~-~~~~~Vv~viGDGa~~~G~~~EA 234 (722)
|++++|+.+++.++|+.|+++|||++.+++++++++|++|+++|+|+|+|+|.+++ +++++|||++|||+++||++|||
T Consensus 81 ~~~~~g~~~~l~~~~~~~s~~g~p~~~~~~~~~~~~G~lG~gl~~AvG~A~a~~~~~~~~~~v~~i~GDG~l~eG~~~Ea 160 (580)
T PRK05444 81 HKILTGRRDRFDTLRQKGGLSGFPKRSESEYDTFGAGHSSTSISAALGMAKARDLKGGEDRKVVAVIGDGALTGGMAFEA 160 (580)
T ss_pred HHHHhCcHHHhcCcccCCCCCCCCCCCCCCCeeECCChHHHHHHHHHHHHHHHHhhCCCCCeEEEEEcccccccCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988 58899999999999999999999
Q ss_pred HHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhh
Q 004946 235 MSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYAR 314 (722)
Q Consensus 235 ln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~ 314 (722)
+++|++++.|+++|+|||+++ ++.+++.+..++.
T Consensus 161 l~~A~~~~~nli~IvdnN~~~--------i~~~~~~~~~~~~-------------------------------------- 194 (580)
T PRK05444 161 LNNAGDLKSDLIVILNDNEMS--------ISPNVGALSNYLA-------------------------------------- 194 (580)
T ss_pred HHHHHhhCCCEEEEEECCCCc--------CCCcchhhhhhhc--------------------------------------
Confidence 999999999999999999983 2333332110000
Q ss_pred cccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEEEEEeeccCCCcccccccchhhccCCCC--CCC
Q 004946 315 GMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGAS--DSN 392 (722)
Q Consensus 315 ~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kG~G~~~ae~~~~~~~~H~~~~--~~t 392 (722)
..+...+|++|||++++++||||++++.++++++++ .++|++|+++|.||+||+++|+ ++.+||+.++ ...
T Consensus 195 ---~~~~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~--~~~P~lI~~~T~kg~G~~~~e~--~~~~~h~~~~~~~~~ 267 (580)
T PRK05444 195 ---RLRSSTLFEELGFNYIGPIDGHDLDALIETLKNAKD--LKGPVLLHVVTKKGKGYAPAEA--DPIKYHGVGKFDPET 267 (580)
T ss_pred ---cccHHHHHHHcCCCeeeeeCCCCHHHHHHHHHHHHh--CCCCEEEEEEecCCcCCChhhc--CccccCCCCCCCccc
Confidence 001145899999999977999999999999999987 4799999999999999999986 6778998876 222
Q ss_pred CCCCC---CCccchHHHHHHHHHHHHhcCCCEEEEecCCCCccchHHHHHhCCCceeecccchHHHHHHHHHHhcCCCee
Q 004946 393 SLPFG---NYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKP 469 (722)
Q Consensus 393 g~~~~---~~~~s~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f~~~~p~R~~d~GIaE~~av~~AaGlA~~G~~p 469 (722)
+...+ ....+|+++|+++|.+++++||+++++++|+.+++++..|+++||+||||+||+||+|+++|+|||++|++|
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~vv~~~adl~~~~~~~~f~~~~p~R~i~~GIaE~~mvg~A~GlA~~G~~p 347 (580)
T PRK05444 268 GEQPKSSKPGKPSYTKVFGETLCELAEKDPKIVAITAAMPEGTGLVKFSKRFPDRYFDVGIAEQHAVTFAAGLATEGLKP 347 (580)
T ss_pred CCccccCCCCcccHHHHHHHHHHHHHhhCCCEEEEECCcCCCCCHHHHHHHhhhhccCCChHHHHHHHHHHHHHHCCCee
Confidence 22111 123689999999999999999999999999988888989999999999999999999999999999999999
Q ss_pred EEEecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCccCCCCCCcCcHHHHHHhcCCCCcEEEeeCCHHHHHHHHHHHhhh
Q 004946 470 FCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASI 549 (722)
Q Consensus 470 ~~~t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~ 549 (722)
|+++|++|++|++|||++++|++++||+++++++|++|+||+|||+++|++++|++||++|++|+|++|++.++++|++.
T Consensus 348 ~~~~f~~F~~ra~dQi~~~~a~~~~pv~~v~~~~G~~g~dG~tH~~~edia~lr~iP~l~V~~Psd~~e~~~~l~~a~~~ 427 (580)
T PRK05444 348 VVAIYSTFLQRAYDQVIHDVALQNLPVTFAIDRAGLVGADGPTHQGAFDLSYLRCIPNMVIMAPSDENELRQMLYTALAY 427 (580)
T ss_pred EEEeeHHHHHHHHHHHHHHhhhcCCCEEEEEeCCCcCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999988999999999999999999999999999999999999999975
Q ss_pred CCCCEEEEecCCCcccccCCCCCCCCccccccEEEEEeCCcEEEEEechhhHHHHHHHHHHHhcCCcEEEeecCccccch
Q 004946 550 DDRPVCFRYPRGAIVRTDLPGYRGIPIEEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLD 629 (722)
Q Consensus 550 ~~~Pv~ir~~r~~~~~~~~p~~~~~~~~~igk~~vl~eG~dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld 629 (722)
.++|+|||++|+..+....+ ..+++ ++||++++++|+|++||++|++++.|++|++.|+ +++|||++|++|||
T Consensus 428 ~~~P~~ir~~r~~~~~~~~~--~~~~~-~~Gk~~vl~~G~dvtIia~G~~v~~al~Aa~~L~----~~~VId~~~i~p~D 500 (580)
T PRK05444 428 DDGPIAIRYPRGNGVGVELP--ELEPL-PIGKGEVLREGEDVAILAFGTMLAEALKAAERLA----SATVVDARFVKPLD 500 (580)
T ss_pred CCCcEEEEecCCCCCCCCCC--Ccccc-cCCceEEEEcCCCEEEEEccHHHHHHHHHHHHhC----CCEEEEeCcCCccC
Confidence 68999999999875432212 13567 8999999999999999999999999999999995 89999999999999
Q ss_pred HHHHHHHhcCCCeEEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHH
Q 004946 630 IKLVRELCQNHTFLITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATAL 708 (722)
Q Consensus 630 ~e~i~~~~~~~~~vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~v~~ig~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~ 708 (722)
++++.+++++++++|||||+. .||||++|++++.++++ +.+++++|++|.|+++|+++++++++|||+++|+++|+
T Consensus 501 ~~~i~~~~~~~~~vv~vEe~~~~gG~g~~va~~l~~~~~---~~~v~~ig~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~ 577 (580)
T PRK05444 501 EELLLELAAKHDLVVTVEEGAIMGGFGSAVLEFLADHGL---DVPVLNLGLPDEFIDHGSREELLAELGLDAEGIARRIL 577 (580)
T ss_pred HHHHHHHHhcCCeEEEEECCCCCCCHHHHHHHHHHhhcC---CCCEEEEecCCcCCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 999999999999999999998 59999999999999875 45899999999999999999999999999999999998
Q ss_pred HHh
Q 004946 709 SLL 711 (722)
Q Consensus 709 ~ll 711 (722)
+++
T Consensus 578 ~~~ 580 (580)
T PRK05444 578 ELL 580 (580)
T ss_pred hhC
Confidence 753
No 9
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-97 Score=808.59 Aligned_cols=602 Identities=29% Similarity=0.400 Sum_probs=496.6
Q ss_pred CccccCCCCchhccCCCHHHHHHHHHHHHHHHHHhHhcCCCCCCCcchHHHHHHHHhh-c--cC--CC----CcEEEecC
Q 004946 79 TPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVALHH-V--FH--AP----VDKILWDV 149 (722)
Q Consensus 79 ~~~l~~i~~p~~~~~l~~~~l~~la~eiR~~ii~~~~~~gGh~~~slg~vel~~aL~~-v--f~--~p----~D~iv~d~ 149 (722)
+|.+++++.|..+++|++.+++.++++. +||+++++|.+++...|+. + |+ .| +|||+||+
T Consensus 2 ~~~~~~~~~~~~~n~lri~si~~~~~a~-----------sghp~s~~s~A~~~~vlf~~~mr~~~~~p~~~n~Drfvls~ 70 (632)
T KOG0523|consen 2 TPSQDSQILKDAVNNLRILSIDATSAAK-----------SGHPGSPLSLAPIMHVLFFEVMRYNPADPYWFNRDRFVLSN 70 (632)
T ss_pred CchhhhhhhHHHhhhhhhhhHHHHHhhh-----------cCCCCCccccchhhhhhhhhheecccCCcCCCCCceEEEec
Confidence 5678888888888887777666655544 5999999999988888874 2 32 12 69999999
Q ss_pred CchH---HHHHHHhC--chhhhhHHHhhCC-CCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCC-CCeEEEEec
Q 004946 150 GEQT---YAHKILTG--RRSLIHTLRKKDG-ISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGK-RECIVTVIS 222 (722)
Q Consensus 150 GH~~---y~h~~ltG--r~~~~~~~r~~gg-l~g~~~~~es~~d~~~~G~~G~~ls~A~G~A~A~~l~~~-~~~Vv~viG 222 (722)
||+| |+|++|+| +.+++.++||.++ ..|||. .+++++.++|||+|++|+.|+|||++++++++ +++|+|++|
T Consensus 71 GHa~~llYa~~~l~G~~~~edl~~~Rq~~s~t~ghp~-~~~~~v~v~TG~lgQgis~a~GmA~~~k~~~k~~~rv~~vlG 149 (632)
T KOG0523|consen 71 GHACPLLYAHWHLAGYDREEDLKNFRQIGSDTPGHPE-PELPGVEVATGPLGQGISNAVGMAYAGKHLGKASNRVYCVLG 149 (632)
T ss_pred cccchHHHHHHHHhccCcHHHHHHHHhhCCCCCCCCc-ccCCCceeccCCccchHHHHHHHHHHHHhhccccceEEEEEc
Confidence 9999 99999999 8999999999998 556665 68999999999999999999999999999998 999999999
Q ss_pred CCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCcc-CCCCcchhhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCcc
Q 004946 223 NGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIE-ESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRG 301 (722)
Q Consensus 223 DGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~-~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~ 301 (722)
||+++||++||||++|++++++.+++++||+..++++.+ .+.+.++..++ +-..++....+.|.+
T Consensus 150 DG~~~eG~~~EA~s~Ag~l~ldnLVai~D~n~is~~g~t~~~~~~dV~~~r--------------~ea~g~~~~~V~~~d 215 (632)
T KOG0523|consen 150 DGCLTEGSVWEAMSLAGHLKLDNLVAIYDNNKISIDGATSLGFDEDVYQLR--------------FEAFGWNVIIVDGGD 215 (632)
T ss_pred CchhccchHHHHHhhhhhcccCCEEEEEccccccCCCCCcccccccHHHHH--------------HHHhCceEEEEcCcC
Confidence 999999999999999999996655566666555677666 35555555332 222222222233555
Q ss_pred HHHHHHHHHH--HhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEEEEEeeccCCCccccccc
Q 004946 302 MHEWAAKVDE--YARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSE 379 (722)
Q Consensus 302 ~~~~~~~~~~--~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kG~G~~~ae~~~ 379 (722)
+..+.+.+.+ +++++...-..+.|+++|+.+++++++|......+.++++++..+- |+++++.+.|+++||..+.+.
T Consensus 216 ~d~i~ka~~~a~~~k~kpt~i~~~t~~g~G~~~ig~~~~Hg~pl~~~~~~~~k~~~~~-P~~~~~v~~~~~~~p~~~~~~ 294 (632)
T KOG0523|consen 216 VDEIRKAIGKAKSVKGKPTAIKATTFIGRGSPYIGSESVHGAPLGEDDVERVKSIKGL-PVLIFVVPEKVKLYPEKPVED 294 (632)
T ss_pred HHHHHHHHhhhhhccCCceeeeeeeeeecCccccccccccCCcchhhHHHHHHhhcCC-cceeEEeccccccCCCccccc
Confidence 5555555543 3466555445788999999999999999998888888888875334 999999999999999877633
Q ss_pred chhhccCCCC--CCCCCCCC--CCccchHHHHHHHHHHHHhcCCCEEEEecCCCCccchHHHHHhCCCceeecccchHHH
Q 004946 380 AIEKQQEGAS--DSNSLPFG--NYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHA 455 (722)
Q Consensus 380 ~~~~~H~~~~--~~tg~~~~--~~~~s~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f~~~~p~R~~d~GIaE~~a 455 (722)
.....|.++. ..+.++++ .+...++++|.++|.++++.+|+++++++||..|+.++-|.++||+|||++||+||+|
T Consensus 295 ~~~~~~~i~~~~~~~~p~yk~~Dk~~Atrk~~~~aL~~l~~~~~~vI~~~ad~~~st~td~~~~~~p~R~i~~giaEq~m 374 (632)
T KOG0523|consen 295 ARAISVRIPKIWEKSLPTYKVGDKAVATRKAFGEALAALAEADPRVIGGSADLKNSTLTDFFPKRFPERFIECGIAEQNM 374 (632)
T ss_pred ccccccCcCccccccCCccccCChhhhHHHHHHHHHHHHhhcCcCeEEEecccCCCchhhhccccCccceEEEeeehhhh
Confidence 3456677765 45555655 4447899999999999999999999999999999999989999999999999999999
Q ss_pred HHHHHHHhcCCC-eeEEEecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCc-cCCCCCCcCcHHHHHHhcCCCCcEEEee
Q 004946 456 VTFSAGLACGGL-KPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAP 533 (722)
Q Consensus 456 v~~AaGlA~~G~-~p~~~t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~d~a~~~~iP~l~V~~P 533 (722)
+++|+|+|..|. +|||.||+.|++|||||++++ ++.+.++++++++.|+ +|+||||||++||+++||++||++||+|
T Consensus 375 v~ia~G~a~~g~~~Pf~~tf~~F~trA~dqvr~~-a~s~~~v~~v~th~~i~~GeDGPth~~iedlA~frsiPn~~v~~P 453 (632)
T KOG0523|consen 375 VGIANGIACRGRTIPFCGTFAAFFTRAFDQVRMG-ALSQANVIYVATHDSIGLGEDGPTHQPIEDLAMFRSIPNMIVFRP 453 (632)
T ss_pred HHhhhchhcCCCccchhHHHHHHHHHhhhheeeh-hhccCCcEEEEEeccccccCCCcccccHHHHHHHHhCCCceEEec
Confidence 999999999998 999999999999999999765 6677777777777766 8999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhhCCCCEEEEecCCCcccccCCCCCCCCccccccEE-EEEeCC-cEEEEEechhhHHHHHHHHHHH
Q 004946 534 SDEDELVDMVATVASIDDRPVCFRYPRGAIVRTDLPGYRGIPIEEIGKGK-VLVEGK-DVALLGYGAMVQNCLKARALLS 611 (722)
Q Consensus 534 sd~~E~~~~l~~a~~~~~~Pv~ir~~r~~~~~~~~p~~~~~~~~~igk~~-vl~eG~-dv~lva~Gs~v~~aleAa~~L~ 611 (722)
+|..|+..++..|++..+.|++++++|++.+..+ . ...+ ++||+. +++++. ||+||++|+++++|++||+.|+
T Consensus 454 aD~~et~~av~~Aa~~~~~p~i~~~~r~~~~~~~--~--~~~~-~igkg~~vl~~~~~dV~LiG~Gs~v~~cl~AA~~L~ 528 (632)
T KOG0523|consen 454 ADGNETENAVATAANTKGTPSIRTLSRQNLPIYN--N--TEIE-EIGKGKYVLQEVEPDVILIGTGSEVQECLEAAELLS 528 (632)
T ss_pred CchHHHHHHHHHHHhcCCCeeEEEecCccccccC--C--Cchh-hhccccEEEecCCCCEEEEeccHHHHHHHHHHHHHH
Confidence 9999999999999988888999999999865432 1 2334 899997 777776 9999999999999999999999
Q ss_pred hcCCcEEEeecCccccchHHHHHHHhcCCCeEEEE-cCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCH
Q 004946 612 KLGIDVTVADARFCKPLDIKLVRELCQNHTFLITV-EEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASP 689 (722)
Q Consensus 612 ~~Gi~v~Vidl~~lkPld~e~i~~~~~~~~~vvvv-Ee~~-~gG~gs~v~~~l~~~~~~~~~~~v~~ig~~d~f~~~g~~ 689 (722)
++||+++|+|++++||||..+|+++.+.++..++| |+++ .||++..+.... +.++. ..+..++ +|+|+.+|++
T Consensus 529 ~~gi~vrVvd~~~~kplD~~li~~~~q~~e~ri~v~ed~~~~gsi~~~~~a~~---g~~~~-~~~~~~~-~~~~~~sG~p 603 (632)
T KOG0523|consen 529 EDGIKVRVVDPFTWKPLDVALIRSLAQSHEYRISVLEDHVPAGSIEVAVTAAW---GKYPG-ILVPSLG-VDTFGRSGPP 603 (632)
T ss_pred hcCceEEEecccceeecchHHhhhhhcccceeEEEccCCCCCcchhheeeehh---cccCC-ccceeec-cccCCcCCCC
Confidence 99999999999999999999999999988855555 4555 356665544332 32322 2355666 5999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHhhcchhhh
Q 004946 690 TQQLALAGLTGHHIAATALSLLGRTREAL 718 (722)
Q Consensus 690 ~~l~~~~gl~~~~I~~~i~~ll~~~~~~~ 718 (722)
.++++.|||++++|+++++++++..|+++
T Consensus 604 ~ell~~fGit~~~Ia~~a~~~~~~~~~~~ 632 (632)
T KOG0523|consen 604 PELLKMFGITARHIAAAALSLIGKYREAL 632 (632)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhhccCC
Confidence 99999999999999999999999988875
No 10
>PTZ00089 transketolase; Provisional
Probab=100.00 E-value=2e-94 Score=839.30 Aligned_cols=535 Identities=19% Similarity=0.234 Sum_probs=454.3
Q ss_pred HHHHHHHHHHHHHHHhHh-cCCCCCCCcchHHHHHHHHhh-c--cCC------CCcEEEecCCchH---HHHHHHhCch-
Q 004946 98 ELKQLAVEIRSELSSIVS-KTEKSLKSSLAAVELTVALHH-V--FHA------PVDKILWDVGEQT---YAHKILTGRR- 163 (722)
Q Consensus 98 ~l~~la~eiR~~ii~~~~-~~gGh~~~slg~vel~~aL~~-v--f~~------p~D~iv~d~GH~~---y~h~~ltGr~- 163 (722)
..+++|+++|..+++++. .++||+|++||++|++++||+ + |++ ++|+||||+||++ |+|++++|++
T Consensus 5 ~~~~~a~~iR~~~~~~~~~a~~GH~g~~ls~~ei~~~L~~~~l~~~~~~~~~~~rDr~vls~GH~~~~lYa~l~l~G~~~ 84 (661)
T PTZ00089 5 IDEKCANEIRCLSADLVQKANSGHPGAPMGMAPIAHILWSEVMKYNPKDPRWINRDRFVLSNGHASALLYSMLHLTGYDL 84 (661)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHhhcCCCcCCCCCCCCEEEEeCcchHHHHHHHHHHcCCCC
Confidence 457789999999999996 578999999999999999996 5 553 5899999999999 9999999984
Q ss_pred --hhhhHHHhhCC-CCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCC----------CCeEEEEecCCCcccch
Q 004946 164 --SLIHTLRKKDG-ISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGK----------RECIVTVISNGTTMAGQ 230 (722)
Q Consensus 164 --~~~~~~r~~gg-l~g~~~~~es~~d~~~~G~~G~~ls~A~G~A~A~~l~~~----------~~~Vv~viGDGa~~~G~ 230 (722)
+++.++|+.++ ++|||++.+++++.+++||+|+++|.|+|||+|+++++. +++|||++|||++++|+
T Consensus 85 ~~~~l~~fr~~~s~~~ghp~~~~~~gv~~~tG~lG~gls~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~v~GDG~l~eG~ 164 (661)
T PTZ00089 85 SMEDLKNFRQLGSRTPGHPERHITPGVEVTTGPLGQGIANAVGLAIAEKHLAAKFNRPGHPIFDNYVYVICGDGCLQEGV 164 (661)
T ss_pred CHHHHHhcCCCCCCCCCCCCCCCCCCcccCCcchhhhHHHHHHHHHHHHHHhhhccCccccCcCCEEEEEECccchhhHH
Confidence 67888888886 679999989999999999999999999999999998754 78999999999999999
Q ss_pred HHHHHHHhhhcCC-CEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHH
Q 004946 231 AYEAMSNAGYLDS-NMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKV 309 (722)
Q Consensus 231 ~~EAln~A~~~~~-plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~ 309 (722)
+|||+|+|+.+++ |||+|+|||+++ ++.++....
T Consensus 165 ~~EAl~~A~~~~L~nLi~i~d~N~~~--------i~~~~~~~~------------------------------------- 199 (661)
T PTZ00089 165 SQEALSLAGHLGLEKLIVLYDDNKIT--------IDGNTDLSF------------------------------------- 199 (661)
T ss_pred HHHHHHHHHHhCCCCEEEEEECCCcc--------cccCccccc-------------------------------------
Confidence 9999999999995 699999999983 233332000
Q ss_pred HHHhhcccCCChhhhHhhcCceEEeecCCC-CHHHHHHHHHHHHhcCCCCCEEEEEEeeccCCCcccccccchhhccCCC
Q 004946 310 DEYARGMIGPQGSTLFEELGLYYIGPVDGH-NIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGA 388 (722)
Q Consensus 310 ~~~~~~~~~~~~~~lfea~G~~~~~~vdGh-d~~~l~~al~~a~~~~~~~P~lI~v~T~kG~G~~~ae~~~~~~~~H~~~ 388 (722)
..+...+|++|||+|+.++||| |+++|.++++++++. .++|++||++|.||+|+ ..| +..+|||.+
T Consensus 200 --------~~~~~~~f~a~G~~~i~v~dG~~D~~~l~~a~~~a~~~-~~~P~~I~~~T~kG~G~-~~e---~~~~~H~~~ 266 (661)
T PTZ00089 200 --------TEDVEKKYEAYGWHVIEVDNGNTDFDGLRKAIEEAKKS-KGKPKLIIVKTTIGYGS-SKA---GTEKVHGAP 266 (661)
T ss_pred --------CccHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHHHHhc-CCCcEEEEEEeeecCCC-CcC---CCCCccCCC
Confidence 0112458999999999767999 999999999999874 36899999999999994 444 478999886
Q ss_pred CC---------------CC------------------CCCC---------------------------------------
Q 004946 389 SD---------------SN------------------SLPF--------------------------------------- 396 (722)
Q Consensus 389 ~~---------------~t------------------g~~~--------------------------------------- 396 (722)
+. .+ +...
T Consensus 267 ~~~~~~~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 346 (661)
T PTZ00089 267 LGDEDIAQVKELFGLDPEKKFHVSEEVRQFFEQHVEKKKENYEAWKKRFAKYTAAFPKEAQAIERRFKGELPPGWEKKLP 346 (661)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHCHHHHHHHHHHhccCCchhhhhhhh
Confidence 30 00 0000
Q ss_pred --C--CCccchHHHHHHHHHHHHhcCCCEEEEecCCCCccch-----HHHHHhCC-CceeecccchHHHHHHHHHHhc-C
Q 004946 397 --G--NYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL-----QLFQEKFP-ERYFDVGMAEQHAVTFSAGLAC-G 465 (722)
Q Consensus 397 --~--~~~~s~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~l-----~~f~~~~p-~R~~d~GIaE~~av~~AaGlA~-~ 465 (722)
. .+..+.+++++++|.++++.+|++++.++|+..|+.+ ..|+++|| +||||+|||||+|+++|+|||+ .
T Consensus 347 ~~~~~~~~~a~R~~~g~~L~~la~~~~~~~~~saDl~~s~~~~~~~~~~f~~~~P~~rfi~~GIaEq~mv~~AaGlA~~~ 426 (661)
T PTZ00089 347 KYTTNDKAIATRKASENVLNPLFQILPELIGGSADLTPSNLTRPKEANDFTKASPEGRYIRFGVREHAMCAIMNGIAAHG 426 (661)
T ss_pred hhcccCcchHHHHHHHHHHHHHHhhCCCeEEEECCCCcccCcCCcccccccccCCCCCeeeeeecHHHHHHHHHHHHHcC
Confidence 0 0122467788888899999999999999999887754 47999999 8999999999999999999999 8
Q ss_pred CCeeEEEecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCc-cCCCCCCcCcHHHHHHhcCCCCcEEEeeCCHHHHHHHHH
Q 004946 466 GLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVA 544 (722)
Q Consensus 466 G~~p~~~t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~ 544 (722)
|++||++||++|++|++||| ++.|++++||+|++++.|+ +|+||+|||+++|+++||+||||+|++|+|+.|+..+++
T Consensus 427 G~~P~~~tf~~Fl~Ra~dqi-r~~al~~lpV~~v~thdg~~~g~DG~THq~iedia~lR~iPn~~V~~PaD~~E~~~~l~ 505 (661)
T PTZ00089 427 GFIPFGATFLNFYGYALGAV-RLAALSHHPVIYVATHDSIGLGEDGPTHQPVETLALLRATPNLLVIRPADGTETSGAYA 505 (661)
T ss_pred CCeEEEEehHHHHHHHHHHH-HHHHhcCCCeEEEEeCCceecCCCCCCcccHHHHHHHhcCCCcEEEecCCHHHHHHHHH
Confidence 99999999999999999995 7789999999999988887 899999999999999999999999999999999999999
Q ss_pred HHhhhCCCCEEEEecCCCcccccCCCCCCCCccccccEEEEEeC---CcEEEEEechhhHHHHHHHHHHHhcCCcEEEee
Q 004946 545 TVASIDDRPVCFRYPRGAIVRTDLPGYRGIPIEEIGKGKVLVEG---KDVALLGYGAMVQNCLKARALLSKLGIDVTVAD 621 (722)
Q Consensus 545 ~a~~~~~~Pv~ir~~r~~~~~~~~p~~~~~~~~~igk~~vl~eG---~dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vid 621 (722)
+|+...++|+|||++|+..+.. +.. ...+ ..+++++++++ +|++||++|+++..|++|++.|++ ||+++|||
T Consensus 506 ~al~~~~gP~~irl~R~~~~~~--~~~-~~~~-~~~g~~vl~~~~~~~dv~iia~G~~v~~Al~Aa~~L~~-Gi~~~Vv~ 580 (661)
T PTZ00089 506 LALANAKTPTILCLSRQNTPPL--PGS-SIEG-VLKGAYIVVDFTNSPQLILVASGSEVSLCVEAAKALSK-ELNVRVVS 580 (661)
T ss_pred HHHHcCCCCEEEEecCCCCCCc--CCC-cccc-ccCceEEEeccCCCCCEEEEeeCHHHHHHHHHHHHHhc-CCCeEEEe
Confidence 9996678999999999975432 211 2233 34556788875 799999999999999999999999 99999999
Q ss_pred cCccccchHHHHHHH---hc-CCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcC
Q 004946 622 ARFCKPLDIKLVREL---CQ-NHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAG 697 (722)
Q Consensus 622 l~~lkPld~e~i~~~---~~-~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~v~~ig~~d~f~~~g~~~~l~~~~g 697 (722)
++|++|||++.+... +. ++..++++|++...||.. + ..+++|+++ |+.+|+.+++++++|
T Consensus 581 ~~~ikp~d~~~~~~~~~v~~e~~~~~vtiE~~~~~g~~~----------~-----~~~~igv~~-Fg~sg~~~~l~~~~G 644 (661)
T PTZ00089 581 MPCWELFDQQSEEYQQSVLPSGGVPVLSVEAYVSFGWEK----------Y-----SHVHVGISG-FGASAPANALYKHFG 644 (661)
T ss_pred CCCccHHHHHHHHHHHHhcCCCCCceEeHHhhHHHHHHh----------c-----CCeEEECCC-ccccCCHHHHHHHhC
Confidence 999999999987543 44 455789999998655431 0 114789988 999999999999999
Q ss_pred CCHHHHHHHHHHHhh
Q 004946 698 LTGHHIAATALSLLG 712 (722)
Q Consensus 698 l~~~~I~~~i~~ll~ 712 (722)
||+++|+++|++++.
T Consensus 645 l~~e~I~~~i~~~l~ 659 (661)
T PTZ00089 645 FTVENVVEKARALAA 659 (661)
T ss_pred CCHHHHHHHHHHHhh
Confidence 999999999998864
No 11
>PLN02790 transketolase
Probab=100.00 E-value=1.2e-93 Score=831.98 Aligned_cols=531 Identities=20% Similarity=0.250 Sum_probs=452.5
Q ss_pred HHHHHHHhHh-cCCCCCCCcchHHHHHHHHhhc---cCC------CCcEEEecCCchH---HHHHHHhCch----hhhhH
Q 004946 106 IRSELSSIVS-KTEKSLKSSLAAVELTVALHHV---FHA------PVDKILWDVGEQT---YAHKILTGRR----SLIHT 168 (722)
Q Consensus 106 iR~~ii~~~~-~~gGh~~~slg~vel~~aL~~v---f~~------p~D~iv~d~GH~~---y~h~~ltGr~----~~~~~ 168 (722)
||..+++++. .++||+|++||++|++++||+. |++ ++|+||||+||++ |+|++++|+. +++.+
T Consensus 1 iR~~~~~~~~~a~~GH~g~~ls~~ei~~~L~~~~~~~~~~~p~~~~rDrfvls~GH~~~~lYa~l~~~G~~~~~~~~l~~ 80 (654)
T PLN02790 1 IRFLAIDAVNKANSGHPGLPMGCAPMGHVLYDEVMKYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQMEDLKQ 80 (654)
T ss_pred ChHHHHHHHHhcCCCcCCchhhHHHHHHHHHHhhcccCCCCCCCCCCCEEEEeCcchHHHHHHHHHHcCCCCCCHHHHHH
Confidence 6899999996 5789999999999999999976 663 5899999999999 9999999996 78999
Q ss_pred HHhhCC-CCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHc-----CC-----CCeEEEEecCCCcccchHHHHHHH
Q 004946 169 LRKKDG-ISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIK-----GK-----RECIVTVISNGTTMAGQAYEAMSN 237 (722)
Q Consensus 169 ~r~~gg-l~g~~~~~es~~d~~~~G~~G~~ls~A~G~A~A~~l~-----~~-----~~~Vv~viGDGa~~~G~~~EAln~ 237 (722)
+||.++ +.|||++.+++++.+++||+|+++|+|+|||+|.+++ ++ +++|+|++|||++++|++|||+|+
T Consensus 81 ~r~~~s~~~ghp~~~~~pgi~~~tG~lG~gl~~A~G~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~ 160 (654)
T PLN02790 81 FRQWGSRTPGHPENFETPGIEVTTGPLGQGIANAVGLALAEKHLAARFNKPDHKIVDHYTYCILGDGCQMEGISNEAASL 160 (654)
T ss_pred hccCCCCCCCCCCCCCCCCccccCCchhchHHHHHHHHHHHHHHHHHhCCCcccccCCEEEEEECcCcccchHHHHHHHH
Confidence 999998 4599999999999999999999999999999999953 43 689999999999999999999999
Q ss_pred hhhcCC-CEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcc
Q 004946 238 AGYLDS-NMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM 316 (722)
Q Consensus 238 A~~~~~-plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~ 316 (722)
|+.+++ ||++|+|||+++ ++.+++... .
T Consensus 161 A~~~~L~nli~i~d~N~~~--------i~~~~~~~~-----------------------------~-------------- 189 (654)
T PLN02790 161 AGHWGLGKLIVLYDDNHIS--------IDGDTEIAF-----------------------------T-------------- 189 (654)
T ss_pred HHHhCCCCEEEEEecCCcc--------ccCCccccc-----------------------------c--------------
Confidence 999996 599999999983 333443110 0
Q ss_pred cCCChhhhHhhcCceEEeecCC-CCHHHHHHHHHHHHhcCCCCCEEEEEEeeccCCCcccccccchhhccCCCC------
Q 004946 317 IGPQGSTLFEELGLYYIGPVDG-HNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGAS------ 389 (722)
Q Consensus 317 ~~~~~~~lfea~G~~~~~~vdG-hd~~~l~~al~~a~~~~~~~P~lI~v~T~kG~G~~~ae~~~~~~~~H~~~~------ 389 (722)
.+...+|++|||+++.+.+| ||++++.++++++++. .++|++||++|.||+|+++.|+ ..+||+.++
T Consensus 190 --~~~~~~f~a~G~~~~~vdgg~hd~~~l~~a~~~a~~~-~~~P~lI~~~T~kG~G~~~~e~---~~~~H~~~~~~~~~~ 263 (654)
T PLN02790 190 --EDVDKRYEALGWHTIWVKNGNTDYDEIRAAIKEAKAV-TDKPTLIKVTTTIGYGSPNKAN---SYSVHGAALGEKEVD 263 (654)
T ss_pred --hhHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhc-CCCeEEEEEEEeecCCCccccC---CCCcCCCCCCHHHHH
Confidence 01145799999999965455 8999999999999863 4789999999999999998765 889999873
Q ss_pred ---------------CCCC-----------CC---------------C----------------------------CCCc
Q 004946 390 ---------------DSNS-----------LP---------------F----------------------------GNYS 400 (722)
Q Consensus 390 ---------------~~tg-----------~~---------------~----------------------------~~~~ 400 (722)
+++. .. . +.+.
T Consensus 264 ~~~~~l~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (654)
T PLN02790 264 ATRKNLGWPYEPFHVPEDVKSHWSKHTKEGAALEAEWNAKFAEYKKKYPEEAAELKSLISGELPSGWEKALPTFTPEDPA 343 (654)
T ss_pred HHHHHhCCCCCCCcCCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhCHHHHHHHHHHhccCCchhhhhhhhhhcccCcc
Confidence 0000 00 0 0001
Q ss_pred cchHHHHHHHHHHHHhcCCCEEEEecCCCCccc-----hHHHHHh-CCCceeecccchHHHHHHHHHHhcC--CCeeEEE
Q 004946 401 RTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLS-----LQLFQEK-FPERYFDVGMAEQHAVTFSAGLACG--GLKPFCI 472 (722)
Q Consensus 401 ~s~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~-----l~~f~~~-~p~R~~d~GIaE~~av~~AaGlA~~--G~~p~~~ 472 (722)
.+.++++++.|.++++.+|++++.++|+.+++. +..|+++ ||+||||+|||||+|+++|+|||+. |++||++
T Consensus 344 ~a~R~~~~~~l~~i~~~~p~iv~gsaDl~~s~~t~~~~~~~f~~~~~p~Rfi~~GIaEq~mv~~AaGlA~~G~G~~P~~~ 423 (654)
T PLN02790 344 DATRNLSQKCLNALAKVLPGLIGGSADLASSNMTLLKDFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSSGLIPYCA 423 (654)
T ss_pred hHHHHHHHHHHHHHHhhCCCeEEEECCCCcccccccccchhhhhcCCCCCeEEeeechHHHHHHHHHHHhcCCCcEEEEE
Confidence 345677888999999999999999999988764 6899988 5999999999999999999999995 6999999
Q ss_pred ecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCc-cCCCCCCcCcHHHHHHhcCCCCcEEEeeCCHHHHHHHHHHHhhhCC
Q 004946 473 IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDD 551 (722)
Q Consensus 473 t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~~~ 551 (722)
||+.|+.|+++|+ +++|++++||+|++++.|+ +|+||+|||+++|+++||+|||++|++|+|++|+..++++|+...+
T Consensus 424 tf~~F~~~~~~~i-r~~al~~lpV~~v~thdg~~~G~DG~THq~iedla~lR~iPnl~V~~PaD~~E~~~~l~~al~~~~ 502 (654)
T PLN02790 424 TFFVFTDYMRAAM-RLSALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLASLRAMPNILMLRPADGNETAGAYKVAVTNRK 502 (654)
T ss_pred ecHHHHHHHHHHH-HHHHhcCCCeEEEEECCceeecCCCCCcccHHHHHHhcCCCCcEEEeCCCHHHHHHHHHHHHHcCC
Confidence 9999999999987 6779999999999988777 7999999999999999999999999999999999999999987668
Q ss_pred CCEEEEecCCCcccccCCCCCCCCccccccEEEEEeC-----CcEEEEEechhhHHHHHHHHHHHhcCCcEEEeecCccc
Q 004946 552 RPVCFRYPRGAIVRTDLPGYRGIPIEEIGKGKVLVEG-----KDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCK 626 (722)
Q Consensus 552 ~Pv~ir~~r~~~~~~~~p~~~~~~~~~igk~~vl~eG-----~dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lk 626 (722)
+|++||++|+..+.. +......+ ++|+ ++++++ +|++||++|++++.|++|++.|+++||+++|||++|++
T Consensus 503 gP~~irl~R~~~~~~--~~~~~~~~-~~G~-~vl~~~~~~~~~dv~iia~G~~v~~Al~Aa~~L~~~gi~~~VV~~~~ik 578 (654)
T PLN02790 503 RPTVLALSRQKVPNL--PGTSIEGV-EKGG-YVISDNSSGNKPDLILIGTGSELEIAAKAAKELRKEGKKVRVVSMVCWE 578 (654)
T ss_pred CCEEEEecCCCCCCC--CCCccccc-ccCc-EEEEeCCCCCCCCEEEEEcCHHHHHHHHHHHHHHhcCCceEEEecCccc
Confidence 999999999974332 11112345 6676 666774 79999999999999999999999999999999999999
Q ss_pred cchHHHHH---HHh-cCCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHH
Q 004946 627 PLDIKLVR---ELC-QNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHH 702 (722)
Q Consensus 627 Pld~e~i~---~~~-~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~v~~ig~~d~f~~~g~~~~l~~~~gl~~~~ 702 (722)
|||++... +++ ++++.+||+|++..+||++. + ..+.+++|+ |+|+.+|+.+++++++|||+++
T Consensus 579 pld~~~~~y~~~~~~~~~~~vvtiE~~~~~G~~~~----~--------~~~~~~igv-d~Fg~sg~~~~l~~~~Glt~e~ 645 (654)
T PLN02790 579 LFEEQSDEYKESVLPSSVTARVSVEAGSTFGWEKY----V--------GSKGKVIGV-DRFGASAPAGILYKEFGFTVEN 645 (654)
T ss_pred hhhhhHHHHHHhhhccccceEEEecCccchhHHHh----c--------CCCceEEEe-CCCcCcCCHHHHHHHhCCCHHH
Confidence 99998754 666 67778999999998888742 1 123467898 9999999999999999999999
Q ss_pred HHHHHHHHh
Q 004946 703 IAATALSLL 711 (722)
Q Consensus 703 I~~~i~~ll 711 (722)
|+++|++++
T Consensus 646 I~~~i~~~~ 654 (654)
T PLN02790 646 VVAAAKSLL 654 (654)
T ss_pred HHHHHHHhC
Confidence 999998754
No 12
>PRK12753 transketolase; Reviewed
Probab=100.00 E-value=9.1e-93 Score=823.72 Aligned_cols=537 Identities=19% Similarity=0.214 Sum_probs=452.8
Q ss_pred HHHHHHHHHHHHHhHhc-CCCCCCCcchHHHHHHHHhhcc-C--------CCCcEEEecCCchH---HHHHHHhCch---
Q 004946 100 KQLAVEIRSELSSIVSK-TEKSLKSSLAAVELTVALHHVF-H--------APVDKILWDVGEQT---YAHKILTGRR--- 163 (722)
Q Consensus 100 ~~la~eiR~~ii~~~~~-~gGh~~~slg~vel~~aL~~vf-~--------~p~D~iv~d~GH~~---y~h~~ltGr~--- 163 (722)
+++|.+||..+++++.+ ++||+|+++|+++++.+||+.| + .++|+||+|+||++ |++++++|+.
T Consensus 5 ~~~a~~iR~~~~~~~~~a~~GH~g~~ls~~~i~~~Ly~~~l~~~p~~p~~~~rDrfvls~GH~~~~lYa~l~~~G~~~~~ 84 (663)
T PRK12753 5 KDLANAIRALSMDAVQKANSGHPGAPMGMADIAEVLWRDFLKHNPTNPTWYDRDRFILSNGHASMLLYSLLHLTGYDLPI 84 (663)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHhCCCccCCCCCCCCcEEEecccHHHHHHHHHHHhCCCCCH
Confidence 57799999999999996 7899999999999999999643 2 13799999999999 9999999974
Q ss_pred hhhhHHHhhCC-CCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCC----------CCeEEEEecCCCcccchHH
Q 004946 164 SLIHTLRKKDG-ISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGK----------RECIVTVISNGTTMAGQAY 232 (722)
Q Consensus 164 ~~~~~~r~~gg-l~g~~~~~es~~d~~~~G~~G~~ls~A~G~A~A~~l~~~----------~~~Vv~viGDGa~~~G~~~ 232 (722)
++|.++|++++ +.|||.....+..++++|++|+++|+|+|||+|.++++. +++|+|++|||+++||++|
T Consensus 85 e~L~~fr~~~s~~~ghp~~~~~pgve~~tG~lG~gl~~AvG~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~ 164 (663)
T PRK12753 85 EELKNFRQLHSKTPGHPEIGYTPGVETTTGPLGQGLANAVGLAIAERTLAAQFNRPGHEIVDHYTYVFMGDGCLMEGISH 164 (663)
T ss_pred HHHHHhccCCCCCCCCCCCCCCCCcccCCCcccccHHHHHHHHHHHHHhhhhcCCccccccCCEEEEEECcCccccHHHH
Confidence 78999999997 789998877888888999999999999999999998753 6899999999999999999
Q ss_pred HHHHHhhhcCC-CEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHH
Q 004946 233 EAMSNAGYLDS-NMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDE 311 (722)
Q Consensus 233 EAln~A~~~~~-plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~ 311 (722)
||+|+|+++++ ||++|+|||+++ ++.++... +
T Consensus 165 EA~~~A~~~kL~nLi~ivd~N~~~--------i~~~~~~~---~------------------------------------ 197 (663)
T PRK12753 165 EVCSLAGTLGLGKLIGFYDHNGIS--------IDGETEGW---F------------------------------------ 197 (663)
T ss_pred HHHHHHHHHCCCCEEEEEECCCCc--------CCCChhhh---c------------------------------------
Confidence 99999999996 599999999983 23333211 0
Q ss_pred HhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEEEEEeeccCCCcccccccchhhccCCCC--
Q 004946 312 YARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGAS-- 389 (722)
Q Consensus 312 ~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kG~G~~~ae~~~~~~~~H~~~~-- 389 (722)
..+...+|++|||+++.++||||+++|.++++++++. .++|++|+++|.||+|++++|+ ..+|||.++
T Consensus 198 ------~~~~~~~f~a~Gw~~~~~vDGhD~~~i~~a~~~a~~~-~~~P~~I~~~T~kG~G~~~~e~---~~~~H~~~l~~ 267 (663)
T PRK12753 198 ------TDDTAKRFEAYHWHVIHEIDGHDPQAIKEAILEAQSV-KDKPSLIICRTIIGFGSPNKAG---KEESHGAPLGE 267 (663)
T ss_pred ------ChhHHHHHHHcCCeEEceeCCCCHHHHHHHHHHHHHC-CCCeEEEEEEEeecCCCCcccC---CCCccCCCCCH
Confidence 0112468999999999778999999999999998863 4789999999999999999875 789998643
Q ss_pred -------------------C----------CCCCC------------------------------CC-------------
Q 004946 390 -------------------D----------SNSLP------------------------------FG------------- 397 (722)
Q Consensus 390 -------------------~----------~tg~~------------------------------~~------------- 397 (722)
+ .+|.+ .+
T Consensus 268 ~~~~~~~~~l~~~~~~F~v~~~v~~~~~~~~~~~~~~~~w~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 347 (663)
T PRK12753 268 EEVALTRQKLGWHHPPFEIPKEIYAAWDAREKGEKAEQAWNEKFAAYKKAYPELAAEFTRRMSGGLPKDWEKKTQKYINE 347 (663)
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHhhhhchHHHHHHHHHHHHHHHHCHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 0 11110 00
Q ss_pred ----CCccchHHHHHHHHHHHHhcCCCEEEEecCCCCccch-----HHHHHhCCCceeecccchHHHHHHHHHHhc-CCC
Q 004946 398 ----NYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL-----QLFQEKFPERYFDVGMAEQHAVTFSAGLAC-GGL 467 (722)
Q Consensus 398 ----~~~~s~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~l-----~~f~~~~p~R~~d~GIaE~~av~~AaGlA~-~G~ 467 (722)
......+++++++|.++++.+|+++++++|+.+++.+ ..|.++||+||||+||+||+|+++|+|||+ .|+
T Consensus 348 ~~~~~~~~a~r~~~g~~L~~l~~~~p~lv~~sADl~~S~~~~~~~~~~f~~~~p~r~i~~GIaEq~mv~~aaGlA~~~G~ 427 (663)
T PRK12753 348 LQANPAKIATRKASQNTLEAYGPLLPELLGGSADLAPSNLTIWSGSKSLKEDPAGNYIHYGVREFGMTAIANGIAHHGGF 427 (663)
T ss_pred hhccccccHHHHHHHHHHHHHHhhCCCeEEEccccccccCcccccccchhhcCCCCEEEeeecHHHHHHHHHHHHHhCCC
Confidence 1123466788999999999999999999999988866 789999999999999999999999999999 799
Q ss_pred eeEEEecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCc-cCCCCCCcCcHHHHHHhcCCCCcEEEeeCCHHHHHHHHHHH
Q 004946 468 KPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATV 546 (722)
Q Consensus 468 ~p~~~t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~a 546 (722)
+||++||++|++|++|||+. .|++++||+++++++|+ +|+||+|||+++|+++||.+|||+|++|+|+.|+..+++.|
T Consensus 428 ~P~~~tf~~F~~r~~~qir~-~a~~~l~V~~v~thdg~~~G~DG~THq~iedla~lR~iPn~~v~~PaD~~E~~~~~~~a 506 (663)
T PRK12753 428 VPYTATFLMFVEYARNAARM-AALMKARQIMVYTHDSIGLGEDGPTHQPVEQLASLRLTPNFSTWRPCDQVEAAVAWKLA 506 (663)
T ss_pred eEEEEehHHHHHHHHHHHHH-HHhcCCCeEEEEeCCCcccCCCCcccccHHHHHHHhcCCCCEEEccCCHHHHHHHHHHH
Confidence 99999999999999999985 59999999999999998 89999999999999999999999999999999999999999
Q ss_pred hhhCCCCEEEEecCCCcccccCCCCC--CCCccccccEEEEEeCC---cEEEEEechhhHHHHHHHHHHHhcCCcEEEee
Q 004946 547 ASIDDRPVCFRYPRGAIVRTDLPGYR--GIPIEEIGKGKVLVEGK---DVALLGYGAMVQNCLKARALLSKLGIDVTVAD 621 (722)
Q Consensus 547 ~~~~~~Pv~ir~~r~~~~~~~~p~~~--~~~~~~igk~~vl~eG~---dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vid 621 (722)
++..++|+|||++|+..+.. .... ...+ ..|+ +++++|. |++||++|+++++|++|++.|+++||+++|||
T Consensus 507 l~~~~gP~~irl~R~~~~~~--~~~~~~~~~~-~~G~-~vl~~~~~~~dv~iia~Gs~v~~al~Aa~~L~~~gi~~~Vv~ 582 (663)
T PRK12753 507 IERHNGPTALILSRQNLAQQ--ERTPEQVKNI-ARGG-YILKDSGGKPDLILIATGSEVEITLQAAEKLTAEGRNVRVVS 582 (663)
T ss_pred HhcCCCCEEEEecCCCCCCC--CCcccchhhc-cCCc-EEEeccCCCCCEEEEEeCHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 97568999999999975432 1111 1123 3343 7888864 99999999999999999999999999999999
Q ss_pred cCccccchHHHH--HH-HhcC-CCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcC
Q 004946 622 ARFCKPLDIKLV--RE-LCQN-HTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAG 697 (722)
Q Consensus 622 l~~lkPld~e~i--~~-~~~~-~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~v~~ig~~d~f~~~g~~~~l~~~~g 697 (722)
++|++|||++.+ ++ ++.. ....|+||++.. ..+.++. +.+.+++|+ |+|+.+|+.+++++++|
T Consensus 583 ~~~~kp~d~~~~~y~~~vl~~~~~~~vtvE~~~~----~~~~~~~--------~~~~~~iGv-d~Fg~sg~~~~l~~~~G 649 (663)
T PRK12753 583 MPSTDIFDAQDEAYRESVLPSNVTARVAVEAGIA----DYWYKYV--------GLKGAIIGM-TGFGESAPADKLFPFFG 649 (663)
T ss_pred CCcCCccchhHHHHHHhhcccccceEEEEccChH----HHHHHHc--------CCCCeEEEe-CCCcCcCCHHHHHHHhC
Confidence 999999999986 22 2222 223489999842 2222221 235678998 89999999999999999
Q ss_pred CCHHHHHHHHHHHh
Q 004946 698 LTGHHIAATALSLL 711 (722)
Q Consensus 698 l~~~~I~~~i~~ll 711 (722)
||+++|++++++++
T Consensus 650 lt~~~Iv~~i~~~~ 663 (663)
T PRK12753 650 FTVENIVAKAKKLL 663 (663)
T ss_pred CCHHHHHHHHHHhC
Confidence 99999999998763
No 13
>PRK05899 transketolase; Reviewed
Probab=100.00 E-value=6e-92 Score=819.12 Aligned_cols=541 Identities=23% Similarity=0.279 Sum_probs=467.0
Q ss_pred CCHHHHHHHHHHHHHHHHHhHh-cCCCCCCCcchHHHHHHHHhh-ccC--------CCCcEEEecCCchH---HHHHHHh
Q 004946 94 LTIKELKQLAVEIRSELSSIVS-KTEKSLKSSLAAVELTVALHH-VFH--------APVDKILWDVGEQT---YAHKILT 160 (722)
Q Consensus 94 l~~~~l~~la~eiR~~ii~~~~-~~gGh~~~slg~vel~~aL~~-vf~--------~p~D~iv~d~GH~~---y~h~~lt 160 (722)
+.+++|+++|+++|+.+++++. ..+||+|+++|++|++++||+ +|+ .++|+||||+||++ |++++++
T Consensus 3 ~~~~~l~~~a~~iR~~~~~~~~~~~~gH~g~~ls~~~i~~~L~~~~l~~~~~~~~~~~~Dr~i~s~GH~~~~~Ya~l~~~ 82 (624)
T PRK05899 3 MDMELLQLLANAIRVLSIDAVQKANSGHPGMPMGAADIAYVLWTRFLRHDPKNPKWPNRDRFVLSAGHGSMLLYSLLHLA 82 (624)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHcCCCCccchHHHHHHHHHHHHHhhcCCCCCCCCCCCCEEEEEChhHHHHHHHHHHHc
Confidence 5678999999999999999996 578999999999999999997 544 24799999999999 9999999
Q ss_pred Cc---hhhhhHHHhhCC-CCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCC----------CCeEEEEecCCCc
Q 004946 161 GR---RSLIHTLRKKDG-ISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGK----------RECIVTVISNGTT 226 (722)
Q Consensus 161 Gr---~~~~~~~r~~gg-l~g~~~~~es~~d~~~~G~~G~~ls~A~G~A~A~~l~~~----------~~~Vv~viGDGa~ 226 (722)
|+ ++++.++|++++ +.+||++.+++++.+++|++|+++|+|+|+|+|.++++. +++|||++|||++
T Consensus 83 G~~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~~~~G~lG~gl~~AiG~Ala~~~~~~~~~~~~~~~~~~~v~~v~GDG~~ 162 (624)
T PRK05899 83 GYDLSIDDLKNFRQLGSKTPGHPEYGHTPGVETTTGPLGQGLANAVGMALAEKYLAALFNRPGLDIVDHYTYVLCGDGDL 162 (624)
T ss_pred CCCCCHHHHHHhcCCCCCCCCCCCCCCCCCeeeCCcchhhhHHHHHHHHHHHHHhhhhcCCccccCcCCeEEEEECcchh
Confidence 99 889999999998 699999888899999999999999999999999998877 8999999999999
Q ss_pred ccchHHHHHHHhhhcCC-CEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHH
Q 004946 227 MAGQAYEAMSNAGYLDS-NMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEW 305 (722)
Q Consensus 227 ~~G~~~EAln~A~~~~~-plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~ 305 (722)
++|++||||++|+.+++ |+++|+|||+++ + +.++..+
T Consensus 163 ~~g~~~Eal~~A~~~~L~~li~v~dnN~~~-~-------~~~~~~~---------------------------------- 200 (624)
T PRK05899 163 MEGISHEACSLAGHLKLGNLIVIYDDNRIS-I-------DGPTEGW---------------------------------- 200 (624)
T ss_pred hchHHHHHHHHHHHhCCCCEEEEEECCCCc-c-------ccccccc----------------------------------
Confidence 99999999999999996 599999999983 1 1111100
Q ss_pred HHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEEEEEeeccCCCcccccccchhhcc
Q 004946 306 AAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQ 385 (722)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kG~G~~~ae~~~~~~~~H 385 (722)
..++...+|++|||+++ .|||||+++|.++++++++ .++|++|+++|.||+|++++|+ ..+||
T Consensus 201 -----------~~~~~~~~~~a~G~~~~-~VdG~d~~~l~~al~~a~~--~~~P~vI~v~t~kg~g~~~~e~---~~~~H 263 (624)
T PRK05899 201 -----------FTEDVKKRFEAYGWHVI-EVDGHDVEAIDAAIEEAKA--STKPTLIIAKTIIGKGAPNKEG---THKVH 263 (624)
T ss_pred -----------ccccHHHHhccCCCeEE-EECCCCHHHHHHHHHHHHh--cCCCEEEEEEeEeccCCccccC---CCccc
Confidence 01123568999999999 5999999999999999987 4789999999999999999886 67899
Q ss_pred CCCCCC---------CC---CC--CC--------------------------CCccchHHHHHHHHHHHHhcCCCEEEEe
Q 004946 386 EGASDS---------NS---LP--FG--------------------------NYSRTYDDCFIEALVMEAEKDKDIVVVH 425 (722)
Q Consensus 386 ~~~~~~---------tg---~~--~~--------------------------~~~~s~~~a~~~~L~~~~~~d~~iv~i~ 425 (722)
+.++.. -+ .+ .+ ....+++++|+++|.+++++||++++++
T Consensus 264 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~l~~~~~~v~vl~ 343 (624)
T PRK05899 264 GAPLGAEEIAAAKKELGWDYEPFEVPEEVYAHWRKAKERGAKAEAEWNEKFAGEKVATRKASGKALNALAKALPELVGGS 343 (624)
T ss_pred CCCCCHHHHHHHHHHcCCCcccccCChHHHHHHHHhhhcCchhHHHHHHhhcccchHHHHHHHHHHHHHHhhCCCEEEEe
Confidence 876510 00 00 00 0112458999999999999999999999
Q ss_pred cCCCCccchHHHH------HhCCCceeecccchHHHHHHHHHHhcCC-CeeEEEecHhhHHHHHHHHHHHHhcCCCCEEE
Q 004946 426 AGMEMDLSLQLFQ------EKFPERYFDVGMAEQHAVTFSAGLACGG-LKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRF 498 (722)
Q Consensus 426 ad~~~~~~l~~f~------~~~p~R~~d~GIaE~~av~~AaGlA~~G-~~p~~~t~~~Fl~ra~dqi~~~~a~~~lpVv~ 498 (722)
+|+++++++..|. ++||+||||+||+|++|+++|+|||+.| ++||+++|++|++|++||+.+. +++++||++
T Consensus 344 ~D~~~~~~~~~~~~~~f~~~~~p~R~~d~GIaE~~~vg~A~GlA~~G~~~pv~~t~~~F~~r~~~qir~~-~~~~~pv~~ 422 (624)
T PRK05899 344 ADLAGSNNTKIKGSKDFAPEDYSGRYIHYGVREFAMAAIANGLALHGGFIPFGGTFLVFSDYARNAIRLA-ALMKLPVIY 422 (624)
T ss_pred CCCccccCcccccccccCccCCCCCeeeeChhHHHHHHHHHHHHHcCCCeEEEEEcHHHHHHHHHHHHHH-HhcCCCEEE
Confidence 9999888887776 6899999999999999999999999999 9999999999999999999875 999999999
Q ss_pred EEeCCCc-cCCCCCCcCcHHHHHHhcCCCCcEEEeeCCHHHHHHHHHHHhhhCCCCEEEEecCCCcccccCCCC-CCCCc
Q 004946 499 VITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRYPRGAIVRTDLPGY-RGIPI 576 (722)
Q Consensus 499 v~~~~G~-~G~dG~TH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~~~~Pv~ir~~r~~~~~~~~p~~-~~~~~ 576 (722)
+.+++|+ +|.+|+|||+.+|+++||++|||+|++|+|++|++.+++++++..++|+|||++|+..+. +... ....+
T Consensus 423 v~~~~G~~~g~~G~tHq~~edia~~r~iP~~~V~~P~d~~e~~~~l~~a~~~~~~P~~ir~~r~~~~~--~~~~~~~~~~ 500 (624)
T PRK05899 423 VFTHDSIGVGEDGPTHQPVEQLASLRAIPNLTVIRPADANETAAAWKYALERKDGPSALVLTRQNLPV--LERTAQEEGV 500 (624)
T ss_pred EEECCCcCcCCCCCCcccHHHHHHHHhCCCcEEEeCCCHHHHHHHHHHHHHcCCCCEEEEEeCCCCCC--cCCccccccc
Confidence 9999998 788999999999999999999999999999999999999999754899999999976432 1111 12345
Q ss_pred cccccEEEEEeCCcEEEEEechhhHHHHHHHHHHHhcCCcEEEeecCccccchHHH---HHHHh-cCCCeEEEEcCCCCC
Q 004946 577 EEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKL---VRELC-QNHTFLITVEEGSIG 652 (722)
Q Consensus 577 ~~igk~~vl~eG~dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~---i~~~~-~~~~~vvvvEe~~~g 652 (722)
++|+ +++++|+|++||++|+++++|++|++.|+++||+++|||++|++|||++. +...+ ..+..+|++|++..+
T Consensus 501 -~~G~-~~l~~G~dvtiia~G~~v~~al~Aa~~L~~~gi~~~VId~~sikPlD~~e~h~~~~~lg~~~~~~v~~e~~~~~ 578 (624)
T PRK05899 501 -AKGG-YVLRDDPDVILIATGSEVHLALEAADELEAEGIKVRVVSMPSTELFDEQDAAYKESVLPAAVTARVAVEAGVAD 578 (624)
T ss_pred -cCCc-EEEecCCCEEEEEeCHHHHHHHHHHHHHHhcCCcEEEEECCCcchhccCcHHHHhccccccccceEEEccCCcc
Confidence 6776 78899999999999999999999999999999999999999999999983 55555 455678889988777
Q ss_pred ChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHh
Q 004946 653 GFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLL 711 (722)
Q Consensus 653 G~gs~v~~~l~~~~~~~~~~~v~~ig~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~ll 711 (722)
||. .++ +.+++++|++| |+++|+++++++++|||+++|+++|++++
T Consensus 579 g~~----~~~--------~~~~~~iGv~~-f~~~g~~~~l~~~~gl~~~~I~~~i~~~~ 624 (624)
T PRK05899 579 GWY----KYV--------GLDGKVLGIDT-FGASAPADELFKEFGFTVENIVAAAKELL 624 (624)
T ss_pred chh----hhc--------CCCceEEECCC-CCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Confidence 772 222 23668999999 99999999999999999999999998754
No 14
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=100.00 E-value=3.3e-88 Score=786.23 Aligned_cols=535 Identities=20% Similarity=0.250 Sum_probs=453.2
Q ss_pred HHHHHHHHHHHHhHhc-CCCCCCCcchHHHHHHHHhh-ccC----CC----CcEEEecCCchH---HHHHHHhCc---hh
Q 004946 101 QLAVEIRSELSSIVSK-TEKSLKSSLAAVELTVALHH-VFH----AP----VDKILWDVGEQT---YAHKILTGR---RS 164 (722)
Q Consensus 101 ~la~eiR~~ii~~~~~-~gGh~~~slg~vel~~aL~~-vf~----~p----~D~iv~d~GH~~---y~h~~ltGr---~~ 164 (722)
..++++|..+++++.+ .+||+|+++|+++++.+||+ +|+ .| +|+||+|+||.+ |+.+.+.|. .+
T Consensus 2 ~~~~~iR~~~~~~~~~a~~GH~g~~ls~a~i~~~Ly~~~l~~~p~~p~~~~rDrfvlS~GH~~~~lYa~l~~~G~~~~~e 81 (653)
T TIGR00232 2 KLANAIRHLAVDAIQKAKSGHPGAPLGAAPIAEVLWTKFLKFNPTNPKWINRDRFVLSNGHGSMLLYSLLHLTGYDLSIE 81 (653)
T ss_pred hHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCeEEEECccHHHHHHHHHHHcCCCCCHH
Confidence 4678899999999984 58999999999999999995 443 23 699999999999 999999997 47
Q ss_pred hhhHHHhhCC-CCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcC----------CCCeEEEEecCCCcccchHHH
Q 004946 165 LIHTLRKKDG-ISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKG----------KRECIVTVISNGTTMAGQAYE 233 (722)
Q Consensus 165 ~~~~~r~~gg-l~g~~~~~es~~d~~~~G~~G~~ls~A~G~A~A~~l~~----------~~~~Vv~viGDGa~~~G~~~E 233 (722)
++.++|+.++ +.|||.+..+++..+++|++|++++.|+|||+|.++++ .+++|+|++|||+++||.+||
T Consensus 82 ~L~~fr~~~s~~~ghp~~~~~~gi~~~tG~lG~gl~~AvG~Ala~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~EG~~~E 161 (653)
T TIGR00232 82 DLKQFRQLHSKTPGHPEFGHTAGVEATTGPLGQGIANAVGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGCLQEGISYE 161 (653)
T ss_pred HHHhcccCCCCCCCCCCCCCCCCeeeCCcchhccHHHHHHHHHHHHHHhhhccCCccCCcCCEEEEEEccccccccHHHH
Confidence 8999999996 88999987788888999999999999999999999763 378899999999999999999
Q ss_pred HHHHhhhcCCC-EEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHH
Q 004946 234 AMSNAGYLDSN-MIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEY 312 (722)
Q Consensus 234 Aln~A~~~~~p-livIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~ 312 (722)
|+++|+.+++| |++|++||+++ +++ ++...
T Consensus 162 A~~~A~~~~L~nLi~ivd~N~~~-i~~-------~~~~~----------------------------------------- 192 (653)
T TIGR00232 162 VASLAGHLKLGKLIVLYDSNRIS-IDG-------AVDGS----------------------------------------- 192 (653)
T ss_pred HHHHHHHhCCCcEEEEEeCCCee-ecc-------ccccc-----------------------------------------
Confidence 99999999955 99999999983 222 21100
Q ss_pred hhcccCCChhhhHhhcCceEEeec-CCCCHHHHHHHHHHHHhcCCCCCEEEEEEeeccCCCcccccccchhhccCCCCC-
Q 004946 313 ARGMIGPQGSTLFEELGLYYIGPV-DGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGASD- 390 (722)
Q Consensus 313 ~~~~~~~~~~~lfea~G~~~~~~v-dGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kG~G~~~ae~~~~~~~~H~~~~~- 390 (722)
...+...+|++|||+++ .| ||||++++.++++++++. .++|++|+++|.||+|++++|+ ..+|||.++.
T Consensus 193 ----~~~~~~~~~~a~Gw~~~-~v~DG~D~~ai~~A~~~a~~~-~~~P~~I~~~T~~g~G~~~~e~---~~~~H~~~~~~ 263 (653)
T TIGR00232 193 ----FTEDVAKRFEAYGWEVL-EVEDGHDLAAIDAAIEEAKAS-KDKPTLIEVTTTIGFGSPNKAG---THGVHGAPLGD 263 (653)
T ss_pred ----cCccHHHHHHhcCCcEE-EeCCCCCHHHHHHHHHHHHhC-CCCCEEEEEEeeecccCcccCC---CCcccCCCCCH
Confidence 00112568999999999 56 999999999999999873 2489999999999999998886 7789988640
Q ss_pred -------------C-------------------CCCC--------------------------C----------------
Q 004946 391 -------------S-------------------NSLP--------------------------F---------------- 396 (722)
Q Consensus 391 -------------~-------------------tg~~--------------------------~---------------- 396 (722)
. .+.+ +
T Consensus 264 ~~~~~~~~~l~~~~~~f~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~ 343 (653)
T TIGR00232 264 EDVKLTKKNLGWNYNPFEVPQEVYDHFQKTVKERGAKAEQEWNELFAAYKKKYPELAAEFTRRLSGELPADWDKKLPEFK 343 (653)
T ss_pred HHHHHHHHHhCCCCCCccCCHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHCHHHHHHHHHHHhccCchhhhhhhhhhh
Confidence 0 0100 0
Q ss_pred -CCCccchHHHHHHHHHHHHhcCCCEEEEecCCCCccchHH-----HHHhCCCceeecccchHHHHHHHHHHhc-CCCee
Q 004946 397 -GNYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQL-----FQEKFPERYFDVGMAEQHAVTFSAGLAC-GGLKP 469 (722)
Q Consensus 397 -~~~~~s~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~-----f~~~~p~R~~d~GIaE~~av~~AaGlA~-~G~~p 469 (722)
+....+.+++|+++|.++++.+|+++++++|+.+++.+.. |.++||+||||+||+||+|+++|+|||+ .|++|
T Consensus 344 ~~~~~~atR~~~g~~L~~la~~~p~iv~lsaDl~~s~~~~~~~~~~f~~~~p~rfi~~GIaEq~mv~~AaGlA~~gG~~p 423 (653)
T TIGR00232 344 AKLQALATRKYSQNVLNAIANVLPELLGGSADLAPSNLTKWKGSGDLHENPLGNYIHYGVREFAMGAIMNGIALHGGFKP 423 (653)
T ss_pred ccCcchHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCcccccccchhhcCCCCeEeecccHHHHHHHHHHHHHcCCCeE
Confidence 0011246788999999999999999999999988887755 8899999999999999999999999999 78999
Q ss_pred EEEecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCc-cCCCCCCcCcHHHHHHhcCCCCcEEEeeCCHHHHHHHHHHHhh
Q 004946 470 FCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVAS 548 (722)
Q Consensus 470 ~~~t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~ 548 (722)
|++||++|++|+++|| ++.|++++||++++++.|+ +|+||+|||+++|+++||++|||+|++|+|+.|+..++++|+.
T Consensus 424 ~~~tf~~F~~r~~~~i-r~~a~~~lpV~~v~th~g~~~G~dG~THq~iedia~lr~iPn~~v~~PaD~~E~~~~~~~a~~ 502 (653)
T TIGR00232 424 YGGTFLMFVDYARPAI-RLAALMKLPVIYVYTHDSIGVGEDGPTHQPIEQLASLRAIPNLSVWRPCDGNETAAAWKYALE 502 (653)
T ss_pred EEEEhHHHHHHHHHHH-HHHHhcCCCEEEEEeCCccCCCCCCcccCCHHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHh
Confidence 9999999999999987 5559999999999999888 8999999999999999999999999999999999999999996
Q ss_pred hCCCCEEEEecCCCcccccCCCCCCCCccccccEEEE--EeCCcEEEEEechhhHHHHHHHHHHHhcCCcEEEeecCccc
Q 004946 549 IDDRPVCFRYPRGAIVRTDLPGYRGIPIEEIGKGKVL--VEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCK 626 (722)
Q Consensus 549 ~~~~Pv~ir~~r~~~~~~~~p~~~~~~~~~igk~~vl--~eG~dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lk 626 (722)
..++|+|||++|+..+.. ......++ ..|+ +++ ++|+||+||++|+++..|++|++.|+++||+++|||++|++
T Consensus 503 ~~~gP~~irl~r~~~~~~--~~~~~~~~-~~G~-~vl~~~~g~dv~iia~G~~v~~al~Aa~~L~~~Gi~~~VI~~~~ik 578 (653)
T TIGR00232 503 SQDGPTALILSRQNLPQL--EESSLEKV-LKGG-YVLKDSKGPDIILIATGSEVSLAVEAAKKLAAENIKVRVVSMPSFD 578 (653)
T ss_pred cCCCcEEEEEcCCccCCC--Cccccccc-CCCc-EEEEecCCCCEEEEEeChHHHHHHHHHHHHHhcCCcEEEEecccCc
Confidence 678999999999874322 11111234 4554 666 66899999999999999999999999999999999999999
Q ss_pred cchHHH---HHHHhcCCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHH
Q 004946 627 PLDIKL---VRELCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHI 703 (722)
Q Consensus 627 Pld~e~---i~~~~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~v~~ig~~d~f~~~g~~~~l~~~~gl~~~~I 703 (722)
|||++. +.+++++++.+||+|+|+.+||. .++ +...+++|+ |.|+.+|+.+++++++|||+++|
T Consensus 579 pld~~~~~~~~~~~~~~~~vvtvEe~~~~g~~----~~~--------~~~~~~igv-d~fg~sg~~~~L~~~~Glt~e~I 645 (653)
T TIGR00232 579 LFDKQDEEYRESVLPANVTRLAVEAGAADEWY----KYA--------GLVGAILGM-DSFGESAPGDKLFEEFGFTVENV 645 (653)
T ss_pred ccccCCHHHHHHHhcccCceEEEecccHhHHH----Hhc--------CCcceEEEe-cCCcCCCCHHHHHHHhCCCHHHH
Confidence 997654 88888888899999999976663 111 111257898 99999999999999999999999
Q ss_pred HHHHHHHh
Q 004946 704 AATALSLL 711 (722)
Q Consensus 704 ~~~i~~ll 711 (722)
+++|++++
T Consensus 646 ~~~i~~~~ 653 (653)
T TIGR00232 646 VAKAKKLL 653 (653)
T ss_pred HHHHHHhC
Confidence 99998764
No 15
>PRK12754 transketolase; Reviewed
Probab=100.00 E-value=3.1e-87 Score=772.28 Aligned_cols=540 Identities=18% Similarity=0.219 Sum_probs=452.7
Q ss_pred HHHHHHHHHHHHHHhHhc-CCCCCCCcchHHHHHHHHhh-ccC----CC----CcEEEecCCchH---HHHHHHhCc---
Q 004946 99 LKQLAVEIRSELSSIVSK-TEKSLKSSLAAVELTVALHH-VFH----AP----VDKILWDVGEQT---YAHKILTGR--- 162 (722)
Q Consensus 99 l~~la~eiR~~ii~~~~~-~gGh~~~slg~vel~~aL~~-vf~----~p----~D~iv~d~GH~~---y~h~~ltGr--- 162 (722)
-+++++++|..+++++.+ .+||+|+++|+++++.+||+ +++ .| +||||+|+||.+ |+.+.+.|.
T Consensus 4 ~~~~~~~iR~~~~~~~~~a~sGH~G~~ls~a~i~~~Ly~~~l~~~p~~p~w~~RDRfvlS~GH~~~~lYa~l~~~G~~~~ 83 (663)
T PRK12754 4 RKELANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLNHNPQNPSWADRDRFVLSNGHGSMLIYSLLHLTGYDLP 83 (663)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHhcCCCccCCCCCCCCeEEEeCccHHHHHHHHHHHcCCCCC
Confidence 356799999999999985 58999999999999999995 333 22 699999999999 999999996
Q ss_pred hhhhhHHHhhCC-CCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcC----------CCCeEEEEecCCCcccchH
Q 004946 163 RSLIHTLRKKDG-ISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKG----------KRECIVTVISNGTTMAGQA 231 (722)
Q Consensus 163 ~~~~~~~r~~gg-l~g~~~~~es~~d~~~~G~~G~~ls~A~G~A~A~~l~~----------~~~~Vv~viGDGa~~~G~~ 231 (722)
.+++.++||+|+ +.|||.....++.++++|++|++++.|+|||+|.++++ .+++|+|++|||+++||.+
T Consensus 84 ~e~L~~fr~~gs~~~gHpe~~~~pgve~stG~LGqGl~~AvG~AlA~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~ 163 (663)
T PRK12754 84 MEELKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGIS 163 (663)
T ss_pred HHHHHHhccCCCCCCCCCCCCCCCCccccCCcccchHHHHHHHHHHHHHhhhccCcccccccCCEEEEEECcchhhchHH
Confidence 778999999996 88999887788888999999999999999999999876 3789999999999999999
Q ss_pred HHHHHHhhhcCCC-EEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHH
Q 004946 232 YEAMSNAGYLDSN-MIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVD 310 (722)
Q Consensus 232 ~EAln~A~~~~~p-livIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~ 310 (722)
|||+++|+++++| |++|++||+++ + +.++...
T Consensus 164 ~EA~~~A~~~kL~nLi~ivD~N~~~-i-------dg~~~~~--------------------------------------- 196 (663)
T PRK12754 164 HEVCSLAGTLKLGKLIAFYDDNGIS-I-------DGHVEGW--------------------------------------- 196 (663)
T ss_pred HHHHHHHHHhCCCCEEEEEEcCCCc-c-------Ccchhhc---------------------------------------
Confidence 9999999999965 89999999983 2 2221100
Q ss_pred HHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEEEEEeeccCCCcccccccchhhccCCCCC
Q 004946 311 EYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGASD 390 (722)
Q Consensus 311 ~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kG~G~~~ae~~~~~~~~H~~~~~ 390 (722)
...+...+|++|||+++.+|||||++++.+++++++.. .++|++|+++|.||+|.+++|+ ..+|||.++.
T Consensus 197 ------~~~~~~~r~~a~Gw~vi~vvDG~D~~ai~~A~~~a~~~-~~~Pt~I~~~T~~g~G~~~~e~---~~~~Hg~~l~ 266 (663)
T PRK12754 197 ------FTDDTAMRFEAYGWHVIRGIDGHDADSIKRAVEEARAV-TDKPSLLMCKTIIGFGSPNKAG---THDSHGAPLG 266 (663)
T ss_pred ------cCccHHHHHHhcCCeEEeeECCCCHHHHHHHHHHHHhc-CCCCEEEEEEeeeccCccccCC---CccccCCCCC
Confidence 00122568999999999548999999999999998863 4789999999999999998885 7899988750
Q ss_pred --------------C-----------------CCCC------------------------------CC------------
Q 004946 391 --------------S-----------------NSLP------------------------------FG------------ 397 (722)
Q Consensus 391 --------------~-----------------tg~~------------------------------~~------------ 397 (722)
. .+++ .+
T Consensus 267 ~~~~~~~~~~l~~~~~~F~v~~~v~~~~~~~~~~~~~~~~w~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~ 346 (663)
T PRK12754 267 DAEIALTREQLGWKYAPFEIPSEIYAQWDAKEAGQAKESAWNEKFAAYAKAYPQEAAEFTRRMKGEMPADFDAKAKEFIA 346 (663)
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHhhhchHHHHHHHHHHHHHHHHCHHHHHHHHHHhcCCCchhHHHHHHHHhh
Confidence 0 0110 00
Q ss_pred -----CCccchHHHHHHHHHHHHhcCCCEEEEecCCCCccc-----hHHHHHhCCCceeecccchHHHHHHHHHHhc-CC
Q 004946 398 -----NYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLS-----LQLFQEKFPERYFDVGMAEQHAVTFSAGLAC-GG 466 (722)
Q Consensus 398 -----~~~~s~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~-----l~~f~~~~p~R~~d~GIaE~~av~~AaGlA~-~G 466 (722)
......|++++++|.++++.+|+++++++|+.+++. ...|.++||+|||++||+||+|+++|+|||+ .|
T Consensus 347 ~~~~~~~~~atR~~~~~~L~~la~~~~~lv~~sADl~~s~~~~~~~~~~f~~~~p~r~i~~GIaE~~Mv~iaaGlA~~~G 426 (663)
T PRK12754 347 KLQANPAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDAAGNYIHYGVREFGMTAIANGIALHGG 426 (663)
T ss_pred hhcccccchHHHHHHHHHHHHHHhhCCCEEEEeCCcccccCccccccccccccCCCCeEeeccchhhHHHHHhhHHhcCC
Confidence 011246788999999999999999999999988775 5789899999999999999999999999999 68
Q ss_pred CeeEEEecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCc-cCCCCCCcCcHHHHHHhcCCCCcEEEeeCCHHHHHHHHHH
Q 004946 467 LKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVAT 545 (722)
Q Consensus 467 ~~p~~~t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~ 545 (722)
++||++||++|++|++|||++. |++++||+++++++|+ +|+||+|||+++|+++||.||||+|++|+|+.|+..+++.
T Consensus 427 ~~Pf~~tf~~F~~r~~~qir~~-a~~~l~V~~v~th~gi~~G~DG~THq~iEdla~lR~iPn~~V~~PaD~~E~~~~~~~ 505 (663)
T PRK12754 427 FLPYTSTFLMFVEYARNAVRMA-ALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTPNMSTWRPCDQVESAVAWKY 505 (663)
T ss_pred CeEEEEeeHHHHHHHHHHHHHH-HHcCCCeEEEEECCccccCCCCCCcccHHHHHHHhcCCCcEEecCCCHHHHHHHHHH
Confidence 9999999999999999999765 9999999999999999 8999999999999999999999999999999999999999
Q ss_pred HhhhCCCCEEEEecCCCcccccCCCCCCCCccccccEEEEEeCC---cEEEEEechhhHHHHHHHHHHHhcCCcEEEeec
Q 004946 546 VASIDDRPVCFRYPRGAIVRTDLPGYRGIPIEEIGKGKVLVEGK---DVALLGYGAMVQNCLKARALLSKLGIDVTVADA 622 (722)
Q Consensus 546 a~~~~~~Pv~ir~~r~~~~~~~~p~~~~~~~~~igk~~vl~eG~---dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl 622 (722)
++...++|+|||++|+..+...........+ ..|+ ++++++. |++||++|+++++|++|++.|+++||+++|||+
T Consensus 506 a~~~~~gP~yirl~R~~~p~~~~~~~~~~~~-~~G~-~vl~~~~~~~dv~iiatGs~v~~Al~Aa~~L~~~Gi~~~Vvs~ 583 (663)
T PRK12754 506 GVERQDGPTALILSRQNLAQQERTEEQLANI-ARGG-YVLKDCAGQPELIFIATGSEVELAVAAYEKLTAEGVKARVVSM 583 (663)
T ss_pred HHhCCCCCEEEEeCCCCCCCCCCccchhhhc-ccCc-EEEEecCCCCCEEEEEECHHHHHHHHHHHHHHhhCCCcEEEEc
Confidence 9986689999999998754321101001223 3343 7888864 999999999999999999999999999999999
Q ss_pred CccccchHH---HHHHHhcCC-CeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCC
Q 004946 623 RFCKPLDIK---LVRELCQNH-TFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGL 698 (722)
Q Consensus 623 ~~lkPld~e---~i~~~~~~~-~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~v~~ig~~d~f~~~g~~~~l~~~~gl 698 (722)
+|++|||++ .....+... ...|++|.+...||... +..++. .+|+ |+|+.+|+.+++++++||
T Consensus 584 ~s~kp~d~q~~~y~~~il~~~~~~~v~iE~~~~~~w~~~----~~~~~~--------~igi-~~FG~Sg~~~~l~~~~G~ 650 (663)
T PRK12754 584 PSTDAFDKQDAAYRESVLPKAVSARVAVEAGIADYWYKY----VGLNGA--------IVGM-TTFGESAPAELLFEEFGF 650 (663)
T ss_pred CccCcCCCCCHHHHHhcCccccccceEeecccccchhhh----ccCCCC--------EEEe-CCCCCCCCHHHHHHHhCC
Confidence 999999986 333344332 24589999877788743 333331 3787 889999999999999999
Q ss_pred CHHHHHHHHHHHh
Q 004946 699 TGHHIAATALSLL 711 (722)
Q Consensus 699 ~~~~I~~~i~~ll 711 (722)
|+++|++++++++
T Consensus 651 t~e~I~~~~~~~~ 663 (663)
T PRK12754 651 TVDNVVAKAKALL 663 (663)
T ss_pred CHHHHHHHHHHhC
Confidence 9999999998764
No 16
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=100.00 E-value=4.4e-79 Score=709.71 Aligned_cols=552 Identities=17% Similarity=0.172 Sum_probs=453.2
Q ss_pred HHHHHHHHHHHHHHHHhHhc-C------CCCCCCcchHHHHHHHHhh-ccCCC-----CcEEEecCCchH---HHHHHHh
Q 004946 97 KELKQLAVEIRSELSSIVSK-T------EKSLKSSLAAVELTVALHH-VFHAP-----VDKILWDVGEQT---YAHKILT 160 (722)
Q Consensus 97 ~~l~~la~eiR~~ii~~~~~-~------gGh~~~slg~vel~~aL~~-vf~~p-----~D~iv~d~GH~~---y~h~~lt 160 (722)
+-.++++..+|..++.|+.+ + +||+++++|+++++.+||. +|+.+ +| +|+++||.+ |+...+.
T Consensus 73 ~~~~~~a~~iR~~a~~mv~~A~~~~~~~gGH~gs~lS~a~i~~vLy~~~lr~~~~~~~rD-~VlskGHasp~lYA~l~l~ 151 (889)
T TIGR03186 73 QLEERLAAILRWNALAMVVRANRAYGELGGHIASYASAADLFEVGFNHFFRAAGDASGGD-LVYFQPHSAPGVYARAFLE 151 (889)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcCcHHHHHHHHHHHHHhCCCCCCCCCCC-EEEECCchHHHHHHHHHHc
Confidence 33578899999999999974 3 5999999999999999984 56521 56 799999999 9999999
Q ss_pred Cc--hhhhhHHHhh--C-CCCCCCCCCCCC-CCCcCcCCCcchHHHHHHHHHHHHHcC-------CCCeEEEEecCCCcc
Q 004946 161 GR--RSLIHTLRKK--D-GISGYTSRSESE-YDPFNAGHGCNSVSAGLGMAVARDIKG-------KRECIVTVISNGTTM 227 (722)
Q Consensus 161 Gr--~~~~~~~r~~--g-gl~g~~~~~es~-~d~~~~G~~G~~ls~A~G~A~A~~l~~-------~~~~Vv~viGDGa~~ 227 (722)
|+ .+++.+|||. + +++++|.+...+ +..|+||++|+|++.|+|||++.|+.. .+++|+|++|||+++
T Consensus 152 G~l~~e~L~~fRq~~~~~gl~~~phP~~~p~~ve~sTGSLGqGl~~AvG~Ala~kyl~~r~~~~~~~~rVy~llGDGEl~ 231 (889)
T TIGR03186 152 GFLSDAQLAHYRQEIAGPGLCSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQNRGLARTEGRKVWGFFGDGEMD 231 (889)
T ss_pred CCCCHHHHHHhcCCCCCCCCCCCCCcccCCCCeEcCCCCchHHHHHHHHHHHHHHHHhhccccCCCCceEEEEEcchhhc
Confidence 97 7889999997 4 578877765534 578999999999999999999988432 368999999999999
Q ss_pred cchHHHHHHHhhhcC-CCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHH
Q 004946 228 AGQAYEAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWA 306 (722)
Q Consensus 228 ~G~~~EAln~A~~~~-~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~ 306 (722)
||.+|||+..|++++ .||++|+|+|+++ .+.++......++.
T Consensus 232 EG~~wEA~~~Aa~~kLdNLi~IvD~N~~q--------lDG~t~~~~~~~e~----------------------------- 274 (889)
T TIGR03186 232 EPESIGALSLAARERLDNLVFVINCNLQR--------LDGPVRGNGRIIDE----------------------------- 274 (889)
T ss_pred cHHHHHHHHHHHHhCCCCEEEEEeCCCCc--------cCCccccccccchH-----------------------------
Confidence 999999999999999 8999999999983 12222110000000
Q ss_pred HHHHHHhhcccCCChhhhHhhcCceEEeec--------------------------------------------------
Q 004946 307 AKVDEYARGMIGPQGSTLFEELGLYYIGPV-------------------------------------------------- 336 (722)
Q Consensus 307 ~~~~~~~~~~~~~~~~~lfea~G~~~~~~v-------------------------------------------------- 336 (722)
...+|++|||+++.++
T Consensus 275 --------------l~~kf~a~GW~vi~v~wG~~wd~l~~~d~~~~L~~~~~~~~dg~yq~~~~~~ga~~R~~ff~~~~~ 340 (889)
T TIGR03186 275 --------------LESQFAGAGWNVIKVLWGSDWDALFARDATGALARAFAHTVDGQFQTFSANDGAYNRARFFGQDPA 340 (889)
T ss_pred --------------HHHHHHhCCCEEEEEeecCchHHhhccccchHHHHHHHhcccHHHHHHhhcchHHHHHHhcCccHH
Confidence 1335566666665322
Q ss_pred ------------------CCCCHHHHHHHHHHHHhcCCCCCEEEEEEeeccCCCcccccccchhhccCCCC---------
Q 004946 337 ------------------DGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGAS--------- 389 (722)
Q Consensus 337 ------------------dGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kG~G~~~ae~~~~~~~~H~~~~--------- 389 (722)
+|||+++|.+|++++++. .++|++|.++|+||+|...+++ +..++|+..+
T Consensus 341 ~~~lv~~~sD~~i~~l~rgGHD~~~i~~A~~~A~~~-~~~PTvIla~TvkG~G~~~~g~--~~~~~H~~~~l~~e~~~~~ 417 (889)
T TIGR03186 341 LAALVAHLSDEDIDRLRRGGHDARKLYAAYDRAVRH-EGRPTVILAKTMKGFGMGAIGQ--GRMTTHQQKKLDVEALLAF 417 (889)
T ss_pred HHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhC-CCCCEEEEEEeeecCCCCcccC--ccccccCcCcCCHHHHHHH
Confidence 799999999999988874 4689999999999999977654 5667777443
Q ss_pred ------C-------C-----------------------CCC----------C--CC-------------CCccchHHHHH
Q 004946 390 ------D-------S-----------------------NSL----------P--FG-------------NYSRTYDDCFI 408 (722)
Q Consensus 390 ------~-------~-----------------------tg~----------~--~~-------------~~~~s~~~a~~ 408 (722)
+ . .|. + ++ ....+.+.||+
T Consensus 418 r~~~g~~~~de~~~~~~~~~~~~~s~~~~~l~~~r~~l~g~~p~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~sT~~Af~ 497 (889)
T TIGR03186 418 RDRFRLPLSDADVEQLKFYKPDEDSAEMRYLHARRAALGGYLPRRRTAATHALAVPALPSWGRFALDAEGKEMSTTMAIV 497 (889)
T ss_pred HHHcCCCCChHHhhcccccCCCCCCHHHHHHHHHHHHcCCCCCCCCCCCccccCCCCcchhhhhhccCCCCcccHHHHHH
Confidence 0 0 000 0 00 02346788999
Q ss_pred HHHHHHHh---cCCCEEEEecCCCCccchHH-------------------------HHHhCCCceeecccchHHHHH--H
Q 004946 409 EALVMEAE---KDKDIVVVHAGMEMDLSLQL-------------------------FQEKFPERYFDVGMAEQHAVT--F 458 (722)
Q Consensus 409 ~~L~~~~~---~d~~iv~i~ad~~~~~~l~~-------------------------f~~~~p~R~~d~GIaE~~av~--~ 458 (722)
+.|..+++ ..++||.|.+|+..++|+++ |++.+|+|||++||+||+|++ +
T Consensus 498 r~l~~L~~~~~~~~riV~i~pD~a~t~gm~~~f~~~gi~~~~gq~y~~~d~~~~~~y~e~~p~R~ie~GIAEqnmv~~~i 577 (889)
T TIGR03186 498 RMLGALLKDAELGPRIVPIVADEARTFGMANLFRQVGIYSPLGQRYEPEDLGSMLYYREDTDGQILEEGISEAGAISSWI 577 (889)
T ss_pred HHHHHHHhCccccCCEEEeCCcccccCCchhhhccccccCcccccCCccchHHHHHHhhcCCCcEEEechhhHHHHHHHH
Confidence 99766665 45789999999999996643 456789999999999999999 9
Q ss_pred HHHHhcC----CCeeEEEecHhh-HHHHHHHHHHHHhcCCCCEEEEEeCCCc--cCCCCCCcCcHHHHHHhcCCCCcEEE
Q 004946 459 SAGLACG----GLKPFCIIPSAF-LQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDITFMSCLPNMIVM 531 (722)
Q Consensus 459 AaGlA~~----G~~p~~~t~~~F-l~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~d~a~~~~iP~l~V~ 531 (722)
|+|+|++ |++||+.+|++| ++|++|||++. |+++++|++++.++|+ .|.+|+|||..+|++++|.+|||+||
T Consensus 578 AAGlA~a~~G~g~iPf~~tya~F~~~Ra~Dqir~a-~~~~a~v~lvG~~aG~tTlg~eG~tHq~~eDial~r~iPn~tv~ 656 (889)
T TIGR03186 578 AAATSYSVHDLPMLPFYIYYSMFGFQRIGDLIWAA-ADQRARGFLIGATSGKTTLGGEGLQHQDGTSHLAASTVPNCRAW 656 (889)
T ss_pred HHHHhhhhcCCCceEEEEehHHhHhhhHHHHHHHH-hhcCCCcEEEEECCCccCCCCCcccccchHhHHHHhhCCCCEEE
Confidence 9999998 889999999999 59999999877 9999999999999999 58999999999999999999999999
Q ss_pred eeCCHHHHHHHHHHHhhh-----CCCCEEEEecCCCcccccCCCCCC-CCccccc--cE-EEEE----eCCcEEEEEech
Q 004946 532 APSDEDELVDMVATVASI-----DDRPVCFRYPRGAIVRTDLPGYRG-IPIEEIG--KG-KVLV----EGKDVALLGYGA 598 (722)
Q Consensus 532 ~Psd~~E~~~~l~~a~~~-----~~~Pv~ir~~r~~~~~~~~p~~~~-~~~~~ig--k~-~vl~----eG~dv~lva~Gs 598 (722)
.|+|+.|+..++++++.+ .++|+|||+.|.+.....++.. + ..+ +.+ |+ ++++ +|++|+|+++|.
T Consensus 657 ~PaDa~E~a~iv~~~~~rm~~~~~~gp~YlRl~r~~~~~p~~~~~-~~~~~-~~gi~kg~y~l~~~~~~g~dV~LlasG~ 734 (889)
T TIGR03186 657 DPAFAYEVAVIVDEGMREMLERQRDEFYYLTVTNENYAQPSLPED-RLDAV-RRGILKGMYPLDPAALAAARVQLLGSGA 734 (889)
T ss_pred eCCCHHHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCCCCCcCCC-cccch-hcchhheeeEeeccCCCCCCEEEEeccH
Confidence 999999999999987652 3689999999987432223321 1 123 344 46 7788 478999999999
Q ss_pred hhHHHHHHHHHHHhc-CCcEEEeecCccccchHHHHHHHhcCCCeEEEEcCC---C-CCChHH-------------HHHH
Q 004946 599 MVQNCLKARALLSKL-GIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEG---S-IGGFGS-------------HVSH 660 (722)
Q Consensus 599 ~v~~aleAa~~L~~~-Gi~v~Vidl~~lkPld~e~i~~~~~~~~~vvvvEe~---~-~gG~gs-------------~v~~ 660 (722)
++++|++|+++|+++ ||+++|+|+.|+||||++.+. +++++.|+++||+ + .||+++ .|++
T Consensus 735 ~v~eAL~AAe~L~~~~GI~a~V~sv~SikpLdrd~i~--a~r~~~l~t~Eeh~~~~v~ggLg~~~~p~va~~D~~~avae 812 (889)
T TIGR03186 735 ILGEVQAAARLLRDDWGIDAAVWSVTSFTELARDGRA--AERAQRLGDAERPPSPHVAQALGATQGPVIAATDYVRAVPE 812 (889)
T ss_pred HHHHHHHHHHHHhhhhCCCeEEEECCCCCHhHHHHHH--HHHhCCcccccccccccHhhhhCCCCCCeeeecchHHHHHH
Confidence 999999999999987 999999999999999999996 6788899999997 5 699999 9999
Q ss_pred HHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHhhc
Q 004946 661 FIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGR 713 (722)
Q Consensus 661 ~l~~~~~~~~~~~v~~ig~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~ll~~ 713 (722)
++++.. +.++.++|+ |.|+.+|++++++++||+|+++|+.+++++|..
T Consensus 813 ~i~~~~----p~~~~~LG~-D~FG~Sgtr~~Lr~~fglda~~Iv~aal~~L~~ 860 (889)
T TIGR03186 813 LIRAYV----PRRYVTLGT-DGFGRSDTRAALRAFFEVDRASIVIAALQALAD 860 (889)
T ss_pred HHHhhC----CCCEEEecc-CCCCCcCCHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 998753 568999999 999999999999999999999999999998864
No 17
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=100.00 E-value=1.6e-77 Score=696.87 Aligned_cols=550 Identities=17% Similarity=0.189 Sum_probs=458.1
Q ss_pred HHHHHHHHHHHHHHhHhc-C------CCCCCCcchHHHHHHHHhh-ccCCC-----CcEEEecCCchH---HHHHHHhCc
Q 004946 99 LKQLAVEIRSELSSIVSK-T------EKSLKSSLAAVELTVALHH-VFHAP-----VDKILWDVGEQT---YAHKILTGR 162 (722)
Q Consensus 99 l~~la~eiR~~ii~~~~~-~------gGh~~~slg~vel~~aL~~-vf~~p-----~D~iv~d~GH~~---y~h~~ltGr 162 (722)
.+.+++.||...+.++.+ + |||+++++|+++++.+||. +|+.| +| +|+++||.+ |+...+.|+
T Consensus 81 e~~i~~~iR~~a~~mv~~An~~~~~~GGH~~s~~S~a~i~~vl~~~~~r~~~~~~~~D-~V~skGHasp~lYA~~~l~G~ 159 (891)
T PRK09405 81 ERRIRSYIRWNAAAMVLRANKKDLGLGGHISSFASSATLYEVGFNHFFRAPNEPHGGD-LVFFQGHASPGIYARAFLEGR 159 (891)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCCcccChHHHHHHHHHHHHhhCCCCCCCCCCC-EEEECchHHHHHHHHHHHcCC
Confidence 356688999999999873 2 4999999999999999984 56532 56 888999999 999999998
Q ss_pred --hhhhhHHHhh--C-CCCCCCCCCCC-CCCCcCcCCCcchHHHHHHHHHHHHH-------cCCCCeEEEEecCCCcccc
Q 004946 163 --RSLIHTLRKK--D-GISGYTSRSES-EYDPFNAGHGCNSVSAGLGMAVARDI-------KGKRECIVTVISNGTTMAG 229 (722)
Q Consensus 163 --~~~~~~~r~~--g-gl~g~~~~~es-~~d~~~~G~~G~~ls~A~G~A~A~~l-------~~~~~~Vv~viGDGa~~~G 229 (722)
.+++.+|||. | ++++||++..- .+..|.+|++|+|++.|+|+|++.|+ +..+++|+|++|||+++||
T Consensus 160 l~~e~L~~fR~~~~g~gl~syPhp~~~p~~~~~~tgS~G~G~~~a~~~A~~~kyl~~~~~~~~~~~rv~~~~GDGEldEg 239 (891)
T PRK09405 160 LTEEQLDNFRQEVDGKGLSSYPHPWLMPDFWQFPTVSMGLGPIMAIYQARFLKYLENRGLKDTSDQKVWAFLGDGEMDEP 239 (891)
T ss_pred CCHHHHHHhcCCCCCCCCCCCCCcCCCCCCeecCccccchhHHHHHHHHHhCccccccccccCCCceEEEEEcchhhccH
Confidence 7889999996 4 79999998654 46779999999999999999999883 4568999999999999999
Q ss_pred hHHHHHHHhhhcC-CCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHH
Q 004946 230 QAYEAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAK 308 (722)
Q Consensus 230 ~~~EAln~A~~~~-~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~ 308 (722)
.+|||+..|++++ .||+||+|+|.++ .+.++-...+.++
T Consensus 240 ~~~EA~~~A~~~~LdNLi~ivD~N~q~--------lDG~v~~~~~~~~-------------------------------- 279 (891)
T PRK09405 240 ESLGAISLAAREKLDNLIFVINCNLQR--------LDGPVRGNGKIIQ-------------------------------- 279 (891)
T ss_pred HHHHHHHHHHHhCCCCEEEEEECCCcc--------cCCccccccccch--------------------------------
Confidence 9999999999999 8999999999983 2223221100000
Q ss_pred HHHHhhcccCCChhhhHhhcCceEEeec-------------------------C--------------------------
Q 004946 309 VDEYARGMIGPQGSTLFEELGLYYIGPV-------------------------D-------------------------- 337 (722)
Q Consensus 309 ~~~~~~~~~~~~~~~lfea~G~~~~~~v-------------------------d-------------------------- 337 (722)
+...+|+++||+++.++ |
T Consensus 280 -----------~l~~~f~a~GW~Vi~v~wG~~wd~l~~~d~~g~L~~~~~~~~Dg~yq~~~~~~ga~~R~~ffg~~~~~~ 348 (891)
T PRK09405 280 -----------ELEGIFRGAGWNVIKVIWGSRWDPLLAKDTSGKLVQLMNETVDGDYQTYKAKDGAYVREHFFGKYPETK 348 (891)
T ss_pred -----------hHHHHHhhCCCEEEEEeccccchhhhccCCccHHHHHHHhCCcHHHHHHHhcccHHHHHHhcCCCHHHH
Confidence 01456788888887432 3
Q ss_pred -----------------CCCHHHHHHHHHHHHhcCCCCCEEEEEEeeccCCC-cccccccchhhccCCCC----------
Q 004946 338 -----------------GHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRA-EDTQKSEAIEKQQEGAS---------- 389 (722)
Q Consensus 338 -----------------Ghd~~~l~~al~~a~~~~~~~P~lI~v~T~kG~G~-~~ae~~~~~~~~H~~~~---------- 389 (722)
|||+++|.+|++++++. .++|++|.++|+||+|. +..|. ...+|+..+
T Consensus 349 ~lv~~~sD~~i~~l~~gGHD~~~i~~A~~~A~~~-~~~PtvIia~TvkG~G~~~~~e~---~~~~H~~~~l~~e~~~~~r 424 (891)
T PRK09405 349 ALVADMSDDDIWALNRGGHDPRKVYAAYKAAVEH-KGQPTVILAKTIKGYGMGEAGEG---KNIAHQVKKLDLDDLKHFR 424 (891)
T ss_pred HHHhhCCHHHHHHhccCCCCHHHHHHHHHHHHhC-CCCCEEEEEeceecCCCCcccCC---CccccCCCCCCHHHHHHHH
Confidence 99999999999988874 47899999999999999 55554 677777532
Q ss_pred -----C--------------CC---------------C-C---------CCC---------------CCccchHHHHHHH
Q 004946 390 -----D--------------SN---------------S-L---------PFG---------------NYSRTYDDCFIEA 410 (722)
Q Consensus 390 -----~--------------~t---------------g-~---------~~~---------------~~~~s~~~a~~~~ 410 (722)
+ +. | . +++ ....+.+.+|+++
T Consensus 425 ~~~g~~~~d~~~~~~~~~~~~~~s~e~~~l~~~r~~l~g~~p~r~~~~~~~~~P~~~~~~~~~~~~~~~~~sT~~Afgr~ 504 (891)
T PRK09405 425 DRFNIPISDEQLEKLPYYKPGEDSPEIKYLHERRKALGGYLPARRPKFEPLEVPALSAFEALLKGSGEREISTTMAFVRI 504 (891)
T ss_pred HHcCCCCChhHhccCCCcCCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCChhhHHHhhccCCCCcccHHHHHHHH
Confidence 0 00 0 0 000 1234678999999
Q ss_pred HHHHHhc---CCCEEEEecCCCCccch-------------------------HHHHHhCCCceeecccchHHHHH--HHH
Q 004946 411 LVMEAEK---DKDIVVVHAGMEMDLSL-------------------------QLFQEKFPERYFDVGMAEQHAVT--FSA 460 (722)
Q Consensus 411 L~~~~~~---d~~iv~i~ad~~~~~~l-------------------------~~f~~~~p~R~~d~GIaE~~av~--~Aa 460 (722)
|.++++. .++||.+.+|+..++|+ ..|++.||+|||++||+||+|++ +|+
T Consensus 505 L~~L~~~~~~~~riV~i~pD~a~t~g~~~~f~~~gi~~~~gq~y~~~d~~~~~~yke~~PgRf~e~GIAEqnmv~~~vAA 584 (891)
T PRK09405 505 LNILLKDKEIGKRIVPIIPDEARTFGMEGLFRQIGIYNPHGQLYTPVDRDQLMYYKESKDGQILQEGINEAGAMASWIAA 584 (891)
T ss_pred HHHHHhccccCCcEEEeccccccccCcchhhccccccccccccccccccHHHHHHHHcCCCcEEEechhhhHHHHHHHHH
Confidence 9999996 89999999999998887 56778999999999999999999 999
Q ss_pred HHhcC----CCeeEEEecHhh-HHHHHHHHHHHHhcCCCCEEEEEeCCCc-cCCCCCCcCcHHHHHHhcCCCCcEEEeeC
Q 004946 461 GLACG----GLKPFCIIPSAF-LQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPS 534 (722)
Q Consensus 461 GlA~~----G~~p~~~t~~~F-l~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~d~a~~~~iP~l~V~~Ps 534 (722)
|+|++ |++||+.+|++| ++|++|||++.+++++++|+++.+++|+ .+.+|.|||..+|++++|.+|||+||.|+
T Consensus 585 GlA~a~~G~g~iPF~~tya~F~~~Ra~Dqir~a~~~~~~~v~iggt~gg~tl~~eG~qHqdg~s~~l~raiPn~tv~~PA 664 (891)
T PRK09405 585 ATSYSTHGEPMIPFYIYYSMFGFQRIGDLAWAAGDQRARGFLLGGTAGRTTLNGEGLQHEDGHSHILASTIPNCVSYDPA 664 (891)
T ss_pred HHhhhhcCCCceEEEEehHHhhhhhHHHHHHHHHHhcCCCeEEEEECccccCCCCcccCCchhhHHHHhhCCCCEEEeCC
Confidence 99998 889999999999 7999999999999999999999999998 68899999999999999999999999999
Q ss_pred CHHHHHHHHHHHhh---hCCC--CEEEEecCCCcccccCCCCCCCCccccccE-EEEEeCC------cEEEEEechhhHH
Q 004946 535 DEDELVDMVATVAS---IDDR--PVCFRYPRGAIVRTDLPGYRGIPIEEIGKG-KVLVEGK------DVALLGYGAMVQN 602 (722)
Q Consensus 535 d~~E~~~~l~~a~~---~~~~--Pv~ir~~r~~~~~~~~p~~~~~~~~~igk~-~vl~eG~------dv~lva~Gs~v~~ 602 (722)
|+.|+..+++.++. ...+ |.|+|+...+......| ++..+ .++|+ +++++|. +|+|+++|.++++
T Consensus 665 Da~E~a~iv~~~l~rm~~~~~~~~yYlrl~ne~~~~~~~p--e~~~~-~igKg~y~Lr~g~~~~~~~dV~LlasG~~v~e 741 (891)
T PRK09405 665 FAYEVAVIVQDGLRRMYGEQENVFYYITVMNENYHQPAMP--EGAEE-GILKGMYKLETAEGKKGKPKVQLLGSGTILRE 741 (891)
T ss_pred CHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCCCCC--ccccc-ccceEEEEeccCCCCCCCCCEEEEeccHHHHH
Confidence 99999999999875 1334 77788752222211122 23456 89997 8999976 8999999999999
Q ss_pred HHHHHHHHHh-cCCcEEEeecCccccchHHHHHHHh---------cCCCeEEEEcCCCCCChH-------HHHHHHHHhc
Q 004946 603 CLKARALLSK-LGIDVTVADARFCKPLDIKLVRELC---------QNHTFLITVEEGSIGGFG-------SHVSHFIALD 665 (722)
Q Consensus 603 aleAa~~L~~-~Gi~v~Vidl~~lkPld~e~i~~~~---------~~~~~vvvvEe~~~gG~g-------s~v~~~l~~~ 665 (722)
|++|+++|++ .||+++|+|+.|+||||++.+.... ++++.|+++|++ .||.+ +.|++.+++.
T Consensus 742 AL~AAe~L~~~~GI~a~Visv~SikpLdrd~i~~~~~~~l~~~~~~~~~~V~t~ee~-~gG~~Vtv~D~~~aVae~la~~ 820 (891)
T PRK09405 742 VLEAAEILAEDYGVAADVWSVTSFNELARDGQDVERWNMLHPTEEPRVPYVTQVLKG-AEGPVVAATDYMKLFAEQIRAF 820 (891)
T ss_pred HHHHHHHHhhhhCCCeEEEECCCCCHhhHHHHHHHHHhhcCcccccccchhhhhhcc-cCCcEEEecchHHHHHHHHHHh
Confidence 9999999998 6999999999999999999987755 566778888888 67777 8899999875
Q ss_pred CCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHhhc
Q 004946 666 GLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGR 713 (722)
Q Consensus 666 ~~~~~~~~v~~ig~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~ll~~ 713 (722)
. +.+++++|+ |.|+.+|++++++++||||+++|+++++++|..
T Consensus 821 ~----p~~~~~LGv-D~FG~SGt~~~L~~~fglda~~Iv~aal~~La~ 863 (891)
T PRK09405 821 V----PGDYVVLGT-DGFGRSDTREALRRFFEVDAEYVVVAALKALAD 863 (891)
T ss_pred C----CCCEEEEec-CCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 3 568999999 999999999999999999999999999999854
No 18
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3e-78 Score=665.64 Aligned_cols=541 Identities=23% Similarity=0.263 Sum_probs=458.6
Q ss_pred HHHHHHHHHHHHHHHHHhHhc-CCCCCCCcchHHHHHHHHhhc---cC--CC----CcEEEecCCchH---HHHHHHhCc
Q 004946 96 IKELKQLAVEIRSELSSIVSK-TEKSLKSSLAAVELTVALHHV---FH--AP----VDKILWDVGEQT---YAHKILTGR 162 (722)
Q Consensus 96 ~~~l~~la~eiR~~ii~~~~~-~gGh~~~slg~vel~~aL~~v---f~--~p----~D~iv~d~GH~~---y~h~~ltGr 162 (722)
.+.++++++.||-..++++.+ ++||+|.++|++++...||.- || +| |||||+|.||.+ |+...|+|.
T Consensus 3 ~~~~~~~~naiR~Ls~davqkAnSGHPG~pmG~A~ia~~L~~~~l~~nP~nP~W~nRDRFVLSaGHgSmllYsllhl~Gy 82 (663)
T COG0021 3 MKIDKLLANAIRFLSMDAVQKANSGHPGAPMGAADIAYVLWTRFLKHNPDNPKWINRDRFVLSAGHGSMLLYSLLHLTGY 82 (663)
T ss_pred chHHHHHHHHHHHHHHHHHHhccCCCCCCCccHHHHHHHHHHHHhcCCCCCCCCCCCccEEecCCchhHHHHHHHHHccC
Confidence 456788999999999999985 799999999999999999853 33 34 899999999998 999999997
Q ss_pred ---hhhhhHHHhhCC-CCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCC----------CCeEEEEecCCCccc
Q 004946 163 ---RSLIHTLRKKDG-ISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGK----------RECIVTVISNGTTMA 228 (722)
Q Consensus 163 ---~~~~~~~r~~gg-l~g~~~~~es~~d~~~~G~~G~~ls~A~G~A~A~~l~~~----------~~~Vv~viGDGa~~~ 228 (722)
.+++..|||+++ .+|||.....++.+..||++|+||+.|+|||+|.+.... |+.++|++|||+++|
T Consensus 83 ~ls~edLk~FRQ~~SkTpGHPE~~~t~GVe~TTGPLGQGianAVGmAlAe~~La~~fn~~g~~ivdh~tYvl~GDGclmE 162 (663)
T COG0021 83 DLSLEDLKNFRQLGSKTPGHPEYGHTPGVEATTGPLGQGLANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVGDGCLME 162 (663)
T ss_pred CCCHHHHHhhccCCCCCCCCCCcCCCCCeEeccCccchhHHHHHHHHHHHHHHHhhhCCCCCccccceEEEEecCchHhc
Confidence 678999999996 789999888888889999999999999999999885532 469999999999999
Q ss_pred chHHHHHHHhhhcC-CCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHH
Q 004946 229 GQAYEAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAA 307 (722)
Q Consensus 229 G~~~EAln~A~~~~-~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~ 307 (722)
|+++||...|++++ .+||+|.++|+.+ + +..+...
T Consensus 163 Gvs~EA~slAG~l~L~kLIvlyD~N~Is-i-------DG~~~~~------------------------------------ 198 (663)
T COG0021 163 GVSHEAASLAGHLKLGKLIVLYDSNDIS-I-------DGDTSLS------------------------------------ 198 (663)
T ss_pred ccHHHHHHHHhhcCCCcEEEEEeCCCce-e-------ccCcccc------------------------------------
Confidence 99999999999999 8899999999973 2 3222210
Q ss_pred HHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEEEEEeeccCCCcccccccchhhccCC
Q 004946 308 KVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEG 387 (722)
Q Consensus 308 ~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kG~G~~~ae~~~~~~~~H~~ 387 (722)
++.+...+||++||+++.++||||++++.+++++|+.. .++|++|+|+|+.|+|.+..|. ..++||.
T Consensus 199 ---------f~ed~~~RfeAyGW~vi~~~DG~D~e~I~~Ai~~Ak~~-~dkPtlI~~kTiIG~Gsp~keg---t~~~HGa 265 (663)
T COG0021 199 ---------FTEDVAKRFEAYGWNVIRVIDGHDLEAIDKAIEEAKAS-TDKPTLIIVKTIIGKGSPNKEG---THKVHGA 265 (663)
T ss_pred ---------cchhHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHhc-CCCCeEEEEEeeeecCCCCcCC---CccccCC
Confidence 01122568999999999999999999999999999985 5799999999999999988775 8999998
Q ss_pred CCC--------------------------------CCCCCCC--------------------------------------
Q 004946 388 ASD--------------------------------SNSLPFG-------------------------------------- 397 (722)
Q Consensus 388 ~~~--------------------------------~tg~~~~-------------------------------------- 397 (722)
++- ..|+...
T Consensus 266 pLg~~ev~~~k~~lgw~~~~F~vp~ev~~~~~~~~~~g~~~~~~W~~~~~~y~~~~Pe~~~~~~r~~~~~~p~~~~~~~~ 345 (663)
T COG0021 266 PLGEEEVAAAKKALGWEPEPFEVPEEVYAAFRAVEERGAKAEAAWNELFAAYKKKYPELAAEFERRLNGELPANWAAFLP 345 (663)
T ss_pred CCCHHHHHHHHHHhCCCCCceecCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhChHHHHHHHHHhcccCchhHHHhhh
Confidence 860 0110000
Q ss_pred -----CCccchHHHHHHHHHHHHhcCCCEEEEecCCCCccch-----HHHH-HhCCCceeecccchHHHHHHHHHHhcCC
Q 004946 398 -----NYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL-----QLFQ-EKFPERYFDVGMAEQHAVTFSAGLACGG 466 (722)
Q Consensus 398 -----~~~~s~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~l-----~~f~-~~~p~R~~d~GIaE~~av~~AaGlA~~G 466 (722)
......|++..++|..+....|+++..+||+.+|+.+ ..|. +.|++|++.+||+|++|.++++|||+.|
T Consensus 346 ~~~~~~~~~ATR~as~~~L~~l~~~~p~l~GGSADLa~Sn~T~~~~~~~~~~~~~~gr~i~~GVREf~M~AimNGialhG 425 (663)
T COG0021 346 KFEANGKSIATRKASGKALNALAKKLPELIGGSADLAPSNLTKISGSGDFSPENYAGRYIHFGVREFAMAAIMNGIALHG 425 (663)
T ss_pred hhcccccccchHHHHHHHHHHHHhhCccccccCcccccCccccccccCCCCCCCCCCCeeEEeeHHHHHHHHHHhHHHhc
Confidence 0113568889999999999999999999999998765 3444 6778999999999999999999999986
Q ss_pred -CeeEEEecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCc-cCCCCCCcCcHHHHHHhcCCCCcEEEeeCCHHHHHHHHH
Q 004946 467 -LKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVA 544 (722)
Q Consensus 467 -~~p~~~t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~ 544 (722)
++||.+||..|..|+..++ +.+|+|++|++++.+|.++ +|+||||||++++++.+|.|||+.|+.|+|+.|...+++
T Consensus 426 g~~pyggTFlvFsdY~r~Ai-RlaALm~l~~~~V~THDSIgvGEDGPTHqPiEqLa~LRaiPN~~V~RPaD~~Et~~aw~ 504 (663)
T COG0021 426 GFIPYGGTFLVFSDYARPAV-RLAALMGLPVIYVFTHDSIGVGEDGPTHQPVEQLASLRAIPNLSVIRPADANETAAAWK 504 (663)
T ss_pred CceeecceehhhHhhhhHHH-HHHHhcCCCeEEEEecCceecCCCCCCCCcHHHHHHhhccCCceeEecCChHHHHHHHH
Confidence 6999999999999999776 7889999999999999999 899999999999999999999999999999999999999
Q ss_pred HHhhhCCCCEEEEecCCCcccccCCCCCCCCcccccc-EEEEEe----CCcEEEEEechhhHHHHHHHHHHHhcCCcEEE
Q 004946 545 TVASIDDRPVCFRYPRGAIVRTDLPGYRGIPIEEIGK-GKVLVE----GKDVALLGYGAMVQNCLKARALLSKLGIDVTV 619 (722)
Q Consensus 545 ~a~~~~~~Pv~ir~~r~~~~~~~~p~~~~~~~~~igk-~~vl~e----G~dv~lva~Gs~v~~aleAa~~L~~~Gi~v~V 619 (722)
.|+.+.++|+++.++|++++.. +.. ..+.+.| ++++++ +.|++||++||.|..|++|++.|+++|++++|
T Consensus 505 ~Al~~~~gPt~LiltRQnlp~l--~~t---~~~~~~kGaYvl~~~~~~~pd~iliAtGSEV~lAv~Aa~~L~~~~~~vrV 579 (663)
T COG0021 505 YALERKDGPTALILTRQNLPVL--ERT---DLEGVAKGAYVLKDSGGEDPDVILIATGSEVELAVEAAKELEAEGIKVRV 579 (663)
T ss_pred HHHhcCCCCeEEEEecCCCCcc--CCC---ccccccCccEEEeecCCCCCCEEEEecccHHHHHHHHHHHHHhcCCceEE
Confidence 9999889999999999996543 221 1213344 578887 58999999999999999999999988999999
Q ss_pred eecCccccchHHH---HHHHhcC-CCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHH
Q 004946 620 ADARFCKPLDIKL---VRELCQN-HTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLAL 695 (722)
Q Consensus 620 idl~~lkPld~e~---i~~~~~~-~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~v~~ig~~d~f~~~g~~~~l~~~ 695 (722)
|++++...|+++. -.+++.. ....|.||.+...||...+ ..+ -..+|+ ++|+.+|+.++++++
T Consensus 580 VS~P~~~~fe~Q~~~Y~~~vL~~~v~~rvaiEa~~~~~W~ky~----g~~--------g~~ig~-~~FG~Sap~~~l~~~ 646 (663)
T COG0021 580 VSMPSFELFEKQDEEYRESVLPGAVTARVAIEAGSALGWYKYV----GLD--------GAVIGM-DSFGASAPGDELFKE 646 (663)
T ss_pred EeccchHHHHcCCHHHHHhhccCCccceEEEEeccccchhhhc----CCC--------CcEEee-ccCcCCCCHHHHHHH
Confidence 9999999998743 3344433 3347889999988998543 222 235776 899999999999999
Q ss_pred cCCCHHHHHHHHHHHhh
Q 004946 696 AGLTGHHIAATALSLLG 712 (722)
Q Consensus 696 ~gl~~~~I~~~i~~ll~ 712 (722)
||+|++.|+++++++++
T Consensus 647 fGft~e~vv~~~~~~l~ 663 (663)
T COG0021 647 FGFTVENVVAKAKSLLN 663 (663)
T ss_pred hCCCHHHHHHHHHHhhC
Confidence 99999999999998863
No 19
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=100.00 E-value=1e-75 Score=684.71 Aligned_cols=546 Identities=18% Similarity=0.198 Sum_probs=443.3
Q ss_pred HHHHHHHHHHHHHHhHhc-CC------CCCCCcchHHHHHHHHhh-ccC-----CCCcEEEecCCchH---HHHHHHhCc
Q 004946 99 LKQLAVEIRSELSSIVSK-TE------KSLKSSLAAVELTVALHH-VFH-----APVDKILWDVGEQT---YAHKILTGR 162 (722)
Q Consensus 99 l~~la~eiR~~ii~~~~~-~g------Gh~~~slg~vel~~aL~~-vf~-----~p~D~iv~d~GH~~---y~h~~ltGr 162 (722)
.++++..+|..++.|+.+ +. ||+++++|+++++.+||. +|+ ..+| +|+++||.+ |+...+.|+
T Consensus 89 e~~i~~~iR~~a~~mv~~A~~~~~~~GGH~~s~~S~a~i~~vl~~~~~r~~~~~~~~D-~V~skGHasp~lYA~~~l~G~ 167 (896)
T PRK13012 89 EERLAAIIRWNALAMVVRANRAYGELGGHIASYASAADLFEVGFNHFFRGRDDAGGGD-LVYFQPHSAPGIYARAFLEGR 167 (896)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcccHHHHHHHHHHHHhhcCCCCCCCCCC-EEEECcchHHHHHHHHHHcCC
Confidence 456899999999999974 33 999999999999999984 554 1479 588999999 999999997
Q ss_pred --hhhhhHHHhh---CCCCCCCCCCCCC-CCCcCcCCCcchHHHHHHHHHHHH-------HcCCCCeEEEEecCCCcccc
Q 004946 163 --RSLIHTLRKK---DGISGYTSRSESE-YDPFNAGHGCNSVSAGLGMAVARD-------IKGKRECIVTVISNGTTMAG 229 (722)
Q Consensus 163 --~~~~~~~r~~---ggl~g~~~~~es~-~d~~~~G~~G~~ls~A~G~A~A~~-------l~~~~~~Vv~viGDGa~~~G 229 (722)
.+++.+|||. +|+++||++...| +..|.||++|.|++.|+|+|++.| ....+++|+|++|||+++||
T Consensus 168 l~~e~L~~fR~~~~~~gl~~~P~p~~~p~~~e~~TGSlG~G~~~ai~~A~~~ryl~~~g~~~~~~~~v~~~lGDGEl~Eg 247 (896)
T PRK13012 168 LSEEQLDHFRQEIGGPGLSSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQHRGLKDTSGRKVWGFFGDGEMDEP 247 (896)
T ss_pred CCHHHHHHhcCCCCCCCCCCCCCcCCCCCCEecCCCCchHHHHHHHHHHHhcccccccccccCCCCeEEEEEchhhhccH
Confidence 7789999998 4689999876544 678999999999999999999988 34567999999999999999
Q ss_pred hHHHHHHHhhhcC-CCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHH
Q 004946 230 QAYEAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAK 308 (722)
Q Consensus 230 ~~~EAln~A~~~~-~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~ 308 (722)
.+|||+..|++++ .||++|+|+|+++ .+.++-...+. +.
T Consensus 248 ~~~eA~~~A~~~~LdNLi~ivD~N~~~--------lDG~v~~~~~~---------------------------~~----- 287 (896)
T PRK13012 248 ESIAALSLAAREGLDNLVFVINCNLQR--------LDGPVRGNGRI---------------------------IQ----- 287 (896)
T ss_pred HHHHHHHHHHHhCCCcEEEEEECCCcc--------ccCcccccccc---------------------------ch-----
Confidence 9999999999999 8999999999983 22232211000 00
Q ss_pred HHHHhhcccCCChhhhHhhcCceEEeec-------------------------C--------------------------
Q 004946 309 VDEYARGMIGPQGSTLFEELGLYYIGPV-------------------------D-------------------------- 337 (722)
Q Consensus 309 ~~~~~~~~~~~~~~~lfea~G~~~~~~v-------------------------d-------------------------- 337 (722)
+...+|+++||+++.++ |
T Consensus 288 -----------~l~~~f~a~GW~Vi~v~wg~~wd~l~~~d~~~~l~~~~~~~~Dg~yq~~~~~~g~~~r~~ff~~~~~~~ 356 (896)
T PRK13012 288 -----------ELEALFRGAGWNVIKVLWGSDWDALFARDTTGALVRRFAETVDGQFQTFKANDGAYNREHFFGQDPELA 356 (896)
T ss_pred -----------HHHHHHHhCCCEEEEEecccchHHHhcCCCccHHHHHHHhCCcHHHHHHhhcchHHHHHHhccccHHHH
Confidence 11457888999988543 8
Q ss_pred -----------------CCCHHHHHHHHHHHHhcCCCCCEEEEEEeeccCCCccc-ccccchhhccCCCC----------
Q 004946 338 -----------------GHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDT-QKSEAIEKQQEGAS---------- 389 (722)
Q Consensus 338 -----------------Ghd~~~l~~al~~a~~~~~~~P~lI~v~T~kG~G~~~a-e~~~~~~~~H~~~~---------- 389 (722)
|||+++|.+|++++++. .++|++|.++|+||+|.+.+ | +..++|+..+
T Consensus 357 ~lv~~~~d~~i~~l~rgGHD~~~i~~A~~~a~~~-~~~PtvIla~TvkG~G~~~~~e---~~~~~H~~~~l~~e~~~~~r 432 (896)
T PRK13012 357 ALVAHLSDEDIDRLKRGGHDPRKVYAAYAAAVRH-KGQPTVILAKTKKGYGMGEAGE---GRMTTHQQKKLDVEALKAFR 432 (896)
T ss_pred HHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhC-CCCCEEEEEEeeecCCCCcccC---CCcccccCCCCCHHHHHHHH
Confidence 99999999999988864 46899999999999999844 5 4778887322
Q ss_pred -----CCC-----------------------------C-C-C--------CC---------------CCccchHHHHHHH
Q 004946 390 -----DSN-----------------------------S-L-P--------FG---------------NYSRTYDDCFIEA 410 (722)
Q Consensus 390 -----~~t-----------------------------g-~-~--------~~---------------~~~~s~~~a~~~~ 410 (722)
+.+ + . + ++ ....+.+++|++.
T Consensus 433 ~~~g~p~~d~~~~~~pf~~p~~~~~~~~~l~~r~~~l~g~~P~r~~~~~~l~~p~~~~~~~~~~~~~~~~isTr~Afgr~ 512 (896)
T PRK13012 433 DRFRLPLSDEQLEQLPFYKPAEDSPEMRYLHARRAALGGYLPRRRTAAPPLPVPPLSAFAQFALGAGGKEMSTTMAFVRM 512 (896)
T ss_pred HHcCCCCChhhhccCCCcCCccccHHHHHHHHHHHHhcCcCCcccccccccCCCchhhHHHhhcccCCCcchHHHHHHHH
Confidence 000 0 0 0 00 1234678999999
Q ss_pred HHHHHhc---CCCEEEEecCCCCccch-------------------------HHHHHhCCCceeecccchHHHHH--HHH
Q 004946 411 LVMEAEK---DKDIVVVHAGMEMDLSL-------------------------QLFQEKFPERYFDVGMAEQHAVT--FSA 460 (722)
Q Consensus 411 L~~~~~~---d~~iv~i~ad~~~~~~l-------------------------~~f~~~~p~R~~d~GIaE~~av~--~Aa 460 (722)
|.++++. .++||.+++|+..++|+ ..|+++||+|||++||+|++|++ +|+
T Consensus 513 L~~L~k~~~~~~~iV~i~aDla~t~gm~~~f~~~~i~~~~gq~y~~~d~~~~~~yke~~pgR~ie~GIaEqnm~~~~~AA 592 (896)
T PRK13012 513 LGNLLKDKALGPRIVPIVADEARTFGMANLFRQVGIYSPLGQLYEPEDAGSLLYYREAKDGQILEEGITEAGAISSWIAA 592 (896)
T ss_pred HHHHHhccccCCCEEEeccccccccCcccccccccccccccccccccchhHHhhhhhCCCCcEEecchhhhhhhHHHHHH
Confidence 9999987 89999999999988866 23557889999999999999999 899
Q ss_pred HHhcC----CCeeEEEecHhh-HHHHHHHHHHHHhcCCCCEEEEEeCCCc-cCCCCCCcCcHHHHHHhcCCCCcEEEeeC
Q 004946 461 GLACG----GLKPFCIIPSAF-LQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPS 534 (722)
Q Consensus 461 GlA~~----G~~p~~~t~~~F-l~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~d~a~~~~iP~l~V~~Ps 534 (722)
|+|++ |++||+.+|++| ++|++||++..++++..+|+++.+++|+ +|++|+|||..+|++++|.+||++||.|+
T Consensus 593 G~a~a~~G~g~iPf~~tfs~F~~~R~~Dqir~a~~~~~~~vlig~T~gg~tlg~dG~THQ~~eslal~RaIPN~~V~~PA 672 (896)
T PRK13012 593 ATSYSVHGLPMLPFYIYYSMFGFQRVGDLIWAAADQRARGFLLGATAGRTTLGGEGLQHQDGHSHLLASTIPNCRAYDPA 672 (896)
T ss_pred HhhHHhcCCCcEEEEEehHHHHHHHHHHHHHHHHhcccCCeEEEEeCcccccCCCCCCCcchHhHHHHHhCCCCEEEeCC
Confidence 99887 679999999999 7999999999999999999999999998 79999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhh-----CCCCEEEEecCCCcccccCCCCCCCCccccccE-EEEE---eCCcEEEEEechhhHHHHH
Q 004946 535 DEDELVDMVATVASI-----DDRPVCFRYPRGAIVRTDLPGYRGIPIEEIGKG-KVLV---EGKDVALLGYGAMVQNCLK 605 (722)
Q Consensus 535 d~~E~~~~l~~a~~~-----~~~Pv~ir~~r~~~~~~~~p~~~~~~~~~igk~-~vl~---eG~dv~lva~Gs~v~~ale 605 (722)
|+.|+..+++.++.+ .+.|+|||+.|++.....+|.. ... .+.++ ++++ +|++++|+++|+++++|++
T Consensus 673 Da~E~a~iv~~al~~m~~~~~~~p~YIrL~r~~~~~p~~~~~--~~~-~i~kG~y~l~~~~~g~dv~LiasGs~v~eAl~ 749 (896)
T PRK13012 673 FAYELAVIVDDGMRRMLEEQEDVFYYLTVMNENYAQPALPEG--AEE-GILKGMYRLAAAAEAPRVQLLGSGAILREVLA 749 (896)
T ss_pred CHHHHHHHHHHHHHHHHhccCCCeEEEEecCCCCCCCCCCcc--chh-ccccCcEEEeccCCCCCEEEEEecHHHHHHHH
Confidence 999999999998743 2579999999987543223322 122 34444 5563 3679999999999999999
Q ss_pred HHHHHHhc-CCcEEEeecCccccchHHHHH-------------------HHhcC-CCeEEEEcCCCCCChHHHHHHHHHh
Q 004946 606 ARALLSKL-GIDVTVADARFCKPLDIKLVR-------------------ELCQN-HTFLITVEEGSIGGFGSHVSHFIAL 664 (722)
Q Consensus 606 Aa~~L~~~-Gi~v~Vidl~~lkPld~e~i~-------------------~~~~~-~~~vvvvEe~~~gG~gs~v~~~l~~ 664 (722)
|+++|+++ ||+++|+|+.|++|||++.+. +.+.. ...+|+++++.. .|++.+.+
T Consensus 750 AAe~L~~e~GI~a~V~sv~S~kpLd~d~i~~E~hn~~gglg~~~~sy~~~~l~~~~~p~Va~~D~~~-----aVae~l~~ 824 (896)
T PRK13012 750 AARLLADDWGVDADVWSVTSFTELRRDGLAAERANLLGPAEEARVPYVTQCLAGTRGPVVAATDYVR-----AVPEQIRA 824 (896)
T ss_pred HHHHHHhhhCCCeEEEECCCCCHhHHHHHHHHHHhhcCCCccccccHHHHhhcccCCCeEEecchHH-----HHHHHHHH
Confidence 99999999 999999999999999999772 22222 234555555432 45555554
Q ss_pred cCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHhhc
Q 004946 665 DGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGR 713 (722)
Q Consensus 665 ~~~~~~~~~v~~ig~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~ll~~ 713 (722)
.. +.+++++|+ |.|+.+|++++++++||+|+++|+++++++|..
T Consensus 825 ~~----~~~~~~LGv-D~FG~Sg~~~~L~~~fGlda~~Iv~aal~~La~ 868 (896)
T PRK13012 825 FV----PARYVTLGT-DGFGRSDTRAALRRFFEVDRHSIVLAALKALAD 868 (896)
T ss_pred hC----CCCeEEEee-CCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 32 457889998 999999999999999999999999999999864
No 20
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=100.00 E-value=1.1e-77 Score=606.04 Aligned_cols=270 Identities=53% Similarity=0.853 Sum_probs=199.8
Q ss_pred ccCCCCchhccCCCHHHHHHHHHHHHHHHHHhHhcCCCCCCCcchHHHHHHHHhhccCCCCcEEEecCCchHHHHHHHhC
Q 004946 82 LDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTG 161 (722)
Q Consensus 82 l~~i~~p~~~~~l~~~~l~~la~eiR~~ii~~~~~~gGh~~~slg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltG 161 (722)
|++|++|.|||+|+.+||++||+|||++|++.++++|||++||||+|||++|||||||.|+|+||||+|||+|+||||||
T Consensus 1 L~~I~~p~dlk~ls~~eL~~La~eiR~~ii~~vs~~GGHl~snLGvVELTiALH~vFd~p~DkivwDvGHQ~Y~HKiLTG 80 (270)
T PF13292_consen 1 LDKINSPEDLKKLSIEELEQLAQEIREFIIETVSKTGGHLASNLGVVELTIALHYVFDSPKDKIVWDVGHQAYVHKILTG 80 (270)
T ss_dssp GGG-SSHHHHTTS-GGGHHHHHHHHHHHHHHHCTCCCSTHHHHHCCHHHHHHHHHHS-TTTSEEEESSSTT-HHHHHCTT
T ss_pred CCCCCCHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccHHHHHHHHHHHhCCCCCeEEEecccccchhhhccC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhc
Q 004946 162 RRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYL 241 (722)
Q Consensus 162 r~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~ 241 (722)
|++.|.|+||+||++|||+|.||+||.|++||+|++||+|+|||.|+++++++++||||||||+|+.||+|||||+|+..
T Consensus 81 R~~~f~TlRq~gGlSGF~~r~ES~~D~f~~GHsstsiSaa~Gma~ar~l~~~~~~vVaVIGDGalt~Gma~EALN~~g~~ 160 (270)
T PF13292_consen 81 RRDRFHTLRQYGGLSGFPKRSESEYDAFGAGHSSTSISAALGMAVARDLKGEDRKVVAVIGDGALTGGMAFEALNNAGHL 160 (270)
T ss_dssp TCCCGGGTTSTTS--SS--TTT-TT--S--SSSS-HHHHHHHHHHHHHHHTS---EEEEEETTGGGSHHHHHHHHHHHHH
T ss_pred cHHHhchhhhcCCcCCCCCcccCCCCcccCCccHhHHHHHHHHHHHHHhcCCCCcEEEEECCcchhHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCCh
Q 004946 242 DSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQG 321 (722)
Q Consensus 242 ~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~ 321 (722)
+.||+||+|||+|+ |++++|++++||+++++++.|+++|+..+.+.+.+ .++....+++++.++.+ .+
T Consensus 161 ~~~liVILNDN~mS--------Is~nvGals~~L~~l~~~~~y~~~k~~~~~~l~~~-~~~~~~~~r~~~s~K~~-~~-- 228 (270)
T PF13292_consen 161 KSNLIVILNDNEMS--------ISPNVGALSKYLSKLRSSPTYNKLKEDVKSLLKKI-PPIEEFAKRIKESLKGF-SP-- 228 (270)
T ss_dssp T-SEEEEEEE-SBS--------SSB--SSHCCC-----------------------------------------------
T ss_pred CCCEEEEEeCCCcc--------cCCCcchHHHHHHhccchhHHHHHHHHHHHHHHhh-hHHHHHHHHHhhhhhhh-hH--
Confidence 99999999999994 78999999999999999999999999999999877 67788888999999887 43
Q ss_pred hhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEEEEEe
Q 004946 322 STLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVT 366 (722)
Q Consensus 322 ~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T 366 (722)
.+||++||+|+||+||||+++|+++|+++|+. ++|++|||.|
T Consensus 229 -~lFe~LG~~Y~GPiDGHdl~~Li~~l~~~K~~--~gPvllHV~T 270 (270)
T PF13292_consen 229 -NLFEELGFDYIGPIDGHDLEELIEVLENAKDI--DGPVLLHVIT 270 (270)
T ss_dssp -CCCHHCT-EEEEEEETT-HHHHHHHHHHHCCS--SSEEEEEEE-
T ss_pred -HHHHHcCCeEEeccCCCCHHHHHHHHHHHhcC--CCCEEEEEeC
Confidence 79999999999999999999999999999995 8999999998
No 21
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.6e-68 Score=538.54 Aligned_cols=304 Identities=35% Similarity=0.554 Sum_probs=288.8
Q ss_pred ccchHHHHHHHHHHHHhcCCCEEEEecCCCCccchHHHHHhCCCceeecccchHHHHHHHHHHhcCCCeeEEEecHhhHH
Q 004946 400 SRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQ 479 (722)
Q Consensus 400 ~~s~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f~~~~p~R~~d~GIaE~~av~~AaGlA~~G~~p~~~t~~~Fl~ 479 (722)
..+++++|+++|.++.++|++||++++|+.+|+++..|.++||+||||+||+||.|+++|+|+|++|++||+++|+.|+.
