Query 004946
Match_columns 722
No_of_seqs 400 out of 2974
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 10:39:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004946.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004946hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2o1x_A 1-deoxy-D-xylulose-5-ph 100.0 5E-115 2E-119 1014.5 52.9 614 76-712 7-623 (629)
2 2o1s_A 1-deoxy-D-xylulose-5-ph 100.0 5E-114 2E-118 1005.2 52.4 612 75-712 4-620 (621)
3 3mos_A Transketolase, TK; thia 100.0 9E-101 3E-105 888.8 50.9 548 89-708 3-615 (616)
4 3l84_A Transketolase; TKT, str 100.0 1.4E-98 5E-103 868.5 47.5 532 94-709 1-631 (632)
5 3rim_A Transketolase, TK; TPP, 100.0 7.2E-97 2E-101 859.9 46.2 541 96-712 19-699 (700)
6 3m49_A Transketolase; alpha-be 100.0 6.4E-97 2E-101 861.2 43.1 548 91-711 21-690 (690)
7 3kom_A Transketolase; rossmann 100.0 4.9E-96 2E-100 852.4 41.4 541 96-710 3-662 (663)
8 1itz_A Transketolase; calvin c 100.0 3.5E-95 1.2E-99 850.8 48.6 546 88-709 5-674 (675)
9 3uk1_A Transketolase; structur 100.0 2.7E-95 9E-100 848.9 43.0 536 99-711 45-710 (711)
10 2e6k_A Transketolase; structur 100.0 3.5E-93 1.2E-97 831.4 40.6 532 100-711 9-651 (651)
11 2r8o_A Transketolase 1, TK 1; 100.0 5E-93 1.7E-97 832.5 41.7 539 99-712 4-664 (669)
12 1gpu_A Transketolase; transfer 100.0 4.9E-92 1.7E-96 824.8 46.7 535 98-714 6-667 (680)
13 1r9j_A Transketolase; domains, 100.0 1.1E-90 3.6E-95 812.0 44.8 535 98-713 5-657 (673)
14 2qtc_A Pyruvate dehydrogenase 100.0 5.9E-90 2E-94 818.3 49.5 603 78-713 56-858 (886)
15 3ahc_A Phosphoketolase, xylulo 100.0 5.4E-65 1.8E-69 593.4 40.0 527 117-712 81-786 (845)
16 2jgd_A 2-oxoglutarate dehydrog 100.0 2E-60 6.7E-65 567.1 44.1 550 92-708 193-930 (933)
17 1ik6_A Pyruvate dehydrogenase; 100.0 1.9E-61 6.5E-66 527.6 24.3 335 365-712 10-368 (369)
18 2yic_A 2-oxoglutarate decarbox 100.0 9E-57 3.1E-61 533.0 32.6 537 92-690 113-853 (868)
19 2ozl_B PDHE1-B, pyruvate dehyd 100.0 1.4E-56 4.9E-61 484.8 27.6 307 399-712 13-340 (341)
20 1w85_B Pyruvate dehydrogenase 100.0 1.9E-56 6.5E-61 481.6 28.4 305 400-712 2-323 (324)
21 2xt6_A 2-oxoglutarate decarbox 100.0 4.5E-56 1.5E-60 539.0 31.8 537 92-690 358-1098(1113)
22 1umd_B E1-beta, 2-OXO acid deh 100.0 1E-55 3.6E-60 475.9 27.5 304 400-712 3-323 (324)
23 2bfd_B 2-oxoisovalerate dehydr 100.0 2.3E-55 7.8E-60 476.0 23.4 305 399-712 19-341 (342)
24 1qs0_B 2-oxoisovalerate dehydr 100.0 4.7E-54 1.6E-58 465.6 25.6 301 400-712 4-337 (338)
25 1umd_A E1-alpha, 2-OXO acid de 100.0 3.7E-28 1.3E-32 265.1 26.4 230 91-376 30-277 (367)
26 1w85_A Pyruvate dehydrogenase 99.9 8.4E-25 2.9E-29 238.1 24.7 226 89-373 36-272 (368)
27 2ozl_A PDHE1-A type I, pyruvat 99.9 9.7E-25 3.3E-29 237.0 23.7 230 87-375 24-270 (365)
28 1yd7_A 2-keto acid:ferredoxin 99.9 3.2E-25 1.1E-29 244.2 10.7 284 402-711 24-394 (395)
29 2bfd_A 2-oxoisovalerate dehydr 99.9 8.3E-23 2.8E-27 224.8 25.1 229 89-374 47-293 (400)
30 1qs0_A 2-oxoisovalerate dehydr 99.9 2E-22 6.7E-27 221.8 23.0 229 92-377 69-316 (407)
31 2c42_A Pyruvate-ferredoxin oxi 99.8 8.2E-17 2.8E-21 198.3 31.5 251 444-712 55-383 (1231)
32 4feg_A Pyruvate oxidase; carba 99.6 1.9E-15 6.6E-20 175.4 15.0 180 125-375 371-553 (603)
33 2uz1_A Benzaldehyde lyase; thi 99.6 5.2E-14 1.8E-18 162.1 19.7 178 124-369 369-547 (563)
34 3ju3_A Probable 2-oxoacid ferr 99.5 1.7E-14 5.8E-19 131.8 11.1 107 586-712 11-117 (118)
35 1ozh_A ALS, acetolactate synth 99.5 9.9E-14 3.4E-18 159.8 17.6 175 125-371 371-546 (566)
36 3eya_A Pyruvate dehydrogenase 99.5 2.4E-14 8.3E-19 164.3 10.9 177 124-372 356-533 (549)
37 1ybh_A Acetolactate synthase, 99.5 7.8E-14 2.7E-18 161.5 12.5 187 125-374 377-564 (590)
38 2pgn_A Cyclohexane-1,2-dione h 99.4 2.5E-13 8.5E-18 157.2 12.8 179 125-375 375-554 (589)
39 1t9b_A Acetolactate synthase, 99.4 3.8E-13 1.3E-17 157.8 14.3 182 124-375 460-644 (677)
40 1v5e_A Pyruvate oxidase; oxido 99.4 5.8E-13 2E-17 154.2 13.9 176 125-370 364-541 (590)
41 1q6z_A BFD, BFDC, benzoylforma 99.4 6.1E-13 2.1E-17 151.9 13.7 173 125-369 353-526 (528)
42 2iht_A Carboxyethylarginine sy 99.4 5.2E-13 1.8E-17 154.0 13.0 128 190-368 434-561 (573)
43 2vk8_A Pyruvate decarboxylase 99.4 4.1E-13 1.4E-17 154.5 10.9 176 125-370 365-544 (563)
44 2pan_A Glyoxylate carboligase; 99.4 7.7E-13 2.6E-17 153.9 12.5 187 125-372 393-584 (616)
45 1ovm_A Indole-3-pyruvate decar 99.4 5.7E-13 2E-17 153.0 11.0 171 125-370 360-534 (552)
46 2vbi_A Pyruvate decarboxylase; 99.4 2E-12 6.8E-17 149.0 12.6 171 125-371 361-536 (566)
47 2vbf_A Branched-chain alpha-ke 99.3 1.9E-12 6.4E-17 149.3 11.6 171 125-370 377-553 (570)
48 2wvg_A PDC, pyruvate decarboxy 99.3 2.2E-12 7.4E-17 148.7 11.3 171 125-371 365-544 (568)
49 2q28_A Oxalyl-COA decarboxylas 99.3 1.5E-11 5E-16 141.6 17.9 176 125-371 370-547 (564)
50 2x7j_A 2-succinyl-5-enolpyruvy 99.3 6.7E-12 2.3E-16 145.6 13.9 130 190-370 453-582 (604)
51 2c31_A Oxalyl-COA decarboxylas 99.3 1.8E-11 6E-16 141.1 15.7 126 190-371 424-550 (568)
52 2nxw_A Phenyl-3-pyruvate decar 99.3 9.8E-12 3.3E-16 143.1 11.5 124 190-370 420-544 (565)
53 3lq1_A 2-succinyl-5-enolpyruvy 99.2 1.8E-11 6.1E-16 141.3 11.9 131 194-376 438-568 (578)
54 3hww_A 2-succinyl-5-enolpyruvy 99.2 2E-11 6.7E-16 140.4 8.7 125 191-369 416-540 (556)
55 2c42_A Pyruvate-ferredoxin oxi 98.7 6.4E-08 2.2E-12 119.6 11.9 114 214-367 953-1069(1231)
56 1v5e_A Pyruvate oxidase; oxido 93.8 0.12 4.1E-06 59.3 8.6 113 444-562 45-165 (590)
57 2uz1_A Benzaldehyde lyase; thi 93.2 0.54 1.8E-05 53.4 12.9 149 401-561 4-164 (563)
58 1ybh_A Acetolactate synthase, 93.2 0.43 1.5E-05 54.6 11.9 114 444-562 52-173 (590)
59 2iht_A Carboxyethylarginine sy 92.6 0.34 1.2E-05 55.2 10.1 116 443-562 49-172 (573)
60 2pan_A Glyoxylate carboligase; 92.6 0.94 3.2E-05 52.0 13.8 121 435-561 58-188 (616)
61 2wvg_A PDC, pyruvate decarboxy 92.4 1.5 5.1E-05 49.7 15.0 115 444-562 43-170 (568)
62 3eya_A Pyruvate dehydrogenase 92.0 1.3 4.6E-05 49.9 14.0 113 444-561 43-162 (549)
63 1ozh_A ALS, acetolactate synth 91.7 0.61 2.1E-05 53.0 10.7 113 444-561 50-170 (566)
64 2vbi_A Pyruvate decarboxylase; 91.7 1.9 6.6E-05 48.8 14.8 115 444-562 43-170 (566)
65 4feg_A Pyruvate oxidase; carba 91.2 0.97 3.3E-05 51.8 11.7 151 401-562 11-172 (603)
66 1t9b_A Acetolactate synthase, 90.9 1 3.5E-05 52.5 11.6 113 444-561 122-242 (677)
67 2pgn_A Cyclohexane-1,2-dione h 90.4 0.82 2.8E-05 52.2 10.2 114 444-562 45-166 (589)
68 2vbf_A Branched-chain alpha-ke 90.1 1.3 4.5E-05 50.3 11.5 149 401-561 25-190 (570)
69 2nxw_A Phenyl-3-pyruvate decar 89.8 1.9 6.5E-05 48.9 12.4 154 400-562 20-187 (565)
70 1q6z_A BFD, BFDC, benzoylforma 88.8 0.63 2.1E-05 52.4 7.4 115 444-562 40-162 (528)
71 3hww_A 2-succinyl-5-enolpyruvy 88.4 2.4 8.1E-05 48.0 11.9 147 407-561 10-171 (556)
72 2c31_A Oxalyl-COA decarboxylas 87.3 4.2 0.00014 46.0 13.1 115 443-561 48-171 (568)
73 2vk8_A Pyruvate decarboxylase 86.9 8.9 0.0003 43.2 15.5 114 444-562 44-171 (563)
74 3lq1_A 2-succinyl-5-enolpyruvy 86.8 2.9 9.9E-05 47.5 11.4 147 407-561 13-178 (578)
75 2x7j_A 2-succinyl-5-enolpyruvy 85.6 2.9 9.9E-05 47.8 10.6 115 444-562 71-199 (604)
76 2q28_A Oxalyl-COA decarboxylas 83.4 9.8 0.00034 42.9 13.7 115 443-561 46-169 (564)
77 1ovm_A Indole-3-pyruvate decar 82.3 11 0.00037 42.4 13.4 118 441-562 41-171 (552)
78 1w85_A Pyruvate dehydrogenase 82.0 2.1 7.1E-05 46.0 6.9 102 455-558 147-263 (368)
79 2bfd_A 2-oxoisovalerate dehydr 80.8 2.5 8.4E-05 45.9 7.1 102 456-558 168-283 (400)
80 1r9j_A Transketolase; domains, 76.5 6.2 0.00021 45.8 9.1 88 469-559 150-247 (673)
81 1gpu_A Transketolase; transfer 76.4 4.7 0.00016 46.8 8.1 87 469-558 150-246 (680)
82 1qs0_A 2-oxoisovalerate dehydr 75.7 3.3 0.00011 45.0 6.1 101 456-558 187-303 (407)
83 1umd_A E1-alpha, 2-OXO acid de 75.7 5.6 0.00019 42.5 7.9 109 447-558 142-265 (367)
84 2r8o_A Transketolase 1, TK 1; 75.6 5.8 0.0002 46.0 8.6 87 469-558 148-243 (669)
85 3ipz_A Monothiol glutaredoxin- 75.3 7.2 0.00024 33.7 7.2 69 588-657 17-90 (109)
86 3m49_A Transketolase; alpha-be 74.4 8.1 0.00028 44.9 9.3 88 469-559 174-270 (690)
87 2wci_A Glutaredoxin-4; redox-a 71.1 8.2 0.00028 35.1 6.7 67 589-656 35-106 (135)
88 3kom_A Transketolase; rossmann 70.5 14 0.00049 42.6 10.2 89 468-559 149-246 (663)
89 1qs0_B 2-oxoisovalerate dehydr 70.5 21 0.00073 37.3 10.9 38 325-367 138-176 (338)
90 2ozl_A PDHE1-A type I, pyruvat 69.5 4.5 0.00015 43.3 5.3 102 455-558 145-259 (365)
91 3zyw_A Glutaredoxin-3; metal b 68.5 11 0.00038 32.7 6.8 76 588-666 15-95 (111)
92 2e6k_A Transketolase; structur 68.1 11 0.00039 43.4 8.6 87 468-558 151-246 (651)
93 2lqo_A Putative glutaredoxin R 66.9 12 0.00043 31.4 6.5 72 589-665 4-82 (92)
94 1wik_A Thioredoxin-like protei 66.4 8.9 0.0003 33.0 5.7 68 588-656 14-86 (109)
95 3rim_A Transketolase, TK; TPP, 65.9 18 0.00061 42.1 9.7 88 469-559 170-266 (700)
96 3uk1_A Transketolase; structur 65.8 21 0.00073 41.5 10.4 88 468-559 188-284 (711)
97 3l84_A Transketolase; TKT, str 65.3 19 0.00066 41.3 9.8 99 455-558 119-238 (632)
98 1itz_A Transketolase; calvin c 63.7 15 0.00052 42.5 8.6 88 469-559 161-258 (675)
99 2o1s_A 1-deoxy-D-xylulose-5-ph 62.2 37 0.0013 38.7 11.5 103 196-364 372-476 (621)
100 1aba_A Glutaredoxin; electron 61.1 22 0.00074 28.9 6.9 65 591-656 2-81 (87)
101 2o1x_A 1-deoxy-D-xylulose-5-ph 60.7 23 0.0008 40.5 9.4 100 455-558 128-285 (629)
102 2bfd_B 2-oxoisovalerate dehydr 60.4 25 0.00085 37.0 8.9 32 329-365 159-190 (342)
103 1t1v_A SH3BGRL3, SH3 domain-bi 57.3 12 0.0004 31.1 4.6 66 590-657 3-77 (93)
104 2wem_A Glutaredoxin-related pr 57.1 27 0.00091 30.8 7.1 69 588-657 19-93 (118)
105 3gx8_A Monothiol glutaredoxin- 55.5 24 0.00082 31.1 6.6 66 588-657 15-91 (121)
106 1w85_B Pyruvate dehydrogenase 54.6 52 0.0018 34.1 10.1 51 195-254 60-120 (324)
107 3mos_A Transketolase, TK; thia 54.0 37 0.0013 38.8 9.5 97 455-558 126-238 (616)
108 1ik6_A Pyruvate dehydrogenase; 52.6 49 0.0017 35.2 9.6 51 195-253 108-168 (369)
109 2ozl_B PDHE1-B, pyruvate dehyd 50.9 86 0.0029 32.8 11.2 51 195-254 72-132 (341)
110 1jl3_A Arsenate reductase; alp 48.7 14 0.00048 33.5 4.0 107 590-714 31-138 (139)
111 1umd_B E1-beta, 2-OXO acid deh 47.2 1.1E+02 0.0037 31.6 11.2 47 196-250 62-118 (324)
112 2yan_A Glutaredoxin-3; oxidore 44.5 38 0.0013 28.5 5.9 68 589-657 17-89 (105)
113 2vzf_A NADH-dependent FMN redu 44.0 39 0.0013 32.0 6.6 65 599-663 18-93 (197)
114 2q62_A ARSH; alpha/beta, flavo 42.3 45 0.0016 33.3 7.0 64 601-664 52-123 (247)
115 3rpe_A MDAB, modulator of drug 41.9 75 0.0025 31.1 8.3 59 601-661 47-105 (218)
116 2ct6_A SH3 domain-binding glut 39.7 29 0.001 29.9 4.5 62 590-656 9-88 (111)
117 1fov_A Glutaredoxin 3, GRX3; a 39.3 87 0.003 24.2 7.1 71 590-663 2-73 (82)
118 2qtc_A Pyruvate dehydrogenase 39.1 1.2E+02 0.004 36.3 10.8 65 466-533 221-292 (886)
119 2wul_A Glutaredoxin related pr 38.7 92 0.0032 27.4 7.6 68 588-656 19-92 (118)
120 3rhb_A ATGRXC5, glutaredoxin-C 38.6 64 0.0022 27.3 6.6 68 589-657 19-90 (113)
121 3qmx_A Glutaredoxin A, glutare 38.0 53 0.0018 27.5 5.8 67 589-657 16-84 (99)
122 1sqs_A Conserved hypothetical 36.7 57 0.002 32.0 6.7 66 599-664 17-104 (242)
123 3gx1_A LIN1832 protein; APC633 36.5 2.3E+02 0.0078 25.1 11.9 112 590-714 6-126 (130)
124 1u6t_A SH3 domain-binding glut 36.2 33 0.0011 30.5 4.2 54 603-657 19-81 (121)
125 3kkj_A Amine oxidase, flavin-c 35.9 26 0.00088 33.1 3.9 32 589-623 3-34 (336)
126 2a5l_A Trp repressor binding p 34.7 61 0.0021 30.3 6.3 67 597-664 17-96 (200)
127 3ic4_A Glutaredoxin (GRX-1); s 34.3 67 0.0023 25.8 5.8 65 590-655 13-82 (92)
128 3fni_A Putative diflavin flavo 34.2 1.8E+02 0.0063 26.3 9.4 52 593-646 8-63 (159)
129 1v95_A Nuclear receptor coacti 33.9 1.4E+02 0.0047 26.9 7.9 59 590-648 10-69 (130)
130 3hly_A Flavodoxin-like domain; 33.2 2.7E+02 0.0094 25.1 11.0 53 593-648 4-60 (161)
131 2khp_A Glutaredoxin; thioredox 32.3 1.1E+02 0.0037 24.5 6.7 65 590-656 7-72 (92)
132 1t0i_A YLR011WP; FMN binding p 31.3 77 0.0026 29.5 6.4 66 599-664 16-109 (191)
133 3l4e_A Uncharacterized peptida 31.1 1.1E+02 0.0038 29.4 7.6 55 588-645 27-85 (206)
134 2ab1_A Hypothetical protein; H 30.8 22 0.00076 31.6 2.2 56 585-644 58-115 (122)
135 3fwz_A Inner membrane protein 30.3 1E+02 0.0036 27.1 6.8 32 589-623 8-39 (140)
136 2amj_A Modulator of drug activ 29.7 81 0.0028 30.2 6.3 60 602-663 35-94 (204)
137 2fzv_A Putative arsenical resi 29.7 67 0.0023 32.8 5.9 63 601-663 76-147 (279)
138 3h8q_A Thioredoxin reductase 3 29.7 1.6E+02 0.0054 25.0 7.6 67 588-657 16-87 (114)
139 3f2v_A General stress protein 29.4 98 0.0033 29.5 6.7 63 602-664 18-83 (192)
140 1id1_A Putative potassium chan 28.7 1.3E+02 0.0046 26.7 7.3 32 589-623 4-35 (153)
141 3cpk_A Uncharacterized protein 28.3 43 0.0015 31.0 3.7 53 588-644 88-141 (150)
142 2jgd_A 2-oxoglutarate dehydrog 27.9 68 0.0023 38.5 6.3 109 446-558 318-452 (933)
143 5nul_A Flavodoxin; electron tr 27.8 83 0.0028 27.5 5.6 50 597-653 10-59 (138)
144 3u7r_A NADPH-dependent FMN red 27.6 1.3E+02 0.0043 28.7 7.2 59 600-658 18-86 (190)
145 2fz5_A Flavodoxin; alpha/beta 27.6 1.2E+02 0.0041 26.2 6.6 65 593-664 3-73 (137)
146 3l78_A Regulatory protein SPX; 27.5 93 0.0032 27.1 5.7 41 597-638 7-47 (120)
147 3fz4_A Putative arsenate reduc 27.4 81 0.0028 27.6 5.3 43 597-640 10-52 (120)
148 1yd7_A 2-keto acid:ferredoxin 27.1 84 0.0029 33.6 6.4 51 195-253 74-124 (395)
149 2fi9_A Outer membrane protein; 26.9 26 0.00088 31.5 1.9 53 588-644 68-121 (128)
150 2fvt_A Conserved hypothetical 26.7 26 0.00089 31.8 1.9 36 588-623 67-103 (135)
151 3llv_A Exopolyphosphatase-rela 26.5 1.3E+02 0.0045 26.2 6.7 33 588-623 6-38 (141)
152 1kte_A Thioltransferase; redox 25.9 1.6E+02 0.0056 24.0 6.9 65 590-655 13-83 (105)
153 4dik_A Flavoprotein; TM0755, e 25.9 1.5E+02 0.0052 31.7 8.2 71 592-662 268-342 (410)
154 2gm2_A Conserved hypothetical 25.8 24 0.00083 31.9 1.5 37 587-623 63-100 (132)
155 3f6r_A Flavodoxin; FMN binding 24.5 2.9E+02 0.0099 24.1 8.8 61 597-664 13-77 (148)
156 3rdw_A Putative arsenate reduc 24.1 80 0.0027 27.7 4.6 49 591-641 7-55 (121)
157 2hze_A Glutaredoxin-1; thiored 23.5 1.9E+02 0.0064 24.4 6.9 66 589-656 19-91 (114)
158 3gkx_A Putative ARSC family re 23.5 1E+02 0.0034 27.0 5.1 47 591-639 6-52 (120)
159 3lyu_A Putative hydrogenase; t 23.3 70 0.0024 28.7 4.2 37 588-624 18-54 (142)
160 1rtt_A Conserved hypothetical 23.1 62 0.0021 30.3 4.0 58 606-664 29-97 (193)
161 2e85_A Hydrogenase 3 maturatio 23.1 2.5E+02 0.0086 25.7 8.1 57 590-648 5-66 (159)
162 1z3e_A Regulatory protein SPX; 22.9 1.6E+02 0.0054 26.0 6.5 47 591-639 3-49 (132)
163 2yic_A 2-oxoglutarate decarbox 22.4 1.3E+02 0.0043 35.9 7.2 72 485-558 298-380 (868)
164 1rw1_A Conserved hypothetical 22.0 98 0.0033 26.6 4.7 48 591-640 2-49 (114)
165 3hr4_A Nitric oxide synthase, 21.7 1.1E+02 0.0039 29.8 5.7 84 590-681 41-132 (219)
166 3nzn_A Glutaredoxin; structura 21.5 1.2E+02 0.0042 25.1 5.2 66 589-655 22-93 (103)
167 3lp6_A Phosphoribosylaminoimid 21.0 2.3E+02 0.008 26.7 7.3 35 589-623 8-45 (174)
168 1cfz_A Hydrogenase 2 maturatio 20.5 1.1E+02 0.0038 28.3 5.0 56 590-649 2-64 (162)
169 3fvw_A Putative NAD(P)H-depend 20.3 2E+02 0.0069 26.9 7.0 62 601-663 20-91 (192)
No 1
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=100.00 E-value=4.5e-115 Score=1014.46 Aligned_cols=614 Identities=35% Similarity=0.554 Sum_probs=529.6
Q ss_pred CCCCccccCCCCchhccCCCHHHHHHHHHHHHHHHHHhHhcCCCCCCCcchHHHHHHHHhhccCCCCcEEEecCCchHHH
Q 004946 76 KEPTPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYA 155 (722)
Q Consensus 76 ~~~~~~l~~i~~p~~~~~l~~~~l~~la~eiR~~ii~~~~~~gGh~~~slg~vel~~aL~~vf~~p~D~iv~d~GH~~y~ 155 (722)
...+|+|++|++|.|+|+++.++|+++++++|+.+++++++++||+++++|+++++.+||++|+.|+|+||||+|||+|+
T Consensus 7 ~~~~~~l~~i~~p~d~~~l~~~~l~~l~~~iR~~~~~~~~~~~Gh~~~~lg~v~l~~aL~~~~~~~~D~~v~~~GH~~y~ 86 (629)
T 2o1x_A 7 TSDTPLLDQIHGPKDLKRLSREQLPALTEELRGEIVRVCSRGGLHLASSLGAVDIITALHYVLDSPRDRILFDVGHQAYA 86 (629)
T ss_dssp CCSCTTGGGCSSHHHHTTSCGGGHHHHHHHHHHHHHHHHTTSSSCHHHHHHTHHHHHHHHHHSCTTTSEEEESSSTTCHH
T ss_pred CCCCchhhhCCChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCcCCCchhHHHHHHHHHhhcCCCCCeEEecCchHHHH
Confidence 35579999999999999999999999999999999999999999999999999999999999998999999999999999
Q ss_pred HHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHH
Q 004946 156 HKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAM 235 (722)
Q Consensus 156 h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAl 235 (722)
|++++|+.+.+.++|++++++|||++.+++|+.+++||+|+++|+|+|+|+|+++++++++|||++|||++++|++||||
T Consensus 87 ~~~l~G~~~~~~~~r~~~g~~G~p~~~~s~~~~~~~G~~G~gl~~AvG~AlA~k~~~~~~~Vv~v~GDG~~~~G~~~EaL 166 (629)
T 2o1x_A 87 HKILTGRRDQMADIKKEGGISGFTKVSESEHDAITVGHASTSLTNALGMALARDAQGKDFHVAAVIGDGSLTGGMALAAL 166 (629)
T ss_dssp HHHTTTTGGGGGGTTSTTSCCSSCCGGGCTTCCSCCSSSSCHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHH
T ss_pred HHHHhCcHhHHhCcccCCCCCCCCCCCCCCCCCcCCCcccccHhHHHHHHHHHHHhCCCCeEEEEEchhhhhccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhc
Q 004946 236 SNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARG 315 (722)
Q Consensus 236 n~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~ 315 (722)
|+|+++++|++||+|||+++ ++++++.++.++++++..+.|..++.+.+.+.+.+|.++.....++.++++.
T Consensus 167 ~~A~~~~~pli~IvnnN~~~--------i~~~~~~~~~~~~~l~~~~~y~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~ 238 (629)
T 2o1x_A 167 NTIGDMGRKMLIVLNDNEMS--------ISENVGAMNKFMRGLQVQKWFQEGEGAGKKAVEAVSKPLADFMSRAKNSTRH 238 (629)
T ss_dssp HHHHHHCCSEEEEEEECSBS--------SSBCCSSHHHHC----------------------------------------
T ss_pred HHHHhhCCCEEEEEECCCCC--------CCCChhHHHHHHHHHhhchhHHHHHHHHHHHHhccchHHHHHHHHHHHHHHh
Confidence 99999999999999999983 4566777777788888888888888887776665555544444454555555
Q ss_pred ccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEEEEEeeccCCCcccccccchhhccCCCC--CCCC
Q 004946 316 MIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGAS--DSNS 393 (722)
Q Consensus 316 ~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kG~G~~~ae~~~~~~~~H~~~~--~~tg 393 (722)
++.|.+..+|++|||++++++||||+++|.++++++++ .++|++||++|.||+||+++|+ ++.+||+.++ +.++
T Consensus 239 ~~~p~~~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~~--~~~P~lI~v~t~kg~G~~~~e~--~~~~~H~~~~f~~~~~ 314 (629)
T 2o1x_A 239 FFDPASVNPFAAMGVRYVGPVDGHNVQELVWLLERLVD--LDGPTILHIVTTKGKGLSYAEA--DPIYWHGPAKFDPATG 314 (629)
T ss_dssp -----CCCTTGGGTCEEEEEEESSCHHHHHHHHHHHTT--SSSEEEEEEECCTTTTCHHHHH--CTTGGGSCCSBCTTTC
T ss_pred hcCcccchHHHhcCCeEEeeECCcCHHHHHHHHHHHHh--cCCCEEEEEEEecCCCCChhHc--CCcccccCccCCcCcC
Confidence 44442227999999999989999999999999999987 4899999999999999999987 6789999987 4555
Q ss_pred CCCCCCccchHHHHHHHHHHHHhcCCCEEEEecCCCCccchHHHHHhCCCceeecccchHHHHHHHHHHhcCCCeeEEEe
Q 004946 394 LPFGNYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPFCII 473 (722)
Q Consensus 394 ~~~~~~~~s~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f~~~~p~R~~d~GIaE~~av~~AaGlA~~G~~p~~~t 473 (722)
...+....+|+++|+++|.+++++|++|+++++||++++++..|+++||+||||+||+|++|+++|+|+|++|+|||++|
T Consensus 315 ~~~~~~~~~~~~~~~~~l~~~~~~d~~v~~i~~d~~~~~~~~~f~~~~~~r~~~~gIaE~~~~~~a~G~A~~G~rp~~~~ 394 (629)
T 2o1x_A 315 EYVPSSAYSWSAAFGEAVTEWAKTDPRTFVVTPAMREGSGLVEFSRVHPHRYLDVGIAEEVAVTTAAGMALQGMRPVVAI 394 (629)
T ss_dssp CBCCCCCCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTTTCHHHHHHCGGGEEECCSCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cccccchHHHHHHHHHHHHHHhhhCcCEEEEeccccCCcChHHHHHhcCcceEeccccHHHHHHHHHHHHHcCCEEEEEe
Confidence 42222257999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCccCCCCCCcCcHHHHHHhcCCCCcEEEeeCCHHHHHHHHHHHhhhCCCC
Q 004946 474 PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRP 553 (722)
Q Consensus 474 ~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~~~~P 553 (722)
|++|++|++||+++++|++++||+++++++|++|+||+|||+.+|++++|++|||+|++|+|++|+++++++|++ .++|
T Consensus 395 ~~~F~~~a~dqi~~~~a~~~~pvv~~~~~~g~~g~dG~tH~~~~d~a~~r~iP~l~v~~P~d~~e~~~~~~~a~~-~~~P 473 (629)
T 2o1x_A 395 YSTFLQRAYDQVLHDVAIEHLNVTFCIDRAGIVGADGATHNGVFDLSFLRSIPGVRIGLPKDAAELRGMLKYAQT-HDGP 473 (629)
T ss_dssp EHHHHGGGHHHHHHTTTTTTCCCEEEEESBBCCCTTCTTTCBCSHHHHTTTSTTCEEECCSSHHHHHHHHHHHHH-SSSC
T ss_pred cHHHHHHHHHHHHHHHhhcCCCEEEEEECCccCCCCCcccCccHHHHHHHccCCcEEEecCCHHHHHHHHHHHHh-CCCC
Confidence 999999999999999999999999999999998999999999999999999999999999999999999999997 4899
Q ss_pred EEEEecCCCcccccCCCCCCCCccccccEEEEEeCCcEEEEEechhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHH
Q 004946 554 VCFRYPRGAIVRTDLPGYRGIPIEEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLV 633 (722)
Q Consensus 554 v~ir~~r~~~~~~~~p~~~~~~~~~igk~~vl~eG~dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i 633 (722)
++||++|+..+..+. ...+.+ ++||++++++|+|++||++|++++.|++|++.|+ +++|||++|++|||++++
T Consensus 474 v~i~~~r~~~~~~~~--~~~~~~-~~G~~~~~~~g~dv~iva~G~~v~~a~~Aa~~L~----~~~Vi~~~~~~Pld~~~i 546 (629)
T 2o1x_A 474 FAIRYPRGNTAQVPA--GTWPDL-KWGEWERLKGGDDVVILAGGKALDYALKAAEDLP----GVGVVNARFVKPLDEEML 546 (629)
T ss_dssp EEEECCSSBCCCCCT--TCCCCC-CTTCCEEEECCSSEEEEECHHHHHHHHHHHTTCT----TEEEEECCEEESCCHHHH
T ss_pred EEEEecCCCCCCCcc--cccccc-cCCceEEEeeCCCEEEEEecHHHHHHHHHHHHhc----CCEEEeeCCCCCCcHHHH
Confidence 999999987543221 123456 7899999999999999999999999999999986 899999999999999999
Q ss_pred HHHhcCCCeEEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHhh
Q 004946 634 RELCQNHTFLITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLG 712 (722)
Q Consensus 634 ~~~~~~~~~vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~v~~ig~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~ll~ 712 (722)
.+++++++++|||||+. .||||++|++++.++++ +.+++++|++|.|+++|+.+++++++|+|+++|++++++++.
T Consensus 547 ~~~~~~~~~vv~vEe~~~~gG~g~~v~~~l~~~~~---~~~v~~ig~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~~~~ 623 (629)
T 2o1x_A 547 REVGGRARALITVEDNTVVGGFGGAVLEALNSMNL---HPTVRVLGIPDEFQEHATAESVHARAGIDAPAIRTVLAELGV 623 (629)
T ss_dssp HHHHHHCSEEEEEEEEESSSSHHHHHHHHHHHTTC---CCEEEEEEECSSCCCSCCHHHHHHHHTCSHHHHHHHHHHTTC
T ss_pred HHHHhhCCcEEEEecCCCCCCHHHHHHHHHHHhCC---CCCeEEEeeCCcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 99999999999999997 69999999999999874 578999999999999999999999999999999999998753
No 2
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=100.00 E-value=4.6e-114 Score=1005.17 Aligned_cols=612 Identities=40% Similarity=0.646 Sum_probs=506.8
Q ss_pred CCCCCccccCCCCchhccCCCHHHHHHHHHHHHHHHHHhHhcCCCCCCCcchHHHHHHHHhhccCCCCcEEEecCCchHH
Q 004946 75 DKEPTPILDLVENPLRLKSLTIKELKQLAVEIRSELSSIVSKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTY 154 (722)
Q Consensus 75 ~~~~~~~l~~i~~p~~~~~l~~~~l~~la~eiR~~ii~~~~~~gGh~~~slg~vel~~aL~~vf~~p~D~iv~d~GH~~y 154 (722)
+.|.+++|++|++|.|+|+|+.++|+++++++|+.+++++++++||+++++|+++++++||++|+.|+|+||||+|||+|
T Consensus 4 ~~~~~~~l~~i~~p~d~~~l~~~~l~~l~~~iR~~~~~~~~~~~Gh~~~~lg~~~~~~~l~~~~~~~~D~~v~~~gH~~y 83 (621)
T 2o1s_A 4 DIAKYPTLALVDSTQELRLLPKESLPKLCDELRRYLLDSVSRSSGHFASGLGTVELTVALHYVYNTPFDQLIWDVGHQAY 83 (621)
T ss_dssp CTTTSTTGGGCSSHHHHTTSCGGGHHHHHHHHHHHHHHHSCGGGCTHHHHHTTHHHHHHHHHHSCTTTSEEEESSSTTCH
T ss_pred CCCCCchhhhcCChHHhhhCCHHHHHHHHHHHHHHHHHHHhhcCCCcCCChhHHHHHHHHHhccCCCCCEEEEeCchHHH
Confidence 34778999999999999999999999999999999999999999999999999999999999999899999999999999
Q ss_pred HHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHH
Q 004946 155 AHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEA 234 (722)
Q Consensus 155 ~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EA 234 (722)
+|++++|+.+.+.++|+++|++|||++.+++++.|++||+|+++|+|+|+|+|+++++++++|||++|||++++|++|||
T Consensus 84 ~~~~l~G~~~~~~~~r~~~g~~g~~~~~~s~~~~~~~G~~G~gl~~A~G~AlA~~~~~~~~~Vv~v~GDG~~~~G~~~Ea 163 (621)
T 2o1s_A 84 PHKILTGRRDKIGTIRQKGGLHPFPWRGESEYDVLSVGHSSTSISAGIGIAVAAEKEGKNRRTVCVIGDGAITAGMAFEA 163 (621)
T ss_dssp HHHHTTTTGGGGGGTTSTTSCCSSCCTTTCTTCCSCCSSSSCHHHHHHHHHHHHHHHTSCCCEEEEEETTGGGSHHHHHH
T ss_pred HHHHHhCCHhhhhcccccCCCCCCCCCCCCCCCccCCcccchHHHHHHHHHHHHHHhCCCCeEEEEEchhhhhccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhh
Q 004946 235 MSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYAR 314 (722)
Q Consensus 235 ln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~ 314 (722)
||+|+++++|+++|||||+++ ++++++.++.++++++.++.|..++.+.+.+.+..+ .+....++..++++
T Consensus 164 L~~A~~~~~pli~vvnnN~~~--------i~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~p-~~~~~~~r~~~~~~ 234 (621)
T 2o1s_A 164 MNHAGDIRPDMLVILNDNEMS--------ISENVGALNNHLAQLLSGKLYSSLREGGKKVFSGVP-PIKELLKRTEEHIK 234 (621)
T ss_dssp HHHHHHHCCSEEEEEEECC-------------------------------------------------------------
T ss_pred HHHHHhhCCCEEEEEeCCCcc--------cCCCcchHHHHHHhhhcchhHHHHHHHHHHHHhccc-hHHHHHHHHHHHhh
Confidence 999999999999999999983 455667666777778888888777766654443211 00233445555555
Q ss_pred cccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEEEEEeeccCCCcccccccchhhccCCCC--CCC
Q 004946 315 GMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGAS--DSN 392 (722)
Q Consensus 315 ~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kG~G~~~ae~~~~~~~~H~~~~--~~t 392 (722)
++..+ ..+|++|||+|++++||||+++|.++++++++ .++|++||++|.||+|++++|. ++.+||++++ +.+
T Consensus 235 ~~~~p--~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~~--~~gP~lI~v~t~kg~G~~~~e~--~~~~~H~~~~f~~~~ 308 (621)
T 2o1s_A 235 GMVVP--GTLFEELGFNYIGPVDGHDVLGLITTLKNMRD--LKGPQFLHIMTKKGRGYEPAEK--DPITFHAVPKFDPSS 308 (621)
T ss_dssp ----C--HHHHHHTTCEEEEEEETTCHHHHHHHHHHHHH--SCSEEEEEEECCCTTCCCCC-------------------
T ss_pred hccCh--hhHHHHCCCeEeeeeCCCCHHHHHHHHHHHHH--cCCCEEEEEEEecccCCChhhc--CchhccCCCCCCCCc
Confidence 55444 57999999999989999999999999999998 4899999999999999999987 6789999987 445
Q ss_pred CCCCC--CCccchHHHHHHHHHHHHhcCCCEEEEecCCCCccchHHHHHhCCCceeecccchHHHHHHHHHHhcCCCeeE
Q 004946 393 SLPFG--NYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGLKPF 470 (722)
Q Consensus 393 g~~~~--~~~~s~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f~~~~p~R~~d~GIaE~~av~~AaGlA~~G~~p~ 470 (722)
+.+.+ ....+|+++|+++|.+++++|++|+++++||++++++..|+++||+||||+||+|++|+++|+|+|+.|+|||
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~v~~~~~d~~~~~~~~~~~~~~~~r~~~~gIaE~~~~~~a~G~A~~G~rp~ 388 (621)
T 2o1s_A 309 GCLPKSSGGLPSYSKIFGDWLCETAAKDNKLMAITPAMREGSGMVEFSRKFPDRYFDVAIAEQHAVTFAAGLAIGGYKPI 388 (621)
T ss_dssp ---------CCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTTTCHHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEE
T ss_pred CcccccccchHHHHHHHHHHHHHHHhhCcCEEEEeCcccCCcChHHHHHhCCCceEecCcCHHHHHHHHHHHHHCCCEEE
Confidence 53312 2356899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCccCCCCCCcCcHHHHHHhcCCCCcEEEeeCCHHHHHHHHHHHhhhC
Q 004946 471 CIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASID 550 (722)
Q Consensus 471 ~~t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~~ 550 (722)
++||++|++|++||+++++|++++||+++++++|++|+||+|||+.+|+++++++|||+|++|+|++|+++++++|++..
T Consensus 389 ~~~~~~F~~~a~dqi~~~~a~~~~pvv~~~~~~g~~g~~G~tH~~~~d~~~~~~iP~l~v~~P~d~~e~~~~l~~a~~~~ 468 (621)
T 2o1s_A 389 VAIYSTFLQRAYDQVLHDVAIQKLPVLFAIDRAGIVGADGQTHQGAFDLSYLRCIPEMVIMTPSDENECRQMLYTGYHYN 468 (621)
T ss_dssp EEEETTGGGGGHHHHHHTTTTTTCCCEEEEESCBCCCTTCGGGCBCSHHHHTTTSTTCEEECCSSHHHHHHHHHHHHHCC
T ss_pred EEehHhHHHHHHHHHHHHHHhcCCCEEEEEECCccCCCCCCccCchHHHHHHhcCCCCEEEecCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999998899999999999999999999999999999999999999999855
Q ss_pred CCCEEEEecCCCcccccCCCCCCCCccccccEEEEEeCCcEEEEEechhhHHHHHHHHHHHhcCCcEEEeecCccccchH
Q 004946 551 DRPVCFRYPRGAIVRTDLPGYRGIPIEEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDI 630 (722)
Q Consensus 551 ~~Pv~ir~~r~~~~~~~~p~~~~~~~~~igk~~vl~eG~dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~ 630 (722)
++|++||++|+..+..+.|. .+.+ ++||++++++|+|++||++|++++.|++| ++||+++|||++|++|||+
T Consensus 469 ~~Pv~i~~~r~~~~~~~~~~--~~~~-~~G~~~~~~~g~dv~iva~G~~~~~a~~A-----~~Gi~v~Vi~~~~~~P~d~ 540 (621)
T 2o1s_A 469 DGPSAVRYPRGNAVGVELTP--LEKL-PIGKGIVKRRGEKLAILNFGTLMPEAAKV-----AESLNATLVDMRFVKPLDE 540 (621)
T ss_dssp SSCEEEECCSSBCCCCCCCC--CCCC-CTTCCEEEECCSSEEEEEESTTHHHHHHH-----HHHHTCEEEECCEEESCCH
T ss_pred CCCEEEEeCCCCCCCCCCCc--cccc-cCCceEEeecCCCEEEEEecHHHHHHHHH-----cCCCCEEEEecCccCCCCH
Confidence 89999999998754433332 2456 78999999999999999999999999999 4599999999999999999
Q ss_pred HHHHHHhcCCCeEEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHH
Q 004946 631 KLVRELCQNHTFLITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALS 709 (722)
Q Consensus 631 e~i~~~~~~~~~vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~v~~ig~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~ 709 (722)
+++.+++++++++|||||+. .||||++|++++.++++ +.+++++|++|.|+++|+.+++++++|+|+++|+++|++
T Consensus 541 ~~i~~~~~~~~~vv~vEe~~~~gg~g~~v~~~l~~~~~---~~~v~~ig~~d~f~~~g~~~~l~~~~g~~~~~I~~~i~~ 617 (621)
T 2o1s_A 541 ALILEMAASHEALVTVEENAIMGGAGSGVNEVLMAHRK---PVPVLNIGLPDFFIPQGTQEEMRAELGLDAAGMEAKIKA 617 (621)
T ss_dssp HHHHHHHHHCSEEEEEEEEESTTSHHHHHHHHHHHTTC---CCCEEEEEECSSCCCCSCHHHHHHHTTCSHHHHHHHHHH
T ss_pred HHHHHHHccCCeEEEEECCCCCCCHHHHHHHHHHhcCC---CCCeEEEecCCcCCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 99999999999999999997 69999999999999874 568999999999999999999999999999999999998
Q ss_pred Hhh
Q 004946 710 LLG 712 (722)
Q Consensus 710 ll~ 712 (722)
++.
T Consensus 618 ~l~ 620 (621)
T 2o1s_A 618 WLA 620 (621)
T ss_dssp HHC
T ss_pred Hhc
Confidence 763
No 3
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=100.00 E-value=9e-101 Score=888.84 Aligned_cols=548 Identities=22% Similarity=0.310 Sum_probs=481.0
Q ss_pred hhccCCCHHHHHHHHHHHHHHHHHhHhcC-CCCCCCcchHHHHHHHHhh-c----cC----CCCcEEEecCCchH---HH
Q 004946 89 LRLKSLTIKELKQLAVEIRSELSSIVSKT-EKSLKSSLAAVELTVALHH-V----FH----APVDKILWDVGEQT---YA 155 (722)
Q Consensus 89 ~~~~~l~~~~l~~la~eiR~~ii~~~~~~-gGh~~~slg~vel~~aL~~-v----f~----~p~D~iv~d~GH~~---y~ 155 (722)
+++.+.+.+||+++|++||..+++++.+. +||+|++||++|++++||+ + ++ .++|+||||+||++ |+
T Consensus 3 ~~~~~~~~~~l~~~a~~iR~~~i~~~~~~~~GH~g~~l~~~e~~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~~~~ly~ 82 (616)
T 3mos_A 3 HKPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKSQDPRNPHNDRFVLSKGHAAPILYA 82 (616)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHTTHHHHHHHHHTTCBCCTTCTTCTTSCEEEESSGGGHHHHHH
T ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHhcCCCcCCcchhHHHHHHHHHHHhhccCCCCCCCCCCCeEEEcCccHHHHHHH
Confidence 45677789999999999999999999865 6999999999999999984 2 32 24899999999999 99
Q ss_pred HHHHhCc--hhhhhHHHhhC-CCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCC-CCeEEEEecCCCcccchH
Q 004946 156 HKILTGR--RSLIHTLRKKD-GISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGK-RECIVTVISNGTTMAGQA 231 (722)
Q Consensus 156 h~~ltGr--~~~~~~~r~~g-gl~g~~~~~es~~d~~~~G~~G~~ls~A~G~A~A~~l~~~-~~~Vv~viGDGa~~~G~~ 231 (722)
|++++|+ +++|.++||+| +++|||++.++.+| +++|++|+++|+|+|+|+|.++.+. +++|||++|||++++|++
T Consensus 83 ~~~l~G~~~~~~l~~~r~~~s~l~ghp~~~~~~~d-~~~G~lG~gl~~A~G~AlA~~~~~~~~~~vv~v~GDG~~~eG~~ 161 (616)
T 3mos_A 83 VWAEAGFLAEAELLNLRKISSDLDGHPVPKQAFTD-VATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGSV 161 (616)
T ss_dssp HHHHTTSSCGGGGGGTTCTTCSCCSSCCTTSTTCS-SCCCSTTCHHHHHHHHHHHHHHTSCCSCCEEEEEETGGGGSHHH
T ss_pred HHHHcCCCCHHHHHHhccCCCCCCCCCCCCCCccc-ccccccCCccHHHHHHHHHHHHhCCCCCEEEEEECccccccCcH
Confidence 9999996 78899999999 79999998877777 6999999999999999999986655 699999999999999999
Q ss_pred HHHHHHhhhcCC-CEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHH
Q 004946 232 YEAMSNAGYLDS-NMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVD 310 (722)
Q Consensus 232 ~EAln~A~~~~~-plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~ 310 (722)
|||||+|+++++ ++++|+|||+++ + +.+..... .. .
T Consensus 162 ~Eal~~A~~~~l~~livi~nnN~~~-i-------~~~~~~~~----------------------------~~-------~ 198 (616)
T 3mos_A 162 WEAMAFASIYKLDNLVAILDINRLG-Q-------SDPAPLQH----------------------------QM-------D 198 (616)
T ss_dssp HHHHHHHHHTTCTTEEEEEEECSBC-S-------SSBCTTTT----------------------------CH-------H
T ss_pred HHHHHHHHHcCCCcEEEEEECCCCC-C-------cCCccccc----------------------------Ch-------H
Confidence 999999999996 599999999973 2 22211000 00 0
Q ss_pred HHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEEEEEeeccCCCcccccccchhhccCCCCC
Q 004946 311 EYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGASD 390 (722)
Q Consensus 311 ~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kG~G~~~ae~~~~~~~~H~~~~~ 390 (722)
+...+|++|||+++ +|||||+++|.++++++ .++|++||++|.||+|++.+|+ +.+|||.++.
T Consensus 199 ---------~~~~~~~a~G~~~~-~VdG~d~~~l~~al~~~----~~~P~lI~v~T~kg~G~~~~e~---~~~~Hg~~~~ 261 (616)
T 3mos_A 199 ---------IYQKRCEAFGWHAI-IVDGHSVEELCKAFGQA----KHQPTAIIAKTFKGRGITGVED---KESWHGKPLP 261 (616)
T ss_dssp ---------HHHHHHHHTTCEEE-EEETTCHHHHHHHHHSC----CSSCEEEEEECCTTTTSTTTTT---CSSCTTCCCC
T ss_pred ---------HHHHHHHHcCCeEE-EEcCCCHHHHHHHHHhc----CCCCEEEEEEEecccccccccC---chhhcCCCCC
Confidence 11457999999998 88999999999999654 3789999999999999987775 8899998651
Q ss_pred ---------------CCCCCC-----------------C---------CCccchHHHHHHHHHHHHhcCCCEEEEecCCC
Q 004946 391 ---------------SNSLPF-----------------G---------NYSRTYDDCFIEALVMEAEKDKDIVVVHAGME 429 (722)
Q Consensus 391 ---------------~tg~~~-----------------~---------~~~~s~~~a~~~~L~~~~~~d~~iv~i~ad~~ 429 (722)
++++.. + ....+++++|+++|.+++++||+++++++||+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~r~a~~~~L~~l~~~d~~vv~~~aD~~ 341 (616)
T 3mos_A 262 KNMAEQIIQEIYSQIQSKKKILATPPQEDAPSVDIANIRMPSLPSYKVGDKIATRKAYGQALAKLGHASDRIIALDGDTK 341 (616)
T ss_dssp HHHHHHHHHHHHHTCCCCCCCCCBCCCCCCCCCCCSCCCCSSCCCCCTTCBCCHHHHHHHHHHHHHHHCTTEEEEESSCH
T ss_pred HHHHHHHHHHHHHHHHhhhhhCcCccchhhhhhhhhccccCCCcccccccchHHHHHHHHHHHHHHhhCCCEEEEeCCcC
Confidence 222211 0 11235669999999999999999999999999
Q ss_pred CccchHHHHHhCCCceeecccchHHHHHHHHHHhcCCC-eeEEEecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCc-cC
Q 004946 430 MDLSLQLFQEKFPERYFDVGMAEQHAVTFSAGLACGGL-KPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VG 507 (722)
Q Consensus 430 ~~~~l~~f~~~~p~R~~d~GIaE~~av~~AaGlA~~G~-~p~~~t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G 507 (722)
+++++..|+++||+||||+||+|++|+++|+|||+.|+ +||+++|++|++|++|||++. +++++||+++.+++|+ +|
T Consensus 342 ~~~~~~~~~~~~p~R~~d~gIaE~~~v~~a~G~A~~G~~~~~~~~f~~Fl~~a~dqi~~~-a~~~~~v~~v~~~~g~~~G 420 (616)
T 3mos_A 342 NSTFSEIFKKEHPDRFIECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQIRMA-AISESNINLCGSHCGVSIG 420 (616)
T ss_dssp HHHSHHHHHHHCGGGEEECCSCHHHHHHHHHHHHGGGCCEEEEEEEGGGGGGGHHHHHHH-HHTTCCEEEEEESBSGGGC
T ss_pred CCcchhhHHHhCCCCeEEcCccHHHHHHHHHHHHHcCCCCEEEEehHHHHHHHHHHHHHH-HHhCCCeEEEEECCCcccc
Confidence 99999999999999999999999999999999999997 799999999999999999875 8999999999999999 89
Q ss_pred CCCCCcCcHHHHHHhcCCCCcEEEeeCCHHHHHHHHHHHhhhCCCCEEEEecCCCcccccCCCCCCCCccccccEEEEEe
Q 004946 508 SDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRYPRGAIVRTDLPGYRGIPIEEIGKGKVLVE 587 (722)
Q Consensus 508 ~dG~TH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~~~~Pv~ir~~r~~~~~~~~p~~~~~~~~~igk~~vl~e 587 (722)
+||+|||+.+|+++++++|||+|++|+|++|++.++++|++ .++|+++|++|+..+.. . .....+ ++||++++++
T Consensus 421 ~dG~tH~~~ed~a~l~~iP~l~V~~P~d~~e~~~~l~~a~~-~~gp~~ir~~r~~~p~~--~-~~~~~~-~~Gka~vl~e 495 (616)
T 3mos_A 421 EDGPSQMALEDLAMFRSVPTSTVFYPSDGVATEKAVELAAN-TKGICFIRTSRPENAII--Y-NNNEDF-QVGQAKVVLK 495 (616)
T ss_dssp TTCGGGCBSSHHHHHHTSTTEEEECCCSHHHHHHHHHHHHT-CCSEEEEECCSSCCBCC--S-CTTCCC-CTTCCEEEEC
T ss_pred CCCCcccCHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHh-cCCCEEEEEeCCCCCcc--C-CCcccc-cCCeEEEEEe
Confidence 99999999999999999999999999999999999999987 57999999999864321 1 123456 7899999999
Q ss_pred CCc--EEEEEechhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcCC-CeEEEEcCCC-CCChHHHHHHHHH
Q 004946 588 GKD--VALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNH-TFLITVEEGS-IGGFGSHVSHFIA 663 (722)
Q Consensus 588 G~d--v~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~-~~vvvvEe~~-~gG~gs~v~~~l~ 663 (722)
|+| ++||++|++++.|++|++.|+++||+++|||++|++|||+++|.++++++ ++||||||+. .||||++|++++.