T Consensus 6 ~~~~R~~~g~~L~~l~~~~~diVvl~ADl~~St~~~~f~~~fPdR~~NvGIaEQ~mvg~AAGLA~~Gk~Pfv~tfa~F~s 85 (312)
T COG3958 6 TESLRKVYGETLAELGRKNSDIVVLDADLSSSTKTGYFAKEFPDRFFNVGIAEQDMVGTAAGLALAGKKPFVSTFAAFLS 85 (312)
T ss_pred chHHHHHHHHHHHHHHhcCCCEEEEecccccccchhHHHHhCchhheecchHHHHHHHHHHHHHhcCCCceeechHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred -HHHHHHHHHHhcCCCCEEEEEeCCCc-cCCCCCCcCcHHHHHHhcCCCCcEEEeeCCHHHHHHHHHHHhhhCCCCEEEE
Q 004946 480 -RAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFR 557 (722)
Q Consensus 480 -ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~~~~Pv~ir 557 (722)
|+||||.+++|++++||.++++++|+ +|+||+|||..+|+++||.+||++|++|+|+.|.+.++.++.+ .++|+|+|
T Consensus 86 ~Ra~EQir~~iay~~lnVKiv~t~~G~t~g~dG~sHq~~EDiaimR~lpn~~V~~P~D~v~~~~i~~~~~~-~~GP~Y~R 164 (312)
T COG3958 86 RRAWEQIRNSIAYNNLNVKIVATHAGVTYGEDGSSHQALEDIAIMRGLPNMTVIAPADAVETRAILDQIAD-YKGPVYMR 164 (312)
T ss_pred HHHHHHHHHHhhhccCCeEEEEecCCcccCCCCccchhHHHHHHHhcCCCceEEccCcHHHHHHHHHHHHh-cCCCEEEE
Confidence 99999999999999999999999999 7999999999999999999999999999999999999999976 68999999
Q ss_pred ecCCCcccccCCCCCCCCccccccEEEEEeCCcEEEEEechhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHh
Q 004946 558 YPRGAIVRTDLPGYRGIPIEEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELC 637 (722)
Q Consensus 558 ~~r~~~~~~~~p~~~~~~~~~igk~~vl~eG~dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~ 637 (722)
+.|...+.. ++. .++.| ++||++++|+|+|++||++|.|+..+++||+.|+++||++.|||+.+|||+|++++.+.+
T Consensus 165 l~R~~~p~~-~~~-~~~~F-~iGka~vLrdG~D~tiiA~G~mv~~al~AA~~L~~~GIsa~Vi~m~tIKPiD~~~i~~~A 241 (312)
T COG3958 165 LGRGKVPVV-VDE-GGYTF-EIGKANVLRDGSDLTIIATGVMVAEALEAAEILKKEGISAAVINMFTIKPIDEQAILKAA 241 (312)
T ss_pred ecCCCCCce-ecC-CCceE-eccceeEeecCCceEEEecCcchHHHHHHHHHHHhcCCCEEEEecCccCCCCHHHHHHHH
Confidence 999764422 222 24778 999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHh
Q 004946 638 QNHTFLITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLL 711 (722)
Q Consensus 638 ~~~~~vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~v~~ig~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~ll 711 (722)
++++.|||+|||+ .||+|+.|++.+++++ +.+++++|+||.|+.+|+.++++++||||+++|++++++++
T Consensus 242 ~~t~~IvT~EeHsi~GGlGsaVAEvlse~~----p~~~~riGvp~~fg~sg~~~~Ll~~ygl~~~~I~~~v~~~~ 312 (312)
T COG3958 242 RETGRIVTAEEHSIIGGLGSAVAEVLSENG----PTPMRRIGVPDTFGRSGKADELLDYYGLDPESIAARVLELL 312 (312)
T ss_pred hhcCcEEEEecceeecchhHHHHHHHHhcC----CcceEEecCCchhccccchHHHHHHhCCCHHHHHHHHHhhC
Confidence 9999999999998 6999999999999987 67899999999999999999999999999999999998864
No 22
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=100.00 E-value=1.8e-59 Score=503.80 Aligned_cols=306 Identities=19% Similarity=0.282 Sum_probs=269.0
Q ss_pred ccchHHHHHHHHHHHHhcCCCEEEEecCCCCccc----hHHHHHhCCC-ceeecccchHHHHHHHHHHhcCCCeeEEEe-
Q 004946 400 SRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLS----LQLFQEKFPE-RYFDVGMAEQHAVTFSAGLACGGLKPFCII- 473 (722)
Q Consensus 400 ~~s~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~----l~~f~~~~p~-R~~d~GIaE~~av~~AaGlA~~G~~p~~~t- 473 (722)
..+++++|+++|.+++++||+++++++|++.++| +++|+++||+ ||||+||+||+|+++|+|||++|+|||+++
T Consensus 3 ~~~~~~a~~~~L~~~~~~dp~iv~l~~d~~~~~g~~~~~~~f~~~fp~~R~~n~gIaEq~~vg~AaGlA~~G~~pvv~~~ 82 (327)
T CHL00144 3 EVFLFEALREAIDEEMARDPRVFVIGEDVGHYGGSYKVTKGLHEKYGDLRVLDTPIAENSFTGMAIGAAMTGLRPIVEGM 82 (327)
T ss_pred cchHHHHHHHHHHHHHhhCCCEEEEeCcccccCCchhHHHHHHHHCCCccEeeccccHHHHHHHHHHHHHCCCEEEEEee
Confidence 3688999999999999999999999999975555 6899999999 999999999999999999999999999986
Q ss_pred cHhhHHHHHHHHHHHHhcC--------CCCEEEEEeCCCccC-CCCCCcCcHHHHHHhcCCCCcEEEeeCCHHHHHHHHH
Q 004946 474 PSAFLQRAYDQVVNDVDQQ--------RLPVRFVITSAGLVG-SDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVA 544 (722)
Q Consensus 474 ~~~Fl~ra~dqi~~~~a~~--------~lpVv~v~~~~G~~G-~dG~TH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~ 544 (722)
|+.|++|+||||+|++|++ ++||+++ ++|+.| .+|+|||+..+ ++|+++|||+|++|+|+.|++.+++
T Consensus 83 ~~~f~~ra~dQi~~~~a~~~~~~gg~~~~~vv~~--~~g~~~~~~G~tHs~~~e-a~~~~iPgl~V~~Psd~~d~~~~l~ 159 (327)
T CHL00144 83 NMGFLLLAFNQISNNAGMLHYTSGGNFTIPIVIR--GPGGVGRQLGAEHSQRLE-SYFQSVPGLQIVACSTPYNAKGLLK 159 (327)
T ss_pred hhhHHHHHHHHHHHHHHHHhhccCCCccCCEEEE--ecCCCCCCCCccccccHH-HHHhcCCCCEEEEeCCHHHHHHHHH
Confidence 6788999999999999988 4566665 566644 79999977776 9999999999999999999999999
Q ss_pred HHhhhCCCCEEEEecCCCcc-cccCCCCCCCCccccccEEEEEeCCcEEEEEechhhHHHHHHHHHHHhcCCcEEEeecC
Q 004946 545 TVASIDDRPVCFRYPRGAIV-RTDLPGYRGIPIEEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADAR 623 (722)
Q Consensus 545 ~a~~~~~~Pv~ir~~r~~~~-~~~~p~~~~~~~~~igk~~vl~eG~dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~ 623 (722)
+|++ .++|+|||+++.... ...++. +.+.+ ++||+.++++|+|++||++|.|++.|++|++.|+++||+++|||++
T Consensus 160 ~a~~-~~~Pv~ire~~~l~~~~~~v~~-~~~~~-~~Gk~~v~~~G~ditiia~G~~v~~al~Aa~~L~~~Gi~~~VId~~ 236 (327)
T CHL00144 160 SAIR-SNNPVIFFEHVLLYNLKEEIPD-NEYLL-PLEKAEVVRPGNDITILTYSRMRHHVLQAVKVLVEKGYDPEIIDLI 236 (327)
T ss_pred HHHh-CCCcEEEEEcHHhcCCCCCCCC-CCccc-cCCeeEEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEecC
Confidence 9986 689999996655422 112332 24567 8999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHhcCCCeEEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCcccc-CCCHHHHHHHcCCCHH
Q 004946 624 FCKPLDIKLVRELCQNHTFLITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIE-HASPTQQLALAGLTGH 701 (722)
Q Consensus 624 ~lkPld~e~i~~~~~~~~~vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~v~~ig~~d~f~~-~g~~~~l~~~~gl~~~ 701 (722)
|+||||+++|.++++++++|||+|||. .||||++|++++.+++|...+.+++++|++|.|++ +|+.++ .+|||++
T Consensus 237 ~ikPlD~~~i~~~~~~t~~vv~vEE~~~~gGlG~~va~~l~e~~f~~~~~pv~rl~~~d~~~~~~~~~~~---~~gl~~~ 313 (327)
T CHL00144 237 SLKPLDLGTISKSVKKTHKVLIVEECMKTGGIGAELIAQINEHLFDELDAPIVRLSSQDVPTPYNGPLEE---ATVIQPA 313 (327)
T ss_pred cCCCCCHHHHHHHHHhhCcEEEEECCCCCCCHHHHHHHHHHHhchhhcCCCeEEEccCCCcCCCCccHHH---HhCCCHH
Confidence 999999999999999999999999998 79999999999999985323568999999999999 566554 4599999
Q ss_pred HHHHHHHHHhhcc
Q 004946 702 HIAATALSLLGRT 714 (722)
Q Consensus 702 ~I~~~i~~ll~~~ 714 (722)
+|++++++++..+
T Consensus 314 ~I~~~i~~~l~~~ 326 (327)
T CHL00144 314 QIIEAVEQIITNK 326 (327)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999998654
No 23
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=100.00 E-value=1.9e-58 Score=496.72 Aligned_cols=306 Identities=25% Similarity=0.358 Sum_probs=273.6
Q ss_pred ccchHHHHHHHHHHHHhcCCCEEEEecCCCCccc----hHHHHHhC-CCceeecccchHHHHHHHHHHhcCCCeeEEEec
Q 004946 400 SRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLS----LQLFQEKF-PERYFDVGMAEQHAVTFSAGLACGGLKPFCIIP 474 (722)
Q Consensus 400 ~~s~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~----l~~f~~~~-p~R~~d~GIaE~~av~~AaGlA~~G~~p~~~t~ 474 (722)
..+|+++|+++|.+++++||+++++++|++.++| +++|+++| |+||||+|||||+|+++|+|||++|+|||+++|
T Consensus 3 ~~~~~~a~~~~L~~~~~~d~~iv~l~~d~~~~~g~~~~~~~~~~~fgp~R~~d~gIaE~~~vg~AaGlA~~G~~Piv~~~ 82 (327)
T PRK09212 3 QLTVREALRDAMQEEMERDPKVFLMGEEVGEYQGAYKVTQGLLEQFGPKRVIDTPITEHGFAGLAVGAAFAGLRPIVEFM 82 (327)
T ss_pred cchHHHHHHHHHHHHHHhCCCEEEEcCcccccCCcchhhHHHHHHhCCCceeecchhHHHHHHHHHHHHHcCCeeEEEee
Confidence 4589999999999999999999999999987676 38999999 999999999999999999999999999999998
Q ss_pred H-hhHHHHHHHHHHHHhcC--------CCCEEEEEeCCCccCCCCCCcCcHHHHHHhcCCCCcEEEeeCCHHHHHHHHHH
Q 004946 475 S-AFLQRAYDQVVNDVDQQ--------RLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVAT 545 (722)
Q Consensus 475 ~-~Fl~ra~dqi~~~~a~~--------~lpVv~v~~~~G~~G~dG~TH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~ 545 (722)
+ .|++||||||+|++|++ ++|++++..+ |..|.+|+|||+..+ ++||++|||+|++|+|+.|++.++++
T Consensus 83 ~~~f~~ra~dQi~~d~a~~~~~~~~~~~v~vv~~~~~-g~~~~~G~tH~~~~e-a~~r~iP~l~V~~P~d~~e~~~~l~~ 160 (327)
T PRK09212 83 TFNFSMQAIDQIVNSAAKTNYMSGGQLKCPIVFRGPN-GAAARVAAQHSQCYA-AWYSHIPGLKVVAPYFAADCKGLLKT 160 (327)
T ss_pred hhhHHHHHHHHHHHHHHHHhhccCCCcCccEEEEeCC-CCCCCCCcccccCHH-HHHhcCCCCEEEeeCCHHHHHHHHHH
Confidence 7 78999999999999998 4667766544 447889999988888 99999999999999999999999999
Q ss_pred HhhhCCCCEEEEecCCCcccc-cCCCCCCCCccccccEEEEEeCCcEEEEEechhhHHHHHHHHHHHhcCCcEEEeecCc
Q 004946 546 VASIDDRPVCFRYPRGAIVRT-DLPGYRGIPIEEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARF 624 (722)
Q Consensus 546 a~~~~~~Pv~ir~~r~~~~~~-~~p~~~~~~~~~igk~~vl~eG~dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~ 624 (722)
|++ .++|++|++++...... +++. +.+++ ++||++++++|+|++||+||+++..|++|++.|+++|++++|||++|
T Consensus 161 a~~-~~~Pv~i~~~~~~~~~~~~~~~-~~~~~-~~Gk~~vl~~G~di~iva~G~~~~~a~eAa~~L~~~Gi~v~vi~~~~ 237 (327)
T PRK09212 161 AIR-DPNPVIFLENEILYGHSHEVPE-EEESI-PIGKAAILREGSDVTIVTFSIQVKLALEAAELLEKEGISVEVIDLRT 237 (327)
T ss_pred HHh-CCCcEEEEEchhhcCCCCCCCC-CCccc-cCCeeEEEEeCCCEEEEEccHHHHHHHHHHHHHHhcCCcEEEEEEec
Confidence 986 58999998876543211 2232 23567 89999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHhcCCCeEEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCC-CHHH
Q 004946 625 CKPLDIKLVRELCQNHTFLITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGL-TGHH 702 (722)
Q Consensus 625 lkPld~e~i~~~~~~~~~vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~v~~ig~~d~f~~~g~~~~l~~~~gl-~~~~ 702 (722)
++|||++.+.++++++++||||||+. .||||++|++++.++++.....++++++.+|.|++.| ++++++|| ++++
T Consensus 238 l~Pld~~~i~~~~~~~~~vv~vEe~~~~gGlg~~la~~l~~~~~~~~~~~i~r~~~~~~~~~~~---~~le~~~l~~~~~ 314 (327)
T PRK09212 238 LRPLDTETIIESVKKTNRLVVVEEGWPFAGVGAEIAALIMKEAFDYLDAPVERVTGKDVPLPYA---ANLEKLALPSEED 314 (327)
T ss_pred CCCCCHHHHHHHHHhCCeEEEEcCCCCCCCHHHHHHHHHHHhCccccCCCeEEEcCCCccCCch---HHHHHhcCCCHHH
Confidence 99999999999999999999999998 7999999999999987644456899999999998865 79999998 9999
Q ss_pred HHHHHHHHhhc
Q 004946 703 IAATALSLLGR 713 (722)
Q Consensus 703 I~~~i~~ll~~ 713 (722)
|++++++++++
T Consensus 315 I~~~i~~~~~~ 325 (327)
T PRK09212 315 IIEAVKKVCYR 325 (327)
T ss_pred HHHHHHHHHhh
Confidence 99999998853
No 24
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=100.00 E-value=9e-58 Score=495.13 Aligned_cols=309 Identities=24% Similarity=0.328 Sum_probs=270.3
Q ss_pred CccchHHHHHHHHHHHHhcCCCEEEEecCCCCccc----hHHHHHhC-CCceeecccchHHHHHHHHHHhcCCCeeEEEe
Q 004946 399 YSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLS----LQLFQEKF-PERYFDVGMAEQHAVTFSAGLACGGLKPFCII 473 (722)
Q Consensus 399 ~~~s~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~----l~~f~~~~-p~R~~d~GIaE~~av~~AaGlA~~G~~p~~~t 473 (722)
+..+|+++|+++|.+++++||+++++++|++.+.+ +++|.++| |+||||+|||||+|+++|+|||++|+|||+++
T Consensus 25 ~~~~~~~a~~~aL~e~~~~d~~iv~i~~D~~~~~g~~~~~~~l~~~~~P~R~~d~GIAEq~~vg~AaGlA~~G~~P~v~~ 104 (356)
T PLN02683 25 KEMTVRDALNSALDEEMSADPKVFIMGEEVGEYQGAYKITKGLLQKYGPDRVLDTPITEAGFTGIGVGAAYAGLKPVVEF 104 (356)
T ss_pred cccHHHHHHHHHHHHHHhhCcCEEEEccccccccCccchhhhHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEEEE
Confidence 34689999999999999999999999999976555 56777777 99999999999999999999999999999998
Q ss_pred -cHhhHHHHHHHHHHHHhcCC--------CCEEEEEeCCCccCCCCCCcCcHHHHHHhcCCCCcEEEeeCCHHHHHHHHH
Q 004946 474 -PSAFLQRAYDQVVNDVDQQR--------LPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVA 544 (722)
Q Consensus 474 -~~~Fl~ra~dqi~~~~a~~~--------lpVv~v~~~~G~~G~dG~TH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~ 544 (722)
++.|++|+||||+|++|+++ +||++++.+++..| +|+|||+.+ +++||++|||+|++|+|+.|++.+++
T Consensus 105 ~~~~f~~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~G~~~g-~G~tH~~~~-~a~lr~iPnl~V~~Pad~~e~~~~l~ 182 (356)
T PLN02683 105 MTFNFSMQAIDHIINSAAKTNYMSAGQISVPIVFRGPNGAAAG-VGAQHSQCF-AAWYSSVPGLKVLAPYSSEDARGLLK 182 (356)
T ss_pred ehhhHHHHHHHHHHHHHHHhccccCCCccCCEEEEEeCCCCCC-CCCccccCH-HHHHhcCCCCEEEEeCCHHHHHHHHH
Confidence 57789999999999999988 99999998844355 699999888 59999999999999999999999999
Q ss_pred HHhhhCCCCEEEEecCCCcccc-cCCC---CCCCCccccccEEEEEeCCcEEEEEechhhHHHHHHHHHHHhcCCcEEEe
Q 004946 545 TVASIDDRPVCFRYPRGAIVRT-DLPG---YRGIPIEEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVA 620 (722)
Q Consensus 545 ~a~~~~~~Pv~ir~~r~~~~~~-~~p~---~~~~~~~~igk~~vl~eG~dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vi 620 (722)
+|++ .++|++||+++...... +... ..++.+ ++||++++++|+|++||++|++++.|++|++.|+++||+++||
T Consensus 183 ~a~~-~~gPv~ir~~~~~~~~~~~~~~~~~~~~~~~-~~Gk~~v~r~G~dvtIia~G~~v~~Al~Aa~~L~~~GI~v~VI 260 (356)
T PLN02683 183 AAIR-DPDPVVFLENELLYGESFPVSAEVLDSSFVL-PIGKAKIEREGKDVTIVAFSKMVGYALKAAEILAKEGISAEVI 260 (356)
T ss_pred HHHh-CCCcEEEEEehhhccCCCCCCCCCCCccccc-cCCeeEEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEE
Confidence 9985 67899999754331110 1111 113456 7899999999999999999999999999999999999999999
Q ss_pred ecCccccchHHHHHHHhcCCCeEEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCC-
Q 004946 621 DARFCKPLDIKLVRELCQNHTFLITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGL- 698 (722)
Q Consensus 621 dl~~lkPld~e~i~~~~~~~~~vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~v~~ig~~d~f~~~g~~~~l~~~~gl- 698 (722)
|++|+||||+++|.++++++++|||+|||. .||||++|++++.+++|...+.+++++|++|.+++ ....++++++
T Consensus 261 d~~~ikPlD~~~l~~~~~~t~~vvtvEE~~~~GGlGs~Va~~l~e~~f~~~~~~v~rlg~~d~~~p---~~~~le~~~~p 337 (356)
T PLN02683 261 NLRSIRPLDRDTINASVRKTNRLVTVEEGWPQHGVGAEICASVVEESFDYLDAPVERIAGADVPMP---YAANLERLALP 337 (356)
T ss_pred ECCCCCccCHHHHHHHHhhcCeEEEEeCCCcCCCHHHHHHHHHHHhchhccCCCeEEeccCCcCCC---ccHHHHHhhCC
Confidence 999999999999999999999999999998 79999999999999986323568999999998655 4567888887
Q ss_pred CHHHHHHHHHHHhhcc
Q 004946 699 TGHHIAATALSLLGRT 714 (722)
Q Consensus 699 ~~~~I~~~i~~ll~~~ 714 (722)
++++|++++++++.++
T Consensus 338 ~~~~i~~a~~~~~~~~ 353 (356)
T PLN02683 338 QVEDIVRAAKRACYRS 353 (356)
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999999654
No 25
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=100.00 E-value=6.3e-56 Score=509.44 Aligned_cols=546 Identities=16% Similarity=0.195 Sum_probs=421.2
Q ss_pred HHHHHHHHHHHHHHhHhc-C------CCCCCCcchHHHHHHHHhh-ccCC-C----CcEEEecCCchH---HHHHHHhCc
Q 004946 99 LKQLAVEIRSELSSIVSK-T------EKSLKSSLAAVELTVALHH-VFHA-P----VDKILWDVGEQT---YAHKILTGR 162 (722)
Q Consensus 99 l~~la~eiR~~ii~~~~~-~------gGh~~~slg~vel~~aL~~-vf~~-p----~D~iv~d~GH~~---y~h~~ltGr 162 (722)
.++++..+|..++.|+.+ + +||+++++|+++++.+||+ +|+. | +| +|+++||.+ |+...+.|+
T Consensus 75 e~~i~~~iR~~ai~MV~~A~~~~~~vgGHigsslS~adIl~vLy~~~lr~~~~~~~rD-~VlSKGHasp~lYA~L~l~G~ 153 (885)
T TIGR00759 75 ERRIRSIIRWNAIAMVLRANKKDLGLGGHISTYASAATLYEVGFNHFFRGHSEGGGGD-LVFFQGHAAPGIYARAFLEGR 153 (885)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCCCcCCcHHHHHHHHHHHHHhcCCCCCCCCCC-EEEECCcHHHHHHHHHHHcCC
Confidence 456678999999999974 4 6999999999999999994 5652 2 78 588999999 999999997
Q ss_pred --hhhhhHHHhh---CCCCCCCCCCCCC-CCCcCcCCCcchHHHHHHHHHHHHH-------cCCCCeEEEEecCCCcccc
Q 004946 163 --RSLIHTLRKK---DGISGYTSRSESE-YDPFNAGHGCNSVSAGLGMAVARDI-------KGKRECIVTVISNGTTMAG 229 (722)
Q Consensus 163 --~~~~~~~r~~---ggl~g~~~~~es~-~d~~~~G~~G~~ls~A~G~A~A~~l-------~~~~~~Vv~viGDGa~~~G 229 (722)
.+++.+||+. +++++||++...+ +..|+||++|+|++.|+|+|++.|+ +..+++|+|++|||+++||
T Consensus 154 ls~e~L~~FRq~~~g~gL~shPhp~~~p~~ve~sTGSLG~Gls~AvG~Ala~Kyl~~rg~~~~~~~rVyvllGDGEldEG 233 (885)
T TIGR00759 154 LTEEQLDNFRQEVQGDGLSSYPHPWLMPDFWQFPTVSMGLGPINAIYQARFMKYLENRGLKDTGDQKVWAFLGDGEMDEP 233 (885)
T ss_pred CCHHHHHHhcCCCCCCCCCCCCCcCcCCCCEEeCCCCccHHHHHHHHHHHHHHHHHhhccCCCCCceEEEEEcchhhccH
Confidence 7789999993 5699999876533 4789999999999999999999986 5678999999999999999
Q ss_pred hHHHHHHHhhhcC-CCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHH
Q 004946 230 QAYEAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAK 308 (722)
Q Consensus 230 ~~~EAln~A~~~~-~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~ 308 (722)
.+|||+..|++++ .||++|+|+|+++ + +.++......+++
T Consensus 234 ~swEA~~~Aa~~kLdNLi~IVD~N~~q-l-------DG~v~~~~~i~e~------------------------------- 274 (885)
T TIGR00759 234 ESKGAITFAAREKLDNLTFVINCNLQR-L-------DGPVRGNGKIIQE------------------------------- 274 (885)
T ss_pred HHHHHHHHHHHhCCCCEEEEEeCCCCc-c-------CCccccccccchh-------------------------------
Confidence 9999999999999 7999999999984 2 2222211100111
Q ss_pred HHHHhhcccCCChhhhHhhcCceEEee-----------------------------------------------------
Q 004946 309 VDEYARGMIGPQGSTLFEELGLYYIGP----------------------------------------------------- 335 (722)
Q Consensus 309 ~~~~~~~~~~~~~~~lfea~G~~~~~~----------------------------------------------------- 335 (722)
...+|+++||+++.+
T Consensus 275 ------------le~~F~a~GW~Vi~V~wg~~wd~lf~~d~~g~L~~~m~~~~dg~yq~~~~~~Ga~~R~~ffg~~~~l~ 342 (885)
T TIGR00759 275 ------------LESLFRGAGWNVIKVLWGSEWDALLARDTSGVLVKLMNETVDGDYQTYKAKDGAYVREHFFNRTPELK 342 (885)
T ss_pred ------------HHHHHHhcCCEEEEEecCccchHhhcCCCccHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHH
Confidence 123455555555532
Q ss_pred ---------------cCCCCHHHHHHHHHHHHhcCCCCCEEEEEEeeccCCCcccccccchhhccCCCC-----------
Q 004946 336 ---------------VDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGAS----------- 389 (722)
Q Consensus 336 ---------------vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kG~G~~~ae~~~~~~~~H~~~~----------- 389 (722)
.+|||+++|.+|++++++. .++|++|.++|+||+|.+.+.+ +..++|+..+
T Consensus 343 ~lv~~~sD~~i~~l~rgGHD~~~I~~A~~~A~~~-~grPTvIlA~TvKG~G~~~~~e--~~n~~H~~k~l~~e~l~~~r~ 419 (885)
T TIGR00759 343 ALVADMSDADIWALNRGGHDPRKVYAAYAAAQEH-KGQPTVILAKTIKGYGMGDAAE--SRNTAHQVKKLEVDALKNFRD 419 (885)
T ss_pred HHhhccchhhhhhccCCCCCHHHHHHHHHHHHhC-CCCCEEEEEeeeecCCCChhhC--CCcccccCCCCCHHHHHHHHH
Confidence 2799999999999888764 3589999999999999984433 4788998532
Q ss_pred ----C--------------CC---------------C----------CC--CC-------------CCccchHHHHHHHH
Q 004946 390 ----D--------------SN---------------S----------LP--FG-------------NYSRTYDDCFIEAL 411 (722)
Q Consensus 390 ----~--------------~t---------------g----------~~--~~-------------~~~~s~~~a~~~~L 411 (722)
+ +. | .+ ++ .+..|.+.+|++.|
T Consensus 420 ~~g~~~~d~~~~~~~~~~~~~~s~e~~y~~~rr~~Lgg~~p~R~~~~~~l~vP~l~~~~~~~~~~~~~~~STt~afvr~l 499 (885)
T TIGR00759 420 RFELPLSDAQVEELPYYHPGEGSPEVRYLLARRQALGGYLPARRTFAEHLTVPALEFFGALLKGSGEREVSTTMAFVRIL 499 (885)
T ss_pred HcCCCCChhHhccCCCcCCCCCCHHHHHHHHHHHHhCCCCCCcCCCCCCCCCCCchhhHHHhcCCCCCCccHHHHHHHHH
Confidence 0 00 0 00 00 13467889999999
Q ss_pred HHHHhcC---CCEEEEecCCCCccchHHHHHhC-------------------------CCceeecccchHHHHH--HHHH
Q 004946 412 VMEAEKD---KDIVVVHAGMEMDLSLQLFQEKF-------------------------PERYFDVGMAEQHAVT--FSAG 461 (722)
Q Consensus 412 ~~~~~~d---~~iv~i~ad~~~~~~l~~f~~~~-------------------------p~R~~d~GIaE~~av~--~AaG 461 (722)
..+++.. ++||-|.+|...++|++++.++. .+|+++.||+|.++++ +|+|
T Consensus 500 ~~L~r~~~~g~riVpi~pDeartfgm~g~f~~~gIy~~~gq~y~p~d~~~~~~y~e~~~Gq~le~GI~E~g~~~~~~aag 579 (885)
T TIGR00759 500 NKLLKDKEIGKRIVPIVPDEARTFGMEGLFRQIGIYSPHGQTYTPVDADSLLAYKESKDGQILQEGINEAGAMASWIAAA 579 (885)
T ss_pred HHHhcCcccccceeecCCCccccCChHHhhcccCccCCCCccCCccchhhhhhcccCCCCcchhhhhhhHHHHHHHHHHH
Confidence 9888753 57999999999999998776531 3799999999999998 4777
Q ss_pred HhcC--C--CeeEEEecHhh-HHHHHHHHHHHHhcCCCCEEEEEeCCCc--cCCCCCCcCcHHHHHHhcCCCCcEEEeeC
Q 004946 462 LACG--G--LKPFCIIPSAF-LQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDITFMSCLPNMIVMAPS 534 (722)
Q Consensus 462 lA~~--G--~~p~~~t~~~F-l~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~d~a~~~~iP~l~V~~Ps 534 (722)
.|.+ | +.||...|++| +||..|.+ ..+|.|+..-.+++..+|. ....|-+||...-..+...+||++-|.|+
T Consensus 580 tsys~~g~~miP~yi~YsmFgfqR~gD~~-waa~d~~argfl~g~taGrtTL~gEGlqHqdg~s~~~~~~~P~~~~ydPa 658 (885)
T TIGR00759 580 TSYATHGEPMIPFYIYYSMFGFQRIGDLC-WAAADQRARGFLLGATAGRTTLNGEGLQHEDGHSLLQAATIPNCIAYDPA 658 (885)
T ss_pred hHHhhCCCeeeeeeEeeccccccchHHHH-HHHhhhcCCceEeccCCCcccCCCccccCccccchHHHhcCCCceeecCc
Confidence 7765 5 78999999999 99999965 6889999999999988888 24568899987777778889999999999
Q ss_pred CHHHHHHHHHHHhhh---CCCCEEEEecCCC--cccccCCCCCCCCccccccE-EEEEe------CCcEEEEEechhhHH
Q 004946 535 DEDELVDMVATVASI---DDRPVCFRYPRGA--IVRTDLPGYRGIPIEEIGKG-KVLVE------GKDVALLGYGAMVQN 602 (722)
Q Consensus 535 d~~E~~~~l~~a~~~---~~~Pv~ir~~r~~--~~~~~~p~~~~~~~~~igk~-~vl~e------G~dv~lva~Gs~v~~ 602 (722)
.+.|+..++..++.+ ...-++.+++.-+ ......|. +. .+.+-|+ +.+++ +.+|.|+++|+.+++
T Consensus 659 fa~Ela~i~~~g~~rm~~~~~~v~yylt~~ne~~~qp~~p~--~~-~egIlkG~Y~l~~~~~~~~~~~VqLlgSG~il~e 735 (885)
T TIGR00759 659 FAYEVAVIMEDGLRRMYGEQEDVFYYVTVMNENYVQPPMPE--GA-EEGILKGLYRFETSTEEKAKGHVQLLGSGAIMRA 735 (885)
T ss_pred hHHHHHHHHHHHHHHHhhCCCCEEEEEEecCCCCCCCCCCc--ch-HHhHHhCceecccCCCCCCCccEEEEeccHHHHH
Confidence 999999999999874 3457788877633 22211221 11 1134444 55654 247999999999999
Q ss_pred HHHHHHHHHhc-CCcEEEeecCccccchHHHH-------------------HHHhc-CCCeEEEEcCCCCCChHHHHHHH
Q 004946 603 CLKARALLSKL-GIDVTVADARFCKPLDIKLV-------------------RELCQ-NHTFLITVEEGSIGGFGSHVSHF 661 (722)
Q Consensus 603 aleAa~~L~~~-Gi~v~Vidl~~lkPld~e~i-------------------~~~~~-~~~~vvvvEe~~~gG~gs~v~~~ 661 (722)
|++|+++|+++ |+.++|+++.+..-|..+.. .+.+. ....||++-+... -+...|..+
T Consensus 736 vl~Aa~lL~~~~gV~adVwSvTS~~eL~Rd~~~~eR~n~lhP~~~~r~~~v~~~L~~~~gP~va~tDy~~-~~~~qir~~ 814 (885)
T TIGR00759 736 VIEAAQLLAADWGVASDVWSVTSFTELARDGHDVERWNLLHPTETPRVSYVAQVLNEADAPVIASTDYVR-AFAEQIRPY 814 (885)
T ss_pred HHHHHHHHHHHHCCCCcEEECCCHHHHHHhHHHHHHHHhcCCCCCccccHHHHHhccCCCCEEEEccchh-hhHHHHhhh
Confidence 99999999986 99999999999887766533 12222 2347787777641 123333332
Q ss_pred HHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHhhc
Q 004946 662 IALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGR 713 (722)
Q Consensus 662 l~~~~~~~~~~~v~~ig~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~ll~~ 713 (722)
+ +.++..+|. |.|+.+++.+++.++|++|++.|+.++++.|..
T Consensus 815 v--------p~~~~~LGt-DgFGrSdtr~~lr~~fevDa~~IV~AAL~aL~~ 857 (885)
T TIGR00759 815 V--------PRKYVTLGT-DGFGRSDTRENLRHFFEVDAKSVVLAALYALAD 857 (885)
T ss_pred c--------CCCceEecC-CCCCCCCCHHHHHHHcCCCHHHHHHHHHHHHhh
Confidence 2 457788896 999999999999999999999999999998854
No 26
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=100.00 E-value=1e-56 Score=499.77 Aligned_cols=306 Identities=23% Similarity=0.302 Sum_probs=272.5
Q ss_pred CccchHHHHHHHHHHHHhcCCCEEEEecCCCCccc----hHHHHHhC-CCceeecccchHHHHHHHHHHhcCCCeeEEEe
Q 004946 399 YSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLS----LQLFQEKF-PERYFDVGMAEQHAVTFSAGLACGGLKPFCII 473 (722)
Q Consensus 399 ~~~s~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~----l~~f~~~~-p~R~~d~GIaE~~av~~AaGlA~~G~~p~~~t 473 (722)
...+++++|+++|.+++++|++++++++|++.+.| ..+|.++| |+||||+||+||+|+++|+|||++|+|||+++
T Consensus 140 ~~~~~r~a~~~al~~~~~~d~~vv~i~~Dv~~~~ga~~~t~~l~~~fgp~R~id~gIaEq~~vg~AaGlA~~G~rPiv~~ 219 (464)
T PRK11892 140 VTMTVREALRDAMAEEMRRDEDVFVMGEEVAEYQGAYKVTQGLLQEFGARRVIDTPITEHGFAGIGVGAAFAGLKPIVEF 219 (464)
T ss_pred cchHHHHHHHHHHHHHHhhCcCEEEEeCCccccCCccccchHHHHHhCccceeecCccHHHHHHHHHHHHhCCCEEEEEE
Confidence 34689999999999999999999999999987666 47899999 99999999999999999999999999999998
Q ss_pred c-HhhHHHHHHHHHHHHh--------cCCCCEEEEEeCCCccCCCCCCcCcHHHHHHhcCCCCcEEEeeCCHHHHHHHHH
Q 004946 474 P-SAFLQRAYDQVVNDVD--------QQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVA 544 (722)
Q Consensus 474 ~-~~Fl~ra~dqi~~~~a--------~~~lpVv~v~~~~G~~G~dG~TH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~ 544 (722)
+ +.|++|+||||+|++| ++++||+|++..+|..+ .|+ ||+.+|+++|+++|||+|++|+|+.|++.+++
T Consensus 220 ~~~~f~~ra~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~~-~G~-hhs~~d~a~~~~iPgl~V~~P~d~~d~~~ll~ 297 (464)
T PRK11892 220 MTFNFAMQAIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAAR-VAA-QHSQDYAAWYSHIPGLKVVAPYSAADAKGLLK 297 (464)
T ss_pred ehHHHHHHHHHHHHHHHhHHhhhcCCccCCCEEEEecCCCCCC-CCC-ccccCHHHHHhhCCCCEEEEeCCHHHHHHHHH
Confidence 5 7788999999999999 89999999988776544 677 99999999999999999999999999999999
Q ss_pred HHhhhCCCCEEEEecCCCccc-ccCCCCCCCCccccccEEEEEeCCcEEEEEechhhHHHHHHHHHHHhcCCcEEEeecC
Q 004946 545 TVASIDDRPVCFRYPRGAIVR-TDLPGYRGIPIEEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADAR 623 (722)
Q Consensus 545 ~a~~~~~~Pv~ir~~r~~~~~-~~~p~~~~~~~~~igk~~vl~eG~dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~ 623 (722)
+|++ .++|+||+.++..... ..+|...++.+ ++||++++|+|+|++||++|.++..|++|++.|+++||+++|||++
T Consensus 298 ~ai~-~~~Pv~ile~~~ry~~~~~vp~~~~~~~-~~Gka~v~r~G~DvtIva~G~~v~~Al~Aa~~L~~~GI~~~VIdl~ 375 (464)
T PRK11892 298 AAIR-DPNPVIFLENEILYGQSFDVPKLDDFVL-PIGKARIHREGKDVTIVSFSIGMTYALKAAEELAKEGIDAEVIDLR 375 (464)
T ss_pred HHhh-CCCcEEEEechhhcCCCCCCCCcCCccc-cCceEEEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 9986 6899999543322111 12332224566 8999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHhcCCCeEEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCC-CHH
Q 004946 624 FCKPLDIKLVRELCQNHTFLITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGL-TGH 701 (722)
Q Consensus 624 ~lkPld~e~i~~~~~~~~~vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~v~~ig~~d~f~~~g~~~~l~~~~gl-~~~ 701 (722)
||||||.++|.++++++++|||+|||+ .||||++|++++.+++|...+.+++++|++|.|.+ ++.++++++| +++
T Consensus 376 tlkPlD~~~i~~sv~kt~~vvtvEE~~~~gGlG~~va~~l~e~~f~~l~~pv~ri~~~d~~~~---~~~~le~~~l~~~~ 452 (464)
T PRK11892 376 TIRPMDTETIVESVKKTNRLVTVEEGWPQSGVGAEIAARVMEQAFDYLDAPVLRVTGKDVPMP---YAANLEKLALPSVA 452 (464)
T ss_pred CCCcCCHHHHHHHHHhcCeEEEEeCCCcCCcHHHHHHHHHHHhCccccCCCeEEeccCCccCC---cHHHHHHhcCCCHH
Confidence 999999999999999999999999998 79999999999999986333568999999999986 5789999998 999
Q ss_pred HHHHHHHHHh
Q 004946 702 HIAATALSLL 711 (722)
Q Consensus 702 ~I~~~i~~ll 711 (722)
+|++++++++
T Consensus 453 ~Iv~av~~~~ 462 (464)
T PRK11892 453 EVVEAVKAVC 462 (464)
T ss_pred HHHHHHHHHh
Confidence 9999999875
No 27
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=100.00 E-value=7.1e-56 Score=480.13 Aligned_cols=307 Identities=25% Similarity=0.373 Sum_probs=269.5
Q ss_pred CccchHHHHHHHHHHHHhcCCCEEEEecCCC---Cccc-hHHHHHhC-CCceeecccchHHHHHHHHHHhcCCCeeEEEe
Q 004946 399 YSRTYDDCFIEALVMEAEKDKDIVVVHAGME---MDLS-LQLFQEKF-PERYFDVGMAEQHAVTFSAGLACGGLKPFCII 473 (722)
Q Consensus 399 ~~~s~~~a~~~~L~~~~~~d~~iv~i~ad~~---~~~~-l~~f~~~~-p~R~~d~GIaE~~av~~AaGlA~~G~~p~~~t 473 (722)
...+|+++|+++|.+++++||+++++++|++ +.++ +++|+++| |+||||+||+||+|+++|+|||++|+|||+++
T Consensus 33 ~~~~~~~~~~~~L~~~~~~d~~iv~l~~D~~~~G~~~~~~~~f~~~fgP~R~id~GIaEq~~vg~AaGlA~~G~~Pvv~~ 112 (355)
T PTZ00182 33 VKMNVREAINSALDEELARDPKVFVLGEDVAQYGGVYKCTKGLLDKYGPDRVFDTPITEQGFAGFAIGAAMNGLRPIAEF 112 (355)
T ss_pred cchHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCchhhhHHHHHHhCCCceeecCccHHHHHHHHHHHHhCCCEEEEEe
Confidence 3468999999999999999999999999997 2133 68999999 99999999999999999999999999999998
Q ss_pred -cHhhHHHHHHHHHHHHhcC--------CCCEEEEEeCCCccCCCCCCcCcHHHHHHhcCCCCcEEEeeCCHHHHHHHHH
Q 004946 474 -PSAFLQRAYDQVVNDVDQQ--------RLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVA 544 (722)
Q Consensus 474 -~~~Fl~ra~dqi~~~~a~~--------~lpVv~v~~~~G~~G~dG~TH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~ 544 (722)
|++|++|++|||+|++|++ ++|++++. ++|.+|.+|+||++..+ ++|+++|||+|++|+|+.|++.+++
T Consensus 113 ~fa~Fl~ra~dQi~~d~a~~~~~~~g~~~v~vv~~~-~~g~~g~~G~tHs~~~e-a~lr~iPn~~V~~Psd~~e~~~~l~ 190 (355)
T PTZ00182 113 MFADFIFPAFDQIVNEAAKYRYMSGGQFDCPIVIRG-PNGAVGHGGAYHSQSFE-AYFAHVPGLKVVAPSDPEDAKGLLK 190 (355)
T ss_pred chhhHHHHHHHHHHHHHHHhhcccCCCccCCEEEEe-CCCCCCCCCCcccchHH-HHHhcCCCCEEEeeCCHHHHHHHHH
Confidence 8999999999999999986 56666663 44457899999977777 9999999999999999999999999
Q ss_pred HHhhhCCCCEEEEecCCCccc-ccCCCCCCCCccccccEEEEEeCCcEEEEEechhhHHHHHHHHHHHhcCCcEEEeecC
Q 004946 545 TVASIDDRPVCFRYPRGAIVR-TDLPGYRGIPIEEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADAR 623 (722)
Q Consensus 545 ~a~~~~~~Pv~ir~~r~~~~~-~~~p~~~~~~~~~igk~~vl~eG~dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~ 623 (722)
++++ .++|+||++|+..... .+......+.+ ++||++++++|+|++||+||+++..|++|++.|+++|++++|||++
T Consensus 191 ~a~~-~~~P~~i~~p~~l~r~~~~~~~~~~~~~-~~Gk~~vl~~G~di~Iia~Gs~~~~aleAa~~L~~~Gi~v~vI~~~ 268 (355)
T PTZ00182 191 AAIR-DPNPVVFFEPKLLYRESVEVVPEADYTL-PLGKAKVVREGKDVTIVGYGSQVHVALKAAEELAKEGISCEVIDLR 268 (355)
T ss_pred HHHh-CCCcEEEEeehHHhCCCCCCCCcccccc-cCCcceEecCCCCEEEEEeCHHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence 9987 5899999988764221 11111123566 8899999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHhcCCCeEEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHH
Q 004946 624 FCKPLDIKLVRELCQNHTFLITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHH 702 (722)
Q Consensus 624 ~lkPld~e~i~~~~~~~~~vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~v~~ig~~d~f~~~g~~~~l~~~~gl~~~~ 702 (722)
+++|||++.|.+++++++.||||||+. .||||++|++++.++++...+.+++++|++|.|++++.. +.+.+.+++++
T Consensus 269 ~l~Pld~e~i~~~~~~~~~IvvvEE~~~~GGlG~~Va~~l~e~~~~~l~~pv~ri~~~d~~~p~~~~--le~~~~~~~~~ 346 (355)
T PTZ00182 269 SLRPWDRETIVKSVKKTGRCVIVHEAPPTCGIGAEIAAQIMEDCFLYLEAPIKRVCGADTPFPYAKN--LEPAYLPDKEK 346 (355)
T ss_pred eCCCCCHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHhhhhhcCCCeEEeCCCCccCCCChH--HHHHhCCCHHH
Confidence 999999999999999999999999998 799999999999998753235689999999999988654 66778999999
Q ss_pred HHHHHHHHh
Q 004946 703 IAATALSLL 711 (722)
Q Consensus 703 I~~~i~~ll 711 (722)
|++++.+++
T Consensus 347 i~~~~~~~~ 355 (355)
T PTZ00182 347 VVEAAKRVL 355 (355)
T ss_pred HHHHHHHhC
Confidence 999998864
No 28
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
Probab=100.00 E-value=3.2e-52 Score=424.64 Aligned_cols=305 Identities=26% Similarity=0.399 Sum_probs=272.0
Q ss_pred cchHHHHHHHHHHHHhcCCCEEEEecCCCCc---cch-HHHHHhCCC-ceeecccchHHHHHHHHHHhcCCCeeEEEe-c
Q 004946 401 RTYDDCFIEALVMEAEKDKDIVVVHAGMEMD---LSL-QLFQEKFPE-RYFDVGMAEQHAVTFSAGLACGGLKPFCII-P 474 (722)
Q Consensus 401 ~s~~~a~~~~L~~~~~~d~~iv~i~ad~~~~---~~l-~~f~~~~p~-R~~d~GIaE~~av~~AaGlA~~G~~p~~~t-~ 474 (722)
.++++|++++|.++|++|++++++++|++-. ++. .+|+++|++ |+||++|+|.+.+|+|.|||+.|+||++++ |
T Consensus 2 ~~~~eAi~~Am~~eM~rD~~V~v~GEDVg~~GGvf~~T~GL~~kfG~~RV~DTPiaE~gi~G~avGaA~~GlrPivEiqf 81 (324)
T COG0022 2 MTMIEAINEAMDEEMERDERVVVLGEDVGVYGGVFRVTKGLQEKFGEERVIDTPIAESGIAGIAVGAALTGLRPIVEIQF 81 (324)
T ss_pred ccHHHHHHHHHHHHHhcCCCEEEEcccccccCChhhhchhHHHHhCccceecCccchhhhHHHHHHHHHcCCcceEEEEe
Confidence 5789999999999999999999999998732 333 789999975 999999999999999999999999999998 9
Q ss_pred HhhHHHHHHHHHHHHhcC--------CCCEEEEEeCCCccCCCCCCcCcHHHHHHhcCCCCcEEEeeCCHHHHHHHHHHH
Q 004946 475 SAFLQRAYDQVVNDVDQQ--------RLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATV 546 (722)
Q Consensus 475 ~~Fl~ra~dqi~~~~a~~--------~lpVv~v~~~~G~~G~dG~TH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~a 546 (722)
..|+..|+|||+|++++. .+|+++....+|..+ .|.+|++..+ +++.++|||+|++|+||.|++++|+.|
T Consensus 82 ~dF~~~a~dqi~n~aAk~ryrsgG~~~~PiviR~p~G~g~~-~~~~HSqs~e-a~f~h~PGlKVV~PStpyDAKGLL~aA 159 (324)
T COG0022 82 ADFIYPAFDQIVNQAAKIRYRSGGQFTVPIVIRTPNGGGIG-GGAQHSQSLE-ALFAHIPGLKVVMPSTPYDAKGLLKAA 159 (324)
T ss_pred cchhHHHHHHHHHHHHHHhhhcCCceeCCEEEEcCCCCCCC-chhhccCCHH-HHHhcCCCceEEecCChHHHHHHHHHH
Confidence 999999999999999863 689999987665444 4789999988 899999999999999999999999999
Q ss_pred hhhCCCCEEEEecCCCcc--cccCCCCCCCCccccccEEEEEeCCcEEEEEechhhHHHHHHHHHHHhcCCcEEEeecCc
Q 004946 547 ASIDDRPVCFRYPRGAIV--RTDLPGYRGIPIEEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARF 624 (722)
Q Consensus 547 ~~~~~~Pv~ir~~r~~~~--~~~~p~~~~~~~~~igk~~vl~eG~dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~ 624 (722)
++ +++||+|+.++.... ..++|+ .++.+ ++||+.+.|+|+|+|||+||.|++.+++||++|+++||+++|||+|+
T Consensus 160 Ir-d~dPViflE~k~lY~~~~~eVP~-~~Y~i-PlGkA~i~reG~DvTivtyg~mv~~al~AAe~l~~~Gis~EVIDLRT 236 (324)
T COG0022 160 IR-DPDPVIFLEHKRLYRSFKGEVPE-EDYTI-PLGKAKIVREGSDVTIVTYGAMVHTALEAAEELEKEGISAEVIDLRT 236 (324)
T ss_pred hc-CCCCEEEEecHHHhcccccCCCC-CCccc-cccceeeEecCCceEEEEechHHHHHHHHHHHHhhcCCCeEEEeccc
Confidence 86 899999999986532 346775 36778 99999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHhcCCCeEEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHH
Q 004946 625 CKPLDIKLVRELCQNHTFLITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHI 703 (722)
Q Consensus 625 lkPld~e~i~~~~~~~~~vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~v~~ig~~d~f~~~g~~~~l~~~~gl~~~~I 703 (722)
|+|||.++|.++++|++++++|||.. ++|+|++|++.+.+++|.....++.|++.+|.+.+... .+.+.+-.+++.|
T Consensus 237 l~PlD~etIi~SvkKTgR~viV~Ea~~~~g~gaei~A~i~e~~f~~LdAPi~Rv~g~d~P~p~~~--~lE~~~lp~~~~I 314 (324)
T COG0022 237 LSPLDKETIIASVKKTGRLVIVHEAPKTGGIGAEIAALIAEEAFDYLDAPILRVAGPDTPVPYSA--ALEKAYLPNPERI 314 (324)
T ss_pred cCccCHHHHHHHHHhhCcEEEEEeccccCChHHHHHHHHHHHHHHhhcCchhhhcCCCCCCCcch--hHHhhhCCCHHHH
Confidence 99999999999999999999999987 79999999999999988777889999999999886533 2334455699999
Q ss_pred HHHHHHHhh
Q 004946 704 AATALSLLG 712 (722)
Q Consensus 704 ~~~i~~ll~ 712 (722)
.+++++++.
T Consensus 315 ~~av~~v~~ 323 (324)
T COG0022 315 VAAVKKVLE 323 (324)
T ss_pred HHHHHHHhh
Confidence 999999874
No 29
>PRK05261 putative phosphoketolase; Provisional
Probab=100.00 E-value=2.2e-42 Score=398.77 Aligned_cols=517 Identities=14% Similarity=0.125 Sum_probs=378.1
Q ss_pred CCCCCCcchHHHHHHHHhhccCC-CCc-EEEecCCchH---HHHHHHhCc-----------hhhhh-HHHhhC---CCCC
Q 004946 118 EKSLKSSLAAVELTVALHHVFHA-PVD-KILWDVGEQT---YAHKILTGR-----------RSLIH-TLRKKD---GISG 177 (722)
Q Consensus 118 gGh~~~slg~vel~~aL~~vf~~-p~D-~iv~d~GH~~---y~h~~ltGr-----------~~~~~-~~r~~g---gl~g 177 (722)
-||.|.+-|+..+.+.|.++-.. .-| .+|.+.||.+ |+..+|.|. .+.|. .+||++ |+.+
T Consensus 49 ~GHwGt~pgln~vyahln~li~~~~~~~~~V~g~GHg~p~~~a~~~L~Gs~~~~yp~is~d~~gl~~lfrqfs~pgg~~s 128 (785)
T PRK05261 49 LGHWGTTPGLNFIYAHLNRLIRKYDLNMIYITGPGHGGPAMVANAYLEGTYSEIYPEITQDEEGMARLFKQFSFPGGIPS 128 (785)
T ss_pred CCCCCCcHHHHHHHHHHHHHHhhcCCceEEEeCCCccHHHHHHHHHHcCCCcccCCCCCccHHHHHHHHHhccCCCCcCC
Confidence 59999999998888888765442 224 4678999988 999999992 12266 578875 4777
Q ss_pred CCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccch---HHHHHHHhhhcC-CCEEEEEECCC
Q 004946 178 YTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQ---AYEAMSNAGYLD-SNMIVILNDSR 253 (722)
Q Consensus 178 ~~~~~es~~d~~~~G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~---~~EAln~A~~~~-~plivIv~dN~ 253 (722)
||.+ +.++....+|.+|++++.|+|+|+. +++..|+|++|||+.++|. .|++.+++...+ .+++.|+++|+
T Consensus 129 H~~~-~tPGi~~~~G~LG~gls~A~G~Al~----~~d~iv~~~vGDGE~EeG~lAa~W~~~~~~~~~~~g~vLPIld~Ng 203 (785)
T PRK05261 129 HAAP-ETPGSIHEGGELGYSLSHAYGAAFD----NPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNG 203 (785)
T ss_pred CCCC-CCCCeeeCCCchhhHHHHHHHHHHc----CCCCEEEEEECcCchhhhhhHHHhhhhhhcccccCCCEEEEEEecC
Confidence 7764 6677778899999999999999964 5688999999999999998 499999998887 89999999999
Q ss_pred CC-CCCCccCCCCcchhhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceE
Q 004946 254 HS-LHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYY 332 (722)
Q Consensus 254 ~~-s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ 332 (722)
++ +.||..+. . +.. +...+|++|||..
T Consensus 204 ~~Is~pt~~~~-------~-----------------------------~~e----------------~l~~rf~g~Gw~~ 231 (785)
T PRK05261 204 YKIANPTILAR-------I-----------------------------SDE----------------ELEALFRGYGYEP 231 (785)
T ss_pred CcCCCCccccc-------c-----------------------------CcH----------------hHHHHHHHCCCee
Confidence 83 22221000 0 000 1145799999999
Q ss_pred EeecCCCCHHHHHHH--------HH-------HHHhc-CCCCCE--EEEEEeeccCCCcc------cccccchhhccCCC
Q 004946 333 IGPVDGHNIEDLISV--------LQ-------EVASL-GSMGPV--LVHVVTEENRRAED------TQKSEAIEKQQEGA 388 (722)
Q Consensus 333 ~~~vdGhd~~~l~~a--------l~-------~a~~~-~~~~P~--lI~v~T~kG~G~~~------ae~~~~~~~~H~~~ 388 (722)
+ .|||||++++.++ ++ +|+.. ...+|+ +|+++|.||+|-+. .| +..+.|+++
T Consensus 232 i-~VDG~D~~av~~a~a~al~~~i~~i~~iq~~Ar~~~~~~~P~wp~Ii~rT~kG~g~p~~~dg~~~e---Gs~raHqvP 307 (785)
T PRK05261 232 Y-FVEGDDPADMHQEMAAALDTAIEEIRAIQKEAREGGDTTRPRWPMIVLRTPKGWTGPKEVDGKPIE---GSWRAHQVP 307 (785)
T ss_pred E-EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEECCccCCCCcccCCcccC---CCchhhcCC
Confidence 8 7899999887766 44 33321 015899 99999999999652 34 467889888
Q ss_pred CCCC--------------------------CC--------------------------CCC----C--------------
Q 004946 389 SDSN--------------------------SL--------------------------PFG----N-------------- 398 (722)
Q Consensus 389 ~~~t--------------------------g~--------------------------~~~----~-------------- 398 (722)
.... |. ..+ +
T Consensus 308 L~~~~~~~~~~~~L~~wl~sy~p~elF~~~g~l~~~~~~l~p~g~~r~~~~P~ang~~~~~~l~lp~~~~~~~~~~~~g~ 387 (785)
T PRK05261 308 LANVRDNPEHLDLLEDWLRSYRPEELFDEDGRLKPELAALAPKGDRRMGANPHANGGLLLRDLRLPDFRDYAVPVGKPGA 387 (785)
T ss_pred CCCcccCHHHHHHHHHHhhcCChhhhcCCCCchhHHHHHhccCchhhhcCCchhcCCcCccccCCCchHhhcccccCCCc
Confidence 6110 00 000 0
Q ss_pred -CccchHHHHHHHHHHHHhcCCC-EEEEecCCCCccchHHHHH-----------------hCCCceeecccchHHHHHHH
Q 004946 399 -YSRTYDDCFIEALVMEAEKDKD-IVVVHAGMEMDLSLQLFQE-----------------KFPERYFDVGMAEQHAVTFS 459 (722)
Q Consensus 399 -~~~s~~~a~~~~L~~~~~~d~~-iv~i~ad~~~~~~l~~f~~-----------------~~p~R~~d~GIaE~~av~~A 459 (722)
.....+. +++.|.++++.+|+ +++++||...|+.+....+ ...+|+++ |++|++|.+++
T Consensus 388 ~~~~atr~-~g~~l~~v~~~np~~frvf~pDe~~SNrl~~~f~~t~r~~~~~~~~~d~~~~~~Grvie-~LsEh~~~g~~ 465 (785)
T PRK05261 388 VMAEATRV-LGKYLRDVIKLNPDNFRIFGPDETASNRLQAVFEVTDRQWMAEILPYDEHLAPDGRVME-VLSEHLCEGWL 465 (785)
T ss_pred cccccHHH-HHHHHHHHHHhCCCceEEEcCCcchhhccHhHHhhhccccccccCCcccccCCCCCeee-eecHHHHHHHH
Confidence 0112333 89999999999999 8999999999988754332 22379999 99999999999
Q ss_pred HHHhcCCCeeEEEecHhhH---HHHHHHHHHHHh--c-----CCCC-EEEEEeCCCc-cCCCCCCcCc---HHHHHHhcC
Q 004946 460 AGLACGGLKPFCIIPSAFL---QRAYDQVVNDVD--Q-----QRLP-VRFVITSAGL-VGSDGPTQCG---AFDITFMSC 524 (722)
Q Consensus 460 aGlA~~G~~p~~~t~~~Fl---~ra~dqi~~~~a--~-----~~lp-Vv~v~~~~G~-~G~dG~TH~~---~~d~a~~~~ 524 (722)
.|+++.|.++++++|..|+ ..++.|+....- . ..++ +.++.++... .|+||+|||. ++.++-++.
T Consensus 466 ~Gy~LtG~~~~~~sYeaF~~ivd~m~~q~~kw~r~~~~~~wr~~~~sLn~l~Ts~~~~qghNG~THQ~Pg~ie~l~~~r~ 545 (785)
T PRK05261 466 EGYLLTGRHGFFSSYEAFIHIVDSMFNQHAKWLKVAREIPWRKPIPSLNYLLTSHVWRQDHNGFSHQDPGFIDHVANKKP 545 (785)
T ss_pred HHHHhcCCCcceecHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcceeEEeecceeecCCCCCCCCCchHHHHHHhcCC
Confidence 9999999999999999998 888888733322 0 1122 4466677776 7999999999 999998888
Q ss_pred CCCcEEEeeCCHHHHHHHHHHHhhhCCCCEEEEecCCCcccccCCCCCCCCccccccEE-EEE--e-----CCcEEEEEe
Q 004946 525 LPNMIVMAPSDEDELVDMVATVASIDDRPVCFRYPRGAIVRTDLPGYRGIPIEEIGKGK-VLV--E-----GKDVALLGY 596 (722)
Q Consensus 525 iP~l~V~~Psd~~E~~~~l~~a~~~~~~Pv~ir~~r~~~~~~~~p~~~~~~~~~igk~~-vl~--e-----G~dv~lva~ 596 (722)
|++.||.|+|++|+..+++.|++..++|.+|.++|++.+.. ... ......+.+|. ++. + +.||+|+|+
T Consensus 546 -~~~rV~rPaDaNe~laa~~~al~s~~~p~~IvlsRQ~lp~~--~~~-~~a~~~~~kGayi~~~a~~~~~~~pDvvL~at 621 (785)
T PRK05261 546 -DVIRVYLPPDANTLLAVADHCLRSRNYINVIVAGKQPRPQW--LSM-DEARKHCTKGLGIWDWASNDDGEEPDVVLACA 621 (785)
T ss_pred -CcceEEeCCCHHHHHHHHHHHHHhCCCCEEEEEeCCCCccc--CCh-HHHHHhccCceEEEEeccCCCCCCCCEEEEEe
Confidence 99999999999999999999998888999999999985432 111 11011234453 444 1 369999999
Q ss_pred chhhHH-HHHHHHHHHhc--CCcEEEeecCccccc------------hHHHHHHHhcCCCeEEEEcCCCCCChHHHHHHH
Q 004946 597 GAMVQN-CLKARALLSKL--GIDVTVADARFCKPL------------DIKLVRELCQNHTFLITVEEGSIGGFGSHVSHF 661 (722)
Q Consensus 597 Gs~v~~-aleAa~~L~~~--Gi~v~Vidl~~lkPl------------d~e~i~~~~~~~~~vvvvEe~~~gG~gs~v~~~ 661 (722)
|+++.. |++|++.|+++ |++++||++. .+| +.+.+.++.-..+.||+.= -|....|...
T Consensus 622 Gsev~leAlaAa~~L~~~~pgikvRVVSv~--dLf~lQ~~~~~~~~lsd~~f~~lFt~d~pvif~~----hgyp~~i~~l 695 (785)
T PRK05261 622 GDVPTLETLAAADLLREHFPDLKIRVVNVV--DLMKLQPPSEHPHGLSDREFDALFTTDKPVIFAF----HGYPWLIHRL 695 (785)
T ss_pred CcHhhHHHHHHHHHHHhhCCCCCEEEEEec--hhhhhCCcccCCCCCCHHHHHHhCCCCCcEEEEe----CCCHHHHHHH
Confidence 999988 99999999999 9999999994 443 3466677776666665432 2344455554
Q ss_pred HHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHh
Q 004946 662 IALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLL 711 (722)
Q Consensus 662 l~~~~~~~~~~~v~~ig~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~ll 711 (722)
+..+. ...+++..|.. +=+..-++-+++-..++|--+++..+.+-+
T Consensus 696 ~~~r~---~~~~~~v~gy~-e~g~tttp~dm~~~N~~~r~~l~~~a~~~~ 741 (785)
T PRK05261 696 TYRRT---NHHNFHVRGYK-EEGTTTTPFDMVVLNELDRFHLAIDAIDRV 741 (785)
T ss_pred hccCC---CCCccEEEEEe-cCCCCCCHHHHHHHhCCCHHHHHHHHHHhh
Confidence 44331 12355666653 334455678888899999999888776643
No 30
>KOG0524 consensus Pyruvate dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=100.00 E-value=1.8e-43 Score=350.85 Aligned_cols=306 Identities=22% Similarity=0.339 Sum_probs=261.6
Q ss_pred CccchHHHHHHHHHHHHhcCCCEEEEecCCC---Cccch-HHHHHhCC-CceeecccchHHHHHHHHHHhcCCCeeEEEe
Q 004946 399 YSRTYDDCFIEALVMEAEKDKDIVVVHAGME---MDLSL-QLFQEKFP-ERYFDVGMAEQHAVTFSAGLACGGLKPFCII 473 (722)
Q Consensus 399 ~~~s~~~a~~~~L~~~~~~d~~iv~i~ad~~---~~~~l-~~f~~~~p-~R~~d~GIaE~~av~~AaGlA~~G~~p~~~t 473 (722)
...+.++|+++++.++|++|+++++++++++ |+.++ .++.++|. .|++|++|+|....|+|.|+|+.|+||+|+.
T Consensus 33 ~~mtvreALn~amdEEm~rD~~VfvmGEeV~qy~GaykvtkGL~~K~G~~RV~DTPItE~gFtG~avGAA~~GLrPi~ef 112 (359)
T KOG0524|consen 33 KEMTVREALNQAMDEEMDRDPRVFVMGEEVGQYGGAYKVTKGLLDKFGDKRVLDTPITEMGFTGIAVGAAMAGLRPICEF 112 (359)
T ss_pred eeeeHHHHHHHHHHHHhccCCcEEEechhhhhcCCeeehhhhHHHhcCCceeecCcchhcccchhhHhHHHhCcchhhhh
Confidence 3578899999999999999999999999987 34444 68888984 6999999999999999999999999999996
Q ss_pred -cHhhHHHHHHHHHHHHhc--------CCCCEEEEEeCCCccCCCCCCcCcHHHHHHhcCCCCcEEEeeCCHHHHHHHHH
Q 004946 474 -PSAFLQRAYDQVVNDVDQ--------QRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVA 544 (722)
Q Consensus 474 -~~~Fl~ra~dqi~~~~a~--------~~lpVv~v~~~~G~~G~dG~TH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~ 544 (722)
...|...++|||+|.+++ +++|++|.+.+ |....-|++|++.+. +|+.++||++|++|.+++|++++++
T Consensus 113 MtfnFsmqAid~IiNsaakt~YmSgG~~~~piVfRGPn-G~~~gv~AqHSQ~f~-~wy~siPGlkvvapysaedakGLlK 190 (359)
T KOG0524|consen 113 MTFNFSMQAIDQIINSAAKTHYMSGGQQPVPIVFRGPN-GAAAGVAAQHSQDFA-SWYGSIPGLKVVAPYSAEDAKGLLK 190 (359)
T ss_pred hcchhHHHHHHHHHHHHHHHhcccCCceeccEEEeCCC-CcccchhhhhhhhhH-HHhccCCCceEeccCChhhhhhHHH
Confidence 688999999999999885 47888888754 322235789999998 7899999999999999999999999
Q ss_pred HHhhhCCCCEEEEecCCCcccc--cCCC---CCCCCccccccEEEEEeCCcEEEEEechhhHHHHHHHHHHHhcCCcEEE
Q 004946 545 TVASIDDRPVCFRYPRGAIVRT--DLPG---YRGIPIEEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTV 619 (722)
Q Consensus 545 ~a~~~~~~Pv~ir~~r~~~~~~--~~p~---~~~~~~~~igk~~vl~eG~dv~lva~Gs~v~~aleAa~~L~~~Gi~v~V 619 (722)
.|+. +++||+++...-. +.. ++++ .+++-+ ++||+.+.|+|++|+||++..++..|++||+.|.++|++++|
T Consensus 191 aAIR-d~NPVV~lEnelL-Yg~~f~i~~E~ls~~fv~-p~gkAkier~G~~iTivt~Sr~v~~~leAA~~L~~~Gvs~EV 267 (359)
T KOG0524|consen 191 AAIR-DENPVVFLENELL-YGLSFEIPEEALSKDFVL-PLGKAKIEREGTHITIVTYSRMVGHCLEAAETLVAKGVSAEV 267 (359)
T ss_pred Hhcc-CCCCeEEEechhh-cCCCccCChhhcCcceee-eccceeeeecCCceEEEEechhHHHHHHHHHHHHhcCCCcee
Confidence 9985 8999999875432 322 2332 224556 899999999999999999999999999999999999999999
Q ss_pred eecCccccchHHHHHHHhcCCCeEEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCC
Q 004946 620 ADARFCKPLDIKLVRELCQNHTFLITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGL 698 (722)
Q Consensus 620 idl~~lkPld~e~i~~~~~~~~~vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~v~~ig~~d~f~~~g~~~~l~~~~gl 698 (722)
||+|+|+|||.++|..+++++.++++||+++ .+|+|++|++.+.++.|.....++.++...|.+.|... ++.+..-.
T Consensus 268 InlrSirP~D~~tI~~Sv~KT~~lvtVe~~~p~~gigaei~A~i~E~~fdyLdAPv~rvtg~DvP~PYa~--~lE~~a~p 345 (359)
T KOG0524|consen 268 INLRSIRPFDIETIGASVKKTNRLVTVEEGWPQFGIGAEICAQIMENAFDYLDAPVQRVTGADVPTPYAK--TLEDWAVP 345 (359)
T ss_pred EeeeccCcccHHHHHHHHhhhceEEEEeccccccchhHHHHHHHHHHHHhhhcchhhhhcCCCCCCccch--hhHhhcCC
Confidence 9999999999999999999999999999998 79999999999999866434668888888898887643 23344556
Q ss_pred CHHHHHHHHHHHh
Q 004946 699 TGHHIAATALSLL 711 (722)
Q Consensus 699 ~~~~I~~~i~~ll 711 (722)
++++|+.++++++
T Consensus 346 ~~~~iV~Avk~~~ 358 (359)
T KOG0524|consen 346 QPADIVTAVKKLC 358 (359)
T ss_pred CHHHHHHHHHHhh
Confidence 9999999998865
No 31
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=100.00 E-value=1.6e-40 Score=391.73 Aligned_cols=526 Identities=14% Similarity=0.129 Sum_probs=355.2
Q ss_pred CCCHHHHHHHHHHH-HHHHHH--hHhc-CCCCCCCcchHHHHHHHHhhccC-----CCCcEEEecCCchHHHHHHHh--C
Q 004946 93 SLTIKELKQLAVEI-RSELSS--IVSK-TEKSLKSSLAAVELTVALHHVFH-----APVDKILWDVGEQTYAHKILT--G 161 (722)
Q Consensus 93 ~l~~~~l~~la~ei-R~~ii~--~~~~-~gGh~~~slg~vel~~aL~~vf~-----~p~D~iv~d~GH~~y~h~~lt--G 161 (722)
.++.+++.++.+.+ |.+..+ +..+ .++-..+..|+-.+.++|-...+ .++|.++ ...|+...|.+.. |
T Consensus 185 ~~s~e~~~~il~~m~~~r~fE~fl~~~f~~~Krf~~eG~Ea~i~gl~~li~~a~~lg~~D~vi-gmaHRgrlnvLa~v~G 263 (924)
T PRK09404 185 SFSAEEKKAILERLTAAEGFERFLHTKFVGQKRFSLEGGESLIPMLDEIIRRAGKLGVKEIVI-GMAHRGRLNVLVNVLG 263 (924)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccchhhHHHHHHHHHHHHHhCCCCCEEE-ecCcCchHHHHHHhcC
Confidence 77777777765543 322222 2222 34444467787555555544221 2567655 3459998876653 6
Q ss_pred chhhhhHHHhhCCC--------C-------CCCC----CCCCCCC--CcCcCCCcchHHHHHHHHHHHHHcCCC------
Q 004946 162 RRSLIHTLRKKDGI--------S-------GYTS----RSESEYD--PFNAGHGCNSVSAGLGMAVARDIKGKR------ 214 (722)
Q Consensus 162 r~~~~~~~r~~ggl--------~-------g~~~----~~es~~d--~~~~G~~G~~ls~A~G~A~A~~l~~~~------ 214 (722)
.... ..+..+-|. + |++. +..+.|. .+..+|+|...|.|+|+|.|.++++.+
T Consensus 264 ~~~~-~ifaEf~Gk~~~~~~~~~GdvkyHlG~~~~~~g~gg~mhi~l~~npShleav~Pva~G~A~A~q~~~~~~~~~~~ 342 (924)
T PRK09404 264 KPPR-DLFAEFEGKHGPDEVLGSGDVKYHLGFSSDRETDGGEVHLSLAFNPSHLEIVNPVVEGSVRARQDRRGDGQDRKK 342 (924)
T ss_pred CCHH-HHHHHHcCCCCCCCCCCCCCcccccCccccccCCCCeeEeeccCCccccccccCeehhHHHHHHHhcCCcccccc
Confidence 4211 112222221 1 1111 1222332 223489999999999999999988777
Q ss_pred CeEEEEecCCCc-ccchHHHHHHHhhhcCCC---EEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhHHHHHHHH
Q 004946 215 ECIVTVISNGTT-MAGQAYEAMSNAGYLDSN---MIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREV 290 (722)
Q Consensus 215 ~~Vv~viGDGa~-~~G~~~EAln~A~~~~~p---livIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~ 290 (722)
..+||++|||++ .+|.+||+||+|+.++.| +|+||.||++. +.| +.. +.++.
T Consensus 343 ~v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveNNq~g-~tT-------~~~-------~~~s~--------- 398 (924)
T PRK09404 343 VLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQIG-FTT-------SPP-------DDRST--------- 398 (924)
T ss_pred eEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEE-Eee-------CHH-------Hhccc---------
Confidence 789999999998 699999999999999987 99999999982 211 110 00000
Q ss_pred HhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHh--cCCCCCEEEEEEeec
Q 004946 291 AKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVAS--LGSMGPVLVHVVTEE 368 (722)
Q Consensus 291 ~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~--~~~~~P~lI~v~T~k 368 (722)
.....+++++|+..+ .|||+|++++.++.+.|.+ ...++|++|++.|.+
T Consensus 399 ----------------------------~~~sd~Ak~~giP~~-~VDG~D~~AV~~a~~~A~e~~r~g~gPvlIE~~tYR 449 (924)
T PRK09404 399 ----------------------------PYCTDVAKMVQAPIF-HVNGDDPEAVVFATRLALEYRQKFKKDVVIDLVCYR 449 (924)
T ss_pred ----------------------------hhHHHHHeecCCcEE-EEcCCCHHHHHHHHHHHHHHHHhcCcCEEEEEEEec
Confidence 001346788999998 8999999999998876654 225799999999998
Q ss_pred cCCCccccccc--ch---hhc--cCCC-----------------------------------------------------
Q 004946 369 NRRAEDTQKSE--AI---EKQ--QEGA----------------------------------------------------- 388 (722)
Q Consensus 369 G~G~~~ae~~~--~~---~~~--H~~~----------------------------------------------------- 388 (722)
-+|........ .+ ..| |--+
T Consensus 450 ~~GHne~D~p~yr~p~ey~~~~~~~dpi~~~~~~Li~~G~lt~~e~~~i~~~~~~~v~~a~~~A~~~~~~~~~~~~~~~~ 529 (924)
T PRK09404 450 RHGHNEGDEPSFTQPLMYKKIKKHPTTRELYADKLVAEGVITEEEADEMVNEYRDALDAGFEVVKEWRPADWLAGDWSPY 529 (924)
T ss_pred CCCCCCCCCCcCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccc
Confidence 88864321100 00 000 0000
Q ss_pred -C------CCCCCCC-------------C----------------------CCccchHHHHHHHHHHHHhcCCCEEEEec
Q 004946 389 -S------DSNSLPF-------------G----------------------NYSRTYDDCFIEALVMEAEKDKDIVVVHA 426 (722)
Q Consensus 389 -~------~~tg~~~-------------~----------------------~~~~s~~~a~~~~L~~~~~~d~~iv~i~a 426 (722)
. ..||-+. + .....|..|...++..++++|++|+++++
T Consensus 530 ~~~~~~~~~~t~v~~~~l~~~~~~~~~~P~~f~~h~~~~k~~~~R~~~~~~~~~idw~~Ae~lA~~s~l~~~~~v~l~Ge 609 (924)
T PRK09404 530 LGHEWDDPVDTGVPLERLKELAEKLTTVPEGFKVHPKVKKILEDRREMAEGEKPIDWGMAEALAFASLLDEGYPVRLSGQ 609 (924)
T ss_pred cccccccccCCCCCHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHHHhCCCCEEEEee
Confidence 0 0111110 0 02246889999999999999999999999
Q ss_pred CCCCcc--------------c----hHHHHHhC-CCceeecccchHHHHHHHHHHhcCCCee--EEEe-cHhhHH---HH
Q 004946 427 GMEMDL--------------S----LQLFQEKF-PERYFDVGMAEQHAVTFSAGLACGGLKP--FCII-PSAFLQ---RA 481 (722)
Q Consensus 427 d~~~~~--------------~----l~~f~~~~-p~R~~d~GIaE~~av~~AaGlA~~G~~p--~~~t-~~~Fl~---ra 481 (722)
|++.|+ | +.++.++| |.|++|++|+|.+++|++.|+|+.|.+| ++++ |.+|+. .+
T Consensus 610 Dv~rgtFshRHavl~dq~~gg~~~~~~~l~~~~g~~rV~nsplsE~~~~G~~~G~a~~g~~~l~i~E~qfgDF~~~AQ~~ 689 (924)
T PRK09404 610 DSGRGTFSHRHAVLHDQKTGETYIPLNHLSEGQASFEVYDSPLSEEAVLGFEYGYSTAEPNTLVIWEAQFGDFANGAQVV 689 (924)
T ss_pred eCCCCcccccchhccccCCCCEeccccchhhhcCCceEecCcchHHHHHHHHHHHHhcCCCCceEEEEeccccccchHHH
Confidence 997543 1 36777788 7999999999999999999999999975 8987 999975 77
Q ss_pred HHHHHHHH-hcC--CCCEEEEEeCCCccCCCCCCcCcHHHHHHhcCC--CCcEEEeeCCHHHHHHHHHHHhhhC-CCCEE
Q 004946 482 YDQVVNDV-DQQ--RLPVRFVITSAGLVGSDGPTQCGAFDITFMSCL--PNMIVMAPSDEDELVDMVATVASID-DRPVC 555 (722)
Q Consensus 482 ~dqi~~~~-a~~--~lpVv~v~~~~G~~G~dG~TH~~~~d~a~~~~i--P~l~V~~Psd~~E~~~~l~~a~~~~-~~Pv~ 555 (722)
+||+++.+ ++. ..++++...+++ .|..+..|++..+ +++... |||+|+.|++|.+++++|+.++.++ .+|++
T Consensus 690 ~Dq~i~~~~~k~~~~sglv~~~p~G~-~g~g~~hsS~~~E-~~l~~~~~~gl~Vv~pstpad~~~lLr~q~~r~~r~Pvv 767 (924)
T PRK09404 690 IDQFISSGEQKWGRLSGLVMLLPHGY-EGQGPEHSSARLE-RFLQLCAEDNMQVCNPTTPAQYFHLLRRQALRPFRKPLV 767 (924)
T ss_pred HHHHHHHHHHHhcCccCeEEEecCcC-CCCChhhhccCHH-HHHHhCCCCCCEEEecCCHHHHHHHHHHHHhhCCCCCEE
Confidence 99999886 543 356777776653 3433344444555 677544 7999999999999999999976445 49999
Q ss_pred EEecCCCcccc-------cCCCCCCCCccccccEEEEEeCCcE--EEEEechhhHHHHHHHHHHHhcCCcEEEeecCccc
Q 004946 556 FRYPRGAIVRT-------DLPGYRGIPIEEIGKGKVLVEGKDV--ALLGYGAMVQNCLKARALLSKLGIDVTVADARFCK 626 (722)
Q Consensus 556 ir~~r~~~~~~-------~~p~~~~~~~~~igk~~vl~eG~dv--~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lk 626 (722)
|..|+..+... +++.. .+.. .++++. .+++++| +|||||.++..+++|++.+. ..++.|||+++|.
T Consensus 768 ~~~pK~L~r~~~~~s~~~e~~~~-~f~~-vi~~~~-~~~~~~v~r~iv~~Gk~~~~~~~a~~~~~--~~~v~ii~le~L~ 842 (924)
T PRK09404 768 VMTPKSLLRHPLAVSSLEELAEG-SFQP-VIGDID-ELDPKKVKRVVLCSGKVYYDLLEARRKRG--IDDVAIVRIEQLY 842 (924)
T ss_pred EeccHHHhCCCCCCCCHHHcCCC-Ccee-eccccc-ccCccceeEEEEEcCHHHHHHHHHHHhCC--CCCEEEEEeeeeC
Confidence 99998753211 11111 1112 345544 5667789 79999999999999988543 3499999999999
Q ss_pred cchHHHHHHHhcCC---CeEEEEcCC-CCCChHHHHHHHHHhcCCCCCCCceEEEecCCc
Q 004946 627 PLDIKLVRELCQNH---TFLITVEEG-SIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDN 682 (722)
Q Consensus 627 Pld~e~i~~~~~~~---~~vvvvEe~-~~gG~gs~v~~~l~~~~~~~~~~~v~~ig~~d~ 682 (722)
|||.+.|.++++++ +.+|+|+|. ...|.+..|...+..- +....++.-+|=|..
T Consensus 843 P~~~~~i~~~v~k~~~~~~~v~vqEe~~n~G~~~~~~~~~~~~--~~~~~~~~y~gR~~~ 900 (924)
T PRK09404 843 PFPHEELAAELAKYPNAKEVVWCQEEPKNQGAWYFIQHHLEEV--LPEGQKLRYAGRPAS 900 (924)
T ss_pred CCCHHHHHHHHHhcCCCCeEEEEeeCCCCCCcHHHHHHHHHHH--hccCCeeEEECCCCc
Confidence 99999999999886 366666655 4788898887777532 111124555564443
No 32
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=100.00 E-value=7.1e-40 Score=359.86 Aligned_cols=576 Identities=17% Similarity=0.200 Sum_probs=411.0
Q ss_pred HHHHHHHhHh-------cCCCCCCCcchHHHHHHHHhh-ccCCC-----CcEEEecCCchH---HHHHHHhCc--hhhhh
Q 004946 106 IRSELSSIVS-------KTEKSLKSSLAAVELTVALHH-VFHAP-----VDKILWDVGEQT---YAHKILTGR--RSLIH 167 (722)
Q Consensus 106 iR~~ii~~~~-------~~gGh~~~slg~vel~~aL~~-vf~~p-----~D~iv~d~GH~~---y~h~~ltGr--~~~~~ 167 (722)
+|..++.++- +.|||++|+-|...+..++|. .|+.+ .|++.+ .||.+ |+-.+|-|| .++|.
T Consensus 85 irWna~a~vlRaskk~l~lGGH~aSfaSsatlyev~fnhffr~~~~~~ggDlV~~-qgHaSPg~yArafLeGRlseeqLd 163 (887)
T COG2609 85 IRWNAHAMVLRASKKGLELGGHIASFASSATLYEVGFNHFFRAKSEKDGGDLVFF-QGHASPGIYARAFLEGRLTEEQLD 163 (887)
T ss_pred HHHHHHHHHHHccCCCCCccchhhhhhhHHHHHHHHHHHHhcCcCCCCCCceEEE-ecCCCchHHHHHHHhccccHHHHH
Confidence 4655555543 248999999999999999885 56532 487776 89988 999999999 78899
Q ss_pred HHHhhC---CCCCCCCCCC-CCCCCcCcCCCcchHHHHHHHHHHHHHc-------CCCCeEEEEecCCCcccchHHHHHH
Q 004946 168 TLRKKD---GISGYTSRSE-SEYDPFNAGHGCNSVSAGLGMAVARDIK-------GKRECIVTVISNGTTMAGQAYEAMS 236 (722)
Q Consensus 168 ~~r~~g---gl~g~~~~~e-s~~d~~~~G~~G~~ls~A~G~A~A~~l~-------~~~~~Vv~viGDGa~~~G~~~EAln 236 (722)
.|||.. |++.||+|.. ..+..|.|+++|-+.-.|+=-|.-.|+. .++++|+|++|||+|.|+...+|+.
T Consensus 164 nFRqev~g~gl~SYPhp~lmpdfwqFpTvSmGLGp~~aiyqArf~kYL~~RGl~~~~~~~v~afLGDgEmDEpes~gAi~ 243 (887)
T COG2609 164 NFRQEVDGKGLSSYPHPKLMPDFWQFPTVSMGLGPIQAIYQARFLKYLEARGLKDTSDQKVWAFLGDGEMDEPESRGAIT 243 (887)
T ss_pred HHHHhccCCCCCCCCCCcCCccccccCcccccccHHHHHHHHHHHHHHHhcCCcCCCCCeEEEEecCcccCCchhhHHHH
Confidence 999975 4999999864 4567799999988877777666655543 3578999999999999999999999
Q ss_pred HhhhcC-CCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhHHHHHHHHHhhhhhhc-Ccc---------HHHH
Q 004946 237 NAGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRI-GRG---------MHEW 305 (722)
Q Consensus 237 ~A~~~~-~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~-g~~---------~~~~ 305 (722)
.|+..+ .|++||||.|.|. .+.|+-+-++.++++. .-+|..++.+.+.+ |.. -...
T Consensus 244 ~A~re~LdNlifVincNlQr--------LDgpVrgngkiiqelE-----~~FrgAGW~VikviWg~~wd~ll~kd~~gkL 310 (887)
T COG2609 244 EAAREKLDNLIFVINCNLQR--------LDGPVRGNGKIIQELE-----GIFRGAGWNVIKVIWGRRWDELLAKDTGGKL 310 (887)
T ss_pred HHHHhcCCceEEEEecchhh--------cCCcccCCchhHHHHH-----HHhccCCceEEEEEecccHHHHhcccCcchH
Confidence 999999 8999999999983 3555555555555543 23466677777653 321 1123
Q ss_pred HHHHHHHhhcccC---------------C---ChhhhHhhcC---ceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEEEE
Q 004946 306 AAKVDEYARGMIG---------------P---QGSTLFEELG---LYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHV 364 (722)
Q Consensus 306 ~~~~~~~~~~~~~---------------~---~~~~lfea~G---~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v 364 (722)
.+.|++...+.++ + ....+.+.+. +... .-.|||+..+.+|+++|.+. .++|++|..
T Consensus 311 ~~~m~e~~dgdyqt~kakdGayvRehff~~~Pe~~aLVa~~tD~diw~L-~rGGHD~~ki~aA~~~A~~~-kg~PtvilA 388 (887)
T COG2609 311 RQLMNETVDGDYQTFKAKDGAYVREHFFGRYPETAALVADMTDDDIWAL-NRGGHDPEKVYAAFKKAQEH-KGRPTVILA 388 (887)
T ss_pred HHHHHhcccchhhhhcccccHHHHHHHhccChHHHHHHHhccHHHHHHH-hcCCCCHHHHHHHHHHHhcC-CCCceEEEE
Confidence 3344444333211 1 1111222111 0011 14589999999999999985 358999999
Q ss_pred EeeccCCCcccccccchhhccCCCC---------------C------------CCCC-----------------------
Q 004946 365 VTEENRRAEDTQKSEAIEKQQEGAS---------------D------------SNSL----------------------- 394 (722)
Q Consensus 365 ~T~kG~G~~~ae~~~~~~~~H~~~~---------------~------------~tg~----------------------- 394 (722)
+|+||.|.+.+-. +....|.+.+ | ..|.
T Consensus 389 ~TIKGyglg~~~e--g~n~aHq~kkm~~~~l~~~Rdr~~ipvsd~e~e~lpy~~~g~~s~E~~yl~~rr~al~g~~p~rr 466 (887)
T COG2609 389 KTIKGYGLGEAAE--GKNIAHQVKKMTPDQLKEFRDRFGIPVSDAELEELPYYHFGEDSPEYKYLHARRAALGGYLPARR 466 (887)
T ss_pred eeeccccCchhhc--ccchhhhhhcCCHHHHHHHHhhcCCCCchhhhhcCCcCCCCCCcHHHHHHHHHHHhcCCCCchhc
Confidence 9999999864322 3445555533 0 0000
Q ss_pred -----C--CC------------CCccchHHHHHHHHHHHHhcC---CCEEEEecCCCCccchHHHHHhC-----------
Q 004946 395 -----P--FG------------NYSRTYDDCFIEALVMEAEKD---KDIVVVHAGMEMDLSLQLFQEKF----------- 441 (722)
Q Consensus 395 -----~--~~------------~~~~s~~~a~~~~L~~~~~~d---~~iv~i~ad~~~~~~l~~f~~~~----------- 441 (722)
+ ++ ....|.+.+|...|.+++++. ++||-|.||...++|+++|..+.
T Consensus 467 ~~~t~~l~vP~l~~~~a~~~~~g~~iSTtmAfvr~l~~llkdk~ig~riVpiipDearTfgmeg~f~q~GIy~~~GQ~y~ 546 (887)
T COG2609 467 PKFTPALPVPSLSDFQALLKGQGEEISTTMAFVRILNELLKDKEIGKRIVPIIPDEARTFGMEGLFRQIGIYNPNGQQYT 546 (887)
T ss_pred ccCCCCccCCcHHHHHHHHhccCccchhHHHHHHHHHHHHhccccCCccccccCchhhhccchhhhhhcccccCCCccCC
Confidence 0 00 123678899999999999843 57999999999999997665421
Q ss_pred --------------CCceeecccchHHHHH--HHHHHhcC--C--CeeEEEecHhh-HHHHHHHHHHHHhcCCCCEEEEE
Q 004946 442 --------------PERYFDVGMAEQHAVT--FSAGLACG--G--LKPFCIIPSAF-LQRAYDQVVNDVDQQRLPVRFVI 500 (722)
Q Consensus 442 --------------p~R~~d~GIaE~~av~--~AaGlA~~--G--~~p~~~t~~~F-l~ra~dqi~~~~a~~~lpVv~v~ 500 (722)
.++.++.||+|.++++ +|+|.+++ | +.||...|++| +||..|- ++.+|.|...-.+++
T Consensus 547 p~d~~~~~~ykea~~GQiLqeGInE~ga~~sw~AagtSys~~~~pmiPfyi~YsmFgfqRigD~-~waA~dq~ARgFLlg 625 (887)
T COG2609 547 PQDRDQVMYYKEAESGQILQEGINEAGAFASWIAAGTSYSTHGEPMIPFYIYYSMFGFQRIGDL-LWAAGDQDARGFLLG 625 (887)
T ss_pred ccchhhhhhhhhCCCcchHHhhhccccHHHHHHHHhcccccCCccceeeeeeechhhhhhHHHH-HHHHHhhhhcceeEe
Confidence 3689999999999998 47777665 4 78999899999 9999985 478899999844444
Q ss_pred eCCCc--cCCCCCCcCcHHHHHHhcCCCCcEEEeeCCHHHHHHHHHHHhhhCCC------CEEEEecCCCcccccCCCCC
Q 004946 501 TSAGL--VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDR------PVCFRYPRGAIVRTDLPGYR 572 (722)
Q Consensus 501 ~~~G~--~G~dG~TH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~~~~------Pv~ir~~r~~~~~~~~p~~~ 572 (722)
..+|. ....|-.|+.....-+-..+||++.|.|+.+.|+..+++.++.+--+ -.||++...+.+....|..
T Consensus 626 aTagrtTLngEGlqHedghS~l~~~~ip~~~tYdPafayEvAVI~~~g~~rmy~~~qe~v~yYlt~~ne~~~qPamp~g- 704 (887)
T COG2609 626 ATAGRTTLNGEGLQHEDGHSHLQAMTIPNCISYDPAFAYEVAVIMQDGLRRMYGEGQENVFYYITLSNENYPQPAMPEG- 704 (887)
T ss_pred ecCCCceeCccccccccccchhhhhcCCCccccCchHHHHHHHHHHHHHHHHhccCcCCcEEEEEeccCcCCCCCCCCc-
Confidence 44444 23457788866655566779999999999999999999999975222 3556665555443333322
Q ss_pred CCCccccccE-EEEEe-----CCcEEEEEechhhHHHHHHHHHHHh-cCCcEEEeecCccccchH---------------
Q 004946 573 GIPIEEIGKG-KVLVE-----GKDVALLGYGAMVQNCLKARALLSK-LGIDVTVADARFCKPLDI--------------- 630 (722)
Q Consensus 573 ~~~~~~igk~-~vl~e-----G~dv~lva~Gs~v~~aleAa~~L~~-~Gi~v~Vidl~~lkPld~--------------- 630 (722)
.. +.|-|+ +.++. +.+|.|+++|..+.+|++|++.|++ .|+.++|.++.+..-|-.
T Consensus 705 -ae-~gI~kG~Y~l~~~~~~~~~~vqll~SGai~~ea~~AaelL~~d~gv~adl~svtS~~eL~rdg~a~~R~n~lhP~~ 782 (887)
T COG2609 705 -AE-EGIIKGIYKLETPGGQGKAKVQLLGSGAILREALEAAELLAKDYGVEADLWSVTSFDELARDGQAAERWNLLHPTE 782 (887)
T ss_pred -ch-hhhhhceeEeecCCCCCCceEEEEecchhHHHHHHHHHHHhhccccccCeeecccHHHHhcchHHHHHHHhcCCCC
Confidence 11 245565 44443 3689999999999999999999988 699999999997655532
Q ss_pred ----HHHHHHhcCCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHH
Q 004946 631 ----KLVRELCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAAT 706 (722)
Q Consensus 631 ----e~i~~~~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~v~~ig~~d~f~~~g~~~~l~~~~gl~~~~I~~~ 706 (722)
+.+.+.+.....+|++-+.... +.+.|-+++ +.+.+.+|. |.|+.+++.+++.++|.+|+..|+.+
T Consensus 783 ~~~v~yv~~~L~~~~p~Va~tDy~~~-~a~qir~~v--------p~~y~vLGt-dgFGrSdsr~~Lr~~fevDa~~vv~A 852 (887)
T COG2609 783 TPRVPYVAQVLNADGPVVAVTDYMKL-FAEQIRAVV--------PQRYRVLGT-DGFGRSDSRENLRRFFEVDAYYVVVA 852 (887)
T ss_pred CCCchHHHHHhccCCCeEEechhhHh-HHHHHhccc--------CCeeEEecc-CCCCccCcHHHHHHHhccchHHHHHH
Confidence 3455555545677877776521 333333322 456677785 99999999999999999999999999
Q ss_pred HHHHhhc
Q 004946 707 ALSLLGR 713 (722)
Q Consensus 707 i~~ll~~ 713 (722)
+.+.|.+
T Consensus 853 al~~La~ 859 (887)
T COG2609 853 ALSALAK 859 (887)
T ss_pred HHHHHhc
Confidence 9888753
No 33
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=100.00 E-value=2.8e-41 Score=338.15 Aligned_cols=195 Identities=59% Similarity=0.942 Sum_probs=179.0
Q ss_pred CCCCCCcchHHHHHHHHhhccCCCCcEEEecCCchHHHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcch
Q 004946 118 EKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNS 197 (722)
Q Consensus 118 gGh~~~slg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ 197 (722)
+||++++||++|++.+||++|+.|+|+||+|+||++|++++++|+++++.++|++++++|||.+.+++++.+++|++|++
T Consensus 1 ~gh~g~~ls~~~i~~~L~~~~~~~rDr~ils~gH~~~~~~~~~g~~~~l~~~~~~~~~~g~p~~~~~~~~~~~~G~lG~g 80 (195)
T cd02007 1 GGHLGSNLGVVELTLALHYVFDSPKDKIIWDVGHQAYPHKILTGRRDQFHTLRQYGGLSGFTKRSESEYDAFGTGHSSTS 80 (195)
T ss_pred CCCCCcchhHHHHHHHHHHhcCCCCCeEEEecccHHHHHHHHHCCHHHHhhhhcCCCCCCCCcCCCCCCceECCCchhhh
Confidence 59999999999999999999998999999999999999999999999999999999999999998889999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhh
Q 004946 198 VSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSR 277 (722)
Q Consensus 198 ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~ 277 (722)
+|+|+|+|+|.++++++++|||++|||+++||++|||+++|++++.|+++|++||+++ ++++.+
T Consensus 81 l~~A~G~Ala~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~vvdnN~~~--------~~~~~~-------- 144 (195)
T cd02007 81 ISAALGMAVARDLKGKKRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVILNDNEMS--------ISPNVG-------- 144 (195)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEEcccccccChHHHHHHHHHHhCCCEEEEEECCCcc--------cCCCCC--------
Confidence 9999999999999999999999999999999999999999999999999999999983 111211
Q ss_pred hhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCC
Q 004946 278 IQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSM 357 (722)
Q Consensus 278 ~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~ 357 (722)
+...+|+++||.+..++||||++++.++++++++ .+
T Consensus 145 ------------------------------------------~~~~~~~a~G~~~~~~vdG~d~~~l~~a~~~a~~--~~ 180 (195)
T cd02007 145 ------------------------------------------TPGNLFEELGFRYIGPVDGHNIEALIKVLKEVKD--LK 180 (195)
T ss_pred ------------------------------------------CHHHHHHhcCCCccceECCCCHHHHHHHHHHHHh--CC
Confidence 0134688999999867999999999999999987 57
Q ss_pred CCEEEEEEeeccCCC
Q 004946 358 GPVLVHVVTEENRRA 372 (722)
Q Consensus 358 ~P~lI~v~T~kG~G~ 372 (722)
+|++|+++|.||+||
T Consensus 181 ~P~~I~~~T~kg~g~ 195 (195)
T cd02007 181 GPVLLHVVTKKGKGY 195 (195)
T ss_pred CCEEEEEEEecccCc
Confidence 999999999999997
No 34
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.7e-39 Score=317.52 Aligned_cols=222 Identities=23% Similarity=0.374 Sum_probs=193.8
Q ss_pred CCHHHHHHHHHHHHHHHHHhHhc-CCCCCCCcchHHHHHHHHhhc---cC--C----CCcEEEecCCchH---HHHHHHh
Q 004946 94 LTIKELKQLAVEIRSELSSIVSK-TEKSLKSSLAAVELTVALHHV---FH--A----PVDKILWDVGEQT---YAHKILT 160 (722)
Q Consensus 94 l~~~~l~~la~eiR~~ii~~~~~-~gGh~~~slg~vel~~aL~~v---f~--~----p~D~iv~d~GH~~---y~h~~lt 160 (722)
++..+|.+.|.++|+.+++++.. ..||+|+|||++|++.+||.. ++ . .+|+||+|+||.+ |+.....
T Consensus 5 ~~~~~L~~~A~~iRr~~v~m~~~~~~GH~G~SLS~~eILa~LYf~~m~~~p~~p~~~~RDrfiLSKGHaa~AlYa~Lae~ 84 (243)
T COG3959 5 LSVDELERIAREIRRNIVRMLANAGSGHVGGSLSVVEILAVLYFKIMNIDPDDPKWPGRDRFILSKGHAAPALYATLAEK 84 (243)
T ss_pred ccHHHHHHHHHHHHHHHHHHhcccCCCCcCccchHHHHHHHHHHHHhccCCCCCCCCCCCeEEEecccchHHHHHHHHHc
Confidence 67889999999999999999984 468999999999999999964 33 1 2799999999998 8888899
Q ss_pred Cc--hhhhhHHHhhCC-CCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHH
Q 004946 161 GR--RSLIHTLRKKDG-ISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSN 237 (722)
Q Consensus 161 Gr--~~~~~~~r~~gg-l~g~~~~~es~~d~~~~G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~ 237 (722)
|. +++++++++.++ ++|||.+...|+...++|++|++||+|+|||++.|+++.+.+|++++|||+++||++|||+.+
T Consensus 85 G~~p~eeL~~~~~~~srL~~Hp~~~~~pgve~stGSLGqGLsvavGmAlg~kl~~~~~~VyvilGDGEl~EG~~WEAam~ 164 (243)
T COG3959 85 GYFPEEELETFRRIGSRLPGHPERNKTPGVEVSTGSLGQGLSVAVGMALGAKLKGSPYRVYVILGDGELDEGQVWEAAMT 164 (243)
T ss_pred CCCCHHHHHHhccCCCcCCCCCccCCCCceeecCCcccccchHHHHHHHHHhhcCCCceEEEEecCcccccccHHHHHHH
Confidence 96 788999999997 999999988999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcC-CCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcc
Q 004946 238 AGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM 316 (722)
Q Consensus 238 A~~~~-~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~ 316 (722)
|++++ .|||.|++.|+.+- +...- .|.+
T Consensus 165 Aah~~L~NLiaivD~N~~Ql--------dG~t~-----------------------~i~~-------------------- 193 (243)
T COG3959 165 AAHYKLDNLIAIVDRNKLQL--------DGETE-----------------------EIMP-------------------- 193 (243)
T ss_pred HHHhccCcEEEEEecCCccc--------CCchh-----------------------hccC--------------------
Confidence 99999 89999999999741 11111 0000
Q ss_pred cCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEEEEEeecc
Q 004946 317 IGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEEN 369 (722)
Q Consensus 317 ~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kG 369 (722)
..+...+||+|||+++ .|||||++++.+++++++.. .++|++|++.|.||
T Consensus 194 -~~pL~~k~eAFGw~V~-evdG~d~~~i~~a~~~~~~~-~~rP~~IIa~Tvkg 243 (243)
T COG3959 194 -KEPLADKWEAFGWEVI-EVDGHDIEEIVEALEKAKGS-KGRPTVIIAKTVKG 243 (243)
T ss_pred -cchhHHHHHhcCceEE-EEcCcCHHHHHHHHHhhhcc-CCCCeEEEEecccC
Confidence 0123568999999999 89999999999999999875 34999999999987
No 35
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=100.00 E-value=1e-37 Score=366.14 Aligned_cols=415 Identities=14% Similarity=0.102 Sum_probs=298.7
Q ss_pred cCCCcchHHHHHHHHHHHHHcCC------CCeEEEEecCCCc-ccchHHHHHHHhhhcCCCE---EEEEECCCCCCCCCc
Q 004946 191 AGHGCNSVSAGLGMAVARDIKGK------RECIVTVISNGTT-MAGQAYEAMSNAGYLDSNM---IVILNDSRHSLHPKI 260 (722)
Q Consensus 191 ~G~~G~~ls~A~G~A~A~~l~~~------~~~Vv~viGDGa~-~~G~~~EAln~A~~~~~pl---ivIv~dN~~~s~~t~ 260 (722)
.+|++...|.|+|.|.|.+.++. +..+||++|||++ .+|.++|+||+|+.++.|+ |+||.||++. +.|
T Consensus 314 pSHLeav~Pva~G~ArA~q~~~~~~~~~~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfvveNNqyg-~tT- 391 (929)
T TIGR00239 314 PSHLEIVSPVVIGSTRARLDRLNDSPESTKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQIG-FTT- 391 (929)
T ss_pred CcccccccchhhhHHHHHHHhcCCcccccceEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEE-EEE-
Confidence 47999999999999999987765 5688999999997 7999999999999999997 9999999982 211
Q ss_pred cCCCCcchhhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCC
Q 004946 261 EESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHN 340 (722)
Q Consensus 261 ~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd 340 (722)
+.. ..++ ......+++++|+..+ .|||+|
T Consensus 392 ------~~~-------~~~s-------------------------------------~~~~sd~Ak~ygiP~~-~VDG~D 420 (929)
T TIGR00239 392 ------NPL-------DARS-------------------------------------TPYCSDLAKMIQAPIF-HVNADD 420 (929)
T ss_pred ------cHH-------HhcC-------------------------------------ccCHHHHheecCCCEE-EECCCC
Confidence 100 0000 0011346788999998 899999
Q ss_pred HHHHHHHHHHHHh--cCCCCCEEEEEEeeccCCCcccccc--------------cch-----------------------
Q 004946 341 IEDLISVLQEVAS--LGSMGPVLVHVVTEENRRAEDTQKS--------------EAI----------------------- 381 (722)
Q Consensus 341 ~~~l~~al~~a~~--~~~~~P~lI~v~T~kG~G~~~ae~~--------------~~~----------------------- 381 (722)
++++.++.+.|.+ ...++|++|++.|.+-+|....... .++
T Consensus 421 ~~AV~~a~~~Ave~~r~g~gPvlIE~~tYR~~GHne~D~p~~yrp~~~~~i~~~~dPi~~~~~~Li~~Gv~te~e~~~i~ 500 (929)
T TIGR00239 421 PEAVAFATRLAVEYRNTFKRDVFIDLVGYRRHGHNEADEPSATQPLMYQKIKKHPTPRKVYADKLVSEGVATEEDVTEMV 500 (929)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEEeccCCCCCCCCCCccCCHHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 9999998876654 2257999999999988886322110 000
Q ss_pred --------------------h----hccCCCC------CCCCCC-------------CC---------------------
Q 004946 382 --------------------E----KQQEGAS------DSNSLP-------------FG--------------------- 397 (722)
Q Consensus 382 --------------------~----~~H~~~~------~~tg~~-------------~~--------------------- 397 (722)
. .|.+... ..||-+ .+
T Consensus 501 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~l~~l~~~~~~~P~~f~~h~~~~k~~~~R~~~~~ 580 (929)
T TIGR00239 501 NLYRDALEAADCVVPSWREMNTASFTWSPELNHEWDEEYPNKVEMKRLQELAKRISEVPEGVEMHSRVAKIYFDRTKAMA 580 (929)
T ss_pred HHHHHHHHHHHHhhhccCCccccccccccccccccccCCCCCCCHHHHHHHHHHhccCCCCccccHHHHHHHHHHHHHHh
Confidence 0 0000000 011100 00
Q ss_pred --CCccchHHHHHHHHHHHHhcCCCEEEEecCCCCcc-----------------c-hHHHHHhC-CCceeecccchHHHH
Q 004946 398 --NYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDL-----------------S-LQLFQEKF-PERYFDVGMAEQHAV 456 (722)
Q Consensus 398 --~~~~s~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~-----------------~-l~~f~~~~-p~R~~d~GIaE~~av 456 (722)
....+|.+|...++.+++++|++|+++++|++.|+ + +.+|.++| +.|++|++|+|.+++
T Consensus 581 ~g~~~~~~~~A~~~A~~~~l~~~~~V~l~GeDv~rGtFshRHavl~dq~~g~~~~~~~~l~~~~g~~rV~nsplSE~a~~ 660 (929)
T TIGR00239 581 AGEKLFDWGGAENLAFATLVDDGIPVRLSGEDSERGTFFQRHAVLHDQSNGSTYTPLQHLHNGQGAFRVWNSVLSEESVL 660 (929)
T ss_pred cCCCCccHHHHHHHHHHHHHhcCCCEEEEeeeCCCcccccccccccccccCceeecccchhhhcCCeeEEcCCccHHHHH
Confidence 01246899999999999999999999999997642 1 35677788 789999999999999
Q ss_pred HHHHHHhcCCCeeE--EEe-cHhhHH---HHHHHHHHH-HhcC--CCCEEEEEeCCCccCCCCCCcCcHHHHHHh--cCC
Q 004946 457 TFSAGLACGGLKPF--CII-PSAFLQ---RAYDQVVND-VDQQ--RLPVRFVITSAGLVGSDGPTQCGAFDITFM--SCL 525 (722)
Q Consensus 457 ~~AaGlA~~G~~p~--~~t-~~~Fl~---ra~dqi~~~-~a~~--~lpVv~v~~~~G~~G~dG~TH~~~~d~a~~--~~i 525 (722)
|++.|+|+.|.+|+ +++ |.+|+. .++||+++. .++. ..++++...+++ .|..+..|++..+ .++ .+.
T Consensus 661 G~~~G~a~~g~~~l~i~E~qfgDF~~~AQv~~Dq~i~~~~~K~~~~sglv~~~p~G~-~g~g~~hsS~~~E-~~lql~~~ 738 (929)
T TIGR00239 661 GFEYGYATTSPRTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGQMSGLVMLLPHGY-EGQGPEHSSGRLE-RFLQLAAE 738 (929)
T ss_pred HHHHhHHhcCCCCceEEEEeccchhcchHHHHHHHHHHHHHHhcCccCeEEEecCcC-CCCCchhhccCHH-HHHHHhCC
Confidence 99999999998885 766 999985 789999988 4543 356777776653 3443445554665 666 789
Q ss_pred CCcEEEeeCCHHHHHHHHH-HHhhhCCCCEEEEecCCCccc-------ccCCCCCCCCccccccEE-----EEEeCCcEE
Q 004946 526 PNMIVMAPSDEDELVDMVA-TVASIDDRPVCFRYPRGAIVR-------TDLPGYRGIPIEEIGKGK-----VLVEGKDVA 592 (722)
Q Consensus 526 P~l~V~~Psd~~E~~~~l~-~a~~~~~~Pv~ir~~r~~~~~-------~~~p~~~~~~~~~igk~~-----vl~eG~dv~ 592 (722)
|||+|+.|++|.+++++|+ .|+...++|+++..||..+.. .++|.. .+.. ++++.. +.+++-+.+
T Consensus 739 ~gl~Vv~pstpad~~~lLrrqa~r~~~~Pvi~~~~K~L~r~~~a~S~~~e~~~~-~f~~-~i~~~~~~~~~~~~~~v~~v 816 (929)
T TIGR00239 739 QNMQVCVPTTPAQVFHILRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELAEG-TFQP-VIGEIEESGLSLDPEGVKRL 816 (929)
T ss_pred CCCEEEecCCHHHHHHHHHHHHHhCCCCCEEEeccHhhhcCccccCccccCCCC-Cccc-ccccccccccccCccCCcEE
Confidence 9999999999999999999 577534899999999876421 123322 2222 343211 223344555
Q ss_pred EEEechhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcCCC---eEEEEcCC-CCCChHHHHHHHHHh
Q 004946 593 LLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHT---FLITVEEG-SIGGFGSHVSHFIAL 664 (722)
Q Consensus 593 lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~~---~vvvvEe~-~~gG~gs~v~~~l~~ 664 (722)
|+++| ++..++.+ +.++++|+++.|||+++|+|||.++|.++++++. .+|.+.|. ...|-+..|...|..
T Consensus 817 v~~sg-~v~~~l~~-~~~~~~~~~v~iirle~L~Pf~~~~i~~sl~k~~~~~~~vw~qEep~n~Gaw~~v~~rl~~ 890 (929)
T TIGR00239 817 VLCSG-KVYYDLHE-QRRKNGQKDVAIVRIEQLYPFPHKAVKEVLQQYPNLKEIVWCQEEPLNMGAWYYSQPHLRE 890 (929)
T ss_pred EEECc-hHHHHHHH-HHHhcCCCCEEEEEeeeeCCCCHHHHHHHHHhcCCCCeEEEEeccCCCCCCHHHHHHHHHH
Confidence 56655 78778877 6677779999999999999999999999998884 56666554 466666677666653
No 36
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=100.00 E-value=3.8e-38 Score=337.51 Aligned_cols=233 Identities=23% Similarity=0.318 Sum_probs=186.6
Q ss_pred HHHHHHHHHHHHHhHhc-CCCCCCCcchHHHHHHHHhh-ccC----CC----CcEEEecCCchH---HHHHHHhCc---h
Q 004946 100 KQLAVEIRSELSSIVSK-TEKSLKSSLAAVELTVALHH-VFH----AP----VDKILWDVGEQT---YAHKILTGR---R 163 (722)
Q Consensus 100 ~~la~eiR~~ii~~~~~-~gGh~~~slg~vel~~aL~~-vf~----~p----~D~iv~d~GH~~---y~h~~ltGr---~ 163 (722)
+.+|+++|..+++++.+ .+||+|+++|+++++.+||. +++ .| +||||+|+||.+ |+...+.|. .
T Consensus 2 ~~~a~~iR~~~~~~~~~a~sGH~G~~ls~a~i~~~Ly~~~l~~~p~~p~~~~rDrfvlSkGH~~~~lYa~l~~~G~~~~~ 81 (332)
T PF00456_consen 2 KRIANTIRKLILDMVQKAGSGHPGSSLSAADILYALYFKVLRYDPKNPKWPNRDRFVLSKGHASPALYAILALRGYDLSE 81 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHT-S-SHHHHHHHHHHHHHHHHT-BBBTTBTTSTTS-EEEESSGGGHHHHHHHHHHTTSSS-H
T ss_pred hHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHhhccccCCccccCCCCCcEEEeccchhHHHHHHHHHhcCCCCH
Confidence 46799999999999984 68999999999999999986 332 23 799999999999 999999997 4
Q ss_pred hhhhHHHhhCC-CCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcC----------CCCeEEEEecCCCcccchHH
Q 004946 164 SLIHTLRKKDG-ISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKG----------KRECIVTVISNGTTMAGQAY 232 (722)
Q Consensus 164 ~~~~~~r~~gg-l~g~~~~~es~~d~~~~G~~G~~ls~A~G~A~A~~l~~----------~~~~Vv~viGDGa~~~G~~~ 232 (722)
+++.++|+.++ +.|||.....++..+++|++|+|+|+|+|||+|.++++ .+++|+|++|||+++||.+|
T Consensus 82 ~~L~~fr~~~s~~~gHP~~~~~~gie~stGsLGqGl~~avG~Ala~k~~~~~~n~~~~~~~~~~vy~l~GDGel~EG~~~ 161 (332)
T PF00456_consen 82 EDLKTFRQLGSRLPGHPEYGKTPGIEASTGSLGQGLSIAVGMALAEKMLGARFNKPGFDIIDHRVYVLMGDGELQEGSVW 161 (332)
T ss_dssp HHHTTTTSTTSSSSSSTTTTTSTT-SS--SSTTHHHHHHHHHHHHHHHHHHHHHBTTBSTTT--EEEEEEHHHHHSHHHH
T ss_pred HHHHHhccCCCCCCCCCcccCCceeEeeccchhcchhhHHHHHHHHHHHHhhhcccccccccceEEEEecCccccchhhH
Confidence 67888999986 88999977788989999999999999999999988653 36789999999999999999
Q ss_pred HHHHHhhhcC-CCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHH
Q 004946 233 EAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDE 311 (722)
Q Consensus 233 EAln~A~~~~-~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~ 311 (722)
||+.+|++++ .|||+|+++|+.+ ++.++... + .
T Consensus 162 EA~~~A~~~~L~nLi~i~D~N~~q--------~dg~~~~~---~--------------------------~--------- 195 (332)
T PF00456_consen 162 EAASLAGHYKLDNLIVIYDSNGIQ--------IDGPTDIV---F--------------------------S--------- 195 (332)
T ss_dssp HHHHHHHHTT-TTEEEEEEEESEE--------TTEEGGGT---H--------------------------H---------
T ss_pred HHHHHHHHhCCCCEEEEEecCCcc--------cCCCcccc---c--------------------------c---------
Confidence 9999999999 8899999999973 22222100 0 0
Q ss_pred HhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEEEEEeeccCCCcccccccchhhccCCCC
Q 004946 312 YARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGAS 389 (722)
Q Consensus 312 ~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kG~G~~~ae~~~~~~~~H~~~~ 389 (722)
.+...+|++|||+++.+.||||+++|.++|++++.. .++|++|+++|+||+|++.+|+ ..++||.++
T Consensus 196 -------~~~~~k~~a~Gw~v~~v~dGhd~~~i~~A~~~a~~~-~~kP~~Ii~~TvkG~G~~~~e~---~~~~Hg~~l 262 (332)
T PF00456_consen 196 -------EDIAKKFEAFGWNVIEVCDGHDVEAIYAAIEEAKAS-KGKPTVIIARTVKGKGVPFMEG---TAKWHGSPL 262 (332)
T ss_dssp -------SHHHHHHHHTT-EEEEEEETTBHHHHHHHHHHHHHS-TSS-EEEEEEE-TTTTSTTTTT---SGGGTSS--
T ss_pred -------hHHHHHHHHhhhhhcccccCcHHHHHHHHHHHHHhc-CCCCceeecceEEecCchhhcc---cchhhccCC
Confidence 011457999999999555999999999999999874 4799999999999999999886 889999876
No 37
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=100.00 E-value=3.3e-37 Score=330.46 Aligned_cols=230 Identities=15% Similarity=0.161 Sum_probs=192.7
Q ss_pred HHHHHHHHHHHHHhHhcC-C------CCCCCcchHHHHHHHHhh-ccCC-----CCcEEEecCCchH---HHHHHHhCc-
Q 004946 100 KQLAVEIRSELSSIVSKT-E------KSLKSSLAAVELTVALHH-VFHA-----PVDKILWDVGEQT---YAHKILTGR- 162 (722)
Q Consensus 100 ~~la~eiR~~ii~~~~~~-g------Gh~~~slg~vel~~aL~~-vf~~-----p~D~iv~d~GH~~---y~h~~ltGr- 162 (722)
+++.+.+|..++.++.+. + ||+++++|+++++++||+ +|+. ++|+ |+++||++ |++++++|+
T Consensus 5 ~~~~~~iR~~i~~mv~~a~s~~~~~gGH~G~slS~adI~~aLy~~~l~~~p~~~~RDR-vlSkGHas~~lYA~L~l~G~~ 83 (386)
T cd02017 5 RRIRSLIRWNAMAMVHRANKKDLGIGGHIATFASAATLYEVGFNHFFRARGEGGGGDL-VYFQGHASPGIYARAFLEGRL 83 (386)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcccCCCCCcchhHHHHHHHHHHHhcCCCCCCCCCCE-EEeCCcccHHHHHHHHHcCCC
Confidence 445778999999999743 3 999999999999999984 6662 3899 66899999 999999998
Q ss_pred -hhhhhHHHhhCC---CCCCCCCCCCCC-CCcCcCCCcchHHHHHHHHHHHHH-------cCCCCeEEEEecCCCcccch
Q 004946 163 -RSLIHTLRKKDG---ISGYTSRSESEY-DPFNAGHGCNSVSAGLGMAVARDI-------KGKRECIVTVISNGTTMAGQ 230 (722)
Q Consensus 163 -~~~~~~~r~~gg---l~g~~~~~es~~-d~~~~G~~G~~ls~A~G~A~A~~l-------~~~~~~Vv~viGDGa~~~G~ 230 (722)
.+++.++|++++ +++||++..++. .++++|++|++++.|+|||+|.++ ++.+++|+|++|||+++||+
T Consensus 84 ~~edL~~fr~~gs~p~l~g~p~~~~~~~gve~sTGSLGqGLs~AvGmAla~r~l~a~~~~~~~~~rvyvllGDGEl~EG~ 163 (386)
T cd02017 84 TEEQLDNFRQEVGGGGLSSYPHPWLMPDFWEFPTVSMGLGPIQAIYQARFNRYLEDRGLKDTSDQKVWAFLGDGEMDEPE 163 (386)
T ss_pred CHHHHHhhccCCCCCCCCCCCCCCCCCCCeeeCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcccccccHH
Confidence 578999999998 899998876665 678999999999999999999997 56789999999999999999
Q ss_pred HHHHHHHhhhcC-CCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHH
Q 004946 231 AYEAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKV 309 (722)
Q Consensus 231 ~~EAln~A~~~~-~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~ 309 (722)
+|||+++|++++ .||++|+|+|+++ ++.++..+.. ..
T Consensus 164 vwEA~~~Ag~~kL~NLivIvD~N~~q--------idG~t~~v~~---------------------------~~------- 201 (386)
T cd02017 164 SLGAIGLAAREKLDNLIFVVNCNLQR--------LDGPVRGNGK---------------------------II------- 201 (386)
T ss_pred HHHHHHHHHHhCCCCEEEEEECCCCc--------cCCccccccc---------------------------Cc-------
Confidence 999999999999 7999999999984 2222221000 00
Q ss_pred HHHhhcccCCChhhhHhhcCceEEeecC----------------------------------------------------
Q 004946 310 DEYARGMIGPQGSTLFEELGLYYIGPVD---------------------------------------------------- 337 (722)
Q Consensus 310 ~~~~~~~~~~~~~~lfea~G~~~~~~vd---------------------------------------------------- 337 (722)
.+...+|++|||.++ .||
T Consensus 202 ---------e~l~~kf~AfGW~vi-~V~~g~~~~~~f~~~gg~~l~~~~~~~~~~~~~~l~~~~~~~~r~~l~~~~~~~~ 271 (386)
T cd02017 202 ---------QELEGIFRGAGWNVI-KVIWGSKWDELLAKDGGGALRQRMEETVDGDYQTLKAKDGAYVREHFFGKYPELK 271 (386)
T ss_pred ---------hhHHHHHHhcCCEEE-EEecCCcchhhhccCcchHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHH
Confidence 112567999999998 676
Q ss_pred -----------------CCCHHHHHHHHHHHHhcCCCCCEEEEEEeeccCCCc-ccccccchhhccC
Q 004946 338 -----------------GHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAE-DTQKSEAIEKQQE 386 (722)
Q Consensus 338 -----------------Ghd~~~l~~al~~a~~~~~~~P~lI~v~T~kG~G~~-~ae~~~~~~~~H~ 386 (722)
|||+++|.+||++++.. .++|++|+++|+||+|.+ ++|+ ..+||+
T Consensus 272 ~~~~~~~d~~~~~~~~gGhD~~~i~~A~~~a~~~-~~kPt~Iia~TikG~G~~~~~e~---~~~~h~ 334 (386)
T cd02017 272 ALVTDLSDEDLWALNRGGHDPRKVYAAYKKAVEH-KGKPTVILAKTIKGYGLGAAGEG---RNHAHQ 334 (386)
T ss_pred HHhhcccHHhhhhhccCCCCHHHHHHHHHHHHhC-CCCCeEEEEeCeecCCCChhccC---Ccchhc
Confidence 99999999999999864 368999999999999998 4665 788997
No 38
>KOG0525 consensus Branched chain alpha-keto acid dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=100.00 E-value=1.3e-37 Score=304.64 Aligned_cols=304 Identities=23% Similarity=0.313 Sum_probs=258.8
Q ss_pred CccchHHHHHHHHHHHHhcCCCEEEEecCCCCcc--c-hHHHHHhCC-CceeecccchHHHHHHHHHHhcCCCeeEEEe-
Q 004946 399 YSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDL--S-LQLFQEKFP-ERYFDVGMAEQHAVTFSAGLACGGLKPFCII- 473 (722)
Q Consensus 399 ~~~s~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~--~-l~~f~~~~p-~R~~d~GIaE~~av~~AaGlA~~G~~p~~~t- 473 (722)
.++...++++++|.-.++.||+-+++++|++-+. . ..+++++|. +|+||++++||.++++..|+|..|.+.+.++
T Consensus 39 ~~mnl~qsvn~al~ial~tdp~a~vfgedv~fggvfrct~gl~~kfgk~rvfntplceqgivgfgig~aa~g~~aiaeiq 118 (362)
T KOG0525|consen 39 KKMNLYQSVNQALHIALETDPRAVVFGEDVAFGGVFRCTTGLAEKFGKDRVFNTPLCEQGIVGFGIGLAAMGATAIAEIQ 118 (362)
T ss_pred ccchHHHHHHHHHHHHhhcCCceEEeccccccceEEEeecchHHHhCccccccCchhhcccceechhhhhcccceEEEEe
Confidence 4577889999999999999999999999987432 1 357888885 7999999999999999999999999999999
Q ss_pred cHhhHHHHHHHHHHHHhcCCC--------C-EEEEEeCCCccCCCCCCcCcHHHHHHhcCCCCcEEEeeCCHHHHHHHHH
Q 004946 474 PSAFLQRAYDQVVNDVDQQRL--------P-VRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVA 544 (722)
Q Consensus 474 ~~~Fl~ra~dqi~~~~a~~~l--------p-Vv~v~~~~G~~G~dG~TH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~ 544 (722)
|++++.-|||||+|.+++.+. . ..+.. ..|.+|..+-.|+++-+ +++.+.||++|+.|.+|.|+++++.
T Consensus 119 fadyifpafdqivneaakfryrsgnqfncg~ltir~-p~gavghg~~yhsqspe-aff~h~pgikvviprsp~qakglll 196 (362)
T KOG0525|consen 119 FADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTIRA-PWGAVGHGALYHSQSPE-AFFCHVPGIKVVIPRSPRQAKGLLL 196 (362)
T ss_pred eccccchhHHHHHHHHHhheeccCCccccCceEEec-cccccccccccccCCch-hheecCCCceEEecCCcchhhceee
Confidence 999999999999999997432 1 34443 35668888999999998 8999999999999999999999999
Q ss_pred HHhhhCCCCEEEEecCCCcc--cccCCCCCCCCccccccEEEEEeCCcEEEEEechhhHHHHHHHHHHHh-cCCcEEEee
Q 004946 545 TVASIDDRPVCFRYPRGAIV--RTDLPGYRGIPIEEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSK-LGIDVTVAD 621 (722)
Q Consensus 545 ~a~~~~~~Pv~ir~~r~~~~--~~~~p~~~~~~~~~igk~~vl~eG~dv~lva~Gs~v~~aleAa~~L~~-~Gi~v~Vid 621 (722)
.++. +.+|++++.|+-... .+++|.. ++.+ ++++++++|+|+|++||+||+.++.++|+|..-++ .|++++|||
T Consensus 197 scir-dpnp~iffepk~lyr~a~edvp~~-dy~i-plsqaevireg~ditlv~wgtqvh~i~e~a~l~~ek~giscevid 273 (362)
T KOG0525|consen 197 SCIR-DPNPCIFFEPKILYRQAVEDVPEG-DYMI-PLSQAEVIREGSDITLVAWGTQVHVIMEQACLAKEKLGISCEVID 273 (362)
T ss_pred eecc-CCCceEEechHHHHHHhhhhCCCC-Cccc-cccHHHHhhcCCceEEEEcchhhHHHHHHHHhhHHhcCCceEEEe
Confidence 9985 899999999986422 2356653 6778 99999999999999999999999999999986654 599999999
Q ss_pred cCccccchHHHHHHHhcCCCeEEEEcCC-CCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcC-CC
Q 004946 622 ARFCKPLDIKLVRELCQNHTFLITVEEG-SIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAG-LT 699 (722)
Q Consensus 622 l~~lkPld~e~i~~~~~~~~~vvvvEe~-~~gG~gs~v~~~l~~~~~~~~~~~v~~ig~~d~f~~~g~~~~l~~~~g-l~ 699 (722)
+++|-|+|++.+.+++++++++++-.|. .+||||++|++.+.+++|+....++.|++.-|.+.+| +.|-+. .+
T Consensus 274 lkti~pwd~d~v~~sv~ktgrllisheapvtggfgaeiastv~ercfl~leapisrvcg~dtpfp~-----vfepfy~pt 348 (362)
T KOG0525|consen 274 LKTIIPWDKDTVEESVQKTGRLLISHEAPVTGGFGAEIASTVQERCFLNLEAPISRVCGLDTPFPH-----VFEPFYMPT 348 (362)
T ss_pred eecccCccHHHHHHHHHhhceEEEeccCCccCcchHHHHHHHHHHHHhhccCchhhhccCCCCCcc-----cccccccCc
Confidence 9999999999999999998876665555 5899999999999999998888888888777887776 334444 48
Q ss_pred HHHHHHHHHHHhh
Q 004946 700 GHHIAATALSLLG 712 (722)
Q Consensus 700 ~~~I~~~i~~ll~ 712 (722)
...|.++|++.++
T Consensus 349 k~ki~daik~~vn 361 (362)
T KOG0525|consen 349 KNKILDAIKKTVN 361 (362)
T ss_pred HhHHHHHHHHhcc
Confidence 8999999987653
No 39
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=100.00 E-value=1.3e-36 Score=317.62 Aligned_cols=228 Identities=22% Similarity=0.306 Sum_probs=195.4
Q ss_pred HHHHHHHHhHhc-CCCCCCCcchHHHHHHHHhhcc-C--------CCCcEEEecCCchH---HHHHHHhCc--hhhhhHH
Q 004946 105 EIRSELSSIVSK-TEKSLKSSLAAVELTVALHHVF-H--------APVDKILWDVGEQT---YAHKILTGR--RSLIHTL 169 (722)
Q Consensus 105 eiR~~ii~~~~~-~gGh~~~slg~vel~~aL~~vf-~--------~p~D~iv~d~GH~~---y~h~~ltGr--~~~~~~~ 169 (722)
++|+.+++++.+ .+||+++++|++|++.+||+.+ + .++|+||+++||++ |++++++|+ .+++.++
T Consensus 2 ~~R~~~~~~~~~~~~gh~g~~~s~~~i~~~L~~~~~~~~~~~~~~~~rd~~v~s~gH~~~~~ya~l~~~g~~~~~~l~~~ 81 (255)
T cd02012 2 RIRRLSIDMVQKAGSGHPGGSLSAADILAVLYFKVLKYDPADPKWPNRDRFVLSKGHASPALYAVLALAGYLPEEDLKTF 81 (255)
T ss_pred hHHHHHHHHHHhcCCCCcCccHHHHHHHHHHHHHHhCcCCcCCCCCCCCeEEEcCCcHHHHHHHHHHHcCCCCHHHHHHh
Confidence 689999999974 6899999999999999999743 2 23799999999999 778999998 4789999
Q ss_pred HhhCC-CCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCC-CEEE
Q 004946 170 RKKDG-ISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDS-NMIV 247 (722)
Q Consensus 170 r~~gg-l~g~~~~~es~~d~~~~G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~-pliv 247 (722)
|+.++ +.+||.+..+++..+++|++|+++|+|+|+|+|.++++++++|||++|||++++|++||++++|+.+++ |+++
T Consensus 82 ~~~gs~l~gh~~~~~~~g~~~~~GslG~gl~~avG~Ala~~~~~~~~~v~~i~GDG~~~~G~~~eal~~a~~~~l~~li~ 161 (255)
T cd02012 82 RQLGSRLPGHPEYGLTPGVEVTTGSLGQGLSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLIA 161 (255)
T ss_pred cccCCCCCCCCCCCCCCCeeeCCcchhhHHHHHHHHHHHHHHhCCCCEEEEEECcccccccHHHHHHHHHHHcCCCcEEE
Confidence 99985 999999888888889999999999999999999999999999999999999999999999999999995 6999
Q ss_pred EEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhh
Q 004946 248 ILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEE 327 (722)
Q Consensus 248 Iv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea 327 (722)
|+|||+++ + ..+.... ....+...+|++
T Consensus 162 vvdnN~~~-~-------~~~~~~~--------------------------------------------~~~~~~~~~~~a 189 (255)
T cd02012 162 IVDSNRIQ-I-------DGPTDDI--------------------------------------------LFTEDLAKKFEA 189 (255)
T ss_pred EEECCCcc-c-------cCcHhhc--------------------------------------------cCchhHHHHHHH
Confidence 99999973 1 1111000 000123568999
Q ss_pred cCceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEEEEEeeccCCCcccccccchhhccCCCC
Q 004946 328 LGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGAS 389 (722)
Q Consensus 328 ~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kG~G~~~ae~~~~~~~~H~~~~ 389 (722)
|||+++ .+||||+++|.++|+++++. .++|++|+++|.||+|++++|+ ..+||+.++
T Consensus 190 ~G~~~~-~v~G~d~~~l~~al~~a~~~-~~~P~~I~~~t~kg~g~~~~e~---~~~~H~~~~ 246 (255)
T cd02012 190 FGWNVI-EVDGHDVEEILAALEEAKKS-KGKPTLIIAKTIKGKGVPFMEN---TAKWHGKPL 246 (255)
T ss_pred cCCeEE-EECCCCHHHHHHHHHHHHHc-CCCCEEEEEEeecccccCccCC---CccccCCCC
Confidence 999998 79999999999999999873 2789999999999999999886 789998753
No 40
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=100.00 E-value=3.8e-35 Score=284.15 Aligned_cols=154 Identities=48% Similarity=0.738 Sum_probs=148.1
Q ss_pred HHHHHHHHHHhcCCCEEEEecCCCCccchHHHHHhCCCceeecccchHHHHHHHHHHhcCCCeeEEEecHhhHHHHHHHH
Q 004946 406 CFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQV 485 (722)
Q Consensus 406 a~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f~~~~p~R~~d~GIaE~~av~~AaGlA~~G~~p~~~t~~~Fl~ra~dqi 485 (722)
+++++|.+++++||+++++++|++.++++.+|.++||+||+|+||+|++++++|+|+|+.|++||+++|..|++|++|||
T Consensus 2 ~~~~~l~~~~~~~~~~v~~~~Dl~~~~~~~~~~~~~p~r~i~~gIaE~~~vg~A~GlA~~G~~pi~~~~~~f~~ra~dqi 81 (156)
T cd07033 2 AFGEALLELAKKDPRIVALSADLGGSTGLDKFAKKFPDRFIDVGIAEQNMVGIAAGLALHGLKPFVSTFSFFLQRAYDQI 81 (156)
T ss_pred hHHHHHHHHHhhCCCEEEEECCCCCCCCcHHHHHhCCCCeEEeChhHHHHHHHHHHHHHCCCeEEEEECHHHHHHHHHHH
Confidence 68899999999999999999999988899999999999999999999999999999999999999999988899999999
Q ss_pred HHHHhcCCCCEEEEEeCCCc-cCCCCCCcCcHHHHHHhcCCCCcEEEeeCCHHHHHHHHHHHhhhCCCCEEEEecC
Q 004946 486 VNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRYPR 560 (722)
Q Consensus 486 ~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~~~~Pv~ir~~r 560 (722)
++++|++++||+++++++|+ .|++|+|||+.+|+++++++||++|++|+|++|++.++++|++ .++|++||++|
T Consensus 82 ~~~~a~~~~pv~~~~~~~g~~~~~~G~tH~~~~~~a~~~~iPg~~v~~Ps~~~~~~~ll~~a~~-~~~P~~irl~~ 156 (156)
T cd07033 82 RHDVALQNLPVKFVGTHAGISVGEDGPTHQGIEDIALLRAIPNMTVLRPADANETAAALEAALE-YDGPVYIRLPR 156 (156)
T ss_pred HHHHhccCCCeEEEEECCcEecCCCCcccchHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHh-CCCCEEEEeeC
Confidence 99999999999999999988 5699999999999999999999999999999999999999997 56799999986
No 41
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=100.00 E-value=1.4e-32 Score=267.97 Aligned_cols=153 Identities=25% Similarity=0.367 Sum_probs=139.6
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCCCCc----cchHHHHHhCCC-ceeecccchHHHHHHHHHHhcCCCeeEEE-ecHhhH
Q 004946 405 DCFIEALVMEAEKDKDIVVVHAGMEMD----LSLQLFQEKFPE-RYFDVGMAEQHAVTFSAGLACGGLKPFCI-IPSAFL 478 (722)
Q Consensus 405 ~a~~~~L~~~~~~d~~iv~i~ad~~~~----~~l~~f~~~~p~-R~~d~GIaE~~av~~AaGlA~~G~~p~~~-t~~~Fl 478 (722)
++++++|.+++++||+++++++|+..+ ..+++|+++||+ ||||+||+|++++++|+|||++|++||++ +|++|+
T Consensus 1 ~~~~~~l~~~~~~~~~vv~l~~D~~~~~g~~~~~~~~~~~~p~~R~~~~gIaEq~~vg~AaGlA~~G~~pi~~~~~a~Fl 80 (167)
T cd07036 1 QAINEALDEEMERDPRVVVLGEDVGDYGGVFKVTKGLLDKFGPDRVIDTPIAEAGIVGLAVGAAMNGLRPIVEIMFADFA 80 (167)
T ss_pred CHHHHHHHHHHhcCCCEEEECcccccCCCcchHhHHHHHhCCCceEEeCCCcHHHHHHHHHHHHHcCCEEEEEeehHHHH
Confidence 378999999999999999999998642 346899999999 99999999999999999999999999998 699999
Q ss_pred HHHHHHHHHHHhcC--------CCCEEEEEeCCCccCCCCCCcCcHHHHHHhcCCCCcEEEeeCCHHHHHHHHHHHhhhC
Q 004946 479 QRAYDQVVNDVDQQ--------RLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASID 550 (722)
Q Consensus 479 ~ra~dqi~~~~a~~--------~lpVv~v~~~~G~~G~dG~TH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~~ 550 (722)
+|++|||++++|++ ++||+++..++| .+.+|+||+ .+|+++||++|||+|++|+|+.|++.+++++++ .
T Consensus 81 ~ra~dQi~~~~a~~~~~~~~~~~~pv~i~~~~gg-~~~~G~ths-~~~~a~lr~iPg~~V~~Psd~~e~~~~l~~~~~-~ 157 (167)
T cd07036 81 LPAFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGG-GIGGGAQHS-QSLEAWFAHIPGLKVVAPSTPYDAKGLLKAAIR-D 157 (167)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCCEEEEEeCCC-CCCcChhhh-hhHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHh-C
Confidence 99999999999987 499999997666 577899976 567899999999999999999999999999986 6
Q ss_pred CCCEEEEecC
Q 004946 551 DRPVCFRYPR 560 (722)
Q Consensus 551 ~~Pv~ir~~r 560 (722)
++|+++++||
T Consensus 158 ~~P~~~~e~k 167 (167)
T cd07036 158 DDPVIFLEHK 167 (167)
T ss_pred CCcEEEEecC
Confidence 7999999885
No 42
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=99.97 E-value=3.5e-32 Score=269.20 Aligned_cols=163 Identities=37% Similarity=0.515 Sum_probs=145.6
Q ss_pred ccchHHHHHHHHHHHHhcCCCEEEEecCCCCccchHHHHHhC---CCceeecccchHHHHHHHHHHhcCC--CeeEEEec
Q 004946 400 SRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKF---PERYFDVGMAEQHAVTFSAGLACGG--LKPFCIIP 474 (722)
Q Consensus 400 ~~s~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f~~~~---p~R~~d~GIaE~~av~~AaGlA~~G--~~p~~~t~ 474 (722)
+.+|+++|+++|.+++++||+++++++|+++++....+.+.+ |+||+|+||+|++|+++|+|||+.| ++||+.+|
T Consensus 2 k~~~~~a~~~~l~~~~~~d~~vv~~~~D~~~~~~~~~~~~~~~~~~~r~i~~gIaE~~~vg~a~GlA~~G~~~~~~~~~f 81 (178)
T PF02779_consen 2 KISMRDAFGEALAELAEEDPRVVVIGADLGGGTFGVTFGLAFPFGPGRFINTGIAEQNMVGMAAGLALAGGLRPPVESTF 81 (178)
T ss_dssp EEEHHHHHHHHHHHHHHHTTTEEEEESSTHHHHTSTTTTHHBHHTTTTEEE--S-HHHHHHHHHHHHHHSSSEEEEEEEE
T ss_pred CccHHHHHHHHHHHHHhhCCCEEEEECCcCcchhhhhhhccccCCCceEEecCcchhhccceeeeeeecccccceeEeec
Confidence 468999999999999999999999999999888776565555 4599999999999999999999999 77888889
Q ss_pred HhhHH----HHHHHHHHHHhcCCCCEEEEEeCCCc-cCCCCCCcCcHHHHHHhcCCCCcEEEeeCCHHHHHHHHHHHhhh
Q 004946 475 SAFLQ----RAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASI 549 (722)
Q Consensus 475 ~~Fl~----ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~ 549 (722)
++|++ |+++|+.++.+++++||. ++.++|+ .|.+|+|||+.+|+++++++|||+|++|+|+.|++.++++++++
T Consensus 82 ~~F~~~~q~r~~~~~~~~~~~~~~~v~-v~~~~g~~~~~~G~tH~s~~d~~~~~~iPg~~v~~Psd~~e~~~~l~~a~~~ 160 (178)
T PF02779_consen 82 ADFLTPAQIRAFDQIRNDMAYGQLPVP-VGTRAGLGYGGDGGTHHSIEDEAILRSIPGMKVVVPSDPAEAKGLLRAAIRR 160 (178)
T ss_dssp GGGGGGGHHHHHHHHHHHHHHHTS-EE-EEEEESGGGSTTGTTTSSSSHHHHHHTSTTEEEEE-SSHHHHHHHHHHHHHS
T ss_pred cccccccchhhhhhhhhhhhcccceec-ceeecCcccccccccccccccccccccccccccccCCCHHHHHHHHHHHHHh
Confidence 99999 999999999999999999 7788888 78999999999999999999999999999999999999999985
Q ss_pred -CCCCEEEEecCCCc
Q 004946 550 -DDRPVCFRYPRGAI 563 (722)
Q Consensus 550 -~~~Pv~ir~~r~~~ 563 (722)
+++|+|||++|+.+
T Consensus 161 ~~~~P~~ir~~r~~~ 175 (178)
T PF02779_consen 161 ESDGPVYIREPRGLY 175 (178)
T ss_dssp SSSSEEEEEEESSEE
T ss_pred CCCCeEEEEeeHHhC
Confidence 58999999999874
No 43
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=99.96 E-value=7.9e-29 Score=243.00 Aligned_cols=159 Identities=36% Similarity=0.503 Sum_probs=140.5
Q ss_pred chHHHHHHHHHHHHhcCC-CEEEEecCCCCccchHHHHHhCCCc-------eeecccchHHHHHHHHHHhcCCCeeEEEe
Q 004946 402 TYDDCFIEALVMEAEKDK-DIVVVHAGMEMDLSLQLFQEKFPER-------YFDVGMAEQHAVTFSAGLACGGLKPFCII 473 (722)
Q Consensus 402 s~~~a~~~~L~~~~~~d~-~iv~i~ad~~~~~~l~~f~~~~p~R-------~~d~GIaE~~av~~AaGlA~~G~~p~~~t 473 (722)
+++++++++|.+++++|+ +++++++|++.++++.. .+.||+| |+|+||+|++++++|+|+|+.|++||+++
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~v~~~~~D~~~~~~~~~-~~~~~~~~~~~~~R~~~~gIaE~~~vg~a~GlA~~G~~pi~~~ 79 (168)
T smart00861 1 ATRKAFGEALAELAERDPERVVVSGADVGGSTGLDR-GGVFPDTKGLGPGRVIDTGIAEQAMVGFAAGLALAGLRPVVAI 79 (168)
T ss_pred CHHHHHHHHHHHHHhhCCCcEEEEehhhCcCcCCCc-CCccCCCCCCCCccEEEcCcCHHHHHHHHHHHHHcCCCcEEEe
Confidence 468899999999999955 99999999988777663 5567765 99999999999999999999999999999
Q ss_pred cHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCccCCCCCCcCcHHHHHHhcCCCCcEEEeeCCHHHHHHHHHHHhhhCCCC
Q 004946 474 PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRP 553 (722)
Q Consensus 474 ~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~~~~P 553 (722)
|+.|+.|++||++++++++++|+++..+.++..|.+|+|||..+|+++++.+||++|++|+|++|++.++++++...++|
T Consensus 80 ~~~f~~~a~~~~~~~~~~~~~~~v~~~~~g~~~g~~G~tH~~~~~~~~~~~iP~~~v~~P~~~~e~~~~l~~a~~~~~~p 159 (168)
T smart00861 80 FFTFFDRAKDQIRSDGAMGRVPVVVRHDSGGGVGEDGPTHHSQEDEALLRAIPGLKVVAPSDPAEAKGLLRAAIRRDDGP 159 (168)
T ss_pred eHHHHHHHHHHHHHhCcccCCCEEEEecCccccCCCCccccchhHHHHHhcCCCcEEEecCCHHHHHHHHHHHHhCCCCC
Confidence 99999999999999988776666665443344788999999999999999999999999999999999999999755789
Q ss_pred EEEEecCC
Q 004946 554 VCFRYPRG 561 (722)
Q Consensus 554 v~ir~~r~ 561 (722)
++||++++
T Consensus 160 ~~i~~~~~ 167 (168)
T smart00861 160 PVIRLERK 167 (168)
T ss_pred EEEEecCC
Confidence 99999875
No 44
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=99.93 E-value=6.4e-25 Score=233.82 Aligned_cols=228 Identities=16% Similarity=0.150 Sum_probs=165.9
Q ss_pred cCCCHHHHHHHHH---HHHHHH-----HHhHhcCCCCCCCcchHHHHHHHHhhccCCCCcEEEecCCchHHHHHHHhCch
Q 004946 92 KSLTIKELKQLAV---EIRSEL-----SSIVSKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGRR 163 (722)
Q Consensus 92 ~~l~~~~l~~la~---eiR~~i-----i~~~~~~gGh~~~slg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltGr~ 163 (722)
.+++.++|..+.+ .+|.+- ++..++.+|++++++|+-.+.+++-..++...|+++. +|++++|.+.+|..
T Consensus 22 ~~~~~~~l~~~y~~M~l~R~fd~k~~~l~r~G~i~gf~~~~~GqEA~~vg~~~aL~~~~D~i~~--~YR~h~~~l~~G~~ 99 (358)
T COG1071 22 AALSKEELLELYRLMLLIRRFDEKMLQLQRQGKIGGFYHLYIGQEAVQVGAAAALRPGEDWIFP--TYRDHGHLLARGVP 99 (358)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCcCCcccHHHHHHHHHHhcCCCCCEeec--ccCccccceecCCC
Confidence 3566666666533 355443 3334467889999999955555555555534599998 99999999999974
Q ss_pred hhhhHHHhhCCCCCCCCC-CCCCC------CCcC-cCCCcchHHHHHHHHHHHHHcCCCC-eEEEEecCCCcccchHHHH
Q 004946 164 SLIHTLRKKDGISGYTSR-SESEY------DPFN-AGHGCNSVSAGLGMAVARDIKGKRE-CIVTVISNGTTMAGQAYEA 234 (722)
Q Consensus 164 ~~~~~~r~~ggl~g~~~~-~es~~------d~~~-~G~~G~~ls~A~G~A~A~~l~~~~~-~Vv~viGDGa~~~G~~~EA 234 (722)
..=....-+|...|+++. ..+.| .+++ .|.+|++++.|+|+|+|.++++.+. .++|++|||+.++|.+||+
T Consensus 100 ~~~~~a~~~G~~~g~~kGr~~~~h~~~~~~~~~~~~~iVg~Q~~~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG~FhEa 179 (358)
T COG1071 100 LKEIMAELLGKATGPCKGRGGSMHYSDKEKGFLGGSGIVGTQIPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEA 179 (358)
T ss_pred HHHHHHHHhccccCCCCCCCCcccccccccccCCCCceecccccHHHHHHHHHHHhCCCCcEEEEEecCCccccchHHHH
Confidence 322222334556666663 33554 2454 5999999999999999999999554 9999999999999999999
Q ss_pred HHHhhhcCCCEEEEEECCCC-CCCCCccCCCCcchhhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHh
Q 004946 235 MSNAGYLDSNMIVILNDSRH-SLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYA 313 (722)
Q Consensus 235 ln~A~~~~~plivIv~dN~~-~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~ 313 (722)
||+|+.|++|+||+|+||+| .|+|...|+. .
T Consensus 180 lN~A~v~klPvvf~ieNN~yAiSvp~~~q~~-----------------------------------~------------- 211 (358)
T COG1071 180 LNFAAVWKLPVVFVIENNQYAISVPRSRQTA-----------------------------------A------------- 211 (358)
T ss_pred HHHHHHhcCCEEEEEecCCceeecchhhccc-----------------------------------c-------------
Confidence 99999999999999999999 2222110000 0
Q ss_pred hcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhc--CCCCCEEEEEEeeccCCCccc
Q 004946 314 RGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASL--GSMGPVLVHVVTEENRRAEDT 375 (722)
Q Consensus 314 ~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~--~~~~P~lI~v~T~kG~G~~~a 375 (722)
+.......++|+..+ .|||+|+.++.++.++|.+. .+.+|+|||+.|.+-.|...+
T Consensus 212 -----~~~~~ra~aygipgv-~VDG~D~~avy~~~~~A~e~AR~g~GPtLIE~~tYR~~~HS~s 269 (358)
T COG1071 212 -----EIIAARAAAYGIPGV-RVDGNDVLAVYEAAKEAVERARAGEGPTLIEAVTYRYGGHSTS 269 (358)
T ss_pred -----hhHHhhhhccCCCeE-EECCcCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeecCCCCCC
Confidence 001235678899998 68999999998888766542 257899999999988887655
No 45
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=99.92 E-value=2.6e-23 Score=225.10 Aligned_cols=229 Identities=15% Similarity=0.090 Sum_probs=166.2
Q ss_pred chhccCCCHHHHHHHHHH---HHHHHHHhH-----hcCCCCCCCcchHHHHHHHHhhccCCCCcEEEecCCchHHHHHHH
Q 004946 88 PLRLKSLTIKELKQLAVE---IRSELSSIV-----SKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKIL 159 (722)
Q Consensus 88 p~~~~~l~~~~l~~la~e---iR~~ii~~~-----~~~gGh~~~slg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~l 159 (722)
+.++++++.++|.++.+. +|..-..+. .+..|+++++.|+-.+.+++-..++ |+|+++. .|++++|.+.
T Consensus 11 ~~~~~~~~~~~ll~~y~~M~~~R~~e~~~~~~~~~g~i~g~~~~~~GqEa~~vg~~~al~-~~D~~~~--~yR~~~~~la 87 (341)
T CHL00149 11 NSNENNINSMWLLVLYEDMLLGRNFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGVIKLLA-ETDYVCS--TYRDHVHALS 87 (341)
T ss_pred cccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhCC-CCCEEEc--ccccHHHHHH
Confidence 466778888887777544 343322222 2345899999999555555544554 7899998 9999999999
Q ss_pred hCchhhhhHHHhhCCCCCCCCC-CCCCC------CCcC-cCCCcchHHHHHHHHHHHHHcC-------CCCeEEEEecCC
Q 004946 160 TGRRSLIHTLRKKDGISGYTSR-SESEY------DPFN-AGHGCNSVSAGLGMAVARDIKG-------KRECIVTVISNG 224 (722)
Q Consensus 160 tGr~~~~~~~r~~ggl~g~~~~-~es~~------d~~~-~G~~G~~ls~A~G~A~A~~l~~-------~~~~Vv~viGDG 224 (722)
.|....-....-+|.-.|+.+. ..|.| ..++ .|++|+++|+|+|+|+|.++++ +++.|||++|||
T Consensus 88 ~G~~~~~~~ae~~g~~~g~~~Gr~gs~H~~~~~~~~~~~~g~lG~~lp~AvGaa~A~k~~~~~~~~~~~~~vvv~~~GDG 167 (341)
T CHL00149 88 KGVPPKNVMAELFGKETGCSRGRGGSMHIFSAPHNFLGGFAFIGEGIPIALGAAFQSIYRQQVLKEVQPLRVTACFFGDG 167 (341)
T ss_pred cCCCHHHHHHHHcCCCCCCCCCCCCCccccchhcCccCCChhhhccHHHHHHHHHHHHHhccccccCCCCCEEEEEeCCc
Confidence 9974332222234445565442 33433 2344 4899999999999999998887 589999999999
Q ss_pred CcccchHHHHHHHhhhcCCCEEEEEECCCC-CCCCCccCCCCcchhhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHH
Q 004946 225 TTMAGQAYEAMSNAGYLDSNMIVILNDSRH-SLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMH 303 (722)
Q Consensus 225 a~~~G~~~EAln~A~~~~~plivIv~dN~~-~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~ 303 (722)
++++|++||+||+|+.+++|+||||.||++ .++++..+.
T Consensus 168 a~~~G~~~Ealn~A~~~~LPvifvv~NN~~~i~~~~~~~~---------------------------------------- 207 (341)
T CHL00149 168 TTNNGQFFECLNMAVLWKLPIIFVVENNQWAIGMAHHRST---------------------------------------- 207 (341)
T ss_pred hhhhcHHHHHHHHHhhcCCCEEEEEEeCCeeeecchhhee----------------------------------------
Confidence 999999999999999999999999999996 222110000
Q ss_pred HHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHH----HHHHhcCCCCCEEEEEEeeccCCCccc
Q 004946 304 EWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVL----QEVASLGSMGPVLVHVVTEENRRAEDT 375 (722)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al----~~a~~~~~~~P~lI~v~T~kG~G~~~a 375 (722)
..++...++++||+..+ .|||+|..++.+++ +++++ .++|++|++.|.+..|....
T Consensus 208 -------------~~~d~a~~a~a~G~~~~-~Vdg~d~~av~~a~~~A~~~ar~--~~gP~lIev~tyR~~gHs~~ 267 (341)
T CHL00149 208 -------------SIPEIHKKAEAFGLPGI-EVDGMDVLAVREVAKEAVERARQ--GDGPTLIEALTYRFRGHSLA 267 (341)
T ss_pred -------------CCccHHHHHHhCCCCEE-EEeCCCHHHHHHHHHHHHHHHHh--CCCCEEEEEEEecCCCcCCC
Confidence 01223567899999998 78999998776544 45554 57899999999999987654
No 46
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=99.91 E-value=5.3e-23 Score=223.29 Aligned_cols=222 Identities=14% Similarity=0.138 Sum_probs=157.4
Q ss_pred CCCHHHHHHHHHH---HHHHHHHhH-----hcCCCCCCCcchHHHHHHHHhhccCCCCcEEEecCCchHHHHHHHhCchh
Q 004946 93 SLTIKELKQLAVE---IRSELSSIV-----SKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGRRS 164 (722)
Q Consensus 93 ~l~~~~l~~la~e---iR~~ii~~~-----~~~gGh~~~slg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltGr~~ 164 (722)
.++.++|.++.+. +|..-..+. .+..|+++++.|+-.+.+++-..+ .|+|+++. .|+.++|.+..|...
T Consensus 26 ~~~~~~ll~~yr~M~~~R~~e~~~~~l~~~g~i~g~~~~~~GqEA~~vg~~~aL-~~~D~~~~--~yR~hg~~la~G~~~ 102 (362)
T PLN02269 26 ETSKQELVDFFRDMYLMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAI-TKEDAIIT--AYRDHCTHLGRGGTV 102 (362)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhc-CCCCEEEe--chhhHHHHHHcCCCH
Confidence 5566666665443 443332222 233589999999955545444444 47899998 899999999999733
Q ss_pred hhhHHHh-hCCCCCCCC-CCCCCC------CCcC-cCCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHH
Q 004946 165 LIHTLRK-KDGISGYTS-RSESEY------DPFN-AGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAM 235 (722)
Q Consensus 165 ~~~~~r~-~ggl~g~~~-~~es~~------d~~~-~G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAl 235 (722)
.- .+.+ +|...|+++ +..|.| .+++ +|++|+++|.|+|+|+|.++++.++.++|++|||++++|.+||+|
T Consensus 103 ~~-~~ae~~g~~~g~~~GrggsmH~~~~~~~~~~~~~~vG~~~p~A~G~A~A~k~~~~~~v~v~~~GDGa~~eG~~~Eal 181 (362)
T PLN02269 103 LE-VFAELMGRKDGCSRGKGGSMHFYKKDANFYGGHGIVGAQVPLGAGLAFAQKYNKEENVAFALYGDGAANQGQLFEAL 181 (362)
T ss_pred HH-HHHHHcCCCCCCCCCCCCcccccchhcCccccCchhhccccHHHHHHHHHHHhCCCCeEEEEECCCCcccCHHHHHH
Confidence 22 2334 444566554 233444 2344 599999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhc
Q 004946 236 SNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARG 315 (722)
Q Consensus 236 n~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~ 315 (722)
|+|+.+++|+|+||+||++. +.| +.... .. . ..+
T Consensus 182 n~A~~~~lPvvfvveNN~~a-ist-------~~~~~-------~~---------------------~-------~~~--- 215 (362)
T PLN02269 182 NIAALWDLPVIFVCENNHYG-MGT-------AEWRA-------AK---------------------S-------PAY--- 215 (362)
T ss_pred HHhhccCcCEEEEEeCCCEe-ccC-------chhhh-------cc---------------------c-------hHH---
Confidence 99999999999999999982 222 11100 00 0 000
Q ss_pred ccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHh--cCCCCCEEEEEEeeccCCCcc
Q 004946 316 MIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVAS--LGSMGPVLVHVVTEENRRAED 374 (722)
Q Consensus 316 ~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~--~~~~~P~lI~v~T~kG~G~~~ 374 (722)
. -+++++..+ .|||+|+.++.++++++.+ .. ++|++|++.|.+-.|...
T Consensus 216 ------~--~~~~~~p~~-~VDG~D~~av~~a~~~A~~~aR~-~gP~lIe~~tyR~~gHs~ 266 (362)
T PLN02269 216 ------Y--KRGDYVPGL-KVDGMDVLAVKQACKFAKEHALS-NGPIVLEMDTYRYHGHSM 266 (362)
T ss_pred ------H--HhhcCCCeE-EECCCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCcCCCcCC
Confidence 0 022345555 7899999999999987654 23 789999999999988753
No 47
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=99.90 E-value=2.1e-22 Score=222.77 Aligned_cols=223 Identities=14% Similarity=0.138 Sum_probs=159.9
Q ss_pred CCCHHHHHHHHHH---HHHHHHHhH-----hcCCCCCCCcchHHHHHHHHhhccCCCCcEEEecCCchHHHHHHHhCchh
Q 004946 93 SLTIKELKQLAVE---IRSELSSIV-----SKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGRRS 164 (722)
Q Consensus 93 ~l~~~~l~~la~e---iR~~ii~~~-----~~~gGh~~~slg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltGr~~ 164 (722)
+++.++|.++.+. +|..-..+. ++..|+++++.|+-.+.+++-..++ |.|+++. .|+.++|.+..|...
T Consensus 82 ~ls~e~ll~lyr~M~~~R~fEe~~~~l~~~Gki~g~~h~~~GqEA~~vg~~~aL~-~~D~v~~--~yR~h~~~La~G~~~ 158 (433)
T PLN02374 82 LVTREEGLELYEDMVLGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLK-KDDSVVS--TYRDHVHALSKGVPA 158 (433)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceeccCCCCCcHHHHHHHHHHcC-CCCEEEc--cCcChHHhhhcCCCH
Confidence 5566666666443 343322222 2345889999999555555555554 7899987 899999999888733
Q ss_pred hhhHHHh-hCCCCCCCC-CCCCCC------CCcC-cCCCcchHHHHHHHHHHHHHcC-------CCCeEEEEecCCCccc
Q 004946 165 LIHTLRK-KDGISGYTS-RSESEY------DPFN-AGHGCNSVSAGLGMAVARDIKG-------KRECIVTVISNGTTMA 228 (722)
Q Consensus 165 ~~~~~r~-~ggl~g~~~-~~es~~------d~~~-~G~~G~~ls~A~G~A~A~~l~~-------~~~~Vv~viGDGa~~~ 228 (722)
. ..+.+ +|...|+++ +..+.| ..++ .|++|+++|.|+|+|+|.++++ +++.|||++|||++++
T Consensus 159 ~-~~mael~Gk~~g~~~GrggsmH~~~~~~~~~g~~g~lG~~lP~AvGaA~A~k~~~~~~~~~~~~~vvv~~~GDGa~~e 237 (433)
T PLN02374 159 R-AVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCNN 237 (433)
T ss_pred H-HHHHHHcCCCCCCCCCCCCcCccCchhhCCCCCceeccCchhHHHHHHHHHHHhhccccccCCCCEEEEEECCCcccc
Confidence 2 22334 344555444 223433 2333 4899999999999999999875 4889999999999999
Q ss_pred chHHHHHHHhhhcCCCEEEEEECCCCC-CCCCccCCCCcchhhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHH
Q 004946 229 GQAYEAMSNAGYLDSNMIVILNDSRHS-LHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAA 307 (722)
Q Consensus 229 G~~~EAln~A~~~~~plivIv~dN~~~-s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~ 307 (722)
|++||+||+|+.+++|+||||.||++. +.++..+..
T Consensus 238 G~f~EaLn~A~~~~LPvIfVV~NN~yaig~~~~~~t~------------------------------------------- 274 (433)
T PLN02374 238 GQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATS------------------------------------------- 274 (433)
T ss_pred ChHHHHHHHHHHhCCCEEEEEeCCCEeecceeeeccC-------------------------------------------
Confidence 999999999999999999999999962 222111000
Q ss_pred HHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHH----HHHHhcCCCCCEEEEEEeeccCCCccc
Q 004946 308 KVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVL----QEVASLGSMGPVLVHVVTEENRRAEDT 375 (722)
Q Consensus 308 ~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al----~~a~~~~~~~P~lI~v~T~kG~G~~~a 375 (722)
.++...+++++|+..+ .|||+|+.++.+++ +.+++ .++|++|++.|.+.+|....
T Consensus 275 ----------~~dia~~A~a~G~~~~-~VDG~D~~av~~a~~~A~~~Ar~--g~gP~LIe~~tyR~~GHs~~ 333 (433)
T PLN02374 275 ----------DPEIWKKGPAFGMPGV-HVDGMDVLKVREVAKEAIERARR--GEGPTLVECETYRFRGHSLA 333 (433)
T ss_pred ----------CCCHHHHHHhcCCcEE-EECCCCHHHHHHHHHHHHHHHHH--cCCCEEEEEEEEecCCcCCC
Confidence 1123557889999998 79999999887554 55554 57999999999999998654
No 48
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=99.90 E-value=1.9e-22 Score=215.07 Aligned_cols=206 Identities=18% Similarity=0.158 Sum_probs=157.2
Q ss_pred HhHhcCCCCCCCcchHHHHHHHHhhccCCCCcEEEecCCchHHHHHHHhCchhhhhHHHhh-CCCCCCCCC-CCCCC---
Q 004946 112 SIVSKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKK-DGISGYTSR-SESEY--- 186 (722)
Q Consensus 112 ~~~~~~gGh~~~slg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltGr~~~~~~~r~~-ggl~g~~~~-~es~~--- 186 (722)
+...+..|+++++.|+-.+.+++-..++ |+|.++. .|++++|.+.+|.... ..+.++ |...|+.+. ..+.|
T Consensus 19 ~~~g~~~~~~~~~~GqEa~~vg~~~~l~-~~D~~~~--~yR~~~~~la~G~~~~-~~~~e~~g~~~g~~~G~~g~~h~~~ 94 (293)
T cd02000 19 YRQGKIGGFYHLSIGQEAVAVGVAAALR-PGDWVFP--TYRDHGHALARGVDLK-EMLAELFGKETGPCKGRGGSMHIGD 94 (293)
T ss_pred HHCCccccccCCCCChHHHHHHHHHHCC-CCCEEEe--cchhHHHHHHcCCCHH-HHHHHHcCCCCCCCCCCCCCCCCCc
Confidence 3344566889999999777777777776 7899887 8999999999997332 223443 445554442 22322
Q ss_pred ----CCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccC
Q 004946 187 ----DPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEE 262 (722)
Q Consensus 187 ----d~~~~G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~ 262 (722)
...+.|++|+++|+|+|+|+|.++.+++++|||++|||++++|.++|+||+|+.+++|+++||+||++. +.+
T Consensus 95 ~~~~~~~~~g~lG~~~p~a~G~a~a~k~~~~~~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~vv~NN~~~-i~~--- 170 (293)
T cd02000 95 KEKNFFGGNGIVGGQVPLAAGAALALKYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFVCENNGYA-IST--- 170 (293)
T ss_pred hhcCccccccccccchhHHHHHHHHHHHhCCCCEEEEEeCCCccccchHHHHHHHHHhhCCCEEEEEeeCCee-ccC---
Confidence 234579999999999999999999999999999999999999999999999999999999999999872 211
Q ss_pred CCCcchhhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHH
Q 004946 263 SPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIE 342 (722)
Q Consensus 263 ~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~ 342 (722)
+.. +. .-.++...+++++|+.++ .|||+|++
T Consensus 171 ----~~~-------~~-------------------------------------~~~~~~~~~a~a~G~~~~-~Vdg~d~~ 201 (293)
T cd02000 171 ----PTS-------RQ-------------------------------------TAGTSIADRAAAYGIPGI-RVDGNDVL 201 (293)
T ss_pred ----CHH-------HH-------------------------------------hCCccHHHHHHhCCCCEE-EECCCCHH
Confidence 100 00 001223568899999998 89999999
Q ss_pred HHHHHHHHHHhc--CCCCCEEEEEEeeccCCCcc
Q 004946 343 DLISVLQEVASL--GSMGPVLVHVVTEENRRAED 374 (722)
Q Consensus 343 ~l~~al~~a~~~--~~~~P~lI~v~T~kG~G~~~ 374 (722)
++.++++++.+. ..++|++|++.|.+.+|...
T Consensus 202 ~v~~a~~~A~~~ar~~~~P~lIev~~~r~~gHs~ 235 (293)
T cd02000 202 AVYEAAKEAVERARAGGGPTLIEAVTYRLGGHST 235 (293)
T ss_pred HHHHHHHHHHHHHHccCCCEEEEEEEeccCCCCC
Confidence 998888776531 24789999999999998763
No 49
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.89 E-value=5.8e-22 Score=212.90 Aligned_cols=203 Identities=17% Similarity=0.207 Sum_probs=151.6
Q ss_pred cCCCCCCCcchHHHHHHHHhhccCCCCcEEEecCCchHHHHHHHhCchhhhhHHHhh-CCCCCCCCC-CCCCC------C
Q 004946 116 KTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKK-DGISGYTSR-SESEY------D 187 (722)
Q Consensus 116 ~~gGh~~~slg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltGr~~~~~~~r~~-ggl~g~~~~-~es~~------d 187 (722)
+..|+++++.|+-.+.+++-..+ .|+|+++. .|+.++|.+..|.... ..+.++ |...|++.. ..+.| .
T Consensus 29 ~~~~~~~~~~GqEa~~vg~~~al-~~~D~~~~--~yR~~~~~la~G~~~~-~~~~~~~g~~~g~~~Gr~g~~h~~~~~~~ 104 (315)
T TIGR03182 29 KIGGFCHLYIGQEAVAVGLIAAL-KPDDYVIT--SYRDHGHALARGVPPK-EVMAELTGRATGCSKGKGGSMHMFDREKN 104 (315)
T ss_pred ccccccCCCCChHHHHHHHHHhC-CCCCEEEe--chhhHHHHHHcCCCHH-HHHHHHcCCCCCCCCCCCCCCCcCchhhC
Confidence 45688999999955545444444 47899998 8999999999997332 233343 445554442 23433 2
Q ss_pred CcC-cCCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCc
Q 004946 188 PFN-AGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKT 266 (722)
Q Consensus 188 ~~~-~G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~ 266 (722)
.++ .|++|+++|+|+|+|+|.+++++++.|||++|||++++|.+||+||+|+.+++|+++||.||++. +.|
T Consensus 105 ~~~~~g~~G~~lp~AiGaa~A~~~~~~~~~vv~~~GDGa~~~g~~~ealn~A~~~~lPvi~vv~NN~yg-~s~------- 176 (315)
T TIGR03182 105 FYGGHGIVGAQVPLATGLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWKLPVIFVIENNLYA-MGT------- 176 (315)
T ss_pred cccCcCcccccccHHHHHHHHHHHhCCCCEEEEEeCCCcccccHHHHHHHHhhccCcCEEEEEEcCCcc-ccC-------
Confidence 333 58999999999999999999999999999999999999999999999999999999999999872 211
Q ss_pred chhhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHH
Q 004946 267 SINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLIS 346 (722)
Q Consensus 267 ~~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~ 346 (722)
+.. +. .-.++...++++||+.++ .|||+|+.++.+
T Consensus 177 ~~~-------~~-------------------------------------~~~~~~a~~A~a~G~~~~-~Vdg~d~~av~~ 211 (315)
T TIGR03182 177 SVE-------RS-------------------------------------SSVTDLYKRGESFGIPGE-RVDGMDVLAVRE 211 (315)
T ss_pred CHH-------HH-------------------------------------hCCcCHHHHHHhCCCCEE-EECCCCHHHHHH
Confidence 110 00 001223568899999998 799999998888
Q ss_pred HHHHHHh--cCCCCCEEEEEEeeccCCCccc
Q 004946 347 VLQEVAS--LGSMGPVLVHVVTEENRRAEDT 375 (722)
Q Consensus 347 al~~a~~--~~~~~P~lI~v~T~kG~G~~~a 375 (722)
+++++.+ ...++|++|++.|.+-.|....
T Consensus 212 a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~ 242 (315)
T TIGR03182 212 AAKEAVERARSGKGPILLEMKTYRFRGHSMS 242 (315)
T ss_pred HHHHHHHHHHccCCCEEEEEeCCcCCCCCCC
Confidence 7776543 1257899999999988887543
No 50
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.88 E-value=2.8e-21 Score=209.72 Aligned_cols=223 Identities=17% Similarity=0.181 Sum_probs=157.4
Q ss_pred ccCCCHHHHHHHHHH---HHHHHHHhH-----hcCCCCCCCcchHHHHHHHHhhccCCCCcEEEecCCchHHHHHHHhCc
Q 004946 91 LKSLTIKELKQLAVE---IRSELSSIV-----SKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGR 162 (722)
Q Consensus 91 ~~~l~~~~l~~la~e---iR~~ii~~~-----~~~gGh~~~slg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltGr 162 (722)
+.+++.++|.++.+. +|..-..+. ++. |.++++.|+-.+.+++-..++ |+|+++. .|++++|.+..|.
T Consensus 18 ~~~~~~~~l~~~y~~m~~~R~~e~~~~~~~~~g~i-~~~~~~~GqEa~~vg~~~al~-~~D~~~~--~yR~h~~~l~~G~ 93 (341)
T TIGR03181 18 APDLSDEELVELYRDMVLTRRFDTKALALQRQGRL-GTYAPNLGQEAAQVGSALALR-KDDWVFP--SYRDHAAMLARGV 93 (341)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCce-ecccCCCChHHHHHHHHHHcC-CCCEEEc--chhhHHHHHHcCC
Confidence 345666666655443 443322222 233 678899999555555545554 7899987 8999999999997
Q ss_pred hhhhhHHHh-hCCCCCCCCCCCCCCCCcC-cCCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhh
Q 004946 163 RSLIHTLRK-KDGISGYTSRSESEYDPFN-AGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGY 240 (722)
Q Consensus 163 ~~~~~~~r~-~ggl~g~~~~~es~~d~~~-~G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~ 240 (722)
...- .+.+ +|...|... ......+| +|++|+++|+|+|+|+|.++.+++++|||++|||+++.|.++|+||+|+.
T Consensus 94 ~~~~-~~ae~~g~~~g~~~--~~~~~~~g~~~~vG~~lp~AiGaAla~k~~~~~~~vv~~~GDGa~~~g~~~EaL~tA~~ 170 (341)
T TIGR03181 94 PLVE-ILLYWRGDERGSWD--PEGVNILPPNIPIGTQYLHAAGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEALNFAGV 170 (341)
T ss_pred CHHH-HHHHhcCcCcCCCC--chhcCccCCCchHhcchhHHHhHHHHHHhhCCCCEEEEEecCCccccChHHHHHHHHhc
Confidence 3321 1223 232333211 12234455 48899999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCC
Q 004946 241 LDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQ 320 (722)
Q Consensus 241 ~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~ 320 (722)
+++|+++||.||++. +.| +... ....++
T Consensus 171 ~~LPvi~Vv~NN~~~-~~~-------~~~~--------------------------------------------~~~~~d 198 (341)
T TIGR03181 171 FKAPVVFFVQNNQWA-ISV-------PRSK--------------------------------------------QTAAPT 198 (341)
T ss_pred cCCCEEEEEECCCCc-ccc-------chhh--------------------------------------------hhCCcC
Confidence 999999999999972 111 0000 000123
Q ss_pred hhhhHhhcCceEEeecCCCCHHHHHHHHHH----HHhcCCCCCEEEEEEeeccCCCccc
Q 004946 321 GSTLFEELGLYYIGPVDGHNIEDLISVLQE----VASLGSMGPVLVHVVTEENRRAEDT 375 (722)
Q Consensus 321 ~~~lfea~G~~~~~~vdGhd~~~l~~al~~----a~~~~~~~P~lI~v~T~kG~G~~~a 375 (722)
...++++||+.++ .|||+|..++.+++++ +++ .++|++|++.|.+-.|....
T Consensus 199 ~~~~a~a~G~~~~-~Vdg~d~~av~~a~~~A~~~a~~--~~gP~lIev~t~R~~gH~~~ 254 (341)
T TIGR03181 199 LAQKAIAYGIPGV-QVDGNDVLAVYAVTKEAVERARS--GGGPTLIEAVTYRLGPHTTA 254 (341)
T ss_pred HHHHHhhCCCCEE-EECCCCHHHHHHHHHHHHHHHHc--CCCCEEEEEEeecCCCCCCC
Confidence 3568899999998 7999999776665544 444 57999999999998876544
No 51
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=99.88 E-value=8.3e-21 Score=220.85 Aligned_cols=254 Identities=19% Similarity=0.248 Sum_probs=192.0
Q ss_pred HHHHHhCC--CceeecccchHHHHHHHHHHhcCCCeeEEEecHhhHHHHHHHHHHHHh--cCCCCEEEEEeCCCccCCCC
Q 004946 435 QLFQEKFP--ERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVD--QQRLPVRFVITSAGLVGSDG 510 (722)
Q Consensus 435 ~~f~~~~p--~R~~d~GIaE~~av~~AaGlA~~G~~p~~~t~~~Fl~ra~dqi~~~~a--~~~lpVv~v~~~~G~~G~dG 510 (722)
+.+.+..+ +-++....+|.+++++|.|+|++|.|.+++|.+..+.++.|++.. ++ -+++|++++...+. | .+
T Consensus 36 e~l~~~~~~~~~~~~~~~~E~~a~~~~~GAs~aG~ra~t~ts~~Gl~~~~e~l~~-~~~~g~~~~iV~~~~~~~--g-p~ 111 (595)
T TIGR03336 36 DTLAKVAKRAGVYFEWSVNEKVAVEVAAGAAWSGLRAFCTMKHVGLNVAADPLMT-LAYTGVKGGLVVVVADDP--S-MH 111 (595)
T ss_pred HHHHHhhhhccEEEEECcCHHHHHHHHHHHHhcCcceEEEccCCchhhhHHHhhh-hhhhcCcCceEEEEccCC--C-Cc
Confidence 44444333 467788899999999999999999999999999999999999865 45 34777777663321 2 24
Q ss_pred CCcCcHHHHHHhcCCCCcEEEeeCCHHHHHHHHHHHhhhCC---CCEEEEecCCCc---ccccCCCC----------CCC
Q 004946 511 PTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDD---RPVCFRYPRGAI---VRTDLPGY----------RGI 574 (722)
Q Consensus 511 ~TH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~~~---~Pv~ir~~r~~~---~~~~~p~~----------~~~ 574 (722)
+|+....|+.+.+. .++.|++|+|+||+++++.+||+.++ -||+++.+.... ....++.. .+.
T Consensus 112 ~~~~~q~d~~~~~~-~~~~vl~p~~~qE~~d~~~~Af~lae~~~~PV~v~~d~~l~h~~~~v~~~~~~~~~~~~~~~~~~ 190 (595)
T TIGR03336 112 SSQNEQDTRHYAKF-AKIPCLEPSTPQEAKDMVKYAFELSEKFGLPVILRPTTRISHMRGDVELGEIPKEEVVKGFEKDP 190 (595)
T ss_pred cchhhHhHHHHHHh-cCCeEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEeeeeccceeeEecCCCcccccccCCCCCh
Confidence 88888888777665 58889999999999999999998644 599998764210 01111100 000
Q ss_pred C-c---c-------------------cccc--E-EEEEeCCcEEEEEechhhHHHHHHHHHHHhcCCcEEEeecCccccc
Q 004946 575 P-I---E-------------------EIGK--G-KVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPL 628 (722)
Q Consensus 575 ~-~---~-------------------~igk--~-~vl~eG~dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPl 628 (722)
. + . .... . .+..+++|++||++|++++.+++|++.| |++++|++++++|||
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~iv~~G~~~~~a~ea~~~~---Gi~~~v~~~~~i~Pl 267 (595)
T TIGR03336 191 ERYVMVPAIARVRHKKLLSKQHKLREELNESPLNRLEINGAKIGVIASGIAYNYVKEALERL---GVDVSVLKIGFTYPV 267 (595)
T ss_pred hhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCceeccCCCCEEEEEcCHHHHHHHHHHHHc---CCCeEEEEeCCCCCC
Confidence 0 0 0 0001 1 1222467999999999999999988765 999999999999999
Q ss_pred hHHHHHHHhcCCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHH
Q 004946 629 DIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATAL 708 (722)
Q Consensus 629 d~e~i~~~~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~v~~ig~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~ 708 (722)
|++.|++++++++.||||||+. +++++.+..++.+.+ .+++++|++|.|++ +..+||++.|.++++
T Consensus 268 d~~~i~~~~~~~~~vivvEe~~-~~~~~~~~~~~~~~~-----~~v~~~G~~d~fi~--------~~~~Ld~~~i~~~i~ 333 (595)
T TIGR03336 268 PEGLVEEFLSGVEEVLVVEELE-PVVEEQVKALAGTAG-----LNIKVHGKEDGFLP--------REGELNPDIVVNALA 333 (595)
T ss_pred CHHHHHHHHhcCCeEEEEeCCc-cHHHHHHHHHHHhcC-----CCeEEecccCCccC--------cccCcCHHHHHHHHH
Confidence 9999999999999999999998 566666665555433 37889999999998 457899999999998
Q ss_pred HH
Q 004946 709 SL 710 (722)
Q Consensus 709 ~l 710 (722)
++
T Consensus 334 ~~ 335 (595)
T TIGR03336 334 KF 335 (595)
T ss_pred Hh
Confidence 75
No 52
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=99.88 E-value=6.7e-21 Score=207.31 Aligned_cols=272 Identities=17% Similarity=0.104 Sum_probs=193.3
Q ss_pred cCCCEEEEecCCCCccc---hHHHHHhCCCceeecccchHHHHHHHHHHhcCCCeeEEEecHhhHHHHHHHHHHHHhcCC
Q 004946 417 KDKDIVVVHAGMEMDLS---LQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQR 493 (722)
Q Consensus 417 ~d~~iv~i~ad~~~~~~---l~~f~~~~p~R~~d~GIaE~~av~~AaGlA~~G~~p~~~t~~~Fl~ra~dqi~~~~a~~~ 493 (722)
...+++..=|=.+.+.- +..+.+++...|++ .-+|.+++++|.|+|++|.|.+++|.+.++.++++++ ..++..+
T Consensus 20 ag~~~~a~YPiTPsTeI~e~la~~~~~~~~~~vq-~E~E~aA~~~a~GAs~aG~Ra~taTSg~Gl~lm~E~l-~~a~~~e 97 (352)
T PRK07119 20 AGCRCYFGYPITPQSEIPEYMSRRLPEVGGVFVQ-AESEVAAINMVYGAAATGKRVMTSSSSPGISLKQEGI-SYLAGAE 97 (352)
T ss_pred hCCCEEEEeCCCCchHHHHHHHHHHHHhCCEEEe-eCcHHHHHHHHHHHHhhCCCEEeecCcchHHHHHHHH-HHHHHcc
Confidence 35566554333333222 23444456677888 7999999999999999999999999999999999876 7889999
Q ss_pred CCEEEEE-eCCCccCCCCCCcCcHHHHHHhcC-----CCCcEEEeeCCHHHHHHHHHHHhhhCC---CCEEEEecCCCc-
Q 004946 494 LPVRFVI-TSAGLVGSDGPTQCGAFDITFMSC-----LPNMIVMAPSDEDELVDMVATVASIDD---RPVCFRYPRGAI- 563 (722)
Q Consensus 494 lpVv~v~-~~~G~~G~dG~TH~~~~d~a~~~~-----iP~l~V~~Psd~~E~~~~l~~a~~~~~---~Pv~ir~~r~~~- 563 (722)
+|++++. .|+|. + -|.|+....|+.+.+. --++.|++|+|+||++++...|++.++ -||+++.+....
T Consensus 98 ~P~v~v~v~R~~p-~-~g~t~~eq~D~~~~~~~~ghgd~~~~vl~p~~~qEa~d~~~~Af~lAE~~~~PViv~~D~~lsh 175 (352)
T PRK07119 98 LPCVIVNIMRGGP-G-LGNIQPSQGDYFQAVKGGGHGDYRLIVLAPSSVQEMVDLTMLAFDLADKYRNPVMVLGDGVLGQ 175 (352)
T ss_pred CCEEEEEeccCCC-C-CCCCcchhHHHHHHHhcCCCCCcceEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcchhhhC
Confidence 9977776 44443 2 3458888889766532 224899999999999999999998654 499998764210
Q ss_pred --ccccCCC------CC-CCCccc-----------------------------c-------ccEE-EEEeCCcEEEEEec
Q 004946 564 --VRTDLPG------YR-GIPIEE-----------------------------I-------GKGK-VLVEGKDVALLGYG 597 (722)
Q Consensus 564 --~~~~~p~------~~-~~~~~~-----------------------------i-------gk~~-vl~eG~dv~lva~G 597 (722)
....+|+ ++ ...+.+ . ...+ +..++.|++||+||
T Consensus 176 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~e~~~~~dad~~iva~G 255 (352)
T PRK07119 176 MMEPVEFPPRKKRPLPPKDWAVTGTKGRRKNIITSLFLDPEELEKHNLRLQEKYAKIEENEVRYEEYNTEDAELVLVAYG 255 (352)
T ss_pred ceeeecCCchhhcccCCCCCccCCCCCCceeccCCcccCHHHHHHHHHHHHHHHHHHHhhCCcceeecCCCCCEEEEEcC
Confidence 0011110 00 000000 0 0001 11246899999999
Q ss_pred hhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcCCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEE
Q 004946 598 AMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPI 677 (722)
Q Consensus 598 s~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~v~~i 677 (722)
+++..+++|++.|+++|++++|++++++||||.+.|.++++++++|+|+|++ .|.+..+|...+.. ..++..+
T Consensus 256 s~~~~a~eA~~~L~~~Gi~v~vi~~~~l~Pfp~~~i~~~l~~~k~VivvE~n-~g~l~~ei~~~~~~------~~~~~~i 328 (352)
T PRK07119 256 TSARIAKSAVDMAREEGIKVGLFRPITLWPFPEKALEELADKGKGFLSVEMS-MGQMVEDVRLAVNG------KKPVEFY 328 (352)
T ss_pred ccHHHHHHHHHHHHHcCCeEEEEeeceecCCCHHHHHHHHhCCCEEEEEeCC-ccHHHHHHHHHhCC------CCceeEE
Confidence 9999999999999999999999999999999999999999999999999998 46677777644321 1122223
Q ss_pred ecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHhh
Q 004946 678 VLPDNYIEHASPTQQLALAGLTGHHIAATALSLLG 712 (722)
Q Consensus 678 g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~ll~ 712 (722)
+-.+ | .-++++.|.+.++++++
T Consensus 329 ~k~~-----G--------~~~~~~~i~~~~~~~~~ 350 (352)
T PRK07119 329 GRMG-----G--------MVPTPEEILEKIKEILG 350 (352)
T ss_pred eccC-----C--------EeCCHHHHHHHHHHHhc
Confidence 3211 1 12678999999988874
No 53
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=99.88 E-value=1.6e-23 Score=195.02 Aligned_cols=123 Identities=34% Similarity=0.569 Sum_probs=114.8
Q ss_pred ccEEEEEeCCcEEEEEechhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcCCCeEEEEcCCC-CCChHHHH
Q 004946 580 GKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-IGGFGSHV 658 (722)
Q Consensus 580 gk~~vl~eG~dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~~~vvvvEe~~-~gG~gs~v 658 (722)
||+.++++|+|++|||||++++.|++|++.|+++||+++|+|++|++|||++.+.++++++++++|+||+. .||||+.|
T Consensus 1 Gk~~~~~~g~di~iia~G~~~~~al~A~~~L~~~Gi~~~vi~~~~i~P~d~~~l~~~~~~~~~vvvvee~~~~gg~g~~i 80 (124)
T PF02780_consen 1 GKAEVLREGADITIIAYGSMVEEALEAAEELEEEGIKAGVIDLRTIKPFDEEALLESLKKTGRVVVVEEHYKIGGLGSAI 80 (124)
T ss_dssp TEEEEEESSSSEEEEEETTHHHHHHHHHHHHHHTTCEEEEEEEEEEESSBHHHHHHHSHHHHHHHHSETCESEEEEHSSH
T ss_pred CEEEEEeCCCCEEEEeehHHHHHHHHHHHHHHHcCCceeEEeeEEEecccccchHHHHHHhccccccccccccccHHHHH
Confidence 68889999999999999999999999999999999999999999999999999999999999999999998 79999999
Q ss_pred HHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHH
Q 004946 659 SHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHI 703 (722)
Q Consensus 659 ~~~l~~~~~~~~~~~v~~ig~~d~f~~~g~~~~l~~~~gl~~~~I 703 (722)
++++.++++.....++.++|.||.|+++| ++++++.+|+|+++|
T Consensus 81 ~~~l~~~~~~~~~~~~~~~g~~d~~~~~~-~~~~~~~~gl~~e~I 124 (124)
T PF02780_consen 81 AEYLAENGFNDLDAPVKRLGVPDEFIPHG-RAELLEAFGLDAESI 124 (124)
T ss_dssp HHHHHHHTTTGEEEEEEEEEE-SSSHHSS-HHHHHHHTTHSHHHH
T ss_pred HHHHHHhCCccCCCCeEEEEECCCcccCc-HHHHHHHCcCCCCcC
Confidence 99999988743347899999999999999 999999999999987
No 54
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=99.87 E-value=5.1e-21 Score=204.13 Aligned_cols=204 Identities=18% Similarity=0.213 Sum_probs=145.4
Q ss_pred cCCCCCCCcchHHHHHHHHhhccCCCCcEEEecCCchHHHHHHHhCchhhhhHHHhh-CCCCCCCCCCC------CCCCC
Q 004946 116 KTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKK-DGISGYTSRSE------SEYDP 188 (722)
Q Consensus 116 ~~gGh~~~slg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltGr~~~~~~~r~~-ggl~g~~~~~e------s~~d~ 188 (722)
+..|..+++.|+-.+.+++...++ |.|+++. .|++.++.+..|.... ..+.++ |...|...... .....
T Consensus 21 ~~~g~~~~~~GqEa~~v~~~~~l~-~~D~v~~--~yR~~~~~la~g~~~~-~~~~e~~g~~~g~~g~~~~~~~~~~~~~~ 96 (300)
T PF00676_consen 21 GRFGFYHLSAGQEAIQVAAAAALR-PGDWVFP--YYRDHGHALARGIDLE-EIFAELLGKAKGHGGGRHPLHFSDKGLNI 96 (300)
T ss_dssp TSSSCTT-TTTCHHHHHHHHHHSC-TTSEEEE--CSTTHHHHHHTTT-HH-HHHHHHHTBTTSTTTTGCTTEEEBTTTTB
T ss_pred CCeEEecchHHHHHHHHHHHHhcc-CCCEEEe--cccchhhhhhcccccc-chhHHhcCcccCCCCCcccccccccccee
Confidence 456899999999777776766665 7799998 6999999998886321 222232 22222111111 11123
Q ss_pred c-CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcc
Q 004946 189 F-NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTS 267 (722)
Q Consensus 189 ~-~~G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~ 267 (722)
+ +.+++|.++|.|+|+|+|.++++.+..++|++|||+.++|.+||+||+|+.+++|+||||.||++ ++.| +
T Consensus 97 ~~~~~~vg~~~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~EalN~A~~~~lPvifvveNN~~-aist-------~ 168 (300)
T PF00676_consen 97 LGASSPVGAQVPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHEALNLAALWKLPVIFVVENNQY-AIST-------P 168 (300)
T ss_dssp EEEESSTTTHHHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHHHHHHHTTTSEEEEEEEESE-ETTE-------E
T ss_pred eeccccccccCccccchhHhhhhcCCceeEEEEecCcccccCccHHHHHHHhhccCCeEEEEecCCc-cccc-------C
Confidence 3 36999999999999999999999999999999999999999999999999999999999999998 2222 1
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHH
Q 004946 268 INALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISV 347 (722)
Q Consensus 268 ~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~a 347 (722)
.... .-.+....+++++|++.+ .|||+|+.++.++
T Consensus 169 ~~~~--------------------------------------------~~~~~~~~~a~~~gip~~-~VDG~D~~av~~a 203 (300)
T PF00676_consen 169 TEEQ--------------------------------------------TASPDIADRAKGYGIPGI-RVDGNDVEAVYEA 203 (300)
T ss_dssp HHHH--------------------------------------------CSSSTSGGGGGGTTSEEE-EEETTSHHHHHHH
T ss_pred cccc--------------------------------------------ccccchhhhhhccCCcEE-EECCEeHHHHHHH
Confidence 1100 001122567889999998 8999999999988
Q ss_pred HHHHHh--cCCCCCEEEEEEeeccCCCcccc
Q 004946 348 LQEVAS--LGSMGPVLVHVVTEENRRAEDTQ 376 (722)
Q Consensus 348 l~~a~~--~~~~~P~lI~v~T~kG~G~~~ae 376 (722)
++++.+ ...++|++||+.|.+-.|.....
T Consensus 204 ~~~A~~~~R~g~gP~lie~~tyR~~gHs~~D 234 (300)
T PF00676_consen 204 AKEAVEYARAGKGPVLIEAVTYRLRGHSESD 234 (300)
T ss_dssp HHHHHHHHHTTT--EEEEEEE--SS-SSTTS
T ss_pred HHHHHHHHhcCCCCEEEEEeeccCCCCCCCC
Confidence 776654 22579999999999888876543
No 55
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=99.85 E-value=7.3e-20 Score=200.72 Aligned_cols=218 Identities=17% Similarity=0.249 Sum_probs=164.5
Q ss_pred hCCCceeecccchHHHHHHHHHHhcCCCeeEEEecHhhHHHHHHHHHHHHhcCCCCEEEEE-eCCCccCCCCCCcCcHHH
Q 004946 440 KFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVI-TSAGLVGSDGPTQCGAFD 518 (722)
Q Consensus 440 ~~p~R~~d~GIaE~~av~~AaGlA~~G~~p~~~t~~~Fl~ra~dqi~~~~a~~~lpVv~v~-~~~G~~G~dG~TH~~~~d 518 (722)
+....|+.+- +|.+++++|.|+|++|.|.+++|.+..+.++.+++ ..++..++|++++. +|+|. +..-||++...|
T Consensus 46 ~~~~~~vq~E-~E~aA~~~a~GAs~aG~Ra~TaTSg~Gl~lm~E~~-~~a~~~e~P~Viv~~~R~gp-~tg~p~~~~q~D 122 (376)
T PRK08659 46 KVGGVFIQME-DEIASMAAVIGASWAGAKAMTATSGPGFSLMQENI-GYAAMTETPCVIVNVQRGGP-STGQPTKPAQGD 122 (376)
T ss_pred hhCCEEEEeC-chHHHHHHHHhHHhhCCCeEeecCCCcHHHHHHHH-HHHHHcCCCEEEEEeecCCC-CCCCCCCcCcHH
Confidence 3445788887 99999999999999999999999999999999876 56677899977766 56665 223478888888
Q ss_pred HHHhc-----CCCCcEEEeeCCHHHHHHHHHHHhhhCC---CCEEEEecCCC---cccccCC-------------C----
Q 004946 519 ITFMS-----CLPNMIVMAPSDEDELVDMVATVASIDD---RPVCFRYPRGA---IVRTDLP-------------G---- 570 (722)
Q Consensus 519 ~a~~~-----~iP~l~V~~Psd~~E~~~~l~~a~~~~~---~Pv~ir~~r~~---~~~~~~p-------------~---- 570 (722)
+...+ .. ++.|++|+|+||++++...|++.++ .||+++.+... ....++| .
T Consensus 123 ~~~~~~~~hgd~-~~ivl~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~~~~~~~~ 201 (376)
T PRK08659 123 MMQARWGTHGDH-PIIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADEVVGHMREKVVLPEPDEIEIIERKLPKVPPE 201 (376)
T ss_pred HHHHhcccCCCc-CcEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechHhhCCcccccCCChhhccccccccCCCCcc
Confidence 76655 23 3789999999999999999998644 59999865321 0000000 0
Q ss_pred -CCCCC-----c---cccc--------------------------------------------cEEE-EEeCCcEEEEEe
Q 004946 571 -YRGIP-----I---EEIG--------------------------------------------KGKV-LVEGKDVALLGY 596 (722)
Q Consensus 571 -~~~~~-----~---~~ig--------------------------------------------k~~v-l~eG~dv~lva~ 596 (722)
...+. + ...+ ..+. -.++.|++||++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~ad~~iv~~ 281 (376)
T PRK08659 202 AYKPFDDPEGGVPPMPAFGDGYRFHVTGLTHDERGFPTTDPETHEKLVRRLVRKIEKNRDDIVLYEEYMLEDAEVVVVAY 281 (376)
T ss_pred ccCCCCCCCCCCCCCccCCCCCeEEeCCccccCCCCcCcCHHHHHHHHHHHHHHHHHHHhhcCCceeecCCCCCEEEEEe
Confidence 00000 0 0001 0111 113689999999
Q ss_pred chhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcCCCeEEEEcCCCCCChHHHHHHHH
Q 004946 597 GAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFI 662 (722)
Q Consensus 597 Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~~~vvvvEe~~~gG~gs~v~~~l 662 (722)
|++...+++|++.|+++|++++++++++++|||.+.|++++++++.|+|||++ .|.+..++...+
T Consensus 282 Gs~~~~a~eAv~~Lr~~G~~v~~l~~~~l~Pfp~~~i~~~~~~~k~VivvEe~-~g~l~~el~~~~ 346 (376)
T PRK08659 282 GSVARSARRAVKEAREEGIKVGLFRLITVWPFPEEAIRELAKKVKAIVVPEMN-LGQMSLEVERVV 346 (376)
T ss_pred CccHHHHHHHHHHHHhcCCceEEEEeCeecCCCHHHHHHHHhcCCEEEEEeCC-HHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999 466666655444
No 56
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=99.84 E-value=3.5e-20 Score=190.39 Aligned_cols=228 Identities=17% Similarity=0.197 Sum_probs=162.9
Q ss_pred chhccCCCHHHHHHHHH---HHHHHHHH-----hHhcCCCCCCCcchHHHHHHHHhhccCCCCcEEEecCCchHHHHHHH
Q 004946 88 PLRLKSLTIKELKQLAV---EIRSELSS-----IVSKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKIL 159 (722)
Q Consensus 88 p~~~~~l~~~~l~~la~---eiR~~ii~-----~~~~~gGh~~~slg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~l 159 (722)
|.---.++.+|+.++.+ .+|+.-+. ...+.-|++|.+.||-.+.+.|-..+ ++.|-||. .++||++.++
T Consensus 50 p~~s~~~t~ee~L~~Y~~M~~~RrmE~aad~lYK~k~IRGFCHLy~GQEAvavGme~ai-t~~D~iIt--sYR~Hg~~~~ 126 (394)
T KOG0225|consen 50 PSTSVELTKEEALKYYRDMQTIRRMELAADQLYKAKKIRGFCHLYDGQEAVAVGMEAAI-TKSDSIIT--SYRCHGWTYL 126 (394)
T ss_pred CCceEEecHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhceeeeecccHHHHHHHHHHhc-cCCCceEE--EeeeeeEEee
Confidence 33334455566555533 35654332 22245799999999966666554444 47899998 7888888888
Q ss_pred hCc--hhhhhHHHhhCCCCCCCCC-CCCCC----CCcC-cCCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchH
Q 004946 160 TGR--RSLIHTLRKKDGISGYTSR-SESEY----DPFN-AGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQA 231 (722)
Q Consensus 160 tGr--~~~~~~~r~~ggl~g~~~~-~es~~----d~~~-~G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~ 231 (722)
+|- ++-|.. -+|...|+.+. ..|+| +++| .|.+|.++|.+.|+|+|.++++++..++++.|||+.++|+.
T Consensus 127 ~G~S~~~v~aE--L~Gr~~Gc~kGKGGSMHmy~k~FyGGnGIVGAQiPLGaGia~A~kY~~~~~v~~alYGDGAaNQGQ~ 204 (394)
T KOG0225|consen 127 RGVSVREVLAE--LMGRQAGCSKGKGGSMHMYAKNFYGGNGIVGAQIPLGAGIAFAQKYNREDAVCFALYGDGAANQGQV 204 (394)
T ss_pred cCccHHHHHHH--HhccccccccCCCcceeeecccccCccceeccCCCccccHHHHHHhccCCceEEEEeccccccchhH
Confidence 886 333332 34556676664 45766 4565 69999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHH
Q 004946 232 YEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDE 311 (722)
Q Consensus 232 ~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~ 311 (722)
|||+|.|+.|++|+||||+||+| .+.|.. .|...++.|
T Consensus 205 fEa~NMA~LW~LP~IFvCENN~y-GMGTs~--------------~Rasa~tey--------------------------- 242 (394)
T KOG0225|consen 205 FEAFNMAALWKLPVIFVCENNHY-GMGTSA--------------ERASASTEY--------------------------- 242 (394)
T ss_pred HHHhhHHHHhCCCEEEEEccCCC-ccCcch--------------hhhhcChHH---------------------------
Confidence 99999999999999999999998 233311 111111111
Q ss_pred HhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhc--CCCCCEEEEEEeeccCCCccc
Q 004946 312 YARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASL--GSMGPVLVHVVTEENRRAEDT 375 (722)
Q Consensus 312 ~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~--~~~~P~lI~v~T~kG~G~~~a 375 (722)
|.++- + ++.+ .|||.|+-.+.++.+.|++. .++||+++|+.|.+-.|.+-+
T Consensus 243 ykRG~-----------y-iPGl-~VdGmdvlaVr~a~KfA~~~~~~g~GPilmE~~TYRy~GHSmS 295 (394)
T KOG0225|consen 243 YKRGD-----------Y-IPGL-KVDGMDVLAVREATKFAKKYALEGKGPILMEMDTYRYHGHSMS 295 (394)
T ss_pred HhccC-----------C-CCce-EECCcchhhHHHHHHHHHHHHhcCCCCEEEEEeeeeecccccC
Confidence 11111 1 2334 68999999999999888763 357999999999988887654
No 57
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=99.83 E-value=2.2e-18 Score=191.12 Aligned_cols=281 Identities=17% Similarity=0.148 Sum_probs=197.3
Q ss_pred cCCCEEEEecCCCCccchHHHHHhCC-----CceeecccchHHHHHHHHHHhcCCCeeEEEecHhhHHHHHHHHHHHHhc
Q 004946 417 KDKDIVVVHAGMEMDLSLQLFQEKFP-----ERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQ 491 (722)
Q Consensus 417 ~d~~iv~i~ad~~~~~~l~~f~~~~p-----~R~~d~GIaE~~av~~AaGlA~~G~~p~~~t~~~Fl~ra~dqi~~~~a~ 491 (722)
...+++..=|=.+.+.=++.+.+..| ..|+.+ =+|.+++++|.|+|.+|.|.+++|.+..+..+.|.+ ..++.
T Consensus 26 Ag~~~~a~YPITPsTeI~e~la~~~~~g~~~~~~vq~-E~E~~A~~~~~GAs~aGaRa~TaTS~~Gl~lm~E~l-~~aa~ 103 (407)
T PRK09622 26 AQIDVVAAYPITPSTPIVQNYGSFKANGYVDGEFVMV-ESEHAAMSACVGAAAAGGRVATATSSQGLALMVEVL-YQASG 103 (407)
T ss_pred hCCCEEEEECCCCccHHHHHHHHHhhCCCcCcEEEee-ccHHHHHHHHHHHHhhCcCEEeecCcchHHHHhhHH-HHHHH
Confidence 45666554443333332344444333 346665 499999999999999999999999999999999887 67889
Q ss_pred CCCCEEEEEeCCCccCCCCCCcCcHHHHHHhcCCCCcEEEeeCCHHHHHHHHHHHhhhC-----CCCEEEEecCCCc---
Q 004946 492 QRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASID-----DRPVCFRYPRGAI--- 563 (722)
Q Consensus 492 ~~lpVv~v~~~~G~~G~dG~TH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~~-----~~Pv~ir~~r~~~--- 563 (722)
.++|+|++...+|+.+ .-+++.+..|+...+ -.++.+++|+|+||++++...|++.+ ..||+++.+....
T Consensus 104 ~~~P~V~~~~~R~~~~-~~~i~~d~~D~~~~r-~~g~ivl~p~s~QEa~d~~~~Af~lAE~~~~~~Pviv~~Dg~~~sh~ 181 (407)
T PRK09622 104 MRLPIVLNLVNRALAA-PLNVNGDHSDMYLSR-DSGWISLCTCNPQEAYDFTLMAFKIAEDQKVRLPVIVNQDGFLCSHT 181 (407)
T ss_pred hhCCEEEEEeccccCC-CcCCCchHHHHHHHh-cCCeEEEeCCCHHHHHHHHHHHHHHHHHhccCCCEEEEechhhhhCc
Confidence 9999888775555423 378999999987766 47899999999999999999999863 4699998764310
Q ss_pred -ccccCCC----------CCCC--------C--c----------c---------------------c----ccc----EE
Q 004946 564 -VRTDLPG----------YRGI--------P--I----------E---------------------E----IGK----GK 583 (722)
Q Consensus 564 -~~~~~p~----------~~~~--------~--~----------~---------------------~----igk----~~ 583 (722)
...++++ .+.. + . + . .++ .+
T Consensus 182 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~k~~g~~y~~~e 261 (407)
T PRK09622 182 AQNVRPLSDEVAYQFVGEYQTKNSMLDFDKPVTYGAQTEEDWHFEHKAQLHHALMSSSSVIEEVFNDFAKLTGRKYNLVE 261 (407)
T ss_pred eeeecCCCHHHHhhccCcccccccccCCCCCccCCCCCCCCeeEEechhcchhhhhhHHHHHHHHHHHHHHhCCCCCcee
Confidence 0011100 0000 0 0 0 0 010 00
Q ss_pred E-EEeCCcEEEEEechhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcCCCeEEEEcCCC-CCChHHHHHHH
Q 004946 584 V-LVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-IGGFGSHVSHF 661 (722)
Q Consensus 584 v-l~eG~dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~~~vvvvEe~~-~gG~gs~v~~~ 661 (722)
. -.+++|++||++|+++..+++|++.|+++|++++|+++++++|||.+.+.+++++++.|+|+|++. .||+|+.+.+.
T Consensus 262 ~~~~edad~~iV~~Gs~~~~a~ea~~~L~~~G~kvgvi~~r~~~Pfp~~~l~~~l~~~k~VvVvE~~~~~Gg~G~l~~ev 341 (407)
T PRK09622 262 TYQLEDAEVAIVALGTTYESAIVAAKEMRKEGIKAGVATIRVLRPFPYERLGQALKNLKALAILDRSSPAGAMGALFNEV 341 (407)
T ss_pred ecCCCCCCEEEEEEChhHHHHHHHHHHHHhCCCCeEEEEeeEhhhCCHHHHHHHHhcCCEEEEEeCCCCCCCccHHHHHH
Confidence 0 013578999999999999999999999999999999999999999999999999999999999997 68998866665
Q ss_pred HHhcCCCCC-CCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHhh
Q 004946 662 IALDGLLDS-GVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLG 712 (722)
Q Consensus 662 l~~~~~~~~-~~~v~~ig~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~ll~ 712 (722)
++.-..... ..++ .++ ..|+..| -.++++.|.+.++++..
T Consensus 342 ~~al~~~~~~~~~~-v~~--~~~g~gG--------~~~t~~~i~~~~~~l~~ 382 (407)
T PRK09622 342 TSAVYQTQGTKHPV-VSN--YIYGLGG--------RDMTIAHLCEIFEELNE 382 (407)
T ss_pred HHHHhccCcCCCce-Eee--eEECCCC--------CCCCHHHHHHHHHHHHh
Confidence 543211100 0121 011 1222222 12688999988887764
No 58
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=99.83 E-value=4e-18 Score=190.10 Aligned_cols=467 Identities=14% Similarity=0.151 Sum_probs=280.2
Q ss_pred CCCCCCcchHHHHHHHHhhccCC-CCc-EEEecCCchHH---HHHHHhCc-----------hhhh----hHHHhhCCCCC
Q 004946 118 EKSLKSSLAAVELTVALHHVFHA-PVD-KILWDVGEQTY---AHKILTGR-----------RSLI----HTLRKKDGISG 177 (722)
Q Consensus 118 gGh~~~slg~vel~~aL~~vf~~-p~D-~iv~d~GH~~y---~h~~ltGr-----------~~~~----~~~r~~ggl~g 177 (722)
-||.|.+.|+.-+.+-+-.+-.. ..+ .+|..-||..- +..+|.|. .+.| ..|+-.||+.+
T Consensus 60 lGHwGt~pg~s~~Y~H~nr~i~~~d~~~~yv~GpGHg~~~~~~~~yLeGtys~~yp~~s~d~~Gm~rL~~qFs~PgGi~S 139 (793)
T COG3957 60 LGHWGTQPGLSFIYAHLNRLISKYDANMAYVMGPGHGGPAIVANTYLEGTYSEMYPDISQDEEGLNRLFKQFSFPGGIGS 139 (793)
T ss_pred cccccCCCCchhhhhhhhHHHHhhCcceEEEecCCCCcceeeeccccCCccccccccccccHHHHHHHHHhccCCCCccc
Confidence 48999999997666655433221 122 24445577651 22234442 1222 33333456666
Q ss_pred CCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccch---HHHHHHHhh-hcCCCEEEEEECCC
Q 004946 178 YTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQ---AYEAMSNAG-YLDSNMIVILNDSR 253 (722)
Q Consensus 178 ~~~~~es~~d~~~~G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~---~~EAln~A~-~~~~plivIv~dN~ 253 (722)
|.++ +.|+.---.|-+|++++.|.|+|+ ..++-.|.|++|||+-.+|. .|-+-.+.. ....+++-|+.-||
T Consensus 140 H~~p-etPGsIhEGGeLGy~l~ha~gAa~----d~Pdli~~~vvGDGeaetgplatsWhs~kf~np~~dGavLPIL~lNG 214 (793)
T COG3957 140 HVAP-ETPGSIHEGGELGYALSHAYGAAF----DNPDLIVACVVGDGEAETGPLATSWHSNKFLNPARDGAVLPILHLNG 214 (793)
T ss_pred ccCC-CCCCccCcCcchhHHHHHHHHhhc----CCCCcEEEEEecccccccCccccccccccccCccccCceeeEEEecc
Confidence 6654 344433335788888888888776 46799999999999554443 233211111 12377999999999
Q ss_pred CC-CCCCccCCCCcchhhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceE
Q 004946 254 HS-LHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYY 332 (722)
Q Consensus 254 ~~-s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ 332 (722)
+. +-||- ++ ++. . ++ ...+|+.+||..
T Consensus 215 ykI~npT~-------la-------r~s--------------------~---------~e---------l~~~f~G~Gy~p 242 (793)
T COG3957 215 YKIENPTV-------LA-------RIS--------------------D---------EE---------LKALFEGYGYEP 242 (793)
T ss_pred eeccCcee-------ee-------ecC--------------------h---------HH---------HHHHHhhCCCce
Confidence 82 22221 11 100 0 00 145899999998
Q ss_pred EeecCCCCHHHH----HH----HHHH-------HHhc-CCCCCE--EEEEEeeccCCCccccc---ccchhhccCCCCC-
Q 004946 333 IGPVDGHNIEDL----IS----VLQE-------VASL-GSMGPV--LVHVVTEENRRAEDTQK---SEAIEKQQEGASD- 390 (722)
Q Consensus 333 ~~~vdGhd~~~l----~~----al~~-------a~~~-~~~~P~--lI~v~T~kG~G~~~ae~---~~~~~~~H~~~~~- 390 (722)
+ -|+|+|+++. .. ++++ +++. ...+|. .|..+|-||++-+..-. .++.-+.|.++.+
T Consensus 243 ~-~veg~d~~d~hq~mAa~ldt~~~~i~~iq~~ar~~~~~~~p~wPmiilrtPkGwt~p~~idG~~~eg~~raHqvPl~~ 321 (793)
T COG3957 243 V-FVEGADPADMHQLMAAVLDTAFEEIQRIQRRARENNEAIRPRWPMIILRTPKGWTGPVEIDGKKLEGSWRAHQVPLKG 321 (793)
T ss_pred e-EecCCChHHhhhhHHHHHHHHHHHHHHHHHHHHhcccccCccccceeeecCCCCcCceeecceeccccchhccCCCCC
Confidence 7 5789888762 22 2222 2220 012332 57889999997543211 1123445666640
Q ss_pred -------------------------CCCCC-------------------------------CC---------C----Ccc
Q 004946 391 -------------------------SNSLP-------------------------------FG---------N----YSR 401 (722)
Q Consensus 391 -------------------------~tg~~-------------------------------~~---------~----~~~ 401 (722)
+.|.. ++ . ...
T Consensus 322 ~~~~p~h~~~l~~wl~sy~p~elfde~gaL~~e~~~~ap~~~~Rm~~~p~angg~l~~eL~lPD~r~~~v~~~~~g~~~~ 401 (793)
T COG3957 322 HNLNPAHLLELEEWLKSYKPEELFDEHGALKPELRELAPKGEERMGANPHANGGLLPRELPLPDLRDYAVEVSEPGAVTA 401 (793)
T ss_pred CCCCchhhHHHHHHHHhcChHhhhcccCCCCHHHHHhccccccccCCCCcccCccccccCCCCChhhcCcccCCCCccch
Confidence 00100 00 0 112
Q ss_pred chHHHHHHHHHHHHhcCCC-EEEEecCCCCccchHHHHH---h--------------CCCceeecccchHHHHHHHHHHh
Q 004946 402 TYDDCFIEALVMEAEKDKD-IVVVHAGMEMDLSLQLFQE---K--------------FPERYFDVGMAEQHAVTFSAGLA 463 (722)
Q Consensus 402 s~~~a~~~~L~~~~~~d~~-iv~i~ad~~~~~~l~~f~~---~--------------~p~R~~d~GIaE~~av~~AaGlA 463 (722)
.-+.++++.+.+.++.|++ +.++++|...|+++....+ + -.+|+++ .++|+.+.|++.|.+
T Consensus 402 ~~t~~lg~~l~dv~k~N~~~fRvf~PDE~aSNrl~~v~~~tkr~~~~~~~~ed~~lsp~GRV~e-~LSEh~c~Gwlegy~ 480 (793)
T COG3957 402 ESTTALGRFLRDVMKLNPDNFRVFGPDETASNRLGGVLKVTKRVWMAVTLPEDDFLSPDGRVME-VLSEHACQGWLEGYL 480 (793)
T ss_pred hhHHHHHHHHHHHHhcCccceEeeCCCcchhhhhHHHHHHhhhhhcccccCcccccCCCceeeh-hhcHHHHHHHHHHHH
Confidence 2367889999999999987 9999999988888754322 1 1369999 599999999999999
Q ss_pred cCCCeeEEEecHhhHH---HHHHHH--HHHHhcC-----CCC-EEEEEeCCCc--cCCCCCCcCcHHHH-HHhcCCCC-c
Q 004946 464 CGGLKPFCIIPSAFLQ---RAYDQV--VNDVDQQ-----RLP-VRFVITSAGL--VGSDGPTQCGAFDI-TFMSCLPN-M 528 (722)
Q Consensus 464 ~~G~~p~~~t~~~Fl~---ra~dqi--~~~~a~~-----~lp-Vv~v~~~~G~--~G~dG~TH~~~~d~-a~~~~iP~-l 528 (722)
+.|.+-++++|-.|+. -++.|. ...++.+ ..| ..++. .++. .+.+|-|||...=+ .++...++ +
T Consensus 481 LtGr~glf~sYEaF~~iv~sm~nQh~kwl~v~~e~~wr~~~~Sln~l~-TS~vw~QdhNGfsHQdPgf~~~~~~k~~d~v 559 (793)
T COG3957 481 LTGRHGLFASYEAFAHIVDSMFNQHAKWLKVTREVEWRRPIPSLNYLL-TSHVWRQDHNGFSHQDPGFIDHVANKKSDIV 559 (793)
T ss_pred hcCCccceeeHHHHHHHHHHHHhhhHHHHHHHHhcccCCCCCccccee-ehhhhhcccCCCccCCchHHHHHHhhccCce
Confidence 9999999999999973 233332 1122221 122 22232 2444 57899999954333 33444555 5
Q ss_pred EEEeeCCHHHHHHHHHHHhhhCCCCEEEEecCCCcccc-cCCCC-CCCCccccccEEEEE--eC-CcEEEEEechhh-HH
Q 004946 529 IVMAPSDEDELVDMVATVASIDDRPVCFRYPRGAIVRT-DLPGY-RGIPIEEIGKGKVLV--EG-KDVALLGYGAMV-QN 602 (722)
Q Consensus 529 ~V~~Psd~~E~~~~l~~a~~~~~~Pv~ir~~r~~~~~~-~~p~~-~~~~~~~igk~~vl~--eG-~dv~lva~Gs~v-~~ 602 (722)
.||-|.|++-+..++.+|+...++-.+|..+|++.+.. .+... ..+.- .++-++... +| .||++.+.|.+. -+
T Consensus 560 RvyfPpDaNtlLav~d~~l~s~n~in~iVa~K~p~pq~~t~~qA~~~~~~-G~~iwewas~d~gepdvV~A~~Gd~~t~e 638 (793)
T COG3957 560 RVYFPPDANTLLAVYDHCLRSRNKINVIVASKQPRPQWLTMEQAEKHCTD-GAGIWEWASGDDGEPDVVMACAGDVPTIE 638 (793)
T ss_pred eEecCCCCcchhhhhhHHhhccCceEEEEecCCCcceeecHHHHHHHhhc-CcEEEEeccCCCCCCCEEEEecCCcchHH
Confidence 78999999999999999998767777777788763321 00000 00000 122222211 12 479999999987 78
Q ss_pred HHHHHHHHHhcC--CcEEEe---ecCccccc-------hHHHHHHHhcCCCeEEE
Q 004946 603 CLKARALLSKLG--IDVTVA---DARFCKPL-------DIKLVRELCQNHTFLIT 645 (722)
Q Consensus 603 aleAa~~L~~~G--i~v~Vi---dl~~lkPl-------d~e~i~~~~~~~~~vvv 645 (722)
+++|+++|++++ ++++|| |+..+.|- +.+.+..+.-+.+.+|.
T Consensus 639 ~laAa~~L~e~~p~l~vRvVnVvdl~rLq~~~~hphg~~d~efd~lFt~d~pvif 693 (793)
T COG3957 639 VLAAAQILREEGPELRVRVVNVVDLMRLQPPHDHPHGLSDAEFDSLFTTDKPVIF 693 (793)
T ss_pred HHHHHHHHHHhCccceEEEEEEecchhccCCccCCCCCCHHHHHhcCCCCcceee
Confidence 999999999998 777765 45555553 33455555545455554
No 59
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=99.83 E-value=4.9e-19 Score=193.67 Aligned_cols=242 Identities=14% Similarity=0.182 Sum_probs=175.6
Q ss_pred hcCCCEEEEecCCCCccchHHHH---HhCCCceeecccchHHHHHHHHHHhcCCCeeEEEecHhhHHHHHHHHHHHHhcC
Q 004946 416 EKDKDIVVVHAGMEMDLSLQLFQ---EKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQ 492 (722)
Q Consensus 416 ~~d~~iv~i~ad~~~~~~l~~f~---~~~p~R~~d~GIaE~~av~~AaGlA~~G~~p~~~t~~~Fl~ra~dqi~~~~a~~ 492 (722)
....++++.=|=.+.+.-+..+. +++...|+.+ =+|.+++++|.|+|++|.|.+++|.+..+.++.+++ ..++..
T Consensus 18 ~ag~~~~a~YPITPsTeI~e~la~~~~~~g~~~vq~-E~E~aA~~~a~GAs~aG~Ra~taTSg~G~~lm~E~~-~~a~~~ 95 (375)
T PRK09627 18 ECGCRFFGGYPITPSSEIAHEMSVLLPKCGGTFIQM-EDEISGISVALGASMSGVKSMTASSGPGISLKAEQI-GLGFIA 95 (375)
T ss_pred HhCCCEEEEeCCCChhHHHHHHHHHHHHcCCEEEEc-CCHHHHHHHHHHHHhhCCCEEeecCCchHHHHhhHH-HHHHhc
Confidence 34556555333333222223333 3444566666 599999999999999999999999999999999876 577889
Q ss_pred CCCEEEEE-eCCCccCCCCCCcCcHHHHHHhc-----CCCCcEEEeeCCHHHHHHHHHHHhhhCC---CCEEEEecCCC-
Q 004946 493 RLPVRFVI-TSAGLVGSDGPTQCGAFDITFMS-----CLPNMIVMAPSDEDELVDMVATVASIDD---RPVCFRYPRGA- 562 (722)
Q Consensus 493 ~lpVv~v~-~~~G~~G~dG~TH~~~~d~a~~~-----~iP~l~V~~Psd~~E~~~~l~~a~~~~~---~Pv~ir~~r~~- 562 (722)
++|++++. .|+|. +..-||.....|+...+ ..| ++|++|+|+||++++...||+.++ .||+++.+...
T Consensus 96 e~P~V~~~~~R~Gp-stG~p~~~~q~D~~~~~~~~hgd~~-~ivl~p~~~qEa~d~t~~Af~lAE~~~~PViv~~D~~ls 173 (375)
T PRK09627 96 EIPLVIVNVMRGGP-STGLPTRVAQGDVNQAKNPTHGDFK-SIALAPGSLEEAYTETVRAFNLAERFMTPVFLLLDETVG 173 (375)
T ss_pred cCCEEEEEeccCCC-cCCCCCccchHHHHHHhcCCCCCcC-cEEEeCCCHHHHHHHHHHHHHHHHHHcCceEEecchHHh
Confidence 99988866 56665 22248888888887776 444 559999999999999999998644 49998865321
Q ss_pred --cccccCCC--------------------CCCCCcc---c---------------------------------------
Q 004946 563 --IVRTDLPG--------------------YRGIPIE---E--------------------------------------- 578 (722)
Q Consensus 563 --~~~~~~p~--------------------~~~~~~~---~--------------------------------------- 578 (722)
....++|+ ...+.++ +
T Consensus 174 h~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~k~ 253 (375)
T PRK09627 174 HMYGKAVIPDLEEVQKMIINRKEFDGDKKDYKPYGVAQDEPAVLNPFFKGYRYHVTGLHHGPIGFPTEDAKICGKLIDRL 253 (375)
T ss_pred CCeeeccCCChHhccccccccccccCCcccccCCccCCCCCcccCCCCCCceEEecCccccccCCcCCCHHHHHHHHHHH
Confidence 00000000 0000000 0
Q ss_pred ----------cccEEEE-EeCCcEEEEEechhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcCCCeEEEEc
Q 004946 579 ----------IGKGKVL-VEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVE 647 (722)
Q Consensus 579 ----------igk~~vl-~eG~dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~~~vvvvE 647 (722)
+...... .++.|++||+||+....+.+|++.|+++|++++++.+++++|||.+.+++++++.+.|+|||
T Consensus 254 ~~k~~~~~~~~~~~e~y~~~dAd~~IV~~GSt~~~~keAv~~lr~~G~kvg~l~~~~~~PfP~~~i~~~l~~~k~viVvE 333 (375)
T PRK09627 254 FNKIESHQDEIEEYEEYMLDDAEILIIAYGSVSLSAKEAIKRLREEGIKVGLFRPITLWPSPAKKLKEIGDKFEKILVIE 333 (375)
T ss_pred HHHHHHHhhhcCCceeeCCCCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEeCeEECCCHHHHHHHHhcCCEEEEEc
Confidence 0001111 12578999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHH
Q 004946 648 EGSIGGFGSHVSHFI 662 (722)
Q Consensus 648 e~~~gG~gs~v~~~l 662 (722)
++. |.|..+|...+
T Consensus 334 ~n~-Gql~~~v~~~~ 347 (375)
T PRK09627 334 LNM-GQYLEEIERVM 347 (375)
T ss_pred CCh-HHHHHHHHHHh
Confidence 998 88888877655
No 60
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=99.80 E-value=1.9e-17 Score=181.90 Aligned_cols=236 Identities=17% Similarity=0.184 Sum_probs=173.3
Q ss_pred hcCCCEEEEecCCCCccchHHHHHhCC--C--ceeecccchHHHHHHHHHHhcCCCeeEEEecHhhHHHHHHHHHHHHhc
Q 004946 416 EKDKDIVVVHAGMEMDLSLQLFQEKFP--E--RYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQ 491 (722)
Q Consensus 416 ~~d~~iv~i~ad~~~~~~l~~f~~~~p--~--R~~d~GIaE~~av~~AaGlA~~G~~p~~~t~~~Fl~ra~dqi~~~~a~ 491 (722)
....+++..=|=.+.+.-+..+.+..+ + -.+-..=+|++++++|.|+|++|.|.+++|.+..+.++.|++ ..++.
T Consensus 18 ~ag~~~~a~YPITPsTei~e~la~~~~~G~~~~~~~~~E~E~aA~~~aiGAs~aGaRa~TaTSg~Gl~lm~E~l-~~aa~ 96 (390)
T PRK08366 18 HARVQVVAAYPITPQTSIIEKIAEFIANGEADIQYVPVESEHSAMAACIGASAAGARAFTATSAQGLALMHEML-HWAAG 96 (390)
T ss_pred HhCCCEEEEECCCChhHHHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHhhCCCeEeeeCcccHHHHhhHH-HHHHh
Confidence 345566554343333222344444434 1 222233599999999999999999999999999999999887 67789
Q ss_pred CCCCEEEEE-eCCCccCCCCCCcCcHHHHHHhcCCCCcEEEeeCCHHHHHHHHHHHhhhCC---CCEEEEecCCCc----
Q 004946 492 QRLPVRFVI-TSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDD---RPVCFRYPRGAI---- 563 (722)
Q Consensus 492 ~~lpVv~v~-~~~G~~G~dG~TH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~~~---~Pv~ir~~r~~~---- 563 (722)
.++|+|++. .|+|. + .++||+...|+.+.+. .++.+++|+|+||++++...|++.++ -||+++.+....
T Consensus 97 ~~lPiVi~~~~R~~p-~-~~~~~~~q~D~~~~~d-~g~i~~~~~~~QEa~d~t~~Af~lAE~~~~PViv~~Dg~~~sh~~ 173 (390)
T PRK08366 97 ARLPIVMVDVNRAMA-P-PWSVWDDQTDSLAQRD-TGWMQFYAENNQEVYDGVLMAFKVAETVNLPAMVVESAFILSHTY 173 (390)
T ss_pred cCCCEEEEEeccCCC-C-CCCCcchhhHHHHHhh-cCEEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEecCccccccc
Confidence 999988777 45554 3 4799999999877765 58999999999999999999998644 499998754210
Q ss_pred cccc----------CCC-CC-------CCCc------------c---------------------c----cccEEE-E-E
Q 004946 564 VRTD----------LPG-YR-------GIPI------------E---------------------E----IGKGKV-L-V 586 (722)
Q Consensus 564 ~~~~----------~p~-~~-------~~~~------------~---------------------~----igk~~v-l-~ 586 (722)
...+ ++. .+ +.+. + + +|+.+. . .
T Consensus 174 ~~v~~~~~~~v~~~~~~~~~~~~~~~~~~p~s~~~~~~~~~~~e~~~~~~~~~e~~~~~i~~~~~~~~k~~gr~~~~~~e 253 (390)
T PRK08366 174 DVVEMIPQELVDEFLPPRKPLYSLADFDNPISVGALATPADYYEFRYKIAKAMEEAKKVIKEVGKEFGERFGRDYSQMIE 253 (390)
T ss_pred ccccCCCHHHHhhhcCccccccccCCCCCCcccccCCCCcceeeeeHhhhHHHHhHHHHHHHHHHHHHHHhCccccccce
Confidence 0000 000 00 0000 0 0 111111 1 1
Q ss_pred ----eCCcEEEEEechhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcCCCeEEEEcCCCC-CChH
Q 004946 587 ----EGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSI-GGFG 655 (722)
Q Consensus 587 ----eG~dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~~~vvvvEe~~~-gG~g 655 (722)
++.|++||+||+....+.+|++.|+++|++++++.+++++|||.+.+++++++.+.|+|||++.. |.+|
T Consensus 254 ~y~~edAe~~iV~~Gs~~~~~~eav~~lr~~G~kvg~l~i~~~~PfP~~~i~~~l~~~k~ViVvE~n~~~Gq~g 327 (390)
T PRK08366 254 TYYTDDADFVFMGMGSLMGTVKEAVDLLRKEGYKVGYAKVRWFRPFPKEELYEIAESVKGIAVLDRNFSFGQEG 327 (390)
T ss_pred ecCCCCCCEEEEEeCccHHHHHHHHHHHHhcCCceeeEEEeeecCCCHHHHHHHHhcCCEEEEEeCCCCCCccc
Confidence 35789999999999999999999999999999999999999999999999999999999999974 7654
No 61
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=99.78 E-value=9.2e-17 Score=176.91 Aligned_cols=277 Identities=14% Similarity=0.171 Sum_probs=195.1
Q ss_pred cCCCEEEEecCCCCccchHHHHHhCC-----CceeecccchHHHHHHHHHHhcCCCeeEEEecHhhHHHHHHHHHHHHhc
Q 004946 417 KDKDIVVVHAGMEMDLSLQLFQEKFP-----ERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQ 491 (722)
Q Consensus 417 ~d~~iv~i~ad~~~~~~l~~f~~~~p-----~R~~d~GIaE~~av~~AaGlA~~G~~p~~~t~~~Fl~ra~dqi~~~~a~ 491 (722)
...+++..=|=.+.+.=++.+.+..+ ..|+. .=+|++++++|.|+|.+|.|.+++|.+..+.++.|++ ..++.
T Consensus 20 Ag~~v~a~YPITPsTei~e~la~~~~~g~~~~~~v~-~EsE~aA~~~~~GAs~aGaRa~TaTS~~Gl~lm~E~l-~~aag 97 (394)
T PRK08367 20 AKPKVIAAFPITPSTLVPEKISEFVANGELDAEFIK-VESEHSAISACVGASAAGVRTFTATASQGLALMHEVL-FIAAG 97 (394)
T ss_pred hCCCEEEEECCCCccHHHHHHHHHhhcCCcCeEEEE-eCCHHHHHHHHHHHHhhCCCeEeeeccchHHHHhhHH-HHHHH
Confidence 45666554333332222344444333 23333 3699999999999999999999999999999999876 68899
Q ss_pred CCCCEEEEEeCCCccCCCCCCcCcHHHHHHhcCCCCcEEEeeCCHHHHHHHHHHHhhhCC--C---CEEEEecCCC----
Q 004946 492 QRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDD--R---PVCFRYPRGA---- 562 (722)
Q Consensus 492 ~~lpVv~v~~~~G~~G~dG~TH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~~~--~---Pv~ir~~r~~---- 562 (722)
.++|++++...+++ +...++|+...|+...+. -+|.++.|+|.||++++...|++..+ + ||+++++.-.
T Consensus 98 ~~lP~V~vv~~R~~-~~p~~i~~d~~D~~~~rd-~g~~~~~a~~~QEa~D~~~~Af~lAE~~~~~~Pviv~~Dgf~~sH~ 175 (394)
T PRK08367 98 MRLPIVMAIGNRAL-SAPINIWNDWQDTISQRD-TGWMQFYAENNQEALDLILIAFKVAEDERVLLPAMVGFDAFILTHT 175 (394)
T ss_pred ccCCEEEEECCCCC-CCCCCcCcchHHHHhccc-cCeEEEeCCCHHHHHHHHHHHHHHHHHhCcCCCEEEEechhhhcCc
Confidence 99999998855554 334578988889766665 46889999999999999999998766 4 9999876521
Q ss_pred cccccCC----------CCC--------CCC------------cc-------------------------ccccEE-EEE
Q 004946 563 IVRTDLP----------GYR--------GIP------------IE-------------------------EIGKGK-VLV 586 (722)
Q Consensus 563 ~~~~~~p----------~~~--------~~~------------~~-------------------------~igk~~-vl~ 586 (722)
....++| ..+ ..+ .+ ..|+.+ .+.
T Consensus 176 ~e~v~~~~~~~~~~~~~~~~~~~~~~d~~~p~~~g~~~~p~~~~~~~~~~~~~~~~~~~~i~e~~~e~~~~~grky~~~e 255 (394)
T PRK08367 176 VEPVEIPDQEVVDEFLGEYEPKHAYLDPARPITQGALAFPAHYMEARYTVWEAMENAKKVIDEAFAEFEKKFGRKYQKIE 255 (394)
T ss_pred ccccccCCHHHHhhhcCcccccccccCCCCCcccCCCCCCCceEEEEeecHHHHHHhHHHHHHHHHHHHHHhCCccceeE
Confidence 0001111 000 000 00 022111 111
Q ss_pred ----eCCcEEEEEechhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcCCCeEEEEcCCC----CCChHHHH
Q 004946 587 ----EGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS----IGGFGSHV 658 (722)
Q Consensus 587 ----eG~dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~~~vvvvEe~~----~gG~gs~v 658 (722)
++.|++||++|+....+.+|++.|+++|++|+++.+++++|||.+.+++++++.+.|+|+|.+. .|.+..+|
T Consensus 256 ~yg~eDAe~viV~~GS~~~~~keav~~LR~~G~kVGllri~~~rPFP~~~i~~~l~~~k~ViVvE~n~s~g~~g~l~~dV 335 (394)
T PRK08367 256 EYRTEDAEIIFVTMGSLAGTLKEFVDKLREEGYKVGAAKLTVYRPFPVEEIRALAKKAKVLAFLEKNISFGLGGAVFADA 335 (394)
T ss_pred EeCCCCCCEEEEEeCccHHHHHHHHHHHHhcCCcceeEEEeEecCCCHHHHHHHHccCCEEEEEeCCCCCCCCCcHHHHH
Confidence 3689999999999999999999999999999999999999999999999999999999999986 25667777
Q ss_pred HHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHhh
Q 004946 659 SHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLG 712 (722)
Q Consensus 659 ~~~l~~~~~~~~~~~v~~ig~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~ll~ 712 (722)
...|...+ ...++..+ .++..| --+++++|.+.+.++++
T Consensus 336 ~aal~~~~---~~~~v~~~----~~glgg--------~~~~~~~~~~~~~~~~~ 374 (394)
T PRK08367 336 SAALVNES---EKPKILDF----IIGLGG--------RDVTFKQLDEALEIAEK 374 (394)
T ss_pred HHHHhccC---CCCeEEEE----EeCCCC--------CCCCHHHHHHHHHHHHH
Confidence 77664322 12232221 111122 12788889888877664
No 62
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=99.77 E-value=1.2e-17 Score=192.69 Aligned_cols=218 Identities=19% Similarity=0.216 Sum_probs=169.0
Q ss_pred CceeecccchHHHHHHHHHHhcCCCeeEEEecHhhHHHHHHHHHHHHhcCCCCEEEEE-eCCCccCCCCCCcCcHHHHHH
Q 004946 443 ERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVI-TSAGLVGSDGPTQCGAFDITF 521 (722)
Q Consensus 443 ~R~~d~GIaE~~av~~AaGlA~~G~~p~~~t~~~Fl~ra~dqi~~~~a~~~lpVv~v~-~~~G~~G~dG~TH~~~~d~a~ 521 (722)
+-.+-..-+|.+++++|.|+|++|.|.+++|.+..+..+.|.+ ..++..++|+|++. +|+|. +..-||+....|+.+
T Consensus 237 ~~~~~q~E~E~aA~~~a~GAs~aG~Ra~taTSg~Gl~lm~E~l-~~a~~~~~P~Vi~~~~R~gp-stg~~t~~eq~D~~~ 314 (562)
T TIGR03710 237 GVVVVQAEDEIAAINMAIGASYAGARAMTATSGPGFALMTEAL-GLAGMTETPLVIVDVQRGGP-STGLPTKTEQSDLLF 314 (562)
T ss_pred CcEEEeeccHHHHHHHHHhHHhcCCceeecCCCCChhHhHHHH-hHHHhccCCEEEEEcccCCC-CCCCCCCccHHHHHH
Confidence 4566666999999999999999999999999999999999987 77888999988776 66665 333579999999877
Q ss_pred hcCCC----CcEEEeeCCHHHHHHHHHHHhhhCC---CCEEEEecCCCc---ccccC------C------------CCCC
Q 004946 522 MSCLP----NMIVMAPSDEDELVDMVATVASIDD---RPVCFRYPRGAI---VRTDL------P------------GYRG 573 (722)
Q Consensus 522 ~~~iP----~l~V~~Psd~~E~~~~l~~a~~~~~---~Pv~ir~~r~~~---~~~~~------p------------~~~~ 573 (722)
.+.-. ++.|++|+|+||++++...|++.++ .||+++.+.... ...++ + ....
T Consensus 315 ~~~~~hgd~~~ivl~p~~~qEa~d~~~~Af~lAe~~~~PViv~~D~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (562)
T TIGR03710 315 ALYGGHGEFPRIVLAPGSPEECFYLAIEAFNLAEKYQTPVIVLSDQYLANSYETVPPPDLDDLPIIDRGKVLEPEEEYKR 394 (562)
T ss_pred HhcCCCCCcCceEEcCCCHHHHHHHHHHHHHHHHHhcCCEEEEechHHhCCceeccCCChhhcccccccccccCCCCCCC
Confidence 66421 3899999999999999999998644 499988653210 00000 0 0000
Q ss_pred C--------Cccccc---------------------------------------------cEEE-EEeCCcEEEEEechh
Q 004946 574 I--------PIEEIG---------------------------------------------KGKV-LVEGKDVALLGYGAM 599 (722)
Q Consensus 574 ~--------~~~~ig---------------------------------------------k~~v-l~eG~dv~lva~Gs~ 599 (722)
+ +....+ ..+. -.++.+++||+||++
T Consensus 395 ~~~~~~~~~~~~~pg~~~~~~~~~~~~~~e~g~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~da~~~iv~~Gs~ 474 (562)
T TIGR03710 395 YELTEDGISPRAIPGTPGGIHRATGDEHDETGHISEDPENRVKMMEKRARKLETIAKEIPEPEVYGDEDADVLVIGWGST 474 (562)
T ss_pred CCcCCCCCCCCCcCCCCCceEEecCCccCCCCCcCCCHHHHHHHHHHHHHHHHHHHhhCCCceeecCCCCCEEEEEeCCC
Confidence 0 000000 0111 112578999999999
Q ss_pred hHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcCCCeEEEEcCCCCCChHHHHHHHH
Q 004946 600 VQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFI 662 (722)
Q Consensus 600 v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~~~vvvvEe~~~gG~gs~v~~~l 662 (722)
...+.+|++.|+++|++++++.+++++|||.+.|++++++.+.|+|+|++..|.+..+|...+
T Consensus 475 ~~~~~eav~~lr~~G~kvg~l~~~~~~PfP~~~i~~~l~~~k~v~VvE~n~~Gql~~~v~~~~ 537 (562)
T TIGR03710 475 YGAIREAVERLRAEGIKVALLHLRLLYPFPKDELAELLEGAKKVIVVEQNATGQLAKLLRAET 537 (562)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeCeecCCCHHHHHHHHhcCCEEEEEccChhhhHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999998888888887655
No 63
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=99.72 E-value=9.6e-17 Score=162.27 Aligned_cols=148 Identities=15% Similarity=0.201 Sum_probs=108.2
Q ss_pred HHHhh---CCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchH---HHHHHHhhhc
Q 004946 168 TLRKK---DGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQA---YEAMSNAGYL 241 (722)
Q Consensus 168 ~~r~~---ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~---~EAln~A~~~ 241 (722)
.+||+ |++.+||.+ +.++....+|++|+++|.|+|+|+ ++++.+|+|++|||++++|.. ||+.+++...
T Consensus 36 lf~qfs~~gg~psH~~~-~tpGi~~~~G~LG~gLs~A~G~a~----d~~d~iv~~vvGDGE~eeG~lA~~W~a~~~~~~~ 110 (227)
T cd02011 36 LFKQFSFPGGIPSHAAP-ETPGSIHEGGELGYSLSHAYGAVF----DNPDLIVACVVGDGEAETGPLATSWHSNKFLNPA 110 (227)
T ss_pred HHHhcCCCCCCCCCCcc-cCCCeeecccchhhHHHHHHHhhh----cCCCcEEEEEECcCHHHHHhHHHHHHhhhhhccc
Confidence 44664 456777765 567777789999999999999974 578899999999999999995 9999999888
Q ss_pred C-CCEEEEEECCCCC-CCCCccCCCCcchhhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCC
Q 004946 242 D-SNMIVILNDSRHS-LHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGP 319 (722)
Q Consensus 242 ~-~plivIv~dN~~~-s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~ 319 (722)
+ .+|+.|+++|+++ +.||..+. + +. .
T Consensus 111 ~~~~vLpIld~Ng~~i~~pt~~~~-------~-----------------------------~~----------------e 138 (227)
T cd02011 111 TDGAVLPILHLNGYKISNPTILAR-------I-----------------------------SH----------------E 138 (227)
T ss_pred ccCCeEEEEEcCCCcccCCccccc-------c-----------------------------Cc----------------h
Confidence 7 8999999999983 22221000 0 00 0
Q ss_pred ChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHh--------c--------CCCCCE--EEEEEeeccCCCc
Q 004946 320 QGSTLFEELGLYYIGPVDGHNIEDLISVLQEVAS--------L--------GSMGPV--LVHVVTEENRRAE 373 (722)
Q Consensus 320 ~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~--------~--------~~~~P~--lI~v~T~kG~G~~ 373 (722)
+...+|++|||..+ .|||||++++.++++++.+ . ...+|. +|.++|.|||.-|
T Consensus 139 ~l~~~~~~yG~~~~-~VDG~D~~av~~~~a~a~~~~~~~i~~~~~~~~~~~~~~~~~wp~~~~~~~kg~~~p 209 (227)
T cd02011 139 ELEALFRGYGYEPY-FVEGDDPETMHQAMAATLDWAIEEIKAIQKRAREGGDASRPRWPMIVLRTPKGWTGP 209 (227)
T ss_pred hHHHHHHhCCCceE-EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCEEEEeCCCCCCCC
Confidence 12458999999998 6899999877665543321 1 113453 7889999999754
No 64
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=99.68 E-value=6e-16 Score=160.37 Aligned_cols=132 Identities=12% Similarity=0.127 Sum_probs=104.4
Q ss_pred cCCCcchHHHHHHHHHHHHHcC-----CCCeEEEEecCCCc-ccchHHHHHHHhhhcCCC---EEEEEECCCCCCCCCcc
Q 004946 191 AGHGCNSVSAGLGMAVARDIKG-----KRECIVTVISNGTT-MAGQAYEAMSNAGYLDSN---MIVILNDSRHSLHPKIE 261 (722)
Q Consensus 191 ~G~~G~~ls~A~G~A~A~~l~~-----~~~~Vv~viGDGa~-~~G~~~EAln~A~~~~~p---livIv~dN~~~s~~t~~ 261 (722)
.+|+|..+|.|+|+|+|.++++ ++..+||++|||++ .+|.+||+||+|+.++.| +|+||.||++. +.|
T Consensus 112 pS~l~~~~pva~G~A~A~k~~~~~~~~~~~v~v~~~GDgA~~~qG~~~EalNlA~l~~lp~gg~ifvveNNq~g-~sT-- 188 (265)
T cd02016 112 PSHLEAVNPVVMGKTRAKQDYRGDGERDKVLPILIHGDAAFAGQGVVYETLNLSNLPGYTTGGTIHIVVNNQIG-FTT-- 188 (265)
T ss_pred CcccccccCeehhHHHHHHHhcCCccCCCeEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEE-EEe--
Confidence 4789999999999999999987 47889999999997 599999999999999988 99999999982 111
Q ss_pred CCCCcchhhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCH
Q 004946 262 ESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNI 341 (722)
Q Consensus 262 ~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~ 341 (722)
+.. +.++ ......+++++|++.+ .|||+|+
T Consensus 189 -----~~~-------~~~~-------------------------------------~~~~~~~a~~~gip~~-~VdG~D~ 218 (265)
T cd02016 189 -----DPR-------DSRS-------------------------------------SPYCTDVAKMIGAPIF-HVNGDDP 218 (265)
T ss_pred -----cHH-------Hhcc-------------------------------------cccHHHHHeecCCCEE-EEcCCCH
Confidence 110 0000 0111456788999998 8999999
Q ss_pred HHHHHHHHHHHh--cCCCCCEEEEEEeeccCCCccc
Q 004946 342 EDLISVLQEVAS--LGSMGPVLVHVVTEENRRAEDT 375 (722)
Q Consensus 342 ~~l~~al~~a~~--~~~~~P~lI~v~T~kG~G~~~a 375 (722)
+++.++.+++.+ ...++|++|++.|.+-+|....
T Consensus 219 ~aV~~a~~~A~~~~r~g~gp~lIe~~tYR~~GHse~ 254 (265)
T cd02016 219 EAVVRATRLALEYRQKFKKDVVIDLVCYRRHGHNEL 254 (265)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCc
Confidence 999988876654 2257899999999999887543
No 65
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=99.64 E-value=2.3e-15 Score=146.94 Aligned_cols=163 Identities=22% Similarity=0.252 Sum_probs=110.1
Q ss_pred HHhhccCCCCcEEEecCCchH-HHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHc
Q 004946 133 ALHHVFHAPVDKILWDVGEQT-YAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIK 211 (722)
Q Consensus 133 aL~~vf~~p~D~iv~d~GH~~-y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G~A~A~~l~ 211 (722)
.|...+ .++|.++.|.|+.. +...++.- ....+.....+.|++|+++|+|+|++++.+
T Consensus 5 ~l~~~~-~~~~~i~~d~g~~~~~~~~~~~~------------------~~~~~~~~~~~~g~~G~~~~~a~Gaa~a~~-- 63 (168)
T cd00568 5 ALRAAL-PEDAIVVNDAGNSAYWAYRYLPL------------------RRGRRFLTSTGFGAMGYGLPAAIGAALAAP-- 63 (168)
T ss_pred HHHHHC-CCCCEEEeCCcHHHHHHHHheee------------------CCCCcEEeCCCchhhhhhHHHHHHHHHhCC--
Confidence 344444 36888999999755 33222210 000112223467999999999999999854
Q ss_pred CCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhHHHHHHHHH
Q 004946 212 GKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVA 291 (722)
Q Consensus 212 ~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~ 291 (722)
+++|||++|||+++ +.+|+|++|..+++|+++||.||+..++ .+.. +.. .+ .
T Consensus 64 --~~~vv~~~GDG~~~--~~~~~l~ta~~~~~~~~~iv~nN~~~~~----------~~~~----~~~----~~-----~- 115 (168)
T cd00568 64 --DRPVVCIAGDGGFM--MTGQELATAVRYGLPVIVVVFNNGGYGT----------IRMH----QEA----FY-----G- 115 (168)
T ss_pred --CCcEEEEEcCcHHh--ccHHHHHHHHHcCCCcEEEEEECCccHH----------HHHH----HHH----Hc-----C-
Confidence 89999999999998 5889999999999999999999986210 1100 000 00 0
Q ss_pred hhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEEEEEe
Q 004946 292 KGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVT 366 (722)
Q Consensus 292 ~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T 366 (722)
+. ......-.++...+++++|+++.. + .+++++.++++++.+ .++|++|+++|
T Consensus 116 -------~~----------~~~~~~~~~d~~~~a~~~G~~~~~-v--~~~~~l~~a~~~a~~--~~~p~~i~v~~ 168 (168)
T cd00568 116 -------GR----------VSGTDLSNPDFAALAEAYGAKGVR-V--EDPEDLEAALAEALA--AGGPALIEVKT 168 (168)
T ss_pred -------CC----------cccccCCCCCHHHHHHHCCCeEEE-E--CCHHHHHHHHHHHHh--CCCCEEEEEEC
Confidence 00 000011123457799999999984 4 459999999999986 58999999986
No 66
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=99.62 E-value=1.7e-14 Score=145.11 Aligned_cols=174 Identities=14% Similarity=0.138 Sum_probs=114.0
Q ss_pred HHHHHHhhccCCCCcEEEecCCc-hHHHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHH
Q 004946 129 ELTVALHHVFHAPVDKILWDVGE-QTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVA 207 (722)
Q Consensus 129 el~~aL~~vf~~p~D~iv~d~GH-~~y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G~A~A 207 (722)
.+...|..+++ +++.++.|.|. +.|+..++.-++ |. +.+...+.|++|+++|+|+|+++|
T Consensus 8 ~~~~~l~~~l~-~~~ivv~d~G~~~~~~~~~~~~~~---------------~~---~~~~~~~~g~mG~~lpaaiGa~la 68 (196)
T cd02013 8 QVLRELEKAMP-EDAIVSTDIGNICSVANSYLRFEK---------------PR---SFIAPLSFGNCGYALPAIIGAKAA 68 (196)
T ss_pred HHHHHHHHHCC-CCEEEEECCcHHHHHHHHhcCcCC---------------CC---eEEcCCCCcccccHHHHHHHHHHh
Confidence 34444444443 45667779884 446654333110 00 111112458899999999999988
Q ss_pred HHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhHHHHH
Q 004946 208 RDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQL 287 (722)
Q Consensus 208 ~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~ 287 (722)
. ++++|||++|||+++ |...+|.+|+++++|+++||.||+. +|.... .++. .|.
T Consensus 69 ~----p~r~vv~i~GDG~f~--m~~~eL~Ta~~~~lpvi~vV~NN~~-------------yg~~~~-~q~~----~~~-- 122 (196)
T cd02013 69 A----PDRPVVAIAGDGAWG--MSMMEIMTAVRHKLPVTAVVFRNRQ-------------WGAEKK-NQVD----FYN-- 122 (196)
T ss_pred C----CCCcEEEEEcchHHh--ccHHHHHHHHHhCCCeEEEEEECch-------------hHHHHH-HHHH----HcC--
Confidence 4 589999999999997 8889999999999999999977774 222110 0000 000
Q ss_pred HHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHh-cCCCCCEEEEEEe
Q 004946 288 REVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVAS-LGSMGPVLVHVVT 366 (722)
Q Consensus 288 r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~-~~~~~P~lI~v~T 366 (722)
. ...+ .+.-.+++..++++||+++..+ .+.++|.++|+++.+ ...++|++|+|.+
T Consensus 123 ----~---~~~~--------------~~~~~~d~~~lA~a~G~~~~~v---~~~~el~~al~~a~~~~~~~~p~liev~v 178 (196)
T cd02013 123 ----N---RFVG--------------TELESESFAKIAEACGAKGITV---DKPEDVGPALQKAIAMMAEGKTTVIEIVC 178 (196)
T ss_pred ----C---Cccc--------------ccCCCCCHHHHHHHCCCEEEEE---CCHHHHHHHHHHHHhcCCCCCeEEEEEEe
Confidence 0 0000 0011245678999999999855 679999999999875 1137899999999
Q ss_pred eccCC
Q 004946 367 EENRR 371 (722)
Q Consensus 367 ~kG~G 371 (722)
.+..+
T Consensus 179 ~~~~~ 183 (196)
T cd02013 179 DQELG 183 (196)
T ss_pred CcccC
Confidence 76654
No 67
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=99.62 E-value=1.4e-14 Score=142.71 Aligned_cols=126 Identities=14% Similarity=0.104 Sum_probs=89.7
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchh
Q 004946 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (722)
Q Consensus 190 ~~G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (722)
+.|.+|+++|+|+|+++|. ++++|||++|||+++ +..++|++|+.+++|+++||.||+...+....
T Consensus 46 ~~g~mG~~lp~AiGa~la~----~~~~vv~i~GDG~f~--~~~~el~ta~~~~lpv~ivv~NN~~~~~~~~~-------- 111 (172)
T cd02004 46 TFGTLGVGLGYAIAAALAR----PDKRVVLVEGDGAFG--FSGMELETAVRYNLPIVVVVGNNGGWYQGLDG-------- 111 (172)
T ss_pred CCCcccchHHHHHHHHHhC----CCCeEEEEEcchhhc--CCHHHHHHHHHcCCCEEEEEEECcccccchhh--------
Confidence 4588999999999999884 589999999999997 77899999999999988888776531111000
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHH
Q 004946 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (722)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~ 349 (722)
++.. + .. ....+ ...-.++...++++||+++..+ .+.++|.++|+
T Consensus 112 ------~~~~----~------~~--~~~~~--------------~~~~~~d~~~la~a~G~~~~~v---~~~~el~~al~ 156 (172)
T cd02004 112 ------QQLS----Y------GL--GLPVT--------------TLLPDTRYDLVAEAFGGKGELV---TTPEELKPALK 156 (172)
T ss_pred ------hhhh----c------cC--CCcee--------------ccCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHH
Confidence 0000 0 00 00000 0011235578999999999854 47999999999
Q ss_pred HHHhcCCCCCEEEEEEe
Q 004946 350 EVASLGSMGPVLVHVVT 366 (722)
Q Consensus 350 ~a~~~~~~~P~lI~v~T 366 (722)
++.+ .++|++||+++
T Consensus 157 ~a~~--~~~p~liev~i 171 (172)
T cd02004 157 RALA--SGKPALINVII 171 (172)
T ss_pred HHHH--cCCCEEEEEEc
Confidence 9987 48999999986
No 68
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=99.61 E-value=2.2e-14 Score=145.30 Aligned_cols=179 Identities=16% Similarity=0.208 Sum_probs=113.1
Q ss_pred HHhhccCCCCcEEEecCC-chHHHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHc
Q 004946 133 ALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIK 211 (722)
Q Consensus 133 aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G~A~A~~l~ 211 (722)
+|...+ .+++.++.|.| |+.|...++.-+ + |. ......+.|++|+++|+|+|+++|.
T Consensus 7 ~l~~~l-~~~~ivv~d~G~~~~~~~~~~~~~--------~-------~~---~~~~~~~~gsmG~~lpaAiGa~la~--- 64 (205)
T cd02003 7 ALNEAI-GDDDVVINAAGSLPGDLHKLWRAR--------T-------PG---GYHLEYGYSCMGYEIAAGLGAKLAK--- 64 (205)
T ss_pred HHHHhC-CCCCEEEECCCcchHHHHHhCCcC--------C-------CC---cEEcCCCcchhhhHHHHHHHHHHhC---
Confidence 343344 36788888998 555555332210 0 10 1111125588999999999999884
Q ss_pred CCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhHHHHHHHHH
Q 004946 212 GKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVA 291 (722)
Q Consensus 212 ~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~ 291 (722)
++++|||++|||+|+ |...+|.+|.++++|+++||.||+. +|.+.. +++....+.
T Consensus 65 -p~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~-------------~g~~~~-~q~~~~~~~-------- 119 (205)
T cd02003 65 -PDREVYVLVGDGSYL--MLHSEIVTAVQEGLKIIIVLFDNHG-------------FGCINN-LQESTGSGS-------- 119 (205)
T ss_pred -CCCeEEEEEccchhh--ccHHHHHHHHHcCCCCEEEEEECCc-------------cHHHHH-HHHHhcCcc--------
Confidence 589999999999997 6778999999999999888888875 222210 110000000
Q ss_pred hhhhhhcCccHHHHHHHHH-HHhh-cccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEEEEEeecc
Q 004946 292 KGMTKRIGRGMHEWAAKVD-EYAR-GMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEEN 369 (722)
Q Consensus 292 ~~i~~~~g~~~~~~~~~~~-~~~~-~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kG 369 (722)
.+...... ... .... ....++...++++||+++..+ +++++|.++|+++.+ .++|++|+|.|.+.
T Consensus 120 ------~~~~~~~~--~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v---~~~~el~~al~~a~~--~~gp~lIeV~v~~~ 186 (205)
T cd02003 120 ------FGTEFRDR--DQESGQLDGALLPVDFAANARSLGARVEKV---KTIEELKAALAKAKA--SDRTTVIVIKTDPK 186 (205)
T ss_pred ------ccchhccc--ccccccccCCCCCCCHHHHHHhCCCEEEEE---CCHHHHHHHHHHHHh--CCCCEEEEEEeecc
Confidence 00000000 000 0000 011245688999999999855 789999999999987 58999999999765
Q ss_pred CC
Q 004946 370 RR 371 (722)
Q Consensus 370 ~G 371 (722)
..
T Consensus 187 ~~ 188 (205)
T cd02003 187 SM 188 (205)
T ss_pred cc
Confidence 43
No 69
>KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion]
Probab=99.60 E-value=1.8e-15 Score=154.33 Aligned_cols=222 Identities=18% Similarity=0.226 Sum_probs=142.6
Q ss_pred CCCCchhccCCCHHHHHHHHHH-----HHHHHHHhHhcCC--CCCCCcchH----HHHHHHHhhccCCCCcEEEecCCc-
Q 004946 84 LVENPLRLKSLTIKELKQLAVE-----IRSELSSIVSKTE--KSLKSSLAA----VELTVALHHVFHAPVDKILWDVGE- 151 (722)
Q Consensus 84 ~i~~p~~~~~l~~~~l~~la~e-----iR~~ii~~~~~~g--Gh~~~slg~----vel~~aL~~vf~~p~D~iv~d~GH- 151 (722)
+|-.+.+..+++.+-..++.+. +=..|++-..+.| .++-.++|- +...+|| .|+|.|. |.
T Consensus 73 ~ii~~sqdp~~~ee~~~kmy~~M~~Ln~MD~IlYesQRQGRiSFYmT~~GEEa~higSAAAL-----~p~Dli~---gQY 144 (432)
T KOG1182|consen 73 QIIDKSQDPQLSEEVVLKMYKDMTLLNIMDRILYESQRQGRISFYMTNFGEEAIHIGSAAAL-----EPQDLIY---GQY 144 (432)
T ss_pred cccCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhcceEEEEEeccchhhhhhhhhhhC-----Ccccccc---ccc
Confidence 3444555556665544444333 2344554433332 234455554 3445667 7888765 32
Q ss_pred hHHHHHHHhCch-hhhhHHHhhCCCCCCCCCCC------C-CCCCcC-cCCCcchHHHHHHHHHHHHHcCCC-CeEEEEe
Q 004946 152 QTYAHKILTGRR-SLIHTLRKKDGISGYTSRSE------S-EYDPFN-AGHGCNSVSAGLGMAVARDIKGKR-ECIVTVI 221 (722)
Q Consensus 152 ~~y~h~~ltGr~-~~~~~~r~~ggl~g~~~~~e------s-~~d~~~-~G~~G~~ls~A~G~A~A~~l~~~~-~~Vv~vi 221 (722)
+--+.++++|.. +.|. -.-+|..+.+-+... | +.++|. +..+.++||.|+|.|.|.|+..++ +.+||++
T Consensus 145 REaGVLlwRgftle~f~-~qCyGn~~d~gkGrQMPvHyGs~elnf~tissplatqlpqAvGaaYa~k~~~~nnac~V~yf 223 (432)
T KOG1182|consen 145 REAGVLLWRGFTLEEFM-NQCYGNKSDLGKGRQMPVHYGSKELNFVTISSPLATQLPQAVGAAYALKMRKKNNACAVTYF 223 (432)
T ss_pred ccCceEEEcCccHHHHH-HHhcCCccccccccccccccCccccceEEecchhhhccchhhhhhhhhhhcccCCeEEEEEe
Confidence 222334445542 2222 122443333222211 1 223343 367899999999999999977665 7899999
Q ss_pred cCCCcccchHHHHHHHhhhcCCCEEEEEECCCC-CCCCCccCCCCcchhhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCc
Q 004946 222 SNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRH-SLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGR 300 (722)
Q Consensus 222 GDGa~~~G~~~EAln~A~~~~~plivIv~dN~~-~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~ 300 (722)
|||+.+||.++.++|+|+.+..|+||||-|||+ .|+||.+|-...
T Consensus 224 GdG~aSEGD~HA~~NfAAtle~Pvif~CRNNG~AISTptseQyr~D---------------------------------- 269 (432)
T KOG1182|consen 224 GDGAASEGDAHAAFNFAATLECPVIFFCRNNGWAISTPTSEQYRGD---------------------------------- 269 (432)
T ss_pred cCCcccccchhhhhhHHHHhCCCEEEEEcCCCeeeccccHHHhcCC----------------------------------
Confidence 999999999999999999999999999999999 455554331100
Q ss_pred cHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhc--CCCCCEEEEEEeec
Q 004946 301 GMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASL--GSMGPVLVHVVTEE 368 (722)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~--~~~~P~lI~v~T~k 368 (722)
.+ ...-.++|++.+ .|||+|.-+++.+.++++++ ...+|++||..|.+
T Consensus 270 GI-------------------a~kG~aYGi~sI-RVDGnD~lAvYnA~k~ARe~av~e~rPvliEamtYR 319 (432)
T KOG1182|consen 270 GI-------------------AVKGPAYGIRSI-RVDGNDALAVYNAVKEAREMAVTEQRPVLIEAMTYR 319 (432)
T ss_pred ce-------------------EEeccccceEEE-EecCcchHHHHHHHHHHHHHHHhccCchhhhhhhhh
Confidence 00 112247899999 78999999999999888763 24689999999974
No 70
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=99.60 E-value=1.8e-14 Score=143.79 Aligned_cols=128 Identities=18% Similarity=0.290 Sum_probs=94.7
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchh
Q 004946 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (722)
Q Consensus 190 ~~G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (722)
+.|++|+++|+|+|+++|. ++++|||++|||+++ |..++|.+|+.+++|+++||.||+.. +
T Consensus 48 ~~g~mG~~lp~aiGa~la~----~~~~vv~i~GDG~f~--~~~~eL~ta~~~~lpi~ivV~nN~~~-------------~ 108 (186)
T cd02015 48 GLGTMGFGLPAAIGAKVAR----PDKTVICIDGDGSFQ--MNIQELATAAQYNLPVKIVILNNGSL-------------G 108 (186)
T ss_pred CccchhchHHHHHHHHHhC----CCCeEEEEEcccHHh--ccHHHHHHHHHhCCCeEEEEEECCcc-------------H
Confidence 4588999999999999884 589999999999997 88899999999999999999888852 2
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhh-cc-cCCChhhhHhhcCceEEeecCCCCHHHHHHH
Q 004946 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYAR-GM-IGPQGSTLFEELGLYYIGPVDGHNIEDLISV 347 (722)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~-~~-~~~~~~~lfea~G~~~~~~vdGhd~~~l~~a 347 (722)
.+.. .++... +. ++.. .. -.++...++++||+++..+ .+.++|.++
T Consensus 109 ~~~~-~~~~~~------------------~~----------~~~~~~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~a 156 (186)
T cd02015 109 MVRQ-WQELFY------------------EG----------RYSHTTLDSNPDFVKLAEAYGIKGLRV---EKPEELEAA 156 (186)
T ss_pred HHHH-HHHHHc------------------CC----------ceeeccCCCCCCHHHHHHHCCCceEEe---CCHHHHHHH
Confidence 2110 000000 00 0000 00 1235678999999999854 568999999
Q ss_pred HHHHHhcCCCCCEEEEEEeeccC
Q 004946 348 LQEVASLGSMGPVLVHVVTEENR 370 (722)
Q Consensus 348 l~~a~~~~~~~P~lI~v~T~kG~ 370 (722)
++++.+ .++|++|+|.|.+..
T Consensus 157 l~~a~~--~~~p~liev~~~~~~ 177 (186)
T cd02015 157 LKEALA--SDGPVLLDVLVDPEE 177 (186)
T ss_pred HHHHHh--CCCCEEEEEEeCCCc
Confidence 999987 589999999997544
No 71
>PRK06163 hypothetical protein; Provisional
Probab=99.59 E-value=5.8e-14 Score=141.45 Aligned_cols=162 Identities=14% Similarity=0.191 Sum_probs=112.1
Q ss_pred chHHHHHHHHhhccCCCCcEEEecCC---chHHHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHH
Q 004946 125 LAAVELTVALHHVFHAPVDKILWDVG---EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAG 201 (722)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G---H~~y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A 201 (722)
+..-.++..|...++ ++|.++.|+| |+.|.. + . .| ..+++.|++|+++|+|
T Consensus 13 ~~~~~~i~~l~~~l~-~~~~iv~D~G~~~~~~~~~-----~--------~------~~------~~~~~~GsMG~glpaA 66 (202)
T PRK06163 13 MNRFDLTCRLVAKLK-DEEAVIGGIGNTNFDLWAA-----G--------Q------RP------QNFYMLGSMGLAFPIA 66 (202)
T ss_pred cCHHHHHHHHHHhcC-CCCEEEECCCccHHHHHHh-----h--------c------CC------CCeEeecccccHHHHH
Confidence 344445555544443 5788999999 333433 0 0 01 0113468899999999
Q ss_pred HHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhc-CCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhh
Q 004946 202 LGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYL-DSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQS 280 (722)
Q Consensus 202 ~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~-~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~ 280 (722)
+|+++|. ++++|||++|||+++ |..++|.+|+.+ +.|+++||.||+.. |.... +.
T Consensus 67 iGaalA~----p~r~Vv~i~GDG~f~--m~~~eL~Ta~~~~~lpi~ivV~NN~~y-------------g~~~~-----~~ 122 (202)
T PRK06163 67 LGVALAQ----PKRRVIALEGDGSLL--MQLGALGTIAALAPKNLTIIVMDNGVY-------------QITGG-----QP 122 (202)
T ss_pred HHHHHhC----CCCeEEEEEcchHHH--HHHHHHHHHHHhcCCCeEEEEEcCCch-------------hhcCC-----cc
Confidence 9999984 589999999999996 889999999877 58999999999742 10000 00
Q ss_pred hhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCce-EEeecCCCCHHHHHHHHHHHHhcCCCCC
Q 004946 281 SKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLY-YIGPVDGHNIEDLISVLQEVASLGSMGP 359 (722)
Q Consensus 281 ~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~-~~~~vdGhd~~~l~~al~~a~~~~~~~P 359 (722)
.. ..-.+++..++++||++ .... .+.++|..+|+++.+ .++|
T Consensus 123 -----------------~~---------------~~~~~Df~~lA~a~G~~~~~~v---~~~~el~~al~~a~~--~~~p 165 (202)
T PRK06163 123 -----------------TL---------------TSQTVDVVAIARGAGLENSHWA---ADEAHFEALVDQALS--GPGP 165 (202)
T ss_pred -----------------CC---------------CCCCCCHHHHHHHCCCceEEEe---CCHHHHHHHHHHHHh--CCCC
Confidence 00 00013457789999997 4434 689999999999987 5899
Q ss_pred EEEEEEeeccCCCc
Q 004946 360 VLVHVVTEENRRAE 373 (722)
Q Consensus 360 ~lI~v~T~kG~G~~ 373 (722)
++|+|++......+
T Consensus 166 ~lIeV~i~~~~~~~ 179 (202)
T PRK06163 166 SFIAVRIDDKPGVG 179 (202)
T ss_pred EEEEEEecCCCCCC
Confidence 99999997665433
No 72
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=99.59 E-value=4.5e-14 Score=142.76 Aligned_cols=183 Identities=17% Similarity=0.167 Sum_probs=115.7
Q ss_pred HHHHHHhhccCCCCcEEEecCC-chHHHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHH
Q 004946 129 ELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVA 207 (722)
Q Consensus 129 el~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G~A~A 207 (722)
.+..+|..+++ +++.|+.|.| |+.|+...+.-++. +++ ....+.|++|+++|+|+|+++|
T Consensus 12 ~~~~~l~~~l~-~d~iiv~d~G~~~~~~~~~~~~~~~-----~~~-------------~~~~~~GsmG~~lpaaiGa~la 72 (202)
T cd02006 12 RVYEEMNKAFG-RDVRYVTTIGLSQIAGAQMLHVYKP-----RHW-------------INCGQAGPLGWTVPAALGVAAA 72 (202)
T ss_pred HHHHHHHhhCC-CCeEEEECCcHHHHHHHHhcCcCCC-----CeE-------------EccCCccchhhhhHHHHhHHhh
Confidence 34444544443 5666778999 55566644432111 011 1112458999999999999998
Q ss_pred HHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhHHHHH
Q 004946 208 RDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQL 287 (722)
Q Consensus 208 ~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~ 287 (722)
. ++++|||++|||+|+ |+..+|.+|.++++|+++||.||+. +|.+.. .++......+
T Consensus 73 ~----p~~~vv~i~GDG~f~--m~~~eL~Ta~~~~lpviivV~NN~~-------------yg~~~~-~q~~~~~~~~--- 129 (202)
T cd02006 73 D----PDRQVVALSGDYDFQ--FMIEELAVGAQHRIPYIHVLVNNAY-------------LGLIRQ-AQRAFDMDYQ--- 129 (202)
T ss_pred C----CCCeEEEEEeChHhh--ccHHHHHHHHHhCCCeEEEEEeCch-------------HHHHHH-HHHHhcCccc---
Confidence 4 589999999999996 8999999999999999999999985 332211 0000000000
Q ss_pred HHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhc--CCCCCEEEEEE
Q 004946 288 REVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASL--GSMGPVLVHVV 365 (722)
Q Consensus 288 r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~--~~~~P~lI~v~ 365 (722)
.+.... ...........++...++++||+++..+ .+.++|.++|+++.+. ..++|++|+|+
T Consensus 130 ----------~~~~~~----~~~~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~el~~al~~a~~~~~~~~~p~liev~ 192 (202)
T cd02006 130 ----------VNLAFE----NINSSELGGYGVDHVKVAEGLGCKAIRV---TKPEELAAAFEQAKKLMAEHRVPVVVEAI 192 (202)
T ss_pred ----------cccccc----cccccccCCCCCCHHHHHHHCCCEEEEE---CCHHHHHHHHHHHHHhcccCCCcEEEEEE
Confidence 000000 0000000000246688999999999865 7899999999998741 13789999999
Q ss_pred eeccC
Q 004946 366 TEENR 370 (722)
Q Consensus 366 T~kG~ 370 (722)
+.+..
T Consensus 193 i~~~~ 197 (202)
T cd02006 193 LERVT 197 (202)
T ss_pred ecccc
Confidence 86554
No 73
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=99.58 E-value=2.9e-14 Score=141.07 Aligned_cols=166 Identities=14% Similarity=0.178 Sum_probs=112.8
Q ss_pred HHHHhhccCCCCcEEEecCC-chHHHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHH
Q 004946 131 TVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARD 209 (722)
Q Consensus 131 ~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G~A~A~~ 209 (722)
+.+|..+++ +++.++.|.| |+.|+..++.-++. . +.....+.|.+|+++|+|+|+++|.
T Consensus 5 ~~~l~~~l~-~~~ii~~d~G~~~~~~~~~~~~~~~---------------~---~~~~~~~~g~mG~~lp~aiGa~la~- 64 (177)
T cd02010 5 VHDLRAVMG-DDDIVLLDVGAHKIWMARYYRTYAP---------------N---TCLISNGLATMGVALPGAIGAKLVY- 64 (177)
T ss_pred HHHHHHHCC-CCcEEEecCcHHHHHHHHhCCcCCC---------------C---CEEeCCCChhhhhHHHHHHHHHHhC-
Confidence 334444443 5667778988 55566644442211 0 1111235689999999999999984
Q ss_pred HcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhHHHHHHH
Q 004946 210 IKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLRE 289 (722)
Q Consensus 210 l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~ 289 (722)
++++|||++|||+++ |...+|.+|.++++|+++||.||+. +|.+. ..++. .+
T Consensus 65 ---~~~~vv~i~GDG~f~--m~~~eL~ta~~~~l~vi~vV~NN~~-------------~g~~~-~~~~~----~~----- 116 (177)
T cd02010 65 ---PDRKVVAVSGDGGFM--MNSQELETAVRLKIPLVVLIWNDNG-------------YGLIK-WKQEK----EY----- 116 (177)
T ss_pred ---CCCcEEEEEcchHHH--hHHHHHHHHHHHCCCeEEEEEECCc-------------chHHH-HHHHH----hc-----
Confidence 589999999999996 8889999999999999999888874 22221 00000 00
Q ss_pred HHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEEEEEeec
Q 004946 290 VAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEE 368 (722)
Q Consensus 290 ~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~k 368 (722)
.+ ..+ ..+-.++...++++||+++..+ .+.++|.++++++.+ .++|++|++.+..
T Consensus 117 -~~----~~~--------------~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~al~~a~~--~~~p~liev~~~~ 171 (177)
T cd02010 117 -GR----DSG--------------VDFGNPDFVKYAESFGAKGYRI---ESADDLLPVLERALA--ADGVHVIDCPVDY 171 (177)
T ss_pred -CC----ccc--------------CcCCCCCHHHHHHHCCCEEEEE---CCHHHHHHHHHHHHh--CCCCEEEEEEecc
Confidence 00 000 0011235678999999999855 689999999999987 5899999999853
No 74
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=99.57 E-value=4e-14 Score=141.34 Aligned_cols=122 Identities=18% Similarity=0.313 Sum_probs=94.4
Q ss_pred cCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCC-CEEEEEECCCCCCCCCccCCCCcc
Q 004946 189 FNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDS-NMIVILNDSRHSLHPKIEESPKTS 267 (722)
Q Consensus 189 ~~~G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~-plivIv~dN~~~s~~t~~~~~~~~ 267 (722)
+..|++|+++|+|+|+++|. ++++|||++|||+|+ |..++|.++++++. |+++||.||+...+
T Consensus 45 ~~~g~mG~~lpaAiGaala~----p~~~Vv~i~GDG~f~--m~~~eL~ta~~~~l~~i~ivV~NN~~yg~---------- 108 (188)
T cd03371 45 LTVGSMGHASQIALGIALAR----PDRKVVCIDGDGAAL--MHMGGLATIGGLAPANLIHIVLNNGAHDS---------- 108 (188)
T ss_pred eecCccccHHHHHHHHHHhC----CCCcEEEEeCCcHHH--hhccHHHHHHHcCCCCcEEEEEeCchhhc----------
Confidence 44599999999999999985 488999999999997 78899999999985 78888888885211
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHH
Q 004946 268 INALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISV 347 (722)
Q Consensus 268 ~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~a 347 (722)
++... ..+ ..++...++++||+.+...+ ++.++|.++
T Consensus 109 ~~~~~------------------------~~~-----------------~~~d~~~~A~a~G~~~~~~v--~~~~el~~a 145 (188)
T cd03371 109 VGGQP------------------------TVS-----------------FDVSLPAIAKACGYRAVYEV--PSLEELVAA 145 (188)
T ss_pred cCCcC------------------------CCC-----------------CCCCHHHHHHHcCCceEEec--CCHHHHHHH
Confidence 00000 000 01234678999999874344 489999999
Q ss_pred HHHHHhcCCCCCEEEEEEeeccCC
Q 004946 348 LQEVASLGSMGPVLVHVVTEENRR 371 (722)
Q Consensus 348 l~~a~~~~~~~P~lI~v~T~kG~G 371 (722)
++++.+ .++|++|++.|.++++
T Consensus 146 l~~a~~--~~~p~lIev~~~~~~~ 167 (188)
T cd03371 146 LAKALA--ADGPAFIEVKVRPGSR 167 (188)
T ss_pred HHHHHh--CCCCEEEEEEecCCCC
Confidence 999987 5899999999988876
No 75
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=99.56 E-value=1e-13 Score=137.18 Aligned_cols=170 Identities=21% Similarity=0.184 Sum_probs=107.9
Q ss_pred HHHhhccCCCCcEEEecCC-chHHHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHH
Q 004946 132 VALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDI 210 (722)
Q Consensus 132 ~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G~A~A~~l 210 (722)
.+|...++ +++.++.|.| |+.|+..++.-++ |. +.....+ |.+|+++|+|+|+++|.
T Consensus 8 ~~l~~~l~-~~~~iv~d~g~~~~~~~~~~~~~~---------------~~---~~~~~~~-g~mG~~lp~aiGaala~-- 65 (178)
T cd02002 8 AALAAALP-EDAIIVDEAVTNGLPLRDQLPLTR---------------PG---SYFTLRG-GGLGWGLPAAVGAALAN-- 65 (178)
T ss_pred HHHHhhCC-CCeEEEecCCcccHHHHHhcccCC---------------CC---CeeccCC-ccccchHHHHHHHHhcC--
Confidence 33433443 5667888988 5556654443211 00 1112235 99999999999999985
Q ss_pred cCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhHHHHHHHH
Q 004946 211 KGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREV 290 (722)
Q Consensus 211 ~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~ 290 (722)
++++|||++|||+++ +..++|++|..++.|+++||.||+. .+... ..++.. +..
T Consensus 66 --~~~~vv~i~GDG~f~--~~~~el~ta~~~~~p~~~iV~nN~~-------------~~~~~-~~~~~~----~~~---- 119 (178)
T cd02002 66 --PDRKVVAIIGDGSFM--YTIQALWTAARYGLPVTVVILNNRG-------------YGALR-SFLKRV----GPE---- 119 (178)
T ss_pred --CCCeEEEEEcCchhh--ccHHHHHHHHHhCCCeEEEEEcCcc-------------HHHHH-HHHHHH----cCC----
Confidence 488999999999997 5568999999999999999999974 12110 000000 000
Q ss_pred HhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEEEEEe
Q 004946 291 AKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVT 366 (722)
Q Consensus 291 ~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T 366 (722)
...-....+.. ...-.++...+++++|+++.. + .+.+++.++++++.+ .++|++||+++
T Consensus 120 ~~~~~~~~~~~------------~~~~~~d~~~~a~a~G~~~~~-v--~~~~el~~al~~a~~--~~~p~vi~v~v 178 (178)
T cd02002 120 GPGENAPDGLD------------LLDPGIDFAAIAKAFGVEAER-V--ETPEELDEALREALA--EGGPALIEVVV 178 (178)
T ss_pred Ccccccccccc------------cCCCCCCHHHHHHHcCCceEE-e--CCHHHHHHHHHHHHh--CCCCEEEEEEC
Confidence 00000000000 000113457899999999984 4 449999999999987 58999999874
No 76
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.55 E-value=6.8e-14 Score=160.79 Aligned_cols=168 Identities=20% Similarity=0.229 Sum_probs=115.9
Q ss_pred HHHHHhhccCCCCcEEEecCC-chHHHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHH
Q 004946 130 LTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVAR 208 (722)
Q Consensus 130 l~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G~A~A~ 208 (722)
+...|..+++ .+..|+.|+| |+.|+..++.-+ ..|++ ...-+.|.+|+++|+|+|+++|.
T Consensus 364 v~~~l~~~~~-~daiv~~d~G~~~~w~a~~~~~~-----~p~~~-------------~~s~~~GtMG~glPaAIGAkla~ 424 (550)
T COG0028 364 VIKVLRELLP-DDAIVVTDVGQHQMWAARYFDFY-----RPRRF-------------LTSGGLGTMGFGLPAAIGAKLAA 424 (550)
T ss_pred HHHHHHHhCC-CCeEEEeCCcHHHHHHHHhcccC-----CCCcE-------------EcCCCCccccchHHHHHHHHhhC
Confidence 4444444433 2345557999 777766333211 11111 11125689999999999999985
Q ss_pred HHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhHHHHHH
Q 004946 209 DIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLR 288 (722)
Q Consensus 209 ~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r 288 (722)
++++|||++|||+|+ |+.++|.+|.++++|+++||.||+. +|.+. .+++..
T Consensus 425 ----P~r~Vv~i~GDG~F~--m~~qEL~Ta~r~~lpv~ivv~nN~~-------------~g~v~----------~~q~~~ 475 (550)
T COG0028 425 ----PDRKVVAIAGDGGFM--MNGQELETAVRYGLPVKIVVLNNGG-------------YGMVR----------QWQELF 475 (550)
T ss_pred ----CCCcEEEEEcccHHh--ccHHHHHHHHHhCCCEEEEEEECCc-------------cccch----------HHHHHh
Confidence 489999999999997 9999999999999999999999996 23221 111111
Q ss_pred HHHhhhhhhcCccHHHHHHHHHHHhhcccCCC-hhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEEEEEee
Q 004946 289 EVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQ-GSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTE 367 (722)
Q Consensus 289 ~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~ 367 (722)
... .+....+.+. +..++|+||++...+ .+.++|.++|+++.+ .++|++|++.+.
T Consensus 476 ~~~-------------------~~~~~~~~~~~f~klAea~G~~g~~v---~~~~el~~al~~al~--~~~p~lidv~id 531 (550)
T COG0028 476 YGG-------------------RYSGTDLGNPDFVKLAEAYGAKGIRV---ETPEELEEALEEALA--SDGPVLIDVVVD 531 (550)
T ss_pred cCC-------------------CcceeecCCccHHHHHHHcCCeeEEe---CCHHHHHHHHHHHHh--CCCCEEEEEEec
Confidence 000 0000011222 567899999999855 599999999999998 589999999997
Q ss_pred cc
Q 004946 368 EN 369 (722)
Q Consensus 368 kG 369 (722)
+.
T Consensus 532 ~~ 533 (550)
T COG0028 532 PE 533 (550)
T ss_pred Cc
Confidence 66
No 77
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=99.55 E-value=5e-14 Score=139.57 Aligned_cols=127 Identities=18% Similarity=0.199 Sum_probs=94.2
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchH-HHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcch
Q 004946 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQA-YEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSI 268 (722)
Q Consensus 190 ~~G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~-~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~ 268 (722)
+.|.+|+++|+|+|+++|.+ +++||+++|||+++ |. +++|.+|.+++.|+++||.||+...+ +..+.. ..
T Consensus 49 ~~g~mG~gl~~AiGa~la~p----~~~Vv~i~GDG~f~--~~g~~eL~ta~~~~l~i~vvV~nN~~~g~-~~~~~~--~~ 119 (178)
T cd02008 49 TCTCMGASIGVAIGMAKASE----DKKVVAVIGDSTFF--HSGILGLINAVYNKANITVVILDNRTTAM-TGGQPH--PG 119 (178)
T ss_pred ccccCccHHHHHhhHHhhCC----CCCEEEEecChHHh--hccHHHHHHHHHcCCCEEEEEECCcceec-cCCCCC--CC
Confidence 46899999999999999964 88999999999995 55 79999999999999888888875211 111000 00
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHH
Q 004946 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (722)
Q Consensus 269 g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al 348 (722)
+ +. . .....-.++...++++||+++..+.++++++++.++|
T Consensus 120 ~------------~~-----------------~----------~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~~~~al 160 (178)
T cd02008 120 T------------GK-----------------T----------LTEPTTVIDIEALVRAIGVKRVVVVDPYDLKAIREEL 160 (178)
T ss_pred C------------cc-----------------c----------ccCCCCccCHHHHHHHCCCCEEEecCccCHHHHHHHH
Confidence 0 00 0 0000001345779999999999877999999999999
Q ss_pred HHHHhcCCCCCEEEEEEe
Q 004946 349 QEVASLGSMGPVLVHVVT 366 (722)
Q Consensus 349 ~~a~~~~~~~P~lI~v~T 366 (722)
+++++ .++|++|+++.
T Consensus 161 ~~a~~--~~gp~lI~v~~ 176 (178)
T cd02008 161 KEALA--VPGVSVIIAKR 176 (178)
T ss_pred HHHHh--CCCCEEEEEeC
Confidence 99987 58999999975
No 78
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=99.55 E-value=1e-13 Score=137.36 Aligned_cols=167 Identities=16% Similarity=0.198 Sum_probs=109.6
Q ss_pred HHHHHhhccCCCCcEEEecCC-chHHHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHH
Q 004946 130 LTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVAR 208 (722)
Q Consensus 130 l~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G~A~A~ 208 (722)
+..+|...++ +++.++.|.| |+.++...++-++. + +.....+.|.+|+++|+|+|+++|.
T Consensus 7 ~~~~l~~~~~-~~~ii~~d~g~~~~~~~~~~~~~~~-----~-------------~~~~~~~~g~mG~~~~~aiGa~~a~ 67 (178)
T cd02014 7 VAAELNKRAP-DDAIFTIDVGNVTVWAARHLRMNGK-----Q-------------RFILSGLLATMGNGLPGAIAAKLAY 67 (178)
T ss_pred HHHHHHhHCC-CCeEEEEcCcHHHHHHHHhcccCCC-----C-------------cEEcCCCCchhhhHHHHHHHHHHhC
Confidence 3444444332 4566778998 65566544432110 0 1111124588999999999999884
Q ss_pred HHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhHHHHHH
Q 004946 209 DIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLR 288 (722)
Q Consensus 209 ~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r 288 (722)
++++|||++|||+++ +...+|.++..++.|+++||.||+.. +.+. ..++.
T Consensus 68 ----~~~~vv~i~GDG~f~--~~~~el~t~~~~~lp~~~iv~NN~~~-------------~~~~-~~~~~---------- 117 (178)
T cd02014 68 ----PDRQVIALSGDGGFA--MLMGDLITAVKYNLPVIVVVFNNSDL-------------GFIK-WEQEV---------- 117 (178)
T ss_pred ----CCCcEEEEEcchHHH--hhHHHHHHHHHhCCCcEEEEEECCch-------------hHHH-HHHHH----------
Confidence 588999999999997 56778999999999999999888741 2110 00000
Q ss_pred HHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEEEEEeec
Q 004946 289 EVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEE 368 (722)
Q Consensus 289 ~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~k 368 (722)
. . . + .+..+.-.++...++++||+++... .+.+++.++++++.+ .++|++||+.|.+
T Consensus 118 -~--~--~----~---------~~~~~~~~~d~~~la~a~G~~~~~v---~~~~el~~~l~~a~~--~~~p~liev~~~~ 174 (178)
T cd02014 118 -M--G--Q----P---------EFGVDLPNPDFAKIAEAMGIKGIRV---EDPDELEAALDEALA--ADGPVVIDVVTDP 174 (178)
T ss_pred -h--c--C----C---------ceeccCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHHHHHHh--CCCCEEEEEEeCC
Confidence 0 0 0 0 0000001134577999999998844 578999999999987 5899999999853
No 79
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=99.54 E-value=1.1e-13 Score=134.35 Aligned_cols=117 Identities=18% Similarity=0.200 Sum_probs=90.7
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcC-CCEEEEEECCCCCCCCCccCCCCcch
Q 004946 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSI 268 (722)
Q Consensus 190 ~~G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~-~plivIv~dN~~~s~~t~~~~~~~~~ 268 (722)
..|++|.++|+|+|+++|. +++|||++|||+++ |..++|.+++.++ .|+++||.||+...+ +
T Consensus 40 ~~gsmG~~lp~AiGa~~a~-----~~~Vv~i~GDG~f~--m~~~el~t~~~~~~~~i~~vV~nN~~~g~----------~ 102 (157)
T cd02001 40 MLGSMGLAGSIGLGLALGL-----SRKVIVVDGDGSLL--MNPGVLLTAGEFTPLNLILVVLDNRAYGS----------T 102 (157)
T ss_pred eecchhhHHHHHHHHHhcC-----CCcEEEEECchHHH--hcccHHHHHHHhcCCCEEEEEEeCccccc----------c
Confidence 3688999999999999984 28899999999996 7788899999885 999999977774210 0
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHH
Q 004946 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (722)
Q Consensus 269 g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al 348 (722)
+.. . .. ...++...+++++|+++..+ +++++|.+++
T Consensus 103 ~~~-------~------------------~~----------------~~~~d~~~lA~a~G~~~~~v---~~~~el~~al 138 (157)
T cd02001 103 GGQ-------P------------------TP----------------SSNVNLEAWAAACGYLVLSA---PLLGGLGSEF 138 (157)
T ss_pred CCc-------C------------------CC----------------CCCCCHHHHHHHCCCceEEc---CCHHHHHHHH
Confidence 100 0 00 00134577899999999855 7899999999
Q ss_pred HHHHhcCCCCCEEEEEEeecc
Q 004946 349 QEVASLGSMGPVLVHVVTEEN 369 (722)
Q Consensus 349 ~~a~~~~~~~P~lI~v~T~kG 369 (722)
+++.+ .++|++|++.+.++
T Consensus 139 ~~a~~--~~gp~vi~v~i~~~ 157 (157)
T cd02001 139 AGLLA--TTGPTLLHAPIAPG 157 (157)
T ss_pred HHHHh--CCCCEEEEEEecCC
Confidence 99987 58999999999654
No 80
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=99.53 E-value=1.7e-13 Score=135.80 Aligned_cols=120 Identities=17% Similarity=0.238 Sum_probs=89.9
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcC-CCEEEEEECCCCCCCCCccCCCCcch
Q 004946 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSI 268 (722)
Q Consensus 190 ~~G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~-~plivIv~dN~~~s~~t~~~~~~~~~ 268 (722)
+.|++|+++|+|+|+|+|.+ ++|||++|||+++ |..+++.++..++ .|+++||.||+...+ .
T Consensus 40 ~~g~mG~~lp~AiGaala~~-----~~vv~i~GDG~f~--m~~~el~ta~~~~~~~l~vvV~NN~~~~~----------~ 102 (179)
T cd03372 40 MLGSMGLASSIGLGLALAQP-----RKVIVIDGDGSLL--MNLGALATIAAEKPKNLIIVVLDNGAYGS----------T 102 (179)
T ss_pred cccchhhHHHHHHHHHhcCC-----CcEEEEECCcHHH--hCHHHHHHHHHcCCCCEEEEEEcCccccc----------c
Confidence 36899999999999999853 7899999999996 6778999999998 578887766654211 0
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHH
Q 004946 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (722)
Q Consensus 269 g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al 348 (722)
+.... ... ..++...++++||+.+. .++| +.+++.+++
T Consensus 103 ~~~~~-------------------------~~~---------------~~~d~~~lA~a~G~~~~-~v~~-~~~el~~al 140 (179)
T cd03372 103 GNQPT-------------------------HAG---------------KKTDLEAVAKACGLDNV-ATVA-SEEAFEKAV 140 (179)
T ss_pred CCCCC-------------------------CCC---------------CCCCHHHHHHHcCCCeE-EecC-CHHHHHHHH
Confidence 00000 000 01334678999999998 5565 899999999
Q ss_pred HHHHhcCCCCCEEEEEEeeccCCC
Q 004946 349 QEVASLGSMGPVLVHVVTEENRRA 372 (722)
Q Consensus 349 ~~a~~~~~~~P~lI~v~T~kG~G~ 372 (722)
++++ ++|++|++.|.++.+.
T Consensus 141 ~~a~----~gp~lIev~~~~~~~~ 160 (179)
T cd03372 141 EQAL----DGPSFIHVKIKPGNTD 160 (179)
T ss_pred HHhc----CCCEEEEEEEcCCCCC
Confidence 9886 5799999999887763
No 81
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=99.52 E-value=5.2e-14 Score=139.02 Aligned_cols=126 Identities=17% Similarity=0.222 Sum_probs=91.5
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchh
Q 004946 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (722)
Q Consensus 190 ~~G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (722)
|.|.+|+++|+|+|+++|. +++|||++|||+++ |...+|.+|.++++|+++||.||+...+
T Consensus 49 g~g~mG~~l~~aiGa~la~-----~~~Vv~i~GDGsf~--m~~~eL~ta~~~~l~v~ivVlNN~~~g~------------ 109 (175)
T cd02009 49 GASGIDGTLSTALGIALAT-----DKPTVLLTGDLSFL--HDLNGLLLGKQEPLNLTIVVINNNGGGI------------ 109 (175)
T ss_pred CccchhhHHHHHHHHHhcC-----CCCEEEEEehHHHH--HhHHHHHhccccCCCeEEEEEECCCCch------------
Confidence 4578999999999999983 78899999999996 8889999999999999999888885211
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHH
Q 004946 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (722)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~ 349 (722)
.. ..+.......+.. ..... ..++...++|+||+++..+ ++.++|.++|+
T Consensus 110 -~~-~~~~~~~~~~~~~------------------------~~~~~-~~~d~~~lA~a~G~~~~~v---~~~~el~~al~ 159 (175)
T cd02009 110 -FS-LLPQASFEDEFER------------------------LFGTP-QGLDFEHLAKAYGLEYRRV---SSLDELEQALE 159 (175)
T ss_pred -he-eccCCcccchhhh------------------------hhcCC-CCCCHHHHHHHcCCCeeeC---CCHHHHHHHHH
Confidence 00 0000000000000 00000 1245678999999999865 68999999999
Q ss_pred HHHhcCCCCCEEEEEEe
Q 004946 350 EVASLGSMGPVLVHVVT 366 (722)
Q Consensus 350 ~a~~~~~~~P~lI~v~T 366 (722)
++.+ .++|.+|++.+
T Consensus 160 ~a~~--~~~p~lIev~v 174 (175)
T cd02009 160 SALA--QDGPHVIEVKT 174 (175)
T ss_pred HHHh--CCCCEEEEEeC
Confidence 9987 58999999986
No 82
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=99.48 E-value=7.3e-13 Score=131.46 Aligned_cols=118 Identities=18% Similarity=0.262 Sum_probs=90.1
Q ss_pred cCCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcC-CCEEEEEECCCCCCCCCccCCCCcchh
Q 004946 191 AGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSIN 269 (722)
Q Consensus 191 ~G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~-~plivIv~dN~~~s~~t~~~~~~~~~g 269 (722)
.|++|+++|+|+|+++|. +++|||++|||+++ |..++|.+|+.++ .|+++||.||+...+ ++
T Consensus 41 ~gsmG~~lpaAiGa~la~-----~~~Vv~i~GDG~f~--m~~~el~ta~~~~~~pv~~vV~NN~~yg~----------~~ 103 (181)
T TIGR03846 41 LGSMGLASSIGLGLALAT-----DRTVIVIDGDGSLL--MNLGVLPTIAAESPKNLILVILDNGAYGS----------TG 103 (181)
T ss_pred ccccccHHHHHHHHHHcC-----CCcEEEEEcchHHH--hhhhHHHHHHHhCCCCeEEEEEeCCcccc----------cc
Confidence 688999999999999983 78899999999996 7779999999999 599999988885211 00
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHH
Q 004946 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (722)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~ 349 (722)
. +. .+ ..-.++...++++||+.+...+ ++.++|.++|+
T Consensus 104 ~--------q~-----------------~~---------------~~~~~d~~~lA~a~G~~~~~~v--~~~~~l~~al~ 141 (181)
T TIGR03846 104 N--------QP-----------------TP---------------ASRRTDLELVAKAAGIRNVEKV--ADEEELRDALK 141 (181)
T ss_pred C--------cC-----------------CC---------------CCCCCCHHHHHHHCCCCeEEEe--CCHHHHHHHHH
Confidence 0 00 00 0001345778999999987522 78999999997
Q ss_pred HHHhcCCCCCEEEEEEeeccC
Q 004946 350 EVASLGSMGPVLVHVVTEENR 370 (722)
Q Consensus 350 ~a~~~~~~~P~lI~v~T~kG~ 370 (722)
+.+ .++|.+|+|.+.++.
T Consensus 142 -a~~--~~~p~li~v~~~~~~ 159 (181)
T TIGR03846 142 -ALA--MKGPTFIHVKVKPGN 159 (181)
T ss_pred -HHc--CCCCEEEEEEeCCCC
Confidence 665 589999999997554
No 83
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=99.48 E-value=5.2e-13 Score=132.87 Aligned_cols=166 Identities=16% Similarity=0.129 Sum_probs=107.0
Q ss_pred HHHHHhhccCCCCcEEEecCCchHHHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHH
Q 004946 130 LTVALHHVFHAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARD 209 (722)
Q Consensus 130 l~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G~A~A~~ 209 (722)
+...|...++ +++.|+.|+|...|....+.-+ + |. +.....+.|.+|+++|+|+|+++|.
T Consensus 7 ~~~~l~~~l~-~~~iiv~d~g~~~~~~~~~~~~--------~-------~~---~~~~~~~~g~mG~~l~~aiGaala~- 66 (183)
T cd02005 7 LWQQVQNFLK-PNDILVAETGTSWFGALDLKLP--------K-------GT---RFISQPLWGSIGYSVPAALGAALAA- 66 (183)
T ss_pred HHHHHHHhcC-CCCEEEECCchHHHhhhhccCC--------C-------CC---EEEeccchhhHhhhHHHHHHHHHhC-
Confidence 3344444443 6788888999644543222100 0 00 1111124589999999999999985
Q ss_pred HcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhHHHHHHH
Q 004946 210 IKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLRE 289 (722)
Q Consensus 210 l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~ 289 (722)
++++|||++|||+++ +...+|.+|++++.|+++||.||+...+ ... ..+.. .
T Consensus 67 ---~~~~vv~i~GDG~f~--~~~~el~ta~~~~~p~~ivV~nN~~~~~-------------~~~-~~~~~--~------- 118 (183)
T cd02005 67 ---PDRRVILLVGDGSFQ--MTVQELSTMIRYGLNPIIFLINNDGYTI-------------ERA-IHGPE--A------- 118 (183)
T ss_pred ---CCCeEEEEECCchhh--ccHHHHHHHHHhCCCCEEEEEECCCcEE-------------EEE-eccCC--c-------
Confidence 478999999999996 6667799999999887777766664211 000 00000 0
Q ss_pred HHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcC----ceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEEEEE
Q 004946 290 VAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELG----LYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVV 365 (722)
Q Consensus 290 ~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G----~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~ 365 (722)
. + .....++...+++++| +++..+ ++.+++.++|+++.+. .++|++||+.
T Consensus 119 -----------~----------~-~~~~~~d~~~ia~a~G~~~~~~~~~v---~~~~el~~al~~a~~~-~~~p~liev~ 172 (183)
T cd02005 119 -----------S----------Y-NDIANWNYTKLPEVFGGGGGGLSFRV---KTEGELDEALKDALFN-RDKLSLIEVI 172 (183)
T ss_pred -----------C----------c-ccCCCCCHHHHHHHhCCCccccEEEe---cCHHHHHHHHHHHHhc-CCCcEEEEEE
Confidence 0 0 0001234577899999 677755 7899999999998762 3789999999
Q ss_pred eecc
Q 004946 366 TEEN 369 (722)
Q Consensus 366 T~kG 369 (722)
|.+.
T Consensus 173 ~~~~ 176 (183)
T cd02005 173 LPKD 176 (183)
T ss_pred cCcc
Confidence 9543
No 84
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=99.47 E-value=4.2e-12 Score=142.18 Aligned_cols=249 Identities=19% Similarity=0.221 Sum_probs=176.3
Q ss_pred CceeecccchHHHHHHHHHHhcCCCeeEEEecHhhHHHHHHHHHHHHhcCCCC---EEEEEeCCCccCCCCCCcCcHHHH
Q 004946 443 ERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQRLP---VRFVITSAGLVGSDGPTQCGAFDI 519 (722)
Q Consensus 443 ~R~~d~GIaE~~av~~AaGlA~~G~~p~~~t~~~Fl~ra~dqi~~~~a~~~lp---Vv~v~~~~G~~G~dG~TH~~~~d~ 519 (722)
+-||+++.+|.-|..+|+|++..|.|.++.+-...+.++.|.+++ +++.... |+++.+..|..+ -|...|-
T Consensus 58 ~vy~e~s~NEkvA~e~a~GA~~~G~ral~~mKhVGlNvAsDpl~s-~ay~Gv~GGlviv~aDDpg~~S-----Sqneqds 131 (640)
T COG4231 58 DVYFEWSLNEKVALETAAGASYAGVRALVTMKHVGLNVASDPLMS-LAYAGVTGGLVIVVADDPGMHS-----SQNEQDS 131 (640)
T ss_pred cEEEEecccHHHHHHHHHHhhhcCceeeEEecccccccchhhhhh-hhhcCccccEEEEEccCCCccc-----ccchhHh
Confidence 689999999999999999999999999999999999999999864 4555443 555556666522 2222333
Q ss_pred HHhcCCCCcEEEeeCCHHHHHHHHHHHhhh---CCCCEEEEecCCCc------ccc----cCCCCCC-CCccccccEEE-
Q 004946 520 TFMSCLPNMIVMAPSDEDELVDMVATVASI---DDRPVCFRYPRGAI------VRT----DLPGYRG-IPIEEIGKGKV- 584 (722)
Q Consensus 520 a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~---~~~Pv~ir~~r~~~------~~~----~~p~~~~-~~~~~igk~~v- 584 (722)
.++...-.+-|+.|+|+||++++++.||+. ...||++|...... ... +...... ....+.++...
T Consensus 132 r~y~~~a~iPvLeP~d~Qea~d~~~~afelSe~~~~pVilr~ttr~~h~~~~V~~~~~~~~~~~~~~~~~~k~~~r~V~~ 211 (640)
T COG4231 132 RAYGKFALIPVLEPSDPQEAYDYVKYAFELSEKSGLPVILRTTTRVSHSRGDVEVGLNRRPIVEPEDEFFIKDPGRYVRV 211 (640)
T ss_pred HHHHHhcCceeecCCChHHHHHHHHHHHHHHHHhCCCEEEEEEeeeeccceeEEeccccCCCCccccccccCCccceeec
Confidence 444444556699999999999999999985 34599998754321 000 0000000 00001111110
Q ss_pred ------------------------------EEeC--CcEEEEEechhhHHHHHHHHHHHhcCCcEEEeecCccccchHHH
Q 004946 585 ------------------------------LVEG--KDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKL 632 (722)
Q Consensus 585 ------------------------------l~eG--~dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~ 632 (722)
+..+ .++-||+.|-....+.+|.+.| |++..++.+.+.+||+.+.