T Consensus 496 g~d~dv~iva~G~~v~~al~Aa~~L~~~Gi~v~Vidlr~l~PlD~e~i~~~~~~~~~~vvvvEe~~~~GG~G~~v~~~l~ 575 (616)
T 3mos_A 496 SKDDQVTVIGAGVTLHEALAAAELLKKEKINIRVLDPFTIKPLDRKLILDSARATKGRILTVEDHYYEGGIGEAVSSAVV 575 (616)
T ss_dssp CSSEEEEEECCTHHHHHHHHHHHHHHTTTCEEEEEECSEEESCCHHHHHHHHHHTTTEEEEEEEEESTTSHHHHHHHHHT
T ss_pred CCCCCEEEEEeCHHHHHHHHHHHHHHhcCCCEEEEEeCccCCCCHHHHHHHHHhcCCEEEEEcCCCCCcCHHHHHHHHHH
Confidence 876 99999999999999999999999999999999999999999999999988 8999999997 7999999999998
Q ss_pred hcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHH
Q 004946 664 LDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATAL 708 (722)
Q Consensus 664 ~~~~~~~~~~v~~ig~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~ 708 (722)
+++ +.+++++|++ .|+++|+++++++++|||+++|+++|+
T Consensus 576 ~~~----~~~v~~~g~~-~f~~~g~~~~l~~~~gl~~~~I~~~i~ 615 (616)
T 3mos_A 576 GEP----GITVTHLAVN-RVPRSGKPAELLKMFGIDRDAIAQAVR 615 (616)
T ss_dssp TCT----TCEEEEEEEC-SCCCCSCHHHHHHHTTCSHHHHHHHHT
T ss_pred hcC----CCCEEEEeCC-CCCCCCCHHHHHHHHCcCHHHHHHHHh
Confidence 865 4689999998 599999999999999999999999885
No 4
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=100.00 E-value=1.4e-98 Score=868.53 Aligned_cols=532 Identities=18% Similarity=0.215 Sum_probs=461.7
Q ss_pred CCHHHHHHHHHHHHHHHHHhHhc-CCCCCCCcchHHHHHHHHhhccC--------CCCcEEEecCCchH---HHHHHHhC
Q 004946 94 LTIKELKQLAVEIRSELSSIVSK-TEKSLKSSLAAVELTVALHHVFH--------APVDKILWDVGEQT---YAHKILTG 161 (722)
Q Consensus 94 l~~~~l~~la~eiR~~ii~~~~~-~gGh~~~slg~vel~~aL~~vf~--------~p~D~iv~d~GH~~---y~h~~ltG 161 (722)
++.++|+++|++||..+++++++ ++||+|++||++|++++||++|+ .++|+||||+||++ |+|++++|
T Consensus 1 ~~~~~l~~~a~~iR~~~i~~v~~a~~GH~g~~lg~~ei~~~L~~~~~~~p~~p~~~~rDrfvls~GH~~~~lYa~l~l~G 80 (632)
T 3l84_A 1 MNIQILQEQANTLRFLSADMVQKANSGHPGAPLGLADILSVLSYHLKHNPKNPTWLNRDRLVFSGGHASALLYSFLHLSG 80 (632)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHTTTCCCCTTCTTCTTSCEEEESSGGGHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcChhHHHHHHHHHHHhCcCCCCCCCCCCCEEEEcCCcccHHHHHHHHHhC
Confidence 46789999999999999999996 79999999999999999988875 25899999999999 99999999
Q ss_pred ch---hhhhHHHhhCCC-CCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCC-------CCeEEEEecCCCcccch
Q 004946 162 RR---SLIHTLRKKDGI-SGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGK-------RECIVTVISNGTTMAGQ 230 (722)
Q Consensus 162 r~---~~~~~~r~~ggl-~g~~~~~es~~d~~~~G~~G~~ls~A~G~A~A~~l~~~-------~~~Vv~viGDGa~~~G~ 230 (722)
++ ++|.++||+++. +|||++ +++++.+++|++|+++|+|+|+|+|.++++. +++|||++|||++++|+
T Consensus 81 ~~~~~~~l~~~r~~~s~~~ghp~~-~~~g~~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~d~~v~~v~GDG~~~eG~ 159 (632)
T 3l84_A 81 YDLSLEDLKNFRQLHSKTPGHPEI-STLGVEIATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGI 159 (632)
T ss_dssp CSCCHHHHTTTTCTTCSSCSSCCT-TSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTTCCCCEEEEEEHHHHHSHH
T ss_pred CCCCHHHHHHHhcCCCCCCCCCCC-CCCCcccCCcchhhHHHHHHHHHHHHHhhccccccCCCCCeEEEEECCcchhhcc
Confidence 95 789999999985 699999 9999999999999999999999999998754 89999999999999999
Q ss_pred HHHHHHHhhhcCC-CEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHH
Q 004946 231 AYEAMSNAGYLDS-NMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKV 309 (722)
Q Consensus 231 ~~EAln~A~~~~~-plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~ 309 (722)
+||||++|+++++ |+|+|+|||+++ ++++++..
T Consensus 160 ~~Eal~~A~~~~L~~livi~nnN~~~--------i~~~~~~~-------------------------------------- 193 (632)
T 3l84_A 160 SYEACSLAGLHKLDNFILIYDSNNIS--------IEGDVGLA-------------------------------------- 193 (632)
T ss_dssp HHHHHHHHHHTTCTTEEEEEEECSEE--------TTEEGGGT--------------------------------------
T ss_pred HHHHHHHHHHcCCCcEEEEEECCCcc--------cccchhhh--------------------------------------
Confidence 9999999999995 599999999983 23333211
Q ss_pred HHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEEEEEeeccCCCcccccccchhhccCCCC
Q 004946 310 DEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGAS 389 (722)
Q Consensus 310 ~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kG~G~~~ae~~~~~~~~H~~~~ 389 (722)
..++...+|++|||+++ ++||||+++|.++|+++++ .++|++||++|.||+|++++|+ ..+|||.++
T Consensus 194 -------~~~d~~~~~~a~G~~~~-~vdGhd~~~l~~al~~A~~--~~~P~lI~v~T~kG~G~~~~e~---~~~~Hg~~l 260 (632)
T 3l84_A 194 -------FNENVKMRFEAQGFEVL-SINGHDYEEINKALEQAKK--STKPCLIIAKTTIAKGAGELEG---SHKSHGAPL 260 (632)
T ss_dssp -------CCCCHHHHHHHTTCEEE-EEETTCHHHHHHHHHHHHT--CSSCEEEEEECCTTTTCGGGTT---CGGGSSSCC
T ss_pred -------cChhHHHHHHHcCCeEE-EEeeCCHHHHHHHHHHHHh--CCCCEEEEEeeEeeecCCCCCC---cccccCCCC
Confidence 01233678999999999 8999999999999999998 5899999999999999999875 789999973
Q ss_pred ---------------CC------------------CCCCC-------------------------C--------CCccch
Q 004946 390 ---------------DS------------------NSLPF-------------------------G--------NYSRTY 403 (722)
Q Consensus 390 ---------------~~------------------tg~~~-------------------------~--------~~~~s~ 403 (722)
+. +|++. . ......
T Consensus 261 ~~e~~~~~~~~l~~~~~~~f~v~~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~a~ 340 (632)
T 3l84_A 261 GEEVIKKAKEQAGFDPNISFHIPQASKIRFESAVELGDLEEAKWKDKLEKSAKKELLERLLNPDFNKIAYPDFKGKDLAT 340 (632)
T ss_dssp CHHHHHHHHHHHTCCTTCCSCCCHHHHHHHHTHHHHHHHHHHHHHHHHHHSSCHHHHHHHHSCCSTTCCCCCCTTCCBCH
T ss_pred CHHHHHHHHHHhCCCCCCCccCChHHHHHHHHHHhhcchhHHHHHHHhhcccCchhhhhhCccchhhhcchhccccchHH
Confidence 00 01000 0 023456
Q ss_pred HHHHHHHHHHHHhcCCCEEEEecCCCCccchH-HHHHhC-CCceeecccchHHHHHHHHHHhcC-CCeeEEEecHhhHHH
Q 004946 404 DDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQ-LFQEKF-PERYFDVGMAEQHAVTFSAGLACG-GLKPFCIIPSAFLQR 480 (722)
Q Consensus 404 ~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~l~-~f~~~~-p~R~~d~GIaE~~av~~AaGlA~~-G~~p~~~t~~~Fl~r 480 (722)
+++++++|.++++.+|+++++++|++++++.. .+.++| |+||||+||+||+|+++|+|||+. |+|||++||++|++|
T Consensus 341 r~a~~~~l~~l~~~~p~~v~~~aDl~~s~~~~~~~~~~f~p~R~~d~GIaE~~~v~~a~GlA~~gG~~P~~~~f~~F~~~ 420 (632)
T 3l84_A 341 RDSNGEILNVLAKNLEGFLGGSADLGPSNKTELHSMGDFVEGKNIHFGIREHAMAAINNAFARYGIFLPFSATFFIFSEY 420 (632)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTSCBTTTSSEEECCSCHHHHHHHHHHHHHHSSCEEEEEEEGGGHHH
T ss_pred HHHHHHHHHHHHhhCCCEEEEecccCCccCcchhcccccCCCCeEEeCccHHHHHHHHHHHHHcCCCEEEEEecHHHHHH
Confidence 88899999999999999999999998665443 123578 999999999999999999999999 999999999999999
Q ss_pred HHHHHHHHHhcCCCCEEEEEeCCCc-cCCCCCCcCcHHHHHHhcCCCCcEEEeeCCHHHHHHHHHHHhhhCCCCEEEEec
Q 004946 481 AYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRYP 559 (722)
Q Consensus 481 a~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~~~~Pv~ir~~ 559 (722)
++||| +++|++++||++++++.|+ +|+||+|||+++|+++||++|||+|++|+|++|++.++++|++ .++|++||++
T Consensus 421 ~~~~i-r~~a~~~~pv~~~~t~~g~g~G~dG~THq~~ed~a~lr~iP~l~V~~P~d~~e~~~~l~~A~~-~~~Pv~ir~~ 498 (632)
T 3l84_A 421 LKPAA-RIAALMKIKHFFIFTHDSIGVGEDGPTHQPIEQLSTFRAMPNFLTFRPADGVENVKAWQIALN-ADIPSAFVLS 498 (632)
T ss_dssp HHHHH-HHHHHHTCCCEEEEECCSGGGCTTCGGGSCSSHHHHHHHSSSCEEECCSSHHHHHHHHHHHHH-CSSCEEEECC
T ss_pred HHHHH-HHHhccCCCEEEEEECCCcCCCCCCCCCCCHhHHHHHhcCCCCEEEecCCHHHHHHHHHHHHh-CCCCEEEEEc
Confidence 99998 6799999999999977777 8999999999999999999999999999999999999999997 7899999999
Q ss_pred CCCcccccCCCCCCCCccccccE-EEEEe--CCcEEEEEechhhHHHHHHHHHHHhcCCcEEEeecCccccchHHH--HH
Q 004946 560 RGAIVRTDLPGYRGIPIEEIGKG-KVLVE--GKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKL--VR 634 (722)
Q Consensus 560 r~~~~~~~~p~~~~~~~~~igk~-~vl~e--G~dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~--i~ 634 (722)
|+.. ++....... +++++ +++++ |+|++||++|++++.|++|++.|+++||+++|||++|++|||++. +.
T Consensus 499 r~~~----~~~~~~~~~-~~~~g~~vl~~~~g~dvtiia~G~~v~~al~Aa~~L~~~Gi~~~Vi~~~~i~PlD~~~~~~~ 573 (632)
T 3l84_A 499 RQKL----KALNEPVFG-DVKNGAYLLKESKEAKFTLLASGSEVWLCLESANELEKQGFACNVVSMPCFELFEKQDKAYQ 573 (632)
T ss_dssp SSCB----CCCCCCSBC-CGGGSSEEEECCTTCSEEEEECGGGHHHHHHHHHHHHHTTCCEEEEECSBHHHHHTSCHHHH
T ss_pred CCCC----CCCcccccc-ccccccEEEEecCCCCEEEEEechHHHHHHHHHHHHHhcCCCeEEEecCcCCCcchhHHHHH
Confidence 9874 222211223 67777 88999 899999999999999999999999999999999999999999874 55
Q ss_pred HHhcCCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHH
Q 004946 635 ELCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALS 709 (722)
Q Consensus 635 ~~~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~v~~ig~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~ 709 (722)
+.+.+ +.|||||++...||++.+ . +++|+ |+|+++|+.+++++++|||+++|++++++
T Consensus 574 ~sv~~-~~vv~vE~~~~~g~~~~~--------------~-~~iGi-d~Fg~sg~~~~l~~~~Glt~~~I~~~i~~ 631 (632)
T 3l84_A 574 ERLLK-GEVIGVEAAHSNELYKFC--------------H-KVYGI-ESFGESGKDKDVFERFGFSVSKLVNFILS 631 (632)
T ss_dssp HHHCC-SEEEEECSSCCGGGGGTC--------------S-EEECC-CSCCCSSCHHHHHHHTTCSHHHHHHHHTT
T ss_pred HHhcC-CCEEEEeCChhhhHHHHh--------------C-eEEEc-CCCcccCCHHHHHHHhCcCHHHHHHHHhh
Confidence 55555 679999999877775321 1 67898 99999999999999999999999998853
No 5
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=100.00 E-value=7.2e-97 Score=859.86 Aligned_cols=541 Identities=19% Similarity=0.209 Sum_probs=468.5
Q ss_pred HHHHHHHH-HHHHHHHHHhHhcC-CCCCCCcchHHHHHHHHhh-ccC-C-------CCcEEEecCCchH---HHHHHHhC
Q 004946 96 IKELKQLA-VEIRSELSSIVSKT-EKSLKSSLAAVELTVALHH-VFH-A-------PVDKILWDVGEQT---YAHKILTG 161 (722)
Q Consensus 96 ~~~l~~la-~eiR~~ii~~~~~~-gGh~~~slg~vel~~aL~~-vf~-~-------p~D~iv~d~GH~~---y~h~~ltG 161 (722)
.+||+++| ++||..+++++.+. +||+|++||++|++.+||+ +|+ . ++||||||+||++ |+|++++|
T Consensus 19 ~~~l~~~a~~~iR~~~~~~v~~a~sGH~g~~ls~a~i~~~L~~~~l~~~p~~p~~~~rDrfvls~GH~s~~lYa~l~l~G 98 (700)
T 3rim_A 19 WTEIDSAAVDTIRVLAADAVQKVGNGHPGTAMSLAPLAYTLFQRTMRHDPSDTHWLGRDRFVLSAGHSSLTLYIQLYLGG 98 (700)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHTHHHHHHHHHTTCCCCTTCTTCTTCCEEEESSTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHhCCCCCCCCCCCCCeEEECCCchhHHHHHHHHHhC
Confidence 45799999 89999999999964 7999999999999999996 775 2 4899999999999 99999999
Q ss_pred c---hhhhhHHHhhCC-CCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHc-------------CCCCeEEEEecCC
Q 004946 162 R---RSLIHTLRKKDG-ISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIK-------------GKRECIVTVISNG 224 (722)
Q Consensus 162 r---~~~~~~~r~~gg-l~g~~~~~es~~d~~~~G~~G~~ls~A~G~A~A~~l~-------------~~~~~Vv~viGDG 224 (722)
+ .+++.++||+|+ ++|||++.+++++.+++|++|+++|+|+|||+|.+++ +.+++|||++|||
T Consensus 99 ~~~~~~~l~~fr~~gs~~~ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~k~~~~~~~~~~~~~~~~~~~~v~~~~GDG 178 (700)
T 3rim_A 99 FGLELSDIESLRTWGSKTPGHPEFRHTPGVEITTGPLGQGLASAVGMAMASRYERGLFDPDAEPGASPFDHYIYVIASDG 178 (700)
T ss_dssp SSCCHHHHTTTTSTTCSCCSSCCBTTBTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTSCTTCSTTCCCEEEEEEHH
T ss_pred CCCCHHHHHHhhcCCCCCCCCCCCCCCCCccccccccCCcchHHHHHHHHHHHHhhhccccccccccCCCCeEEEEECCc
Confidence 9 888999999998 6999999899999999999999999999999999975 5689999999999
Q ss_pred CcccchHHHHHHHhhhcCC-CEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHH
Q 004946 225 TTMAGQAYEAMSNAGYLDS-NMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMH 303 (722)
Q Consensus 225 a~~~G~~~EAln~A~~~~~-plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~ 303 (722)
++++|++|||+|+|+++++ |||+|++||+++ ++.+++..
T Consensus 179 ~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~s--------i~~~~~~~-------------------------------- 218 (700)
T 3rim_A 179 DIEEGVTSEASSLAAVQQLGNLIVFYDRNQIS--------IEDDTNIA-------------------------------- 218 (700)
T ss_dssp HHHSHHHHHHHHHHHHTTCTTEEEEEEECSEE--------TTEEGGGT--------------------------------
T ss_pred ccccChHHHHHHHHHHcCCCcEEEEEECCCcc--------cccchhhc--------------------------------
Confidence 9999999999999999997 599999999983 23333210
Q ss_pred HHHHHHHHHhhcccCCChhhhHhhcCceEEeec-CCCCHHHHHHHHHHHHhcCCCCCEEEEEEeeccCCCcccccccchh
Q 004946 304 EWAAKVDEYARGMIGPQGSTLFEELGLYYIGPV-DGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIE 382 (722)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~v-dGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kG~G~~~ae~~~~~~ 382 (722)
...+...+|++|||+++. | ||||+++|.++++++++. .++|++||++|.||+|++++|+ ..
T Consensus 219 -------------~~~~~~~~~~a~G~~~~~-V~DG~D~~al~~Al~~A~~~-~~~P~lI~~~T~kG~G~~~~e~---~~ 280 (700)
T 3rim_A 219 -------------LCEDTAARYRAYGWHVQE-VEGGENVVGIEEAIANAQAV-TDRPSFIALRTVIGYPAPNLMD---TG 280 (700)
T ss_dssp -------------CCCCHHHHHHHHTCEEEE-EECTTCHHHHHHHHHHHHHC-CSSCEEEEEECCTTTTCTTTTT---SH
T ss_pred -------------cchhHHHHHHHcCCeEEE-ECCCCCHHHHHHHHHHHHHc-CCCCEEEEEEEEeeecCCccCC---Cc
Confidence 012235689999999995 6 999999999999999873 4899999999999999999986 68
Q ss_pred hccCCCC---------------CCC------------------CC--------------------------------C--
Q 004946 383 KQQEGAS---------------DSN------------------SL--------------------------------P-- 395 (722)
Q Consensus 383 ~~H~~~~---------------~~t------------------g~--------------------------------~-- 395 (722)
+|||.++ +.. |+ +
T Consensus 281 ~~Hg~~~~~e~~~~~~~~l~~~~~~~f~v~~~v~~~~~~~~~~g~~~~~~w~~~~~~~~~~~p~~~~~~~~~~~~~~p~~ 360 (700)
T 3rim_A 281 KAHGAALGDDEVAAVKKIVGFDPDKTFQVREDVLTHTRGLVARGKQAHERWQLEFDAWARREPERKALLDRLLAQKLPDG 360 (700)
T ss_dssp HHHHSCCCHHHHHHHHHHHTCCTTCSSCCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCCTT
T ss_pred cccCCCCCHHHHHHHHHHcCCCcccCccCCHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhChHHHHHHHHHhccCCCcc
Confidence 8999764 000 10 0
Q ss_pred ----CC-----CCccchHHHHHHHHHHHHhcCCCEEEEecCCCCccc-----hHHHHHhC------C----Cceeecccc
Q 004946 396 ----FG-----NYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLS-----LQLFQEKF------P----ERYFDVGMA 451 (722)
Q Consensus 396 ----~~-----~~~~s~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~-----l~~f~~~~------p----~R~~d~GIa 451 (722)
.+ ....+++++|+++|.+++++||+++++++||+.+++ +..|+++| | +||||+||+
T Consensus 361 ~~~~~p~~~~~~~~~atr~a~~~~L~~l~~~~p~vv~~saDl~~s~~t~~~~~~~f~~~~~~~~~~p~~~~~R~id~GIa 440 (700)
T 3rim_A 361 WDADLPHWEPGSKALATRAASGAVLSALGPKLPELWGGSADLAGSNNTTIKGADSFGPPSISTKEYTAHWYGRTLHFGVR 440 (700)
T ss_dssp TTSSCCCCCTTSSCEEHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTCCEESCGGGCCSSCCEETTCCEEECCSC
T ss_pred hhhhcccccccccchHHHHHHHHHHHHHHhhCCCEEEEeCCccCCCCcccccchhhcccccccccCCcccCCceeecCcc
Confidence 00 123467899999999999999999999999998766 46788888 8 599999999
Q ss_pred hHHHHHHHHHHhcC-CCeeEEEecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCc-cCCCCCCcCcHHHHHHhcCCCCcE
Q 004946 452 EQHAVTFSAGLACG-GLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMI 529 (722)
Q Consensus 452 E~~av~~AaGlA~~-G~~p~~~t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~d~a~~~~iP~l~ 529 (722)
||+|+++|+|||+. |++||++||+.|+.++++|| +++|++++||++++++.|+ +|+||+|||+++|+++||++|||+
T Consensus 441 E~~mv~~A~GlA~~gG~~Pv~~tF~~F~d~~~~~i-r~~al~~lpvv~v~thdg~gvG~dG~THq~ied~a~lr~iPnl~ 519 (700)
T 3rim_A 441 EHAMGAILSGIVLHGPTRAYGGTFLQFSDYMRPAV-RLAALMDIDTIYVWTHDSIGLGEDGPTHQPIEHLSALRAIPRLS 519 (700)
T ss_dssp HHHHHHHHHHHHHHSSCEEEEEEEGGGGGGGHHHH-HHHHHHTCCCEEEEECCSGGGCTTCTTTSCSSHHHHHHTSTTCE
T ss_pred HHHHHHHHHHHHHcCCCEEEEEecHHHHHHHHHHH-HHhcCCCCCEEEEEeCCCcccCCCCCccCChhHHHHHhcCCCCE
Confidence 99999999999999 99999999999999999885 6799999999999988777 899999999999999999999999
Q ss_pred EEeeCCHHHHHHHHHHHhhhCC--CCEEEEecCCCcccccCCCCCCCCccccccEEEEEeCC--------cEEEEEechh
Q 004946 530 VMAPSDEDELVDMVATVASIDD--RPVCFRYPRGAIVRTDLPGYRGIPIEEIGKGKVLVEGK--------DVALLGYGAM 599 (722)
Q Consensus 530 V~~Psd~~E~~~~l~~a~~~~~--~Pv~ir~~r~~~~~~~~p~~~~~~~~~igk~~vl~eG~--------dv~lva~Gs~ 599 (722)
|++|+|++|++.++++|++..+ +|++||++|+..+. ++....+.+ ++|+ +++++|+ ||+||++|++
T Consensus 520 V~~Pad~~e~~~~l~~Ai~~~~~~~Pv~ir~~r~~~~~--~~~~~~~~~-~~G~-~vlr~g~~~~~~~~~dvtiia~G~~ 595 (700)
T 3rim_A 520 VVRPADANETAYAWRTILARRNGSGPVGLILTRQGVPV--LDGTDAEGV-ARGG-YVLSDAGGLQPGEEPDVILIATGSE 595 (700)
T ss_dssp EECCSSHHHHHHHHHHHHTTTTCSSCEEEECCSSEECC--CTTCCHHHH-HHSC-EEEECCSCCCTTCCCSEEEEECGGG
T ss_pred EEeCCCHHHHHHHHHHHHHccCCCCCEEEEeccccCCC--cCccccccc-CCCc-EEEecCCccccCCCCCEEEEEechH
Confidence 9999999999999999998666 79999999987543 222112345 6787 7899986 9999999999
Q ss_pred hHHHHHHHHHHHhcCCcEEEeecCccccchH---HHHHHHhcC-CCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceE
Q 004946 600 VQNCLKARALLSKLGIDVTVADARFCKPLDI---KLVRELCQN-HTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWR 675 (722)
Q Consensus 600 v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~---e~i~~~~~~-~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~v~ 675 (722)
++.|++|++.|+++||+++|||++|++|||. +.+.+++++ ++.+|+||++...||. +++.+++ +
T Consensus 596 v~~al~Aa~~L~~~Gi~~~VVd~~~i~p~D~~~~~~~~~v~~~~~~~~vtvEe~~~~G~~----~~~~~~~--------~ 663 (700)
T 3rim_A 596 VQLAVAAQTLLADNDILARVVSMPCLEWFEAQPYEYRDAVLPPTVSARVAVEAGVAQCWH----QLVGDTG--------E 663 (700)
T ss_dssp HHHHHHHHHHHHTTTCCEEEEECSCHHHHHHSCHHHHHHHSCTTCCCEEEECSSCSGGGH----HHHCTTC--------E
T ss_pred HHHHHHHHHHHHhcCCCeEEEEeccccccCcccHHHHHHHhcccceEEEEEeCCCchhHH----HHHhcCC--------c
Confidence 9999999999999999999999999999999 556666664 7889999999876664 4444332 5
Q ss_pred EEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHhh
Q 004946 676 PIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLG 712 (722)
Q Consensus 676 ~ig~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~ll~ 712 (722)
++|+ |+|+.||+.+++++++|||+++|+++|+++++
T Consensus 664 ~igi-d~Fg~sg~~~~l~~~~Glt~e~I~~~i~~~l~ 699 (700)
T 3rim_A 664 IVSI-EHYGESADHKTLFREYGFTAEAVAAAAERALD 699 (700)
T ss_dssp EECC-CSCCCSSCHHHHHHHTTCSHHHHHHHHHHHHC
T ss_pred EEcc-CcCcCcCCHHHHHHHhCcCHHHHHHHHHHHhh
Confidence 7898 99999999999999999999999999998874
No 6
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=100.00 E-value=6.4e-97 Score=861.21 Aligned_cols=548 Identities=18% Similarity=0.225 Sum_probs=459.5
Q ss_pred ccCCCHHHHHHHH-HHHHHHHHHhHhc-CCCCCCCcchHHHHHHHHhh-ccC--------CCCcEEEecCCchH---HHH
Q 004946 91 LKSLTIKELKQLA-VEIRSELSSIVSK-TEKSLKSSLAAVELTVALHH-VFH--------APVDKILWDVGEQT---YAH 156 (722)
Q Consensus 91 ~~~l~~~~l~~la-~eiR~~ii~~~~~-~gGh~~~slg~vel~~aL~~-vf~--------~p~D~iv~d~GH~~---y~h 156 (722)
++|++.++|+++| ++||..+++++.+ ++||+|++||++|++++||+ +|+ .++||||||+||++ |+|
T Consensus 21 ~~~~~~~~l~~~a~~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~l~~~p~~p~~~~rDrfvls~GH~~~~lYa~ 100 (690)
T 3m49_A 21 QSNAMSHSIEQLSINTIRTLSIDAIEKANSGHPGMPMGAAPMAYTLWTQFMKHNPNNPTWFNRDRFVLSAGHGSMLLYSL 100 (690)
T ss_dssp -----CCSHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHTCCCCTTCTTCTTSCEEEESSGGGHHHHHHH
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEECCccHHHHHHHH
Confidence 6777778899999 8999999999985 79999999999999999994 654 25899999999999 999
Q ss_pred HHHhCc---hhhhhHHHhhCCCC-CCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCC----------CCeEEEEec
Q 004946 157 KILTGR---RSLIHTLRKKDGIS-GYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGK----------RECIVTVIS 222 (722)
Q Consensus 157 ~~ltGr---~~~~~~~r~~ggl~-g~~~~~es~~d~~~~G~~G~~ls~A~G~A~A~~l~~~----------~~~Vv~viG 222 (722)
++++|+ .++|.++||+|+.. |||++.+++++.+++|++|+++|+|+|||+|.++++. +++|||++|
T Consensus 101 l~l~G~~~~~~~l~~~rq~gs~~~Ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~v~~i~G 180 (690)
T 3m49_A 101 LHLSGYDVTMDDLKNFRQWGSKTPGHPEYGHTAGVDATTGPLGQGIATAVGMAMAERHLAAKYNRDAYNIVDHYTYAICG 180 (690)
T ss_dssp HHHTTSSCCHHHHTTTTCTTCSSCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCSCCCEEEEEC
T ss_pred HHHHCCCCCHHHHHhhccCCCCCCCCCCCCCCCccccCCccccccHHHHHHHHHHHHHhhccccccccccCCCeEEEEEC
Confidence 999999 88999999999855 9999999999999999999999999999999987653 899999999
Q ss_pred CCCcccchHHHHHHHhhhcCC-CEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCcc
Q 004946 223 NGTTMAGQAYEAMSNAGYLDS-NMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRG 301 (722)
Q Consensus 223 DGa~~~G~~~EAln~A~~~~~-plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~ 301 (722)
||++++|++|||+++|+++++ |+|+|+|||+++ +++++...
T Consensus 181 DG~l~eG~~~Eal~~A~~~~L~~livI~dnN~~~--------i~~~~~~~------------------------------ 222 (690)
T 3m49_A 181 DGDLMEGVSAEASSLAAHLQLGRLVVLYDSNDIS--------LDGDLNRS------------------------------ 222 (690)
T ss_dssp HHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSBC--------SSSBGGGT------------------------------
T ss_pred chhhhhccHHHHHHHHHHhCCCeEEEEEECCCee--------cccchhhc------------------------------
Confidence 999999999999999999995 599999999983 23332200
Q ss_pred HHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEEEEEeeccCCCcccccccch
Q 004946 302 MHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAI 381 (722)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kG~G~~~ae~~~~~ 381 (722)
..++...+|++|||+++.++||||+++|.++|+++++. .++|++||++|.||+|++..|+ +
T Consensus 223 ---------------~~~d~~~~~~a~G~~~~~v~DG~d~~~l~~Al~~a~~~-~~~P~lI~v~T~kG~G~~~~~~---~ 283 (690)
T 3m49_A 223 ---------------FSESVEDRYKAYGWQVIRVEDGNDIEAIAKAIEEAKAD-EKRPTLIEVRTTIGFGSPNKSG---K 283 (690)
T ss_dssp ---------------CCCCHHHHHHHHTCEEEEESCTTCHHHHHHHHHHHHHC-CSSCEEEEEECCTTTTCTTTTT---S
T ss_pred ---------------cchhHHHHHHHcCCcEEEEecCCCHHHHHHHHHHHHhc-CCCCEEEEEEeecccccCcccC---c
Confidence 01233568999999999777999999999999999872 4799999999999999977664 8
Q ss_pred hhccCCCC---------------CC------CC--------C-----C--------------------------------
Q 004946 382 EKQQEGAS---------------DS------NS--------L-----P-------------------------------- 395 (722)
Q Consensus 382 ~~~H~~~~---------------~~------tg--------~-----~-------------------------------- 395 (722)
.+|||.++ +. ++ . .
T Consensus 284 ~~~Hg~~~~~e~~~~~~~~l~~~~~~~F~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~a~~~~~~~~~~lp 363 (690)
T 3m49_A 284 SASHGSPLGVEETKLTKEAYAWTAEQDFHVAEEVYENFRKTVQDVGETAQAEWNTMLGEYAQAYPELANELQAAMNGLLP 363 (690)
T ss_dssp GGGTSSCCCHHHHHHHHHHTTCCCCSTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTCCC
T ss_pred ccccCCCCCHHHHHHHHHHhCCCCCCCCcCChhHHHHHHHHHhhhcchhhHHHHHHHHHHHHhCHHHHHHHHHHhcccCc
Confidence 89999873 00 00 0 0
Q ss_pred ------CC----CCccchHHHHHHHHHHHHhcCCCEEEEecCCCCccch-----HHHHHh-CCCceeecccchHHHHHHH
Q 004946 396 ------FG----NYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL-----QLFQEK-FPERYFDVGMAEQHAVTFS 459 (722)
Q Consensus 396 ------~~----~~~~s~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~l-----~~f~~~-~p~R~~d~GIaE~~av~~A 459 (722)
.+ ....+++++++++|.++++++|+++++++|++++++. .+|+++ +|+||||+||+||+|+++|
T Consensus 364 ~~~~~~~~~~~~~~~~a~R~a~g~~L~~~~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~~~~~R~~d~GIaE~~mv~~A 443 (690)
T 3m49_A 364 EGWEQNLPTYELGSKAATRNSSGAVINAIAESVPSFFGGSADLAGSNKTYMNNEKDFTRDDYSGKNIWYGVREFAMGAAM 443 (690)
T ss_dssp TTGGGGCCCCCTTCEEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTSCBCBTTBTTCCEEECCSCHHHHHHHH
T ss_pred hhhhhhccccccccchHHHHHHHHHHHHHHhhCCCEEEEeCcccccCCccccccccchhhcCCCceEEcCchHHHHHHHH
Confidence 00 0123578899999999999999999999999877654 467765 5899999999999999999
Q ss_pred HHHhcC-CCeeEEEecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCc-cCCCCCCcCcHHHHHHhcCCCCcEEEeeCCHH
Q 004946 460 AGLACG-GLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDED 537 (722)
Q Consensus 460 aGlA~~-G~~p~~~t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~d~a~~~~iP~l~V~~Psd~~ 537 (722)
+|||+. |+|||++||..|..++..|| +++|++++||+++++++|+ +|+||+|||+++|+++||++|||+|++|+|++
T Consensus 444 ~GlA~~gG~~P~~~tf~~Fs~f~~~ai-r~~al~~lpVv~v~~~~gigvG~dG~THq~ied~a~lr~iPnl~V~~Pad~~ 522 (690)
T 3m49_A 444 NGIALHGGLKTYGGTFFVFSDYLRPAI-RLAALMQLPVTYVFTHDSIAVGEDGPTHEPIEQLAALRAMPNVSVIRPADGN 522 (690)
T ss_dssp HHHHHHSSCEEEEEEEGGGGGGGHHHH-HHHHHHTCCCEEEEECCSGGGCTTCGGGCCSSHHHHHHTSTTCEEECCSSHH
T ss_pred HHHHHcCCCEEEEEecHHHHHHHHHHH-HHHHhcCCCcEEEEECCCcCCCCCCCccCCHHHHHHHhcCCCCEEEeeCCHH
Confidence 999998 89999998866665555555 6799999999999999998 89999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhCCCCEEEEecCCCcccccCCCCC-CCCccccccEEEEEeCC----cEEEEEechhhHHHHHHHHHHHh
Q 004946 538 ELVDMVATVASIDDRPVCFRYPRGAIVRTDLPGYR-GIPIEEIGKGKVLVEGK----DVALLGYGAMVQNCLKARALLSK 612 (722)
Q Consensus 538 E~~~~l~~a~~~~~~Pv~ir~~r~~~~~~~~p~~~-~~~~~~igk~~vl~eG~----dv~lva~Gs~v~~aleAa~~L~~ 612 (722)
|++.++++|++..++|++||++|+..+........ .+.+ +.|+ +++++|+ |++||++|++++.|++|++.|++
T Consensus 523 E~~~~l~~Ai~~~~~Pv~ir~~R~~~p~~~~~~~~~~~~~-~~G~-~vlr~g~~g~~dvtiia~G~~v~~Al~Aa~~L~~ 600 (690)
T 3m49_A 523 ESVAAWRLALESTNKPTALVLTRQDLPTLEGAKDDTYEKV-AKGA-YVVSASKKETADVILLATGSEVSLAVEAQKALAV 600 (690)
T ss_dssp HHHHHHHHHHHCSSSCEEEECCSSEEECCHHHHTTHHHHH-HTSC-EEEECCSSSSCSEEEEECTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCEEEEeecccCCCCCcccccccccc-CCCe-EEEEecCCCCCCEEEEEechHHHHHHHHHHHHHh
Confidence 99999999998658999999999875421100000 1234 5565 6889985 99999999999999999999999
Q ss_pred cCCcEEEeecCccccchH---HHHHHHh-cCCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCC
Q 004946 613 LGIDVTVADARFCKPLDI---KLVRELC-QNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHAS 688 (722)
Q Consensus 613 ~Gi~v~Vidl~~lkPld~---e~i~~~~-~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~v~~ig~~d~f~~~g~ 688 (722)
+||+++|||++|++|||. +.+.+++ ++++.+|+||++...||. +++...+ ..+|+ |.|+.+|+
T Consensus 601 ~GI~~~Vid~~~i~p~D~~d~~~~~~v~~~~~~~~v~vEe~~~~G~~----~~~~~~~--------~~igi-d~Fg~sg~ 667 (690)
T 3m49_A 601 DGVDASVVSMPSMDRFEAQTAEYKESVLPKAVTKRFAIEMGATFGWH----RYVGLEG--------DVLGI-DTFGASAP 667 (690)
T ss_dssp TTCCEEEEECSCHHHHHTSCHHHHHHHSCTTCCCEEEECSSCCTTTH----HHHTTTC--------EEECC-CSCCCSSC
T ss_pred cCCCeEEEecccCCcCccccHHHHHHHhhccCCeEEEEECCchhhHH----HHhccCC--------CEEcc-CcCcCcCC
Confidence 999999999999999995 4555555 367889999999876665 4443322 35787 99999999
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHh
Q 004946 689 PTQQLALAGLTGHHIAATALSLL 711 (722)
Q Consensus 689 ~~~l~~~~gl~~~~I~~~i~~ll 711 (722)
.+++++++|||+++|+++|+++|
T Consensus 668 ~~~l~~~~Glt~e~I~~~i~~~l 690 (690)
T 3m49_A 668 GEKIMEEYGFTVENVVRKVKEML 690 (690)
T ss_dssp HHHHHHHTTCSHHHHHHHHHHHC
T ss_pred HHHHHHHHCcCHHHHHHHHHHhC
Confidence 99999999999999999998864
No 7
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=100.00 E-value=4.9e-96 Score=852.37 Aligned_cols=541 Identities=16% Similarity=0.185 Sum_probs=457.8
Q ss_pred HHHHHHHHHHHHHHHHHhHhc-CCCCCCCcchHHHHHHHHh---hccCC------CCcEEEecCCchH---HHHHHHhCc
Q 004946 96 IKELKQLAVEIRSELSSIVSK-TEKSLKSSLAAVELTVALH---HVFHA------PVDKILWDVGEQT---YAHKILTGR 162 (722)
Q Consensus 96 ~~~l~~la~eiR~~ii~~~~~-~gGh~~~slg~vel~~aL~---~vf~~------p~D~iv~d~GH~~---y~h~~ltGr 162 (722)
++.++++|++||..+++++++ ++||+|++||++|++++|| +.||+ ++||||||+||++ |+++.++|+
T Consensus 3 ~~~~~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~~~~~~~~p~~~~rDrfvls~GH~s~~lYa~l~l~G~ 82 (663)
T 3kom_A 3 LSIPREFSNAIRFLSIDATLKAKSGHPGMPMGMADIATVLWTKFLKHNPNNPHWINRDRFVLSNGHGSMLLYSLLHLTGY 82 (663)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHTCCCCTTCTTCTTSCEEEECSSSCHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhhheeeCCCCCCCCCCCeEEEeCCcccHHHHHHHHHhCC
Confidence 334678999999999999996 7999999999999999995 45764 6899999999999 999999999
Q ss_pred h---hhhhHHHhhCC-CCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCC----------CCeEEEEecCCCccc
Q 004946 163 R---SLIHTLRKKDG-ISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGK----------RECIVTVISNGTTMA 228 (722)
Q Consensus 163 ~---~~~~~~r~~gg-l~g~~~~~es~~d~~~~G~~G~~ls~A~G~A~A~~l~~~----------~~~Vv~viGDGa~~~ 228 (722)
+ +++.++||+|+ ++|||++...++..+++|++|+++|+|+|+|+|.++++. +++|||++|||++++
T Consensus 83 ~~~~~~l~~~r~~~s~~~ghp~~~~~~gve~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~d~~v~~i~GDG~l~e 162 (663)
T 3kom_A 83 DLSIEDIKNFRQLHSKTPGHPEYGYTPGVETTTGPLGQGVANAVGMALGEKLLSDRYNTPDLKVIDHHTYVFLGDGCLME 162 (663)
T ss_dssp SCCHHHHTTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCSCCCCEEEEECHHHHHS
T ss_pred CCCHHHHHhhccCCCCCCCCCCCCCCCCcccCCcchhhHHHHHHHHHHhHHhhcccccccccccCCCeEEEEECchhhhh
Confidence 4 78999999998 569999888899999999999999999999999997764 799999999999999
Q ss_pred chHHHHHHHhhhcCC-CEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHH
Q 004946 229 GQAYEAMSNAGYLDS-NMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAA 307 (722)
Q Consensus 229 G~~~EAln~A~~~~~-plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~ 307 (722)
|++||||++|+++++ |+|+|+|||+++ ++.+++..
T Consensus 163 G~~~Eal~~A~~~~L~~livi~dnN~~~--------i~~~~~~~------------------------------------ 198 (663)
T 3kom_A 163 GVSHEACSLAGTLGLNKLVAFWDDNNIS--------IDGDTKGW------------------------------------ 198 (663)
T ss_dssp HHHHHHHHHHHHHTCTTEEEEEEECC-------------CGGGT------------------------------------
T ss_pred chHHHHHHHHHHhCCCeEEEEEECCCcc--------cccchhhh------------------------------------
Confidence 999999999999996 599999999983 23333211
Q ss_pred HHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEEEEEeeccCCCcccccccchhhccCC
Q 004946 308 KVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEG 387 (722)
Q Consensus 308 ~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kG~G~~~ae~~~~~~~~H~~ 387 (722)
..++...+|++|||++++++||||+++|.++|+++++. .++|++||++|.||+|++++|+ ..+|||.
T Consensus 199 ---------~~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~A~~~-~~~P~lI~~~T~kg~G~~~~e~---~~~~Hg~ 265 (663)
T 3kom_A 199 ---------FSDNTPERFRAYGWHVIENVDGHDFVAIEKAINEAHSQ-QQKPTLICCKTVIGFGSPEKAG---TASVHGS 265 (663)
T ss_dssp ---------CCCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHHC-SSSCEEEEEECCTTTTCTTTTT---CSSTTSS
T ss_pred ---------cchhHHHHHHHCCCeEEEEEcCCCHHHHHHHHHHHHhc-CCCCEEEEEecccccccCCCCC---CccccCC
Confidence 11234678999999999899999999999999999873 3799999999999999999875 7899998
Q ss_pred CC--------------------CCC-----------CCC----------------------------CC-----------
Q 004946 388 AS--------------------DSN-----------SLP----------------------------FG----------- 397 (722)
Q Consensus 388 ~~--------------------~~t-----------g~~----------------------------~~----------- 397 (722)
++ ..+ |.. .+
T Consensus 266 ~l~~e~~~~~~~~l~~~~~pf~~~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~ 345 (663)
T 3kom_A 266 PLSDQERASAAKELNWDYQAFEIPQDVYKYWDAREKGQALEANWQGQRNLFKDSPKFDEFERVLSKELPVGLESAINDYI 345 (663)
T ss_dssp CCCHHHHHHHHHHTTCCCCTTCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHTCCCTTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCCccCChhHHHHHHHHhhcchhhHHHHHHHHHhhcchHHHHHHHHhccCCCcchhhhhhhhh
Confidence 63 000 000 00
Q ss_pred ------CCccchHHHHHHHHHHHHhcCCCEEEEecCCCCccch-----HHHH-HhCCCceeecccchHHHHHHHHHHhcC
Q 004946 398 ------NYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL-----QLFQ-EKFPERYFDVGMAEQHAVTFSAGLACG 465 (722)
Q Consensus 398 ------~~~~s~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~l-----~~f~-~~~p~R~~d~GIaE~~av~~AaGlA~~ 465 (722)
.+..+++++++++|.++++++|+++++++|++++++. .+|+ ++||+||||+||+|++|+++|+|||+.
T Consensus 346 ~~~~~~~~~~a~r~a~~~aL~~~~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~~~p~R~~d~GIaE~~~v~~a~GlA~~ 425 (663)
T 3kom_A 346 ASQLSNPVKVATRKASQMVLEVLCKNMPEMFGGSADLTGSNNTNWSGSVWLNNTQEGANYLSYGVREFGMAAIMNGLSLY 425 (663)
T ss_dssp HHHHHSCCCEEHHHHHHHHHHHHHHHCTTEEEEECCC--CCSCCCTTCCBTTTCSTTCCEEECCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCcchhHHHHHHHHHHHHHhhCCCEEEEecccCCCCCcccccccccccccCCCCeEecCccHHHHHHHHHHHHHc
Confidence 1234678889999999999999999999999877654 2574 899999999999999999999999998
Q ss_pred -CCeeEEEecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCc-cCCCCCCcCcHHHHHHhcCCCCcEEEeeCCHHHHHHHH
Q 004946 466 -GLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMV 543 (722)
Q Consensus 466 -G~~p~~~t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l 543 (722)
|+|||++||++|++|+++|| +++|++++||++++++.|+ +|+||+|||+++|+++||++|||+|++|+|++|++.++
T Consensus 426 gG~~P~~~tf~~F~~~~~~~i-r~~a~~~lpvv~~~t~~g~g~G~dG~THq~~ed~a~lr~iPnl~V~~Pad~~e~~~~l 504 (663)
T 3kom_A 426 GGIKPYGGTFLVFSDYSRNAI-RMSALMKQPVVHVMSHDSIGLGEDGPTHQPIEHVPSLRLIPNLSVWRPADTIETMIAW 504 (663)
T ss_dssp SSCEEEEEEEGGGHHHHHHHH-HHHHHTTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCCSHHHHHHHH
T ss_pred CCCEEEEEehHHHHHHHHHHH-HHHHhcCCCEEEEEeCCccccCCCCCCcCCHHHHHHHhcCCCcEEEeeCCHHHHHHHH
Confidence 99999999999999999997 6799999999999977776 89999999999999999999999999999999999999
Q ss_pred HHHhhhCCCCEEEEecCCCcccccCCCCCC--CCccccccEEEEEe--CCcEEEEEechhhHHHHHHHHHHHhcCCcEEE
Q 004946 544 ATVASIDDRPVCFRYPRGAIVRTDLPGYRG--IPIEEIGKGKVLVE--GKDVALLGYGAMVQNCLKARALLSKLGIDVTV 619 (722)
Q Consensus 544 ~~a~~~~~~Pv~ir~~r~~~~~~~~p~~~~--~~~~~igk~~vl~e--G~dv~lva~Gs~v~~aleAa~~L~~~Gi~v~V 619 (722)
++|++..++|++||++|+..+. ++.... ..+ +.| .+++++ |+||+||++|++++.|++|++.|+++||+++|
T Consensus 505 ~~A~~~~~~Pv~ir~~r~~~p~--~~~~~~~~~~~-~~G-~~vl~~~~g~dvtiia~G~~v~~al~Aa~~L~~~Gi~~~V 580 (663)
T 3kom_A 505 KEAVKSKDTPSVMVLTRQNLMP--VVQTQHQVANI-ARG-GYLVKDNPDAKLTIVATGSEVELAVKVANEFEKKGIKLNV 580 (663)
T ss_dssp HHHHHCSSCCEEEECCSSEECC--CCCCHHHHHHH-TTT-CEEEECCTTCSCEEEECTTHHHHHHHHHHHHHHTTCCCEE
T ss_pred HHHHHhCCCCEEEEccCccCCC--cCccccchhcc-cCc-eEEEEecCCCCEEEEEecHHHHHHHHHHHHHHhcCCCeEE
Confidence 9999767899999999987432 111100 122 334 367787 79999999999999999999999999999999
Q ss_pred eecCccccchHHH---HHHHhcCCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHc
Q 004946 620 ADARFCKPLDIKL---VRELCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALA 696 (722)
Q Consensus 620 idl~~lkPld~e~---i~~~~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~v~~ig~~d~f~~~g~~~~l~~~~ 696 (722)
||++|++|||++. +.++++....+|++|++...||.+.+. | ..-..+|+ |.|+.+|+.++++++|
T Consensus 581 i~~~si~p~D~~~~~~~~~vl~~~~~~v~vE~~~~~g~~~~~g------G-----~~~~~igi-d~Fg~sg~~~~l~~~~ 648 (663)
T 3kom_A 581 ASIPCVEVFATQAHEYKKTVIKDDIPAVFVEMAQPDMWYKYMP------K-----AGGEVKGI-YSFGESAPAEDLFKRF 648 (663)
T ss_dssp EECSCHHHHHTSCHHHHHHHSCTTSCEEEECSSCCGGGGGGCC------T-----TCEEEECC-CSCCCSSCHHHHHHHH
T ss_pred EEcCcCCcccccHHHHHHHhcCCCCeEEEEecCCcccHHHHhc------c-----cCCcEEEe-cCCcCCCCHHHHHHHH
Confidence 9999999999977 344555656789999998878875431 1 23367898 9999999999999999
Q ss_pred CCCHHHHHHHHHHH
Q 004946 697 GLTGHHIAATALSL 710 (722)
Q Consensus 697 gl~~~~I~~~i~~l 710 (722)
|||+++|+++++++
T Consensus 649 Glt~e~I~~~~~~~ 662 (663)
T 3kom_A 649 GFTVENISNIVAKY 662 (663)
T ss_dssp TCSHHHHHHHHTTT
T ss_pred CcCHHHHHHHHHhh
Confidence 99999999999765
No 8
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=100.00 E-value=3.5e-95 Score=850.75 Aligned_cols=546 Identities=21% Similarity=0.241 Sum_probs=472.6
Q ss_pred chhccCCCHHHHHHHHHHHHHHHHHhHhc-CCCCCCCcchHHHHHHHHh---hccC------CCCcEEEecCCchH---H
Q 004946 88 PLRLKSLTIKELKQLAVEIRSELSSIVSK-TEKSLKSSLAAVELTVALH---HVFH------APVDKILWDVGEQT---Y 154 (722)
Q Consensus 88 p~~~~~l~~~~l~~la~eiR~~ii~~~~~-~gGh~~~slg~vel~~aL~---~vf~------~p~D~iv~d~GH~~---y 154 (722)
|-+.|+|+.++|+++|++||..++.++.+ ++||+|+++|++|++++|| ++|| .++|+||||+||++ |
T Consensus 5 ~~~~~~l~~~~l~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~~~~~p~~p~~~~rDr~vls~GH~~~~lY 84 (675)
T 1itz_A 5 TLQGKAATGELLEKSVNTIRFLAIDAVEKANSGHPGLPMGCAPMGHVLYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQY 84 (675)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHTCCCCTTCTTCTTCCEEEESSGGGHHHHH
T ss_pred hhccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCccCccHhHHHHHHHHHHHHhcCCcCCCCCCCCCeEEEcCcchHHHHH
Confidence 45679999999999999999999999997 7999999999999999999 4676 35899999999999 9
Q ss_pred HHHHHhCch----hhhhHHHhhCCC-CCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcC----------CCCeEEE
Q 004946 155 AHKILTGRR----SLIHTLRKKDGI-SGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKG----------KRECIVT 219 (722)
Q Consensus 155 ~h~~ltGr~----~~~~~~r~~ggl-~g~~~~~es~~d~~~~G~~G~~ls~A~G~A~A~~l~~----------~~~~Vv~ 219 (722)
+|++++|+. ++|.++||+|+. +|||++.+++++.+++|++|+++|+|+|+|+|.++++ ++++|||
T Consensus 85 a~l~l~G~~~~~~~~l~~~r~~~~~~~ghp~~~~~~~~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~ 164 (675)
T 1itz_A 85 ALLHLAGYDSVKEEDLKQFRQWGSRTPGHPENFETPGVEVTTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDHYTYV 164 (675)
T ss_dssp HHHHHHTCTTCCHHHHTTTTSTTCSSCSSCCTTTCTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEE
T ss_pred HHHHHcCCCCCCHHHHHhcccCCCCCCCCCCCCCCCCeeECCccHHhHHHHHHHHHHHhhhhcccccccccCCCCCEEEE
Confidence 999999996 789999999985 8999998999999999999999999999999998776 7899999
Q ss_pred EecCCCcccchHHHHHHHhhhcC-CCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhHHHHHHHHHhhhhhhc
Q 004946 220 VISNGTTMAGQAYEAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRI 298 (722)
Q Consensus 220 viGDGa~~~G~~~EAln~A~~~~-~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~ 298 (722)
++|||++++|++||||++|++++ .|+|+|+|||+++ ++.+++..
T Consensus 165 i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~--------i~~~~~~~--------------------------- 209 (675)
T 1itz_A 165 ILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNHIS--------IDGDTEIA--------------------------- 209 (675)
T ss_dssp EECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEE--------TTEEGGGT---------------------------
T ss_pred EECHhHhchhHHHHHHHHHHHhCCCcEEEEEECCCcc--------CCCChhhh---------------------------
Confidence 99999999999999999999999 4899999999983 23333210
Q ss_pred CccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCC-CHHHHHHHHHHHHhcCCCCCEEEEEEeeccCCCccccc
Q 004946 299 GRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGH-NIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQK 377 (722)
Q Consensus 299 g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGh-d~~~l~~al~~a~~~~~~~P~lI~v~T~kG~G~~~ae~ 377 (722)
+..+...+|++|||++++++||| |+++|.++++++++. .++|++||++|.||+|++++|.
T Consensus 210 ------------------~~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~al~~a~~~-~~~P~lI~~~T~kg~G~~~~~~ 270 (675)
T 1itz_A 210 ------------------FTEDVSTRFEALGWHTIWVKNGNTGYDDIRAAIKEAKAV-TDKPTLIKVTTTIGFGSPNKAN 270 (675)
T ss_dssp ------------------CCSCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHHC-CSSCEEEEEECCTTTTCTTTTT
T ss_pred ------------------cChhHHHHHHhCCCEEEEEecCCCCHHHHHHHHHHHHHC-CCCeEEEEEeeecccCcccccC
Confidence 01233568999999999899999 999999999999873 4789999999999999998875
Q ss_pred ccchhhccCCCC--------------------CCCC------------CC------------------------------
Q 004946 378 SEAIEKQQEGAS--------------------DSNS------------LP------------------------------ 395 (722)
Q Consensus 378 ~~~~~~~H~~~~--------------------~~tg------------~~------------------------------ 395 (722)
+.+||+.++ ..++ ..
T Consensus 271 ---~~~~H~~~~~~e~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 347 (675)
T 1itz_A 271 ---SYSVHGSALGAKEVEATRQNLGWPYDTFFVPEDVKSHWSRHTPEGAALEADWNAKFAEYEKKYADDAATLKSIITGE 347 (675)
T ss_dssp ---SGGGTSSCCCHHHHHHHHHHHTCCCCTTCCCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCC
T ss_pred ---cccccCCCCCHHHHHHHHHHcCCCcccccCChhHHHHHHHHHhhhhhhHHHHHHHHHHhhhhChHHHHHHHHHhccc
Confidence 789999853 0000 00
Q ss_pred -------------CCCCccchHHHHHHHHHHHHhcCCCEEEEecCCCCccch-----HHHHH-hCCCceeecccchHHHH
Q 004946 396 -------------FGNYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL-----QLFQE-KFPERYFDVGMAEQHAV 456 (722)
Q Consensus 396 -------------~~~~~~s~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~l-----~~f~~-~~p~R~~d~GIaE~~av 456 (722)
.+.+..+++++++++|.++++++|+++++++|+++++++ ..|++ +||+||||+||+|++|+
T Consensus 348 ~p~~~~~~~~~~~~~~~~~a~r~a~~~~L~~i~~~~p~v~~~~aDl~~s~~~~~~g~~~f~~~~~~~R~id~gIaE~~~v 427 (675)
T 1itz_A 348 LPTGWVDALPKYTPESPGDATRNLSQQCLNALANVVPGLIGGSADLASSNMTLLKMFGDFQKDTAEERNVRFGVREHGMG 427 (675)
T ss_dssp CCTTGGGGSCCCCTTSCCBCHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTCCBCCTTCTTCCBCCCCSCHHHHH
T ss_pred CCchhhhhhhhhccCCcchHHHHHHHHHHHHHHHhCCCEEEEeccccccccccccccccccccCCCCCeEeecccHHHHH
Confidence 001335788999999999999999999999999877654 34886 99999999999999999
Q ss_pred HHHHHHhcCC--CeeEEEecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCc-cCCCCCCcCcHHHHHHhcCCCCcEEEee
Q 004946 457 TFSAGLACGG--LKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAP 533 (722)
Q Consensus 457 ~~AaGlA~~G--~~p~~~t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~d~a~~~~iP~l~V~~P 533 (722)
++|+|||+.| +|||++||++|+.++++|| +++|++++||++++++.|+ +|+||+|||+.+|+++++++|||+|++|
T Consensus 428 ~~a~GlA~~G~~~~P~~~t~~~F~~~~~~~i-r~~a~~~lpvv~~~t~~g~g~G~dG~tHq~~edla~lr~iP~l~V~~P 506 (675)
T 1itz_A 428 AICNGIALHSPGFVPYCATFFVFTDYMRGAM-RISALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLVSFRAMPNILMLRP 506 (675)
T ss_dssp HHHHHHHTTCTTCEEEEEEEGGGHHHHHHHH-HHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHSSSSCEEECC
T ss_pred HHHHHHHhcCCCCEEEEEEHHHHHHHHHHHH-HHHHhcCCCEEEEEECCccccCCCCCCcCcHHHHHHhccCCCeEEEEC
Confidence 9999999999 9999999999999999997 6689999999999977776 7899999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhhCCCCEEEEecCCCcccccCCCCCCC-CccccccEEEEEe---C--CcEEEEEechhhHHHHHHH
Q 004946 534 SDEDELVDMVATVASIDDRPVCFRYPRGAIVRTDLPGYRGI-PIEEIGKGKVLVE---G--KDVALLGYGAMVQNCLKAR 607 (722)
Q Consensus 534 sd~~E~~~~l~~a~~~~~~Pv~ir~~r~~~~~~~~p~~~~~-~~~~igk~~vl~e---G--~dv~lva~Gs~v~~aleAa 607 (722)
+|++|++.++++|++..++|++||++|+..+. ++.. .+ .+ ++| ++++++ | +||+||++|++++.|++|+
T Consensus 507 ad~~e~~~~l~~a~~~~~~Pv~i~~~r~~~p~--~~~~-~~~~~-~~G-a~vl~~~~~G~~~dv~iva~G~~v~~al~Aa 581 (675)
T 1itz_A 507 ADGNETAGAYKVAVLNRKRPSILALSRQKLPH--LPGT-SIEGV-EKG-GYTISDNSTGNKPDLIVMGTGSELEIAAKAA 581 (675)
T ss_dssp CSHHHHHHHHHHHHHCTTSCEEEEECSSCBCC--CTTC-CHHHH-TTS-SEEEEECCSTTCCSEEEEECGGGHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCcEEEEecCCCCCC--CCCc-ccccc-ccC-CEEEecccCCCCCCEEEEEECHHHHHHHHHH
Confidence 99999999999999855899999999987543 2221 22 35 667 578888 7 8999999999999999999
Q ss_pred HHHHhcCCcEEEeecCccccchHHH---HHHHhcCC-CeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCcc
Q 004946 608 ALLSKLGIDVTVADARFCKPLDIKL---VRELCQNH-TFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNY 683 (722)
Q Consensus 608 ~~L~~~Gi~v~Vidl~~lkPld~e~---i~~~~~~~-~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~v~~ig~~d~f 683 (722)
+.|+++||+++|||++|++|||++. +.++++++ +++||||++..+||++.+ . .+..++|+ |.|
T Consensus 582 ~~L~~~Gi~v~Vv~~~~~~pld~~~~~~~~~v~~~~~~~vv~vE~~~~~G~~~~~----~--------~~~~~ig~-d~f 648 (675)
T 1itz_A 582 DELRKEGKTVRVVSFVSWELFDEQSDEYKESVLPAAVTARISIEAGSTLGWQKYV----G--------AQGKAIGI-DKF 648 (675)
T ss_dssp HHHHHTTCCEEEEECSCHHHHHTSCHHHHHHHSCTTCCCEEEECSSCCTTTHHHH----C--------SSCEEECC-CSC
T ss_pred HHHHhcCCcEEEEEeccCcccccchHHHHHHHhccCCceEEEEECCccccHHHhc----C--------CCceEEEe-CCC
Confidence 9999999999999999999999874 67777764 789999999888998643 1 24467999 999
Q ss_pred ccCCCHHHHHHHcCCCHHHHHHHHHH
Q 004946 684 IEHASPTQQLALAGLTGHHIAATALS 709 (722)
Q Consensus 684 ~~~g~~~~l~~~~gl~~~~I~~~i~~ 709 (722)
+.+|+.+++++++|+|+++|+++|++
T Consensus 649 g~sg~~~~l~~~~gl~~~~I~~~i~~ 674 (675)
T 1itz_A 649 GASAPAGTIYKEYGITVESIIAAAKS 674 (675)
T ss_dssp CCSSCHHHHHHHHTCSHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHh
Confidence 99999999999999999999999864
No 9
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=100.00 E-value=2.7e-95 Score=848.94 Aligned_cols=536 Identities=19% Similarity=0.227 Sum_probs=441.8
Q ss_pred HHHHHHHHHHHHHHhHhc-CCCCCCCcchHHHHHHHHh---hccCC------CCcEEEecCCchH---HHHHHHhCch--
Q 004946 99 LKQLAVEIRSELSSIVSK-TEKSLKSSLAAVELTVALH---HVFHA------PVDKILWDVGEQT---YAHKILTGRR-- 163 (722)
Q Consensus 99 l~~la~eiR~~ii~~~~~-~gGh~~~slg~vel~~aL~---~vf~~------p~D~iv~d~GH~~---y~h~~ltGr~-- 163 (722)
.+++|++||..+++++.+ ++||+|++||++|++++|| +.||+ ++||||||+||++ |+|++++|++
T Consensus 45 ~~~~a~~iR~~~i~~v~~a~~GH~g~~l~~aei~~~L~~~~~~~~~~~p~~~~rDrfvls~GH~s~~lYa~l~l~G~~~~ 124 (711)
T 3uk1_A 45 TTLMANAIRALAMDAVQQANSGHPGMPMGMAEIGVALWSRHLKHNPTNPHWADRDRFVLSNGHGSMLLYSLLHLTGYDLP 124 (711)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSCCHHHHHTHHHHHHHHHHTCCCCTTCTTCTTCCEEEECSGGGHHHHHHHHHHHTCSCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHHhhhEeeCCCCCCCCCCCeEEEeCCcccHHHHHHHHHhCCCCC
Confidence 456899999999999996 7999999999999999996 45764 5899999999999 9999999994
Q ss_pred -hhhhHHHhhCC-CCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCC----------CCeEEEEecCCCcccchH
Q 004946 164 -SLIHTLRKKDG-ISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGK----------RECIVTVISNGTTMAGQA 231 (722)
Q Consensus 164 -~~~~~~r~~gg-l~g~~~~~es~~d~~~~G~~G~~ls~A~G~A~A~~l~~~----------~~~Vv~viGDGa~~~G~~ 231 (722)
+++.++||+++ ++|||.+...++..+++|++|+++|+|+|+|+|.++++. +++|||++|||++++|++
T Consensus 125 ~~~l~~~r~~~s~~~ghp~~~~~~gve~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~vv~i~GDG~l~eG~~ 204 (711)
T 3uk1_A 125 IEELKNFRQLHSKTPGHPEYGITPGVETTTGPLGQGLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGDGCLMEGIS 204 (711)
T ss_dssp HHHHHTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHH
T ss_pred HHHHHhhccccCCCCCCCCCCCCCCcccCccchhhHHHHHHHHHHHHHhhcccccccccccCCCeEEEEECCcchhhccH
Confidence 88999999998 579998877788889999999999999999999997753 789999999999999999
Q ss_pred HHHHHHhhhcCCC-EEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHH
Q 004946 232 YEAMSNAGYLDSN-MIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVD 310 (722)
Q Consensus 232 ~EAln~A~~~~~p-livIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~ 310 (722)
||||++|+++++| +|+|+|||+++ ++.+++..
T Consensus 205 ~Eal~~A~~~~L~~livI~dnN~~~--------i~~~~~~~--------------------------------------- 237 (711)
T 3uk1_A 205 HEACSLAGTLKLNKLIALYDDNGIS--------IDGDVVNW--------------------------------------- 237 (711)
T ss_dssp HHHHHHHHHTTCTTEEEEEEECSEE--------TTEEGGGT---------------------------------------
T ss_pred HHHHHHHHHhCCCcEEEEEECCCcc--------cccchhhh---------------------------------------
Confidence 9999999999965 99999999983 23333311
Q ss_pred HHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEEEEEeeccCCCcccccccchhhccCCCC-
Q 004946 311 EYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGAS- 389 (722)
Q Consensus 311 ~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kG~G~~~ae~~~~~~~~H~~~~- 389 (722)
..++...+|++|||+++.++||||+++|.++|+++++ .++|++||++|.||+|++++|+ ..+|||.++
T Consensus 238 ------~~~d~~~~~~a~G~~~~~~vdG~d~~~l~~Al~~A~~--~~~P~lI~v~T~kG~G~~~~e~---~~~~Hg~~l~ 306 (711)
T 3uk1_A 238 ------FHDDTPKRFEAYGWNVIPNVNGHDVDAIDAAIAKAKR--SDKPSLICCKTRIGNGAATKAG---GHDVHGAPLG 306 (711)
T ss_dssp ------CCCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHTT--CSSCEEEEEEC-----------------------C
T ss_pred ------cCCCHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHh--CCCCEEEEEccccccCCCCCCC---cccccCCCCC
Confidence 0123467899999999977999999999999999987 5899999999999999987664 789999863
Q ss_pred ----------------C---CC-----------CCC------------------------------CC------------
Q 004946 390 ----------------D---SN-----------SLP------------------------------FG------------ 397 (722)
Q Consensus 390 ----------------~---~t-----------g~~------------------------------~~------------ 397 (722)
+ .+ |.. .+
T Consensus 307 ~e~~~~~~~~l~~~~~pF~~~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~~~p~~a~~~~~~~~~~~p~~~~~~~~~~~~ 386 (711)
T 3uk1_A 307 ADEIAKTREALGWTWAPFVIPQEVYAAWDAKEAGKRSEDDWNAAFAQYRAKYPAEAAEFERRMAGTLPADWAAKAAAIVA 386 (711)
T ss_dssp HHHHHHHHHHHTCCCCTTCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCccCChHHHHHHHHHhccchhHHHHHHHHHHHHhhChhhHHHHHHhhccCCCchHHHHhhHhhh
Confidence 0 00 100 00
Q ss_pred -----CCccchHHHHHHHHHHHHhcCCCEEEEecCCCCccch-----HHHHHh---CC---CceeecccchHHHHHHHHH
Q 004946 398 -----NYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL-----QLFQEK---FP---ERYFDVGMAEQHAVTFSAG 461 (722)
Q Consensus 398 -----~~~~s~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~l-----~~f~~~---~p---~R~~d~GIaE~~av~~AaG 461 (722)
.+..+++++++++|.++++++|+++++++|+++++++ ..|+++ || +||||+||+|++|+++|+|
T Consensus 387 ~~~~~~~~~atR~A~~~~L~~l~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~~~~~p~~~~R~~d~GIaE~~mv~~AaG 466 (711)
T 3uk1_A 387 GANERGETVATRKASQQTIEGLAAVLPELLGGSADLTGSNLTNWKASKAVRANADGPGVQWGNHINYGVREFGMSAAING 466 (711)
T ss_dssp HHHHHCCCEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTCCBCEECSSSSSEECCSEEECCSCHHHHHHHHHH
T ss_pred hhhccccchhHHHHHHHHHHHHHhhCCCEEEEeccccCcCCcccccchhhhhhhccCCCCCCcEEEeCccHHHHHHHHHH
Confidence 1223567888899999999999999999999876554 478888 99 9999999999999999999
Q ss_pred Hhc-CCCeeEEEecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCc-cCCCCCCcCcHHHHHHhcCCCCcEEEeeCCHHHH
Q 004946 462 LAC-GGLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDEL 539 (722)
Q Consensus 462 lA~-~G~~p~~~t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~d~a~~~~iP~l~V~~Psd~~E~ 539 (722)
||+ .|++||++||++|++|+++|| +++|++++||++++++.|+ +|+||+|||+++|+++||++|||+|++|+|++|+
T Consensus 467 lA~~~G~~Pv~~~f~~F~~~~~~~i-r~~a~~~lpv~~v~thdg~gvG~dG~THq~~ed~a~lr~iPnl~V~~Pad~~E~ 545 (711)
T 3uk1_A 467 LVLHGGYKPFGGTFLTFSDYSRNAL-RVAALMKVPSIFVFTHDSIGLGEDGPTHQSVEHVASLRLIPNLDVWRPADTVET 545 (711)
T ss_dssp HHHHSSCEEEEEEEGGGHHHHHHHH-HHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCSSHHHH
T ss_pred HHHcCCCEEEEEEhHHHHHHHHHHH-HHhhhcCCCEEEEEECCCcCcCCCCCccCChhHHHHHhcCCCCEEEecCCHHHH
Confidence 999 599999999999999999987 5689999999999988777 8999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCCEEEEecCCCcccccCCCCCC--CCccccccEEEEEe--C----CcEEEEEechhhHHHHHHHHHHH
Q 004946 540 VDMVATVASIDDRPVCFRYPRGAIVRTDLPGYRG--IPIEEIGKGKVLVE--G----KDVALLGYGAMVQNCLKARALLS 611 (722)
Q Consensus 540 ~~~l~~a~~~~~~Pv~ir~~r~~~~~~~~p~~~~--~~~~~igk~~vl~e--G----~dv~lva~Gs~v~~aleAa~~L~ 611 (722)
+.++++|++ .++|++||++|+..+. ++.... +.+ +.|+ +++++ | +||+||++|++++.|++|++.|+
T Consensus 546 ~~~l~~Ai~-~~~Pv~ir~~r~~~p~--~~~~~~~~~~i-~~G~-~vl~~~~G~~~~~dvtiia~G~~v~~al~Aa~~L~ 620 (711)
T 3uk1_A 546 AVAWTYAVA-HQHPSCLIFSRQNLAF--NARTDAQLANV-EKGG-YVLRDWDEEIVARKIILIATGSEVELAMKAVEPLA 620 (711)
T ss_dssp HHHHHHHHH-SSSCEEEECCSSEECC--CCCCHHHHHHG-GGSS-EEEECCCSSCCSEEEEEEECTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-cCCCEEEEeeCCCCCC--CCCcccccccc-CCCe-EEEEecCCCCCCCCEEEEEecHHHHHHHHHHHHHH
Confidence 999999998 7899999999987543 121100 234 4555 46774 7 79999999999999999999999
Q ss_pred hcCCcEEEeecCccccchHHH--HHHHh-cCCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCC
Q 004946 612 KLGIDVTVADARFCKPLDIKL--VRELC-QNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHAS 688 (722)
Q Consensus 612 ~~Gi~v~Vidl~~lkPld~e~--i~~~~-~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~v~~ig~~d~f~~~g~ 688 (722)
++||+++|||++|++|||++. +++.+ +....+|++|++..+||++.+ . .+.+++|+ |+|+.+|+
T Consensus 621 ~~GI~~~Vid~~si~plD~~~~~~~~sv~~~~~~~V~vE~~~~~g~~~~~----g--------~~~~~iGi-d~Fg~sg~ 687 (711)
T 3uk1_A 621 QQGIAARVVSMPSSDVFDRQDAEYRERVLPHGVRRVAIEAGVTDFWRKYV----G--------LEGGVVGI-DTFGESAP 687 (711)
T ss_dssp HTTEEEEEEECSCHHHHHTSCHHHHHHHSCTTSCEEEECSSCSGGGHHHH----T--------TTSEEECC-CSCCCSSC
T ss_pred HcCCCeEEEecCcCCccchhHHHHHHHhhccCCeEEEEeCCccccHHHHh----C--------CCceEEEe-CCCcCcCC
Confidence 999999999999999999875 34444 444469999999888887554 1 12357898 99999999
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHh
Q 004946 689 PTQQLALAGLTGHHIAATALSLL 711 (722)
Q Consensus 689 ~~~l~~~~gl~~~~I~~~i~~ll 711 (722)
.++++++||||+++|++++++++
T Consensus 688 ~~~L~~~~Glt~e~Iv~~~~~~l 710 (711)
T 3uk1_A 688 AGVLFKHFGFTVEHVIETAKAVL 710 (711)
T ss_dssp HHHHHHHTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHh
Confidence 99999999999999999999876
No 10
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=100.00 E-value=3.5e-93 Score=831.45 Aligned_cols=532 Identities=20% Similarity=0.215 Sum_probs=461.8
Q ss_pred HHHHHHHHHHHHHhHhc-CCCCCCCcchHHHHHHHHh---hccC------CCCcEEEecCCchH---HHHHHHhCc---h
Q 004946 100 KQLAVEIRSELSSIVSK-TEKSLKSSLAAVELTVALH---HVFH------APVDKILWDVGEQT---YAHKILTGR---R 163 (722)
Q Consensus 100 ~~la~eiR~~ii~~~~~-~gGh~~~slg~vel~~aL~---~vf~------~p~D~iv~d~GH~~---y~h~~ltGr---~ 163 (722)
+++|++||..++.++.+ ++||+|+++|++|++++|| ++|| .++|+||||+||++ |+|++++|+ +
T Consensus 9 ~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~~~~~p~~p~~~~rDr~vls~GH~~~~lYa~l~l~G~~~~~ 88 (651)
T 2e6k_A 9 TLSVNAIRFLAIDAVEKARSGHPGMPMGMAPLAYLLFREVMRHNPLDPDWPDRDRFVLSAGHGSMLLYAVLHLTGYDLPL 88 (651)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHTTCCCCTTCTTCTTSCEEEESSGGGHHHHHHHHHHTTCSCCH
T ss_pred HHHHHHHHHHHHHHHHHcCCCccCcchhHHHHHHHHHHHHhcCCccCCCCCCCCeEEEeCcchhHHHHHHHHHhCCCCCH
Confidence 35899999999999997 8999999999999999999 3566 35899999999999 999999999 8
Q ss_pred hhhhHHHhhCCC-CCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcC----------CCCeEEEEecCCCcccchHH
Q 004946 164 SLIHTLRKKDGI-SGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKG----------KRECIVTVISNGTTMAGQAY 232 (722)
Q Consensus 164 ~~~~~~r~~ggl-~g~~~~~es~~d~~~~G~~G~~ls~A~G~A~A~~l~~----------~~~~Vv~viGDGa~~~G~~~ 232 (722)
++|.++||+++. +|||++.+++++.+++|++|+++|+|+|+|+|.++++ .+++|||++|||++++|++|
T Consensus 89 ~~l~~~r~~~~~~~ghp~~~~~~g~~~~~G~lG~gl~~AvG~A~A~~~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~ 168 (651)
T 2e6k_A 89 EELKSFRQWGSKTPGHPERGHTPGVEVTTGPLGQGISTAVGLALAERKLAAEFNRPGHVVVDHYTYVLASDGDLMEGVSG 168 (651)
T ss_dssp HHHTTTTSTTCSCCSSCCBTTBTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHH
T ss_pred HHHHHhhccCCCCCCCCCCCCCCCeeeccccccchHHHHHHHHHHHHhhcccccccccCCCCCEEEEEEChhhhchhHHH
Confidence 899999999985 8999998899999999999999999999999998765 68999999999999999999
Q ss_pred HHHHHhhhcCCC-EEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHH
Q 004946 233 EAMSNAGYLDSN-MIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDE 311 (722)
Q Consensus 233 EAln~A~~~~~p-livIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~ 311 (722)
|||++|+++++| +++|+|||+++ ++.+++..
T Consensus 169 Eal~~A~~~~L~~li~i~~nN~~~--------i~~~~~~~---------------------------------------- 200 (651)
T 2e6k_A 169 EAASLAGHWGLSKLIVFWDDNRIS--------IDGPTDLA---------------------------------------- 200 (651)
T ss_dssp HHHHHHHHTTCTTEEEEEEECCEE--------TTEEGGGT----------------------------------------
T ss_pred HHHHHHHHcCCCeEEEEEECCCcc--------cccccccc----------------------------------------
Confidence 999999999955 99999999983 22232210
Q ss_pred HhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEEEEEeeccCCCcccccccchhhccCCCC--
Q 004946 312 YARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGAS-- 389 (722)
Q Consensus 312 ~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kG~G~~~ae~~~~~~~~H~~~~-- 389 (722)
+..+...+|++|||++++++||||+++|.++++++++ .++|++||++|.||+|++ .+ ++.+||+.+.
T Consensus 201 -----~~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~--~~~P~lI~~~t~kg~G~~-~~---~~~~~H~~~~~~ 269 (651)
T 2e6k_A 201 -----FTEDVLARYRAYGWQTLRVEDVNDLEALRKAIKLAKL--DERPTLIAVRSHIGFGSP-KQ---DSAKAHGEPLGP 269 (651)
T ss_dssp -----CCSCHHHHHHHTTCEEEEESCTTCHHHHHHHHHHHHH--SSSCEEEEEECCTTTTST-TT---TSGGGTSSCCHH
T ss_pred -----cCccHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHH--CCCCEEEEEEeEeccccc-cc---ccccccccCCCH
Confidence 0122356899999999989999999999999999987 589999999999999998 54 4789998862
Q ss_pred ------------------CCCC------C-----C-----------------C-----------C-----------CCcc
Q 004946 390 ------------------DSNS------L-----P-----------------F-----------G-----------NYSR 401 (722)
Q Consensus 390 ------------------~~tg------~-----~-----------------~-----------~-----------~~~~ 401 (722)
..++ + . . + .+..
T Consensus 270 ~e~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 349 (651)
T 2e6k_A 270 EAVEATRRNLGWPYPPFVVPEEVYRHMDMREKGRAWQEAWEKALEAYARAYPDLHQELMRRLRGELPPLPEEPPSFDKPI 349 (651)
T ss_dssp HHHHHHHHHHTCCCCTTCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCCCCCCSCCCCCSCB
T ss_pred HHHHHHHHHcCCCcccccCChHHHHHHHHhhhchhhHHHHHHHHHHhhhhChHHHHHHHHHhcCcCCchhhhccccCccH
Confidence 0000 0 0 0 0 0146
Q ss_pred chHHHHHHHHHHHHhcCCCEEEEecCCCCccch-----HHHHH-hCCCceeecccchHHHHHHHHHHhcCC-CeeEEEec
Q 004946 402 TYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL-----QLFQE-KFPERYFDVGMAEQHAVTFSAGLACGG-LKPFCIIP 474 (722)
Q Consensus 402 s~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~l-----~~f~~-~~p~R~~d~GIaE~~av~~AaGlA~~G-~~p~~~t~ 474 (722)
+++++++++|.++++++|+++++++|+++++++ ..|++ +||+||||+||+|++|+++|+|||+.| +|||++||
T Consensus 350 ~~r~a~~~~L~~~~~~~p~~~~~~aDl~~s~~~~~~~~~~f~~~~~p~R~i~~gIaE~~~~~~a~GlA~~Gg~~P~~~t~ 429 (651)
T 2e6k_A 350 ATRAASGRALNLLAPRLPELLGGSADLTPSNNTKAEGMEDFSRANPLGRYLHFGVREHAMGAILNGLNLHGGYRAYGGTF 429 (651)
T ss_dssp CHHHHHHHHHHHHGGGCTTEEEEESSCHHHHTCSCTTCCBCBTTBTTCCEEECCSCHHHHHHHHHHHHHHSSCEEEEEEE
T ss_pred HHHHHHHHHHHHHHhhCCCEEEEeCccccccccccccccccCccCCCCceEecCcCHHHHHHHHHHHHHcCCCEEEEEeH
Confidence 789999999999999999999999999977765 45887 999999999999999999999999998 99999999
Q ss_pred HhhHHHHHHHHHHHHhcCCCCEEEEEeCCCc-cCCCCCCcCcHHHHHHhcCCCCcEEEeeCCHHHHHHHHHHHhhhCCCC
Q 004946 475 SAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRP 553 (722)
Q Consensus 475 ~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~~~~P 553 (722)
++|+.++++|| +++|++++||++++++.|+ +|+||+|||+.+|++++|++|||+|++|+|++|++.++++|++..++|
T Consensus 430 ~~F~~~~~~ai-r~~a~~~lpvv~~~t~~g~g~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~E~~~~l~~A~~~~~~P 508 (651)
T 2e6k_A 430 LVFSDYMRPAI-RLAALMGVPTVFVFTHDSIALGEDGPTHQPVEHLMSLRAMPNLFVIRPADAYETFYAWLVALRRKEGP 508 (651)
T ss_dssp GGGGGGSHHHH-HHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCSSHHHHHHHHHHHHHCCSSC
T ss_pred HHHHHHHHHHH-HHHHhcCCCEEEEEECCccccCCCcCccccHHHHHHhcCCCCcEEEecCCHHHHHHHHHHHHHcCCCC
Confidence 99999999885 7799999999999977776 799999999999999999999999999999999999999999855899
Q ss_pred EEEEecCCCcccccCCCCCCCCccccccEEEEEeC--CcEEEEEechhhHHHHHHHHHHHhcCCcEEEeecCccccchHH
Q 004946 554 VCFRYPRGAIVRTDLPGYRGIPIEEIGKGKVLVEG--KDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIK 631 (722)
Q Consensus 554 v~ir~~r~~~~~~~~p~~~~~~~~~igk~~vl~eG--~dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e 631 (722)
++||++|+..+. ++......+ +.| ++++++| +|++||++|++++.|++|++.|+++||+++|||++|++|||++
T Consensus 509 v~i~~~r~~~~~--~~~~~~~~~-~~G-~~vl~~g~~~dv~iva~G~~v~~al~Aa~~L~~~Gi~~~Vv~~~~~~p~d~~ 584 (651)
T 2e6k_A 509 TALVLTRQAVPL--LSPEKARGL-LRG-GYVLEDVEEPQGVLVATGSEVHLALRAQALLREKGVRVRVVSLPSFELFAAQ 584 (651)
T ss_dssp EEEECCSSCBCC--CCHHHHGGG-GGS-SEEEECCSSCSEEEEECTTHHHHHHHHHHHHHHTTCCEEEEECSCHHHHHTS
T ss_pred EEEEEeCCCCCC--CCcchhhhh-cCC-CEEEeeCCCCCEEEEEECHHHHHHHHHHHHHHhcCCcEEEEecCcCCccccc
Confidence 999999987432 221101124 455 4788887 8999999999999999999999999999999999999999998
Q ss_pred H---HHHHhcCCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHH
Q 004946 632 L---VRELCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATAL 708 (722)
Q Consensus 632 ~---i~~~~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~v~~ig~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~ 708 (722)
. +.+++++++.+||||++..+||++++ + +++|+ |.|+++|+.+++++++|+|+++|+++++
T Consensus 585 ~~~~~~~v~~~~~~vv~vE~~~~~G~~~~v--------------~-~~ig~-d~f~~sg~~~~l~~~~gl~~~~I~~~i~ 648 (651)
T 2e6k_A 585 PEAYRKEVLPPGLPVVAVEAGASLGWERYA--------------H-KVVAL-DRFGASAPYPEVYERLGFTPERVAEAFL 648 (651)
T ss_dssp CHHHHHHHSCTTSCEEEECSSCCTTGGGTC--------------S-EEECC-CSCCCSCCTTHHHHHTTCCHHHHHHHHH
T ss_pred cHHHHHHHhCcCCeEEEEeCCccCchHHhC--------------C-CEEEe-CCCCCCCCHHHHHHHhCCCHHHHHHHHH
Confidence 4 77777777789999999888888543 2 67899 9999999999999999999999999998
Q ss_pred HHh
Q 004946 709 SLL 711 (722)
Q Consensus 709 ~ll 711 (722)
+++
T Consensus 649 ~~l 651 (651)
T 2e6k_A 649 SLV 651 (651)
T ss_dssp TTC
T ss_pred HhC
Confidence 753
No 11
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=100.00 E-value=5e-93 Score=832.51 Aligned_cols=539 Identities=18% Similarity=0.219 Sum_probs=464.2
Q ss_pred HHHHHHHHHHHHHHhHhc-CCCCCCCcchHHHHHHHHh-h--ccCC------CCcEEEecCCchH---HHHHHHhCc---
Q 004946 99 LKQLAVEIRSELSSIVSK-TEKSLKSSLAAVELTVALH-H--VFHA------PVDKILWDVGEQT---YAHKILTGR--- 162 (722)
Q Consensus 99 l~~la~eiR~~ii~~~~~-~gGh~~~slg~vel~~aL~-~--vf~~------p~D~iv~d~GH~~---y~h~~ltGr--- 162 (722)
|+++|++||..++.++.+ ++||+|+++|++|++++|| + .||+ ++|+||||+||++ |+|++|+|+
T Consensus 4 ~~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~~~~lYa~~~l~G~~~~ 83 (669)
T 2r8o_A 4 RKELANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLKHNPQNPSWADRDRFVLSNGHGSMLIYSLLHLTGYDLP 83 (669)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHTCCCCTTCTTCTTCCEEEESSGGGHHHHHHHHHHHTCSCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCccCCchhHHHHHHHHHHHhhcCCcCCCCCCCCCeEEEeCccHHHHHHHHHHHcCCCCC
Confidence 678999999999999996 7999999999999999999 4 4663 5899999999999 999999999
Q ss_pred hhhhhHHHhhCCC-CCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcC----------CCCeEEEEecCCCcccchH
Q 004946 163 RSLIHTLRKKDGI-SGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKG----------KRECIVTVISNGTTMAGQA 231 (722)
Q Consensus 163 ~~~~~~~r~~ggl-~g~~~~~es~~d~~~~G~~G~~ls~A~G~A~A~~l~~----------~~~~Vv~viGDGa~~~G~~ 231 (722)
.+++.++||+++. +|||++.+++++.+++|++|+++|+|+|+|+|.++++ .+++|||++|||++++|++
T Consensus 84 ~~~l~~~r~~~~~~~ghp~~~~~~g~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~~~GDG~~~eG~~ 163 (669)
T 2r8o_A 84 MEELKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGIS 163 (669)
T ss_dssp HHHHTTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHH
T ss_pred HHHHHHhhcCCCCCCCCCCccCCCCcccccccccchHHHHHHHHHHHHHhccccccCccCCcCCeEEEEECHhHhcchHH
Confidence 8899999999985 8999988899999999999999999999999998764 4889999999999999999
Q ss_pred HHHHHHhhhcCCC-EEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHH
Q 004946 232 YEAMSNAGYLDSN-MIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVD 310 (722)
Q Consensus 232 ~EAln~A~~~~~p-livIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~ 310 (722)
||||++|+.+++| +++|+|||+++ ++.+++..
T Consensus 164 ~Eal~~A~~~~L~~li~i~~nN~~~--------i~~~~~~~--------------------------------------- 196 (669)
T 2r8o_A 164 HEVCSLAGTLKLGKLIAFYDDNGIS--------IDGHVEGW--------------------------------------- 196 (669)
T ss_dssp HHHHHHHHHTTCTTEEEEEEECSEE--------TTEEGGGT---------------------------------------
T ss_pred HHHHHHHHHcCCCcEEEEEECCCcE--------eccccccc---------------------------------------
Confidence 9999999999955 99999999983 22222200
Q ss_pred HHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEEEEEeeccCCCcccccccchhhccCCCC-
Q 004946 311 EYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGAS- 389 (722)
Q Consensus 311 ~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kG~G~~~ae~~~~~~~~H~~~~- 389 (722)
+..+...+|++|||++++++||||+++|.++++++++. .++|++||++|.||+|+++.+. ..+||+.+.
T Consensus 197 ------~~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~~-~~~P~lI~~~T~kg~G~~~~~~---~~~~H~~~~~ 266 (669)
T 2r8o_A 197 ------FTDDTAMRFEAYGWHVIRDIDGHDAASIKRAVEEARAV-TDKPSLLMCKTIIGFGSPNKAG---THDSHGAPLG 266 (669)
T ss_dssp ------CCCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHHC-CSSCEEEEEECCTTTTCTTTTT---SGGGTSSCCC
T ss_pred ------cCccHHHHHHHCCCeEEeEECCCCHHHHHHHHHHHHhc-CCCCEEEEEEeEeccCcCCcCC---CCcccCCCCC
Confidence 01223568999999999899999999999999999873 4789999999999999998664 788998742
Q ss_pred -------------------CCCC-----------C------------------------------CC-------------
Q 004946 390 -------------------DSNS-----------L------------------------------PF------------- 396 (722)
Q Consensus 390 -------------------~~tg-----------~------------------------------~~------------- 396 (722)
..++ + ..
T Consensus 267 ~ee~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~ 346 (669)
T 2r8o_A 267 DAEIALTREQLGWKYAPFEIPSEIYAQWDAKEAGQAKESAWNEKFAAYAKAYPQEAAEFTRRMKGEMPSDFDAKAKEFIA 346 (669)
T ss_dssp HHHHHHHHHHHTCCCCTTCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhChHHHHHHHHHhcccCChhhhhhhHHHhh
Confidence 0000 0 00
Q ss_pred ----CCCccchHHHHHHHHHHHHhcCCCEEEEecCCCCccch-----HHHHHhCCCceeecccchHHHHHHHHHHhcC-C
Q 004946 397 ----GNYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL-----QLFQEKFPERYFDVGMAEQHAVTFSAGLACG-G 466 (722)
Q Consensus 397 ----~~~~~s~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~l-----~~f~~~~p~R~~d~GIaE~~av~~AaGlA~~-G 466 (722)
+.+..+++++++++|.++++++|+++++++|+++++++ ..|+++||+||||+||+|++|+++|+|||+. |
T Consensus 347 ~~~~~~~~~~~r~a~~~~L~~l~~~~p~v~~~~aDl~~s~~~~~~~~~~f~~~~p~R~id~GIaE~~~v~~a~GlA~~gG 426 (669)
T 2r8o_A 347 KLQANPAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDAAGNYIHYGVREFGMTAIANGISLHGG 426 (669)
T ss_dssp HHHHSCCCEEHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCCCTTCCBTTTCTTCSEEECCSCHHHHHHHHHHHHHHSS
T ss_pred hhcCCCccHHHHHHHHHHHHHHHhhCCCeEEecCcccccccccccccccccccCCCCeeecchhHHHHHHHHHHHHHcCC
Confidence 01234678899999999999999999999999877654 3789999999999999999999999999999 8
Q ss_pred CeeEEEecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCc-cCCCCCCcCcHHHHHHhcCCCCcEEEeeCCHHHHHHHHHH
Q 004946 467 LKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVAT 545 (722)
Q Consensus 467 ~~p~~~t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~ 545 (722)
++||+++|++|+.++++||. ++|++++||++++++.|+ +|+||+|||+.+|++++|++|||+|++|+|++|++.++++
T Consensus 427 ~~P~~~tf~~F~~~~~~~ir-~~a~~~lpvv~~~t~~g~~~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~E~~~~l~~ 505 (669)
T 2r8o_A 427 FLPYTSTFLMFVEYARNAVR-MAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTPNMSTWRPCDQVESAVAWKY 505 (669)
T ss_dssp CEEEEEEEGGGGGTTHHHHH-HHHHTTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCSSHHHHHHHHHH
T ss_pred CeEEEeehHHHHHHHHHHHH-HHHhcCCCEEEEEeCCCcCcCCCCCccCCHHHHHHhcCCCCCEEEecCCHHHHHHHHHH
Confidence 99999999999999999974 589999999999987776 7899999999999999999999999999999999999999
Q ss_pred HhhhCCCCEEEEecCCCcccccCCCCCC--CCccccccEEEEEe--C-CcEEEEEechhhHHHHHHHHHHHhcCCcEEEe
Q 004946 546 VASIDDRPVCFRYPRGAIVRTDLPGYRG--IPIEEIGKGKVLVE--G-KDVALLGYGAMVQNCLKARALLSKLGIDVTVA 620 (722)
Q Consensus 546 a~~~~~~Pv~ir~~r~~~~~~~~p~~~~--~~~~~igk~~vl~e--G-~dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vi 620 (722)
|++..++|++||++|+..+. ++.... ..+ ++| ++++++ | +|++||++|++++.|++|++.|+++||+++||
T Consensus 506 a~~~~~~Pv~i~~~r~~~~~--~~~~~~~~~~~-~~G-~~vl~~~~g~~dv~iva~G~~v~~al~Aa~~L~~~Gi~~~Vv 581 (669)
T 2r8o_A 506 GVERQDGPTALILSRQNLAQ--QERTEEQLANI-ARG-GYVLKDCAGQPELIFIATGSEVELAVAAYEKLTAEGVKARVV 581 (669)
T ss_dssp HHHCSSSCEEEECCSSEECC--CCCCHHHHHHG-GGS-CEEEECCSSSCSEEEEECGGGHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHhCCCcEEEEeCCCCCCC--CCCccchhhhc-cCC-CEEEeccCCCCCEEEEEECHHHHHHHHHHHHHHhcCCCeEEE
Confidence 99865899999999987432 222110 114 566 478888 7 89999999999999999999999999999999
Q ss_pred ecCccccchHH---HHHHHhcCC-CeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHc
Q 004946 621 DARFCKPLDIK---LVRELCQNH-TFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALA 696 (722)
Q Consensus 621 dl~~lkPld~e---~i~~~~~~~-~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~v~~ig~~d~f~~~g~~~~l~~~~ 696 (722)
|++|++|||++ .+.++++++ +++|+||++..+||++ ++.+++ ..+|+ |.|+.+|+.+++++++
T Consensus 582 ~~~~~~pld~~~~~~~~~v~~~~~~~vv~vE~~~~~g~~~----~~~~~~--------~~ig~-d~fg~sg~~~~l~~~~ 648 (669)
T 2r8o_A 582 SMPSTDAFDKQDAAYRESVLPKAVTARVAVEAGIADYWYK----YVGLNG--------AIVGM-TTFGESAPAELLFEEF 648 (669)
T ss_dssp ECSCHHHHHTSCHHHHHHHSCTTCCCEEEEEEEEGGGGHH----HHTTSS--------EEEEE-CSCCCSSCHHHHHHHT
T ss_pred EeccCCccccchHHHHHHhccccCceEEEEeCCchhhHHH----HhcCCC--------eEEEc-CCCCCcCCHHHHHHHh
Confidence 99999999988 477777774 7899999998888985 343322 45888 7999999999999999
Q ss_pred CCCHHHHHHHHHHHhh
Q 004946 697 GLTGHHIAATALSLLG 712 (722)
Q Consensus 697 gl~~~~I~~~i~~ll~ 712 (722)
|||+++|++++++++-
T Consensus 649 Gl~~~~I~~~~~~~~~ 664 (669)
T 2r8o_A 649 GFTVDNVVAKAKELLH 664 (669)
T ss_dssp TCSHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999998874
No 12
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=100.00 E-value=4.9e-92 Score=824.78 Aligned_cols=535 Identities=18% Similarity=0.202 Sum_probs=461.8
Q ss_pred HHHH-HHHHHHHHHHHhHhc-CCCCCCCcchHHHHHHHHhh--ccCC------CCcEEEecCCchH---HHHHHHhCc--
Q 004946 98 ELKQ-LAVEIRSELSSIVSK-TEKSLKSSLAAVELTVALHH--VFHA------PVDKILWDVGEQT---YAHKILTGR-- 162 (722)
Q Consensus 98 ~l~~-la~eiR~~ii~~~~~-~gGh~~~slg~vel~~aL~~--vf~~------p~D~iv~d~GH~~---y~h~~ltGr-- 162 (722)
+|++ +|++||..++.++++ ++||+|+++|++|++++||+ +||+ ++|+||||+||++ |+|++++|+
T Consensus 6 ~l~~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~~~~~~~p~~~~rDr~v~s~GH~~~~lYa~~~l~G~~~ 85 (680)
T 1gpu_A 6 DIDKLAVSTIRILAVDTVSKANSGHPGAPLGMAPAAHVLWSQMRMNPTNPDWINRDRFVLSNGHAVALLYSMLHLTGYDL 85 (680)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHTCCCCTTCTTCTTCCEEEESSGGGHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCccCCchhHHHHHHHHHHhCCCCccCCCCCCCCEEEEecchHHHHHHHHHHHhCCCC
Confidence 7888 999999999999997 79999999999999999997 7874 5899999999999 999999999
Q ss_pred -hhhhhHHHhhCCC-CCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcC----------CCCeEEEEecCCCcccch
Q 004946 163 -RSLIHTLRKKDGI-SGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKG----------KRECIVTVISNGTTMAGQ 230 (722)
Q Consensus 163 -~~~~~~~r~~ggl-~g~~~~~es~~d~~~~G~~G~~ls~A~G~A~A~~l~~----------~~~~Vv~viGDGa~~~G~ 230 (722)
.+++.++||+|+. +|||++ +++++.+++|++|+++|+|+|+|+|.++++ .+++|||++|||++++|+
T Consensus 86 ~~~~l~~~r~~g~~~~ghp~~-~~~g~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~vv~i~GDG~~~eG~ 164 (680)
T 1gpu_A 86 SIEDLKQFRQLGSRTPGHPEF-ELPGVEVTTGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGI 164 (680)
T ss_dssp CHHHHTTTTCTTCSCCSSCCT-TSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHH
T ss_pred CHHHHHhhcccCCCCCCCCCc-cCCCeeeccccccchHHHHHHHHHHHHHhccccccCccCCCCCeEEEEECCCccchhh
Confidence 8899999999985 899998 899999999999999999999999998765 488999999999999999
Q ss_pred HHHHHHHhhhcCCC-EEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHH
Q 004946 231 AYEAMSNAGYLDSN-MIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKV 309 (722)
Q Consensus 231 ~~EAln~A~~~~~p-livIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~ 309 (722)
+|||||+|+.+++| +++|+|||+++ ++.+++..
T Consensus 165 ~~Eal~~A~~~~L~~li~i~~nN~~~--------i~~~~~~~-------------------------------------- 198 (680)
T 1gpu_A 165 SSEASSLAGHLKLGNLIAIYDDNKIT--------IDGATSIS-------------------------------------- 198 (680)
T ss_dssp HHHHHHHHHHTTCTTEEEEEEECSEE--------TTEEGGGT--------------------------------------
T ss_pred HHHHHHHHHHhCCCcEEEEEECCCce--------Eecccccc--------------------------------------
Confidence 99999999999965 99999999983 22222200
Q ss_pred HHHhhcccCCChhhhHhhcCceEEeecCCC-CHHHHHHHHHHHHhcCCCCCEEEEEEeeccCCCcccccccchhhccCCC
Q 004946 310 DEYARGMIGPQGSTLFEELGLYYIGPVDGH-NIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGA 388 (722)
Q Consensus 310 ~~~~~~~~~~~~~~lfea~G~~~~~~vdGh-d~~~l~~al~~a~~~~~~~P~lI~v~T~kG~G~~~ae~~~~~~~~H~~~ 388 (722)
+..+...+|++|||++++++||| |+++|.++++++++. .++|++||++|.||+|++ .+ +..+||+..
T Consensus 199 -------~~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~al~~A~~~-~~~P~lI~~~T~kg~G~~-~~---~~~~~H~~~ 266 (680)
T 1gpu_A 199 -------FDEDVAKRYEAYGWEVLYVENGNEDLAGIAKAIAQAKLS-KDKPTLIKMTTTIGYGSL-HA---GSHSVHGAP 266 (680)
T ss_dssp -------CCCCHHHHHHHHTCEEEEESCTTTCHHHHHHHHHHHHHC-TTSCEEEEEECCTTTTST-TT---TSGGGSSSC
T ss_pred -------cCccHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHC-CCCCEEEEEEeecccccc-cC---CCCccCCCC
Confidence 01223568999999999899999 999999999999873 478999999999999998 44 467899876
Q ss_pred C---------------------CCCC-------------CC---------------------------------------
Q 004946 389 S---------------------DSNS-------------LP--------------------------------------- 395 (722)
Q Consensus 389 ~---------------------~~tg-------------~~--------------------------------------- 395 (722)
. ..++ +.
T Consensus 267 ~~~ee~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~p~~~~~~~ 346 (680)
T 1gpu_A 267 LKADDVKQLKSKFGFNPDKSFVVPQEVYDHYQKTILKPGVEANNKWNKLFSEYQKKFPELGAELARRLSGQLPANWESKL 346 (680)
T ss_dssp CCHHHHHHHHHHTTCCTTCCSCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCCTTGGGGS
T ss_pred CCHHHHHHHHHHcCCCcCCCccCCHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhChHHHHHHHHHhcccCCchhhhhc
Confidence 2 0000 00
Q ss_pred ----CCCCccchHHHHHHHHHHHHhcCCCEEEEecCCCCccch-----HHHHH------hCCCceeecccchHHHHHHHH
Q 004946 396 ----FGNYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL-----QLFQE------KFPERYFDVGMAEQHAVTFSA 460 (722)
Q Consensus 396 ----~~~~~~s~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~l-----~~f~~------~~p~R~~d~GIaE~~av~~Aa 460 (722)
.+.+..+++++++++|.++++++|+++++++|++.++++ ..|++ +||+||||+||+|++|+++|+
T Consensus 347 ~~~~~~~~~~a~r~a~~~~L~~~~~~~p~v~~~~aDl~~s~~~~~~g~~~f~~~~~~~~~~p~R~~d~gIaE~~~vg~a~ 426 (680)
T 1gpu_A 347 PTYTAKDSAVATRKLSETVLEDVYNQLPELIGGSADLTPSNLTRWKEALDFQPPSSGSGNYSGRYIRYGIREHAMGAIMN 426 (680)
T ss_dssp CCCCTTSCCBCHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTCCEECCTTTSSEETTCCEEECCSCHHHHHHHHH
T ss_pred hhhccCCcchHHHHHHHHHHHHHHhhCCCEEEEecccccccccccccccccccccccccCCCCceecCCccHHHHHHHHH
Confidence 001235688999999999999999999999999877654 46887 999999999999999999999
Q ss_pred HHhcCC-Ce-eEEEecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCc-cCCCCCCcCcHHHHHHhcCCCCcEEEeeCCHH
Q 004946 461 GLACGG-LK-PFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDED 537 (722)
Q Consensus 461 GlA~~G-~~-p~~~t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~d~a~~~~iP~l~V~~Psd~~ 537 (722)
|||+.| ++ ||+++|++|+.++++|| +++|++++||++++++.|+ +|+||+|||+.+|++++|++|||+|++|+|++
T Consensus 427 GlA~~Gg~~~P~~~~f~~F~~~~~~ai-r~~a~~~lpvv~v~t~~g~g~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~ 505 (680)
T 1gpu_A 427 GISAFGANYKPYGGTFLNFVSYAAGAV-RLSALSGHPVIWVATHDSIGVGEDGPTHQPIETLAHFRSLPNIQVWRPADGN 505 (680)
T ss_dssp HHHHHCTTCEEEEEEEHHHHGGGHHHH-HHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSSSCEEECCCSHH
T ss_pred HHHhcCCCceEEEeehHHHHHHHHHHH-HHHHhcCCCEEEEEeCCccccCCCCCccCCHHHHHHhcCCCCCEEEecCCHH
Confidence 999998 99 99999999999999997 5699999999999987776 78999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhCCCCEEEEecCCCcccccCCCCCCCC-ccccccEEEEEeC--CcEEEEEechhhHHHHHHHHHHHhcC
Q 004946 538 ELVDMVATVASIDDRPVCFRYPRGAIVRTDLPGYRGIP-IEEIGKGKVLVEG--KDVALLGYGAMVQNCLKARALLSKLG 614 (722)
Q Consensus 538 E~~~~l~~a~~~~~~Pv~ir~~r~~~~~~~~p~~~~~~-~~~igk~~vl~eG--~dv~lva~Gs~v~~aleAa~~L~~~G 614 (722)
|++.++++|++..++|++||++|+..+. ++.. .+. + ++| ++++++| +||+||++|++++.|++|++.|+++|
T Consensus 506 e~~~~l~~A~~~~~~Pv~i~~~r~~~~~--~~~~-~~~~~-~~G-~~vl~~g~~~dvtiva~G~~v~~al~Aa~~L~~~G 580 (680)
T 1gpu_A 506 EVSAAYKNSLESKHTPSIIALSRQNLPQ--LEGS-SIESA-SKG-GYVLQDVANPDIILVATGSEVSLSVEAAKTLAAKN 580 (680)
T ss_dssp HHHHHHHHHHHCSSCCEEEECCSSCBCC--CTTC-CHHHH-TTS-CEEEECCSSCSEEEEECTHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcEEEEecCCCCCC--CCCc-chhhc-cCC-CEEEecCCCCCEEEEEEcHHHHHHHHHHHHHHhcC
Confidence 9999999999855899999999987543 2221 122 4 566 4788888 89999999999999999999999999
Q ss_pred CcEEEeecCccccchHH---HHHHHhcCC-CeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHH
Q 004946 615 IDVTVADARFCKPLDIK---LVRELCQNH-TFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPT 690 (722)
Q Consensus 615 i~v~Vidl~~lkPld~e---~i~~~~~~~-~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~v~~ig~~d~f~~~g~~~ 690 (722)
|+++|||++|++|||++ .+.++++++ +. |+||++..+||+++| + . . +|+ |.|+.+|+.+
T Consensus 581 i~~~Vvd~~~l~pld~~~~~~~~sv~~~~~~~-v~vE~~~~~g~~~~v-------~-----~--~-~gv-~~f~~~g~~~ 643 (680)
T 1gpu_A 581 IKARVVSLPDFFTFDKQPLEYRLSVLPDNVPI-MSVEVLATTCWGKYA-------H-----Q--S-FGI-DRFGASGKAP 643 (680)
T ss_dssp CCEEEEECSCHHHHHHSCHHHHHHHSCSSSCE-EEECSSCSTTGGGTC-------S-----E--E-ECC-CSCCCCSCHH
T ss_pred CCEEEEEcCCCCcchhhhHHHHHHHhccCCce-EEEeCCccccHHHhc-------C-----c--c-eee-CcCCCCCCHH
Confidence 99999999999999998 466666664 55 999999888888543 1 1 1 777 7999999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHhhcc
Q 004946 691 QQLALAGLTGHHIAATALSLLGRT 714 (722)
Q Consensus 691 ~l~~~~gl~~~~I~~~i~~ll~~~ 714 (722)
++++++|+|+++|+++|+++++..
T Consensus 644 ~l~~~~gl~~~~I~~~i~~~l~~~ 667 (680)
T 1gpu_A 644 EVFKFFGFTPEGVAERAQKTIAFY 667 (680)
T ss_dssp HHHHHTTCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHhh
Confidence 999999999999999999998643
No 13
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=100.00 E-value=1.1e-90 Score=811.97 Aligned_cols=535 Identities=19% Similarity=0.203 Sum_probs=464.1
Q ss_pred HHHHHHHHHHHHHHHhHhc-CCCCCCCcchHHHHHHHHhh---ccC------CCCcEEEecCCchH---HHHHHHhCc--
Q 004946 98 ELKQLAVEIRSELSSIVSK-TEKSLKSSLAAVELTVALHH---VFH------APVDKILWDVGEQT---YAHKILTGR-- 162 (722)
Q Consensus 98 ~l~~la~eiR~~ii~~~~~-~gGh~~~slg~vel~~aL~~---vf~------~p~D~iv~d~GH~~---y~h~~ltGr-- 162 (722)
+|+++|++||..++.++.+ ++||+|+++|+++++.+||+ .|| .++|+||+|+||++ |++++++|+
T Consensus 5 ~~~~~a~~iR~~~~~~v~~a~~GH~g~~ls~a~~~~~L~~~~l~~~p~~p~~~~rDrfvls~GH~~~~lYa~l~l~G~~~ 84 (673)
T 1r9j_A 5 SIEKVANCIRCLAADIVQGGKSGHPGTPMGMAPMSAVLWTEVMKYNSQDPDWVDRDRFVMSNGHGCALQYALLHMAGYNL 84 (673)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCSCCHHHHHTHHHHHHHHHTTCCCCTTCTTCTTCCEEEESSGGGHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHHHHhhCCCCCCCCCCCCCeEEEccccHHHHHHHHHHHcCCCC
Confidence 4778999999999999996 79999999999999999996 455 23799999999999 999999999
Q ss_pred -hhhhhHHHhhCC-CCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcC----------CCCeEEEEecCCCcccch
Q 004946 163 -RSLIHTLRKKDG-ISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKG----------KRECIVTVISNGTTMAGQ 230 (722)
Q Consensus 163 -~~~~~~~r~~gg-l~g~~~~~es~~d~~~~G~~G~~ls~A~G~A~A~~l~~----------~~~~Vv~viGDGa~~~G~ 230 (722)
.+++.++||+++ +.|||++.+++++.+++|++|+++|+|+|+|+|.++++ .+++|||++|||++++|+
T Consensus 85 ~~~~l~~~r~~~s~~~ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~g~~~~d~~v~~~~GDG~~~eG~ 164 (673)
T 1r9j_A 85 TMDDLKGFRQDGSRTPGHPERFVTPGVEVTTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGV 164 (673)
T ss_dssp CHHHHHTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHH
T ss_pred CHHHHHhhccCCCCCCCCCCCCCCCCeeeccCCCCCcHHHHHHHHHHHHHhhhhccccccCCCCCEEEEEECcchhcccH
Confidence 588999999997 56999988899999999999999999999999998765 689999999999999999
Q ss_pred HHHHHHHhhhcCC-CEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHH
Q 004946 231 AYEAMSNAGYLDS-NMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKV 309 (722)
Q Consensus 231 ~~EAln~A~~~~~-plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~ 309 (722)
+|||+++|+++++ |+|+|+|||+++ ++.++...
T Consensus 165 ~~Eal~~A~~~~L~~li~i~d~N~~~--------i~~~~~~~-------------------------------------- 198 (673)
T 1r9j_A 165 CQEALSLAGHLALEKLIVIYDSNYIS--------IDGSTSLS-------------------------------------- 198 (673)
T ss_dssp HHHHHHHHHHHTCTTEEEEEEECSBC--------SSSBGGGT--------------------------------------
T ss_pred HHHHHHHHHHhCCCcEEEEEECCCCc--------cccchhhc--------------------------------------
Confidence 9999999999995 599999999983 22222210
Q ss_pred HHHhhcccCCChhhhHhhcCceEEeecCC-CCHHHHHHHHHHHHhcCCCCCEEEEEEeeccCCCcccccccchhhccCCC
Q 004946 310 DEYARGMIGPQGSTLFEELGLYYIGPVDG-HNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGA 388 (722)
Q Consensus 310 ~~~~~~~~~~~~~~lfea~G~~~~~~vdG-hd~~~l~~al~~a~~~~~~~P~lI~v~T~kG~G~~~ae~~~~~~~~H~~~ 388 (722)
+..+...+|++|||++++++|| ||++++.++++++++. .++|++|+++|.||+|++ .| +..++|+.+
T Consensus 199 -------~~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~Al~~A~~~-~~~P~lI~~~T~kg~G~~-~~---~~~~~H~~~ 266 (673)
T 1r9j_A 199 -------FTEQCHQKYVAMGFHVIEVKNGDTDYEGLRKALAEAKAT-KGKPKMIVQTTTIGFGSS-KQ---GTEKVHGAP 266 (673)
T ss_dssp -------CCCCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHHC-CSSCEEEEEECCTTTTST-TT---TSGGGTSSC
T ss_pred -------cCHhHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHHHHHc-CCCCEEEEEecccccccc-cC---CCcccccCC
Confidence 0122356899999999988999 9999999999999863 479999999999999998 55 478999975
Q ss_pred CC--------------CC-------------------CC------------------------------CCC--------
Q 004946 389 SD--------------SN-------------------SL------------------------------PFG-------- 397 (722)
Q Consensus 389 ~~--------------~t-------------------g~------------------------------~~~-------- 397 (722)
.. .. |. ..+
T Consensus 267 ~~~ee~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~~~P~~~~~~~~~~~~~~p~~~~~~~p 346 (673)
T 1r9j_A 267 LGEEDIANIKAKFGRDPQKKYDVDDDVRAVFRMHIDKCSAEQKAWEELLAKYTAAFPAEGAAFVAQMRGELPSGWEAKLP 346 (673)
T ss_dssp CCHHHHHHHHHHTTSCSSCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCCTTTGGGSC
T ss_pred CCHHHHHHHHHhcCCCCcccccCCHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhChhHHHHHHHHhcCCCCchhhhhcc
Confidence 30 00 00 000
Q ss_pred --CCccchHHHHHHHHHHHHhcCCCEEEEecCCCCccchH--H-----HHH-hCCCceeecccchHHHHHHHHHHhcC-C
Q 004946 398 --NYSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQ--L-----FQE-KFPERYFDVGMAEQHAVTFSAGLACG-G 466 (722)
Q Consensus 398 --~~~~s~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~l~--~-----f~~-~~p~R~~d~GIaE~~av~~AaGlA~~-G 466 (722)
....+++++++++|.++++++|+++++++|+++++++. + |++ +||+||||+||+|++|+++|+|||+. |
T Consensus 347 ~~~~~~a~r~a~~~~L~~l~~~~p~vv~~~aDl~~s~~~~~~~~~~~~f~~~~~~~R~id~GIaE~~~~~~a~GlA~~GG 426 (673)
T 1r9j_A 347 TNSSAIATRKASENCLAVLFPAIPALMGGSADLTPSNLTRPASANLVDFSSSSKEGRYIRFGVREHAMCAILNGLDAHDG 426 (673)
T ss_dssp CCCSCEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCSCGGGCCCBCBTTBTTCCEEECCSCHHHHHHHHHHHHHHSS
T ss_pred ccccchHHHHHHHHHHHHHHhhCCCEEEEeccccccccccccCcccccccccCCCCCeEecCccHHHHHHHHHHHHhcCC
Confidence 01356889999999999999999999999998776653 2 887 99999999999999999999999999 6
Q ss_pred CeeEEEecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCc-cCCCCCCcCcHHHHHHhcCCCCcEEEeeCCHHHHHHHHHH
Q 004946 467 LKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVAT 545 (722)
Q Consensus 467 ~~p~~~t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~ 545 (722)
++||++||++|++|+++|| +++|++++||++++++.|+ +|+||+|||+.+|+++++++||++|++|+|++|++.++++
T Consensus 427 ~~P~~~~~~~F~~~~~~~i-r~~a~~~~pvv~~~t~~g~g~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~e~~~~l~~ 505 (673)
T 1r9j_A 427 IIPFGGTFLNFIGYALGAV-RLAAISHHRVIYVATHDSIGVGEDGPTHQPVELVAALRAMPNLQVIRPSDQTETSGAWAV 505 (673)
T ss_dssp CEEEEEEEGGGGGGGHHHH-HHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHHSTTCEEECCSSHHHHHHHHHH
T ss_pred CEEEEEehHHHHHHHHHHH-HHHHhcCCCEEEEEECCccCcCCCCcccCCHHHHHHHcCCCCCEEEeCCCHHHHHHHHHH
Confidence 9999999999999999997 5689999999999987776 7999999999999999999999999999999999999999
Q ss_pred HhhhCCCCEEEEecCCCcccccCCCCCCC-CccccccEEEEEeC--CcEEEEEechhhHHHHHHHHHHHhcCCcEEEeec
Q 004946 546 VASIDDRPVCFRYPRGAIVRTDLPGYRGI-PIEEIGKGKVLVEG--KDVALLGYGAMVQNCLKARALLSKLGIDVTVADA 622 (722)
Q Consensus 546 a~~~~~~Pv~ir~~r~~~~~~~~p~~~~~-~~~~igk~~vl~eG--~dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl 622 (722)
|++..++|++||++|+..+. ++.. .+ .+ ++| ++++++| +||+||++|++++.|++|++.|+++ |+++|||+
T Consensus 506 a~~~~~~Pv~i~~~r~~~~~--~~~~-~~~~~-~~G-a~vl~~g~~~dv~lia~G~~v~~al~Aa~~L~~~-i~~~Vv~~ 579 (673)
T 1r9j_A 506 ALSSIHTPTVLCLSRQNTEP--QSGS-SIEGV-RHG-AYSVVDVPDLQLVIVASGSEVSLAVDAAKALSGE-LRVRVVSM 579 (673)
T ss_dssp HHHCTTCCEEEECCSSEECC--CTTC-CHHHH-HTS-CEEEECCTTCSEEEEECGGGHHHHHHHHHHHTTT-CCEEEEEC
T ss_pred HHHhCCCeEEEEEcCCCCCC--CCCc-ccccc-cCC-CEEEeeCCCCCEEEEEechhHHHHHHHHHHHHhc-CCEEEEeC
Confidence 99855899999999987432 2221 22 34 567 6788888 8999999999999999999999998 99999999
Q ss_pred CccccchHHH---HHHHhcCCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCC
Q 004946 623 RFCKPLDIKL---VRELCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLT 699 (722)
Q Consensus 623 ~~lkPld~e~---i~~~~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~v~~ig~~d~f~~~g~~~~l~~~~gl~ 699 (722)
+|++|||++. +.+++++++++|+||++..+||++++ +++ +|+ |.|+++|+.+++++++|+|
T Consensus 580 ~sl~pld~~~~~~i~~~~~~~~~vv~vE~~~~~g~~~~v--------------~~~-~g~-d~f~~sg~~~~L~~~~g~~ 643 (673)
T 1r9j_A 580 PCQELFDAQPDTYRQAVLPAGVPVVSVEAYVSFGWEKYS--------------HAH-VGM-SGFGASAPAGVLYKKFGIT 643 (673)
T ss_dssp SCHHHHHTSCHHHHHHHSCTTSCEEEECSSCCTTGGGTC--------------SEE-ESC-SSCCCSSCHHHHHHHTTCS
T ss_pred CCCchhhcccHHHHHHHhccCCeEEEEeCCCccchHHhc--------------Cce-EEe-ccCCCCCCHHHHHHHHCcC
Confidence 9999999985 88999998889999999888887543 133 898 9999999999999999999
Q ss_pred HHHHHHHHHHHhhc
Q 004946 700 GHHIAATALSLLGR 713 (722)
Q Consensus 700 ~~~I~~~i~~ll~~ 713 (722)
+++|+++|+++++.