T Consensus 212 p~~~~~~~~~~l~~k~~a~~~~~~~~~~n~v~~~~~~~lGII~~G~ay~yVkeAl~~l---gl~~~~lklg~~~Plp~~~ 288 (640)
T COG4231 212 PANALRHRHRKLLEKWEAAEEFINANPLNRVEGSDDAKLGIIASGIAYNYVKEALEDL---GLDDELLKLGTPYPLPEQL 288 (640)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhhCcccccccCCCCceEEEecCccHHHHHHHHHHc---CCCceeEEecCCcCCCHHH
Confidence 0113 6899999999999999887654 8999999999999999999
Q ss_pred HHHHhcCCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHhh
Q 004946 633 VRELCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLG 712 (722)
Q Consensus 633 i~~~~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~v~~ig~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~ll~ 712 (722)
+++.++.-++|+||||... =+-.+|.+.+.++|. ++...|-.+.+.+ ...-+|++.|...|.+.++
T Consensus 289 i~~F~~g~~~vlVVEE~~P-~iE~qv~~~l~~~g~-----~v~v~GKd~gllP--------~~GElt~~~i~~ai~~~l~ 354 (640)
T COG4231 289 IENFLKGLERVLVVEEGEP-FIEEQVKALLYDAGL-----PVEVHGKDEGLLP--------MEGELTPEKIANAIAKFLG 354 (640)
T ss_pred HHHHHhcCcEEEEEecCCc-hHHHHHHHHHHhcCC-----ceEeecccccccC--------cccccCHHHHHHHHHHHhC
Confidence 9999999999999999974 256777777766553 3334454334333 1234899999999999887
Q ss_pred cc
Q 004946 713 RT 714 (722)
Q Consensus 713 ~~ 714 (722)
..
T Consensus 355 ~~ 356 (640)
T COG4231 355 KE 356 (640)
T ss_pred cc
Confidence 53
No 85
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=99.47 E-value=3.9e-11 Score=139.12 Aligned_cols=426 Identities=17% Similarity=0.144 Sum_probs=256.0
Q ss_pred CCcchHHHHHHHHHHHH-HcCC-----CCeEEEEecCCCc-ccchHHHHHHHhhhcCCC---EEEEEECCCCCCCCCccC
Q 004946 193 HGCNSVSAGLGMAVARD-IKGK-----RECIVTVISNGTT-MAGQAYEAMSNAGYLDSN---MIVILNDSRHSLHPKIEE 262 (722)
Q Consensus 193 ~~G~~ls~A~G~A~A~~-l~~~-----~~~Vv~viGDGa~-~~G~~~EAln~A~~~~~p---livIv~dN~~~s~~t~~~ 262 (722)
|+=.-=|..-|++-|.. +.+. ....|++-||.+| .+|.++|.||.+..++.+ .|+||.||++ ...|.-
T Consensus 620 HLEavdpVleGivRakQd~l~~g~~~~~vlpi~~hGdaafagQGvV~Etlnla~l~~y~tGGtIhvivNNqi-GftT~p- 697 (1228)
T PRK12270 620 HLEAVDPVLEGIVRAKQDRLDKGEEGFTVLPILLHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVVNNQV-GFTTAP- 697 (1228)
T ss_pred hhhhcchHhhhhhhhhhhhhcccccCCceeEEEEeccccccCCchHHHHHHHHhccCCCCCCeEEEEEecCc-ccccCc-
Confidence 44444567778887753 3221 2345778899996 489999999999999977 9999999996 221211
Q ss_pred CCCcchhhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHH
Q 004946 263 SPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIE 342 (722)
Q Consensus 263 ~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~ 342 (722)
..+ .| + .|. ..+++.++...+ .|||.|++
T Consensus 698 ----~~~-Rs--------s-----------------------------~y~--------td~ak~~~~Pif-hVNGdDpe 726 (1228)
T PRK12270 698 ----ESS-RS--------S-----------------------------EYA--------TDVAKMIQAPIF-HVNGDDPE 726 (1228)
T ss_pred ----ccc-cc--------c-----------------------------hhh--------HHHHhhcCCCEE-eECCCCHH
Confidence 000 00 0 000 234566777777 78999999
Q ss_pred HHHHHHHHHHhc--CCCCCEEEEEEeeccCCCccccc-------------------------------------ccchhh
Q 004946 343 DLISVLQEVASL--GSMGPVLVHVVTEENRRAEDTQK-------------------------------------SEAIEK 383 (722)
Q Consensus 343 ~l~~al~~a~~~--~~~~P~lI~v~T~kG~G~~~ae~-------------------------------------~~~~~~ 383 (722)
++.++.+.+.++ .-++|++|++.+++-+|.-.... ++....
T Consensus 727 Av~~va~lA~~yr~~f~~dVvIdlvcYRrrGHNEgDdPSmtqP~mY~~i~~~~svrk~yte~Ligrgdit~ee~e~~l~d 806 (1228)
T PRK12270 727 AVVRVARLAFEYRQRFHKDVVIDLVCYRRRGHNEGDDPSMTQPLMYDLIDAKRSVRKLYTEALIGRGDITVEEAEQALRD 806 (1228)
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEEEEEeecCCCCCCCcccCCchhhhhhhhcchHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 999988877653 24789999999999888721100 000000
Q ss_pred ccCCCC------------CC------CCCCC------------------------C------C---------------Cc
Q 004946 384 QQEGAS------------DS------NSLPF------------------------G------N---------------YS 400 (722)
Q Consensus 384 ~H~~~~------------~~------tg~~~------------------------~------~---------------~~ 400 (722)
||+..- +. +..+. + + ..
T Consensus 807 y~~~Le~~f~e~re~~~~~~~~~~~~~~~~~~~~~~~Tav~~~~l~~i~da~~~~PegFt~Hpkl~~~l~~R~~m~~~g~ 886 (1228)
T PRK12270 807 YQGQLERVFNEVREAEKKPPEPPESVESDQGPPAGVDTAVSAEVLERIGDAHVNLPEGFTVHPKLKPLLEKRREMAREGG 886 (1228)
T ss_pred HHHHHHHHHHHHHhcccCCCCCCCCccccccCCCCCCCCCCHHHHHHHHHHhccCCCCCccChhhHHHHHHHHHHHhcCC
Confidence 110000 00 00000 0 0 00
Q ss_pred cchHHHHHHHH--HHHHhcCCCEEEEecCCCCccc------------------hHHHHHhCCC--ceeecccchHHHHHH
Q 004946 401 RTYDDCFIEAL--VMEAEKDKDIVVVHAGMEMDLS------------------LQLFQEKFPE--RYFDVGMAEQHAVTF 458 (722)
Q Consensus 401 ~s~~~a~~~~L--~~~~~~d~~iv~i~ad~~~~~~------------------l~~f~~~~p~--R~~d~GIaE~~av~~ 458 (722)
..| +|++.| -.++.+...|-+.+.|.-.||= |..|... .. .++|..++|-+++||
T Consensus 887 iDW--a~gEllAfGsLl~eG~~VRL~GQDsrRGTF~QRHavl~D~~tg~e~~Pl~~l~~~-q~~f~vydS~LSEyAa~GF 963 (1228)
T PRK12270 887 IDW--AFGELLAFGSLLLEGTPVRLSGQDSRRGTFSQRHAVLIDRETGEEYTPLQNLSDD-QGKFLVYDSLLSEYAAMGF 963 (1228)
T ss_pred ccH--HHHHHHHHHHHHhcCceeeeeccccCCcceeeeeEEEecCCCCcccCcHhhcCCC-cceEEEecchhhHHHhhcc
Confidence 011 233322 2334445556666666554431 1222111 12 456999999999999
Q ss_pred HHHHhcCCCee--EEEe-cHhhH---HHHHHHHHHHHh---cCCCCEEEEEeCCCccCCCCCCcCcH--HHHHHhcCCCC
Q 004946 459 SAGLACGGLKP--FCII-PSAFL---QRAYDQVVNDVD---QQRLPVRFVITSAGLVGSDGPTQCGA--FDITFMSCLPN 527 (722)
Q Consensus 459 AaGlA~~G~~p--~~~t-~~~Fl---~ra~dqi~~~~a---~~~lpVv~v~~~~G~~G~dG~TH~~~--~d~a~~~~iP~ 527 (722)
=.|.+.+.--. +.+- |.+|. |-.+|+++...- .|+-.|++...+ |.-| .||-|+.. +-..-+..-.|
T Consensus 964 EYGYSv~~pdaLVlWEAQFGDF~NGAQtiIDefIss~e~KWgQ~S~vvlLLPH-GyEG-QGPdHSSaRiERfLqlcAe~n 1041 (1228)
T PRK12270 964 EYGYSVERPDALVLWEAQFGDFANGAQTIIDEFISSGEAKWGQRSGVVLLLPH-GYEG-QGPDHSSARIERFLQLCAEGN 1041 (1228)
T ss_pred ceeeecCCCcceeeehhhhcccccchHHHHHHHHhhhHhhhccccceEEEccC-CcCC-CCCCcchHHHHHHHHhhccCC
Confidence 99999986443 3333 88885 778888765542 256778888877 4444 58999965 33333455689
Q ss_pred cEEEeeCCHHHHHHHHHH-HhhhCCCCEEEEecCCCcccccCCCCCCCCccccccEE-EEEe-----C--CcEEEEEech
Q 004946 528 MIVMAPSDEDELVDMVAT-VASIDDRPVCFRYPRGAIVRTDLPGYRGIPIEEIGKGK-VLVE-----G--KDVALLGYGA 598 (722)
Q Consensus 528 l~V~~Psd~~E~~~~l~~-a~~~~~~Pv~ir~~r~~~~~~~~p~~~~~~~~~igk~~-vl~e-----G--~dv~lva~Gs 598 (722)
|+|..|++|...+.+|++ |+....+|.+++.||..+.... ....-..| .-|+.+ ++.+ + -+-+|+|+|-
T Consensus 1042 m~Va~psTPA~yFHLLRrqa~~~~~rPLvVfTPKSmLR~Ka-A~S~vedF-T~g~F~pVi~D~~~~~~~~V~RVlLcSGK 1119 (1228)
T PRK12270 1042 MTVAQPSTPANYFHLLRRQALSGPRRPLVVFTPKSMLRLKA-AVSDVEDF-TEGKFRPVIDDPTVDDGAKVRRVLLCSGK 1119 (1228)
T ss_pred eEEEccCChHHHHHHHHHHhhcCCCCCeEEEChHHhhcchh-hcCCHHHh-ccCCceecCCCCCCCCccceeEEEEEcch
Confidence 999999999999999985 4445667999999998643110 00001122 223332 2222 1 1446899999
Q ss_pred hhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcCC----CeEEEEcCCC-CCChHHHHHHHHHhcCCCCCCCc
Q 004946 599 MVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNH----TFLITVEEGS-IGGFGSHVSHFIALDGLLDSGVK 673 (722)
Q Consensus 599 ~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~----~~vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~ 673 (722)
.....++..+. ...-++.++.+-.|.|||.+.|++.+.++ +.+.+=||-. .|-|. .++-.|.+. ++...+
T Consensus 1120 vYYdL~a~R~k--~~~~d~AIvRvEQLyP~p~~~l~~~l~~ypna~e~~wvQeEP~NqGaw~-f~~~~l~~~--l~~~~~ 1194 (1228)
T PRK12270 1120 LYYDLAARREK--DGRDDTAIVRVEQLYPLPRAELREALARYPNATEVVWVQEEPANQGAWP-FMALNLPEL--LPDGRR 1194 (1228)
T ss_pred hHHHHHHHHHh--cCCCceEEEEhhhhCCCCHHHHHHHHHhCCCcceeEEeccCcccCCCch-hhhhhhHhh--ccCCCC
Confidence 99876655332 22356999999999999999998887654 3445556544 45553 343333332 222345
Q ss_pred eEEEecCCcc
Q 004946 674 WRPIVLPDNY 683 (722)
Q Consensus 674 v~~ig~~d~f 683 (722)
+++++-|..-
T Consensus 1195 lr~VsRpasa 1204 (1228)
T PRK12270 1195 LRRVSRPASA 1204 (1228)
T ss_pred ceEecCCccc
Confidence 6677655433
No 86
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=99.46 E-value=3.3e-13 Score=130.30 Aligned_cols=129 Identities=17% Similarity=0.208 Sum_probs=93.0
Q ss_pred cCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcch
Q 004946 189 FNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSI 268 (722)
Q Consensus 189 ~~~G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~ 268 (722)
.+.|.+|+++|+|+|+++| .++++|||++|||++. +...+|.+|.+++.|+++||.||+..
T Consensus 25 ~~~g~mG~~~~~aiGa~~a----~p~~~vv~i~GDG~f~--~~~~el~ta~~~~~~v~~vv~nN~~~------------- 85 (153)
T PF02775_consen 25 GGFGSMGYALPAAIGAALA----RPDRPVVAITGDGSFL--MSLQELATAVRYGLPVVIVVLNNGGY------------- 85 (153)
T ss_dssp TTTT-TTTHHHHHHHHHHH----STTSEEEEEEEHHHHH--HHGGGHHHHHHTTSSEEEEEEESSBS-------------
T ss_pred CCccccCCHHHhhhHHHhh----cCcceeEEecCCccee--eccchhHHHhhccceEEEEEEeCCcc-------------
Confidence 3669999999999999998 4599999999999996 77899999999999999999999852
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHH
Q 004946 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (722)
Q Consensus 269 g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al 348 (722)
+.... .+.. .+.. ......+ +.....+...+++++|+++. .++..|.++|.++|
T Consensus 86 ~~~~~-~~~~----~~~~------~~~~~~~--------------~~~~~~d~~~~a~a~G~~~~-~v~~~~~~el~~al 139 (153)
T PF02775_consen 86 GMTGG-QQTP----FGGG------RFSGVDG--------------KTFPNPDFAALAEAFGIKGA-RVTTPDPEELEEAL 139 (153)
T ss_dssp HHHHH-HHHH----TTST------CHHSTBT--------------TTSTTCGHHHHHHHTTSEEE-EESCHSHHHHHHHH
T ss_pred eEecc-cccc----CcCc------ccccccc--------------cccccCCHHHHHHHcCCcEE-EEccCCHHHHHHHH
Confidence 21110 0000 0000 0000000 01123456789999999987 56666779999999
Q ss_pred HHHHhcCCCCCEEEEE
Q 004946 349 QEVASLGSMGPVLVHV 364 (722)
Q Consensus 349 ~~a~~~~~~~P~lI~v 364 (722)
+++.+ .++|++|||
T Consensus 140 ~~a~~--~~gp~vIeV 153 (153)
T PF02775_consen 140 REALE--SGGPAVIEV 153 (153)
T ss_dssp HHHHH--SSSEEEEEE
T ss_pred HHHHh--CCCcEEEEc
Confidence 99997 589999997
No 87
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=99.45 E-value=1.6e-12 Score=150.74 Aligned_cols=172 Identities=11% Similarity=0.203 Sum_probs=115.8
Q ss_pred chHHHHHHHHhhccCCCCcEEEecCC-chHHHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004946 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (722)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G 203 (722)
+....+...|..+++ +++.|+.|.| |+.|...++.-.+ | .+.....+.|++|+++|+|+|
T Consensus 347 i~~~~~~~~l~~~l~-~~~iiv~d~g~~~~~~~~~~~~~~---------------~---~~~~~~~~~g~mG~glpaaiG 407 (549)
T PRK06457 347 MKPQRVAYIVSQKCK-KDAVIVTDTGNVTMWTARHFRASG---------------E---QTFIFSAWLGSMGIGVPGSVG 407 (549)
T ss_pred cCHHHHHHHHHhhCC-CCeEEEECCcHHHHHHHHhCCCCC---------------C---CeEEeCCCcchhhhhHHHHHH
Confidence 334444455544443 4566777988 5556553332110 0 011111245899999999999
Q ss_pred HHHHHHHcCC-CCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhh
Q 004946 204 MAVARDIKGK-RECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSK 282 (722)
Q Consensus 204 ~A~A~~l~~~-~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~ 282 (722)
+++|. + +++|||++|||+|+ |..++|.+|.++++|+++||.||+. .|.+.. .
T Consensus 408 a~la~----p~~~~Vv~i~GDGsf~--~~~~eL~Ta~~~~lpi~ivV~NN~~-------------~g~i~~-~------- 460 (549)
T PRK06457 408 ASFAV----ENKRQVISFVGDGGFT--MTMMELITAKKYDLPVKIIIYNNSK-------------LGMIKF-E------- 460 (549)
T ss_pred HHhcC----CCCCeEEEEEcccHHh--hhHHHHHHHHHHCCCeEEEEEECCc-------------cchHHH-H-------
Confidence 99984 4 78999999999996 8999999999999999999988885 232210 0
Q ss_pred HHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEE
Q 004946 283 SFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLV 362 (722)
Q Consensus 283 ~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI 362 (722)
++.. +. ...+ .++-.+++..++++||+++..+ .+.++|..+++++.+ .++|++|
T Consensus 461 --q~~~----~~-~~~~--------------~~~~~~d~~~lA~a~G~~~~~v---~~~~el~~al~~a~~--~~~p~lI 514 (549)
T PRK06457 461 --QEVM----GY-PEWG--------------VDLYNPDFTKIAESIGFKGFRL---EEPKEAEEIIEEFLN--TKGPAVL 514 (549)
T ss_pred --HHHh----cC-Cccc--------------ccCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHHHHHHh--CCCCEEE
Confidence 0000 00 0000 0111245688999999999866 789999999999987 5899999
Q ss_pred EEEeec
Q 004946 363 HVVTEE 368 (722)
Q Consensus 363 ~v~T~k 368 (722)
+|+|.+
T Consensus 515 eV~i~~ 520 (549)
T PRK06457 515 DAIVDP 520 (549)
T ss_pred EEEeCc
Confidence 999964
No 88
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=99.44 E-value=2.1e-12 Score=149.59 Aligned_cols=174 Identities=15% Similarity=0.169 Sum_probs=118.7
Q ss_pred chHHHHHHHHhhccCCCCcEEEecCC-chHHHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004946 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (722)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G 203 (722)
+....+...|...++ +++.|+.|.| |+.|....+.-. .|. ......+.|++|+++|+|+|
T Consensus 359 i~~~~~~~~l~~~l~-~~~ii~~d~G~~~~~~~~~~~~~---------------~~~---~~~~~~~~g~mG~~lpaaiG 419 (539)
T TIGR02418 359 LHPLEIIKAMQAIVT-DDVTVTVDMGSHYIWMARYFRSY---------------RAR---HLLISNGMQTLGVALPWAIG 419 (539)
T ss_pred cCHHHHHHHHHhhCC-CCCEEEECCcHHHHHHHHhcccC---------------CCC---ceecCCCccccccHHHHHHH
Confidence 334455566655554 5778888998 555655332200 011 11112356899999999999
Q ss_pred HHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhH
Q 004946 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (722)
Q Consensus 204 ~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (722)
+++|. ++++|||++|||+|+ |+.++|.+|..+++|+++||.||+. +|.+.. .....
T Consensus 420 a~la~----~~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpi~ivV~NN~~-------------y~~~~~-----~~~~~ 475 (539)
T TIGR02418 420 AALVR----PNTKVVSVSGDGGFL--FSSMELETAVRLKLNIVHIIWNDNG-------------YNMVEF-----QEEMK 475 (539)
T ss_pred HHHhC----CCCcEEEEEcchhhh--chHHHHHHHHHhCCCeEEEEEECCc-------------chHHHH-----HHHHh
Confidence 99985 588999999999997 8999999999999999999988875 222210 00000
Q ss_pred HHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEEE
Q 004946 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVH 363 (722)
Q Consensus 284 ~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~ 363 (722)
|. ...+ .++-.++...++++||+++..+ ++.++|.++|+++.+ .++|++|+
T Consensus 476 ~~----------~~~~--------------~~~~~~d~~~lA~a~G~~~~~V---~~~~eL~~al~~a~~--~~~p~lIe 526 (539)
T TIGR02418 476 YQ----------RSSG--------------VDFGPIDFVKYAESFGAKGLRV---ESPDQLEPTLRQAME--VEGPVVVD 526 (539)
T ss_pred cC----------Cccc--------------ccCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHHHHHh--CCCCEEEE
Confidence 00 0000 0111245678999999999866 789999999999987 58999999
Q ss_pred EEeeccC
Q 004946 364 VVTEENR 370 (722)
Q Consensus 364 v~T~kG~ 370 (722)
+.+.+..
T Consensus 527 v~v~~~~ 533 (539)
T TIGR02418 527 IPVDYSD 533 (539)
T ss_pred EEecCcc
Confidence 9996443
No 89
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=99.44 E-value=1.3e-11 Score=152.49 Aligned_cols=252 Identities=13% Similarity=0.124 Sum_probs=176.0
Q ss_pred ceeecccchHHHHHHHHHHhcCCCeeEEEecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCccCCCCCCcCcHHHHHHhc
Q 004946 444 RYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMS 523 (722)
Q Consensus 444 R~~d~GIaE~~av~~AaGlA~~G~~p~~~t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~d~a~~~ 523 (722)
.|+.+ =+|.++++++.|++.+|.|.+++|.+..+.++.+.+ ..++..++|+|+.....++.+..+..+.+..|+...|
T Consensus 53 ~~vq~-EsE~~A~~av~GA~~aGara~T~TSs~GL~LM~e~l-~~~ag~~~P~Vi~va~R~~~~~~~~i~~dh~Dv~~~R 130 (1165)
T TIGR02176 53 KVVEM-QSEAGAAGAVHGALQTGALTTTFTASQGLLLMIPNM-YKIAGELLPCVFHVSARAIAAHALSIFGDHQDVMAAR 130 (1165)
T ss_pred eEEEc-cchHHHHHHHHhHhhcCCCEEEecChhHHHHHHHHH-HHHHhccCCEEEEEecCCCCCCCCccCCCchHHHHhh
Confidence 45655 799999999999999999999999999998888766 4566679998887754443333356777888877777
Q ss_pred CCCCcEEEeeCCHHHHHHHHHHHhhh---CCCCEEEEecCCC----cccccCCCC---------------------CCCC
Q 004946 524 CLPNMIVMAPSDEDELVDMVATVASI---DDRPVCFRYPRGA----IVRTDLPGY---------------------RGIP 575 (722)
Q Consensus 524 ~iP~l~V~~Psd~~E~~~~l~~a~~~---~~~Pv~ir~~r~~----~~~~~~p~~---------------------~~~~ 575 (722)
. -|+.+++|+|.||+.++...|+.. ...|+++.++.-. ....+++.. ++.+
T Consensus 131 ~-~G~ivl~s~svQEa~D~al~A~~lAe~~~~Pvi~~~Dgf~tsh~~~~v~~~~~~~v~~~~~~~~~~~~~~~~l~~~~p 209 (1165)
T TIGR02176 131 Q-TGFAMLASSSVQEVMDLALVAHLATIEARVPFMHFFDGFRTSHEIQKIEVLDYEDMASLVNQELVAAFRKRSMNPEHP 209 (1165)
T ss_pred c-CCeEEEeCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCceeccccccccCCCHHHHHhhcChhhcccccccccCCCCC
Confidence 6 589999999999999999998864 4569998776311 000000000 0000
Q ss_pred c------------------------------------c-cccc----EE-EEEeCCcEEEEEechhhHHHHHHHHHHHhc
Q 004946 576 I------------------------------------E-EIGK----GK-VLVEGKDVALLGYGAMVQNCLKARALLSKL 613 (722)
Q Consensus 576 ~------------------------------------~-~igk----~~-vl~eG~dv~lva~Gs~v~~aleAa~~L~~~ 613 (722)
. . -.|+ .+ +-.++++++||++|+....+.+|++.|+++
T Consensus 210 ~~~G~~~~~~~~~~~~e~~~~~~~~~~~~v~~~~~k~~~~~gr~y~~~e~yg~~dAe~ViV~~GS~~~~~~eav~~Lr~~ 289 (1165)
T TIGR02176 210 HVRGTAQNPDIYFQGREAVNPYYLAVPGIVQKYMDKIAKLTGRSYHLFDYYGAPDAERVIIAMGSVAETIEETVDYLNAK 289 (1165)
T ss_pred ceeCCCCCcchhhhhHHHHHHHHhhhHHHHHHHHHHHHHHhCCccCcceecCCCCCCEEEEEeCCCHHHHHHHHHHHHhc
Confidence 0 0 0111 11 112357999999999999999999999999
Q ss_pred CCcEEEeecCccccchHHHHHHHh-cCCCeEEEEcCCC-CC----ChHHHHHHHHHhcCCCCCCCceEEEecCCccccCC
Q 004946 614 GIDVTVADARFCKPLDIKLVRELC-QNHTFLITVEEGS-IG----GFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHA 687 (722)
Q Consensus 614 Gi~v~Vidl~~lkPld~e~i~~~~-~~~~~vvvvEe~~-~g----G~gs~v~~~l~~~~~~~~~~~v~~ig~~d~f~~~g 687 (722)
|++|++|.++.++||+.+.+.+.+ ++.+.|+|+|.+. .| -+..+|...+...+ + ..+.. ++ -.|+..|
T Consensus 290 G~kVGli~vr~~rPFp~e~l~~aLp~svK~I~Vler~~~~g~~g~pL~~DV~~al~~~~--~-~~~~v-~~--~~~Glgg 363 (1165)
T TIGR02176 290 GEKVGLLKVRLYRPFSAETFFAALPKSVKRIAVLDRTKEPGAAGEPLYLDVVSAFYEMG--E-AMPVI-LG--GRYGLGS 363 (1165)
T ss_pred CCceeEEEEeEeCCCCHHHHHHHHHhcCCEEEEEECCCCCCcccChHHHHHHHHHhhcc--C-CCCEE-EE--EEECCCC
Confidence 999999999999999999998866 6889999999985 23 36677776665421 0 11111 11 1222222
Q ss_pred CHHHHHHHcCCCHHHHHHHHHHHhh
Q 004946 688 SPTQQLALAGLTGHHIAATALSLLG 712 (722)
Q Consensus 688 ~~~~l~~~~gl~~~~I~~~i~~ll~ 712 (722)
..++++.|.+.+.++..
T Consensus 364 --------~~~tp~~i~~i~~~l~~ 380 (1165)
T TIGR02176 364 --------KEFTPAMVKAVFDNLSG 380 (1165)
T ss_pred --------CCCCHHHHHHHHHHHhc
Confidence 12678888887777643
No 90
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=99.43 E-value=1.4e-12 Score=152.32 Aligned_cols=186 Identities=15% Similarity=0.150 Sum_probs=118.1
Q ss_pred chHHHHHHHHhhccCCCCcEEEecCC-chHHHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004946 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (722)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G 203 (722)
+....+...|...++ +++.|+.|.| |+.|...++.-.+ .+++ ....+.|++|+++|+|+|
T Consensus 369 l~p~~~~~~l~~~l~-~d~ivv~D~G~~~~~~~~~~~~~~-----p~~~-------------~~~~~~gsmG~glpaaiG 429 (588)
T TIGR01504 369 VKPQRVYEEMNKAFG-RDVCYVTTIGLSQIAGAQMLHVYK-----PRHW-------------INCGQAGPLGWTIPAALG 429 (588)
T ss_pred cCHHHHHHHHHHhCC-CCCEEEECCcHHHHHHHHhccccC-----CCcE-------------EeCCccccccchHhHHHh
Confidence 444455555554443 5677888999 5556654432110 0010 011234889999999999
Q ss_pred HHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhH
Q 004946 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (722)
Q Consensus 204 ~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (722)
+++|. ++++||+++|||+|+ |+.++|.+|.++++|+++||.||+. +|.+..
T Consensus 430 a~lA~----pdr~Vv~i~GDG~f~--m~~~EL~Ta~r~~lpvv~iV~NN~~-------------yg~i~~---------- 480 (588)
T TIGR01504 430 VCAAD----PKRNVVALSGDYDFQ--FMIEELAVGAQHNIPYIHVLVNNAY-------------LGLIRQ---------- 480 (588)
T ss_pred hhhhC----CCCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCCc-------------hHHHHH----------
Confidence 99984 589999999999996 8889999999999999999988885 333211
Q ss_pred HHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhc--CCCCCEE
Q 004946 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASL--GSMGPVL 361 (722)
Q Consensus 284 ~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~--~~~~P~l 361 (722)
+++.....+. .+..... ......+...+++..++|+||.++..+ ++.++|.++|+++.+. ..++|++
T Consensus 481 ~q~~~~~~~~----~~~~~~~----~~~~~~~~~~~d~~~lA~a~G~~~~~V---~~~~eL~~al~~a~~~~~~~~~p~l 549 (588)
T TIGR01504 481 AQRAFDMDYC----VQLAFEN----INSSEVNGYGVDHVKVAEGLGCKAIRV---FKPEEIAPAFEQAKALMAEHRVPVV 549 (588)
T ss_pred HHHHhccccc----ceeeccc----cccccccCCCCCHHHHHHHCCCEEEEE---CCHHHHHHHHHHHHhhcccCCCcEE
Confidence 0000000000 0000000 000000011245678999999999866 7899999999998741 1489999
Q ss_pred EEEEeecc
Q 004946 362 VHVVTEEN 369 (722)
Q Consensus 362 I~v~T~kG 369 (722)
|+|.+.+.
T Consensus 550 IeV~i~~~ 557 (588)
T TIGR01504 550 VEVILERV 557 (588)
T ss_pred EEEEeccc
Confidence 99999544
No 91
>PRK06154 hypothetical protein; Provisional
Probab=99.43 E-value=2.1e-12 Score=150.06 Aligned_cols=175 Identities=15% Similarity=0.123 Sum_probs=116.0
Q ss_pred chHHHHHHHHhhccCCCCcEEEe-cCC-chHHHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHH
Q 004946 125 LAAVELTVALHHVFHAPVDKILW-DVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGL 202 (722)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~-d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~ 202 (722)
+....+...|...++ |+|.|+. |.| |+.|+..++.-.. |. +.....+.|++|+++|+|+
T Consensus 381 l~p~~~~~~l~~~l~-~~d~iv~~D~G~~~~~~~~~~~~~~---------------p~---~~~~~~~~gsmG~glpaai 441 (565)
T PRK06154 381 INPYRVVWELQHAVD-IKTVIITHDAGSPRDQLSPFYVASR---------------PG---SYLGWGKTTQLGYGLGLAM 441 (565)
T ss_pred cCHHHHHHHHHHhcC-CCCEEEEECCcccHHHHHHhCCCCC---------------CC---eEEccCCCcccccHHHHHH
Confidence 444445555544443 4566554 999 6666664433110 10 1111113588999999999
Q ss_pred HHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhh
Q 004946 203 GMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSK 282 (722)
Q Consensus 203 G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~ 282 (722)
|+++|. ++++|||++|||+|+ |+.++|.+|.++++|+++||.||+.. |.+..
T Consensus 442 Ga~la~----p~r~Vv~i~GDG~f~--m~~~EL~Ta~r~~lpi~~vV~NN~~y-------------g~~~~--------- 493 (565)
T PRK06154 442 GAKLAR----PDALVINLWGDAAFG--MTGMDFETAVRERIPILTILLNNFSM-------------GGYDK--------- 493 (565)
T ss_pred HHHHhC----CCCcEEEEEcchHHh--ccHHHHHHHHHhCCCeEEEEEECCcc-------------ceeeh---------
Confidence 999984 589999999999996 89999999999999999999998852 21110
Q ss_pred HHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhc-CCCCCEE
Q 004946 283 SFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASL-GSMGPVL 361 (722)
Q Consensus 283 ~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~-~~~~P~l 361 (722)
+++.+. . ...+ .+ ..+++..++|+||.++..+ .+.++|.++|+++.+. ..++|++
T Consensus 494 -~~~~~~-~----~~~~--------------~~-~~~df~~lA~a~G~~g~~V---~~~~el~~al~~a~~~~~~~~p~l 549 (565)
T PRK06154 494 -VMPVST-T----KYRA--------------TD-ISGDYAAIARALGGYGERV---EDPEMLVPALLRALRKVKEGTPAL 549 (565)
T ss_pred -hhhhhc-C----cccc--------------cC-CCCCHHHHHHHCCCeEEEE---CCHHHHHHHHHHHHhhccCCCeEE
Confidence 000000 0 0000 00 1245678999999999866 6899999999998741 1378999
Q ss_pred EEEEeeccC
Q 004946 362 VHVVTEENR 370 (722)
Q Consensus 362 I~v~T~kG~ 370 (722)
|+|.+.+..
T Consensus 550 Iev~v~~~~ 558 (565)
T PRK06154 550 LEVITSEET 558 (565)
T ss_pred EEEEeChHH
Confidence 999996543
No 92
>PRK05858 hypothetical protein; Provisional
Probab=99.42 E-value=1.5e-12 Score=150.78 Aligned_cols=174 Identities=16% Similarity=0.116 Sum_probs=117.9
Q ss_pred chHHHHHHHHhhccCCCCcEEEecCC-chHHHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004946 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (722)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G 203 (722)
+....+...|...++ +++.|+.|.| |..|+..++.-+. .+++ ....+.|++|+++|+|+|
T Consensus 358 l~~~~~~~~l~~~l~-~~~ivv~d~g~~~~~~~~~~~~~~-----p~~~-------------~~~~~~gsmG~~lp~aiG 418 (542)
T PRK05858 358 IHPMRVYGELAPLLD-RDAIVIGDGGDFVSYAGRYIDPYR-----PGCW-------------LDPGPFGCLGTGPGYALA 418 (542)
T ss_pred cCHHHHHHHHHHhcC-CCeEEEECCcHHHHHHHHHccccC-----CCCE-------------EeCCCccccccchhHHHH
Confidence 444455555655553 4566777887 5556553332110 0111 111235899999999999
Q ss_pred HHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhH
Q 004946 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (722)
Q Consensus 204 ~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (722)
+++|. ++++|||++|||+|+ |+..+|.+|.++++|+++||.||+. +|......
T Consensus 419 a~la~----p~r~vv~i~GDG~f~--~~~~eL~Ta~~~~lpi~ivV~NN~~-------------y~~~~~~~-------- 471 (542)
T PRK05858 419 ARLAR----PSRQVVLLQGDGAFG--FSLMDVDTLVRHNLPVVSVIGNNGI-------------WGLEKHPM-------- 471 (542)
T ss_pred HHHhC----CCCcEEEEEcCchhc--CcHHHHHHHHHcCCCEEEEEEeCCc-------------hhhHHHHH--------
Confidence 99985 589999999999997 8899999999999999999999985 23221000
Q ss_pred HHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcc-cCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEE
Q 004946 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM-IGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLV 362 (722)
Q Consensus 284 ~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI 362 (722)
...+ +... ..++ -.+++..++++||.++..+ .+.++|.++|+++.+ .++|++|
T Consensus 472 -~~~~----------~~~~----------~~~~~~~~d~~~lA~a~G~~~~~v---~~~~eL~~al~~a~~--~~~p~lI 525 (542)
T PRK05858 472 -EALY----------GYDV----------AADLRPGTRYDEVVRALGGHGELV---TVPAELGPALERAFA--SGVPYLV 525 (542)
T ss_pred -HHhc----------CCcc----------ccccCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHHHHHHh--CCCcEEE
Confidence 0000 0000 0011 1246678999999998866 789999999999987 5899999
Q ss_pred EEEeeccC
Q 004946 363 HVVTEENR 370 (722)
Q Consensus 363 ~v~T~kG~ 370 (722)
++.|.+..
T Consensus 526 ev~~~~~~ 533 (542)
T PRK05858 526 NVLTDPSV 533 (542)
T ss_pred EEEECCCc
Confidence 99997553
No 93
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=99.42 E-value=3.4e-12 Score=148.85 Aligned_cols=128 Identities=19% Similarity=0.225 Sum_probs=96.0
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchh
Q 004946 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (722)
Q Consensus 190 ~~G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (722)
+.|++|+++|+|+|+++|. ++++|||++|||+|+ |+.++|.+|.++++|+++||.||+. .|
T Consensus 406 ~~G~mG~~lpaAiGa~la~----p~r~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~-------------~g 466 (574)
T PRK09124 406 NHGSMANAMPQALGAQAAH----PGRQVVALSGDGGFS--MLMGDFLSLVQLKLPVKIVVFNNSV-------------LG 466 (574)
T ss_pred CcccccchHHHHHHHHHhC----CCCeEEEEecCcHHh--ccHHHHHHHHHhCCCeEEEEEeCCc-------------cc
Confidence 4589999999999999984 589999999999996 8899999999999999998888875 22
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHH
Q 004946 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (722)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~ 349 (722)
.+. ..+ ..+ .. . ....++-.+++..++++||+++..+ .+.++|.++|+
T Consensus 467 ~i~-~~~---------~~~----~~-~--------------~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~eL~~al~ 514 (574)
T PRK09124 467 FVA-MEM---------KAG----GY-L--------------TDGTDLHNPDFAAIAEACGITGIRV---EKASELDGALQ 514 (574)
T ss_pred cHH-HHH---------Hhc----CC-c--------------cccCcCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHHH
Confidence 211 000 000 00 0 0000111245678999999999866 78999999999
Q ss_pred HHHhcCCCCCEEEEEEeeccC
Q 004946 350 EVASLGSMGPVLVHVVTEENR 370 (722)
Q Consensus 350 ~a~~~~~~~P~lI~v~T~kG~ 370 (722)
++.+ .++|++|+|.+.+..
T Consensus 515 ~a~~--~~~p~lIev~i~~~~ 533 (574)
T PRK09124 515 RAFA--HDGPALVDVVTAKQE 533 (574)
T ss_pred HHHh--CCCCEEEEEEecCcc
Confidence 9987 589999999996544
No 94
>PRK08322 acetolactate synthase; Reviewed
Probab=99.42 E-value=5.6e-12 Score=146.25 Aligned_cols=175 Identities=11% Similarity=0.140 Sum_probs=117.9
Q ss_pred chHHHHHHHHhhccCCCCcEEEecCC-chHHHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004946 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (722)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G 203 (722)
+....+...|...++ +++.++.|.| |+.|....+.-.+ | .+.+...+.|++|+++|+|+|
T Consensus 357 l~~~~~~~~l~~~l~-~~~ii~~d~G~~~~~~~~~~~~~~---------------~---~~~~~~~~~g~mG~~lpaaiG 417 (547)
T PRK08322 357 MKPQRIVADLRKVMP-DDDIVILDNGAYKIWFARNYRAYE---------------P---NTCLLDNALATMGAGLPSAIA 417 (547)
T ss_pred cCHHHHHHHHHHHCC-CCeEEEECCcHHHHHHHHhcccCC---------------C---CCEEcCCCcccccchhHHHHH
Confidence 344445555555543 5677888999 4445443322110 0 011112356899999999999
Q ss_pred HHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhH
Q 004946 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (722)
Q Consensus 204 ~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (722)
+++|. ++++|||++|||+|+ |+..+|.+|.+++.|+++||.||+. .|.+.. .+
T Consensus 418 a~la~----p~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~iiV~NN~~-------------~g~~~~----~~---- 470 (547)
T PRK08322 418 AKLVH----PDRKVLAVCGDGGFM--MNSQELETAVRLGLPLVVLILNDNA-------------YGMIRW----KQ---- 470 (547)
T ss_pred HHHhC----CCCcEEEEEcchhHh--ccHHHHHHHHHhCCCeEEEEEeCCC-------------cchHHH----HH----
Confidence 99984 589999999999997 8889999999999999999988885 222210 00
Q ss_pred HHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEEE
Q 004946 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVH 363 (722)
Q Consensus 284 ~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~ 363 (722)
+.. ..+ .+.-++-.+++..++++||+++..+ .+.++|.++++++.+ .++|++||
T Consensus 471 --~~~-~~~------------------~~~~~~~~~df~~lA~a~G~~~~~v---~~~~eL~~al~~a~~--~~~p~lIe 524 (547)
T PRK08322 471 --ENM-GFE------------------DFGLDFGNPDFVKYAESYGAKGYRV---ESADDLLPTLEEALA--QPGVHVID 524 (547)
T ss_pred --Hhh-cCC------------------cccccCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHHHHHHh--CCCCEEEE
Confidence 000 000 0000111246688999999999866 789999999999887 58999999
Q ss_pred EEeeccCC
Q 004946 364 VVTEENRR 371 (722)
Q Consensus 364 v~T~kG~G 371 (722)
|.|.....
T Consensus 525 v~v~~~~~ 532 (547)
T PRK08322 525 CPVDYSEN 532 (547)
T ss_pred EEecCccC
Confidence 99965444
No 95
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.42 E-value=3.2e-12 Score=149.33 Aligned_cols=129 Identities=16% Similarity=0.236 Sum_probs=97.2
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchh
Q 004946 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (722)
Q Consensus 190 ~~G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (722)
+.|++|+++|+|+|+++|. ++++|||++|||+|+ |+..+|.+|.++++|+++||.||+. +|
T Consensus 435 ~~gsmG~glpaaiGa~lA~----p~r~Vv~i~GDGsf~--m~~~eL~Ta~r~~lpviivV~NN~~-------------~~ 495 (587)
T PRK06965 435 GLGTMGVGLPYAMGIKMAH----PDDDVVCITGEGSIQ--MCIQELSTCLQYDTPVKIISLNNRY-------------LG 495 (587)
T ss_pred CcccccchHHHHHHHHHhC----CCCcEEEEEcchhhh--cCHHHHHHHHHcCCCeEEEEEECCc-------------ch
Confidence 4589999999999999995 589999999999996 8999999999999999999999985 23
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhccc--CCChhhhHhhcCceEEeecCCCCHHHHHHH
Q 004946 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMI--GPQGSTLFEELGLYYIGPVDGHNIEDLISV 347 (722)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~lfea~G~~~~~~vdGhd~~~l~~a 347 (722)
.+.. +++..... . +....+ .+++..++|+||+++..+ .+.++|.++
T Consensus 496 ~i~~----------~q~~~~~~---------~----------~~~~~~~~~~d~~~iA~a~G~~~~~v---~~~~eL~~a 543 (587)
T PRK06965 496 MVRQ----------WQEIEYSK---------R----------YSHSYMDALPDFVKLAEAYGHVGMRI---EKTSDVEPA 543 (587)
T ss_pred HHHH----------HHHHhcCC---------C----------ccccCCCCCCCHHHHHHHCCCEEEEE---CCHHHHHHH
Confidence 2211 11100000 0 000000 245678999999999866 789999999
Q ss_pred HHHHHhcCCCCCEEEEEEeeccC
Q 004946 348 LQEVASLGSMGPVLVHVVTEENR 370 (722)
Q Consensus 348 l~~a~~~~~~~P~lI~v~T~kG~ 370 (722)
|+++.+. .++|+||+|.+.+..
T Consensus 544 l~~a~~~-~~~p~lieV~i~~~~ 565 (587)
T PRK06965 544 LREALRL-KDRTVFLDFQTDPTE 565 (587)
T ss_pred HHHHHhc-CCCcEEEEEEecccc
Confidence 9998763 378999999997654
No 96
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=99.42 E-value=3.8e-11 Score=131.44 Aligned_cols=234 Identities=15% Similarity=0.208 Sum_probs=163.0
Q ss_pred CCCEEEEecCCCCccchH---HHHHhCCCceeecccchHHHHHHHHHHhcCCCeeEEEecHhhHHHHHHHHHHHHhcCCC
Q 004946 418 DKDIVVVHAGMEMDLSLQ---LFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQRL 494 (722)
Q Consensus 418 d~~iv~i~ad~~~~~~l~---~f~~~~p~R~~d~GIaE~~av~~AaGlA~~G~~p~~~t~~~Fl~ra~dqi~~~~a~~~l 494 (722)
.++++..-+=.+.+.-++ .+..+....|+.+ =+|.++++++.|++.+|.|.+++|.+..+..+.+.+ ..++.+++
T Consensus 20 ~~~~~a~YPITPss~i~e~l~~~~~~~~~~~vq~-EsE~~a~s~v~GA~~aGar~~TaTSg~Gl~Lm~E~l-~~a~~~~~ 97 (365)
T COG0674 20 GCRVIAAYPITPSSEIAEYLASWKAKVGGVFVQM-ESEIGAISAVIGASYAGARAFTATSGQGLLLMAEAL-GLAAGTET 97 (365)
T ss_pred CCcEEEEeCCCCchHHHHHHHHHHhhcCcEEEEe-ccHHHHHHHHHHHHhhCcceEeecCCccHHHHHHHH-HHHHhccC
Confidence 456666555444443233 3333444566666 899999999999999999999999999998888654 78899999
Q ss_pred CEEEEEeCCCccCCCCCCcCcHHHHHHhcCCCCcEEEeeCCHHHHHHHHHHHhhhCCC---CEEEEecCCCc--------
Q 004946 495 PVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDR---PVCFRYPRGAI-------- 563 (722)
Q Consensus 495 pVv~v~~~~G~~G~dG~TH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~~~~---Pv~ir~~r~~~-------- 563 (722)
|++++....++....-||+....|+.+.+.. ++.+++-+|.||+.++...|++..++ |+++.++.-..
T Consensus 98 P~Vi~~~~R~~ps~g~p~~~dq~D~~~~r~~-g~~~~~~~s~qEa~d~t~~Af~iAe~~~~Pvi~~~D~~~~~h~~~~v~ 176 (365)
T COG0674 98 PLVIVVAQRPLPSTGLPIKGDQSDLMAARDT-GFPILVSASVQEAFDLTLLAFNIAEKVLTPVIVLLDGFLASHEYEKIE 176 (365)
T ss_pred CeEEEEeccCcCCCcccccccHHHHHHHHcc-CceEEeeccHHHHHHHHHHHHHHHHHhcCCEEEeeccchhcCceeeee
Confidence 9888875555444444699999999888875 88888888999999999999986554 88876542210
Q ss_pred ------ccccCCCCCCC-------C------------cc---------------------c----ccc----EEEEE-eC
Q 004946 564 ------VRTDLPGYRGI-------P------------IE---------------------E----IGK----GKVLV-EG 588 (722)
Q Consensus 564 ------~~~~~p~~~~~-------~------------~~---------------------~----igk----~~vl~-eG 588 (722)
....++..+.+ + +. + .++ +.+.. ++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~~r~~~k~~~~~~~~~~~~~~~g~~D 256 (365)
T COG0674 177 LLEQDLPDEEIPDYEPYTALDPSPPVLPGTEAVPDAYVTGFEHDNAGYPAEDDVIKRALRKINELTGREYEPFLYYGYED 256 (365)
T ss_pred cCccccccccccccCcccccCCCCCCcCCCCCCCceEEeeeeccccccccchHHHHHHHHHHHHHhcCCCccceeecCCC
Confidence 00000000000 0 00 0 000 01111 46
Q ss_pred CcEEEEEechhhHHHHHHHHH-HHhcCCcEEEeecCccccchHHHHHHHhcCCCe--EEEEcCCCCCChH
Q 004946 589 KDVALLGYGAMVQNCLKARAL-LSKLGIDVTVADARFCKPLDIKLVRELCQNHTF--LITVEEGSIGGFG 655 (722)
Q Consensus 589 ~dv~lva~Gs~v~~aleAa~~-L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~~~--vvvvEe~~~gG~g 655 (722)
.+++||+||+....+.+++.. ++++|++|+++.+|+++||+.+.+++++++.+. |+.+|-+. |+++
T Consensus 257 Ae~viV~~Gss~~~~~~a~~~~~~~~g~kvg~l~vr~~rPFp~~~i~~~l~~~~~~~Vl~~e~~~-g~~~ 325 (365)
T COG0674 257 AEIVIVAMGSSKGSTAEAVVDLLRDKGEKVGLLKVRTLRPFPAEEIREVLPKTNAVVVLDVEISL-GGLA 325 (365)
T ss_pred cCEEEEEeccchHhHHHHHHHHHHhcCceEEEEEEEEeCCCCHHHHHHHhcccceeEEEEEccCC-ccch
Confidence 789999999888777777665 557899999999999999999999999988774 44444443 5544
No 97
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=99.42 E-value=8.6e-12 Score=136.21 Aligned_cols=168 Identities=18% Similarity=0.246 Sum_probs=115.1
Q ss_pred chHHHHHHHHhhccCCCCcEEEecCCchHHHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHH
Q 004946 125 LAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGM 204 (722)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G~ 204 (722)
+.-.+++.++...++ ++|.||.|+|-.+. .+..+|. ..+.++|. +++..|++|+++|+|+|+
T Consensus 172 ~~r~~ai~~i~~~l~-~~~iVV~~~G~~s~----------el~~~~~-~~~~~~~~------~f~~~GsMG~a~p~AlG~ 233 (361)
T TIGR03297 172 MTREEAIAAILDHLP-DNTVIVSTTGKTSR----------ELYELRD-RIGQGHAR------DFLTVGSMGHASQIALGL 233 (361)
T ss_pred CCHHHHHHHHHHhCC-CCCEEEECCCCCcH----------HHHHhhc-ccccCCCC------ceEeechhhhHHHHHHHH
Confidence 455555544444443 67889999995331 1112221 11334332 234569999999999999
Q ss_pred HHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcC-CCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhH
Q 004946 205 AVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (722)
Q Consensus 205 A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~-~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (722)
|+|. ++++|||+.|||++. |..++|.+++.++ .|+++||.||+... . +|....
T Consensus 234 ala~----p~r~Vv~i~GDGsfl--m~~~eL~t~~~~~~~nli~VVlNNg~~~-~---------~g~q~~---------- 287 (361)
T TIGR03297 234 ALAR----PDQRVVCLDGDGAAL--MHMGGLATIGTQGPANLIHVLFNNGAHD-S---------VGGQPT---------- 287 (361)
T ss_pred HHHC----CCCCEEEEEChHHHH--HHHHHHHHHHHhCCCCeEEEEEcCcccc-c---------cCCcCC----------
Confidence 9985 489999999999996 8889999999998 59999999998521 0 111000
Q ss_pred HHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEEE
Q 004946 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVH 363 (722)
Q Consensus 284 ~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~ 363 (722)
.+ ...+...++++|||... +..++.++|.++++++++ .++|++|+
T Consensus 288 --------------~~-----------------~~~d~~~iA~a~G~~~~--~~v~~~~eL~~al~~a~~--~~gp~lIe 332 (361)
T TIGR03297 288 --------------VS-----------------QHLDFAQIAKACGYAKV--YEVSTLEELETALTAASS--ANGPRLIE 332 (361)
T ss_pred --------------CC-----------------CCCCHHHHHHHCCCceE--EEeCCHHHHHHHHHHHHh--CCCcEEEE
Confidence 00 01234678999998432 233899999999999987 48999999
Q ss_pred EEeeccCC
Q 004946 364 VVTEENRR 371 (722)
Q Consensus 364 v~T~kG~G 371 (722)
+++.+|.+
T Consensus 333 V~v~~g~~ 340 (361)
T TIGR03297 333 VKVRPGSR 340 (361)
T ss_pred EEecCCCc
Confidence 99988764
No 98
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=99.41 E-value=2.2e-12 Score=150.39 Aligned_cols=174 Identities=16% Similarity=0.213 Sum_probs=115.9
Q ss_pred chHHHHHHHHhhccCCCCcEEEecCC-chHHHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004946 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (722)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G 203 (722)
+....+...|...++ .++.++.|.| |+.|...+++-+. + .......+.|++|+++|+|+|
T Consensus 359 l~~~~~~~~l~~~l~-~~~ivv~d~G~~~~~~~~~~~~~~---------------~---~~~~~s~~~gsmG~~~paAiG 419 (578)
T PRK06546 359 IHPEYVASILDELAA-DDAVFTVDTGMCNVWAARYITPNG---------------R---RRVIGSFRHGSMANALPHAIG 419 (578)
T ss_pred cCHHHHHHHHHHhcc-CCcEEEECCcHHHHHHHHhcCCCC---------------C---ceEEccCCcccccchhHHHHH
Confidence 333444445544443 4566777988 5556553332100 0 011111245899999999999
Q ss_pred HHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhH
Q 004946 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (722)
Q Consensus 204 ~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (722)
+++|. ++++|||++|||+|+ |...+|.+|..+++|+++||.||+.. |.+..
T Consensus 420 a~la~----p~~~vv~i~GDGsf~--~~~~el~Ta~~~~lpv~~vV~NN~~~-------------g~i~~---------- 470 (578)
T PRK06546 420 AQLAD----PGRQVISMSGDGGLS--MLLGELLTVKLYDLPVKVVVFNNSTL-------------GMVKL---------- 470 (578)
T ss_pred HHHhC----CCCcEEEEEcCchHh--hhHHHHHHHHHhCCCeEEEEEECCcc-------------ccHHH----------
Confidence 99985 589999999999997 78889999999999999999999862 22210
Q ss_pred HHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEEE
Q 004946 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVH 363 (722)
Q Consensus 284 ~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~ 363 (722)
.+.. . +.. ....+.-.+++..++++||+++..+ .+.++|.++++++.+ .++|++|+
T Consensus 471 ~q~~-~---------~~~---------~~~~~~~~~df~~lA~a~G~~~~~v---~~~~el~~al~~a~~--~~gp~lIe 526 (578)
T PRK06546 471 EMLV-D---------GLP---------DFGTDHPPVDYAAIAAALGIHAVRV---EDPKDVRGALREAFA--HPGPALVD 526 (578)
T ss_pred HHHh-c---------CCC---------cccccCCCCCHHHHHHHCCCeeEEe---CCHHHHHHHHHHHHh--CCCCEEEE
Confidence 0000 0 000 0000111245678999999998854 689999999999987 58999999
Q ss_pred EEeeccC
Q 004946 364 VVTEENR 370 (722)
Q Consensus 364 v~T~kG~ 370 (722)
|.+.+..
T Consensus 527 v~~~~~~ 533 (578)
T PRK06546 527 VVTDPNA 533 (578)
T ss_pred EEeCCCc
Confidence 9997553
No 99
>PRK08611 pyruvate oxidase; Provisional
Probab=99.41 E-value=3.3e-12 Score=148.85 Aligned_cols=128 Identities=15% Similarity=0.169 Sum_probs=96.7
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchh
Q 004946 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (722)
Q Consensus 190 ~~G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (722)
+.|++|+++++|+|+++|. ++++|||++|||+|+ |..++|.+|.++++|+++||.||+. +|
T Consensus 406 ~~g~mG~glpaaiGa~la~----p~~~Vv~i~GDGsf~--m~~~eL~Ta~r~~l~~iivV~NN~~-------------~g 466 (576)
T PRK08611 406 WLGTMGCGLPGAIAAKIAF----PDRQAIAICGDGGFS--MVMQDFVTAVKYKLPIVVVVLNNQQ-------------LA 466 (576)
T ss_pred CchhhhhhHHHHHHHHHhC----CCCcEEEEEcccHHh--hhHHHHHHHHHhCCCeEEEEEeCCc-------------ch
Confidence 3589999999999999984 589999999999997 8899999999999999988888875 23
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHH
Q 004946 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (722)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~ 349 (722)
.+. .. ++.. +.. .+...+-.+++..++++||.++..+ ++.++|.++|+
T Consensus 467 ~i~-~~---------q~~~----~~~---------------~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~eL~~al~ 514 (576)
T PRK08611 467 FIK-YE---------QQAA----GEL---------------EYAIDLSDMDYAKFAEACGGKGYRV---EKAEELDPAFE 514 (576)
T ss_pred HHH-HH---------HHHh----cCC---------------cccccCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHHH
Confidence 221 00 0000 000 0000111245688999999999866 89999999999
Q ss_pred HHHhcCCCCCEEEEEEeeccC
Q 004946 350 EVASLGSMGPVLVHVVTEENR 370 (722)
Q Consensus 350 ~a~~~~~~~P~lI~v~T~kG~ 370 (722)
++.+ .++|++|+|.+.+..
T Consensus 515 ~a~~--~~~p~lIeV~vd~~~ 533 (576)
T PRK08611 515 EALA--QDKPVIIDVYVDPNA 533 (576)
T ss_pred HHHh--CCCCEEEEEEeCCcc
Confidence 9987 589999999997543
No 100
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=99.41 E-value=3.5e-12 Score=148.81 Aligned_cols=175 Identities=14% Similarity=0.215 Sum_probs=115.7
Q ss_pred chHHHHHHHHhhccCCCCcEEEecCC-chHHHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004946 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (722)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G 203 (722)
+....+...|...++ +++.++.|.| |+.|+..++.-+.. + ...+...+.|++|+++|+|+|
T Consensus 387 i~~~~v~~~l~~~l~-~~~ivv~d~g~~~~~~~~~~~~~~~--------~---------~~~~~~~g~gsmG~~l~~aiG 448 (578)
T PRK06112 387 IRPERIMAELQAVLT-GDTIVVADASYSSIWVANFLTARRA--------G---------MRFLTPRGLAGLGWGVPMAIG 448 (578)
T ss_pred cCHHHHHHHHHHhCC-CCCEEEEcccHHHHHHHHhcCccCC--------C---------ceEECCCCccccccHHHHHHH
Confidence 444455555554443 4677778988 66666533321100 0 001111245889999999999
Q ss_pred HHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhH
Q 004946 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (722)
Q Consensus 204 ~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (722)
+++| .++++|||++|||+++ |++++|++|.++++|+++||.||+.. |.+. ..++..
T Consensus 449 a~la----~~~~~vv~i~GDGsf~--~~~~el~ta~~~~l~~~~vv~NN~~~-------------g~~~-~~~~~~---- 504 (578)
T PRK06112 449 AKVA----RPGAPVICLVGDGGFA--HVWAELETARRMGVPVTIVVLNNGIL-------------GFQK-HAETVK---- 504 (578)
T ss_pred HHhh----CCCCcEEEEEcchHHH--hHHHHHHHHHHhCCCeEEEEEeCCcc-------------CCEE-eccccc----
Confidence 9987 4588999999999996 89999999999999999999999852 1100 000000
Q ss_pred HHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEEE
Q 004946 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVH 363 (722)
Q Consensus 284 ~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~ 363 (722)
.+... . ..++-.+++..++++||+++..+ ++.++|.++|+++.+ .++|++||
T Consensus 505 --------------~~~~~--------~-~~~~~~~d~~~~A~a~G~~~~~v---~~~~el~~al~~a~~--~~gp~lIe 556 (578)
T PRK06112 505 --------------FGTHT--------D-ACHFAAVDHAAIARACGCDGVRV---EDPAELAQALAAAMA--APGPTLIE 556 (578)
T ss_pred --------------cCCcc--------c-cCcCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHHHHHHh--CCCCEEEE
Confidence 00000 0 00001234577999999999855 689999999999987 58999999
Q ss_pred EEeecc
Q 004946 364 VVTEEN 369 (722)
Q Consensus 364 v~T~kG 369 (722)
|++.+.
T Consensus 557 v~~~~~ 562 (578)
T PRK06112 557 VITDPS 562 (578)
T ss_pred EEcCcc
Confidence 999654
No 101
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=99.41 E-value=5.6e-12 Score=146.28 Aligned_cols=175 Identities=19% Similarity=0.241 Sum_probs=119.0
Q ss_pred cchHHHHHHHHhhccCCCCcEEEecCC-chHHHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHH
Q 004946 124 SLAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGL 202 (722)
Q Consensus 124 slg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~ 202 (722)
.+....+...|...++ +++.++.|.| |+.|....+.-++. . +.....+.|++|+++|+|+
T Consensus 351 ~~~~~~~~~~l~~~~~-~~~iiv~d~g~~~~~~~~~~~~~~~--------~----------~~~~~~~~g~mG~glpaAi 411 (548)
T PRK08978 351 AIYAPALLKQLSDRKP-ADTVVTTDVGQHQMWVAQHMRFTRP--------E----------NFITSSGLGTMGFGLPAAI 411 (548)
T ss_pred CcCHHHHHHHHHHhCC-CCcEEEecCcHHHHHHHHhcccCCC--------C----------eEEeCCchhhhhchHHHHH
Confidence 3444556666665553 5677888999 44454433321110 0 1111124589999999999
Q ss_pred HHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhh
Q 004946 203 GMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSK 282 (722)
Q Consensus 203 G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~ 282 (722)
|+++|. ++++|||++|||+|+ |...+|.+|.+++.|+++||.||+. .|.+..
T Consensus 412 Ga~la~----p~~~vv~i~GDG~f~--~~~~eL~ta~~~~l~v~ivV~NN~~-------------~~~~~~--------- 463 (548)
T PRK08978 412 GAQVAR----PDDTVICVSGDGSFM--MNVQELGTIKRKQLPVKIVLLDNQR-------------LGMVRQ--------- 463 (548)
T ss_pred HHHHhC----CCCcEEEEEccchhh--ccHHHHHHHHHhCCCeEEEEEeCCc-------------cHHHHH---------
Confidence 999984 589999999999996 8889999999999999999999885 232211
Q ss_pred HHHHHHHHHhhhhhhcCccHHHHHHHHHHHh-hcc-cCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCE
Q 004946 283 SFRQLREVAKGMTKRIGRGMHEWAAKVDEYA-RGM-IGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPV 360 (722)
Q Consensus 283 ~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~-~~~-~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~ 360 (722)
.++.. + +. ++. .++ -.++...++++||+++..+ .+.++|.++|+++.+ .++|.
T Consensus 464 -~~~~~---~------~~----------~~~~~~~~~~~d~~~la~a~G~~~~~v---~~~~el~~al~~a~~--~~~p~ 518 (548)
T PRK08978 464 -WQQLF---F------DE----------RYSETDLSDNPDFVMLASAFGIPGQTI---TRKDQVEAALDTLLN--SEGPY 518 (548)
T ss_pred -HHHHH---h------CC----------cceecCCCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHHHHHh--CCCCE
Confidence 00000 0 00 000 001 1245678999999999866 789999999999987 58999
Q ss_pred EEEEEeeccC
Q 004946 361 LVHVVTEENR 370 (722)
Q Consensus 361 lI~v~T~kG~ 370 (722)
+|||.+.+..
T Consensus 519 lIeV~id~~~ 528 (548)
T PRK08978 519 LLHVSIDELE 528 (548)
T ss_pred EEEEEecCcc
Confidence 9999997544
No 102
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=99.41 E-value=2.5e-12 Score=129.01 Aligned_cols=134 Identities=15% Similarity=0.144 Sum_probs=92.1
Q ss_pred CCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhh
Q 004946 192 GHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINAL 271 (722)
Q Consensus 192 G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l 271 (722)
|.+|+++|+|+|+++|. ++++||+++|||++. .|..++|.+|.+++.|+++||.||+...+-...+......+..
T Consensus 51 g~mG~glpaAiGa~la~----p~r~Vv~i~GDGs~f-~m~~~eL~ta~~~~lpv~iiVlnN~~yg~~~~~~~~~~~~~~~ 125 (193)
T cd03375 51 TLHGRALAVATGVKLAN----PDLTVIVVSGDGDLA-AIGGNHFIHAARRNIDITVIVHNNQIYGLTKGQASPTTPEGFK 125 (193)
T ss_pred hhhccHHHHHHHHHHhC----CCCeEEEEeccchHh-hccHHHHHHHHHhCCCeEEEEEcCcccccCCCccCCCCCCCCc
Confidence 78899999999999884 689999999999941 3778999999999999999999998632111001000000000
Q ss_pred hhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHH
Q 004946 272 SSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEV 351 (722)
Q Consensus 272 ~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a 351 (722)
. . ....+.. ...++...+++++|+.++..+.-.+.++|.++|+++
T Consensus 126 ~---------------~------~~~~~~~--------------~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~a 170 (193)
T cd03375 126 T---------------K------TTPYGNI--------------EEPFNPLALALAAGATFVARGFSGDIKQLKEIIKKA 170 (193)
T ss_pred c---------------c------CCCCCCC--------------CCCCCHHHHHHHCCCCEEEEEecCCHHHHHHHHHHH
Confidence 0 0 0000000 001345678999999986433447899999999999
Q ss_pred HhcCCCCCEEEEEEee
Q 004946 352 ASLGSMGPVLVHVVTE 367 (722)
Q Consensus 352 ~~~~~~~P~lI~v~T~ 367 (722)
.+ .++|++|++.+.
T Consensus 171 l~--~~gp~vIev~~~ 184 (193)
T cd03375 171 IQ--HKGFSFVEVLSP 184 (193)
T ss_pred Hh--cCCCEEEEEECC
Confidence 87 589999999874
No 103
>PRK12474 hypothetical protein; Provisional
Probab=99.39 E-value=4.7e-12 Score=145.89 Aligned_cols=175 Identities=14% Similarity=0.136 Sum_probs=114.2
Q ss_pred chHHHHHHHHhhccCCCCcEEEecCC-chHHHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004946 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (722)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G 203 (722)
+....+...|..+++ +++.|+.|.| |+.|....+.-++ |. +.....+ |++|+++|+|+|
T Consensus 341 i~~~~~~~~l~~~l~-~d~iv~~d~g~~~~~~~~~~~~~~---------------p~---~~~~~~~-gsmG~glpaAiG 400 (518)
T PRK12474 341 LNSLGVAQLIAHRTP-DQAIYADEALTSGLFFDMSYDRAR---------------PH---THLPLTG-GSIGQGLPLAAG 400 (518)
T ss_pred cCHHHHHHHHHHHCC-CCeEEEECCCcCHHHHHHhhcccC---------------CC---CEEccCC-CccCccHHHHHH
Confidence 444445555555553 4566777888 6656554332110 00 0011113 999999999999
Q ss_pred HHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhH
Q 004946 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (722)
Q Consensus 204 ~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (722)
+++|. ++++|||++|||+|+ |+.++|.+|.++++|+++||.||+. +|.+....+..
T Consensus 401 a~lA~----p~r~vv~i~GDG~f~--m~~qEL~Ta~r~~lpv~iiV~NN~~-------------y~~i~~~~~~~----- 456 (518)
T PRK12474 401 AAVAA----PDRKVVCPQGDGGAA--YTMQALWTMARENLDVTVVIFANRS-------------YAILNGELQRV----- 456 (518)
T ss_pred HHHHC----CCCcEEEEEcCchhc--chHHHHHHHHHHCCCcEEEEEcCCc-------------chHHHHHHHhh-----
Confidence 99995 589999999999997 9999999999999999999999985 23221000000
Q ss_pred HHHHHHHHhhhhhhcCccHHHHHHHHHHHhhccc--CCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCEE
Q 004946 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMI--GPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVL 361 (722)
Q Consensus 284 ~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~l 361 (722)
..... +... ..+ .+.. .+++..++++||+++..+ .+.++|.++|+++.+ .++|.+
T Consensus 457 -------~~~~~---~~~~-------~~~-~~~~~~~~d~~~lA~a~G~~~~rv---~~~~eL~~al~~a~~--~~~p~l 513 (518)
T PRK12474 457 -------GAQGA---GRNA-------LSM-LDLHNPELNWMKIAEGLGVEASRA---TTAEEFSAQYAAAMA--QRGPRL 513 (518)
T ss_pred -------cCCCC---Cccc-------ccc-ccCCCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHHHHHHc--CCCCEE
Confidence 00000 0000 000 0011 135678999999998866 789999999999987 589999
Q ss_pred EEEEe
Q 004946 362 VHVVT 366 (722)
Q Consensus 362 I~v~T 366 (722)
|+|.+
T Consensus 514 iev~~ 518 (518)
T PRK12474 514 IEAMI 518 (518)
T ss_pred EEEEC
Confidence 99874
No 104
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.39 E-value=4.6e-12 Score=147.71 Aligned_cols=176 Identities=19% Similarity=0.170 Sum_probs=118.2
Q ss_pred chHHHHHHHHhhccCCCCcEEEecCC-chHHHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004946 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (722)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G 203 (722)
+....+...|...++ +++.++.|.| |+.|+...+.-++ |. +....-+.|++|+++|+|+|
T Consensus 372 i~~~~~~~~l~~~l~-~d~ivv~d~G~~~~~~~~~~~~~~---------------p~---~~~~~~~~g~mG~glpaaiG 432 (574)
T PRK07979 372 IKPQAVIETLWRLTK-GDAYVTSDVGQHQMFAALYYPFDK---------------PR---RWINSGGLGTMGFGLPAALG 432 (574)
T ss_pred cCHHHHHHHHHhhcC-CCEEEEeCCcHHHHHHHHhcccCC---------------CC---eEEeCCCccchhhHHHHHHH
Confidence 555566666655443 4567778998 5556653332111 00 11111245899999999999
Q ss_pred HHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhH
Q 004946 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (722)
Q Consensus 204 ~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (722)
+++|. ++++|||++|||+|+ |+.++|.+|.++++|+++||.||+. +|.+..
T Consensus 433 a~la~----p~~~vv~i~GDG~f~--m~~~eL~Ta~r~~l~v~ivV~NN~~-------------yg~i~~---------- 483 (574)
T PRK07979 433 VKMAL----PEETVVCVTGDGSIQ--MNIQELSTALQYELPVLVLNLNNRY-------------LGMVKQ---------- 483 (574)
T ss_pred HHHhC----CCCeEEEEEcchhhh--ccHHHHHHHHHhCCCeEEEEEeCch-------------hhHHHH----------
Confidence 99984 588999999999996 9999999999999999999999985 333211
Q ss_pred HHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcc-cCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhc-CCCCCEE
Q 004946 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM-IGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASL-GSMGPVL 361 (722)
Q Consensus 284 ~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~-~~~~P~l 361 (722)
+++.... + ... .... -.+++..++++||.+...+ .+.++|.++|+++.+. +.++|.+
T Consensus 484 ~q~~~~~--------~-~~~---------~~~~~~~~d~~~iA~a~G~~g~~v---~~~~eL~~al~~a~~~~~~~~p~l 542 (574)
T PRK07979 484 WQDMIYS--------G-RHS---------QSYMQSLPDFVRLAEAYGHVGIQI---SHPDELESKLSEALEQVRNNRLVF 542 (574)
T ss_pred HHHHhcC--------C-ccc---------cccCCCCCCHHHHHHHCCCEEEEE---CCHHHHHHHHHHHHhccCCCCcEE
Confidence 0000000 0 000 0000 0245678999999998865 7899999999998762 1278999
Q ss_pred EEEEeecc
Q 004946 362 VHVVTEEN 369 (722)
Q Consensus 362 I~v~T~kG 369 (722)
|+|.+.+-
T Consensus 543 IeV~i~~~ 550 (574)
T PRK07979 543 VDVTVDGS 550 (574)
T ss_pred EEEEECCc
Confidence 99999643
No 105
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=99.39 E-value=6.9e-12 Score=146.82 Aligned_cols=177 Identities=17% Similarity=0.165 Sum_probs=116.1
Q ss_pred chHHHHHHHHhhccCCCCcEEEecCC-chHHHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004946 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (722)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G 203 (722)
+....+...|...++ +++.|+.|+| |+.|.+..+.-.+ +. ......+.|++|+++|+|+|
T Consensus 366 l~p~~~~~~l~~~l~-~~~ivv~d~G~~~~~~~~~~~~~~---------------~~---~~~~s~~~g~mG~glpaaiG 426 (597)
T PRK08273 366 VNPQRVFWELSPRLP-DNAILTADSGSCANWYARDLRMRR---------------GM---MASLSGTLATMGPAVPYAIA 426 (597)
T ss_pred cCHHHHHHHHHhhCC-CCeEEEECCcHHHHHHHHhCCCCC---------------CC---eEEecCccccccchHHHHHH
Confidence 444555555544443 4555778999 5556653332110 00 00111245899999999999
Q ss_pred HHHHHHHcCCCCeEEEEecCCCcccchH-HHHHHHhhhc-----CCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhh
Q 004946 204 MAVARDIKGKRECIVTVISNGTTMAGQA-YEAMSNAGYL-----DSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSR 277 (722)
Q Consensus 204 ~A~A~~l~~~~~~Vv~viGDGa~~~G~~-~EAln~A~~~-----~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~ 277 (722)
+++|. ++++|||++|||+|+ |+ .++|.+|.++ ++|+++||.||+. +|.+.. .++
T Consensus 427 a~la~----p~~~Vv~i~GDG~f~--m~~~~EL~Ta~r~~~~~~~lpviivV~NN~~-------------~~~i~~-~q~ 486 (597)
T PRK08273 427 AKFAH----PDRPVIALVGDGAMQ--MNGMAELITVAKYWRQWSDPRLIVLVLNNRD-------------LNQVTW-EQR 486 (597)
T ss_pred HHHhC----CCCcEEEEEcchhHh--ccchHHHHHHHHHhhcccCCCEEEEEEeCCc-------------chHHHH-HHH
Confidence 99985 589999999999996 88 6999999999 8999999999985 232210 000
Q ss_pred hhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCC
Q 004946 278 IQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSM 357 (722)
Q Consensus 278 ~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~ 357 (722)
.. .+.... ....++-.+++..++++||+++..+ .+.++|.++|+++.+ .+
T Consensus 487 ~~------------------~~~~~~-------~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~eL~~al~~a~~--~~ 536 (597)
T PRK08273 487 VM------------------EGDPKF-------EASQDLPDVPYARFAELLGLKGIRV---DDPEQLGAAWDEALA--AD 536 (597)
T ss_pred Hh------------------cCCCcc-------cccccCCCCCHHHHHHHCCCEEEEE---CCHHHHHHHHHHHHh--CC
Confidence 00 000000 0000011234678999999999866 789999999999987 58
Q ss_pred CCEEEEEEeeccC
Q 004946 358 GPVLVHVVTEENR 370 (722)
Q Consensus 358 ~P~lI~v~T~kG~ 370 (722)
+|++|+|.+.+..
T Consensus 537 ~p~lIeV~~~~~~ 549 (597)
T PRK08273 537 RPVVLEVKTDPNV 549 (597)
T ss_pred CCEEEEEEeCCCC
Confidence 9999999996543
No 106
>PRK07586 hypothetical protein; Validated
Probab=99.39 E-value=4.3e-12 Score=146.09 Aligned_cols=175 Identities=13% Similarity=0.111 Sum_probs=113.4
Q ss_pred chHHHHHHHHhhccCCCCcEEEecCC-chHHHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004946 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (722)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G 203 (722)
+....+...|..+++ +++.|+.|.| |+.|+..++.-.. |. +.+...+ |++|+++|+|+|
T Consensus 337 i~~~~~~~~l~~~l~-~~~ivv~d~g~~~~~~~~~~~~~~---------------~~---~~~~~~~-g~mG~~lpaaiG 396 (514)
T PRK07586 337 LTPEAIAQVIAALLP-ENAIVVDESITSGRGFFPATAGAA---------------PH---DWLTLTG-GAIGQGLPLATG 396 (514)
T ss_pred cCHHHHHHHHHHhCC-CCeEEEeCCCcCHHHHHHhccccC---------------CC---CEEccCC-cccccHHHHHHH
Confidence 444555555655554 4567778988 4445543322100 10 1111124 889999999999
Q ss_pred HHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhH
Q 004946 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (722)
Q Consensus 204 ~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (722)
+++|+ ++++|||++|||+|+ |+.++|.+|.++++|+++||.||+. +|.+..
T Consensus 397 a~lA~----p~r~Vv~i~GDGsf~--m~~~EL~Ta~~~~lpv~ivV~NN~~-------------y~~~~~---------- 447 (514)
T PRK07586 397 AAVAC----PDRKVLALQGDGSAM--YTIQALWTQARENLDVTTVIFANRA-------------YAILRG---------- 447 (514)
T ss_pred HHHhC----CCCeEEEEEechHHH--hHHHHHHHHHHcCCCCEEEEEeCch-------------hHHHHH----------
Confidence 99985 589999999999996 8999999999999999888888874 232211
Q ss_pred HHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcc--cCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCEE
Q 004946 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM--IGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVL 361 (722)
Q Consensus 284 ~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~l 361 (722)
.++.. ... ..+... ..+. +. ..+++..++++||+++..+ .+.++|.++++++.+ .++|++
T Consensus 448 ~~~~~--~~~---~~~~~~-------~~~~-~~~~~~~d~~~lA~a~G~~~~~V---~~~~el~~al~~a~~--~~~p~l 509 (514)
T PRK07586 448 ELARV--GAG---NPGPRA-------LDML-DLDDPDLDWVALAEGMGVPARRV---TTAEEFADALAAALA--EPGPHL 509 (514)
T ss_pred HHHHh--cCC---CCCccc-------cccc-cCCCCCCCHHHHHHHCCCcEEEe---CCHHHHHHHHHHHHc--CCCCEE
Confidence 00000 000 000000 0000 01 0245678999999999865 789999999999987 589999
Q ss_pred EEEEe
Q 004946 362 VHVVT 366 (722)
Q Consensus 362 I~v~T 366 (722)
|+|.+
T Consensus 510 iev~~ 514 (514)
T PRK07586 510 IEAVV 514 (514)
T ss_pred EEEEC
Confidence 99863
No 107
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=99.39 E-value=8.7e-12 Score=145.38 Aligned_cols=174 Identities=16% Similarity=0.195 Sum_probs=118.3
Q ss_pred chHHHHHHHHhhccCCCCcEEEecCC-chHHHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004946 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (722)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G 203 (722)
+..-.+...|..+++ +++.++.|+| |+.|+..++.-.+ |. +.....+.|++|+++|+|+|
T Consensus 372 i~~~~~~~~l~~~l~-~~~ii~~d~g~~~~~~~~~~~~~~---------------p~---~~~~~~~~g~mG~glpaAiG 432 (572)
T PRK06456 372 LKPWKIMKTIRQALP-RDAIVTTGVGQHQMWAEVFWEVLE---------------PR---TFLTSSGMGTMGFGLPAAMG 432 (572)
T ss_pred cCHHHHHHHHHHhCC-CCEEEEECCcHHHHHHHHhcCcCC---------------CC---cEEcCCCcccccchhHHHHH
Confidence 444455556655554 5666778998 4556553332110 00 11111245899999999999
Q ss_pred HHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhH
Q 004946 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (722)
Q Consensus 204 ~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (722)
+++|. ++++|||++|||+|+ |+..+|.+|..+++|+++||.||+. +|.+..
T Consensus 433 a~la~----p~~~vv~i~GDG~f~--m~~~eL~Ta~~~~l~i~ivV~NN~~-------------yg~i~~---------- 483 (572)
T PRK06456 433 AKLAR----PDKVVVDLDGDGSFL--MTGTNLATAVDEHIPVISVIFDNRT-------------LGLVRQ---------- 483 (572)
T ss_pred HHHhC----CCCeEEEEEccchHh--cchHHHHHHHHhCCCeEEEEEECCc-------------hHHHHH----------
Confidence 99984 588999999999997 8889999999999999999999985 232211
Q ss_pred HHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcc-cCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEE
Q 004946 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM-IGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLV 362 (722)
Q Consensus 284 ~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI 362 (722)
+++.. . +.... ..++ -.+++..++++||.++..+ ++.++|.++|+++.+ .++|.+|
T Consensus 484 ~q~~~-~--------~~~~~---------~~~~~~~~d~~~~A~a~G~~~~~v---~~~~eL~~al~~a~~--~~~p~lI 540 (572)
T PRK06456 484 VQDLF-F--------GKRIV---------GVDYGPSPDFVKLAEAFGALGFNV---TTYEDIEKSLKSAIK--EDIPAVI 540 (572)
T ss_pred HHHHh-h--------CCCcc---------cccCCCCCCHHHHHHHCCCeeEEe---CCHHHHHHHHHHHHh--CCCCEEE
Confidence 00000 0 00000 0011 1245688999999998865 889999999999987 5899999
Q ss_pred EEEeecc
Q 004946 363 HVVTEEN 369 (722)
Q Consensus 363 ~v~T~kG 369 (722)
||.+.+.
T Consensus 541 ev~v~~~ 547 (572)
T PRK06456 541 RVPVDKE 547 (572)
T ss_pred EEEeCcc
Confidence 9999753
No 108
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.39 E-value=8.2e-12 Score=146.03 Aligned_cols=174 Identities=17% Similarity=0.176 Sum_probs=117.4
Q ss_pred chHHHHHHHHhhccCCCCcE-EEecCC-chHHHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHH
Q 004946 125 LAAVELTVALHHVFHAPVDK-ILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGL 202 (722)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~-iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~ 202 (722)
+..-.+...|..+++ ++|. ++.|.| |+.|+..++.-++. . +.+...+.|++|+++|+|+
T Consensus 380 l~~~~~~~~l~~~l~-~~d~iv~~d~G~~~~~~~~~~~~~~p--------~----------~~~~~~~~gsmG~glpaai 440 (595)
T PRK09107 380 IMPQYAIQRLYELTK-GRDTYITTEVGQHQMWAAQFFGFEEP--------N----------RWMTSGGLGTMGYGLPAAL 440 (595)
T ss_pred cCHHHHHHHHHHhCC-CCCeEEEECCcHHHHHHHHhcccCCC--------C----------eEEcCCCchhhhhhHHHHH
Confidence 334445555554554 4455 567888 56676644432111 0 1111124589999999999
Q ss_pred HHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhh
Q 004946 203 GMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSK 282 (722)
Q Consensus 203 G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~ 282 (722)
|+++|. ++++|||++|||+|+ |+.++|.+|.++++|+++||.||+. ++.+..
T Consensus 441 Ga~lA~----p~r~Vv~i~GDG~f~--m~~~EL~Ta~r~~lpvi~vV~NN~~-------------y~~i~~--------- 492 (595)
T PRK09107 441 GVQIAH----PDALVIDIAGDASIQ--MCIQEMSTAVQYNLPVKIFILNNQY-------------MGMVRQ--------- 492 (595)
T ss_pred HHHHhC----CCCeEEEEEcCchhh--ccHHHHHHHHHhCCCeEEEEEeCCc-------------cHHHHH---------
Confidence 999984 589999999999996 8999999999999999999999985 232210
Q ss_pred HHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcc-cCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCEE
Q 004946 283 SFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM-IGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVL 361 (722)
Q Consensus 283 ~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~l 361 (722)
+++... +.... .... -.+++..++++||+++..+ .+.++|.++|+++.+ .++|+|
T Consensus 493 -~q~~~~---------~~~~~---------~~~~~~~~d~~~lA~a~G~~~~~v---~~~~el~~al~~a~~--~~~p~l 548 (595)
T PRK09107 493 -WQQLLH---------GNRLS---------HSYTEAMPDFVKLAEAYGAVGIRC---EKPGDLDDAIQEMID--VDKPVI 548 (595)
T ss_pred -HHHHHh---------CCccc---------cccCCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHHHHHh--CCCCEE
Confidence 000000 00000 0000 0245678999999999865 789999999999987 589999
Q ss_pred EEEEeecc
Q 004946 362 VHVVTEEN 369 (722)
Q Consensus 362 I~v~T~kG 369 (722)
|+|.+.+-
T Consensus 549 IeV~i~~~ 556 (595)
T PRK09107 549 FDCRVANL 556 (595)
T ss_pred EEEEecCc
Confidence 99999643
No 109
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.38 E-value=5.2e-12 Score=148.38 Aligned_cols=173 Identities=16% Similarity=0.203 Sum_probs=117.4
Q ss_pred chHHHHHHHHhhccCCCCcEEEecCC-chHHHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004946 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (722)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G 203 (722)
+....+...|...+ |++.|+.|+| |+.|...++. .+ |. +.....+.|.+|+++|+|+|
T Consensus 387 l~~~~v~~~l~~~~--~d~i~~~D~G~~~~~~~~~~~-~~---------------p~---~~~~s~~~g~mG~glpaAiG 445 (616)
T PRK07418 387 IYPQEVLLAVRDLA--PDAYYTTDVGQHQMWAAQFLR-NG---------------PR---RWISSAGLGTMGFGMPAAMG 445 (616)
T ss_pred cCHHHHHHHHHhhC--CCcEEEECChHHHHHHHHhhh-cC---------------CC---eEEcCCCccccccHHHHHHH
Confidence 44445555554443 4577888999 4455553332 10 10 11111245899999999999
Q ss_pred HHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhH
Q 004946 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (722)
Q Consensus 204 ~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (722)
+++|. ++++|||++|||+|+ |+..+|.+|.++++|+++||.||+. +|.+.. .
T Consensus 446 A~lA~----p~r~Vv~i~GDG~f~--m~~~eL~Ta~r~~lpvi~vV~NN~~-------------~g~i~~-~-------- 497 (616)
T PRK07418 446 VKVAL----PDEEVICIAGDASFL--MNIQELGTLAQYGINVKTVIINNGW-------------QGMVRQ-W-------- 497 (616)
T ss_pred HHHhC----CCCcEEEEEcchHhh--hhHHHHHHHHHhCCCeEEEEEECCc-------------chHHHH-H--------
Confidence 99984 589999999999997 8999999999999999999999986 332211 0
Q ss_pred HHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcc--cCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCEE
Q 004946 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM--IGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVL 361 (722)
Q Consensus 284 ~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~l 361 (722)
++.. ... ...+ .++ -.++...++++||.++..+ .+.++|.++|+++.+ .++|+|
T Consensus 498 -q~~~-~~~---~~~~--------------~~~~~~~~d~~~~A~a~G~~g~~V---~~~~el~~al~~a~~--~~~p~l 553 (616)
T PRK07418 498 -QESF-YGE---RYSA--------------SNMEPGMPDFVKLAEAFGVKGMVI---SERDQLKDAIAEALA--HDGPVL 553 (616)
T ss_pred -HHHh-cCC---Ccee--------------ecCCCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHHHHHHh--CCCCEE
Confidence 0000 000 0000 000 0145678999999999865 789999999999987 588999
Q ss_pred EEEEeeccC
Q 004946 362 VHVVTEENR 370 (722)
Q Consensus 362 I~v~T~kG~ 370 (722)
|+|.+.+..
T Consensus 554 IeV~i~~~~ 562 (616)
T PRK07418 554 IDVHVRRDE 562 (616)
T ss_pred EEEEecCcc
Confidence 999997544
No 110
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=99.38 E-value=9e-12 Score=145.22 Aligned_cols=173 Identities=12% Similarity=0.096 Sum_probs=115.9
Q ss_pred chHHHHHHHHhhccCCCCcEEEecCC-chHHHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004946 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (722)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G 203 (722)
+....+...|...+. +++.++.|.| |+.|.+.++.-+. .+ +.....+.|++|+++|+|+|
T Consensus 359 i~~~~~~~~l~~~l~-~d~ii~~D~g~~~~~~~~~~~~~~--------~~----------~~~~~~~~gsmG~glpaAiG 419 (575)
T TIGR02720 359 LQAYQVYRAINKIAE-DDAIYSIDVGDININSNRHLKMTP--------KN----------KWITSNLFATMGVGVPGAIA 419 (575)
T ss_pred cCHHHHHHHHHHhCC-CCcEEEeCCcHHHHHHHHhCCcCC--------CC----------eEEcCCCcchhhchHHHHHH
Confidence 444445555544443 5667778998 6666664332110 00 00111245899999999999
Q ss_pred HHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhH
Q 004946 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (722)
Q Consensus 204 ~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (722)
+++|. ++++||+++|||+|+ |+.++|.++..+++|+++||.||+. +|.+...
T Consensus 420 a~la~----p~r~Vv~i~GDGsf~--m~~~eL~Tavr~~lpi~~VV~NN~~-------------yg~i~~~--------- 471 (575)
T TIGR02720 420 AKLNY----PDRQVFNLAGDGAFS--MTMQDLLTQVQYHLPVINIVFSNCT-------------YGFIKDE--------- 471 (575)
T ss_pred HHHhC----CCCcEEEEEcccHHH--hhHHHHHHHHHhCCCeEEEEEeCCc-------------cHHHHHH---------
Confidence 99884 589999999999997 8899999999999999999888775 2322110
Q ss_pred HHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHH--hcCCCCCEE
Q 004946 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVA--SLGSMGPVL 361 (722)
Q Consensus 284 ~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~--~~~~~~P~l 361 (722)
++... .... ..++-.+++..++++||+++... .+.++|.++++++. + .++|++
T Consensus 472 -~~~~~----------~~~~---------~~~~~~~df~~iA~a~G~~~~~v---~~~~el~~al~~a~~~~--~~~p~l 526 (575)
T TIGR02720 472 -QEDTN----------QPLI---------GVDFNDADFAKIAEGVGAVGFRV---NKIEQLPAVFEQAKAIK--QGKPVL 526 (575)
T ss_pred -HHHhC----------CCcc---------cccCCCCCHHHHHHHCCCEEEEe---CCHHHHHHHHHHHHhhC--CCCcEE
Confidence 00000 0000 00111245688999999999855 78899999999987 5 589999
Q ss_pred EEEEeecc
Q 004946 362 VHVVTEEN 369 (722)
Q Consensus 362 I~v~T~kG 369 (722)
|++++.+.
T Consensus 527 iev~i~~~ 534 (575)
T TIGR02720 527 IDAKITGD 534 (575)
T ss_pred EEEEeCCC
Confidence 99999664
No 111
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.37 E-value=7e-12 Score=146.12 Aligned_cols=175 Identities=18% Similarity=0.193 Sum_probs=117.0
Q ss_pred chHHHHHHHHhhccCCCCcEEEecCCc-hHHHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004946 125 LAAVELTVALHHVFHAPVDKILWDVGE-QTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (722)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~GH-~~y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G 203 (722)
+....+...|...++ +++.++.|.|. +.|+...+.-++. +++ ...-+.|++|+++|+|+|
T Consensus 372 i~~~~~~~~l~~~l~-~d~ivv~d~G~~~~~~~~~~~~~~~-----~~~-------------~~~~~~g~mG~glpaaiG 432 (572)
T PRK08979 372 IKPQQVIETLYKLTN-GDAYVASDVGQHQMFAALYYPFDKP-----RRW-------------INSGGLGTMGFGLPAAMG 432 (572)
T ss_pred cCHHHHHHHHHHhcC-CCeEEEECCcHHHHHHHHhcCcCCC-----CeE-------------EccCCcccccchhhHHHh
Confidence 555556666655442 45667789995 4455433321110 000 111145899999999999
Q ss_pred HHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhH
Q 004946 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (722)
Q Consensus 204 ~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (722)
+++|. ++++|||++|||+|+ |+.++|.+|.++++|+++||.||+. +|.+..
T Consensus 433 a~la~----p~~~vv~i~GDG~f~--m~~~EL~Ta~r~~lpv~~vV~NN~~-------------y~~i~~---------- 483 (572)
T PRK08979 433 VKFAM----PDETVVCVTGDGSIQ--MNIQELSTALQYDIPVKIINLNNRF-------------LGMVKQ---------- 483 (572)
T ss_pred hhhhC----CCCeEEEEEcchHhh--ccHHHHHHHHHcCCCeEEEEEeCCc-------------cHHHHH----------
Confidence 99984 589999999999996 8899999999999999999988885 232211
Q ss_pred HHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcc-cCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEE
Q 004946 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM-IGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLV 362 (722)
Q Consensus 284 ~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI 362 (722)
+++.....+ ..+ ..+ ..+++..++|+||.+...+ .+.++|.++|+++.+. .++|++|
T Consensus 484 ~q~~~~~~~----~~~--------------~~~~~~~d~~~~A~a~G~~~~~v---~~~~eL~~al~~a~~~-~~~p~lI 541 (572)
T PRK08979 484 WQDMIYQGR----HSH--------------SYMDSVPDFAKIAEAYGHVGIRI---SDPDELESGLEKALAM-KDRLVFV 541 (572)
T ss_pred HHHHHhCCc----ccc--------------cCCCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHHHHHhc-CCCcEEE
Confidence 111000000 000 000 1245678999999998866 7899999999998762 3789999
Q ss_pred EEEeecc
Q 004946 363 HVVTEEN 369 (722)
Q Consensus 363 ~v~T~kG 369 (722)
+|.+.+.
T Consensus 542 ev~i~~~ 548 (572)
T PRK08979 542 DINVDET 548 (572)
T ss_pred EEEeCCc
Confidence 9999643
No 112
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=99.37 E-value=4.4e-12 Score=130.98 Aligned_cols=139 Identities=19% Similarity=0.247 Sum_probs=93.8
Q ss_pred cCCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccC-CCCcchh
Q 004946 191 AGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEE-SPKTSIN 269 (722)
Q Consensus 191 ~G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~-~~~~~~g 269 (722)
.|++|+++++|+|++++ .++++|||++|||++. .|..++|.+|++++.|+++||.||+... .|+.| ......+
T Consensus 61 ~gsmG~GlpaAiGa~~a----~p~r~VV~i~GDG~~~-~m~~~eL~ta~~~~~pv~~vVlNN~~yg-~tg~q~~~~~~~~ 134 (235)
T cd03376 61 AAAVASGIEAALKALGR----GKDITVVAFAGDGGTA-DIGFQALSGAAERGHDILYICYDNEAYM-NTGIQRSGSTPYG 134 (235)
T ss_pred HHHHHHHHHHHHHHhcc----CCCCeEEEEEcCchHH-hhHHHHHHHHHHcCCCeEEEEECCcccc-cCCCCCCCCCCCC
Confidence 36788888888887555 5689999999999951 3888999999999999999999999632 22111 0000011
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHH
Q 004946 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (722)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~ 349 (722)
.... ....+..+. -.....++...+++++|+.++..+.-++.++|.++++
T Consensus 135 ~~~~---------------------~~~~g~~~~---------~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~ 184 (235)
T cd03376 135 AWTT---------------------TTPVGKVSF---------GKKQPKKDLPLIMAAHNIPYVATASVAYPEDLYKKVK 184 (235)
T ss_pred CEee---------------------cCCCCcccc---------ccccccCCHHHHHHHcCCcEEEEEcCCCHHHHHHHHH
Confidence 0000 000000000 0000113457899999999976666789999999999
Q ss_pred HHHhcCCCCCEEEEEEee
Q 004946 350 EVASLGSMGPVLVHVVTE 367 (722)
Q Consensus 350 ~a~~~~~~~P~lI~v~T~ 367 (722)
++.+ .++|++||+.+.
T Consensus 185 ~a~~--~~gP~lIev~~~ 200 (235)
T cd03376 185 KALS--IEGPAYIHILSP 200 (235)
T ss_pred HHHh--CCCCEEEEEECC
Confidence 9987 589999999873
No 113
>PRK11269 glyoxylate carboligase; Provisional
Probab=99.37 E-value=8.1e-12 Score=146.12 Aligned_cols=186 Identities=17% Similarity=0.156 Sum_probs=117.1
Q ss_pred chHHHHHHHHhhccCCCCcEEEecCCc-hHHHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004946 125 LAAVELTVALHHVFHAPVDKILWDVGE-QTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (722)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~GH-~~y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G 203 (722)
+....+...|...+. +++.|+.|.|. +.|+..++.-++ .++ ....-+.|++|+++|+|+|
T Consensus 370 l~~~~~~~~l~~~l~-~d~ivv~d~g~~~~~~~~~~~~~~-----p~~-------------~~~~~~~G~mG~glpaAiG 430 (591)
T PRK11269 370 IKPQRVYEEMNKAFG-RDTCYVSTIGLSQIAAAQFLHVYK-----PRH-------------WINCGQAGPLGWTIPAALG 430 (591)
T ss_pred cCHHHHHHHHHHhcC-CCcEEEECCcHHHHHHHHhcccCC-----CCc-------------EEeCCccccccchhhhHHh
Confidence 445555555655443 46667788884 445553332110 000 0111135899999999999
Q ss_pred HHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhH
Q 004946 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (722)
Q Consensus 204 ~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (722)
+++|. ++++|||++|||+|+ |+.++|.+|.++++|+++||.||+. +|.+.. .++.
T Consensus 431 a~la~----p~r~Vv~i~GDG~f~--m~~~eL~Ta~~~~lpv~~vV~NN~~-------------~g~i~~-~~~~----- 485 (591)
T PRK11269 431 VRAAD----PDRNVVALSGDYDFQ--FLIEELAVGAQFNLPYIHVLVNNAY-------------LGLIRQ-AQRA----- 485 (591)
T ss_pred hhhhC----CCCcEEEEEccchhh--cCHHHHHHHHHhCCCeEEEEEeCCc-------------hhHHHH-HHHH-----
Confidence 99984 589999999999997 8889999999999999999999985 332211 0000
Q ss_pred HHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhc--CCCCCEE
Q 004946 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASL--GSMGPVL 361 (722)
Q Consensus 284 ~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~--~~~~P~l 361 (722)
|...+. .+.... .+...-...-.+++..++++||.++..+ ++.++|.++|+++.+. ..++|+|
T Consensus 486 ~~~~~~--------~~~~~~----~~~~~~~~~~~~df~~lA~a~G~~~~~v---~~~~eL~~al~~a~~~~~~~~gp~l 550 (591)
T PRK11269 486 FDMDYC--------VQLAFE----NINSPELNGYGVDHVKVAEGLGCKAIRV---FKPEDIAPALEQAKALMAEFRVPVV 550 (591)
T ss_pred hccCcc--------ceeecc----ccccccccCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHHHHHhhcccCCCcEE
Confidence 000000 000000 0000000001245678999999999866 8999999999998741 1478999
Q ss_pred EEEEeecc
Q 004946 362 VHVVTEEN 369 (722)
Q Consensus 362 I~v~T~kG 369 (722)
|+|.+.+.
T Consensus 551 ieV~v~~~ 558 (591)
T PRK11269 551 VEVILERV 558 (591)
T ss_pred EEEEeccc
Confidence 99999644
No 114
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=99.37 E-value=6.9e-12 Score=146.39 Aligned_cols=177 Identities=13% Similarity=0.107 Sum_probs=118.0
Q ss_pred chHHHHHHHHhhccCCCCcEEEecCC-chHHHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004946 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (722)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G 203 (722)
+....+...|...++ +++.|+.|+| |+.|+..++.-.+ .++ .+...+.|++|+++|+|+|
T Consensus 381 l~~~~~~~~l~~~l~-~~~iv~~d~G~~~~~~~~~~~~~~-----p~~-------------~~~~~~~g~mG~~lpaaiG 441 (579)
T TIGR03457 381 LHPRQVLRELEKAMP-EDAIVSTDIGNINSVANSYLRFEK-----PRK-------------FLAPMSFGNCGYAFPTIIG 441 (579)
T ss_pred cCHHHHHHHHHHhCC-CCeEEEECCchhHHHHHHhcCcCC-----CCe-------------EEcCCccccccchHHHHHh
Confidence 334444444544443 4667778998 5566654433110 011 1111245899999999999
Q ss_pred HHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhH
Q 004946 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (722)
Q Consensus 204 ~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (722)
+++|. ++++|||++|||+|+ |+..+|.+|.++++|+++||.||+. +|.+..
T Consensus 442 a~la~----p~~~Vv~i~GDG~f~--m~~~eL~Tavr~~lpvi~vV~NN~~-------------yg~i~~---------- 492 (579)
T TIGR03457 442 AKIAA----PDRPVVAYAGDGAWG--MSMNEIMTAVRHDIPVTAVVFRNRQ-------------WGAEKK---------- 492 (579)
T ss_pred hhhhC----CCCcEEEEEcchHHh--ccHHHHHHHHHhCCCeEEEEEECcc-------------hHHHHH----------
Confidence 99984 589999999999996 8889999999999999999988885 232211
Q ss_pred HHHHHHHHhhhhhhcCccHHHHHHHHHHHhh-cccC-CChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhc-CCCCCE
Q 004946 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYAR-GMIG-PQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASL-GSMGPV 360 (722)
Q Consensus 284 ~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~-~~~~-~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~-~~~~P~ 360 (722)
.++.. .+.. +.. ++-. +++..++++||.++..+ ++.++|.++|+++.+. ..++|+
T Consensus 493 ~~~~~---------~~~~----------~~~~~~~~~~d~~~lA~a~G~~g~~v---~~~~el~~al~~a~~~~~~~~p~ 550 (579)
T TIGR03457 493 NQVDF---------YNNR----------FVGTELESELSFAGIADAMGAKGVVV---DKPEDVGPALKKAIAAQAEGKTT 550 (579)
T ss_pred HHHHh---------hCCc----------ceeccCCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHHHHHhhCCCCCcE
Confidence 00000 0000 000 0111 35678999999999865 8899999999998652 137899
Q ss_pred EEEEEeeccCC
Q 004946 361 LVHVVTEENRR 371 (722)
Q Consensus 361 lI~v~T~kG~G 371 (722)
+|+|.+.+..+
T Consensus 551 lieV~v~~~~~ 561 (579)
T TIGR03457 551 VIEIVCTRELG 561 (579)
T ss_pred EEEEEeCCCcC
Confidence 99999977664
No 115
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.37 E-value=6.1e-12 Score=146.34 Aligned_cols=175 Identities=15% Similarity=0.137 Sum_probs=116.2
Q ss_pred chHHHHHHHHhhccCCCCcEEEecCC-chHHHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004946 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (722)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G 203 (722)
+....+...|...++ +++.++.|.| |..|...++.-+. .+ +....-+.|++|+++|+|+|
T Consensus 365 i~~~~~~~~l~~~l~-~d~iv~~d~g~~~~~~~~~~~~~~-----~~-------------~~~~~~~~g~mG~~l~~aiG 425 (563)
T PRK08527 365 LKPQWVIERVGELLG-DDAIISTDVGQHQMWVAQFYPFNY-----PR-------------QLATSGGLGTMGYGLPAALG 425 (563)
T ss_pred cCHHHHHHHHHhhCC-CCeEEEECCcHHHHHHHHhcccCC-----CC-------------eEEcCCCcccccchHHHHHH
Confidence 444455555655553 3456777998 5555543332110 00 11111245899999999999
Q ss_pred HHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhH
Q 004946 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (722)
Q Consensus 204 ~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (722)
+++|. ++++|||++|||+|+ |+..+|.+|..+++|+++||.||+. +|.+..
T Consensus 426 a~la~----p~~~vv~i~GDG~f~--m~~~eL~Ta~~~~lpvi~vV~NN~~-------------~~~i~~---------- 476 (563)
T PRK08527 426 AKLAV----PDKVVINFTGDGSIL--MNIQELMTAVEYKIPVINIILNNNF-------------LGMVRQ---------- 476 (563)
T ss_pred HHHhC----CCCcEEEEecCchhc--ccHHHHHHHHHhCCCeEEEEEECCc-------------chhHHH----------
Confidence 99985 488999999999997 7888999999999999999988885 222210
Q ss_pred HHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcc-cCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEE
Q 004946 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM-IGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLV 362 (722)
Q Consensus 284 ~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI 362 (722)
+++.. + +.... ..++ ..++...++++||+++... ++.++|.++|+++.+ .++|++|
T Consensus 477 ~~~~~---~------~~~~~---------~~~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~al~~a~~--~~~p~li 533 (563)
T PRK08527 477 WQTFF---Y------EERYS---------ETDLSTQPDFVKLAESFGGIGFRV---TTKEEFDKALKEALE--SDKVALI 533 (563)
T ss_pred HHHhh---c------CCcee---------eccCCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHHHHHh--CCCCEEE
Confidence 00000 0 00000 0000 1135578999999998865 789999999999987 5899999
Q ss_pred EEEeeccC
Q 004946 363 HVVTEENR 370 (722)
Q Consensus 363 ~v~T~kG~ 370 (722)
||.+.+..
T Consensus 534 eV~v~~~~ 541 (563)
T PRK08527 534 DVKIDRFE 541 (563)
T ss_pred EEEECCcc
Confidence 99997644
No 116
>PRK08617 acetolactate synthase; Reviewed
Probab=99.36 E-value=8.9e-12 Score=144.71 Aligned_cols=128 Identities=16% Similarity=0.196 Sum_probs=95.8
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchh
Q 004946 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (722)
Q Consensus 190 ~~G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (722)
+.|++|+++|+|+|+++|. ++++|||++|||+|+ |...+|.+|..+++|+++||.||+. +|
T Consensus 412 ~~g~mG~~lpaaiGa~la~----p~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~~vV~NN~~-------------~~ 472 (552)
T PRK08617 412 GMQTLGVALPWAIAAALVR----PGKKVVSVSGDGGFL--FSAMELETAVRLKLNIVHIIWNDGH-------------YN 472 (552)
T ss_pred ccccccccccHHHhhHhhc----CCCcEEEEEechHHh--hhHHHHHHHHHhCCCeEEEEEECCc-------------cc
Confidence 4578999999999999984 589999999999997 8999999999999999988888875 22
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHH
Q 004946 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (722)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~ 349 (722)
.+.. . + ...| ....+. ++-.+++..++++||.++..+ ++.++|.++|+
T Consensus 473 ~~~~-~---~-~~~~----------~~~~~~--------------~~~~~d~~~lA~a~G~~~~~v---~~~~eL~~al~ 520 (552)
T PRK08617 473 MVEF-Q---E-EMKY----------GRSSGV--------------DFGPVDFVKYAESFGAKGLRV---TSPDELEPVLR 520 (552)
T ss_pred hHHH-H---H-Hhhc----------CCcccC--------------CCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHH
Confidence 2210 0 0 0000 000000 011245678999999999866 89999999999
Q ss_pred HHHhcCCCCCEEEEEEeeccC
Q 004946 350 EVASLGSMGPVLVHVVTEENR 370 (722)
Q Consensus 350 ~a~~~~~~~P~lI~v~T~kG~ 370 (722)
++.+ .++|++|++.+.+..
T Consensus 521 ~a~~--~~~p~liev~~~~~~ 539 (552)
T PRK08617 521 EALA--TDGPVVIDIPVDYSD 539 (552)
T ss_pred HHHh--CCCcEEEEEEecccc
Confidence 9886 588999999997544
No 117
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=99.36 E-value=9.3e-12 Score=146.16 Aligned_cols=180 Identities=16% Similarity=0.193 Sum_probs=118.9
Q ss_pred chHHHHHHHHhhccCCCCcEEEecCC-chHHHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004946 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (722)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G 203 (722)
+..-.+...|...++ +++.++.|.| |..|+..++.-.. | .+.+...+.|++|+++|+|+|
T Consensus 398 l~~~~~~~~l~~~l~-~~~ivv~d~G~~~~~~~~~~~~~~---------------p---~~~~~~~~~G~mG~glpaaiG 458 (612)
T PRK07789 398 LAPQYVIERLGEIAG-PDAIYVAGVGQHQMWAAQFIDYEK---------------P---RTWLNSGGLGTMGYAVPAAMG 458 (612)
T ss_pred cCHHHHHHHHHhhCC-CCeEEEECCcHHHHHHHHhcccCC---------------C---CeEEcCCCcccccchhhhHHh
Confidence 455556666655443 5677788998 5556654433110 0 011111245899999999999
Q ss_pred HHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhH
Q 004946 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (722)
Q Consensus 204 ~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (722)
+++|. ++++|||++|||+|+ |+..+|.+|.++++|+++||.||+. +|.+..
T Consensus 459 a~la~----p~~~Vv~i~GDG~f~--m~~~eL~Ta~~~~lpv~ivV~NN~~-------------~g~i~~---------- 509 (612)
T PRK07789 459 AKVGR----PDKEVWAIDGDGCFQ--MTNQELATCAIEGIPIKVALINNGN-------------LGMVRQ---------- 509 (612)
T ss_pred hhccC----CCCcEEEEEcchhhh--ccHHHHHHHHHcCCCeEEEEEECCc-------------hHHHHH----------
Confidence 99984 589999999999996 8999999999999999999988885 232211
Q ss_pred HHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEEE
Q 004946 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVH 363 (722)
Q Consensus 284 ~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~ 363 (722)
++++...... .+.... ......+++..++++||+++..+ ++.++|.++|+++.+. .++|+||+
T Consensus 510 ~q~~~~~~~~----~~~~~~---------~~~~~~~d~~~lA~a~G~~~~~V---~~~~eL~~al~~a~~~-~~~p~lIe 572 (612)
T PRK07789 510 WQTLFYEERY----SNTDLH---------THSHRIPDFVKLAEAYGCVGLRC---EREEDVDAVIEKARAI-NDRPVVID 572 (612)
T ss_pred HHHHhhCCCc----ceeecC---------cCCCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHHHHHhc-CCCcEEEE
Confidence 0100000000 000000 00001145688999999999866 8899999999999873 27899999
Q ss_pred EEeecc
Q 004946 364 VVTEEN 369 (722)
Q Consensus 364 v~T~kG 369 (722)
|.+.+.
T Consensus 573 v~i~~~ 578 (612)
T PRK07789 573 FVVGKD 578 (612)
T ss_pred EEECCc
Confidence 999653
No 118
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.36 E-value=1.1e-11 Score=144.12 Aligned_cols=174 Identities=13% Similarity=0.186 Sum_probs=116.8
Q ss_pred chHHHHHHHHhhccCCCCcEEEecCC-chHHHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004946 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (722)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G 203 (722)
+....+...|..+++ +++.++.|.| |..|+..++.- +.+ .+....-+.|++|+++|+|+|
T Consensus 373 l~~~~~~~~l~~~l~-~d~iiv~d~g~~~~~~~~~~~~-----------------~~p-~~~~~~~~~gsmG~~lp~aiG 433 (570)
T PRK06725 373 LKPQHVINLVSELTN-GEAIVTTEVGQHQMWAAHFYKA-----------------KNP-RTFLTSGGLGTMGFGFPAAIG 433 (570)
T ss_pred cCHHHHHHHHHhhCC-CCcEEEeCCcHHHHHHHHhccc-----------------cCC-CeEEccCCcccccchhhHHHh
Confidence 445556666655543 4566778988 44455533321 100 011111245899999999999
Q ss_pred HHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhH
Q 004946 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (722)
Q Consensus 204 ~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (722)
+++|. ++++|||++|||+|+ |+..+|.+|..+++|+++||.||+.. +.+..
T Consensus 434 a~lA~----p~~~vv~i~GDG~f~--~~~~el~Ta~~~~lpi~~vV~NN~~~-------------~~~~~---------- 484 (570)
T PRK06725 434 AQLAK----EEELVICIAGDASFQ--MNIQELQTIAENNIPVKVFIINNKFL-------------GMVRQ---------- 484 (570)
T ss_pred hHhhc----CCCeEEEEEecchhh--ccHHHHHHHHHhCCCeEEEEEECCcc-------------HHHHH----------
Confidence 99984 589999999999996 88899999999999999999999862 22110
Q ss_pred HHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEEE
Q 004946 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVH 363 (722)
Q Consensus 284 ~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~ 363 (722)
+++.. .+... ...++-.++...++++||++...+ .+.++|.++++++.+ .++|++|+
T Consensus 485 ~q~~~---------~~~~~---------~~~~~~~~d~~~~a~a~G~~~~~v---~~~~~l~~al~~a~~--~~~p~lie 541 (570)
T PRK06725 485 WQEMF---------YENRL---------SESKIGSPDFVKVAEAYGVKGLRA---TNSTEAKQVMLEAFA--HEGPVVVD 541 (570)
T ss_pred HHHHh---------cCCcc---------ccCcCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHHHHHHh--CCCCEEEE
Confidence 00000 00000 000011245678999999999855 789999999999987 58999999
Q ss_pred EEeecc
Q 004946 364 VVTEEN 369 (722)
Q Consensus 364 v~T~kG 369 (722)
+.+.+.
T Consensus 542 v~id~~ 547 (570)
T PRK06725 542 FCVEEG 547 (570)
T ss_pred EEeCCc
Confidence 999643
No 119
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.36 E-value=1e-11 Score=144.83 Aligned_cols=129 Identities=20% Similarity=0.247 Sum_probs=95.8
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchh
Q 004946 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (722)
Q Consensus 190 ~~G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (722)
+.|.+|+++|+|+|+++|. ++++|||++|||+|+ |..++|++|..+++|+++||.||+. ++
T Consensus 419 ~~g~mG~~lp~aiGa~la~----p~~~vv~i~GDG~f~--~~~~eL~ta~~~~lpv~~vV~NN~~-------------~~ 479 (574)
T PRK06882 419 GAGTMGFGLPAAIGVKFAH----PEATVVCVTGDGSIQ--MNIQELSTAKQYDIPVVIVSLNNRF-------------LG 479 (574)
T ss_pred CcccccchhHHHHHHHhhc----CCCcEEEEEcchhhh--ccHHHHHHHHHhCCCeEEEEEECch-------------hH
Confidence 4588999999999999985 488999999999996 8889999999999999999999985 22
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcc--cCCChhhhHhhcCceEEeecCCCCHHHHHHH
Q 004946 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM--IGPQGSTLFEELGLYYIGPVDGHNIEDLISV 347 (722)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~lfea~G~~~~~~vdGhd~~~l~~a 347 (722)
.+.. +++.... + . +.... -.++...++++||+++..+ ++.++|.++
T Consensus 480 ~i~~----------~q~~~~~--------~-~----------~~~~~~~~~~d~~~la~a~G~~~~~v---~~~~eL~~a 527 (574)
T PRK06882 480 MVKQ----------WQDLIYS--------G-R----------HSQVYMNSLPDFAKLAEAYGHVGIQI---DTPDELEEK 527 (574)
T ss_pred HHHH----------HHHHhcC--------C-c----------ccccCCCCCCCHHHHHHHCCCeEEEe---CCHHHHHHH
Confidence 2210 0000000 0 0 00000 0134578999999999865 789999999
Q ss_pred HHHHHhcCCCCCEEEEEEeeccC
Q 004946 348 LQEVASLGSMGPVLVHVVTEENR 370 (722)
Q Consensus 348 l~~a~~~~~~~P~lI~v~T~kG~ 370 (722)
|+++.+. .++|++|||.+.+..
T Consensus 528 l~~a~~~-~~~p~liev~i~~~~ 549 (574)
T PRK06882 528 LTQAFSI-KDKLVFVDVNVDETE 549 (574)
T ss_pred HHHHHhc-CCCcEEEEEEecCcc
Confidence 9998873 378999999996543
No 120
>PRK07064 hypothetical protein; Provisional
Probab=99.35 E-value=7.6e-12 Score=145.05 Aligned_cols=130 Identities=22% Similarity=0.270 Sum_probs=96.5
Q ss_pred CCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhh
Q 004946 192 GHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINAL 271 (722)
Q Consensus 192 G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l 271 (722)
|++|+++|+|+|+++|. ++++||+++|||+|+ |...+|.+|..+++|+++||.||+. .|.+
T Consensus 405 g~mG~~lpaAiGa~lA~----p~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~-------------yg~~ 465 (544)
T PRK07064 405 GGIGQGLAMAIGAALAG----PGRKTVGLVGDGGLM--LNLGELATAVQENANMVIVLMNDGG-------------YGVI 465 (544)
T ss_pred CccccccchhhhhhhhC----cCCcEEEEEcchHhh--hhHHHHHHHHHhCCCeEEEEEeCCh-------------hHHH
Confidence 88999999999999984 589999999999996 8889999999999999999988885 2322
Q ss_pred hhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHH
Q 004946 272 SSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEV 351 (722)
Q Consensus 272 ~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a 351 (722)
.. +++.+. +.. ...-++-.+++..++++||+++..+ .+.++|.++++++
T Consensus 466 ~~----------~~~~~~---------~~~---------~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~eL~~al~~a 514 (544)
T PRK07064 466 RN----------IQDAQY---------GGR---------RYYVELHTPDFALLAASLGLPHWRV---TSADDFEAVLREA 514 (544)
T ss_pred HH----------HHHHhc---------CCc---------cccccCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHHHHH
Confidence 11 010000 000 0000111245678999999999865 7899999999999
Q ss_pred HhcCCCCCEEEEEEeeccCCCc
Q 004946 352 ASLGSMGPVLVHVVTEENRRAE 373 (722)
Q Consensus 352 ~~~~~~~P~lI~v~T~kG~G~~ 373 (722)
.+ .++|++|+|.+.....++
T Consensus 515 ~~--~~~p~lIeV~~~~~~~~~ 534 (544)
T PRK07064 515 LA--KEGPVLVEVDMLSIGPFA 534 (544)
T ss_pred Hc--CCCCEEEEEEcccccccC
Confidence 87 589999999986433333
No 121
>PLN02470 acetolactate synthase
Probab=99.35 E-value=1.1e-11 Score=144.91 Aligned_cols=137 Identities=15% Similarity=0.192 Sum_probs=96.4
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchh
Q 004946 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (722)
Q Consensus 190 ~~G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (722)
+.|++|+++|+|+|+++|. ++++|||++|||+|+ |+..+|.+|..+++|+++||.||+. +|
T Consensus 424 ~~g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~--m~~~eL~Ta~~~~l~v~ivV~NN~~-------------yg 484 (585)
T PLN02470 424 GLGAMGFGLPAAIGAAAAN----PDAIVVDIDGDGSFI--MNIQELATIHVENLPVKIMVLNNQH-------------LG 484 (585)
T ss_pred ccccccchHHHHHHHHHhC----CCCcEEEEEccchhh--ccHHHHHHHHHhCCCeEEEEEeCCc-------------ch
Confidence 4589999999999999984 589999999999996 8899999999999999998888875 23
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHH
Q 004946 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (722)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~ 349 (722)
.+.. +++............+.+. ......++...++++||+++..+ ++.++|.++|+
T Consensus 485 ~i~~----------~~~~~~~~~~~~~~~~~~~----------~~~~~~~d~~~iA~a~G~~~~~v---~~~~el~~al~ 541 (585)
T PLN02470 485 MVVQ----------WEDRFYKANRAHTYLGDPD----------AEAEIFPDFLKFAEGCKIPAARV---TRKSDLREAIQ 541 (585)
T ss_pred HHHH----------HHHHHhCCceeeeecCccc----------cccCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHH
Confidence 2211 0000000000000000000 00000145678999999998866 78999999999
Q ss_pred HHHhcCCCCCEEEEEEeeccC
Q 004946 350 EVASLGSMGPVLVHVVTEENR 370 (722)
Q Consensus 350 ~a~~~~~~~P~lI~v~T~kG~ 370 (722)
++.+ .++|.+|||.+.+..
T Consensus 542 ~a~~--~~~p~lieV~i~~~~ 560 (585)
T PLN02470 542 KMLD--TPGPYLLDVIVPHQE 560 (585)
T ss_pred HHHh--CCCCEEEEEEeCCcc
Confidence 9987 589999999996544
No 122
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=99.35 E-value=1.3e-11 Score=143.55 Aligned_cols=173 Identities=14% Similarity=0.138 Sum_probs=115.3
Q ss_pred chHHHHHHHHhhccCCCCcEEEecCC-chHHHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004946 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (722)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G 203 (722)
+....+...|...++ .++.|+.|.| |+.|.+.++.-+. .. + +...+.|++|+++|+|+|
T Consensus 367 ~~~~~~~~~l~~~l~-~~~ii~~d~g~~~~~~~~~~~~~~--------~~---~--------~~~~~~g~mG~glpaaiG 426 (557)
T PRK08199 367 VQLGEVMAWLRERLP-ADAIITNGAGNYATWLHRFFRFRR--------YR---T--------QLAPTSGSMGYGLPAAIA 426 (557)
T ss_pred cCHHHHHHHHHHhCC-CCeEEEECChHHHHHHHHhcCcCC--------CC---e--------EECCCCccccchHHHHHH
Confidence 444445555544443 4566777888 5556664433110 00 0 001134899999999999
Q ss_pred HHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhH
Q 004946 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (722)
Q Consensus 204 ~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (722)
++++. ++++|||++|||+|+ |..++|.+|+.+++|+++||.||+. ++.+...
T Consensus 427 a~la~----p~~~vv~i~GDGsf~--~~~~el~ta~~~~l~i~~vv~nN~~-------------~~~~~~~--------- 478 (557)
T PRK08199 427 AKLLF----PERTVVAFAGDGCFL--MNGQELATAVQYGLPIIVIVVNNGM-------------YGTIRMH--------- 478 (557)
T ss_pred HHHhC----CCCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCCc-------------chHHHHH---------
Confidence 99884 589999999999997 8889999999999999999999985 2322110
Q ss_pred HHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEEE
Q 004946 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVH 363 (722)
Q Consensus 284 ~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~ 363 (722)
++.. .+.... ..++-.++...++++||+++... .+.++|.++++++.+ .++|++|+
T Consensus 479 -~~~~---------~~~~~~---------~~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~al~~a~~--~~gp~li~ 534 (557)
T PRK08199 479 -QERE---------YPGRVS---------GTDLTNPDFAALARAYGGHGETV---ERTEDFAPAFERALA--SGKPALIE 534 (557)
T ss_pred -HHHh---------cCCccc---------cccCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHHHHHHh--CCCCEEEE
Confidence 0000 000000 00111235678999999998854 589999999999987 58999999
Q ss_pred EEeecc
Q 004946 364 VVTEEN 369 (722)
Q Consensus 364 v~T~kG 369 (722)
|.|.+.
T Consensus 535 v~~~~~ 540 (557)
T PRK08199 535 IRIDPE 540 (557)
T ss_pred EEeCHH
Confidence 999654
No 123
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=99.35 E-value=3.9e-11 Score=139.86 Aligned_cols=175 Identities=13% Similarity=0.050 Sum_probs=115.5
Q ss_pred chHHHHHHHHhhccCCCCcEEEe-cCCchH-HHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHH
Q 004946 125 LAAVELTVALHHVFHAPVDKILW-DVGEQT-YAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGL 202 (722)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~-d~GH~~-y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~ 202 (722)
+....+...|...+..|.|.++. |.|+.. ++..++.-+ .|. +.....+.|++|+++|+|+
T Consensus 373 l~~~~~~~~l~~~l~~~~d~iv~~~~~~~~~~~~~~~~~~---------------~p~---~~~~~~~~gsmG~glpaai 434 (569)
T PRK09259 373 MNFYNALGAIRDVLKENPDIYLVNEGANTLDLARNIIDMY---------------KPR---HRLDCGTWGVMGIGMGYAI 434 (569)
T ss_pred cCHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHhcccC---------------CCC---ceEeCCCCccccccHHHHH
Confidence 44455666676666545566655 555433 333222111 011 1111124589999999999
Q ss_pred HHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhh
Q 004946 203 GMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSK 282 (722)
Q Consensus 203 G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~ 282 (722)
|+++|. +++|||++|||+|+ |+.++|.+|.++++|+++||.||+.. ....
T Consensus 435 Ga~la~-----~~~vv~i~GDG~f~--m~~~EL~Ta~r~~lpi~~vV~NN~~~------------~~~~----------- 484 (569)
T PRK09259 435 AAAVET-----GKPVVAIEGDSAFG--FSGMEVETICRYNLPVTVVIFNNGGI------------YRGD----------- 484 (569)
T ss_pred HHHhcC-----CCcEEEEecCcccc--ccHHHHHHHHHcCCCEEEEEEeChhH------------HHHH-----------
Confidence 999982 78899999999997 89999999999999999999999841 0000
Q ss_pred HHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcc-cCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCEE
Q 004946 283 SFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM-IGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVL 361 (722)
Q Consensus 283 ~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~l 361 (722)
++ .... +... ...++ -.+++..++++||+++..+ .+.++|.++++++.+ .++|++
T Consensus 485 --~~-~~~~-------~~~~---------~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~el~~al~~a~~--~~~p~l 540 (569)
T PRK09259 485 --DV-NLSG-------AGDP---------SPTVLVHHARYDKMMEAFGGVGYNV---TTPDELRHALTEAIA--SGKPTL 540 (569)
T ss_pred --HH-Hhhc-------CCCc---------cccccCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHHHHHh--CCCCEE
Confidence 00 0000 0000 00001 1245678999999998866 789999999999987 589999
Q ss_pred EEEEeeccCC
Q 004946 362 VHVVTEENRR 371 (722)
Q Consensus 362 I~v~T~kG~G 371 (722)
|+|.+.+..+
T Consensus 541 Iev~id~~~~ 550 (569)
T PRK09259 541 INVVIDPAAG 550 (569)
T ss_pred EEEEECCCCC
Confidence 9999976554
No 124
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.35 E-value=9.2e-12 Score=145.19 Aligned_cols=176 Identities=15% Similarity=0.170 Sum_probs=116.5
Q ss_pred chHHHHHHHHhhccCCCCcEEEecCC-chHHHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004946 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (722)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G 203 (722)
+....+...|...++ .+..|+.|.| |+.|+..++.-++. +++ ...-+.|++|+++|+|+|
T Consensus 374 l~~~~~~~~l~~~l~-~~~iv~~d~g~~~~~~~~~~~~~~p-----~~~-------------~~~~~~gsmG~glpaAiG 434 (574)
T PRK06466 374 IKPQQVVETLYEVTN-GDAYVTSDVGQHQMFAAQYYKFNKP-----NRW-------------INSGGLGTMGFGLPAAMG 434 (574)
T ss_pred cCHHHHHHHHHhhCC-CCeEEEECCcHHHHHHHHhccccCC-----CcE-------------EcCCCcchhhchHHHHHH
Confidence 444555555654432 2345557888 55666544331110 011 111244899999999999
Q ss_pred HHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhH
Q 004946 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (722)
Q Consensus 204 ~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (722)
+++|. ++++|||++|||+|+ |+.++|.+|.++++|+++||.||+. +|.+..
T Consensus 435 a~la~----p~r~Vv~i~GDG~f~--m~~~eL~Ta~r~~lpv~ivV~NN~~-------------y~~i~~---------- 485 (574)
T PRK06466 435 VKLAF----PDQDVACVTGEGSIQ--MNIQELSTCLQYGLPVKIINLNNGA-------------LGMVRQ---------- 485 (574)
T ss_pred HHHhC----CCCeEEEEEcchhhh--ccHHHHHHHHHhCCCeEEEEEeCCc-------------cHHHHH----------
Confidence 99985 589999999999997 8899999999999999999988885 232211
Q ss_pred HHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcc-cCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEE
Q 004946 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM-IGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLV 362 (722)
Q Consensus 284 ~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI 362 (722)
+++.... + ... ...+ -.+++..++++||.++..+ .+.++|.++|+++.+. .++|++|
T Consensus 486 ~q~~~~~--------~-~~~---------~~~~~~~~d~~~lA~a~G~~~~~v---~~~~el~~al~~a~~~-~~~p~lI 543 (574)
T PRK06466 486 WQDMQYE--------G-RHS---------HSYMESLPDFVKLAEAYGHVGIRI---TDLKDLKPKLEEAFAM-KDRLVFI 543 (574)
T ss_pred HHHHhcC--------C-cee---------ecCCCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHHHHHhc-CCCcEEE
Confidence 0100000 0 000 0000 0145678999999999866 7899999999998762 2789999
Q ss_pred EEEeeccC
Q 004946 363 HVVTEENR 370 (722)
Q Consensus 363 ~v~T~kG~ 370 (722)
++.+.+..
T Consensus 544 ev~i~~~~ 551 (574)
T PRK06466 544 DIYVDRSE 551 (574)
T ss_pred EEEeCCcc
Confidence 99997543
No 125
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=99.35 E-value=3.2e-11 Score=140.15 Aligned_cols=173 Identities=12% Similarity=0.089 Sum_probs=114.5
Q ss_pred chHHHHHHHHhhccCCCCcEEEe-cCC-chHHHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHH
Q 004946 125 LAAVELTVALHHVFHAPVDKILW-DVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGL 202 (722)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~-d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~ 202 (722)
+....+...|...+..++|.|+. |.| |+.|+..++.-++ |. +....-+.|++|+++|+|+
T Consensus 366 l~~~~~~~~l~~~l~~~~~~ivv~d~~~~~~~~~~~~~~~~---------------p~---~~~~~~~~gsmG~~lpaai 427 (554)
T TIGR03254 366 MNYHGALEAIRDVLKDNPDIYLVNEGANTLDLARNVIDMYK---------------PR---HRLDVGTWGVMGIGMGYAI 427 (554)
T ss_pred cCHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHhcccCC---------------CC---cEeeCCCCCcCCchHHHHH
Confidence 55555666676666544566665 555 4335543322110 10 1111124489999999999
Q ss_pred HHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhh
Q 004946 203 GMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSK 282 (722)
Q Consensus 203 G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~ 282 (722)
|+++| ++++||+++|||+|+ |+.++|.+|+++++|+++||.||+... .+
T Consensus 428 Gaala-----~~~~vv~i~GDGsf~--m~~~EL~Ta~r~~l~v~~vV~NN~~~~-----------~~------------- 476 (554)
T TIGR03254 428 AAAVE-----TGKPVVALEGDSAFG--FSGMEVETICRYNLPVCVVIFNNGGIY-----------RG------------- 476 (554)
T ss_pred HHHhc-----CCCcEEEEEcCchhc--ccHHHHHHHHHcCCCEEEEEEeChhhh-----------hh-------------
Confidence 99997 278999999999997 899999999999999999999998410 00
Q ss_pred HHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcc-cCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCEE
Q 004946 283 SFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM-IGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVL 361 (722)
Q Consensus 283 ~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~l 361 (722)
++...... ...+ .++ -.+++..++++||.++..+ .+.++|.++|+++.+ .++|++
T Consensus 477 --~~~~~~~~---~~~~--------------~~~~~~~df~~la~a~G~~~~~v---~~~~el~~al~~a~~--~~~p~l 532 (554)
T TIGR03254 477 --DDVNVVGA---DPAP--------------TVLVHGARYDKMMKAFGGVGYNV---TTPDELKAALNEALA--SGKPTL 532 (554)
T ss_pred --hhhhhcCC---CCCc--------------cccCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHHHHHHh--CCCCEE
Confidence 00000000 0000 001 1245678999999998866 789999999999876 589999
Q ss_pred EEEEeeccC
Q 004946 362 VHVVTEENR 370 (722)
Q Consensus 362 I~v~T~kG~ 370 (722)
|+|.+.+..
T Consensus 533 Iev~id~~~ 541 (554)
T TIGR03254 533 INAVIDPSA 541 (554)
T ss_pred EEEEECCCc
Confidence 999996543
No 126
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=99.34 E-value=1.4e-11 Score=143.85 Aligned_cols=174 Identities=18% Similarity=0.233 Sum_probs=116.5
Q ss_pred chHHHHHHHHhhccCCCCcEEEecCC-chHHHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004946 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (722)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G 203 (722)
+....+...|...+ |++.++.|.| |+.|+..++.- .|. +.....+.|++|+++|+|+|
T Consensus 383 l~~~~~~~~l~~~~--~d~iv~~d~G~~~~~~~~~~~~----------------~~~---~~~~~~~~g~mG~glpaaiG 441 (585)
T CHL00099 383 LSPQEVINEISQLA--PDAYFTTDVGQHQMWAAQFLKC----------------KPR---KWLSSAGLGTMGYGLPAAIG 441 (585)
T ss_pred cCHHHHHHHHHhhC--CCeEEEECCcHHHHHHHHhccC----------------CCC---cEEcCccccchhhhHHHHHH
Confidence 44445555554432 4677888999 44565533321 011 11112345899999999999
Q ss_pred HHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhH
Q 004946 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (722)
Q Consensus 204 ~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (722)
+++|. ++++|||++|||+|+ |+..+|.+|.++++|+++||.||+. +|.+..
T Consensus 442 aala~----p~~~vv~i~GDG~f~--m~~~eL~Ta~~~~l~~~~vV~NN~~-------------y~~i~~---------- 492 (585)
T CHL00099 442 AQIAH----PNELVICISGDASFQ--MNLQELGTIAQYNLPIKIIIINNKW-------------QGMVRQ---------- 492 (585)
T ss_pred HHHhC----CCCeEEEEEcchhhh--hhHHHHHHHHHhCCCeEEEEEECCc-------------chHHHH----------
Confidence 99985 489999999999996 8999999999999999999999985 232210
Q ss_pred HHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEEE
Q 004946 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVH 363 (722)
Q Consensus 284 ~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~ 363 (722)
.++.. .+..... .+ ...-.++...++++||+++... .+.++|.++|+++.+ .++|.+||
T Consensus 493 ~q~~~---------~~~~~~~-----~~--~~~~~~d~~~la~a~G~~~~~v---~~~~el~~al~~a~~--~~~p~lie 551 (585)
T CHL00099 493 WQQAF---------YGERYSH-----SN--MEEGAPDFVKLAEAYGIKGLRI---KSRKDLKSSLKEALD--YDGPVLID 551 (585)
T ss_pred HHHHh---------cCCCccc-----cc--CCCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHHHHHHh--CCCCEEEE
Confidence 00000 0000000 00 0000135678999999999855 789999999999987 58999999
Q ss_pred EEeecc
Q 004946 364 VVTEEN 369 (722)
Q Consensus 364 v~T~kG 369 (722)
|.|...
T Consensus 552 v~v~~~ 557 (585)
T CHL00099 552 CQVIED 557 (585)
T ss_pred EEECCC
Confidence 999743
No 127
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.34 E-value=1.4e-11 Score=143.32 Aligned_cols=172 Identities=15% Similarity=0.207 Sum_probs=116.1
Q ss_pred chHHHHHHHHhhccCCCCcEEEecCCc-hHHHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004946 125 LAAVELTVALHHVFHAPVDKILWDVGE-QTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (722)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~GH-~~y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G 203 (722)
+....+...|...+ |++.++.|.|. ..|...++.-++ |. +....-+.|++|+++|+|+|
T Consensus 366 l~~~~~~~~l~~~~--p~~iiv~d~g~~~~~~~~~~~~~~---------------~~---~~~~~~~~g~mG~glpaaiG 425 (561)
T PRK06048 366 IKPQYVIEQIYELC--PDAIIVTEVGQHQMWAAQYFKYKY---------------PR---TFITSGGLGTMGYGFPAAIG 425 (561)
T ss_pred cCHHHHHHHHHhhC--CCcEEEEcCcHHHHHHHHhcccCC---------------CC---eEEeCCCccccccHHHHHHH
Confidence 44445555565443 56778889884 445443332110 00 11111244899999999999
Q ss_pred HHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhH
Q 004946 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (722)
Q Consensus 204 ~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (722)
+++|. ++++|||++|||+|+ |+..+|.+|.++++|+++||.||+. ++.+..
T Consensus 426 a~la~----p~~~Vv~i~GDG~f~--m~~~eL~Ta~~~~l~i~~vV~NN~~-------------y~~i~~---------- 476 (561)
T PRK06048 426 AKVGK----PDKTVIDIAGDGSFQ--MNSQELATAVQNDIPVIVAILNNGY-------------LGMVRQ---------- 476 (561)
T ss_pred HHHhC----CCCcEEEEEeCchhh--ccHHHHHHHHHcCCCeEEEEEECCc-------------cHHHHH----------
Confidence 99984 589999999999996 8899999999999999999988875 232210
Q ss_pred HHHHHHHHhhhhhhcCccHHHHHHHHHHHh-hcc-cCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCEE
Q 004946 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYA-RGM-IGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVL 361 (722)
Q Consensus 284 ~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~-~~~-~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~l 361 (722)
+++... +. .+. .++ -.++...++++||+++..+ .+.++|.++|+++.+ .++|++
T Consensus 477 ~~~~~~---------~~----------~~~~~~~~~~~d~~~lA~a~G~~~~~v---~t~~el~~al~~a~~--~~~p~l 532 (561)
T PRK06048 477 WQELFY---------DK----------RYSHTCIKGSVDFVKLAEAYGALGLRV---EKPSEVRPAIEEAVA--SDRPVV 532 (561)
T ss_pred HHHHHc---------CC----------cccccCCCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHHHHHh--CCCCEE
Confidence 000000 00 000 001 1245678999999999866 789999999999987 589999
Q ss_pred EEEEeecc
Q 004946 362 VHVVTEEN 369 (722)
Q Consensus 362 I~v~T~kG 369 (722)
|++.+.+.
T Consensus 533 iev~~~~~ 540 (561)
T PRK06048 533 IDFIVECE 540 (561)
T ss_pred EEEEecCc
Confidence 99999654
No 128
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=99.34 E-value=1.6e-11 Score=142.87 Aligned_cols=175 Identities=19% Similarity=0.183 Sum_probs=115.7
Q ss_pred chHHHHHHHHhhccCCCCcEEEecCC-chHHHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004946 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (722)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G 203 (722)
+....+...|...++ +++.|+.|+| |+.|....+.-++ |. +....-+.|++|+++|+|+|
T Consensus 370 l~~~~v~~~l~~~l~-~~~iv~~D~G~~~~~~~~~~~~~~---------------~~---~~~~~~~~g~mG~~lpaaiG 430 (564)
T PRK08155 370 LSHYGLINAVAACVD-DNAIITTDVGQHQMWTAQAYPLNR---------------PR---QWLTSGGLGTMGFGLPAAIG 430 (564)
T ss_pred cCHHHHHHHHHHhCC-CCeEEEECCchHHHHHHHhccccC---------------CC---eEEeCCCcccccchhHHHHH
Confidence 444455555655543 4567778999 5555543322110 00 11111245899999999999
Q ss_pred HHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhH
Q 004946 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (722)
Q Consensus 204 ~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (722)
+++|. ++++|||++|||+|+ |...+|.+|.++++|+++||.||+.. |.+..
T Consensus 431 a~la~----~~~~vv~i~GDGsf~--~~~~eL~ta~~~~lpvi~vV~NN~~~-------------g~~~~---------- 481 (564)
T PRK08155 431 AALAN----PERKVLCFSGDGSLM--MNIQEMATAAENQLDVKIILMNNEAL-------------GLVHQ---------- 481 (564)
T ss_pred HHHhC----CCCcEEEEEccchhh--ccHHHHHHHHHhCCCeEEEEEeCCcc-------------cccHH----------
Confidence 99985 588999999999997 77888999999999999999888841 21110
Q ss_pred HHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcc-cCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEE
Q 004946 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM-IGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLV 362 (722)
Q Consensus 284 ~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI 362 (722)
.++.. ..... .+ ..+ -.++...++++||++++.+ .+.++|.++|+++.+ .++|++|
T Consensus 482 ~q~~~-~~~~~---~~--------------~~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~al~~a~~--~~~p~lI 538 (564)
T PRK08155 482 QQSLF-YGQRV---FA--------------ATYPGKINFMQIAAGFGLETCDL---NNEADPQAALQEAIN--RPGPALI 538 (564)
T ss_pred HHHHh-cCCCe---ee--------------ccCCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHHHHHHh--CCCCEEE
Confidence 00000 00000 00 000 0134578999999999865 689999999999987 4899999
Q ss_pred EEEeeccC
Q 004946 363 HVVTEENR 370 (722)
Q Consensus 363 ~v~T~kG~ 370 (722)
+|.+....
T Consensus 539 eV~~~~~~ 546 (564)
T PRK08155 539 HVRIDAEE 546 (564)
T ss_pred EEEeCCCc
Confidence 99996433
No 129
>PRK07524 hypothetical protein; Provisional
Probab=99.33 E-value=1e-11 Score=143.70 Aligned_cols=129 Identities=18% Similarity=0.218 Sum_probs=96.6
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchh
Q 004946 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (722)
Q Consensus 190 ~~G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (722)
+.|++|+++|+|+|+++|. ++++|||++|||+|+ |..++|.+|..+++|+++||.||+. +|
T Consensus 405 ~~g~mG~~lp~aiGa~lA~----p~~~vv~i~GDG~f~--~~~~el~ta~~~~lpi~~vV~NN~~-------------~g 465 (535)
T PRK07524 405 GYGTLGYGLPAAIGAALGA----PERPVVCLVGDGGLQ--FTLPELASAVEADLPLIVLLWNNDG-------------YG 465 (535)
T ss_pred CcccccchHHHHHHHHHhC----CCCcEEEEEcchHHh--hhHHHHHHHHHhCCCeEEEEEECCc-------------hH
Confidence 4589999999999999984 589999999999996 8888999999999999999999875 23
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHH
Q 004946 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (722)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~ 349 (722)
.+.. +++.. +. ...+ .+.-.++...++++||+++... .+.++|.++++
T Consensus 466 ~i~~----------~~~~~----~~-~~~~--------------~~~~~~d~~~~A~a~G~~~~~v---~~~~el~~al~ 513 (535)
T PRK07524 466 EIRR----------YMVAR----DI-EPVG--------------VDPYTPDFIALARAFGCAAERV---ADLEQLQAALR 513 (535)
T ss_pred HHHH----------HHHHh----cC-Cccc--------------cCCCCCCHHHHHHHCCCcEEEe---CCHHHHHHHHH
Confidence 2211 00000 00 0000 0111245678999999999855 58999999999
Q ss_pred HHHhcCCCCCEEEEEEeeccCC
Q 004946 350 EVASLGSMGPVLVHVVTEENRR 371 (722)
Q Consensus 350 ~a~~~~~~~P~lI~v~T~kG~G 371 (722)
++.+ .++|++|||++.+-.+
T Consensus 514 ~a~~--~~~p~liev~~~~~~~ 533 (535)
T PRK07524 514 AAFA--RPGPTLIEVDQACWFA 533 (535)
T ss_pred HHHh--CCCCEEEEEECCcccc
Confidence 9987 5899999999875443
No 130
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=99.33 E-value=2.1e-11 Score=142.06 Aligned_cols=129 Identities=14% Similarity=0.190 Sum_probs=95.7
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchh
Q 004946 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (722)
Q Consensus 190 ~~G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (722)
+.|++|+++|+|+|+++|. ++++||+++|||+|+ |...+|++|..++.|+++||.||+. .|
T Consensus 422 ~~g~mG~glpaAiGaala~----p~~~vv~i~GDGsf~--m~~~eL~ta~r~~lpi~ivV~NN~~-------------~~ 482 (571)
T PRK07710 422 GLGTMGFGLPAAIGAQLAK----PDETVVAIVGDGGFQ--MTLQELSVIKELSLPVKVVILNNEA-------------LG 482 (571)
T ss_pred CcccccchHHHHHHHHHhC----CCCcEEEEEcchHHh--hhHHHHHHHHHhCCCeEEEEEECch-------------HH
Confidence 4589999999999999984 589999999999997 8888999999999999999988885 23
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcc-cCCChhhhHhhcCceEEeecCCCCHHHHHHHH
Q 004946 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM-IGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (722)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al 348 (722)
.+.. +++. . + +.... ...+ -.++...++++||+++..+ ++.++|.+++
T Consensus 483 ~i~~----------~~~~--~-~------~~~~~---------~~~~~~~~d~~~~A~a~G~~~~~v---~~~~el~~al 531 (571)
T PRK07710 483 MVRQ----------WQEE--F-Y------NQRYS---------HSLLSCQPDFVKLAEAYGIKGVRI---DDELEAKEQL 531 (571)
T ss_pred HHHH----------HHHH--H-h------CCcce---------eccCCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHH
Confidence 2210 0000 0 0 00000 0000 0245678999999999866 7899999999
Q ss_pred HHHHhcCCCCCEEEEEEeeccC
Q 004946 349 QEVASLGSMGPVLVHVVTEENR 370 (722)
Q Consensus 349 ~~a~~~~~~~P~lI~v~T~kG~ 370 (722)
+++.+ .++|++|+|.|....