T Consensus 644 ~~~I~~~i~~~l~~ 657 (673)
T 1r9j_A 644 VEEVVRTGRELAKR 657 (673)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999854
No 14
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=100.00 E-value=5.9e-90 Score=818.28 Aligned_cols=603 Identities=15% Similarity=0.135 Sum_probs=475.7
Q ss_pred CCccccCCCCchhccCCCHHHHH-HHHHHHHHHHHHhHhc-C------CCCCCCcchHHHHHHHHhhc-cCC-----CCc
Q 004946 78 PTPILDLVENPLRLKSLTIKELK-QLAVEIRSELSSIVSK-T------EKSLKSSLAAVELTVALHHV-FHA-----PVD 143 (722)
Q Consensus 78 ~~~~l~~i~~p~~~~~l~~~~l~-~la~eiR~~ii~~~~~-~------gGh~~~slg~vel~~aL~~v-f~~-----p~D 143 (722)
.||+|++|+.|.|.+.....+|+ ++|.+||..++.++++ + |||+++++|++|++.+||++ |+. ++|
T Consensus 56 ~~~~l~~i~~~~~~~~p~d~~l~~~la~~iR~~~i~~v~~a~~~~~~~gGH~gs~ls~ael~~~l~~~~~~~~~~~~~~D 135 (886)
T 2qtc_A 56 ISNYINTIPVEEQPEYPGNLELERRIRSAIRWNAIMTVLRASKKDLELGGHMASFQSSATIYDVCFNHFFRARNEQDGGD 135 (886)
T ss_dssp CCCSSCSSCGGGCCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHTCSCCCCCSHHHHHHHHHHHHHHHHTCCCCCSSSCCC
T ss_pred CCchhhhCCCccccCCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccCcCCcHHHHHHHHHHHHHhcCCCCCCCCCC
Confidence 57999999888887777777999 8999999999999996 5 79999999999999999976 675 689
Q ss_pred EEEecCCchH---HHHHHHhCch--hhhhHHHh---hCCCCCCCCCCCCCC-CCcCcCCCcchHHHHHHHHHHHHH----
Q 004946 144 KILWDVGEQT---YAHKILTGRR--SLIHTLRK---KDGISGYTSRSESEY-DPFNAGHGCNSVSAGLGMAVARDI---- 210 (722)
Q Consensus 144 ~iv~d~GH~~---y~h~~ltGr~--~~~~~~r~---~ggl~g~~~~~es~~-d~~~~G~~G~~ls~A~G~A~A~~l---- 210 (722)
||||+||++ |+|++|+||. ++|.++|| .+|+++||++.++|+ +.|++||+|+++++|+|+|+++++
T Consensus 136 -~V~~~GH~sp~~Ya~~~l~Gr~~~e~l~~fRq~~~~~gl~~~p~~~~~p~~~~~~tG~~G~g~s~AiG~A~a~~~l~~~ 214 (886)
T 2qtc_A 136 -LVYFQGHISPGVYARAFLEGRLTQEQLDNFRQEVHGNGLSSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHR 214 (886)
T ss_dssp -EEECCGGGHHHHHHHHHHTTSSCHHHHTTBTCCTTSSCBCSSCCTTTSTTTCCCCCCSTTHHHHHHHHHHHHHHHHHHT
T ss_pred -EEEEcchhHHHHHHHHHHhCCCCHHHHHhccCCCCCCCCCCCCCcccCCCcccccccccCccHHHHHHHHHHhhhhccc
Confidence 999999999 9999999996 89999999 557999999999998 999999999999999999999998
Q ss_pred ---cCCCCeEEEEecCCCcccchHHHHHHHhhhcC-CCEEEEEECCCCCCCCCccCCCCcchhh---hhhhhhhhhhhhH
Q 004946 211 ---KGKRECIVTVISNGTTMAGQAYEAMSNAGYLD-SNMIVILNDSRHSLHPKIEESPKTSINA---LSSTLSRIQSSKS 283 (722)
Q Consensus 211 ---~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~-~plivIv~dN~~~s~~t~~~~~~~~~g~---l~~~l~~~~~~~~ 283 (722)
++.+++||||+|||++++|++|||||+|+.++ .|||||||||+++ ++++++. +...|.+
T Consensus 215 ~~~~~~~~~v~aviGDG~l~eG~~~EAl~~A~~~~L~nli~Vvn~N~~s--------i~~~v~~~~~~~~~l~~------ 280 (886)
T 2qtc_A 215 GLKDTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQR--------LDGPVTGNGKIINELEG------ 280 (886)
T ss_dssp TSCCCTTCCEEEEEETGGGGSHHHHTTHHHHHHTTCTTEEEEEEECSBC--------SSSBSCTTSCHHHHHHH------
T ss_pred ccccCCCCEEEEEECCccccccchHHHHHHHHHcCCCcEEEEEECCCcc--------cCCCccccccccHHHHH------
Confidence 78899999999999999999999999999999 5799999999983 4556664 2232322
Q ss_pred HHHHHHHHhhhhhhc-------------CccHHHHHHHHHH------------HhhcccCCC---hhhhHhh---cCceE
Q 004946 284 FRQLREVAKGMTKRI-------------GRGMHEWAAKVDE------------YARGMIGPQ---GSTLFEE---LGLYY 332 (722)
Q Consensus 284 ~~~~r~~~~~i~~~~-------------g~~~~~~~~~~~~------------~~~~~~~~~---~~~lfea---~G~~~ 332 (722)
.++..++...+.. +..+.....++.+ +++..+... ...+.+. .|++|
T Consensus 281 --~~~~~G~~~~~v~~g~~~~~ll~~~~~~~l~~~~~~~~d~~~q~~~~~~g~~~r~~~F~~~~~~~~l~~~~~d~~i~~ 358 (886)
T 2qtc_A 281 --IFEGAGWNVIKVMWGSRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYVREHFFGKYPETAALVADWTDEQIWA 358 (886)
T ss_dssp --HHHHTTCEEEEECBCTTHHHHHHHCSSCHHHHHHHHCCHHHHHHHTTSCHHHHHHHTSTTSHHHHTTTTTCCHHHHHT
T ss_pred --HHHhCCCCEEEEecchhHHHHHccCCchHHHHHHHhccchhhhhhhhccchHHHHhhcccchHHHHHHhhcChhhHhh
Confidence 2233333333221 1222222222222 222221111 0112222 38888
Q ss_pred EeecCCCCHHHHHHHHHHHHhcCCCCCEEEEEEeeccCCCcccccccchhhccCCCC---------------C-------
Q 004946 333 IGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTEENRRAEDTQKSEAIEKQQEGAS---------------D------- 390 (722)
Q Consensus 333 ~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kG~G~~~ae~~~~~~~~H~~~~---------------~------- 390 (722)
. ++||||+++|.++++++++. .++|++||++|.||+|+++++. ++.++|++.+ +
T Consensus 359 l-~~dGhD~~~l~~a~~~A~~~-~~~PtlI~~~T~KG~G~~~~~e--~~~~~H~~~~l~~~~~~~~r~~~~~~~~~e~~~ 434 (886)
T 2qtc_A 359 L-NRGGHDPKKIYAAFKKAQET-KGKATVILAHTIKGYGMGDAAK--GKNIAHQVKKMNMDGVRHIRDRFNVPVSDADIE 434 (886)
T ss_dssp C-CBGGGCHHHHHHHHHHHHHC-CSSCEEEEEECCTTTTCTTCC---------------CHHHHHHHHHTTCSCCHHHHT
T ss_pred c-ccCCCCHHHHHHHHHHHHHc-CCCCEEEEEeeeeccccchhhc--CCccccCCCCCCHHHHHHHHHHcCCCCChhhhc
Confidence 8 99999999999999999985 3689999999999999987765 6889998741 0
Q ss_pred ------CC-----------------CC-C-----------CC------------CCccchHHHHHHHHHHHHhcC---CC
Q 004946 391 ------SN-----------------SL-P-----------FG------------NYSRTYDDCFIEALVMEAEKD---KD 420 (722)
Q Consensus 391 ------~t-----------------g~-~-----------~~------------~~~~s~~~a~~~~L~~~~~~d---~~ 420 (722)
.+ |. + .+ ....+++++|+++|.++++++ ++
T Consensus 435 ~~~f~~~~~~~~~~~~~~~r~~~l~g~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~atr~afg~~L~~l~~~~~~~~~ 514 (886)
T 2qtc_A 435 KLPYITFPEGSEEHTYLHAQRQKLHGYLPSRQPNFTEKLELPSLQDFGALLEEQSKEISTTIAFVRALNVMLKNKSIKDR 514 (886)
T ss_dssp TCCCCCCCTTSHHHHHHHHHHHHTTSCSSCCCCSCCSCCCCCCGGGGHHHHSCCSSCBCHHHHHHHHHHHHTTCTTTTTT
T ss_pred cccccCCccchHHHHHHHHHHHHhcccCcchhhhhhhcccCCchhhhhhhccCCCCcchHHHHHHHHHHHHHhhcccCCc
Confidence 01 10 0 00 123578999999999999998 99
Q ss_pred EEEEecCCC---Cc------cc-----hHHHH-----------HhCCCceeecccchHHH-H---HHHHHHhcCC--Cee
Q 004946 421 IVVVHAGME---MD------LS-----LQLFQ-----------EKFPERYFDVGMAEQHA-V---TFSAGLACGG--LKP 469 (722)
Q Consensus 421 iv~i~ad~~---~~------~~-----l~~f~-----------~~~p~R~~d~GIaE~~a-v---~~AaGlA~~G--~~p 469 (722)
||++++|+. |+ ++ ...|. +.||+||||+||+|++| + ++|+|+|+.| ++|
T Consensus 515 iV~i~pd~~~~~G~~dl~~S~~i~~~~~~~f~~~d~~~~~~~~e~~~~R~~d~GIaE~~a~~~~~g~a~GlA~~G~~~~P 594 (886)
T 2qtc_A 515 LVPIIADEARTFGMEGLFRQIGIYSPNGQQYTPQDREQVAYYKEDEKGQILQEGINELGAGCSWLAAATSYSTNNLPMIP 594 (886)
T ss_dssp EEEEESSCSGGGTCHHHHHHHCBBCC-----------------CBTTCCBEECCSCHHHHHHHHHHHHTHHHHTSCCCEE
T ss_pred EEEEcCccccccCcccccccccccccCCcccccccchhhhhhhhcCCCceeeeccCchhhhhHHHHHHHHHHhcCCCceE
Confidence 999999944 32 22 24454 67899999999999996 5 6999999999 899
Q ss_pred EEEecHhh-HHHHHHHHHHHHhcCCCCEEEEEeCCCc-cCCCCCCcCcHHHHHHhcCCCCcEEEeeCCHHHHHHHHHHHh
Q 004946 470 FCIIPSAF-LQRAYDQVVNDVDQQRLPVRFVITSAGL-VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVA 547 (722)
Q Consensus 470 ~~~t~~~F-l~ra~dqi~~~~a~~~lpVv~v~~~~G~-~G~dG~TH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~a~ 547 (722)
|+.+|++| +||++||+++++++++.++++..+..+. +|+||+|||+.+|+++++++||++|++|+|+.|++.++++|+
T Consensus 595 ~~~~ys~F~~qRa~Dqi~~~~d~~~~~v~l~~~~~~~~~g~dG~tHq~~~~~a~lr~iPnl~V~~Pada~E~~~~l~~al 674 (886)
T 2qtc_A 595 FYIYYSMFGFQRIGDLCWAAGDQQARGFLIGGTSGRTTLNGEGLQHEDGHSHIQSLTIPNCISYDPAYAYEVAVIMHDGL 674 (886)
T ss_dssp EEEEEGGGSHHHHHHHHHHHHHTTCCCEEEEESCSTTTSTTTCTTTCCSCHHHHHTTSTTEEEECCSSHHHHHHHHHHHH
T ss_pred EEEEehHHHHHHHHHHHHHHHHHhcCCEEEEEecCcccCCCCCCccCCcchHHHHhhCCCCEEEecCCHHHHHHHHHHHH
Confidence 99999999 8999999999999999999998764433 689999999999999999999999999999999999999999
Q ss_pred hhCCCC----EEEEecCCC--cccccCCCCCCCCccccccEEEEEeC----CcEEEEEechhhHHHHHHHHHHHhc-CCc
Q 004946 548 SIDDRP----VCFRYPRGA--IVRTDLPGYRGIPIEEIGKGKVLVEG----KDVALLGYGAMVQNCLKARALLSKL-GID 616 (722)
Q Consensus 548 ~~~~~P----v~ir~~r~~--~~~~~~p~~~~~~~~~igk~~vl~eG----~dv~lva~Gs~v~~aleAa~~L~~~-Gi~ 616 (722)
+..++| ++++++|++ .....+|.. .... .+++++++++| +||+||++|++++.|++|++.|+++ ||+
T Consensus 675 ~~~~gP~~e~v~i~~~r~~~~~~~p~~~~~-~~~~-~~gga~vlr~g~~~~~dVtLia~G~~v~~al~AAe~L~~e~GI~ 752 (886)
T 2qtc_A 675 ERMYGEKQENVYYYITTLNENYHMPAMPEG-AEEG-IRKGIYKLETIEGSKGKVQLLGSGSILRHVREAAEILAKDYGVG 752 (886)
T ss_dssp HHHHSTTCCCCEEEEECCSCCBCCCCCCTT-CHHH-HHHTCEEEEEECCSSEEEEEEECGGGHHHHHHHHHHHHHHHCEE
T ss_pred HhcCCCCCceEEEEEeCCccccCCCCCCcc-hhhh-ccCceEEEEecCCCCCCEEEEeCcHHHHHHHHHHHHHhhhhCCc
Confidence 866789 999999975 211122321 1111 26888999987 7999999999999999999999998 999
Q ss_pred EEEeecCccccchHHH-------------------HHHHhcCCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEE
Q 004946 617 VTVADARFCKPLDIKL-------------------VRELCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPI 677 (722)
Q Consensus 617 v~Vidl~~lkPld~e~-------------------i~~~~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~v~~i 677 (722)
++|||++|++|||+++ +.+.+.. +.+|++|++.. |+++.+..++. ..+++++
T Consensus 753 a~Vvd~~sl~pLD~e~i~~~kt~rl~p~~~~~~~~~e~~l~~-~~vVa~ed~~~-g~~~~~~~~~~-------~~~~~~l 823 (886)
T 2qtc_A 753 SDVYSVTSFTELARDGQDCERWNMLHPLETPRVPYIAQVMND-APAVASTDYMK-LFAEQVRTYVP-------ADDYRVL 823 (886)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHHHHCTTSCCCCCHHHHHCCS-SCEEEECSSCT-HHHHTTGGGCC-------SSCEEEE
T ss_pred eEEEECCcCcccchHHHHHhhhcccCccccccHHHHHHhcCC-CCEEEEEeccc-chHHHHHHHcC-------CCCeEEE
Confidence 9999999999999985 4555656 67888998876 56655544331 1577889
Q ss_pred ecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHhhc
Q 004946 678 VLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGR 713 (722)
Q Consensus 678 g~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~ll~~ 713 (722)
|+ |.|+.+|+++++++++|||+++|++++++++..
T Consensus 824 G~-D~Fg~sg~~~~L~~~~Gld~e~Iv~~a~~~L~~ 858 (886)
T 2qtc_A 824 GT-DGFGRSDSRENLRHHFEVDASYVVVAALGELAK 858 (886)
T ss_dssp CC-CSCCCCCCHHHHHHHTTCSHHHHHHHHHHHHHH
T ss_pred Ee-CCCCCCCCHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 99 999999999999999999999999999998853
No 15
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Probab=100.00 E-value=5.4e-65 Score=593.43 Aligned_cols=527 Identities=12% Similarity=0.095 Sum_probs=417.0
Q ss_pred CCCCCCCcchHHHHHHHHhhccC-CCCcE-EEecCCchH---HHHHHHhCch-----------hhhhH-HHhhC---CCC
Q 004946 117 TEKSLKSSLAAVELTVALHHVFH-APVDK-ILWDVGEQT---YAHKILTGRR-----------SLIHT-LRKKD---GIS 176 (722)
Q Consensus 117 ~gGh~~~slg~vel~~aL~~vf~-~p~D~-iv~d~GH~~---y~h~~ltGr~-----------~~~~~-~r~~g---gl~ 176 (722)
.+||+|+++|++++.+.+..+.. ..+|+ ||+++||.+ |+...+.|.. +.|.. +||+. |+.
T Consensus 81 ~sGH~G~~~g~a~iy~~~~~~~~~~~rDr~fvls~GHg~p~lYa~l~l~G~~~~~~p~~s~d~e~Lk~lfrqfs~~gg~p 160 (845)
T 3ahc_A 81 LVGHWGTTPGLNFLLAHINRLIADHQQNTVFIMGPGHGGPAGTSQSYVDGTYTEYYPNITKDEAGLQKFFRQFSYPGGIP 160 (845)
T ss_dssp CCSCCTTHHHHHHHHHHHHHHHHHHTBCBCCEESSGGGHHHHHHHHHHHTHHHHHCTTSCSSHHHHHHHHHHBTCTTSBC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcccCCCceEEEECcCcHHHHHHHHHHHcCCCccccccccccHHHHHHHHHhccCCCCCC
Confidence 47999999999998543333321 25899 799999999 9999999973 45655 67764 488
Q ss_pred CCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccch---HHHHHHHhhhcC-CCEEEEEECC
Q 004946 177 GYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQ---AYEAMSNAGYLD-SNMIVILNDS 252 (722)
Q Consensus 177 g~~~~~es~~d~~~~G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~---~~EAln~A~~~~-~plivIv~dN 252 (722)
|||.+ +.|+....+|++|++++.|+|||+ .+++.+|+|++|||+.++|. .||+.+++..++ .||++|+++|
T Consensus 161 gHp~~-~tpGve~~tG~LGqGls~AvG~A~----~~~~~~v~~~~GDGe~e~GsLAg~wea~~~~~~~~l~nl~~i~D~N 235 (845)
T 3ahc_A 161 SHFAP-ETPGSIHEGGELGYALSHAYGAVM----NNPSLFVPCIIGDGEAETGPLATGWQSNKLVNPRTDGIVLPILHLN 235 (845)
T ss_dssp SSCCT-TSTTCSCCCSSTTCHHHHHHHHHT----TCTTCEEEEEEETTGGGSHHHHHHGGGGGSCCTTTSCEEEEEEEEC
T ss_pred CCCCC-CCCCeecCCCCccchHhHHhhhhh----cCCCCeEEEEECCCchhhhcchhhhHHhhhhhhhcCCCEEEEEECC
Confidence 88864 678888899999999999999995 46789999999999999999 999999999988 8999999999
Q ss_pred CCCCCCCccCCCCcchhhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceE
Q 004946 253 RHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYY 332 (722)
Q Consensus 253 ~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~ 332 (722)
+++ ++.+.- + .+. +. ++ ...+|++|||++
T Consensus 236 ~~~--------i~g~t~-l----~~~----------------------~~-------e~---------l~~rf~a~Gw~v 264 (845)
T 3ahc_A 236 GYK--------IANPTI-L----ARI----------------------SD-------EE---------LHDFFRGMGYHP 264 (845)
T ss_dssp SBS--------SSSBCH-H----HHS----------------------CH-------HH---------HHHHHHHTTEEE
T ss_pred CCc--------CCCCcc-c----ccc----------------------Cc-------HH---------HHHHHHHCCCEE
Confidence 983 222221 0 000 00 01 145899999999
Q ss_pred EeecCC-C--CHHHHHHHHHH---------------HHhcCCCCC--EEEEEEeeccC-------CCcccccccchhhcc
Q 004946 333 IGPVDG-H--NIEDLISVLQE---------------VASLGSMGP--VLVHVVTEENR-------RAEDTQKSEAIEKQQ 385 (722)
Q Consensus 333 ~~~vdG-h--d~~~l~~al~~---------------a~~~~~~~P--~lI~v~T~kG~-------G~~~ae~~~~~~~~H 385 (722)
+..||| | |++++.+++++ ++....++| ++|+++|.||| |. +.|+ ..++|
T Consensus 265 ~~~vdG~~~~D~~~i~~a~~~al~~~~~~i~~i~~~A~~~~~~kP~w~~Ii~rT~kG~tgp~~~~G~-~~eg---~~~~H 340 (845)
T 3ahc_A 265 YEFVAGFDNEDHMSIHRRFAELFETIFDEICDIKAAAQTDDMTRPFYPMLIFRTPKGWTCPKFIDGK-KTEG---SWRAH 340 (845)
T ss_dssp EEEECSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCEEEEEEECCTTTTSCSEETTE-ECTT---SGGGS
T ss_pred eEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEECcccCCCCCCCCCc-ccCC---Ccccc
Confidence 767899 9 99988877542 222113689 99999999999 98 4664 78999
Q ss_pred CCCCCCCC----------------C-------------------C-----------------CC----C-----------
Q 004946 386 EGASDSNS----------------L-------------------P-----------------FG----N----------- 398 (722)
Q Consensus 386 ~~~~~~tg----------------~-------------------~-----------------~~----~----------- 398 (722)
++++.... + + .+ +
T Consensus 341 ~~pl~~~~~~~~~~~~l~~wl~~~~p~elF~~~~~~~~~~~~~~~~g~~r~~~~P~~~~g~l~~~~~lp~~~~~~~~~~~ 420 (845)
T 3ahc_A 341 QVPLASARDTEEHFEVLKGWMESYKPEELFNADGSIKDDVTAFMPKGELRIGANPNANGGVIREDLKLPELDQYEVTGVK 420 (845)
T ss_dssp SCSCTTTTTCHHHHHHHHHHHHHTCGGGTBCTTSCBCHHHHTTSCCGGGSTTTCGGGGGGGTCCCCCCCCGGGGCCTHHH
T ss_pred CCCCCCcccCHHHHHHHhhhccCCCchhccCCchHHHHHHHHhCcchHhHhhhCHHhcCCcCccccCCCChHhhhccccc
Confidence 98762210 0 0 00 0
Q ss_pred ----C--ccchHHHHHHHHHHHHhcCCC-EEEEecCCCCccchHHHHHh---------C--C--------Cceeecccch
Q 004946 399 ----Y--SRTYDDCFIEALVMEAEKDKD-IVVVHAGMEMDLSLQLFQEK---------F--P--------ERYFDVGMAE 452 (722)
Q Consensus 399 ----~--~~s~~~a~~~~L~~~~~~d~~-iv~i~ad~~~~~~l~~f~~~---------~--p--------~R~~d~GIaE 452 (722)
. ...-+.+++++|.++++.+|+ ++++++|+.+|+.+..|.+. + | +|||+ ||+|
T Consensus 421 ~~~~g~~~~~atra~g~~L~~l~~~~p~~~vv~sADl~~Sn~t~~f~~~t~~~~~~~~~~~P~d~~~~~~GR~i~-GI~E 499 (845)
T 3ahc_A 421 EYGHGWGQVEAPRALGAYCRDIIKNNPDSFRIFGPDETASNRLNATYEVTDKQWDNGYLSGLVDEHMAVTGQVTE-QLSE 499 (845)
T ss_dssp HHCTTEEEECTHHHHHHHHHHHHHHSTTTEEEEESSCTTTTTCGGGGGTCCEECCSCCCCTTTCCSEESSCSEEE-CSCH
T ss_pred cccCCccchhHHHHHHHHHHHHHHhCCCcEEEEecCCCccccHHHHHhhcccccccccccCCcccccCCCCcEee-eecH
Confidence 0 012367889999999999999 99999999999999888877 7 7 89999 9999
Q ss_pred HHHHHHHHHHhcCCCeeEEEecHhhH---HHHHHH----HHHHHhcC----CC-CEEEEEeCCCc-cCCCCCCcCc--HH
Q 004946 453 QHAVTFSAGLACGGLKPFCIIPSAFL---QRAYDQ----VVNDVDQQ----RL-PVRFVITSAGL-VGSDGPTQCG--AF 517 (722)
Q Consensus 453 ~~av~~AaGlA~~G~~p~~~t~~~Fl---~ra~dq----i~~~~a~~----~l-pVv~v~~~~G~-~G~dG~TH~~--~~ 517 (722)
|+|+++++|+|+.|..||+.+|++|+ .|+++| |+..++++ .+ +|+++.++.|+ +|+||+|||+ ..
T Consensus 500 h~M~gia~Glal~G~~~f~~t~atFl~~~~~a~~q~akwiR~a~a~~~wr~~~~~v~~v~Th~si~~GeDGpTHQ~~e~~ 579 (845)
T 3ahc_A 500 HQCEGFLEAYLLTGRHGIWSSYESFVHVIDSMLNQHAKWLEATVREIPWRKPISSVNLLVSSHVWRQDHNGFSHQDPGVT 579 (845)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEHHHHGGGHHHHHHHHHHHHHHHHHCTTSCCCBCEEEEEESCGGGCTTTCGGGCCCTHH
T ss_pred HHHHHHHHHHHhcCCCCceecchhhhchhhhHHHHHHHHHHhhHHhhhhcccCCceEEEEeCCceeecCCCCCCCCcHHH
Confidence 99999999999999999999999988 899999 77664554 45 69999999999 8999999999 67
Q ss_pred HHHHhc---CCCCcEEEeeCCHHHHHHHHHHHhhhCCCCEEEEecCCCcccccCCCCCCC---CccccccEEEE---Ee-
Q 004946 518 DITFMS---CLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRYPRGAIVRTDLPGYRGI---PIEEIGKGKVL---VE- 587 (722)
Q Consensus 518 d~a~~~---~iP~l~V~~Psd~~E~~~~l~~a~~~~~~Pv~ir~~r~~~~~~~~p~~~~~---~~~~igk~~vl---~e- 587 (722)
|+..++ .+||+.||.|+|++|+..+++.|++..+.|.+++++|++.+.. .. .+. .+ ..|++.+. ++
T Consensus 580 d~l~~~r~~~iPn~~V~~PaDanet~~a~~~al~~~~~~~v~v~sRq~~p~~--~~-~~~a~~~~-~~G~~v~~~as~d~ 655 (845)
T 3ahc_A 580 SLLINKTFNNDHVTNIYFATDANMLLAISEKCFKSTNKINAIFAGKQPAPTW--VT-LDEARAEL-EAGAAEWKWASNAE 655 (845)
T ss_dssp HHHGGGCCTTCCCEEEEECCSHHHHHHHHHHHHHCBSCEEEEECCCSCEEEC--SC-HHHHHHHH-HHSEEECTTTCCCS
T ss_pred HHHHHhhccCCCCeEEEeCCCHHHHHHHHHHHHHcCCCeEEEEecCCCCCcc--CC-chhhhhhh-cCCeEEEEeecccc
Confidence 766666 7899999999999999999999998655566666699985542 11 111 23 45555554 35
Q ss_pred -C--CcEEEEEechhh-HHHHHHHHHHHhcCCcEEEeecCcc---ccchHHHHHHHhcCCCeEEEEcCCC---CCChHHH
Q 004946 588 -G--KDVALLGYGAMV-QNCLKARALLSKLGIDVTVADARFC---KPLDIKLVRELCQNHTFLITVEEGS---IGGFGSH 657 (722)
Q Consensus 588 -G--~dv~lva~Gs~v-~~aleAa~~L~~~Gi~v~Vidl~~l---kPld~e~i~~~~~~~~~vvvvEe~~---~gG~gs~ 657 (722)
| .||+|+++|+++ .+|++|+++|+++||+++|||+.++ +|.|++.+....+.++.|+|+|++. .||+++.
T Consensus 656 ~g~~~DVvLiAtGsev~~EAL~AA~~L~~~GI~vRVVsm~~lf~lqp~~~~~~~ls~~~~~~l~T~e~h~i~~~gGlgsa 735 (845)
T 3ahc_A 656 NNDEVQVVLASAGDVPTQELMAASDALNKMGIKFKVVNVVDLLKLQSRENNDEALTDEEFTELFTADKPVLFAYHSYAQD 735 (845)
T ss_dssp STTTCSEEEEEESHHHHHHHHHHHHHHHHTTCCEEEEEECBGGGGSCTTTCTTSCCHHHHHHHHCSSSCEEEEESSCHHH
T ss_pred cCCCCCEEEEEeccHHHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCccccccccCHHHhCcEeecCCcceeeecCcHHH
Confidence 5 899999999776 5599999999999999999999999 6665544322334456788889886 3999999
Q ss_pred HHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHhh
Q 004946 658 VSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLG 712 (722)
Q Consensus 658 v~~~l~~~~~~~~~~~v~~ig~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~ll~ 712 (722)
|++.+.++. .+.++.++|++| |+.+|++.++++++|||.++|++++++++.
T Consensus 736 V~ell~~r~---~~~~l~v~G~~d-~G~tgtp~eLl~~~gld~~~Iv~~a~~~l~ 786 (845)
T 3ahc_A 736 VRGLIYDRP---NHDNFHVVGYKE-QGSTTTPFDMVRVNDMDRYALQAAALKLID 786 (845)
T ss_dssp HHHHTTTST---TGGGEEEECCCS-CCCSCCHHHHHHTTTCSHHHHHHHHHHHHH
T ss_pred HHHHHHhCC---CCceEEEEeccC-CCCCCCHHHHHHHhCcCHHHHHHHHHHHcc
Confidence 999998762 145899999998 999999999999999999999999999886
No 16
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=100.00 E-value=2e-60 Score=567.13 Aligned_cols=550 Identities=14% Similarity=0.096 Sum_probs=394.4
Q ss_pred cCCCHHHHHHHHHH---HHHHHHHhHhc-CCCCCCCcchHHHHHHHHhhccC-----CCCcEEEecCCchHHHHHHH--h
Q 004946 92 KSLTIKELKQLAVE---IRSELSSIVSK-TEKSLKSSLAAVELTVALHHVFH-----APVDKILWDVGEQTYAHKIL--T 160 (722)
Q Consensus 92 ~~l~~~~l~~la~e---iR~~ii~~~~~-~gGh~~~slg~vel~~aL~~vf~-----~p~D~iv~d~GH~~y~h~~l--t 160 (722)
.+++.+++.++.+. +|.+--.+..+ .+|-.-+..|+-.+..++.+.++ .++|.++. ..|+.+.+.+. .
T Consensus 193 ~~~s~e~~~~~y~~m~~~r~fE~~l~~~~~~gkrf~~~G~Ea~i~g~~~~~~~a~~~g~~D~v~g-~~hRg~~~~Lan~~ 271 (933)
T 2jgd_A 193 ATFNSEEKKRFLSELTAAEGLERYLGAKFPGAKRFSLEGGDALIPMLKEMIRHAGNSGTREVVLG-MAHRGRLNVLVNVL 271 (933)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCCTTCTTHHHHHHHHHHHHHTTTCCEEEEE-CCSTTHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCchHHHHHHHHHHHHHhhCCCCCEEec-CCCcCHHHHHHHHh
Confidence 46788887777554 34433333332 23322234565333333333222 35777762 37999999888 6
Q ss_pred CchhhhhHHHhh-CCCCCCCCCCC-CCC-----------------CCcCcCCCcchHHHHHHHHHHHHHcC-----CCCe
Q 004946 161 GRRSLIHTLRKK-DGISGYTSRSE-SEY-----------------DPFNAGHGCNSVSAGLGMAVARDIKG-----KREC 216 (722)
Q Consensus 161 Gr~~~~~~~r~~-ggl~g~~~~~e-s~~-----------------d~~~~G~~G~~ls~A~G~A~A~~l~~-----~~~~ 216 (722)
|... -..+.++ |...|...... +.| ..+..||+|+++|+|+|+|+|+++++ .+..
T Consensus 272 G~~~-~~i~~e~~G~~~g~~g~gdv~~Hlg~~~~~~~~gg~~~l~l~~~~shlg~~~p~A~G~A~A~~~~~~~~~~~~~~ 350 (933)
T 2jgd_A 272 GKKP-QDLFDEFAGKHKEHLGTGDVKYHMGFSSDFQTDGGLVHLALAFNPSHLEIVSPVVIGSVRARLDRLDEPSSNKVL 350 (933)
T ss_dssp CCCH-HHHHHHHHTCC--CCSCCCCGGGCCEEEEEEETTEEEEEEECCCCSSTTCHHHHHHHHHHHHHTTSSSCCGGGEE
T ss_pred CCCH-HHHHHHhcCCCCCCCCCCCccccCCcccccccCCCceEEeecccCcccccccCHHHHHHHHHHhhccccCCCCeE
Confidence 7522 1223333 32233221111 111 13667999999999999999999874 6789
Q ss_pred EEEEecCCCc-ccchHHHHHHHhhhcCCC---EEEEEECCCCCCCCCccCCCCc-chhhhhhhhhhhhhhhHHHHHHHHH
Q 004946 217 IVTVISNGTT-MAGQAYEAMSNAGYLDSN---MIVILNDSRHSLHPKIEESPKT-SINALSSTLSRIQSSKSFRQLREVA 291 (722)
Q Consensus 217 Vv~viGDGa~-~~G~~~EAln~A~~~~~p---livIv~dN~~~s~~t~~~~~~~-~~g~l~~~l~~~~~~~~~~~~r~~~ 291 (722)
+||++|||++ ++|++|||||+|+.+++| +|+||+||+++ +++ +++..
T Consensus 351 vv~v~GDGa~a~qG~~~Ealn~A~~~~lp~gg~I~vv~nN~~~--------ist~~~~~~-------------------- 402 (933)
T 2jgd_A 351 PITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQVG--------FTTSNPLDA-------------------- 402 (933)
T ss_dssp EEEEEEHHHHHHCTHHHHHHHHTTSTTTCCSCCEEEEEECC---------------------------------------
T ss_pred EEEEECCcccccCCHHHHHHHHhhccCCCCCceEEEEEeCCcc--------ccCCCHHhc--------------------
Confidence 9999999998 899999999999999999 99999999973 222 22200
Q ss_pred hhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhc--CCCCCEEEEEEeecc
Q 004946 292 KGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASL--GSMGPVLVHVVTEEN 369 (722)
Q Consensus 292 ~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~--~~~~P~lI~v~T~kG 369 (722)
..++....+++++||.++ .|||+|++++.++++++++. ...+|++|++.|.++
T Consensus 403 ------------------------~~~~~~~~~a~a~g~p~~-~VdG~D~~av~~a~~~A~e~~r~~~~P~lIe~~tyR~ 457 (933)
T 2jgd_A 403 ------------------------RSTPYCTDIGKMVQAPIF-HVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRR 457 (933)
T ss_dssp ----------------------------CGGGGGGTTTCCEE-EEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_pred ------------------------ccchhHHHHHHHcCCCEE-EECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEeeeee
Confidence 000112457899999998 78999999999999887641 137899999999999
Q ss_pred CCCccccc-------------------------------------------------------cc------chhhccCCC
Q 004946 370 RRAEDTQK-------------------------------------------------------SE------AIEKQQEGA 388 (722)
Q Consensus 370 ~G~~~ae~-------------------------------------------------------~~------~~~~~H~~~ 388 (722)
+|...... .+ ....||++.
T Consensus 458 ~GH~~~D~~~yr~~~e~~~~~~~~dPi~~~~~~Li~~Gv~t~~~~~~i~~~~~~~v~~a~~~A~~~~p~~~~~~~~~~~~ 537 (933)
T 2jgd_A 458 HGHNEADEPSATQPLMYQKIKKHPTPRKIYADKLEQEKVATLEDATEMVNLYRDALDAGDCVVAEWRPMNMHSFTWSPYL 537 (933)
T ss_dssp C-----------CCTTHHHHHTSCCHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHTSCCCTTEECCCGGGCTTGGGS
T ss_pred cCcCcccchhhCCHHHHHHHHccCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhccccc
Confidence 88532210 00 012355543
Q ss_pred C------CCCCCCCC-----------------------------------CCccchHHHHHHHHHHHHhcCCCEEEEecC
Q 004946 389 S------DSNSLPFG-----------------------------------NYSRTYDDCFIEALVMEAEKDKDIVVVHAG 427 (722)
Q Consensus 389 ~------~~tg~~~~-----------------------------------~~~~s~~~a~~~~L~~~~~~d~~iv~i~ad 427 (722)
+ ..||...+ ....+|..+++.+|.+++++|++|+++++|
T Consensus 538 ~~~~~~~~~tg~~~~~l~~i~~~~~~~p~~~~~~~~v~~~~~~R~~~~~~~~~~dw~~~e~~al~~l~~~~~~V~~~g~D 617 (933)
T 2jgd_A 538 NHEWDEEYPNKVEMKRLQELAKRISTVPEAVEMQSRVAKIYGDRQAMAAGEKLFDWGGAENLAYATLVDEGIPVRLSGED 617 (933)
T ss_dssp SCCTTCCCCCCCCHHHHHHHHHHTTCCCTTSCCCHHHHHHHHHHHHHHTTSSCBCHHHHHHHHHHHHHTTTCCEEEEETT
T ss_pred ccccccCCCCCCCHHHHHHHHhhhcCCCCCCcccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhcCCCEEEECCc
Confidence 2 12332100 013568899999999999999999999999
Q ss_pred CCCc------------------cchHHHHHhC-CCceeecccchHHHHHHHHHHhcCCCe--eEEE-ecHhhHH---HHH
Q 004946 428 MEMD------------------LSLQLFQEKF-PERYFDVGMAEQHAVTFSAGLACGGLK--PFCI-IPSAFLQ---RAY 482 (722)
Q Consensus 428 ~~~~------------------~~l~~f~~~~-p~R~~d~GIaE~~av~~AaGlA~~G~~--p~~~-t~~~Fl~---ra~ 482 (722)
|+.| +++..|.++| |+||||+||+|++++++|+|+|+.|.+ |+++ +|++|++ |++
T Consensus 618 v~~gTfs~rh~v~~d~~~g~~~~~l~~l~~~~gp~rv~ds~IaE~~~vg~a~G~A~~G~~~lpv~e~qf~dF~~~AQra~ 697 (933)
T 2jgd_A 618 SGRGTFFHRHAVIHNQSNGSTYTPLQHIHNGQGAFRVWDSVLSEEAVLAFEYGYATAEPRTLTIWEAQFGDFANGAQVVI 697 (933)
T ss_dssp TTTCTTSCCCCSEECSSSSCEECGGGCSCTTCCCEEEECCCSCHHHHHHHHHHHHHHCTTSEEEEEC-CGGGGGGGHHHH
T ss_pred cCCcchhhhhhhcccccCCceeechHHHHHHcCCCeEEECCcCHHHHHHHHHHHHhcCCCCCCEEEEEEhhhhcccHHHH
Confidence 9976 5578899999 999999999999999999999999998 9886 6999996 999
Q ss_pred HHHHHHH-h--cCCCCEEEEEeCCCccCCCCCCcCc--HHHHHHhcCCCCcEEEeeCCHHHHHHHHHHHhhhC-CCCEEE
Q 004946 483 DQVVNDV-D--QQRLPVRFVITSAGLVGSDGPTQCG--AFDITFMSCLPNMIVMAPSDEDELVDMVATVASID-DRPVCF 556 (722)
Q Consensus 483 dqi~~~~-a--~~~lpVv~v~~~~G~~G~dG~TH~~--~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~~-~~Pv~i 556 (722)
||+++++ + .+++||++++++ |..| .|++||+ .+++..++++|||+|++|+|+.|++.||++++... ++|++|
T Consensus 698 DQii~~~~ak~~~~~~vv~~l~~-G~~g-~G~~Hss~~~E~~l~~~~~pnm~V~~Pst~~e~~~lLr~a~~~~~~~Pvii 775 (933)
T 2jgd_A 698 DQFISSGEQKWGRMCGLVMLLPH-GYEG-QGPEHSSARLERYLQLCAEQNMQVCVPSTPAQVYHMLRRQALRGMRRPLVV 775 (933)
T ss_dssp HHTTTTHHHHHCCCCCCEEEEEC-CCSS-SCTTSSCCCHHHHHHTCCTTCCEEECCCSHHHHHHHHHHHHHSSCCCCEEE
T ss_pred HHHHHHHHHHHccCCCEEEEEeC-CCCC-CCcccccchHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHHHhcCCCcEEE
Confidence 9999998 7 469999999998 5455 4999999 56655566779999999999999999999995333 799999
Q ss_pred EecCCCccc-ccCCC-----CCCCCccccccEEEEEeCCcE--EEEEechhhHHHHHHHHHHHhcCCcEEEeecCccccc
Q 004946 557 RYPRGAIVR-TDLPG-----YRGIPIEEIGKGKVLVEGKDV--ALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPL 628 (722)
Q Consensus 557 r~~r~~~~~-~~~p~-----~~~~~~~~igk~~vl~eG~dv--~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPl 628 (722)
|+||..... ..++. ...+.+ ++|++.+++ |+|| +|+++|.+...+++|++.|+++ +++|||+++|+||
T Consensus 776 ~~pk~l~r~~~~~~~~~~~~~~~f~~-~ig~~~~~~-g~dV~~vI~~~G~v~~~l~aa~~~l~~~--~v~VIdl~~l~Pl 851 (933)
T 2jgd_A 776 MSPKSLLRHPLAVSSLEELANGTFLP-AIGEIDELD-PKGVKRVVMCSGKVYYDLLEQRRKNNQH--DVAIVRIEQLYPF 851 (933)
T ss_dssp EECSGGGGCTTCCBCHHHHHHCCCCS-EECCCSCCC-GGGCCEEEEECTTHHHHHHHHHHHTTCC--SEEEEEECEEESC
T ss_pred EecchhccCCCCcCCccccCCCceee-cCCcceEee-cCcceEEEEEchHHHHHHHHHHHHcccC--CeEEEEeeccCCC
Confidence 999986321 11110 012345 788887777 8899 7777777777777777888654 8999999999999
Q ss_pred hHHHHHHHhcCCC---eEEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCcccc-CCCHHHHHHHcCCCHHHH
Q 004946 629 DIKLVRELCQNHT---FLITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIE-HASPTQQLALAGLTGHHI 703 (722)
Q Consensus 629 d~e~i~~~~~~~~---~vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~v~~ig~~d~f~~-~g~~~~l~~~~gl~~~~I 703 (722)
|.+.|.+++++++ .||++||+. .||+|++|++++.+.++. ..+++++|.||.|.+ .|...... ...+.|
T Consensus 852 d~e~i~~~~~k~~~~~~vv~veE~~~~gG~g~~v~~~l~~~~~~--~~~v~~vg~~d~~~pa~g~~~~h~----~~~~~i 925 (933)
T 2jgd_A 852 PHKAMQEVLQQFAHVKDFVWCQEEPLNQGAWYCSQHHFREVIPF--GASLRYAGRPASASPAVGHMSVHQ----KQQQDL 925 (933)
T ss_dssp CHHHHHHHHGGGTTCCEEEEEEEEETTSTTHHHHHHHHHTTSCT--TCEEEEEEECCCSSSSCSCHHHHH----HHHHHH
T ss_pred CHHHHHHHHHhCCCCceEEEEecCCCcCCHHHHHHHHHHHhccc--CCceEEEecCCcCCCCcCCHHHHH----HHHHHH
Confidence 9999999999987 899999987 699999999999887642 368999999999998 45433322 345667
Q ss_pred HHHHH
Q 004946 704 AATAL 708 (722)
Q Consensus 704 ~~~i~ 708 (722)
++.+.
T Consensus 926 ~~~a~ 930 (933)
T 2jgd_A 926 VNDAL 930 (933)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 76654
No 17
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=100.00 E-value=1.9e-61 Score=527.64 Aligned_cols=335 Identities=22% Similarity=0.290 Sum_probs=244.2
Q ss_pred EeeccCCCcc-cccccchhhccCCCC-CCCCCCCC--C---CccchHHHHHHHHHHHHhcCCCEEEEecCCCCcc----c
Q 004946 365 VTEENRRAED-TQKSEAIEKQQEGAS-DSNSLPFG--N---YSRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDL----S 433 (722)
Q Consensus 365 ~T~kG~G~~~-ae~~~~~~~~H~~~~-~~tg~~~~--~---~~~s~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~----~ 433 (722)
.|.|||||.| +|. +.++||+..| ++||++.+ . ...+|+++|+++|.+++++|++|+++++|++.+. .
T Consensus 10 ~t~kg~g~~~~a~~--~~~~~h~~~pf~~~g~~~~~~~~~m~~~~~~~a~~~aL~~l~~~d~~vv~~~~D~~~~~g~~~~ 87 (369)
T 1ik6_A 10 LVPRGSGMKETAAA--KFERNHMDSPDLGTDDDDKMVAGVVMMANMAKAINMALHEEMERDERVVVLGEDVGKKGGVFLV 87 (369)
T ss_dssp ------------------------------------CCSCEEEECHHHHHHHHHHHHHHHCTTEEEEEC---------CT
T ss_pred CCCCCCCCCcchhh--chhhhcccCCcCCCCCcccccccccCcccHHHHHHHHHHHHHccCCCEEEECCcccccCCcchh
Confidence 6999999999 987 7899999998 77886433 1 4568999999999999999999999999998322 2
Q ss_pred hHHHHHhC-CCceeecccchHHHHHHHHHHhcCCCeeEEE-ecHhhHHHHHHHHHHHHhcC--------CCCEEEEEeCC
Q 004946 434 LQLFQEKF-PERYFDVGMAEQHAVTFSAGLACGGLKPFCI-IPSAFLQRAYDQVVNDVDQQ--------RLPVRFVITSA 503 (722)
Q Consensus 434 l~~f~~~~-p~R~~d~GIaE~~av~~AaGlA~~G~~p~~~-t~~~Fl~ra~dqi~~~~a~~--------~lpVv~v~~~~ 503 (722)
+..|+++| |+||||+||+|++|+++|+|+|+.|+|||++ +|++|++|++|||++++|++ ++||+++++++
T Consensus 88 ~~~~~~~~gp~r~~d~gIaE~~~v~~a~G~A~~G~rpv~~~tf~~Fl~~a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~g 167 (369)
T 1ik6_A 88 TEGLYERFGPERVIDTPLNEGGILGFAMGMAMAGLKPVAEIQFVDFIWLGADELLNHIAKLRYRSGGNYKAPLVVRTPVG 167 (369)
T ss_dssp TTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEECCCC----CCHHHHHHHHHHHHC------CCCCEEEEEEC
T ss_pred HHHHHHHhCCCcEEECcccHHHHHHHHHHHHHCCCeeEEEecchhHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEeCC
Confidence 68899999 9999999999999999999999999999998 69999999999999999987 99999999999
Q ss_pred CccCCCCCCcCcHHHHHHhcCCCCcEEEeeCCHHHHHHHHHHHhhhCCCCEEEEecCCCccc--ccCCCCCCCCcccccc
Q 004946 504 GLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASIDDRPVCFRYPRGAIVR--TDLPGYRGIPIEEIGK 581 (722)
Q Consensus 504 G~~G~dG~TH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~~~~Pv~ir~~r~~~~~--~~~p~~~~~~~~~igk 581 (722)
|.+| ||+|||+.++ ++++++|||+|++|+|++|+++++++|++ .++|++||+|+..... ..++. ..+.+ ++|+
T Consensus 168 g~~g-~g~~hs~~~~-a~l~~iPnl~V~~Psd~~e~~~ll~~A~~-~~~Pv~i~~p~~l~r~~~~~v~~-~~~~~-~~G~ 242 (369)
T 1ik6_A 168 SGTR-GGLYHSNSPE-AIFVHTPGLVVVMPSTPYNAKGLLKAAIR-GDDPVVFLEPKILYRAPREEVPE-GDYVV-EIGK 242 (369)
T ss_dssp C------------HH-HHHHTCTTCEEECCCSHHHHHHHHHHHHH-SSSCEEEEEEGGGSSCCCEEEEC-SSCCC-CTTC
T ss_pred CCCC-CCccccccHH-HHHcCCCCcEEEecCCHHHHHHHHHHHHh-CCCCEEEEEehhhhccCCCCcCC-Ccccc-cCCc
Confidence 8766 8999999875 99999999999999999999999999997 7899999999865321 12332 23446 7899
Q ss_pred EEEEEeCCcEEEEEechhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcCCCeEEEEcCCC-CCChHHHHHH
Q 004946 582 GKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-IGGFGSHVSH 660 (722)
Q Consensus 582 ~~vl~eG~dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~~~vvvvEe~~-~gG~gs~v~~ 660 (722)
++++++|+|++|||+|+++..|++|++.|+ | +++|||++|++|||++.+.+++++++++|++||+. .||||++|++
T Consensus 243 ~~v~~~g~dv~Iia~G~~v~~a~~Aa~~L~--G-~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GG~g~~v~~ 319 (369)
T 1ik6_A 243 ARVAREGDDVTLVTYGAVVHKALEAAERVK--A-SVEVVDLQTLNPLDFDTVLKSVSKTGRLIIAHDSPKTGGLGAEVRA 319 (369)
T ss_dssp CEEEECCSSEEEEECTTHHHHHHHHHHTSS--S-CEEEEECCEEETTCHHHHHHHHHHHCCEEEEEEEESTTSHHHHHHH
T ss_pred eEEEEcCCCEEEEEeCHHHHHHHHHHHHhC--C-CeEEEeeeecCCCCHHHHHHHHhccCeEEEEecCCcCCcHHHHHHH
Confidence 999999999999999999999999999997 8 99999999999999999999998888999999997 7999999999
Q ss_pred HHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHhh
Q 004946 661 FIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLG 712 (722)
Q Consensus 661 ~l~~~~~~~~~~~v~~ig~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~ll~ 712 (722)
++.++++.....++.++|++|.|+++|+ +++++|+|+++|+++|+++++
T Consensus 320 ~l~~~~~~~l~~pv~~vg~~d~~~~~~~---l~~~~gl~~~~I~~~i~~~l~ 368 (369)
T 1ik6_A 320 LVAEKALDRLTAPVIRLAGPDVPQSPIA---ADAAYAPTVERIIKAIEYVMR 368 (369)
T ss_dssp HHHHHSGGGCSSCCEEEEECCCC---------------CHHHHHHHHHHHHT
T ss_pred HHHhhCccccCCCeEEEcCCCcCCCCHH---HHHHhCcCHHHHHHHHHHHhh
Confidence 9998875323468899999999999987 899999999999999999874
No 18
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=100.00 E-value=9e-57 Score=533.04 Aligned_cols=537 Identities=14% Similarity=0.079 Sum_probs=373.8
Q ss_pred cCCCHHHHHHHHHH---HHHHHHHhHhc-CCCCCCCcchHHHHHHHHhhccC-----CCCcEEEecCCchHHHHHHH--h
Q 004946 92 KSLTIKELKQLAVE---IRSELSSIVSK-TEKSLKSSLAAVELTVALHHVFH-----APVDKILWDVGEQTYAHKIL--T 160 (722)
Q Consensus 92 ~~l~~~~l~~la~e---iR~~ii~~~~~-~gGh~~~slg~vel~~aL~~vf~-----~p~D~iv~d~GH~~y~h~~l--t 160 (722)
.+++.+++..+.+. +|.+-.....+ .+|-..+..|+-.+.+++-..++ .++|.++ ...|+...|.+. .
T Consensus 113 ~~~s~e~~~~~y~~m~~~R~fE~~l~~~~~~~k~~g~~G~Ea~~~g~~~~l~~~~~l~~~D~v~-gm~hRg~~~~Lan~~ 191 (868)
T 2yic_A 113 DKPTVAEQKYILSKLNAAEAFETFLQTKYVGQKRFSLEGAETVIPMMDAVIDQCAEHGLDEVVI-AMPHRGRLNVLANIV 191 (868)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCGGGCCTTCTTHHHHHHHHHHHHHHTTCSEEEE-ECCSTTHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCChHHHHHHHHHHHHHhhhCCCCCEEE-eccccchHHHHHHHh
Confidence 57888887777554 34433333332 22222233554222222222211 3677665 246999888887 6
Q ss_pred CchhhhhHHHhhCCC-CCC-CCC-CC-CCC-------------------CCcCcCCCcchHHHHHHHHHHHHHcC-----
Q 004946 161 GRRSLIHTLRKKDGI-SGY-TSR-SE-SEY-------------------DPFNAGHGCNSVSAGLGMAVARDIKG----- 212 (722)
Q Consensus 161 Gr~~~~~~~r~~ggl-~g~-~~~-~e-s~~-------------------d~~~~G~~G~~ls~A~G~A~A~~l~~----- 212 (722)
|... -..+.++-|. .+. .+. .. +.| .....||+|+++|+|+|+|+|.++++
T Consensus 192 G~~~-~~i~ae~~G~~~g~~~~g~gdv~~Hlg~~~~~~~~~g~~~v~l~l~~n~s~Lg~~~P~A~G~A~A~k~~~~~~~~ 270 (868)
T 2yic_A 192 GKPY-SQIFSEFEGNLNPSQAHGSGDVKYHLGATGTYIQMFGDNDIEVSLTANPSHLEAVDPVLEGLVRAKQDLLDTGEE 270 (868)
T ss_dssp CCCH-HHHTTTCC------------CGGGTCCEEEEEECSSSSCEEEEEECCCCSSTTTTHHHHHHHHHHHHHHHTCSTT
T ss_pred CCCH-HHHHHHhcCCCCCCccCCCCCccccCCccccccccCCCcceeeeecCCCccccccccHHHHHHHHHHhhccCCcc
Confidence 6421 1223333332 222 011 11 111 01235789999999999999998764
Q ss_pred -----CCCeEEEEecCCCc-ccchHHHHHHHhhhcCCC---EEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhH
Q 004946 213 -----KRECIVTVISNGTT-MAGQAYEAMSNAGYLDSN---MIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (722)
Q Consensus 213 -----~~~~Vv~viGDGa~-~~G~~~EAln~A~~~~~p---livIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (722)
.+..+||++|||++ ++|.+|||||+|+.+++| +|+||+||++. +.| +.. ..