T Consensus 532 ~~a~~--~~~p~lieV~vd~~~ 551 (571)
T PRK07710 532 QHAIE--LQEPVVIDCRVLQSE 551 (571)
T ss_pred HHHHh--CCCCEEEEEEecCcc
Confidence 99987 589999999997544
No 131
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=99.32 E-value=1.3e-11 Score=143.44 Aligned_cols=129 Identities=22% Similarity=0.267 Sum_probs=95.2
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchh
Q 004946 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (722)
Q Consensus 190 ~~G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (722)
+.|++|+++|+|+|+++|. ++++|||++|||+|+ |...+|.+|.++++|+++||.||+. ++
T Consensus 410 ~~g~mG~~l~aaiGa~la~----~~~~vv~~~GDG~f~--~~~~eL~ta~~~~l~~~~vv~NN~~-------------~~ 470 (558)
T TIGR00118 410 GLGTMGFGLPAAIGAKVAK----PESTVICITGDGSFQ--MNLQELSTAVQYDIPVKILILNNRY-------------LG 470 (558)
T ss_pred ccccccchhhHHHhhhhhC----CCCcEEEEEcchHHh--ccHHHHHHHHHhCCCeEEEEEeCCc-------------hH
Confidence 4588999999999999884 588999999999997 7778999999999999999999986 22
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhccc-CCChhhhHhhcCceEEeecCCCCHHHHHHHH
Q 004946 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMI-GPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (722)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~lfea~G~~~~~~vdGhd~~~l~~al 348 (722)
.+.. .++... +.... ..... .++...++++||+++..+ ++.++|.+++
T Consensus 471 ~~~~----------~q~~~~---------~~~~~---------~~~~~~~~d~~~~a~a~G~~~~~v---~~~~~l~~al 519 (558)
T TIGR00118 471 MVRQ----------WQELFY---------EERYS---------HTHMGSLPDFVKLAEAYGIKGIRI---EKPEELDEKL 519 (558)
T ss_pred HHHH----------HHHHhc---------CCcee---------eccCCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHH
Confidence 2210 000000 00000 00000 245678999999999855 6789999999
Q ss_pred HHHHhcCCCCCEEEEEEeeccC
Q 004946 349 QEVASLGSMGPVLVHVVTEENR 370 (722)
Q Consensus 349 ~~a~~~~~~~P~lI~v~T~kG~ 370 (722)
+++.+ .++|++||+.+.+..
T Consensus 520 ~~a~~--~~~p~liev~~~~~~ 539 (558)
T TIGR00118 520 KEALS--SNEPVLLDVVVDKPE 539 (558)
T ss_pred HHHHh--CCCCEEEEEEeCCcc
Confidence 99987 489999999997544
No 132
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=99.32 E-value=2.3e-11 Score=116.93 Aligned_cols=127 Identities=25% Similarity=0.327 Sum_probs=102.5
Q ss_pred cchHHHHHhCCCceeecccchHHHHHHHHHHhcCCCeeEEEe-cHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCccCCCC
Q 004946 432 LSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCII-PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDG 510 (722)
Q Consensus 432 ~~l~~f~~~~p~R~~d~GIaE~~av~~AaGlA~~G~~p~~~t-~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG 510 (722)
..+-+...+.|++.+..++.|++++++|.|+|..|.+|++.+ +.+|+.++++++. .++..++||+++....|..+.++
T Consensus 24 ~~l~~~~~~~~~~~~~~~~~E~~a~~~A~G~a~~~~~~v~~~~~gpg~~~~~~~l~-~a~~~~~Pvl~i~~~~~~~~~~~ 102 (154)
T cd06586 24 SSLLDALREGDKRIIDTVIHELGAAGAAAGYARAGGPPVVIVTSGTGLLNAINGLA-DAAAEHLPVVFLIGARGISAQAK 102 (154)
T ss_pred HHHHHHHhccCCceEEeeCCHHHHHHHHHHHHHhhCCEEEEEcCCCcHHHHHHHHH-HHHhcCCCEEEEeCCCChhhhcc
Confidence 344444445689999999999999999999999987888886 5999999999986 88889999999997777655567
Q ss_pred CCcCcHHHHHHhcCCCCcEEEeeCCHHHHHHHHHHHhh---hCCCCEEEEecC
Q 004946 511 PTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVAS---IDDRPVCFRYPR 560 (722)
Q Consensus 511 ~TH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~---~~~~Pv~ir~~r 560 (722)
.+||..++..+++.+|++.+..|+..++. ..+..|+. ...+|++|++|+
T Consensus 103 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~a~~~~gPv~l~ip~ 154 (154)
T cd06586 103 QTFQSMFDLGMYRSIPEANISSPSPAELP-AGIDHAIRTAYASQGPVVVRLPR 154 (154)
T ss_pred CcccccCHHHHHHHhhheEEEeCCHHHHH-HHHHHHHHHHhcCCCCEEEEccC
Confidence 78999999999999999998887775544 44444444 236799998864
No 133
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=99.31 E-value=3.3e-11 Score=140.90 Aligned_cols=177 Identities=11% Similarity=0.081 Sum_probs=117.9
Q ss_pred chHHHHHHHHhhccCCCCcEEEecCC-chHHHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004946 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (722)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G 203 (722)
+..-.+...|...++ .++.++.|.| |+.|++.++.-.+ .+ +.+...+.|++|+++|+|+|
T Consensus 386 i~~~~~~~~l~~~l~-~d~ivv~d~G~~~~~~~~~~~~~~-----p~-------------~~~~~~~~g~mG~glp~aiG 446 (588)
T PRK07525 386 MHPRQALREIQKALP-EDAIVSTDIGNNCSIANSYLRFEK-----GR-------------KYLAPGSFGNCGYAFPAIIG 446 (588)
T ss_pred cCHHHHHHHHHHhCC-CCcEEEECCcccHHHHHHhcccCC-----CC-------------eEEccccccccccHHHHHHH
Confidence 444455556655553 4566778998 6667775443110 00 11111245899999999999
Q ss_pred HHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhH
Q 004946 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (722)
Q Consensus 204 ~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (722)
+++|. ++++||+++|||+|+ |...+|.+|.+++.|+++||.||+. +|.+.. .+. ..
T Consensus 447 a~la~----p~r~vv~i~GDG~f~--~~~~el~Ta~~~~lpv~ivV~NN~~-------------y~~~~~----~~~-~~ 502 (588)
T PRK07525 447 AKIAC----PDRPVVGFAGDGAWG--ISMNEVMTAVRHNWPVTAVVFRNYQ-------------WGAEKK----NQV-DF 502 (588)
T ss_pred HHHhC----CCCcEEEEEcCchHh--ccHHHHHHHHHhCCCeEEEEEeCch-------------hHHHHH----HHH-HH
Confidence 99984 589999999999997 7789999999999999999988875 232211 000 00
Q ss_pred HHHHHHHHhhhhhhcCccHHHHHHHHHHHhh-cc-cCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcC-CCCCE
Q 004946 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYAR-GM-IGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLG-SMGPV 360 (722)
Q Consensus 284 ~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~-~~-~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~-~~~P~ 360 (722)
| +.. +.. ++ -.++...++++||+++..+ .+.++|.++++++.+.. .++|+
T Consensus 503 ~--------------~~~----------~~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~el~~al~~a~~~~~~~~p~ 555 (588)
T PRK07525 503 Y--------------NNR----------FVGTELDNNVSYAGIAEAMGAEGVVV---DTQEELGPALKRAIDAQNEGKTT 555 (588)
T ss_pred h--------------CCC----------cccccCCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHHHHHhcCCCCCcE
Confidence 0 000 000 00 0135678999999999855 68999999999887631 25899
Q ss_pred EEEEEeeccCC
Q 004946 361 LVHVVTEENRR 371 (722)
Q Consensus 361 lI~v~T~kG~G 371 (722)
+|+|.+.+..|
T Consensus 556 lIev~~~~~~~ 566 (588)
T PRK07525 556 VIEIMCNQELG 566 (588)
T ss_pred EEEEEeccccC
Confidence 99999975544
No 134
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.31 E-value=1.8e-11 Score=129.37 Aligned_cols=146 Identities=17% Similarity=0.206 Sum_probs=112.6
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCC-CeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccC-CCCcc
Q 004946 190 NAGHGCNSVSAGLGMAVARDIKGKR-ECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEE-SPKTS 267 (722)
Q Consensus 190 ~~G~~G~~ls~A~G~A~A~~l~~~~-~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~-~~~~~ 267 (722)
-....|.+++.|.|++.|.+.++++ ..||+++|||++..+- +|+|++|+.++.|+++||.||++ ...|+.| ++..+
T Consensus 67 i~~~~G~~~~~A~G~a~A~~~~~~~~~~Vva~~GDG~~~~~g-~~~l~~A~~~~~~v~~vv~dN~~-~~~TGgQ~S~~Tp 144 (300)
T PRK11864 67 LHTAFAATAAVASGIEEALKARGEKGVIVVGWAGDGGTADIG-FQALSGAAERNHDILYIMYDNEA-YMNTGIQRSSSTP 144 (300)
T ss_pred eeehhhChHHHHHHHHHHHHhhCCCCcEEEEEEccCcccccc-HHHHHHHHHhCcCEEEEEECCee-eecCCCCCCCCCc
Confidence 3578899999999999998877664 5677799999987666 49999999999999999999997 5677775 67777
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHH
Q 004946 268 INALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISV 347 (722)
Q Consensus 268 ~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~a 347 (722)
.|+..++-. .|.... .-+...++.++|..|+..++-.|+.++.++
T Consensus 145 ~ga~t~tsp---------------------~G~~~~--------------kkdi~~i~~a~g~~yVA~~~~~~~~~~~~~ 189 (300)
T PRK11864 145 YGAWTTTTP---------------------GGKREH--------------KKPVPDIMAAHKVPYVATASIAYPEDFIRK 189 (300)
T ss_pred CCCccccCC---------------------CCCcCC--------------CCCHHHHHHHcCCCEEEEEeCCCHHHHHHH
Confidence 775533111 111100 012356889999999989999999999999
Q ss_pred HHHHHhcCCCCCEEEEEEee--ccCCCcc
Q 004946 348 LQEVASLGSMGPVLVHVVTE--ENRRAED 374 (722)
Q Consensus 348 l~~a~~~~~~~P~lI~v~T~--kG~G~~~ 374 (722)
++++.+ .+||.+|++.+. .++++.+
T Consensus 190 i~~A~~--~~Gps~I~~~spC~~~~~~~~ 216 (300)
T PRK11864 190 LKKAKE--IRGFKFIHLLAPCPPGWRFDP 216 (300)
T ss_pred HHHHHh--CCCCEEEEEeCCCCCCCCcCh
Confidence 999998 589999999974 4454443
No 135
>PRK08266 hypothetical protein; Provisional
Probab=99.31 E-value=4.1e-11 Score=138.92 Aligned_cols=129 Identities=17% Similarity=0.248 Sum_probs=94.8
Q ss_pred cCCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhh
Q 004946 191 AGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINA 270 (722)
Q Consensus 191 ~G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~ 270 (722)
.|++|+++|+|+|++++ .++++|||++|||+|+ |..++|.+|.++++|+++||.||+.. |.
T Consensus 401 ~GsmG~~lp~aiGa~la----~p~~~vv~v~GDG~f~--~~~~eL~ta~~~~lpv~ivv~NN~~y-------------~~ 461 (542)
T PRK08266 401 QGTLGYGFPTALGAKVA----NPDRPVVSITGDGGFM--FGVQELATAVQHNIGVVTVVFNNNAY-------------GN 461 (542)
T ss_pred CcccccHHHHHHHHHHh----CCCCcEEEEEcchhhh--ccHHHHHHHHHhCCCeEEEEEeCCcc-------------hH
Confidence 48999999999999887 4589999999999997 67899999999999999998888741 21
Q ss_pred hhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHH
Q 004946 271 LSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQE 350 (722)
Q Consensus 271 l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~ 350 (722)
+.. . ++.....+ ..+. ++-.++...++++||+++..+ .+.++|.+++++
T Consensus 462 ~~~-~---------~~~~~~~~----~~~~--------------~~~~~d~~~la~a~G~~~~~v---~~~~el~~al~~ 510 (542)
T PRK08266 462 VRR-D---------QKRRFGGR----VVAS--------------DLVNPDFVKLAESFGVAAFRV---DSPEELRAALEA 510 (542)
T ss_pred HHH-H---------HHHhcCCC----cccC--------------CCCCCCHHHHHHHcCCeEEEe---CCHHHHHHHHHH
Confidence 110 0 00000000 0000 011245678999999999855 678999999999
Q ss_pred HHhcCCCCCEEEEEEeeccCC
Q 004946 351 VASLGSMGPVLVHVVTEENRR 371 (722)
Q Consensus 351 a~~~~~~~P~lI~v~T~kG~G 371 (722)
+.+ .++|++|++.|.++..
T Consensus 511 a~~--~~~p~liev~i~~~~~ 529 (542)
T PRK08266 511 ALA--HGGPVLIEVPVPRGSE 529 (542)
T ss_pred HHh--CCCcEEEEEEecCCCC
Confidence 887 5789999999987743
No 136
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=99.30 E-value=1.4e-11 Score=142.62 Aligned_cols=169 Identities=17% Similarity=0.158 Sum_probs=112.6
Q ss_pred chHHHHHHHHhhccCCCCcEEEecCCchHHHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHH
Q 004946 125 LAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGM 204 (722)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G~ 204 (722)
+..-.+...|..+++ +++.++.|.|...|....+.- +.+ .+.....+.|++|+++|+|+|+
T Consensus 356 l~~~~~~~~l~~~l~-~~~iiv~d~G~~~~~~~~~~~-----------------~~~-~~~~~~~~~g~mG~glpaaiGa 416 (539)
T TIGR03393 356 LSQENFWQTLQTFLR-PGDIILADQGTSAFGAADLRL-----------------PAD-VNFIVQPLWGSIGYTLPAAFGA 416 (539)
T ss_pred cCHHHHHHHHHHhcC-CCCEEEEccCchhhhhhhccC-----------------CCC-CeEEechhhhhhhhHHHHHHHH
Confidence 445455555655554 578888899942343322110 000 0011112458999999999999
Q ss_pred HHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhHH
Q 004946 205 AVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSF 284 (722)
Q Consensus 205 A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~ 284 (722)
++|. ++++|||++|||+|+ |+.++|.+|.+++.|+++||.||+.. |.+.. ..... ..|
T Consensus 417 ~la~----p~~~vv~i~GDG~f~--m~~~EL~Ta~~~~lpi~~vV~NN~~y-------------~~i~~-~~~~~--~~~ 474 (539)
T TIGR03393 417 QTAC----PNRRVILLIGDGSAQ--LTIQELGSMLRDKQHPIILVLNNEGY-------------TVERA-IHGAE--QRY 474 (539)
T ss_pred HhcC----CCCCeEEEEcCcHHH--hHHHHHHHHHHcCCCCEEEEEeCCce-------------EEEEe-ecCCC--CCc
Confidence 9984 589999999999997 99999999999999998888888752 11100 00000 000
Q ss_pred HHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCce----EEeecCCCCHHHHHHHHHHHHhcCCCCCE
Q 004946 285 RQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLY----YIGPVDGHNIEDLISVLQEVASLGSMGPV 360 (722)
Q Consensus 285 ~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~----~~~~vdGhd~~~l~~al~~a~~~~~~~P~ 360 (722)
.++-.+++..++++||.. +..+ .+.++|.++++++.+ .++|+
T Consensus 475 -----------------------------~~~~~~df~~la~a~G~~~~~~~~~v---~~~~el~~al~~a~~--~~~p~ 520 (539)
T TIGR03393 475 -----------------------------NDIALWNWTHLPQALSLDPQSECWRV---SEAEQLADVLEKVAA--HERLS 520 (539)
T ss_pred -----------------------------CcCCCCCHHHHHHHcCCCCccceEEe---ccHHHHHHHHHHHhc--cCCeE
Confidence 001113457789999985 5545 789999999999987 58999
Q ss_pred EEEEEeec
Q 004946 361 LVHVVTEE 368 (722)
Q Consensus 361 lI~v~T~k 368 (722)
+|+|.+.+
T Consensus 521 liev~i~~ 528 (539)
T TIGR03393 521 LIEVVLPK 528 (539)
T ss_pred EEEEEcCc
Confidence 99999853
No 137
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=99.29 E-value=2.5e-11 Score=141.92 Aligned_cols=128 Identities=15% Similarity=0.235 Sum_probs=95.2
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchh
Q 004946 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (722)
Q Consensus 190 ~~G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (722)
+.|++|+++|+|+|+++|. ++++|||++|||+|+ |...+|.+|.++++|+++||.||+. +|
T Consensus 417 ~~gsmG~~lpaaiGa~la~----p~~~Vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~~vV~NN~~-------------~g 477 (586)
T PRK06276 417 GLGTMGFGFPAAIGAKVAK----PDANVIAITGDGGFL--MNSQELATIAEYDIPVVICIFDNRT-------------LG 477 (586)
T ss_pred CccccccchhHHHhhhhhc----CCCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCCc-------------hH
Confidence 4589999999999999984 578999999999997 8889999999999999999999985 23
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcc-cCCChhhhHhhcCceEEeecCCCCHHHHHHHH
Q 004946 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM-IGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (722)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al 348 (722)
.+.. .++.. . +.... . .++ ...+...++++||+++..+ ++.++|.++|
T Consensus 478 ~~~~-~~~~~------------~------~~~~~--------~-~~~~~~~d~~~la~a~G~~~~~v---~~~~el~~al 526 (586)
T PRK06276 478 MVYQ-WQNLY------------Y------GKRQS--------E-VHLGETPDFVKLAESYGVKADRV---EKPDEIKEAL 526 (586)
T ss_pred HHHH-HHHHH------------h------CCCcc--------c-ccCCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHH
Confidence 2211 00000 0 00000 0 000 1235678999999999866 8899999999
Q ss_pred HHHHhcCCCCCEEEEEEeecc
Q 004946 349 QEVASLGSMGPVLVHVVTEEN 369 (722)
Q Consensus 349 ~~a~~~~~~~P~lI~v~T~kG 369 (722)
+++.+ .++|.+|+|.+.+.
T Consensus 527 ~~a~~--~~~p~lIeV~i~~~ 545 (586)
T PRK06276 527 KEAIK--SGEPYLLDIIIDPA 545 (586)
T ss_pred HHHHh--CCCCEEEEEEeccc
Confidence 99987 58999999999643
No 138
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=99.29 E-value=3.5e-11 Score=139.05 Aligned_cols=170 Identities=19% Similarity=0.236 Sum_probs=112.3
Q ss_pred chHHHHHHHHhhccCCCCcEEEecCC-chHHHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004946 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (722)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G 203 (722)
+....+...|...++ +++.++.|.| |..|....+.-+ + |. +.+. ...|++|+++|+|+|
T Consensus 359 l~~~~~~~~l~~~l~-~~~ivv~d~g~~~~~~~~~~~~~--------~-------~~---~~~~-~~~g~mG~~lp~aiG 418 (530)
T PRK07092 359 LSVAFVLQTLAALRP-ADAIVVEEAPSTRPAMQEHLPMR--------R-------QG---SFYT-MASGGLGYGLPAAVG 418 (530)
T ss_pred cCHHHHHHHHHHhCC-CCeEEEeCCCccHHHHHHhcCcC--------C-------CC---ceEc-cCCCcccchHHHHHH
Confidence 444555556655553 5667778988 545555333211 0 00 0111 124889999999999
Q ss_pred HHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhH
Q 004946 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (722)
Q Consensus 204 ~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (722)
+++|. ++++|||++|||+++ |..++|++|.++++|+++||.||+. +|.+.. +
T Consensus 419 a~la~----p~~~vv~i~GDG~f~--~~~~eL~ta~~~~lp~~~vv~NN~~-------------~~~~~~-~-------- 470 (530)
T PRK07092 419 VALAQ----PGRRVIGLIGDGSAM--YSIQALWSAAQLKLPVTFVILNNGR-------------YGALRW-F-------- 470 (530)
T ss_pred HHHhC----CCCeEEEEEeCchHh--hhHHHHHHHHHhCCCcEEEEEeChH-------------HHHHHH-H--------
Confidence 99984 588999999999998 6679999999999999999988884 121100 0
Q ss_pred HHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEEE
Q 004946 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVH 363 (722)
Q Consensus 284 ~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~ 363 (722)
++.. ......+. .+-..+...++++||+++..+ .+.++|.++++++.+ .++|++|+
T Consensus 471 -~~~~----~~~~~~~~--------------~~~~~d~~~~a~~~G~~~~~v---~~~~~l~~al~~a~~--~~~p~lie 526 (530)
T PRK07092 471 -APVF----GVRDVPGL--------------DLPGLDFVALARGYGCEAVRV---SDAAELADALARALA--ADGPVLVE 526 (530)
T ss_pred -HHhh----CCCCCCCC--------------CCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHHHHHHh--CCCCEEEE
Confidence 0000 00000000 011234578999999999854 578999999999986 58999999
Q ss_pred EEe
Q 004946 364 VVT 366 (722)
Q Consensus 364 v~T 366 (722)
+.|
T Consensus 527 v~~ 529 (530)
T PRK07092 527 VEV 529 (530)
T ss_pred EEc
Confidence 987
No 139
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=99.28 E-value=1.6e-11 Score=142.78 Aligned_cols=173 Identities=12% Similarity=0.145 Sum_probs=113.9
Q ss_pred chHHHHHHHHhhccCCCCcEEEecCC-chHHHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004946 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (722)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G 203 (722)
+....+..+|...++ +++.++.|.| |..|+..++.-. .+ ......-+.|++|+++|+|+|
T Consensus 369 l~~~~~~~~l~~~~~-~~~ivv~d~G~~~~~~~~~~~~~-----------------~~-~~~~~~~~~g~mG~glpaaiG 429 (566)
T PRK07282 369 VQPQAVIERIGELTN-GDAIVVTDVGQHQMWAAQYYPYQ-----------------NE-RQLVTSGGLGTMGFGIPAAIG 429 (566)
T ss_pred cCHHHHHHHHHhhcC-CCeEEEECCcHHHHHHHHhcccC-----------------CC-CcEecCCccccccchhhHhhe
Confidence 444556666655443 4567778988 444554322210 00 011111245899999999999
Q ss_pred HHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhH
Q 004946 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (722)
Q Consensus 204 ~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (722)
+++|. ++++||+++|||+|+ |+.++|.+|.++++|+++||.||+. ++.+..
T Consensus 430 a~lA~----p~~~Vv~i~GDG~f~--m~~~eL~Ta~~~~l~i~~vV~NN~~-------------y~~i~~---------- 480 (566)
T PRK07282 430 AKIAN----PDKEVILFVGDGGFQ--MTNQELAILNIYKVPIKVVMLNNHS-------------LGMVRQ---------- 480 (566)
T ss_pred eheec----CCCcEEEEEcchhhh--ccHHHHHHHHHhCCCeEEEEEeCCC-------------chHHHH----------
Confidence 99984 589999999999996 8999999999999999999988885 232210
Q ss_pred HHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcc-cCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEE
Q 004946 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM-IGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLV 362 (722)
Q Consensus 284 ~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI 362 (722)
+++.... + .. ....+ -.++...++|+||.++..+ .+.++|.++++.+ . .++|++|
T Consensus 481 ~q~~~~~--------~-~~---------~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~el~~al~~~-~--~~~p~lI 536 (566)
T PRK07282 481 WQESFYE--------G-RT---------SESVFDTLPDFQLMAQAYGIKHYKF---DNPETLAQDLEVI-T--EDVPMLI 536 (566)
T ss_pred HHHHHhC--------C-Cc---------ccccCCCCCCHHHHHHHCCCEEEEE---CCHHHHHHHHHHh-c--CCCCEEE
Confidence 0000000 0 00 00001 0245678999999999866 7899999999754 3 4899999
Q ss_pred EEEeecc
Q 004946 363 HVVTEEN 369 (722)
Q Consensus 363 ~v~T~kG 369 (722)
+|.+.+.
T Consensus 537 eV~v~~~ 543 (566)
T PRK07282 537 EVDISRK 543 (566)
T ss_pred EEEeCCc
Confidence 9999653
No 140
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=99.27 E-value=5.2e-10 Score=136.31 Aligned_cols=296 Identities=16% Similarity=0.135 Sum_probs=189.3
Q ss_pred chHHHHHHHHHHHHhcCCCEE----EEecCCCCc--cchH-HHHHhCC------CceeecccchHHHHHHHHHHh-----
Q 004946 402 TYDDCFIEALVMEAEKDKDIV----VVHAGMEMD--LSLQ-LFQEKFP------ERYFDVGMAEQHAVTFSAGLA----- 463 (722)
Q Consensus 402 s~~~a~~~~L~~~~~~d~~iv----~i~ad~~~~--~~l~-~f~~~~p------~R~~d~GIaE~~av~~AaGlA----- 463 (722)
+=.+|+...+.+..+.|..-= .+-....|+ +++. .|. ++. +-+|++|++|.-+.+++.|.+
T Consensus 21 ~GneAivr~~l~q~~~d~~aG~~ta~~vsgYpGsP~~~i~~~l~-~~~~~l~~~~i~~e~~~NEkvA~e~a~Gaq~~~~~ 99 (1159)
T PRK13030 21 TGTQALVRLLLMQRRRDRARGLNTAGFVSGYRGSPLGGVDQALW-KAKKLLDASDIRFLPGINEELAATAVLGTQQVEAD 99 (1159)
T ss_pred eHHHHHHHHHHHhhhHHHhcCCCccceEEEeCCCCHHHHHHHHH-HhhhhhcccceEEeecCCHHHHHHHHHHhcccccc
Confidence 446788888877766665321 122223333 3332 333 222 379999999999999999999
Q ss_pred ----cCCCeeEEEecHhhHHHHHHHHHHHHhcCCC----C-EEEEEeCCCccCCCCCCcCcHHHHHHhcCCCCcEEEeeC
Q 004946 464 ----CGGLKPFCIIPSAFLQRAYDQVVNDVDQQRL----P-VRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPS 534 (722)
Q Consensus 464 ----~~G~~p~~~t~~~Fl~ra~dqi~~~~a~~~l----p-Vv~v~~~~G~~G~dG~TH~~~~d~a~~~~iP~l~V~~Ps 534 (722)
..|.+.+++.-.+.+.++.|.++|. ++... - |++++|..|..+ ..+-|++.-......|| |+.|+
T Consensus 100 ~~~~~~Gv~~l~~~K~~GvnvaaD~l~~~-n~~G~~~~GG~v~v~gDDpg~~S--Sq~eqdSr~~~~~a~iP---vl~Ps 173 (1159)
T PRK13030 100 PERTVDGVFAMWYGKGPGVDRAGDALKHG-NAYGSSPHGGVLVVAGDDHGCVS--SSMPHQSDFALIAWHMP---VLNPA 173 (1159)
T ss_pred CCccccceEEEEecCcCCcccchhHHHHH-HhhcCCCCCcEEEEEecCCCCcc--CcCHHHHHHHHHHcCCc---eeCCC
Confidence 6777779999999999999988644 44443 2 555556666532 23445555555566666 99999
Q ss_pred CHHHHHHHHHHHhhh---CCCCEEEEecCCC------cc--c--c--cCCC-CCCCC------cc---------------
Q 004946 535 DEDELVDMVATVASI---DDRPVCFRYPRGA------IV--R--T--DLPG-YRGIP------IE--------------- 577 (722)
Q Consensus 535 d~~E~~~~l~~a~~~---~~~Pv~ir~~r~~------~~--~--~--~~p~-~~~~~------~~--------------- 577 (722)
|++|++++.+++++. .+-||.+|..... .. . . ..|. ....+ +.
T Consensus 174 ~~qE~~d~~~~a~~lSr~~~~pV~lr~~t~v~h~~~~V~~~~~~~~~~~~~~f~~~~~~~~~r~~~~p~~~~~~~~~~rl 253 (1159)
T PRK13030 174 NVQEYLDFGLYGWALSRYSGAWVGFKAISETVESGSTVDLDPDRTRWPAPEDFTPPAGGLHNRWPDLPSLAIEARLAAKL 253 (1159)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeeeEEcCCCcccCCCccccCCCcccccccCCCCcHHHHHHHHHHHH
Confidence 999999999999975 4459999864321 00 0 0 0110 00000 00
Q ss_pred ----------ccccEEEEEeCCcEEEEEechhhHHHHHHHHHHHhcC-----CcEEEeecCccccchHHHHHHHhcCCCe
Q 004946 578 ----------EIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLG-----IDVTVADARFCKPLDIKLVRELCQNHTF 642 (722)
Q Consensus 578 ----------~igk~~vl~eG~dv~lva~Gs~v~~aleAa~~L~~~G-----i~v~Vidl~~lkPld~e~i~~~~~~~~~ 642 (722)
++.+..+-.++.++.||++|.....++||.+.|...+ +.++++.+...+||+.+.+++.++.++.
T Consensus 254 ~~~~~~~~~~~ln~~~~~~~~~~iGIItsG~ay~~v~EAL~~Lgl~~~~~~~lgirilKvgm~~PL~~~~i~~F~~g~d~ 333 (1159)
T PRK13030 254 PAVRAFARANSIDRWVAPSPDARVGIVTCGKAHLDLMEALRRLGLDDADLRAAGIRIYKVGLSWPLEPTRLREFADGLEE 333 (1159)
T ss_pred HHHHHHHHhcCCCceeccCCCCCEEEEEeCccHHHHHHHHHHcCCCcccccccCccEEEeCCccCCCHHHHHHHHhcCCE
Confidence 1111111012367999999999999999999874433 2477888889999999999999999999
Q ss_pred EEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHc-CCCHHHHHHHHHHHhhc
Q 004946 643 LITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALA-GLTGHHIAATALSLLGR 713 (722)
Q Consensus 643 vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~v~~ig~~d~f~~~g~~~~l~~~~-gl~~~~I~~~i~~ll~~ 713 (722)
|+||||... =+-.++.+.+..... ..+...+|..|. +|. .++... .|+++.|++.+.+.++.
T Consensus 334 VlVVEE~~p-~iE~Qlk~~l~~~~~---~~~~~v~GK~~~---~G~--pllp~~gEl~~~~v~~~l~~~l~~ 396 (1159)
T PRK13030 334 ILVIEEKRP-VIEQQIKDYLYNRPG---GARPRVVGKHDE---DGA--PLLSELGELRPSLIAPVLAARLAR 396 (1159)
T ss_pred EEEEeCCch-HHHHHHHHHHHhccc---cCCceeEEEECC---CCC--cCCCCcCCcCHHHHHHHHHHHHhc
Confidence 999999863 245566666654432 112233444321 121 122233 38999999998776653
No 141
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=99.27 E-value=4e-11 Score=124.06 Aligned_cols=140 Identities=19% Similarity=0.252 Sum_probs=92.4
Q ss_pred CcCCCcchHHHHHHHHHHHH-HcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCC-CCcc
Q 004946 190 NAGHGCNSVSAGLGMAVARD-IKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEES-PKTS 267 (722)
Q Consensus 190 ~~G~~G~~ls~A~G~A~A~~-l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~-~~~~ 267 (722)
+.|.+|+++|+|+|+++|.. ...++++|||+.|||++.. +...++.++.+++.|+++||.||+... .+..|. ....
T Consensus 62 ~~g~mG~GlpaAiGA~~a~~~~~~p~~~Vv~i~GDG~~~~-~g~~~l~ta~~~~l~i~ivVlNN~~yg-~~~~q~~~~~~ 139 (237)
T cd02018 62 DANAVASGLKRGLKARFPKDRELDKKKDVVVIGGDGATYD-IGFGALSHSLFRGEDITVIVLDNEVYS-NTGGQRSGATP 139 (237)
T ss_pred CHHHHHHHHHHHHHhhcccccccCCCCcEEEEeCchHHHh-ccHHHHHHHHHcCCCeEEEEECCcccc-CCCCCCCCCCc
Confidence 34899999999999988721 1135899999999998741 345678888889999999999998632 221110 0000
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHH
Q 004946 268 INALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISV 347 (722)
Q Consensus 268 ~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~a 347 (722)
.|.... . ...+ ...-.++...+++++|+.+...+.=.++++|.++
T Consensus 140 ~g~~~~--------------------~-~~~~--------------~~~~~~D~~~iA~a~G~~~~~~~~v~~~~~l~~a 184 (237)
T cd02018 140 LGADSK--------------------M-APAG--------------KKEDKKDLVLIAATHGCVYVARLSPALKKHFLKV 184 (237)
T ss_pred CCCccc--------------------c-cCCC--------------CcCCCCCHHHHHHHCCCCEEEEEccCCHHHHHHH
Confidence 000000 0 0000 0011245678999999999864333679999999
Q ss_pred HHHHHhcCCCCCEEEEEEee
Q 004946 348 LQEVASLGSMGPVLVHVVTE 367 (722)
Q Consensus 348 l~~a~~~~~~~P~lI~v~T~ 367 (722)
|+++.+ +.++|++|++.+.
T Consensus 185 l~~al~-~~~GP~lI~v~i~ 203 (237)
T cd02018 185 VKEAIS-RTDGPTFIHAYTP 203 (237)
T ss_pred HHHHHh-cCCCCEEEEEeCC
Confidence 999875 1388999999974
No 142
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.25 E-value=6.2e-11 Score=124.65 Aligned_cols=133 Identities=13% Similarity=0.107 Sum_probs=94.5
Q ss_pred CCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccC-CCCcchhh
Q 004946 192 GHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEE-SPKTSINA 270 (722)
Q Consensus 192 G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~-~~~~~~g~ 270 (722)
|.+|.++|+|+|+++| .++++|||++|||++. .+..++|.+|++++.|+++||.||+... .|..| +...+.|.
T Consensus 60 ~~mG~alp~AiGaklA----~pd~~VVai~GDG~~~-~iG~~eL~tA~r~nl~i~~IV~NN~~Yg-~t~~Q~s~~t~~g~ 133 (280)
T PRK11869 60 TLHGRAIPAATAVKAT----NPELTVIAEGGDGDMY-AEGGNHLIHAIRRNPDITVLVHNNQVYG-LTKGQASPTTLKGF 133 (280)
T ss_pred cccccHHHHHHHHHHH----CCCCcEEEEECchHHh-hCcHHHHHHHHHhCcCcEEEEEECHHHh-hhcceecCCCCCCc
Confidence 4578999999999888 4689999999999975 2337899999999999999999998522 23222 22222221
Q ss_pred hhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHH
Q 004946 271 LSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQE 350 (722)
Q Consensus 271 l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~ 350 (722)
... ....|.. ....+...+++++|..++...+-.++++|.+++++
T Consensus 134 ~~~---------------------~~p~g~~--------------~~~~D~~~lA~a~G~~~va~~~~~~~~~l~~~i~~ 178 (280)
T PRK11869 134 KTP---------------------TQPWGVF--------------EEPFNPIALAIALDASFVARTFSGDIEETKEILKE 178 (280)
T ss_pred ccc---------------------cCCCCcc--------------CCCCCHHHHHHHCCCCEEEEeCCCCHHHHHHHHHH
Confidence 100 0000000 00124577999999999876555799999999999
Q ss_pred HHhcCCCCCEEEEEEee
Q 004946 351 VASLGSMGPVLVHVVTE 367 (722)
Q Consensus 351 a~~~~~~~P~lI~v~T~ 367 (722)
+.+ .++|++|++.+.
T Consensus 179 Al~--~~Gp~lIeV~~p 193 (280)
T PRK11869 179 AIK--HKGLAIVDIFQP 193 (280)
T ss_pred HHh--CCCCEEEEEECC
Confidence 998 589999999874
No 143
>PLN02573 pyruvate decarboxylase
Probab=99.24 E-value=2.9e-11 Score=140.94 Aligned_cols=168 Identities=14% Similarity=0.134 Sum_probs=112.6
Q ss_pred chHHHHHHHHhhccCCCCcEEEecCCchHHHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHH
Q 004946 125 LAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGM 204 (722)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G~ 204 (722)
+..-.+..+|..+++ +++.|+.|.|...+....+ + +|.+. ......+.|++|+++|+|+|+
T Consensus 380 i~~~~~~~~l~~~l~-~d~iiv~D~G~~~~~~~~~----------~-------~~~~~-~~~~~~~~gsmG~glpaaiGa 440 (578)
T PLN02573 380 LRVNVLFKHIQKMLS-GDTAVIAETGDSWFNCQKL----------K-------LPEGC-GYEFQMQYGSIGWSVGATLGY 440 (578)
T ss_pred cCHHHHHHHHHHhcC-CCCEEEEecccchhhHHhc----------c-------CCCCC-eEEeecchhhhhhhhhHHHHH
Confidence 555566666765554 6778888998532111000 0 11100 001112458999999999999
Q ss_pred HHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhHH
Q 004946 205 AVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSF 284 (722)
Q Consensus 205 A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~ 284 (722)
++|. ++++|||++|||+|+ |+.++|.+|.++++|+++||.||+.. |.... .+ ...|
T Consensus 441 ~lA~----p~r~vv~i~GDG~f~--m~~~EL~Ta~r~~lpvv~vV~NN~~y-------------g~~~~----~~-~~~~ 496 (578)
T PLN02573 441 AQAA----PDKRVIACIGDGSFQ--VTAQDVSTMIRCGQKSIIFLINNGGY-------------TIEVE----IH-DGPY 496 (578)
T ss_pred HHhC----CCCceEEEEeccHHH--hHHHHHHHHHHcCCCCEEEEEeCCce-------------eEEEe----ec-ccCc
Confidence 9985 589999999999996 99999999999999999999888852 21100 00 0000
Q ss_pred HHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcC-----ceEEeecCCCCHHHHHHHHHHHHhcCCCCC
Q 004946 285 RQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELG-----LYYIGPVDGHNIEDLISVLQEVASLGSMGP 359 (722)
Q Consensus 285 ~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G-----~~~~~~vdGhd~~~l~~al~~a~~~~~~~P 359 (722)
...-.+++..++++|| +++..+ .+.++|.++|+++.+...++|
T Consensus 497 -----------------------------~~~~~~d~~~lA~a~G~~~g~~~~~~V---~~~~eL~~al~~a~~~~~~~p 544 (578)
T PLN02573 497 -----------------------------NVIKNWNYTGLVDAIHNGEGKCWTAKV---RTEEELIEAIATATGEKKDCL 544 (578)
T ss_pred -----------------------------cccCCCCHHHHHHHhcCcCCceeEEEe---cCHHHHHHHHHHHHhhCCCCc
Confidence 0001134567889985 777755 679999999999873114889
Q ss_pred EEEEEEee
Q 004946 360 VLVHVVTE 367 (722)
Q Consensus 360 ~lI~v~T~ 367 (722)
++|+|.+.
T Consensus 545 ~lieV~v~ 552 (578)
T PLN02573 545 CFIEVIVH 552 (578)
T ss_pred EEEEEEcC
Confidence 99999985
No 144
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=99.23 E-value=1.2e-10 Score=124.03 Aligned_cols=133 Identities=14% Similarity=0.154 Sum_probs=92.8
Q ss_pred CCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccC-CCCcchhh
Q 004946 192 GHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEE-SPKTSINA 270 (722)
Q Consensus 192 G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~-~~~~~~g~ 270 (722)
|.+|.++|+|+|+++|. ++++|||+.|||++. ++...+|.+|++++.|+++||.||+...+ |..| +...+.|.
T Consensus 70 g~mG~alpaAiGaklA~----pd~~VV~i~GDG~~~-~mg~~eL~tA~r~nl~i~vIV~NN~~YG~-t~gQ~s~t~~~g~ 143 (301)
T PRK05778 70 TLHGRAIAFATGAKLAN----PDLEVIVVGGDGDLA-SIGGGHFIHAGRRNIDITVIVENNGIYGL-TKGQASPTTPEGS 143 (301)
T ss_pred hhhccHHHHHHHHHHHC----CCCcEEEEeCccHHH-hccHHHHHHHHHHCCCcEEEEEeCchhhc-ccCcccCCcCCCc
Confidence 67899999999999984 589999999999973 46678899999999999999999986321 2111 11111110
Q ss_pred hhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHH
Q 004946 271 LSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQE 350 (722)
Q Consensus 271 l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~ 350 (722)
... ....|.. ....+...+++++|+.++....-.+.++|.+++++
T Consensus 144 ~~~---------------------~~~~g~~--------------~~~~d~~~lA~a~G~~~va~~~v~~~~eL~~ai~~ 188 (301)
T PRK05778 144 KTK---------------------TAPYGNI--------------EPPIDPCALALAAGATFVARSFAGDVKQLVELIKK 188 (301)
T ss_pred ccc---------------------cccCCCc--------------CCCCCHHHHHHHCCCCEEEEeccCCHHHHHHHHHH
Confidence 000 0000000 00134577999999998743344789999999999
Q ss_pred HHhcCCCCCEEEEEEee
Q 004946 351 VASLGSMGPVLVHVVTE 367 (722)
Q Consensus 351 a~~~~~~~P~lI~v~T~ 367 (722)
+.+ .++|.+|+|.+.
T Consensus 189 A~~--~~GpalIeV~~~ 203 (301)
T PRK05778 189 AIS--HKGFAFIDVLSP 203 (301)
T ss_pred HHh--CCCCEEEEEcCC
Confidence 987 589999998864
No 145
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=99.23 E-value=1.8e-10 Score=134.38 Aligned_cols=128 Identities=14% Similarity=0.153 Sum_probs=91.7
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchh
Q 004946 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (722)
Q Consensus 190 ~~G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (722)
|.|++|+++|+|+|+++| . +++|||++|||+|+ |...+|.+|.++++|+++||.||+...+ ++
T Consensus 423 g~~~~G~~lpaaiGaala-~----~~~vv~i~GDGsf~--~~~~eL~Ta~r~~l~i~ivVlNN~g~~~----------~~ 485 (568)
T PRK07449 423 GASGIDGLLSTAAGVARA-S----AKPTVALIGDLSFL--HDLNGLLLLKQVPAPLTIVVVNNNGGGI----------FS 485 (568)
T ss_pred CccchhhHHHHHHHHHhc-C----CCCEEEEechHHhh--cCcHHHHhhcccCCCeEEEEEECCCCcc----------cc
Confidence 457799999999999988 3 78999999999997 6778999999999999999988885210 00
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHH
Q 004946 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (722)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~ 349 (722)
.+ ...+.. .|. .++....-.+++..++++||+++..+ ++.++|.++|+
T Consensus 486 ~~----~~~~~~-~~~------------------------~~~~~~~~~~df~~lA~a~G~~~~~V---~~~~eL~~al~ 533 (568)
T PRK07449 486 LL----PQPEEE-PVF------------------------ERFFGTPHGVDFAHAAAMYGLEYHRP---ETWAELEEALA 533 (568)
T ss_pred CC----CCCCCc-chh------------------------hHhhcCCCCCCHHHHHHHcCCCccCC---CCHHHHHHHHH
Confidence 00 000000 000 00000001235678999999998755 78999999999
Q ss_pred HHHhcCCCCCEEEEEEeec
Q 004946 350 EVASLGSMGPVLVHVVTEE 368 (722)
Q Consensus 350 ~a~~~~~~~P~lI~v~T~k 368 (722)
++.+ .++|++|+|.+.+
T Consensus 534 ~a~~--~~~p~lIev~id~ 550 (568)
T PRK07449 534 DALP--TPGLTVIEVKTNR 550 (568)
T ss_pred HHhc--CCCCEEEEEeCCh
Confidence 9986 5899999999953
No 146
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=99.19 E-value=5.2e-10 Score=118.53 Aligned_cols=216 Identities=17% Similarity=0.192 Sum_probs=119.8
Q ss_pred CCCCCCcchHHHHHHHHhhccC-CC-CcEEEecCCchH---HHHHHHhCch-----------hhhhH-HHhhCCCCCCCC
Q 004946 118 EKSLKSSLAAVELTVALHHVFH-AP-VDKILWDVGEQT---YAHKILTGRR-----------SLIHT-LRKKDGISGYTS 180 (722)
Q Consensus 118 gGh~~~slg~vel~~aL~~vf~-~p-~D~iv~d~GH~~---y~h~~ltGr~-----------~~~~~-~r~~ggl~g~~~ 180 (722)
-||.|.+-|+.=+.+.|.++-+ .. +=.+|...||.. .+..+|.|.. +.|.. +|||.--.|+|+
T Consensus 47 lGHWGt~PGlnfiyahlNrlI~~~~~~~~~v~GpGHg~pai~A~~~LeGs~se~yp~~~~d~~Gl~~L~~~FS~PgGipS 126 (379)
T PF09364_consen 47 LGHWGTSPGLNFIYAHLNRLIRKYDLDMIYVMGPGHGGPAILANLYLEGSYSEFYPDISQDEEGLRRLFRQFSFPGGIPS 126 (379)
T ss_dssp -S-TTTHHHHHHHHHHHHHHHHHHTB-B--EESSGGGHHHHHHHHHHHSHHHHHSTTS-SSHHHHHHHHHHBTSTTSB-S
T ss_pred ccccCCCccHHHHHHHHHHHHHhcCCceEEEecCCCCchhhhhhhhhcCccccccCCCCCCHHHHHHHHHhCCCCCCCcc
Confidence 3999999999777777765432 12 234667889987 6777888842 22333 366643345554
Q ss_pred C--CCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcC----CCEEEEEECCCC
Q 004946 181 R--SESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLD----SNMIVILNDSRH 254 (722)
Q Consensus 181 ~--~es~~d~~~~G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~----~plivIv~dN~~ 254 (722)
. .+.|+...-.|-+|.+++.|.|+++- ++|-.|+||+|||+..+|-..-+...-..++ ..++-|+.-|++
T Consensus 127 H~~p~tPGsIhEGGELGYaLshA~GA~~D----nPdliv~~vvGDGEaETGplA~sWh~~kflnP~~dGaVLPILhLNG~ 202 (379)
T PF09364_consen 127 HVSPETPGSIHEGGELGYALSHAFGAVFD----NPDLIVACVVGDGEAETGPLAASWHSNKFLNPATDGAVLPILHLNGY 202 (379)
T ss_dssp SS-TTSTT-S---SSTS-HHHHHHHHHTT-----TT-EEEEEEETTGGGSHHHHHHGGGGGSS-TTTS-EEEEEEEE-SB
T ss_pred ccCcCCCCccCcCcchhhHHHHHhhcccC----CCCeEEEEEecCCcccCCcccccccccceeCcccCceeeceEEecCc
Confidence 3 23343323348889999999988874 6799999999999999886544443334433 469999999998
Q ss_pred -CCCCCccCCCCcchhhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEE
Q 004946 255 -SLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYI 333 (722)
Q Consensus 255 -~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~ 333 (722)
.+-|| + +.++. - ++ ...+|+.+||..+
T Consensus 203 KI~~pT--------i------l~r~~----------------------~-------~e---------L~~lf~G~Gy~p~ 230 (379)
T PF09364_consen 203 KISNPT--------I------LARMS----------------------D-------EE---------LEALFRGYGYEPI 230 (379)
T ss_dssp SSSSB---------H------HHHS-----------------------H-------HH---------HHHHHHHTTEEEE
T ss_pred cccCCe--------E------eeecC----------------------H-------HH---------HHHHHHhCCCeEE
Confidence 33222 1 11110 0 01 1458999999998
Q ss_pred eecCCCCHHHHHHH--------HHHHHhc--------CCCCC--EEEEEEeeccCCCccccc---ccchhhccCCCCC
Q 004946 334 GPVDGHNIEDLISV--------LQEVASL--------GSMGP--VLVHVVTEENRRAEDTQK---SEAIEKQQEGASD 390 (722)
Q Consensus 334 ~~vdGhd~~~l~~a--------l~~a~~~--------~~~~P--~lI~v~T~kG~G~~~ae~---~~~~~~~H~~~~~ 390 (722)
.|+|+|++++.+. ++++++. ...+| -+|.++|.||++.|..-. .|+.-+.|.|+.+
T Consensus 231 -~Veg~dp~~~h~~ma~ald~a~~~I~~iq~~Ar~~~~~~~prwPmivlRtPKGWtgP~~vdG~~iEGt~raHQVPl~ 307 (379)
T PF09364_consen 231 -FVEGDDPADMHQAMAAALDWALEEIRAIQKAARSGNPAYRPRWPMIVLRTPKGWTGPKEVDGKPIEGTFRAHQVPLP 307 (379)
T ss_dssp -EEE---HHHHHHHHHHHHHHHHHHHHHHHHHHTT--SS----EEEEEEE--TTTTS-SEETTEE-TTSGGGSS-SST
T ss_pred -EEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCcEEEEECCcccCCccccCCccccCcceeeecccc
Confidence 7899998655433 2333321 11234 378999999999874311 1246677888763
No 147
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=99.19 E-value=1.7e-10 Score=121.47 Aligned_cols=133 Identities=15% Similarity=0.111 Sum_probs=89.6
Q ss_pred CCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccC-CCCcchhh
Q 004946 192 GHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEE-SPKTSINA 270 (722)
Q Consensus 192 G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~-~~~~~~g~ 270 (722)
+.+|.++|+|+|+++|. ++++|||++|||+++. +...++.+|++++.|+++||.||+... .|..| ....+.|.
T Consensus 68 ~~~G~alPaAiGaklA~----Pdr~VV~i~GDG~f~~-~g~~el~ta~r~nlpi~iIV~NN~~yG-mt~~Q~~~~t~~g~ 141 (277)
T PRK09628 68 TTHGRAVAYATGIKLAN----PDKHVIVVSGDGDGLA-IGGNHTIHGCRRNIDLNFILINNFIYG-LTNSQTSPTTPKGM 141 (277)
T ss_pred eccccHHHHHHHHHHHC----CCCeEEEEECchHHHH-hhHHHHHHHHHhCcCeEEEEEEChHHh-cceecccCCCCCCc
Confidence 46689999999999984 5899999999999852 455677889999999999999998622 12211 11101110
Q ss_pred hhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHH
Q 004946 271 LSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQE 350 (722)
Q Consensus 271 l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~ 350 (722)
.. .....+.. ....+...+++++|+.++....-.+.++|.+++++
T Consensus 142 ~~---------------------~~~~~g~~--------------~~~~D~~~lA~a~G~~~va~~~v~~~~el~~al~~ 186 (277)
T PRK09628 142 WT---------------------VTAQYGNI--------------DPTFDACKLATAAGASFVARESVIDPQKLEKLLVK 186 (277)
T ss_pred ee---------------------eeccCCCc--------------CCCCCHHHHHHHCCCceEEEEccCCHHHHHHHHHH
Confidence 00 00000000 00123477899999998522222689999999999
Q ss_pred HHhcCCCCCEEEEEEee
Q 004946 351 VASLGSMGPVLVHVVTE 367 (722)
Q Consensus 351 a~~~~~~~P~lI~v~T~ 367 (722)
+.+ .++|++|+|.+.
T Consensus 187 Al~--~~Gp~lIeV~~~ 201 (277)
T PRK09628 187 GFS--HKGFSFFDVFSN 201 (277)
T ss_pred HHh--CCCCEEEEEcCC
Confidence 987 589999999985
No 148
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.18 E-value=3e-10 Score=120.25 Aligned_cols=153 Identities=16% Similarity=0.169 Sum_probs=114.1
Q ss_pred cCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccC-CCCcc
Q 004946 189 FNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEE-SPKTS 267 (722)
Q Consensus 189 ~~~G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~-~~~~~ 267 (722)
+..+..|.+.+.|.|++.|.+..+++.+|||+.|||++-. .-+++|.+|...+.|+++||.||+. ...|+.| +.+.+
T Consensus 66 ~~~~~fg~~~a~a~Gi~~a~~~~~~~~~Vv~~~GDG~~~d-IG~~~L~~a~~r~~ni~~ivlDNe~-Y~nTGgQ~S~~Tp 143 (299)
T PRK11865 66 WIHVAFENAAAVASGIERAVKALGKKVNVVAIGGDGGTAD-IGFQSLSGAMERGHNILYLMYDNEA-YMNTGIQRSGSTP 143 (299)
T ss_pred cchhhhcchHHHHHHHHHHHHHhcCCCeEEEEeCCchHhh-ccHHHHHHHHHcCCCeEEEEECCcc-ccCCCCCCCCCCC
Confidence 3457788999999999999887777889999999998742 4459999999999999999999996 4677775 66677
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHH
Q 004946 268 INALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISV 347 (722)
Q Consensus 268 ~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~a 347 (722)
.|+..++-..- +.. .|.... .-+...++.++|..|+..++-.++.++.++
T Consensus 144 ~Ga~t~tsp~G-------------k~~---~G~~~~--------------kkd~~~Ia~a~g~~YVA~~~~~~~~~l~~~ 193 (299)
T PRK11865 144 FGASTTTSPAG-------------KYS---RGEDRP--------------KKNMPLIMAAHGIPYVATASIGYPEDFMEK 193 (299)
T ss_pred CCcccccCCCC-------------ccc---CCCCCC--------------CCCHHHHHHHcCCCEEEEEeCCCHHHHHHH
Confidence 77654322100 000 000000 012356788899999988888899999999
Q ss_pred HHHHHhcCCCCCEEEEEEee--ccCCCccc
Q 004946 348 LQEVASLGSMGPVLVHVVTE--ENRRAEDT 375 (722)
Q Consensus 348 l~~a~~~~~~~P~lI~v~T~--kG~G~~~a 375 (722)
++++.+ .+||.+||+++. .|+|+++.
T Consensus 194 i~~A~~--~~Gps~I~v~sPC~~~~~~~~~ 221 (299)
T PRK11865 194 VKKAKE--VEGPAYIQVLQPCPTGWGFPPE 221 (299)
T ss_pred HHHHHh--CCCCEEEEEECCCCCCCCCCHH
Confidence 999998 489999999874 56666543
No 149
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=99.17 E-value=3.7e-09 Score=128.57 Aligned_cols=289 Identities=16% Similarity=0.152 Sum_probs=188.5
Q ss_pred chHHHHHHHHHHHHhcCC--CE---EEEecCCCCc--cchH-HHHHhCC------CceeecccchHHHHHHH--------
Q 004946 402 TYDDCFIEALVMEAEKDK--DI---VVVHAGMEMD--LSLQ-LFQEKFP------ERYFDVGMAEQHAVTFS-------- 459 (722)
Q Consensus 402 s~~~a~~~~L~~~~~~d~--~i---v~i~ad~~~~--~~l~-~f~~~~p------~R~~d~GIaE~~av~~A-------- 459 (722)
+=.+|+...+.+..++|. .+ -+++ ...|+ ++++ .|. ++. +-+|++|++|.-+.+++
T Consensus 29 ~G~qAivR~~l~q~~~D~~aG~~ta~~vs-GYpGsP~~~id~~l~-~~~~~l~~~~i~fe~~~NEkvAae~~~GsQ~~~~ 106 (1165)
T PRK09193 29 TGTQALVRLPLLQRERDRAAGLNTAGFVS-GYRGSPLGGLDQELW-RAKKHLAAHDIVFQPGLNEDLAATAVWGSQQVNL 106 (1165)
T ss_pred eHHHHHHHHHHHHhhHHHhcCCCccceEE-eeCCCCHHHHHHHHH-HhhhhhcccceEEeeccCHHHHHHHHhhhccccc
Confidence 446788888777666663 22 2222 23333 2332 233 222 37999999999999999
Q ss_pred -HHHhcCCCeeEEEecHhhHHHHHHHHHHHHhcCCC----C-EEEEEeCCCccCCCCCCcCcHHHHHHhcCCCCcEEEee
Q 004946 460 -AGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQRL----P-VRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAP 533 (722)
Q Consensus 460 -aGlA~~G~~p~~~t~~~Fl~ra~dqi~~~~a~~~l----p-Vv~v~~~~G~~G~dG~TH~~~~d~a~~~~iP~l~V~~P 533 (722)
.|.+..|.+.+++.-.+.+.|+.|.++|. ++... - |++++|..|..+ ..+-|++.-......|| |+.|
T Consensus 107 ~~~a~~~Gv~~l~y~K~pGvn~aaD~l~~~-n~~G~~~~GGvv~v~gDDpg~~S--Sq~eqdSr~~~~~a~iP---vl~P 180 (1165)
T PRK09193 107 FPGAKYDGVFGMWYGKGPGVDRSGDVFRHA-NAAGTSPHGGVLALAGDDHAAKS--STLPHQSEHAFKAAGMP---VLFP 180 (1165)
T ss_pred ccceeeccceEEEecCcCCccccHhHHHHH-HhhcCCCCCcEEEEEecCCCCcc--ccchhhhHHHHHHcCCc---eeCC
Confidence 67789999999999999999999998644 44433 2 555556666522 13344444445556666 9999
Q ss_pred CCHHHHHHHHHHHhhh---CCCCEEEEecCCCc------c------cccCCCCCCCCccccc----cE------------
Q 004946 534 SDEDELVDMVATVASI---DDRPVCFRYPRGAI------V------RTDLPGYRGIPIEEIG----KG------------ 582 (722)
Q Consensus 534 sd~~E~~~~l~~a~~~---~~~Pv~ir~~r~~~------~------~~~~p~~~~~~~~~ig----k~------------ 582 (722)
+|++|++++..++++. .+-||.++...... . ....|. ++.. +.+ +|
T Consensus 181 s~~qE~~d~~~~g~~lSr~~g~pV~lr~~t~v~h~~~~V~~~~~~~~~~~~~--~f~~-~~~g~~~r~~~~p~~~~~~~~ 257 (1165)
T PRK09193 181 ANVQEILDYGLHGWAMSRYSGLWVGMKTVTDVVESSASVDVDPDRVQIVLPE--DFEM-PPGGLNIRWPDPPLEQEARLL 257 (1165)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeeeEEcCCCcccCCCcc--cccC-CcccccccCCCCcHHHHHHHH
Confidence 9999999999999974 44599988643210 0 000110 0000 111 00
Q ss_pred -----------------EEEEe--CCcEEEEEechhhHHHHHHHHHHHhcCCc--------EEEeecCccccchHHHHHH
Q 004946 583 -----------------KVLVE--GKDVALLGYGAMVQNCLKARALLSKLGID--------VTVADARFCKPLDIKLVRE 635 (722)
Q Consensus 583 -----------------~vl~e--G~dv~lva~Gs~v~~aleAa~~L~~~Gi~--------v~Vidl~~lkPld~e~i~~ 635 (722)
++... +.++-||++|.....+++|.+.| |++ +.++.+-+.+|||.+.+++
T Consensus 258 ~~rl~a~~a~a~~n~ln~~~~~~~~~~iGIItsG~~y~~v~eal~~l---g~~~~~~~~~gi~ilKvgm~~PL~~~~i~~ 334 (1165)
T PRK09193 258 DYKLYAALAYARANKLDRVVIDSPNARLGIVAAGKAYLDVRQALRDL---GLDEETAARLGIRLYKVGMVWPLEPQGVRA 334 (1165)
T ss_pred HHHHHHHHHHHHhCCCCeeecCCCCCCEEEEecCccHHHHHHHHHHc---CCChhhhcccCCCEEEeCCCCCCCHHHHHH
Confidence 11111 36799999999999999988765 554 8999999999999999999
Q ss_pred HhcCCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcC-CCHHHHHHHHHHHhhc
Q 004946 636 LCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAG-LTGHHIAATALSLLGR 713 (722)
Q Consensus 636 ~~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~v~~ig~~d~f~~~g~~~~l~~~~g-l~~~~I~~~i~~ll~~ 713 (722)
.+++.+.|+||||... =+-.+|.+.+.+.+. ..+...+|-.| ++|. .++...| |+++.|++.+.+.++.
T Consensus 335 Fa~g~~~vlVVEE~~p-~iE~qlk~~l~~~~~---~~rp~v~GK~~---~~g~--~llp~~gEl~~~~va~~l~~~l~~ 404 (1165)
T PRK09193 335 FAEGLDEILVVEEKRQ-IIEYQLKEELYNWPD---DVRPRVIGKFD---PQGN--WLLPAHGELSPAIIAKAIARRLLK 404 (1165)
T ss_pred HHhcCCEEEEEecCch-HHHHHHHHHHhhccC---CcCceeEeeeC---CCCC--ccCCCcCCcCHHHHHHHHHHHhhh
Confidence 9999999999999863 256666666554432 22223344322 1221 1233333 8999999998776653
No 150
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.15 E-value=1.4e-10 Score=122.04 Aligned_cols=132 Identities=13% Similarity=0.124 Sum_probs=96.2
Q ss_pred CCCcchHHHHHHHHHHHHHcCCCCeEEEEecCC-CcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccC-CCCcchh
Q 004946 192 GHGCNSVSAGLGMAVARDIKGKRECIVTVISNG-TTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEE-SPKTSIN 269 (722)
Q Consensus 192 G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDG-a~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~-~~~~~~g 269 (722)
|.+|.++|+|+|+++|. ++++||+++||| ++. +..++|.+|.+++.|+++||.||+.. ..|..| ++..+.|
T Consensus 59 ~~~G~alp~A~GaklA~----Pd~~VV~i~GDG~~f~--ig~~eL~tA~rrn~~i~vIV~nN~~y-gmtggQ~s~~t~~g 131 (279)
T PRK11866 59 GIHGRVLPIATGVKWAN----PKLTVIGYGGDGDGYG--IGLGHLPHAARRNVDITYIVSNNQVY-GLTTGQASPTTPRG 131 (279)
T ss_pred cccccHHHHHHHHHHHC----CCCcEEEEECChHHHH--ccHHHHHHHHHHCcCcEEEEEEChhh-hhhcccccCCCCCC
Confidence 66799999999999984 589999999999 575 77789999999999999999999862 334332 2222222
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHH
Q 004946 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (722)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~ 349 (722)
..... ...|+.. ...+...+++++|..++......+++++.++++
T Consensus 132 ~~t~~---------------------t~~g~~~--------------~~~d~~~iA~a~G~~~Va~~~~~~~~~l~~~l~ 176 (279)
T PRK11866 132 VKTKT---------------------TPDGNIE--------------EPFNPIALALAAGATFVARGFSGDVKHLKEIIK 176 (279)
T ss_pred ceeec---------------------cCCCCCC--------------CCCCHHHHHHHCCCCEEEEEcCCCHHHHHHHHH
Confidence 11000 0001000 001346789999999887777789999999999
Q ss_pred HHHhcCCCCCEEEEEEee
Q 004946 350 EVASLGSMGPVLVHVVTE 367 (722)
Q Consensus 350 ~a~~~~~~~P~lI~v~T~ 367 (722)
++.+ .+||.+|++.+.
T Consensus 177 ~Al~--~~Gps~I~v~~p 192 (279)
T PRK11866 177 EAIK--HKGFSFIDVLSP 192 (279)
T ss_pred HHHh--CCCCEEEEEeCC
Confidence 9988 589999999864
No 151
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=99.14 E-value=4.3e-10 Score=130.01 Aligned_cols=123 Identities=15% Similarity=0.121 Sum_probs=91.1
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchh
Q 004946 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (722)
Q Consensus 190 ~~G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (722)
+.|++|+++|+|+|+++|. ++++|+++|||+|+ |+.++|.+|.++++|+++||.||+.. |
T Consensus 401 ~~g~mG~glpaaiGa~lA~-----~~r~v~i~GDG~f~--m~~~EL~Ta~r~~lpv~~vV~NN~~y-------------~ 460 (535)
T TIGR03394 401 YYAGMGFGVPAGIGAQCTS-----GKRILTLVGDGAFQ--MTGWELGNCRRLGIDPIVILFNNASW-------------E 460 (535)
T ss_pred ccchhhhHHHHHHHHHhCC-----CCCeEEEEeChHHH--hHHHHHHHHHHcCCCcEEEEEECCcc-------------c
Confidence 3489999999999999984 35668899999996 99999999999999999999888752 2
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHH
Q 004946 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (722)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~ 349 (722)
.+.. .++. ..| .++-.+++..++++||.++..+ .+.++|.++|+
T Consensus 461 ~~~~-~~~~---~~~-----------------------------~~~~~~d~~~lA~a~G~~~~~v---~~~~eL~~al~ 504 (535)
T TIGR03394 461 MLRV-FQPE---SAF-----------------------------NDLDDWRFADMAAGMGGDGVRV---RTRAELAAALD 504 (535)
T ss_pred eeeh-hccC---CCc-----------------------------ccCCCCCHHHHHHHcCCCceEe---CCHHHHHHHHH
Confidence 1100 0000 000 0011235577999999999866 78999999999
Q ss_pred HHHhcCCCCCEEEEEEeecc
Q 004946 350 EVASLGSMGPVLVHVVTEEN 369 (722)
Q Consensus 350 ~a~~~~~~~P~lI~v~T~kG 369 (722)
++.+. .++|++|++.+.+.
T Consensus 505 ~a~~~-~~~p~lIev~i~~~ 523 (535)
T TIGR03394 505 KAFAT-RGRFQLIEAMLPRG 523 (535)
T ss_pred HHHhc-CCCeEEEEEECCcc
Confidence 98763 35588999998543
No 152
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=99.14 E-value=6.6e-10 Score=129.49 Aligned_cols=137 Identities=15% Similarity=0.154 Sum_probs=91.0
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchh
Q 004946 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (722)
Q Consensus 190 ~~G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (722)
+.|++|+++|+|+|+++| .++++|||++|||+|+-+..-+++++|.++++|+++||.||+.. |
T Consensus 428 ~~gsmG~~lp~aiGa~la----~p~~~vv~i~GDG~f~~~~~e~~l~ta~~~~l~~~ivv~NN~~y-------------g 490 (569)
T PRK08327 428 SAGGLGWALGAALGAKLA----TPDRLVIATVGDGSFIFGVPEAAHWVAERYGLPVLVVVFNNGGW-------------L 490 (569)
T ss_pred CCCCCCcchHHHHHHhhc----CCCCeEEEEecCcceeecCcHHHHHHHHHhCCCEEEEEEeCccc-------------c
Confidence 468999999999999987 46899999999999975544457999999999999999999742 2
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcc-cCCChhhhHhhcCceEEeecCCCCHHHHHHHH
Q 004946 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGM-IGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (722)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al 348 (722)
.+.. .++......+... ..... ...+ -.++...++|+||+++..+ ++.++|.+++
T Consensus 491 ~~~~-~~~~~~~~~~~~~-------~~~~~-------------~~~~~~~~d~~~la~a~G~~~~~v---~~~~el~~al 546 (569)
T PRK08327 491 AVKE-AVLEVYPEGYAAR-------KGTFP-------------GTDFDPRPDFAKIAEAFGGYGERV---EDPEELKGAL 546 (569)
T ss_pred cchh-HHhhhCccccccc-------ccccc-------------cccCCCCCCHHHHHHhCCCCceEe---CCHHHHHHHH
Confidence 1100 0000000000000 00000 0000 0134578999999998855 6899999999
Q ss_pred HHHHhc--CCCCCEEEEEEee
Q 004946 349 QEVASL--GSMGPVLVHVVTE 367 (722)
Q Consensus 349 ~~a~~~--~~~~P~lI~v~T~ 367 (722)
+++.+. +.++|++||+.+.
T Consensus 547 ~~a~~~~~~~~gp~liev~v~ 567 (569)
T PRK08327 547 RRALAAVRKGRRSAVLDVIVD 567 (569)
T ss_pred HHHHHHHhcCCCcEEEEEEcc
Confidence 887652 1267999999873
No 153
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=99.11 E-value=2.5e-10 Score=125.30 Aligned_cols=204 Identities=17% Similarity=0.185 Sum_probs=125.6
Q ss_pred ccCCCHHH-HHHHHHHHHHHHHHhH-----hcCC---C-CCCCcchHHHHHHHHhhccCCCCcEEEecCCchHHHHHHHh
Q 004946 91 LKSLTIKE-LKQLAVEIRSELSSIV-----SKTE---K-SLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILT 160 (722)
Q Consensus 91 ~~~l~~~~-l~~la~eiR~~ii~~~-----~~~g---G-h~~~slg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~lt 160 (722)
..+++.++ |++|++.|++.-+..- ..+. . .-...|-+..+.-.+-..+ .|.|.|+.|.|-..|...
T Consensus 319 f~~l~m~~~L~~L~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~pLtq~~~w~~~~~fl-~p~dviiaetGtS~FG~~--- 394 (557)
T COG3961 319 FTNLSMKDALQELAKKIDKRNLSAPPVAYPARTPPTPYPPANEPLTQEWLWNTVQNFL-KPGDVIIAETGTSFFGAL--- 394 (557)
T ss_pred cCCeeHHHHHHHHHHHhhhcccCCCCccCCCCCCCCCCCCCCCcccHHHHHHHHHhhC-CCCCEEEEccccccccce---
Confidence 34455544 6666666665432111 0110 1 1223466666655554445 499999999996444320
Q ss_pred CchhhhhHHHhhCCCCCCCCCCCCCCC-CcCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhh
Q 004946 161 GRRSLIHTLRKKDGISGYTSRSESEYD-PFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAG 239 (722)
Q Consensus 161 Gr~~~~~~~r~~ggl~g~~~~~es~~d-~~~~G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~ 239 (722)
-.-+|+.. .+. ..=.||.|+++|+|+|.++|.+ +++||.++|||++| ++-+++.+.-
T Consensus 395 --------------~~~lP~~~--~~i~Q~lWGSIG~t~pAalGa~~A~~----drR~IL~iGDGs~Q--lTvQEiStmi 452 (557)
T COG3961 395 --------------DIRLPKGA--TFISQPLWGSIGYTLPAALGAALAAP----DRRVILFIGDGSLQ--LTVQEISTMI 452 (557)
T ss_pred --------------eeecCCCC--eEEcccchhhcccccHhhhhhhhcCC----CccEEEEEcCchhh--hhHHHHHHHH
Confidence 11233321 111 1124999999999999999964 89999999999998 9999999999
Q ss_pred hcC-CCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccC
Q 004946 240 YLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIG 318 (722)
Q Consensus 240 ~~~-~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~ 318 (722)
+++ .|+|||+||+||. +-....+.. ..|+++..|
T Consensus 453 R~gl~p~ifvlNN~GYT-IEr~IHg~~----------------~~YNdI~~W---------------------------- 487 (557)
T COG3961 453 RWGLKPIIFVLNNDGYT-IERAIHGPT----------------APYNDIQSW---------------------------- 487 (557)
T ss_pred HcCCCcEEEEEcCCCcE-EEehhcCCC----------------cCccccccc----------------------------
Confidence 999 7899999999982 211111111 223332222
Q ss_pred CChhhhHhhcCceEE-eecCCCCHHHHHHHHHHHHhcCCCCCEEEEEEee
Q 004946 319 PQGSTLFEELGLYYI-GPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTE 367 (722)
Q Consensus 319 ~~~~~lfea~G~~~~-~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~ 367 (722)
+...+.++||..-. ....-..-+++..+++.+.+. .+++.+|||+..
T Consensus 488 -d~~~l~~afg~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~i~lIEv~lp 535 (557)
T COG3961 488 -DYTALPEAFGAKNGEAKFRATTGEELALALDVAFAN-NDRIRLIEVMLP 535 (557)
T ss_pred -chhhhhhhcCCCCceEEEeecChHHHHHHHHHHhcC-CCceEEEEEecC
Confidence 22456677764411 101124567888888887764 578999999974
No 154
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=99.09 E-value=4.1e-09 Score=127.92 Aligned_cols=254 Identities=16% Similarity=0.118 Sum_probs=167.6
Q ss_pred ceeecccchHHH---------HHHHHHHhcCCCeeEEEecHhhHHHHHHHHHHHHh-cCCCC---EEEEEeCCCccCCCC
Q 004946 444 RYFDVGMAEQHA---------VTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVD-QQRLP---VRFVITSAGLVGSDG 510 (722)
Q Consensus 444 R~~d~GIaE~~a---------v~~AaGlA~~G~~p~~~t~~~Fl~ra~dqi~~~~a-~~~lp---Vv~v~~~~G~~G~dG 510 (722)
-+|+.|++|.-+ +.++.|.+..|.+.+++.-.+.+.|+.|.++|... +.... |++++|..|... .
T Consensus 86 i~fe~~~NEklAatav~Gsq~~e~~~~a~~dGv~~lwygK~pGvn~aaD~l~h~n~~gt~~~GGvv~v~gDDpg~~S--S 163 (1186)
T PRK13029 86 VVFQPGVNEELAATAVWGSQQLELDPGAKRDGVFGMWYGKGPGVDRSGDALRHANLAGTSPLGGVLVLAGDDHGAKS--S 163 (1186)
T ss_pred eEEeecCCHHHHHHHhhhhhhcccccceeeccceEEEecCcCCcccchhHHHHhhccccCCCCcEEEEEecCCCCcc--c
Confidence 789999999999 66666667789999999999999999999876542 33332 555556666522 2
Q ss_pred CCcCcHHHHHHhcCCCCcEEEeeCCHHHHHHHHHHHhhh---CCCCEEEEecCCCcc----------c--ccCCC-CCCC
Q 004946 511 PTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASI---DDRPVCFRYPRGAIV----------R--TDLPG-YRGI 574 (722)
Q Consensus 511 ~TH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~---~~~Pv~ir~~r~~~~----------~--~~~p~-~~~~ 574 (722)
.+-|++.-......|| |+.|+|++|++++...+++. .+-||.++....... . ...|. ....
T Consensus 164 q~eqdSr~~~~~a~iP---vl~Ps~~qE~~d~~~~a~~lSr~~g~~V~lr~~t~v~~s~~~V~~~~~r~~~~~p~~f~~~ 240 (1186)
T PRK13029 164 SVAHQSDHTFIAWGIP---VLYPASVQDYLDYGLHGWAMSRYSGLWVGMKCVTEVVESTASVDLDPDRVDIVLPDDFVLP 240 (1186)
T ss_pred cCHHHHHHHHHHcCCc---eeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEeeeeeecceeeecCCcccccCCcccccCC
Confidence 3444555445555666 99999999999999999974 445999986533110 0 00110 0000
Q ss_pred C------c--c-----------------------ccccEEEEEeCCcEEEEEechhhHHHHHHHHHHHhcCCc-------
Q 004946 575 P------I--E-----------------------EIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGID------- 616 (722)
Q Consensus 575 ~------~--~-----------------------~igk~~vl~eG~dv~lva~Gs~v~~aleAa~~L~~~Gi~------- 616 (722)
+ . . ++.+..+-..+.++-||+.|.....+++|.+.| |++
T Consensus 241 ~~g~~~r~~~~p~~~e~~~~~~kl~a~~a~a~~n~ln~~~~~~~~~~~GIItsG~~y~~v~eAl~~l---gl~~~~~~~~ 317 (1186)
T PRK13029 241 PGGLHIRWPDDPLAQEERMLEFKWYAALAYVRANRLNRLVIDGPNPRLGIIAAGKAYLDVRQALRDL---GLDDATCAAL 317 (1186)
T ss_pred ccccccccCCCcHHHHHHHHHHHHHHHHHHHHhCCCCEEeccCCCCCEEEEecCccHHHHHHHHHHc---CCChhhcccc
Confidence 0 0 0 111111001136899999999999999998765 554
Q ss_pred -EEEeecCccccchHHHHHHHhcCCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCC---c----c-ccCC
Q 004946 617 -VTVADARFCKPLDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPD---N----Y-IEHA 687 (722)
Q Consensus 617 -v~Vidl~~lkPld~e~i~~~~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~v~~ig~~d---~----f-~~~g 687 (722)
++++.+.+.+|||.+.+++.++..+.|+||||... =+-.+|.+.+.+.+. ..+...+|-.| . | .+.|
T Consensus 318 gi~ilKvgm~~PL~~~~i~~Fa~g~d~vlVVEE~~p-~iE~qlk~~l~~~~~---~~rp~v~GK~~~~~~~~~~~~~~~g 393 (1186)
T PRK13029 318 GIRLLKVGCVWPLDPQSVREFAQGLEEVLVVEEKRA-VIEYQLKEELYNWRE---DVRPAIFGKFDHRDGAGGEWSVPAG 393 (1186)
T ss_pred CCCEEEeCCCCCCCHHHHHHHHhcCCEEEEEecCch-HHHHHHHHHHhhccC---CcCCeeEeccccccccccccccccc
Confidence 89999999999999999999999999999999863 256666666654432 22223345433 0 0 0111
Q ss_pred CHHHHHHHcC-CCHHHHHHHHHHHh
Q 004946 688 SPTQQLALAG-LTGHHIAATALSLL 711 (722)
Q Consensus 688 ~~~~l~~~~g-l~~~~I~~~i~~ll 711 (722)
. .++...| |+++.|++.+.+.+
T Consensus 394 ~--~llp~~gEL~p~~va~~l~~~l 416 (1186)
T PRK13029 394 R--WLLPAHAELSPALIAKAIARRL 416 (1186)
T ss_pred C--CCCCcccCcCHHHHHHHHHHHH
Confidence 1 1333333 89999999887766
No 155
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=99.08 E-value=6.2e-10 Score=117.99 Aligned_cols=132 Identities=12% Similarity=0.122 Sum_probs=91.2
Q ss_pred CCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCC-cccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccC-CCCcchh
Q 004946 192 GHGCNSVSAGLGMAVARDIKGKRECIVTVISNGT-TMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEE-SPKTSIN 269 (722)
Q Consensus 192 G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa-~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~-~~~~~~g 269 (722)
|.+|.++|+|+|+++| .++++|||++|||+ ++ +...+|.+|.+++.|+++||.||+... .|..| ++..+.|
T Consensus 69 g~mG~alpaAiGaklA----~Pd~~VV~i~GDG~~f~--mg~~eL~tA~r~nl~i~vIV~NN~~yG-mt~~q~s~tt~~g 141 (286)
T PRK11867 69 TIHGRALAIATGLKLA----NPDLTVIVVTGDGDALA--IGGNHFIHALRRNIDITYILFNNQIYG-LTKGQYSPTSPVG 141 (286)
T ss_pred hhhhcHHHHHHHHHHh----CCCCcEEEEeCccHHHh--CCHHHHHHHHHhCCCcEEEEEeCHHHh-hhcCccCCCCCCC
Confidence 6789999999999998 45899999999996 75 677899999999999999999998522 12111 1111111
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHH
Q 004946 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (722)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~ 349 (722)
.... ....|..- ...+...+++++|..++....-.+.++|.++|+
T Consensus 142 ~~~~---------------------~~~~g~~~--------------~~~d~~~lA~a~Ga~~va~~~~~~~~el~~al~ 186 (286)
T PRK11867 142 FVTK---------------------TTPYGSIE--------------PPFNPVELALGAGATFVARGFDSDVKQLTELIK 186 (286)
T ss_pred cccc---------------------cccCCCCC--------------CCCCHHHHHHHCCCcEEEEecCCCHHHHHHHHH
Confidence 0000 00000000 002345688899998875444468999999999
Q ss_pred HHHhcCCCCCEEEEEEee
Q 004946 350 EVASLGSMGPVLVHVVTE 367 (722)
Q Consensus 350 ~a~~~~~~~P~lI~v~T~ 367 (722)
++.+ .++|++|++.+.
T Consensus 187 ~Al~--~~Gp~lIev~~~ 202 (286)
T PRK11867 187 AAIN--HKGFSFVEILQP 202 (286)
T ss_pred HHHh--CCCCEEEEEeCC
Confidence 9987 589999999874
No 156
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=99.03 E-value=2.2e-09 Score=114.33 Aligned_cols=174 Identities=17% Similarity=0.243 Sum_probs=122.0
Q ss_pred HHHHHHHhhccCCCCcEEEe--cCC-chHHHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHH
Q 004946 128 VELTVALHHVFHAPVDKILW--DVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGM 204 (722)
Q Consensus 128 vel~~aL~~vf~~p~D~iv~--d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G~ 204 (722)
-+.+-.|-.+-+.-.|+++. .+| ||.|+...++.+.. |+|- .+| |.|.+|.++|+|+|+
T Consensus 475 Q~vIk~Ldk~t~d~~~kviitTGVGqHQMWAAqfy~w~kP-----~~~~-tSG------------GLGtMGfGLPAAIGA 536 (675)
T KOG4166|consen 475 QYVIKVLDKLTDDTGRKVIITTGVGQHQMWAAQFYNWKKP-----RQWL-TSG------------GLGTMGFGLPAAIGA 536 (675)
T ss_pred HHHHHHHHHhccCcCceEEEeccccHHHHHHHHHhcccCc-----ccee-ecC------------CccccccCcchhhcc
Confidence 34444454444433456555 455 99999877665432 3443 222 568899999999999
Q ss_pred HHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhHH
Q 004946 205 AVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSF 284 (722)
Q Consensus 205 A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~ 284 (722)
.+| .++..||-+-||++|. |+..+|.++.+.+.|+.+++.||..+ |.+. .|
T Consensus 537 sVA----~P~~iViDIDGDaSF~--Mt~~ELat~rq~~~PVKiLiLNNeeq-------------GMVt----------QW 587 (675)
T KOG4166|consen 537 SVA----NPDAIVIDIDGDASFI--MTVQELATIRQENLPVKILILNNEEQ-------------GMVT----------QW 587 (675)
T ss_pred ccc----CcccEEEeccCCceee--eehHhhhhhhhcCCceEEEEecchhh-------------hhHH----------HH
Confidence 998 5699999999999997 99999999999999999999999862 3221 12
Q ss_pred HHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEEEE
Q 004946 285 RQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHV 364 (722)
Q Consensus 285 ~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v 364 (722)
+.+....++-- ..-..|++-.+++++|+...++ ..-++|.+.+++..+ .+||+++++
T Consensus 588 q~lFYe~rysH------------------ThQ~nPnf~klA~AmGikalRV---~K~edL~~k~kefls--TkGPvLleV 644 (675)
T KOG4166|consen 588 QDLFYEARYSH------------------THQENPNFLKLAAAMGIKALRV---TKKEDLREKIKEFLS--TKGPVLLEV 644 (675)
T ss_pred HHHHHHhhhcc------------------ccccCccHHHHHHhcCCchhee---ehHHHHHHHHHHHhC--CCCCeEEEE
Confidence 22211111000 0011355667899999998866 677899999999888 689999999
Q ss_pred EeeccCC
Q 004946 365 VTEENRR 371 (722)
Q Consensus 365 ~T~kG~G 371 (722)
...+-.-
T Consensus 645 ~v~~keh 651 (675)
T KOG4166|consen 645 IVPHKEH 651 (675)
T ss_pred EccCccc
Confidence 8864443
No 157
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=99.02 E-value=1.8e-09 Score=126.25 Aligned_cols=127 Identities=18% Similarity=0.247 Sum_probs=92.5
Q ss_pred cCCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchH-HHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchh
Q 004946 191 AGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQA-YEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (722)
Q Consensus 191 ~G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~-~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (722)
.|.+|.++|+|+|+++|. ++++||+++|||+|. +. .++|.+|.+++.|+++||.||+... .|..|.. +..+
T Consensus 402 ~~~mG~~~~~AiGa~~a~----p~~~Vv~i~GDG~f~--~~g~~eL~tav~~~~~i~~vVlnN~~~g-~~~~q~~-~~~~ 473 (595)
T TIGR03336 402 TLCMGASIGVASGLSKAG----EKQRIVAFIGDSTFF--HTGIPGLINAVYNKANITVVILDNRITA-MTGHQPN-PGTG 473 (595)
T ss_pred eeccCchHHHHhhhhhcC----CCCCEEEEeccchhh--hcCHHHHHHHHHcCCCeEEEEEcCccee-ccCCCCC-CCCC
Confidence 378999999999999884 589999999999996 54 6799999999999999999998521 1211100 0000
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHH
Q 004946 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (722)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~ 349 (722)
. ...+. ..-..+...+++++|+++..+.+-.+++++.++|+
T Consensus 474 -~------------------------~~~~~--------------~~~~~d~~~ia~a~G~~~~~v~~~~~l~~l~~al~ 514 (595)
T TIGR03336 474 -V------------------------TGMGE--------------ATKEISIEELCRASGVEFVEVVDPLNVKETIEVFK 514 (595)
T ss_pred -C------------------------CCCCC--------------cCCCcCHHHHHHHcCCCEEEEeCcCCHHHHHHHHH
Confidence 0 00000 00013457789999999998877778889999999
Q ss_pred HHHhcCCCCCEEEEEEe
Q 004946 350 EVASLGSMGPVLVHVVT 366 (722)
Q Consensus 350 ~a~~~~~~~P~lI~v~T 366 (722)
++.+ .++|++|++..
T Consensus 515 ~a~~--~~gp~li~v~~ 529 (595)
T TIGR03336 515 AALA--AEGVSVIIAKQ 529 (595)
T ss_pred HHHh--cCCCEEEEEcc
Confidence 9987 58999999865
No 158
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=99.02 E-value=1e-09 Score=115.90 Aligned_cols=133 Identities=15% Similarity=0.160 Sum_probs=87.3
Q ss_pred CCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCcc-CCCCcchhh
Q 004946 192 GHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIE-ESPKTSINA 270 (722)
Q Consensus 192 G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~-~~~~~~~g~ 270 (722)
+.+|.++|+|+|+++| .++++|||++|||++. ++....|.+|++++.|+++||.||+... .|.. +++..+.|.
T Consensus 53 t~mG~alPaAiGaklA----~Pd~~VVai~GDG~f~-~mg~~eL~tA~r~nl~I~vIVlNN~~yG-mt~gQ~sp~t~~G~ 126 (287)
T TIGR02177 53 GLHGRALPVATGIKLA----NPHLKVIVVGGDGDLY-GIGGNHFVAAGRRNVDITVIVHDNQVYG-LTKGQASPTLLKGV 126 (287)
T ss_pred cccccHHHHHHHHHHH----CCCCcEEEEeCchHHH-hccHHHHHHHHHhCcCeEEEEEECHHHH-hhhcccccCccCCc
Confidence 4469999999999998 4689999999999973 5778899999999999999999998521 2222 111111111
Q ss_pred hhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHH
Q 004946 271 LSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQE 350 (722)
Q Consensus 271 l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~ 350 (722)
... ....|... ..+.+....+++++|+...+.+ .+.++|.+++++
T Consensus 127 ~~~---------------------~~~~g~~~------------~~~np~~~a~A~g~g~va~~~~--~~~~eL~~ai~~ 171 (287)
T TIGR02177 127 KTK---------------------SLPYPNIQ------------DPVNPLLLAIALGYTFVARGFS--GDVAHLKEIIKE 171 (287)
T ss_pred cee---------------------ecccCccC------------CCCCHHHHHHhCCCCeEEEEec--CCHHHHHHHHHH
Confidence 000 00000000 0001112345566666555422 689999999999
Q ss_pred HHhcCCCCCEEEEEEee
Q 004946 351 VASLGSMGPVLVHVVTE 367 (722)
Q Consensus 351 a~~~~~~~P~lI~v~T~ 367 (722)
+.+ .++|++|+|.+.
T Consensus 172 Al~--~~GpslIeV~~p 186 (287)
T TIGR02177 172 AIN--HKGYALVDILQP 186 (287)
T ss_pred HHh--CCCCEEEEEeCC
Confidence 987 589999999873
No 159
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=98.90 E-value=9e-08 Score=104.84 Aligned_cols=450 Identities=14% Similarity=0.141 Sum_probs=262.8
Q ss_pred CcEEEecCCchHHHHHHHhCc--hhhhhHHHhhCCCCCCCCCCCCC----------CCCcCcC------------CCcch
Q 004946 142 VDKILWDVGEQTYAHKILTGR--RSLIHTLRKKDGISGYTSRSESE----------YDPFNAG------------HGCNS 197 (722)
Q Consensus 142 ~D~iv~d~GH~~y~h~~ltGr--~~~~~~~r~~ggl~g~~~~~es~----------~d~~~~G------------~~G~~ 197 (722)
.|.| ....|+.-. -++|+. ......||+..|.+-||...+.. .|.+|.| |+-..
T Consensus 211 e~vi-igmpHRGRl-nLlt~Ll~fpP~~mFRK~~G~sEFpE~~~A~gDVlSHl~sS~dykg~~~~lhvtMlpNPSHLEAv 288 (913)
T KOG0451|consen 211 EHVI-IGMPHRGRL-NLLTALLNFPPAKMFRKLSGASEFPEDIEAMGDVLSHLHSSEDYKGLGKKLHVTMLPNPSHLEAV 288 (913)
T ss_pred ceEE-EeccccCcc-hHHHHHhcCCHHHHHHHhcCcccCchhhhHHHHHHHHhhhhhhhcccCCceEEEecCChhhhhcc
Confidence 4544 445576521 133332 33457789988899998754322 2344433 45555
Q ss_pred HHHHHHHHHHHHHc---C---C------CCeEEE--EecCCCcc-cchHHHHHHHhhh--cC-CCEEEEEECCCCCCCCC
Q 004946 198 VSAGLGMAVARDIK---G---K------RECIVT--VISNGTTM-AGQAYEAMSNAGY--LD-SNMIVILNDSRHSLHPK 259 (722)
Q Consensus 198 ls~A~G~A~A~~l~---~---~------~~~Vv~--viGDGa~~-~G~~~EAln~A~~--~~-~plivIv~dN~~~s~~t 259 (722)
-|.|+|-+-++.-. | + ..+|++ +-||++|. +|.+||.+|.+-. .. .--+-+|.||+.. --|
T Consensus 289 NPVAmGKtR~rqqsr~~Gdyspd~sa~~Gd~Vlnv~vHGDaaF~GQGiv~E~~~ls~~PHFrvGGsvHLivNNQvg-fTt 367 (913)
T KOG0451|consen 289 NPVAMGKTRSRQQSRGEGDYSPDSSAPFGDHVLNVIVHGDAAFAGQGIVQECLNLSYVPHFRVGGSVHLIVNNQVG-FTT 367 (913)
T ss_pred CchhhcchhHHHHhhcCCCCCCCCcCCCCCceEEEEEecchhhccCcccHHHHhhccCCceeecceEEEEeccccc-ccC
Confidence 56788877766421 1 1 234555 56999986 7999999988743 33 3344455566641 111
Q ss_pred ccCCCCcchhhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCC
Q 004946 260 IEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGH 339 (722)
Q Consensus 260 ~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGh 339 (722)
.. ..|.-+. | -..+.+++++.++ .|+|.
T Consensus 368 p~-----~rGRSs~--------------------------------------y--------csDiaK~~~~pvi-HVNGD 395 (913)
T KOG0451|consen 368 PG-----DRGRSSA--------------------------------------Y--------CSDIAKSIQAPVI-HVNGD 395 (913)
T ss_pred cc-----cccccch--------------------------------------h--------hhHHHHHhCCCEE-EeCCC
Confidence 00 1121100 0 1346788899998 89999
Q ss_pred CHHHHHHHHHHHHhcC--CCCCEEEEEEeeccCCCccccc-------------------------------------cc-
Q 004946 340 NIEDLISVLQEVASLG--SMGPVLVHVVTEENRRAEDTQK-------------------------------------SE- 379 (722)
Q Consensus 340 d~~~l~~al~~a~~~~--~~~P~lI~v~T~kG~G~~~ae~-------------------------------------~~- 379 (722)
|++++.++-+.+...+ -.+-++|.+...+-+|.-.... .|
T Consensus 396 ~PEevvraTrLAf~Yqr~FRKDvfIdL~CfRrwgHnelddp~ftspvmyk~v~aReSvPdlya~~L~~eg~~tee~vkE~ 475 (913)
T KOG0451|consen 396 DPEEVVRATRLAFRYQREFRKDVFIDLNCFRRWGHNELDDPTFTSPVMYKEVEARESVPDLYAQQLAKEGVLTEEKVKEM 475 (913)
T ss_pred CHHHHHHHHHHHHHHHHHhhhhheeehHHHHHhccccccCccccChhHHHHHHhhhcccHHHHHHHHhcccccHHHHHHH
Confidence 9999998765543321 2457888877777777511100 00
Q ss_pred ----------chhh-ccCCCC--------------------CCCCCCC-----------C--------------------
Q 004946 380 ----------AIEK-QQEGAS--------------------DSNSLPF-----------G-------------------- 397 (722)
Q Consensus 380 ----------~~~~-~H~~~~--------------------~~tg~~~-----------~-------------------- 397 (722)
...+ -|..++ -.||... +
T Consensus 476 ~~~y~~~Ln~eL~~~~~y~Pp~~~~~~~W~gf~qapk~it~WdTGv~~dLLrfiG~~SV~vPedf~~H~HLlKtHv~sRm 555 (913)
T KOG0451|consen 476 RDEYMKYLNEELALAPAYQPPPSYFEKQWTGFQQAPKEITYWDTGVDYDLLRFIGQQSVTVPEDFNIHPHLLKTHVNSRM 555 (913)
T ss_pred HHHHHHHHHHHHhcCCccCCCchhhHHhhhhhccChhhhcccccCcchHHHHHhccCceecchhccccHHHHHHHHHHHH
Confidence 0000 122222 0122110 0
Q ss_pred -----CCccchHHHHHHHHHHHHhcCCCEEEEecCCCCccch-----------HH----HHHhCC--C---ceeecccch
Q 004946 398 -----NYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL-----------QL----FQEKFP--E---RYFDVGMAE 452 (722)
Q Consensus 398 -----~~~~s~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~l-----------~~----f~~~~p--~---R~~d~GIaE 452 (722)
.....|..|=+-++-.++...-++.+-+.|++.|+=- +. +-.--+ + -+-|..++|
T Consensus 556 ~Km~~G~kiDWaTAEAlA~GSll~qG~nVRiSGqDVGRGTFshRHAM~VdQ~Td~~~IPLN~m~~~qkg~LEvans~LSE 635 (913)
T KOG0451|consen 556 KKMENGVKIDWATAEALAIGSLLYQGHNVRISGQDVGRGTFSHRHAMLVDQQTDEMFIPLNSMEGGQKGKLEVANSILSE 635 (913)
T ss_pred HHHhcCCccchHHHHHHHHHHHHhccCceeeeccccCcccccccceeeeeccccceeeeccccCCCcCCeeEeccccccH
Confidence 1223466666667777888888999999999977511 00 000001 1 244778999
Q ss_pred HHHHHHHHHHhcCC--CeeEEEe-cHhhHHHHHHHHHHHHhc--------CCCCEEEEEeCCCccCCCCCCcCcHHHHHH
Q 004946 453 QHAVTFSAGLACGG--LKPFCII-PSAFLQRAYDQVVNDVDQ--------QRLPVRFVITSAGLVGSDGPTQCGAFDITF 521 (722)
Q Consensus 453 ~~av~~AaGlA~~G--~~p~~~t-~~~Fl~ra~dqi~~~~a~--------~~lpVv~v~~~~G~~G~dG~TH~~~~d~a~ 521 (722)
.+.+|+-.||+.+. ..++.+. |.+|+.-| ||+-|.-+ ..--+++...+ |+.| -||-|+..---.|
T Consensus 636 EAvLGFEyGmsienP~~L~iWEAQFGDFfNGA--QIIiDTFi~sgE~KWl~ssglvmLLPH-GyDG-AgpeHSSCRiERF 711 (913)
T KOG0451|consen 636 EAVLGFEYGMSIENPNNLIIWEAQFGDFFNGA--QIIIDTFIVSGETKWLESSGLVMLLPH-GYDG-AGPEHSSCRIERF 711 (913)
T ss_pred hhhhhhhcccccCCcccceeehhhhcccccCc--eEEEeeeecccchhhhhhCCeEEEccC-CcCC-CCCccchhhHHHH
Confidence 99999999999985 4566654 88887654 55544321 12234555544 5444 3788987643334
Q ss_pred hcC-----------CCCcEEEeeCCHHHHHHHHHHHhh-hCCCCEEEEecCCCcccccCCCC--------CCCCcc-ccc
Q 004946 522 MSC-----------LPNMIVMAPSDEDELVDMVATVAS-IDDRPVCFRYPRGAIVRTDLPGY--------RGIPIE-EIG 580 (722)
Q Consensus 522 ~~~-----------iP~l~V~~Psd~~E~~~~l~~a~~-~~~~Pv~ir~~r~~~~~~~~p~~--------~~~~~~-~ig 580 (722)
+.- --||.|+-|.++.+.+.+++.-+. +..+|.++.-|+..+. +|.. ++..+. .+|
T Consensus 712 LQlCDS~E~~vDGd~VNm~vvnPTTpAQYfHlLRRQ~vrNfRKPLiVv~PK~LLR---lPaA~ST~~ef~PGTtf~nVig 788 (913)
T KOG0451|consen 712 LQLCDSKETSVDGDSVNMHVVNPTTPAQYFHLLRRQLVRNFRKPLIVVAPKTLLR---LPAATSTHEEFQPGTTFHNVIG 788 (913)
T ss_pred HHHhccccccCCCcceeEEEeCCCCHHHHHHHHHHHHHHhccCceEEechHHHhh---CcchhhhHhhcCCCcccccccc
Confidence 321 237899999999999999987664 4567999887775421 2210 111110 122
Q ss_pred cEEEEEeCCcEEEEEechhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcCCC----eEEEEcCCC-CCCh
Q 004946 581 KGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHT----FLITVEEGS-IGGF 654 (722)
Q Consensus 581 k~~vl~eG~dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~~----~vvvvEe~~-~gG~ 654 (722)
.-..-.+.-+-+|+++|.-.....++.+.+..+. .+.++.+-.+-|||.+.+...+++++ .|..-||.. .|-|
T Consensus 789 d~~~~p~kvkkvifcSGKH~y~l~k~Re~rgakd-~~AI~RvE~LCPFPi~~LQa~l~kY~~vqdfvWSQEEprNmGaW 866 (913)
T KOG0451|consen 789 DTIAKPEKVKKVIFCSGKHYYTLAKEREKRGAKD-TVAILRVESLCPFPIQELQAQLAKYGNVQDFVWSQEEPRNMGAW 866 (913)
T ss_pred ccccChhHheEEEEecCcchhhHHHHHHhccccc-ceeeEehhhcCCCchHHHHHHHHhcCChhhhcccccccccCCcc
Confidence 2111111225578999998887776666553322 37899999999999999988777664 456678876 3544
No 160
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=98.88 E-value=9.7e-09 Score=132.21 Aligned_cols=131 Identities=13% Similarity=0.133 Sum_probs=92.1
Q ss_pred cCCCcc--hHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhc--CCCEEEEEECCCCCCCCCccCCCCc
Q 004946 191 AGHGCN--SVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYL--DSNMIVILNDSRHSLHPKIEESPKT 266 (722)
Q Consensus 191 ~G~~G~--~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~--~~plivIv~dN~~~s~~t~~~~~~~ 266 (722)
-|.+|. ++|+|+|+++|. +++|||++|||+|+ |..++|.+|.++ ++|+++||.||+..
T Consensus 758 ~G~mG~~G~lpaAIGaala~-----~r~Vv~i~GDGsF~--m~~~EL~Ta~r~~~~lpi~iVV~NN~gg----------- 819 (1655)
T PLN02980 758 RGASGIDGLLSTAIGFAVGC-----NKRVLCVVGDISFL--HDTNGLSILSQRIARKPMTILVINNHGG----------- 819 (1655)
T ss_pred CCccchhhhHHHHHHHhhcC-----CCCEEEEEehHHHH--hhhhHHHHhhcccCCCCEEEEEEeCCCc-----------
Confidence 477887 699999999883 78999999999996 999999999985 89999888888741
Q ss_pred chhhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHH
Q 004946 267 SINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLIS 346 (722)
Q Consensus 267 ~~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~ 346 (722)
|.. ..+...+... +.. ++.+......++...++++||+++..+ .+.++|.+
T Consensus 820 --gi~-~~l~~~~~~~--~~~---------------------~~~~~~~~~~~df~~lA~a~G~~~~rV---~~~~eL~~ 870 (1655)
T PLN02980 820 --AIF-SLLPIAKRTE--PRV---------------------LNQYFYTSHDISIENLCLAHGVRHLHV---GTKSELED 870 (1655)
T ss_pred --Hhh-hcCccCCCCc--chh---------------------HHHHhcCCCCCCHHHHHHHcCCceeec---CCHHHHHH
Confidence 111 0000000000 000 000000001245678999999999966 78999999
Q ss_pred HHHHHHhcCCCCCEEEEEEeeccC
Q 004946 347 VLQEVASLGSMGPVLVHVVTEENR 370 (722)
Q Consensus 347 al~~a~~~~~~~P~lI~v~T~kG~ 370 (722)
+|+++.+ .++|++|||.|.+..
T Consensus 871 aL~~a~~--~~~p~lIEV~t~~~~ 892 (1655)
T PLN02980 871 ALFTSQV--EQMDCVVEVESSIDA 892 (1655)
T ss_pred HHHHhhc--cCCCEEEEEecChhh
Confidence 9998886 589999999997543
No 161
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=98.82 E-value=1.5e-08 Score=104.28 Aligned_cols=115 Identities=18% Similarity=0.161 Sum_probs=85.7
Q ss_pred eeecccchHHHHHHHHHHhcCCCeeEEEecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCccCCCCCCcCcHHHHHHhcC
Q 004946 445 YFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSC 524 (722)
Q Consensus 445 ~~d~GIaE~~av~~AaGlA~~G~~p~~~t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~d~a~~~~ 524 (722)
.+-..-+|.++++++.|+|++|.|.+++|.+..+..+.|.+ ..++..++|++++...++..+..+++|+...|+.+.+.
T Consensus 38 ~~~~~E~E~~A~~~~~GAs~aG~ra~t~ts~~Gl~lm~e~l-~~a~~~~~P~V~~~~~R~g~~~g~~~~~~q~D~~~~~d 116 (230)
T PF01855_consen 38 KVVQAESEHAAMEAAIGASAAGARAMTATSGPGLNLMAEPL-YWAAGTELPIVIVVVQRAGPSPGLSTQPEQDDLMAARD 116 (230)
T ss_dssp EEEE-SSHHHHHHHHHHHHHTT--EEEEEECCHHHHHCCCH-HHHHHTT--EEEEEEEB---SSSB--SB-SHHHHHTTT
T ss_pred EEEEecchHHHHHHHHHHHhcCCceEEeecCCcccccHhHH-HHHHHcCCCEEEEEEECCCCCCCCcCcCChhHHHHHHh
Confidence 66777999999999999999999999999999999999886 67789999988877443333444789999999877774
Q ss_pred CCCcEEEeeCCHHHHHHHHHHHhhhC---CCCEEEEecCC
Q 004946 525 LPNMIVMAPSDEDELVDMVATVASID---DRPVCFRYPRG 561 (722)
Q Consensus 525 iP~l~V~~Psd~~E~~~~l~~a~~~~---~~Pv~ir~~r~ 561 (722)
-++.|++|+|+||++++...|++.. ..||+++.+..
T Consensus 117 -~~~~vl~p~~~QEa~d~~~~A~~lAe~~~~PViv~~Dg~ 155 (230)
T PF01855_consen 117 -SGWIVLAPSSPQEAYDMTLIAFNLAEKYQTPVIVLFDGF 155 (230)
T ss_dssp -SS-EEEE--SHHHHHHHHHHHHHHHHHHTSEEEEEEECC
T ss_pred -cCeEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechh
Confidence 5789999999999999999998754 45999987654
No 162
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=98.80 E-value=9.7e-08 Score=103.34 Aligned_cols=179 Identities=16% Similarity=0.212 Sum_probs=122.6
Q ss_pred CCcchHHHHHHHHhhccCCCCcEEEecCCch-HHHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHH
Q 004946 122 KSSLAAVELTVALHHVFHAPVDKILWDVGEQ-TYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSA 200 (722)
Q Consensus 122 ~~slg~vel~~aL~~vf~~p~D~iv~d~GH~-~y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~ 200 (722)
-+-..+.+++-++..... +++.+|-..|-- .=.|+++.- +.| .+-|-++|...+|+-++-
T Consensus 392 nt~ptq~~vigav~~~~~-~~svvvcAAGsLPGdLhkLW~~---------------~~p---~~YH~EYgfSCMGYEiaG 452 (617)
T COG3962 392 NTLPTQTQVIGAVQRTIS-DDSVVVCAAGSLPGDLHKLWRA---------------GVP---GTYHLEYGFSCMGYEIAG 452 (617)
T ss_pred ccCccchhHHHHHHhhcC-CCcEEEEeCCCCcHHHHHHhcc---------------CCC---Cceeeeeccccccccccc
Confidence 455566666666654332 456666666531 133444321 111 134556788889999999
Q ss_pred HHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhh
Q 004946 201 GLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQS 280 (722)
Q Consensus 201 A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~ 280 (722)
++|+.+| .+++.|++++|||++. |..-+|.++..++..+++++.||.. +|.+ ++||.
T Consensus 453 ~lG~K~a----~pdreV~vmVGDGSym--MlnSEL~Tsv~~g~Ki~Vvl~DN~G-------------yGCI----n~LQm 509 (617)
T COG3962 453 GLGAKAA----EPDREVYVMVGDGSYM--MLNSELATSVMLGKKIIVVLLDNRG-------------YGCI----NRLQM 509 (617)
T ss_pred ccccccC----CCCCeEEEEEcccchh--hhhHHHHHHHHcCCeEEEEEECCCC-------------cchh----hhhhh
Confidence 9998754 6799999999999997 8999999999999999999999975 3322 22321
Q ss_pred ----hhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCC
Q 004946 281 ----SKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGS 356 (722)
Q Consensus 281 ----~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~ 356 (722)
.+.+..+|..... ..++.-+++..++++|.+...+ +++++|.++|+++|+ .
T Consensus 510 ~~Gg~sf~~~~r~~~~e--------------------~~~~~vDfA~~A~s~Ga~~~kv---~~i~eL~aAL~~Ak~--~ 564 (617)
T COG3962 510 ATGGASFNNLLRDTDHE--------------------EEILQVDFAAHAESYGAKAYKV---GTIEELEAALADAKA--S 564 (617)
T ss_pred hcCcchhhhhhhhhccc--------------------CCCCcccHHHHHhhcCceeEec---CCHHHHHHHHHHHHh--C
Confidence 1112222222110 1122335677899999999866 799999999999998 5
Q ss_pred CCCEEEEEEee
Q 004946 357 MGPVLVHVVTE 367 (722)
Q Consensus 357 ~~P~lI~v~T~ 367 (722)
.++++|++.|.
T Consensus 565 ~~ttvi~I~t~ 575 (617)
T COG3962 565 DRTTVIVIDTD 575 (617)
T ss_pred CCCEEEEEecC
Confidence 89999999985
No 163
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=98.57 E-value=2.4e-06 Score=93.44 Aligned_cols=252 Identities=16% Similarity=0.114 Sum_probs=133.7
Q ss_pred CCCCCcccCcceeeeccccCCCCCCccCCCCCCccccCCCCc------------hh--ccCCCHHHHHHHHHHHHHHHHH
Q 004946 47 PSSSSITSSKLVTVSRICALPDIDDFFWDKEPTPILDLVENP------------LR--LKSLTIKELKQLAVEIRSELSS 112 (722)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~p------------~~--~~~l~~~~l~~la~eiR~~ii~ 112 (722)
||+=+ +++|..-|.|+..+... +| -||..+++-.|..- .- -.+-..++|.+.+++=+....+
T Consensus 296 ~Pk~~-kd~KfIqvd~n~Eel~~-n~--~k~~v~i~gDig~~~~~L~e~l~~~~~~~~~s~~w~k~Lrek~~~ne~~~~~ 371 (571)
T KOG1185|consen 296 PPKWS-KDVKFIQVDINPEELGN-NF--VKPDVAIQGDIGLFVLQLVEELQDQPWTWGPSTDWVKELREKDKQNEAAVEE 371 (571)
T ss_pred CCccC-CCceEEEEeCCHHHHhc-cc--CCCCceeeecHHHHHHHHHHHhcCCCcccCCchhHHHHHHHHHHhhHHHHHH
Confidence 44443 45688888777664322 22 35555554333221 11 1123445666666666665555
Q ss_pred hHhcCCCCCCCcchHHHHHHHHhhccC-CC-CcEEEecCCchHHHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcC
Q 004946 113 IVSKTEKSLKSSLAAVELTVALHHVFH-AP-VDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFN 190 (722)
Q Consensus 113 ~~~~~gGh~~~slg~vel~~aL~~vf~-~p-~D~iv~d~GH~~y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~ 190 (722)
...+.+-. |-. ..+||.+=. -| +|.|+.+-|--. +-.| |+.- .+-.|.+. .|.=.
T Consensus 372 ~~~~~~~p----LN~---~~~~~~vre~L~~~d~ilVsEGant----mdig--------r~~l-~~~~Pr~r---LDaGt 428 (571)
T KOG1185|consen 372 KAAKKSTP----LNY---YQVLQTVRELLPNDDTILVSEGANT----MDIG--------RTLL-PPRGPRRR---LDAGT 428 (571)
T ss_pred HhhccCCC----CcH---HHHHHHHHHhcCCCCcEEEecCCcc----hhhh--------hhhc-cCCCcccc---cCCcc
Confidence 55544333 222 222332211 14 777777655311 1111 1111 11123221 22112
Q ss_pred cCCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhh
Q 004946 191 AGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINA 270 (722)
Q Consensus 191 ~G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~ 270 (722)
.|.+|-|++.|++.|++ .+++.|||+-||++| |...=++.++..+++|+++||.||+.. +|.
T Consensus 429 fgTMGVG~Gfalaaa~~----~P~~~V~~veGDsaF--GfSaME~ET~vR~~Lpvv~vV~NN~Gi------------yg~ 490 (571)
T KOG1185|consen 429 FGTMGVGLGFALAAALA----APDRKVVCVEGDSAF--GFSAMELETFVRYKLPVVIVVGNNNGI------------YGL 490 (571)
T ss_pred ccccccchhHHHHHHhh----CCCCeEEEEecCccc--CcchhhHHHHHHhcCCeEEEEecCCcc------------ccc
Confidence 36677777776666666 479999999999999 677778899999999988888766432 111
Q ss_pred hhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHH
Q 004946 271 LSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQE 350 (722)
Q Consensus 271 l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~ 350 (722)
.. ..|.++++ +.....-.+. .. .-......+.++||-+.... ..+++|..++++
T Consensus 491 d~---------~~~~~I~e---~~~~~~~p~~-~l----------~~~~rY~~v~ka~G~kG~~v---~t~~el~~~l~~ 544 (571)
T KOG1185|consen 491 DD---------DGWKQISE---QDPTLDLPPT-AL----------LANTRYDKVAKAFGGKGYFV---STVEELLAALQQ 544 (571)
T ss_pred Cc---------ccHHHHhh---cCcccCCCcc-cc----------cccccHHHHHHHcCCCceee---CCHHHHHHHHHH
Confidence 00 11222220 0000000000 00 00011245778888775534 589999999998
Q ss_pred HHhcCCCCCEEEEEEeeccC
Q 004946 351 VASLGSMGPVLVHVVTEENR 370 (722)
Q Consensus 351 a~~~~~~~P~lI~v~T~kG~ 370 (722)
+... +++|++|.+...+..
T Consensus 545 a~q~-~~~psvINVlI~p~~ 563 (571)
T KOG1185|consen 545 ACQD-TDKPSVINVLIGPTA 563 (571)
T ss_pred HHhc-CCCCeEEEEEecccc
Confidence 8774 569999999876553
No 164
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=98.48 E-value=1.1e-05 Score=95.02 Aligned_cols=203 Identities=20% Similarity=0.258 Sum_probs=129.2
Q ss_pred ceeecccchHHHHHHHHHHhcCCCeeEE---EecHhhH---HHHHHHHHHHHh---cCCCCEEEEEeCCCccCCCCCCcC
Q 004946 444 RYFDVGMAEQHAVTFSAGLACGGLKPFC---IIPSAFL---QRAYDQVVNDVD---QQRLPVRFVITSAGLVGSDGPTQC 514 (722)
Q Consensus 444 R~~d~GIaE~~av~~AaGlA~~G~~p~~---~t~~~Fl---~ra~dqi~~~~a---~~~lpVv~v~~~~G~~G~dG~TH~ 514 (722)
..+|.+.+|.+++++=.|.+..--+.++ +-|.+|. |.-+||.+..-- .....+++...+ |.-| .||.|+
T Consensus 628 ~v~nS~LSEeAvlgFEYGYs~~~p~~lvlWEAQFGDFaNgAQvviDQfisSge~KW~r~sgLv~lLPH-gyEG-QGPEHS 705 (906)
T COG0567 628 EVINSPLSEEAVLGFEYGYSLANPKTLVLWEAQFGDFANGAQVVIDQFISSGEQKWGRMSGLVMLLPH-GYEG-QGPEHS 705 (906)
T ss_pred EEEechhhHHHHHhhhhhhhhcCCchhhhhhhhhcccccCCeeeeccccccHHHHHHHhcCceEEccC-CCCC-CCCcCc
Confidence 4679999999999999999998544333 3377775 677887653321 123345666655 3334 589999
Q ss_pred cHHHHHHhc--CCCCcEEEeeCCHHHHHHHHHHHhh-hCCCCEEEEecCCCcccccCCCCCCCCcccccc--EE-EEEe-
Q 004946 515 GAFDITFMS--CLPNMIVMAPSDEDELVDMVATVAS-IDDRPVCFRYPRGAIVRTDLPGYRGIPIEEIGK--GK-VLVE- 587 (722)
Q Consensus 515 ~~~d~a~~~--~iP~l~V~~Psd~~E~~~~l~~a~~-~~~~Pv~ir~~r~~~~~~~~p~~~~~~~~~igk--~~-vl~e- 587 (722)
....=.++. .--||+|..|+++...+.+++.-+. ...+|.++..|+......... .+++++.+ .+ ++.+
T Consensus 706 SaRlER~LQLcaE~NmqV~~pstpaq~fHlLRrq~~r~~rkPLiimtPKslLR~~~a~----S~~~el~~~~F~~vl~d~ 781 (906)
T COG0567 706 SARLERFLQLCAENNMQVVVPSTPAQYFHLLRRQALRDFRKPLIVMTPKSLLRHKLAV----SSLEELTEGTFQPVLEDI 781 (906)
T ss_pred cchhHHHHHhhHHhCCEEEecCcHHHHHHHHHHHHhhcccCceEecChhhhhhccccC----Cchhhhchhhhhhhhccc
Confidence 764433433 2348999999999999999986544 345799999888753211000 00101111 11 1211
Q ss_pred ---C--CcEEEEEechhhHHHHHHHHHHHhcC-CcEEEeecCccccchHHHHHHHhcCC----CeEEEEcCCC-CCChH
Q 004946 588 ---G--KDVALLGYGAMVQNCLKARALLSKLG-IDVTVADARFCKPLDIKLVRELCQNH----TFLITVEEGS-IGGFG 655 (722)
Q Consensus 588 ---G--~dv~lva~Gs~v~~aleAa~~L~~~G-i~v~Vidl~~lkPld~e~i~~~~~~~----~~vvvvEe~~-~gG~g 655 (722)
+ -+.+++|+|-+.....+.. ++.| .++-++.+..|.||+.+.+.+.++++ ..+..=||-. .|.|.
T Consensus 782 ~~~~~~v~rvvlcSGKvyydl~~~r---~~~g~~dvaiiRiEqLyPfP~~~l~~~l~~y~~~~e~vW~QEEp~N~Gaw~ 857 (906)
T COG0567 782 DELDPKVKRVVLCSGKVYYDLLEQR---EKDGRDDVAIVRIEQLYPFPAKALAALLAKYPNVKEFVWCQEEPKNQGAWY 857 (906)
T ss_pred cccccceeeEEeeccchHHHHHHHH---hhcCCcceeEEeeecccCchHHHHHHHHHhccccccccccccCCCccccHH
Confidence 1 2456778888776555443 4444 47889999999999999998887654 2344456654 57665
No 165
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=98.45 E-value=2.2e-07 Score=102.20 Aligned_cols=58 Identities=22% Similarity=0.233 Sum_probs=51.1
Q ss_pred cCCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcC-CCEEEEEECCCC
Q 004946 191 AGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLD-SNMIVILNDSRH 254 (722)
Q Consensus 191 ~G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~-~plivIv~dN~~ 254 (722)
.||.|+++++++|.|+|. ++++|+.++|||+++ ++.+.+.++.+++ .|.+|++||+||
T Consensus 414 wgsIG~svga~lG~a~a~----~e~rvilfiGDGs~q--lTvQeiStmir~gl~~~if~~NN~GY 472 (561)
T KOG1184|consen 414 WGSIGWSVGATLGYAQAA----PEKRVILFIGDGSFQ--LTVQEISTMIRWGLKPIIFLINNGGY 472 (561)
T ss_pred Eeeccccchhhhhhhhcc----CCceEEEEecCccce--eeHHHHHHHHhcCCCcEEEEEeCCce
Confidence 489999999999999995 479999999999998 8899999999999 556666677776
No 166
>KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=98.42 E-value=4.1e-05 Score=86.54 Aligned_cols=243 Identities=15% Similarity=0.180 Sum_probs=153.6
Q ss_pred HHHHhcCCCEEEEecCCCCccc------h----------HHHHHhCCC----ceeecccchHHHHHHHHHHhcCC--Cee
Q 004946 412 VMEAEKDKDIVVVHAGMEMDLS------L----------QLFQEKFPE----RYFDVGMAEQHAVTFSAGLACGG--LKP 469 (722)
Q Consensus 412 ~~~~~~d~~iv~i~ad~~~~~~------l----------~~f~~~~p~----R~~d~GIaE~~av~~AaGlA~~G--~~p 469 (722)
-.++++.-.+-+-+.|+..||= | ..+..-.|+ -+.|..++|-+.+||-.|.+++- ..+
T Consensus 660 gsLl~EG~hVRlSGQDVERGTFShRH~VLHDQ~~d~~~y~PlnhL~~~Qa~ytV~NSSLSEygVLGFElGYsm~sPNaLV 739 (1017)
T KOG0450|consen 660 GSLLKEGIHVRLSGQDVERGTFSHRHHVLHDQEVDKRTYIPLNHLWPNQAPYTVCNSSLSEYGVLGFELGYSMASPNALV 739 (1017)
T ss_pred HHHHhcCceEEeecccccccccccchhhhcccccCcceecchhhcCCCCCceeeeccchhhhheecceecccccCCCceE
Confidence 3455666678888888886651 1 012222233 46699999999999999999984 555
Q ss_pred EEEe-cHhhH---HHHHHHHHHHHh---cCCCCEEEEEeCCCccCCCCCCcCcHHHHHHhc-------------------
Q 004946 470 FCII-PSAFL---QRAYDQVVNDVD---QQRLPVRFVITSAGLVGSDGPTQCGAFDITFMS------------------- 523 (722)
Q Consensus 470 ~~~t-~~~Fl---~ra~dqi~~~~a---~~~lpVv~v~~~~G~~G~dG~TH~~~~d~a~~~------------------- 523 (722)
+.+- |.+|. |..+||++..-- ..+..+|+...+ |.-| .||-|+..---.|+.
T Consensus 740 lWEAQFGDFaNtAQ~IiDQFIssGqaKW~rqsGlVllLPH-GyeG-~GPEHSSaR~ERfLQm~nddp~~~p~~~~~~~~Q 817 (1017)
T KOG0450|consen 740 LWEAQFGDFANTAQCIIDQFISSGQAKWVRQSGLVLLLPH-GYEG-MGPEHSSARPERFLQMSNDDPDVFPDEEEFLQRQ 817 (1017)
T ss_pred EeehhhccccccchhhHHhHhccchhhhhhhcCeEEEccC-CcCC-CCcccccccHHHHHHhccCCCccCCcccHHHHHH
Confidence 6654 88885 788999753321 234556776665 4434 488898642111211
Q ss_pred -CCCCcEEEeeCCHHHHHHHHHHHhhh-CCCCEEEEecCCCccccc----CCC-CCCCCc----cccccEEEEEeCCcEE
Q 004946 524 -CLPNMIVMAPSDEDELVDMVATVASI-DDRPVCFRYPRGAIVRTD----LPG-YRGIPI----EEIGKGKVLVEGKDVA 592 (722)
Q Consensus 524 -~iP~l~V~~Psd~~E~~~~l~~a~~~-~~~Pv~ir~~r~~~~~~~----~p~-~~~~~~----~~igk~~vl~eG~dv~ 592 (722)
.--||+|+-+++|...+.+++.-+.+ -.+|.+|..|+..+.... +.+ ..+..+ .+-|+...-.++-+-.
T Consensus 818 l~dcNw~vvn~tTPaNyfHvLRRQi~~~FRKPliif~pKsLLRHp~arS~~~ef~~g~~fq~vi~e~g~~~~~pe~vkrl 897 (1017)
T KOG0450|consen 818 LQDCNWQVVNCTTPANYFHVLRRQIHRPFRKPLIIFTPKSLLRHPEARSSFSEFDEGTGFQRVIPEDGKAAQNPENVKRL 897 (1017)
T ss_pred HhcCCeEEEecCChHHHHHHHHHHhhhcccCceEEeccHHhhcCccccCCHHHhccCCCCceeccccccccCChhhceEE
Confidence 01279999999999999999987653 357999999987643211 000 001111 0112222223344667
Q ss_pred EEEechhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcCCC---eEEEEcCCC-CCChHHHH
Q 004946 593 LLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHT---FLITVEEGS-IGGFGSHV 658 (722)
Q Consensus 593 lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~~---~vvvvEe~~-~gG~gs~v 658 (722)
|+++|-......++.+... .--+|.+..+-.|.||+.+++++-++++. .+..=||+. .|.| ++|
T Consensus 898 v~csGkVyydL~k~Rk~~~-~~~~vAi~RvEQl~PFp~dli~~e~~~YpnaEivWcQEE~~NmG~w-~Yv 965 (1017)
T KOG0450|consen 898 VFCSGKVYYDLTKERKEVG-LEGDVAITRVEQLSPFPFDLIQQELNKYPNAEIVWCQEEHKNMGAW-DYV 965 (1017)
T ss_pred EEecceEehhhhHHHHhcC-cccceeEEEeeccCCCcHHHHHHHHHhCCCceeeehhhhhcccCch-hhc
Confidence 8999988876655554432 12368888999999999999988887654 455568887 4655 344
No 167
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=98.24 E-value=2.1e-06 Score=97.10 Aligned_cols=124 Identities=21% Similarity=0.264 Sum_probs=90.1
Q ss_pred CCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcc-cchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhh
Q 004946 192 GHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTM-AGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINA 270 (722)
Q Consensus 192 G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~-~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~ 270 (722)
=.+|.|++.|-|++.+. .+++|++||||.|- .|+ .++.+|.+.+.|++++|.||.. ..+|+.|. .+..|-
T Consensus 428 ~~mGssig~a~g~~~~~-----~k~~va~iGDsTF~HsGi--~~l~nAV~n~~~~~~vvLdN~~-tAMTGgQp-~pg~~~ 498 (640)
T COG4231 428 TMMGSSIGIAGGLSFAS-----TKKIVAVIGDSTFFHSGI--LALINAVYNKANILVVVLDNRT-TAMTGGQP-HPGTGV 498 (640)
T ss_pred hhccchhhhcccccccc-----CCceEEEeccccccccCc--HHHHHHHhcCCCeEEEEEeccc-hhccCCCC-CCCccc
Confidence 45677788888887763 48999999999975 555 5799999999999999999997 46676652 111110
Q ss_pred hhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHH
Q 004946 271 LSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQE 350 (722)
Q Consensus 271 l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~ 350 (722)
- ..|..- ... ...++.+++|..++.++|-+|.+++.+++++
T Consensus 499 ~-------------------------~~g~~~--~~i------------~iee~~r~~Gv~~v~~vdp~~~~~~~~~~ke 539 (640)
T COG4231 499 A-------------------------AEGTKS--TAI------------VIEEVVRAMGVEDVETVDPYDVKELSEAIKE 539 (640)
T ss_pred c-------------------------cCCCcc--cee------------EhhHhhhhcCceeeeccCCcchHHHHHHHHH
Confidence 0 001000 000 0145678899999999999999999999999
Q ss_pred HHhcCCCCCEEEEEE
Q 004946 351 VASLGSMGPVLVHVV 365 (722)
Q Consensus 351 a~~~~~~~P~lI~v~ 365 (722)
+++. ++|.+|..+
T Consensus 540 ale~--~gpsViiak 552 (640)
T COG4231 540 ALEV--PGPSVIIAK 552 (640)
T ss_pred HhcC--CCceEEEEc
Confidence 9994 789999765
No 168
>PF03894 XFP: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; InterPro: IPR005593 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=98.18 E-value=7e-05 Score=72.56 Aligned_cols=143 Identities=15% Similarity=0.184 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHhcCC-CEEEEecCCCCccchHHHHH---h------------C---C-CceeecccchHHHHHHHHHHhc
Q 004946 405 DCFIEALVMEAEKDK-DIVVVHAGMEMDLSLQLFQE---K------------F---P-ERYFDVGMAEQHAVTFSAGLAC 464 (722)
Q Consensus 405 ~a~~~~L~~~~~~d~-~iv~i~ad~~~~~~l~~f~~---~------------~---p-~R~~d~GIaE~~av~~AaGlA~ 464 (722)
.++++.|.++++.++ ++.+++||...|.+|....+ + + + +|+++ -++|+.+.|+..|..+
T Consensus 2 ~~lg~~l~dv~~~N~~nfRvf~PDEt~SNrL~~v~e~t~r~w~~~~~~~~~~~~~~~~G~V~e-~LSEh~c~G~leGY~L 80 (179)
T PF03894_consen 2 RVLGKYLRDVIKLNPRNFRVFGPDETASNRLNAVFEVTNRQWMARILPPDDDEHLAPGGRVME-VLSEHQCQGWLEGYLL 80 (179)
T ss_dssp HHHHHHHHHHHHHSTTTEEEEESS-TTTTT-GGGGGT--EE--S----TTT-TTEESS-SEEE--S-HHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhCCCcceeECCCcchhhchHHHHHhcccccccccCCCcchhhcccCCeeee-ecCHHHHHHHHHHHHh
Confidence 467888889888876 69999999998888743221 0 1 2 45554 4999999999999999
Q ss_pred CCCeeEEEecHhhHH---HHHHHHHHHHh---c----CCCC-EEEEEeCCCc-cCCCCCCcCcHHHH-HHhcCCCC-cEE
Q 004946 465 GGLKPFCIIPSAFLQ---RAYDQVVNDVD---Q----QRLP-VRFVITSAGL-VGSDGPTQCGAFDI-TFMSCLPN-MIV 530 (722)
Q Consensus 465 ~G~~p~~~t~~~Fl~---ra~dqi~~~~a---~----~~lp-Vv~v~~~~G~-~G~dG~TH~~~~d~-a~~~~iP~-l~V 530 (722)
.|..-++++|-.|+. -++.|-...+- . ...| +.++.+.-.. .+.+|-|||.-.=+ .++...|+ +.|
T Consensus 81 tGrhglf~sYEAF~~ivdsM~~Qh~Kwl~~~~~~~wR~~~~SlN~l~TS~~wrQdhNG~SHQdPgfi~~~~~k~~~~~Rv 160 (179)
T PF03894_consen 81 TGRHGLFASYEAFAHIVDSMLNQHAKWLRHARELPWRAPIPSLNYLLTSHVWRQDHNGFSHQDPGFIDHVLNKKPDVVRV 160 (179)
T ss_dssp TT-EEEEEEEGGGGGGGHHHHHHHHHHHHHHHH-TTS---B-EEEEEES-CCG-TTT-GGG---THHHHHHCC--T-EEE
T ss_pred cCCcccccccchhHHHHHHHHHHHHHHHHHHHhCcCCCCCcceeEEeeccceecCCCCcccCCChHHHHHHhcCccccee
Confidence 999999999999963 34444322211 1 1233 4455544333 57899999954322 34444454 679
Q ss_pred EeeCCHHHHHHHHHHHhh
Q 004946 531 MAPSDEDELVDMVATVAS 548 (722)
Q Consensus 531 ~~Psd~~E~~~~l~~a~~ 548 (722)
|.|.|++-+..++..|++
T Consensus 161 ylPpDANtlLav~~~clr 178 (179)
T PF03894_consen 161 YLPPDANTLLAVMDHCLR 178 (179)
T ss_dssp EE-SSHHHHHHHHHHHHH
T ss_pred ecCCcHhHHHHHHHHHhc
Confidence 999999999999999874
No 169
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=98.01 E-value=3e-05 Score=82.59 Aligned_cols=132 Identities=17% Similarity=0.224 Sum_probs=98.1
Q ss_pred CcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccC-CCCcchhhhh
Q 004946 194 GCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEE-SPKTSINALS 272 (722)
Q Consensus 194 ~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~-~~~~~~g~l~ 272 (722)
-|-+++.|.|+.+|.+ +..||++-|||..- +.-...+.++...+.++++||.||.. ...|+.| +++.|.|+..
T Consensus 72 ~gra~a~atGik~A~~----~l~Viv~gGDG~~~-dIG~~~l~h~~~Rn~dit~iv~DNev-YgnTggQ~S~tTp~G~~t 145 (294)
T COG1013 72 HGRAAAVATGIKLANP----ALSVIVIGGDGDAY-DIGGNHLIHALRRNHDITYIVVDNEV-YGNTGGQASPTTPKGAKT 145 (294)
T ss_pred cCcchhhHHHHHHhcc----CCeEEEEecchhHh-hhhhHHHHHHHHcCCCeEEEEECCee-cccCCCccCCCCCCCcee
Confidence 3568889999999865 67999999999543 46667899999999999999999996 4566664 7888888654
Q ss_pred hhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHH
Q 004946 273 STLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVA 352 (722)
Q Consensus 273 ~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~ 352 (722)
+.... |.... .+ -+...++-+.|..|+..+---++.++.+.+++|.
T Consensus 146 ~t~p~---------------------Gk~~~---~k----------~d~~~la~a~G~~yVAr~~~~~~~~l~~~i~kA~ 191 (294)
T COG1013 146 KTTPY---------------------GKRSE---KK----------KDPGLLAMAAGATYVARASVGDPKDLTEKIKKAA 191 (294)
T ss_pred eecCC---------------------CCCcC---CC----------CCHHHHHHHCCCCeEEEecccCHHHHHHHHHHHH
Confidence 32211 11000 00 0235677889999987776667999999999988
Q ss_pred hcCCCCCEEEEEEee
Q 004946 353 SLGSMGPVLVHVVTE 367 (722)
Q Consensus 353 ~~~~~~P~lI~v~T~ 367 (722)
+ .+||.+||+.+.
T Consensus 192 ~--~~Gps~I~v~sP 204 (294)
T COG1013 192 E--HKGPSFIDVLSP 204 (294)
T ss_pred h--ccCCeEEEEecC
Confidence 8 479999999874
No 170
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=98.00 E-value=0.00011 Score=82.79 Aligned_cols=61 Identities=20% Similarity=0.256 Sum_probs=54.5
Q ss_pred hhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEEEEEeeccCCCcccccccchhhccCCCC
Q 004946 323 TLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGAS 389 (722)
Q Consensus 323 ~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kG~G~~~ae~~~~~~~~H~~~~ 389 (722)
..||+|||... .|||||.++|.+++.+++.. .++|++|.+.|.+|+|.+..+ +..|||.+.
T Consensus 199 ~r~ea~g~~~~-~V~~~d~d~i~ka~~~a~~~-k~kpt~i~~~t~~g~G~~~ig----~~~~Hg~pl 259 (632)
T KOG0523|consen 199 LRFEAFGWNVI-IVDGGDVDEIRKAIGKAKSV-KGKPTAIKATTFIGRGSPYIG----SESVHGAPL 259 (632)
T ss_pred HHHHHhCceEE-EEcCcCHHHHHHHHhhhhhc-cCCceeeeeeeeeecCccccc----cccccCCcc
Confidence 47999999998 89999999999999999865 578999999999999987764 689999876
No 171
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=97.96 E-value=6.1e-05 Score=78.86 Aligned_cols=137 Identities=18% Similarity=0.213 Sum_probs=90.5
Q ss_pred cCCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhh
Q 004946 191 AGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINA 270 (722)
Q Consensus 191 ~G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~ 270 (722)
+|.+|+.||+|+|+-.| .+++.||++.||-.|+ ...|+|...+++++|.|.++.||.| .|-
T Consensus 418 agplgwtipaalgv~~a----dp~r~vvalsgdydfq--fmieelavgaq~k~pyihv~vnnay-------------lgl 478 (592)
T COG3960 418 AGPLGWTIPAALGVCAA----DPKRNVVAISGDYDFQ--FLIEELAVGAQFKIPYIHVLVNNAY-------------LGL 478 (592)
T ss_pred cCCcccccchhhceeec----CCCCceEEeecCchHH--HHHHHHhhhhcccCceEEEEecchH-------------HHH
Confidence 59999999999999876 5799999999999997 7889999999999999999999987 332
Q ss_pred hhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHH
Q 004946 271 LSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQE 350 (722)
Q Consensus 271 l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~ 350 (722)
+ |+.-+++.-.. .+.-..+.+......-+.-+.....|++|+..+++ .+++++..+|++
T Consensus 479 i----------------rqaqr~f~mdy--~v~laf~nin~~~~~gygvdhv~v~eglgckairv---~~p~e~a~af~~ 537 (592)
T COG3960 479 I----------------RQAQRAFDMDY--CVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRV---FKPEDIAPAFEQ 537 (592)
T ss_pred H----------------HHHHhcCCccc--eeeehhhccCCccccccCccceeehhccCceeEEe---cChHHhhHHHHH
Confidence 1 11100000000 00000000000000001122356789999999987 678888888887
Q ss_pred HHhc--CCCCCEEEEEEee
Q 004946 351 VASL--GSMGPVLVHVVTE 367 (722)
Q Consensus 351 a~~~--~~~~P~lI~v~T~ 367 (722)
++.. ...-|+++++.-+
T Consensus 538 a~~lm~eh~vpvvve~ile 556 (592)
T COG3960 538 AKALMAQHRVPVVVEVILE 556 (592)
T ss_pred HHHHHHhcCCCeeeehHHH
Confidence 7642 2356999987754
No 172
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=97.75 E-value=0.0014 Score=63.58 Aligned_cols=114 Identities=16% Similarity=0.163 Sum_probs=81.8
Q ss_pred CCceeecccchHHHHHHHHHHhcCCCeeEEEecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCccCCC--CCCcCcHHHH
Q 004946 442 PERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSD--GPTQCGAFDI 519 (722)
Q Consensus 442 p~R~~d~GIaE~~av~~AaGlA~~G~~p~~~t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~d--G~TH~~~~d~ 519 (722)
.-+++.+- .|+.++.+|.|.+..|.+.++.+..+.+..+.+.+. .+...+.|++++....+..+.. ...|+.....
T Consensus 41 ~i~~i~~~-~E~~A~~~A~g~~r~~~~v~~~~~gpG~~n~~~~l~-~a~~~~~P~v~i~g~~~~~~~~~~~~~~~~~~~~ 118 (160)
T cd07034 41 GGVVVQAE-SEHAAAEAAIGASAAGARAMTATSGPGLNLMAEALY-LAAGAELPLVIVVAQRPGPSTGLPKPDQSDLMAA 118 (160)
T ss_pred CcEEEEeC-CHHHHHHHHHHHHhhCCcEEEeeCcchHHHHHHHHH-HHHhCCCCEEEEEeeCCCCCCCCCCcCcHHHHHH
Confidence 35888886 999999999999999988666678999999998875 4445689999887544432221 1223333333
Q ss_pred HHhcCCCCcEEEeeCCHHHHHHHHHHHhhh---CCCCEEEEec
Q 004946 520 TFMSCLPNMIVMAPSDEDELVDMVATVASI---DDRPVCFRYP 559 (722)
Q Consensus 520 a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~---~~~Pv~ir~~ 559 (722)
.+++ |-.-++.+.+++|+..++..|+.. ..+|++++++
T Consensus 119 ~~~~--~~~~~~~~~~~~~~~~~~~~A~~~a~~~~~Pv~l~~~ 159 (160)
T cd07034 119 RYGG--HPWPVLAPSSVQEAFDLALEAFELAEKYRLPVIVLSD 159 (160)
T ss_pred HhCC--CCEEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 3333 245678899999999999988863 3479999864
No 173
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=97.66 E-value=0.00051 Score=77.31 Aligned_cols=213 Identities=19% Similarity=0.251 Sum_probs=114.8
Q ss_pred ccCCCCchhccCCCHHHHHHHHHHHHHHHHHhHhcCCCCCCCcchHHHHHHHHhhccCCCCcEEEecCCchHHHHHHHhC
Q 004946 82 LDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTG 161 (722)
Q Consensus 82 l~~i~~p~~~~~l~~~~l~~la~eiR~~ii~~~~~~gGh~~~slg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltG 161 (722)
++.|.-+...++-..+++..+.+..|+.+.+... +| ++....+...|-... +|.|.++.+.+ .-.-
T Consensus 336 ~~~~~~~~~~~~~Wl~~~~~~~~~~~~~v~~~~~---~~---~~~e~~~a~~l~~~l-p~~~~LFvgNS--mpVR----- 401 (566)
T COG1165 336 ARSIHPAGRIRKPWLDEWLALNEKARQAVRDQLA---AE---ALTEAHLAAALADLL-PPQDQLFVGNS--MPVR----- 401 (566)
T ss_pred HHHhccccccccHHHHHHHHHHHHHHHHHHHHhc---cc---CchhhHHHHHHHHhC-CCCCeEEEecC--chhh-----
Confidence 3333333333445566777777777776666544 33 333333333343322 46777777332 1111
Q ss_pred chhhhhHHHhh-CCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhh
Q 004946 162 RRSLIHTLRKK-DGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGY 240 (722)
Q Consensus 162 r~~~~~~~r~~-ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~ 240 (722)
.+..+-+. .+..-|.+| |+...=..+|-|+|++.|. .+++|++|||=++-.-++ +|-....
T Consensus 402 ---dvd~~~~~~~~~~v~sNR--------GA~GIDG~vSTA~Gi~~a~-----~~ptv~liGDLS~lhD~N--gLl~~k~ 463 (566)
T COG1165 402 ---DVDALGQLPAGYRVYSNR--------GASGIDGTVSTALGIARAT-----QKPTVALIGDLSFLHDLN--GLLLLKK 463 (566)
T ss_pred ---hHHHhccCccCceeecCC--------CccccchhHHHHhhhhhhc-----CCceEEEEechhhhhccc--hHhhcCC
Confidence 01111111 233344444 3322234578899999874 566999999998743222 3444555
Q ss_pred cCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCC
Q 004946 241 LDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQ 320 (722)
Q Consensus 241 ~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~ 320 (722)
...|+++||.||+. |++-.+|..-.....+ +..+ |.+ =.-+
T Consensus 464 ~~~~ltIvv~NNnG--------------GgIF~~Lp~~~~~~~f----e~~F------~tP---------------h~ld 504 (566)
T COG1165 464 VPQPLTIVVVNNNG--------------GGIFSLLPQAQSEPVF----ERLF------GTP---------------HGLD 504 (566)
T ss_pred CCCCeEEEEEeCCC--------------ceeeeeccCCCCcchH----HHhc------CCC---------------CCCC
Confidence 56787766655542 1111111111110000 0000 111 0123
Q ss_pred hhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEEEEEeeccC
Q 004946 321 GSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENR 370 (722)
Q Consensus 321 ~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kG~ 370 (722)
++.+++.||+.|..+ ++.+++.++++..-. ..+-.+||++|.+-.
T Consensus 505 F~~la~~y~l~y~~~---~s~~~l~~~~~~~~~--~~g~~viEvkt~r~~ 549 (566)
T COG1165 505 FAHLAATYGLEYHRP---QSWDELGEALDQAWR--RSGTTVIEVKTDRSD 549 (566)
T ss_pred HHHHHHHhCcccccc---CcHHHHHHHHhhhcc--CCCcEEEEEecChhH
Confidence 567788899999877 789999999988765 367899999996554
No 174
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=97.59 E-value=0.00028 Score=76.60 Aligned_cols=115 Identities=13% Similarity=0.199 Sum_probs=85.2
Q ss_pred CCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccC-CCCcchhhhhhhhhhhhhhhHHHHHHHHHh
Q 004946 214 RECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEE-SPKTSINALSSTLSRIQSSKSFRQLREVAK 292 (722)
Q Consensus 214 ~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~-~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~ 292 (722)
+..||++-|||..- .+-+.++.+|...+.|+++||.||.. ...|+.| +.+.|.|+.+++-..
T Consensus 151 ~~~v~v~gGDG~~y-dIG~~~l~ha~~r~~ni~~iv~DNe~-Y~nTGgQ~S~tTp~Ga~t~tsp~--------------- 213 (365)
T cd03377 151 KKSVWIIGGDGWAY-DIGYGGLDHVLASGENVNILVLDTEV-YSNTGGQASKATPLGAVAKFAAA--------------- 213 (365)
T ss_pred ccceEEEecchhhh-ccchhhHHHHHHcCCCeEEEEECCcc-cccCCCcCCCCCCCcCcCccCCC---------------
Confidence 46899999999654 36677899999999999999999996 4677775 777888876432111
Q ss_pred hhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCC-CCHHHHHHHHHHHHhcCCCCCEEEEEEee
Q 004946 293 GMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDG-HNIEDLISVLQEVASLGSMGPVLVHVVTE 367 (722)
Q Consensus 293 ~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdG-hd~~~l~~al~~a~~~~~~~P~lI~v~T~ 367 (722)
|.... -+ +...++.++|..|+..+-- -++.++.+++++|.+ .+||.+||+.+.
T Consensus 214 ------Gk~~~---------kk-----d~~~ia~a~g~~YVA~~s~~~~~~~~~~~i~eA~~--~~Gps~I~v~sP 267 (365)
T cd03377 214 ------GKRTG---------KK-----DLGMIAMSYGNVYVAQIALGANDNQTLKAFREAEA--YDGPSLIIAYSP 267 (365)
T ss_pred ------CCCCC---------Cc-----CHHHHHHHcCCCEEEEEecccCHHHHHHHHHHHhc--CCCCEEEEEEcc
Confidence 11100 01 1245777889988877654 589999999999988 489999999874
No 175
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=97.48 E-value=0.00086 Score=73.80 Aligned_cols=125 Identities=18% Similarity=0.302 Sum_probs=87.5
Q ss_pred HHhCCC-ceeecccchHHHHHHHHHHhcC-CCeeEEEecHhhHHHHHHHHHHH--HhcCCCCEEEEEeCCCccC-CCCCC
Q 004946 438 QEKFPE-RYFDVGMAEQHAVTFSAGLACG-GLKPFCIIPSAFLQRAYDQVVND--VDQQRLPVRFVITSAGLVG-SDGPT 512 (722)
Q Consensus 438 ~~~~p~-R~~d~GIaE~~av~~AaGlA~~-G~~p~~~t~~~Fl~ra~dqi~~~--~a~~~lpVv~v~~~~G~~G-~dG~T 512 (722)
.++.|+ |++-+ -+|..+|++|+|+.++ |.+|++.+-.+.+-.+...+... ....++|+++++.++|-.| .|-|+
T Consensus 21 ~~~~~~~~~i~~-~~E~~av~iaaG~~latG~~~~v~mQnSGlGn~vN~l~SL~~~~~y~iP~l~~i~~RG~~g~~depq 99 (361)
T TIGR03297 21 TDNNRDLRHVIA-ANEGAAVGLAAGAYLATGKRAAVYMQNSGLGNAVNPLTSLADTEVYDIPLLLIVGWRGEPGVHDEPQ 99 (361)
T ss_pred HhcCCCceEEec-CCchHHHHHHHHHHHhcCCccEEEEecCchhhhhhHHHhhccccccCcCeeEEEecCCCCCCCCCch
Confidence 334544 66665 7899999999999999 99999999878887777766444 3446999999999998766 66788
Q ss_pred cC--cHHHHHHhcCCCCcEEEe-eCCHHHHHHHHHHHhh---hCCCCEEEEecCCCcc
Q 004946 513 QC--GAFDITFMSCLPNMIVMA-PSDEDELVDMVATVAS---IDDRPVCFRYPRGAIV 564 (722)
Q Consensus 513 H~--~~~d~a~~~~iP~l~V~~-Psd~~E~~~~l~~a~~---~~~~Pv~ir~~r~~~~ 564 (722)
|. +.--..++..+ ++..+. |.+..|....+..|++ ..++|+.+.+.++...