T Consensus 271 ~~~~~~~~~vv~~~GDGa~~~eG~v~Ealn~A~~~~lp~g~vi~iv~NN~~g-~st-------~~~-------~~----- 330 (868)
T 2yic_A 271 GSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIG-FTT-------APT-------DS----- 330 (868)
T ss_dssp SSSCSCCEEEEEEEEHHHHHHCHHHHHHHTTTTCTTTCCSCCEEEEEECSCB-TTB-------CHH-------HH-----
T ss_pred cccccCCceEEEEECCcccccccHHHHHHHHHHhcCCCCCCeEEEEEcCCcc-ccc-------Ccc-------cc-----
Confidence 56799999999996 899999999999999987 99999999872 111 100 00
Q ss_pred HHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhc--CCCCCEE
Q 004946 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASL--GSMGPVL 361 (722)
Q Consensus 284 ~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~--~~~~P~l 361 (722)
+. .+....+++++||+++ .|||||++++.+++++|.+. ..++|++
T Consensus 331 ------------------------------~s--~~~~~~~a~a~G~p~~-~VdG~D~~av~~a~~~A~~~ar~~~~Pvl 377 (868)
T 2yic_A 331 ------------------------------RS--SEYCTDVAKMIGAPIF-HVNGDDPEACAWVARLAVDFRQAFKKDVV 377 (868)
T ss_dssp ------------------------------CS--SSSTTGGGGGGTCCEE-EEETTCHHHHHHHHHHHHHHHHHHCCCEE
T ss_pred ------------------------------cc--ccCHHHHHHhCCCcEE-EEeCCCHHHHHHHHHHHHHHHHhCCCCEE
Confidence 00 0112457899999998 79999999999999887641 1478999
Q ss_pred EEEEeeccCCCccccccc-----chhhccCCCC-----------------------------------------------
Q 004946 362 VHVVTEENRRAEDTQKSE-----AIEKQQEGAS----------------------------------------------- 389 (722)
Q Consensus 362 I~v~T~kG~G~~~ae~~~-----~~~~~H~~~~----------------------------------------------- 389 (722)
|+++|.+++|........ ....|+....
T Consensus 378 Ie~~tyR~~GHs~~D~p~~~~p~~~~~~~~~~dPi~~~~~~L~~~G~~t~ee~~~i~~e~~~~v~~a~~~a~~~~p~~~~ 457 (868)
T 2yic_A 378 IDMLCYRRRGHNEGDDPSMTQPYMYDVIDTKRGSRKAYTEALIGRGDISMKEAEDALRDYQGQLERVFNEVRELEKHEIE 457 (868)
T ss_dssp EEEECCCCSCSSTTCCGGGTCHHHHHHHTTCCCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred EEEEeecCCCcCcccccccCChHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 999999999986543200 0011221100
Q ss_pred --------------CCCCCC-------------CC---CCccch------H----------HHHHHHH--HHHHhcCCCE
Q 004946 390 --------------DSNSLP-------------FG---NYSRTY------D----------DCFIEAL--VMEAEKDKDI 421 (722)
Q Consensus 390 --------------~~tg~~-------------~~---~~~~s~------~----------~a~~~~L--~~~~~~d~~i 421 (722)
..|+.. .+ ...... + .+++++| ..+++++++|
T Consensus 458 ~~~~~~~~~~~~~~~~t~~~~~~l~~~~~~~~~~p~~~~~~~~v~~~~~~R~~m~~~~~i~~a~~e~la~~~l~~~~~~V 537 (868)
T 2yic_A 458 PSESVEADQQIPSKLATAVDKAMLQRIGDAHLALPEGFTVHPRVRPVLEKRREMAYEGRIDWAFAELLALGSLIAEGKLV 537 (868)
T ss_dssp --------------CCCCCCHHHHHHHHHHTTCCCTTCCCCTTTHHHHHHHHHHHHHCCBCHHHHHHHHHHHHHHTTCEE
T ss_pred cccccccccccccCCCCccCHHHHHHHHHhhccCCcccccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhcCCCE
Confidence 011100 00 000000 1 1333332 2558999999
Q ss_pred EEEecCCCCcc------------------chHHH------HH-hCCCceeecccchHHHHHHHHHHhcCCCe--eEEE-e
Q 004946 422 VVVHAGMEMDL------------------SLQLF------QE-KFPERYFDVGMAEQHAVTFSAGLACGGLK--PFCI-I 473 (722)
Q Consensus 422 v~i~ad~~~~~------------------~l~~f------~~-~~p~R~~d~GIaE~~av~~AaGlA~~G~~--p~~~-t 473 (722)
+++++|++.+| .++.| .+ ++|+||||+||+|++++|+|+|+|+.|.+ |+++ +
T Consensus 538 ~~~G~Dv~~~Tfs~rh~v~~d~~~g~~~~~~~~l~~~~~~~~~~~p~Rv~ds~IsE~~~vG~a~G~A~~G~~~~~i~eaq 617 (868)
T 2yic_A 538 RLSGQDTQRGTFTQRHAVIVDRKTGEEFTPLQLLATNPDGTPTGGKFLVYNSALSEFAAVGFEYGYSVGNPDAMVLWEAQ 617 (868)
T ss_dssp EEEETTTTTCTTSCCCSSEECTTTCCEECGGGGGGBCTTSCBCSCEEEEEECCSCSHHHHHHHHHHHHHCTTSEEEEECS
T ss_pred EEEcCcCCccchhhcchhccccCCCceecchhhhcccccchhhcCCcEEEECCccHHHHHHHHHHHHccCCCCceEEEEe
Confidence 99999998752 25778 55 78999999999999999999999999954 5444 5
Q ss_pred cHhhHHHH---HHHHHHHH---hcCCCCEEEEEeCCCccCCCCCCcCc--HHHHHHhcCCCCcEEEeeCCHHHHHHHHHH
Q 004946 474 PSAFLQRA---YDQVVNDV---DQQRLPVRFVITSAGLVGSDGPTQCG--AFDITFMSCLPNMIVMAPSDEDELVDMVAT 545 (722)
Q Consensus 474 ~~~Fl~ra---~dqi~~~~---a~~~lpVv~v~~~~G~~G~dG~TH~~--~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~ 545 (722)
|++|+++| +||+++++ ..+++||+++++++| .| +||+|++ .+++..|+++|||+|++|+|+.|++.+|++
T Consensus 618 f~dF~~~AQ~~~DQ~i~~~~~k~~~~~~vvi~~p~G~-~G-~Gp~Hs~~~~E~~l~l~~~pnm~V~~Ps~p~~~~~lLr~ 695 (868)
T 2yic_A 618 FGDFVNGAQSIIDEFISSGEAKWGQLSDVVLLLPHGH-EG-QGPDHTSGRIERFLQLWAEGSMTIAMPSTPANYFHLLRR 695 (868)
T ss_dssp SGGGGGGGHHHHHHTTTTHHHHHCCCCCCEEEEECCC-SS-SCTTSSCCCHHHHHHHCCTTSCEEECCCSHHHHHHHHHH
T ss_pred hHHHHhhHHHHHHHHHHHHHHHhCCCCCEEEEecCCC-CC-CChhhcCCcHHHHHhcCCCCCCEEEEeCCHHHHHHHHHH
Confidence 99999887 99999887 356999999999877 67 9999998 788777899999999999999999999999
Q ss_pred HhhhC-CCCEEEEecCCCcccc-cCCC-----CCCCCccccccEEE---EEeCCcE--EEEEechhhHHHHHHHHHHHhc
Q 004946 546 VASID-DRPVCFRYPRGAIVRT-DLPG-----YRGIPIEEIGKGKV---LVEGKDV--ALLGYGAMVQNCLKARALLSKL 613 (722)
Q Consensus 546 a~~~~-~~Pv~ir~~r~~~~~~-~~p~-----~~~~~~~~igk~~v---l~eG~dv--~lva~Gs~v~~aleAa~~L~~~ 613 (722)
++..+ .+|++|++||..+... ..+. ...+.. ++|++.+ +++|+|| +|||+|.+ ..++++++ +++
T Consensus 696 a~~~~~~~Pvii~~pk~llR~~~~~~~~~~~~~~~f~~-~ig~~~~~~~l~~g~dv~r~Ii~~G~~-~~~l~aa~--~~~ 771 (868)
T 2yic_A 696 HGKDGIQRPLIVFTPKSMLRNKAAVSDIRDFTESKFRS-VLEEPMYTDGEGDRNKVTRLLLTSGKI-YYELAARK--AKE 771 (868)
T ss_dssp HHHSSCCCCEEEEECSGGGGCTTSCBCHHHHHSCCCCS-EECCHHHHTSSCCGGGCCEEEEECSTH-HHHHHHHH--HHH
T ss_pred HHhcCCCCcEEEEechHHhCCCCCCCCccccCCCCcee-cCCcceeecccccCCceeEEEEEecHH-HHHHHHHH--HhC
Confidence 87642 4899999999853211 1111 001222 5788876 7889999 99999998 67776665 567
Q ss_pred C-CcEEEeecCccccchHHHHHHHhcCCCe---EEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCccccC-C
Q 004946 614 G-IDVTVADARFCKPLDIKLVRELCQNHTF---LITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEH-A 687 (722)
Q Consensus 614 G-i~v~Vidl~~lkPld~e~i~~~~~~~~~---vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~v~~ig~~d~f~~~-g 687 (722)
| ++++|||+++|+|||.++|.++++++++ ||++||+. .||+|++|++.+.+. +.....+++++|.+|.|.+. |
T Consensus 772 g~i~v~VIdl~~l~Pld~~~i~~~~~k~~~~~~vv~veE~~~~gG~g~~v~~~l~e~-~~~l~~~v~~vg~~d~~~p~~g 850 (868)
T 2yic_A 772 NREDVAIVRIEQLAPLPRRRLAETLDRYPNVKEKFWVQEEPANQGAWPSFGLTLPEI-LPDHFTGLKRISRRAMSAPSSG 850 (868)
T ss_dssp TCTTEEEEEECEEESCCHHHHHHHHHTCTTCCEEEEEEEEETTSTTHHHHHHHHHHH-CHHHHTTCEEEEECCCSSSSCS
T ss_pred CCCCEEEEEeeecCCCCHHHHHHHHHhcCCCceEEEEEeCCCCCCcHHHHHHHHHHH-hhhcCCCeEEeccCCcCCCCCC
Confidence 9 9999999999999999999999999886 89998887 799999999999873 21113578999999999984 5
Q ss_pred CHH
Q 004946 688 SPT 690 (722)
Q Consensus 688 ~~~ 690 (722)
...
T Consensus 851 ~~~ 853 (868)
T 2yic_A 851 SSK 853 (868)
T ss_dssp CHH
T ss_pred CHH
Confidence 543
No 19
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=100.00 E-value=1.4e-56 Score=484.82 Aligned_cols=307 Identities=21% Similarity=0.290 Sum_probs=275.5
Q ss_pred CccchHHHHHHHHHHHHhcCCCEEEEecCCCC--c-c-chHHHHHhC-CCceeecccchHHHHHHHHHHhcCCCeeEEE-
Q 004946 399 YSRTYDDCFIEALVMEAEKDKDIVVVHAGMEM--D-L-SLQLFQEKF-PERYFDVGMAEQHAVTFSAGLACGGLKPFCI- 472 (722)
Q Consensus 399 ~~~s~~~a~~~~L~~~~~~d~~iv~i~ad~~~--~-~-~l~~f~~~~-p~R~~d~GIaE~~av~~AaGlA~~G~~p~~~- 472 (722)
.+.+|+++|+++|.+++++|++|+++++|++. + + .++.|+++| |+||||+||+|++|+++|+|+|++|+|||++
T Consensus 13 ~~~~~~~a~~~~L~~l~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~gp~r~~d~gIaE~~~v~~a~G~A~~G~rp~~~~ 92 (341)
T 2ozl_B 13 LQVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEF 92 (341)
T ss_dssp CEEEHHHHHHHHHHHHHHHCTTEEEEETTSSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred ccccHHHHHHHHHHHHHhhCCCEEEECCcccccCCcchhHHHHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEEEe
Confidence 45789999999999999999999999999983 3 2 268899999 9999999999999999999999999999998
Q ss_pred ecHhhHHHHHHHHHHHHhc--------CCCCEEEEEeCCCccCCCCCCcCcHHHHHHhcCCCCcEEEeeCCHHHHHHHHH
Q 004946 473 IPSAFLQRAYDQVVNDVDQ--------QRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVA 544 (722)
Q Consensus 473 t~~~Fl~ra~dqi~~~~a~--------~~lpVv~v~~~~G~~G~dG~TH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~ 544 (722)
+|++|++|++|||++++|+ +++||++++++ |.+|.||+||++..| ++++++|||+|++|+|++|++++++
T Consensus 93 ~f~~F~~~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~-G~~g~~G~tHs~~~e-a~l~~iP~l~V~~Psd~~e~~~~l~ 170 (341)
T 2ozl_B 93 MTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPN-GASAGVAAQHSQCFA-AWYGHCPGLKVVSPWNSEDAKGLIK 170 (341)
T ss_dssp SSGGGGGGGHHHHHTTTTTHHHHTTSSCCCCCEEEEEC-SCCSSCCGGGCCCCH-HHHHTSTTCEEECCCSHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhccccCCCCEEEEEcC-cCCCCCCcchhhHHH-HHhccCCCCEEEEeCCHHHHHHHHH
Confidence 6999999999999999983 99999999997 778899999987778 8999999999999999999999999
Q ss_pred HHhhhCCCCEEEEecCCCcc-cccC----CCCCCCCccccccEEEEEeCCcEEEEEechhhHHHHHHHHHHHhcCCcEEE
Q 004946 545 TVASIDDRPVCFRYPRGAIV-RTDL----PGYRGIPIEEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTV 619 (722)
Q Consensus 545 ~a~~~~~~Pv~ir~~r~~~~-~~~~----p~~~~~~~~~igk~~vl~eG~dv~lva~Gs~v~~aleAa~~L~~~Gi~v~V 619 (722)
+|++ .++|++||++|+... ...+ +. ..+.+ ++||++++++|+|++||++|+++..|++|++.|+++|++++|
T Consensus 171 ~a~~-~~~Pv~i~~~~~~~~~~~~v~p~~~~-~~~~~-~~Gk~~v~~~g~dv~iia~Gs~~~~a~~Aa~~L~~~Gi~v~v 247 (341)
T 2ozl_B 171 SAIR-DNNPVVVLENELMYGVPFEFPPEAQS-KDFLI-PIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEV 247 (341)
T ss_dssp HHHH-SSSCEEEEECHHHHTCEEECCHHHHS-TTCCC-CTTCCEEEECCSSEEEEECSTHHHHHHHHHHHHHTTTCCEEE
T ss_pred HHHh-cCCCEEEEEChhhhcCCCCcCCccCC-ccccc-cCCceEEeccCCCEEEEEeCHHHHHHHHHHHHHHhcCCCeEE
Confidence 9987 589999999976411 1112 22 23456 789999999999999999999999999999999999999999
Q ss_pred eecCccccchHHHHHHHhcCCCeEEEEcCCC-CCChHHHHHHHHHh-cCCCCCCCceEEEecCCccccCCCHHHHHHHcC
Q 004946 620 ADARFCKPLDIKLVRELCQNHTFLITVEEGS-IGGFGSHVSHFIAL-DGLLDSGVKWRPIVLPDNYIEHASPTQQLALAG 697 (722)
Q Consensus 620 idl~~lkPld~e~i~~~~~~~~~vvvvEe~~-~gG~gs~v~~~l~~-~~~~~~~~~v~~ig~~d~f~~~g~~~~l~~~~g 697 (722)
||+++++|||++.+++++++++.+|+|||+. .||||++|++++.+ +++...+.+++++|++|.|+++|+ ++++++|
T Consensus 248 v~~~~l~P~d~~~i~~~~~~~~~vv~vEe~~~~Gg~g~~v~~~l~~~~~~~~l~~~v~~ig~~d~~~~~g~--~l~~~~g 325 (341)
T 2ozl_B 248 INMRTIRPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAK--ILEDNSI 325 (341)
T ss_dssp EECCEEETCCHHHHHHHHHHHSCEEEECSSCSTTCHHHHHHHHHHHSTTGGGCSSCCEEECCCSSCCCSSH--HHHHTTS
T ss_pred EeeeeecCCCHHHHHHHHhcCCeEEEEecCcccCcHHHHHHHHHHhhhcccccCCCEEEEecCCcCCCCcH--HHHHHhC
Confidence 9999999999999999999888999999998 69999999999998 875323568899999999999986 6889999
Q ss_pred CCHHHHHHHHHHHhh
Q 004946 698 LTGHHIAATALSLLG 712 (722)
Q Consensus 698 l~~~~I~~~i~~ll~ 712 (722)
+|+++|+++|+++++
T Consensus 326 ~~~~~I~~~i~~~l~ 340 (341)
T 2ozl_B 326 PQVKDIIFAIKKTLN 340 (341)
T ss_dssp CCHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHhc
Confidence 999999999998874
No 20
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=100.00 E-value=1.9e-56 Score=481.56 Aligned_cols=305 Identities=23% Similarity=0.305 Sum_probs=273.8
Q ss_pred ccchHHHHHHHHHHHHhcCCCEEEEecCCCCcc----chHHHHHhC-CCceeecccchHHHHHHHHHHhcCCCeeEEE-e
Q 004946 400 SRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDL----SLQLFQEKF-PERYFDVGMAEQHAVTFSAGLACGGLKPFCI-I 473 (722)
Q Consensus 400 ~~s~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~----~l~~f~~~~-p~R~~d~GIaE~~av~~AaGlA~~G~~p~~~-t 473 (722)
..+|+++|+++|.+++++||+|+++++|++.+. .+..|+++| |+||||+||+|++|+++|+|+|++|+|||++ +
T Consensus 2 ~~~~~~a~~~~L~~l~~~~~~vv~~~~d~~~~~g~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~G~A~~G~rp~~~~t 81 (324)
T 1w85_B 2 QMTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESGIGGLAIGLALQGFRPVPEIQ 81 (324)
T ss_dssp EECHHHHHHHHHHHHHHHCTTEEEEETTCSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEBCS
T ss_pred cchHHHHHHHHHHHHHhHCcCEEEEcCcccccCCcchhHHHHHHHhCCCcEEEcchhHHHHHHHHHHHHhCCCEEEEEec
Confidence 358999999999999999999999999998532 347899999 9999999999999999999999999999998 6
Q ss_pred cHhhHHHHHHHHHHHHhc--------CCCCEEEEEeCCCccCCCCCCcCcHHHHHHhcCCCCcEEEeeCCHHHHHHHHHH
Q 004946 474 PSAFLQRAYDQVVNDVDQ--------QRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVAT 545 (722)
Q Consensus 474 ~~~Fl~ra~dqi~~~~a~--------~~lpVv~v~~~~G~~G~dG~TH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~ 545 (722)
|++|++|++|||++++|+ +++||+++.++ |..|.+|+||++ +|.++++++|||+|++|+|++|+++++++
T Consensus 82 ~~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~~-g~~~~~g~~hs~-~~~a~~~~iP~l~V~~Psd~~e~~~~l~~ 159 (324)
T 1w85_B 82 FFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSPF-GGGVHTPELHSD-SLEGLVAQQPGLKVVIPSTPYDAKGLLIS 159 (324)
T ss_dssp SGGGGGGTHHHHHTTGGGHHHHTTTSSCCCCEEEEEE-CSSSCCCTTSSC-CCHHHHTTSTTCEEECCSSHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHhhhccCCCcCCEEEEEec-cCCCCCCCcccc-cHHHHHccCCCCEEEeeCCHHHHHHHHHH
Confidence 999999999999999997 89999999885 556788889988 66699999999999999999999999999
Q ss_pred HhhhCCCCEEEEecCCCccc--ccCCCCCCCCccccccEEEEEeCCcEEEEEechhhHHHHHHHHHHHhcCCcEEEeecC
Q 004946 546 VASIDDRPVCFRYPRGAIVR--TDLPGYRGIPIEEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADAR 623 (722)
Q Consensus 546 a~~~~~~Pv~ir~~r~~~~~--~~~p~~~~~~~~~igk~~vl~eG~dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~ 623 (722)
|++ .++|++||+|+..... ..+|. ..+.+ ++||++++++|+|++||++|++++.|++|++.|+++|++++|||++
T Consensus 160 a~~-~~~Pv~i~~p~~l~r~~~~~~~~-~~~~~-~~Gk~~~~~~g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~ 236 (324)
T 1w85_B 160 AIR-DNDPVIFLEHLKLYRSFRQEVPE-GEYTI-PIGKADIKREGKDITIIAYGAMVHESLKAAAELEKEGISAEVVDLR 236 (324)
T ss_dssp HHH-SSSCEEEEEETTTSSSCCEECCS-SCCCC-CTTCCEEEECCSSEEEEECTTHHHHHHHHHHHHHHTTCCEEEEECS
T ss_pred HHH-cCCCEEEEechHhcCCCCCCCCC-ccccc-cCCceEEEecCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEee
Confidence 997 7899999999876321 22332 23456 7899999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHhcCCCeEEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHH
Q 004946 624 FCKPLDIKLVRELCQNHTFLITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHH 702 (722)
Q Consensus 624 ~lkPld~e~i~~~~~~~~~vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~v~~ig~~d~f~~~g~~~~l~~~~gl~~~~ 702 (722)
+++|||++.+.+++++++++|++||+. .||||++|++++.++++.....++.++|++|.|+++|+ +++++|+|+++
T Consensus 237 ~l~P~d~~~i~~~~~~~~~vvvvEe~~~~Gg~g~~v~~~l~~~~~~~l~~~v~~vg~~d~~~~~~~---l~~~~gl~~~~ 313 (324)
T 1w85_B 237 TVQPLDIETIIGSVEKTGRAIVVQEAQRQAGIAANVVAEINERAILSLEAPVLRVAAPDTVYPFAQ---AESVWLPNFKD 313 (324)
T ss_dssp EEESCCHHHHHHHHHHHSCEEEEEEEETTSSSHHHHHHHHHHHHGGGCSSCCEEEEECSSSSCCGG---GHHHHSCCHHH
T ss_pred eecCCCHHHHHHHHhhCCcEEEEeCCCcCChHHHHHHHHHHhhCccccCCCeEEEecCCcCCCcHH---HHHHhCcCHHH
Confidence 999999999999999989999999997 79999999999998865323467899999999999987 89999999999
Q ss_pred HHHHHHHHhh
Q 004946 703 IAATALSLLG 712 (722)
Q Consensus 703 I~~~i~~ll~ 712 (722)
|+++|+++++
T Consensus 314 I~~~i~~~l~ 323 (324)
T 1w85_B 314 VIETAKKVMN 323 (324)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhh
Confidence 9999998874
No 21
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=100.00 E-value=4.5e-56 Score=539.02 Aligned_cols=537 Identities=14% Similarity=0.074 Sum_probs=373.5
Q ss_pred cCCCHHHHHHHHHH---HHHHHHHhHhc-CCCCCCCcchHHHHHHHHhhccC-----CCCcEEEecCCchHHHHHHH--h
Q 004946 92 KSLTIKELKQLAVE---IRSELSSIVSK-TEKSLKSSLAAVELTVALHHVFH-----APVDKILWDVGEQTYAHKIL--T 160 (722)
Q Consensus 92 ~~l~~~~l~~la~e---iR~~ii~~~~~-~gGh~~~slg~vel~~aL~~vf~-----~p~D~iv~d~GH~~y~h~~l--t 160 (722)
.+++.+++..+.+. +|.+-.....+ .+|-..+..|+-.+.+++...++ .++|.++ ...|+.+.|.+. .
T Consensus 358 ~~~s~e~~~~~y~~m~~~r~fE~~l~~~~~~~k~~g~~GqEa~~~g~~~~l~~~~~l~~~D~v~-gm~hRg~~~~La~~~ 436 (1113)
T 2xt6_A 358 DKPTVAEQKYILSKLNAAEAFETFLQTKYVGQKRFSLEGAETVIPMMDAVIDQCAEHGLDEVVI-AMPHRGRLNVLANIV 436 (1113)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCGGGCCTTCTTHHHHHHHHHHHHHHTTCSEEEE-ECCSTTHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCChHHHHHHHHHHHHHhhhCCCCCEEE-eccccchHHHHHHHh
Confidence 57888887777554 34433332322 22222223555323333322221 3677665 236999888887 6
Q ss_pred CchhhhhHHHhhCCC-CCC-C--CCCCCCC-------------------CCcCcCCCcchHHHHHHHHHHHHHcC-----
Q 004946 161 GRRSLIHTLRKKDGI-SGY-T--SRSESEY-------------------DPFNAGHGCNSVSAGLGMAVARDIKG----- 212 (722)
Q Consensus 161 Gr~~~~~~~r~~ggl-~g~-~--~~~es~~-------------------d~~~~G~~G~~ls~A~G~A~A~~l~~----- 212 (722)
|... -..+.++-|. .|. . .++-+.| ....+||+|+++|.|+|+|+|.++++
T Consensus 437 G~~~-~~i~ae~~G~~~g~~~~g~gdv~~Hlg~~~~~~~~~g~~~v~l~l~~n~s~Lg~~~p~A~G~A~A~k~~~~~~~~ 515 (1113)
T 2xt6_A 437 GKPY-SQIFSEFEGNLNPSQAHGSGDVKYHLGATGTYIQMFGDNDIEVSLTANPSHLEAVDPVLEGLVRAKQDLLDTGEE 515 (1113)
T ss_dssp CCCH-HHHSTTC-------------CGGGTCCEEEEEECSSSSCEEEEEECCCCSSTTTTHHHHHHHHHHHHHHTTBSTT
T ss_pred CCCH-HHHHHHhcCCCCCCccCCCCCccccCCccccccccCCCcceeeeecCCCccccccccHHHHHHHHHHHhccccCc
Confidence 6411 1222333222 222 0 1110111 01235899999999999999999866
Q ss_pred -----CCCeEEEEecCCCc-ccchHHHHHHHhhhcCCC---EEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhH
Q 004946 213 -----KRECIVTVISNGTT-MAGQAYEAMSNAGYLDSN---MIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (722)
Q Consensus 213 -----~~~~Vv~viGDGa~-~~G~~~EAln~A~~~~~p---livIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (722)
.+..+||++|||++ ++|.+|||||+|+.+++| +|+||+||++. +.| +.. ..
T Consensus 516 ~~~~~~~~~~v~~~GDGa~~~eG~~~Ealn~A~~~~lp~g~vi~iv~NN~~g-ist-------~~~-------~~----- 575 (1113)
T 2xt6_A 516 GSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIG-FTT-------APT-------DS----- 575 (1113)
T ss_dssp SSBSCCCEEEEEEEEHHHHHHCTHHHHHHTTTTCTTTCCSCCEEEEEECSCB-TTB-------CHH-------HH-----
T ss_pred cccccCCcEEEEEECCcccccccHHHHHHHHHhhcCCCCCCeEEEEEeCCcc-ccc-------Ccc-------cc-----
Confidence 56899999999996 899999999999999987 99999999872 211 110 00
Q ss_pred HHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhc--CCCCCEE
Q 004946 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASL--GSMGPVL 361 (722)
Q Consensus 284 ~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~--~~~~P~l 361 (722)
+. .+....+++++||+++ .|||||++++.+++++|.+. ..++|++
T Consensus 576 ------------------------------~s--~~~~~~~a~a~G~p~~-~VdG~D~~av~~a~~~A~~~~r~~~~Pvl 622 (1113)
T 2xt6_A 576 ------------------------------RS--SEYCTDVAKMIGAPIF-HVNGDDPEACAWVARLAVDFRQAFKKDVV 622 (1113)
T ss_dssp ------------------------------CS--SSSTTGGGGGGTCCEE-EEETTCHHHHHHHHHHHHHHHHHHCCCEE
T ss_pred ------------------------------cc--ccCHHHHHHhcCCcEE-EEcCCCHHHHHHHHHHHHHHHHhcCCCEE
Confidence 00 0112457899999998 89999999999998877641 1378999
Q ss_pred EEEEeeccCCCccccccc-----chhhccCCC-C----------------------------------------------
Q 004946 362 VHVVTEENRRAEDTQKSE-----AIEKQQEGA-S---------------------------------------------- 389 (722)
Q Consensus 362 I~v~T~kG~G~~~ae~~~-----~~~~~H~~~-~---------------------------------------------- 389 (722)
|+++|.+++|........ ...+|+... |
T Consensus 623 Ie~~tyR~~GHs~~D~p~~~~~~~~~~~~~~~dpi~~~~~~L~~~G~~t~ee~~~i~~e~~~~v~~a~~~a~~~~~~~~~ 702 (1113)
T 2xt6_A 623 IDMLCYRRRGHNEGDDPSMTQPYMYDVIDTKRGSRKAYTEALIGRGDISMKEAEDALRDYQGQLERVFNEVRELEKHEIE 702 (1113)
T ss_dssp EEEECCCCSCSSTTCCGGGTCHHHHHHHTTCCCHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred EEEEeEccCCcCCCCccccCChHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 999999999986542100 000111000 0
Q ss_pred --------------CCCCCC-------------CC---CCccch------HH------HHHHHHH------HHHhcCCCE
Q 004946 390 --------------DSNSLP-------------FG---NYSRTY------DD------CFIEALV------MEAEKDKDI 421 (722)
Q Consensus 390 --------------~~tg~~-------------~~---~~~~s~------~~------a~~~~L~------~~~~~d~~i 421 (722)
..|+.. .+ ...... +. ++..++. +++++|++|
T Consensus 703 ~~~~~~~~~~~~~~~~t~~~~~~l~~~~~~~~~~p~~~~~~~~v~~~~~~r~~m~~~~~i~~a~~e~la~~~ll~~~~~V 782 (1113)
T 2xt6_A 703 PSESVEADQQIPSKLATAVDKAMLQRIGDAHLALPEGFTVHPRVRPVLEKRREMAYEGRIDWAFAELLALGSLIAEGKLV 782 (1113)
T ss_dssp --------------CCCCCCHHHHHHHHHHTTCCCTTCCCCTTTHHHHHHHHHHHHHCCBCHHHHHHHHHHHHHHTTCEE
T ss_pred cccccccccccccCCCCccCHHHHHHHHHhhccCCcccccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhcCCCE
Confidence 011100 00 000000 10 1112233 348999999
Q ss_pred EEEecCCCCcc------------------chHHH------HH-hCCCceeecccchHHHHHHHHHHhcCCCe--eEEE-e
Q 004946 422 VVVHAGMEMDL------------------SLQLF------QE-KFPERYFDVGMAEQHAVTFSAGLACGGLK--PFCI-I 473 (722)
Q Consensus 422 v~i~ad~~~~~------------------~l~~f------~~-~~p~R~~d~GIaE~~av~~AaGlA~~G~~--p~~~-t 473 (722)
+++++|++.++ .+..| .+ ++|+|+||+||+|++++|+|+|+|+.|.+ |+++ +
T Consensus 783 ~l~GeDv~rgtfs~rh~v~~d~~~g~~~~~l~~l~~~~~~~~~~~p~rv~ds~IsE~~~vg~a~G~A~~G~~~~~i~Eaq 862 (1113)
T 2xt6_A 783 RLSGQDTQRGTFTQRHAVIVDRKTGEEFTPLQLLATNPDGTPTGGKFLVYNSALSEFAAVGFEYGYSVGNPDAMVLWEAQ 862 (1113)
T ss_dssp EEEETTTTTCTTSCCCSSEECTTTCCEECGGGGGGBCTTSCBCSCEEEEEECCSCSHHHHHHHHHHHHHCTTSEEEEECS
T ss_pred EEEcccCCCccchhcchheecccCCceecchhccccccccchhcCCcEEEECCCCHHHHHHHHHHHHhcCCCCceEEEEE
Confidence 99999998764 36788 65 68999999999999999999999999954 5555 5
Q ss_pred cHhhHHHH---HHHHHHHH---hcCCCCEEEEEeCCCccCCCCCCcCc--HHHHHHhcCCCCcEEEeeCCHHHHHHHHHH
Q 004946 474 PSAFLQRA---YDQVVNDV---DQQRLPVRFVITSAGLVGSDGPTQCG--AFDITFMSCLPNMIVMAPSDEDELVDMVAT 545 (722)
Q Consensus 474 ~~~Fl~ra---~dqi~~~~---a~~~lpVv~v~~~~G~~G~dG~TH~~--~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~ 545 (722)
|++|++++ +||+++++ ..+++||+++++++| .| +|++||+ .+++..|+++|||+|++|+|+.|++.+|++
T Consensus 863 f~dF~~~aQ~~~DQ~i~~~~~k~~~~~~vv~~lp~G~-~G-~G~~Hs~~~~E~~l~l~~~pnm~V~~Ps~~~~~~~lLr~ 940 (1113)
T 2xt6_A 863 FGDFVNGAQSIIDEFISSGEAKWGQLSDVVLLLPHGH-EG-QGPDHTSGRIERFLQLWAEGSMTIAMPSTPANYFHLLRR 940 (1113)
T ss_dssp SGGGGGGGHHHHHHTTTTHHHHHCCCCCCEEEEECCC-SS-SCTTSSCCCHHHHHHHCCTTSCEEECCSSHHHHHHHHHH
T ss_pred EHHHHhhhHHHHHHHHHHHHHHhCCCCCEEEEeCCCC-CC-CChhhhcccHHHHHhcCCCCCcEEEecCCHHHHHHHHHH
Confidence 99999877 99999987 467999999999877 67 8999999 566666699999999999999999999999
Q ss_pred HhhhC-CCCEEEEecCCCcccc-cCCCC-----CCCCccccccEEE---EEeCCcE--EEEEechhhHHHHHHHHHHHhc
Q 004946 546 VASID-DRPVCFRYPRGAIVRT-DLPGY-----RGIPIEEIGKGKV---LVEGKDV--ALLGYGAMVQNCLKARALLSKL 613 (722)
Q Consensus 546 a~~~~-~~Pv~ir~~r~~~~~~-~~p~~-----~~~~~~~igk~~v---l~eG~dv--~lva~Gs~v~~aleAa~~L~~~ 613 (722)
++..+ .+|++|++||..+... .++.. ..+.. ++|++.+ +++|+|| +|||+|.+ ..++++++ +++
T Consensus 941 a~~~~~~~Pvii~~pk~L~R~~~~~~~~~~~~~~~f~~-~ig~~~~~~~l~~g~dv~r~iv~~G~~-~~~l~aa~--~~~ 1016 (1113)
T 2xt6_A 941 HGKDGIQRPLIVFTPKSMLRNKAAVSDIRDFTESKFRS-VLEEPMYTDGEGDRNKVTRLLLTSGKI-YYELAARK--AKE 1016 (1113)
T ss_dssp HHHSSCCCCEEEEECSGGGSCSSSCBCHHHHHSCCCCS-EECCHHHHTSCCCSTTCCEEEEECSTH-HHHHHHHH--HHH
T ss_pred HHhccCCCCEEEEechHHhCCCCCCCcccccCCCCccc-cCCcceeeccccCccccCEEEEEECHH-HHHHHHHH--HhC
Confidence 88643 4899999999853211 11110 01222 5788876 7889999 99999998 77777776 567
Q ss_pred C-CcEEEeecCccccchHHHHHHHhcCCCe---EEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCccccC-C
Q 004946 614 G-IDVTVADARFCKPLDIKLVRELCQNHTF---LITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEH-A 687 (722)
Q Consensus 614 G-i~v~Vidl~~lkPld~e~i~~~~~~~~~---vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~v~~ig~~d~f~~~-g 687 (722)
| ++++|||+++|+|||.++|.++++++++ ||++||+. .||+|++|++.+.+. +.....+++++|.+|.|.+. |
T Consensus 1017 g~i~v~VIdl~~l~Pld~~~i~~~~~k~~~~~~vv~veE~~~~gG~gs~v~~~l~e~-~~~l~~~~~~vg~~d~~~p~~g 1095 (1113)
T 2xt6_A 1017 NREDVAIVRIEQLAPLPRRRLAETLDRYPNVKEKFWVQEEPANQGAWPSFGLTLPEI-LPDHFTGLKRISRRAMSAPSSG 1095 (1113)
T ss_dssp TCTTEEEEEESEEESCCHHHHHHHHTTCTTCCEEEEEEEEETTSTTHHHHHHHHHHH-SHHHHTTCEEEEECCCSSSSCS
T ss_pred CCCCEEEEEeeeecCCCHHHHHHHHHhCCCCceEEEEecCCCCCCcHHHHHHHHHHH-hhhcCCCeEEEccCCcCCCCCC
Confidence 9 9999999999999999999999999887 89999887 799999999999873 21113578999999999984 5
Q ss_pred CHH
Q 004946 688 SPT 690 (722)
Q Consensus 688 ~~~ 690 (722)
...
T Consensus 1096 ~~~ 1098 (1113)
T 2xt6_A 1096 SSK 1098 (1113)
T ss_dssp CHH
T ss_pred CHH
Confidence 543
No 22
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=100.00 E-value=1e-55 Score=475.93 Aligned_cols=304 Identities=24% Similarity=0.256 Sum_probs=272.5
Q ss_pred ccchHHHHHHHHHHHHhcCCCEEEEecCCCCcc----chHHHHHhC-CCceeecccchHHHHHHHHHHhcCCCeeEEE-e
Q 004946 400 SRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDL----SLQLFQEKF-PERYFDVGMAEQHAVTFSAGLACGGLKPFCI-I 473 (722)
Q Consensus 400 ~~s~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~----~l~~f~~~~-p~R~~d~GIaE~~av~~AaGlA~~G~~p~~~-t 473 (722)
..+|+++|+++|.+++++|++|+++++|++.+. .+..|+++| |+||||+||+|++|+++|+|+|++|+|||++ +
T Consensus 3 ~~~~~~a~~~~l~~l~~~~~~vv~~~~D~~~~~g~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~G~A~~G~~p~~~~t 82 (324)
T 1umd_B 3 LMTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAIVGAALGMAAHGLRPVAEIQ 82 (324)
T ss_dssp EECHHHHHHHHHHHHHHHCTTEEEEETTCSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHHTCEEEEECS
T ss_pred CCcHHHHHHHHHHHHHhcCCCEEEECCcccccCCcchhhHHHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEEEec
Confidence 468999999999999999999999999998533 347899999 9999999999999999999999999999998 6
Q ss_pred cHhhHHHHHHHHHHHHhc--------CCCCEEEEEeCCCccCCCCCCcCcHHHHHHhcCCCCcEEEeeCCHHHHHHHHHH
Q 004946 474 PSAFLQRAYDQVVNDVDQ--------QRLPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVAT 545 (722)
Q Consensus 474 ~~~Fl~ra~dqi~~~~a~--------~~lpVv~v~~~~G~~G~dG~TH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~ 545 (722)
|++|++|++|||++++|+ +++|++++.++ |..|.+|++||+ +|+++++++|||+|++|+|++|+++++++
T Consensus 83 ~~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~~-g~~~~~g~~hs~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~~ 160 (324)
T 1umd_B 83 FADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMPS-GGGVRGGHHHSQ-SPEAHFVHTAGLKVVAVSTPYDAKGLLKA 160 (324)
T ss_dssp SGGGCGGGHHHHHHTTTTHHHHTTTSSCCCCEEEEEE-CSSSSCGGGSSC-CCHHHHHTSTTCEEEECCSHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHHhhcCCCCcCCEEEEEcC-CCCCCCCCccch-hHHHHHhcCCCCEEEEeCCHHHHHHHHHH
Confidence 999999999999999997 89999999885 556778888888 78899999999999999999999999999
Q ss_pred HhhhCCCCEEEEecCCCccc--ccCCCCCCCCccccccEEEEEeCCcEEEEEechhhHHHHHHHHHHHhcCCcEEEeecC
Q 004946 546 VASIDDRPVCFRYPRGAIVR--TDLPGYRGIPIEEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADAR 623 (722)
Q Consensus 546 a~~~~~~Pv~ir~~r~~~~~--~~~p~~~~~~~~~igk~~vl~eG~dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~ 623 (722)
|++ .++|++||+|+..... .++|.. .+.+ ++||++++++|+|++||++|++++.|++|++.|+++||+++|||++
T Consensus 161 a~~-~~~Pv~i~~p~~l~~~~~~~~~~~-~~~~-~~Gk~~~~~~g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~ 237 (324)
T 1umd_B 161 AIR-DEDPVVFLEPKRLYRSVKEEVPEE-DYTL-PIGKAALRREGKDLTLICYGTVMPEVLQAAAELAKAGVSAEVLDLR 237 (324)
T ss_dssp HHH-CSSCEEEEEEGGGSSSCCEECCSS-CCCC-CTTCCEEEECCSSEEEEECGGGHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred HHh-cCCCEEEEechHhcCCCCCCcCCC-Cccc-cCCcceEEecCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 996 7899999998865321 223322 3446 7899999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHhcCCCeEEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHH
Q 004946 624 FCKPLDIKLVRELCQNHTFLITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHH 702 (722)
Q Consensus 624 ~lkPld~e~i~~~~~~~~~vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~v~~ig~~d~f~~~g~~~~l~~~~gl~~~~ 702 (722)
+++|||++.+++++++++++|++||+. .||||++|++++.++++.....++.++|++|.|+++| +++++|+|+++
T Consensus 238 ~l~P~d~~~i~~~~~~~~~vv~vEe~~~~gG~g~~v~~~l~~~~~~~l~~~v~~vg~~d~~~~~~----l~~~~g~~~~~ 313 (324)
T 1umd_B 238 TLMPWDYEAVMNSVAKTGRVVLVSDAPRHASFVSEVAATIAEDLLDMLLAPPIRVTGFDTPYPYA----QDKLYLPTVTR 313 (324)
T ss_dssp EEETCCHHHHHHHHHHHSCEEEEEEEESTTCHHHHHHHHHHHHHGGGCSSCCEEEEECSSCCCST----THHHHSCCHHH
T ss_pred eecCCCHHHHHHHHhcCCeEEEEecCCcCCCHHHHHHHHHHHhCccccCCCeEEEeCCCCCCCHH----HHHHhCcCHHH
Confidence 999999999999999988999999997 7999999999999876432346789999999999998 88999999999
Q ss_pred HHHHHHHHhh
Q 004946 703 IAATALSLLG 712 (722)
Q Consensus 703 I~~~i~~ll~ 712 (722)
|+++++++++
T Consensus 314 I~~~i~~~l~ 323 (324)
T 1umd_B 314 ILNAAKRALD 323 (324)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999998874
No 23
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=100.00 E-value=2.3e-55 Score=476.04 Aligned_cols=305 Identities=18% Similarity=0.255 Sum_probs=271.0
Q ss_pred CccchHHHHHHHHHHHHhcCCCEEEEecCCCC-cc--chHHHHHhC-CCceeecccchHHHHHHHHHHhcCCCeeEEE-e
Q 004946 399 YSRTYDDCFIEALVMEAEKDKDIVVVHAGMEM-DL--SLQLFQEKF-PERYFDVGMAEQHAVTFSAGLACGGLKPFCI-I 473 (722)
Q Consensus 399 ~~~s~~~a~~~~L~~~~~~d~~iv~i~ad~~~-~~--~l~~f~~~~-p~R~~d~GIaE~~av~~AaGlA~~G~~p~~~-t 473 (722)
...+|+++|+++|.+++++|++|+++++|++. ++ .+..|+++| |+||||+||+|++|+++|+|+|++|+|||++ +
T Consensus 19 ~~~~~~~a~~~aL~~l~~~~~~vv~~~~D~~~~gt~~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~G~A~~G~rp~~~~t 98 (342)
T 2bfd_B 19 QKMNLFQSVTSALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAEIQ 98 (342)
T ss_dssp EEECHHHHHHHHHHHHHHHCTTCEEEETTTTTTCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCCEEEECS
T ss_pred CCccHHHHHHHHHHHHHhcCCCEEEEcCccCCCcccchHHHHHHHhCCCeEEEcCcCHHHHHHHHHHHHHCCCeeEEEec
Confidence 34689999999999999999999999999973 22 458899999 9999999999999999999999999999997 6
Q ss_pred cHhhHHHHHHHHHHHHhcCCC---------CEEEEEeCCCccCCCCCCcCcHHHHHHhcCCCCcEEEeeCCHHHHHHHHH
Q 004946 474 PSAFLQRAYDQVVNDVDQQRL---------PVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVA 544 (722)
Q Consensus 474 ~~~Fl~ra~dqi~~~~a~~~l---------pVv~v~~~~G~~G~dG~TH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~ 544 (722)
|++|++|++|||++++|++++ ||+++++++| +.||+|||+.+|+++++++|||+|++|+|++|++++++
T Consensus 99 f~~F~~~a~dqi~~~~a~~~~~~~g~~~~~pvv~~~~~~g--~~~G~th~~~~d~~~l~~iP~l~V~~Psd~~e~~~~l~ 176 (342)
T 2bfd_B 99 FADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGC--VGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLL 176 (342)
T ss_dssp SGGGCGGGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEESC--CSSCGGGSSCCCHHHHHTSTTCEEECCSSHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHhhhcCCccCCCEEEEEecCC--CCCCcchhhHhHHHHHhcCCCcEEEeeCCHHHHHHHHH
Confidence 999999999999999996555 9999999877 35899999999999999999999999999999999999
Q ss_pred HHhhhCCCCEEEEecCCCccc--ccCCCCCCCCccccccEEEEEeCCcEEEEEechhhHHHHHHHHHHHhc-CCcEEEee
Q 004946 545 TVASIDDRPVCFRYPRGAIVR--TDLPGYRGIPIEEIGKGKVLVEGKDVALLGYGAMVQNCLKARALLSKL-GIDVTVAD 621 (722)
Q Consensus 545 ~a~~~~~~Pv~ir~~r~~~~~--~~~p~~~~~~~~~igk~~vl~eG~dv~lva~Gs~v~~aleAa~~L~~~-Gi~v~Vid 621 (722)
+|++ .++|++||+|+..... ..++. ..+.+ ++||++++++|+|++||++|++++.|++|++.|+++ |++++|||
T Consensus 177 ~a~~-~~~Pv~i~~p~~l~r~~~~~~~~-~~~~~-~~G~~~v~~~g~dv~iia~G~~~~~a~~Aa~~L~~~~Gi~v~vi~ 253 (342)
T 2bfd_B 177 SCIE-DKNPCIFFEPKILYRAAAEEVPI-EPYNI-PLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAKEKLGVSCEVID 253 (342)
T ss_dssp HHHH-SSSCEEEEEEGGGTTSCCEEEES-SCCCC-CSSCCEEEECCSSEEEEECTTHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred HHHh-cCCcEEEEecchhcCCCCCCCCC-cccce-eCCceEEeccCCCEEEEEECHHHHHHHHHHHHHHhhcCCCEEEEe
Confidence 9987 5899999888543111 11222 13456 789999999999999999999999999999999998 99999999
Q ss_pred cCccccchHHHHHHHhcCCCeEEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCH
Q 004946 622 ARFCKPLDIKLVRELCQNHTFLITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTG 700 (722)
Q Consensus 622 l~~lkPld~e~i~~~~~~~~~vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~v~~ig~~d~f~~~g~~~~l~~~~gl~~ 700 (722)
+++++|||++.+++++++++++|+|||+. .||||++|++++.++++.....++.++|++|.|++++ +++++|+|+
T Consensus 254 ~~~l~P~d~~~i~~~~~~~~~vv~vEe~~~~gg~g~~v~~~l~~~~~~~l~~~v~~vg~~d~~~~~~----l~~~~gl~~ 329 (342)
T 2bfd_B 254 LRTIIPWDVDTICKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFPHI----FEPFYIPDK 329 (342)
T ss_dssp CCEEESCCHHHHHHHHHHHSCEEEEEEEESTTCHHHHHHHHHHHHHGGGCSSCCEEEEECSSCCCST----THHHHSCCH
T ss_pred eeecCCCCHHHHHHHHhcCCEEEEEEeCccCCcHHHHHHHHHHhhCccccCCCeEEEecCCCCChHH----HHHHHCcCH
Confidence 99999999999999999988999999996 7999999999998876422246789999999999876 899999999
Q ss_pred HHHHHHHHHHhh
Q 004946 701 HHIAATALSLLG 712 (722)
Q Consensus 701 ~~I~~~i~~ll~ 712 (722)
++|+++|+++++
T Consensus 330 ~~I~~~i~~~l~ 341 (342)
T 2bfd_B 330 WKCYDALRKMIN 341 (342)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 999999998874
No 24
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=100.00 E-value=4.7e-54 Score=465.63 Aligned_cols=301 Identities=21% Similarity=0.272 Sum_probs=267.7
Q ss_pred ccchHHHHHHHHHHHHhcCCCEEEEecCCCCcc----chHHHHHhC-CCceeecccchHHHHHHHHHHhcCCCeeEEE-e
Q 004946 400 SRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDL----SLQLFQEKF-PERYFDVGMAEQHAVTFSAGLACGGLKPFCI-I 473 (722)
Q Consensus 400 ~~s~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~----~l~~f~~~~-p~R~~d~GIaE~~av~~AaGlA~~G~~p~~~-t 473 (722)
..+|+++|+++|.+++++|++|+++++|++.+. .+..|+++| |+||||+||+|++|+++|+|+|++|+|||++ +
T Consensus 4 ~~~~~~a~~~~l~~l~~~~~~vv~~~~D~~~~~g~~~~~~~~~~~~gp~r~~~~gisE~~~~~~a~G~A~~G~rp~~~~t 83 (338)
T 1qs0_B 4 TMTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPISESGIVGTAVGMGAYGLRPVVEIQ 83 (338)
T ss_dssp ECCHHHHHHHHHHHHHHHCTTEEEEETTCSSSCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHHTCEEEEECS
T ss_pred cchHHHHHHHHHHHHHhhCCCEEEECCcccccCCcchhHHHHHHHhCCCcEEEccccHHHHHHHHHHHHhCCCEEEEEec
Confidence 358999999999999999999999999997533 368899999 9999999999999999999999999999997 6
Q ss_pred cHhhHHHHHHHHHHHHhcCC--------CCEEEEEeCCCccCCCCCCcCcHHHHHHhcCCCCcEEEeeCCHHHHHHHHHH
Q 004946 474 PSAFLQRAYDQVVNDVDQQR--------LPVRFVITSAGLVGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVAT 545 (722)
Q Consensus 474 ~~~Fl~ra~dqi~~~~a~~~--------lpVv~v~~~~G~~G~dG~TH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~ 545 (722)
|++|++|++|||++++|+++ +||+++.+++| |.||+|||+.+|+++++++|||+|++|+|++|+++++++
T Consensus 84 ~~~F~~~a~dqi~~~~a~~~~~~~~~~~~pvv~~~~~~g--~~~G~th~s~~d~~~l~~iP~l~V~~Psd~~e~~~~l~~ 161 (338)
T 1qs0_B 84 FADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPCGG--GIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIA 161 (338)
T ss_dssp CGGGCGGGHHHHHTTTTTHHHHTTTSSCCCCEEEEEECC--SSSCCSSSSCCCHHHHTTSTTCEEECCCSHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEEeCCC--CCCCcccccccHHHHHhcCCCCEEEeeCCHHHHHHHHHH
Confidence 99999999999999999655 99999998877 679999999999999999999999999999999999999
Q ss_pred HhhhCCCCEEEEec----CCCcc---cc-----------cCCCCCCCCccccccEEEEEeCCcEEEEEechhhHHHHHHH
Q 004946 546 VASIDDRPVCFRYP----RGAIV---RT-----------DLPGYRGIPIEEIGKGKVLVEGKDVALLGYGAMVQNCLKAR 607 (722)
Q Consensus 546 a~~~~~~Pv~ir~~----r~~~~---~~-----------~~p~~~~~~~~~igk~~vl~eG~dv~lva~Gs~v~~aleAa 607 (722)
|++ .++|++||+| |+... .. .++. ..+.+ ++||++++++|+|++||++|++++.|++|+
T Consensus 162 A~~-~~~Pv~i~~p~~l~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~gk~~~~~~g~dv~iva~G~~~~~a~~Aa 238 (338)
T 1qs0_B 162 SIE-CDDPVIFLEPKRLYNGPFDGHHDRPVTPWSKHPHSAVPD-GYYTV-PLDKAAITRPGNDVSVLTYGTTVYVAQVAA 238 (338)
T ss_dssp HHH-SSSCEEEEEEGGGSSSCCCSCSSSCCCCSTTSTTCEEES-SCCCC-CTTCCCEEECCSSCEEEECTTHHHHHHHHH
T ss_pred HHh-cCCcEEEEEchHhhcCcccccccCccchhhcccccccCC-CCccc-ccCceeEecCCCCEEEEEeCHHHHHHHHHH
Confidence 997 4899999887 43221 00 1222 12345 789999999999999999999999999999
Q ss_pred HHHHhcCCcEEEeecCccccchHHHHHHHhcCCCeEEEEcCCC-CCChHHHHHHHHHhcCCCCCCCceEEEecCCccccC
Q 004946 608 ALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-IGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEH 686 (722)
Q Consensus 608 ~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~~~vvvvEe~~-~gG~gs~v~~~l~~~~~~~~~~~v~~ig~~d~f~~~ 686 (722)
+. +|++++|||++|++|||++.+++++++++++|+|||+. .||||++|++++.++++.....++.++|++|.|+++
T Consensus 239 ~~---~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~gG~g~~V~~~l~~~~~~~l~~~v~~ig~~d~~~~~ 315 (338)
T 1qs0_B 239 EE---SGVDAEVIDLRSLWPLDLDTIVESVKKTGRCVVVHEATRTCGFGAELVSLVQEHCFHHLEAPIERVTGWDTPYPH 315 (338)
T ss_dssp HH---HCCCCEEEECSEEESCCHHHHHHHHHHHSCEEEEESSCSTTSTHHHHHHHHHHHSSSSCCSCCEEEECCSSCCCS
T ss_pred HH---cCCCEEEEeecccCCCCHHHHHHHHhcCCEEEEEecCCcCCcHHHHHHHHHHHhcccccCCCeEEEecCCcCCcH
Confidence 97 59999999999999999999999999999999999997 799999999999988753334688999999999988
Q ss_pred CCHHHHHHHcCCCHHHHHHHHHHHhh
Q 004946 687 ASPTQQLALAGLTGHHIAATALSLLG 712 (722)
Q Consensus 687 g~~~~l~~~~gl~~~~I~~~i~~ll~ 712 (722)
+ +++++|+|+++|+++|+++++
T Consensus 316 ~----l~~~~g~~~~~I~~~i~~~l~ 337 (338)
T 1qs0_B 316 A----QEWAYFPGPSRVGAALKKVME 337 (338)
T ss_dssp T----THHHHSCCHHHHHHHHHHSSC
T ss_pred H----HHHHHCCCHHHHHHHHHHHhc
Confidence 7 889999999999999998763
No 25
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=99.96 E-value=3.7e-28 Score=265.13 Aligned_cols=230 Identities=13% Similarity=0.084 Sum_probs=181.9
Q ss_pred ccCCCHHHHHH---HHHHHHHHHHHhHh-cCCCCCCCc---chHHHHHHHHhhccCCCCcEEEecCCchHHHHHHHhCc-
Q 004946 91 LKSLTIKELKQ---LAVEIRSELSSIVS-KTEKSLKSS---LAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGR- 162 (722)
Q Consensus 91 ~~~l~~~~l~~---la~eiR~~ii~~~~-~~gGh~~~s---lg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltGr- 162 (722)
.++++.+++.+ .+.++|.+...+.. ..+||++++ .|+..++++++..|+..+|+|++ +|+.|+|++++|+
T Consensus 30 ~~~l~~~~l~~l~~~m~~~R~~~~~~~~~~~~G~~g~~~~~~G~ea~~~~~~~~l~~~rD~i~~--s~r~~~~~~~~G~~ 107 (367)
T 1umd_A 30 PLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKTSFIAPAAGHEAAQVAIAHAIRPGFDWVFP--YYRDHGLALALGIP 107 (367)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCCCCCTTCHHHHHHHHHHSCTTTSEEEC--CTTTHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCCCCcCHHHHHHHHHHHcCCCCcEEEe--CcHHHHHHHHcCCC
Confidence 46678777776 57889999998887 457887644 67777888888899865699998 8999999999998
Q ss_pred -hhhhhHHHhh------C-CCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHH
Q 004946 163 -RSLIHTLRKK------D-GISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEA 234 (722)
Q Consensus 163 -~~~~~~~r~~------g-gl~g~~~~~es~~d~~~~G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EA 234 (722)
.+.|.+++.. | +.++||...+ .+...++|++|+++|.|+|+|+|.++.+++++|||++|||++++|.++||
T Consensus 108 ~~~~l~~~~g~~~g~~~G~~~~~h~~~~~-~~~~~~~g~lG~~l~~a~G~A~a~k~~~~~~~vv~i~GDGa~~~G~~~Ea 186 (367)
T 1umd_A 108 LKELLGQMLATKADPNKGRQMPEHPGSKA-LNFFTVASPIASHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAG 186 (367)
T ss_dssp HHHHHHHHHTBTTCTTTTCSCSSCCCBTT-TTBCCCCSSTTTTHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHH
T ss_pred HHHHHHHHhCCCCCCCCCCCCCCCCcccc-cCcCCCCchhhhhhhHHHHHHHHHHHhCCCCeEEEEEcccccccCcHHHH
Confidence 4678888773 2 2455553211 22345689999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhh
Q 004946 235 MSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYAR 314 (722)
Q Consensus 235 ln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~ 314 (722)
||+|+.+++|+++||+||++ .+ +.+...
T Consensus 187 l~~A~~~~lpvi~vv~NN~~-gi-------~~~~~~-------------------------------------------- 214 (367)
T 1umd_A 187 INFAAVQGAPAVFIAENNFY-AI-------SVDYRH-------------------------------------------- 214 (367)
T ss_dssp HHHHHHTTCSEEEEEEECSE-ET-------TEEHHH--------------------------------------------
T ss_pred HHHHHHhCcCEEEEEecCCe-ee-------ccChhh--------------------------------------------
Confidence 99999999999999999996 22 111110
Q ss_pred cccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHh--cCCCCCEEEEEEeeccCCCcccc
Q 004946 315 GMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVAS--LGSMGPVLVHVVTEENRRAEDTQ 376 (722)
Q Consensus 315 ~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~--~~~~~P~lI~v~T~kG~G~~~ae 376 (722)
..-.++...++++|||.++ .|||+|..++.++++++.+ ...++|++||++|.|++|+..+.
T Consensus 215 ~~~~~d~~~~a~a~G~~~~-~Vdg~d~~av~~a~~~A~~~a~~~~gP~lIe~~t~r~~Ghs~~D 277 (367)
T 1umd_A 215 QTHSPTIADKAHAFGIPGY-LVDGMDVLASYYVVKEAVERARRGEGPSLVELRVYRYGPHSSAD 277 (367)
T ss_dssp HCSSSCSGGGGGGTTSCEE-EEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCCSCSSTTC
T ss_pred ccCCCCHHHHHHHcCCcEE-EeCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeecCCCCCCCC
Confidence 0001234678999999999 7899999999888876654 22479999999999999987764
No 26
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=99.93 E-value=8.4e-25 Score=238.11 Aligned_cols=226 Identities=17% Similarity=0.173 Sum_probs=169.1
Q ss_pred hhccCCCHHHHHHHHHHH---HHH---HHHhHh-cCCCCCCCcchHHHHHHHHhhccCCCCcEEEecCCchHHHHHHHhC
Q 004946 89 LRLKSLTIKELKQLAVEI---RSE---LSSIVS-KTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTG 161 (722)
Q Consensus 89 ~~~~~l~~~~l~~la~ei---R~~---ii~~~~-~~gGh~~~slg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltG 161 (722)
..+.+++.+++.++.+.+ |.+ +..... +.-|+++++.|+-.+.+++...++ |+|.++. .|+.++|.+..|
T Consensus 36 ~~~~~l~~e~l~~~y~~M~~~R~fe~~~~~~~~qgr~g~~~~~~G~Ea~~vg~~~~l~-~~D~v~~--~~R~~~~~~~~G 112 (368)
T 1w85_A 36 EAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLGFYAPTAGQEASQIASHFALE-KEDFILP--GYRDVPQIIWHG 112 (368)
T ss_dssp GGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSCCCCTTCHHHHHHHHHTCC-TTCEEEC--CSSCHHHHHHTT
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCCHHHHHHHHHHhcC-CcCEEEe--cchhHHHHHhcC
Confidence 345678888888887754 543 222222 122789999999888888888887 7998886 499999999999
Q ss_pred chhh--hhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhh
Q 004946 162 RRSL--IHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAG 239 (722)
Q Consensus 162 r~~~--~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~ 239 (722)
.... |..+ +|...|...+ ...+...+.|++|+++|+|+|+|+|.+++++++.|||++|||++++|.+||+||+|+
T Consensus 113 ~~~~~~~~el--~G~~~G~~~h-~~~~~~~~~g~lG~~lp~AvG~A~A~~~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~ 189 (368)
T 1w85_A 113 LPLYQAFLFS--RGHFHGNQIP-EGVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAG 189 (368)
T ss_dssp CCHHHHHHHH--HTCGGGGCCC-TTCCBCCCCCSTTHHHHHHHHHHHHHHHTTCSCCEEEEEETGGGGSHHHHHHHHHHH
T ss_pred CCHHHHHHHH--CCCCCCCCCC-cccccCCCccccCccccHHHHHHHHhHhhCCCCeEEEEEchhhhhhcHHHHHHHHHH
Confidence 7332 2222 2211121111 122334567999999999999999999999999999999999999999999999999
Q ss_pred hcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCC
Q 004946 240 YLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGP 319 (722)
Q Consensus 240 ~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~ 319 (722)
.+++|+++||+||++. +.+ +... ..-.+
T Consensus 190 ~~~lpvi~vv~NN~~g-i~~-------~~~~--------------------------------------------~~~~~ 217 (368)
T 1w85_A 190 AFKAPAIFVVQNNRFA-IST-------PVEK--------------------------------------------QTVAK 217 (368)
T ss_dssp HTTCCEEEEEEECSEE-TTE-------EGGG--------------------------------------------TCSCS
T ss_pred HHCcCEEEEEEcCCcc-cee-------cccc--------------------------------------------ccCCC
Confidence 9999999999999872 211 1110 00012
Q ss_pred ChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHh--cCCCCCEEEEEEeeccCCCc
Q 004946 320 QGSTLFEELGLYYIGPVDGHNIEDLISVLQEVAS--LGSMGPVLVHVVTEENRRAE 373 (722)
Q Consensus 320 ~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~--~~~~~P~lI~v~T~kG~G~~ 373 (722)
+...+++++||+++ .|||||++++.++++++.+ ...++|++|+++|.+.+|+.
T Consensus 218 d~~~~a~a~G~~~~-~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~r~~gHs 272 (368)
T 1w85_A 218 TLAQKAVAAGIPGI-QVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYGPHT 272 (368)
T ss_dssp CSGGGGGGTTCCEE-EEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCSSCSC
T ss_pred CHHHHHHHCCCCEE-EEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeeccCCCC
Confidence 34678999999998 7899999999999988875 12479999999999999986
No 27
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=99.93 E-value=9.7e-25 Score=237.03 Aligned_cols=230 Identities=19% Similarity=0.149 Sum_probs=171.1
Q ss_pred CchhccCCCHHHHHHHHHHH---HHH-----HHHhHhcCCCCCCCcchHHHHHHHHhhccCCCCcEEEecCCchHHHHHH
Q 004946 87 NPLRLKSLTIKELKQLAVEI---RSE-----LSSIVSKTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKI 158 (722)
Q Consensus 87 ~p~~~~~l~~~~l~~la~ei---R~~-----ii~~~~~~gGh~~~slg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ 158 (722)
.|.+..+++.++|.++.+.+ |++ .++..++..|+++++.|+-.+.+++...++ |.|.|+. +|+.++|.+
T Consensus 24 ~~~~~~~l~~e~l~~~yr~M~~~R~~e~~~~~l~~~g~i~gf~~~~~GqEa~~vg~~~al~-~~D~i~~--~yR~~~~~~ 100 (365)
T 2ozl_A 24 GPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGIN-PTDHLIT--AYRAHGFTF 100 (365)
T ss_dssp CSCSEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCCCCCTTCHHHHHHHHHTSC-TTSEEEC--CSCCHHHHH
T ss_pred CccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCCChHHHHHHHHHhhC-CCCEEeh--HHHHHHHHH
Confidence 35666778888888876664 433 222233456999999999888888888887 7999888 799999999
Q ss_pred HhCchhhhhHHHhh-CCCCCCCCC-CCCCC----CCcC-cCCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchH
Q 004946 159 LTGRRSLIHTLRKK-DGISGYTSR-SESEY----DPFN-AGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQA 231 (722)
Q Consensus 159 ltGr~~~~~~~r~~-ggl~g~~~~-~es~~----d~~~-~G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~ 231 (722)
..|.... ..+.++ |...|+++. ..+.| ++++ .|++|+++|+|+|+|+|.+++++++.|||++|||++++|++
T Consensus 101 ~~G~~~~-~i~~e~~g~~~g~~~g~gg~~H~~~~~~~~~~g~~G~~lp~A~G~A~A~~~~~~~~~vv~~~GDGa~~~G~~ 179 (365)
T 2ozl_A 101 TRGLSVR-EILAELTGRKGGCAKGKGGSMHMYAKNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQI 179 (365)
T ss_dssp HTTCCHH-HHHHHHTTCTTSTTTTSSCTTCCCBTTBCCCCCSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHH
T ss_pred hcCCCHH-HHHHHHcCCCCCCCCCCCCCCCcCccccCCCcchhhhhhHHHHHHHHHHHhcCCCceEEEEECchhhhccHH
Confidence 9997432 223343 334444432 23333 2333 49999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHH
Q 004946 232 YEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDE 311 (722)
Q Consensus 232 ~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~ 311 (722)
||+||+|+.+++|+|+||+||++. + +.+....
T Consensus 180 ~Ealn~A~~~~lpvi~vv~NN~~g-~-------~t~~~~~---------------------------------------- 211 (365)
T 2ozl_A 180 FEAYNMAALWKLPCIFICENNRYG-M-------GTSVERA---------------------------------------- 211 (365)
T ss_dssp HHHHHHHHHTTCCEEEEEEECSEE-T-------TEEHHHH----------------------------------------
T ss_pred HHHHHHHHHHCcCEEEEEECCCcc-c-------CCCcccc----------------------------------------
Confidence 999999999999999999999872 1 1111100
Q ss_pred HhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHh--cCCCCCEEEEEEeeccCCCccc
Q 004946 312 YARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVAS--LGSMGPVLVHVVTEENRRAEDT 375 (722)
Q Consensus 312 ~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~--~~~~~P~lI~v~T~kG~G~~~a 375 (722)
...++... +++|+.++ .|||||++++.++++++.+ ...++|++||++|.+.+|+...
T Consensus 212 ----~~~~~~~~--ra~g~p~~-~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~R~~gHs~~ 270 (365)
T 2ozl_A 212 ----AASTDYYK--RGDFIPGL-RVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHEMS 270 (365)
T ss_dssp ----CSCCCGGG--TTTTSCEE-EEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCSSCSSTT
T ss_pred ----cCCCCHHH--HhCCCCEE-EEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeecCCCCCCC
Confidence 00111222 57899998 7899999999999987764 1258999999999999997643
No 28
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=99.91 E-value=3.2e-25 Score=244.22 Aligned_cols=284 Identities=13% Similarity=0.085 Sum_probs=101.4
Q ss_pred chHHHHHHHHHHHHhcCCCEEEEecCCCCccchHHHHH---hCCCceeecccchHHHHHHHHHHhcCCCeeEEEecHhhH
Q 004946 402 TYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSLQLFQE---KFPERYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFL 478 (722)
Q Consensus 402 s~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~l~~f~~---~~p~R~~d~GIaE~~av~~AaGlA~~G~~p~~~t~~~Fl 478 (722)
+=.+|++..+.+ ...+++..-+-.+.+.-++.|.+ ++..+|+++. +|++++++|.|+|+.|.||+++|.++++
T Consensus 24 ~GneAva~~~~~---ag~~~v~~yPgtP~t~i~~~l~~~~~~~g~~~i~~e-~E~~a~~~a~Gaa~aG~r~~~~ts~~G~ 99 (395)
T 1yd7_A 24 QGDEAIARAAIL---AGCRFYAGYPITPASEIFEAMALYMPLVDGVVIQME-DEIASIAAAIGASWAGAKAMTATSGPGF 99 (395)
T ss_dssp EHHHHHHHHHHH---HTCCEEEECCBTTTBCHHHHHHHHGGGGTCEEEECS-CHHHHHHHHHHHHHTTCCEEEEEETTHH
T ss_pred EHHHHHHHHHHH---cCCCEEEEEECcchHHHHHHHHHhhhhcCcEEEEeC-CHHHHHHHHHHHHHhCCcEEEEeCchHH
Confidence 445677766554 35566665555443322344544 4567899987 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCEEEEEeCCCccCC--CCCCcC-cHHHHHHhcCCC--CcEEEeeCCHHHHHHHHHHHhh---hC
Q 004946 479 QRAYDQVVNDVDQQRLPVRFVITSAGLVGS--DGPTQC-GAFDITFMSCLP--NMIVMAPSDEDELVDMVATVAS---ID 550 (722)
Q Consensus 479 ~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~--dG~TH~-~~~d~a~~~~iP--~l~V~~Psd~~E~~~~l~~a~~---~~ 550 (722)
.+++|||.+ ++..++|++++....+..+. ...+|| +..+. ++...| ++.+++|+|++|+++++.+|++ +.
T Consensus 100 ~~~~d~l~~-aa~~~~P~Vi~~~~~~~~~~g~~~~~~~sd~~~~-~~~~~g~~g~~vl~p~~~qea~~l~~~A~~lA~~~ 177 (395)
T 1yd7_A 100 SLMQENIGY-AVMTETPVVIVDVQRSGPSTGQPTLPAQGDIMQA-IWGTHGDHSLIVLSPSTVQEAFDFTIRAFNLSEKY 177 (395)
T ss_dssp HHHTTTCC-----CCCCEEEEEEC---------------------------CCCCEEECCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHhcCCCEEEEEeeCCCCCCCCCcccchhHHHHH-HhccCCCcceEEEeCCCHHHHHHHHHHHHHHHHHH
Confidence 999999865 57889998888754443221 122233 44443 445555 9999999999999999999995 34
Q ss_pred CCCEEEEecCCCc---ccccCCC---------------C---CCCCc-ccc--------cc-------------------
Q 004946 551 DRPVCFRYPRGAI---VRTDLPG---------------Y---RGIPI-EEI--------GK------------------- 581 (722)
Q Consensus 551 ~~Pv~ir~~r~~~---~~~~~p~---------------~---~~~~~-~~i--------gk------------------- 581 (722)
+.||+++++.... ...++|+ . ..+.. ++. +.
T Consensus 178 ~~PVi~~~~~~l~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~~~~~~~~h~e~g~~~~ 257 (395)
T 1yd7_A 178 RTPVILLTDAEVGHMRERVYIPNPDEIEIINRKLPRNEEEAKLPFGDPHGDGVPPMPIFGKGYRTYVTGLTHDEKGRPRT 257 (395)
T ss_dssp TSEEEEEECHHHHHCEEEEEECCGGGSCCCCCC-----------------------------------------------
T ss_pred CCCEEEEcchhHhCeeceecCCChHHhhhhcccccCCCcccccCcccCCCCCCCCCccCCCCceeEecccccccccCccc
Confidence 5899999874210 0000000 0 00000 000 00
Q ss_pred ---------------------------EEEEEeCCcEEEEEechhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHH
Q 004946 582 ---------------------------GKVLVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVR 634 (722)
Q Consensus 582 ---------------------------~~vl~eG~dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~ 634 (722)
.++.++|+|++||+||+++..|++|++.|+++|++++|||+++++|||.+.|.
T Consensus 258 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~g~dv~iva~G~~~~~~~eA~~~L~~~Gi~v~vi~~r~~~Pld~~~i~ 337 (395)
T 1yd7_A 258 VDREVHERLIKRIVEKIEKNKKDIFTYETYELEDAEIGVVATGIVARSALRAVKMLREEGIKAGLLKIETIWPFDFELIE 337 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhcCccEEecCCCCCEEEEEECccHHHHHHHHHHHHHcCCceEEEEeCeecCCCHHHHH
Confidence 01234578999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCeEEEEcCCCCCChHHHHHHHHHhcCCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHh
Q 004946 635 ELCQNHTFLITVEEGSIGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLL 711 (722)
Q Consensus 635 ~~~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~~~~~~v~~ig~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~ll 711 (722)
++++++++|+|||++. |||+++|.+.+... .++..++-.+ | .-++++.|.+.+++++
T Consensus 338 ~~~~~~~~vvvvEe~~-G~l~~~v~~~~~~~------~~~~~~gk~~-----g--------~~~~~~ei~~~i~~~~ 394 (395)
T 1yd7_A 338 RIAERVDKLYVPEMNL-GQLYHLIKEGANGK------AEVKLISKIG-----G--------EVHTPMEIFEFIRREF 394 (395)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred HHHhcCCEEEEEeCCc-hHHHHHHHHHhcCC------CCeEEEeccC-----C--------CcCCHHHHHHHHHHhh
Confidence 9999999999999998 99999998877531 1222333222 1 1267888888887654
No 29
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=99.91 E-value=8.3e-23 Score=224.75 Aligned_cols=229 Identities=11% Similarity=0.079 Sum_probs=161.7
Q ss_pred hhccCCCHHHHHHHHHH---HHHHHHHhHh--cC--CCCCCCcchHHHHHHHHhhccCCCCcEEEecCCchHHHHHHHhC
Q 004946 89 LRLKSLTIKELKQLAVE---IRSELSSIVS--KT--EKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTG 161 (722)
Q Consensus 89 ~~~~~l~~~~l~~la~e---iR~~ii~~~~--~~--gGh~~~slg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltG 161 (722)
....+++.+++.++.+. +|.+-..+.. .. -++++++.|+-.+.+++-..++ ++|.++. .|+.+++.+..|
T Consensus 47 ~~~~~~~~e~~~~~y~~M~~~r~fe~~~~~~~~~gri~~~~~~~GqEa~~vg~~~al~-~~D~v~~--~yR~~~~~~~~G 123 (400)
T 2bfd_A 47 SEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALD-NTDLVFG--QAREAGVLMYRD 123 (400)
T ss_dssp GGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCCCCTTCHHHHHHHHHTSC-TTSEEEC--CSCCHHHHHHTT
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeecCCChHHHHHHHHHhcC-CCCEEEe--cCcCHHHHHHcC
Confidence 33467788877777554 3433222222 11 1466788888656555555554 7898886 799999999999
Q ss_pred c--hhhhhHHHhh------C-CCCCCCCCCCCCCCCcCcCCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHH
Q 004946 162 R--RSLIHTLRKK------D-GISGYTSRSESEYDPFNAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAY 232 (722)
Q Consensus 162 r--~~~~~~~r~~------g-gl~g~~~~~es~~d~~~~G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~ 232 (722)
. .+.|..++.. | +.++|+...+. ....++|++|+++|+|+|+|+|.++++++++|||++|||++++|++|
T Consensus 124 ~~~~~~l~e~~g~~~g~~~G~~~~~H~~~~~~-~~~~~~g~lG~~lp~AvG~AlA~~~~~~~~~vv~~~GDGa~~~G~~~ 202 (400)
T 2bfd_A 124 YPLELFMAQCYGNISDLGKGRQMPVHYGCKER-HFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAH 202 (400)
T ss_dssp CCHHHHHHHHHTCTTCTTTTCSCSSCCCBTTT-TBCCCCSSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHH
T ss_pred CCHHHHHHHhcCCCCCCCCCCCCCcCCccccc-CccccCccccccccHHHHHHHhhhhhCCCCeEEEEECchhhhcChHH
Confidence 7 3445555542 1 13333321111 12345799999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHH
Q 004946 233 EAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEY 312 (722)
Q Consensus 233 EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~ 312 (722)
|+||+|+.+++|+|+||+||++. +.+ +...
T Consensus 203 Eal~~A~~~~lpvi~vv~NN~~~-i~~-------~~~~------------------------------------------ 232 (400)
T 2bfd_A 203 AGFNFAATLECPIIFFCRNNGYA-IST-------PTSE------------------------------------------ 232 (400)
T ss_dssp HHHHHHHHTTCCEEEEEEECSEE-TTE-------EGGG------------------------------------------
T ss_pred HHHHHHHHHCcCEEEEEECCcee-eee-------cccc------------------------------------------
Confidence 99999999999999999999872 211 1110
Q ss_pred hhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhc--CCCCCEEEEEEeeccCCCcc
Q 004946 313 ARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASL--GSMGPVLVHVVTEENRRAED 374 (722)
Q Consensus 313 ~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~--~~~~P~lI~v~T~kG~G~~~ 374 (722)
.+-.++...+++++||.++ .|||||++++.++++++.+. ..++|++|+++|.+-.|..+
T Consensus 233 --~~~~~d~~~~a~a~G~~~~-~VdG~D~~av~~a~~~A~~~ar~~~~P~lIe~~tyR~~gHs~ 293 (400)
T 2bfd_A 233 --QYRGDGIAARGPGYGIMSI-RVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHAST 293 (400)
T ss_dssp --TCSSSTTGGGTGGGTCEEE-EEETTCHHHHHHHHHHHHHHHHHHTCCEEEEEECCCCC--CC
T ss_pred --cCCCCCHHHHHHHcCCcEE-EEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeeeeCCCCC
Confidence 0001234678999999998 89999999999999877641 13789999999976555544
No 30
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=99.90 E-value=2e-22 Score=221.77 Aligned_cols=229 Identities=16% Similarity=0.099 Sum_probs=162.3
Q ss_pred cCCCHHHHHHHHHH---HHHHHHHhHh----cCCCCCCCcchHHHHHHHHhhccCCCCcEEEecCCchHHHHHHHhCch-
Q 004946 92 KSLTIKELKQLAVE---IRSELSSIVS----KTEKSLKSSLAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGRR- 163 (722)
Q Consensus 92 ~~l~~~~l~~la~e---iR~~ii~~~~----~~gGh~~~slg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltGr~- 163 (722)
.+++.+++.++.+. +|.+-..+.. +.-++++++.|+-.+.+++-..++ ++|.++. .|+.+++.+..|..
T Consensus 69 ~~~~~e~~~~~y~~M~~~R~fe~~~~~~~~qgr~~~~~~~~GqEA~~vg~~~al~-~~D~v~~--~yR~~~~~l~~g~~~ 145 (407)
T 1qs0_A 69 EDIDPQILRQGMRAMLKTRIFDSRMVVAQRQKKMSFYMQSLGEEAIGSGQALALN-RTDMCFP--TYRQQSILMARDVSL 145 (407)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCCCCTTTHHHHHHHHHHSC-TTSEEEC--CSSCHHHHHHTTCCH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCcCCCChHHHHHHHHHhcC-CCCEEEe--cccchHHHHhcCCCH
Confidence 56787777776554 3433222221 122466789999656555555554 7999884 89998888877752
Q ss_pred -hhhhHHHhhCCCCCCCCC-CCCCC------CCc-CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHH
Q 004946 164 -SLIHTLRKKDGISGYTSR-SESEY------DPF-NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEA 234 (722)
Q Consensus 164 -~~~~~~r~~ggl~g~~~~-~es~~------d~~-~~G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EA 234 (722)
+-|..+ +|...+..+. ..+.| .++ ++|++|+++|+|+|+|+|.+++++++.|||++|||++++|.+||+
T Consensus 146 ~~i~~el--~g~~~~~~~G~g~~~h~~~~~~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~vv~i~GDGa~~~G~~~Ea 223 (407)
T 1qs0_A 146 VEMICQL--LSNERDPLKGRQLPIMYSVREAGFFTISGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTA 223 (407)
T ss_dssp HHHHHHH--HTCTTCTTTTCSCTTCCCBGGGTBCCCCSSSSHHHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHH
T ss_pred HHHHHHH--hCCCCCCCCCCCceeecchhccCccccccccccchhHHHHHHHHHHHhCCCCEEEEEECCchhhcChHHHH
Confidence 222222 2222222221 11211 333 469999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhh
Q 004946 235 MSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYAR 314 (722)
Q Consensus 235 ln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~ 314 (722)
||+|+.+++|+|+||+||++. +.| +.... .+
T Consensus 224 l~~A~~~~lpvi~Vv~NN~~g-i~~-------~~~~~--------------------------~~--------------- 254 (407)
T 1qs0_A 224 LTFAHVYRAPVILNVVNNQWA-IST-------FQAIA--------------------------GG--------------- 254 (407)
T ss_dssp HHHHHHHTCCEEEEEEECSEE-TTE-------EGGGG--------------------------TT---------------
T ss_pred HHHHHHHCcCEEEEEECCCcc-eee-------ccccc--------------------------cC---------------
Confidence 999999999999999999872 111 11100 00
Q ss_pred cccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhc--CCCCCEEEEEEeeccCCCccccc
Q 004946 315 GMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASL--GSMGPVLVHVVTEENRRAEDTQK 377 (722)
Q Consensus 315 ~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~--~~~~P~lI~v~T~kG~G~~~ae~ 377 (722)
..++...++++|||.++ .|||+|++++.++++++.+. ..++|++|+++|.|++|+..++.
T Consensus 255 --~~~d~a~~a~a~G~~~~-~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~Ghs~~Dd 316 (407)
T 1qs0_A 255 --ESTTFAGRGVGCGIASL-RVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAGPHSTSDD 316 (407)
T ss_dssp --TTCCSTHHHHHTTCEEE-EEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCCSCSSTTCC
T ss_pred --CCCCHHHHHHHcCCeEE-EEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeeccCCcCCCCC
Confidence 01234668999999998 79999999999999887641 24789999999999999987763
No 31
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=99.77 E-value=8.2e-17 Score=198.27 Aligned_cols=251 Identities=13% Similarity=0.062 Sum_probs=179.2
Q ss_pred ceeecccchHHHHHHHHHHhcCCCeeEEEecHhhHHHHHHHHHHHHhcCCCCEEEEEe-CCCccCCCCCCcCcHHHHHHh
Q 004946 444 RYFDVGMAEQHAVTFSAGLACGGLKPFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVIT-SAGLVGSDGPTQCGAFDITFM 522 (722)
Q Consensus 444 R~~d~GIaE~~av~~AaGlA~~G~~p~~~t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~-~~G~~G~dG~TH~~~~d~a~~ 522 (722)
++|+...+|.++++++.|+|++|.|++++|.+..+..+.+.+ ..++..++|+|++.. |+|. +..-.++.+..|.. .
T Consensus 55 ~~v~~~esE~aA~~aaiGAa~aGaR~~t~Ts~~Gl~lm~e~l-~~~ag~~~P~Vi~va~R~g~-~~glsi~~~hsd~~-~ 131 (1231)
T 2c42_A 55 LTIREMQSEAGAAGAVHGALAAGALTTTFTASQGLLLMIPNM-YKISGELLPGVFHVTARAIA-AHALSIFGDHQDIY-A 131 (1231)
T ss_dssp CEEEECSSHHHHHHHHHHHHHTTCCEEEEECHHHHHHHHHHH-HHHHHTTCCCEEEEEECCCC-SSSBCCSCCSHHHH-T
T ss_pred eEEEecCChHHHHHHHHHHHHcCChHhhhccHHHHHHHHHHH-HHHhCCCCCEEEEECCCCcc-CCCCcCCCchhhHH-H
Confidence 799999999999999999999999999999999999999876 455667999888774 4443 21124455555643 4
Q ss_pred cCCCCcEEEeeCCHHHHHHHHHHHhhh---CCCCEEEEecCCCc----ccccCCC---------------------CCCC
Q 004946 523 SCLPNMIVMAPSDEDELVDMVATVASI---DDRPVCFRYPRGAI----VRTDLPG---------------------YRGI 574 (722)
Q Consensus 523 ~~iP~l~V~~Psd~~E~~~~l~~a~~~---~~~Pv~ir~~r~~~----~~~~~p~---------------------~~~~ 574 (722)
...+|+.|++|+|++|+++++..|++. ...||+++++.-.. ...++|+ +++.
T Consensus 132 ar~~G~~vl~pss~QEa~dl~~~Af~lAek~~~PVi~~~Dg~~~sh~~~~vev~~~~~~~~~~~~~~~~~~~~~~~~p~~ 211 (1231)
T 2c42_A 132 ARQTGFAMLASSSVQEAHDMALVAHLAAIESNVPFMHFFDGFRTSHEIQKIEVLDYADMASLVNQKALAEFRAKSMNPEH 211 (1231)
T ss_dssp TTTSSCEEEECCSHHHHHHHHHHHHHHHHHHCCCEEEEEETTTTTTCEEEEECCCHHHHHHTSCHHHHHHHHHHSCCTTS
T ss_pred HhcCCcEEEECCCHHHHHHHHHHHHHHHHHcCCCEEEEecCcccccceeeeecCCHHHHHhhcChhhhhhccccccCCCC
Confidence 557999999999999999999999653 46799999875311 1111221 0000
Q ss_pred Ccccccc------------------------------------------EE-EEEeCCcEEEEEechhhHHHHHHHHHHH
Q 004946 575 PIEEIGK------------------------------------------GK-VLVEGKDVALLGYGAMVQNCLKARALLS 611 (722)
Q Consensus 575 ~~~~igk------------------------------------------~~-vl~eG~dv~lva~Gs~v~~aleAa~~L~ 611 (722)
+. ..|. .. +-.+++|++||+||++...+++|++.|+
T Consensus 212 p~-~~g~a~~~~~~~~~~e~~~~~~~~~~~~v~~~~~k~~~~~g~~y~~~e~~g~~dAd~vIVa~Gs~~~~~~eAv~~L~ 290 (1231)
T 2c42_A 212 PH-VRGTAQNPDIYFQGREAANPYYLKVPGIVAEYMQKVASLTGRSYKLFDYVGAPDAERVIVSMGSSCETIEEVINHLA 290 (1231)
T ss_dssp CC-EESCBCCTTTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHSCCCCSEEEEECTTCSEEEEECSTHHHHHHHHHHHHH
T ss_pred ce-ecCCCcCcchhhhhHhhhhhhhHhhHHHHHHHHHHHHHHhcccccceeeecCCCCCEEEEEeCHHHHHHHHHHHHHH
Confidence 11 1111 12 3346789999999999999999999999
Q ss_pred hcCCcEEEeecCccccchHHHHHHHh-cCCCeEEEEcCCCCCC-----hHHHHHHHHHhcCCCCCCCceEEEecCCcccc
Q 004946 612 KLGIDVTVADARFCKPLDIKLVRELC-QNHTFLITVEEGSIGG-----FGSHVSHFIALDGLLDSGVKWRPIVLPDNYIE 685 (722)
Q Consensus 612 ~~Gi~v~Vidl~~lkPld~e~i~~~~-~~~~~vvvvEe~~~gG-----~gs~v~~~l~~~~~~~~~~~v~~ig~~d~f~~ 685 (722)
++|++|+||++++++|||.+.|.+++ ++.++|+|||++..+| +..+|...+.... ...++...| .|+.
T Consensus 291 ~~G~kvgvl~lr~~rPfp~~~i~~~l~~~~k~i~VvE~~~~~g~~G~pl~~dv~~al~~~~---~~~~~~~~g---r~gl 364 (1231)
T 2c42_A 291 AKGEKIGLIKVRLYRPFVSEAFFAALPASAKVITVLDRTKEPGAPGDPLYLDVCSAFVERG---EAMPKILAG---RYGL 364 (1231)
T ss_dssp TTTCCEEEEEESEEESCCHHHHHHTSCTTCCEEEEEESSCCTTCSSCHHHHHHHHHHHHHC---SCCCEEEEE---ECCG
T ss_pred hcCCceEEEEEEEeCCCCHHHHHHHHHhcCCEEEEEECCCCCCCCcccHHHHHHHHHhhcc---CCCCeEEEE---EECC
Confidence 99999999999999999999999988 6779999999985322 4455655554321 011222222 1221
Q ss_pred CCCHHHHHHHcCCCHHHHHHHHHHHhh
Q 004946 686 HASPTQQLALAGLTGHHIAATALSLLG 712 (722)
Q Consensus 686 ~g~~~~l~~~~gl~~~~I~~~i~~ll~ 712 (722)
.| --++++.|.+.+.++..
T Consensus 365 ~g--------~~~tp~~i~~~~~~l~~ 383 (1231)
T 2c42_A 365 GS--------KEFSPAMVKSVYDNMSG 383 (1231)
T ss_dssp GG--------CCCCHHHHHHHHHHHHT
T ss_pred CC--------CCCCHHHHHHHHHHhhc
Confidence 11 12688888888887654
No 32
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=99.62 E-value=1.9e-15 Score=175.38 Aligned_cols=180 Identities=13% Similarity=0.148 Sum_probs=122.4
Q ss_pred chHHHHHHHHhhccCCCCcEEEecCC-chHHHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004946 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (722)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G 203 (722)
+....+...|...+ .++|.|++|+| |+.|+++++..++. +.+ ....+.|++|+++|+|+|
T Consensus 371 l~~~~~~~~l~~~l-~~~~ivv~d~G~~~~~~~~~~~~~~~-----~~~-------------~~~~~~g~~G~~l~~A~G 431 (603)
T 4feg_A 371 LQAYQVLRAVNKIA-EPDAIYSIDVGDINLNANRHLKLTPS-----NRH-------------ITSNLFATMGVGIPGAIA 431 (603)
T ss_dssp CCHHHHHHHHHHHC-CTTCEEEECSSHHHHHHHHHCCCCTT-----CEE-------------ECCCSSCCTTCHHHHHHH
T ss_pred cCHHHHHHHHHHhC-CCCCEEEECCchHHHHHHHhceeCCC-----Cce-------------ecCcccccccchhHHHhh
Confidence 44444555554444 47889999999 88888866543211 011 111246899999999999
Q ss_pred HHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhH
Q 004946 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (722)
Q Consensus 204 ~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (722)
++++. ++++|||++|||+++ +.+++|++|+.+++|+++||.||+.. +.+. ..
T Consensus 432 aala~----~~~~vv~~~GDG~~~--~~~~~l~~a~~~~lp~~~vv~nN~~~-------------~~~~----~~----- 483 (603)
T 4feg_A 432 AKLNY----PERQVFNLAGDGGAS--MTMQDLATQVQYHLPVINVVFTNCQY-------------GFIK----DE----- 483 (603)
T ss_dssp HHHHC----TTSCEEEEEEHHHHH--HHGGGHHHHHHTTCCCEEEEEECSBC-------------HHHH----HH-----
T ss_pred HHHhC----CCCcEEEEeccHHHh--hhHHHHHHHHHHCcCeEEEEEECCch-------------HHHH----HH-----
Confidence 99984 488999999999996 66899999999999998888888741 2110 00
Q ss_pred HHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHH--hcCCCCCEE
Q 004946 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVA--SLGSMGPVL 361 (722)
Q Consensus 284 ~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~--~~~~~~P~l 361 (722)
++ .... ....+. .+-.++...++++||+.++.+ ++.++|.+++++++ + .++|++
T Consensus 484 -~~--~~~~--~~~~~~--------------~~~~~d~~~~a~a~G~~~~~v---~~~~~l~~al~~a~~~~--~~gP~l 539 (603)
T 4feg_A 484 -QE--DTNQ--NDFIGV--------------EFNDIDFSKIADGVHMQAFRV---NKIEQLPDVFEQAKAIA--QHEPVL 539 (603)
T ss_dssp -HH--HHCS--SCCCSS--------------BCCCCCHHHHHHHTTCEEEEE---CBGGGHHHHHHHHHHHT--TTSCEE
T ss_pred -HH--HhcC--CCcccC--------------cCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHHHHHHhc--CCCcEE
Confidence 00 0000 000000 011234578999999999955 57889999999998 6 589999
Q ss_pred EEEEeeccCCCccc
Q 004946 362 VHVVTEENRRAEDT 375 (722)
Q Consensus 362 I~v~T~kG~G~~~a 375 (722)
|||.|.+++.+++.
T Consensus 540 Iev~~~~~~~~~~~ 553 (603)
T 4feg_A 540 IDAVITGDRPLPAE 553 (603)
T ss_dssp EEEECCCCCCCCTT
T ss_pred EEEEeCCCCCCCcc
Confidence 99999776666543
No 33
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=99.56 E-value=5.2e-14 Score=162.09 Aligned_cols=178 Identities=13% Similarity=0.098 Sum_probs=123.2
Q ss_pred cchHHHHHHHHhhccCCCCcEEEecCCc-hHHHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHH
Q 004946 124 SLAAVELTVALHHVFHAPVDKILWDVGE-QTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGL 202 (722)
Q Consensus 124 slg~vel~~aL~~vf~~p~D~iv~d~GH-~~y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~ 202 (722)
.+....+..+|...++ +++.+++|+|+ +.|++.++..+. ..+.+...+.|++|+++|+|+
T Consensus 369 ~~~~~~~~~~l~~~l~-~~~iv~~d~G~~~~~~~~~~~~~~------------------~~~~~~~~g~g~~G~~l~~Ai 429 (563)
T 2uz1_A 369 ALHPFHASQVIAKHVD-AGVTVVADGALTYLWLSEVMSRVK------------------PGGFLCHGYLGSMGVGFGTAL 429 (563)
T ss_dssp SCCHHHHHHHHHTTCS-TTEEEEECSSHHHHHHHHHHTTSC------------------CSEEECCCTTCCTTTHHHHHH
T ss_pred CcCHHHHHHHHHHhCC-CCcEEEEcCchHHHHHHHhccccC------------------CCeEECCCCCccccChHHHHH
Confidence 3556667777766664 67888899996 567886655321 012222346799999999999
Q ss_pred HHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhh
Q 004946 203 GMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSK 282 (722)
Q Consensus 203 G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~ 282 (722)
|+|+|.+ +++++|||++|||+++ +.+++|++|+++++|+++||.||+.. +.. ..++
T Consensus 430 Gaa~a~~--~~~~~vv~i~GDG~~~--~~~~~L~ta~~~~l~~~ivv~nN~~~-------------~~~-~~~~------ 485 (563)
T 2uz1_A 430 GAQVADL--EAGRRTILVTGDGSVG--YSIGEFDTLVRKQLPLIVIIMNNQSW-------------GAT-LHFQ------ 485 (563)
T ss_dssp HHHHHHH--HHTCEEEEEEEHHHHG--GGTTHHHHHHHHTCCCEEEEEECSBC-------------HHH-HHHH------
T ss_pred HHHHHhh--CCCCeEEEEEccHHHh--CCHHHHHHHHHhCCCeEEEEEeCCcc-------------hHH-HHHH------
Confidence 9999985 4589999999999997 56889999999999987777666531 111 0000
Q ss_pred HHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEE
Q 004946 283 SFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLV 362 (722)
Q Consensus 283 ~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI 362 (722)
+. .++-....+.+ +-.++...++++||++++.+ ++.++|.++|+++.+ .++|++|
T Consensus 486 ---~~---~~~~~~~~~~~--------------~~~~d~~~~a~a~G~~~~~v---~~~~~l~~al~~a~~--~~gp~li 540 (563)
T 2uz1_A 486 ---QL---AVGPNRVTGTR--------------LENGSYHGVAAAFGADGYHV---DSVESFSAALAQALA--HNRPACI 540 (563)
T ss_dssp ---HH---HTCTTCCCSCB--------------CCCCCHHHHHHHTTCEEEEE---CSHHHHHHHHHHHHH--SSSCEEE
T ss_pred ---HH---hcCCCcccCCc--------------CCCCCHHHHHHHcCCeEEEe---CCHHHHHHHHHHHHH--CCCCEEE
Confidence 00 00000000100 11235678999999999865 689999999999987 5899999
Q ss_pred EEEeecc
Q 004946 363 HVVTEEN 369 (722)
Q Consensus 363 ~v~T~kG 369 (722)
|+.|.+.
T Consensus 541 ev~~~~~ 547 (563)
T 2uz1_A 541 NVAVALD 547 (563)
T ss_dssp EEECCSC
T ss_pred EEEeccc
Confidence 9999843
No 34
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=99.55 E-value=1.7e-14 Score=131.84 Aligned_cols=107 Identities=16% Similarity=0.277 Sum_probs=87.0
Q ss_pred EeCCcEEEEEechhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcCCCeEEEEcCCCCCChHHHHHHHHHhc
Q 004946 586 VEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIALD 665 (722)
Q Consensus 586 ~eG~dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~~~vvvvEe~~~gG~gs~v~~~l~~~ 665 (722)
.+|+|++||+||+++..|++|++.|+++|++++|+++++++|||.+.+.+++++++.|+|+|++..|||++.|...+.
T Consensus 11 ~~g~dv~iv~~Gs~~~~a~eA~~~L~~~Gi~v~vi~~r~~~P~d~~~l~~~~~~~~~vvvvE~~~~G~l~~~i~~~~~-- 88 (118)
T 3ju3_A 11 EKEADITFVTWGSQKGPILDVIEDLKEEGISANLLYLKMFSPFPTEFVKNVLSSANLVIDVESNYTAQAAQMIKLYTG-- 88 (118)
T ss_dssp CSSCSEEEEEEGGGHHHHHHHHHHHHHTTCCEEEEEECSSCSCCHHHHHHHHTTCSCCCCCCCCCCCCHHHHHHHHHC--
T ss_pred CCCCCEEEEEECccHHHHHHHHHHHHHCCCceEEEEECeEecCCHHHHHHHHcCCCEEEEEECCCCCcHHHHHHHHcC--
Confidence 367899999999999999999999999999999999999999999999999999999999999988999998876431
Q ss_pred CCCCCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHhh
Q 004946 666 GLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLG 712 (722)
Q Consensus 666 ~~~~~~~~v~~ig~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~ll~ 712 (722)
. .++..+. .+ .| .-++++.|.+.++++++
T Consensus 89 -~----~~~~~i~---~~--~G--------~~~~~~ei~~~i~~~~~ 117 (118)
T 3ju3_A 89 -I----DIKNKIL---KY--NG--------RHMTEDEILKSAKEILN 117 (118)
T ss_dssp -C----CCCCCCC---CB--TT--------BCCCHHHHHHHHHHHHH
T ss_pred -C----CceeEEe---ee--CC--------eeCCHHHHHHHHHHHhh
Confidence 1 0111111 00 11 12789999999998873
No 35
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=99.52 E-value=9.9e-14 Score=159.81 Aligned_cols=175 Identities=14% Similarity=0.145 Sum_probs=120.8
Q ss_pred chHHHHHHHHhhccCCCCcEEEecCC-chHHHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004946 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (722)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G 203 (722)
+....+..+|...++ +++.|+.|+| |+.|...++..++. .+.+...+.|++|+++|+|+|
T Consensus 371 l~~~~v~~~l~~~l~-~~~iv~~d~G~~~~~~~~~~~~~~~------------------~~~~~~~g~g~mG~~l~~AiG 431 (566)
T 1ozh_A 371 LHPLRIVRAMQDIVN-SDVTLTVDMGSFHIWIARYLYTFRA------------------RQVMISNGQQTMGVALPWAIG 431 (566)
T ss_dssp BCHHHHHHHHHHHCC-TTEEEEECSSHHHHHHHHTGGGCCC------------------SEEECCCTTCCTTCHHHHHHH
T ss_pred cCHHHHHHHHHHhCC-CCCEEEEcCcHHHHHHHHhcccCCC------------------CeEEeCCCcccccchHHHHHH
Confidence 556666666766664 6778889999 66676644321110 111222367999999999999
Q ss_pred HHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhH
Q 004946 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (722)
Q Consensus 204 ~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (722)
+|+|. ++++|||++|||+++ +.+++|++|+.+++|+++||.||+.. |.. ..+++.
T Consensus 432 aala~----~~~~vv~i~GDG~~~--~~~~~L~ta~~~~l~~~ivv~nN~~~-------------~~~-~~~~~~----- 486 (566)
T 1ozh_A 432 AWLVN----PERKVVSVSGDGGFL--QSSMELETAVRLKANVLHLIWVDNGY-------------NMV-AIQEEK----- 486 (566)
T ss_dssp HHHHS----TTSEEEEEEEHHHHH--HHTTHHHHHHHHTCCEEEEEEECSBC-------------HHH-HHHHHH-----
T ss_pred HHHhC----CCCCEEEEEcChHHh--ccHHHHHHHHHhCCCcEEEEEECCch-------------hHH-HHHHHH-----
Confidence 99995 489999999999996 67899999999999988888777631 111 000000
Q ss_pred HHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEEE
Q 004946 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVH 363 (722)
Q Consensus 284 ~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~ 363 (722)
. .. ...+ ...-.++...++++||+.++. + ++.++|.++|+++.+ .++|++||
T Consensus 487 ----~-~~----~~~~--------------~~~~~~d~~~~a~a~G~~~~~-v--~~~~el~~al~~a~~--~~gp~lie 538 (566)
T 1ozh_A 487 ----K-YQ----RLSG--------------VEFGPMDFKAYAESFGAKGFA-V--ESAEALEPTLRAAMD--VDGPAVVA 538 (566)
T ss_dssp ----H-HS----SCCS--------------CBCCCCCHHHHHHTTTSEEEE-C--CSGGGHHHHHHHHHH--SSSCEEEE
T ss_pred ----h-cC----CCcc--------------CcCCCCCHHHHHHHcCCeEEE-e--CCHHHHHHHHHHHHh--CCCCEEEE
Confidence 0 00 0000 011124567899999999985 4 578999999999987 58999999
Q ss_pred EEeeccCC
Q 004946 364 VVTEENRR 371 (722)
Q Consensus 364 v~T~kG~G 371 (722)
+.|.++..
T Consensus 539 v~~~~~~~ 546 (566)
T 1ozh_A 539 IPVDYRDN 546 (566)
T ss_dssp EEBCCTTH
T ss_pred EEeCCCcC
Confidence 99988764
No 36
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=99.51 E-value=2.4e-14 Score=164.34 Aligned_cols=177 Identities=18% Similarity=0.204 Sum_probs=115.2
Q ss_pred cchHHHHHHHHhhccCCCCcEEEecCC-chHHHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHH
Q 004946 124 SLAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGL 202 (722)
Q Consensus 124 slg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~ 202 (722)
.+....+...|...+ .+++.|++|+| |+.|...++. ... + .+.+...+.|++|+++|+|+
T Consensus 356 ~~~~~~~~~~l~~~l-~~~~ivv~d~G~~~~~~~~~~~--------------~~~-~---~~~~~~~~~g~mG~~l~~Ai 416 (549)
T 3eya_A 356 AIHPQYLAQQISHFA-ADDAIFTCDVGTPTVWAARYLK--------------MNG-K---RRLLGSFNHGSMANAMPQAL 416 (549)
T ss_dssp CBCHHHHHHHHHHHS-CTTCEEEECTTHHHHHHHHHCC--------------CCS-S---CEEECCTTTCCTTCHHHHHH
T ss_pred CcCHHHHHHHHHhhC-CCCCEEEEcCcHHHHHHHHhCc--------------cCC-C---CcEEeCCCCchhhhHHHHHH
Confidence 344444555555444 36788999999 4334332211 000 0 01111235689999999999
Q ss_pred HHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhh
Q 004946 203 GMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSK 282 (722)
Q Consensus 203 G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~ 282 (722)
|+|+|. ++++|||++|||+++ |.+++|++|+++++|+++||.||+...+-+..+. ..
T Consensus 417 Gaala~----~~~~vv~i~GDGs~~--~~~~~L~ta~~~~l~~~ivv~nN~~~g~~~~~~~-----------------~~ 473 (549)
T 3eya_A 417 GAQATE----PERQVVAMCGDGGFS--MLMGDFLSVVQMKLPVKIVVFNNSVLGFVAMEMK-----------------AG 473 (549)
T ss_dssp HHHHHS----TTSCEEEEEEHHHHH--HTGGGHHHHHHTTCCCEEEEEECSBCCCC------------------------
T ss_pred HHHHhC----CCCcEEEEEccchhh--ccHHHHHHHHHhCCCeEEEEEeCCccHHHHHHHH-----------------hc
Confidence 999985 488999999999995 7789999999999997776666653111000000 00
Q ss_pred HHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEE
Q 004946 283 SFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLV 362 (722)
Q Consensus 283 ~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI 362 (722)
. .......+-.++...++++||+++..+ ++.++|.++|+++++ .++|++|
T Consensus 474 ~-------------------------~~~~~~~~~~~d~~~~a~a~G~~~~~v---~~~~~l~~al~~a~~--~~gp~li 523 (549)
T 3eya_A 474 G-------------------------YLTDGTELHDTNFARIAEACGITGIRV---EKASEVDEALQRAFS--IDGPVLV 523 (549)
T ss_dssp ------------------------------CCBCCCCCHHHHHHHTTSEEEEE---CSGGGHHHHHHHHHH--SSSCEEE
T ss_pred C-------------------------CCCcCCcCCCCCHHHHHHHcCCcEEEe---CCHHHHHHHHHHHHh--CCCCEEE
Confidence 0 000011111245678999999999865 788999999999988 5899999
Q ss_pred EEEeeccCCC
Q 004946 363 HVVTEENRRA 372 (722)
Q Consensus 363 ~v~T~kG~G~ 372 (722)
||.|.+....
T Consensus 524 ev~~~~~~~~ 533 (549)
T 3eya_A 524 DVVVAKEELA 533 (549)
T ss_dssp EEEBCCCCSC
T ss_pred EEEecccccc
Confidence 9999876543
No 37
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=99.48 E-value=7.8e-14 Score=161.47 Aligned_cols=187 Identities=15% Similarity=0.144 Sum_probs=117.0
Q ss_pred chHHHHHHHHhhccCCCCcEEEecCCc-hHHHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004946 125 LAAVELTVALHHVFHAPVDKILWDVGE-QTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (722)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~GH-~~y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G 203 (722)
+....+...|...++ +++.++.|+|. +.|...++. . +.+ .+....-+.|++|+++|+|+|
T Consensus 377 l~~~~~~~~l~~~lp-~~~ivv~d~G~~~~~~~~~~~--------------~---~~~-~~~~~~g~~G~~G~~l~~AiG 437 (590)
T 1ybh_A 377 IPPQYAIKVLDELTD-GKAIISTGVGQHQMWAAQFYN--------------Y---KKP-RQWLSSGGLGAMGFGLPAAIG 437 (590)
T ss_dssp CCHHHHHHHHHHHTT-TCCEEEECSSHHHHHHHHSCC--------------C---SST-TSEECCCSSCCTTCHHHHHHH
T ss_pred cCHHHHHHHHHHhCC-CCCEEEEcCcHHHHHHHHhcc--------------c---CCC-CeEEeCCCcccccchHHHHHH
Confidence 444455555555443 56778889994 334431111 1 000 011112245999999999999
Q ss_pred HHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhH
Q 004946 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (722)
Q Consensus 204 ~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (722)
+|+|. ++++|||++|||+++ +.+++|++|+++++|+++||.||+.. +.. ..+++...
T Consensus 438 aala~----~~~~vv~i~GDGs~~--~~~~~L~ta~~~~l~~~ivv~NN~~~-------------~~~-~~~~~~~~--- 494 (590)
T 1ybh_A 438 ASVAN----PDAIVVDIDGDGSFI--MNVQELATIRVENLPVKVLLLNNQHL-------------GMV-MQWEDRFY--- 494 (590)
T ss_dssp HHHHC----TTSCEEEEEEHHHHH--HTTTHHHHHHHTTCCEEEEEEECSBC-------------HHH-HHHHHHHS---
T ss_pred HHHhC----CCCcEEEEEccchhh--ccHHHHHHHHHhCCCcEEEEEECCcc-------------hHH-HHHHHHhc---
Confidence 99985 478999999999997 67899999999999977777666531 111 00000000
Q ss_pred HHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEEE
Q 004946 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVH 363 (722)
Q Consensus 284 ~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~ 363 (722)
..+.....++.+.. .....++...++++||++++.+ ++.++|.++|+++++ .++|++||
T Consensus 495 ------~~~~~~~~~~~p~~----------~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~al~~a~~--~~gp~lie 553 (590)
T 1ybh_A 495 ------KANRAHTFLGDPAQ----------EDEIFPNMLLFAAACGIPAARV---TKKADLREAIQTMLD--TPGPYLLD 553 (590)
T ss_dssp ------TTCCCSCBCSCGGG----------TTSCSSCHHHHHHHTTCCEEEE---CBHHHHHHHHHHHHH--SSSCEEEE
T ss_pred ------CCcccccccccccc----------ccCCCCCHHHHHHHcCCeEEEe---CCHHHHHHHHHHHHh--CCCCEEEE
Confidence 00000000000000 0000134577999999999854 689999999999987 48999999
Q ss_pred EEeeccCCCcc
Q 004946 364 VVTEENRRAED 374 (722)
Q Consensus 364 v~T~kG~G~~~ 374 (722)
+.|.++....+
T Consensus 554 v~~~~~~~~~p 564 (590)
T 1ybh_A 554 VICPHQEHVLP 564 (590)
T ss_dssp EECCTTCCCCS
T ss_pred EEecCCcccCC
Confidence 99999887543
No 38
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=99.45 E-value=2.5e-13 Score=157.23 Aligned_cols=179 Identities=15% Similarity=0.153 Sum_probs=119.6
Q ss_pred chHHHHHHHHhhccCCCCcEEEecCC-chHHHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004946 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (722)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G 203 (722)
+....+..+|...+. +++.++.|+| |+.|...++.-. . | .+.+...+.|++|+++|+|+|
T Consensus 375 l~~~~~~~~l~~~l~-~~~iv~~d~g~~~~~~~~~~~~~--------------~-~---~~~~~~~g~g~mG~~l~~AiG 435 (589)
T 2pgn_A 375 ASMFRAMAEVRKVQR-PEDIIVTDIGNHTLPMFGGAILQ--------------R-P---RRLVTSMAEGILGCGFPMALG 435 (589)
T ss_dssp CCHHHHHHHHHHTCC-TTCEEEECSSTTHHHHHHHCCCS--------------S-T---TCEESCTTTCCTTCHHHHHHH
T ss_pred cCHHHHHHHHHHhCC-CCCEEEEcCchHHHHHHHhcccC--------------C-C---CcEECCCCcchhhhHHHHHHH
Confidence 455556666655553 5778888999 445655322110 0 0 011222356999999999999
Q ss_pred HHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhH
Q 004946 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (722)
Q Consensus 204 ~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (722)
+|+|. ++++|||++|||+++ +.+|+|++|+++++|+++||.||+.. +.. ..++
T Consensus 436 aala~----~~~~vv~i~GDG~~~--~~~~~L~ta~~~~l~~~ivv~nN~~~-------------~~~-~~~~------- 488 (589)
T 2pgn_A 436 AQLAE----PNSRVFLGTGDGALY--YHFNEFRVAVEHKLPVITMVFTNESY-------------GAN-WTLM------- 488 (589)
T ss_dssp HHHHC----TTSCEEEEEEHHHHH--HHGGGHHHHHHTTCCCEEEEEECSBC-------------HHH-HHHH-------
T ss_pred HHHhC----CCCcEEEEEeeHHHH--hhHHHHHHHHHhCCCeEEEEEECCCc-------------ccc-hHHH-------
Confidence 99985 478999999999996 66899999999999988777777631 111 0000
Q ss_pred HHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEEE
Q 004946 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVH 363 (722)
Q Consensus 284 ~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~ 363 (722)
+.. . +. .+...+-.++...++++||+.++. + ++.++|.++|+++.+ .++|++||
T Consensus 489 --~~~-~--------~~----------~~~~~~~~~d~~~~a~a~G~~~~~-v--~~~~el~~al~~a~~--~~gp~lie 542 (589)
T 2pgn_A 489 --NHQ-F--------GQ----------NNWTEFMNPDWVGIAKAFGAYGES-V--RETGDIAGALQRAID--SGKPALIE 542 (589)
T ss_dssp --HHH-H--------SS----------CCSCBCCCCCHHHHHHHHTCEEEE-C--TTTCCHHHHHHHHHH--HCSCEEEE
T ss_pred --Hhh-c--------CC----------CccccCCCCCHHHHHHHCCCeEEE-E--CCHHHHHHHHHHHHh--CCCCEEEE
Confidence 000 0 00 000011124567899999999985 4 467889999999887 48999999
Q ss_pred EEeeccCCCccc
Q 004946 364 VVTEENRRAEDT 375 (722)
Q Consensus 364 v~T~kG~G~~~a 375 (722)
+.|.++.++.+.