T Consensus 100 h~~~G~~t~~lL~~~-~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~p~a~l~~~~~~~ 156 (361)
T TIGR03297 100 HVKQGRITLSLLDAL-EIPWEVLSTDNDEALAQIERALAHALATSRPYALVVRKGTFA 156 (361)
T ss_pred hhHHhHHHHHHHHHc-CCCEEECCCChHHHHHHHHHHHHHHHHHCCCEEEEEcccccc
Confidence 84 43333444432 333333 4556666665555554 2678999999887643
No 176
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=97.40 E-value=0.0014 Score=63.22 Aligned_cols=114 Identities=17% Similarity=0.193 Sum_probs=83.7
Q ss_pred CceeecccchHHHHHHHHHHhcCCCe-eEEE-ecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCccCCCCCCcCcHHHHH
Q 004946 443 ERYFDVGMAEQHAVTFSAGLACGGLK-PFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDIT 520 (722)
Q Consensus 443 ~R~~d~GIaE~~av~~AaGlA~~G~~-p~~~-t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~d~a 520 (722)
-|++.+ ..|..++.+|.|.+..+.| +++. +..+.+..+...+ ..+...++|++++....+.....-.+||......
T Consensus 35 ~~~i~~-~~E~~A~~~A~g~~~~~~~~~v~~~~~gpG~~n~~~~l-~~A~~~~~Pll~i~~~~~~~~~~~~~~q~~d~~~ 112 (155)
T cd07035 35 IRYILV-RHEQGAVGMADGYARATGKPGVVLVTSGPGLTNAVTGL-ANAYLDSIPLLVITGQRPTAGEGRGAFQEIDQVA 112 (155)
T ss_pred CEEEEe-CCHHHHHHHHHHHHHHHCCCEEEEEcCCCcHHHHHHHH-HHHHhhCCCEEEEeCCCccccccCCcccccCHHH
Confidence 367766 7999999999999999654 4444 3688888888765 5667779999998865554333233466555556
Q ss_pred HhcCCCCcEEEeeCCHHHHHHHHHHHhhhC----CCCEEEEec
Q 004946 521 FMSCLPNMIVMAPSDEDELVDMVATVASID----DRPVCFRYP 559 (722)
Q Consensus 521 ~~~~iP~l~V~~Psd~~E~~~~l~~a~~~~----~~Pv~ir~~ 559 (722)
+++.+-.+ .+...+++|+...+..|+... .+||+|.+|
T Consensus 113 ~~~~~~~~-~~~i~~~~~~~~~i~~A~~~a~~~~~gPv~l~ip 154 (155)
T cd07035 113 LFRPITKW-AYRVTSPEEIPEALRRAFRIALSGRPGPVALDLP 154 (155)
T ss_pred HHHHHhce-EEEcCCHHHHHHHHHHHHHHhcCCCCCcEEEEec
Confidence 77777655 677789999999999998742 469999776
No 177
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=97.11 E-value=0.0015 Score=80.76 Aligned_cols=66 Identities=12% Similarity=0.022 Sum_probs=53.7
Q ss_pred cCCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcc-cchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCC
Q 004946 191 AGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTM-AGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEES 263 (722)
Q Consensus 191 ~G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~-~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~ 263 (722)
.-+||.+++.++|++.. .++++||++||||.+. .|+ -|+.+|.+.+.|++++|.||.. ..+|+.|.
T Consensus 480 ~~~MG~eg~~~~G~a~f----~~~~hv~a~iGDgTffHSG~--~al~~AV~~~~nit~~IL~N~~-vAMTGgQ~ 546 (1165)
T PRK09193 480 FTQMGGEGVPWIGQAPF----TDEKHVFQNLGDGTYFHSGL--LAIRAAVAAGVNITYKILYNDA-VAMTGGQP 546 (1165)
T ss_pred eeccCCcchhhceeccc----cCCCcEEEEeccccchhcCH--HHHHHHHhcCCCeEEEEEeCCc-ccccCCCC
Confidence 35788888899998875 3358899999999975 555 5899999999999999999997 45676653
No 178
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=97.01 E-value=0.0015 Score=80.88 Aligned_cols=65 Identities=12% Similarity=0.067 Sum_probs=53.6
Q ss_pred CCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcc-cchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCC
Q 004946 192 GHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTM-AGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEES 263 (722)
Q Consensus 192 G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~-~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~ 263 (722)
-+||.+++.++|++.+. .+++||++||||.+. .|+. +|.+|.+.+.|++++|.||.. ..+|+.|.
T Consensus 468 ~~MG~~g~~~~G~a~~~----~~~~v~a~iGDgTf~HSG~~--al~~AV~~~~nit~~IL~N~~-tAMTGgQp 533 (1159)
T PRK13030 468 TQMGGEGVDWIGHAPFT----ETKHVFQNLGDGTYFHSGSL--AIRQAVAAGANITYKILYNDA-VAMTGGQP 533 (1159)
T ss_pred eccCccchhhceecccc----CCCCEEEEeccchhhhcCHH--HHHHHHhcCCCeEEEEEeCCc-ccccCCCC
Confidence 47888888899998773 357899999999975 6665 999999999999999999997 45676653
No 179
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=96.71 E-value=0.026 Score=55.46 Aligned_cols=125 Identities=17% Similarity=0.205 Sum_probs=85.2
Q ss_pred HHHHHhCCCceeecccchHHHHHHHHHHhcCCCeeEEEe--cHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCccC-CCCC
Q 004946 435 QLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCII--PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVG-SDGP 511 (722)
Q Consensus 435 ~~f~~~~p~R~~d~GIaE~~av~~AaGlA~~G~~p~~~t--~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G-~dG~ 511 (722)
+.+.+...-|++.+ -.|++++.+|.|.+..+-+|-+.+ +.+.+..+...+ ..+...+.|++++....+..+ ..+.
T Consensus 32 ~al~~~~~i~~i~~-~~E~~A~~~A~g~ar~~g~~~v~~~~~GpG~~n~~~~l-~~A~~~~~Pvl~i~g~~~~~~~~~~~ 109 (172)
T PF02776_consen 32 DALEKSPGIRFIPV-RHEQGAAFMADGYARATGRPGVVIVTSGPGATNALTGL-ANAYADRIPVLVITGQRPSAGEGRGA 109 (172)
T ss_dssp HHHHHTTTSEEEE--SSHHHHHHHHHHHHHHHSSEEEEEEETTHHHHTTHHHH-HHHHHTT-EEEEEEEESSGGGTTTTS
T ss_pred HHhhhhcceeeecc-cCcchhHHHHHHHHHhhccceEEEeecccchHHHHHHH-hhcccceeeEEEEecccchhhhcccc
Confidence 33443323478876 999999999999998755554443 555665555444 345677999998886555422 2466
Q ss_pred CcCcHHHHHHhcCCCCcEEEeeCCHHHHHHHHHHHhhh----CCCCEEEEecCCC
Q 004946 512 TQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (722)
Q Consensus 512 TH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~----~~~Pv~ir~~r~~ 562 (722)
.|+......+++.+-.+ .+.+.++.++...++.|+.. ..+|++|.+|...
T Consensus 110 ~q~~~d~~~~~~~~~k~-~~~v~~~~~~~~~~~~A~~~a~~~~~gPv~l~ip~dv 163 (172)
T PF02776_consen 110 FQQEIDQQSLFRPVTKW-SYRVTSPDDLPEALDRAFRAATSGRPGPVYLEIPQDV 163 (172)
T ss_dssp TTSSTHHHHHHGGGSSE-EEEECSGGGHHHHHHHHHHHHHHCSTSEEEEEEEHHH
T ss_pred cccchhhcchhccccch-hcccCCHHHHHHHHHHHHHHhccCCCccEEEEcChhH
Confidence 77666667788877655 67777888887777777754 4679999988754
No 180
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=96.58 E-value=0.0067 Score=74.99 Aligned_cols=65 Identities=14% Similarity=0.072 Sum_probs=52.3
Q ss_pred CCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcc-cchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCC
Q 004946 192 GHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTM-AGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEES 263 (722)
Q Consensus 192 G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~-~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~ 263 (722)
-+||.+++.++|++.. .++++||+++|||.+. .|+ -|+.+|.+.+.|++++|.||+. ..+|+.|.
T Consensus 495 ~~MGgeg~~~~G~a~f----~~~~hv~aniGDgTffHSG~--~alr~AV~~~~nit~kIL~N~a-vAMTGgQp 560 (1186)
T PRK13029 495 SQMGGEGVAWIGQMPF----SRRRHVFQNLGDGTYFHSGL--LAIRQAIAAGVNITYKILYNDA-VAMTGGQP 560 (1186)
T ss_pred eccCcchhhheeeccc----CCCCCEEEEeccccchhcCH--HHHHHHHhcCCCEEEEEEeCcc-hhccCCCC
Confidence 4678888888888865 2357899999999975 555 4899999999999999999997 45676653
No 181
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=96.55 E-value=0.099 Score=50.80 Aligned_cols=108 Identities=19% Similarity=0.273 Sum_probs=71.0
Q ss_pred ccchHHHHHHHHHHhcCCCeeEEEecHhhHHHHHHHHHHHHh-cCCCCEEEEEeCCCccCCCCCCcCcH--HHHHHh--c
Q 004946 449 GMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVD-QQRLPVRFVITSAGLVGSDGPTQCGA--FDITFM--S 523 (722)
Q Consensus 449 GIaE~~av~~AaGlA~~G~~p~~~t~~~Fl~ra~dqi~~~~a-~~~lpVv~v~~~~G~~G~dG~TH~~~--~d~a~~--~ 523 (722)
.-+|..++++|+|.++.|.+|.+.+-.+.+..+...+ .++. ..+.||+++....|-.|.+-+.|... ..-..+ .
T Consensus 40 ~~~ee~aa~~aAg~~~~~~~~~v~~~~sG~gn~~~~l-~~a~~~~~~Pvl~i~g~rg~~~~~~~~q~~~g~~~~~~l~~~ 118 (157)
T TIGR03845 40 LTREEEGVGICAGAYLAGKKPAILMQSSGLGNSINAL-ASLNKTYGIPLPILASWRGVYKEKIPAQIPMGRATPKLLDTL 118 (157)
T ss_pred cCChHHHHHHHHHHHHhcCCcEEEEeCCcHHHHHHHH-HHHHHcCCCCEEEEEeccCCCCCCCccccchhhhhHHHHHHc
Confidence 5799999999999999999999887655565666555 3555 77999999986666434332222211 111111 2
Q ss_pred CCCCcEEEeeCCHHHHHHHHHHHhhh---CCCCEEEEecCC
Q 004946 524 CLPNMIVMAPSDEDELVDMVATVASI---DDRPVCFRYPRG 561 (722)
Q Consensus 524 ~iP~l~V~~Psd~~E~~~~l~~a~~~---~~~Pv~ir~~r~ 561 (722)
.+| .....+++|+ ..+..|++. ..+|++|..++.
T Consensus 119 ~i~---~~~i~~~e~~-~~i~~A~~~a~~~~gPv~il~~~~ 155 (157)
T TIGR03845 119 GIP---YTIPREPEEA-KLIEKAISDAYENSRPVAALLDPK 155 (157)
T ss_pred CCC---eEEeCCHHHH-HHHHHHHHHHHhCCCCEEEEEeCC
Confidence 334 5555667787 777777642 448999988764
No 182
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=96.51 E-value=0.0069 Score=76.10 Aligned_cols=114 Identities=15% Similarity=0.249 Sum_probs=85.1
Q ss_pred CeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccC-CCCcchhhhhhhhhhhhhhhHHHHHHHHHhh
Q 004946 215 ECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEE-SPKTSINALSSTLSRIQSSKSFRQLREVAKG 293 (722)
Q Consensus 215 ~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~-~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~ 293 (722)
..||++-|||..- ++-+.++.++...+.|+.+||.||.. ...|+.| +.+.|.|+..++-..
T Consensus 952 ~sv~~~~GDG~~~-diG~~~l~~~~~r~~~v~~i~~dne~-Y~nTggQ~S~~tp~g~~t~~~~~---------------- 1013 (1165)
T TIGR02176 952 KSVWIIGGDGWAY-DIGYGGLDHVLASGKDVNVLVMDTEV-YSNTGGQSSKATPTGAIAKFAAA---------------- 1013 (1165)
T ss_pred ceeEEEecchhhh-ccCccchHHHHHcCCCeEEEEECCcc-cccCCCcCCCCCCCcCccccCCC----------------
Confidence 4799999999653 46667899999999999999999996 4677775 777888866432111
Q ss_pred hhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecC-CCCHHHHHHHHHHHHhcCCCCCEEEEEEee
Q 004946 294 MTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVD-GHNIEDLISVLQEVASLGSMGPVLVHVVTE 367 (722)
Q Consensus 294 i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vd-Ghd~~~l~~al~~a~~~~~~~P~lI~v~T~ 367 (722)
|.... -+ +...++.++|..|+..+. |-++.++.+++++|.+ -+||.+|++.+.
T Consensus 1014 -----g~~~~---------kk-----d~~~~a~~~g~~yvA~~~~~~~~~~~~~~~~~A~~--~~G~s~i~~~~p 1067 (1165)
T TIGR02176 1014 -----GKRTS---------KK-----DLGMMAMTYGYVYVAQVSMGANMQQTLKAFREAEA--YDGPSIVIAYSP 1067 (1165)
T ss_pred -----CCCCC---------Cc-----CHHHHHHHCCCCEEEEEecccCHHHHHHHHHHHHc--CCCCEEEEEECC
Confidence 11000 01 124577889999988776 6689999999999988 489999999874
No 183
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=95.56 E-value=0.027 Score=52.56 Aligned_cols=110 Identities=14% Similarity=0.178 Sum_probs=77.2
Q ss_pred cchHHHHHHHHHHhcCCCeeEEEecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCccCCCCCCcCcH--HHHHHhcCCCC
Q 004946 450 MAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGA--FDITFMSCLPN 527 (722)
Q Consensus 450 IaE~~av~~AaGlA~~G~~p~~~t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~--~d~a~~~~iP~ 527 (722)
-+|...+|+++|+.++|.+|..-+-.+.+-.....+-..-...++|..+++.+.|..+++=+.+.+. .--.++.. -+
T Consensus 49 tREEeg~GIcAGa~lAGkk~ailmQnsGlGNsiNal~SL~~ty~iPl~ml~ShRG~~~E~i~AQVpmGr~~~kiLe~-~~ 127 (172)
T COG4032 49 TREEEGVGICAGAYLAGKKPAILMQNSGLGNSINALASLYVTYKIPLLMLASHRGVLKEGIEAQVPMGRALPKILEG-LE 127 (172)
T ss_pred cchhcceeeehhhhhcCCCcEEEEeccCcchHHHHHHHHHHHhccchhhhhhccchhhcCCccccccchhhHHHHhh-cC
Confidence 4788999999999999999999887777765554443333456899999999999866655444321 11122232 24
Q ss_pred cEEEeeCCHHHHHHHHHHHhh---hCCCCEEEEecC
Q 004946 528 MIVMAPSDEDELVDMVATVAS---IDDRPVCFRYPR 560 (722)
Q Consensus 528 l~V~~Psd~~E~~~~l~~a~~---~~~~Pv~ir~~r 560 (722)
+..+.|-.++|...++..+.. ...+||.+.++-
T Consensus 128 lpt~t~~~p~Ea~~li~~~~~~a~~~s~pv~vlls~ 163 (172)
T COG4032 128 LPTYTIIGPEEALPLIENAILDAFENSRPVAVLLSP 163 (172)
T ss_pred CcccccCCHHHHHHHHHHHHHHHHHcCCceEEEech
Confidence 557899999998877766543 367799988754
No 184
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=95.54 E-value=0.58 Score=45.70 Aligned_cols=115 Identities=10% Similarity=-0.012 Sum_probs=79.6
Q ss_pred ceeecccchHHHHHHHHHHhcCCCeeEEE--ecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCccCCCCCCcCcHHHHHH
Q 004946 444 RYFDVGMAEQHAVTFSAGLACGGLKPFCI--IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITF 521 (722)
Q Consensus 444 R~~d~GIaE~~av~~AaGlA~~G~~p~~~--t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~d~a~ 521 (722)
|++.+ -.|+++..+|.|.|..--+|-++ ++.+.+..++--+ ..+...+.||+++.............+|......+
T Consensus 40 ~~v~~-rhE~~A~~mA~gyar~tg~~~v~~~t~GpG~~n~~~~l-~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~ 117 (164)
T cd07039 40 EFIQV-RHEEAAAFAASAEAKLTGKLGVCLGSSGPGAIHLLNGL-YDAKRDRAPVLAIAGQVPTDELGTDYFQEVDLLAL 117 (164)
T ss_pred eEEEe-CCHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHH-HHHHhcCCCEEEEecCCcccccCCCCCcccCHHHH
Confidence 66655 89999999999999984444443 4777777777544 46667899999986432221111124776666677
Q ss_pred hcCCCCcEEEeeCCHHHHHHHHHHHhhh---CCCCEEEEecCC
Q 004946 522 MSCLPNMIVMAPSDEDELVDMVATVASI---DDRPVCFRYPRG 561 (722)
Q Consensus 522 ~~~iP~l~V~~Psd~~E~~~~l~~a~~~---~~~Pv~ir~~r~ 561 (722)
++.+-.+ ...+.++.++...++.|+.. ..+||+|-+|..
T Consensus 118 ~~~~tk~-~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~d 159 (164)
T cd07039 118 FKDVAVY-NETVTSPEQLPELLDRAIRTAIAKRGVAVLILPGD 159 (164)
T ss_pred HHHhhcE-EEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeChH
Confidence 7877665 46667888888888887753 458999988765
No 185
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=95.19 E-value=0.14 Score=50.29 Aligned_cols=114 Identities=13% Similarity=0.108 Sum_probs=67.3
Q ss_pred hCCCceeeccc--chHHHHHHHHHHhcCC-CeeEEEec--HhhHHHHHHHHHHHHhcCCCCEEEEE-eCCCccCCCCCCc
Q 004946 440 KFPERYFDVGM--AEQHAVTFSAGLACGG-LKPFCIIP--SAFLQRAYDQVVNDVDQQRLPVRFVI-TSAGLVGSDGPTQ 513 (722)
Q Consensus 440 ~~p~R~~d~GI--aE~~av~~AaGlA~~G-~~p~~~t~--~~Fl~ra~dqi~~~~a~~~lpVv~v~-~~~G~~G~dG~TH 513 (722)
..|.+++..|. +=-.++++|.|++++. -++++++. ..|+.. . |-+..++..++|+++++ +..|+ |.....+
T Consensus 36 ~~p~~~~~~~~~g~mG~~lp~AiGa~la~~~~~vv~i~GDG~f~~~-~-~el~ta~~~~lpv~ivv~NN~~~-~~~~~~~ 112 (172)
T cd02004 36 RKPRHRLDAGTFGTLGVGLGYAIAAALARPDKRVVLVEGDGAFGFS-G-MELETAVRYNLPIVVVVGNNGGW-YQGLDGQ 112 (172)
T ss_pred cCCCcEecCCCCCcccchHHHHHHHHHhCCCCeEEEEEcchhhcCC-H-HHHHHHHHcCCCEEEEEEECccc-ccchhhh
Confidence 45788887542 2233566777777765 35666664 455432 2 32456778899977766 44443 2111000
Q ss_pred ---------C----cHHHHH-HhcCCCCcEEEeeCCHHHHHHHHHHHhhhCCCCEEEEe
Q 004946 514 ---------C----GAFDIT-FMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRY 558 (722)
Q Consensus 514 ---------~----~~~d~a-~~~~iP~l~V~~Psd~~E~~~~l~~a~~~~~~Pv~ir~ 558 (722)
. ...|.. +.+. -|+..+.-.+.+|+...+++++. .++|++|-.
T Consensus 113 ~~~~~~~~~~~~~~~~~d~~~la~a-~G~~~~~v~~~~el~~al~~a~~-~~~p~liev 169 (172)
T cd02004 113 QLSYGLGLPVTTLLPDTRYDLVAEA-FGGKGELVTTPEELKPALKRALA-SGKPALINV 169 (172)
T ss_pred hhhccCCCceeccCCCCCHHHHHHH-CCCeEEEECCHHHHHHHHHHHHH-cCCCEEEEE
Confidence 0 112222 2222 25667777899999999999976 578998853
No 186
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=94.77 E-value=0.23 Score=48.49 Aligned_cols=113 Identities=12% Similarity=0.134 Sum_probs=73.1
Q ss_pred ceeecccchHHHHHHHHHHhcCCCeeEEE--ecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCccCCCCCCcCcHHHHHH
Q 004946 444 RYFDVGMAEQHAVTFSAGLACGGLKPFCI--IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITF 521 (722)
Q Consensus 444 R~~d~GIaE~~av~~AaGlA~~G~~p~~~--t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~d~a~ 521 (722)
|++.+ -.|++++.||-|.|..--+|-+. ++.+.+..+.--+ ..+...+.||+++.........+-.++|......+
T Consensus 37 ~~v~~-rhE~~A~~mAdgyar~sg~~gv~~~t~GpG~~n~~~gl-~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~l 114 (162)
T cd07037 37 RLHVR-VDERSAAFFALGLAKASGRPVAVVCTSGTAVANLLPAV-VEAYYSGVPLLVLTADRPPELRGTGANQTIDQVGL 114 (162)
T ss_pred eEEec-cChHHHHHHHHHHHHhhCCCEEEEECCchHHHHHhHHH-HHHHhcCCCEEEEECCCCHHhcCCCCCcccchhhh
Confidence 66666 89999999999999974444443 4788887777544 56677899999887443322222234777666677
Q ss_pred hcCCCCcEEEeeCCHHH------HHHHHHHHhhh----CCCCEEEEec
Q 004946 522 MSCLPNMIVMAPSDEDE------LVDMVATVASI----DDRPVCFRYP 559 (722)
Q Consensus 522 ~~~iP~l~V~~Psd~~E------~~~~l~~a~~~----~~~Pv~ir~~ 559 (722)
++.+-.+. ....++++ +..+++.|+.. ..+||+|-+|
T Consensus 115 ~~~vtk~~-~~v~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP 161 (162)
T cd07037 115 FGDYVRWS-VDLPPPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNLP 161 (162)
T ss_pred ccceeeEE-EecCCcccchhHHHHHHHHHHHHHHHhCCCCCCEEEecc
Confidence 77655442 33444444 55556555542 3479998654
No 187
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=94.76 E-value=0.37 Score=46.70 Aligned_cols=143 Identities=15% Similarity=0.206 Sum_probs=78.0
Q ss_pred HHHHHHHHHHhcCCCEEEEecCCCCccchHHH-HHhCCCceeecccchHHHHHHHHHHhcCCCeeEEEec--HhhHHHHH
Q 004946 406 CFIEALVMEAEKDKDIVVVHAGMEMDLSLQLF-QEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIP--SAFLQRAY 482 (722)
Q Consensus 406 a~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f-~~~~p~R~~d~GIaE~~av~~AaGlA~~G~~p~~~t~--~~Fl~ra~ 482 (722)
.+.+.|.+.+ . +.+++. |.+. +...-+ ....|.+|+..|-- ...+..|.|++++--+|++++. ..|+.-.-
T Consensus 3 ~~~~~l~~~l-~-d~~vv~--d~G~-~~~~~~~~~~~~~~~~~~gsm-G~~lp~AiGa~~a~~~~Vv~i~GDG~f~m~~~ 76 (157)
T cd02001 3 AAIAEIIEAS-G-DTPIVS--TTGY-ASRELYDVQDRDGHFYMLGSM-GLAGSIGLGLALGLSRKVIVVDGDGSLLMNPG 76 (157)
T ss_pred HHHHHHHHhC-C-CCEEEe--CCCH-hHHHHHHhhcCCCCEEeecch-hhHHHHHHHHHhcCCCcEEEEECchHHHhccc
Confidence 4455666666 3 334443 3332 222223 23557888763321 1123367777765347777774 55644332
Q ss_pred HHHHHHHhcC-CCCEEEEE-eCCCccCCCC--CCcCcHHHHHHhcCCCCcEEEeeCCHHHHHHHHHHHhhhCCCCEEEEe
Q 004946 483 DQVVNDVDQQ-RLPVRFVI-TSAGLVGSDG--PTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRY 558 (722)
Q Consensus 483 dqi~~~~a~~-~lpVv~v~-~~~G~~G~dG--~TH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~~~~Pv~ir~ 558 (722)
+ +..+... ++|+++++ ++.++ |.-+ +++...-|+.-+..--|+..+...++.|+...++.+++ .++|++|..
T Consensus 77 e--l~t~~~~~~~~i~~vV~nN~~~-g~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~-~~gp~vi~v 152 (157)
T cd02001 77 V--LLTAGEFTPLNLILVVLDNRAY-GSTGGQPTPSSNVNLEAWAAACGYLVLSAPLLGGLGSEFAGLLA-TTGPTLLHA 152 (157)
T ss_pred H--HHHHHHhcCCCEEEEEEeCccc-cccCCcCCCCCCCCHHHHHHHCCCceEEcCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 2 3344555 59987777 55443 2111 22222223332232235556677899999999999987 678998754
No 188
>PRK12474 hypothetical protein; Provisional
Probab=94.26 E-value=4.4 Score=47.04 Aligned_cols=116 Identities=9% Similarity=0.013 Sum_probs=79.5
Q ss_pred ceeecccchHHHHHHHHHHhcC-CCeeEEE-ecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCccCCCCCCcCcHHHHHH
Q 004946 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITF 521 (722)
Q Consensus 444 R~~d~GIaE~~av~~AaGlA~~-G~~p~~~-t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~d~a~ 521 (722)
|++.+ -.|++++.+|-|.|.. |.-.+|. |+.+.+..++--+ ..+-.-+.||+++.............||......+
T Consensus 45 ~~i~~-rhE~~A~~mAdgYaR~tg~~gv~~~t~GpG~~N~~~gl-~~A~~d~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~ 122 (518)
T PRK12474 45 RPVLC-LFEGVVTGAADGYGRIAGKPAVTLLHLGPGLANGLANL-HNARRAASPIVNIVGDHAVEHLQYDAPLTSDIDGF 122 (518)
T ss_pred eEEEe-cchHHHHHHHHHHHHHhCCCEEEEEccchhHhHhHHHH-HHHhhcCCCEEEEeccCchhhcCCCCccccCHHHh
Confidence 78877 8999999999999987 5444443 5888877776543 45667799999886432221111123455545567
Q ss_pred hcCCCCcEEEeeCCHHHHHHHHHHHhhh----CCCCEEEEecCCC
Q 004946 522 MSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (722)
Q Consensus 522 ~~~iP~l~V~~Psd~~E~~~~l~~a~~~----~~~Pv~ir~~r~~ 562 (722)
++.+-.+ .+...++.++..+++.|+.. ..+||+|-+|+..
T Consensus 123 ~~~vtk~-~~~v~~~~~~~~~i~rA~~~A~~~~~GPV~l~iP~Dv 166 (518)
T PRK12474 123 ARPVSRW-VHRSASAGAVDSDVARAVQAAQSAPGGIATLIMPADV 166 (518)
T ss_pred hhcccce-eeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEechhh
Confidence 7765444 35668889999888888852 3479999999875
No 189
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=93.99 E-value=1.3 Score=52.16 Aligned_cols=116 Identities=15% Similarity=0.110 Sum_probs=80.3
Q ss_pred ceeecccchHHHHHHHHHHhcC-CCeeEE-EecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCccCCCCCCcCcHHHHHH
Q 004946 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITF 521 (722)
Q Consensus 444 R~~d~GIaE~~av~~AaGlA~~-G~~p~~-~t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~d~a~ 521 (722)
|++.+ -.|++++.+|.|.|.. |.-.+| .++.+.+..++--+ ..+...+.||+++....+........||......+
T Consensus 41 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~~~gl-a~A~~~~~Pvl~I~g~~~~~~~~~~~~Q~~d~~~l 118 (579)
T TIGR03457 41 RFIPV-VHEQGAGHMADGFARVTGRMSMVIGQNGPGVTNCVTAI-AAAYWAHTPVVIVTPEAGTKTIGLGGFQEADQLPM 118 (579)
T ss_pred eEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHH-HHHhhcCCCEEEEeCCCccccCCCCCCcccchhhh
Confidence 67777 8999999999999976 555554 35788887777544 56677899999986433321111234776666677
Q ss_pred hcCCCCcEEEeeCCHHHHHHHHHHHhhh---CCCCEEEEecCCC
Q 004946 522 MSCLPNMIVMAPSDEDELVDMVATVASI---DDRPVCFRYPRGA 562 (722)
Q Consensus 522 ~~~iP~l~V~~Psd~~E~~~~l~~a~~~---~~~Pv~ir~~r~~ 562 (722)
++.+-.+ .+...++.++...+..|+.. ..+||+|-+|+..
T Consensus 119 ~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~Dv 161 (579)
T TIGR03457 119 FQEFTKY-QGHVRHPSRMAEVLNRCFERAWREMGPAQLNIPRDY 161 (579)
T ss_pred hhcceeE-EEecCCHHHHHHHHHHHHHHHhcCCCCEEEEeCcch
Confidence 7765443 35556778887777777652 3479999999865
No 190
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=93.79 E-value=1.2 Score=46.28 Aligned_cols=90 Identities=10% Similarity=0.174 Sum_probs=54.8
Q ss_pred CeeEEEec--HhhHHHHHHHHHHHHhcCCCCEEEEEeCCCccCCCCCCcCc-----------------------HHHHH-
Q 004946 467 LKPFCIIP--SAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCG-----------------------AFDIT- 520 (722)
Q Consensus 467 ~~p~~~t~--~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~-----------------------~~d~a- 520 (722)
-+|++++. ..|++..+..+ ..+...++|+++++-+.+..|.-|..++. .-|+.
T Consensus 80 ~r~VV~i~GDG~~~~m~~~eL-~ta~~~~~pv~~vVlNN~~yg~tg~q~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~ 158 (235)
T cd03376 80 DITVVAFAGDGGTADIGFQAL-SGAAERGHDILYICYDNEAYMNTGIQRSGSTPYGAWTTTTPVGKVSFGKKQPKKDLPL 158 (235)
T ss_pred CCeEEEEEcCchHHhhHHHHH-HHHHHcCCCeEEEEECCcccccCCCCCCCCCCCCCEeecCCCCccccccccccCCHHH
Confidence 57888874 55556666555 46788899988877444333311111111 01222
Q ss_pred HhcC--CCCcEEEeeCCHHHHHHHHHHHhhhCCCCEEEEe
Q 004946 521 FMSC--LPNMIVMAPSDEDELVDMVATVASIDDRPVCFRY 558 (722)
Q Consensus 521 ~~~~--iP~l~V~~Psd~~E~~~~l~~a~~~~~~Pv~ir~ 558 (722)
+.+. ++.+..+...++.|+...++++++ .++|++|-.
T Consensus 159 iA~a~G~~~~~~~~v~~~~el~~al~~a~~-~~gP~lIev 197 (235)
T cd03376 159 IMAAHNIPYVATASVAYPEDLYKKVKKALS-IEGPAYIHI 197 (235)
T ss_pred HHHHcCCcEEEEEcCCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 2222 333334568999999999999987 688998854
No 191
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=93.72 E-value=0.63 Score=49.94 Aligned_cols=103 Identities=7% Similarity=0.076 Sum_probs=66.4
Q ss_pred HHHHHHHHHhcC------CCeeEEEec--HhhHHHHHHHHHHHHhcCCCCEEEEEeCCCc---cC---------------
Q 004946 454 HAVTFSAGLACG------GLKPFCIIP--SAFLQRAYDQVVNDVDQQRLPVRFVITSAGL---VG--------------- 507 (722)
Q Consensus 454 ~av~~AaGlA~~------G~~p~~~t~--~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~---~G--------------- 507 (722)
+..++|.|++.+ +-..++++. +.+.+-++ +-++.++..++||++++-.-.. +|
T Consensus 73 ~~~~~A~G~a~A~~~~~~~~~~Vva~~GDG~~~~~g~-~~l~~A~~~~~~v~~vv~dN~~~~~TGgQ~S~~Tp~ga~t~t 151 (300)
T PRK11864 73 ATAAVASGIEEALKARGEKGVIVVGWAGDGGTADIGF-QALSGAAERNHDILYIMYDNEAYMNTGIQRSSSTPYGAWTTT 151 (300)
T ss_pred ChHHHHHHHHHHHHhhCCCCcEEEEEEccCccccccH-HHHHHHHHhCcCEEEEEECCeeeecCCCCCCCCCcCCCcccc
Confidence 344556666554 335666553 55566666 4457888999999998833222 11
Q ss_pred -CCCC--CcCcHHHHHHhcCCCCcEEEeeCCHHHHHHHHHHHhhhCCCCEEEEe
Q 004946 508 -SDGP--TQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRY 558 (722)
Q Consensus 508 -~dG~--TH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~~~~Pv~ir~ 558 (722)
..|. ..-....+.....+|-+....|+++.++...++.|++ .++|.+|..
T Consensus 152 sp~G~~~~kkdi~~i~~a~g~~yVA~~~~~~~~~~~~~i~~A~~-~~Gps~I~~ 204 (300)
T PRK11864 152 TPGGKREHKKPVPDIMAAHKVPYVATASIAYPEDFIRKLKKAKE-IRGFKFIHL 204 (300)
T ss_pred CCCCCcCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 0010 1112344555556777888999999999999999987 688998854
No 192
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=93.72 E-value=0.86 Score=44.39 Aligned_cols=113 Identities=14% Similarity=0.110 Sum_probs=74.1
Q ss_pred ceeecccchHHHHHHHHHHhcCCCeeEEE--ecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCc--cCCCCCCc-----C
Q 004946 444 RYFDVGMAEQHAVTFSAGLACGGLKPFCI--IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQ-----C 514 (722)
Q Consensus 444 R~~d~GIaE~~av~~AaGlA~~G~~p~~~--t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH-----~ 514 (722)
|++.+ -.|++++.+|.|.+..- +|-++ +..+.+..+...+ ..+...+.||+++...... .+.....| +
T Consensus 37 ~~i~~-rhE~~A~~mA~gyar~t-~~gv~~~t~GpG~~n~~~gl-~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~ 113 (162)
T cd07038 37 RWVGN-CNELNAGYAADGYARVK-GLGALVTTYGVGELSALNGI-AGAYAEHVPVVHIVGAPSTKAQASGLLLHHTLGDG 113 (162)
T ss_pred eEEee-CCHHHHHHHHHHHHHhh-CCEEEEEcCCccHHHHHHHH-HHHHHcCCCEEEEecCCCccccccccceeeccccc
Confidence 55555 89999999999999986 44443 3677787777655 4667789999998643221 12211123 2
Q ss_pred cHH-HHHHhcCCCCcEEEeeCCHHHHHHHHHHHhhh---CCCCEEEEecC
Q 004946 515 GAF-DITFMSCLPNMIVMAPSDEDELVDMVATVASI---DDRPVCFRYPR 560 (722)
Q Consensus 515 ~~~-d~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~---~~~Pv~ir~~r 560 (722)
... ...+++.+-.+ .....++.++..+++.|+.. ..+||+|-+||
T Consensus 114 ~~~d~~~~~~~~tk~-~~~v~~~~~i~~~v~~A~~~a~s~~gPV~l~iP~ 162 (162)
T cd07038 114 DFDVFLKMFEEITCA-AARLTDPENAAEEIDRVLRTALRESRPVYIEIPR 162 (162)
T ss_pred chHHHHHHHHhheeE-EEEeCCHHHHHHHHHHHHHHHHHCCCCEEEEccC
Confidence 222 35677765544 34456778888888777753 35799998775
No 193
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=93.69 E-value=2.6 Score=43.80 Aligned_cols=117 Identities=11% Similarity=0.154 Sum_probs=64.4
Q ss_pred CCCceeecccchHHHHHHHHHHhc----C------CCeeEEEec--HhhHHHHHHHHHHHHhcCCCCEEEEEeCCCccCC
Q 004946 441 FPERYFDVGMAEQHAVTFSAGLAC----G------GLKPFCIIP--SAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGS 508 (722)
Q Consensus 441 ~p~R~~d~GIaE~~av~~AaGlA~----~------G~~p~~~t~--~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~ 508 (722)
+|.++++..+.-...++.+..+|. . --++++++. ..|++..+-.+ ..+...++|+++++-+.+..|.
T Consensus 51 ~~~~~~~~~~~~~g~mG~GlpaAiGA~~a~~~~~~p~~~Vv~i~GDG~~~~~g~~~l-~ta~~~~l~i~ivVlNN~~yg~ 129 (237)
T cd02018 51 WAVPWVNSLFEDANAVASGLKRGLKARFPKDRELDKKKDVVVIGGDGATYDIGFGAL-SHSLFRGEDITVIVLDNEVYSN 129 (237)
T ss_pred cCCCeeeccccCHHHHHHHHHHHHHhhcccccccCCCCcEEEEeCchHHHhccHHHH-HHHHHcCCCeEEEEECCccccC
Confidence 455666665544466665444443 2 136677764 54554455333 3445689998887743332221
Q ss_pred CCCCcC--------------c----HHHH-HHhc--CCCCcEEEeeCCHHHHHHHHHHHhhhCCCCEEEEe
Q 004946 509 DGPTQC--------------G----AFDI-TFMS--CLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRY 558 (722)
Q Consensus 509 dG~TH~--------------~----~~d~-a~~~--~iP~l~V~~Psd~~E~~~~l~~a~~~~~~Pv~ir~ 558 (722)
-+.+++ + .-|+ .+.+ .++......+.++.|+..++++|++..++|++|-.
T Consensus 130 ~~~q~~~~~~~g~~~~~~~~~~~~~~~D~~~iA~a~G~~~~~~~~v~~~~~l~~al~~al~~~~GP~lI~v 200 (237)
T cd02018 130 TGGQRSGATPLGADSKMAPAGKKEDKKDLVLIAATHGCVYVARLSPALKKHFLKVVKEAISRTDGPTFIHA 200 (237)
T ss_pred CCCCCCCCCcCCCcccccCCCCcCCCCCHHHHHHHCCCCEEEEEccCCHHHHHHHHHHHHhcCCCCEEEEE
Confidence 111111 0 0122 2222 33444444599999999999999853578998854
No 194
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=93.64 E-value=0.87 Score=44.95 Aligned_cols=146 Identities=15% Similarity=0.119 Sum_probs=80.3
Q ss_pred HHHHHHHHHhcCCCEEEEecCCCCcc--chHHHHHhCCCceeeccc-chH-HHHHHHHHHhcCC-CeeEEEe--cHhhHH
Q 004946 407 FIEALVMEAEKDKDIVVVHAGMEMDL--SLQLFQEKFPERYFDVGM-AEQ-HAVTFSAGLACGG-LKPFCII--PSAFLQ 479 (722)
Q Consensus 407 ~~~~L~~~~~~d~~iv~i~ad~~~~~--~l~~f~~~~p~R~~d~GI-aE~-~av~~AaGlA~~G-~~p~~~t--~~~Fl~ 479 (722)
+-++|.+.+..| . ++..|.+... ....+.-..|.+++..+. .=. .+++.|.|++++. -++++++ -..|++
T Consensus 7 ~~~~l~~~~~~~--~-ii~~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~~~~aiGa~~a~~~~~vv~i~GDG~f~~ 83 (178)
T cd02014 7 VAAELNKRAPDD--A-IFTIDVGNVTVWAARHLRMNGKQRFILSGLLATMGNGLPGAIAAKLAYPDRQVIALSGDGGFAM 83 (178)
T ss_pred HHHHHHhHCCCC--e-EEEEcCcHHHHHHHHhcccCCCCcEEcCCCCchhhhHHHHHHHHHHhCCCCcEEEEEcchHHHh
Confidence 444555544332 2 2333544322 123344455778886543 221 2455666766653 3455555 466765
Q ss_pred HHHHHHHHHHhcCCCCEEEEEeCCCccCC--------CCC-Cc--CcHHHHHHhcCCCCcEEEeeCCHHHHHHHHHHHhh
Q 004946 480 RAYDQVVNDVDQQRLPVRFVITSAGLVGS--------DGP-TQ--CGAFDITFMSCLPNMIVMAPSDEDELVDMVATVAS 548 (722)
Q Consensus 480 ra~dqi~~~~a~~~lpVv~v~~~~G~~G~--------dG~-TH--~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~ 548 (722)
-..+ +..+...++|+++++-+.|..|. .++ .+ ....|+.-+..--|+..+...++.|+...++.+++
T Consensus 84 ~~~e--l~t~~~~~lp~~~iv~NN~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~~~~el~~~l~~a~~ 161 (178)
T cd02014 84 LMGD--LITAVKYNLPVIVVVFNNSDLGFIKWEQEVMGQPEFGVDLPNPDFAKIAEAMGIKGIRVEDPDELEAALDEALA 161 (178)
T ss_pred hHHH--HHHHHHhCCCcEEEEEECCchhHHHHHHHHhcCCceeccCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHh
Confidence 5433 34577889998777744332120 011 11 11123332332237778888999999999999986
Q ss_pred hCCCCEEEEe
Q 004946 549 IDDRPVCFRY 558 (722)
Q Consensus 549 ~~~~Pv~ir~ 558 (722)
.++|++|-.
T Consensus 162 -~~~p~liev 170 (178)
T cd02014 162 -ADGPVVIDV 170 (178)
T ss_pred -CCCCEEEEE
Confidence 578998855
No 195
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=93.50 E-value=0.6 Score=46.39 Aligned_cols=115 Identities=18% Similarity=0.238 Sum_probs=67.2
Q ss_pred hCCCceeeccc-c-hHHHHHHHHHHhcCC-CeeEEEe--cHhhHHHHHHHHHHHHhcCCCCEEEEE-eCCCcc-------
Q 004946 440 KFPERYFDVGM-A-EQHAVTFSAGLACGG-LKPFCII--PSAFLQRAYDQVVNDVDQQRLPVRFVI-TSAGLV------- 506 (722)
Q Consensus 440 ~~p~R~~d~GI-a-E~~av~~AaGlA~~G-~~p~~~t--~~~Fl~ra~dqi~~~~a~~~lpVv~v~-~~~G~~------- 506 (722)
..|.+|+..+- . =-.++..|.|++++. -++++++ -..|+...-+ +..++..++|+++++ +..+..
T Consensus 38 ~~~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i~GDG~f~~~~~e--L~ta~~~~lpi~ivV~nN~~~~~~~~~~~ 115 (186)
T cd02015 38 KKPRSWLTSGGLGTMGFGLPAAIGAKVARPDKTVICIDGDGSFQMNIQE--LATAAQYNLPVKIVILNNGSLGMVRQWQE 115 (186)
T ss_pred CCCCeEEeCCCccchhchHHHHHHHHHhCCCCeEEEEEcccHHhccHHH--HHHHHHhCCCeEEEEEECCccHHHHHHHH
Confidence 45788886532 1 123556777777663 3556655 4666654433 355778899987766 444321
Q ss_pred ---CCC-CCCcC-cHHHHH-HhcCCCCcEEEeeCCHHHHHHHHHHHhhhCCCCEEEEe
Q 004946 507 ---GSD-GPTQC-GAFDIT-FMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRY 558 (722)
Q Consensus 507 ---G~d-G~TH~-~~~d~a-~~~~iP~l~V~~Psd~~E~~~~l~~a~~~~~~Pv~ir~ 558 (722)
+.. ..++. ...|.. +.+.+ |+..+.-.+..|+...+++|++ .++|++|-.
T Consensus 116 ~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~-~~~p~liev 171 (186)
T cd02015 116 LFYEGRYSHTTLDSNPDFVKLAEAY-GIKGLRVEKPEELEAALKEALA-SDGPVLLDV 171 (186)
T ss_pred HHcCCceeeccCCCCCCHHHHHHHC-CCceEEeCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 000 00111 112322 33333 5666677889999999999986 688999854
No 196
>PRK05858 hypothetical protein; Provisional
Probab=93.45 E-value=1.7 Score=50.81 Aligned_cols=118 Identities=13% Similarity=0.076 Sum_probs=81.7
Q ss_pred CCceeecccchHHHHHHHHHHhcCCCeeEEE--ecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCccCCCCCCcCcHHHH
Q 004946 442 PERYFDVGMAEQHAVTFSAGLACGGLKPFCI--IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDI 519 (722)
Q Consensus 442 p~R~~d~GIaE~~av~~AaGlA~~G~~p~~~--t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~d~ 519 (722)
.=|++.+ -.|++++.+|.|.|....+|-++ ++.+.+..++--+ ..+...+.||+++.......-.+-.++|.....
T Consensus 42 ~i~~i~~-rhE~~A~~~AdGyar~tg~~gv~~~t~GpG~~n~~~~i-~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~ 119 (542)
T PRK05858 42 GIRLIDV-RHEQTAAFAAEAWAKLTRVPGVAVLTAGPGVTNGMSAM-AAAQFNQSPLVVLGGRAPALRWGMGSLQEIDHV 119 (542)
T ss_pred CCCEEee-ccHHHHHHHHHHHHHhcCCCeEEEEcCCchHHHHHHHH-HHHHhcCCCEEEEeCCCCcccCCCCCCcccchh
Confidence 3478877 89999999999999985454443 4677777777544 677788999998764332211112346666556
Q ss_pred HHhcCCCCcEEEeeCCHHHHHHHHHHHhhh----CCCCEEEEecCCC
Q 004946 520 TFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (722)
Q Consensus 520 a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~----~~~Pv~ir~~r~~ 562 (722)
.+++.+-.+ .....++.++...+..|+.. ..+||+|.+|...
T Consensus 120 ~l~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv 165 (542)
T PRK05858 120 PFVAPVTKF-AATAQSAENAGRLVDQALQAAVTPHRGPVFVDFPMDH 165 (542)
T ss_pred hhhhhhhce-EEEeCCHHHHHHHHHHHHHHHcCCCCCeEEEEcChhh
Confidence 677776554 45667788888888877753 3579999998764
No 197
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.44 E-value=1.3 Score=52.25 Aligned_cols=117 Identities=12% Similarity=0.058 Sum_probs=80.9
Q ss_pred CceeecccchHHHHHHHHHHhcCCCe-eEEE-ecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCccCCCCCCcCcHHHHH
Q 004946 443 ERYFDVGMAEQHAVTFSAGLACGGLK-PFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDIT 520 (722)
Q Consensus 443 ~R~~d~GIaE~~av~~AaGlA~~G~~-p~~~-t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~d~a 520 (722)
=|++.+ -.|++++.+|.|.|....+ .+|. ++.+.+..++.-+ ..+-..+.||+++..........-..+|......
T Consensus 43 i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~vt~GPG~~N~l~gl-~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~ 120 (574)
T PRK06466 43 VEHILV-RHEQAATHMADGYARATGKTGVVLVTSGPGATNAITGI-ATAYMDSIPMVVLSGQVPSTLIGEDAFQETDMVG 120 (574)
T ss_pred ceEEEe-CcHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHH-HHHHhcCCCEEEEecCCCccccCCCcccccchhh
Confidence 367766 8999999999999987444 3333 4788887777544 5667789999998743332111112466666666
Q ss_pred HhcCCCCcEEEeeCCHHHHHHHHHHHhhh----CCCCEEEEecCCC
Q 004946 521 FMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (722)
Q Consensus 521 ~~~~iP~l~V~~Psd~~E~~~~l~~a~~~----~~~Pv~ir~~r~~ 562 (722)
+++.+-.+ .+...++.++..++..|+.. ..+||+|.+|...
T Consensus 121 l~~~itk~-s~~v~~~~~~~~~~~rA~~~A~~~~~GPV~l~iP~Dv 165 (574)
T PRK06466 121 ISRPIVKH-SFMVKHASEIPEIIKKAFYIAQSGRPGPVVVDIPKDM 165 (574)
T ss_pred hhhcccee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhH
Confidence 77776655 45566788888888777753 2589999999864
No 198
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.44 E-value=1.7 Score=51.21 Aligned_cols=114 Identities=13% Similarity=0.129 Sum_probs=80.9
Q ss_pred ceeecccchHHHHHHHHHHhcC-CCeeEEE-ecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCc--cCCCCCCcCcHHHH
Q 004946 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDI 519 (722)
Q Consensus 444 R~~d~GIaE~~av~~AaGlA~~-G~~p~~~-t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~d~ 519 (722)
|++.+ -.|++++.+|.|.|.. |...+|. ++.+.+..++--+ ..+-..+.||+++...... .+. ..+|.....
T Consensus 44 ~~i~~-rhE~~A~~mAdgYar~tg~~gv~~~t~GPG~~n~l~gi-~~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~~ 119 (574)
T PRK07979 44 DHVLV-RHEQAAVHMADGLARATGEVGVVLVTSGPGATNAITGI-ATAYMDSIPLVVLSGQVATSLIGY--DAFQECDMV 119 (574)
T ss_pred eEEEe-CcHHHHHHHHHHHHHHhCCceEEEECCCccHhhhHHHH-HHHhhcCCCEEEEECCCChhccCC--CCCceecHH
Confidence 67776 8899999999999986 6555555 4888887777544 5666779999988744332 232 235555555
Q ss_pred HHhcCCCCcEEEeeCCHHHHHHHHHHHhhh----CCCCEEEEecCCC
Q 004946 520 TFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (722)
Q Consensus 520 a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~----~~~Pv~ir~~r~~ 562 (722)
.+++.+-.+ .+...+++++..+++.|+.. ..+||+|.+|...
T Consensus 120 ~l~~~~tk~-~~~v~~~~~~~~~l~~A~~~A~~~~~GPv~l~iP~Dv 165 (574)
T PRK07979 120 GISRPVVKH-SFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLPKDI 165 (574)
T ss_pred HHhhcccce-EEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChhh
Confidence 677765544 35556889998888888763 3579999998764
No 199
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=93.38 E-value=2 Score=50.33 Aligned_cols=122 Identities=15% Similarity=0.192 Sum_probs=86.5
Q ss_pred HHHHHhCCCceeecccchHHHHHHHHHHhcC-CCeeEEE-ecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCc--cCCCC
Q 004946 435 QLFQEKFPERYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDG 510 (722)
Q Consensus 435 ~~f~~~~p~R~~d~GIaE~~av~~AaGlA~~-G~~p~~~-t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG 510 (722)
+.|.+. .=||+.+ --||.|+.+|.|.|.. |.--+|. |..+.+..+..-+ .++-+-+.|++++...... .|.
T Consensus 33 dal~~~-~i~~I~~-RHEq~Aa~mAdgyar~TGkpgV~~~tsGPGatN~~tgl-a~A~~d~~Pll~itGqv~~~~~g~-- 107 (550)
T COG0028 33 DALYDS-GIRHILV-RHEQGAAFAADGYARATGKPGVCLVTSGPGATNLLTGL-ADAYMDSVPLLAITGQVPTSLIGT-- 107 (550)
T ss_pred HHHHhC-CCcEEEe-ccHHHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHH-HHHHhcCCCEEEEeCCccccccCc--
Confidence 344444 4588888 8999999999999997 5555554 4788887777544 6777789998887642221 232
Q ss_pred CCcCcHHHHHHhcCCCCcEEEeeCCHHHHHHHHHHHhhh----CCCCEEEEecCCC
Q 004946 511 PTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (722)
Q Consensus 511 ~TH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~----~~~Pv~ir~~r~~ 562 (722)
..+|......+++.+-.+ .+...+++|+-..++.|+.. ..+||+|-+|+..
T Consensus 108 ~afQe~D~~~l~~p~tk~-~~~v~~~~~ip~~i~~Af~~A~sgrpGpv~i~iP~Dv 162 (550)
T COG0028 108 DAFQEVDQVGLFRPITKY-NFEVRSPEDIPEVVARAFRIALSGRPGPVVVDLPKDV 162 (550)
T ss_pred chhhhcchhhHhhhhhee-EEEeCCHHHHHHHHHHHHHHHhcCCCceEEEEcChhH
Confidence 346666555666655444 47788999999999999874 3369999999864
No 200
>PRK08611 pyruvate oxidase; Provisional
Probab=93.36 E-value=1.6 Score=51.39 Aligned_cols=116 Identities=12% Similarity=0.049 Sum_probs=78.7
Q ss_pred ceeecccchHHHHHHHHHHhcC-CCeeEEE-ecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCccCCCCCCcCcHHHHHH
Q 004946 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITF 521 (722)
Q Consensus 444 R~~d~GIaE~~av~~AaGlA~~-G~~p~~~-t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~d~a~ 521 (722)
|++.+ ..|++++.+|.|.|.. |...+|. |+.+.+..++.-+ ..+...+.||+++..........-..+|......+
T Consensus 45 ~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~l~gl-a~A~~~~~Pvl~ItG~~~~~~~~~~~~q~~d~~~l 122 (576)
T PRK08611 45 KFIQV-RHEEVAALAAAAYAKLTGKIGVCLSIGGPGAIHLLNGL-YDAKMDHVPVLALAGQVTSDLLGTDFFQEVNLEKM 122 (576)
T ss_pred eEEEe-CcHHHHHHHHHHHHHHhCCceEEEECCCCcHHHHHHHH-HHHhhcCCCEEEEecCCcccccCCCCccccCHHHH
Confidence 77775 8999999999999976 5333333 4788887777554 56677899999987443331111123555555577
Q ss_pred hcCCCCcEEEeeCCHHHHHHHHHHHhhh---CCCCEEEEecCCC
Q 004946 522 MSCLPNMIVMAPSDEDELVDMVATVASI---DDRPVCFRYPRGA 562 (722)
Q Consensus 522 ~~~iP~l~V~~Psd~~E~~~~l~~a~~~---~~~Pv~ir~~r~~ 562 (722)
++.+-.+ .+...+++++..++..|+.. ..+||+|-+|...
T Consensus 123 ~~~itk~-~~~v~~~~~~~~~l~~A~~~A~~~~GPV~l~iP~Dv 165 (576)
T PRK08611 123 FEDVAVY-NHQIMSAENLPEIVNQAIRTAYEKKGVAVLTIPDDL 165 (576)
T ss_pred hhcccce-eEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeChhh
Confidence 7776544 34566777888777776642 3589999998764
No 201
>PRK08266 hypothetical protein; Provisional
Probab=93.24 E-value=1.8 Score=50.55 Aligned_cols=117 Identities=18% Similarity=0.185 Sum_probs=80.0
Q ss_pred CceeecccchHHHHHHHHHHhcCCCee-EE-EecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCc--cCCC-CCCcCcHH
Q 004946 443 ERYFDVGMAEQHAVTFSAGLACGGLKP-FC-IIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSD-GPTQCGAF 517 (722)
Q Consensus 443 ~R~~d~GIaE~~av~~AaGlA~~G~~p-~~-~t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~d-G~TH~~~~ 517 (722)
=|++.+ ..|++++.+|.|.|..--+| +| .|+.+.+..++.-+ ..+...+.||+++...... .+.+ +.+|+...
T Consensus 44 i~~v~~-~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N~~~gi-~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d 121 (542)
T PRK08266 44 IRVIHT-RHEQAAGYMAFGYARSTGRPGVCSVVPGPGVLNAGAAL-LTAYGCNSPVLCLTGQIPSALIGKGRGHLHEMPD 121 (542)
T ss_pred CeEEee-ccHHHHHHHHHHHHHHhCCCeEEEECCCCcHHHHHHHH-HHHHhhCCCEEEEecCCChhhccCCCCcceeccc
Confidence 478877 99999999999999874444 33 35888887777544 6777889999988633221 1222 23444345
Q ss_pred HHHHhcCCCCcEEEeeCCHHHHHHHHHHHhhh----CCCCEEEEecCCC
Q 004946 518 DITFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (722)
Q Consensus 518 d~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~----~~~Pv~ir~~r~~ 562 (722)
...+++.+-.+ .....+++++..+++.|+.. ..+||+|-+|...
T Consensus 122 ~~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~dv 169 (542)
T PRK08266 122 QLATLRSFTKW-AERIEHPSEAPALVAEAFQQMLSGRPRPVALEMPWDV 169 (542)
T ss_pred HhhHHhhhcce-EEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEeCHhH
Confidence 55677776554 45556778887777777753 3579999998753
No 202
>PRK07586 hypothetical protein; Validated
Probab=93.23 E-value=2 Score=49.81 Aligned_cols=202 Identities=12% Similarity=0.039 Sum_probs=113.4
Q ss_pred ceeecccchHHHHHHHHHHhcC-CCeeEEE-ecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCccCCCCCCcCcHHHHHH
Q 004946 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITF 521 (722)
Q Consensus 444 R~~d~GIaE~~av~~AaGlA~~-G~~p~~~-t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~d~a~ 521 (722)
|++.+ -.|++++.+|.|.|.. |...+|. ++.+.+..+.--+ ..+...+.||+++..........-..||......+
T Consensus 41 ~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~~gl-~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~ 118 (514)
T PRK07586 41 RCVLG-LFEGVATGAADGYARMAGKPAATLLHLGPGLANGLANL-HNARRARTPIVNIVGDHATYHRKYDAPLTSDIEAL 118 (514)
T ss_pred eEEEe-ccHHHHHHHHHHHHHHHCCCEEEEecccHHHHHHHHHH-HHHHhcCCCEEEEecCCchhccCCCcccccchhhh
Confidence 77777 8999999999999987 5434343 5888887777544 56677899999886432221111122454444466
Q ss_pred hcCCCCcEEEeeCCHHHHHHHHHHHhhh----CCCCEEEEecCCCcccc-cCCCCCCC--Cc-----cccccE-EEEEe-
Q 004946 522 MSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGAIVRT-DLPGYRGI--PI-----EEIGKG-KVLVE- 587 (722)
Q Consensus 522 ~~~iP~l~V~~Psd~~E~~~~l~~a~~~----~~~Pv~ir~~r~~~~~~-~~p~~~~~--~~-----~~igk~-~vl~e- 587 (722)
++.+-.+ .+...++.++..+++.|+.. ..+||+|-+|....... +.+..... .. ..+.+. +.+.+
T Consensus 119 ~~~vtk~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~A 197 (514)
T PRK07586 119 ARPVSGW-VRRSESAADVAADAAAAVAAARGAPGQVATLILPADVAWSEGGPPAPPPPAPAPAAVDPAAVEAAAAALRSG 197 (514)
T ss_pred hccccce-eeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEeccchhccccccccccCCCCCCCCCCHHHHHHHHHHHHhc
Confidence 6655333 45567778887777777753 35799999998642211 11100000 00 000111 11222
Q ss_pred CCcEEEEEechhhHHHHHHHHHHHh-cCCcEEE--ee-----cCcccc-----chHHHHHHHhcCCCeEEEEcC
Q 004946 588 GKDVALLGYGAMVQNCLKARALLSK-LGIDVTV--AD-----ARFCKP-----LDIKLVRELCQNHTFLITVEE 648 (722)
Q Consensus 588 G~dv~lva~Gs~v~~aleAa~~L~~-~Gi~v~V--id-----l~~lkP-----ld~e~i~~~~~~~~~vvvvEe 648 (722)
.+-+.|++.|.....+.++...|.+ .|+-|-. +. -+-+-| .-.+...+.+++.+.||++--
T Consensus 198 ~rPvi~~G~g~~~~~a~~~l~~lae~l~~pV~t~~~~~~~~~gkg~~~~~~~~~~~~~~~~~~~~aDlvl~vG~ 271 (514)
T PRK07586 198 EPTVLLLGGRALRERGLAAAARIAAATGARLLAETFPARMERGAGRPAVERLPYFAEQALAQLAGVRHLVLVGA 271 (514)
T ss_pred CCCEEEeCCcccchhHHHHHHHHHHHHCCCEEecccccccccCCCCCCcccccchHHHHHHHHhcCCEEEEECC
Confidence 3467777777765556566555544 3666522 10 111222 112334456677788887753
No 203
>PRK07064 hypothetical protein; Provisional
Probab=93.21 E-value=1.9 Score=50.31 Aligned_cols=116 Identities=12% Similarity=0.132 Sum_probs=79.5
Q ss_pred ceeecccchHHHHHHHHHHhcC-CCeeEE-EecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCc--cCCC-CCCcCcHHH
Q 004946 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSD-GPTQCGAFD 518 (722)
Q Consensus 444 R~~d~GIaE~~av~~AaGlA~~-G~~p~~-~t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~d-G~TH~~~~d 518 (722)
|++.+ ..|++++.+|.|.|.. |...+| .++.+.+..++.-+ ..+...+.||+++...... .+.+ +..|+....
T Consensus 43 ~~i~~-~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N~~~~i-~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~ 120 (544)
T PRK07064 43 RFVPA-RGEAGAVNMADAHARVSGGLGVALTSTGTGAGNAAGAL-VEALTAGTPLLHITGQIETPYLDQDLGYIHEAPDQ 120 (544)
T ss_pred cEEee-ccHHHHHHHHHHHHHhcCCCeEEEeCCCCcHHHHHHHH-HHHHhcCCCEEEEeCCCCcccccCCCcccccccCH
Confidence 77776 8999999999999987 543443 35788887777544 5667789999988632221 2322 234554455
Q ss_pred HHHhcCCCCcEEEeeCCHHHHHHHHHHHhhh----CCCCEEEEecCCC
Q 004946 519 ITFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (722)
Q Consensus 519 ~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~----~~~Pv~ir~~r~~ 562 (722)
..+++.+-.+ .+...++.++..++..|+.. ..+||+|-+|...
T Consensus 121 ~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv 167 (544)
T PRK07064 121 LTMLRAVSKA-AFRVRSAETALATIREAVRVALTAPTGPVSVEIPIDI 167 (544)
T ss_pred HHHhhhhcce-EEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEeCHhH
Confidence 6777766554 35556788887777777753 3689999998753
No 204
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=93.20 E-value=1.3 Score=43.70 Aligned_cols=116 Identities=14% Similarity=0.144 Sum_probs=68.2
Q ss_pred hCCCceeeccc--chHHHHHHHHHHhcC-CCeeEEEec--HhhHHHHHHHHHHHHhcCCCCEEEEE-eCCCccCC-----
Q 004946 440 KFPERYFDVGM--AEQHAVTFSAGLACG-GLKPFCIIP--SAFLQRAYDQVVNDVDQQRLPVRFVI-TSAGLVGS----- 508 (722)
Q Consensus 440 ~~p~R~~d~GI--aE~~av~~AaGlA~~-G~~p~~~t~--~~Fl~ra~dqi~~~~a~~~lpVv~v~-~~~G~~G~----- 508 (722)
..|.||+..+- +=-..+..|.|++++ .-++++++. ..|+... |-+..+...++|+++++ ...|+ |.
T Consensus 36 ~~~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i~GDG~f~m~~--~eL~ta~~~~l~vi~vV~NN~~~-g~~~~~~ 112 (177)
T cd02010 36 YAPNTCLISNGLATMGVALPGAIGAKLVYPDRKVVAVSGDGGFMMNS--QELETAVRLKIPLVVLIWNDNGY-GLIKWKQ 112 (177)
T ss_pred CCCCCEEeCCCChhhhhHHHHHHHHHHhCCCCcEEEEEcchHHHhHH--HHHHHHHHHCCCeEEEEEECCcc-hHHHHHH
Confidence 45788886532 112344567777765 456677764 5565443 32345677799988876 44443 21
Q ss_pred ---CCC-CcC--cHHHHHHhcCCCCcEEEeeCCHHHHHHHHHHHhhhCCCCEEEEec
Q 004946 509 ---DGP-TQC--GAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRYP 559 (722)
Q Consensus 509 ---dG~-TH~--~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~~~~Pv~ir~~ 559 (722)
.+. .+. ...|..-+..--|..-+...++.|+...+++|++ .++|.+|-..
T Consensus 113 ~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~-~~~p~liev~ 168 (177)
T cd02010 113 EKEYGRDSGVDFGNPDFVKYAESFGAKGYRIESADDLLPVLERALA-ADGVHVIDCP 168 (177)
T ss_pred HHhcCCcccCcCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHh-CCCCEEEEEE
Confidence 000 110 0113322222226667788999999999999986 6889998654
No 205
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=93.16 E-value=1.7 Score=50.83 Aligned_cols=116 Identities=11% Similarity=0.062 Sum_probs=80.1
Q ss_pred ceeecccchHHHHHHHHHHhcC-CCeeEE-EecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCccCCCCCCcCcHHHHHH
Q 004946 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITF 521 (722)
Q Consensus 444 R~~d~GIaE~~av~~AaGlA~~-G~~p~~-~t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~d~a~ 521 (722)
|++.+ -.|++++.+|.|.|.. |.-.+| .++.+.+..++.-+ ..+-..+.||+++.............+|......+
T Consensus 41 ~~i~~-~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l~~i-~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~ 118 (558)
T TIGR00118 41 EHILV-RHEQGAAHAADGYARASGKVGVVLVTSGPGATNLVTGI-ATAYMDSIPMVVFTGQVPTSLIGSDAFQEADILGI 118 (558)
T ss_pred eEEEe-CcHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHH-HHHHhcCCCEEEEecCCCccccCCCCCcccChhhh
Confidence 77777 8999999999999986 533333 34888887777544 56677899999886433221111224565555567
Q ss_pred hcCCCCcEEEeeCCHHHHHHHHHHHhhh----CCCCEEEEecCCC
Q 004946 522 MSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (722)
Q Consensus 522 ~~~iP~l~V~~Psd~~E~~~~l~~a~~~----~~~Pv~ir~~r~~ 562 (722)
++.+-.+. ....++.++..++..|+.. ..+||+|.+|...
T Consensus 119 ~~~~tk~~-~~v~~~~~~~~~v~~A~~~A~~~~~GPV~i~iP~dv 162 (558)
T TIGR00118 119 TMPITKHS-FQVKSAEDIPRIIKEAFHIATTGRPGPVLVDLPKDV 162 (558)
T ss_pred hcCcccee-EEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEcChhh
Confidence 77665543 4456788888888888763 2579999999764
No 206
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=93.15 E-value=1.3 Score=47.13 Aligned_cols=147 Identities=10% Similarity=0.101 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHhcCCCEEEEecCCCCccchHHHHHhCCCceeecccchHHHHHHHHHHhcCC-CeeEEEec--HhhHHH
Q 004946 404 DDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGG-LKPFCIIP--SAFLQR 480 (722)
Q Consensus 404 ~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f~~~~p~R~~d~GIaE~~av~~AaGlA~~G-~~p~~~t~--~~Fl~r 480 (722)
..++.++|.++....++.+++ .|.|.++.+..+.+ -..++... ..++.+|.|++++. -++++++. +++++-
T Consensus 19 l~al~~al~~l~~~~~~~ivv-sdiGc~~~~~~~~~---~~~~~~~~--G~alp~A~GaklA~Pd~~VV~i~GDG~~f~i 92 (279)
T PRK11866 19 LEALRKALAELGIPPENVVVV-SGIGCSSNLPEFLN---TYGIHGIH--GRVLPIATGVKWANPKLTVIGYGGDGDGYGI 92 (279)
T ss_pred HHHHHHHHHHhcCCCCCEEEE-ECCchhhhhhhhcc---CCCccccc--ccHHHHHHHHHHHCCCCcEEEEECChHHHHc
Confidence 455666665443334454444 46665543322221 12233333 45677888887763 45666664 434555
Q ss_pred HHHHHHHHHhcCCCCEEEEEeCCCccCCCC----CCc----------C-------cHHHHHHhcCCCCcEEEeeCCHHHH
Q 004946 481 AYDQVVNDVDQQRLPVRFVITSAGLVGSDG----PTQ----------C-------GAFDITFMSCLPNMIVMAPSDEDEL 539 (722)
Q Consensus 481 a~dqi~~~~a~~~lpVv~v~~~~G~~G~dG----~TH----------~-------~~~d~a~~~~iP~l~V~~Psd~~E~ 539 (722)
++..+ ..++..++|+++++-..+..|.-| ++- . ....++.....+.+....+.++.|+
T Consensus 93 g~~eL-~tA~rrn~~i~vIV~nN~~ygmtggQ~s~~t~~g~~t~~t~~g~~~~~~d~~~iA~a~G~~~Va~~~~~~~~~l 171 (279)
T PRK11866 93 GLGHL-PHAARRNVDITYIVSNNQVYGLTTGQASPTTPRGVKTKTTPDGNIEEPFNPIALALAAGATFVARGFSGDVKHL 171 (279)
T ss_pred cHHHH-HHHHHHCcCcEEEEEEChhhhhhcccccCCCCCCceeeccCCCCCCCCCCHHHHHHHCCCCEEEEEcCCCHHHH
Confidence 56455 456788999887773332222111 110 0 2223333334454556667999999
Q ss_pred HHHHHHHhhhCCCCEEEEe
Q 004946 540 VDMVATVASIDDRPVCFRY 558 (722)
Q Consensus 540 ~~~l~~a~~~~~~Pv~ir~ 558 (722)
...++.|++ .++|++|-.
T Consensus 172 ~~~l~~Al~-~~Gps~I~v 189 (279)
T PRK11866 172 KEIIKEAIK-HKGFSFIDV 189 (279)
T ss_pred HHHHHHHHh-CCCCEEEEE
Confidence 999999987 688998854
No 207
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=93.04 E-value=1.5 Score=51.41 Aligned_cols=117 Identities=15% Similarity=0.112 Sum_probs=79.9
Q ss_pred CceeecccchHHHHHHHHHHhcCCCeeE-EE-ecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCccCCCCCCcCcHHHHH
Q 004946 443 ERYFDVGMAEQHAVTFSAGLACGGLKPF-CI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDIT 520 (722)
Q Consensus 443 ~R~~d~GIaE~~av~~AaGlA~~G~~p~-~~-t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~d~a 520 (722)
=|++.+ ..|++++.+|.|.|..-.+|- |. ++.+.+..++.-+ ..+...+.||+++.........+-..+|......
T Consensus 52 i~~i~~-~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~l~gl-~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~ 129 (564)
T PRK08155 52 IRHILA-RHEQGAGFIAQGMARTTGKPAVCMACSGPGATNLVTAI-ADARLDSIPLVCITGQVPASMIGTDAFQEVDTYG 129 (564)
T ss_pred ceEEEe-ccHHHHHHHHHHHHHHcCCCeEEEECCCCcHHHHHHHH-HHHHhcCCCEEEEeccCCcccccCCCccccchhh
Confidence 378885 999999999999999854553 33 5788887777544 5677889999988643332111112355554456
Q ss_pred HhcCCCCcEEEeeCCHHHHHHHHHHHhhh----CCCCEEEEecCCC
Q 004946 521 FMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (722)
Q Consensus 521 ~~~~iP~l~V~~Psd~~E~~~~l~~a~~~----~~~Pv~ir~~r~~ 562 (722)
+++.+-.+. +.-.++.++..++..|+.. ..+||+|-+|...
T Consensus 130 ~~~~~tk~~-~~v~~~~~~~~~i~~A~~~a~~~~~GPV~i~iP~Dv 174 (564)
T PRK08155 130 ISIPITKHN-YLVRDIEELPQVISDAFRIAQSGRPGPVWIDIPKDV 174 (564)
T ss_pred hhhccceEE-EEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhH
Confidence 666655443 3345788888888888763 2589999998754
No 208
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=93.02 E-value=1.9 Score=50.71 Aligned_cols=114 Identities=15% Similarity=0.165 Sum_probs=80.0
Q ss_pred ceeecccchHHHHHHHHHHhcC-CCeeEEE-ecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCc--cCCCCCCcCcHHHH
Q 004946 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDI 519 (722)
Q Consensus 444 R~~d~GIaE~~av~~AaGlA~~-G~~p~~~-t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~d~ 519 (722)
|++.+ -.|++++.+|.|.|.. |...+|. ++.+.+..++.-+ ..+-..+.||+++...... .+.+ .+|.....
T Consensus 50 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~~~gl-a~A~~~~~Pvl~i~G~~~~~~~~~~--~~q~~d~~ 125 (566)
T PRK07282 50 RHILA-RHEQGALHEAEGYAKSTGKLGVAVVTSGPGATNAITGI-ADAMSDSVPLLVFTGQVARAGIGKD--AFQEADIV 125 (566)
T ss_pred eEEEe-cCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHH-HHHhhcCCCEEEEecccccccCCCC--CccccChh
Confidence 88887 8999999999999987 6444444 4888887777544 5666779999998744332 2322 35555555
Q ss_pred HHhcCCCCcEEEeeCCHHHHHHHHHHHhhh----CCCCEEEEecCCC
Q 004946 520 TFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (722)
Q Consensus 520 a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~----~~~Pv~ir~~r~~ 562 (722)
.+++.+-.+. ....++.++..++..|+.. ..+||+|-+|...
T Consensus 126 ~~~~~itk~s-~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 171 (566)
T PRK07282 126 GITMPITKYN-YQIRETADIPRIITEAVHIATTGRPGPVVIDLPKDV 171 (566)
T ss_pred chhcCCCcee-EEcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCChhh
Confidence 6666655543 4456788888888887764 2589999998764
No 209
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=92.94 E-value=2.2 Score=49.72 Aligned_cols=116 Identities=14% Similarity=0.110 Sum_probs=77.1
Q ss_pred ceeecccchHHHHHHHHHHhcCCCeeEEE--ecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCccC-CCCCCcCcHHHHH
Q 004946 444 RYFDVGMAEQHAVTFSAGLACGGLKPFCI--IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVG-SDGPTQCGAFDIT 520 (722)
Q Consensus 444 R~~d~GIaE~~av~~AaGlA~~G~~p~~~--t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G-~dG~TH~~~~d~a 520 (722)
|++.+ -.|++++.+|.|.|...-+|-++ +..+.+..++.-+ ..+...+.||+++........ ..+..++......
T Consensus 50 ~~i~~-~hE~~A~~~Adgyar~tg~~~v~~vt~gpG~~N~~~gi-a~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~d~~~ 127 (530)
T PRK07092 50 RYVLG-LQEAVVVGMADGYAQATGNAAFVNLHSAAGVGNAMGNL-FTAFKNHTPLVITAGQQARSILPFEPFLAAVQAAE 127 (530)
T ss_pred CEEEE-ccHHHHHHHHHHHHHHhCCceEEEeccCchHHHHHHHH-HHHhhcCCCEEEEecCCcccccCccchhcccCHHH
Confidence 77755 89999999999999974454444 3566666666443 566778999998764333211 1233233233346
Q ss_pred HhcCCCCcEEEeeCCHHHHHHHHHHHhhh----CCCCEEEEecCCC
Q 004946 521 FMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (722)
Q Consensus 521 ~~~~iP~l~V~~Psd~~E~~~~l~~a~~~----~~~Pv~ir~~r~~ 562 (722)
+++.+-.+.. ...+++++..++..|+.. ..+||+|-+|...
T Consensus 128 l~~~~tk~~~-~v~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~d~ 172 (530)
T PRK07092 128 LPKPYVKWSI-EPARAEDVPAAIARAYHIAMQPPRGPVFVSIPYDD 172 (530)
T ss_pred hhccccccee-ecCCHHHHHHHHHHHHHHHhcCCCCcEEEEccHHH
Confidence 7787766544 347788888888887763 2469999998654
No 210
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=92.93 E-value=0.71 Score=53.83 Aligned_cols=116 Identities=12% Similarity=0.075 Sum_probs=81.7
Q ss_pred ceeecccchHHHHHHHHHHhcC-CCeeEE-EecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCccCCCCCCcCcHHHHHH
Q 004946 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITF 521 (722)
Q Consensus 444 R~~d~GIaE~~av~~AaGlA~~-G~~p~~-~t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~d~a~ 521 (722)
|++.+ -.|++++.+|.|.|.. |...+| .++.+.+..++.-+ ..+...+.||+++..........-..||......+
T Consensus 38 ~~i~~-~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l~gl-~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~~ 115 (539)
T TIGR02418 38 ELIVV-RHEQNAAFMAQAVGRITGKPGVALVTSGPGCSNLVTGL-ATANSEGDPVVAIGGQVKRADLLKLTHQSMDNVAL 115 (539)
T ss_pred CEEEe-CcHHHHHHHHHHHHHHhCCceEEEECCCCCHhHHHHHH-HHHhhcCCCEEEEeCCCcccccccCcccccchhhh
Confidence 77777 7999999999999986 544443 45888887777544 56677899999887433321111234888777788
Q ss_pred hcCCCCcEEEeeCCHHHHHHHHHHHhhh----CCCCEEEEecCCC
Q 004946 522 MSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (722)
Q Consensus 522 ~~~iP~l~V~~Psd~~E~~~~l~~a~~~----~~~Pv~ir~~r~~ 562 (722)
++.+-.+ .....++.++...+..|+.. ..+||+|.+|...
T Consensus 116 ~~~~tk~-~~~i~~~~~~~~~~~~A~~~a~~~~~GPV~l~iP~dv 159 (539)
T TIGR02418 116 FRPITKY-SAEVQDPDALSEVVANAFRAAESGKPGAAFVSLPQDV 159 (539)
T ss_pred hhcceee-eeecCCHHHHHHHHHHHHHHHhcCCCCCEEEEcChhH
Confidence 8876554 34457788888877777753 2479999998763
No 211
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=92.88 E-value=1.9 Score=46.03 Aligned_cols=143 Identities=11% Similarity=0.162 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCCCCccchHHHHHhCCCceeecccch---HHHHHHHHHHhcCC-CeeEEEec--HhhH
Q 004946 405 DCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAE---QHAVTFSAGLACGG-LKPFCIIP--SAFL 478 (722)
Q Consensus 405 ~a~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f~~~~p~R~~d~GIaE---~~av~~AaGlA~~G-~~p~~~t~--~~Fl 478 (722)
.++.++|.++.-..++.+++ .|+|.+. +.| +|++..--- -.++.+|.|++++. -++++++. .+|+
T Consensus 14 ~~~~~a~~~l~~~p~d~iiv-sdiGc~~-------~~~-~~l~~~~~~t~mG~alPaAiGaklA~Pd~~VVai~GDG~f~ 84 (287)
T TIGR02177 14 SALQRALAELNLDPEQVVVV-SGIGCSA-------KTP-HYVNVNGFHGLHGRALPVATGIKLANPHLKVIVVGGDGDLY 84 (287)
T ss_pred HHHHHHHHHhcCCCCCEEEE-ECCCccc-------ccC-CeEecCCcccccccHHHHHHHHHHHCCCCcEEEEeCchHHH
Confidence 45666776654433455444 4776543 123 555543221 23666788887764 46666664 5555
Q ss_pred HHHHHHHHHHHhcCCCCEEEEEeCCCc---cC-CCCCCc----------C-------cHHHHHHhcCCCCcEEEeeCCHH
Q 004946 479 QRAYDQVVNDVDQQRLPVRFVITSAGL---VG-SDGPTQ----------C-------GAFDITFMSCLPNMIVMAPSDED 537 (722)
Q Consensus 479 ~ra~dqi~~~~a~~~lpVv~v~~~~G~---~G-~dG~TH----------~-------~~~d~a~~~~iP~l~V~~Psd~~ 537 (722)
.-....+ ..++..++|+++++-..+. ++ ..-++- . ...-+++.....-.......+++
T Consensus 85 ~mg~~eL-~tA~r~nl~I~vIVlNN~~yGmt~gQ~sp~t~~G~~~~~~~~g~~~~~~np~~~a~A~g~g~va~~~~~~~~ 163 (287)
T TIGR02177 85 GIGGNHF-VAAGRRNVDITVIVHDNQVYGLTKGQASPTLLKGVKTKSLPYPNIQDPVNPLLLAIALGYTFVARGFSGDVA 163 (287)
T ss_pred hccHHHH-HHHHHhCcCeEEEEEECHHHHhhhcccccCccCCcceeecccCccCCCCCHHHHHHhCCCCeEEEEecCCHH
Confidence 4444333 4567789998887733322 22 111110 0 11112232332222223368999
Q ss_pred HHHHHHHHHhhhCCCCEEEEe
Q 004946 538 ELVDMVATVASIDDRPVCFRY 558 (722)
Q Consensus 538 E~~~~l~~a~~~~~~Pv~ir~ 558 (722)
|+..+++.|++ .++|++|-.
T Consensus 164 eL~~ai~~Al~-~~GpslIeV 183 (287)
T TIGR02177 164 HLKEIIKEAIN-HKGYALVDI 183 (287)
T ss_pred HHHHHHHHHHh-CCCCEEEEE
Confidence 99999999987 688998854
No 212
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.83 E-value=2.1 Score=50.23 Aligned_cols=116 Identities=14% Similarity=0.058 Sum_probs=81.1
Q ss_pred ceeecccchHHHHHHHHHHhcC-CCeeEEE-ecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCccCCCCCCcCcHHHHHH
Q 004946 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITF 521 (722)
Q Consensus 444 R~~d~GIaE~~av~~AaGlA~~-G~~p~~~-t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~d~a~ 521 (722)
+++.+ -.|++++.+|.|.|.. |...+|. ++.+.+..++.-+ ..+...+.||+++..........-..+|......+
T Consensus 43 ~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~gl-a~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~ 120 (563)
T PRK08527 43 KHILT-RHEQAAVHAADGYARASGKVGVAIVTSGPGFTNAVTGL-ATAYMDSIPLVLISGQVPNSLIGTDAFQEIDAVGI 120 (563)
T ss_pred eEEEe-ccHHHHHHHHHHHHhhhCCCEEEEECCCCcHHHHHHHH-HHHhhcCCCEEEEecCCCccccCCCCCcccchhhh
Confidence 77777 8999999999999986 5444443 5888887777544 56677899999886433321111123666655567
Q ss_pred hcCCCCcEEEeeCCHHHHHHHHHHHhhh----CCCCEEEEecCCC
Q 004946 522 MSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (722)
Q Consensus 522 ~~~iP~l~V~~Psd~~E~~~~l~~a~~~----~~~Pv~ir~~r~~ 562 (722)
++.+-.+ .+...++.++..+++.|+.. ..+||+|-+|...
T Consensus 121 ~~~~tk~-s~~v~~~~~i~~~l~~A~~~a~s~~~GPV~l~iP~Dv 164 (563)
T PRK08527 121 SRPCVKH-NYLVKSIEELPRILKEAFYIARSGRPGPVHIDIPKDV 164 (563)
T ss_pred hhcccce-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhH
Confidence 7765444 35568899999999988864 2369999998753
No 213
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=92.80 E-value=0.83 Score=53.93 Aligned_cols=117 Identities=18% Similarity=0.174 Sum_probs=80.5
Q ss_pred CceeecccchHHHHHHHHHHhcC-CCeeEEE-ecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCccCCCCCCcCcHHHHH
Q 004946 443 ERYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDIT 520 (722)
Q Consensus 443 ~R~~d~GIaE~~av~~AaGlA~~-G~~p~~~-t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~d~a 520 (722)
=|++.+ -.|++++.+|.|.|.. |...+|. ++.+.+..++.-+ ..+-..+.||+++..........-..+|......
T Consensus 44 i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~~~gi-~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~ 121 (588)
T PRK07525 44 IRFIDV-AHEQNAGHMADGYTRVTGRMGMVIGQNGPGITNFVTAV-ATAYWAHTPVVLVTPQAGTKTIGQGGFQEAEQMP 121 (588)
T ss_pred CCEEEe-cCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHHHHHH-HHHhhcCCCEEEEeCCCCcccCCCCCCcccchhh
Confidence 367776 8999999999999986 6454544 4788877777544 5666789999998733332111122467666667
Q ss_pred HhcCCCCcEEEeeCCHHHHHHHHHHHhhh---CCCCEEEEecCCC
Q 004946 521 FMSCLPNMIVMAPSDEDELVDMVATVASI---DDRPVCFRYPRGA 562 (722)
Q Consensus 521 ~~~~iP~l~V~~Psd~~E~~~~l~~a~~~---~~~Pv~ir~~r~~ 562 (722)
+++.+-.+ .+...++.++...+..|+.. ..+||+|-+|+..
T Consensus 122 l~~~~tk~-~~~i~~~~~~~~~i~rA~~~A~~~~GPV~i~iP~Dv 165 (588)
T PRK07525 122 MFEDMTKY-QEEVRDPSRMAEVLNRVFDKAKRESGPAQINIPRDY 165 (588)
T ss_pred hhhhheeE-EEECCCHHHHHHHHHHHHHHHhcCCCCEEEEcChhH
Confidence 77765443 45667888888877777742 4579999999764
No 214
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.76 E-value=2.4 Score=50.15 Aligned_cols=146 Identities=14% Similarity=0.102 Sum_probs=92.8
Q ss_pred HHHHHHHHhcCC--CEEEEecCCCCccch---HHHHHhCCCceeecccchHHHHHHHHHHhcC-CCeeEEE-ecHhhHHH
Q 004946 408 IEALVMEAEKDK--DIVVVHAGMEMDLSL---QLFQEKFPERYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQR 480 (722)
Q Consensus 408 ~~~L~~~~~~d~--~iv~i~ad~~~~~~l---~~f~~~~p~R~~d~GIaE~~av~~AaGlA~~-G~~p~~~-t~~~Fl~r 480 (722)
++.|.+.+++.. .++. +.|+.-+ +.+.+.-.=|++.+ -.|++++.+|.|.|.. |...+|. ++.+.+..
T Consensus 14 a~~l~~~L~~~GV~~vFG----vpG~~~~~l~dal~~~~~i~~I~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N 88 (595)
T PRK09107 14 AEMVVQALKDQGVEHIFG----YPGGAVLPIYDEIFQQDDIQHILV-RHEQGAGHAAEGYARSTGKPGVVLVTSGPGATN 88 (595)
T ss_pred HHHHHHHHHHCCCCEEEE----ccCcchHHHHHHHhhcCCCeEEEE-CChHHHHHHHHHHHHHhCCCEEEEECCCccHhH
Confidence 555666555542 3333 3333322 33322212378887 9999999999999975 6545544 48888877
Q ss_pred HHHHHHHHHhcCCCCEEEEEeCCCc--cCCCCCCcCcHHHHHHhcCCCCcEEEeeCCHHHHHHHHHHHhhh----CCCCE
Q 004946 481 AYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPV 554 (722)
Q Consensus 481 a~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~----~~~Pv 554 (722)
++--+ ..+-..+.||+++...... .|. .++|......+++.+-.+ .+...++.++..++..|+.. ..+||
T Consensus 89 ~l~gi-a~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~l~~~vtk~-~~~v~~~~~i~~~l~~A~~~A~s~~~GPV 164 (595)
T PRK09107 89 AVTPL-QDALMDSIPLVCITGQVPTHLIGS--DAFQECDTVGITRPCTKH-NWLVKDVNDLARVIHEAFHVATSGRPGPV 164 (595)
T ss_pred HHHHH-HHHhhcCCCEEEEEcCCChhhcCC--CCCcccchhhhhhhheEE-EEEeCCHHHHHHHHHHHHHHhcCCCCceE
Confidence 77544 5666789999988643332 232 246665555666654333 34567888888888888763 35799
Q ss_pred EEEecCCC
Q 004946 555 CFRYPRGA 562 (722)
Q Consensus 555 ~ir~~r~~ 562 (722)
+|-+|+..
T Consensus 165 ~l~iP~Dv 172 (595)
T PRK09107 165 VVDIPKDV 172 (595)
T ss_pred EEecCCCh
Confidence 99999764
No 215
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=92.59 E-value=2.4 Score=49.88 Aligned_cols=114 Identities=17% Similarity=0.151 Sum_probs=78.9
Q ss_pred ceeecccchHHHHHHHHHHhcC-CCeeEEE-ecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCc--cCCCCCCcCcHHHH
Q 004946 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDI 519 (722)
Q Consensus 444 R~~d~GIaE~~av~~AaGlA~~-G~~p~~~-t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~d~ 519 (722)
|++.+ ..|++++.+|.|.|.. |.-.+|. ++.+.+..++.-+ ..+-..+.||+++...... .+.+ .+|.....
T Consensus 45 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~l~gi-~~A~~~~~Pvl~i~G~~~~~~~~~~--~~q~~d~~ 120 (572)
T PRK06456 45 RHVLM-RHEQAAAHAADGYARASGVPGVCTATSGPGTTNLVTGL-ITAYWDSSPVIAITGQVPRSVMGKM--AFQEADAM 120 (572)
T ss_pred eEEEe-CcHHHHHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHH-HHHHhhCCCEEEEecCCCccccCCC--Cccccchh
Confidence 67766 8999999999999987 5444443 5888887777544 5767789999988743332 2322 24555445
Q ss_pred HHhcCCCCcEEEeeCCHHHHHHHHHHHhhh----CCCCEEEEecCCC
Q 004946 520 TFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (722)
Q Consensus 520 a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~----~~~Pv~ir~~r~~ 562 (722)
.+++.+-.+. +...++.++..++..|+.. ..+||+|-+|...
T Consensus 121 ~i~~~~tk~~-~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 166 (572)
T PRK06456 121 GVFENVTKYV-IGIKRIDEIPQWIKNAFYIATTGRPGPVVIDIPRDI 166 (572)
T ss_pred hhhhccceeE-EEeCCHHHHHHHHHHHHHHHhcCCCCcEEEecChhH
Confidence 6777665553 4446788888888887752 3589999998754
No 216
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=92.58 E-value=1.7 Score=43.17 Aligned_cols=143 Identities=20% Similarity=0.290 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCCCCccchHHHH-HhCCCceeecccchHHHHHHHHHHhcCCCeeEEEec--HhhHHHH
Q 004946 405 DCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQ-EKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIP--SAFLQRA 481 (722)
Q Consensus 405 ~a~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f~-~~~p~R~~d~GIaE~~av~~AaGlA~~G~~p~~~t~--~~Fl~ra 481 (722)
+++.++|.+.+. ..+++. |.+... ...+. ...|.+++..|-- ...+..|.|++++--+|++++. ..|+.-.
T Consensus 2 ~~~~~~l~~~l~--d~iiv~--d~G~~~-~~~~~~~~~~~~~~~~gsm-G~~lpaAiGa~la~~~~Vv~i~GDG~f~m~~ 75 (181)
T TIGR03846 2 IDAIRAIASYLE--DELVVS--NIGVPS-KELYAIRDRPLNFYMLGSM-GLASSIGLGLALATDRTVIVIDGDGSLLMNL 75 (181)
T ss_pred HHHHHHHHHhCC--CCEEEe--cCCHhH-HHHHhhhcCCCCeeecccc-ccHHHHHHHHHHcCCCcEEEEEcchHHHhhh
Confidence 455666766663 344433 444322 12222 2357788864421 1234567777765456677764 5555333
Q ss_pred HHHHHHHHhcCC-CCEEEEE-eCCCccCCCC--CCcC-cHHHH-HHhcCCCCcEEEe-eCCHHHHHHHHHHHhhhCCCCE
Q 004946 482 YDQVVNDVDQQR-LPVRFVI-TSAGLVGSDG--PTQC-GAFDI-TFMSCLPNMIVMA-PSDEDELVDMVATVASIDDRPV 554 (722)
Q Consensus 482 ~dqi~~~~a~~~-lpVv~v~-~~~G~~G~dG--~TH~-~~~d~-a~~~~iP~l~V~~-Psd~~E~~~~l~~a~~~~~~Pv 554 (722)
|-+..++..+ +|+++++ +..|+ |.-+ ++.. ..-|. .+.+.+ |+.-.. ..+++|+...++ +++ .++|+
T Consensus 76 --~el~ta~~~~~~pv~~vV~NN~~y-g~~~~q~~~~~~~~d~~~lA~a~-G~~~~~~v~~~~~l~~al~-a~~-~~~p~ 149 (181)
T TIGR03846 76 --GVLPTIAAESPKNLILVILDNGAY-GSTGNQPTPASRRTDLELVAKAA-GIRNVEKVADEEELRDALK-ALA-MKGPT 149 (181)
T ss_pred --hHHHHHHHhCCCCeEEEEEeCCcc-ccccCcCCCCCCCCCHHHHHHHC-CCCeEEEeCCHHHHHHHHH-HHc-CCCCE
Confidence 3345566677 5987777 44443 3222 1111 11122 223332 454455 789999999997 765 67899
Q ss_pred EEEec
Q 004946 555 CFRYP 559 (722)
Q Consensus 555 ~ir~~ 559 (722)
+|-..
T Consensus 150 li~v~ 154 (181)
T TIGR03846 150 FIHVK 154 (181)
T ss_pred EEEEE
Confidence 98553
No 217
>PRK08322 acetolactate synthase; Reviewed
Probab=92.57 E-value=2.5 Score=49.38 Aligned_cols=115 Identities=11% Similarity=0.005 Sum_probs=80.1
Q ss_pred CceeecccchHHHHHHHHHHhcCCCeeEE-E-ecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCc--cCCCCCCcCcHHH
Q 004946 443 ERYFDVGMAEQHAVTFSAGLACGGLKPFC-I-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFD 518 (722)
Q Consensus 443 ~R~~d~GIaE~~av~~AaGlA~~G~~p~~-~-t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~d 518 (722)
=|++.+ ..|++++.+|.|.|..--+|-+ . ++.+.+..++.-+ ..+...+.||+++...... .+. ..||....
T Consensus 39 i~~i~~-~hE~~A~~~A~gyar~tg~~gv~~~t~GpG~~N~~~~i-~~A~~~~~Pll~i~g~~~~~~~~~--~~~q~~d~ 114 (547)
T PRK08322 39 IKLILT-RHEQGAAFMAATYGRLTGKAGVCLSTLGPGATNLVTGV-AYAQLGGMPMVAITGQKPIKRSKQ--GSFQIVDV 114 (547)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHhhCCCEEEEECCCccHhHHHHHH-HHHhhcCCCEEEEeccccccccCC--CccccccH
Confidence 377777 9999999999999997444433 3 4778887777544 6777889999988633222 222 13555455
Q ss_pred HHHhcCCCCcEEEeeCCHHHHHHHHHHHhhh----CCCCEEEEecCCC
Q 004946 519 ITFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (722)
Q Consensus 519 ~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~----~~~Pv~ir~~r~~ 562 (722)
..+++.+-.+ .+...++.++..++..|+.. ..+||+|-+|...
T Consensus 115 ~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv 161 (547)
T PRK08322 115 VAMMAPLTKW-TRQIVSPDNIPEVVREAFRLAEEERPGAVHLELPEDI 161 (547)
T ss_pred HHHhhhheeE-EEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChhh
Confidence 5677765543 46677888888888888763 3579999998764
No 218
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=92.55 E-value=1.2 Score=43.80 Aligned_cols=114 Identities=19% Similarity=0.249 Sum_probs=65.6
Q ss_pred hCCCcee-ecccch-HHHHHHHHHHhcCCCeeEEEec--HhhHHHHHHHHHHHHhcCCCCEEEEE-eCCCccCCC--CCC
Q 004946 440 KFPERYF-DVGMAE-QHAVTFSAGLACGGLKPFCIIP--SAFLQRAYDQVVNDVDQQRLPVRFVI-TSAGLVGSD--GPT 512 (722)
Q Consensus 440 ~~p~R~~-d~GIaE-~~av~~AaGlA~~G~~p~~~t~--~~Fl~ra~dqi~~~~a~~~lpVv~v~-~~~G~~G~d--G~T 512 (722)
..|.+++ +.|..- -..++.|.|++++--+|++++. ..|+.-.- . +..+...++|+++++ ++.++ |.- ...
T Consensus 39 ~~~~~~~~~~g~g~mG~~l~~aiGa~la~~~~Vv~i~GDGsf~m~~~-e-L~ta~~~~l~v~ivVlNN~~~-g~~~~~~~ 115 (175)
T cd02009 39 DKTVRVFANRGASGIDGTLSTALGIALATDKPTVLLTGDLSFLHDLN-G-LLLGKQEPLNLTIVVINNNGG-GIFSLLPQ 115 (175)
T ss_pred CCCceEEecCCccchhhHHHHHHHHHhcCCCCEEEEEehHHHHHhHH-H-HHhccccCCCeEEEEEECCCC-chheeccC
Confidence 4467887 545332 2255677776665456777764 55654432 2 345567789987766 44442 210 000
Q ss_pred cC--c----------HHHH-HHhcCCCCcEEEeeCCHHHHHHHHHHHhhhCCCCEEEEe
Q 004946 513 QC--G----------AFDI-TFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRY 558 (722)
Q Consensus 513 H~--~----------~~d~-a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~~~~Pv~ir~ 558 (722)
++ . .-|. .+.+.+ |+..+...+++|+...++++++ .++|++|-.
T Consensus 116 ~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~-~~~p~lIev 172 (175)
T cd02009 116 ASFEDEFERLFGTPQGLDFEHLAKAY-GLEYRRVSSLDELEQALESALA-QDGPHVIEV 172 (175)
T ss_pred CcccchhhhhhcCCCCCCHHHHHHHc-CCCeeeCCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 00 0 0111 222222 5566777899999999999986 688998743
No 219
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=92.47 E-value=2.4 Score=49.66 Aligned_cols=115 Identities=11% Similarity=0.043 Sum_probs=80.0
Q ss_pred CceeecccchHHHHHHHHHHhcCCCeeEEE--ecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCc--cCCCCCCcCcHHH
Q 004946 443 ERYFDVGMAEQHAVTFSAGLACGGLKPFCI--IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFD 518 (722)
Q Consensus 443 ~R~~d~GIaE~~av~~AaGlA~~G~~p~~~--t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~d 518 (722)
=|++.+ ..|++++.+|.|.|....+|-++ ++.+.+..++--+ ..+-..+.||+++...... .+. ..+|....
T Consensus 47 i~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~~~gi-~~A~~~~~Pvl~i~g~~~~~~~~~--~~~q~~d~ 122 (557)
T PRK08199 47 IRVIVC-RQEGGAAMMAEAYGKLTGRPGICFVTRGPGATNASIGV-HTAFQDSTPMILFVGQVARDFRER--EAFQEIDY 122 (557)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHH-HHHhhcCCCEEEEecCCccccCCC--CcccccCH
Confidence 367777 89999999999999985544443 4788887777544 5667789999988643322 222 23566656
Q ss_pred HHHhcCCCCcEEEeeCCHHHHHHHHHHHhhh----CCCCEEEEecCCC
Q 004946 519 ITFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (722)
Q Consensus 519 ~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~----~~~Pv~ir~~r~~ 562 (722)
..+++.+-.+. +...++.++..++..|+.. ..+||+|.+|...
T Consensus 123 ~~l~~~~tk~~-~~v~~~~~~~~~~~~A~~~A~~~~~GPV~l~iP~dl 169 (557)
T PRK08199 123 RRMFGPMAKWV-AEIDDAARIPELVSRAFHVATSGRPGPVVLALPEDV 169 (557)
T ss_pred HHhhhhhhcee-eecCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhH
Confidence 67777665553 4446888888888877753 3579999999764
No 220
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.41 E-value=3 Score=49.28 Aligned_cols=115 Identities=17% Similarity=0.161 Sum_probs=79.3
Q ss_pred CceeecccchHHHHHHHHHHhcC-CCeeEEE-ecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCc--cCCCCCCcCcHHH
Q 004946 443 ERYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFD 518 (722)
Q Consensus 443 ~R~~d~GIaE~~av~~AaGlA~~-G~~p~~~-t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~d 518 (722)
=|++.+ -.|++++.+|-|.|.. |...+|. ++.+.+..++.-+ ..+...+.||+++...... .+.+ .+|....
T Consensus 60 i~~i~~-rhE~~A~~~AdgYar~tg~~gv~~~t~GpG~~N~l~gl-~~A~~~~~Pvl~i~G~~~~~~~~~~--~~q~~d~ 135 (587)
T PRK06965 60 IQHVLV-RHEQAAVHAADGYARATGKVGVALVTSGPGVTNAVTGI-ATAYMDSIPMVVISGQVPTAAIGQD--AFQECDT 135 (587)
T ss_pred CeEEEe-CCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHH-HHHhhcCCCEEEEecCCCccccCCC--CcccccH
Confidence 378877 8999999999999987 5444433 4888887777544 6777789999998743332 1322 3555544
Q ss_pred HHHhcCCCCcEEEeeCCHHHHHHHHHHHhhh----CCCCEEEEecCCC
Q 004946 519 ITFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (722)
Q Consensus 519 ~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~----~~~Pv~ir~~r~~ 562 (722)
..+++.+-.+ .+...++.++..++..|+.. ..+||+|-+|...
T Consensus 136 ~~l~~~itk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv 182 (587)
T PRK06965 136 VGITRPIVKH-NFLVKDVRDLAETVKKAFYIARTGRPGPVVVDIPKDV 182 (587)
T ss_pred HHHhcCCcce-eEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEeChhh
Confidence 5666766554 35556777777777777653 3579999999864
No 221
>PRK07524 hypothetical protein; Provisional
Probab=92.27 E-value=2.9 Score=48.66 Aligned_cols=116 Identities=16% Similarity=0.215 Sum_probs=80.3
Q ss_pred ceeecccchHHHHHHHHHHhcCCCee-EEE-ecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCc--cCCC-CCCcCcHHH
Q 004946 444 RYFDVGMAEQHAVTFSAGLACGGLKP-FCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSD-GPTQCGAFD 518 (722)
Q Consensus 444 R~~d~GIaE~~av~~AaGlA~~G~~p-~~~-t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~d-G~TH~~~~d 518 (722)
|++.+ -.|++++.+|-|.|..--+| +|. +..+.+..+.--+ ..+...+.||+++...... .+.+ +..|+....
T Consensus 41 ~~i~~-~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~~~gi-~~A~~~~~Pvl~i~G~~~~~~~~~~~~~~~~~~d~ 118 (535)
T PRK07524 41 RHVTP-RHEQGAGFMADGYARVSGKPGVCFIITGPGMTNIATAM-GQAYADSIPMLVISSVNRRASLGKGRGKLHELPDQ 118 (535)
T ss_pred cEEEe-ccHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHH-HHHHhcCCCEEEEeCCCChhhcCCCCccccccccH
Confidence 77777 89999999999999874443 443 5788887777544 6777789999988643322 2322 344543345
Q ss_pred HHHhcCCCCcEEEeeCCHHHHHHHHHHHhhh----CCCCEEEEecCCC
Q 004946 519 ITFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (722)
Q Consensus 519 ~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~----~~~Pv~ir~~r~~ 562 (722)
..+++.+-.+ .+...++.++...+..|+.. ..+||+|-+|+..
T Consensus 119 ~~l~~~~tk~-~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 165 (535)
T PRK07524 119 RAMVAGVAAF-SHTLMSAEDLPEVLARAFAVFDSARPRPVHIEIPLDV 165 (535)
T ss_pred HHHhhhhcee-EEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEEeCHhH
Confidence 5677765443 46677888888888887753 3579999999764
No 222
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=92.26 E-value=2.4 Score=49.90 Aligned_cols=116 Identities=16% Similarity=0.097 Sum_probs=79.4
Q ss_pred CCceeecccchHHHHHHHHHHhcCCCe-eEEE-ecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCc--cCCCCCCcCcHH
Q 004946 442 PERYFDVGMAEQHAVTFSAGLACGGLK-PFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAF 517 (722)
Q Consensus 442 p~R~~d~GIaE~~av~~AaGlA~~G~~-p~~~-t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~ 517 (722)
+=+++.+ ..|++++.+|.|.|....+ .+|. ++.+.+..++--+ ..+-..+.||+++...... .+.+ .+|...
T Consensus 53 ~i~~i~~-~hE~~A~~~A~gyar~tg~~gv~~~t~GPG~~N~~~gl-~~A~~~~~Pvl~ItG~~~~~~~~~~--~~q~~d 128 (571)
T PRK07710 53 GIPHILT-RHEQGAIHAAEGYARISGKPGVVIATSGPGATNVVTGL-ADAMIDSLPLVVFTGQVATSVIGSD--AFQEAD 128 (571)
T ss_pred CCcEEEe-CCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHH-HHHhhcCCCEEEEeccCCccccCCC--Cccccc
Confidence 4588866 9999999999999987444 3333 4788877777544 5666789999988643322 2322 245555
Q ss_pred HHHHhcCCCCcEEEeeCCHHHHHHHHHHHhhhC----CCCEEEEecCCC
Q 004946 518 DITFMSCLPNMIVMAPSDEDELVDMVATVASID----DRPVCFRYPRGA 562 (722)
Q Consensus 518 d~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~~----~~Pv~ir~~r~~ 562 (722)
...+++.+-.+ .+...++.++..+++.|+... .+||+|-+|...
T Consensus 129 ~~~l~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv 176 (571)
T PRK07710 129 IMGITMPVTKH-NYQVRKASDLPRIIKEAFHIATTGRPGPVLIDIPKDM 176 (571)
T ss_pred hhhhhhcccce-EEecCCHHHHHHHHHHHHHHHhcCCCCcEEEEcChhH
Confidence 55677766555 345567778888888777632 589999998753
No 223
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=92.14 E-value=4.1 Score=43.37 Aligned_cols=145 Identities=14% Similarity=0.137 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCCCCccchHHHHHhC-CCceeecccchHHHHHHHHHHhcC-CCeeEEEec--HhhHHH
Q 004946 405 DCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKF-PERYFDVGMAEQHAVTFSAGLACG-GLKPFCIIP--SAFLQR 480 (722)
Q Consensus 405 ~a~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f~~~~-p~R~~d~GIaE~~av~~AaGlA~~-G~~p~~~t~--~~Fl~r 480 (722)
+.+.++|.+..-..++++++ .|+|-+. .+..-+ ++++. +.. ..++.+|.|++++ --++++++. .+|+.-
T Consensus 29 ~~v~~al~e~~~~~~d~ivv-sdiGc~~---~~~~~~~~~~~~-~~~--G~alPaAiGaklA~Pdr~VV~i~GDG~f~~~ 101 (277)
T PRK09628 29 KSIIRAIDKLGWNMDDVCVV-SGIGCSG---RFSSYVNCNTVH-TTH--GRAVAYATGIKLANPDKHVIVVSGDGDGLAI 101 (277)
T ss_pred HHHHHHHHHhcCCCCCEEEE-eCcCHHH---HhhccCCCCcee-ecc--ccHHHHHHHHHHHCCCCeEEEEECchHHHHh
Confidence 34556665554233455444 4665432 111122 23333 222 2577788888776 345566653 556542
Q ss_pred HHHHHHHHHhcCCCCEEEEEeCCCccCCCCCCc--------------C----cHHHHHHhcCCCCcEE---EeeCCHHHH
Q 004946 481 AYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQ--------------C----GAFDITFMSCLPNMIV---MAPSDEDEL 539 (722)
Q Consensus 481 a~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH--------------~----~~~d~a~~~~iP~l~V---~~Psd~~E~ 539 (722)
. .+-+-.++..++||++++-+.+..|.-+.+. . ..+|+.-++.--|..- ....++.|+
T Consensus 102 g-~~el~ta~r~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g~~~~~~~~g~~~~~~D~~~lA~a~G~~~va~~~v~~~~el 180 (277)
T PRK09628 102 G-GNHTIHGCRRNIDLNFILINNFIYGLTNSQTSPTTPKGMWTVTAQYGNIDPTFDACKLATAAGASFVARESVIDPQKL 180 (277)
T ss_pred h-HHHHHHHHHhCcCeEEEEEEChHHhcceecccCCCCCCceeeeccCCCcCCCCCHHHHHHHCCCceEEEEccCCHHHH
Confidence 2 2333457888999888774443323211000 0 1122222222124432 578999999
Q ss_pred HHHHHHHhhhCCCCEEEEe
Q 004946 540 VDMVATVASIDDRPVCFRY 558 (722)
Q Consensus 540 ~~~l~~a~~~~~~Pv~ir~ 558 (722)
..+++.|++ .++|++|-.
T Consensus 181 ~~al~~Al~-~~Gp~lIeV 198 (277)
T PRK09628 181 EKLLVKGFS-HKGFSFFDV 198 (277)
T ss_pred HHHHHHHHh-CCCCEEEEE
Confidence 999999987 688998855
No 224
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=92.11 E-value=2.9 Score=49.68 Aligned_cols=117 Identities=19% Similarity=0.150 Sum_probs=80.5
Q ss_pred CceeecccchHHHHHHHHHHhcC-CCeeEE-EecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCccCCCCCCcCcHHHHH
Q 004946 443 ERYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDIT 520 (722)
Q Consensus 443 ~R~~d~GIaE~~av~~AaGlA~~-G~~p~~-~t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~d~a 520 (722)
=+++.+ -.|++++.+|.|.|.. |...+| .++.+.+..++--+ ..+...+.||+++.............+|......
T Consensus 70 i~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~l~gl-~~A~~~~~PllvI~G~~~~~~~~~~~~q~~d~~~ 147 (612)
T PRK07789 70 VRHVLV-RHEQGAGHAAEGYAQATGRVGVCMATSGPGATNLVTPI-ADANMDSVPVVAITGQVGRGLIGTDAFQEADIVG 147 (612)
T ss_pred ceEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHH-HHHhhcCCCEEEEecCCCccccCCCcCcccchhh
Confidence 367776 8999999999999987 644444 34788887777543 6777889999988743332111112355555556
Q ss_pred HhcCCCCcEEEeeCCHHHHHHHHHHHhhh----CCCCEEEEecCCC
Q 004946 521 FMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (722)
Q Consensus 521 ~~~~iP~l~V~~Psd~~E~~~~l~~a~~~----~~~Pv~ir~~r~~ 562 (722)
+++.+-.+ .+...++.++..++..|+.. ..+||+|.+|...
T Consensus 148 l~~~~tk~-s~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~Dv 192 (612)
T PRK07789 148 ITMPITKH-NFLVTDADDIPRVIAEAFHIASTGRPGPVLVDIPKDA 192 (612)
T ss_pred hhhcceeE-EEEcCCHHHHHHHHHHHHHHHhcCCCceEEEEEccch
Confidence 66665543 34567889988888888863 2579999998764
No 225
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.11 E-value=2.9 Score=49.11 Aligned_cols=116 Identities=12% Similarity=0.071 Sum_probs=79.4
Q ss_pred ceeecccchHHHHHHHHHHhcC-CCeeEEE-ecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCccCCCCCCcCcHHHHHH
Q 004946 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITF 521 (722)
Q Consensus 444 R~~d~GIaE~~av~~AaGlA~~-G~~p~~~-t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~d~a~ 521 (722)
|++.+ -.|++++.+|.|.|.. |...+|. ++.+.+..++--+ ..+-..+.||+++..........-..+|......+
T Consensus 44 ~~v~~-~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~l~~i-~~A~~~~~Pvlvi~G~~~~~~~~~~~~q~~d~~~l 121 (574)
T PRK06882 44 EHVLV-RHEQAAVHMADGYARSTGKVGCVLVTSGPGATNAITGI-ATAYTDSVPLVILSGQVPSNLIGTDAFQECDMLGI 121 (574)
T ss_pred eEEEe-ccHHHHHHHHHHHHHhhCCCeEEEECCCccHHHHHHHH-HHHhhcCCCEEEEecCCCccccCCCcccccchhhh
Confidence 77777 8999999999999987 5333333 4788887777544 56677899999886433321111124665555566
Q ss_pred hcCCCCcEEEeeCCHHHHHHHHHHHhhh----CCCCEEEEecCCC
Q 004946 522 MSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (722)
Q Consensus 522 ~~~iP~l~V~~Psd~~E~~~~l~~a~~~----~~~Pv~ir~~r~~ 562 (722)
++.+-.+ .....++.++..++..|+.. ..+||+|-+|...
T Consensus 122 ~~~vtk~-s~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 165 (574)
T PRK06882 122 SRPVVKH-SFIVKNAEDIPSTIKKAFYIASTGRPGPVVIDIPKDM 165 (574)
T ss_pred hhcccce-EEEeCCHHHHHHHHHHHHHHHhcCCCCCEEEecCHHH
Confidence 6665443 35567888888888888763 3589999998763
No 226
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=92.07 E-value=0.99 Score=52.78 Aligned_cols=117 Identities=9% Similarity=-0.057 Sum_probs=79.8
Q ss_pred CceeecccchHHHHHHHHHHhcCCCeeEEE--ecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCccCCCCCCcCcHHHHH
Q 004946 443 ERYFDVGMAEQHAVTFSAGLACGGLKPFCI--IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDIT 520 (722)
Q Consensus 443 ~R~~d~GIaE~~av~~AaGlA~~G~~p~~~--t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~d~a 520 (722)
=|++.+ -.|++++.+|.|.|..-.+|-++ ++.+.+..++.-+ ..+-..+.||+++..........-.++|......
T Consensus 40 i~~v~~-~hE~~A~~mAdgyar~tgkpgv~~~t~GPG~~N~l~~l-~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~ 117 (549)
T PRK06457 40 VKYVQV-RHEEGAALAASVEAKITGKPSACMGTSGPGSIHLLNGL-YDAKMDHAPVIALTGQVESDMIGHDYFQEVNLTK 117 (549)
T ss_pred CeEEEe-CcHHHHHHHHHHHHHHhCCCeEEEeCCCCchhhhHHHH-HHHHhcCCCEEEEecCCCccccCCCcccccchhh
Confidence 466665 89999999999999985555444 4788877777544 5667789999988633222111122456666667
Q ss_pred HhcCCCCcEEEeeCCHHHHHHHHHHHhhh---CCCCEEEEecCCC
Q 004946 521 FMSCLPNMIVMAPSDEDELVDMVATVASI---DDRPVCFRYPRGA 562 (722)
Q Consensus 521 ~~~~iP~l~V~~Psd~~E~~~~l~~a~~~---~~~Pv~ir~~r~~ 562 (722)
+++.+-.+ .+...+++++..++..|+.. ..+||+|.+|...
T Consensus 118 l~~~vtk~-~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~Dv 161 (549)
T PRK06457 118 LFDDVAVF-NQILINPENAEYIIRRAIREAISKRGVAHINLPVDI 161 (549)
T ss_pred hhccceeE-EEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeCHhH
Confidence 77766544 35567777877777777653 3589999999764
No 227
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=92.02 E-value=2.9 Score=49.34 Aligned_cols=116 Identities=12% Similarity=0.076 Sum_probs=79.3
Q ss_pred ceeecccchHHHHHHHHHHhcC-CCeeEEE-ecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCccCCCCCCcCcHHHHHH
Q 004946 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITF 521 (722)
Q Consensus 444 R~~d~GIaE~~av~~AaGlA~~-G~~p~~~-t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~d~a~ 521 (722)
|++.+ -.|++++.+|.|.|.. |.-.++. ++.+.+..++-- +..+-..+.||+++.............+|......+
T Consensus 40 ~~i~~-~hE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~l~~-i~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l 117 (586)
T PRK06276 40 IHILT-RHEQAAAHAADGYARASGKVGVCVATSGPGATNLVTG-IATAYADSSPVIALTGQVPTKLIGNDAFQEIDALGI 117 (586)
T ss_pred cEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHH-HHHHHhcCCCEEEEeCCCCccccCCCCCccccHhhH
Confidence 77777 7999999999999987 5333333 478888777754 467778899999886433321111234666555567
Q ss_pred hcCCCCcEEEeeCCHHHHHHHHHHHhhh----CCCCEEEEecCCC
Q 004946 522 MSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (722)
Q Consensus 522 ~~~iP~l~V~~Psd~~E~~~~l~~a~~~----~~~Pv~ir~~r~~ 562 (722)
++.+-.+. +.-.+++++...+..|+.. ..+||+|.+|...
T Consensus 118 ~~~~tk~s-~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~Dv 161 (586)
T PRK06276 118 FMPITKHN-FQIKKPEEIPEIFRAAFEIAKTGRPGPVHIDLPKDV 161 (586)
T ss_pred HhhhcceE-EecCCHHHHHHHHHHHHHHhcCCCCCcEEEEcChhH
Confidence 77655443 3446778888888887764 3579999999764
No 228
>PRK08617 acetolactate synthase; Reviewed
Probab=91.70 E-value=1.1 Score=52.32 Aligned_cols=115 Identities=11% Similarity=0.050 Sum_probs=81.3
Q ss_pred CceeecccchHHHHHHHHHHhcCCCe-eEEE-ecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCc--cCCCCCCcCcHHH
Q 004946 443 ERYFDVGMAEQHAVTFSAGLACGGLK-PFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFD 518 (722)
Q Consensus 443 ~R~~d~GIaE~~av~~AaGlA~~G~~-p~~~-t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~d 518 (722)
=|++.+ ..|++++.+|.|.|...-+ .+|. |+.+.+..++.-+ ..+...+.||+++...... .+. ..||....
T Consensus 43 i~~i~~-~hE~~A~~~A~gyar~tg~~gv~~vt~GpG~~N~l~gl-~~A~~~~~PvlvisG~~~~~~~~~--~~~q~~d~ 118 (552)
T PRK08617 43 PELIVT-RHEQNAAFMAAAIGRLTGKPGVVLVTSGPGVSNLATGL-VTATAEGDPVVAIGGQVKRADRLK--RTHQSMDN 118 (552)
T ss_pred CCEEEe-ccHHHHHHHHHhHhhhcCCCEEEEECCCCcHhHhHHHH-HHHhhcCCCEEEEecCCcccccCC--CCccccch
Confidence 477777 8999999999999998444 3333 4788887777544 5667789999988643222 232 24777666
Q ss_pred HHHhcCCCCcEEEeeCCHHHHHHHHHHHhhh----CCCCEEEEecCCC
Q 004946 519 ITFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (722)
Q Consensus 519 ~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~----~~~Pv~ir~~r~~ 562 (722)
..+++.+-.+ .+...++.++..++..|+.. ..+||+|-+|...
T Consensus 119 ~~l~~~~tk~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv 165 (552)
T PRK08617 119 VALFRPITKY-SAEVQDPDNLSEVLANAFRAAESGRPGAAFVSLPQDV 165 (552)
T ss_pred hhhhhhhcce-EEEeCCHHHHHHHHHHHHHHHccCCCCcEEEeChhhh
Confidence 6777776554 45557788888888877763 2469999998764
No 229
>PRK11269 glyoxylate carboligase; Provisional
Probab=91.69 E-value=3.4 Score=48.87 Aligned_cols=116 Identities=8% Similarity=-0.004 Sum_probs=79.6
Q ss_pred ceeecccchHHHHHHHHHHhcCC-CeeE-E-EecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCccCCCCCCcCcHHHHH
Q 004946 444 RYFDVGMAEQHAVTFSAGLACGG-LKPF-C-IIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDIT 520 (722)
Q Consensus 444 R~~d~GIaE~~av~~AaGlA~~G-~~p~-~-~t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~d~a 520 (722)
|++.+ ..|++++.+|.|.|... .+|- | .|+.+.+..++--+ ..+...+.||+++..........-..+|......
T Consensus 44 ~~v~~-rhE~~A~~mAdGYar~t~g~~gv~~~t~GPG~~N~l~gl-~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~ 121 (591)
T PRK11269 44 RHILA-RHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTDMITGL-YSASADSIPILCITGQAPRARLHKEDFQAVDIES 121 (591)
T ss_pred cEEee-CCHHHHHHHHHHHHHHcCCCcEEEEECCCCcHHHHHHHH-HHHhhcCCCEEEEecCCCccccCCCcccccChhh
Confidence 78888 89999999999999865 4443 3 35888777666443 5667789999988643332111112366655567
Q ss_pred HhcCCCCcEEEeeCCHHHHHHHHHHHhhh----CCCCEEEEecCCC
Q 004946 521 FMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (722)
Q Consensus 521 ~~~~iP~l~V~~Psd~~E~~~~l~~a~~~----~~~Pv~ir~~r~~ 562 (722)
+++.+-.+ .+...++.++..+++.|+.. ..+||+|-+|...
T Consensus 122 l~~~itk~-s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv 166 (591)
T PRK11269 122 IAKPVTKW-AVTVREPALVPRVFQQAFHLMRSGRPGPVLIDLPFDV 166 (591)
T ss_pred HhhcceeE-EEEcCCHHHHHHHHHHHHHHHhhCCCCeEEEEeChhh
Confidence 77765444 34557888888888888763 2479999998764
No 230
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=91.63 E-value=3.8 Score=48.24 Aligned_cols=115 Identities=15% Similarity=0.124 Sum_probs=80.3
Q ss_pred CceeecccchHHHHHHHHHHhcC-CCeeEEE-ecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCc--cCCCCCCcCcHHH
Q 004946 443 ERYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFD 518 (722)
Q Consensus 443 ~R~~d~GIaE~~av~~AaGlA~~-G~~p~~~-t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~d 518 (722)
=|++.+ -.|++++.+|.|.|.. |...+|. ++.+.+..++.-+ ..+-..+.||+++...... .+. ..+|....
T Consensus 53 i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~~~gl-a~A~~~~~Pvl~I~G~~~~~~~~~--~~~q~~d~ 128 (570)
T PRK06725 53 LKHILT-RHEQAAIHAAEGYARASGKVGVVFATSGPGATNLVTGL-ADAYMDSIPLVVITGQVATPLIGK--DGFQEADV 128 (570)
T ss_pred CcEEEe-cCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHH-HHHhhcCcCEEEEecCCCcccccC--CCCcccch
Confidence 477776 8999999999999986 5444443 5888887777544 5666779999988643332 122 23555555
Q ss_pred HHHhcCCCCcEEEeeCCHHHHHHHHHHHhhh----CCCCEEEEecCCC
Q 004946 519 ITFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (722)
Q Consensus 519 ~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~----~~~Pv~ir~~r~~ 562 (722)
..+++.+-.+ .+...+++++..+++.|+.. ..+||+|.+|...
T Consensus 129 ~~l~~~itk~-~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv 175 (570)
T PRK06725 129 VGITVPVTKH-NYQVRDVNQLSRIVQEAFYIAESGRPGPVLIDIPKDV 175 (570)
T ss_pred hhhhhcccee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEccccch
Confidence 5666765544 34567889999998888763 3589999999764
No 231
>PRK06163 hypothetical protein; Provisional
Probab=91.53 E-value=7.1 Score=39.56 Aligned_cols=145 Identities=12% Similarity=0.183 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCCCCc-cchHHHHHhCCCceeecccchHHHHHHHHHHhcCC-CeeEEEec--HhhHHH
Q 004946 405 DCFIEALVMEAEKDKDIVVVHAGMEMD-LSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGG-LKPFCIIP--SAFLQR 480 (722)
Q Consensus 405 ~a~~~~L~~~~~~d~~iv~i~ad~~~~-~~l~~f~~~~p~R~~d~GIaE~~av~~AaGlA~~G-~~p~~~t~--~~Fl~r 480 (722)
+.+-+.|.+.+..| .+++ .|.+.. ..+-.. ...|.+++.+| +=-.++..|.|++++. -++++++. ..|+.-
T Consensus 16 ~~~i~~l~~~l~~~-~~iv--~D~G~~~~~~~~~-~~~~~~~~~~G-sMG~glpaAiGaalA~p~r~Vv~i~GDG~f~m~ 90 (202)
T PRK06163 16 FDLTCRLVAKLKDE-EAVI--GGIGNTNFDLWAA-GQRPQNFYMLG-SMGLAFPIALGVALAQPKRRVIALEGDGSLLMQ 90 (202)
T ss_pred HHHHHHHHHhcCCC-CEEE--ECCCccHHHHHHh-hcCCCCeEeec-ccccHHHHHHHHHHhCCCCeEEEEEcchHHHHH
Confidence 34445565555433 3433 354431 112111 23577777433 1222344677777653 45666664 555544
Q ss_pred HHHHHHHHHh-cCCCCEEEEE-eCCCccCC-CCCCc--CcHHHHH-HhcCCCCcE-EEeeCCHHHHHHHHHHHhhhCCCC
Q 004946 481 AYDQVVNDVD-QQRLPVRFVI-TSAGLVGS-DGPTQ--CGAFDIT-FMSCLPNMI-VMAPSDEDELVDMVATVASIDDRP 553 (722)
Q Consensus 481 a~dqi~~~~a-~~~lpVv~v~-~~~G~~G~-dG~TH--~~~~d~a-~~~~iP~l~-V~~Psd~~E~~~~l~~a~~~~~~P 553 (722)
.- .+ ..++ +.++|+++++ +..++ |. .+..+ ...-|+. +.+.+ |+. -+...+.+|+...++++++ .++|
T Consensus 91 ~~-eL-~Ta~~~~~lpi~ivV~NN~~y-g~~~~~~~~~~~~~Df~~lA~a~-G~~~~~~v~~~~el~~al~~a~~-~~~p 165 (202)
T PRK06163 91 LG-AL-GTIAALAPKNLTIIVMDNGVY-QITGGQPTLTSQTVDVVAIARGA-GLENSHWAADEAHFEALVDQALS-GPGP 165 (202)
T ss_pred HH-HH-HHHHHhcCCCeEEEEEcCCch-hhcCCccCCCCCCCCHHHHHHHC-CCceEEEeCCHHHHHHHHHHHHh-CCCC
Confidence 43 23 3333 4467877766 44443 21 11111 1112333 33333 564 4567899999999999986 5889
Q ss_pred EEEEec
Q 004946 554 VCFRYP 559 (722)
Q Consensus 554 v~ir~~ 559 (722)
++|-..
T Consensus 166 ~lIeV~ 171 (202)
T PRK06163 166 SFIAVR 171 (202)
T ss_pred EEEEEE
Confidence 997553
No 232
>PLN02573 pyruvate decarboxylase
Probab=91.52 E-value=3.7 Score=48.38 Aligned_cols=115 Identities=12% Similarity=0.172 Sum_probs=74.1
Q ss_pred ceeecccchHHHHHHHHHHhcC-CCeeEEE-ecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCc--cCCCCCCcCc----
Q 004946 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCG---- 515 (722)
Q Consensus 444 R~~d~GIaE~~av~~AaGlA~~-G~~p~~~-t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~---- 515 (722)
+++.+ -.|++++.+|-|.|.. | .++|. ++.+.+..+...+ ..+-.-+.||+++...... .+.++..||.
T Consensus 56 ~~i~~-rhE~~A~~mAdgyaR~tg-~gv~~~t~GpG~~n~~~gl-a~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~ 132 (578)
T PLN02573 56 NLIGC-CNELNAGYAADGYARARG-VGACVVTFTVGGLSVLNAI-AGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLP 132 (578)
T ss_pred eEEEe-CCHHHHHHHHHHHHHHhC-CCeEEEecCccHHHHHHHH-HHHHHhCCCEEEEECCCChhhhhcCceeeeecCCC
Confidence 56666 8999999999999986 7 66665 4777776666544 4556679999998743222 2444445543
Q ss_pred --HHHHHHhcCCCCcEEEeeCCHHHHHHHHHHHhhh---CCCCEEEEecCCC
Q 004946 516 --AFDITFMSCLPNMIVMAPSDEDELVDMVATVASI---DDRPVCFRYPRGA 562 (722)
Q Consensus 516 --~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~---~~~Pv~ir~~r~~ 562 (722)
..+..+++.+-.+ .....+++++..++..|+.. ..+||+|-+|+..
T Consensus 133 ~~~~~~~~~~~itk~-s~~v~~~~~~~~~l~~A~~~A~~~~gPV~l~iP~Dv 183 (578)
T PLN02573 133 DFSQELRCFQTVTCY-QAVINNLEDAHELIDTAISTALKESKPVYISVSCNL 183 (578)
T ss_pred ChHHHHHHhhceEEE-EEEeCCHHHHHHHHHHHHHHHHhcCCCEEEEeehhh
Confidence 2234555654433 23445566666555555542 4589999999874
No 233
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=91.46 E-value=4 Score=48.00 Aligned_cols=114 Identities=11% Similarity=0.010 Sum_probs=75.2
Q ss_pred ceeecccchHHHHHHHHHHhcCCCeeEEEe--cHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCc--cCCCCCCcCcHHHH
Q 004946 444 RYFDVGMAEQHAVTFSAGLACGGLKPFCII--PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDI 519 (722)
Q Consensus 444 R~~d~GIaE~~av~~AaGlA~~G~~p~~~t--~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~d~ 519 (722)
|++.+ -.|++++.+|.|.|...-+|-+++ +.+....+..-+ ..+...++||+++...... .+. ..||.....
T Consensus 43 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~gi-~~A~~~~~Pvl~i~G~~~~~~~~~--~~~Q~~d~~ 118 (574)
T PRK09124 43 EWMHT-RHEEVAAFAAGAEAQLTGELAVCAGSCGPGNLHLINGL-FDCHRNHVPVLAIAAHIPSSEIGS--GYFQETHPQ 118 (574)
T ss_pred cEEEe-CcHHHHHHHHHHHHHhhCCcEEEEECCCCCHHHHHHHH-HHHhhcCCCEEEEecCCccccCCC--CCccccChh
Confidence 66665 799999999999999844554443 677776666544 5667789999988633222 232 246766666
Q ss_pred HHhcCCCCcEEEeeCCHHHHHHHHHHHhhh---CCCCEEEEecCCC
Q 004946 520 TFMSCLPNMIVMAPSDEDELVDMVATVASI---DDRPVCFRYPRGA 562 (722)
Q Consensus 520 a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~---~~~Pv~ir~~r~~ 562 (722)
.+++.+-.+ .....+++++...+..|+.. ..+||+|-+|...
T Consensus 119 ~l~~~itk~-~~~v~~~~~~~~~i~~A~~~A~~~~gPV~l~iP~Dv 163 (574)
T PRK09124 119 ELFRECSHY-CELVSNPEQLPRVLAIAMRKAILNRGVAVVVLPGDV 163 (574)
T ss_pred hhcccceee-eEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeChhh
Confidence 777765443 23456777766656555542 4589999998764
No 234
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=91.30 E-value=4.5 Score=47.64 Aligned_cols=115 Identities=14% Similarity=0.149 Sum_probs=79.4
Q ss_pred CceeecccchHHHHHHHHHHhcC-CCeeEEE-ecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCc--cCCCCCCcCcHHH
Q 004946 443 ERYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFD 518 (722)
Q Consensus 443 ~R~~d~GIaE~~av~~AaGlA~~-G~~p~~~-t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~d 518 (722)
=|++.+ -.|++++.+|.|.|.. |...+|. ++.+.+..+.--+ ..+-..+.||+++...... .+. ..+|....
T Consensus 43 i~~v~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~l~gi-a~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~ 118 (572)
T PRK08979 43 IEHILV-RHEQAAVHMADGYARATGKVGVVLVTSGPGATNTITGI-ATAYMDSIPMVVLSGQVPSNLIGN--DAFQECDM 118 (572)
T ss_pred CeEEEe-CcHHHHHHHHHHHHHHhCCCeEEEECCCchHhHHHHHH-HHHhhcCCCEEEEecCCCccccCC--CCCcccch
Confidence 378877 8999999999999986 6544444 4788877777543 5666779999988643332 122 23555555
Q ss_pred HHHhcCCCCcEEEeeCCHHHHHHHHHHHhhh----CCCCEEEEecCCC
Q 004946 519 ITFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (722)
Q Consensus 519 ~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~----~~~Pv~ir~~r~~ 562 (722)
..+++.+=.+ .....+++++...+..|+.. ..+||+|.+|...
T Consensus 119 ~~~~~~itk~-~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 165 (572)
T PRK08979 119 IGISRPVVKH-SFLVKDAEDIPEIIKKAFYIASTGRPGPVVIDLPKDC 165 (572)
T ss_pred hHHhhhceeE-EEecCCHHHHHHHHHHHHHHHhCCCCCcEEEecCHhH
Confidence 5666765443 34556788888888888763 3479999998764
No 235
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=91.13 E-value=5.6 Score=46.98 Aligned_cols=116 Identities=8% Similarity=-0.002 Sum_probs=78.6
Q ss_pred ceeecccchHHHHHHHHHHhcCC-CeeEEE--ecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCccCCCCCCcCcHHHHH
Q 004946 444 RYFDVGMAEQHAVTFSAGLACGG-LKPFCI--IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDIT 520 (722)
Q Consensus 444 R~~d~GIaE~~av~~AaGlA~~G-~~p~~~--t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~d~a 520 (722)
|++.+ -.|++++.+|-|.|... .+|-++ |+.+.+..++--+ ..+..-+.||+++.............+|......
T Consensus 43 ~~V~~-rhE~~A~~mAdgyaR~t~g~~gv~~~t~GpG~~N~~~gl-a~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~D~~~ 120 (588)
T TIGR01504 43 RHILA-RHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTDMITGL-YSASADSIPILCITGQAPRARLHKEDFQAVDIAA 120 (588)
T ss_pred cEEee-CCHHHHHHHHHHHHHhcCCCeEEEEECCCccHHHHHHHH-HHHhhcCCCEEEEecCCCccccCCCcccccCHHH
Confidence 67665 78999999999999863 444443 4778777776544 5666789999998743332111122366655556
Q ss_pred HhcCCCCcEEEeeCCHHHHHHHHHHHhhh----CCCCEEEEecCCC
Q 004946 521 FMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (722)
Q Consensus 521 ~~~~iP~l~V~~Psd~~E~~~~l~~a~~~----~~~Pv~ir~~r~~ 562 (722)
+++.+-.+ .+...++.++..+++.|+.. ..+||+|-+|+..
T Consensus 121 ~~~~vtk~-~~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~Dv 165 (588)
T TIGR01504 121 IAKPVSKM-AVTVREAALVPRVLQQAFHLMRSGRPGPVLIDLPFDV 165 (588)
T ss_pred HhhhhceE-EEEcCCHHHHHHHHHHHHHHHccCCCCeEEEEeCcch
Confidence 77765444 34456888888888888863 3469999999864
No 236
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=91.10 E-value=1.8 Score=51.04 Aligned_cols=117 Identities=12% Similarity=0.074 Sum_probs=78.0
Q ss_pred CceeecccchHHHHHHHHHHhcCCCe-eEEE-ecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCccCCCCCCcCcHHHHH
Q 004946 443 ERYFDVGMAEQHAVTFSAGLACGGLK-PFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDIT 520 (722)
Q Consensus 443 ~R~~d~GIaE~~av~~AaGlA~~G~~-p~~~-t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~d~a 520 (722)
=||+.+ -.|++++.+|-|.|....+ .+|. ++.+.+..+.--+ ..+-..+.||+++.........+..++|......
T Consensus 39 i~~v~~-rhE~~A~~~Adgyar~tgk~gv~~~t~GPG~~n~~~~i-~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~id~~~ 116 (575)
T TIGR02720 39 IHYIQV-RHEEVGALAAAADAKLTGKIGVCFGSAGPGATHLLNGL-YDAKEDHVPVLALVGQVPTTGMNMDTFQEMNENP 116 (575)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHhhCCceEEEeCCCCcHHHHHHHH-HHHhhcCCCEEEEecCCccccCCCCCcceechhh
Confidence 467777 8999999999999986444 4433 4788887777544 5666789999998744333222334577766666
Q ss_pred HhcCCCCcEEEeeCCHHHHHHHHHHHhh---hCCCCEEEEecCCC
Q 004946 521 FMSCLPNMIVMAPSDEDELVDMVATVAS---IDDRPVCFRYPRGA 562 (722)
Q Consensus 521 ~~~~iP~l~V~~Psd~~E~~~~l~~a~~---~~~~Pv~ir~~r~~ 562 (722)
+++.+-.+ .....++.++...+..|+. ...+||+|-+|...
T Consensus 117 ~~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~Dv 160 (575)
T TIGR02720 117 IYADVAVY-NRTAMTAESLPHVIDEAIRRAYAHNGVAVVTIPVDF 160 (575)
T ss_pred hhhhcceE-EEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEECcch
Confidence 77755433 2344556666665555543 25689999999764
No 237
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=90.99 E-value=0.73 Score=46.69 Aligned_cols=116 Identities=16% Similarity=0.129 Sum_probs=65.2
Q ss_pred hCCCceeeccc-c-hHHHHHHHHHHhcCC-CeeEEEe--cHhhHHHHHHHHHHHHhcCCCCEEEEE-eCCCcc-------
Q 004946 440 KFPERYFDVGM-A-EQHAVTFSAGLACGG-LKPFCII--PSAFLQRAYDQVVNDVDQQRLPVRFVI-TSAGLV------- 506 (722)
Q Consensus 440 ~~p~R~~d~GI-a-E~~av~~AaGlA~~G-~~p~~~t--~~~Fl~ra~dqi~~~~a~~~lpVv~v~-~~~G~~------- 506 (722)
..|.+|+..+- . =-.+++.|.|++++. -++++++ -..|+.-. |-+..+...++|+++++ ++.|+.
T Consensus 36 ~~~~~~~~~~~~gsmG~~lpaAiGa~la~p~~~vv~i~GDGsf~m~~--~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~ 113 (205)
T cd02003 36 RTPGGYHLEYGYSCMGYEIAAGLGAKLAKPDREVYVLVGDGSYLMLH--SEIVTAVQEGLKIIIVLFDNHGFGCINNLQE 113 (205)
T ss_pred CCCCcEEcCCCcchhhhHHHHHHHHHHhCCCCeEEEEEccchhhccH--HHHHHHHHcCCCCEEEEEECCccHHHHHHHH
Confidence 45788886422 1 122344666666553 4566665 35665432 33345677899976666 554431
Q ss_pred --CCC--CCCcC-------------cHHHHHHhcCCCCcEEEeeCCHHHHHHHHHHHhhhCCCCEEEEe
Q 004946 507 --GSD--GPTQC-------------GAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRY 558 (722)
Q Consensus 507 --G~d--G~TH~-------------~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~~~~Pv~ir~ 558 (722)
+.. +.... ...|..-+..--|+..+...+++|+...++.|++ .++|++|-.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~-~~gp~lIeV 181 (205)
T cd02003 114 STGSGSFGTEFRDRDQESGQLDGALLPVDFAANARSLGARVEKVKTIEELKAALAKAKA-SDRTTVIVI 181 (205)
T ss_pred HhcCccccchhcccccccccccCCCCCCCHHHHHHhCCCEEEEECCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 100 00000 0123322222236777777999999999999986 688998754
No 238
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=90.86 E-value=1.8 Score=50.91 Aligned_cols=117 Identities=12% Similarity=0.075 Sum_probs=79.4
Q ss_pred CceeecccchHHHHHHHHHHhcCCCeeEEE--ecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCccCCCCCCcCcHHHHH
Q 004946 443 ERYFDVGMAEQHAVTFSAGLACGGLKPFCI--IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDIT 520 (722)
Q Consensus 443 ~R~~d~GIaE~~av~~AaGlA~~G~~p~~~--t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~d~a 520 (722)
=+++.+ ..|++++.+|.|.|..--+|-++ +..+.+..++--+ ..+...+.||+++.........+-..+|......
T Consensus 50 i~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~~~gl-~~A~~~~~Pvl~I~G~~~~~~~~~~~~Q~~d~~~ 127 (578)
T PRK06112 50 IRQIAY-RTENAGGAMADGYARVSGKVAVVTAQNGPAATLLVAPL-AEALKASVPIVALVQDVNRDQTDRNAFQELDHIA 127 (578)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHHhCCCEEEEeCCCCcHHHHHHHH-HHHhhcCCCEEEEecCCccccCCCCCccccChhh
Confidence 477777 79999999999999874444443 4677777776544 5667789999988643332111223466665667
Q ss_pred HhcCCCCcEEEeeCCHHHHHHHHHHHhhh----CCCCEEEEecCCC
Q 004946 521 FMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (722)
Q Consensus 521 ~~~~iP~l~V~~Psd~~E~~~~l~~a~~~----~~~Pv~ir~~r~~ 562 (722)
+++.+-.+ .+...+++++...+..|+.. ..+||+|-+|...
T Consensus 128 l~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~Dv 172 (578)
T PRK06112 128 LFQSCTKW-VRRVTVAERIDDYVDQAFTAATSGRPGPVVLLLPADL 172 (578)
T ss_pred hhccccce-EEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEcCHhH
Confidence 77766544 34566777887777777753 3479999998763
No 239
>PLN02470 acetolactate synthase
Probab=90.75 E-value=4.3 Score=47.87 Aligned_cols=115 Identities=13% Similarity=0.113 Sum_probs=79.6
Q ss_pred CceeecccchHHHHHHHHHHhcC-CCeeEE-EecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCc--cCCCCCCcCcHHH
Q 004946 443 ERYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFD 518 (722)
Q Consensus 443 ~R~~d~GIaE~~av~~AaGlA~~-G~~p~~-~t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~d 518 (722)
=|++.+ -.|++++.+|.|.|.. |...+| .++.+.+..++.-+ ..+-..+.||+++...... .+. ..+|....
T Consensus 52 i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~l~gi-a~A~~~~~Pvl~I~G~~~~~~~~~--~~~q~~d~ 127 (585)
T PLN02470 52 IRNVLC-RHEQGEVFAAEGYAKASGKVGVCIATSGPGATNLVTGL-ADALLDSVPLVAITGQVPRRMIGT--DAFQETPI 127 (585)
T ss_pred ceEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHH-HHHHhcCCcEEEEecCCChhhcCC--CcCcccch
Confidence 377877 8999999999999986 544444 35888888777544 5667789999988633222 122 23555555
Q ss_pred HHHhcCCCCcEEEeeCCHHHHHHHHHHHhhh----CCCCEEEEecCCC
Q 004946 519 ITFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (722)
Q Consensus 519 ~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~----~~~Pv~ir~~r~~ 562 (722)
..+++.+-.+ .+...+++++..++..|+.. ..+||+|-+|...
T Consensus 128 ~~l~~~~tk~-~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv 174 (585)
T PLN02470 128 VEVTRSITKH-NYLVMDVEDIPRVIREAFFLASSGRPGPVLVDIPKDI 174 (585)
T ss_pred hhhhhhheEE-EEEcCCHHHHHHHHHHHHHHhcCCCCCeEEEEecCch
Confidence 5666654433 24456888999988888764 3589999999764
No 240
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=90.71 E-value=4 Score=48.34 Aligned_cols=146 Identities=10% Similarity=0.073 Sum_probs=90.1
Q ss_pred HHHHHHHHhcC--CCEEEEecCCCCccch---HHHHHhCC-CceeecccchHHHHHHHHHHhcC-CCeeEEE-ecHhhHH
Q 004946 408 IEALVMEAEKD--KDIVVVHAGMEMDLSL---QLFQEKFP-ERYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQ 479 (722)
Q Consensus 408 ~~~L~~~~~~d--~~iv~i~ad~~~~~~l---~~f~~~~p-~R~~d~GIaE~~av~~AaGlA~~-G~~p~~~-t~~~Fl~ 479 (722)
++.|.+.+++. ..|+.+. |++-+ +.+.+..+ =+|+.+ -.|++++.+|-|.|.. |...+|. ++.+.+.
T Consensus 6 a~~l~~~L~~~GV~~vFGvp----G~~~~~l~dal~~~~~~i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~ 80 (597)
T PRK08273 6 ADFILERLREWGVRRVFGYP----GDGINGLLGALGRADDKPEFVQA-RHEEMAAFMAVAHAKFTGEVGVCLATSGPGAI 80 (597)
T ss_pred HHHHHHHHHHCCCCEEEEeC----CCchHHHHHHHHhccCCCeEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccHH
Confidence 45555555543 3444443 33322 34433223 377777 8999999999999987 5444443 5888887
Q ss_pred HHHHHHHHHHhcCCCCEEEEEeCCCc--cCCCCCCcCcHHHHHHhcCCC-CcEEEeeCCHHHHHHHHHHHhhh---CCCC
Q 004946 480 RAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDITFMSCLP-NMIVMAPSDEDELVDMVATVASI---DDRP 553 (722)
Q Consensus 480 ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~d~a~~~~iP-~l~V~~Psd~~E~~~~l~~a~~~---~~~P 553 (722)
.++.-+ .++-.-+.||+++...... .+.+ .+|......+++.+- .+ .....++.++...+..|+.. ..+|
T Consensus 81 n~~~gi-~~A~~d~vPvl~I~G~~~~~~~~~~--~~q~~d~~~l~~~vt~k~-~~~v~~~~~~~~~l~~A~~~A~~~~gP 156 (597)
T PRK08273 81 HLLNGL-YDAKLDHVPVVAIVGQQARAALGGH--YQQEVDLQSLFKDVAGAF-VQMVTVPEQLRHLVDRAVRTALAERTV 156 (597)
T ss_pred HHHHHH-HHHHhcCCCEEEEecCCchhhcCCC--CCCccCHHHHHHHHHHHH-eeEeCCHHHHHHHHHHHHHHHhhCCCC
Confidence 777544 5667789999988643332 2332 355544445666543 22 34566777777777666652 4579
Q ss_pred EEEEecCCC
Q 004946 554 VCFRYPRGA 562 (722)
Q Consensus 554 v~ir~~r~~ 562 (722)
|+|.+|...