T Consensus 543 v~~~~~~~~~~~ 554 (589)
T 2pgn_A 543 IPVSKTQGLASD 554 (589)
T ss_dssp EECCSSSSTTTC
T ss_pred EEecCCCCcCcc
Confidence 999998877554
No 39
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=99.44 E-value=3.8e-13 Score=157.80 Aligned_cols=182 Identities=18% Similarity=0.193 Sum_probs=119.2
Q ss_pred cchHHHHHHHHhhccCC-CCcEEE-ecCC-chHHHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHH
Q 004946 124 SLAAVELTVALHHVFHA-PVDKIL-WDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSA 200 (722)
Q Consensus 124 slg~vel~~aL~~vf~~-p~D~iv-~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~ 200 (722)
.+....+...|...+.. |+|.|+ .|+| |+.|+..++.-.. .+ +....-+.|++|+++|+
T Consensus 460 ~l~~~~v~~~L~~~l~~~~~~~iv~~~vg~~~~~~~~~~~~~~-----p~-------------~~~~sg~~G~mG~~lpa 521 (677)
T 1t9b_A 460 KIKPQTVIKKLSKVANDTGRHVIVTTGVGQHQMWAAQHWTWRN-----PH-------------TFITSGGLGTMGYGLPA 521 (677)
T ss_dssp CBCHHHHHHHHHHHHHTTCSCEEEEECSSHHHHHHHHHSCCCS-----TT-------------CEECCCSSCCTTCHHHH
T ss_pred CcCHHHHHHHHHHHhhcCCCCEEEEeCCchHHHHHHHhcccCC-----CC-------------eEEeCCCcchhhchHHH
Confidence 35455555566555532 566665 4788 5556553321100 00 11111246899999999
Q ss_pred HHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhh
Q 004946 201 GLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQS 280 (722)
Q Consensus 201 A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~ 280 (722)
|+|+|+|. ++++|||++|||+++ |.+++|++|+.+++|+++||.||+.. |.. ..+++
T Consensus 522 AiGaalA~----p~~~Vv~i~GDGsf~--~~~~eL~ta~~~~l~v~ivV~NN~~~-------------g~~-~~~~~--- 578 (677)
T 1t9b_A 522 AIGAQVAK----PESLVIDIDGDASFN--MTLTELSSAVQAGTPVKILILNNEEQ-------------GMV-TQWQS--- 578 (677)
T ss_dssp HHHHHHHC----TTSEEEEEEEHHHHH--HHGGGHHHHHHHTCCCEEEEEECSSC-------------HHH-HHHHH---
T ss_pred HHHHHHhC----CCCeEEEEEeehHHh--ccHHHHHHHHHhCCCeEEEEEeCCCc-------------hhh-hhhhh---
Confidence 99999994 589999999999996 78899999999999987777666631 211 10100
Q ss_pred hhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCE
Q 004946 281 SKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPV 360 (722)
Q Consensus 281 ~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~ 360 (722)
.. +. ....+. ..-.++...++++||+.++.+ ++.++|.++|+++.+ .++|+
T Consensus 579 ------~~---~~-~~~~~~--------------~~~~~d~~~la~a~G~~~~~v---~~~~el~~al~~a~~--~~gp~ 629 (677)
T 1t9b_A 579 ------LF---YE-HRYSHT--------------HQLNPDFIKLAEAMGLKGLRV---KKQEELDAKLKEFVS--TKGPV 629 (677)
T ss_dssp ------HH---ST-TCCCSC--------------CCCCCCHHHHHHHTTCEEEEE---CSHHHHHHHHHHHHH--CSSCE
T ss_pred ------hh---cC-CCcccC--------------cCCCCCHHHHHHHcCCeEEEE---CCHHHHHHHHHHHHH--CCCcE
Confidence 00 00 000000 011245678999999999965 789999999999987 58999
Q ss_pred EEEEEeeccCCCccc
Q 004946 361 LVHVVTEENRRAEDT 375 (722)
Q Consensus 361 lI~v~T~kG~G~~~a 375 (722)
+|||.|.+++...++
T Consensus 630 lIev~~~~~~~~~p~ 644 (677)
T 1t9b_A 630 LLEVEVDKKVPVLPM 644 (677)
T ss_dssp EEEEEBCSSCCCSSB
T ss_pred EEEEEecCCcccCCc
Confidence 999999998765443
No 40
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=99.42 E-value=5.8e-13 Score=154.16 Aligned_cols=176 Identities=14% Similarity=0.103 Sum_probs=113.5
Q ss_pred chHHHHHHHHhhccCCCCcEEEecCCc-hHHHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004946 125 LAAVELTVALHHVFHAPVDKILWDVGE-QTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (722)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~GH-~~y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G 203 (722)
+....+..+|...+. +++.|+.|+|. +.|+..+ ... +.+ .+.+...+.|++|+++|+|+|
T Consensus 364 ~~~~~~~~~l~~~l~-~~~ivv~d~G~~~~~~~~~--------------~~~---~~~-~~~~~~~~~g~mG~~l~~AiG 424 (590)
T 1v5e_A 364 LQFYQVYNAINNHAD-EDAIYSIDVGNSTQTSIRH--------------LHM---TPK-NMWRTSPLFATMGIAIPGGLG 424 (590)
T ss_dssp CCHHHHHHHHHHHSC-TTCEEEECSSHHHHGGGGT--------------CCC---CTT-SEEECCCSSCCTTCHHHHHHH
T ss_pred cCHHHHHHHHHhhCC-CCCEEEECCchHHHHHHHh--------------ccc---CCC-CeEEcCCCCCcccChHHHHHH
Confidence 444455555555443 57788889994 3333211 101 100 011112367999999999999
Q ss_pred HHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhH
Q 004946 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (722)
Q Consensus 204 ~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (722)
+|+|. ++++|||++|||+++ +.+++|++|+++++|+++||.||+...+-...|... | + .+
T Consensus 425 aala~----~~~~vv~i~GDG~~~--~~~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~q~~~---~----~-~~------ 484 (590)
T 1v5e_A 425 AKNTY----PDRQVWNIIGDGAFS--MTYPDVVTNVRYNMPVINVVFSNTEYAFIKNKYEDT---N----K-NL------ 484 (590)
T ss_dssp HHHHC----TTSCEEEEEEHHHHH--HHGGGHHHHHHTTCCCEEEEEECSSCTTGGGTTSSS---C----C-SC------
T ss_pred HHHhC----CCCeEEEEEechHHh--chHHHHHHHHHhCCCCEEEEEECCchHHHHHHHHHh---c----C-CC------
Confidence 99994 488999999999997 668999999999999777776665322111111000 0 0 00
Q ss_pred HHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhc-CCCCCEEE
Q 004946 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASL-GSMGPVLV 362 (722)
Q Consensus 284 ~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~-~~~~P~lI 362 (722)
.+. .+-.++...++++||+.++.+ ++.++|.++|+++.+. ..++|++|
T Consensus 485 --------------~~~--------------~~~~~d~~~~a~a~G~~~~~v---~~~~el~~al~~a~~~~~~~gp~li 533 (590)
T 1v5e_A 485 --------------FGV--------------DFTDVDYAKIAEAQGAKGFTV---SRIEDMDRVMAEAVAANKAGHTVVI 533 (590)
T ss_dssp --------------CCC--------------CCCCCCHHHHHHHTTSEEEEE---CBHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred --------------ccc--------------cCCCCCHHHHHHHcCCEEEEE---CCHHHHHHHHHHHHHhcCCCCCEEE
Confidence 000 000134577899999999854 5789999999988762 01789999
Q ss_pred EEEeeccC
Q 004946 363 HVVTEENR 370 (722)
Q Consensus 363 ~v~T~kG~ 370 (722)
|+.|.++.
T Consensus 534 ev~~~~~~ 541 (590)
T 1v5e_A 534 DCKITQDR 541 (590)
T ss_dssp EEECCSCC
T ss_pred EEEecccc
Confidence 99998876
No 41
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=99.42 E-value=6.1e-13 Score=151.95 Aligned_cols=173 Identities=21% Similarity=0.231 Sum_probs=113.0
Q ss_pred chHHHHHHHHhhccCCCCcEEEecCC-chHHHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004946 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (722)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G 203 (722)
+....+...|...+. +++.++.|+| |+.+...++. ... + .+.+...+ |++|+++|+|+|
T Consensus 353 ~~~~~~~~~l~~~l~-~~~iv~~d~g~~~~~~~~~~~--------------~~~-~---~~~~~~~g-g~~G~~l~~A~G 412 (528)
T 1q6z_A 353 LHPETVFDTLNDMAP-ENAIYLNESTSTTAQMWQRLN--------------MRN-P---GSYYFCAA-GGLGFALPAAIG 412 (528)
T ss_dssp BCHHHHHHHHHHHSC-TTCEEEEECTTSHHHHHHHCC--------------CCS-S---SCEEECTT-CCTTSHHHHHHH
T ss_pred cCHHHHHHHHHhhCC-CCeEEEECCcccHHHHHHhcc--------------ccC-C---CcEECCCC-ccccchHHHHHH
Confidence 455555555655443 5677888998 5545542221 100 0 01111125 999999999999
Q ss_pred HHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhH
Q 004946 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (722)
Q Consensus 204 ~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (722)
+|+|. ++++|||++|||+++ +.+|+|++|+++++|+++||.||+.. +.. ..+++...
T Consensus 413 ~a~a~----~~~~vv~~~GDG~~~--~~~~~l~~a~~~~l~~~ivv~nN~~~-------------~~~-~~~~~~~~--- 469 (528)
T 1q6z_A 413 VQLAE----PERQVIAVIGDGSAN--YSISALWTAAQYNIPTIFVIMNNGTY-------------GAL-RWFAGVLE--- 469 (528)
T ss_dssp HHHHC----TTSCEEEEEEHHHHT--TTGGGHHHHHHHTCCCEEEEEECSBC-------------HHH-HHHHHHHT---
T ss_pred HHHhC----CCCcEEEEECCcHHH--hhHHHHHHHHHhCCCeEEEEEeCCcc-------------hHh-HHHHHHhc---
Confidence 99985 478999999999997 55899999999999988888777631 111 00000000
Q ss_pred HHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEEE
Q 004946 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVH 363 (722)
Q Consensus 284 ~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~ 363 (722)
. ....+. ++-..+...++++||++++ .++ +.++|.++|+++++ .++|++||
T Consensus 470 -------~---~~~~~~--------------~~~~~d~~~~a~a~G~~~~-~v~--~~~~l~~al~~a~~--~~gp~lie 520 (528)
T 1q6z_A 470 -------A---ENVPGL--------------DVPGIDFRALAKGYGVQAL-KAD--NLEQLKGSLQEALS--AKGPVLIE 520 (528)
T ss_dssp -------C---CSCCSC--------------BCCCCCHHHHHHHHTCEEE-EES--SHHHHHHHHHHHHT--CSSCEEEE
T ss_pred -------C---CCcccC--------------CCCCCCHHHHHHHcCCeEE-EeC--CHHHHHHHHHHHHH--CCCcEEEE
Confidence 0 000000 0112355789999999998 454 67899999999987 58999999
Q ss_pred EEeecc
Q 004946 364 VVTEEN 369 (722)
Q Consensus 364 v~T~kG 369 (722)
+.|.+.
T Consensus 521 v~~~~~ 526 (528)
T 1q6z_A 521 VSTVSP 526 (528)
T ss_dssp EEBCC-
T ss_pred EEecCC
Confidence 999753
No 42
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=99.42 E-value=5.2e-13 Score=154.01 Aligned_cols=128 Identities=15% Similarity=0.171 Sum_probs=92.9
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchh
Q 004946 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (722)
Q Consensus 190 ~~G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (722)
+.|++|+++|+|+|+|+|. ++++|||++|||+++ +.+++|++|+++++|+++||.||+.. +
T Consensus 434 g~g~mG~~l~~AiGaa~a~----~~~~vv~i~GDG~~~--~~~~~L~~a~~~~l~~~ivv~NN~~~-------------~ 494 (573)
T 2iht_A 434 GCSSFGYGIPAAIGAQMAR----PDQPTFLIAGDGGFH--SNSSDLETIARLNLPIVTVVVNNDTN-------------G 494 (573)
T ss_dssp SSCCTTCHHHHHHHHHHHS----TTSCEEEEEEHHHHH--HTGGGHHHHHHHTCCCEEEEEECSBC-------------H
T ss_pred CCcccccHHHHHHHHHHhC----CCCcEEEEEccHHHH--hHHHHHHHHHHhCCCeEEEEEECCcc-------------h
Confidence 5699999999999999995 478999999999997 66899999999999987776666531 1
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHH
Q 004946 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (722)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~ 349 (722)
.. ..+++ .. .... .+ . ...+-.++...++++||++++.+ ++.++|.++|+
T Consensus 495 ~~-~~~~~---------~~-~~~~----~~-----------~-~~~~~~~d~~~~a~a~G~~~~~v---~~~~~l~~al~ 544 (573)
T 2iht_A 495 LI-ELYQN---------IG-HHRS----HD-----------P-AVKFGGVDFVALAEANGVDATRA---TNREELLAALR 544 (573)
T ss_dssp HH-HHHHH---------HH-HSSC----CG-----------G-GTBCCCCCHHHHHHHTTCEEEEC---CSHHHHHHHHH
T ss_pred hh-HHHHH---------Hh-cCCC----cC-----------c-cccCCCCCHHHHHHHcCCeEEEe---CCHHHHHHHHH
Confidence 11 10100 00 0000 00 0 00111245678999999999854 68899999999
Q ss_pred HHHhcCCCCCEEEEEEeec
Q 004946 350 EVASLGSMGPVLVHVVTEE 368 (722)
Q Consensus 350 ~a~~~~~~~P~lI~v~T~k 368 (722)
++++ .++|++||+.|.+
T Consensus 545 ~a~~--~~gp~liev~~~~ 561 (573)
T 2iht_A 545 KGAE--LGRPFLIEVPVNY 561 (573)
T ss_dssp HHHT--SSSCEEEEEEBCC
T ss_pred HHHh--CCCCEEEEEECCC
Confidence 9987 5899999999987
No 43
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=99.40 E-value=4.1e-13 Score=154.54 Aligned_cols=176 Identities=12% Similarity=0.096 Sum_probs=116.1
Q ss_pred chHHHHHHHHhhccCCCCcEEEecCCchHHHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHH
Q 004946 125 LAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGM 204 (722)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G~ 204 (722)
+....+...|...+. +++.++.|+|...+.. ++... +.+ ...+...+.|++|+++|+|+|+
T Consensus 365 ~~~~~~~~~l~~~l~-~~~iv~~d~G~~~~~~--------------~~~~~---~~~-~~~~~~~~~g~mG~~l~~A~Ga 425 (563)
T 2vk8_A 365 LKQEWMWNQLGNFLQ-EGDVVIAETGTSAFGI--------------NQTTF---PNN-TYGISQVLWGSIGFTTGATLGA 425 (563)
T ss_dssp CCHHHHHHHHTTTCC-TTCEEEECTTHHHHHG--------------GGSCC---CSS-CEEECCTTTCCTTHHHHHHHHH
T ss_pred cCHHHHHHHHHHhCC-CCCEEEECCchHHHHH--------------hhcCc---CCC-CeEEcccchhhhhhHHHHHHHH
Confidence 455556666655443 5788889999533321 00001 100 0111123579999999999999
Q ss_pred HHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhHH
Q 004946 205 AVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSF 284 (722)
Q Consensus 205 A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~ 284 (722)
|+|.+.++++++|||++|||+++ |.+++|++|+.+++|+++||.||+.. +.. ....
T Consensus 426 ala~~~~~~~~~vv~~~GDG~~~--~~~~el~ta~~~~l~~~ivv~nN~~~-------------~~~-~~~~-------- 481 (563)
T 2vk8_A 426 AFAAEEIDPKKRVILFIGDGSLQ--LTVQEISTMIRWGLKPYLFVLNNDGY-------------TIQ-KLIH-------- 481 (563)
T ss_dssp HHHHHHHCTTCCEEEEEEHHHHH--HHGGGHHHHHHTTCCCEEEEEESSSC-------------HHH-HHHS--------
T ss_pred HHhCcccCCCCCEEEEEcchHhh--ccHHHHHHHHHcCCCcEEEEEECCcc-------------hhh-hhhh--------
Confidence 99998888889999999999996 78999999999999977777666531 110 0000
Q ss_pred HHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCce---EEeecCCCCHHHHHHHHH-HHHhcCCCCCE
Q 004946 285 RQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLY---YIGPVDGHNIEDLISVLQ-EVASLGSMGPV 360 (722)
Q Consensus 285 ~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~---~~~~vdGhd~~~l~~al~-~a~~~~~~~P~ 360 (722)
+... .+ .++-.++...++++||+. ++. + ++.++|.++|+ ++.+. .++|+
T Consensus 482 --------------~~~~--------~~-~~~~~~d~~~~a~a~G~~~~~~~~-v--~~~~el~~al~~~a~~~-~~~p~ 534 (563)
T 2vk8_A 482 --------------GPKA--------QY-NEIQGWDHLSLLPTFGAKDYETHR-V--ATTGEWDKLTQDKSFND-NSKIR 534 (563)
T ss_dssp --------------CTTC--------GG-GCCCCCCGGGHHHHTTCSSEEEEE-E--CBHHHHHHHHTCTTTTS-CSSEE
T ss_pred --------------CCCC--------Cc-ccCCCCCHHHHHHHhCCCCCcEEE-e--cCHHHHHHHHHHHHHhC-CCCcE
Confidence 0000 00 011123567899999998 764 4 47899999998 77652 24799
Q ss_pred EEEEEeeccC
Q 004946 361 LVHVVTEENR 370 (722)
Q Consensus 361 lI~v~T~kG~ 370 (722)
+||++|.+..
T Consensus 535 liev~~~~~~ 544 (563)
T 2vk8_A 535 MIEVMLPVFD 544 (563)
T ss_dssp EEEEECCTTC
T ss_pred EEEEEeCccc
Confidence 9999997553
No 44
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=99.40 E-value=7.7e-13 Score=153.90 Aligned_cols=187 Identities=16% Similarity=0.106 Sum_probs=114.7
Q ss_pred chHHHHHHHHhhccCCCCcEEEecCC-chHHHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004946 125 LAAVELTVALHHVFHAPVDKILWDVG-EQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (722)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~G-H~~y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G 203 (722)
+....+..+|...+. +++.|+.|+| |+.|+...+.-+ .+ ......-+.|++|+++|+|+|
T Consensus 393 ~~~~~~~~~L~~~l~-~~~ivv~d~G~~~~~~~~~~~~~-----------------~~-~~~~~~g~~G~~G~~l~~AiG 453 (616)
T 2pan_A 393 VKPQRVYEEMNKAFG-RDVCYVTTIGLSQIAAAQMLHVF-----------------KD-RHWINCGQAGPLGWTIPAALG 453 (616)
T ss_dssp BCHHHHHHHHHHHSC-TTEEEEECSSHHHHHHHHHCCCC-----------------ST-TSEEECTTTCCTTCHHHHHHH
T ss_pred cCHHHHHHHHHHhCC-CCcEEEEcCcHHHHHHHHhcccC-----------------CC-CeEEcCCCcccccchHHHHHH
Confidence 555555555655553 5677778999 554554222110 00 011111246999999999999
Q ss_pred HHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhH
Q 004946 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKS 283 (722)
Q Consensus 204 ~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~ 283 (722)
+|+|. ++++|||++|||+++ +.+++|++|+.+++|+++||.||+.. | +...+++.....
T Consensus 454 aala~----~~~~vv~i~GDGs~~--~~~~~L~ta~~~~l~~~ivv~NN~~~-------------~-~~~~~~~~~~~~- 512 (616)
T 2pan_A 454 VCAAD----PKRNVVAISGDFDFQ--FLIEELAVGAQFNIPYIHVLVNNAYL-------------G-LIRQSQRAFDMD- 512 (616)
T ss_dssp HHHHC----TTCEEEEEEEHHHHH--HTGGGHHHHHHTTCCCEEEEEECSBC-------------H-HHHHHGGGGTCC-
T ss_pred HHHhC----CCCcEEEEEcchhhh--CCHHHHHHHHHhCCCeEEEEEECCcc-------------h-HHHHHHHHhcCC-
Confidence 99995 488999999999997 67899999999999987777666531 1 100010000000
Q ss_pred HHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHh----cCCCCC
Q 004946 284 FRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVAS----LGSMGP 359 (722)
Q Consensus 284 ~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~----~~~~~P 359 (722)
.+. +.-.. +.... -......+...++++||++|+.+ ++.++|.++|+++.+ . ++|
T Consensus 513 ---~~~--~~~~~--~~~~~---------~~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~al~~a~~~~~~~--~gp 571 (616)
T 2pan_A 513 ---YCV--QLAFE--NINSS---------EVNGYGVDHVKVAEGLGCKAIRV---FKPEDIAPAFEQAKALMAQY--RVP 571 (616)
T ss_dssp ---CSC--BCCCC--CTTCG---------GGTTCCCCHHHHHHHTTCEEEEE---CSGGGHHHHHHHHHHHHHHH--CSC
T ss_pred ---ccc--ccccc--ccccc---------cCCCCCCCHHHHHHHcCCeEEEE---CCHHHHHHHHHHHHhhcccC--CCc
Confidence 000 00000 00000 00000134577999999999964 578899999988765 3 789
Q ss_pred EEEEEEeeccCCC
Q 004946 360 VLVHVVTEENRRA 372 (722)
Q Consensus 360 ~lI~v~T~kG~G~ 372 (722)
++||+.|.+++-.
T Consensus 572 ~lIev~~~~~~~~ 584 (616)
T 2pan_A 572 VVVEVILERVTNI 584 (616)
T ss_dssp EEEEEEBCSCCCC
T ss_pred EEEEEEecccccC
Confidence 9999999988743
No 45
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=99.39 E-value=5.7e-13 Score=152.98 Aligned_cols=171 Identities=15% Similarity=0.141 Sum_probs=113.0
Q ss_pred chHHHHHHHHhhccCCCCcEEEecCCchHHHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHH
Q 004946 125 LAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGM 204 (722)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G~ 204 (722)
+....+...|...++ +++.|+.|+|...+.... ... +.+ ...+...+.|++|+++|+|+|+
T Consensus 360 ~~~~~~~~~l~~~l~-~~~ivv~d~G~~~~~~~~--------------~~~---~~~-~~~~~~~~~g~mG~~l~~A~G~ 420 (552)
T 1ovm_A 360 LTQENFWRTLQTFIR-PGDIILADQGTSAFGAID--------------LRL---PAD-VNFIVQPLWGSIGYTLAAAFGA 420 (552)
T ss_dssp CCHHHHHHHHHHHCC-TTCEEEECTTHHHHHHTT--------------CCC---CSS-CEEECCTTTCCTTHHHHHHHHH
T ss_pred cCHHHHHHHHHHhcC-CCCEEEECCchHHHHHHh--------------ccc---CCC-CeEEechhhHhhhhHHHHHHHH
Confidence 445555555655553 678888999953332210 001 100 0111123679999999999999
Q ss_pred HHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhHH
Q 004946 205 AVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSF 284 (722)
Q Consensus 205 A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~ 284 (722)
|+|. ++++|||++|||+++ |.+++|++|+++++|+++||.||+.. +.. ....
T Consensus 421 a~a~----~~~~vv~~~GDG~~~--~~~~el~ta~~~~l~~~ivv~nN~~~-------------~~~-~~~~-------- 472 (552)
T 1ovm_A 421 QTAC----PNRRVIVLTGDGAAQ--LTIQELGSMLRDKQHPIILVLNNEGY-------------TVE-RAIH-------- 472 (552)
T ss_dssp HHHC----TTSCEEEEEEHHHHH--HHTTHHHHHHHTTCCCEEEEEESSSC-------------HHH-HHHS--------
T ss_pred HHhC----CCCcEEEEECchHHH--hHHHHHHHHHHhCCCCEEEEEECCCC-------------eEE-Eeec--------
Confidence 9994 478999999999996 78999999999998877777666531 110 0000
Q ss_pred HHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCc----eEEeecCCCCHHHHHHHHHHHHhcCCCCCE
Q 004946 285 RQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGL----YYIGPVDGHNIEDLISVLQEVASLGSMGPV 360 (722)
Q Consensus 285 ~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~----~~~~~vdGhd~~~l~~al~~a~~~~~~~P~ 360 (722)
|... .+ ..+-.++...++++||+ ++..+ ++.++|.++|+++++ .++|+
T Consensus 473 --------------~~~~--------~~-~~~~~~d~~~~a~a~G~~~~~~~~~v---~~~~~l~~al~~a~~--~~gp~ 524 (552)
T 1ovm_A 473 --------------GAEQ--------RY-NDIALWNWTHIPQALSLDPQSECWRV---SEAEQLADVLEKVAH--HERLS 524 (552)
T ss_dssp --------------CTTC--------GG-GCCCCCCGGGSTTTSCSSCCEEEEEE---CBHHHHHHHHHHHTT--CSSEE
T ss_pred --------------cCCC--------Cc-ccCCCCCHHHHHHHhCCCcCCCEEEe---CCHHHHHHHHHHHHh--CCCCE
Confidence 0000 00 01112355789999999 88744 579999999999876 58899
Q ss_pred EEEEEeeccC
Q 004946 361 LVHVVTEENR 370 (722)
Q Consensus 361 lI~v~T~kG~ 370 (722)
+||+.|.+..
T Consensus 525 liev~~~~~~ 534 (552)
T 1ovm_A 525 LIEVMLPKAD 534 (552)
T ss_dssp EEEEECCTTC
T ss_pred EEEEEcCccc
Confidence 9999998653
No 46
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=99.36 E-value=2e-12 Score=148.96 Aligned_cols=171 Identities=13% Similarity=0.174 Sum_probs=113.3
Q ss_pred chHHHHHHHHhhccCCCCcEEEecCCchHHHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHH
Q 004946 125 LAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGM 204 (722)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G~ 204 (722)
+....+...|...+. +++.++.|+|...+....+. . +.+ ...+...+.|++|+++|+|+|+
T Consensus 361 l~~~~~~~~l~~~l~-~~~iv~~d~G~~~~~~~~~~--------------~---~~~-~~~~~~~~~g~mG~~l~~A~G~ 421 (566)
T 2vbi_A 361 LTNDEIVRHINALLT-SNTTLVAETGDSWFNAMRMT--------------L---PRG-ARVELEMQWGHIGWSVPSAFGN 421 (566)
T ss_dssp CCHHHHHHHHHHHCC-TTEEEEECSSHHHHHHHTCC--------------C---CTT-CEEECCTTTCCTTTHHHHHHHH
T ss_pred cCHHHHHHHHHHhcC-CCCEEEECCchHHHhhhheE--------------C---CCC-CEEEecCcccchhhHHHHHHHH
Confidence 455555556655443 56778889995444331111 0 000 0011112568999999999999
Q ss_pred HHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhHH
Q 004946 205 AVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSF 284 (722)
Q Consensus 205 A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~ 284 (722)
|+|. ++++|||++|||+++ +.+++|++|+++++|+++||.||+...+ .+. + + ...|
T Consensus 422 ala~----~~~~vv~~~GDG~~~--~~~~eL~ta~~~~l~~~ivv~nN~~~~~----------~~~----~---~-~~~~ 477 (566)
T 2vbi_A 422 AMGS----QDRQHVVMVGDGSFQ--LTAQEVAQMVRYELPVIIFLINNRGYVI----------EIA----I---H-DGPY 477 (566)
T ss_dssp HHTC----TTSEEEEEEEHHHHH--HHGGGHHHHHHTTCCCEEEEEECSSCHH----------HHT----T---S-CCGG
T ss_pred HHhC----CCCcEEEEEcchHHH--hhHHHHHHHHHhCCCcEEEEEECCcceE----------EEe----e---c-cCCc
Confidence 9984 489999999999996 6789999999999887766655543110 000 0 0 0000
Q ss_pred HHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCc-----eEEeecCCCCHHHHHHHHHHHHhcCCCCC
Q 004946 285 RQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGL-----YYIGPVDGHNIEDLISVLQEVASLGSMGP 359 (722)
Q Consensus 285 ~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~-----~~~~~vdGhd~~~l~~al~~a~~~~~~~P 359 (722)
.+.-..+...++++||+ .++.+ ++.++|.++|+++.+. .++|
T Consensus 478 -----------------------------~~~~~~d~~~~a~a~G~~~~~~~~~~v---~~~~el~~al~~a~~~-~~gp 524 (566)
T 2vbi_A 478 -----------------------------NYIKNWDYAGLMEVFNAGEGHGLGLKA---TTPKELTEAIARAKAN-TRGP 524 (566)
T ss_dssp -----------------------------GCCCCCCTTTHHHHHHTTTCCCEEEEE---CSHHHHHHHHHHHHHC-CSSC
T ss_pred -----------------------------cCCCCCCHHHHHHHcCCCCCCccEEEe---CCHHHHHHHHHHHHhc-CCCc
Confidence 00112345789999999 98854 5799999999999872 2799
Q ss_pred EEEEEEeeccCC
Q 004946 360 VLVHVVTEENRR 371 (722)
Q Consensus 360 ~lI~v~T~kG~G 371 (722)
++||++|.++..
T Consensus 525 ~liev~~~~~~~ 536 (566)
T 2vbi_A 525 TLIECQIDRTDC 536 (566)
T ss_dssp EEEEEECCTTCC
T ss_pred EEEEEEeCcccC
Confidence 999999987754
No 47
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=99.35 E-value=1.9e-12 Score=149.28 Aligned_cols=171 Identities=16% Similarity=0.106 Sum_probs=111.0
Q ss_pred chHHHHHHHHhhccCCCCcEEEecCCchHHHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHH
Q 004946 125 LAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGM 204 (722)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G~ 204 (722)
+....+..+|...+. +++.|+.|+|...+... +... +.+ ...+..-+.|++|+++|+|+|+
T Consensus 377 ~~~~~~~~~l~~~l~-~~~iv~~d~G~~~~~~~--------------~~~~---~~~-~~~~~~~~~g~mG~~l~~A~Ga 437 (570)
T 2vbf_A 377 LSQDRLWQAVESLTQ-SNETIVAEQGTSFFGAS--------------TIFL---KSN-SRFIGQPLWGSIGYTFPAALGS 437 (570)
T ss_dssp CCHHHHHHHHHHHCC-SSEEEEECTTHHHHHHT--------------TSCC---CTT-CEEECCTTTCCTTTHHHHHHHH
T ss_pred cCHHHHHHHHHHhcC-CCCEEEEeCCHHHHHHH--------------hccc---CCC-CeEecCccchhhhhhHHHHHHH
Confidence 455555555655543 56778889996333210 0000 100 0111112569999999999999
Q ss_pred HHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhHH
Q 004946 205 AVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSF 284 (722)
Q Consensus 205 A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~ 284 (722)
|+|. ++++|||++|||+++ +.+++|++|.++++|+++||.||+.. |.. ..+... ..
T Consensus 438 ala~----~~~~vv~~~GDG~~~--~~~~eL~ta~~~~l~~~ivv~nN~~~-------------~~~-~~~~~~--~~-- 493 (570)
T 2vbf_A 438 QIAD----KESRHLLFIGDGSLQ--LTVQELGLSIREKLNPICFIINNDGY-------------TVE-REIHGP--TQ-- 493 (570)
T ss_dssp HHHC----TTSEEEEEEEHHHHH--HHGGGHHHHHHTTCCCEEEEEESSSC-------------HHH-HHHSCT--TC--
T ss_pred HHhC----CCCcEEEEEcchhhh--cCHHHHHHHHHcCCCCEEEEEECCch-------------HHH-HHHhcc--CC--
Confidence 9994 489999999999996 67899999999999877777666531 111 000000 00
Q ss_pred HHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCce-----EEeecCCCCHHHHHHHHHHH-HhcCCCC
Q 004946 285 RQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLY-----YIGPVDGHNIEDLISVLQEV-ASLGSMG 358 (722)
Q Consensus 285 ~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~-----~~~~vdGhd~~~l~~al~~a-~~~~~~~ 358 (722)
.+ .+.-.++...++++||+. +..+ ++.++|.++|+++ .+ .++
T Consensus 494 --------------------------~~-~~~~~~d~~~~a~a~G~~~~~~~~~~v---~~~~el~~al~~a~~~--~~~ 541 (570)
T 2vbf_A 494 --------------------------SY-NDIPMWNYSKLPETFGATEDRVVSKIV---RTENEFVSVMKEAQAD--VNR 541 (570)
T ss_dssp --------------------------GG-GCCCCCCGGGHHHHTTCCTTTEEEEEE---CBHHHHHHHHHHHHHC--TTS
T ss_pred --------------------------Cc-cCCCCCCHHHHHHHcCCCcCCcceEEe---cCHHHHHHHHHHHHhc--CCC
Confidence 00 011124567899999998 6644 6799999999984 54 578
Q ss_pred CEEEEEEeeccC
Q 004946 359 PVLVHVVTEENR 370 (722)
Q Consensus 359 P~lI~v~T~kG~ 370 (722)
|++||+.|.+..
T Consensus 542 p~liev~~~~~~ 553 (570)
T 2vbf_A 542 MYWIELVLEKED 553 (570)
T ss_dssp EEEEEEECCTTC
T ss_pred cEEEEEEcCccc
Confidence 999999997654
No 48
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=99.34 E-value=2.2e-12 Score=148.72 Aligned_cols=171 Identities=13% Similarity=0.175 Sum_probs=112.8
Q ss_pred chHHHHHHHHhhccCCCCcEEEecCCchHHHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHHH
Q 004946 125 LAAVELTVALHHVFHAPVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLGM 204 (722)
Q Consensus 125 lg~vel~~aL~~vf~~p~D~iv~d~GH~~y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G~ 204 (722)
+....+...|...+. +++.++.|+|...|....+. . +.+ ...+...+.|++|+++|+|+|+
T Consensus 365 ~~~~~~~~~l~~~l~-~~~iv~~d~G~~~~~~~~~~--------------~---~~~-~~~~~~~~~g~~G~~l~~A~G~ 425 (568)
T 2wvg_A 365 LVNAEIARQVEALLT-PNTTVIAETGDSWFNAQRMK--------------L---PNG-ARVEYEMQWGHIGWSVPAAFGY 425 (568)
T ss_dssp CCHHHHHHHHHTTCC-TTEEEEECSSHHHHHHHTCC--------------C---CTT-CEEECCTTTCCTTTHHHHHHHH
T ss_pred cCHHHHHHHHHHhCC-CCCEEEEcCcHHHHHHhhcc--------------c---CCC-CeEEeCCCcchhhhHHHHHHHH
Confidence 555556666655543 56778889995344331111 0 000 0111112568999999999999
Q ss_pred HHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhhhhhhhhhhHH
Q 004946 205 AVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSSTLSRIQSSKSF 284 (722)
Q Consensus 205 A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~l~~~~~~~~~ 284 (722)
|+|. ++++|||++|||+++ +.+++|++|.++++|+++||.||+.. +.. ..+ + ...|
T Consensus 426 ala~----~~~~vv~i~GDGs~~--~~~~el~ta~~~~l~~~ivv~NN~~~-------------~~~-~~~---~-~~~~ 481 (568)
T 2wvg_A 426 AVGA----PERRNILMVGDGSFQ--LTAQEVAQMVRLKLPVIIFLINNYGY-------------TIE-VMI---H-DGPY 481 (568)
T ss_dssp HHHC----TTSEEEEEEEHHHHH--HHGGGHHHHHHTTCCCEEEEEECSSC-------------HHH-HTT---S-CCGG
T ss_pred HHhC----CCCcEEEEEcChhHh--ccHHHHHHHHHcCCCcEEEEEECCcc-------------eEe-eee---c-cCCC
Confidence 9995 489999999999996 78999999999998877666555431 100 000 0 0000
Q ss_pred HHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCc---------eEEeecCCCCHHHHHHHHHHHHhcC
Q 004946 285 RQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGL---------YYIGPVDGHNIEDLISVLQEVASLG 355 (722)
Q Consensus 285 ~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~---------~~~~~vdGhd~~~l~~al~~a~~~~ 355 (722)
.+.-.++...++++||+ .+... ++.++|.++|+++.+.
T Consensus 482 -----------------------------~~~~~~d~~~~a~a~G~~~~~~~~~~~~~~v---~~~~el~~al~~a~~~- 528 (568)
T 2wvg_A 482 -----------------------------NNIKNWDYAGLMEVFNGNGGYDSGAGKGLKA---KTGGELAEAIKVALAN- 528 (568)
T ss_dssp -----------------------------GCCCCCCHHHHHHHHHCTTSSSCCCCEEEEE---SBHHHHHHHHHHHHHC-
T ss_pred -----------------------------cCCCCCCHHHHHHHhCCCcccccCCcceEEe---CCHHHHHHHHHHHHhc-
Confidence 00111345678999999 78744 6889999999999872
Q ss_pred CCCCEEEEEEeeccCC
Q 004946 356 SMGPVLVHVVTEENRR 371 (722)
Q Consensus 356 ~~~P~lI~v~T~kG~G 371 (722)
.++|++||+.|.++..
T Consensus 529 ~~gp~liev~~~~~~~ 544 (568)
T 2wvg_A 529 TDGPTLIECFIGREDC 544 (568)
T ss_dssp CSSCEEEEEECCTTCC
T ss_pred CCCcEEEEEEcCcccc
Confidence 2799999999987754
No 49
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=99.33 E-value=1.5e-11 Score=141.63 Aligned_cols=176 Identities=10% Similarity=0.008 Sum_probs=113.7
Q ss_pred chHHHHHHHHhhccC-CCCcEEEecCCchHHHHHHHhCchhhhhHHHhhCCCCCCCCCCCCCCCCcCcCCCcchHHHHHH
Q 004946 125 LAAVELTVALHHVFH-APVDKILWDVGEQTYAHKILTGRRSLIHTLRKKDGISGYTSRSESEYDPFNAGHGCNSVSAGLG 203 (722)
Q Consensus 125 lg~vel~~aL~~vf~-~p~D~iv~d~GH~~y~h~~ltGr~~~~~~~r~~ggl~g~~~~~es~~d~~~~G~~G~~ls~A~G 203 (722)
+....+...|...++ .+++.++.|.||+.+....+... . .|.. ....-+.|++|+++|+|+|
T Consensus 370 ~~~~~~~~~l~~~l~~~~d~ivv~dg~~~~~~~~~~~~~-------------~-~p~~---~~~~g~~g~~G~~l~~AiG 432 (564)
T 2q28_A 370 LNYFNALSAVRDVLRENQDIYLVNEGANTLDNARNIIDM-------------Y-KPRR---RLDCGTWGVMGIGMGYAIG 432 (564)
T ss_dssp BCHHHHHHHHHHHHTTCTTCEEEEESSHHHHHHHHHSCC-------------C-SSSC---EEESTTTTCTTCHHHHHHH
T ss_pred cCHHHHHHHHHHHhcCCCCEEEEECCchHHHHHHHHhcc-------------c-CCCe---EecCCCCCcccchHHHHHH
Confidence 555556666665553 23455556777766533221100 0 0110 0111245899999999999
Q ss_pred HHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCC-CCCCCccCCCCcchhhhhhhhhhhhhhh
Q 004946 204 MAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRH-SLHPKIEESPKTSINALSSTLSRIQSSK 282 (722)
Q Consensus 204 ~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~-~s~~t~~~~~~~~~g~l~~~l~~~~~~~ 282 (722)
+|+| ++++|||++|||+++ |.+++|++|.++++|+++||.||+. ..+ +..+. ..+.. .
T Consensus 433 aa~a-----~~~~vv~i~GDGsf~--~~~~el~ta~~~~l~~~ivv~NN~~~~~~-~~~~~---~~~~~------~---- 491 (564)
T 2q28_A 433 ASVT-----SGSPVVAIEGDSAFG--FSGMEIETICRYNLPVTIVIFNNGGIYRG-DGVDL---SGAGA------P---- 491 (564)
T ss_dssp HHHH-----HCSCEEEEEEHHHHH--TTGGGHHHHHHTTCCEEEEEEECSBSSCS-CCCCT---TSSCC------C----
T ss_pred Hhhc-----CCCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCchhHHH-HHHHH---hccCC------c----
Confidence 9998 478999999999996 7789999999999998888877763 111 10000 00000 0
Q ss_pred HHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEE
Q 004946 283 SFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLV 362 (722)
Q Consensus 283 ~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI 362 (722)
. + . ...-.++...++++||+.+..+ ++.++|.++|+++.+ .++|++|
T Consensus 492 ------------~---~--~-----------~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~al~~a~~--~~~p~li 538 (564)
T 2q28_A 492 ------------S---P--T-----------DLLHHARYDKLMDAFRGVGYNV---TTTDELRHALTTGIQ--SRKPTII 538 (564)
T ss_dssp ------------C---T--T-----------BCCTTCCGGGGGGGGTCEEEEE---CSHHHHHHHHHHHHH--HTSCEEE
T ss_pred ------------c---c--c-----------ccCCCCCHHHHHHHcCCeEEEe---CCHHHHHHHHHHHHh--CCCCEEE
Confidence 0 0 0 0000134578999999999865 689999999999886 4889999
Q ss_pred EEEeeccCC
Q 004946 363 HVVTEENRR 371 (722)
Q Consensus 363 ~v~T~kG~G 371 (722)
|+.|.+...
T Consensus 539 ev~~~~~~~ 547 (564)
T 2q28_A 539 NVVIDPAAG 547 (564)
T ss_dssp EEEBCTTSS
T ss_pred EEEeccccC
Confidence 999986643
No 50
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=99.32 E-value=6.7e-12 Score=145.64 Aligned_cols=130 Identities=16% Similarity=0.164 Sum_probs=92.3
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchh
Q 004946 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (722)
Q Consensus 190 ~~G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (722)
|.|.+|+++|+|+|+|+|. +++|||++|||+++ +.+++|++|+++++|+++||.||+...+ .+
T Consensus 453 G~~~ig~~l~~AiGaala~-----~~~vv~i~GDGsf~--~~~~eL~ta~~~~lp~~ivv~NN~~~~i----------~~ 515 (604)
T 2x7j_A 453 GANGIDGVVSSAMGVCEGT-----KAPVTLVIGDLSFY--HDLNGLLAAKKLGIPLTVILVNNDGGGI----------FS 515 (604)
T ss_dssp TTCCSSSHHHHHHHHHHHH-----TSCEEEEEEHHHHH--HTGGGGHHHHHHCCCEEEEEEECSSCGG----------GG
T ss_pred CcCCcCcHHHHHHHHHhcC-----CCcEEEEEccHHHH--hHHHHHHHhhhcCCCeEEEEEeCCCCcc----------cc
Confidence 4578899999999999993 68999999999996 6678999999999998877766653111 11
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHH
Q 004946 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (722)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~ 349 (722)
.+...+....| +++......++...++++||+.++.+ ++.++|.++|+
T Consensus 516 ----~~~~~q~~~~~-------------------------~~~~~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~al~ 563 (604)
T 2x7j_A 516 ----FLPQASEKTHF-------------------------EDLFGTPTGLDFKHAAALYGGTYSCP---ASWDEFKTAYA 563 (604)
T ss_dssp ----GSGGGSCHHHH-------------------------HHHTTCCCCCCTHHHHHHTTCEEECC---SSHHHHHHHCC
T ss_pred ----cCCCCccchhh-------------------------HhhccCCCCCCHHHHHHHcCCeEEec---CCHHHHHHHHH
Confidence 01111100011 01111111245688999999999854 57899999998
Q ss_pred HHHhcCCCCCEEEEEEeeccC
Q 004946 350 EVASLGSMGPVLVHVVTEENR 370 (722)
Q Consensus 350 ~a~~~~~~~P~lI~v~T~kG~ 370 (722)
++.+ .++|++|||.|.++.
T Consensus 564 ~a~~--~~gp~liev~~~~~~ 582 (604)
T 2x7j_A 564 PQAD--KPGLHLIEIKTDRQS 582 (604)
T ss_dssp CCCS--SCCEEEEEEECCHHH
T ss_pred HHHh--CCCCEEEEEECCccc
Confidence 8876 589999999997654
No 51
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=99.29 E-value=1.8e-11 Score=141.11 Aligned_cols=126 Identities=11% Similarity=0.080 Sum_probs=93.9
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCC-CCCCCccCCCCcch
Q 004946 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRH-SLHPKIEESPKTSI 268 (722)
Q Consensus 190 ~~G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~-~s~~t~~~~~~~~~ 268 (722)
+.|++|+++|+|+|+|+| ++++|||++|||+++ |.+++|++|.++++|+++||.||+. ... +..+. .
T Consensus 424 ~~g~~G~~l~~AiGaala-----~~~~vv~i~GDGsf~--~~~~el~ta~~~~l~~~ivv~NN~~~~~~-~~~~~----~ 491 (568)
T 2c31_A 424 TWGVMGIGMGYCVAAAAV-----TGKPVIAVEGDSAFG--FSGMELETICRYNLPVTVIIMNNGGIYKG-NEADP----Q 491 (568)
T ss_dssp TTTCSSCHHHHHHHHHHH-----HCSCEEEEEEHHHHH--TTGGGHHHHHHTTCCEEEEEEESSBSSCS-CCCCS----B
T ss_pred CCccccccHHHHHHHHhC-----CCCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCchhHHH-HHHHh----h
Confidence 458999999999999998 378999999999996 7899999999999998888877763 111 10000 0
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHH
Q 004946 269 NALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVL 348 (722)
Q Consensus 269 g~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al 348 (722)
+.. . . + . ..-.++...++++||+.+..+ ++.++|.++|
T Consensus 492 ~~~------~----------------~---~-------------~-~~~~~d~~~~a~a~G~~~~~v---~~~~el~~al 529 (568)
T 2c31_A 492 PGV------I----------------S---C-------------T-RLTRGRYDMMMEAFGGKGYVA---NTPAELKAAL 529 (568)
T ss_dssp TTB------C----------------C---T-------------T-BCCCCCHHHHHHTTTCEEEEE---SSHHHHHHHH
T ss_pred cCC------c----------------c---c-------------C-cCCCCCHHHHHHHcCCeEEEe---CCHHHHHHHH
Confidence 000 0 0 0 0 001134577899999999865 6899999999
Q ss_pred HHHHhcCCCCCEEEEEEeeccCC
Q 004946 349 QEVASLGSMGPVLVHVVTEENRR 371 (722)
Q Consensus 349 ~~a~~~~~~~P~lI~v~T~kG~G 371 (722)
+++.+ .++|++||+.|.+...
T Consensus 530 ~~a~~--~~~p~liev~~~~~~~ 550 (568)
T 2c31_A 530 EEAVA--SGKPCLINAMIDPDAG 550 (568)
T ss_dssp HHHHH--HTSCEEEEEEBCTTSS
T ss_pred HHHHh--CCCCEEEEEEeccccC
Confidence 99886 4889999999987654
No 52
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=99.27 E-value=9.8e-12 Score=143.15 Aligned_cols=124 Identities=18% Similarity=0.176 Sum_probs=92.0
Q ss_pred CcCCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchh
Q 004946 190 NAGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSIN 269 (722)
Q Consensus 190 ~~G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g 269 (722)
+.|.+|+++|+|+|+|+|. ++++|||++|||+++ |.+++|++|+++++|+++||.||+.. +
T Consensus 420 ~~g~mG~~l~~A~G~ala~----~~~~vv~i~GDG~~~--~~~~~l~ta~~~~l~~~ivv~nN~~~-------------~ 480 (565)
T 2nxw_A 420 YYAGMGFGVPAGIGAQCVS----GGKRILTVVGDGAFQ--MTGWELGNCRRLGIDPIVILFNNASW-------------E 480 (565)
T ss_dssp TTCCTTCHHHHHHHHHHHT----TTCCEEEEEEHHHHH--HHGGGGGGHHHHTCCCEEEEEECSBC-------------H
T ss_pred ccccccccchHHHHHHHhC----CCCcEEEEEechHHH--hhHHHHHHHHHhCCCCEEEEEECCCC-------------c
Confidence 4589999999999999995 478999999999997 99999999999998877666555531 1
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHH
Q 004946 270 ALSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQ 349 (722)
Q Consensus 270 ~l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~ 349 (722)
.+. ..+....| ..+-.++...++++||+.++.+ ++.++|.++|+
T Consensus 481 ~~~----~~~~~~~~-----------------------------~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~al~ 524 (565)
T 2nxw_A 481 MLR----TFQPESAF-----------------------------NDLDDWRFADMAAGMGGDGVRV---RTRAELKAALD 524 (565)
T ss_dssp HHH----HHCTTCGG-----------------------------GBCCCCCHHHHTGGGTSEEEEE---CBHHHHHHHHH
T ss_pred EEe----eecccCCC-----------------------------CcCCCCCHHHHHHHcCCCEEEe---CCHHHHHHHHH
Confidence 110 00000000 0111234577899999999854 57899999999
Q ss_pred HHHhcCCCCCE-EEEEEeeccC
Q 004946 350 EVASLGSMGPV-LVHVVTEENR 370 (722)
Q Consensus 350 ~a~~~~~~~P~-lI~v~T~kG~ 370 (722)
++.+ .++|+ +||+.|.+..
T Consensus 525 ~a~~--~~gp~~liev~~~~~~ 544 (565)
T 2nxw_A 525 KAFA--TRGRFQLIEAMIPRGV 544 (565)
T ss_dssp HHHH--CCSSCEEEEEECCTTC
T ss_pred HHHh--cCCCeEEEEEEccccc
Confidence 9987 47898 9999997653
No 53
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=99.24 E-value=1.8e-11 Score=141.35 Aligned_cols=131 Identities=14% Similarity=0.137 Sum_probs=82.9
Q ss_pred CcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhh
Q 004946 194 GCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSS 273 (722)
Q Consensus 194 ~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~ 273 (722)
.|+++|+|+|+|+ ++++|||++|||+++ |.+++|++|.++++|+++||.||+.. |.. .
T Consensus 438 ~~g~l~~AiGaa~------~~~~vv~i~GDGsf~--~~~~eL~ta~~~~l~~~ivv~NN~~~-------------g~~-~ 495 (578)
T 3lq1_A 438 IDGVVSSALGASV------VFQPMFLLIGDLSFY--HDMNGLLMAKKYKMNLTIVIVNNDGG-------------GIF-S 495 (578)
T ss_dssp SSSHHHHHHHHTT------TSSSEEEEEEHHHHH--HTGGGGHHHHHTTCCEEEEEECCC--------------------
T ss_pred cccHHHHHHHHhc------CCCCEEEEEchHHHH--hhHHHHHhhccCCCCeEEEEEECCcC-------------ccc-c
Confidence 3447999999974 378999999999996 88899999999999999999888742 111 0
Q ss_pred hhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHHHHh
Q 004946 274 TLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQEVAS 353 (722)
Q Consensus 274 ~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~ 353 (722)
.+...+....|.+ .......+++..++++||+.+..+ ++.++|.++|+++.+
T Consensus 496 ~~~~~~~~~~~~~-------------------------~~~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~al~~a~~ 547 (578)
T 3lq1_A 496 FLPQANEPKYFES-------------------------LFGTSTELDFRFAAAFYDADYHEA---KSVDELEEAIDKASY 547 (578)
T ss_dssp --------------------------------------------CCCTHHHHHHTTCEEEEC---CSHHHHHHHHHHHTT
T ss_pred ccccccccchhhh-------------------------hccCCCCCCHHHHHHHcCCceEec---CCHHHHHHHHHHHHh
Confidence 0000000000000 000001245688999999999855 689999999999987
Q ss_pred cCCCCCEEEEEEeeccCCCcccc
Q 004946 354 LGSMGPVLVHVVTEENRRAEDTQ 376 (722)
Q Consensus 354 ~~~~~P~lI~v~T~kG~G~~~ae 376 (722)
.++|++|||.|.+.....+..
T Consensus 548 --~~gp~liev~~~~~~~~~~~~ 568 (578)
T 3lq1_A 548 --HKGLDIIEVKTNRHENKANHQ 568 (578)
T ss_dssp --SSSEEEEEEC-----------
T ss_pred --CCCCEEEEEECCccccHHHHH
Confidence 589999999998776654443
No 54
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=99.19 E-value=2e-11 Score=140.36 Aligned_cols=125 Identities=11% Similarity=0.156 Sum_probs=90.1
Q ss_pred cCCCcchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhh
Q 004946 191 AGHGCNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINA 270 (722)
Q Consensus 191 ~G~~G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~ 270 (722)
.|++|. +|+|+|+|+| . +++|||++|||+++ |..++|++|.++++|+++||.||+...+ ++.
T Consensus 416 ~g~~G~-l~~A~Gaa~a-~----~~~vv~i~GDGsf~--~~~~eL~ta~~~~lpv~ivv~NN~~~~~----------~~~ 477 (556)
T 3hww_A 416 SGIDGL-LSTAAGVQRA-S----GKPTLAIVGDLSAL--YDLNALALLRQVSAPLVLIVVNNNGGQI----------FSL 477 (556)
T ss_dssp CCSSSH-HHHHHHHHHH-H----CCCEEEEEEHHHHH--HTGGGHHHHTTCSSCEEEEEEESCC----------------
T ss_pred cccccH-HHHHHHHHhc-C----CCcEEEEEccHHhh--hcchhhHhhcccCCCcEEEEEECCCCCc----------ccC
Confidence 467777 9999999998 3 78999999999995 7889999999999999998888875211 110
Q ss_pred hhhhhhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCCCCHHHHHHHHHH
Q 004946 271 LSSTLSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLISVLQE 350 (722)
Q Consensus 271 l~~~l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~ 350 (722)
+ ...+ .. .+.+....-.+++..++++||+++..+ ++.++|.++|++
T Consensus 478 ~----~~~~---------~~------------------~~~~~~~~~~~d~~~~a~a~G~~~~~v---~~~~~l~~al~~ 523 (556)
T 3hww_A 478 L----PTPQ---------SE------------------RERFYLMPQNVHFEHAAAMFELKYHRP---QNWQELETAFAD 523 (556)
T ss_dssp ------------------------------------------CCCCCCCCSHHHHHHTTCEEECC---SSHHHHHHHHHH
T ss_pred C----CCcc---------hh------------------HHHhccCCCCCCHHHHHHHcCCcEEec---CCHHHHHHHHHH
Confidence 0 0000 00 000000111245688999999999855 688999999999
Q ss_pred HHhcCCCCCEEEEEEeecc
Q 004946 351 VASLGSMGPVLVHVVTEEN 369 (722)
Q Consensus 351 a~~~~~~~P~lI~v~T~kG 369 (722)
+++ .++|++|||.|.+.