T Consensus 157 V~i~iP~Dv 165 (597)
T PRK08273 157 TAVILPNDV 165 (597)
T ss_pred EEEEeCcch
Confidence 999999764
No 241
>PF09363 XFP_C: XFP C-terminal domain; InterPro: IPR018969 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=90.70 E-value=3.8 Score=41.18 Aligned_cols=115 Identities=17% Similarity=0.199 Sum_probs=70.5
Q ss_pred CcEEEEEechhh-HHHHHHHHHHHhc--CCcEEEeecCc---cc-----c--chHHHHHHHhcCCCeEEEEcCCCCCChH
Q 004946 589 KDVALLGYGAMV-QNCLKARALLSKL--GIDVTVADARF---CK-----P--LDIKLVRELCQNHTFLITVEEGSIGGFG 655 (722)
Q Consensus 589 ~dv~lva~Gs~v-~~aleAa~~L~~~--Gi~v~Vidl~~---lk-----P--ld~e~i~~~~~~~~~vvvvEe~~~gG~g 655 (722)
.||+|.|.|... .++++|++.|++. +++++|||+.= |. | |+.+.+.++.-..+.||+. .-|+.
T Consensus 35 PDVVlA~aGd~pT~E~lAA~~lLr~~~P~lkiRvVNVvDLm~L~~~~~hPhglsd~~Fd~lFT~DkPViFa----fHGYp 110 (203)
T PF09363_consen 35 PDVVLACAGDVPTLEVLAAASLLREHFPELKIRVVNVVDLMKLQPPSEHPHGLSDEEFDALFTKDKPVIFA----FHGYP 110 (203)
T ss_dssp -SEEEEEESHHHHHHHHHHHHHHHHT--T--EEEEEESBGGGGS-TTT-TTS--HHHHHHHH-SSS-EEEE----ESSEH
T ss_pred CCEEEEecCchhhHHHHHHHHHHHHhccCceEEEEEEeEccccCCCCCCCCcCCHHHHHHhcCCCCCEEEE----cCCCH
Confidence 699999999977 7999999999998 99998877653 32 2 6678888888777887753 34566
Q ss_pred HHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHh
Q 004946 656 SHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLL 711 (722)
Q Consensus 656 s~v~~~l~~~~~~~~~~~v~~ig~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~ll 711 (722)
..|-..+..+. ..-++..-|..+ =+..-++=++.-..++|-=+++..+.+.+
T Consensus 111 ~~i~~L~~~R~---n~~~~hV~GY~E-eGttTTPFDM~vlN~~dRfhLa~dai~~~ 162 (203)
T PF09363_consen 111 WLIHRLLFGRP---NHDRFHVHGYRE-EGTTTTPFDMRVLNGMDRFHLAKDAIRRV 162 (203)
T ss_dssp HHHHHHTTTST---TGGGEEEEEE-S----SS-HHHHHHCTT-SHHHHHHHHHHHH
T ss_pred HHHHHHhcCCC---CCCCeEEEeecc-CCCcCchHHHHHHhCCCHHHHHHHHHHHh
Confidence 66655554332 123455555432 23344666777778888767766665544
No 242
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=90.63 E-value=0.97 Score=45.42 Aligned_cols=145 Identities=11% Similarity=0.106 Sum_probs=79.3
Q ss_pred HHHHHHHHHhcCCCEEEEecCCCCccc--hHHHHHhCCCceeeccc-ch-HHHHHHHHHHhcC-CCeeEEEe--cHhhHH
Q 004946 407 FIEALVMEAEKDKDIVVVHAGMEMDLS--LQLFQEKFPERYFDVGM-AE-QHAVTFSAGLACG-GLKPFCII--PSAFLQ 479 (722)
Q Consensus 407 ~~~~L~~~~~~d~~iv~i~ad~~~~~~--l~~f~~~~p~R~~d~GI-aE-~~av~~AaGlA~~-G~~p~~~t--~~~Fl~ 479 (722)
+.+.|.+.+.+| .+ +..|.+.... ...+.-..|.+|+..+- .= -..+..|.|++++ .-++++++ -..|+.
T Consensus 9 ~~~~l~~~l~~~-~i--vv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la~p~r~vv~i~GDG~f~m 85 (196)
T cd02013 9 VLRELEKAMPED-AI--VSTDIGNICSVANSYLRFEKPRSFIAPLSFGNCGYALPAIIGAKAAAPDRPVVAIAGDGAWGM 85 (196)
T ss_pred HHHHHHHHCCCC-EE--EEECCcHHHHHHHHhcCcCCCCeEEcCCCCcccccHHHHHHHHHHhCCCCcEEEEEcchHHhc
Confidence 445565555433 23 3335443221 12233345788886421 11 2355677777765 34566665 466665
Q ss_pred HHHHHHHHHHhcCCCCEEEEE-eCCCccCC--------CCC-----CcCcHHHHHHhcCCCCcEEEeeCCHHHHHHHHHH
Q 004946 480 RAYDQVVNDVDQQRLPVRFVI-TSAGLVGS--------DGP-----TQCGAFDITFMSCLPNMIVMAPSDEDELVDMVAT 545 (722)
Q Consensus 480 ra~dqi~~~~a~~~lpVv~v~-~~~G~~G~--------dG~-----TH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~ 545 (722)
..- .+ ..+...++|+++++ ++.|+ |. .+. .+. ..|+.-+..--|+.-+.-.++.|+...+++
T Consensus 86 ~~~-eL-~Ta~~~~lpvi~vV~NN~~y-g~~~~~q~~~~~~~~~~~~~~-~~d~~~lA~a~G~~~~~v~~~~el~~al~~ 161 (196)
T cd02013 86 SMM-EI-MTAVRHKLPVTAVVFRNRQW-GAEKKNQVDFYNNRFVGTELE-SESFAKIAEACGAKGITVDKPEDVGPALQK 161 (196)
T ss_pred cHH-HH-HHHHHhCCCeEEEEEECchh-HHHHHHHHHHcCCCcccccCC-CCCHHHHHHHCCCEEEEECCHHHHHHHHHH
Confidence 443 33 45677799988777 55553 21 010 011 122222222226667788899999999999
Q ss_pred Hhh--hCCCCEEEEe
Q 004946 546 VAS--IDDRPVCFRY 558 (722)
Q Consensus 546 a~~--~~~~Pv~ir~ 558 (722)
|++ +.++|++|-.
T Consensus 162 a~~~~~~~~p~liev 176 (196)
T cd02013 162 AIAMMAEGKTTVIEI 176 (196)
T ss_pred HHhcCCCCCeEEEEE
Confidence 985 1478998854
No 243
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=90.47 E-value=1.6 Score=51.10 Aligned_cols=114 Identities=17% Similarity=0.145 Sum_probs=79.8
Q ss_pred ceeecccchHHHHHHHHHHhcC-CCeeEEE-ecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCc--cCCCCCCcCcHHHH
Q 004946 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDI 519 (722)
Q Consensus 444 R~~d~GIaE~~av~~AaGlA~~-G~~p~~~-t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~d~ 519 (722)
|++.+ ..|++++.+|.|.|.. |...+|. |+.+.+..++--+ ..+-..+.||+++...... .+. ..+|.....
T Consensus 40 ~~v~~-~hE~~A~~~Adgyar~sg~~gv~~~t~GpG~~n~~~~l-~~A~~~~~Pvl~i~g~~~~~~~~~--~~~q~~d~~ 115 (548)
T PRK08978 40 EHLLC-RHEQGAAMAAIGYARATGKVGVCIATSGPGATNLITGL-ADALLDSVPVVAITGQVSSPLIGT--DAFQEIDVL 115 (548)
T ss_pred eEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHH-HHHhhcCCCEEEEecCCCccccCC--CCCcccchh
Confidence 67776 8999999999999997 5444433 4888887777544 5667789999988744332 232 235655555
Q ss_pred HHhcCCCCcEEEeeCCHHHHHHHHHHHhhh----CCCCEEEEecCCC
Q 004946 520 TFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (722)
Q Consensus 520 a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~----~~~Pv~ir~~r~~ 562 (722)
.+++.+-.+.. .-.++.++..++..|+.. ..+||+|-+|...
T Consensus 116 ~~~~~~tk~~~-~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv 161 (548)
T PRK08978 116 GLSLACTKHSF-LVQSLEELPEIMAEAFEIASSGRPGPVLVDIPKDI 161 (548)
T ss_pred ccccCceeeEE-EECCHHHHHHHHHHHHHHHhcCCCCcEEEecChhh
Confidence 66776655543 335788888888888763 3479999998754
No 244
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=90.46 E-value=6 Score=42.55 Aligned_cols=103 Identities=9% Similarity=0.138 Sum_probs=66.7
Q ss_pred HHHHHHHHHhcC----CC-eeEEEe--cHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCccCCCCCC--------------
Q 004946 454 HAVTFSAGLACG----GL-KPFCII--PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPT-------------- 512 (722)
Q Consensus 454 ~av~~AaGlA~~----G~-~p~~~t--~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~T-------------- 512 (722)
++.++|.|++.+ +. ++++++ -+.|+.-++..+ ..+...+.++++++-..+..+.-|.+
T Consensus 73 ~~~a~a~Gi~~a~~~~~~~~~Vv~~~GDG~~~dIG~~~L-~~a~~r~~ni~~ivlDNe~Y~nTGgQ~S~~Tp~Ga~t~ts 151 (299)
T PRK11865 73 NAAAVASGIERAVKALGKKVNVVAIGGDGGTADIGFQSL-SGAMERGHNILYLMYDNEAYMNTGIQRSGSTPFGASTTTS 151 (299)
T ss_pred chHHHHHHHHHHHHHhcCCCeEEEEeCCchHhhccHHHH-HHHHHcCCCeEEEEECCccccCCCCCCCCCCCCCcccccC
Confidence 466777777665 32 245555 467777777544 56677888888777333322111111
Q ss_pred ------------cCcHHHHHHhcCCCCcEEEeeCCHHHHHHHHHHHhhhCCCCEEEEe
Q 004946 513 ------------QCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRY 558 (722)
Q Consensus 513 ------------H~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~~~~Pv~ir~ 558 (722)
.-....++.....|-+....|+++.|+...++.|++ .++|.+|..
T Consensus 152 p~Gk~~~G~~~~kkd~~~Ia~a~g~~YVA~~~~~~~~~l~~~i~~A~~-~~Gps~I~v 208 (299)
T PRK11865 152 PAGKYSRGEDRPKKNMPLIMAAHGIPYVATASIGYPEDFMEKVKKAKE-VEGPAYIQV 208 (299)
T ss_pred CCCcccCCCCCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 122344444466777888999999999999999986 689998854
No 245
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=90.43 E-value=0.9 Score=45.86 Aligned_cols=147 Identities=14% Similarity=0.123 Sum_probs=79.9
Q ss_pred HHHHHHHHHhcCCCEEEEecCCCCccc--hHHHHHhCCCceeeccc-c-hHHHHHHHHHHhcC-CCeeEEEec--HhhHH
Q 004946 407 FIEALVMEAEKDKDIVVVHAGMEMDLS--LQLFQEKFPERYFDVGM-A-EQHAVTFSAGLACG-GLKPFCIIP--SAFLQ 479 (722)
Q Consensus 407 ~~~~L~~~~~~d~~iv~i~ad~~~~~~--l~~f~~~~p~R~~d~GI-a-E~~av~~AaGlA~~-G~~p~~~t~--~~Fl~ 479 (722)
+.+.|.+.+.+| .+++ .|.+...- ...+.-..|.+|++.+- . =-..+..|.|++++ .-++++++. ..|+.
T Consensus 13 ~~~~l~~~l~~d-~iiv--~d~G~~~~~~~~~~~~~~~~~~~~~~~~GsmG~~lpaaiGa~la~p~~~vv~i~GDG~f~m 89 (202)
T cd02006 13 VYEEMNKAFGRD-VRYV--TTIGLSQIAGAQMLHVYKPRHWINCGQAGPLGWTVPAALGVAAADPDRQVVALSGDYDFQF 89 (202)
T ss_pred HHHHHHhhCCCC-eEEE--ECCcHHHHHHHHhcCcCCCCeEEccCCccchhhhhHHHHhHHhhCCCCeEEEEEeChHhhc
Confidence 445555555433 3333 45442211 12333345788887642 2 11245577777765 346677664 66655
Q ss_pred HHHHHHHHHHhcCCCCEEEEEeCCCccCC---------CC----CCcCc---------HHHHHHhcCCCCcEEEeeCCHH
Q 004946 480 RAYDQVVNDVDQQRLPVRFVITSAGLVGS---------DG----PTQCG---------AFDITFMSCLPNMIVMAPSDED 537 (722)
Q Consensus 480 ra~dqi~~~~a~~~lpVv~v~~~~G~~G~---------dG----~TH~~---------~~d~a~~~~iP~l~V~~Psd~~ 537 (722)
..-+ +..+...++|+++++-+.+..|. +. ..+.. .-|.+-++.--|+.-+...++.
T Consensus 90 ~~~e--L~Ta~~~~lpviivV~NN~~yg~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~ 167 (202)
T cd02006 90 MIEE--LAVGAQHRIPYIHVLVNNAYLGLIRQAQRAFDMDYQVNLAFENINSSELGGYGVDHVKVAEGLGCKAIRVTKPE 167 (202)
T ss_pred cHHH--HHHHHHhCCCeEEEEEeCchHHHHHHHHHHhcCccccccccccccccccCCCCCCHHHHHHHCCCEEEEECCHH
Confidence 4432 34577789998877744332221 00 00110 0122222222266778889999
Q ss_pred HHHHHHHHHhh---hCCCCEEEEe
Q 004946 538 ELVDMVATVAS---IDDRPVCFRY 558 (722)
Q Consensus 538 E~~~~l~~a~~---~~~~Pv~ir~ 558 (722)
|+...+++|++ ..++|++|-.
T Consensus 168 el~~al~~a~~~~~~~~~p~liev 191 (202)
T cd02006 168 ELAAAFEQAKKLMAEHRVPVVVEA 191 (202)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEE
Confidence 99999999985 2578998854
No 246
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=90.41 E-value=3.9 Score=40.45 Aligned_cols=141 Identities=16% Similarity=0.261 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCCCCccc-hHHHHHhCCCceeecccchHHHHHHHHHHhcCCCeeEEEec--HhhHHHH
Q 004946 405 DCFIEALVMEAEKDKDIVVVHAGMEMDLS-LQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIP--SAFLQRA 481 (722)
Q Consensus 405 ~a~~~~L~~~~~~d~~iv~i~ad~~~~~~-l~~f~~~~p~R~~d~GIaE~~av~~AaGlA~~G~~p~~~t~--~~Fl~ra 481 (722)
+.+.+.|.+.+. +.+++ .|.+.... +-.+ ...|.+++..|.- -..+..|.|++++.-++++++. ..|+.-
T Consensus 2 ~~~~~~l~~~~~--~~~vv--~d~G~~~~~~~~~-~~~~~~~~~~g~m-G~~lp~AiGaala~~~~vv~i~GDG~f~m~- 74 (179)
T cd03372 2 RDAIKTLIADLK--DELVV--SNIGFPSKELYAA-GDRPLNFYMLGSM-GLASSIGLGLALAQPRKVIVIDGDGSLLMN- 74 (179)
T ss_pred HHHHHHHHHhCC--CCeEE--eCCCHhHHHHHHc-cCcccccccccch-hhHHHHHHHHHhcCCCcEEEEECCcHHHhC-
Confidence 345555665555 23333 35443321 1112 1346677643321 1334467777766437777774 445422
Q ss_pred HHHHHHHHhcCC-CCEEEE-EeCCCccCCCCCCcCc---HHHH-HHhcCCCCcEEEeeC-CHHHHHHHHHHHhhhCCCCE
Q 004946 482 YDQVVNDVDQQR-LPVRFV-ITSAGLVGSDGPTQCG---AFDI-TFMSCLPNMIVMAPS-DEDELVDMVATVASIDDRPV 554 (722)
Q Consensus 482 ~dqi~~~~a~~~-lpVv~v-~~~~G~~G~dG~TH~~---~~d~-a~~~~iP~l~V~~Ps-d~~E~~~~l~~a~~~~~~Pv 554 (722)
. |-+..++..+ .|++++ +++.++ +.-+..+.. .-|. .+...+ |+..+... +.+|+...+++++ ++|.
T Consensus 75 ~-~el~ta~~~~~~~l~vvV~NN~~~-~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~~el~~al~~a~---~gp~ 148 (179)
T cd03372 75 L-GALATIAAEKPKNLIIVVLDNGAY-GSTGNQPTHAGKKTDLEAVAKAC-GLDNVATVASEEAFEKAVEQAL---DGPS 148 (179)
T ss_pred H-HHHHHHHHcCCCCEEEEEEcCccc-cccCCCCCCCCCCCCHHHHHHHc-CCCeEEecCCHHHHHHHHHHhc---CCCE
Confidence 2 2234555566 456555 455553 221211111 1122 222332 55555666 9999999999996 6899
Q ss_pred EEEe
Q 004946 555 CFRY 558 (722)
Q Consensus 555 ~ir~ 558 (722)
+|-.
T Consensus 149 lIev 152 (179)
T cd03372 149 FIHV 152 (179)
T ss_pred EEEE
Confidence 8754
No 247
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=90.27 E-value=5.5 Score=46.73 Aligned_cols=115 Identities=17% Similarity=0.157 Sum_probs=77.3
Q ss_pred CceeecccchHHHHHHHHHHhcC-CCeeEEE-ecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCc--cCCCCCCcCcHHH
Q 004946 443 ERYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFD 518 (722)
Q Consensus 443 ~R~~d~GIaE~~av~~AaGlA~~-G~~p~~~-t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~d 518 (722)
=+++.+ -.|++++.+|.|.|.. |...+|. ++.+.+..++.-+ ..+-..+.||+++...... .+.+ .+|....
T Consensus 46 i~~v~~-~hE~~A~~~Adgyar~tg~~~v~~~t~GpG~~n~~~gl-~~A~~~~~Pvl~i~G~~~~~~~~~~--~~q~~d~ 121 (561)
T PRK06048 46 LRHILV-RHEQAAAHAADGYARATGKVGVCVATSGPGATNLVTGI-ATAYMDSVPIVALTGQVPRSMIGND--AFQEADI 121 (561)
T ss_pred CeEEEe-ccHHHHHHHHHHHHHHhCCCeEEEECCCCcHHHHHHHH-HHHhhcCCCEEEEeccCCccccCCC--Cccccch
Confidence 477777 8999999999999986 5433333 4788887777544 6777889999988643322 1322 2444433
Q ss_pred HHHhcCCCCcEEEeeCCHHHHHHHHHHHhhh----CCCCEEEEecCCC
Q 004946 519 ITFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (722)
Q Consensus 519 ~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~----~~~Pv~ir~~r~~ 562 (722)
..+++.+-.+ .+.-.++.++..++..|+.. ..+||+|.+|...
T Consensus 122 ~~~~~~itk~-s~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~dv 168 (561)
T PRK06048 122 TGITMPITKH-NYLVQDAKDLPRIIKEAFHIASTGRPGPVLIDLPKDV 168 (561)
T ss_pred hhhccCcceE-EEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEecChhh
Confidence 4555554333 23456788888888888763 3589999999764
No 248
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=90.00 E-value=5.6 Score=46.92 Aligned_cols=116 Identities=9% Similarity=-0.054 Sum_probs=77.9
Q ss_pred ceeecccchHHHHHHHHHHhcCCCeeEEEe--cHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCccCCCCCCcCcHHHHHH
Q 004946 444 RYFDVGMAEQHAVTFSAGLACGGLKPFCII--PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITF 521 (722)
Q Consensus 444 R~~d~GIaE~~av~~AaGlA~~G~~p~~~t--~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~d~a~ 521 (722)
|++.+ -.|++++.+|.|.|....+|-+++ ..+.+..++.-+ ..+-..+.||+++.........+-..+|...+..+
T Consensus 43 ~~i~~-rhE~~A~~mAdgyar~tgk~~v~~v~~GpG~~N~~~gl-~~A~~~~~Pvl~I~G~~~~~~~~~~~~Qe~d~~~l 120 (578)
T PRK06546 43 EWVHV-RHEEAAAFAAAAEAQLTGKLAVCAGSCGPGNLHLINGL-YDAHRSGAPVLAIASHIPSAQIGSGFFQETHPDRL 120 (578)
T ss_pred eEEEe-CcHHHHHHHHHhHHHhhCCceEEEECCCCcHHHHHHHH-HHHHhcCCCEEEEeCCCCccccCCCCccccChhhh
Confidence 67777 799999999999999854544443 677777776544 56677899999886432221111123565555667
Q ss_pred hcCCCCcEEEeeCCHHHHHHHHHHHhhh---CCCCEEEEecCCC
Q 004946 522 MSCLPNMIVMAPSDEDELVDMVATVASI---DDRPVCFRYPRGA 562 (722)
Q Consensus 522 ~~~iP~l~V~~Psd~~E~~~~l~~a~~~---~~~Pv~ir~~r~~ 562 (722)
++.+-.+ .+...+++++..++..|+.. ..+||+|-+|...
T Consensus 121 ~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~lP~Dv 163 (578)
T PRK06546 121 FVECSGY-CEMVSSAEQAPRVLHSAIQHAVAGGGVSVVTLPGDI 163 (578)
T ss_pred cccceee-EeEeCCHHHHHHHHHHHHHHHhcCCCCEEEEcChhh
Confidence 7755433 46667788888777776652 4579999998753
No 249
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=89.81 E-value=7 Score=45.78 Aligned_cols=116 Identities=10% Similarity=0.068 Sum_probs=79.9
Q ss_pred ceeecccchHHHHHHHHHHhcC-CCeeEEE-ecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCcc--CCCCCCcCcHHHH
Q 004946 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLV--GSDGPTQCGAFDI 519 (722)
Q Consensus 444 R~~d~GIaE~~av~~AaGlA~~-G~~p~~~-t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~--G~dG~TH~~~~d~ 519 (722)
|++.+ -.|++++.+|.|.|.. |...+|. ++.+.+..+.--+ ..+-..+.||+++....... +..-..+|.....
T Consensus 42 ~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~~gi-a~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~ 119 (554)
T TIGR03254 42 RYIGF-RHEQSAGYAAAAAGFLTQKPGVCLTVSAPGFLNGLTAL-ANATTNCFPMIMISGSSERHIVDLQQGDYEEMDQL 119 (554)
T ss_pred cEEEe-CCHHHHHHHHHHHHHHhCCCEEEEEccCccHHhHHHHH-HHHHhcCCCEEEEEccCCccccccCCCCcchhhHH
Confidence 78777 8999999999999987 5444444 4788887777543 56677899999886332221 1112246666666
Q ss_pred HHhcCCCCcEEEeeCCHHHHHHHHHHHhhh----CCCCEEEEecCCC
Q 004946 520 TFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (722)
Q Consensus 520 a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~----~~~Pv~ir~~r~~ 562 (722)
.+++.+-.+ .+...++.++..++..|+.. ..+||+|-+|...
T Consensus 120 ~~~~~vtk~-~~~v~~~~~~~~~i~rA~~~A~~~~pGPV~l~iP~Dv 165 (554)
T TIGR03254 120 AAAKPFAKA-AYRVLRAEDIGIGIARAIRTAVSGRPGGVYLDLPAAV 165 (554)
T ss_pred HHhhhhhee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHHH
Confidence 777766554 45667788888777777652 3468999998754
No 250
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=89.47 E-value=2.7 Score=49.91 Aligned_cols=117 Identities=14% Similarity=0.106 Sum_probs=79.2
Q ss_pred CceeecccchHHHHHHHHHHhcC-CCeeEEE-ecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCccCCCCCCcCcHHHHH
Q 004946 443 ERYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDIT 520 (722)
Q Consensus 443 ~R~~d~GIaE~~av~~AaGlA~~-G~~p~~~-t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~d~a 520 (722)
=||+.+ -.|+.++.+|.|.|.. |...+|. ++.+.+..++.- +.++..-+.||+++..........-..+|......
T Consensus 61 i~~i~~-rhE~~Aa~aA~gyar~tgk~gv~~~t~GPG~~n~l~g-l~~A~~d~~Pvl~i~G~~~~~~~~~~~~Qe~d~~~ 138 (616)
T PRK07418 61 LKHILV-RHEQGAAHAADGYARATGKVGVCFGTSGPGATNLVTG-IATAQMDSVPMVVITGQVPRPAIGTDAFQETDIFG 138 (616)
T ss_pred ceEEEe-ccHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHH-HHHHHhcCCCEEEEecCCCccccCCCCcccccHHH
Confidence 378888 8999999999999987 5444433 478888777744 46777889999988643332111112355544456
Q ss_pred HhcCCCCcEEEeeCCHHHHHHHHHHHhhh----CCCCEEEEecCCC
Q 004946 521 FMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (722)
Q Consensus 521 ~~~~iP~l~V~~Psd~~E~~~~l~~a~~~----~~~Pv~ir~~r~~ 562 (722)
+++.+-.+ .....+++++..++..|+.. ..+||+|.+|...
T Consensus 139 ~~~~vtk~-~~~v~~~~~i~~~l~~A~~~A~~~~~GPv~l~iP~Dv 183 (616)
T PRK07418 139 ITLPIVKH-SYVVRDPSDMARIVAEAFHIASSGRPGPVLIDIPKDV 183 (616)
T ss_pred Hhhhccee-EEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEecchhh
Confidence 66655433 24467888888888887763 3489999999754
No 251
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=89.40 E-value=5.4 Score=42.17 Aligned_cols=64 Identities=13% Similarity=0.088 Sum_probs=45.3
Q ss_pred CcCCCcchHHHHHHHHHHHH--H-cCC--C--CeEEEEecCCC--cccchHHHHHHHhhhcCCCEEEEEECCC
Q 004946 190 NAGHGCNSVSAGLGMAVARD--I-KGK--R--ECIVTVISNGT--TMAGQAYEAMSNAGYLDSNMIVILNDSR 253 (722)
Q Consensus 190 ~~G~~G~~ls~A~G~A~A~~--l-~~~--~--~~Vv~viGDGa--~~~G~~~EAln~A~~~~~plivIv~dN~ 253 (722)
..+.-||.++.++-.|+..= . .+. . .+++.++.||. .++|..-+++..|...+..++||+.||.
T Consensus 133 ~f~~~~Tni~~aL~~a~~~f~~~~~~~~s~~~~qlilLISDG~~~~~e~~~~~~~r~a~e~~i~l~~I~ld~~ 205 (266)
T cd01460 133 TFQQDKTDIANLLKFTAQIFEDARTQSSSGSLWQLLLIISDGRGEFSEGAQKVRLREAREQNVFVVFIIIDNP 205 (266)
T ss_pred cCCCCCCcHHHHHHHHHHHHHhhhccccccccccEEEEEECCCcccCccHHHHHHHHHHHcCCeEEEEEEcCC
Confidence 34455677777776665421 1 011 1 28999999999 8888888888888888877777777775
No 252
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=88.74 E-value=5.8 Score=46.57 Aligned_cols=151 Identities=15% Similarity=0.192 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHhcCC--CEEEEecCCCCccch---HHHHHhCCC-ceeecccchHHHHHHHHHHhcCCCee--EEEecHh
Q 004946 405 DCFIEALVMEAEKDK--DIVVVHAGMEMDLSL---QLFQEKFPE-RYFDVGMAEQHAVTFSAGLACGGLKP--FCIIPSA 476 (722)
Q Consensus 405 ~a~~~~L~~~~~~d~--~iv~i~ad~~~~~~l---~~f~~~~p~-R~~d~GIaE~~av~~AaGlA~~G~~p--~~~t~~~ 476 (722)
.-.++.|.+.+++.. .++.+ +|+.-+ +.+. +.++ |++.+ ..|++|+.+|.|.|....+| ++.|+.+
T Consensus 9 ~~~a~~l~~~L~~~GV~~vFgv----pG~~~~~l~~~l~-~~~~i~~v~~-~hE~~A~~aAdgyar~tg~~~v~~vt~Gp 82 (568)
T PRK07449 9 TLWAAVILEELTRLGVRHVVIA----PGSRSTPLTLAAA-EHPRLRLHTH-FDERSAGFLALGLAKASKRPVAVIVTSGT 82 (568)
T ss_pred HHHHHHHHHHHHHcCCCEEEEC----CCCccHHHHHHHH-hCCCcEEEee-cCcccHHHHHHHHHHhhCCCEEEEECCcc
Confidence 344566666666542 34433 333322 3332 2233 77776 89999999999999874443 3446899
Q ss_pred hHHHHHHHHHHHHhcCCCCEEEEEeCCCccCCCCCCcCcHHHHHHhcCCCCcEEEeeCCHH----H-HHHHHHH---Hhh
Q 004946 477 FLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDED----E-LVDMVAT---VAS 548 (722)
Q Consensus 477 Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~d~a~~~~iP~l~V~~Psd~~----E-~~~~l~~---a~~ 548 (722)
.+..++.-+ ..+...+.||+++.........+-..+|......+++.+-...+-.|.... + +..+++. |..
T Consensus 83 G~~N~l~~i-~~A~~~~~Pvl~IsG~~~~~~~~~~~~q~~d~~~~~~~~t~~~v~~~~~~~~~~~~~~~~~~~a~~~a~~ 161 (568)
T PRK07449 83 AVANLYPAV-IEAGLTGVPLIVLTADRPPELRDCGANQAIDQLGLFGSYPFTSLALPEPTQDILAYWLVTTIDAALAAQT 161 (568)
T ss_pred HHHhhhHHH-HHHhhcCCcEEEEECCCCHHHhcCCCCceecHhhHhhhhhhhccCCCCCCchhHHHHHHHHHHHHHHhcC
Confidence 888888554 577788999998864333211111235666667777766544555555511 1 2334444 322
Q ss_pred hCCCCEEEEecCCC
Q 004946 549 IDDRPVCFRYPRGA 562 (722)
Q Consensus 549 ~~~~Pv~ir~~r~~ 562 (722)
...+||+|-+|...
T Consensus 162 ~~~GPV~i~iP~Dv 175 (568)
T PRK07449 162 LQAGPVHINCPFRE 175 (568)
T ss_pred CCCCCEEEeCCCCC
Confidence 35689999998753
No 253
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=88.64 E-value=3.2 Score=49.02 Aligned_cols=114 Identities=17% Similarity=0.185 Sum_probs=76.4
Q ss_pred ceeecccchHHHHHHHHHHhcC-CCeeEE-EecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCc--cCCCCCCcCcHHHH
Q 004946 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDI 519 (722)
Q Consensus 444 R~~d~GIaE~~av~~AaGlA~~-G~~p~~-~t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~d~ 519 (722)
|++.+ ..|++++.+|.|.|.. |...+| .++.+.+..++.- +..+-..+.||+++....+. .+.+ .+|.....
T Consensus 53 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~l~g-l~~A~~~~~Pvl~I~G~~~~~~~~~~--~~q~~d~~ 128 (585)
T CHL00099 53 KHILV-RHEQGAAHAADGYARSTGKVGVCFATSGPGATNLVTG-IATAQMDSVPLLVITGQVGRAFIGTD--AFQEVDIF 128 (585)
T ss_pred eEEEe-cCHHHHHHHHHHHHHhcCCcEEEEECCCCcHHHHHHH-HHHHhhcCCCEEEEecCCCccccCCC--Cccccchh
Confidence 67776 8999999999999987 544443 3478888777744 46777789999988743332 2222 24444333
Q ss_pred HHhcCCCCcEEEeeCCHHHHHHHHHHHhhh----CCCCEEEEecCCC
Q 004946 520 TFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (722)
Q Consensus 520 a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~----~~~Pv~ir~~r~~ 562 (722)
.+++.+-.+ .....++.++..++..|+.. ..+||+|.+|...
T Consensus 129 ~~~~~~tk~-~~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~Dv 174 (585)
T CHL00099 129 GITLPIVKH-SYVVRDARDISRIVAEAFYIAKHGRPGPVLIDIPKDV 174 (585)
T ss_pred hhhcCceeE-EEEeCCHHHHHHHHHHHHHHHccCCCCeEEEecChhh
Confidence 455544332 34556888888888888753 2479999999764
No 254
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=88.45 E-value=8.6 Score=44.87 Aligned_cols=115 Identities=12% Similarity=0.033 Sum_probs=72.1
Q ss_pred ceeecccchHHHHHHHHHHhcC-CCeeEEE-ecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCc--cCCCCCC-cCc--H
Q 004946 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPT-QCG--A 516 (722)
Q Consensus 444 R~~d~GIaE~~av~~AaGlA~~-G~~p~~~-t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~T-H~~--~ 516 (722)
|++.+ -.|++++-+|.|.|.. |...+|. ++.+....+..-+ ..+...+.||+++...... .+.+... ||. .
T Consensus 40 ~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~gi-a~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~ 117 (535)
T TIGR03394 40 PLHTL-SHEPAVGFAADAAARYRGTLGVAAVTYGAGAFNMVNAI-AGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTL 117 (535)
T ss_pred eEEcc-cCcchHHHHHhHHHHhhCCceEEEEecchHHHhhhhHH-HHHhhcCCCEEEEECCCCcccccCCceeEeeccch
Confidence 77775 8999999999999997 5444444 4788887777544 5666789999988633222 2322222 443 2
Q ss_pred H-HHHHhcCCCCcEEEeeCCHHHHHHH----HHHHhhhCCCCEEEEecCCC
Q 004946 517 F-DITFMSCLPNMIVMAPSDEDELVDM----VATVASIDDRPVCFRYPRGA 562 (722)
Q Consensus 517 ~-d~a~~~~iP~l~V~~Psd~~E~~~~----l~~a~~~~~~Pv~ir~~r~~ 562 (722)
. ...+++.+-.+. ....++.++... ++.|+. ..+||+|-+|+..
T Consensus 118 ~~~~~~~~~vtk~~-~~v~~~~~~~~~~~~A~~~a~~-~~gPv~i~iP~Dv 166 (535)
T TIGR03394 118 DSQFQVFKEVTCDQ-AVLDDPATAPAEIARVLGSARE-LSRPVYLEIPRDM 166 (535)
T ss_pred HHHHHhhhhheEEE-EEeCChHHhHHHHHHHHHHHHH-CCCCEEEEechhh
Confidence 2 235666543332 233445554444 444444 5689999999864
No 255
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=88.19 E-value=6.5 Score=44.52 Aligned_cols=115 Identities=15% Similarity=0.109 Sum_probs=72.2
Q ss_pred ceeecccchHHHHHHHHHHhcC-CCeeEE-EecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCc--cCCCCCCcCcHHHH
Q 004946 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDI 519 (722)
Q Consensus 444 R~~d~GIaE~~av~~AaGlA~~-G~~p~~-~t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~d~ 519 (722)
+++.+ ..|+++..+|-|.|.. |...+| .|+.+....++--+ ..+...+.||+++...... .+. ..+|.....
T Consensus 40 ~~v~~-~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~l~gl-~~A~~~~~Pvl~i~g~~~~~~~~~--~~~q~~d~~ 115 (432)
T TIGR00173 40 RVHVH-IDERSAGFFALGLAKASGRPVAVVCTSGTAVANLLPAV-IEASYSGVPLIVLTADRPPELRGC--GANQTIDQP 115 (432)
T ss_pred EEEEe-cCCccHHHHHHHHHhccCCCEEEEECCcchHhhhhHHH-HHhcccCCcEEEEeCCCCHHHhCC--CCCcccchh
Confidence 77766 9999999999999998 533333 35888877777544 5666789999988643222 232 235555566
Q ss_pred HHhcCCCCcEEE--eeCCH---HHHHHHHHHHhh----hCCCCEEEEecCCC
Q 004946 520 TFMSCLPNMIVM--APSDE---DELVDMVATVAS----IDDRPVCFRYPRGA 562 (722)
Q Consensus 520 a~~~~iP~l~V~--~Psd~---~E~~~~l~~a~~----~~~~Pv~ir~~r~~ 562 (722)
.+++.+-.+..- .|.+. .++..+++.|+. -..+||+|-+|...
T Consensus 116 ~~~~~~tk~~~~v~~~~~~~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv 167 (432)
T TIGR00173 116 GLFGSYVRWSLDLPLPEADEPLAYLRSTVDRAVAQAQGPPPGPVHINVPFRE 167 (432)
T ss_pred hHHhhccceeeeCCCCCccccHHHHHHHHHHHHHHhhCCCCCCEEEeCCCCC
Confidence 777765544332 33331 014444444443 24579999998654
No 256
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=87.25 E-value=2.9 Score=41.03 Aligned_cols=115 Identities=17% Similarity=0.229 Sum_probs=63.3
Q ss_pred hCCCceeecccch-HHHHHHHHHHhcCC-CeeEEEe--cHhhHHHHHHHHHHHHhcCCCCEEEEEe-CCCcc--C-----
Q 004946 440 KFPERYFDVGMAE-QHAVTFSAGLACGG-LKPFCII--PSAFLQRAYDQVVNDVDQQRLPVRFVIT-SAGLV--G----- 507 (722)
Q Consensus 440 ~~p~R~~d~GIaE-~~av~~AaGlA~~G-~~p~~~t--~~~Fl~ra~dqi~~~~a~~~lpVv~v~~-~~G~~--G----- 507 (722)
..|.+|+..+-.= -..+..|.|++++- -++++++ -..|+.-. +-+..+...++|+++++- ..++. .
T Consensus 38 ~~~~~~~~~~~g~mG~~lp~aiGaala~~~~~vv~i~GDG~f~~~~--~el~ta~~~~~p~~~iV~nN~~~~~~~~~~~~ 115 (178)
T cd02002 38 TRPGSYFTLRGGGLGWGLPAAVGAALANPDRKVVAIIGDGSFMYTI--QALWTAARYGLPVTVVILNNRGYGALRSFLKR 115 (178)
T ss_pred CCCCCeeccCCccccchHHHHHHHHhcCCCCeEEEEEcCchhhccH--HHHHHHHHhCCCeEEEEEcCccHHHHHHHHHH
Confidence 3577888653211 11345677776652 3455555 35565332 223456677999888764 43321 0
Q ss_pred --CC--------CC-CcCcHHHHH-HhcCCCCcEEEeeCCHHHHHHHHHHHhhhCCCCEEEEe
Q 004946 508 --SD--------GP-TQCGAFDIT-FMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRY 558 (722)
Q Consensus 508 --~d--------G~-TH~~~~d~a-~~~~iP~l~V~~Psd~~E~~~~l~~a~~~~~~Pv~ir~ 558 (722)
.+ +. ......|+. +...+ |+..+.-.++.|+...++++++ .++|++|-.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~-~~~p~vi~v 176 (178)
T cd02002 116 VGPEGPGENAPDGLDLLDPGIDFAAIAKAF-GVEAERVETPEELDEALREALA-EGGPALIEV 176 (178)
T ss_pred HcCCCcccccccccccCCCCCCHHHHHHHc-CCceEEeCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 00 00 000112222 22322 5566677889999999999986 678988743
No 257
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=86.89 E-value=7.7 Score=38.86 Aligned_cols=101 Identities=7% Similarity=0.104 Sum_probs=56.7
Q ss_pred HHHHHHHHhcC-CCeeEEEec--HhhHHHHHHHHHHHHhcCCCCEEEEE-eCCCccCCCCCCc--------------Cc-
Q 004946 455 AVTFSAGLACG-GLKPFCIIP--SAFLQRAYDQVVNDVDQQRLPVRFVI-TSAGLVGSDGPTQ--------------CG- 515 (722)
Q Consensus 455 av~~AaGlA~~-G~~p~~~t~--~~Fl~ra~dqi~~~~a~~~lpVv~v~-~~~G~~G~dG~TH--------------~~- 515 (722)
.+..|.|++++ .-|+++++. ..|++.....+ ..+...++||++++ ++.++ |.-+... ++
T Consensus 56 glpaAiGa~la~p~r~Vv~i~GDGs~f~m~~~eL-~ta~~~~lpv~iiVlnN~~y-g~~~~~~~~~~~~~~~~~~~~~~~ 133 (193)
T cd03375 56 ALAVATGVKLANPDLTVIVVSGDGDLAAIGGNHF-IHAARRNIDITVIVHNNQIY-GLTKGQASPTTPEGFKTKTTPYGN 133 (193)
T ss_pred HHHHHHHHHHhCCCCeEEEEeccchHhhccHHHH-HHHHHhCCCeEEEEEcCccc-ccCCCccCCCCCCCCcccCCCCCC
Confidence 34467776665 356677664 44444434333 45567899988766 44443 2111000 00
Q ss_pred ---HHHH-HHhcC--CCCcEEEeeCCHHHHHHHHHHHhhhCCCCEEEEe
Q 004946 516 ---AFDI-TFMSC--LPNMIVMAPSDEDELVDMVATVASIDDRPVCFRY 558 (722)
Q Consensus 516 ---~~d~-a~~~~--iP~l~V~~Psd~~E~~~~l~~a~~~~~~Pv~ir~ 558 (722)
..|+ .+... .+........++.|+...+++|++ .++|++|-.
T Consensus 134 ~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~al~-~~gp~vIev 181 (193)
T cd03375 134 IEEPFNPLALALAAGATFVARGFSGDIKQLKEIIKKAIQ-HKGFSFVEV 181 (193)
T ss_pred CCCCCCHHHHHHHCCCCEEEEEecCCHHHHHHHHHHHHh-cCCCEEEEE
Confidence 0122 22222 222222468999999999999986 688998854
No 258
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=86.79 E-value=2.5 Score=40.70 Aligned_cols=100 Identities=18% Similarity=0.197 Sum_probs=58.6
Q ss_pred HHHHHHHHhcCC--CeeEEEe-cHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCccCCCCC------------CcCcHHHH
Q 004946 455 AVTFSAGLACGG--LKPFCII-PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGP------------TQCGAFDI 519 (722)
Q Consensus 455 av~~AaGlA~~G--~~p~~~t-~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~------------TH~~~~d~ 519 (722)
.++.|.|+++.. .+.++-+ -..|+. .+ |-+..+...++|+++++...+..+..+. ......|+
T Consensus 51 ~~~~a~Gaa~a~~~~~vv~~~GDG~~~~-~~-~~l~ta~~~~~~~~~iv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 128 (168)
T cd00568 51 GLPAAIGAALAAPDRPVVCIAGDGGFMM-TG-QELATAVRYGLPVIVVVFNNGGYGTIRMHQEAFYGGRVSGTDLSNPDF 128 (168)
T ss_pred hHHHHHHHHHhCCCCcEEEEEcCcHHhc-cH-HHHHHHHHcCCCcEEEEEECCccHHHHHHHHHHcCCCcccccCCCCCH
Confidence 445677777664 3444444 455554 44 3345667789998887744432221010 11111232
Q ss_pred -HHhcCCCCcEEEeeCCHHHHHHHHHHHhhhCCCCEEEEe
Q 004946 520 -TFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRY 558 (722)
Q Consensus 520 -a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~~~~Pv~ir~ 558 (722)
.+... -|+......++.|+...++++.+ .++|++|..
T Consensus 129 ~~~a~~-~G~~~~~v~~~~~l~~a~~~a~~-~~~p~~i~v 166 (168)
T cd00568 129 AALAEA-YGAKGVRVEDPEDLEAALAEALA-AGGPALIEV 166 (168)
T ss_pred HHHHHH-CCCeEEEECCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 23333 36777788889999999999975 688998854
No 259
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=86.61 E-value=8.2 Score=41.64 Aligned_cols=102 Identities=12% Similarity=0.223 Sum_probs=59.6
Q ss_pred HHHHHHHHhcC-CCeeEEEec--HhhHHHHHHHHHHHHhcCCCCEEEEEeCCCccCCCC----CCc----------C---
Q 004946 455 AVTFSAGLACG-GLKPFCIIP--SAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDG----PTQ----------C--- 514 (722)
Q Consensus 455 av~~AaGlA~~-G~~p~~~t~--~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG----~TH----------~--- 514 (722)
++.+|.|++++ .-++++++. .+|+......+. .++..++|+++++-..+..|.-+ +|. .
T Consensus 75 alpaAiGaklA~pd~~VV~i~GDG~~~~mg~~eL~-tA~r~nl~i~vIV~NN~~YG~t~gQ~s~t~~~g~~~~~~~~g~~ 153 (301)
T PRK05778 75 AIAFATGAKLANPDLEVIVVGGDGDLASIGGGHFI-HAGRRNIDITVIVENNGIYGLTKGQASPTTPEGSKTKTAPYGNI 153 (301)
T ss_pred HHHHHHHHHHHCCCCcEEEEeCccHHHhccHHHHH-HHHHHCCCcEEEEEeCchhhcccCcccCCcCCCcccccccCCCc
Confidence 55677777776 345666664 555444454443 56788999877774333222111 110 0
Q ss_pred -cHHHHHHhcCCCCcEEE---eeCCHHHHHHHHHHHhhhCCCCEEEEe
Q 004946 515 -GAFDITFMSCLPNMIVM---APSDEDELVDMVATVASIDDRPVCFRY 558 (722)
Q Consensus 515 -~~~d~a~~~~iP~l~V~---~Psd~~E~~~~l~~a~~~~~~Pv~ir~ 558 (722)
...|+..++.--|...+ ...++.|+..+++.|+. .++|++|-.
T Consensus 154 ~~~~d~~~lA~a~G~~~va~~~v~~~~eL~~ai~~A~~-~~GpalIeV 200 (301)
T PRK05778 154 EPPIDPCALALAAGATFVARSFAGDVKQLVELIKKAIS-HKGFAFIDV 200 (301)
T ss_pred CCCCCHHHHHHHCCCCEEEEeccCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 11233333222344433 68999999999999986 688998854
No 260
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=86.48 E-value=15 Score=43.24 Aligned_cols=116 Identities=16% Similarity=0.113 Sum_probs=78.5
Q ss_pred ceeecccchHHHHHHHHHHhcCCCe-eEEE-ecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCc--cCCC----C--CCc
Q 004946 444 RYFDVGMAEQHAVTFSAGLACGGLK-PFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSD----G--PTQ 513 (722)
Q Consensus 444 R~~d~GIaE~~av~~AaGlA~~G~~-p~~~-t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~d----G--~TH 513 (722)
|++.+ -.|++++.+|-|.|....+ .+|. ++.+.+..+..-+ ..+...+.||+++...... .+.+ - ..+
T Consensus 52 ~~V~~-rhE~~A~~~Adgyar~tgk~gv~~~t~GPG~~N~~~gl-a~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~ 129 (569)
T PRK08327 52 EFVIC-PHEIVAISMAHGYALVTGKPQAVMVHVDVGTANALGGV-HNAARSRIPVLVFAGRSPYTEEGELGSRNTRIHWT 129 (569)
T ss_pred cEEec-CCHHHHHHHHHHHHHhhCCCeEEEEecCHHHHHHHHHH-HHHhhcCCCEEEEeccCCccccccccccccCcccc
Confidence 78877 8899999999999998444 3333 4888888877544 5667789999988643221 1111 0 123
Q ss_pred Cc-HHHHHHhcCCCCcEEEeeCCHHHHHHHHHHHhhh----CCCCEEEEecCCC
Q 004946 514 CG-AFDITFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (722)
Q Consensus 514 ~~-~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~----~~~Pv~ir~~r~~ 562 (722)
|. .....+++.+-.+ .+...++.++...+..|+.. ..+||+|.+|...
T Consensus 130 qe~~d~~~~~~~vtk~-~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~i~iP~Dv 182 (569)
T PRK08327 130 QEMRDQGGLVREYVKW-DYEIRRGDQIGEVVARAIQIAMSEPKGPVYLTLPREV 182 (569)
T ss_pred hhhhhHHHHHhhhhhh-hcccCCHHHHHHHHHHHHHHHhcCCCCCEEEECcHHH
Confidence 44 3555666755443 45677888888888887763 3579999998653
No 261
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=86.15 E-value=13 Score=37.00 Aligned_cols=111 Identities=17% Similarity=0.219 Sum_probs=60.6
Q ss_pred CCceeecccchHHHHHHHHHHhcCC-CeeEEEec--HhhHHHHHHHHHHHHhcCCC-CEEEEE-eCCCccCCCC--CCcC
Q 004946 442 PERYFDVGMAEQHAVTFSAGLACGG-LKPFCIIP--SAFLQRAYDQVVNDVDQQRL-PVRFVI-TSAGLVGSDG--PTQC 514 (722)
Q Consensus 442 p~R~~d~GIaE~~av~~AaGlA~~G-~~p~~~t~--~~Fl~ra~dqi~~~~a~~~l-pVv~v~-~~~G~~G~dG--~TH~ 514 (722)
|.+|+..|-- -.++..|.|++++. -++++++. ..|+.- . |-+..++..++ |+++++ ++.|+ |..+ .+..
T Consensus 41 ~~~~~~~g~m-G~~lpaAiGaala~p~~~Vv~i~GDG~f~m~-~-~eL~ta~~~~l~~i~ivV~NN~~y-g~~~~~~~~~ 116 (188)
T cd03371 41 AQDFLTVGSM-GHASQIALGIALARPDRKVVCIDGDGAALMH-M-GGLATIGGLAPANLIHIVLNNGAH-DSVGGQPTVS 116 (188)
T ss_pred cCceeecCcc-ccHHHHHHHHHHhCCCCcEEEEeCCcHHHhh-c-cHHHHHHHcCCCCcEEEEEeCchh-hccCCcCCCC
Confidence 4788865221 12456677777653 45666653 555432 2 22345566665 554444 55553 2111 1111
Q ss_pred cHHHH-HHhcCCCCcEE-EeeCCHHHHHHHHHHHhhhCCCCEEEEe
Q 004946 515 GAFDI-TFMSCLPNMIV-MAPSDEDELVDMVATVASIDDRPVCFRY 558 (722)
Q Consensus 515 ~~~d~-a~~~~iP~l~V-~~Psd~~E~~~~l~~a~~~~~~Pv~ir~ 558 (722)
...|. .+...+ |+.- ....++.|+...++++++ .++|++|..
T Consensus 117 ~~~d~~~~A~a~-G~~~~~~v~~~~el~~al~~a~~-~~~p~lIev 160 (188)
T cd03371 117 FDVSLPAIAKAC-GYRAVYEVPSLEELVAALAKALA-ADGPAFIEV 160 (188)
T ss_pred CCCCHHHHHHHc-CCceEEecCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 11222 223332 4543 456799999999999986 578999754
No 262
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=86.06 E-value=8.1 Score=41.21 Aligned_cols=148 Identities=9% Similarity=0.124 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEecCCCCccchHHHHHhCCCceeecccchHHHHHHHHHHhcCC-CeeEEEec--HhhHH
Q 004946 403 YDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGG-LKPFCIIP--SAFLQ 479 (722)
Q Consensus 403 ~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f~~~~p~R~~d~GIaE~~av~~AaGlA~~G-~~p~~~t~--~~Fl~ 479 (722)
...++.+++.++.-..++.+++ .|.+.+..+..+.+ +.. +.+. =..++.+|.|+.++. -++++++. ..|+.
T Consensus 19 i~~~~~~a~~~l~~~p~d~ivv-sdiG~~~~~~~~~~--~~~-~~~~--mG~alp~AiGaklA~pd~~VVai~GDG~~~~ 92 (280)
T PRK11869 19 IRNALMKALSELNLKPRQVVIV-SGIGQAAKMPHYIN--VNG-FHTL--HGRAIPAATAVKATNPELTVIAEGGDGDMYA 92 (280)
T ss_pred HHHHHHHHHHHcCCCCCCEEEE-eCchHhhhHHHHcc--CCC-CCcc--cccHHHHHHHHHHHCCCCcEEEEECchHHhh
Confidence 3466777776553333455444 45554332222211 111 1111 122566777777765 46777764 44554
Q ss_pred HHHHHHHHHHhcCCCCEEEEE-eCCCc--cC-CCCCC--------------cCcHHHHHHhcCCCCcEEEe---eCCHHH
Q 004946 480 RAYDQVVNDVDQQRLPVRFVI-TSAGL--VG-SDGPT--------------QCGAFDITFMSCLPNMIVMA---PSDEDE 538 (722)
Q Consensus 480 ra~dqi~~~~a~~~lpVv~v~-~~~G~--~G-~dG~T--------------H~~~~d~a~~~~iP~l~V~~---Psd~~E 538 (722)
-++..+ ..++..++||++++ ++.++ ++ ...++ -....|+.-++.--|...++ +.++.|
T Consensus 93 iG~~eL-~tA~r~nl~i~~IV~NN~~Yg~t~~Q~s~~t~~g~~~~~~p~g~~~~~~D~~~lA~a~G~~~va~~~~~~~~~ 171 (280)
T PRK11869 93 EGGNHL-IHAIRRNPDITVLVHNNQVYGLTKGQASPTTLKGFKTPTQPWGVFEEPFNPIALAIALDASFVARTFSGDIEE 171 (280)
T ss_pred CcHHHH-HHHHHhCcCcEEEEEECHHHhhhcceecCCCCCCcccccCCCCccCCCCCHHHHHHHCCCCEEEEeCCCCHHH
Confidence 435344 46678899988877 33322 21 11000 00111222222222444444 999999
Q ss_pred HHHHHHHHhhhCCCCEEEEe
Q 004946 539 LVDMVATVASIDDRPVCFRY 558 (722)
Q Consensus 539 ~~~~l~~a~~~~~~Pv~ir~ 558 (722)
+...++.|++ .++|++|-.
T Consensus 172 l~~~i~~Al~-~~Gp~lIeV 190 (280)
T PRK11869 172 TKEILKEAIK-HKGLAIVDI 190 (280)
T ss_pred HHHHHHHHHh-CCCCEEEEE
Confidence 9999999987 688998854
No 263
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=85.97 E-value=4.4 Score=44.48 Aligned_cols=109 Identities=18% Similarity=0.160 Sum_probs=67.6
Q ss_pred ecccchHHHHHHHHHHhcCC-Ce-eEEEecHhhH--HHHHHHHHHHHhcCCCCEEEEEeCCCc-cCCCCCCc-CcHHHH-
Q 004946 447 DVGMAEQHAVTFSAGLACGG-LK-PFCIIPSAFL--QRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQ-CGAFDI- 519 (722)
Q Consensus 447 d~GIaE~~av~~AaGlA~~G-~~-p~~~t~~~Fl--~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH-~~~~d~- 519 (722)
-+|-.=-+++|+|.++-+.| .. ..+++|.+.. |-.+-.-+|.++..+|||+|++-+.+. .+ -|.. |...++
T Consensus 137 iVg~Q~~~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG~FhEalN~A~v~klPvvf~ieNN~yAiS--vp~~~q~~~~~~ 214 (358)
T COG1071 137 IVGTQIPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEALNFAAVWKLPVVFVIENNQYAIS--VPRSRQTAAEII 214 (358)
T ss_pred eecccccHHHHHHHHHHHhCCCCcEEEEEecCCccccchHHHHHHHHHHhcCCEEEEEecCCceee--cchhhcccchhH
Confidence 33333345666666666667 33 4444455543 333334568999999999999976654 22 1222 332222
Q ss_pred ---HHhcCCCCcEEEeeCCHHHHHHHHHHHhhh---CCCCEEEEe
Q 004946 520 ---TFMSCLPNMIVMAPSDEDELVDMVATVASI---DDRPVCFRY 558 (722)
Q Consensus 520 ---a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~---~~~Pv~ir~ 558 (722)
+..-.||++.| .=.|...++...++|.++ .++|++|..
T Consensus 215 ~~ra~aygipgv~V-DG~D~~avy~~~~~A~e~AR~g~GPtLIE~ 258 (358)
T COG1071 215 AARAAAYGIPGVRV-DGNDVLAVYEAAKEAVERARAGEGPTLIEA 258 (358)
T ss_pred HhhhhccCCCeEEE-CCcCHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 23336999988 778888888888888764 457999854
No 264
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=85.84 E-value=6.1 Score=41.40 Aligned_cols=102 Identities=13% Similarity=0.264 Sum_probs=62.9
Q ss_pred HHHHHHHHhcC------CCeeEEEe-cHhhHH-HHHHHHHHHHhcCCCC-EEEEEeCCCccCCCCCCcC--cHHHH-HHh
Q 004946 455 AVTFSAGLACG------GLKPFCII-PSAFLQ-RAYDQVVNDVDQQRLP-VRFVITSAGLVGSDGPTQC--GAFDI-TFM 522 (722)
Q Consensus 455 av~~AaGlA~~------G~~p~~~t-~~~Fl~-ra~dqi~~~~a~~~lp-Vv~v~~~~G~~G~dG~TH~--~~~d~-a~~ 522 (722)
.+++|.|+|++ ..+.+|-+ -..|.. ..++. +..++..++| ++++++..++ +.+++++. ...|+ ..+
T Consensus 110 gl~~avG~Ala~~~~~~~~~v~~i~GDG~~~~G~~~ea-l~~a~~~~l~~li~vvdnN~~-~~~~~~~~~~~~~~~~~~~ 187 (255)
T cd02012 110 GLSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEA-ASFAGHYKLDNLIAIVDSNRI-QIDGPTDDILFTEDLAKKF 187 (255)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEECcccccccHHHHH-HHHHHHcCCCcEEEEEECCCc-cccCcHhhccCchhHHHHH
Confidence 44566666664 44555554 344432 23433 3567788997 6777777664 44455432 22333 344
Q ss_pred cCCCCcEEEeeC--CHHHHHHHHHHHhhhCCCCEEEEec
Q 004946 523 SCLPNMIVMAPS--DEDELVDMVATVASIDDRPVCFRYP 559 (722)
Q Consensus 523 ~~iP~l~V~~Ps--d~~E~~~~l~~a~~~~~~Pv~ir~~ 559 (722)
+.+ |+.++.-. |..++...++.+.+..++|++|...
T Consensus 188 ~a~-G~~~~~v~G~d~~~l~~al~~a~~~~~~P~~I~~~ 225 (255)
T cd02012 188 EAF-GWNVIEVDGHDVEEILAALEEAKKSKGKPTLIIAK 225 (255)
T ss_pred HHc-CCeEEEECCCCHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 443 88887777 9999999999987644789988654
No 265
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=85.68 E-value=8.5 Score=38.71 Aligned_cols=98 Identities=10% Similarity=0.171 Sum_probs=57.7
Q ss_pred HHHHHHHHhcC----C-CeeEEEecHhh-HH--HHHHHHHHHHhcCCCCEEEEEeCCCccCCCCCCcCcHHHHHHhcCCC
Q 004946 455 AVTFSAGLACG----G-LKPFCIIPSAF-LQ--RAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLP 526 (722)
Q Consensus 455 av~~AaGlA~~----G-~~p~~~t~~~F-l~--ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~d~a~~~~iP 526 (722)
.+++|.|+|++ | -++++++..+. ++ ..++. ++.++..++|+++++++.+. +.+++|. ...+ .++. -
T Consensus 80 gl~~A~G~Ala~k~~~~~~~vv~~~GDG~~~eG~~~Ea-l~~A~~~~~~li~vvdnN~~-~~~~~~~-~~~~--~~~a-~ 153 (195)
T cd02007 80 SISAALGMAVARDLKGKKRKVIAVIGDGALTGGMAFEA-LNNAGYLKSNMIVILNDNEM-SISPNVG-TPGN--LFEE-L 153 (195)
T ss_pred hHHHHHHHHHHHHHhCCCCeEEEEEcccccccChHHHH-HHHHHHhCCCEEEEEECCCc-ccCCCCC-CHHH--HHHh-c
Confidence 34556666554 3 24455554333 22 33333 35666679999999988775 3445543 2222 2333 2
Q ss_pred CcEE---EeeCCHHHHHHHHHHHhhhCCCCEEEEec
Q 004946 527 NMIV---MAPSDEDELVDMVATVASIDDRPVCFRYP 559 (722)
Q Consensus 527 ~l~V---~~Psd~~E~~~~l~~a~~~~~~Pv~ir~~ 559 (722)
++.+ +...|.+++...++.+.+ .++|++|...
T Consensus 154 G~~~~~~vdG~d~~~l~~a~~~a~~-~~~P~~I~~~ 188 (195)
T cd02007 154 GFRYIGPVDGHNIEALIKVLKEVKD-LKGPVLLHVV 188 (195)
T ss_pred CCCccceECCCCHHHHHHHHHHHHh-CCCCEEEEEE
Confidence 4443 455688899999888865 5789998653
No 266
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=85.29 E-value=17 Score=42.76 Aligned_cols=117 Identities=12% Similarity=0.080 Sum_probs=80.7
Q ss_pred CceeecccchHHHHHHHHHHhcC-CCeeEEE-ecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCc--cCCCCCCcCcHHH
Q 004946 443 ERYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFD 518 (722)
Q Consensus 443 ~R~~d~GIaE~~av~~AaGlA~~-G~~p~~~-t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~d 518 (722)
=|++.+ -.|++|+.+|.|.|.. |...+|. ++.+.+..+..-+ ..+...+.||+++...... .+..-.++|....
T Consensus 48 i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~l~gl-~~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~ 125 (569)
T PRK09259 48 IRYIGF-RHEQSAGNAAAAAGFLTQKPGVCLTVSAPGFLNGLTAL-ANATTNCFPMIMISGSSEREIVDLQQGDYEELDQ 125 (569)
T ss_pred CCEEee-CCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHHHHHH-HHHHhcCCCEEEEEccCCcccccccCCCccccch
Confidence 377777 8999999999999997 5444444 4788887777544 6777889999988633221 1111124666666
Q ss_pred HHHhcCCCCcEEEeeCCHHHHHHHHHHHhhh----CCCCEEEEecCCC
Q 004946 519 ITFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (722)
Q Consensus 519 ~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~----~~~Pv~ir~~r~~ 562 (722)
..+++.+-.+ .+...++.++...+..|+.. ..+||+|-+|+..
T Consensus 126 ~~~~~~~tk~-s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv 172 (569)
T PRK09259 126 LNAAKPFCKA-AFRVNRAEDIGIGVARAIRTAVSGRPGGVYLDLPAKV 172 (569)
T ss_pred hhhhhhheee-eEEcCCHHHHHHHHHHHHHHhhhCCCCcEEEEeCHHH
Confidence 6777766554 35556888888888877763 3578999998764
No 267
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=84.61 E-value=13 Score=39.77 Aligned_cols=145 Identities=14% Similarity=0.201 Sum_probs=75.5
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEecCCCCccchHHHHHhCCCceeecc-c--chHHHHHHHHHHhcCC-CeeEEEec--Hh
Q 004946 403 YDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVG-M--AEQHAVTFSAGLACGG-LKPFCIIP--SA 476 (722)
Q Consensus 403 ~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f~~~~p~R~~d~G-I--aE~~av~~AaGlA~~G-~~p~~~t~--~~ 476 (722)
...++.++|.++....++.+++ .|+|-+... | +|++.+ + .=..++.+|.|++++. -++++++. .+
T Consensus 28 il~~l~~al~~l~~~p~d~vvv-sdiGc~~~~-------~-~~~~~~~~~g~mG~alpaAiGaklA~Pd~~VV~i~GDG~ 98 (286)
T PRK11867 28 ILAALQRALAELGLDPENVAVV-SGIGCSGRL-------P-GYINTYGFHTIHGRALAIATGLKLANPDLTVIVVTGDGD 98 (286)
T ss_pred HHHHHHHHHHHhCCCCCcEEEE-eCCcccccc-------C-ccccccchhhhhhcHHHHHHHHHHhCCCCcEEEEeCccH
Confidence 3445556655544334454444 466644321 1 344332 1 1133556777777663 45566654 43
Q ss_pred hHHHHHHHHHHHHhcCCCCEEEEEeCCCccC----CCCC----------CcCcH----HHH-HHhcCC--CCcEEEeeCC
Q 004946 477 FLQRAYDQVVNDVDQQRLPVRFVITSAGLVG----SDGP----------TQCGA----FDI-TFMSCL--PNMIVMAPSD 535 (722)
Q Consensus 477 Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G----~dG~----------TH~~~----~d~-a~~~~i--P~l~V~~Psd 535 (722)
+++-....+ ..++..++|+++++-..+.+| ...+ +..+. .|. ++.... ..+......+
T Consensus 99 ~f~mg~~eL-~tA~r~nl~i~vIV~NN~~yGmt~~q~s~tt~~g~~~~~~~~g~~~~~~d~~~lA~a~Ga~~va~~~~~~ 177 (286)
T PRK11867 99 ALAIGGNHF-IHALRRNIDITYILFNNQIYGLTKGQYSPTSPVGFVTKTTPYGSIEPPFNPVELALGAGATFVARGFDSD 177 (286)
T ss_pred HHhCCHHHH-HHHHHhCCCcEEEEEeCHHHhhhcCccCCCCCCCcccccccCCCCCCCCCHHHHHHHCCCcEEEEecCCC
Confidence 344444344 356778999877774332222 1111 00111 222 222222 2222335789
Q ss_pred HHHHHHHHHHHhhhCCCCEEEEe
Q 004946 536 EDELVDMVATVASIDDRPVCFRY 558 (722)
Q Consensus 536 ~~E~~~~l~~a~~~~~~Pv~ir~ 558 (722)
++|+..+++.|++ .++|++|-.
T Consensus 178 ~~el~~al~~Al~-~~Gp~lIev 199 (286)
T PRK11867 178 VKQLTELIKAAIN-HKGFSFVEI 199 (286)
T ss_pred HHHHHHHHHHHHh-CCCCEEEEE
Confidence 9999999999986 588998854
No 268
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=84.11 E-value=6.5 Score=37.17 Aligned_cols=54 Identities=20% Similarity=0.276 Sum_probs=36.5
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCeEEEEe-cCCCcccchHHHHHHHhhhcCCCEEEEEECCCC
Q 004946 193 HGCNSVSAGLGMAVARDIKGKRECIVTVI-SNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRH 254 (722)
Q Consensus 193 ~~G~~ls~A~G~A~A~~l~~~~~~Vv~vi-GDGa~~~G~~~EAln~A~~~~~plivIv~dN~~ 254 (722)
|-..+..+|.|++.+ +. ..++.+. |-|.. ...+++..|...+.|+++|..+.+.
T Consensus 43 ~E~~a~~~A~G~a~~----~~-~~v~~~~~gpg~~---~~~~~l~~a~~~~~Pvl~i~~~~~~ 97 (154)
T cd06586 43 HELGAAGAAAGYARA----GG-PPVVIVTSGTGLL---NAINGLADAAAEHLPVVFLIGARGI 97 (154)
T ss_pred CHHHHHHHHHHHHHh----hC-CEEEEEcCCCcHH---HHHHHHHHHHhcCCCEEEEeCCCCh
Confidence 334456677777765 33 4444444 77765 4678888888888999999876654
No 269
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=83.88 E-value=14 Score=36.28 Aligned_cols=100 Identities=13% Similarity=0.179 Sum_probs=51.9
Q ss_pred HHHHHHHhcCC-CeeEEEe--cHhhHHHHHHHHHHHHhcCCCCEEEEE-eCCCccCCCCCC-----------cCcHHHHH
Q 004946 456 VTFSAGLACGG-LKPFCII--PSAFLQRAYDQVVNDVDQQRLPVRFVI-TSAGLVGSDGPT-----------QCGAFDIT 520 (722)
Q Consensus 456 v~~AaGlA~~G-~~p~~~t--~~~Fl~ra~dqi~~~~a~~~lpVv~v~-~~~G~~G~dG~T-----------H~~~~d~a 520 (722)
++.|.|++++. -++++++ -..|+.-++..+ ..+...++|+++++ ++.++ |..+.. .....|+.
T Consensus 57 l~~AiGa~la~p~~~Vv~i~GDG~f~~~g~~eL-~ta~~~~l~i~vvV~nN~~~-g~~~~~~~~~~~~~~~~~~~~~d~~ 134 (178)
T cd02008 57 IGVAIGMAKASEDKKVVAVIGDSTFFHSGILGL-INAVYNKANITVVILDNRTT-AMTGGQPHPGTGKTLTEPTTVIDIE 134 (178)
T ss_pred HHHHhhHHhhCCCCCEEEEecChHHhhccHHHH-HHHHHcCCCEEEEEECCcce-eccCCCCCCCCcccccCCCCccCHH
Confidence 34566666653 4566665 466654433333 45677899987766 44443 211110 01112222
Q ss_pred -HhcC--CCCcEEEeeCCHHHHHHHHHHHhhhCCCCEEEEe
Q 004946 521 -FMSC--LPNMIVMAPSDEDELVDMVATVASIDDRPVCFRY 558 (722)
Q Consensus 521 -~~~~--iP~l~V~~Psd~~E~~~~l~~a~~~~~~Pv~ir~ 558 (722)
+.+. +....|..|.+-+++...++.|++ .++|.+|..
T Consensus 135 ~~a~a~G~~~~~v~~~~~l~~~~~al~~a~~-~~gp~lI~v 174 (178)
T cd02008 135 ALVRAIGVKRVVVVDPYDLKAIREELKEALA-VPGVSVIIA 174 (178)
T ss_pred HHHHHCCCCEEEecCccCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 2222 233344444455555578888875 688998854
No 270
>PRK06154 hypothetical protein; Provisional
Probab=83.22 E-value=9.4 Score=44.88 Aligned_cols=147 Identities=12% Similarity=0.125 Sum_probs=80.7
Q ss_pred HHHHHHHHHhcCCCEEEEecCCCCccc--hHHHHHhCCCceeeccc--chHHHHHHHHHHhcC-CCeeEEEec--HhhHH
Q 004946 407 FIEALVMEAEKDKDIVVVHAGMEMDLS--LQLFQEKFPERYFDVGM--AEQHAVTFSAGLACG-GLKPFCIIP--SAFLQ 479 (722)
Q Consensus 407 ~~~~L~~~~~~d~~iv~i~ad~~~~~~--l~~f~~~~p~R~~d~GI--aE~~av~~AaGlA~~-G~~p~~~t~--~~Fl~ 479 (722)
+.+.|.+.+..+ +.+ +..|.+.... ...+.-..|.+|+..+- +=-..+..|.|++++ .-++++++. ..|++
T Consensus 386 ~~~~l~~~l~~~-d~i-v~~D~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~la~p~r~Vv~i~GDG~f~m 463 (565)
T PRK06154 386 VVWELQHAVDIK-TVI-ITHDAGSPRDQLSPFYVASRPGSYLGWGKTTQLGYGLGLAMGAKLARPDALVINLWGDAAFGM 463 (565)
T ss_pred HHHHHHHhcCCC-CEE-EEECCcccHHHHHHhCCCCCCCeEEccCCCcccccHHHHHHHHHHhCCCCcEEEEEcchHHhc
Confidence 444555544322 333 3335443221 12333345788887532 112245566666665 246666664 55655
Q ss_pred HHHHHHHHHHhcCCCCEEEEEeCCCccCC-C------CCCcCcH---HHHH-HhcCCCCcEEEeeCCHHHHHHHHHHHhh
Q 004946 480 RAYDQVVNDVDQQRLPVRFVITSAGLVGS-D------GPTQCGA---FDIT-FMSCLPNMIVMAPSDEDELVDMVATVAS 548 (722)
Q Consensus 480 ra~dqi~~~~a~~~lpVv~v~~~~G~~G~-d------G~TH~~~---~d~a-~~~~iP~l~V~~Psd~~E~~~~l~~a~~ 548 (722)
-.-+ +..+...++|+++++.+.+.+|. . +..+... .|.. +...+ |+.-+.-.+++|+...++.|++
T Consensus 464 ~~~E--L~Ta~r~~lpi~~vV~NN~~yg~~~~~~~~~~~~~~~~~~~~df~~lA~a~-G~~g~~V~~~~el~~al~~a~~ 540 (565)
T PRK06154 464 TGMD--FETAVRERIPILTILLNNFSMGGYDKVMPVSTTKYRATDISGDYAAIARAL-GGYGERVEDPEMLVPALLRALR 540 (565)
T ss_pred cHHH--HHHHHHhCCCeEEEEEECCccceeehhhhhhcCcccccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHh
Confidence 4433 45777889998877744432221 0 1111100 1333 33333 6777777899999999999986
Q ss_pred --hCCCCEEEEe
Q 004946 549 --IDDRPVCFRY 558 (722)
Q Consensus 549 --~~~~Pv~ir~ 558 (722)
..++|++|-.
T Consensus 541 ~~~~~~p~lIev 552 (565)
T PRK06154 541 KVKEGTPALLEV 552 (565)
T ss_pred hccCCCeEEEEE
Confidence 2577998854
No 271
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=81.69 E-value=12 Score=37.21 Aligned_cols=146 Identities=12% Similarity=0.099 Sum_probs=75.1
Q ss_pred HHHHHHHHHhcCCCEEEEecCCCCccc-hHHHHHhCCCceeeccc-c-hHHHHHHHHHHhcCC-CeeEEEe--cHhhHHH
Q 004946 407 FIEALVMEAEKDKDIVVVHAGMEMDLS-LQLFQEKFPERYFDVGM-A-EQHAVTFSAGLACGG-LKPFCII--PSAFLQR 480 (722)
Q Consensus 407 ~~~~L~~~~~~d~~iv~i~ad~~~~~~-l~~f~~~~p~R~~d~GI-a-E~~av~~AaGlA~~G-~~p~~~t--~~~Fl~r 480 (722)
+.+.|.+.+..| .+++ .|.+.... ...+.-..|.+++..+- . =-..++.|.|+++.- -++++.+ -..|+.-
T Consensus 7 ~~~~l~~~l~~~-~iiv--~d~g~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG~f~~~ 83 (183)
T cd02005 7 LWQQVQNFLKPN-DILV--AETGTSWFGALDLKLPKGTRFISQPLWGSIGYSVPAALGAALAAPDRRVILLVGDGSFQMT 83 (183)
T ss_pred HHHHHHHhcCCC-CEEE--ECCchHHHhhhhccCCCCCEEEeccchhhHhhhHHHHHHHHHhCCCCeEEEEECCchhhcc
Confidence 445555555433 3433 34443221 12222234667776421 1 112445666666552 3555555 4666543
Q ss_pred HHHHHHHHHhcCCCCEEEEE-eCCCccCC----CC--CCcCc--HHHHH-HhcCC---CCcEEEeeCCHHHHHHHHHHHh
Q 004946 481 AYDQVVNDVDQQRLPVRFVI-TSAGLVGS----DG--PTQCG--AFDIT-FMSCL---PNMIVMAPSDEDELVDMVATVA 547 (722)
Q Consensus 481 a~dqi~~~~a~~~lpVv~v~-~~~G~~G~----dG--~TH~~--~~d~a-~~~~i---P~l~V~~Psd~~E~~~~l~~a~ 547 (722)
.. .+. .+...++|+++++ .+.|+ +. .+ ..+.. ..|.. +.... |++..+...+..|+...+++++
T Consensus 84 ~~-el~-ta~~~~~p~~ivV~nN~~~-~~~~~~~~~~~~~~~~~~~d~~~ia~a~G~~~~~~~~~v~~~~el~~al~~a~ 160 (183)
T cd02005 84 VQ-ELS-TMIRYGLNPIIFLINNDGY-TIERAIHGPEASYNDIANWNYTKLPEVFGGGGGGLSFRVKTEGELDEALKDAL 160 (183)
T ss_pred HH-HHH-HHHHhCCCCEEEEEECCCc-EEEEEeccCCcCcccCCCCCHHHHHHHhCCCccccEEEecCHHHHHHHHHHHH
Confidence 33 343 5666788877666 44443 21 11 11111 12322 22222 2367788899999999999998
Q ss_pred hhCCCCEEEEe
Q 004946 548 SIDDRPVCFRY 558 (722)
Q Consensus 548 ~~~~~Pv~ir~ 558 (722)
+..++|++|-.
T Consensus 161 ~~~~~p~liev 171 (183)
T cd02005 161 FNRDKLSLIEV 171 (183)
T ss_pred hcCCCcEEEEE
Confidence 63478998854
No 272
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=81.65 E-value=11 Score=36.23 Aligned_cols=51 Identities=16% Similarity=0.255 Sum_probs=35.1
Q ss_pred chHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHH-HhhhcCCCEEEEEECCCC
Q 004946 196 NSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMS-NAGYLDSNMIVILNDSRH 254 (722)
Q Consensus 196 ~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln-~A~~~~~plivIv~dN~~ 254 (722)
+.++.|.|+|+. | .+++++.. ..+. ..+++.+. .++.++.|++++....+.
T Consensus 50 ~~vg~A~GlA~~----G-~~pi~~~~--~~f~-~ra~dqi~~~~a~~~~pv~~~~~~~g~ 101 (156)
T cd07033 50 NMVGIAAGLALH----G-LKPFVSTF--SFFL-QRAYDQIRHDVALQNLPVKFVGTHAGI 101 (156)
T ss_pred HHHHHHHHHHHC----C-CeEEEEEC--HHHH-HHHHHHHHHHHhccCCCeEEEEECCcE
Confidence 345667777753 4 45555555 4443 47888888 778888999999886654
No 273
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=80.78 E-value=16 Score=48.53 Aligned_cols=113 Identities=16% Similarity=0.199 Sum_probs=75.3
Q ss_pred ceeecccchHHHHHHHHHHhcCCCeeEEE--ecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCc--cCCCCCCcCcHHHH
Q 004946 444 RYFDVGMAEQHAVTFSAGLACGGLKPFCI--IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDI 519 (722)
Q Consensus 444 R~~d~GIaE~~av~~AaGlA~~G~~p~~~--t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~d~ 519 (722)
|++.+ ..|++++-||.|.|..-.+|.++ |..+....++-.+ ..+...+.||+++...... .+. ..+|.+...
T Consensus 341 ~~i~~-rhErsAafmAdGyAR~TgkpgV~i~TsGPG~tN~l~av-~eA~~d~vPlLvItgd~p~~~~~~--ga~Q~iDq~ 416 (1655)
T PLN02980 341 TCIAC-FDERSLAFHALGYARGSLKPAVVITSSGTAVSNLLPAV-VEASQDFVPLLLLTADRPPELQDA--GANQAINQV 416 (1655)
T ss_pred eEEec-cCcchHHHHHHHHHHHhCCCEEEEEeCcHHHHHHHHHH-HHHhhcCCCEEEEeCCCCHHHhcC--CCCcccchh
Confidence 67666 99999999999999985555554 4788887777544 5777889999988643332 232 237777777
Q ss_pred HHhcCCCCcEEE--eeCCH-------HHHHHHHHHHhhhCCCCEEEEecC
Q 004946 520 TFMSCLPNMIVM--APSDE-------DELVDMVATVASIDDRPVCFRYPR 560 (722)
Q Consensus 520 a~~~~iP~l~V~--~Psd~-------~E~~~~l~~a~~~~~~Pv~ir~~r 560 (722)
.+++.+-.+..- .|.+. ..+..++..|..-..+||+|-+|.
T Consensus 417 ~lf~pvtK~s~~v~~p~~~~~~~~l~~~v~~A~~~A~s~rpGPVhL~iP~ 466 (1655)
T PLN02980 417 NHFGSFVRFFFNLPPPTDLIPARMVLTTLDSAVHWATSSPCGPVHINCPF 466 (1655)
T ss_pred hHHHhhhheeecCCCccchhhHHHHHHHHHHHHHHHhCCCCCCEEEECcc
Confidence 888877666544 34441 233444444433235899999884
No 274
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=80.76 E-value=17 Score=35.58 Aligned_cols=30 Identities=23% Similarity=0.350 Sum_probs=23.8
Q ss_pred CceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEEE
Q 004946 329 GLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVH 363 (722)
Q Consensus 329 G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~ 363 (722)
|+.++-| .|..+...+++.+.+ .++|+++.
T Consensus 135 g~~V~~P---sd~~e~~~~l~~~~~--~~~P~~~~ 164 (167)
T cd07036 135 GLKVVAP---STPYDAKGLLKAAIR--DDDPVIFL 164 (167)
T ss_pred CCEEEee---CCHHHHHHHHHHHHh--CCCcEEEE
Confidence 6777777 788888888888887 47899875
No 275
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=79.88 E-value=5.9 Score=32.67 Aligned_cols=65 Identities=15% Similarity=0.190 Sum_probs=44.5
Q ss_pred cEEEEEechhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhc-CCCeEEEEcCCCCCChHH
Q 004946 590 DVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQ-NHTFLITVEEGSIGGFGS 656 (722)
Q Consensus 590 dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~-~~~~vvvvEe~~~gG~gs 656 (722)
+|+|.+. +....|..|.+.|++.||..+.+|+..-.+. .+.+.+... .+-.+|++.+..+||+-+
T Consensus 2 ~v~ly~~-~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~-~~el~~~~g~~~vP~v~i~~~~iGg~~~ 67 (73)
T cd03027 2 RVTIYSR-LGCEDCTAVRLFLREKGLPYVEINIDIFPER-KAELEERTGSSVVPQIFFNEKLVGGLTD 67 (73)
T ss_pred EEEEEec-CCChhHHHHHHHHHHCCCceEEEECCCCHHH-HHHHHHHhCCCCcCEEEECCEEEeCHHH
Confidence 4666665 4557799999999999999999999753332 233444433 333677777767888763
No 276
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=79.79 E-value=3.4 Score=39.53 Aligned_cols=114 Identities=18% Similarity=0.253 Sum_probs=65.5
Q ss_pred hCCCceeec--ccchHHHHHHHHHHhcCC-CeeEEEe--cHhhHHHHHHHHHHHHhcCCCCEEEEE-eCCCc--cC----
Q 004946 440 KFPERYFDV--GMAEQHAVTFSAGLACGG-LKPFCII--PSAFLQRAYDQVVNDVDQQRLPVRFVI-TSAGL--VG---- 507 (722)
Q Consensus 440 ~~p~R~~d~--GIaE~~av~~AaGlA~~G-~~p~~~t--~~~Fl~ra~dqi~~~~a~~~lpVv~v~-~~~G~--~G---- 507 (722)
..|.+|+.. .-+=..+++.|.|++++. -++++++ -..|+.-.- . +..+...++|+++++ ++.+. .+
T Consensus 16 ~~p~~~~~~~~~g~mG~~~~~aiGa~~a~p~~~vv~i~GDG~f~~~~~-e-l~ta~~~~~~v~~vv~nN~~~~~~~~~~~ 93 (153)
T PF02775_consen 16 RRPRRFLTSGGFGSMGYALPAAIGAALARPDRPVVAITGDGSFLMSLQ-E-LATAVRYGLPVVIVVLNNGGYGMTGGQQT 93 (153)
T ss_dssp SSTTEEEESTTTT-TTTHHHHHHHHHHHSTTSEEEEEEEHHHHHHHGG-G-HHHHHHTTSSEEEEEEESSBSHHHHHHHH
T ss_pred CCCCeEEcCCCccccCCHHHhhhHHHhhcCcceeEEecCCcceeeccc-h-hHHHhhccceEEEEEEeCCcceEeccccc
Confidence 347788872 223344667777777762 4555555 466665532 2 356677899977766 44443 10
Q ss_pred CCCC-C----c---CcHHHH-HHhcCCCCcEEEeeCCH--HHHHHHHHHHhhhCCCCEEEE
Q 004946 508 SDGP-T----Q---CGAFDI-TFMSCLPNMIVMAPSDE--DELVDMVATVASIDDRPVCFR 557 (722)
Q Consensus 508 ~dG~-T----H---~~~~d~-a~~~~iP~l~V~~Psd~--~E~~~~l~~a~~~~~~Pv~ir 557 (722)
..+. + . ...-|+ .+.+.+ |+..+.-.++ +|+...+++|++ .++|++|-
T Consensus 94 ~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~~~el~~al~~a~~-~~gp~vIe 152 (153)
T PF02775_consen 94 PFGGGRFSGVDGKTFPNPDFAALAEAF-GIKGARVTTPDPEELEEALREALE-SGGPAVIE 152 (153)
T ss_dssp HTTSTCHHSTBTTTSTTCGHHHHHHHT-TSEEEEESCHSHHHHHHHHHHHHH-SSSEEEEE
T ss_pred cCcCcccccccccccccCCHHHHHHHc-CCcEEEEccCCHHHHHHHHHHHHh-CCCcEEEE
Confidence 0111 0 0 111122 333333 6666664455 999999999985 78999873
No 277
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=77.57 E-value=9.2 Score=33.20 Aligned_cols=67 Identities=21% Similarity=0.177 Sum_probs=47.6
Q ss_pred CCcEEEEEech----hhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhc----CCCeEEEEcCCCCCChHHHH
Q 004946 588 GKDVALLGYGA----MVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQ----NHTFLITVEEGSIGGFGSHV 658 (722)
Q Consensus 588 G~dv~lva~Gs----~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~----~~~~vvvvEe~~~gG~gs~v 658 (722)
..+|+|++.|+ ....|..|.+.|++.|+..+.+|+.. |.+...++.+ .+=+.|++.....||+....
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~----~~~~~~~l~~~~g~~tvP~vfi~g~~iGG~~~l~ 81 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILE----DEEVRQGLKEYSNWPTFPQLYVNGELVGGCDIVK 81 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCC----CHHHHHHHHHHhCCCCCCEEEECCEEEeCHHHHH
Confidence 46899999984 67899999999999999999999753 3333223222 23356777766689987543
No 278
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=76.31 E-value=25 Score=41.00 Aligned_cols=144 Identities=10% Similarity=0.103 Sum_probs=75.2
Q ss_pred HHHHHHHHHhcCCCEEEEecCCCCcc-chHHHHHhCCCceeecccchHHHHH----HHHHHhcCC-CeeEEEe--cHhhH
Q 004946 407 FIEALVMEAEKDKDIVVVHAGMEMDL-SLQLFQEKFPERYFDVGMAEQHAVT----FSAGLACGG-LKPFCII--PSAFL 478 (722)
Q Consensus 407 ~~~~L~~~~~~d~~iv~i~ad~~~~~-~l~~f~~~~p~R~~d~GIaE~~av~----~AaGlA~~G-~~p~~~t--~~~Fl 478 (722)
+.+.|.+.+.+| .+++. |.+... ....+.-..|.+++..+ -...+| .|.|++++. -+|++++ -..|+
T Consensus 361 ~~~~l~~~l~~~-~iiv~--d~G~~~~~~~~~~~~~~~~~~~~~--~~g~mG~glpaaiGa~la~p~~~vv~i~GDG~f~ 435 (539)
T TIGR03393 361 FWQTLQTFLRPG-DIILA--DQGTSAFGAADLRLPADVNFIVQP--LWGSIGYTLPAAFGAQTACPNRRVILLIGDGSAQ 435 (539)
T ss_pred HHHHHHHhcCCC-CEEEE--ccCchhhhhhhccCCCCCeEEech--hhhhhhhHHHHHHHHHhcCCCCCeEEEEcCcHHH
Confidence 555566665433 34433 444322 11111112245777543 234444 455555552 3556665 45665
Q ss_pred HHHHHHHHHHHhcCCCCEEEEE-eCCCccCC----CC--CCcCc--HHHHHHhcCCCCc----EEEeeCCHHHHHHHHHH
Q 004946 479 QRAYDQVVNDVDQQRLPVRFVI-TSAGLVGS----DG--PTQCG--AFDITFMSCLPNM----IVMAPSDEDELVDMVAT 545 (722)
Q Consensus 479 ~ra~dqi~~~~a~~~lpVv~v~-~~~G~~G~----dG--~TH~~--~~d~a~~~~iP~l----~V~~Psd~~E~~~~l~~ 545 (722)
+-..+ +..+...++|+++++ .+.++ |. .+ ..+.. ..|..-+..--|. .-+.-.+..|+...+++
T Consensus 436 m~~~E--L~Ta~~~~lpi~~vV~NN~~y-~~i~~~~~~~~~~~~~~~~df~~la~a~G~~~~~~~~~v~~~~el~~al~~ 512 (539)
T TIGR03393 436 LTIQE--LGSMLRDKQHPIILVLNNEGY-TVERAIHGAEQRYNDIALWNWTHLPQALSLDPQSECWRVSEAEQLADVLEK 512 (539)
T ss_pred hHHHH--HHHHHHcCCCCEEEEEeCCce-EEEEeecCCCCCcCcCCCCCHHHHHHHcCCCCccceEEeccHHHHHHHHHH
Confidence 54432 457778899977766 44443 20 01 11111 1122212211133 36777999999999999
Q ss_pred HhhhCCCCEEEEec
Q 004946 546 VASIDDRPVCFRYP 559 (722)
Q Consensus 546 a~~~~~~Pv~ir~~ 559 (722)
+++ .++|++|-..
T Consensus 513 a~~-~~~p~liev~ 525 (539)
T TIGR03393 513 VAA-HERLSLIEVV 525 (539)
T ss_pred Hhc-cCCeEEEEEE
Confidence 986 6889998653
No 279
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=75.23 E-value=9.9 Score=41.75 Aligned_cols=101 Identities=15% Similarity=0.116 Sum_probs=50.8
Q ss_pred HHHHHHHHhcCC-CeeEEEecH--hhHHHHHHHHHHHHhcCCCCEEEEEeCCCccCCCCCCcC--cHHHHH---HhcCCC
Q 004946 455 AVTFSAGLACGG-LKPFCIIPS--AFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQC--GAFDIT---FMSCLP 526 (722)
Q Consensus 455 av~~AaGlA~~G-~~p~~~t~~--~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~--~~~d~a---~~~~iP 526 (722)
++|+|.|..+.+ -+++++++. .|.+-.+-+-++.++..++||++++.+.+. +...++.. ...|++ -.-.+|
T Consensus 131 AiGaAla~k~~~~~~~vv~~~GDGa~~~g~~~EaL~tA~~~~LPvi~Vv~NN~~-~~~~~~~~~~~~~d~~~~a~a~G~~ 209 (341)
T TIGR03181 131 AAGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEALNFAGVFKAPVVFFVQNNQW-AISVPRSKQTAAPTLAQKAIAYGIP 209 (341)
T ss_pred HHhHHHHHHhhCCCCEEEEEecCCccccChHHHHHHHHhccCCCEEEEEECCCC-ccccchhhhhCCcCHHHHHhhCCCC
Confidence 344444443333 456666654 454332334457888999999999976664 21122221 112222 222355
Q ss_pred CcEEEeeCCHHHHHH----HHHHHhhhCCCCEEEEe
Q 004946 527 NMIVMAPSDEDELVD----MVATVASIDDRPVCFRY 558 (722)
Q Consensus 527 ~l~V~~Psd~~E~~~----~l~~a~~~~~~Pv~ir~ 558 (722)
+..| .-.|..++.. +++.|.. .++|++|-.
T Consensus 210 ~~~V-dg~d~~av~~a~~~A~~~a~~-~~gP~lIev 243 (341)
T TIGR03181 210 GVQV-DGNDVLAVYAVTKEAVERARS-GGGPTLIEA 243 (341)
T ss_pred EEEE-CCCCHHHHHHHHHHHHHHHHc-CCCCEEEEE
Confidence 4443 2334443344 4444433 478999854
No 280
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=74.88 E-value=27 Score=41.32 Aligned_cols=108 Identities=13% Similarity=0.236 Sum_probs=62.9
Q ss_pred eecccchHHHHHHHHHHhcC----CC-eeEEEec--HhhHH-HHHHHHHHHHhcCCCCEEEEEeCCCccCCCCCCc---C
Q 004946 446 FDVGMAEQHAVTFSAGLACG----GL-KPFCIIP--SAFLQ-RAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQ---C 514 (722)
Q Consensus 446 ~d~GIaE~~av~~AaGlA~~----G~-~p~~~t~--~~Fl~-ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH---~ 514 (722)
+.+|+.= +.+++|.|+|.+ |. ..++++. +.+.. .+++. ++.++..++|++++++.-+. +.++++- .
T Consensus 110 ~~~g~~~-~~ls~A~G~A~A~k~~~~~~~vv~~iGDG~~~eG~~~EA-ln~A~~~k~~li~Ii~dN~~-si~~~~~~~~~ 186 (581)
T PRK12315 110 FTVGHTS-TSIALATGLAKARDLKGEKGNIIAVIGDGSLSGGLALEG-LNNAAELKSNLIIIVNDNQM-SIAENHGGLYK 186 (581)
T ss_pred cCCCcHH-HHHHHHHHHHHHHHhcCCCCeEEEEECchhhhcchHHHH-HHHHHhhCCCEEEEEECCCC-cCCCCCchhhh
Confidence 4556633 467788888775 32 2334443 44444 45654 47888889999999987765 2222221 0
Q ss_pred cHH--------H-HHHhcCCCCcEEE---eeCCHHHHHHHHHHHhhhCCCCEEEEe
Q 004946 515 GAF--------D-ITFMSCLPNMIVM---APSDEDELVDMVATVASIDDRPVCFRY 558 (722)
Q Consensus 515 ~~~--------d-~a~~~~iP~l~V~---~Psd~~E~~~~l~~a~~~~~~Pv~ir~ 558 (722)
... + -..+..+ ||..+ ..-|..++...++.|-+ .++|++|..
T Consensus 187 ~l~~~~~~~~~~~~~~~~a~-G~~~~~v~DG~D~~~l~~a~~~a~~-~~gP~~i~~ 240 (581)
T PRK12315 187 NLKELRDTNGQSENNLFKAM-GLDYRYVEDGNDIESLIEAFKEVKD-IDHPIVLHI 240 (581)
T ss_pred hhhhhhhcccccHHHHHHhc-CCeEEEeeCCCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 000 0 1233443 55554 45677777777777643 578999854
No 281
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=74.12 E-value=37 Score=32.26 Aligned_cols=57 Identities=23% Similarity=0.183 Sum_probs=36.7
Q ss_pred CCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCC
Q 004946 192 GHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRH 254 (722)
Q Consensus 192 G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~ 254 (722)
-|=..+..+|.|.+.+. .+.-++.+....++. ...+++..|...+.|+++|.-+...
T Consensus 41 ~~E~~A~~~A~g~~~~~----~~~~v~~~~~gpG~~--n~~~~l~~A~~~~~Pll~i~~~~~~ 97 (155)
T cd07035 41 RHEQGAVGMADGYARAT----GKPGVVLVTSGPGLT--NAVTGLANAYLDSIPLLVITGQRPT 97 (155)
T ss_pred CCHHHHHHHHHHHHHHH----CCCEEEEEcCCCcHH--HHHHHHHHHHhhCCCEEEEeCCCcc
Confidence 34445666777777763 123344444244443 4668899999889999999866554
No 282
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=73.57 E-value=14 Score=32.59 Aligned_cols=70 Identities=16% Similarity=0.136 Sum_probs=48.6
Q ss_pred CCcEEEEEec----hhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhc-CCCeEEEEcCCCCCChHHHH
Q 004946 588 GKDVALLGYG----AMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQ-NHTFLITVEEGSIGGFGSHV 658 (722)
Q Consensus 588 G~dv~lva~G----s~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~-~~~~vvvvEe~~~gG~gs~v 658 (722)
..+|+|++.| +....|..|.+.|++.|++...+|+.. .|--.+.+.+.-. .+=+.|++.....||+....
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~-~~~~~~~l~~~tg~~tvP~vfi~g~~iGG~ddl~ 85 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLE-DPEIRQGIKEYSNWPTIPQLYVKGEFVGGCDIIM 85 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCC-CHHHHHHHHHHhCCCCCCEEEECCEEEeChHHHH
Confidence 4689999988 467899999999999999999999853 1211223333221 23356778876789987554
No 283
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=73.46 E-value=20 Score=40.68 Aligned_cols=118 Identities=21% Similarity=0.270 Sum_probs=67.9
Q ss_pred HHHHhCCCceeecccchHHHH--HHHHHHhcC-CCeeEEEe--cHhhHHHHHHHHHHHHhcCCCCEEEEEe-CCCccCCC
Q 004946 436 LFQEKFPERYFDVGMAEQHAV--TFSAGLACG-GLKPFCII--PSAFLQRAYDQVVNDVDQQRLPVRFVIT-SAGLVGSD 509 (722)
Q Consensus 436 ~f~~~~p~R~~d~GIaE~~av--~~AaGlA~~-G~~p~~~t--~~~Fl~ra~dqi~~~~a~~~lpVv~v~~-~~G~~G~d 509 (722)
-+..+-|-|..|-|--=..-| |+|.++|.. -.+.++++ -+.|=.-+++ +..++..+|||++++. +.|++|.|
T Consensus 414 ~l~~~~Pr~rLDaGtfgTMGVG~Gfalaaa~~~P~~~V~~veGDsaFGfSaME--~ET~vR~~Lpvv~vV~NN~Giyg~d 491 (571)
T KOG1185|consen 414 LLPPRGPRRRLDAGTFGTMGVGLGFALAAALAAPDRKVVCVEGDSAFGFSAME--LETFVRYKLPVVIVVGNNNGIYGLD 491 (571)
T ss_pred hccCCCcccccCCccccccccchhHHHHHHhhCCCCeEEEEecCcccCcchhh--HHHHHHhcCCeEEEEecCCcccccC
Confidence 455567888888775332222 334444443 23344444 4556444444 3466788999888775 67776644
Q ss_pred CCCcCcH-------------------HHHHHhcCCCCcEEEeeCCHHHHHHHHHHHhhhCCCCEEEE
Q 004946 510 GPTQCGA-------------------FDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFR 557 (722)
Q Consensus 510 G~TH~~~-------------------~d~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~~~~Pv~ir 557 (722)
-.+.-++ +| .++..+ |.+=+.-.++.|+...++.++...++|++|-
T Consensus 492 ~~~~~~I~e~~~~~~~p~~~l~~~~rY~-~v~ka~-G~kG~~v~t~~el~~~l~~a~q~~~~psvIN 556 (571)
T KOG1185|consen 492 DDGWKQISEQDPTLDLPPTALLANTRYD-KVAKAF-GGKGYFVSTVEELLAALQQACQDTDKPSVIN 556 (571)
T ss_pred cccHHHHhhcCcccCCCcccccccccHH-HHHHHc-CCCceeeCCHHHHHHHHHHHHhcCCCCeEEE
Confidence 3222221 11 111112 2223444699999999999998777899873
No 284
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=72.47 E-value=20 Score=42.29 Aligned_cols=101 Identities=14% Similarity=0.246 Sum_probs=60.8
Q ss_pred HHHHHHHHhcC-----C-CeeEEEecHhh-HH--HHHHHHHHHHhcCCCCEEEEEeCCCccCCCCCCcC-----cHHHH-
Q 004946 455 AVTFSAGLACG-----G-LKPFCIIPSAF-LQ--RAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQC-----GAFDI- 519 (722)
Q Consensus 455 av~~AaGlA~~-----G-~~p~~~t~~~F-l~--ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~-----~~~d~- 519 (722)
.+++|.|+|++ + -++++++..+. ++ ..++. ++.++..++|+++++++.++ +-++++.. ...++
T Consensus 122 gl~~AvG~A~a~~~~~~~~~~v~~i~GDG~l~eG~~~Ea-l~~A~~~~~nli~IvdnN~~-~i~~~~~~~~~~~~~~~~~ 199 (580)
T PRK05444 122 SISAALGMAKARDLKGGEDRKVVAVIGDGALTGGMAFEA-LNNAGDLKSDLIVILNDNEM-SISPNVGALSNYLARLRSS 199 (580)
T ss_pred HHHHHHHHHHHHHhhCCCCCeEEEEEcccccccCHHHHH-HHHHHhhCCCEEEEEECCCC-cCCCcchhhhhhhccccHH
Confidence 45667776654 1 34566665443 22 44443 35677778999999888775 33444421 11221
Q ss_pred HHhcCCCCcEEEee---CCHHHHHHHHHHHhhhCCCCEEEEec
Q 004946 520 TFMSCLPNMIVMAP---SDEDELVDMVATVASIDDRPVCFRYP 559 (722)
Q Consensus 520 a~~~~iP~l~V~~P---sd~~E~~~~l~~a~~~~~~Pv~ir~~ 559 (722)
..++.. ||.++.+ .|..++...+..+.. .++|++|...
T Consensus 200 ~~~~a~-G~~~~~~vdG~d~~~l~~al~~a~~-~~~P~lI~~~ 240 (580)
T PRK05444 200 TLFEEL-GFNYIGPIDGHDLDALIETLKNAKD-LKGPVLLHVV 240 (580)
T ss_pred HHHHHc-CCCeeeeeCCCCHHHHHHHHHHHHh-CCCCEEEEEE
Confidence 233443 6766644 788999999888865 5789998653
No 285
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=72.22 E-value=25 Score=41.92 Aligned_cols=58 Identities=17% Similarity=0.327 Sum_probs=38.5
Q ss_pred cCcCCC-cchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHH-HHhhhcCCCEEEEEECCCC
Q 004946 189 FNAGHG-CNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAM-SNAGYLDSNMIVILNDSRH 254 (722)
Q Consensus 189 ~~~G~~-G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAl-n~A~~~~~plivIv~dN~~ 254 (722)
|-+|.. .+.++.|.|||++ | -++++++ -+.|.. -++|.+ +.++..+.|++++....+.
T Consensus 355 ~d~GIaEq~~vg~AaGlA~~----G-~~Pvv~~--~a~Fl~-ra~dQi~~~~a~~~lpV~i~~~~~G~ 414 (617)
T TIGR00204 355 FDVAIAEQHAVTFAAGMAIE----G-YKPFVAI--YSTFLQ-RAYDQVVHDVCIQKLPVLFAIDRAGI 414 (617)
T ss_pred ccCCccHHHHHHHHHHHHHC----C-CEEEEEe--cHHHHH-HHHHHHHHHHHhcCCCEEEEEECCCc
Confidence 444432 3456678888763 2 3455554 566664 777777 5578888999999988775
No 286
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=72.04 E-value=57 Score=31.60 Aligned_cols=54 Identities=13% Similarity=0.141 Sum_probs=37.4
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhh-hcCCCEEEEEECCCC
Q 004946 193 HGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAG-YLDSNMIVILNDSRH 254 (722)
Q Consensus 193 ~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~-~~~~plivIv~dN~~ 254 (722)
+-+.+.++|.|.+++ .++.++|+.+=| . |-..-+|..|. ..+.||++|+-.-+.
T Consensus 42 ~ee~aa~~aAg~~~~-----~~~~~v~~~~sG-~--gn~~~~l~~a~~~~~~Pvl~i~g~rg~ 96 (157)
T TIGR03845 42 REEEGVGICAGAYLA-----GKKPAILMQSSG-L--GNSINALASLNKTYGIPLPILASWRGV 96 (157)
T ss_pred ChHHHHHHHHHHHHh-----cCCcEEEEeCCc-H--HHHHHHHHHHHHcCCCCEEEEEeccCC
Confidence 345566777777644 356678888777 3 35667788888 677999999955543
No 287
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=71.73 E-value=13 Score=39.74 Aligned_cols=89 Identities=17% Similarity=0.175 Sum_probs=50.0
Q ss_pred eeEEEec--HhhHHHHHHHHHHHHhcCCCCEEEEEeCCCccCCCCCCcC-----cHHHHHHhcCCCCcEEEeeCCHHHHH
Q 004946 468 KPFCIIP--SAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQC-----GAFDITFMSCLPNMIVMAPSDEDELV 540 (722)
Q Consensus 468 ~p~~~t~--~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~-----~~~d~a~~~~iP~l~V~~Psd~~E~~ 540 (722)
+++++++ ..|.+-.+-+-++.++..++|+++++.+.++ +...++.. ...+++-.-.+|+..| .=.|..++.
T Consensus 127 ~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~vv~NN~~-~i~~~~~~~~~~~~~~~~a~a~G~~~~~V-dg~d~~~v~ 204 (293)
T cd02000 127 RVAVCFFGDGATNEGDFHEALNFAALWKLPVIFVCENNGY-AISTPTSRQTAGTSIADRAAAYGIPGIRV-DGNDVLAVY 204 (293)
T ss_pred CEEEEEeCCCccccchHHHHHHHHHhhCCCEEEEEeeCCe-eccCCHHHHhCCccHHHHHHhCCCCEEEE-CCCCHHHHH
Confidence 4455554 4454322324457888999999999976663 32222211 1222222223554432 334677888
Q ss_pred HHHHHHhh---hCCCCEEEEe
Q 004946 541 DMVATVAS---IDDRPVCFRY 558 (722)
Q Consensus 541 ~~l~~a~~---~~~~Pv~ir~ 558 (722)
..++.|++ ..++|++|-.
T Consensus 205 ~a~~~A~~~ar~~~~P~lIev 225 (293)
T cd02000 205 EAAKEAVERARAGGGPTLIEA 225 (293)
T ss_pred HHHHHHHHHHHccCCCEEEEE
Confidence 88887774 2467999854
No 288
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=69.86 E-value=56 Score=37.89 Aligned_cols=52 Identities=19% Similarity=0.256 Sum_probs=37.8
Q ss_pred HHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCC
Q 004946 201 GLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR 253 (722)
Q Consensus 201 A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~ 253 (722)
|.+.--||-.+..|-.|++|.+|-+.+. ++.||+.+|..-+.|+++-+|-=.
T Consensus 213 AF~aMRaRGA~vtDIvVLVVAadDGVmp-QT~EaIkhAk~A~VpiVvAinKiD 264 (683)
T KOG1145|consen 213 AFSAMRARGANVTDIVVLVVAADDGVMP-QTLEAIKHAKSANVPIVVAINKID 264 (683)
T ss_pred HHHHHHhccCccccEEEEEEEccCCccH-hHHHHHHHHHhcCCCEEEEEeccC
Confidence 3333333333445778888888888774 999999999999899988876533
No 289
>PLN02790 transketolase
Probab=68.45 E-value=31 Score=41.34 Aligned_cols=77 Identities=14% Similarity=0.203 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhcCCCC-EEEEEeCCCccCCCCCCcCc-HHHH-HHhcCCCCcEEEee----CCHHHHHHHHHHHhhhCCC
Q 004946 480 RAYDQVVNDVDQQRLP-VRFVITSAGLVGSDGPTQCG-AFDI-TFMSCLPNMIVMAP----SDEDELVDMVATVASIDDR 552 (722)
Q Consensus 480 ra~dqi~~~~a~~~lp-Vv~v~~~~G~~G~dG~TH~~-~~d~-a~~~~iP~l~V~~P----sd~~E~~~~l~~a~~~~~~ 552 (722)
.+++. ++.++..+|| ++++.+.-++ .-+|++... .+++ ..+..+ ||.++.+ .|..++..++..|.+..++
T Consensus 153 ~~~EA-l~~A~~~~L~nli~i~d~N~~-~i~~~~~~~~~~~~~~~f~a~-G~~~~~vdgg~hd~~~l~~a~~~a~~~~~~ 229 (654)
T PLN02790 153 ISNEA-ASLAGHWGLGKLIVLYDDNHI-SIDGDTEIAFTEDVDKRYEAL-GWHTIWVKNGNTDYDEIRAAIKEAKAVTDK 229 (654)
T ss_pred HHHHH-HHHHHHhCCCCEEEEEecCCc-cccCCcccccchhHHHHHHHc-CCeEEEECCCCCCHHHHHHHHHHHHhcCCC
Confidence 34543 4678889997 7777777664 334454331 2332 345665 9999998 4677888888877543578
Q ss_pred CEEEEec
Q 004946 553 PVCFRYP 559 (722)
Q Consensus 553 Pv~ir~~ 559 (722)
|++|...
T Consensus 230 P~lI~~~ 236 (654)
T PLN02790 230 PTLIKVT 236 (654)
T ss_pred eEEEEEE
Confidence 9998653
No 290
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=67.46 E-value=43 Score=32.67 Aligned_cols=55 Identities=20% Similarity=0.230 Sum_probs=32.1
Q ss_pred cCCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEEC
Q 004946 191 AGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILND 251 (722)
Q Consensus 191 ~G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~d 251 (722)
+-|=..+.-+|-|.|.+. ++-..+++..|=|..+ ..-++.+|...+.|||+|.-+
T Consensus 41 ~rhE~~A~~mAdgyar~s---g~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~ 95 (162)
T cd07037 41 RVDERSAAFFALGLAKAS---GRPVAVVCTSGTAVAN---LLPAVVEAYYSGVPLLVLTAD 95 (162)
T ss_pred ccChHHHHHHHHHHHHhh---CCCEEEEECCchHHHH---HhHHHHHHHhcCCCEEEEECC
Confidence 344444555666776652 3223333333545553 345788888888999999843
No 291
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=66.53 E-value=71 Score=31.35 Aligned_cols=39 Identities=18% Similarity=0.353 Sum_probs=27.1
Q ss_pred hHhhc-CceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEEEEE
Q 004946 324 LFEEL-GLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVV 365 (722)
Q Consensus 324 lfea~-G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~ 365 (722)
++..+ |+.++.| .|..++...++.+.+...++|++|...
T Consensus 132 ~~~~iPg~~v~~P---sd~~e~~~~l~~a~~~~~~~P~~ir~~ 171 (178)
T PF02779_consen 132 ILRSIPGMKVVVP---SDPAEAKGLLRAAIRRESDGPVYIREP 171 (178)
T ss_dssp HHHTSTTEEEEE----SSHHHHHHHHHHHHHSSSSSEEEEEEE
T ss_pred ccccccccccccC---CCHHHHHHHHHHHHHhCCCCeEEEEee
Confidence 44444 7888878 788888888888876323789987643
No 292
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=66.51 E-value=41 Score=40.24 Aligned_cols=58 Identities=19% Similarity=0.355 Sum_probs=38.6
Q ss_pred cCcCCCc-chHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHH-HHhhhcCCCEEEEEECCCC
Q 004946 189 FNAGHGC-NSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAM-SNAGYLDSNMIVILNDSRH 254 (722)
Q Consensus 189 ~~~G~~G-~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAl-n~A~~~~~plivIv~dN~~ 254 (722)
|-+|..= +.+++|.|||++ | -+++++++ ..|.. .+++.+ +.++..++|++++.+.-+.
T Consensus 364 id~GIaE~~mvg~AaGlA~~----G-~~P~v~~f--~~Fl~-ra~dQI~~~~a~~~lpv~~v~~~~G~ 423 (641)
T PRK12571 364 FDVGIAEQHAVTFAAGLAAA----G-LKPFCAVY--STFLQ-RGYDQLLHDVALQNLPVRFVLDRAGL 423 (641)
T ss_pred cccCccHHHHHHHHHHHHHC----C-CEEEEEeh--HHHHH-HHHHHHHHHHhhcCCCeEEEEECCCc
Confidence 4444432 355677788763 2 35566664 45654 888888 5588889999999976664
No 293
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=66.23 E-value=23 Score=28.93 Aligned_cols=65 Identities=23% Similarity=0.246 Sum_probs=42.2
Q ss_pred EEEEEechhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcC--CCeEEEEcCCCCCChHHH
Q 004946 591 VALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQN--HTFLITVEEGSIGGFGSH 657 (722)
Q Consensus 591 v~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~--~~~vvvvEe~~~gG~gs~ 657 (722)
|+|.+. +....|.+|.+.|++.|+..+.+|+..- |-..+.+.+.... .=++|+++....||+.+.
T Consensus 2 i~ly~~-~~Cp~C~~ak~~L~~~~i~~~~i~i~~~-~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~ 68 (75)
T cd03418 2 VEIYTK-PNCPYCVRAKALLDKKGVDYEEIDVDGD-PALREEMINRSGGRRTVPQIFIGDVHIGGCDDL 68 (75)
T ss_pred EEEEeC-CCChHHHHHHHHHHHCCCcEEEEECCCC-HHHHHHHHHHhCCCCccCEEEECCEEEeChHHH
Confidence 444443 5568899999999999999999999753 2111222222221 235777887778887644
No 294
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=65.54 E-value=28 Score=29.26 Aligned_cols=72 Identities=17% Similarity=0.191 Sum_probs=45.6
Q ss_pred eCCcEEEEEechhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhc-CCCeEEEEcCCCCCChHHHHHHHH
Q 004946 587 EGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQ-NHTFLITVEEGSIGGFGSHVSHFI 662 (722)
Q Consensus 587 eG~dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~-~~~~vvvvEe~~~gG~gs~v~~~l 662 (722)
+..+|+|.+ -+....|.+|.+.|++.|+..+.+|+..- -+.+.+.+... .+=.+|+++....||+. +|.++|
T Consensus 6 ~~~~V~ly~-~~~Cp~C~~ak~~L~~~gi~y~~idi~~~--~~~~~~~~~~g~~~vP~i~i~g~~igG~~-~l~~~l 78 (79)
T TIGR02190 6 KPESVVVFT-KPGCPFCAKAKATLKEKGYDFEEIPLGND--ARGRSLRAVTGATTVPQVFIGGKLIGGSD-ELEAYL 78 (79)
T ss_pred CCCCEEEEE-CCCCHhHHHHHHHHHHcCCCcEEEECCCC--hHHHHHHHHHCCCCcCeEEECCEEEcCHH-HHHHHh
Confidence 345666555 57778999999999999999999998631 12223333222 22255667655578874 444444
No 295
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=64.57 E-value=16 Score=39.32 Aligned_cols=102 Identities=17% Similarity=0.228 Sum_probs=59.7
Q ss_pred HHHHHHHhcC----CCeeEEE-ecHhhH--HHHHHHHHHHHhcCCCCEEEEEeCCCc-cC---CCCCCcCcHHHHHHhcC
Q 004946 456 VTFSAGLACG----GLKPFCI-IPSAFL--QRAYDQVVNDVDQQRLPVRFVITSAGL-VG---SDGPTQCGAFDITFMSC 524 (722)
Q Consensus 456 v~~AaGlA~~----G~~p~~~-t~~~Fl--~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G---~dG~TH~~~~d~a~~~~ 524 (722)
+.+|+|.|.+ |-+.++. ++.+.. +=.+-.-+|.++..++||+|++.+-++ .+ ....+-....|.+..-.
T Consensus 107 ~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~EalN~A~~~~lPvifvveNN~~aist~~~~~~~~~~~~~~a~~~g 186 (300)
T PF00676_consen 107 VPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHEALNLAALWKLPVIFVVENNQYAISTPTEEQTASPDIADRAKGYG 186 (300)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHHHHHHHTTTSEEEEEEEESEETTEEHHHHCSSSTSGGGGGGTT
T ss_pred CccccchhHhhhhcCCceeEEEEecCcccccCccHHHHHHHhhccCCeEEEEecCCcccccCccccccccchhhhhhccC
Confidence 5555666664 5544443 343332 333334568999999999999965553 11 11111112344444445
Q ss_pred CCCcEEEeeCCHHHHHHHHHHHhhh---CCCCEEEEe
Q 004946 525 LPNMIVMAPSDEDELVDMVATVASI---DDRPVCFRY 558 (722)
Q Consensus 525 iP~l~V~~Psd~~E~~~~l~~a~~~---~~~Pv~ir~ 558 (722)
+|++. +.=.|+.++...++.|+++ ..+|++|-.
T Consensus 187 ip~~~-VDG~D~~av~~a~~~A~~~~R~g~gP~lie~ 222 (300)
T PF00676_consen 187 IPGIR-VDGNDVEAVYEAAKEAVEYARAGKGPVLIEA 222 (300)
T ss_dssp SEEEE-EETTSHHHHHHHHHHHHHHHHTTT--EEEEE
T ss_pred CcEEE-ECCEeHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 77665 4668899999999888863 467999854
No 296
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=64.01 E-value=31 Score=39.54 Aligned_cols=135 Identities=18% Similarity=0.199 Sum_probs=84.0
Q ss_pred CCEEEEecCCCCccchH--HHHHhCCC-ceeecccchHHHHHHHHHHhcC-CCeeEEEecHhhHHHHHHHHHHHHhc-CC
Q 004946 419 KDIVVVHAGMEMDLSLQ--LFQEKFPE-RYFDVGMAEQHAVTFSAGLACG-GLKPFCIIPSAFLQRAYDQVVNDVDQ-QR 493 (722)
Q Consensus 419 ~~iv~i~ad~~~~~~l~--~f~~~~p~-R~~d~GIaE~~av~~AaGlA~~-G~~p~~~t~~~Fl~ra~dqi~~~~a~-~~ 493 (722)
..|+.+-.| +.|. +.-..+|+ |++.. -+|-++.-.|=|.|.- |.-.++.||+..=.-|++-| --++ -+
T Consensus 20 ~~iFGVPGD----yNL~lLD~i~~~~~lrWvGn-~NELNaaYAADGYaR~~Gi~alvTTfGVGELSA~NGI--AGSYAE~ 92 (557)
T COG3961 20 KSIFGVPGD----YNLSLLDKIYSVPGLRWVGN-ANELNAAYAADGYARLNGISALVTTFGVGELSALNGI--AGSYAEH 92 (557)
T ss_pred ceeeeCCCc----ccHHHHHHhhcCCCceeecc-cchhhhhhhhcchhhhcCceEEEEecccchhhhhccc--chhhhhc
Confidence 346655444 4443 33334565 66655 6899999999999985 88899999998876776644 1122 48
Q ss_pred CCEEEEEeCCCc--cCCCCCCcC----cHHHHHHhcCCCCc----EEEeeCC--HHHHHHHHHHHhhhCCCCEEEEecCC
Q 004946 494 LPVRFVITSAGL--VGSDGPTQC----GAFDITFMSCLPNM----IVMAPSD--EDELVDMVATVASIDDRPVCFRYPRG 561 (722)
Q Consensus 494 lpVv~v~~~~G~--~G~dG~TH~----~~~d~a~~~~iP~l----~V~~Psd--~~E~~~~l~~a~~~~~~Pv~ir~~r~ 561 (722)
+||+.+....-- .+.+=--|| +.|+ -|++---++ ..+.+.+ +.|...++++++. ..+|+||-+|-.
T Consensus 93 vpVvhIvG~P~~~~q~~~~llHHTLG~gdF~-~f~~M~~~itca~a~l~~~~~A~~eIDrvi~~~~~-~~RPvYI~lP~d 170 (557)
T COG3961 93 VPVVHIVGVPTTSAQASGLLLHHTLGDGDFK-VFHRMSKEITCAQAMLTDINTAPREIDRVIRTALK-QRRPVYIGLPAD 170 (557)
T ss_pred CCEEEEEcCCCcchhhccchheeeccCCchH-HHHHHhhhhhhHhhhcCCcchhHHHHHHHHHHHHH-hcCCeEEEcchH
Confidence 999988733222 122223355 2333 232322222 1244554 7889999999986 689999998865
Q ss_pred C
Q 004946 562 A 562 (722)
Q Consensus 562 ~ 562 (722)
.
T Consensus 171 v 171 (557)
T COG3961 171 V 171 (557)
T ss_pred H
Confidence 3
No 297
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=63.68 E-value=25 Score=38.64 Aligned_cols=91 Identities=15% Similarity=0.139 Sum_probs=49.1
Q ss_pred CeeEEEecH--hhHHHHHHHHHHHHhcCCCCEEEEEeCCCc-cCC--CCCCc-CcHHHHHHhcCCCCcEEEeeCCHHHHH
Q 004946 467 LKPFCIIPS--AFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGS--DGPTQ-CGAFDITFMSCLPNMIVMAPSDEDELV 540 (722)
Q Consensus 467 ~~p~~~t~~--~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~--dG~TH-~~~~d~a~~~~iP~l~V~~Psd~~E~~ 540 (722)
-+++++++. .|.+-.+-.-++.++..++||++++.+.+. .+. ...+. ....+.+-.-.+|++.| .=.|..++.
T Consensus 157 ~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvifvv~NN~~~i~~~~~~~~~~~d~a~~a~a~G~~~~~V-dg~d~~av~ 235 (341)
T CHL00149 157 LRVTACFFGDGTTNNGQFFECLNMAVLWKLPIIFVVENNQWAIGMAHHRSTSIPEIHKKAEAFGLPGIEV-DGMDVLAVR 235 (341)
T ss_pred CCEEEEEeCCchhhhcHHHHHHHHHhhcCCCEEEEEEeCCeeeecchhheeCCccHHHHHHhCCCCEEEE-eCCCHHHHH
Confidence 456666654 343211112357788899999999976663 221 01111 12333333345777765 334655555
Q ss_pred HHHHHHhh---hCCCCEEEEe
Q 004946 541 DMVATVAS---IDDRPVCFRY 558 (722)
Q Consensus 541 ~~l~~a~~---~~~~Pv~ir~ 558 (722)
..++.|++ ..++|++|-.
T Consensus 236 ~a~~~A~~~ar~~~gP~lIev 256 (341)
T CHL00149 236 EVAKEAVERARQGDGPTLIEA 256 (341)
T ss_pred HHHHHHHHHHHhCCCCEEEEE
Confidence 55555544 2467999854
No 298
>PRK05899 transketolase; Reviewed
Probab=63.46 E-value=60 Score=38.75 Aligned_cols=70 Identities=13% Similarity=0.188 Sum_probs=47.0
Q ss_pred HHHhcCCCC-EEEEEeCCCccCCCCCCcC-cHHHH-HHhcCCCCcEEEeeC--CHHHHHHHHHHHhhhCCCCEEEEec
Q 004946 487 NDVDQQRLP-VRFVITSAGLVGSDGPTQC-GAFDI-TFMSCLPNMIVMAPS--DEDELVDMVATVASIDDRPVCFRYP 559 (722)
Q Consensus 487 ~~~a~~~lp-Vv~v~~~~G~~G~dG~TH~-~~~d~-a~~~~iP~l~V~~Ps--d~~E~~~~l~~a~~~~~~Pv~ir~~ 559 (722)
+.++..+|| ++++++..++ +.++++.. ...|+ ..++.+ ||.++.-. |..++...++.|.+ .++|++|...
T Consensus 172 ~~A~~~~L~~li~v~dnN~~-~~~~~~~~~~~~~~~~~~~a~-G~~~~~VdG~d~~~l~~al~~a~~-~~~P~vI~v~ 246 (624)
T PRK05899 172 SLAGHLKLGNLIVIYDDNRI-SIDGPTEGWFTEDVKKRFEAY-GWHVIEVDGHDVEAIDAAIEEAKA-STKPTLIIAK 246 (624)
T ss_pred HHHHHhCCCCEEEEEECCCC-cccccccccccccHHHHhccC-CCeEEEECCCCHHHHHHHHHHHHh-cCCCEEEEEE
Confidence 567788998 6666676664 33343322 12333 344554 88887767 89999999999876 4689998654
No 299
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=63.36 E-value=13 Score=33.79 Aligned_cols=43 Identities=35% Similarity=0.519 Sum_probs=24.1
Q ss_pred hhHhhcCceEE-eecCCCCH-HHHHHHHHHHHhcCCCCCEEEEEEe
Q 004946 323 TLFEELGLYYI-GPVDGHNI-EDLISVLQEVASLGSMGPVLVHVVT 366 (722)
Q Consensus 323 ~lfea~G~~~~-~~vdGhd~-~~l~~al~~a~~~~~~~P~lI~v~T 366 (722)
..++++|+.|+ -||++.++ .+-++.|.++.+. .++|+++||+|
T Consensus 51 ~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~-~~~Pvl~hC~s 95 (110)
T PF04273_consen 51 AAAEALGLQYVHIPVDGGAITEEDVEAFADALES-LPKPVLAHCRS 95 (110)
T ss_dssp HHHHHCT-EEEE----TTT--HHHHHHHHHHHHT-TTTSEEEE-SC
T ss_pred HHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHHh-CCCCEEEECCC
Confidence 45778888764 25665543 3445556655553 47899999998
No 300
>PTZ00089 transketolase; Provisional
Probab=63.11 E-value=49 Score=39.78 Aligned_cols=77 Identities=13% Similarity=0.127 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhcCCCC-EEEEEeCCCccCCCCCCcCc-HHHH-HHhcCCCCcEEEeeC----CHHHHHHHHHHHhhhCCC
Q 004946 480 RAYDQVVNDVDQQRLP-VRFVITSAGLVGSDGPTQCG-AFDI-TFMSCLPNMIVMAPS----DEDELVDMVATVASIDDR 552 (722)
Q Consensus 480 ra~dqi~~~~a~~~lp-Vv~v~~~~G~~G~dG~TH~~-~~d~-a~~~~iP~l~V~~Ps----d~~E~~~~l~~a~~~~~~ 552 (722)
.+++. ++.++..+|| ++++++.-+. .-+|+++-. .+++ ..+..+ ||.++.+. |..++...+..|....++
T Consensus 164 ~~~EA-l~~A~~~~L~nLi~i~d~N~~-~i~~~~~~~~~~~~~~~f~a~-G~~~i~v~dG~~D~~~l~~a~~~a~~~~~~ 240 (661)
T PTZ00089 164 VSQEA-LSLAGHLGLEKLIVLYDDNKI-TIDGNTDLSFTEDVEKKYEAY-GWHVIEVDNGNTDFDGLRKAIEEAKKSKGK 240 (661)
T ss_pred HHHHH-HHHHHHhCCCCEEEEEECCCc-ccccCcccccCccHHHHHHhc-CCcEEEeCCCCCCHHHHHHHHHHHHhcCCC
Confidence 34543 4678888997 6777777664 445666532 1222 356665 99999984 677777777777554468
Q ss_pred CEEEEec
Q 004946 553 PVCFRYP 559 (722)
Q Consensus 553 Pv~ir~~ 559 (722)
|++|...
T Consensus 241 P~~I~~~ 247 (661)
T PTZ00089 241 PKLIIVK 247 (661)
T ss_pred cEEEEEE
Confidence 9998653
No 301
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=62.77 E-value=41 Score=38.97 Aligned_cols=151 Identities=21% Similarity=0.271 Sum_probs=98.8
Q ss_pred chHHHHHHHHHHHHhcCCCEEEEecCCCCccchHHHHHhCCCceeecccchHHHHHHHHHHhcCCCeeEEEe--cHhhHH
Q 004946 402 TYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCII--PSAFLQ 479 (722)
Q Consensus 402 s~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f~~~~p~R~~d~GIaE~~av~~AaGlA~~G~~p~~~t--~~~Fl~ 479 (722)
.|..+|.++|.... -+=++|++.- .|+=|.-....+++=-..+=|.|..+.-||.|+|..-.+|++-+ +.+-..
T Consensus 9 ~~a~v~~eeL~r~G---V~~vvicPGS-RSTPLala~~~~~~i~~hv~~DERsagFfALGlAKas~rPVavi~TSGTA~A 84 (566)
T COG1165 9 LWARVFLEELARLG---VRDVVICPGS-RSTPLALAAAAHDAITVHVHIDERSAGFFALGLAKASKRPVAVICTSGTAVA 84 (566)
T ss_pred HHHHHHHHHHHHcC---CcEEEECCCC-CCcHHHHHHHhcCCeEEEEecccchHHHHHHhhhhhcCCCEEEEEcCcchhh
Confidence 45556655554433 3446676642 34556555566776566888999999999999999988888764 555555
Q ss_pred HHHHHHHHHHhcCCCCEEEEE-eCCC-ccCCCCCCcCcHHHHHHhcCCCCcEE--EeeCCHHHHHHHHHHHhh-------
Q 004946 480 RAYDQVVNDVDQQRLPVRFVI-TSAG-LVGSDGPTQCGAFDITFMSCLPNMIV--MAPSDEDELVDMVATVAS------- 548 (722)
Q Consensus 480 ra~dqi~~~~a~~~lpVv~v~-~~~G-~~G~dG~TH~~~~d~a~~~~iP~l~V--~~Psd~~E~~~~l~~a~~------- 548 (722)
..|. .+-.+.+.+.|.++.. ||.- +.+- ..-|.+.+..++.+-|+..+ =.|.+..++.+.+++...
T Consensus 85 Nl~P-AViEA~~srvpLIVLTADRP~EL~~~--GAnQaI~Q~~lfgs~v~~~~~L~~P~~~~~~~~~~~~~~~~~~~~a~ 161 (566)
T COG1165 85 NLYP-AVIEANLSRVPLIVLTADRPPELRGC--GANQAIDQTGLFGSYVRASIDLPLPEDDIEALWYLRTIASAAAQQAR 161 (566)
T ss_pred hccH-HHHhhhhcCCceEEEeCCCCHHHhcC--CCchhhhhhhhhcccchhhccCCCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 5563 3457889999977665 4431 1221 13577788888998888765 378888887776665433
Q ss_pred -hCCCCEEEEec
Q 004946 549 -IDDRPVCFRYP 559 (722)
Q Consensus 549 -~~~~Pv~ir~~ 559 (722)
...+||=|-.|
T Consensus 162 ~~~~GpVHiN~P 173 (566)
T COG1165 162 TPHAGPVHINVP 173 (566)
T ss_pred CCCCCceEecCC
Confidence 23456666443
No 302
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=62.45 E-value=14 Score=41.82 Aligned_cols=17 Identities=29% Similarity=0.362 Sum_probs=15.2
Q ss_pred CcCCCcchHHHHHHHHH
Q 004946 190 NAGHGCNSVSAGLGMAV 206 (722)
Q Consensus 190 ~~G~~G~~ls~A~G~A~ 206 (722)
|.|++|++||.|+|+++
T Consensus 415 g~g~mG~glp~aiGa~~ 431 (432)
T TIGR00173 415 GASGIDGTLSTALGIAL 431 (432)
T ss_pred chhhHHHHHHHHHHhhc
Confidence 56999999999999985
No 303
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=62.41 E-value=40 Score=40.51 Aligned_cols=58 Identities=12% Similarity=0.289 Sum_probs=39.0
Q ss_pred cCcCCC-cchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHH-HHhhhcCCCEEEEEECCCC
Q 004946 189 FNAGHG-CNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAM-SNAGYLDSNMIVILNDSRH 254 (722)
Q Consensus 189 ~~~G~~-G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAl-n~A~~~~~plivIv~dN~~ 254 (722)
|-+|.. .+.++.|.|||+. | -++|++++ ..|.. -+++-+ +.++..++|++++++..+.
T Consensus 401 fdvGIAEq~~vg~AaGLA~~----G-~kPvv~~f--s~Fl~-RA~DQI~~dval~~lpVv~v~~~aG~ 460 (677)
T PLN02582 401 FDVGIAEQHAVTFAAGLACE----G-LKPFCAIY--SSFLQ-RGYDQVVHDVDLQKLPVRFAMDRAGL 460 (677)
T ss_pred cccCcCHHHHHHHHHHHHHC----C-CeEEEEec--HHHHH-HHHHHHHHHHHhcCCCEEEEEECCCc
Confidence 445543 3456677777764 3 46666664 45654 677754 7778888999999987776
No 304
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=62.15 E-value=39 Score=28.56 Aligned_cols=58 Identities=22% Similarity=0.285 Sum_probs=40.2
Q ss_pred cEEEEEech-hhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcCCCeEEEEcCC
Q 004946 590 DVALLGYGA-MVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEG 649 (722)
Q Consensus 590 dv~lva~Gs-~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~~~vvvvEe~ 649 (722)
++.|++.+. ....|++.++.|++.|+++.+ |.+. +.+....-..-..+...+|++.+.
T Consensus 3 ~v~ii~~~~~~~~~a~~~~~~Lr~~g~~v~~-d~~~-~~~~~~~~~a~~~g~~~~iiig~~ 61 (91)
T cd00860 3 QVVVIPVTDEHLDYAKEVAKKLSDAGIRVEV-DLRN-EKLGKKIREAQLQKIPYILVVGDK 61 (91)
T ss_pred EEEEEeeCchHHHHHHHHHHHHHHCCCEEEE-ECCC-CCHHHHHHHHHHcCCCEEEEECcc
Confidence 567777765 447899999999999999977 4443 455554444344566678887764
No 305
>PRK12754 transketolase; Reviewed
Probab=61.67 E-value=51 Score=39.61 Aligned_cols=72 Identities=15% Similarity=0.169 Sum_probs=44.4
Q ss_pred HHHHhcCCCC-EEEEEeCCCccCCCCCCcCcH-HHH-HHhcCCCCcEEEee---CCHHHHHHHHHHHhhhCCCCEEEEec
Q 004946 486 VNDVDQQRLP-VRFVITSAGLVGSDGPTQCGA-FDI-TFMSCLPNMIVMAP---SDEDELVDMVATVASIDDRPVCFRYP 559 (722)
Q Consensus 486 ~~~~a~~~lp-Vv~v~~~~G~~G~dG~TH~~~-~d~-a~~~~iP~l~V~~P---sd~~E~~~~l~~a~~~~~~Pv~ir~~ 559 (722)
++.++..+|| ++++++.-++ .-||+|.... +|+ ..+++. ||.++.. .|..++...+..|....++|++|...
T Consensus 167 ~~~A~~~kL~nLi~ivD~N~~-~idg~~~~~~~~~~~~r~~a~-Gw~vi~vvDG~D~~ai~~A~~~a~~~~~~Pt~I~~~ 244 (663)
T PRK12754 167 CSLAGTLKLGKLIAFYDDNGI-SIDGHVEGWFTDDTAMRFEAY-GWHVIRGIDGHDADSIKRAVEEARAVTDKPSLLMCK 244 (663)
T ss_pred HHHHHHhCCCCEEEEEEcCCC-ccCcchhhccCccHHHHHHhc-CCeEEeeECCCCHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 4678889999 5677777775 4566665422 333 334444 7877653 34555555566554445789999754
No 306
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=61.12 E-value=27 Score=39.91 Aligned_cols=148 Identities=17% Similarity=0.172 Sum_probs=83.5
Q ss_pred HHHHHHHHHhc-C-CCEEEEecCCCCccchH--HHHHhCCC-ceeecccchHHHHHHHHHHhcC-CCeeEEEecHhhHHH
Q 004946 407 FIEALVMEAEK-D-KDIVVVHAGMEMDLSLQ--LFQEKFPE-RYFDVGMAEQHAVTFSAGLACG-GLKPFCIIPSAFLQR 480 (722)
Q Consensus 407 ~~~~L~~~~~~-d-~~iv~i~ad~~~~~~l~--~f~~~~p~-R~~d~GIaE~~av~~AaGlA~~-G~~p~~~t~~~Fl~r 480 (722)
+++.|-+.+.+ + ..++.+- |-+.|. ++..+.|+ |++.. -+|-++.-.|=|.|.. |+-.++.||+..-.-
T Consensus 6 ~G~YLf~RL~q~gvksvfgVP----GDFNL~LLD~l~~~~~lrwvGn-~NELNaAYAADGYAR~~Gi~a~VtTfgVGeLS 80 (561)
T KOG1184|consen 6 LGEYLFRRLVQAGVKTVFGVP----GDFNLSLLDKLYAVPGLRWVGN-CNELNAAYAADGYARSKGIGACVTTFGVGELS 80 (561)
T ss_pred HHHHHHHHHHHcCCceeEECC----CcccHHHHHHhhhcCCceeecc-cchhhhhhhhcchhhhcCceEEEEEeccchhh
Confidence 34444443332 2 3455443 445553 34445566 55544 5799999999999986 888888899888777
Q ss_pred HHHHHHHHHhc-CCCCEEEEEeCCCc--cCCCCCCcCc--HHHHH-HhcCCCCcE--EEeeCCHHHHHH----HHHHHhh
Q 004946 481 AYDQVVNDVDQ-QRLPVRFVITSAGL--VGSDGPTQCG--AFDIT-FMSCLPNMI--VMAPSDEDELVD----MVATVAS 548 (722)
Q Consensus 481 a~dqi~~~~a~-~~lpVv~v~~~~G~--~G~dG~TH~~--~~d~a-~~~~iP~l~--V~~Psd~~E~~~----~l~~a~~ 548 (722)
|++-| --++ -++||+.+...+.. .+.+=--||. .-|.. ++|..-++. +..=-|.+++.. +++.|+.
T Consensus 81 AlNGI--AGsYAE~vpVihIVG~Pnt~~q~t~~LLHHTLG~gDF~vf~rm~k~vsc~~a~I~~~e~A~~~ID~aI~~~~~ 158 (561)
T KOG1184|consen 81 ALNGI--AGAYAENVPVIHIVGVPNTNDQGTQRLLHHTLGNGDFTVFHRMFKKVTCYTAMINDIEDAPEQIDKAIRTALK 158 (561)
T ss_pred hhccc--chhhhhcCCEEEEECCCCcccccccchheeecCCCchHHHHHHHHhhhhHHhhhcCHhhhHHHHHHHHHHHHH
Confidence 77654 2223 48999998744332 1222233552 22222 333333321 122234455544 4455543
Q ss_pred hCCCCEEEEecCCC
Q 004946 549 IDDRPVCFRYPRGA 562 (722)
Q Consensus 549 ~~~~Pv~ir~~r~~ 562 (722)
..+||||-.|-..
T Consensus 159 -~~rPVYi~iP~n~ 171 (561)
T KOG1184|consen 159 -ESKPVYIGVPANL 171 (561)
T ss_pred -hcCCeEEEeeccc
Confidence 6889999988654
No 307
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=60.97 E-value=40 Score=40.23 Aligned_cols=58 Identities=17% Similarity=0.319 Sum_probs=37.3
Q ss_pred cCcCCC-cchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHH-HHhhhcCCCEEEEEECCCC
Q 004946 189 FNAGHG-CNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAM-SNAGYLDSNMIVILNDSRH 254 (722)
Q Consensus 189 ~~~G~~-G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAl-n~A~~~~~plivIv~dN~~ 254 (722)
|-+|.. .+.+++|.|+|+. | -+++++++ +.|.. .+++.+ +.++..++|++++++..+.
T Consensus 402 fdvGIAEq~~Vg~AaGLA~~----G-~rPvv~~f--s~Fl~-RA~DQI~~dva~~~lpV~~v~~~aG~ 461 (641)
T PLN02234 402 FDVGIAEQHAVTFAAGLACE----G-LKPFCTIY--SSFMQ-RAYDQVVHDVDLQKLPVRFAIDRAGL 461 (641)
T ss_pred cCCCcCHHHHHHHHHHHHHC----C-CeEEEEeh--HHHHH-HHHHHHHHHHhhcCCCEEEEEeCCcc
Confidence 445543 3356677777774 3 35555554 45543 666665 5667788999999977775
No 308
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=60.79 E-value=72 Score=35.28 Aligned_cols=31 Identities=26% Similarity=0.367 Sum_probs=24.1
Q ss_pred CceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEEEE
Q 004946 329 GLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHV 364 (722)
Q Consensus 329 G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v 364 (722)
|+.++.| .|..++...++.+.+ .++|++|..
T Consensus 165 nl~V~~P---ad~~e~~~~l~~a~~--~~gPv~ir~ 195 (356)
T PLN02683 165 GLKVLAP---YSSEDARGLLKAAIR--DPDPVVFLE 195 (356)
T ss_pred CCEEEEe---CCHHHHHHHHHHHHh--CCCcEEEEE
Confidence 6777778 677788888888876 478999863
No 309
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=59.75 E-value=50 Score=29.27 Aligned_cols=67 Identities=19% Similarity=0.294 Sum_probs=46.6
Q ss_pred CcEEEEEechhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhc----CCCeEEEEcCCCCCChHHH
Q 004946 589 KDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQ----NHTFLITVEEGSIGGFGSH 657 (722)
Q Consensus 589 ~dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~----~~~~vvvvEe~~~gG~gs~ 657 (722)
.+|+|.+. +..+.|.+|.+.|.+.|+..+++|+.. .|--.+....+.+ .+=+.|++.....||+...
T Consensus 8 ~~Vvvysk-~~Cp~C~~ak~~L~~~~i~~~~vdid~-~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl 78 (99)
T TIGR02189 8 KAVVIFSR-SSCCMCHVVKRLLLTLGVNPAVHEIDK-EPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLENV 78 (99)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHcCCCCEEEEcCC-CccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHHH
Confidence 56777776 667899999999999999999999874 2322233233322 2336778887778998754
No 310
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=58.64 E-value=37 Score=29.19 Aligned_cols=57 Identities=23% Similarity=0.311 Sum_probs=40.7
Q ss_pred cEEEEEech----hhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcCCCeEEEEcC
Q 004946 590 DVALLGYGA----MVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEE 648 (722)
Q Consensus 590 dv~lva~Gs----~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~~~vvvvEe 648 (722)
+|+|+..|. ....|.+.++.|++.|+.+.+-+ . -..+....-.....+...++++-+
T Consensus 1 qv~Ii~~~~~~~~~~~~a~~l~~~L~~~gi~v~~d~-~-~~~~~k~~~~a~~~g~p~~iiiG~ 61 (94)
T PF03129_consen 1 QVVIIPVGKKDEEIIEYAQELANKLRKAGIRVELDD-S-DKSLGKQIKYADKLGIPFIIIIGE 61 (94)
T ss_dssp SEEEEESSCSHHHHHHHHHHHHHHHHHTTSEEEEES-S-SSTHHHHHHHHHHTTESEEEEEEH
T ss_pred CEEEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEEC-C-CCchhHHHHHHhhcCCeEEEEECc
Confidence 578899998 44789999999999999998877 3 344454444444456677777654
No 311
>PRK10638 glutaredoxin 3; Provisional
Probab=58.47 E-value=42 Score=28.36 Aligned_cols=65 Identities=18% Similarity=0.203 Sum_probs=40.5
Q ss_pred cEEEEEechhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhc-CCCeEEEEcCCCCCChHH
Q 004946 590 DVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQ-NHTFLITVEEGSIGGFGS 656 (722)
Q Consensus 590 dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~-~~~~vvvvEe~~~gG~gs 656 (722)
+|+|.+. +....|.+|.+.|+++|+..+++|+..-.... +.+.+... .+=.+|+++....||+.+
T Consensus 3 ~v~ly~~-~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~-~~l~~~~g~~~vP~i~~~g~~igG~~~ 68 (83)
T PRK10638 3 NVEIYTK-ATCPFCHRAKALLNSKGVSFQEIPIDGDAAKR-EEMIKRSGRTTVPQIFIDAQHIGGCDD 68 (83)
T ss_pred cEEEEEC-CCChhHHHHHHHHHHcCCCcEEEECCCCHHHH-HHHHHHhCCCCcCEEEECCEEEeCHHH
Confidence 4555553 34478999999999999999999986321111 22222221 222566677656899854
No 312
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=57.73 E-value=28 Score=38.58 Aligned_cols=73 Identities=15% Similarity=0.153 Sum_probs=44.6
Q ss_pred HHHHHHhcCCCCEEEEEeCCCccCCCCCCc--CcHHHHH-HhcCCCCcEEEeeCCHHHHHHHHHHHhh--hCCCCEEEEe
Q 004946 484 QVVNDVDQQRLPVRFVITSAGLVGSDGPTQ--CGAFDIT-FMSCLPNMIVMAPSDEDELVDMVATVAS--IDDRPVCFRY 558 (722)
Q Consensus 484 qi~~~~a~~~lpVv~v~~~~G~~G~dG~TH--~~~~d~a-~~~~iP~l~V~~Psd~~E~~~~l~~a~~--~~~~Pv~ir~ 558 (722)
.-+|.++..++|++|++.+.++ +-.-++. +...+++ ....+|++.| .=.|..++...+..|++ +.++|++|-.
T Consensus 179 Ealn~A~~~~lPvvfvveNN~~-aist~~~~~~~~~~~~~~~~~~p~~~V-DG~D~~av~~a~~~A~~~aR~~gP~lIe~ 256 (362)
T PLN02269 179 EALNIAALWDLPVIFVCENNHY-GMGTAEWRAAKSPAYYKRGDYVPGLKV-DGMDVLAVKQACKFAKEHALSNGPIVLEM 256 (362)
T ss_pred HHHHHhhccCcCEEEEEeCCCE-eccCchhhhccchHHHHhhcCCCeEEE-CCCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 3457889999999999987774 2111211 1112221 1234676654 55677777777777764 2378999865
No 313
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=57.26 E-value=90 Score=30.32 Aligned_cols=52 Identities=13% Similarity=0.070 Sum_probs=31.2
Q ss_pred chHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCC
Q 004946 196 NSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR 253 (722)
Q Consensus 196 ~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~ 253 (722)
.+.-+|-|.|.+. ++-..+++..|=|..+ ..-++.+|...+.||++|.-+..
T Consensus 49 ~A~~mA~gyar~t---g~~~v~~~t~GpG~~n---~~~~l~~A~~~~~Pvl~I~g~~~ 100 (164)
T cd07039 49 AAAFAASAEAKLT---GKLGVCLGSSGPGAIH---LLNGLYDAKRDRAPVLAIAGQVP 100 (164)
T ss_pred HHHHHHHHHHHHh---CCCEEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEecCCc
Confidence 3444666766653 3333334444555553 44578888888899999975433
No 314
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=57.05 E-value=30 Score=33.64 Aligned_cols=55 Identities=18% Similarity=0.310 Sum_probs=43.8
Q ss_pred EEEEEechhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcCCCeEEEEcC
Q 004946 591 VALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEE 648 (722)
Q Consensus 591 v~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~~~vvvvEe 648 (722)
++|++-|..-....++++.|++.|+.+=.|-.. ..|.+.|..++.+...|+++++
T Consensus 110 ~vviTdG~s~d~~~~~a~~lr~~gv~i~~vG~~---~~~~~eL~~ias~p~~vf~v~~ 164 (165)
T cd01481 110 LVLITGGKSQDDVERPAVALKRAGIVPFAIGAR---NADLAELQQIAFDPSFVFQVSD 164 (165)
T ss_pred EEEEeCCCCcchHHHHHHHHHHCCcEEEEEeCC---cCCHHHHHHHhCCCccEEEecC
Confidence 457777777677888999999999877666554 4689999999988888998875
No 315
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=55.77 E-value=50 Score=35.31 Aligned_cols=60 Identities=20% Similarity=0.310 Sum_probs=43.0
Q ss_pred cCcCCCcc-hHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhh-cCCCEEEEEECCCCC
Q 004946 189 FNAGHGCN-SVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGY-LDSNMIVILNDSRHS 255 (722)
Q Consensus 189 ~~~G~~G~-~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~-~~~plivIv~dN~~~ 255 (722)
|..|.+=+ .++.|.|+|++- ..+.++ +=+.|-.+-+||-+.+.-. .++|+.+|..+-|.+
T Consensus 52 ~NvGIaEQ~mvg~AAGLA~~G-----k~Pfv~--tfa~F~s~Ra~EQir~~iay~~lnVKiv~t~~G~t 113 (312)
T COG3958 52 FNVGIAEQDMVGTAAGLALAG-----KKPFVS--TFAAFLSRRAWEQIRNSIAYNNLNVKIVATHAGVT 113 (312)
T ss_pred eecchHHHHHHHHHHHHHhcC-----CCceee--chHHHHHHHHHHHHHHHhhhccCCeEEEEecCCcc
Confidence 55666544 567888888862 233444 4478888889999877755 459999999998873
No 316
>PRK12753 transketolase; Reviewed
Probab=53.61 E-value=71 Score=38.44 Aligned_cols=72 Identities=15% Similarity=0.138 Sum_probs=44.9
Q ss_pred HHHHhcCCCC-EEEEEeCCCccCCCCCCcCcH-HHH-HHhcCCCCcEEEeeCCH---HHHHHHHHHHhhhCCCCEEEEec
Q 004946 486 VNDVDQQRLP-VRFVITSAGLVGSDGPTQCGA-FDI-TFMSCLPNMIVMAPSDE---DELVDMVATVASIDDRPVCFRYP 559 (722)
Q Consensus 486 ~~~~a~~~lp-Vv~v~~~~G~~G~dG~TH~~~-~d~-a~~~~iP~l~V~~Psd~---~E~~~~l~~a~~~~~~Pv~ir~~ 559 (722)
++.++..+|| ++++.+.-++ .-+|+++... +++ ..++.. ||.++.+.|. .++...+..|....++|++|...
T Consensus 167 ~~~A~~~kL~nLi~ivd~N~~-~i~~~~~~~~~~~~~~~f~a~-Gw~~~~~vDGhD~~~i~~a~~~a~~~~~~P~~I~~~ 244 (663)
T PRK12753 167 CSLAGTLGLGKLIGFYDHNGI-SIDGETEGWFTDDTAKRFEAY-HWHVIHEIDGHDPQAIKEAILEAQSVKDKPSLIICR 244 (663)
T ss_pred HHHHHHHCCCCEEEEEECCCC-cCCCChhhhcChhHHHHHHHc-CCeEEceeCCCCHHHHHHHHHHHHHCCCCeEEEEEE
Confidence 4678889997 6767777664 3445554321 232 345555 8988865454 55555566665445789998654
No 317
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=53.05 E-value=71 Score=25.95 Aligned_cols=69 Identities=17% Similarity=0.217 Sum_probs=43.7
Q ss_pred cEEEEEechhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhc-CCCeEEEEcCCCCCChHHHHHHHH
Q 004946 590 DVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQ-NHTFLITVEEGSIGGFGSHVSHFI 662 (722)
Q Consensus 590 dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~-~~~~vvvvEe~~~gG~gs~v~~~l 662 (722)
+|+|.+ -+....|.+|.+.|++.|+..+.+|+.. .+ +.+.+..... .+=++|+++....||+. +|.++|
T Consensus 2 ~v~lys-~~~Cp~C~~ak~~L~~~~i~~~~~~v~~-~~-~~~~~~~~~g~~~vP~ifi~g~~igg~~-~l~~~l 71 (72)
T cd03029 2 SVSLFT-KPGCPFCARAKAALQENGISYEEIPLGK-DI-TGRSLRAVTGAMTVPQVFIDGELIGGSD-DLEKYF 71 (72)
T ss_pred eEEEEE-CCCCHHHHHHHHHHHHcCCCcEEEECCC-Ch-hHHHHHHHhCCCCcCeEEECCEEEeCHH-HHHHHh
Confidence 355544 4677889999999999999999999763 22 3333433322 22356677766678854 344443
No 318
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=51.79 E-value=61 Score=29.65 Aligned_cols=58 Identities=21% Similarity=0.193 Sum_probs=40.1
Q ss_pred CcEEEEEec--hh-hHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcCCCeEEEEcCC
Q 004946 589 KDVALLGYG--AM-VQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEG 649 (722)
Q Consensus 589 ~dv~lva~G--s~-v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~~~vvvvEe~ 649 (722)
.++.|++.+ .. ...+++.++.|++.|+++.+- .+ +.+..+.-.....+.+.++++.+.
T Consensus 27 ~~v~Ii~~~~~~~~~~~a~~la~~LR~~gi~v~~d-~~--~sl~kqlk~A~k~g~~~~iiiG~~ 87 (121)
T cd00858 27 IKVAVLPLVKRDELVEIAKEISEELRELGFSVKYD-DS--GSIGRRYARQDEIGTPFCVTVDFD 87 (121)
T ss_pred cEEEEEecCCcHHHHHHHHHHHHHHHHCCCEEEEe-CC--CCHHHHHHHhHhcCCCEEEEECcC
Confidence 478888888 44 468889999999999999873 33 455554433334556677777664
No 319
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=50.88 E-value=45 Score=27.63 Aligned_cols=61 Identities=20% Similarity=0.187 Sum_probs=40.9
Q ss_pred chhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhc-CCCeEEEEcCCCCCChHHHH
Q 004946 597 GAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQ-NHTFLITVEEGSIGGFGSHV 658 (722)
Q Consensus 597 Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~-~~~~vvvvEe~~~gG~gs~v 658 (722)
-+....|.+|.+.|++.|+..+.+|+..- |-..+.+.+... .+=++|+++....||+.+..
T Consensus 6 ~~~Cp~C~~a~~~L~~~~i~~~~~di~~~-~~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~ 67 (79)
T TIGR02181 6 KPYCPYCTRAKALLSSKGVTFTEIRVDGD-PALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLY 67 (79)
T ss_pred cCCChhHHHHHHHHHHcCCCcEEEEecCC-HHHHHHHHHHhCCCCcCEEEECCEEEcChHHHH
Confidence 35668899999999999999999998642 211222333222 22367788877789987553
No 320
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=50.85 E-value=1.3e+02 Score=28.72 Aligned_cols=54 Identities=17% Similarity=0.284 Sum_probs=34.4
Q ss_pred CCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCC
Q 004946 192 GHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR 253 (722)
Q Consensus 192 G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~ 253 (722)
-|=..+..+|.|.+.+ +.+ .++..-|-|..+ ...+|..|...+.||++|+-+-.
T Consensus 48 ~~E~~A~~~A~g~~r~----~~~-v~~~~~gpG~~n---~~~~l~~a~~~~~P~v~i~g~~~ 101 (160)
T cd07034 48 ESEHAAAEAAIGASAA----GAR-AMTATSGPGLNL---MAEALYLAAGAELPLVIVVAQRP 101 (160)
T ss_pred CCHHHHHHHHHHHHhh----CCc-EEEeeCcchHHH---HHHHHHHHHhCCCCEEEEEeeCC
Confidence 3444555566666654 222 444555666653 56788888887899999986644
No 321
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=49.82 E-value=1.2e+02 Score=32.83 Aligned_cols=89 Identities=15% Similarity=0.094 Sum_probs=51.4
Q ss_pred eeEEEec--HhhHHHHHHHHHHHHhcCCCCEEEEEeCCCccCCCCCCc-----CcHHHHHHhcCCCCcEEEeeCCHHHHH
Q 004946 468 KPFCIIP--SAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQ-----CGAFDITFMSCLPNMIVMAPSDEDELV 540 (722)
Q Consensus 468 ~p~~~t~--~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH-----~~~~d~a~~~~iP~l~V~~Psd~~E~~ 540 (722)
+++++++ ..|.+-.+-+-++.++..++|+++++.+.++ |...++. ....+++-.-.+|++.| .=.|+.++.
T Consensus 133 ~~vv~~~GDGa~~~g~~~ealn~A~~~~lPvi~vv~NN~y-g~s~~~~~~~~~~~~a~~A~a~G~~~~~V-dg~d~~av~ 210 (315)
T TIGR03182 133 NVTACFFGDGAANQGQFYESFNMAALWKLPVIFVIENNLY-AMGTSVERSSSVTDLYKRGESFGIPGERV-DGMDVLAVR 210 (315)
T ss_pred CEEEEEeCCCcccccHHHHHHHHhhccCcCEEEEEEcCCc-cccCCHHHHhCCcCHHHHHHhCCCCEEEE-CCCCHHHHH
Confidence 4555554 4454322224457788899999999876663 3222211 12334443345666543 444677777
Q ss_pred HHHHHHhh---hCCCCEEEEe
Q 004946 541 DMVATVAS---IDDRPVCFRY 558 (722)
Q Consensus 541 ~~l~~a~~---~~~~Pv~ir~ 558 (722)
..++.|++ ..++|++|-.
T Consensus 211 ~a~~~A~~~ar~~~gP~lIe~ 231 (315)
T TIGR03182 211 EAAKEAVERARSGKGPILLEM 231 (315)
T ss_pred HHHHHHHHHHHccCCCEEEEE
Confidence 77777764 2467999854
No 322
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism]
Probab=49.29 E-value=1.5e+02 Score=30.24 Aligned_cols=95 Identities=19% Similarity=0.234 Sum_probs=54.6
Q ss_pred CcEEEEEechhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcCCCeEEEEcCCCCCChHHHHHHHHHhcCCC
Q 004946 589 KDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIALDGLL 668 (722)
Q Consensus 589 ~dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~ 668 (722)
.++.||--=|.++.| +.+| |+...=+.+.++.+-+.+.++.++....+++++-+... --.+|+.+|.++|+-
T Consensus 95 ~~v~iIPgiSS~q~a---~ARl---g~~~~~~~~islHgr~~~~l~~~~~~~~~~vil~~~~~--~P~~IA~~L~~~G~~ 166 (210)
T COG2241 95 EEVEIIPGISSVQLA---AARL---GWPLQDTEVISLHGRPVELLRPLLENGRRLVILTPDDF--GPAEIAKLLTENGIG 166 (210)
T ss_pred cceEEecChhHHHHH---HHHh---CCChHHeEEEEecCCCHHHHHHHHhCCceEEEeCCCCC--CHHHHHHHHHhCCCC
Confidence 466666644444433 2233 55443333334447778888888777777777777652 257899999999974
Q ss_pred CCCCce-EEEecCCccccCCCHHH
Q 004946 669 DSGVKW-RPIVLPDNYIEHASPTQ 691 (722)
Q Consensus 669 ~~~~~v-~~ig~~d~f~~~g~~~~ 691 (722)
+..+-| -+++.+|+=+..++.++
T Consensus 167 ~~~~~VlE~L~~~~Eri~~~~~~~ 190 (210)
T COG2241 167 DSRVTVLENLGYPDERITDGTAED 190 (210)
T ss_pred CceEEEEcccCCCchhhhcCchhh
Confidence 222222 25566665444444433
No 323
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=49.25 E-value=1e+02 Score=37.03 Aligned_cols=52 Identities=13% Similarity=0.013 Sum_probs=36.1
Q ss_pred chHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCC
Q 004946 196 NSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRH 254 (722)
Q Consensus 196 ~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~ 254 (722)
+.+++|.|+|+. +.-+++++.+ ..|.. ..++++..++..++|+++|....+.
T Consensus 407 ~mv~~AaGlA~~----gG~~p~~~tf--~~F~~-r~~~~ir~~a~~~lpV~~v~th~g~ 458 (653)
T TIGR00232 407 AMGAIMNGIALH----GGFKPYGGTF--LMFVD-YARPAIRLAALMKLPVIYVYTHDSI 458 (653)
T ss_pred HHHHHHHHHHHc----CCCeEEEEEh--HHHHH-HHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 355677788773 2224444444 36654 7789999999999999999977665
No 324
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=48.43 E-value=42 Score=30.62 Aligned_cols=48 Identities=21% Similarity=0.272 Sum_probs=37.5
Q ss_pred EEEEEechhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcCC
Q 004946 591 VALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNH 640 (722)
Q Consensus 591 v~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~ 640 (722)
++|.+. .....|.+|.+.|+++|+..+++|+.- .|++.+.+.++++..
T Consensus 2 i~iy~~-p~C~~crkA~~~L~~~gi~~~~~d~~~-~p~s~~eL~~~l~~~ 49 (113)
T cd03033 2 IIFYEK-PGCANNARQKALLEAAGHEVEVRDLLT-EPWTAETLRPFFGDL 49 (113)
T ss_pred EEEEEC-CCCHHHHHHHHHHHHcCCCcEEeehhc-CCCCHHHHHHHHHHc
Confidence 444433 345678899999999999999999985 788998888877643
No 325
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=47.93 E-value=42 Score=31.62 Aligned_cols=65 Identities=15% Similarity=0.165 Sum_probs=42.5
Q ss_pred hhHHHHHHHHHHHhcCCcEEEeecCcc-ccc-------------hHHHHHHHhcCCCeEEEEcCCCCCChHHHHHHHHH
Q 004946 599 MVQNCLKARALLSKLGIDVTVADARFC-KPL-------------DIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIA 663 (722)
Q Consensus 599 ~v~~aleAa~~L~~~Gi~v~Vidl~~l-kPl-------------d~e~i~~~~~~~~~vvvvEe~~~gG~gs~v~~~l~ 663 (722)
....+..+++.|++.|++++++|++-. .|+ |.+.+.+.+...+.+|++=.-+.|++.+.+..++.
T Consensus 16 t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~sP~y~~~~s~~lK~~lD 94 (152)
T PF03358_consen 16 TRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFASPVYNGSVSGQLKNFLD 94 (152)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEEEEEBTTBE-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEEEeecEEcCcCChhhhHHHH
Confidence 445666777788888999999999976 222 22344555666777777666555667666655553
No 326
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=47.93 E-value=1.2e+02 Score=34.74 Aligned_cols=30 Identities=23% Similarity=0.392 Sum_probs=23.1
Q ss_pred CceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEEE
Q 004946 329 GLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVH 363 (722)
Q Consensus 329 G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~ 363 (722)
|+.++.| .|..++...|+.+.+ .++|+++.
T Consensus 280 gl~V~~P---~d~~d~~~ll~~ai~--~~~Pv~il 309 (464)
T PRK11892 280 GLKVVAP---YSAADAKGLLKAAIR--DPNPVIFL 309 (464)
T ss_pred CCEEEEe---CCHHHHHHHHHHHhh--CCCcEEEE
Confidence 7788778 677777888888776 47899874
No 327
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=47.85 E-value=1.7e+02 Score=28.45 Aligned_cols=55 Identities=22% Similarity=0.183 Sum_probs=32.8
Q ss_pred CCCcchHHHHHHHHHHHHHcCCCCeEEEEecC--CCcccchHHHHHHHhhhcCCCEEEEEECCCC
Q 004946 192 GHGCNSVSAGLGMAVARDIKGKRECIVTVISN--GTTMAGQAYEAMSNAGYLDSNMIVILNDSRH 254 (722)
Q Consensus 192 G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGD--Ga~~~G~~~EAln~A~~~~~plivIv~dN~~ 254 (722)
-|=..+..+|.|.+.+. ++..+|+.-= |.+ ...-+|..|...+.||++|.-+-..
T Consensus 46 ~~E~~A~~~A~g~ar~~-----g~~~v~~~~~GpG~~---n~~~~l~~A~~~~~Pvl~i~g~~~~ 102 (172)
T PF02776_consen 46 RHEQGAAFMADGYARAT-----GRPGVVIVTSGPGAT---NALTGLANAYADRIPVLVITGQRPS 102 (172)
T ss_dssp SSHHHHHHHHHHHHHHH-----SSEEEEEEETTHHHH---TTHHHHHHHHHTT-EEEEEEEESSG
T ss_pred cCcchhHHHHHHHHHhh-----ccceEEEeecccchH---HHHHHHhhcccceeeEEEEecccch
Confidence 34445566777777653 4555555543 333 3445677777777999999866553
No 328
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=47.67 E-value=82 Score=26.08 Aligned_cols=56 Identities=18% Similarity=0.246 Sum_probs=35.6
Q ss_pred cEEEEEechh-hHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHh-cCCCeEEEEcC
Q 004946 590 DVALLGYGAM-VQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELC-QNHTFLITVEE 648 (722)
Q Consensus 590 dv~lva~Gs~-v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~-~~~~~vvvvEe 648 (722)
+|.|++.+.. ...|++.+..|++.|+.+.+.... +.++. .+.... .+...++++.+
T Consensus 3 ~v~i~~~~~~~~~~a~~i~~~Lr~~g~~v~~~~~~--~~~~~-~~~~a~~~~~~~~i~i~~ 60 (91)
T cd00859 3 DVYVVPLGEGALSEALELAEQLRDAGIKAEIDYGG--RKLKK-QFKYADRSGARFAVILGE 60 (91)
T ss_pred cEEEEEcChHHHHHHHHHHHHHHHCCCEEEEecCC--CCHHH-HHHHHHHcCCCEEEEEcH
Confidence 6778877764 467999999999999998774432 23433 333332 33455666654
No 329
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=47.63 E-value=55 Score=37.19 Aligned_cols=91 Identities=12% Similarity=0.076 Sum_probs=47.6
Q ss_pred CeeEEEecHh--hHHHHHHHHHHHHhcCCCCEEEEEeCCCc-cCC--CCCCcC-cHHHHHHhcCCCCcEEEeeCCHHHHH
Q 004946 467 LKPFCIIPSA--FLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGS--DGPTQC-GAFDITFMSCLPNMIVMAPSDEDELV 540 (722)
Q Consensus 467 ~~p~~~t~~~--Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~--dG~TH~-~~~d~a~~~~iP~l~V~~Psd~~E~~ 540 (722)
-+++++++.+ +.+-.+-+-++.++..++||+|++.+.+. .|. .-.|.. .....+-.-.+|++.| .=.|..++.
T Consensus 223 ~~vvv~~~GDGa~~eG~f~EaLn~A~~~~LPvIfVV~NN~yaig~~~~~~t~~~dia~~A~a~G~~~~~V-DG~D~~av~ 301 (433)
T PLN02374 223 DDVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHV-DGMDVLKVR 301 (433)
T ss_pred CCEEEEEECCCccccChHHHHHHHHHHhCCCEEEEEeCCCEeecceeeeccCCCCHHHHHHhcCCcEEEE-CCCCHHHHH
Confidence 3456666544 33222223457888999999999966652 121 001111 1223333334666654 334556555
Q ss_pred HHHHHHhh---hCCCCEEEEe
Q 004946 541 DMVATVAS---IDDRPVCFRY 558 (722)
Q Consensus 541 ~~l~~a~~---~~~~Pv~ir~ 558 (722)
..+..|++ ..++|++|-.
T Consensus 302 ~a~~~A~~~Ar~g~gP~LIe~ 322 (433)
T PLN02374 302 EVAKEAIERARRGEGPTLVEC 322 (433)
T ss_pred HHHHHHHHHHHHcCCCEEEEE
Confidence 54455544 2468999854
No 330
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=47.57 E-value=1.4e+02 Score=36.13 Aligned_cols=58 Identities=14% Similarity=0.288 Sum_probs=39.8
Q ss_pred cCcCCC-cchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHH-hhhcCCCEEEEEECCCC
Q 004946 189 FNAGHG-CNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSN-AGYLDSNMIVILNDSRH 254 (722)
Q Consensus 189 ~~~G~~-G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~-A~~~~~plivIv~dN~~ 254 (722)
|-+|.. .+.++.|.|||.. | -++|+++. ..|.+ -+|+-+.+ ++.+++|+.++++.-+.
T Consensus 426 fDvGIAEQhaVt~AAGLA~~----G-~kPvv~iy--stFlq-RAyDQI~~Dval~~lpV~~vid~aGl 485 (701)
T PLN02225 426 FNVGMAEQHAVTFSAGLSSG----G-LKPFCIIP--SAFLQ-RAYDQVVHDVDRQRKAVRFVITSAGL 485 (701)
T ss_pred cccCccHHHHHHHHHHHHHC----C-CEEEEEee--hhHHH-HHHHHHHHHHHhhcCCceEEEECCcc
Confidence 455543 3466778888763 3 47788888 46765 77776655 67788999999877554
No 331
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=46.45 E-value=48 Score=32.57 Aligned_cols=54 Identities=26% Similarity=0.328 Sum_probs=38.6
Q ss_pred eCCcEEEEEechhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcCCCeEEEEcC
Q 004946 587 EGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEE 648 (722)
Q Consensus 587 eG~dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~~~vvvvEe 648 (722)
+|++++||+.|.++... +++.|.++|.++.+++-.+ +.+.+.++..+.||+.-.
T Consensus 43 ~gk~vlViG~G~~~G~~--~a~~L~~~g~~V~v~~r~~------~~l~~~l~~aDiVIsat~ 96 (168)
T cd01080 43 AGKKVVVVGRSNIVGKP--LAALLLNRNATVTVCHSKT------KNLKEHTKQADIVIVAVG 96 (168)
T ss_pred CCCEEEEECCcHHHHHH--HHHHHhhCCCEEEEEECCc------hhHHHHHhhCCEEEEcCC
Confidence 46789999999886643 3566777899888888542 455667777777765443
No 332
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=45.62 E-value=77 Score=27.01 Aligned_cols=58 Identities=22% Similarity=0.226 Sum_probs=39.1
Q ss_pred cEEEEEech----hhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcCCCeEEEEcCC
Q 004946 590 DVALLGYGA----MVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEG 649 (722)
Q Consensus 590 dv~lva~Gs----~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~~~vvvvEe~ 649 (722)
+++|+..+. ....|++.+..|++.|+++.+ |.+. +.+....-..-..+...++++-+.
T Consensus 3 qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~-d~~~-~~l~k~i~~a~~~g~~~~iiiG~~ 64 (94)
T cd00861 3 DVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLL-DDRN-ERPGVKFADADLIGIPYRIVVGKK 64 (94)
T ss_pred EEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEE-ECCC-CCcccchhHHHhcCCCEEEEECCc
Confidence 467787765 457899999999999999976 5442 344444433334566777777654
No 333
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=42.73 E-value=1.1e+02 Score=33.65 Aligned_cols=91 Identities=15% Similarity=0.252 Sum_probs=53.3
Q ss_pred eeEEEecHhhHHH--HHHHHHHHHhcCCCC-EEEEEeCCCccCCCCCCcC-cHHHH-HHhcCCCCcEEEee---CCHHHH
Q 004946 468 KPFCIIPSAFLQR--AYDQVVNDVDQQRLP-VRFVITSAGLVGSDGPTQC-GAFDI-TFMSCLPNMIVMAP---SDEDEL 539 (722)
Q Consensus 468 ~p~~~t~~~Fl~r--a~dqi~~~~a~~~lp-Vv~v~~~~G~~G~dG~TH~-~~~d~-a~~~~iP~l~V~~P---sd~~E~ 539 (722)
+.+|-+---=+|. .++. +..++..+|. ++++.|.-++ ..||.|-. ..+|+ .-+++. ||.|+.- -|.+++
T Consensus 145 ~vy~l~GDGel~EG~~~EA-~~~A~~~~L~nLi~i~D~N~~-q~dg~~~~~~~~~~~~k~~a~-Gw~v~~v~dGhd~~~i 221 (332)
T PF00456_consen 145 RVYVLMGDGELQEGSVWEA-ASLAGHYKLDNLIVIYDSNGI-QIDGPTDIVFSEDIAKKFEAF-GWNVIEVCDGHDVEAI 221 (332)
T ss_dssp -EEEEEEHHHHHSHHHHHH-HHHHHHTT-TTEEEEEEEESE-ETTEEGGGTHHSHHHHHHHHT-T-EEEEEEETTBHHHH
T ss_pred eEEEEecCccccchhhHHH-HHHHHHhCCCCEEEEEecCCc-ccCCCcccccchHHHHHHHHh-hhhhcccccCcHHHHH
Confidence 4555553333543 3433 3566778886 6667777665 45676643 12333 335554 8999876 678888
Q ss_pred HHHHHHHhhhCCCCEEEEecCC
Q 004946 540 VDMVATVASIDDRPVCFRYPRG 561 (722)
Q Consensus 540 ~~~l~~a~~~~~~Pv~ir~~r~ 561 (722)
...+..|-...++|++|.....
T Consensus 222 ~~A~~~a~~~~~kP~~Ii~~Tv 243 (332)
T PF00456_consen 222 YAAIEEAKASKGKPTVIIARTV 243 (332)
T ss_dssp HHHHHHHHHSTSS-EEEEEEE-
T ss_pred HHHHHHHHhcCCCCceeecceE
Confidence 8888888654588999977543
No 334
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=42.40 E-value=1e+02 Score=26.02 Aligned_cols=58 Identities=24% Similarity=0.221 Sum_probs=38.7
Q ss_pred cEEEEEech----hhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcCCCeEEEEcCC
Q 004946 590 DVALLGYGA----MVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEG 649 (722)
Q Consensus 590 dv~lva~Gs----~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~~~vvvvEe~ 649 (722)
++.|+..+. ....|++.++.|++.|+.+.+-+ .. +.+....-.....+...++++.+.
T Consensus 3 ~v~ii~~~~~~~~~~~~a~~~~~~Lr~~g~~v~~~~-~~-~~~~k~~~~a~~~g~~~~iiig~~ 64 (94)
T cd00738 3 DVAIVPLTDPRVEAREYAQKLLNALLANGIRVLYDD-RE-RKIGKKFREADLRGVPFAVVVGED 64 (94)
T ss_pred EEEEEECCCCcHHHHHHHHHHHHHHHHCCCEEEecC-CC-cCHhHHHHHHHhCCCCEEEEECCC
Confidence 567777775 45788899999999999888644 22 455554433333455677777763
No 335
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=42.14 E-value=1.5e+02 Score=29.61 Aligned_cols=68 Identities=12% Similarity=0.152 Sum_probs=43.7
Q ss_pred chhhHHHHHHHHHHHh-cCCcEEEeecCccccchH--------------HHHHHHhcCCCeEEEEcCCCCCChHHHHHHH
Q 004946 597 GAMVQNCLKARALLSK-LGIDVTVADARFCKPLDI--------------KLVRELCQNHTFLITVEEGSIGGFGSHVSHF 661 (722)
Q Consensus 597 Gs~v~~aleAa~~L~~-~Gi~v~Vidl~~lkPld~--------------e~i~~~~~~~~~vvvvEe~~~gG~gs~v~~~ 661 (722)
|+.-..|.++++.+++ .|+++++++++-..|-+. .. .+.+...+.||+.=.-+.|++...+..+
T Consensus 13 G~T~~lA~~ia~g~~~~~G~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~aD~ii~gsPty~g~~~~~lk~f 91 (200)
T PRK03767 13 GHIETMAEAVAEGAREVAGAEVTIKRVPETVPEEVAKKAGGKTDQAAPVAT-PDELADYDAIIFGTPTRFGNMAGQMRNF 91 (200)
T ss_pred CHHHHHHHHHHHHHhhcCCcEEEEEeccccCCHHHHHhcCCCcccCCCccC-HHHHHhCCEEEEEecccCCCchHHHHHH
Confidence 4455567777778877 899999999974333111 11 2334456666655554568888888888
Q ss_pred HHhc
Q 004946 662 IALD 665 (722)
Q Consensus 662 l~~~ 665 (722)
+..-
T Consensus 92 ld~~ 95 (200)
T PRK03767 92 LDQT 95 (200)
T ss_pred HHHh
Confidence 7764
No 336
>PRK15473 cbiF cobalt-precorrin-4 C(11)-methyltransferase; Provisional
Probab=41.88 E-value=1.6e+02 Score=30.82 Aligned_cols=61 Identities=8% Similarity=0.030 Sum_probs=38.1
Q ss_pred HHHHHHhcCCCeEEEEcCCCCCChHHHHHHHHHhcCCC-CCCCc-eEEEecCCccccCCCHHHHHH
Q 004946 631 KLVRELCQNHTFLITVEEGSIGGFGSHVSHFIALDGLL-DSGVK-WRPIVLPDNYIEHASPTQQLA 694 (722)
Q Consensus 631 e~i~~~~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~-~~~~~-v~~ig~~d~f~~~g~~~~l~~ 694 (722)
+.+..+++....+++++... --.++++.|.+.|+. +.++- +.+++.+++-+-.++.+++.+
T Consensus 155 ~~l~~~~~~~~t~vi~~~~~---~~~~i~~~L~~~g~~~~~~v~v~e~l~~~~E~i~~~tl~~l~~ 217 (257)
T PRK15473 155 EQLESFASHQTSMAIFLSVQ---RIHRVAERLIAGGYPATTPVAVIYKATWPESQTVRGTLADIAE 217 (257)
T ss_pred hhHHHHhcCCCeEEEECCch---hHHHHHHHHHHcCCCCCCeEEEEEECCCCCcEEEEEEHHHHHH
Confidence 45667776666777777432 256677888877763 22222 357788887776666666543
No 337
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=41.29 E-value=83 Score=28.57 Aligned_cols=32 Identities=22% Similarity=0.431 Sum_probs=22.4
Q ss_pred CcEEEEEechhhHHHHHHHHHHHhcCCcEEEeecC
Q 004946 589 KDVALLGYGAMVQNCLKARALLSKLGIDVTVADAR 623 (722)
Q Consensus 589 ~dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~ 623 (722)
++|.|+..|.. |.++.+.+++.|+++-+++-.
T Consensus 3 kkvLIanrGei---a~r~~ra~r~~Gi~tv~v~s~ 34 (110)
T PF00289_consen 3 KKVLIANRGEI---AVRIIRALRELGIETVAVNSN 34 (110)
T ss_dssp SEEEESS-HHH---HHHHHHHHHHTTSEEEEEEEG
T ss_pred CEEEEECCCHH---HHHHHHHHHHhCCcceeccCc
Confidence 35777777777 566666677779998888754
No 338
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=40.92 E-value=1.3e+02 Score=32.69 Aligned_cols=90 Identities=14% Similarity=0.228 Sum_probs=49.5
Q ss_pred CCeeEEE-ecHhhHH---HHHHHHHHHHhcCCCCEEEEEeCCCccCCCCCCcC-cHHHHH-Hhc--CCCCcEEEeeCCHH
Q 004946 466 GLKPFCI-IPSAFLQ---RAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQC-GAFDIT-FMS--CLPNMIVMAPSDED 537 (722)
Q Consensus 466 G~~p~~~-t~~~Fl~---ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~-~~~d~a-~~~--~iP~l~V~~Psd~~ 537 (722)
+-..+|. .|.+... ..|+. +|.+++.+|||+|++-+.+. |- |.+|. ..-+.. |.| .|||+.| .=.|.-
T Consensus 185 ~~~~v~~alYGDGAaNQGQ~fEa-~NMA~LW~LP~IFvCENN~y-GM-GTs~~Rasa~teyykRG~yiPGl~V-dGmdvl 260 (394)
T KOG0225|consen 185 REDAVCFALYGDGAANQGQVFEA-FNMAALWKLPVIFVCENNHY-GM-GTSAERASASTEYYKRGDYIPGLKV-DGMDVL 260 (394)
T ss_pred cCCceEEEEeccccccchhHHHH-hhHHHHhCCCEEEEEccCCC-cc-CcchhhhhcChHHHhccCCCCceEE-CCcchh
Confidence 3334444 4877641 33433 48999999999999965543 22 22222 222222 333 4898865 223444
Q ss_pred HHHHHHHHHhh---hCCCCEEEEec
Q 004946 538 ELVDMVATVAS---IDDRPVCFRYP 559 (722)
Q Consensus 538 E~~~~l~~a~~---~~~~Pv~ir~~ 559 (722)
-+....++|.+ ..++|.++-+.
T Consensus 261 aVr~a~KfA~~~~~~g~GPilmE~~ 285 (394)
T KOG0225|consen 261 AVREATKFAKKYALEGKGPILMEMD 285 (394)
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 44455555543 24789988543
No 339
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=40.43 E-value=49 Score=29.75 Aligned_cols=40 Identities=30% Similarity=0.407 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcC
Q 004946 599 MVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQN 639 (722)
Q Consensus 599 ~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~ 639 (722)
....|.+|.+.|+++|+.++++|+.- .|++.+.+.++++.
T Consensus 5 ~C~t~rka~~~L~~~gi~~~~~d~~k-~p~s~~el~~~l~~ 44 (110)
T PF03960_consen 5 NCSTCRKALKWLEENGIEYEFIDYKK-EPLSREELRELLSK 44 (110)
T ss_dssp T-HHHHHHHHHHHHTT--EEEEETTT-S---HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCeEeehhhh-CCCCHHHHHHHHHH
Confidence 34678999999999999999999984 68888888777654
No 340
>PRK10329 glutaredoxin-like protein; Provisional
Probab=40.29 E-value=86 Score=26.65 Aligned_cols=61 Identities=11% Similarity=0.171 Sum_probs=39.4
Q ss_pred cEEEEEechhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhc-C--CCeEEEEcCCCCCChH
Q 004946 590 DVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQ-N--HTFLITVEEGSIGGFG 655 (722)
Q Consensus 590 dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~-~--~~~vvvvEe~~~gG~g 655 (722)
+|+|.+. .....|..|.+.|+++||..+.+|+.. |.+...++.. . .=.++++++....||.
T Consensus 2 ~v~lYt~-~~Cp~C~~ak~~L~~~gI~~~~idi~~----~~~~~~~~~~~g~~~vPvv~i~~~~~~Gf~ 65 (81)
T PRK10329 2 RITIYTR-NDCVQCHATKRAMESRGFDFEMINVDR----VPEAAETLRAQGFRQLPVVIAGDLSWSGFR 65 (81)
T ss_pred EEEEEeC-CCCHhHHHHHHHHHHCCCceEEEECCC----CHHHHHHHHHcCCCCcCEEEECCEEEecCC
Confidence 3555543 555889999999999999999999974 2333322221 1 2256667665556664
No 341
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=40.25 E-value=63 Score=29.77 Aligned_cols=49 Identities=22% Similarity=0.310 Sum_probs=37.5
Q ss_pred EEEEEechhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcCCC
Q 004946 591 VALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHT 641 (722)
Q Consensus 591 v~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~~ 641 (722)
|+|..+-++ ..|.+|.+.|+++||..+++|... .|++.+.+.+.++..+
T Consensus 3 itiy~~p~C-~t~rka~~~L~~~gi~~~~~~y~~-~~~s~~eL~~~l~~~g 51 (117)
T COG1393 3 ITIYGNPNC-STCRKALAWLEEHGIEYTFIDYLK-TPPSREELKKILSKLG 51 (117)
T ss_pred EEEEeCCCC-hHHHHHHHHHHHcCCCcEEEEeec-CCCCHHHHHHHHHHcC
Confidence 455444443 489999999999999999999874 6888888877776543
No 342
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=40.00 E-value=81 Score=25.73 Aligned_cols=57 Identities=19% Similarity=0.260 Sum_probs=36.3
Q ss_pred hhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcCCCeEEEEcCC-CCCChH
Q 004946 598 AMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEG-SIGGFG 655 (722)
Q Consensus 598 s~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~~~vvvvEe~-~~gG~g 655 (722)
.....|..|.+.|++.|+..+.+|+.. .|-..+.+.+.-..+=.++++++. ..+||-
T Consensus 7 ~~Cp~C~~ak~~L~~~~i~~~~~di~~-~~~~~~~~~~~g~~~vP~v~~~g~~~~~G~~ 64 (72)
T TIGR02194 7 NNCVQCKMTKKALEEHGIAFEEINIDE-QPEAIDYVKAQGFRQVPVIVADGDLSWSGFR 64 (72)
T ss_pred CCCHHHHHHHHHHHHCCCceEEEECCC-CHHHHHHHHHcCCcccCEEEECCCcEEeccC
Confidence 345789999999999999999999974 222223333221122356777654 357764
No 343
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=39.67 E-value=1.5e+02 Score=33.08 Aligned_cols=81 Identities=15% Similarity=0.227 Sum_probs=57.1
Q ss_pred EEEeCCcEEEEEechhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcCC---CeEEEEcCCCCCCh---HHH
Q 004946 584 VLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNH---TFLITVEEGSIGGF---GSH 657 (722)
Q Consensus 584 vl~eG~dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~---~~vvvvEe~~~gG~---gs~ 657 (722)
.+..|.+|.++..|.--..--+.++ ..|.++.+++..|=+|+|-+.+.+.+++. +.|.++..-...|. -.+
T Consensus 76 l~~pgdkVLv~~nG~FG~R~~~ia~---~~g~~v~~~~~~wg~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnpl~~ 152 (383)
T COG0075 76 LVEPGDKVLVVVNGKFGERFAEIAE---RYGAEVVVLEVEWGEAVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNPLKE 152 (383)
T ss_pred ccCCCCeEEEEeCChHHHHHHHHHH---HhCCceEEEeCCCCCCCCHHHHHHHHhcCCCccEEEEEeccCcccccCcHHH
Confidence 3456889999999998876655554 46999999999999999999999988743 33444433332333 355
Q ss_pred HHHHHHhcCC
Q 004946 658 VSHFIALDGL 667 (722)
Q Consensus 658 v~~~l~~~~~ 667 (722)
|+..+.+.+.
T Consensus 153 I~~~~k~~g~ 162 (383)
T COG0075 153 IAKAAKEHGA 162 (383)
T ss_pred HHHHHHHcCC
Confidence 6666666654
No 344
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=39.61 E-value=2.9e+02 Score=30.94 Aligned_cols=50 Identities=14% Similarity=0.187 Sum_probs=30.4
Q ss_pred HHHHHHHHHhcCCC-CEEEEEeCCCccCCCCCCcC---cHHHH-HHhcCCCCcEEEee
Q 004946 481 AYDQVVNDVDQQRL-PVRFVITSAGLVGSDGPTQC---GAFDI-TFMSCLPNMIVMAP 533 (722)
Q Consensus 481 a~dqi~~~~a~~~l-pVv~v~~~~G~~G~dG~TH~---~~~d~-a~~~~iP~l~V~~P 533 (722)
.++.+ +.++..+| +++++.+..++ ..||+|-. ..+++ .-++++ ||.|+.-
T Consensus 164 vwEA~-~~Ag~~kL~NLivIvD~N~~-qidG~t~~v~~~~e~l~~kf~Af-GW~vi~V 218 (386)
T cd02017 164 SLGAI-GLAAREKLDNLIFVVNCNLQ-RLDGPVRGNGKIIQELEGIFRGA-GWNVIKV 218 (386)
T ss_pred HHHHH-HHHHHhCCCCEEEEEECCCC-ccCCcccccccCchhHHHHHHhc-CCEEEEE
Confidence 34433 56677787 57777777775 44566644 34444 345554 8988765
No 345
>COG0680 HyaD Ni,Fe-hydrogenase maturation factor [Energy production and conversion]
Probab=38.02 E-value=80 Score=30.79 Aligned_cols=55 Identities=22% Similarity=0.232 Sum_probs=35.3
Q ss_pred CcEEEEEechhhH----HHHHHHHHHHhcCC---cEEEeecCccccchHHHHHHHhcCCCeEEEEc
Q 004946 589 KDVALLGYGAMVQ----NCLKARALLSKLGI---DVTVADARFCKPLDIKLVRELCQNHTFLITVE 647 (722)
Q Consensus 589 ~dv~lva~Gs~v~----~aleAa~~L~~~Gi---~v~Vidl~~lkPld~e~i~~~~~~~~~vvvvE 647 (722)
..++|+++|+.+. .-..++++|+++.. +++|+|.-+.-|.-. ..+...+.+|+|+
T Consensus 2 ~~ilIlG~GN~L~~DDG~Gv~vae~L~~~~~~~~~v~vid~Gt~~~~l~----~~l~~~d~vIIVD 63 (160)
T COG0680 2 MRILILGVGNILMGDDGFGVRVAEKLKKRYKPPENVEVIDGGTAGPNLL----GLLAGYDPVIIVD 63 (160)
T ss_pred CeEEEEeeCCcccccCcccHHHHHHHHHhcCCCCCeEEEEcCCCcHHHH----HHhcCCCcEEEEE
Confidence 3688999998762 34566777776543 688999998754332 2333444566665
No 346
>cd06062 H2MP_MemB-H2up Endopeptidases belonging to membrane-bound hydrogenases group. These hydrogenases transfer electrons from H2 to a cytochrome that is bound to a membrane-located complex coupling electron transfer to transmembrane proton translocation. Endopeptidase HybD from E. coli is well studied in this group. Maturation of [NiFe] hydrogenases include proteolytic processing of large subunit, assembly with other subunits, and formation of the nickel metallocenter. Hydrogenase maturation endopeptidase (HybD) cleaves a short C-terminal peptide after a His or an Arg residue in the large subunit (pre-HybC) of hydrogenase 2 (hyb operon) in E. coli. This cleavage is nickel dependent. A variety of endopeptidases belong to this group that are similar in function and sequence homology. They include such proteins as HynC, HoxM, and HupD.
Probab=38.01 E-value=1.1e+02 Score=29.02 Aligned_cols=54 Identities=20% Similarity=0.281 Sum_probs=36.4
Q ss_pred EEEEEechhh----HHHHHHHHHHHhc-C--CcEEEeecCccccchHHHHHHHhcCCCeEEEEcC
Q 004946 591 VALLGYGAMV----QNCLKARALLSKL-G--IDVTVADARFCKPLDIKLVRELCQNHTFLITVEE 648 (722)
Q Consensus 591 v~lva~Gs~v----~~aleAa~~L~~~-G--i~v~Vidl~~lkPld~e~i~~~~~~~~~vvvvEe 648 (722)
++|+++|+.. .....+++.|+++ + -.++++|..+.- .+.+ ..+.+++.+|+|+.
T Consensus 1 ilV~GiGN~l~gDDG~G~~va~~L~~~~~~~~~v~vi~~~~~~---~~l~-~~l~~~d~viiVDA 61 (146)
T cd06062 1 ILVLGIGNILLADEGIGVHAVERLEENYSFPENVELIDGGTLG---LELL-PYIEEADRLIIVDA 61 (146)
T ss_pred CEEEEECccccccCcHHHHHHHHHHHhcCCCCCeEEEECCCCH---HHHH-HHHhcCCEEEEEEc
Confidence 4688999877 3466778888765 3 458899988753 2333 33456778888886
No 347
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=37.94 E-value=1.6e+02 Score=24.74 Aligned_cols=71 Identities=18% Similarity=0.280 Sum_probs=45.3
Q ss_pred EEEEEechhhHHHHHHHHHHHh-----cCCcEEEeecCccccchHHHHHHHhc---CCCeEEEEcCCCCCChHHHHHHHH
Q 004946 591 VALLGYGAMVQNCLKARALLSK-----LGIDVTVADARFCKPLDIKLVRELCQ---NHTFLITVEEGSIGGFGSHVSHFI 662 (722)
Q Consensus 591 v~lva~Gs~v~~aleAa~~L~~-----~Gi~v~Vidl~~lkPld~e~i~~~~~---~~~~vvvvEe~~~gG~gs~v~~~l 662 (722)
|+|.+ -+....|.+|.+.|++ .|+..+.+|+.. .+...+.+.+... .+=+.|+++.-..||+.. +.+++
T Consensus 3 v~iy~-~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~-~~~~~~el~~~~~~~~~~vP~ifi~g~~igg~~~-~~~~~ 79 (85)
T PRK11200 3 VVIFG-RPGCPYCVRAKELAEKLSEERDDFDYRYVDIHA-EGISKADLEKTVGKPVETVPQIFVDQKHIGGCTD-FEAYV 79 (85)
T ss_pred EEEEe-CCCChhHHHHHHHHHhhcccccCCcEEEEECCC-ChHHHHHHHHHHCCCCCcCCEEEECCEEEcCHHH-HHHHH
Confidence 44444 3456778888888887 799999999984 3333444555443 233567787766888864 44444
Q ss_pred Hh
Q 004946 663 AL 664 (722)
Q Consensus 663 ~~ 664 (722)
.+
T Consensus 80 ~~ 81 (85)
T PRK11200 80 KE 81 (85)
T ss_pred HH
Confidence 43
No 348
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=37.49 E-value=2.6e+02 Score=27.00 Aligned_cols=55 Identities=15% Similarity=0.033 Sum_probs=33.7
Q ss_pred cCCCcchHHHHHHHHHHHHHcCCCCeEEEEe-cCCCcccchHHHHHHHhhhcCCCEEEEEECCC
Q 004946 191 AGHGCNSVSAGLGMAVARDIKGKRECIVTVI-SNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR 253 (722)
Q Consensus 191 ~G~~G~~ls~A~G~A~A~~l~~~~~~Vv~vi-GDGa~~~G~~~EAln~A~~~~~plivIv~dN~ 253 (722)
+-|-..+.-+|.|.+.+. +..+|++ ...+++ -..-+|.+|...+.||++|.-+..
T Consensus 41 ~rhE~~A~~mA~gyar~t------~~gv~~~t~GpG~~--n~~~gl~~A~~~~~Pvl~i~g~~~ 96 (162)
T cd07038 41 NCNELNAGYAADGYARVK------GLGALVTTYGVGEL--SALNGIAGAYAEHVPVVHIVGAPS 96 (162)
T ss_pred eCCHHHHHHHHHHHHHhh------CCEEEEEcCCccHH--HHHHHHHHHHHcCCCEEEEecCCC
Confidence 345555556677776652 2444444 333443 244578888777899999985544
No 349
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=37.03 E-value=4.4e+02 Score=30.30 Aligned_cols=156 Identities=12% Similarity=0.087 Sum_probs=85.9
Q ss_pred ccchHHHHHHHHHHHHhcCCCEEEEecC----CCC--ccchHHHHHhCCCcee-ecccchHHHHHHHHHHhcCC-C-eeE
Q 004946 400 SRTYDDCFIEALVMEAEKDKDIVVVHAG----MEM--DLSLQLFQEKFPERYF-DVGMAEQHAVTFSAGLACGG-L-KPF 470 (722)
Q Consensus 400 ~~s~~~a~~~~L~~~~~~d~~iv~i~ad----~~~--~~~l~~f~~~~p~R~~-d~GIaE~~av~~AaGlA~~G-~-~p~ 470 (722)
..+..+++.+.|...+....+++-+-+. .+- ..|+..-.+..|+..- --|=+||.|.-.|.+.|..- . |-+
T Consensus 6 RlT~aQAlvrfL~~Q~~~~ge~~p~~~GvfaIFGHGNVaGiGeAL~~~~~~l~~yqg~NEQgMAhaAiayaKq~~Rrr~~ 85 (617)
T COG3962 6 RLTMAQALVRFLAQQMTEIGEIVPFVGGVFAIFGHGNVAGIGEALYQVRDHLPTYQGHNEQGMAHAAIAYAKQHRRRRIY 85 (617)
T ss_pred hhHHHHHHHHHHHhhhhhhcccccccceeeEEecCcchhhhHHHHHhCccccchhhcccHhHHHHHHHHHHHHHhhceee
Confidence 3566777777776666554443322221 121 2345444445565432 45789999999999999873 2 333
Q ss_pred EEe--cHhhHHHHHHHHHHHHh---cCCCCEEEEEeCCCc-cCCCCCCcCcHHHHHHhcCCCCcEEEee--------CCH
Q 004946 471 CII--PSAFLQRAYDQVVNDVD---QQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAP--------SDE 536 (722)
Q Consensus 471 ~~t--~~~Fl~ra~dqi~~~~a---~~~lpVv~v~~~~G~-~G~dG~TH~~~~d~a~~~~iP~l~V~~P--------sd~ 536 (722)
.++ ..+....+. ..++ -.++||.++- ..-+ .-...|.-|+.+|..-. .|---..|.| .-|
T Consensus 86 A~tsSiGPGA~Nmv----TaAalA~~NrlPvLllP-gDvfA~R~PDPVLQQ~E~~~d~-~it~NDcfrPVSRYfDRItRP 159 (617)
T COG3962 86 AVTSSIGPGAANMV----TAAALAHVNRLPVLLLP-GDVFATRQPDPVLQQLEQFGDG-TITTNDCFRPVSRYFDRITRP 159 (617)
T ss_pred EEecccCCcHHHHH----HHHHHHHhhcCceEeec-cchhcccCCChHHHhhhccccC-ceecccccccHHHHhhhcCCH
Confidence 333 344443322 2333 3689998863 1112 12234666776663211 0110112444 357
Q ss_pred HHHHHHHHHHhhh-----CCCCEEEEecCC
Q 004946 537 DELVDMVATVASI-----DDRPVCFRYPRG 561 (722)
Q Consensus 537 ~E~~~~l~~a~~~-----~~~Pv~ir~~r~ 561 (722)
+++...+..|++. +-+|+.+.++..
T Consensus 160 EQl~sal~rA~~VmTDPA~~GpvTl~l~QD 189 (617)
T COG3962 160 EQLMSALPRAMRVMTDPADCGPVTLALCQD 189 (617)
T ss_pred HHHHHHHHHHHHHhCChhhcCceEEEechh
Confidence 8999999888873 346898887654
No 350
>cd06063 H2MP_Cyano-H2up This group of endopeptidases include HupW enzymes that are specific to the cyanobacterial hydrogenase and are involved in the C-terminal cleavage of the hydrogenase large subunit precursor protein. Cyanobacterial nickel-iron (NiFe)-hydrogenases are found exclusively in the N2-fixing strains and are encoded by hup (hydrogen uptake) genes. These uptake hydrogenases are heterodimers with a large (hupL) and small subunit (hupS) and catalyze the consumption of the H2 produced during N2 fixation. Sequence similarity shows that the putative metal-binding resides are well conserved in this group of hydrogen maturation proteases. This group also includes such proteins as the hydrogenase III from Aquifex aeolicus.
Probab=36.63 E-value=1.2e+02 Score=28.84 Aligned_cols=55 Identities=13% Similarity=0.186 Sum_probs=36.2
Q ss_pred EEEEEechhhH----HHHHHHHHHHhcCC--cEEEeecCccccchHHHHHHHhcCCCeEEEEcCC
Q 004946 591 VALLGYGAMVQ----NCLKARALLSKLGI--DVTVADARFCKPLDIKLVRELCQNHTFLITVEEG 649 (722)
Q Consensus 591 v~lva~Gs~v~----~aleAa~~L~~~Gi--~v~Vidl~~lkPld~e~i~~~~~~~~~vvvvEe~ 649 (722)
++|+++|+... ....+++.|++... .++++|..+.- .+.+ ..+.+++.+|+|+-.
T Consensus 1 ~lVlGiGN~L~~DDG~G~~v~~~L~~~~~~~~v~~id~gt~~---~~l~-~~l~~~d~vIiVDA~ 61 (146)
T cd06063 1 LTIIGCGNLNRGDDGVGPILIRRLQAYLLPPHVRLVDCGTAG---MEVM-FRARGAKQLIIIDAS 61 (146)
T ss_pred CEEEEECCcccccCcHHHHHHHHHhhcCCCCCeEEEECCCCH---HHHH-HHhcCCCEEEEEEeC
Confidence 46888888772 56677888876533 48889988763 2333 333466778888763
No 351
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=36.53 E-value=66 Score=28.88 Aligned_cols=43 Identities=23% Similarity=0.192 Sum_probs=36.3
Q ss_pred hhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcCCC
Q 004946 598 AMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHT 641 (722)
Q Consensus 598 s~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~~ 641 (722)
+....|.+|.+.|+++|+..+++|+.. .|++.+.+.++++..+
T Consensus 7 ~~C~~crka~~~L~~~~i~~~~~di~~-~p~s~~eL~~~l~~~g 49 (105)
T cd03035 7 KNCDTVKKARKWLEARGVAYTFHDYRK-DGLDAATLERWLAKVG 49 (105)
T ss_pred CCCHHHHHHHHHHHHcCCCeEEEeccc-CCCCHHHHHHHHHHhC
Confidence 445789999999999999999999985 7889999988887543
No 352
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase. This model represents precorrin-4 C11-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-3B C17-methyltransferase, EC 2.1.1.131). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products.
Probab=35.74 E-value=1.7e+02 Score=29.64 Aligned_cols=62 Identities=13% Similarity=0.055 Sum_probs=38.4
Q ss_pred HHHHHHHhcCCCeEEEEcCCCCCChHHHHHHHHHhcCCC-CCCCc-eEEEecCCccccCCCHHHHHH
Q 004946 630 IKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIALDGLL-DSGVK-WRPIVLPDNYIEHASPTQQLA 694 (722)
Q Consensus 630 ~e~i~~~~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~-~~~~~-v~~ig~~d~f~~~g~~~~l~~ 694 (722)
.+.+..+++....+++.+... . -.++++.+.+.|+. +.++- +.+++.+++-+..++.+++.+
T Consensus 145 ~~~l~~~~~~~~~~vi~~~~~--~-~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~ 208 (229)
T TIGR01465 145 GEKLADLAKHGATMAIFLSAH--I-LDKVVKELIEGGYSEDTPVAVVYRATWPDEKIVRGTLADLAD 208 (229)
T ss_pred hHHHHHHhcCCCeEEEECcHH--H-HHHHHHHHHHcCcCCCCcEEEEEeCCCCCcEEEEEEHHHHHH
Confidence 445667776666777777652 2 36677788777753 11222 347788887777666666543
No 353
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=35.56 E-value=55 Score=30.04 Aligned_cols=54 Identities=22% Similarity=0.273 Sum_probs=35.5
Q ss_pred EeCCcEEEEEechhh-HHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcCCCeE
Q 004946 586 VEGKDVALLGYGAMV-QNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFL 643 (722)
Q Consensus 586 ~eG~dv~lva~Gs~v-~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~~~v 643 (722)
....+++|+++|... ..--+..+.|+++||.+++.|...- -.+...+..+.++|
T Consensus 52 ~~~peiliiGtG~~~~~~~~~~~~~l~~~gi~vevm~T~~A----crtyN~L~~EgR~V 106 (114)
T cd05125 52 EPRPEILVIGTGRKSRPLSPELRKYFKKLGIAVEVVDTRNA----CATFNFLAEEGRRV 106 (114)
T ss_pred cCCCCEEEEccCCCCCcCCHHHHHHHHHcCCEEEEECHHHH----HHHHHHHHhCCCeE
Confidence 345689999999854 3334556788889999999986521 13334455455444
No 354
>PRK10853 putative reductase; Provisional
Probab=35.20 E-value=52 Score=30.31 Aligned_cols=41 Identities=29% Similarity=0.344 Sum_probs=34.7
Q ss_pred hhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcCC
Q 004946 599 MVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNH 640 (722)
Q Consensus 599 ~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~ 640 (722)
....|.+|.+.|+++|+.++++|..- .|++.+.+.+.+...
T Consensus 9 ~C~t~rkA~~~L~~~~i~~~~~d~~k-~p~s~~eL~~~l~~~ 49 (118)
T PRK10853 9 NCDTIKKARRWLEAQGIDYRFHDYRV-DGLDSELLQGFIDEL 49 (118)
T ss_pred CCHHHHHHHHHHHHcCCCcEEeehcc-CCcCHHHHHHHHHHc
Confidence 45678999999999999999999985 788998888877543
No 355
>PRK10824 glutaredoxin-4; Provisional
Probab=35.20 E-value=1.4e+02 Score=27.43 Aligned_cols=69 Identities=16% Similarity=0.039 Sum_probs=46.0
Q ss_pred CCcEEEEEech----hhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHh-cCCCeEEEEcCCCCCChHHH
Q 004946 588 GKDVALLGYGA----MVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELC-QNHTFLITVEEGSIGGFGSH 657 (722)
Q Consensus 588 G~dv~lva~Gs----~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~-~~~~~vvvvEe~~~gG~gs~ 657 (722)
..+|+|++-|+ ....|..|.+.|.+.|++..++|+-. .|--.+.+.+.- ..+=.-|+|....+||....
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~-d~~~~~~l~~~sg~~TVPQIFI~G~~IGG~ddl 87 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQ-NPDIRAELPKYANWPTFPQLWVDGELVGGCDIV 87 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecC-CHHHHHHHHHHhCCCCCCeEEECCEEEcChHHH
Confidence 45788999884 68899999999999999999998853 111112222221 12334566777777887643
No 356
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=34.64 E-value=50 Score=29.85 Aligned_cols=54 Identities=22% Similarity=0.209 Sum_probs=32.7
Q ss_pred eCCcEEEEEechhhH-HHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcCCCeEE
Q 004946 587 EGKDVALLGYGAMVQ-NCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLI 644 (722)
Q Consensus 587 eG~dv~lva~Gs~v~-~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~~~vv 644 (722)
+..|+.||++|.... .--+..+.|+++||.+++.|-+.- -.+...+..+.++|.
T Consensus 52 p~pe~liiGtG~~~~~~~~~~~~~l~~~GI~ve~m~T~~A----c~tyN~L~~EgR~V~ 106 (110)
T PF04430_consen 52 PKPEVLIIGTGKRQLFLPPELREYLRKKGIGVEVMDTPAA----CRTYNILASEGRRVA 106 (110)
T ss_dssp CS-SEEEEEETTS-SECTHHHHHHHHTTT-EEEEE-HHHH----HHHHHHHHHTTC-EE
T ss_pred CCCcEEEEccCCccccCCHHHHHHHHHcCCeEEEECHHHH----HHHHHHHHhCCccEE
Confidence 367999999998753 344567788999999999986531 133344555555543
No 357
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=32.97 E-value=1.2e+02 Score=28.42 Aligned_cols=85 Identities=21% Similarity=0.252 Sum_probs=46.6
Q ss_pred HHHHHHHhcCCcEEEeecCccccchHHHHHHHhcCCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEe------
Q 004946 605 KARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIV------ 678 (722)
Q Consensus 605 eAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~v~~ig------ 678 (722)
.|++.|++.|++.. -..-++++...+ ...+.||++++... +.+..... ....++..++
T Consensus 49 ~a~~~l~~~Gid~s---~h~s~~l~~~~~----~~aDlIi~m~~~~~--------~~~~~~~~-~~~~~v~~~~~~~~~~ 112 (141)
T cd00115 49 RAIAVLAEHGIDIS---GHRARQLTEDDF----DEFDLIITMDESNL--------AELLEPPP-GGRAKVELLGEYAGDR 112 (141)
T ss_pred HHHHHHHHcCCCcc---cCeeeeCCHHHH----HhCCEEEEECHHHH--------HHHHhcCC-CCcceEEeHhhhCcCC
Confidence 45566777888863 355566666443 45689999987531 11211111 1234566666
Q ss_pred -cCCccccCCCHHHHHHHcCCCHHHHHHHHHHHh
Q 004946 679 -LPDNYIEHASPTQQLALAGLTGHHIAATALSLL 711 (722)
Q Consensus 679 -~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~ll 711 (722)
++|.|+.. ++.|.-..+.|.+.+.+++
T Consensus 113 ~i~DP~~~~------~~~f~~~~~~I~~~v~~l~ 140 (141)
T cd00115 113 EVPDPYYGS------LEAFEEVYDLIEEAIKALL 140 (141)
T ss_pred CCCCCCCCC------hHHHHHHHHHHHHHHHHHh
Confidence 77766543 2223333466666666654
No 358
>PRK10264 hydrogenase 1 maturation protease; Provisional
Probab=32.95 E-value=1.9e+02 Score=29.19 Aligned_cols=56 Identities=14% Similarity=0.216 Sum_probs=38.6
Q ss_pred CcEEEEEechhhH----HHHHHHHHHHhc---CCcEEEeecCccccchHHHHHHHhcCCCeEEEEcC
Q 004946 589 KDVALLGYGAMVQ----NCLKARALLSKL---GIDVTVADARFCKPLDIKLVRELCQNHTFLITVEE 648 (722)
Q Consensus 589 ~dv~lva~Gs~v~----~aleAa~~L~~~---Gi~v~Vidl~~lkPld~e~i~~~~~~~~~vvvvEe 648 (722)
.+++|+++|+.+. ....+++.|+++ .-.++++|.-+.-+ +.+ ..+.+.+.+|+|+-
T Consensus 4 ~rilVlGiGN~L~gDDGvG~~va~~L~~~~~~~~~V~vid~Gt~g~---~ll-~~i~~~d~vIiVDA 66 (195)
T PRK10264 4 QRVVVMGLGNLLWADEGFGVRVAERLYAHYHWPEYVEIVDGGTQGL---NLL-GYVESASHLLILDA 66 (195)
T ss_pred CCEEEEEeCccccccCcHHHHHHHHHHhhcCCCCCeEEEECCCCHH---HHH-HHHcCCCEEEEEEC
Confidence 4689999999872 566788888654 23588999887532 333 44456777777774
No 359
>PRK10026 arsenate reductase; Provisional
Probab=32.07 E-value=1e+02 Score=29.43 Aligned_cols=43 Identities=9% Similarity=0.067 Sum_probs=35.9
Q ss_pred hhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcCCC
Q 004946 598 AMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHT 641 (722)
Q Consensus 598 s~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~~ 641 (722)
.....|.+|.+.|+++|+.++++|..- .|++.+.|...++..+
T Consensus 10 p~Cst~RKA~~wL~~~gi~~~~~d~~~-~ppt~~eL~~~l~~~g 52 (141)
T PRK10026 10 PACGTSRNTLEMIRNSGTEPTIIHYLE-TPPTRDELVKLIADMG 52 (141)
T ss_pred CCCHHHHHHHHHHHHCCCCcEEEeeeC-CCcCHHHHHHHHHhCC
Confidence 455789999999999999999999986 7888888888776543
No 360
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=30.90 E-value=1.5e+02 Score=25.04 Aligned_cols=62 Identities=23% Similarity=0.317 Sum_probs=40.4
Q ss_pred EEEEEechhhHHHHHHHHHHHhcCCcEEEeecCccccchH-HHHHHHh-cCCCeEEEEcCCCCCC
Q 004946 591 VALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDI-KLVRELC-QNHTFLITVEEGSIGG 653 (722)
Q Consensus 591 v~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~-e~i~~~~-~~~~~vvvvEe~~~gG 653 (722)
|+|.+. +....|..|.+.|.++|+....+++.--.+-.. +.+++.- ..+=.+|++.+...||
T Consensus 3 v~iyt~-~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~igg 66 (80)
T COG0695 3 VTIYTK-PGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHVGG 66 (80)
T ss_pred EEEEEC-CCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEEEeC
Confidence 444443 337889999999999999999999886554222 3333331 2344678888865544
No 361
>cd06068 H2MP_like-1 Putative [NiFe] hydrogenase-specific C-terminal protease. Sequence comparison shows similarity to hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved in processing of HypE (the large subunit of hydrogenases 3). This cleavage is nickel dependent.
Probab=30.83 E-value=1.6e+02 Score=27.76 Aligned_cols=54 Identities=26% Similarity=0.250 Sum_probs=35.1
Q ss_pred EEEechhh----HHHHHHHHHHHhcCC--cEEEeecCccccchHHHHHHHhcCCCeEEEEcCC
Q 004946 593 LLGYGAMV----QNCLKARALLSKLGI--DVTVADARFCKPLDIKLVRELCQNHTFLITVEEG 649 (722)
Q Consensus 593 lva~Gs~v----~~aleAa~~L~~~Gi--~v~Vidl~~lkPld~e~i~~~~~~~~~vvvvEe~ 649 (722)
|+++|+.+ .....+++.|+++.. .++++|..+. ..+.+..+++.++.+|+|+..
T Consensus 2 ViGiGN~l~~DDGvG~~v~~~L~~~~~~~~v~~~d~g~~---~~~l~~~~~~~~d~viiVDA~ 61 (144)
T cd06068 2 VAGVGNIFLGDDGFGVEVARRLRPRQLPPGVRVADFGIR---GIHLAYELLDGYDTLILVDAV 61 (144)
T ss_pred EEEECccccccCcHHHHHHHHHhccCCCCCeEEEECCCC---HHHHHHHHHhcCCEEEEEEec
Confidence 67778766 256677888876643 3788888764 233443445567778887763
No 362
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=30.53 E-value=1.1e+02 Score=29.83 Aligned_cols=41 Identities=27% Similarity=0.153 Sum_probs=30.7
Q ss_pred EEEEEechhhHHHHHHHHHHHhcCCcEEEeecCccccchHH
Q 004946 591 VALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIK 631 (722)
Q Consensus 591 v~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e 631 (722)
++|++.|.....++.++..|.++|++|.|+-+.-...++++
T Consensus 29 ~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~ 69 (169)
T PF03853_consen 29 LILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSED 69 (169)
T ss_dssp EEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHH
T ss_pred EEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHH
Confidence 56788899999999999999999999999544433344443
No 363
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=30.52 E-value=77 Score=34.98 Aligned_cols=48 Identities=13% Similarity=0.057 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECC
Q 004946 197 SVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDS 252 (722)
Q Consensus 197 ~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN 252 (722)
++++|+|+++| ..++++..-|+++. ..+|.|..|+-...|+++++-+-
T Consensus 60 A~~~a~GAs~a------G~Ra~taTSg~Gl~--lm~E~l~~a~~~e~P~v~v~v~R 107 (352)
T PRK07119 60 AINMVYGAAAT------GKRVMTSSSSPGIS--LKQEGISYLAGAELPCVIVNIMR 107 (352)
T ss_pred HHHHHHHHHhh------CCCEEeecCcchHH--HHHHHHHHHHHccCCEEEEEecc
Confidence 67888888887 66788888899987 88999999999999988876553
No 364
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=30.16 E-value=2.7e+02 Score=25.57 Aligned_cols=77 Identities=18% Similarity=0.167 Sum_probs=45.7
Q ss_pred EEEeeCCHHHHHHHHHHHhhhCCCCEEEEecCCCcccccCCCCCCCCc--cccccEEEEEeCCcEEEEEechhhHHHHHH
Q 004946 529 IVMAPSDEDELVDMVATVASIDDRPVCFRYPRGAIVRTDLPGYRGIPI--EEIGKGKVLVEGKDVALLGYGAMVQNCLKA 606 (722)
Q Consensus 529 ~V~~Psd~~E~~~~l~~a~~~~~~Pv~ir~~r~~~~~~~~p~~~~~~~--~~igk~~vl~eG~dv~lva~Gs~v~~aleA 606 (722)
.|+.|.+.+|+..++++|.+ .+.|+.++-........... ....-+ ..+.+...+.+....+.+..|.......+.
T Consensus 3 ~vv~P~s~~ev~~~v~~a~~-~~~~v~~~g~G~~~~~~~~~-~~~ivi~~~~l~~i~~id~~~~~v~v~aG~~~~~l~~~ 80 (139)
T PF01565_consen 3 AVVRPKSVEEVQAIVKFANE-NGVPVRVRGGGHSWTGQSSD-EGGIVIDMSRLNKIIEIDPENGTVTVGAGVTWGDLYEA 80 (139)
T ss_dssp EEEEESSHHHHHHHHHHHHH-TTSEEEEESSSTTSSSTTSS-TTEEEEECTTCGCEEEEETTTTEEEEETTSBHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHH-cCCcEEEEcCCCCccccccc-CCcEEEeeccccccccccccceeEEEeccccchhcccc
Confidence 48999999999999999965 57788887655442221110 001111 012221222334567778888888765544
Q ss_pred H
Q 004946 607 R 607 (722)
Q Consensus 607 a 607 (722)
.
T Consensus 81 l 81 (139)
T PF01565_consen 81 L 81 (139)
T ss_dssp H
T ss_pred c
Confidence 3
No 365
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=30.02 E-value=72 Score=28.88 Aligned_cols=35 Identities=34% Similarity=0.382 Sum_probs=27.6
Q ss_pred CcEEEEEechhh-HHHHHHHHHHHhcCCcEEEeecC
Q 004946 589 KDVALLGYGAMV-QNCLKARALLSKLGIDVTVADAR 623 (722)
Q Consensus 589 ~dv~lva~Gs~v-~~aleAa~~L~~~Gi~v~Vidl~ 623 (722)
.++.||++|... ..--+..+.|+++||.+++.|-.
T Consensus 53 peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T~ 88 (109)
T cd00248 53 PDILLIGTGAEIAFLPRALRAALRAAGIGVEVMSTG 88 (109)
T ss_pred CCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCcH
Confidence 789999999855 23345567888999999999865
No 366
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=29.94 E-value=4.9e+02 Score=29.02 Aligned_cols=51 Identities=16% Similarity=0.104 Sum_probs=38.0
Q ss_pred chHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCC
Q 004946 196 NSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRH 254 (722)
Q Consensus 196 ~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~ 254 (722)
.++++|+|.+.| ..++++..-=+++. ...|.+..++....|+++++-+...
T Consensus 59 aA~~~a~GAs~a------G~Ra~TaTSg~Gl~--lm~E~~~~a~~~e~P~Viv~~~R~g 109 (376)
T PRK08659 59 ASMAAVIGASWA------GAKAMTATSGPGFS--LMQENIGYAAMTETPCVIVNVQRGG 109 (376)
T ss_pred HHHHHHHhHHhh------CCCeEeecCCCcHH--HHHHHHHHHHHcCCCEEEEEeecCC
Confidence 367888888887 55566665556664 6789999998888999988777553
No 367
>PRK10466 hybD hydrogenase 2 maturation endopeptidase; Provisional
Probab=29.81 E-value=2.1e+02 Score=27.82 Aligned_cols=56 Identities=18% Similarity=0.182 Sum_probs=37.8
Q ss_pred cEEEEEechhhH----HHHHHHHHHHhc-C--CcEEEeecCccccchHHHHHHHhcCCCeEEEEcCC
Q 004946 590 DVALLGYGAMVQ----NCLKARALLSKL-G--IDVTVADARFCKPLDIKLVRELCQNHTFLITVEEG 649 (722)
Q Consensus 590 dv~lva~Gs~v~----~aleAa~~L~~~-G--i~v~Vidl~~lkPld~e~i~~~~~~~~~vvvvEe~ 649 (722)
+++|+++|+.+. ....+++.|++. . -+++++|..+.- .+.+ ..+..++.+|+|+..
T Consensus 2 ~ilVlGiGN~l~gDDGvG~~va~~L~~~~~~~~~v~vid~gt~~---~~ll-~~l~~~d~vIiVDA~ 64 (164)
T PRK10466 2 RILVLGVGNILLTDEAIGVRIVEALEQRYILPDYVEILDGGTAG---MELL-GDMANRDHLIIADAI 64 (164)
T ss_pred ceEEEEECchhhccCcHHHHHHHHHHHhcCCCCCeEEEeccccH---HHHH-HHHhCCCEEEEEEec
Confidence 578999999873 566788888763 3 358899988753 2333 333466777777753
No 368
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=29.70 E-value=3.3e+02 Score=29.68 Aligned_cols=30 Identities=20% Similarity=0.266 Sum_probs=23.3
Q ss_pred CceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEEE
Q 004946 329 GLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVH 363 (722)
Q Consensus 329 G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~ 363 (722)
|+..+.| .|..++...++.+.+ .++|++|.
T Consensus 142 gl~V~~P---sd~~d~~~~l~~a~~--~~~Pv~ir 171 (327)
T CHL00144 142 GLQIVAC---STPYNAKGLLKSAIR--SNNPVIFF 171 (327)
T ss_pred CCEEEEe---CCHHHHHHHHHHHHh--CCCcEEEE
Confidence 6777777 677788888888776 47899885
No 369
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=29.59 E-value=1.7e+02 Score=28.97 Aligned_cols=84 Identities=12% Similarity=0.089 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhhhCCCCEEEEecCCCcccccCC-CCCCCCcc-------ccccEEEEEeCCcEEEEEechhhHHHHHHH
Q 004946 536 EDELVDMVATVASIDDRPVCFRYPRGAIVRTDLP-GYRGIPIE-------EIGKGKVLVEGKDVALLGYGAMVQNCLKAR 607 (722)
Q Consensus 536 ~~E~~~~l~~a~~~~~~Pv~ir~~r~~~~~~~~p-~~~~~~~~-------~igk~~vl~eG~dv~lva~Gs~v~~aleAa 607 (722)
-+|...++.+|+- .++-+||.--... ...... .....++. ...+...+.+-.+|.|++-.+.-..|.+.+
T Consensus 24 iedaARlLAQA~v-geG~IYi~G~~Em-~~v~~~Al~g~E~l~~~k~l~~~~~~~~~lt~~DRVllfs~~~~~~e~~~~a 101 (172)
T PF10740_consen 24 IEDAARLLAQAIV-GEGTIYIYGFGEM-EAVEAEALYGAEPLPSAKRLSEDLENFDELTETDRVLLFSPFSTDEEAVALA 101 (172)
T ss_dssp HHHHHHHHHHHHH-TT--EEEEE-GGG-GGGHHHHHCSTT--TTEEE--TT--------TT-EEEEEES-S--HHHHHHH
T ss_pred HHHHHHHHHHHHh-cCCEEEEEecChH-HHHHHHHHcCCCCCchhhcCcccccccccccccceEEEEeCCCCCHHHHHHH
Confidence 3678889999875 7888888532221 111000 00011110 011111233345899999999999999999
Q ss_pred HHHHhcCCcEEEee
Q 004946 608 ALLSKLGIDVTVAD 621 (722)
Q Consensus 608 ~~L~~~Gi~v~Vid 621 (722)
+.|.++|+.+-+|.
T Consensus 102 ~~L~~~gi~~v~Vs 115 (172)
T PF10740_consen 102 KQLIEQGIPFVGVS 115 (172)
T ss_dssp HHHHHHT--EEEEE
T ss_pred HHHHHCCCCEEEEE
Confidence 99999999999888
No 370
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=29.35 E-value=1.2e+02 Score=28.21 Aligned_cols=31 Identities=19% Similarity=0.155 Sum_probs=22.7
Q ss_pred chhhHHHHHHHHHHHhcCCcEEEeecCcccc
Q 004946 597 GAMVQNCLKARALLSKLGIDVTVADARFCKP 627 (722)
Q Consensus 597 Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkP 627 (722)
|+.-..|.+.++.|+++|+++.++++....+
T Consensus 8 G~te~~A~~ia~~l~~~g~~~~~~~~~~~~~ 38 (143)
T PF00258_consen 8 GNTEKMAEAIAEGLRERGVEVRVVDLDDFDD 38 (143)
T ss_dssp SHHHHHHHHHHHHHHHTTSEEEEEEGGGSCH
T ss_pred hhHHHHHHHHHHHHHHcCCceeeechhhhhh
Confidence 4444556666777777899999999986543
No 371
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=29.34 E-value=1e+02 Score=27.98 Aligned_cols=43 Identities=16% Similarity=0.130 Sum_probs=35.8
Q ss_pred hhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcCCC
Q 004946 598 AMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHT 641 (722)
Q Consensus 598 s~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~~ 641 (722)
.....|.+|.+.|+++|+.++++|+.. .|++.+.+.++++..+
T Consensus 7 ~~C~t~rkA~~~L~~~~i~~~~~di~~-~p~t~~el~~~l~~~g 49 (114)
T TIGR00014 7 PRCSKSRNTLALLEDKGIEPEVVKYLK-NPPTKSELEAIFAKLG 49 (114)
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEeccC-CCcCHHHHHHHHHHcC
Confidence 455789999999999999999999985 7889988888776543
No 372
>PTZ00062 glutaredoxin; Provisional
Probab=28.94 E-value=2.2e+02 Score=28.89 Aligned_cols=73 Identities=15% Similarity=0.090 Sum_probs=48.3
Q ss_pred CCcEEEEEech----hhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHh-c----CCCeEEEEcCCCCCChHHHH
Q 004946 588 GKDVALLGYGA----MVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELC-Q----NHTFLITVEEGSIGGFGSHV 658 (722)
Q Consensus 588 G~dv~lva~Gs----~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~-~----~~~~vvvvEe~~~gG~gs~v 658 (722)
..+|+|++-|+ ....|..+.+.|++.|+..+.+|+.. |.+ +++.+ + .+=..|.+..-.+||+..-
T Consensus 112 ~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~----d~~-~~~~l~~~sg~~TvPqVfI~G~~IGG~d~l- 185 (204)
T PTZ00062 112 NHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFE----DPD-LREELKVYSNWPTYPQLYVNGELIGGHDII- 185 (204)
T ss_pred cCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCC----CHH-HHHHHHHHhCCCCCCeEEECCEEEcChHHH-
Confidence 45678888773 57889999999999999999999873 332 22222 1 2225566776667887633
Q ss_pred HHHHHhcCC
Q 004946 659 SHFIALDGL 667 (722)
Q Consensus 659 ~~~l~~~~~ 667 (722)
..+.++|-
T Consensus 186 -~~l~~~G~ 193 (204)
T PTZ00062 186 -KELYESNS 193 (204)
T ss_pred -HHHHHcCC
Confidence 23555554
No 373
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=28.85 E-value=1.1e+02 Score=27.73 Aligned_cols=42 Identities=24% Similarity=0.251 Sum_probs=34.5
Q ss_pred hhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcCC
Q 004946 598 AMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNH 640 (722)
Q Consensus 598 s~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~ 640 (722)
+....|.+|.+.|++.|+.++++|+.- .|++.+.+.++++..
T Consensus 7 ~~C~t~rkA~~~L~~~~i~~~~~di~~-~~~t~~el~~~l~~~ 48 (112)
T cd03034 7 PRCSKSRNALALLEEAGIEPEIVEYLK-TPPTAAELRELLAKL 48 (112)
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEeccc-CCcCHHHHHHHHHHc
Confidence 355788999999999999999999875 788888887776544
No 374
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=28.45 E-value=2.5e+02 Score=21.75 Aligned_cols=63 Identities=24% Similarity=0.287 Sum_probs=38.2
Q ss_pred EEEEEechhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcC-CCeEEEEcCCCCCChH
Q 004946 591 VALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQN-HTFLITVEEGSIGGFG 655 (722)
Q Consensus 591 v~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~-~~~vvvvEe~~~gG~g 655 (722)
|+|.+.. ....|..|...|++.++....+|+..-.. -.+.+.+.... +-.++++.+...||+.
T Consensus 2 v~ly~~~-~Cp~C~~~~~~L~~~~i~~~~~di~~~~~-~~~~l~~~~~~~~~P~~~~~~~~igg~~ 65 (72)
T cd02066 2 VVVFSKS-TCPYCKRAKRLLESLGIEFEEIDILEDGE-LREELKELSGWPTVPQIFINGEFIGGYD 65 (72)
T ss_pred EEEEECC-CCHHHHHHHHHHHHcCCcEEEEECCCCHH-HHHHHHHHhCCCCcCEEEECCEEEecHH
Confidence 4444433 35789999999999999999999875322 11223333222 2245666555578874
No 375
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=28.38 E-value=85 Score=30.72 Aligned_cols=58 Identities=26% Similarity=0.430 Sum_probs=34.9
Q ss_pred EeCCcEEEEEechhhHHHHHHHHHHHhcCCcEEEeecCccccchH-------HHHHHHhcCCCeEEEE
Q 004946 586 VEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDI-------KLVRELCQNHTFLITV 646 (722)
Q Consensus 586 ~eG~dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~-------e~i~~~~~~~~~vvvv 646 (722)
-.|+.++|++||..-.-+ |+.|+..|.+|.|.+...++-+.. ..+.+.++..+.+|+.
T Consensus 21 l~Gk~vvV~GYG~vG~g~---A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~~~~~a~~~adi~vta 85 (162)
T PF00670_consen 21 LAGKRVVVIGYGKVGKGI---ARALRGLGARVTVTEIDPIRALQAAMDGFEVMTLEEALRDADIFVTA 85 (162)
T ss_dssp -TTSEEEEE--SHHHHHH---HHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE-HHHHTTT-SEEEE-
T ss_pred eCCCEEEEeCCCcccHHH---HHHHhhCCCEEEEEECChHHHHHhhhcCcEecCHHHHHhhCCEEEEC
Confidence 457889999999987644 566777899999999875554322 2245566666666654
No 376
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=28.33 E-value=1.1e+02 Score=28.51 Aligned_cols=41 Identities=27% Similarity=0.280 Sum_probs=34.4
Q ss_pred hhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcC
Q 004946 598 AMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQN 639 (722)
Q Consensus 598 s~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~ 639 (722)
.....|.+|.+.|+++|+..+++|..- .|++.+.|.+.++.
T Consensus 9 p~Cst~RKA~~~L~~~gi~~~~~d~~~-~p~t~~eL~~~l~~ 49 (126)
T TIGR01616 9 PGCANNARQKAALKASGHDVEVQDILK-EPWHADTLRPYFGN 49 (126)
T ss_pred CCCHHHHHHHHHHHHCCCCcEEEeccC-CCcCHHHHHHHHHH
Confidence 345789999999999999999999985 78888888777654
No 377
>PRK11544 hycI hydrogenase 3 maturation protease; Provisional
Probab=27.58 E-value=2.6e+02 Score=26.93 Aligned_cols=56 Identities=14% Similarity=0.056 Sum_probs=35.8
Q ss_pred cEEEEEechhh----HHHHHHHHHHHhcC-CcEEEeecCccccchHHHHHHHhc-CCCeEEEEcC
Q 004946 590 DVALLGYGAMV----QNCLKARALLSKLG-IDVTVADARFCKPLDIKLVRELCQ-NHTFLITVEE 648 (722)
Q Consensus 590 dv~lva~Gs~v----~~aleAa~~L~~~G-i~v~Vidl~~lkPld~e~i~~~~~-~~~~vvvvEe 648 (722)
+++|+++|+.. .....+++.|++.. -.++++|.-+ -|++. +..+.. +.+.+|+|+.
T Consensus 2 ~~lVlGiGN~L~gDDGvG~~v~~~L~~~~~~~v~vid~gt-~~~~~--~~~i~~~~~d~vIiVDA 63 (156)
T PRK11544 2 TDVVLTVGNSMMGDDGAGPLLAEKLAAAPKGGWVVIDGGS-APEND--IVAIRELRPERLLIVDA 63 (156)
T ss_pred cEEEEEeCccccccCcHHHHHHHHHhccCCCCeEEEECCC-CHHHH--HHHHHhcCCCEEEEEEC
Confidence 46789999877 35667788887652 2588999888 45443 222211 3467777775
No 378
>TIGR00130 frhD coenzyme F420-reducing hydrogenase delta subunit (putative coenzyme F420 hydrogenase processing subunit). FrhD is not part of the active FRH heterotrimer, but is probably a protease required for maturation. Alternative name: 8-hydroxy-5-deazaflavin (F420) reducing hydrogenase (FRH) subunit delta.
Probab=27.47 E-value=2e+02 Score=27.60 Aligned_cols=58 Identities=19% Similarity=0.225 Sum_probs=37.5
Q ss_pred CcEEEEEechhhH----HHHHHHHHHHhcC----CcEEEeecCccccchHHHHHH--HhcCCCeEEEEcCC
Q 004946 589 KDVALLGYGAMVQ----NCLKARALLSKLG----IDVTVADARFCKPLDIKLVRE--LCQNHTFLITVEEG 649 (722)
Q Consensus 589 ~dv~lva~Gs~v~----~aleAa~~L~~~G----i~v~Vidl~~lkPld~e~i~~--~~~~~~~vvvvEe~ 649 (722)
++++|+++|+... ....+++.|++.+ -+++++|..+.-| +.+.. ...+.+.+|+|+..
T Consensus 3 ~~ilVlGiGN~l~gDDGvG~~v~~~L~~~~~~~~~~v~vid~gt~~~---~~l~~~~~~~~~d~vIivDA~ 70 (153)
T TIGR00130 3 HEILVVGCGNILFGDDGFGPAVIEYLKENGVEKPDNVCLIDAGTGAP---HFVFTLIPQSKWKKIIVVDIA 70 (153)
T ss_pred ceEEEEEeCccccccCcHhHHHHHHHHHhCCCCCCCeEEEECCCcHH---HHHHHHhhhcCCCEEEEEEcc
Confidence 4689999999873 5667888887432 2488998776433 11111 23567788888763
No 379
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=27.24 E-value=50 Score=36.83 Aligned_cols=76 Identities=24% Similarity=0.317 Sum_probs=51.0
Q ss_pred ccccccccccccccchhhhhhcccccccccccccccCCCCCCcccCcceeeeccccCCCCCCccCCCCCCccccCCCCch
Q 004946 10 LELPLTAHCHGTLDQRKIEFLSSNISRELEISRINLCPSSSSITSSKLVTVSRICALPDIDDFFWDKEPTPILDLVENPL 89 (722)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~p~ 89 (722)
+.+|+-.|||-|-.--..-+|. +=|-++|+|.|+-|+-|...|.+-+-+=-.+.... +|.
T Consensus 198 ~~~pv~lHtH~TsG~a~m~ylk---AvEAGvD~iDTAisp~S~gtsqP~tEtmv~aL~gt-~yD---------------- 257 (472)
T COG5016 198 LPVPVELHTHATSGMAEMTYLK---AVEAGVDGIDTAISPLSGGTSQPATETMVAALRGT-GYD---------------- 257 (472)
T ss_pred cCCeeEEecccccchHHHHHHH---HHHhCcchhhhhhccccCCCCCCcHHHHHHHhcCC-CCC----------------
Confidence 3589999999997766555553 45889999999988877777666554333333333 441
Q ss_pred hccCCCHHHHHHHHHHHH
Q 004946 90 RLKSLTIKELKQLAVEIR 107 (722)
Q Consensus 90 ~~~~l~~~~l~~la~eiR 107 (722)
..|+++.|++.++..|
T Consensus 258 --tgld~~~l~~~~~yf~ 273 (472)
T COG5016 258 --TGLDLELLEEIAEYFR 273 (472)
T ss_pred --ccccHHHHHHHHHHHH
Confidence 3566677777766665
No 380
>TIGR02691 arsC_pI258_fam arsenate reductase (thioredoxin). This family describes the well-studied thioredoxin-dependent arsenate reductase of Staphylococcus aureaus plasmid pI258 and other mechanistically similar arsenate reductases. The mechanism involves an intramolecular disulfide bond cascade, and aligned members of this family have four absolutely conserved Cys residues. This group of arsenate reductases belongs to the low-molecular weight protein-tyrosine phosphatase family (pfam01451), as does a group of glutathione/glutaredoxin type arsenate reductases (TIGR02689). At least two other, non-homologous groups of arsenate reductases involved in arsenical resistance are also known. This enzyme reduces arsenate to arsenite, which may be more toxic but which is more easily exported.
Probab=26.79 E-value=1.5e+02 Score=27.63 Aligned_cols=87 Identities=14% Similarity=0.135 Sum_probs=48.0
Q ss_pred HHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcCCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCcc
Q 004946 604 LKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNY 683 (722)
Q Consensus 604 leAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~v~~ig~~d~f 683 (722)
-.|++.|++.||++.-- .-+.++.+. +...+.||+++++.. ++...+ ..........++|.+
T Consensus 41 ~~a~~~l~e~Gid~~~~---~~~~l~~~~----~~~~D~vitm~~~~~-----~~~~~~------p~~~~~~~w~i~DP~ 102 (129)
T TIGR02691 41 PNAVKAMKEVGIDISNQ---TSDLIDLDI----LNKADLVVTLCGDAR-----DKCPAT------PPHVKREHWGLDDPA 102 (129)
T ss_pred HHHHHHHHHcCCCcCCc---ccccCChhh----cccCCEEEEeCchhc-----cCCCcc------CCCCeEEECCCCCCC
Confidence 35666778889986422 223344332 245678999975421 000000 011222344778888
Q ss_pred ccCCCHHHHHHHcCCCHHHHHHHHH
Q 004946 684 IEHASPTQQLALAGLTGHHIAATAL 708 (722)
Q Consensus 684 ~~~g~~~~l~~~~gl~~~~I~~~i~ 708 (722)
+..|+.++.++.|--.-+.|..++.
T Consensus 103 ~~~g~~~~~~~~~~~~~~~I~~~v~ 127 (129)
T TIGR02691 103 RAEGTEEEKWAVFRRVRDEIKERVK 127 (129)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888888887777444455554443
No 381
>cd05126 Mth938 Mth938 domain. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. The function of the protein has not been determined.
Probab=26.51 E-value=64 Score=29.75 Aligned_cols=56 Identities=25% Similarity=0.279 Sum_probs=35.5
Q ss_pred EEeCCcEEEEEechhhH--HHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcCCCeEE
Q 004946 585 LVEGKDVALLGYGAMVQ--NCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLI 644 (722)
Q Consensus 585 l~eG~dv~lva~Gs~v~--~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~~~vv 644 (722)
+..+.+++||++|.... .--++.+.|++.||.+.+.|-... -.+...++.+.++|.
T Consensus 55 l~~~peivliGTG~~~~~~~~~~~~~~l~~~Gi~ve~m~T~aA----crTYN~L~~EgRrV~ 112 (117)
T cd05126 55 LEEGVEVIVIGTGQSGALKVPPETVEKLEKRGVEVLVLPTEEA----VKRYNELAGKGRRVL 112 (117)
T ss_pred HhcCCCEEEEcCCCCccccCCHHHHHHHHhcCCEEEEcChHHH----HHHHHHHHhCCCeEE
Confidence 44568899999998743 345556678888888777664321 133445555555554
No 382
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=26.49 E-value=1.1e+02 Score=34.05 Aligned_cols=48 Identities=23% Similarity=0.160 Sum_probs=36.6
Q ss_pred EechhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcCCCeEEE
Q 004946 595 GYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLIT 645 (722)
Q Consensus 595 a~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~~~vvv 645 (722)
.||+.-..|..+++-|.+.|++|.++++..- |.+.|.+.+.+.+.+++
T Consensus 256 myg~T~~ma~aiaegl~~~gv~v~~~~~~~~---~~~eI~~~i~~a~~~vv 303 (388)
T COG0426 256 MYGNTEKMAQAIAEGLMKEGVDVEVINLEDA---DPSEIVEEILDAKGLVV 303 (388)
T ss_pred ccCCHHHHHHHHHHHhhhcCCceEEEEcccC---CHHHHHHHHhhcceEEE
Confidence 5788888888889999999999999999876 55556555555555543
No 383
>cd00518 H2MP Hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). These enzymes belong to the peptidase family M52. Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved in processing of HypE, the large subunit of hydrogenase 3. This cleavage is nickel dependent. This CD also includes such hydrogenase-processing proteins as HydD, HupW, and HoxW, as well as, proteins of the F420-reducing hydrogenase of methanogens (e.g., FrcD). Also included, is the Pyrococcus furiosus FrxA protein, a bifunctional endopeptidase/ sulfhydrogenase found in NADP-reducing hyperthermophiles.The Pyrococcus FrxA is not related to those found in Helicobacter pylori.
Probab=26.42 E-value=2.2e+02 Score=26.66 Aligned_cols=53 Identities=21% Similarity=0.200 Sum_probs=35.5
Q ss_pred EEEechhhH----HHHHHHHHHHhcC--CcEEEeecCccccchHHHHHHHhcCCCeEEEEcCC
Q 004946 593 LLGYGAMVQ----NCLKARALLSKLG--IDVTVADARFCKPLDIKLVRELCQNHTFLITVEEG 649 (722)
Q Consensus 593 lva~Gs~v~----~aleAa~~L~~~G--i~v~Vidl~~lkPld~e~i~~~~~~~~~vvvvEe~ 649 (722)
|+++|+... ....+++.|+++. -.++++|..+.- .+.+ ..+...+.+|+|+-.
T Consensus 2 ViGiGN~l~~DDGvG~~v~~~L~~~~~~~~v~~id~gt~~---~~l~-~~l~~~d~viiVDA~ 60 (139)
T cd00518 2 VLGIGNPLRGDDGFGPAVAERLEERYLPPGVEVIDGGTLG---LELL-DLLEGADRVIIVDAV 60 (139)
T ss_pred EEEECCcccccCcHHHHHHHHHHhcCCCCCeEEEECCCCH---HHHH-HHHhcCCeEEEEECc
Confidence 678888762 4667788887763 468899988762 2333 344457788888764
No 384
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=26.20 E-value=2.5e+02 Score=28.17 Aligned_cols=69 Identities=16% Similarity=0.112 Sum_probs=52.4
Q ss_pred echhhHHHHHHHHHHHhcCCcEEEeecCcc--ccc----------------h-HHHHHHHhcCCCeEEEEcCCCCCChHH
Q 004946 596 YGAMVQNCLKARALLSKLGIDVTVADARFC--KPL----------------D-IKLVRELCQNHTFLITVEEGSIGGFGS 656 (722)
Q Consensus 596 ~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~l--kPl----------------d-~e~i~~~~~~~~~vvvvEe~~~gG~gs 656 (722)
+|.+...+.++++.+++.|+++++++++-. +|. | .+.+.+.+...+.+|+.=.-+.|++.+
T Consensus 13 ~G~t~~l~~~~~~g~~~~G~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l~~aD~iI~gsPvy~g~vsa 92 (207)
T COG0655 13 NGNTAKLAEAVLEGAEEAGAEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKLLEADGIIFGSPVYFGNVSA 92 (207)
T ss_pred CCcHHHHHHHHHHHHHHcCCEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHHHHCCEEEEeCCeecCCchH
Confidence 578888888889999989999999999843 232 2 255555566677787777666799999
Q ss_pred HHHHHHHh
Q 004946 657 HVSHFIAL 664 (722)
Q Consensus 657 ~v~~~l~~ 664 (722)
.+..++.+
T Consensus 93 ~~K~fiDR 100 (207)
T COG0655 93 QMKAFIDR 100 (207)
T ss_pred HHHHHHhh
Confidence 98888876
No 385
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=25.89 E-value=2.6e+02 Score=29.13 Aligned_cols=73 Identities=25% Similarity=0.251 Sum_probs=47.7
Q ss_pred ccccEEEEE-eCCcEEEEEechhhHHHHHHHHHHHhcC--CcEEEee-cCccc-cchHHHHHHHhcCCCeEEEEcCCCC
Q 004946 578 EIGKGKVLV-EGKDVALLGYGAMVQNCLKARALLSKLG--IDVTVAD-ARFCK-PLDIKLVRELCQNHTFLITVEEGSI 651 (722)
Q Consensus 578 ~igk~~vl~-eG~dv~lva~Gs~v~~aleAa~~L~~~G--i~v~Vid-l~~lk-Pld~e~i~~~~~~~~~vvvvEe~~~ 651 (722)
|+|.+.... .+..+.+|+-|+.+......++.+.+.| -+|.++- .++-+ .+..+.+.+...+ ...+++++++.
T Consensus 96 P~G~~~~~~~~~~~vlliagGtG~aPl~~i~~~~~~~~~~~~V~~~~G~~~~~dl~~~~el~~~~~~-~~~~~~~~~~~ 173 (252)
T COG0543 96 PLGNGFLREKIGKPVLLIAGGTGIAPLYAIAKELKEKGDANKVTLLYGARTAKDLLLLDELEELAEK-EVHPVTDDGWK 173 (252)
T ss_pred CCCCCccccccCCcEEEEecccCHhHHHHHHHHHHhcCCCceEEEEEeccChhhcccHHHHHHhhcC-cEEEEECCCCC
Confidence 445554332 2445999999999999999999998888 5666554 33322 1334555555544 67778887664
No 386
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=25.72 E-value=1.6e+02 Score=26.58 Aligned_cols=41 Identities=20% Similarity=0.250 Sum_probs=34.1
Q ss_pred hhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcC
Q 004946 598 AMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQN 639 (722)
Q Consensus 598 s~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~ 639 (722)
.....|.+|.+.|+++|+..+++|+.- .|++.+.+.+.++.
T Consensus 8 ~~C~~c~ka~~~L~~~gi~~~~idi~~-~~~~~~el~~~~~~ 48 (115)
T cd03032 8 PSCSSCRKAKQWLEEHQIPFEERNLFK-QPLTKEELKEILSL 48 (115)
T ss_pred CCCHHHHHHHHHHHHCCCceEEEecCC-CcchHHHHHHHHHH
Confidence 566889999999999999999999864 67888888777654
No 387
>PHA03050 glutaredoxin; Provisional
Probab=25.53 E-value=2.9e+02 Score=24.85 Aligned_cols=68 Identities=19% Similarity=0.288 Sum_probs=44.1
Q ss_pred CCcEEEEEechhhHHHHHHHHHHHhcCC---cEEEeecCccccchH---HHHHHHhc-CCCeEEEEcCCCCCChHHH
Q 004946 588 GKDVALLGYGAMVQNCLKARALLSKLGI---DVTVADARFCKPLDI---KLVRELCQ-NHTFLITVEEGSIGGFGSH 657 (722)
Q Consensus 588 G~dv~lva~Gs~v~~aleAa~~L~~~Gi---~v~Vidl~~lkPld~---e~i~~~~~-~~~~vvvvEe~~~gG~gs~ 657 (722)
..+|+|.+..+ ...|..|.+.|++.|+ ..+++|+.-..+ +. +.+.+.-. .+=+.|++..-.+||+...
T Consensus 12 ~~~V~vys~~~-CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~-~~~~~~~l~~~tG~~tVP~IfI~g~~iGG~ddl 86 (108)
T PHA03050 12 NNKVTIFVKFT-CPFCRNALDILNKFSFKRGAYEIVDIKEFKP-ENELRDYFEQITGGRTVPRIFFGKTSIGGYSDL 86 (108)
T ss_pred cCCEEEEECCC-ChHHHHHHHHHHHcCCCcCCcEEEECCCCCC-CHHHHHHHHHHcCCCCcCEEEECCEEEeChHHH
Confidence 45677776554 6789999999999898 788999874222 22 23333322 2335677776668998644
No 388
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=25.46 E-value=1.1e+02 Score=27.72 Aligned_cols=53 Identities=25% Similarity=0.179 Sum_probs=34.7
Q ss_pred CCcEEEEEechhh-HHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcCCCeEE
Q 004946 588 GKDVALLGYGAMV-QNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLI 644 (722)
Q Consensus 588 G~dv~lva~Gs~v-~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~~~vv 644 (722)
..+++||++|... ..--+..+.|+++||.+++.|-..- -.+...+..+.++|.
T Consensus 52 ~peiliiGTG~~~~~~~~~~~~~l~~~gi~vE~m~T~~A----crTyN~L~~EgR~V~ 105 (109)
T cd05560 52 QPEVILLGTGERQRFPPPALLAPLLARGIGVEVMDTQAA----CRTYNILMGEGRRVV 105 (109)
T ss_pred CCCEEEEecCCCCCcCCHHHHHHHHHcCCeEEEECHHHH----HHHHHHHHhCCCcEE
Confidence 4689999999865 2334555678899999999986521 133344555555443
No 389
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=25.37 E-value=1.2e+02 Score=25.05 Aligned_cols=54 Identities=20% Similarity=0.312 Sum_probs=34.1
Q ss_pred hhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcCCCeEEEEcCCCCCChHHHHHHHHHhcC
Q 004946 599 MVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIALDG 666 (722)
Q Consensus 599 ~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~ 666 (722)
..+.|+.|-+.|++.|++++++-.+ . ++-...+..+-++... -+.+...+.+++
T Consensus 10 st~~a~~~ek~lk~~gi~~~liP~P------~----~i~~~CG~al~~~~~d----~~~i~~~l~~~~ 63 (73)
T PF11823_consen 10 STHDAMKAEKLLKKNGIPVRLIPTP------R----EISAGCGLALRFEPED----LEKIKEILEENG 63 (73)
T ss_pred CHHHHHHHHHHHHHCCCcEEEeCCC------h----hccCCCCEEEEEChhh----HHHHHHHHHHCC
Confidence 4567888889999999999998554 3 2233455555555432 234445555554
No 390
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=24.98 E-value=1.4e+02 Score=26.30 Aligned_cols=42 Identities=24% Similarity=0.207 Sum_probs=34.5
Q ss_pred hhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcCC
Q 004946 598 AMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNH 640 (722)
Q Consensus 598 s~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~ 640 (722)
.....|.+|.+.|+++|+..+.+|+.- .|++.+.+.++....
T Consensus 7 ~~C~~c~ka~~~L~~~~i~~~~idi~~-~~~~~~~l~~~~~~~ 48 (105)
T cd02977 7 PNCSTSRKALAWLEEHGIEYEFIDYLK-EPPTKEELKELLAKL 48 (105)
T ss_pred CCCHHHHHHHHHHHHcCCCcEEEeecc-CCCCHHHHHHHHHhc
Confidence 456789999999999999999999873 678888887776554
No 391
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=24.86 E-value=1.6e+02 Score=27.60 Aligned_cols=43 Identities=14% Similarity=0.188 Sum_probs=35.1
Q ss_pred chhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcCC
Q 004946 597 GAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNH 640 (722)
Q Consensus 597 Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~ 640 (722)
-.....|.+|.+.|+++|+..+++|+.. .|++.+.+.+.++..
T Consensus 7 ~~~C~~crkA~~~L~~~~i~~~~~d~~~-~~~s~~eL~~~l~~~ 49 (132)
T PRK13344 7 ISSCTSCKKAKTWLNAHQLSYKEQNLGK-EPLTKEEILAILTKT 49 (132)
T ss_pred CCCCHHHHHHHHHHHHcCCCeEEEECCC-CCCCHHHHHHHHHHh
Confidence 3556789999999999999999999874 688888887776553
No 392
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=24.83 E-value=1.8e+02 Score=29.78 Aligned_cols=98 Identities=14% Similarity=0.177 Sum_probs=61.5
Q ss_pred HHhcCCCCcEE-EeeCCHHHHHHHHHHHhhhCCCCEEEEecCCCcccccCCCCCCCCccccccEEEEEeCCcEEEEEech
Q 004946 520 TFMSCLPNMIV-MAPSDEDELVDMVATVASIDDRPVCFRYPRGAIVRTDLPGYRGIPIEEIGKGKVLVEGKDVALLGYGA 598 (722)
Q Consensus 520 a~~~~iP~l~V-~~Psd~~E~~~~l~~a~~~~~~Pv~ir~~r~~~~~~~~p~~~~~~~~~igk~~vl~eG~dv~lva~Gs 598 (722)
.|+..+||..+ ...++.+|++.++... .|-.|.++-- +|+..+-.+ +...+--+...||.+|+.-+
T Consensus 18 ~yv~~~~gF~~vg~A~~~~ea~~~i~~~-----~pDLILLDiY------mPd~~Gi~l--L~~ir~~~~~~DVI~iTAA~ 84 (224)
T COG4565 18 RYVKQIPGFSVVGTAGTLEEAKMIIEEF-----KPDLILLDIY------MPDGNGIEL--LPELRSQHYPVDVIVITAAS 84 (224)
T ss_pred HHHHhCCCceEEEeeccHHHHHHHHHhh-----CCCEEEEeec------cCCCccHHH--HHHHHhcCCCCCEEEEeccc
Confidence 67888999876 5667888888777533 4566665432 333222222 12222122356999999777
Q ss_pred hhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcC
Q 004946 599 MVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQN 639 (722)
Q Consensus 599 ~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~ 639 (722)
-+....+|. ..+|+|-- ||||..+.+.+.+..
T Consensus 85 d~~tI~~al--------r~Gv~DYL-iKPf~~eRl~~aL~~ 116 (224)
T COG4565 85 DMETIKEAL--------RYGVVDYL-IKPFTFERLQQALTR 116 (224)
T ss_pred hHHHHHHHH--------hcCchhhe-ecceeHHHHHHHHHH
Confidence 777666554 36788864 899998888776643
No 393
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=24.66 E-value=2e+02 Score=31.48 Aligned_cols=56 Identities=25% Similarity=0.406 Sum_probs=37.1
Q ss_pred eCCcEEEEEechhhHHHHHHHHHHHhcCCcEEEeecCccccchH--------HHHHHHhcCCCeEEEE
Q 004946 587 EGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDI--------KLVRELCQNHTFLITV 646 (722)
Q Consensus 587 eG~dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~--------e~i~~~~~~~~~vvvv 646 (722)
.|+.|.||++|++-+. .|..|+..|.+|.+.+-+ -+..+. ..+.+++++.+.|++.
T Consensus 15 kgKtVGIIG~GsIG~a---mA~nL~d~G~~ViV~~r~-~~s~~~A~~~G~~v~sl~Eaak~ADVV~ll 78 (335)
T PRK13403 15 QGKTVAVIGYGSQGHA---QAQNLRDSGVEVVVGVRP-GKSFEVAKADGFEVMSVSEAVRTAQVVQML 78 (335)
T ss_pred CcCEEEEEeEcHHHHH---HHHHHHHCcCEEEEEECc-chhhHHHHHcCCEECCHHHHHhcCCEEEEe
Confidence 3678999999999874 356677789999888643 222111 1356677777665553
No 394
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=24.60 E-value=5.7e+02 Score=26.87 Aligned_cols=94 Identities=21% Similarity=0.252 Sum_probs=50.0
Q ss_pred CcEEEEEechhhHHHHHHHHHHHhc-CCcEEEeecCc---------cccchHHHHHHHhcCCCeEEEEcCCCCCChHHHH
Q 004946 589 KDVALLGYGAMVQNCLKARALLSKL-GIDVTVADARF---------CKPLDIKLVRELCQNHTFLITVEEGSIGGFGSHV 658 (722)
Q Consensus 589 ~dv~lva~Gs~v~~aleAa~~L~~~-Gi~v~Vidl~~---------lkPld~e~i~~~~~~~~~vvvvEe~~~gG~gs~v 658 (722)
.+.++|+.|..-.. ++.+.|++. +..+.|+.... +.+|+.+.+.+++...+.+|+ .+|++. +
T Consensus 192 ~~~iLv~~gg~~~~--~~~~~l~~~~~~~~~v~g~~~~~~~~~ni~~~~~~~~~~~~~m~~ad~vIs-----~~G~~t-~ 263 (318)
T PF13528_consen 192 EPKILVYFGGGGPG--DLIEALKALPDYQFIVFGPNAADPRPGNIHVRPFSTPDFAELMAAADLVIS-----KGGYTT-I 263 (318)
T ss_pred CCEEEEEeCCCcHH--HHHHHHHhCCCCeEEEEcCCcccccCCCEEEeecChHHHHHHHHhCCEEEE-----CCCHHH-H
Confidence 45566777665543 444445443 46666664443 566776677777878887773 466653 2
Q ss_pred HHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcC
Q 004946 659 SHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAG 697 (722)
Q Consensus 659 ~~~l~~~~~~~~~~~v~~ig~~d~f~~~g~~~~l~~~~g 697 (722)
.+.+.. +.|+..+-.+ .+.+.--..+.+++.|
T Consensus 264 ~Ea~~~------g~P~l~ip~~-~~~EQ~~~a~~l~~~G 295 (318)
T PF13528_consen 264 SEALAL------GKPALVIPRP-GQDEQEYNARKLEELG 295 (318)
T ss_pred HHHHHc------CCCEEEEeCC-CCchHHHHHHHHHHCC
Confidence 343331 2344333322 2333333445566666
No 395
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=24.57 E-value=3e+02 Score=26.39 Aligned_cols=67 Identities=19% Similarity=0.223 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcC-----CCeEEEEcCCCCCChHHHHHHHHHhcCCC
Q 004946 599 MVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQN-----HTFLITVEEGSIGGFGSHVSHFIALDGLL 668 (722)
Q Consensus 599 ~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~-----~~~vvvvEe~~~gG~gs~v~~~l~~~~~~ 668 (722)
....|..|.+.|++.||+.+.+|+.. .+--.+.+++.... +=+.|+|....+||..+- ..+.++|-|
T Consensus 15 t~~~C~~ak~iL~~~~V~~~e~DVs~-~~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del--~~L~e~G~L 86 (147)
T cd03031 15 TFEDCNNVRAILESFRVKFDERDVSM-DSGFREELRELLGAELKAVSLPRVFVDGRYLGGAEEV--LRLNESGEL 86 (147)
T ss_pred cChhHHHHHHHHHHCCCcEEEEECCC-CHHHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHH--HHHHHcCCH
Confidence 56889999999999999999999873 22112334444332 335677887778886433 235555543
No 396
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=23.90 E-value=3.1e+02 Score=21.20 Aligned_cols=28 Identities=25% Similarity=0.273 Sum_probs=24.4
Q ss_pred hhhHHHHHHHHHHHhcCCcEEEeecCcc
Q 004946 598 AMVQNCLKARALLSKLGIDVTVADARFC 625 (722)
Q Consensus 598 s~v~~aleAa~~L~~~Gi~v~Vidl~~l 625 (722)
.....|..|.+.|++.|++.+++|+..-
T Consensus 7 ~~C~~C~~~~~~L~~~~i~y~~~dv~~~ 34 (60)
T PF00462_consen 7 PGCPYCKKAKEFLDEKGIPYEEVDVDED 34 (60)
T ss_dssp TTSHHHHHHHHHHHHTTBEEEEEEGGGS
T ss_pred CCCcCHHHHHHHHHHcCCeeeEcccccc
Confidence 4557899999999999999999999864
No 397
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=23.80 E-value=4.6e+02 Score=28.57 Aligned_cols=31 Identities=23% Similarity=0.312 Sum_probs=23.9
Q ss_pred CceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEEEE
Q 004946 329 GLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHV 364 (722)
Q Consensus 329 G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v 364 (722)
|+.++.| .|..++..+++.+.+ .++|++|..
T Consensus 142 ~l~V~~P---~d~~e~~~~l~~a~~--~~~Pv~i~~ 172 (327)
T PRK09212 142 GLKVVAP---YFAADCKGLLKTAIR--DPNPVIFLE 172 (327)
T ss_pred CCEEEee---CCHHHHHHHHHHHHh--CCCcEEEEE
Confidence 6777777 678888888888776 478998854
No 398
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=23.65 E-value=2e+02 Score=30.78 Aligned_cols=56 Identities=23% Similarity=0.350 Sum_probs=36.8
Q ss_pred eCCcEEEEEechhhHHHHHHHHHHHhcCCcEEEeecCc----------cccchHHHHHHHhcCCCeEEE
Q 004946 587 EGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARF----------CKPLDIKLVRELCQNHTFLIT 645 (722)
Q Consensus 587 eG~dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~----------lkPld~e~i~~~~~~~~~vvv 645 (722)
.|+.+.|+++|.+... +++.|+..|.++.|++-.. ..+++.+.+.+.+++.+.|+.
T Consensus 150 ~gk~v~IiG~G~iG~a---vA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVin 215 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMT---IARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVIN 215 (287)
T ss_pred CCCEEEEEcChHHHHH---HHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEE
Confidence 3678999999996654 4566677788888887542 223444445566666665543
No 399
>TIGR00072 hydrog_prot hydrogenase maturation protease. HycI and HoxM are well-characterized as responsible for C-terminal protease activity on their respective hydrogenase large chains. A large number of homologous proteins appear responsible for the maturation of various forms of hydrogenase.
Probab=23.37 E-value=2.7e+02 Score=26.23 Aligned_cols=53 Identities=19% Similarity=0.206 Sum_probs=33.9
Q ss_pred EEEechhh----HHHHHHHHHHHhcC---CcEEEeecCccccchHHHHHHHhcCCCeEEEEcCC
Q 004946 593 LLGYGAMV----QNCLKARALLSKLG---IDVTVADARFCKPLDIKLVRELCQNHTFLITVEEG 649 (722)
Q Consensus 593 lva~Gs~v----~~aleAa~~L~~~G---i~v~Vidl~~lkPld~e~i~~~~~~~~~vvvvEe~ 649 (722)
|+++|+.. ..-..+++.|+++. -.++++|..+.- .+.+ ..+.+++.+|+|+-.
T Consensus 2 ViGiGN~l~~DDg~G~~v~~~L~~~~~~~~~v~~id~g~~~---~~l~-~~l~~~d~viiVDA~ 61 (145)
T TIGR00072 2 VLGIGNILRGDDGFGPRVAERLEERYEFPPGVEVLDGGTLG---LELL-DAIEGADRVIVVDAV 61 (145)
T ss_pred EEEECchhcccCcHHHHHHHHHHHhcCCCCCeEEEECCCCH---HHHH-HHHhCCCEEEEEEcc
Confidence 67888876 24566777787652 458888888753 2333 333567778877753
No 400
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=23.11 E-value=5.5e+02 Score=26.48 Aligned_cols=73 Identities=14% Similarity=0.105 Sum_probs=40.9
Q ss_pred cchHHHHHHHhcCCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcC-------CC
Q 004946 627 PLDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAG-------LT 699 (722)
Q Consensus 627 Pld~e~i~~~~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~v~~ig~~d~f~~~g~~~~l~~~~g-------l~ 699 (722)
+++.+.+.++....+.++..-. ..|++..+.+.++. ..++. +. +.+...++.+... -+
T Consensus 266 ~~~~~~~~~~~~~ad~~i~~~~--~~~~~~~~~Ea~~~------G~pvI--~~-----~~~~~~~~~~~~~~g~~~~~~~ 330 (377)
T cd03798 266 AVPHEEVPAYYAAADVFVLPSL--REGFGLVLLEAMAC------GLPVV--AT-----DVGGIPEIITDGENGLLVPPGD 330 (377)
T ss_pred CCCHHHHHHHHHhcCeeecchh--hccCChHHHHHHhc------CCCEE--Ee-----cCCChHHHhcCCcceeEECCCC
Confidence 4566777777777765543222 25666667776653 23332 21 1223344444333 26
Q ss_pred HHHHHHHHHHHhhcc
Q 004946 700 GHHIAATALSLLGRT 714 (722)
Q Consensus 700 ~~~I~~~i~~ll~~~ 714 (722)
++.+++++.+++...
T Consensus 331 ~~~l~~~i~~~~~~~ 345 (377)
T cd03798 331 PEALAEAILRLLADP 345 (377)
T ss_pred HHHHHHHHHHHhcCc
Confidence 888899998887654
No 401
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=23.02 E-value=1.7e+02 Score=27.87 Aligned_cols=55 Identities=20% Similarity=0.298 Sum_probs=38.8
Q ss_pred eCCcEEEEEechhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcCCCeEEEEcCC
Q 004946 587 EGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEG 649 (722)
Q Consensus 587 eG~dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~~~vvvvEe~ 649 (722)
+|++++|++-+..+..-+ +.+|.++|..+.+.+-++. .+.+.++..+.||+.--.
T Consensus 27 ~gk~v~VvGrs~~vG~pl--a~lL~~~gatV~~~~~~t~------~l~~~v~~ADIVvsAtg~ 81 (140)
T cd05212 27 DGKKVLVVGRSGIVGAPL--QCLLQRDGATVYSCDWKTI------QLQSKVHDADVVVVGSPK 81 (140)
T ss_pred CCCEEEEECCCchHHHHH--HHHHHHCCCEEEEeCCCCc------CHHHHHhhCCEEEEecCC
Confidence 577889888777776554 5668888999999987652 345566777776665443
No 402
>PF00590 TP_methylase: Tetrapyrrole (Corrin/Porphyrin) Methylases Note this Prosite entry does not include all members of this family.; InterPro: IPR000878 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including cobalamin (vitamin B12), haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. This entry represents several tetrapyrrole methylases, which consist of two non-similar domains. These enzymes catalyse the methylation of their substrates using S-adenosyl-L-methionine as a methyl source. Enzymes in this family include: Uroporphyrinogen III methyltransferase (2.1.1.107 from EC) (SUMT), which catalyses the conversion of uroporphyrinogen III to precorrin-2 at the first branch-point of the tetrapyrrole synthesis pathway, directing the pathway towards cobalamin or sirohaem synthesis []. Precorrin-2 C20-methyltransferase CobI/CbiL (2.1.1.130 from EC), which introduces a methyl group at C-20 on precorrin-2 to produce precorrin-3A during cobalamin biosynthesis. This reaction is key to the conversion of a porphyrin-type tetrapyrrole ring to a corrin ring []. In some species, this enzyme is part of a bifunctional protein. Precorrin-4 C11-methyltransferase CobM/CbiF (2.1.1.133 from EC), which introduces a methyl group at C-11 on precorrin-4 to produce precorrin-5 during cobalamin biosynthesis []. Sirohaem synthase CysG (2.1.1.107 from EC), domains 4 and 5, which synthesizes sirohaem from uroporphyrinogen III, at the first branch-point in the tetrapyrrole biosynthetic pathway, directing the pathway towards sirohaem synthesis []. Diphthine synthase (2.1.1.98 from EC), which carries out the methylation step during the modification of a specific histidine residue of elongation factor 2 (EF-2) during diphthine synthesis. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 2ZVC_A 2ZVB_A 1WDE_A 3ND1_A 2E0K_A 2E0N_B 1VA0_B 1V9A_A 3I4T_A 3NDC_B ....
Probab=22.96 E-value=1.6e+02 Score=29.22 Aligned_cols=62 Identities=16% Similarity=0.119 Sum_probs=37.2
Q ss_pred chHHHHHHHhcCCCeEEEEcCCCCCChHHHHHHHHHhc-CCCCCCCc-eEEEecCCccccCCCHHHH
Q 004946 628 LDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIALD-GLLDSGVK-WRPIVLPDNYIEHASPTQQ 692 (722)
Q Consensus 628 ld~e~i~~~~~~~~~vvvvEe~~~gG~gs~v~~~l~~~-~~~~~~~~-v~~ig~~d~f~~~g~~~~l 692 (722)
.+...+..+.+....+++++.... -..+++.|.+. +..+.++- ..++|.|++-+.+++.+|+
T Consensus 146 ~~~~~l~~~~~~~~~~vil~~~~~---~~~i~~~L~~~~~~~~~~v~v~~~lg~~~E~i~~~tl~el 209 (210)
T PF00590_consen 146 EREKLLENLLANGDTLVILTDPRR---LAEIAELLLERLYPPDTPVAVGERLGYPDERIFRGTLEEL 209 (210)
T ss_dssp HHHHHHHHHHTTTSEEEEEESGCC---HHHHHHHHHHHSHTTTSEEEEEESTTSTTEEEEEEEHHHH
T ss_pred chHHHHHHHHhCCCEEEEEccCch---HHHHHHHHHhhCCCCCcEEEHHHhcCCCCCEEEEeEHHHc
Confidence 345666777777788888877652 45666667655 11111221 2466777777777766553
No 403
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=22.86 E-value=2.9e+02 Score=29.28 Aligned_cols=83 Identities=14% Similarity=0.128 Sum_probs=53.0
Q ss_pred HhhH-HHHHHHHHHHHhcCCCC---EEEEEeCCCc-cC---CCCCCcCcHHHHHHhcCCCCcEEEeeCCHHHHHHHHHHH
Q 004946 475 SAFL-QRAYDQVVNDVDQQRLP---VRFVITSAGL-VG---SDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATV 546 (722)
Q Consensus 475 ~~Fl-~ra~dqi~~~~a~~~lp---Vv~v~~~~G~-~G---~dG~TH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~a 546 (722)
+.|. |=.+-..+|.+++.++| +++++-+-++ .+ .+..+-..+.|.+-.-.+|.+.| .=.|+.++...++.|
T Consensus 150 gA~~~qG~~~EalNlA~l~~lp~gg~ifvveNNq~g~sT~~~~~~~~~~~~~~a~~~gip~~~V-dG~D~~aV~~a~~~A 228 (265)
T cd02016 150 AAFAGQGVVYETLNLSNLPGYTTGGTIHIVVNNQIGFTTDPRDSRSSPYCTDVAKMIGAPIFHV-NGDDPEAVVRATRLA 228 (265)
T ss_pred ccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEEecHHHhcccccHHHHHeecCCCEEEE-cCCCHHHHHHHHHHH
Confidence 3353 43333456788899998 8998865554 11 11222223566665556887754 667888888888888
Q ss_pred hhh---CCCCEEEEe
Q 004946 547 ASI---DDRPVCFRY 558 (722)
Q Consensus 547 ~~~---~~~Pv~ir~ 558 (722)
++. .++|++|-+
T Consensus 229 ~~~~r~g~gp~lIe~ 243 (265)
T cd02016 229 LEYRQKFKKDVVIDL 243 (265)
T ss_pred HHHHHhcCCCEEEEE
Confidence 763 457999854
No 404
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=22.75 E-value=3.7e+02 Score=22.03 Aligned_cols=71 Identities=15% Similarity=0.054 Sum_probs=41.9
Q ss_pred EEEEEechhhHHHHHHHHHHHhc-CCcEEEeecCccccchHHHH--HHHhcCCCeEEEEcCCCCCChHHHHHHHHHhcC
Q 004946 591 VALLGYGAMVQNCLKARALLSKL-GIDVTVADARFCKPLDIKLV--RELCQNHTFLITVEEGSIGGFGSHVSHFIALDG 666 (722)
Q Consensus 591 v~lva~Gs~v~~aleAa~~L~~~-Gi~v~Vidl~~lkPld~e~i--~~~~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~ 666 (722)
+.+++.|+....+..+...|.+. |+++.++.... .... .....+...++++-......--..+++.+.++|
T Consensus 1 i~i~g~G~s~~~a~~~~~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~d~~i~iS~sg~t~~~~~~~~~a~~~g 74 (87)
T cd04795 1 IFVIGIGGSGAIAAYFALELLELTGIEVVALIATE-----LEHASLLSLLRKGDVVIALSYSGRTEELLAALEIAKELG 74 (87)
T ss_pred CEEEEcCHHHHHHHHHHHHHhcccCCceEEeCCcH-----HHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHHHcC
Confidence 46899999999999999988887 88887665332 1111 123345556666655432111222345555544
No 405
>TIGR00012 L29 ribosomal protein L29. called L29 in prokaryotic (50S) large subunits and L35 in eukaryotic (60S) large subunits.
Probab=22.69 E-value=94 Score=24.53 Aligned_cols=26 Identities=23% Similarity=0.264 Sum_probs=22.7
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHhHh
Q 004946 90 RLKSLTIKELKQLAVEIRSELSSIVS 115 (722)
Q Consensus 90 ~~~~l~~~~l~~la~eiR~~ii~~~~ 115 (722)
|+++++.+||.+...++|+++...--
T Consensus 1 elr~~s~~EL~~~l~~lr~eLf~Lr~ 26 (55)
T TIGR00012 1 ELREKSKEELAKKLDELKKELFELRF 26 (55)
T ss_pred CHhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999887653
No 406
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=22.60 E-value=3e+02 Score=29.97 Aligned_cols=186 Identities=17% Similarity=0.130 Sum_probs=95.0
Q ss_pred CCCcCcHHHHHHhcCCCCcEEEeeCCHHHHHHH---HHHHhhhC-CCCEEEEecCCCcccccCCCCCCCCccccccEEEE
Q 004946 510 GPTQCGAFDITFMSCLPNMIVMAPSDEDELVDM---VATVASID-DRPVCFRYPRGAIVRTDLPGYRGIPIEEIGKGKVL 585 (722)
Q Consensus 510 G~TH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~---l~~a~~~~-~~Pv~ir~~r~~~~~~~~p~~~~~~~~~igk~~vl 585 (722)
||.-..-.-... .+.|++--+.|...+=+..+ +++.|+.. ..|.+|--+... .. +..-...+
T Consensus 24 GPsnl~~~V~~A-~~~~~lgh~sPe~~qIm~~v~egikyVFkT~n~~tf~isgsGh~------------g~-E~al~N~l 89 (385)
T KOG2862|consen 24 GPSNLSGRVQEA-MSRPSLGHMSPEFVQIMDEVLEGIKYVFKTANAQTFVISGSGHS------------GW-EAALVNLL 89 (385)
T ss_pred CCcCCCHHHHHh-hcCCccccCCHHHHHHHHHHHHHHHHHhccCCCceEEEecCCcc------------hH-HHHHHhhc
Confidence 555554333222 33577777777766544433 34444422 223333221111 01 11111234
Q ss_pred EeCCcEEEEEechhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcCCC-eEEEEcCC-CCCChHHHHHHHHH
Q 004946 586 VEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHT-FLITVEEG-SIGGFGSHVSHFIA 663 (722)
Q Consensus 586 ~eG~dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~~-~vvvvEe~-~~gG~gs~v~~~l~ 663 (722)
..|..+.++.+|.-.+.+ ++.++..|.+|.++-..+=.-.+-|.|.+-+..|+ .+|+|-.+ +..|.-+.+.+...
T Consensus 90 ePgd~vLv~~~G~wg~ra---~D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh~p~~vfv~hgdsSTgV~q~~~~~~g 166 (385)
T KOG2862|consen 90 EPGDNVLVVSTGTWGQRA---ADCARRYGAEVDVVEADIGQAVPLEEITEKLSQHKPKAVFVTHGDSSTGVLQDLLAISG 166 (385)
T ss_pred CCCCeEEEEEechHHHHH---HHHHHhhCceeeEEecCcccCccHHHHHHHHHhcCCceEEEEecCccccccchHHHHHH
Confidence 568889999999988764 55556669999999877777778888877665554 34444333 33455444333222
Q ss_pred hc-----CCCCCCCceEEEec----CCccc----cCCCHHHHHHHcCCCHHHHHHHHHHHhhc
Q 004946 664 LD-----GLLDSGVKWRPIVL----PDNYI----EHASPTQQLALAGLTGHHIAATALSLLGR 713 (722)
Q Consensus 664 ~~-----~~~~~~~~v~~ig~----~d~f~----~~g~~~~l~~~~gl~~~~I~~~i~~ll~~ 713 (722)
+- .++-. --|.++|. .|+|+ .+|++..+-.-.||++=.--.++.+-+..
T Consensus 167 ~lc~k~~~lllV-D~VaSlggt~F~mDewgVDvaytgSQKaL~aP~GLsiisfS~ka~~~~~~ 228 (385)
T KOG2862|consen 167 ELCHKHEALLLV-DTVASLGGTEFEMDEWGVDVAYTGSQKALGAPAGLSIISFSDKALEAIRD 228 (385)
T ss_pred HHhhcCCeEEEE-echhhcCCccceehhhcccEEEecchhhcCCCCCcceeecCHHHHHHHhh
Confidence 21 11100 00122322 13332 46777666555666654444555554443
No 407
>TIGR00142 hycI hydrogenase maturation protease HycI. Hydrogenase maturation protease is a protease that is involved in the C-terminal processing of HycE,the large subunit of hydrogenase 3 from E.Coli. This protein seems to be found in E.Coli and in Archaea.
Probab=22.47 E-value=2.7e+02 Score=26.38 Aligned_cols=55 Identities=15% Similarity=0.105 Sum_probs=32.0
Q ss_pred EEEEEechhhH----HHHHHHHHHHhcCC--cEEEeecCccccchHHHHHHHh-cCCCeEEEEcC
Q 004946 591 VALLGYGAMVQ----NCLKARALLSKLGI--DVTVADARFCKPLDIKLVRELC-QNHTFLITVEE 648 (722)
Q Consensus 591 v~lva~Gs~v~----~aleAa~~L~~~Gi--~v~Vidl~~lkPld~e~i~~~~-~~~~~vvvvEe 648 (722)
++|+++|+... ....+++.|++... .+.++|.-+. |++. +..+. .+++.+|+|+.
T Consensus 1 ~lVlGiGN~l~~DDG~G~~v~~~L~~~~~~~~v~v~d~gt~-~~~~--~~~~~~~~~d~viivDA 62 (146)
T TIGR00142 1 LVLLCVGNELMGDDGAGPYLAEKCAAAPKEENWVVINAGTV-PENF--TVAIRELRPTHILIVDA 62 (146)
T ss_pred CEEEEeCccccccCcHHHHHHHHHHhccCCCCEEEEECCCC-hHHH--HHHHHhcCCCEEEEEEC
Confidence 36788888762 45567777766432 4778887775 4433 21111 13566666664
No 408
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=22.18 E-value=2.2e+02 Score=30.58 Aligned_cols=56 Identities=23% Similarity=0.400 Sum_probs=36.5
Q ss_pred eCCcEEEEEechhhHHHHHHHHHHHhcCCcEEEeecCcc----------ccchHHHHHHHhcCCCeEEE
Q 004946 587 EGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFC----------KPLDIKLVRELCQNHTFLIT 645 (722)
Q Consensus 587 eG~dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~l----------kPld~e~i~~~~~~~~~vvv 645 (722)
.|+++.|+++|.+... ++..|+..|.++.++|-+.- ++.+.+.+.+.+++.+.||.
T Consensus 151 ~g~kvlViG~G~iG~~---~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~ 216 (296)
T PRK08306 151 HGSNVLVLGFGRTGMT---LARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFN 216 (296)
T ss_pred CCCEEEEECCcHHHHH---HHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEE
Confidence 4678999999986554 45566667989999987732 22233345556666665554
No 409
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=21.26 E-value=1.7e+02 Score=26.28 Aligned_cols=42 Identities=21% Similarity=0.336 Sum_probs=33.7
Q ss_pred hhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcCC
Q 004946 598 AMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNH 640 (722)
Q Consensus 598 s~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~ 640 (722)
.....|.+|.+.|+++|+..+.+|+.. .|++.+.+.++++..
T Consensus 7 ~~C~~c~ka~~~L~~~~i~~~~idi~~-~~~~~~el~~~~~~~ 48 (111)
T cd03036 7 PKCSTCRKAKKWLDEHGVDYTAIDIVE-EPPSKEELKKWLEKS 48 (111)
T ss_pred CCCHHHHHHHHHHHHcCCceEEecccC-CcccHHHHHHHHHHc
Confidence 456789999999999999999999875 577777777766543
No 410
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=21.19 E-value=1.2e+02 Score=24.63 Aligned_cols=31 Identities=19% Similarity=0.263 Sum_probs=26.1
Q ss_pred CCCchhccCCCHHHHHHHHHHHHHHHHHhHh
Q 004946 85 VENPLRLKSLTIKELKQLAVEIRSELSSIVS 115 (722)
Q Consensus 85 i~~p~~~~~l~~~~l~~la~eiR~~ii~~~~ 115 (722)
..-+.||..||++||++....++.+|.+.-.
T Consensus 12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~ 42 (59)
T PF06698_consen 12 HEIGEDLSLLSVEELEERIALLEAEIARLEA 42 (59)
T ss_pred cccCCCchhcCHHHHHHHHHHHHHHHHHHHH
Confidence 3456889999999999999999999887654
No 411
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=21.18 E-value=2.9e+02 Score=24.38 Aligned_cols=30 Identities=37% Similarity=0.605 Sum_probs=21.1
Q ss_pred EEEEEechhhHHHHHHHHHHHhcCCcEEEeecC
Q 004946 591 VALLGYGAMVQNCLKARALLSKLGIDVTVADAR 623 (722)
Q Consensus 591 v~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~ 623 (722)
++|+++|.... +.++.|++.++++.++|..
T Consensus 1 vvI~G~g~~~~---~i~~~L~~~~~~vvvid~d 30 (116)
T PF02254_consen 1 VVIIGYGRIGR---EIAEQLKEGGIDVVVIDRD 30 (116)
T ss_dssp EEEES-SHHHH---HHHHHHHHTTSEEEEEESS
T ss_pred eEEEcCCHHHH---HHHHHHHhCCCEEEEEECC
Confidence 57888887555 4566677777889998875
No 412
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=20.89 E-value=5.7e+02 Score=25.27 Aligned_cols=73 Identities=22% Similarity=0.294 Sum_probs=44.5
Q ss_pred cEEEEEechhhHHHHHHHHHHHhcCCcEEEeecCcc--ccchHHHHHHHhcC--CC-eEEEEcCCC-C-CChHHHHHHHH
Q 004946 590 DVALLGYGAMVQNCLKARALLSKLGIDVTVADARFC--KPLDIKLVRELCQN--HT-FLITVEEGS-I-GGFGSHVSHFI 662 (722)
Q Consensus 590 dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~l--kPld~e~i~~~~~~--~~-~vvvvEe~~-~-gG~gs~v~~~l 662 (722)
+|.||+=|... |.+|++...+ .+..+.|+...= .||.-+.+-++++. ++ .+|.+++.- . -|-|+....++
T Consensus 1 kVIlvTDGD~~--A~ravE~aa~-~iGgRCIS~S~GNPT~lsG~elV~lIk~a~~DPV~VMfDD~G~~g~G~GE~Al~~v 77 (180)
T PF14097_consen 1 KVILVTDGDEY--AKRAVEIAAK-NIGGRCISQSAGNPTPLSGEELVELIKQAPHDPVLVMFDDKGFIGEGPGEQALEYV 77 (180)
T ss_pred CEEEEECChHH--HHHHHHHHHH-HhCcEEEeccCCCCCcCCHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccHHHHHHH
Confidence 47788888765 2334443332 345556666544 45666777676654 33 455567754 4 47888888888
Q ss_pred Hhc
Q 004946 663 ALD 665 (722)
Q Consensus 663 ~~~ 665 (722)
..+
T Consensus 78 ~~h 80 (180)
T PF14097_consen 78 ANH 80 (180)
T ss_pred HcC
Confidence 765
No 413
>PRK12559 transcriptional regulator Spx; Provisional
Probab=20.86 E-value=2.2e+02 Score=26.64 Aligned_cols=41 Identities=22% Similarity=0.295 Sum_probs=34.1
Q ss_pred hhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcC
Q 004946 598 AMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQN 639 (722)
Q Consensus 598 s~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~ 639 (722)
.....|.+|.+.|+++|+..+++|+.- .|++.+.+.+.++.
T Consensus 8 ~~C~~crkA~~~L~~~gi~~~~~di~~-~~~s~~el~~~l~~ 48 (131)
T PRK12559 8 ASCASCRKAKAWLEENQIDYTEKNIVS-NSMTVDELKSILRL 48 (131)
T ss_pred CCChHHHHHHHHHHHcCCCeEEEEeeC-CcCCHHHHHHHHHH
Confidence 455789999999999999999999874 78888888777765
No 414
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=20.66 E-value=1.8e+02 Score=26.42 Aligned_cols=45 Identities=18% Similarity=0.128 Sum_probs=35.7
Q ss_pred echhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcCCC
Q 004946 596 YGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHT 641 (722)
Q Consensus 596 ~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~~ 641 (722)
+-.....|..|.+.|+++|+..+++|+. =.|+..+.+.++++..+
T Consensus 5 ~~~~C~~c~ka~~~L~~~~i~~~~idi~-~~~~~~~el~~l~~~~~ 49 (117)
T TIGR01617 5 GSPNCTTCKKARRWLEANGIEYQFIDIG-EDGPTREELLDILSLLE 49 (117)
T ss_pred eCCCCHHHHHHHHHHHHcCCceEEEecC-CChhhHHHHHHHHHHcC
Confidence 3456688999999999999999999986 36778888877765443
No 415
>PRK00306 50S ribosomal protein L29; Reviewed
Probab=20.65 E-value=1.1e+02 Score=25.19 Aligned_cols=28 Identities=25% Similarity=0.439 Sum_probs=24.2
Q ss_pred chhccCCCHHHHHHHHHHHHHHHHHhHh
Q 004946 88 PLRLKSLTIKELKQLAVEIRSELSSIVS 115 (722)
Q Consensus 88 p~~~~~l~~~~l~~la~eiR~~ii~~~~ 115 (722)
..++++++.+||.+...++|+++...--
T Consensus 3 ~~elr~ls~~eL~~~l~~lkkeL~~lR~ 30 (66)
T PRK00306 3 AKELRELSVEELNEKLLELKKELFNLRF 30 (66)
T ss_pred HHHHhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 3579999999999999999999887653
No 416
>PF04609 MCR_C: Methyl-coenzyme M reductase operon protein C; InterPro: IPR007687 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein C.; GO: 0003824 catalytic activity, 0015948 methanogenesis
Probab=20.63 E-value=1e+03 Score=25.16 Aligned_cols=88 Identities=17% Similarity=0.178 Sum_probs=58.6
Q ss_pred CCcEEEEEechh----hHHHHHHHHHHHhcCCcEEEeecC-----ccccchHHHHHHHhcCCCeEEEEcCCCCCChHHHH
Q 004946 588 GKDVALLGYGAM----VQNCLKARALLSKLGIDVTVADAR-----FCKPLDIKLVRELCQNHTFLITVEEGSIGGFGSHV 658 (722)
Q Consensus 588 G~dv~lva~Gs~----v~~aleAa~~L~~~Gi~v~Vidl~-----~lkPld~e~i~~~~~~~~~vvvvEe~~~gG~gs~v 658 (722)
|.+|++|+.... .+.+.+.++.|++.|++..++-+. .+.-+..+.+ +++..|+..|++ .|+|-++|
T Consensus 70 g~eV~vVamS~gr~Hl~~pvCdIt~~LRr~G~~tn~i~L~~G~G~~~~gl~~~E~-~~I~~Hd~AV~~----~Gn~~~~I 144 (268)
T PF04609_consen 70 GTEVAVVAMSPGRRHLPKPVCDITEYLRRAGAKTNMIGLARGSGGRIFGLTPKEI-EQINEHDLAVFH----LGNFKSCI 144 (268)
T ss_pred CCcEEEEeCCcccccCCCcHHHHHHHHHHcCCccceEEEeccCCCCccCCCHHHH-HHHhhcCEEEEE----eCCHHHHH
Confidence 789999998764 467899999999999998877654 2333344443 466788765532 48888888
Q ss_pred HHHHH--hcCCCCCCCceEEEecCCcc
Q 004946 659 SHFIA--LDGLLDSGVKWRPIVLPDNY 683 (722)
Q Consensus 659 ~~~l~--~~~~~~~~~~v~~ig~~d~f 683 (722)
..-.. .++ ...++...+.|..|
T Consensus 145 ~~K~~~ll~~---i~iPiVv~~~P~d~ 168 (268)
T PF04609_consen 145 IYKKRHLLRG---IDIPIVVCGGPVDF 168 (268)
T ss_pred HHHHHHHHhh---cCCcEEEecCCccc
Confidence 55221 112 24567777777666
No 417
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=20.60 E-value=2.8e+02 Score=31.42 Aligned_cols=56 Identities=14% Similarity=0.158 Sum_probs=37.2
Q ss_pred cEEEEEechh-hHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHh-cCCCeEEEEcC
Q 004946 590 DVALLGYGAM-VQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELC-QNHTFLITVEE 648 (722)
Q Consensus 590 dv~lva~Gs~-v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~-~~~~~vvvvEe 648 (722)
+|.|+..+.. ...|++.++.|++.|+++++ +... +.+.. .++..- .+...++++.+
T Consensus 327 ~v~v~~~~~~~~~~a~~ia~~LR~~Gi~vei-d~~~-~~l~k-~~k~A~~~~~~~viiiG~ 384 (430)
T CHL00201 327 DVYIATQGLKAQKKGWEIIQFLEKQNIKFEL-DLSS-SNFHK-QIKQAGKKRAKACIILGD 384 (430)
T ss_pred CEEEEEcCHHHHHHHHHHHHHHHhCCCeEEE-eeCC-CCHHH-HHHHHHHcCCCEEEEEec
Confidence 5777776664 46799999999999999987 4442 34433 444333 34466777665
No 418
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=20.43 E-value=2e+02 Score=26.65 Aligned_cols=37 Identities=16% Similarity=0.304 Sum_probs=24.5
Q ss_pred HHHHHHHhcCCcEEEeecCccccchHHHHHHHhcCCCeEEEEcCC
Q 004946 605 KARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEG 649 (722)
Q Consensus 605 eAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~~~vvvvEe~ 649 (722)
.|++.|++.||++.- .. +++..+.+ ...+.||++++.
T Consensus 45 ~a~~~l~~~Gid~~~--~~--~~l~~~~~----~~~DlIv~m~~~ 81 (140)
T smart00226 45 RAVEVLKEHGIALSH--HA--SQLTSSDF----KNADLVLAMDHS 81 (140)
T ss_pred HHHHHHHHcCcCccc--ee--ccCCHHHH----HhCCEEEEeCHH
Confidence 466677888998652 22 25665443 467899999875
No 419
>cd06070 H2MP_like-2 Putative [NiFe] hydrogenase-specific C-terminal protease. Sequence comparison shows similarity to hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved in processing of HypE (the large subunit of hydrogenases 3). This cleavage is nickel dependent.
Probab=20.12 E-value=2.8e+02 Score=26.05 Aligned_cols=51 Identities=16% Similarity=0.178 Sum_probs=33.5
Q ss_pred EEEechhh----HHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcCCCeEEEEcCC
Q 004946 593 LLGYGAMV----QNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEG 649 (722)
Q Consensus 593 lva~Gs~v----~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~~~vvvvEe~ 649 (722)
|+++|+.+ .....+++.|++. +++++|..+. ..+.+ ..+.+++.+|+|+-.
T Consensus 2 VlGiGN~l~~DDg~G~~v~~~L~~~--~v~vi~~g~~---~~~ll-~~i~~~d~viiVDA~ 56 (140)
T cd06070 2 IIGVGNRLYGDDGFGSCLAEALEQC--GAPVFDGGLD---GFGLL-SHLENYDIVIFIDVA 56 (140)
T ss_pred EEEECchhcccCcHHHHHHHHHhhC--CCEEEECCCc---HHHHH-HHHcCCCEEEEEEee
Confidence 67888876 3566778888763 5778888763 23333 334567788888763
Done!