T Consensus 524 a~~--~~gp~liev~~~~~ 540 (556)
T 3hww_A 524 AWR--TPTTTVIEMVVNDT 540 (556)
T ss_dssp HTT--SSSEEEEEEECCSS
T ss_pred HHh--CCCCEEEEEECCcc
Confidence 987 58999999999654
No 55
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=98.65 E-value=6.4e-08 Score=119.61 Aligned_cols=114 Identities=17% Similarity=0.186 Sum_probs=81.2
Q ss_pred CCeEEEEecCC-CcccchHHHHHHHhhhcCCCEEEEEECCCCCCCCCccC-CCCcchhhhhhhhhhhhhhhHHHHHHHHH
Q 004946 214 RECIVTVISNG-TTMAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPKIEE-SPKTSINALSSTLSRIQSSKSFRQLREVA 291 (722)
Q Consensus 214 ~~~Vv~viGDG-a~~~G~~~EAln~A~~~~~plivIv~dN~~~s~~t~~~-~~~~~~g~l~~~l~~~~~~~~~~~~r~~~ 291 (722)
+++|||+.||| +++ |.+++|.+|..++.|+++||.||+.. ..|+.| +...+.+..+.+-
T Consensus 953 ~~~Vv~i~GDG~~~~--mg~~eL~ta~~~~~~v~iiVlnN~~y-g~tg~Q~s~~t~~~~~t~~~---------------- 1013 (1231)
T 2c42_A 953 KKSVWIFGGDGWAYD--IGYGGLDHVLASGEDVNVFVMDTEVY-SNTGGQSSKATPTGAVAKFA---------------- 1013 (1231)
T ss_dssp CCEEEEEEEHHHHHT--TTHHHHHHHHHTTCSCEEEEEECSSB-TTTTCBCCTTSCTTCCBBTB----------------
T ss_pred CCcEEEEeCcHHHHH--cchHHHHHHHHhCCCeEEEEEECHHH-HhHHhhhccCCCCCceeeec----------------
Confidence 47899999999 786 77889999999999999999999963 334332 2222222111000
Q ss_pred hhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhcCceEEeecCC-CCHHHHHHHHHHHHhcCCCCCEEEEEEee
Q 004946 292 KGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDG-HNIEDLISVLQEVASLGSMGPVLVHVVTE 367 (722)
Q Consensus 292 ~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~G~~~~~~vdG-hd~~~l~~al~~a~~~~~~~P~lI~v~T~ 367 (722)
..| +....+++..+++++|+.|+..+.- .+.+++.++|+++.+ .+||++|++.+.
T Consensus 1014 -----~~g--------------~~~~~~D~~~iA~a~G~~~va~~~v~~~~~~l~~al~eAl~--~~GP~lI~v~~~ 1069 (1231)
T 2c42_A 1014 -----AAG--------------KRTGKKDLARMVMTYGYVYVATVSMGYSKQQFLKVLKEAES--FPGPSLVIAYAT 1069 (1231)
T ss_dssp -----TTC--------------CSSCCCCHHHHHHTTSSSEEEEECTTTCHHHHHHHHHHHHH--SSSCEEEEEECC
T ss_pred -----ccC--------------CCCCchhHHHHHHHCCCCEEEEEeccCCHHHHHHHHHHHHh--cCCCEEEEEeec
Confidence 000 0011235678999999999876654 599999999999998 589999999985
No 56
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=93.77 E-value=0.12 Score=59.31 Aligned_cols=113 Identities=10% Similarity=-0.002 Sum_probs=80.9
Q ss_pred ceeecccchHHHHHHHHHHhcCCCeeEEE--ecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCc--cCCCCCCcCcHHHH
Q 004946 444 RYFDVGMAEQHAVTFSAGLACGGLKPFCI--IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDI 519 (722)
Q Consensus 444 R~~d~GIaE~~av~~AaGlA~~G~~p~~~--t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~d~ 519 (722)
|++- ...|++|+.+|.|.|....||.++ |+.+.+..++.-+ ..+...++|++++...... .|. ..+|.....
T Consensus 45 ~~i~-~~~E~~Aa~~A~GyAr~tgk~~v~~~tsGpG~~N~~~gl-~~A~~~~vPll~Itg~~p~~~~g~--~~~Q~~d~~ 120 (590)
T 1v5e_A 45 KFLQ-VKHEEVGAMAAVMQSKFGGNLGVTVGSGGPGASHLINGL-YDAAMDNIPVVAILGSRPQRELNM--DAFQELNQN 120 (590)
T ss_dssp EEEE-CSSHHHHHHHHHHHHHTTCCCCEEEECTTHHHHTTHHHH-HHHHHHTCCEEEEEEECCGGGTTT--TCTTCCCCH
T ss_pred eEEe-eCCHHHHHHHHHHHHHHHCCCEEEEeCcChHHHHHHHHH-HHHHhcCCCEEEEcCCCCcccCCC--CcccccCHH
Confidence 4555 499999999999999985554333 4778877777554 5667789998887743332 232 235655556
Q ss_pred HHhcCCCCcEEEeeCCHHHHHHHHHHHhhh----CCCCEEEEecCCC
Q 004946 520 TFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (722)
Q Consensus 520 a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~----~~~Pv~ir~~r~~ 562 (722)
.+++.+-.+ .+.+.+++++..++..|+.. ..+||+| +|...
T Consensus 121 ~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l-iP~dv 165 (590)
T 1v5e_A 121 PMYDHIAVY-NRRVAYAEQLPKLVDEAARMAIAKRGVAVLE-VPGDF 165 (590)
T ss_dssp HHHHTTCSE-EEECCSGGGHHHHHHHHHHHHHHTTSEEEEE-EETTG
T ss_pred HHHHhhccE-EEEeCCHHHHHHHHHHHHHHHhcCCCceEEE-Eccch
Confidence 788888776 67778888888888888763 3379999 99864
No 57
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=93.24 E-value=0.54 Score=53.42 Aligned_cols=149 Identities=13% Similarity=0.103 Sum_probs=96.6
Q ss_pred cchHHHHHHHHHHHHhcCCCEEEEecCCCCccch---HHHHHhCCCceeecccchHHHHHHHHHHhcC-CCeeEE-EecH
Q 004946 401 RTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL---QLFQEKFPERYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIPS 475 (722)
Q Consensus 401 ~s~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~l---~~f~~~~p~R~~d~GIaE~~av~~AaGlA~~-G~~p~~-~t~~ 475 (722)
++..+++.+.|.+..- +.++. .+|+..+ +.|.+. +=|++.+ ..|++|+.+|.|.|.. |...+| .|+.
T Consensus 4 ~~~a~~l~~~L~~~GV--~~vfg----~PG~~~~~l~~al~~~-~i~~i~~-~~E~~Aa~~A~Gyar~tg~p~v~~~TsG 75 (563)
T 2uz1_A 4 ITGGELVVRTLIKAGV--EHLFG----LHGAHIDTIFQACLDH-DVPIIDT-RHEAAAGHAAEGYARAGAKLGVALVTAG 75 (563)
T ss_dssp EEHHHHHHHHHHHHTC--CCEEE----CCCGGGHHHHHHHHHH-TCCEEEC-SSHHHHHHHHHHHHHHHTSCEEEEECTT
T ss_pred cCHHHHHHHHHHHCCC--CEEEE----CCCCchHHHHHHHHhc-CCcEEee-CCHHHHHHHHHHHHHHhCCCEEEEEccC
Confidence 3455666666655432 23443 2333322 344433 4577776 9999999999999997 543333 3588
Q ss_pred hhHHHHHHHHHHHHhcCCCCEEEEEeCCCc--cCCCCCCcCc-HHHHHHhcCCCCcEEEeeCCHHHHHHHHHHHhhh---
Q 004946 476 AFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCG-AFDITFMSCLPNMIVMAPSDEDELVDMVATVASI--- 549 (722)
Q Consensus 476 ~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~-~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~--- 549 (722)
+.+..++.-+ ..+-..++||+++...... .|. ..||. .....+++.+-.+ .+...+++++...+..|+..
T Consensus 76 pG~~N~~~~l-~~A~~~~~Pll~itg~~~~~~~~~--~~~Q~~~d~~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~a~~ 151 (563)
T 2uz1_A 76 GGFTNAVTPI-ANAWLDRTPVLFLTGSGALRDDET--NTLQAGIDQVAMAAPITKW-AHRVMATEHIPRLVMQAIRAALS 151 (563)
T ss_dssp HHHHTTHHHH-HHHHHHTCCEEEEEEECCGGGTTS--CCTTCCCCHHHHHGGGCSE-EEECCCGGGHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHH-HHHHhcCCCEEEEeCCCCcccCCc--hhhhhhccHHHHhhhhhce-EEEcCCHHHHHHHHHHHHHHhcC
Confidence 8877777554 5667789998887743332 232 23676 6666788887766 45567777888888777753
Q ss_pred -CCCCEEEEecCC
Q 004946 550 -DDRPVCFRYPRG 561 (722)
Q Consensus 550 -~~~Pv~ir~~r~ 561 (722)
..+||+|-+|..
T Consensus 152 ~~~GPV~l~iP~d 164 (563)
T 2uz1_A 152 APRGPVLLDLPWD 164 (563)
T ss_dssp SSCCCEEEEEEHH
T ss_pred CCCceEEEEeCHH
Confidence 348999988876
No 58
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=93.17 E-value=0.43 Score=54.59 Aligned_cols=114 Identities=13% Similarity=0.132 Sum_probs=81.7
Q ss_pred ceeecccchHHHHHHHHHHhcC-CCeeEE-EecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCc--cCCCCCCcCcHHHH
Q 004946 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDI 519 (722)
Q Consensus 444 R~~d~GIaE~~av~~AaGlA~~-G~~p~~-~t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~d~ 519 (722)
|++.+ ..|++|+.+|.|.|.. |...+| .|+.+....++--+ ..+...++||+++...... .|. | .+|.....
T Consensus 52 ~~i~~-~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~~~gv-~~A~~~~vPll~itg~~~~~~~g~-~-~~Q~~d~~ 127 (590)
T 1ybh_A 52 RNVLP-RHEQGGVFAAEGYARSSGKPGICIATSGPGATNLVSGL-ADALLDSVPLVAITGQVPRRMIGT-D-AFQETPIV 127 (590)
T ss_dssp EECCC-SSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHTTHHHH-HHHHHHTCCEEEEEEECCGGGTTT-T-CTTCCCHH
T ss_pred cEEee-CCHHHHHHHHHHHHHHHCCCEEEEeccCchHHHHHHHH-HHHHhhCCCEEEEeCcCCccccCC-C-cccccCHH
Confidence 66665 8999999999999997 544333 35888877766544 5677789998887643322 232 2 35666666
Q ss_pred HHhcCCCCcEEEeeCCHHHHHHHHHHHhhh----CCCCEEEEecCCC
Q 004946 520 TFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (722)
Q Consensus 520 a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~----~~~Pv~ir~~r~~ 562 (722)
.+++.+-.+ .+...+++++..++..|+.. ..+||+|-+|...
T Consensus 128 ~~~~~~~k~-~~~v~~~~~i~~~l~~A~~~a~~~~~GPV~l~iP~dv 173 (590)
T 1ybh_A 128 EVTRSITKH-NYLVMDVEDIPRIIEEAFFLATSGRPGPVLVDVPKDI 173 (590)
T ss_dssp HHHGGGSSE-EEECCCGGGHHHHHHHHHHHHHSSSCCEEEEEEEHHH
T ss_pred HHHHHHhCe-EEecCCHHHHHHHHHHHHHHHhhCCCceEEEEeCcch
Confidence 788888777 46667888999999988864 2579999888653
No 59
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=92.64 E-value=0.34 Score=55.18 Aligned_cols=116 Identities=12% Similarity=0.045 Sum_probs=82.3
Q ss_pred CceeecccchHHHHHHHHHHhcCCCeeEE--EecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCc--cCCCCCCcCcHHH
Q 004946 443 ERYFDVGMAEQHAVTFSAGLACGGLKPFC--IIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFD 518 (722)
Q Consensus 443 ~R~~d~GIaE~~av~~AaGlA~~G~~p~~--~t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~d 518 (722)
=|++.+ ..|++|..+|.|.|....||.+ .|+.+....++.-+ ..+...++||+++...... .|. +..||....
T Consensus 49 i~~i~~-~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~~~~v-~~A~~~~~Pll~itg~~~~~~~~~-~~~~Q~~d~ 125 (573)
T 2iht_A 49 IDFVLT-RHEFTAGVAADVLARITGRPQACWATLGPGMTNLSTGI-ATSVLDRSPVIALAAQSESHDIFP-NDTHQCLDS 125 (573)
T ss_dssp CEEEEC-SSHHHHHHHHHHHHHHHCSCEEEEECTTHHHHHHHHHH-HHHHHHTCCEEEEEEESCGGGCCT-TTSTTCCCH
T ss_pred CeEEee-CCHHHHHHHHHHHHHHHCCCEEEEEccCchHHHHHHHH-HHHHhhCCCEEEEcccCcccccCC-cCccccCCH
Confidence 466665 8999999999999997444433 45888887777554 6777889998887643332 232 135777777
Q ss_pred HHHhcCCCCcEEEeeCCHHHHHHHHHHHhhh----CCCCEEEEecCCC
Q 004946 519 ITFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (722)
Q Consensus 519 ~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~----~~~Pv~ir~~r~~ 562 (722)
..+++.+..+. +...+++++...+..|+.. ..+||+|-+|...
T Consensus 126 ~~~~~~~~k~~-~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv 172 (573)
T 2iht_A 126 VAIVAPMSKYA-VELQRPHEITDLVDSAVNAAMTEPVGPSFISLPVDL 172 (573)
T ss_dssp HHHHGGGSSEE-EECCSGGGHHHHHHHHHHHHTBSSCCCEEEEEEHHH
T ss_pred HHHHHhHhhEE-EEcCCHHHHHHHHHHHHHHHhcCCCceEEEEecchH
Confidence 78888887764 5556777787777777753 3479999888653
No 60
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=92.58 E-value=0.94 Score=52.02 Aligned_cols=121 Identities=7% Similarity=-0.002 Sum_probs=82.7
Q ss_pred HHHHHhCCC-ceeecccchHHHHHHHHHHhcC-CCeeEE--EecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCc--cCC
Q 004946 435 QLFQEKFPE-RYFDVGMAEQHAVTFSAGLACG-GLKPFC--IIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGS 508 (722)
Q Consensus 435 ~~f~~~~p~-R~~d~GIaE~~av~~AaGlA~~-G~~p~~--~t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~ 508 (722)
+.|.+ .++ |++.+ ..|++|+.+|.|.|.. |.+|.+ .|+.+....++.-+ ..+.+.+.|++++...... .+.
T Consensus 58 ~al~~-~~~i~~i~~-~~E~~Aa~~A~GyAr~tgg~~~v~~~TsGpG~~N~~~~l-~~A~~~~vPlvvItg~~p~~~~~~ 134 (616)
T 2pan_A 58 SAMRK-HGGIRHILA-RHVEGASHMAEGYTRATAGNIGVCLGTSGPAGTDMITAL-YSASADSIPILCITGQAPRARLHK 134 (616)
T ss_dssp HHHHH-HCCCEEEEC-SSHHHHHHHHHHHHHHSTTCCEEEEECSTHHHHTSHHHH-HHHHHTTCCEEEEEEECCGGGTTT
T ss_pred HHHHh-cCCCcEEee-CCHHHHHHHHHHHHHhcCCCceEEEeCCCchHHHHHHHH-HHHHhcCCCEEEEecCCcccccCc
Confidence 34443 343 55554 9999999999999997 455443 46888877777655 5777889998887633222 232
Q ss_pred CCCCcCcHHHHHHhcCCCCcEEEeeCCHHHHHHHHHHHhhh----CCCCEEEEecCC
Q 004946 509 DGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRG 561 (722)
Q Consensus 509 dG~TH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~----~~~Pv~ir~~r~ 561 (722)
| .+|......+++.+-.+. +...++.++..+++.|+.. ..+||+|-+|..
T Consensus 135 -~-~~Q~~d~~~~~~~~tk~~-~~v~~~~~i~~~l~~A~~~A~~~r~GPV~l~iP~d 188 (616)
T 2pan_A 135 -E-DFQAVDIEAIAKPVSKMA-VTVREAALVPRVLQQAFHLMRSGRPGPVLVDLPFD 188 (616)
T ss_dssp -T-CTTCCCHHHHHGGGSSEE-EECCSGGGHHHHHHHHHHHHHSSSCCCEEEEEEHH
T ss_pred -c-cccccCHHHHHHHHHHhh-cccCCHHHHHHHHHHHHHHHhcCCCceEEEEcchh
Confidence 2 345544557788777664 4556788888888888863 257999988764
No 61
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=92.36 E-value=1.5 Score=49.75 Aligned_cols=115 Identities=13% Similarity=0.137 Sum_probs=77.1
Q ss_pred ceeecccchHHHHHHHHHHhcC-CCeeE-EEecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCc--cCCCCCCcCc----
Q 004946 444 RYFDVGMAEQHAVTFSAGLACG-GLKPF-CIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCG---- 515 (722)
Q Consensus 444 R~~d~GIaE~~av~~AaGlA~~-G~~p~-~~t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~---- 515 (722)
|++.+ ..|++|+.+|.|.|.. | ..+ +.|+.+....++.-+ ..+...++||+++...... .+.+...||.
T Consensus 43 ~~i~~-~~E~~Aa~~A~Gyar~tg-~~v~~~TsGpG~~N~~~gi-a~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~ 119 (568)
T 2wvg_A 43 EQVYC-CNELNCGFSAEGYARAKG-AAAAVVTYSVGALSAFDAI-GGAYAENLPVILISGAPNNNDHAAGHVLHHALGKT 119 (568)
T ss_dssp EEEEC-SSHHHHHHHHHHHHHHHS-CEEEEECTTTTHHHHHHHH-HHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSS
T ss_pred eEecc-CcHHHHHHHHHHHHHhhC-CeEEEEeCCCCHHHHHHHH-HHHhhhCCCEEEEeCCCChhHhccCcceeeecccc
Confidence 67766 9999999999999975 7 433 345888877777555 5677889998887743332 2332223441
Q ss_pred --HHHHHHhcCCCCcEEEeeCCHHHHHHHHHHHhhh---CCCCEEEEecCCC
Q 004946 516 --AFDITFMSCLPNMIVMAPSDEDELVDMVATVASI---DDRPVCFRYPRGA 562 (722)
Q Consensus 516 --~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~---~~~Pv~ir~~r~~ 562 (722)
.....+++.+-.+ .+...+++++...+..|+.. ..+||+|-+|...
T Consensus 120 ~~~d~~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~A~~~~GPV~l~iP~dv 170 (568)
T 2wvg_A 120 DYHYQLEMAKNITAA-AEAIYTPEEAPAKIDHVIKTALREKKPVYLEIACNI 170 (568)
T ss_dssp CCCHHHHHHTTSCSC-EEEECSGGGHHHHHHHHHHHHHHHTCCEEEEEEGGG
T ss_pred chHHHHHHHHhhEeE-EEEeCCHHHHHHHHHHHHHHHHhCCCCEEEEechhH
Confidence 1345788887776 45556666666666665542 3489999988764
No 62
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=92.03 E-value=1.3 Score=49.94 Aligned_cols=113 Identities=12% Similarity=0.052 Sum_probs=77.8
Q ss_pred ceeecccchHHHHHHHHHHhcC-CCeeEE-EecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCc--cCCCCCCcCcHHHH
Q 004946 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDI 519 (722)
Q Consensus 444 R~~d~GIaE~~av~~AaGlA~~-G~~p~~-~t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~d~ 519 (722)
|++.+ ..|++|+.+|-|.|.. |...+| .|+.+....++.-| ..+...++||+++...... .|. ..+|.....
T Consensus 43 ~~i~~-~~E~~Aa~~A~GyAr~tg~~~v~~~TsGpG~~N~~~gi-~~A~~~~vPvl~itg~~~~~~~~~--~~~Q~~d~~ 118 (549)
T 3eya_A 43 EWMST-RHEEVAAFAAGAEAQLSGELAVCAGSCGPGNLHLINGL-FDCHRNHVPVLAIAAHIPSSEIGS--GYFQETHPQ 118 (549)
T ss_dssp EEEEC-SSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHTTHHHH-HHHHHTTCCEEEEEEESCGGGTTS--CCTTCCCHH
T ss_pred eEEEe-CChHHHHHHHHHHHHHhCCCEEEEeCCCCcHhhhHHHH-HHHHhhCCCEEEEeCCCchhhcCC--CCCCccCHH
Confidence 66665 8999999999999986 543333 46888877777544 6777889998887633222 232 235555566
Q ss_pred HHhcCCCCcEEEeeCCHHHHHHHHHHHhhh---CCCCEEEEecCC
Q 004946 520 TFMSCLPNMIVMAPSDEDELVDMVATVASI---DDRPVCFRYPRG 561 (722)
Q Consensus 520 a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~---~~~Pv~ir~~r~ 561 (722)
.+++.+-.+. +...+++++...+..|+.. ..+||+|-+|..
T Consensus 119 ~~~~~~tk~~-~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~d 162 (549)
T 3eya_A 119 ELFRECSHYC-ELVSSPEQIPQVLAIAMRKAVLNRGVSVVVLPGD 162 (549)
T ss_dssp HHTSTTCSEE-EECCSGGGHHHHHHHHHHHHHHTTSEEEEEEEHH
T ss_pred HHHhhhhheE-EEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeChh
Confidence 7888877664 4455677777766666642 468999988864
No 63
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=91.71 E-value=0.61 Score=53.04 Aligned_cols=113 Identities=12% Similarity=0.104 Sum_probs=76.8
Q ss_pred ceeecccchHHHHHHHHHHhcC-CCeeEE-EecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCc--cCCCCCCcCcHHHH
Q 004946 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDI 519 (722)
Q Consensus 444 R~~d~GIaE~~av~~AaGlA~~-G~~p~~-~t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~d~ 519 (722)
|++.+ ..|++|+.+|.|.|.. |...+| .|+.+.+..++.-+ ..+...++||+++...... .|. ..||.....
T Consensus 50 ~~v~~-~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~~~~l-~~A~~~~vPll~itg~~~~~~~~~--~~~Q~~d~~ 125 (566)
T 1ozh_A 50 RIIPV-RHEANAAFMAAAVGRITGKAGVALVTSGPGCSNLITGM-ATANSEGDPVVALGGAVKRADKAK--QVHQSMDTV 125 (566)
T ss_dssp EEEEC-SSHHHHHHHHHHHHHHHSSCEEEEECSTHHHHTTHHHH-HHHHHHTCCEEEEEEECCTTTC--------CCCHH
T ss_pred cEEEe-CCHHHHHHHHHHHHHHHCCCEEEEEccChHHHHHHHHH-HHHHhcCCCEEEEeCCCccccCCC--CcccccCHH
Confidence 66666 9999999999999997 543333 45888877766544 5667789998887643332 232 246766667
Q ss_pred HHhcCCCCcEEEeeCCHHHHHHHHHHHhhh----CCCCEEEEecCC
Q 004946 520 TFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRG 561 (722)
Q Consensus 520 a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~----~~~Pv~ir~~r~ 561 (722)
.+++.+..+ .+...+++++...+..|+.. ..+||+|-+|..
T Consensus 126 ~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~r~GPV~l~iP~d 170 (566)
T 1ozh_A 126 AMFSPVTKY-AIEVTAPDALAEVVSNAFRAAEQGRPGSAFVSLPQD 170 (566)
T ss_dssp HHHGGGCSE-EEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred HHHHHHhhe-EEEcCCHHHHHHHHHHHHHHHhcCCCCeEEEEeChh
Confidence 888888766 45556777787777777652 358999988875
No 64
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=91.66 E-value=1.9 Score=48.84 Aligned_cols=115 Identities=11% Similarity=0.118 Sum_probs=74.9
Q ss_pred ceeecccchHHHHHHHHHHhcC-CCeeEEE-ecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCc--cCCCCCCcCc----
Q 004946 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCG---- 515 (722)
Q Consensus 444 R~~d~GIaE~~av~~AaGlA~~-G~~p~~~-t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~---- 515 (722)
|++.+ ..|++++.+|.|.|.. | ..+|. |+.+....++.-+ ..+...++||+++...... .+.+-..||.
T Consensus 43 ~~v~~-~~E~~Aa~~A~Gyar~tg-~~v~~~TsGpG~~N~~~gi-a~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~ 119 (566)
T 2vbi_A 43 KQIYC-CNELNCGFSAEGYARSNG-AAAAVVTFSVGAISAMNAL-GGAYAENLPVILISGAPNSNDQGTGHILHHTIGKT 119 (566)
T ss_dssp EEEEC-SSHHHHHHHHHHHHHHHS-CEEEEECTTTTHHHHHHHH-HHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSS
T ss_pred eEEee-CcHHHHHHHHHHHHhhcC-CeEEEEeCCCCHHHHHHHH-HHHHhhCCCEEEEECCCChHHhccCceeeeeccCc
Confidence 66665 9999999999999986 7 54443 5888877777555 4677889998887743332 2322223431
Q ss_pred --HHHHHHhcCCCCcEEEeeCCHHHHHHHHHHHhhh---CCCCEEEEecCCC
Q 004946 516 --AFDITFMSCLPNMIVMAPSDEDELVDMVATVASI---DDRPVCFRYPRGA 562 (722)
Q Consensus 516 --~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~---~~~Pv~ir~~r~~ 562 (722)
.....+++.+-.+. +.+.+++++...+..|+.. ..+||+|-+|...
T Consensus 120 ~~~d~~~~~~~~tk~~-~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d~ 170 (566)
T 2vbi_A 120 DYSYQLEMARQVTCAA-ESITDAHSAPAKIDHVIRTALRERKPAYLDIACNI 170 (566)
T ss_dssp CCTHHHHHHHTTCSEE-EEECSSSSHHHHHHHHHHHHHHHTCCEEEEEETTT
T ss_pred chHHHHHHHhhhEeEE-EEeCCHHHHHHHHHHHHHHHHhCCCCEEEEechhh
Confidence 13357888776653 4444555555555555431 3489999998764
No 65
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=91.19 E-value=0.97 Score=51.81 Aligned_cols=151 Identities=13% Similarity=0.055 Sum_probs=88.8
Q ss_pred cchHHHHHHHHHHHHhcCCCEEEEecCCCCccch---HHHHHhCC-CceeecccchHHHHHHHHHHhcC-CCeeEE-Eec
Q 004946 401 RTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL---QLFQEKFP-ERYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIP 474 (722)
Q Consensus 401 ~s~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~l---~~f~~~~p-~R~~d~GIaE~~av~~AaGlA~~-G~~p~~-~t~ 474 (722)
++..+++.+.|.+. .-+-+.. ++|+.-+ +.|.+..+ =|++-+ ..|+++..+|.|.|.. |...+| .|+
T Consensus 11 ~~~a~~l~~~L~~~---GV~~vfg---~PG~~~~~l~dal~~~~~~i~~i~~-~hE~~Aa~aA~GyAr~tg~~gv~~~Ts 83 (603)
T 4feg_A 11 ILAGAAVIKVLEAW---GVDHLYG---IPGGSINSIMDALSAERDRIHYIQV-RHEEVGAMAAAADAKLTGKIGVCFGSA 83 (603)
T ss_dssp EEHHHHHHHHHHHT---TCCEEEE---CCCGGGHHHHHHHHHTTTTSEEEEC-SSHHHHHHHHHHHHHHHSSCEEEEECT
T ss_pred eeHHHHHHHHHHHC---CCCEEEE---eCCCchHHHHHHHHhccCCCeEEEe-cChHHHHHHHHHHHHHhCCceEEEecC
Confidence 44555555555432 2233332 2333332 34443223 377766 8999999999999986 543333 458
Q ss_pred HhhHHHHHHHHHHHHhcCCCCEEEEEeCCCc--cCCCCCCcCcHHHHHHhcCCCCcEEEeeCCHHHHHHHHHHHhhh---
Q 004946 475 SAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDITFMSCLPNMIVMAPSDEDELVDMVATVASI--- 549 (722)
Q Consensus 475 ~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~--- 549 (722)
.+....++.-| ..+...++||+++...... .|.+ .+|......+++.+-.+.. ...+++++...+..|+..
T Consensus 84 GpG~~N~~~gi-a~A~~~~vPvl~itG~~~~~~~~~~--~~Q~~d~~~~~~~~tk~~~-~v~~~~~~~~~i~~A~~~A~~ 159 (603)
T 4feg_A 84 GPGGTHLMNGL-YDAREDHVPVLALIGQFGTTGMNMD--TFQEMNENPIYADVADYNV-TAVNAATLPHVIDEAIRRAYA 159 (603)
T ss_dssp THHHHTTHHHH-HHHHHTTCCEEEEEEECCTTTTTSC--CTTCCCCGGGGTTTCSEEE-ECCCSTTHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHH-HHHHHcCCCEEEEecCCcccccCCC--ccccccHHHHhhhhceEEE-EcCCHHHHHHHHHHHHHHHhc
Confidence 88887777544 6777889998887632221 2322 3454444567777665543 334445555555544431
Q ss_pred CCCCEEEEecCCC
Q 004946 550 DDRPVCFRYPRGA 562 (722)
Q Consensus 550 ~~~Pv~ir~~r~~ 562 (722)
..+||+|-+|...
T Consensus 160 ~~GPV~l~iP~dv 172 (603)
T 4feg_A 160 HQGVAVVQIPVDL 172 (603)
T ss_dssp HTSEEEEEEETTG
T ss_pred CCCCEEEEeChhh
Confidence 4689999998764
No 66
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=90.92 E-value=1 Score=52.46 Aligned_cols=113 Identities=14% Similarity=0.108 Sum_probs=80.0
Q ss_pred ceeecccchHHHHHHHHHHhcC-CCeeE-EEecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCc--cCCCCCCcCcHHHH
Q 004946 444 RYFDVGMAEQHAVTFSAGLACG-GLKPF-CIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDI 519 (722)
Q Consensus 444 R~~d~GIaE~~av~~AaGlA~~-G~~p~-~~t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~d~ 519 (722)
|++-+ ..|++|+.+|.|.|.. |...+ +.|+.+....++--| ..+...++||+++...... .|. ..+|.....
T Consensus 122 ~~v~~-~hE~~Aa~aAdGyAr~tGkpgvv~~TsGpG~~N~~~gi-a~A~~d~vPllvItG~~~~~~~g~--~a~Q~~Dq~ 197 (677)
T 1t9b_A 122 NFVLP-KHEQGAGHMAEGYARASGKPGVVLVTSGPGATNVVTPM-ADAFADGIPMVVFTGQVPTSAIGT--DAFQEADVV 197 (677)
T ss_dssp EEECC-SSHHHHHHHHHHHHHHHSSCEEEEECSTHHHHTTHHHH-HHHHHHTCCEEEEEEECCTTTTTS--CCTTCCCHH
T ss_pred eEEEe-CChHHHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHH-HHHHHcCCCEEEEeCCCChhhcCC--CCccccCHH
Confidence 66655 9999999999999997 54333 345888877777544 5667789998887643222 232 245666666
Q ss_pred HHhcCCCCcEEEeeCCHHHHHHHHHHHhhh----CCCCEEEEecCC
Q 004946 520 TFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRG 561 (722)
Q Consensus 520 a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~----~~~Pv~ir~~r~ 561 (722)
.+++.+-.+. +...+++++...+..|+.. ..+||+|-+|..
T Consensus 198 ~i~~~~tk~~-~~v~~~~~i~~~i~~A~~~A~~grpGPV~l~lP~D 242 (677)
T 1t9b_A 198 GISRSCTKWN-VMVKSVEELPLRINEAFEIATSGRPGPVLVDLPKD 242 (677)
T ss_dssp HHTGGGSSEE-EECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred HHhhhheeEE-EEcCCHHHHHHHHHHHHHHHhhCCCceEEEEcCHH
Confidence 7888777664 4456788888888888863 357999988854
No 67
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=90.43 E-value=0.82 Score=52.23 Aligned_cols=114 Identities=8% Similarity=0.003 Sum_probs=78.9
Q ss_pred ceeecccchHHHHHHHHHHhcCCCe--eEEEecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCc--cCCCCCCcCcHHHH
Q 004946 444 RYFDVGMAEQHAVTFSAGLACGGLK--PFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDI 519 (722)
Q Consensus 444 R~~d~GIaE~~av~~AaGlA~~G~~--p~~~t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~d~ 519 (722)
|++.+ ..|++|+.+|.|.|...-| .++.|+.+....++--+ ..+...++||+++...... .|. |..||.....
T Consensus 45 ~~v~~-~hE~~Aa~~A~GyAr~tg~p~v~~~TsGpG~~N~~~gv-~~A~~~~vPll~itg~~~~~~~~~-~~~~Q~~d~~ 121 (589)
T 2pgn_A 45 RVINP-ATELGGAWMVNGYNYVKDRSAAVGAWHCVGNLLLHAAM-QEARTGRIPAVHIGLNSDGRLAGR-SEAAQQVPWQ 121 (589)
T ss_dssp TCBCC-SSHHHHHHHHHHHHHHHTSCCEEEEEEGGGGGGCHHHH-HHHHHTTCCEEEEEEESCGGGTTC-TTCSSCCCGG
T ss_pred eEEEe-CcHHHHHHHHHHHHHHHCCCEEEEEecCchHHHHHHHH-HHHHhcCCCEEEEecCCcccccCC-CCcccccChh
Confidence 66666 9999999999999997434 33446888877666544 6777889998887643332 232 2157766656
Q ss_pred HHhcCCCCcEEEeeCCHHHHHHHHHHHhhh----CCCCEEEEecCCC
Q 004946 520 TFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRGA 562 (722)
Q Consensus 520 a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~----~~~Pv~ir~~r~~ 562 (722)
. ++.+..+. +...+++++...+..|+.. ..+||+|-+|...
T Consensus 122 ~-~~~~tk~~-~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv 166 (589)
T 2pgn_A 122 S-FTPIARST-QRVERLDKVGEAIHEAFRVAEGHPAGPAYVDIPFDL 166 (589)
T ss_dssp G-GTTTSSEE-EECCSGGGHHHHHHHHHHHHTSSSCCEEEEEEETHH
T ss_pred h-ccccEEEE-eecCCHHHHHHHHHHHHHHHhcCCCccEEEEeCHhh
Confidence 6 77776663 5556777777777777652 3479999988763
No 68
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=90.11 E-value=1.3 Score=50.27 Aligned_cols=149 Identities=13% Similarity=0.084 Sum_probs=88.2
Q ss_pred cchHHHHHHHHHHHHhcCCCEEEEecCCCCccch---HHHHHhCCC-ceeecccchHHHHHHHHHHhcC-CCeeEE-Eec
Q 004946 401 RTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL---QLFQEKFPE-RYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIP 474 (722)
Q Consensus 401 ~s~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~l---~~f~~~~p~-R~~d~GIaE~~av~~AaGlA~~-G~~p~~-~t~ 474 (722)
.+..+++.+.|.+. .-+.+.. .+|+..+ +.|.+ .++ |++-+ ..|++|+.+|.|.|.. | ..+| .|+
T Consensus 25 ~~~a~~l~~~L~~~---GV~~vfg---~PG~~~~~l~~al~~-~~~i~~i~~-~~E~~A~~~A~GyAr~tG-~~v~~~ts 95 (570)
T 2vbf_A 25 YTVGDYLLDRLHEL---GIEEIFG---VPGDYNLQFLDQIIS-REDMKWIGN-ANELNASYMADGYARTKK-AAAFLTTF 95 (570)
T ss_dssp CBHHHHHHHHHHHT---TCCEEEE---CCCGGGHHHHHHHHH-CSSCEEEEC-SSHHHHHHHHHHHHHHHS-CEEEEEET
T ss_pred CCHHHHHHHHHHHc---CCCEEEE---CCCcchHHHHHHHhc-CCCCeEECc-CcHHHHHHHHHHHHHHhC-CeEEEEcC
Confidence 34555555555432 2233333 2333332 33433 343 55554 9999999999999954 8 4444 358
Q ss_pred HhhHHHHHHHHHHHHhcCCCCEEEEEeCCCc--cCCCCCCcCcH------HHHHHhcCCCCcEEEeeCCHHHHHHHHHHH
Q 004946 475 SAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGA------FDITFMSCLPNMIVMAPSDEDELVDMVATV 546 (722)
Q Consensus 475 ~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~------~d~a~~~~iP~l~V~~Psd~~E~~~~l~~a 546 (722)
.+....++.-+ ..+...++|++++...... .+.+...||.. +...+++.+..+....+ + +++...+..|
T Consensus 96 GpG~~N~~~gi-~~A~~~~vPlv~itg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~-~-~~~~~~l~~A 172 (570)
T 2vbf_A 96 GVGELSAINGL-AGSYAENLPVVEIVGSPTSKVQNDGKFVHHTLADGDFKHFMKMHEPVTAARTLLT-A-ENATYEIDRV 172 (570)
T ss_dssp THHHHHHHHHH-HHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCCHHHHHTGGGCSEEEECC-T-TTHHHHHHHH
T ss_pred CCCHHHHHHHH-HHHhhhCCCEEEEeCCCCHHHhhccccceeeccccchHHHHHHhhhhEEEEEEEC-c-ccHHHHHHHH
Confidence 88877777655 5777889998887643322 22223344411 13467787776654444 4 6666666655
Q ss_pred hhh---CCCCEEEEecCC
Q 004946 547 ASI---DDRPVCFRYPRG 561 (722)
Q Consensus 547 ~~~---~~~Pv~ir~~r~ 561 (722)
+.. ..+||+|-+|..
T Consensus 173 ~~~A~~~~GPV~l~iP~d 190 (570)
T 2vbf_A 173 LSQLLKERKPVYINLPVD 190 (570)
T ss_dssp HHHHHHHCCCEEEEEEHH
T ss_pred HHHHhhCCCCEEEEcchh
Confidence 542 348999988865
No 69
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=89.75 E-value=1.9 Score=48.92 Aligned_cols=154 Identities=13% Similarity=0.064 Sum_probs=88.6
Q ss_pred ccchHHHHHHHHHHHHhcCCCEEEEecCCCCccch---HHHHHhCCCceeecccchHHHHHHHHHHhcC-CCeeE-EEec
Q 004946 400 SRTYDDCFIEALVMEAEKDKDIVVVHAGMEMDLSL---QLFQEKFPERYFDVGMAEQHAVTFSAGLACG-GLKPF-CIIP 474 (722)
Q Consensus 400 ~~s~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~l---~~f~~~~p~R~~d~GIaE~~av~~AaGlA~~-G~~p~-~~t~ 474 (722)
.++..+++.+.|.+..- +.++.+ +|+.-+ +.|.+ .+.+.+=....|++|+.+|.|.|.. |...+ +.|+
T Consensus 20 ~~~~a~~lv~~L~~~GV--~~vfg~----PG~~~~~l~~al~~-~~~~~~i~~~~E~~Aa~~A~GyAr~tgkp~v~~~Ts 92 (565)
T 2nxw_A 20 HMKLAEALLRALKDRGA--QAMFGI----PGDFALPFFKVAEE-TQILPLHTLSHEPAVGFAADAAARYSSTLGVAAVTY 92 (565)
T ss_dssp CCBHHHHHHHHHHHTTC--CCEEEC----CCGGGHHHHHHHHH-HCSSCEEECSSHHHHHHHHHHHHHHHTSCEEEEECT
T ss_pred CcCHHHHHHHHHHHcCC--CEEEEC----CCcchHHHHHHHHh-CCCcEEEecCcHHHHHHHHHHHHHHhCCCeEEEECC
Confidence 35666777666654322 233332 333322 34443 2444444559999999999999997 53333 3358
Q ss_pred HhhHHHHHHHHHHHHhcCCCCEEEEEeCCCc--cCCCCCCcCc---HH-HHHHhcCCCCcEEEeeCCHHHHHHHHHHHhh
Q 004946 475 SAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCG---AF-DITFMSCLPNMIVMAPSDEDELVDMVATVAS 548 (722)
Q Consensus 475 ~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~---~~-d~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~ 548 (722)
.+....++.-+ ..+...++||+++...... .|.+...|++ .. ...+++.+-.+.. ...+++++...+..|+.
T Consensus 93 GpG~~N~~~gv-~~A~~~~vPll~itg~~~~~~~~~~~~~~~~~q~~d~q~~~~~~~~k~~~-~v~~~~~~~~~i~~A~~ 170 (565)
T 2nxw_A 93 GAGAFNMVNAV-AGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDTQFQVFKEITVAQA-RLDDPAKAPAEIARVLG 170 (565)
T ss_dssp THHHHTTHHHH-HHHHHTTCCEEEEEEECCTTCC--CCCC-------CHHHHHHTTSCSCEE-ECCCTTTHHHHHHHHHH
T ss_pred CCCHHHHHHHH-HHHHhhCCCEEEEeCCCChhhhccCcceeeeccchhhHHHHHHhhheEEE-EeCCHHHHHHHHHHHHH
Confidence 88877766544 5677889998887743322 3433333332 22 3578887766643 34455555555555543
Q ss_pred h---CCCCEEEEecCCC
Q 004946 549 I---DDRPVCFRYPRGA 562 (722)
Q Consensus 549 ~---~~~Pv~ir~~r~~ 562 (722)
. ..+||+|-+|...
T Consensus 171 ~A~~~~GPV~l~iP~Dv 187 (565)
T 2nxw_A 171 AARAQSRPVYLEIPRNM 187 (565)
T ss_dssp HHHHHTCCEEEEEEGGG
T ss_pred HHHhCCCCEEEECChhh
Confidence 1 3689999998653
No 70
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=88.77 E-value=0.63 Score=52.39 Aligned_cols=115 Identities=15% Similarity=0.165 Sum_probs=76.9
Q ss_pred ceeecccchHHHHHHHHHHhcC-CCeeEE-EecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCc--cCCCCCCcCcHHHH
Q 004946 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDI 519 (722)
Q Consensus 444 R~~d~GIaE~~av~~AaGlA~~-G~~p~~-~t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~d~ 519 (722)
|++.+ ..|++|+.+|.|.|.. |...+| .|+.+.+..++.-+ ..+...++||+++...... .|.+..+|. ....
T Consensus 40 ~~i~~-~~E~~Aa~~A~Gyar~tg~~~v~~~tsGpG~~N~~~~l-~~A~~~~~Pll~itg~~~~~~~~~~~~q~~-~d~~ 116 (528)
T 1q6z_A 40 RYILA-LQEACVVGIADGYAQASRKPAFINLHSAAGTGNAMGAL-SNAWNSHSPLIVTAGQQTRAMIGVEALLTN-VDAA 116 (528)
T ss_dssp EEEEC-SSHHHHHHHHHHHHHHHTSCEEEEEEHHHHHHHTHHHH-HHHHHTTCCEEEEEEECCHHHHTTTCTTCC-TTGG
T ss_pred cEEEE-CcHHHHHHHHHHHHHHhCCCEEEEEcCChHHHHHHHHH-HHHhhcCCCEEEEeCCCcccccCCCccccc-ccHH
Confidence 66655 8999999999999997 655454 34778887777655 5677889998887643322 344333331 2344
Q ss_pred HHhcCCCCcEEEeeCCHHHHHHHHHHHhh----hCCCCEEEEecCCC
Q 004946 520 TFMSCLPNMIVMAPSDEDELVDMVATVAS----IDDRPVCFRYPRGA 562 (722)
Q Consensus 520 a~~~~iP~l~V~~Psd~~E~~~~l~~a~~----~~~~Pv~ir~~r~~ 562 (722)
.+++.+..+ .+.+.+++++...+..|+. ...+||+|-+|...
T Consensus 117 ~~~~~~~k~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d~ 162 (528)
T 1q6z_A 117 NLPRPLVKW-SYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDD 162 (528)
T ss_dssp GSSTTSCSC-EECCSSGGGHHHHHHHHHHHHHSSSCCCEEEEEEGGG
T ss_pred HHHHHhhHh-hhcCCCHHHHHHHHHHHHHHHhcCCCCcEEEEechhh
Confidence 667777666 3555666666666666664 23469999988764
No 71
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=88.42 E-value=2.4 Score=48.01 Aligned_cols=147 Identities=9% Similarity=0.053 Sum_probs=92.2
Q ss_pred HHHHHHHHHhcC-CCEEEEecCCCCccch---HHHHHhCCC-ceeecccchHHHHHHHHHHhcC-CCeeEE-EecHhhHH
Q 004946 407 FIEALVMEAEKD-KDIVVVHAGMEMDLSL---QLFQEKFPE-RYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIPSAFLQ 479 (722)
Q Consensus 407 ~~~~L~~~~~~d-~~iv~i~ad~~~~~~l---~~f~~~~p~-R~~d~GIaE~~av~~AaGlA~~-G~~p~~-~t~~~Fl~ 479 (722)
.++.|.+.+++. -+-+.. .+|+..+ +.+.+ .++ |++- ...|++|.-+|-|.|.. |...+| .|+.+...
T Consensus 10 ~a~~lv~~L~~~GV~~vFg---~PG~~~~~l~dal~~-~~~i~~i~-~~hE~~Aa~~AdGyAr~tG~pgv~~~TsGpG~~ 84 (556)
T 3hww_A 10 WAAVILEALTRHGVRHICI---APGSRSTLLTLAAAE-NSAFIHHT-HFDERGLGHLALGLAKVSKQPVAVIVTSGTAVA 84 (556)
T ss_dssp HHHHHHHHHHTTTCCEEEE---CCCTTSHHHHHHHHH-CTTCEEEE-CSCHHHHHHHHHHHHHHHCSCEEEEECSSHHHH
T ss_pred HHHHHHHHHHHCCCCEEEE---cCCCCcHHHHHHHhh-CCCceEEE-ecCCcHHHHHHHHHHHhhCCCEEEEECCCcHHH
Confidence 456666655543 233332 2334333 33433 344 6665 47899999999999986 543333 45888887
Q ss_pred HHHHHHHHHHhcCCCCEEEEEeCCCc--cCCCCCCcCcHHHHHHhcCCCCcEEEe--eCC---HHHHHHHHHHHhhh-CC
Q 004946 480 RAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDITFMSCLPNMIVMA--PSD---EDELVDMVATVASI-DD 551 (722)
Q Consensus 480 ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~d~a~~~~iP~l~V~~--Psd---~~E~~~~l~~a~~~-~~ 551 (722)
.++--| ..+...+.||+++...... .|.+ .||......+++.+-.+.... |.+ ++++..+++.|+.. ..
T Consensus 85 N~~~gi-a~A~~d~vPll~itG~~~~~~~g~~--~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~i~~~i~~A~~~~r~ 161 (556)
T 3hww_A 85 NLYPAL-IEAGLTGEKLILLTADRPPELIDCG--ANQAIRQPGMFASHPTHSISLPRPTQDIPARWLVSTIDHALGTLHA 161 (556)
T ss_dssp TTHHHH-HHHHHHCCCEEEEEEECCGGGSSSS--CTTCCCCTTTTTTCSSEEEECCCCCTTSCHHHHHHHHHHHHHSCCS
T ss_pred hhhHHH-HHHHHhCCCeEEEeCCCCHHHhccC--CCccccHHHHHhhheeEEEecCCCcccccHHHHHHHHHHHHhcCCC
Confidence 777544 5777889998887633222 3332 477665567777776665543 332 45688899999852 34
Q ss_pred CCEEEEecCC
Q 004946 552 RPVCFRYPRG 561 (722)
Q Consensus 552 ~Pv~ir~~r~ 561 (722)
+||+|-+|..
T Consensus 162 GPV~i~iP~d 171 (556)
T 3hww_A 162 GGVHINCPFA 171 (556)
T ss_dssp SCEEEEEECC
T ss_pred CCEEEeCCcC
Confidence 7999999874
No 72
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=87.29 E-value=4.2 Score=46.04 Aligned_cols=115 Identities=11% Similarity=0.057 Sum_probs=79.3
Q ss_pred CceeecccchHHHHHHHHHHhcC-CCe-eEEEecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCc--cCC-CCCCcCcHH
Q 004946 443 ERYFDVGMAEQHAVTFSAGLACG-GLK-PFCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGS-DGPTQCGAF 517 (722)
Q Consensus 443 ~R~~d~GIaE~~av~~AaGlA~~-G~~-p~~~t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~-dG~TH~~~~ 517 (722)
=|++.+ ..|++|..+|.|.|.. |.. .++.|+.+....++.-+ ..+...++||+++...... .|. .| .+|...
T Consensus 48 i~~i~~-~~E~~Aa~~A~GyAr~tg~pgv~~~TsGpG~~N~~~~i-~~A~~~~vPll~itg~~~~~~~~~~~~-~~Q~~d 124 (568)
T 2c31_A 48 QRFYSF-RHEQHAGYAASIAGYIEGKPGVCLTVSAPGFLNGVTSL-AHATTNCFPMILLSGSSEREIVDLQQG-DYEEMD 124 (568)
T ss_dssp CEEEEC-SSHHHHHHHHHHHHHHHSSCEEEEECSHHHHHHHHHHH-HHHHHHTCCEEEEEEECCHHHHHTTCC-CTTCCC
T ss_pred CcEEEe-CcHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHHHHHH-HHHHhcCCCEEEEccCCCccccCCCCC-cccccC
Confidence 467666 9999999999999997 543 33345888888777544 6777889998887643322 231 12 356555
Q ss_pred HHHHhcCCCCcEEEeeCCHHHHHHHHHHHhhh----CCCCEEEEecCC
Q 004946 518 DITFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRG 561 (722)
Q Consensus 518 d~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~----~~~Pv~ir~~r~ 561 (722)
...+++.+-.+. +...+++++...+..|+.. ..+||+|-+|..
T Consensus 125 q~~~~~~~tk~~-~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 171 (568)
T 2c31_A 125 QMNVARPHCKAS-FRINSIKDIPIGIARAVRTAVSGRPGGVYVDLPAK 171 (568)
T ss_dssp HHHHSGGGSSEE-EECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEETH
T ss_pred HHHHHHhhhhee-eecCCHHHHHHHHHHHHHHhcCCCCceEEEeCCHH
Confidence 567888777664 4455666777777776652 457999998876
No 73
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=86.91 E-value=8.9 Score=43.21 Aligned_cols=114 Identities=14% Similarity=0.071 Sum_probs=72.3
Q ss_pred ceeecccchHHHHHHHHHHhcC-CCeeEE-EecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCc--cCCCCCCcCcH---
Q 004946 444 RYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGA--- 516 (722)
Q Consensus 444 R~~d~GIaE~~av~~AaGlA~~-G~~p~~-~t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~--- 516 (722)
|++.+ ..|++|+.+|.|.|.. | .++| .|+.+....++.-+ ..+...++||+++...... .+.+-..||..
T Consensus 44 ~~v~~-~~E~~Aa~~A~Gyar~tg-~~v~~~TsGpG~~N~~~gi-a~A~~~~~Pll~itg~~~~~~~~~~~~~~~~~g~~ 120 (563)
T 2vk8_A 44 RWAGN-ANELNAAYAADGYARIKG-MSCIITTFGVGELSALNGI-AGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNG 120 (563)
T ss_dssp EECCC-SSHHHHHHHHHHHHHHHS-CEEEEEETTHHHHHHHHHH-HHHHHHTCCEEEEEEECCHHHHHTTCCCTTSCSSS
T ss_pred eEEcc-CchHHHHHHHHHHHHhhC-CcEEEEcCCCcHHHHHHHH-HHHHhhCCCEEEEECCCChHHhhcccccccccCCc
Confidence 66665 9999999999999986 7 5444 45888877777544 5667789998887643322 12222222211
Q ss_pred ---HHHHHhcCCCCcEEEeeCCHH----HHHHHHHHHhhhCCCCEEEEecCCC
Q 004946 517 ---FDITFMSCLPNMIVMAPSDED----ELVDMVATVASIDDRPVCFRYPRGA 562 (722)
Q Consensus 517 ---~d~a~~~~iP~l~V~~Psd~~----E~~~~l~~a~~~~~~Pv~ir~~r~~ 562 (722)
+...+++.+-.+.. ...+++ .+..+++.|... .+||+|-+|...
T Consensus 121 ~~q~~~~~~~~~~k~~~-~v~~~~~~~~~i~~A~~~A~~~-~GPV~l~iP~d~ 171 (563)
T 2vk8_A 121 DFTVFHRMSANISETTA-MITDIATAPAEIDRCIRTTYVT-QRPVYLGLPANL 171 (563)
T ss_dssp CSSHHHHHHHTTCSEEE-ECCCTTTHHHHHHHHHHHHHHH-TSCEEEEEETTG
T ss_pred chHHHHHHhhhhEEEEE-EeCCHHHHHHHHHHHHHHHHhC-CCCEEEEechhh
Confidence 23567787776643 444544 444455555443 489999998864
No 74
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=86.78 E-value=2.9 Score=47.52 Aligned_cols=147 Identities=14% Similarity=0.171 Sum_probs=86.7
Q ss_pred HHHHHHHHHhcC-CCEEEEecCCCCccch---HHHHHhCCC-ceeecccchHHHHHHHHHHhcC-CCeeEE-EecHhhHH
Q 004946 407 FIEALVMEAEKD-KDIVVVHAGMEMDLSL---QLFQEKFPE-RYFDVGMAEQHAVTFSAGLACG-GLKPFC-IIPSAFLQ 479 (722)
Q Consensus 407 ~~~~L~~~~~~d-~~iv~i~ad~~~~~~l---~~f~~~~p~-R~~d~GIaE~~av~~AaGlA~~-G~~p~~-~t~~~Fl~ 479 (722)
.++.|.+.+++. -+-+.. ++|+..+ +.|.+ .++ |++-+ ..|++|.-+|.|.|.. |...+| .|+.+...
T Consensus 13 ~a~~lv~~L~~~GV~~vFg---~PG~~~~~l~dal~~-~~~i~~i~~-~hE~~Aa~aAdGyAr~tG~pgv~~~TsGpG~~ 87 (578)
T 3lq1_A 13 YLAAFIEELVQAGVKEAII---SPGSRSTPLALMMAE-HPILKIYVD-VDERSAGFFALGLAKASKRPVVLLCTSGTAAA 87 (578)
T ss_dssp HHHHHHHHHHHTTCCEEEE---CCCTTTHHHHHHHHH-CSSCEEEEC-SSHHHHHHHHHHHHHHHCCCEEEEECSSHHHH
T ss_pred HHHHHHHHHHHcCCCEEEE---CCCCccHHHHHHHHh-CCCceEEEe-cCcHHHHHHHHHHHHhhCCCEEEEECCchhhh
Confidence 445555555443 233332 2344332 33433 343 77766 7999999999999987 543333 45888887
Q ss_pred HHHHHHHHHHhcCCCCEEEEEeCCCc--cCCCCCCcCcHHHHHHhcCCCCcEEE--eeCCHHH----HHHHHHHHhhh--
Q 004946 480 RAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDITFMSCLPNMIVM--APSDEDE----LVDMVATVASI-- 549 (722)
Q Consensus 480 ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~d~a~~~~iP~l~V~--~Psd~~E----~~~~l~~a~~~-- 549 (722)
.++--| ..+...++||+++...... .|. | .+|......+++.+-.+... .|.+..+ +..+++.|+..
T Consensus 88 N~~~gi-a~A~~d~vPll~itG~~p~~~~g~-~-~~Qe~d~~~~~~~~tk~~~~v~~~~~~~~~~~~i~~~l~~A~~~A~ 164 (578)
T 3lq1_A 88 NYFPAV-AEANLSQIPLIVLTADRPHELRNV-G-APQAMDQLHLYGSHVKDFTDMALPENSEEMLRYAKWHGSRAVDIAM 164 (578)
T ss_dssp TTHHHH-HHHHHTTCCEEEEEEECCGGGTTS-S-CTTCCCCTTTTGGGSSEEEECCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHH-HHHHhcCCCeEEEeCCCCHHhhcC-C-CCCCcCHhhHHhhheeeEeecCCCCCchHHHHHHHHHHHHHHHHhh
Confidence 777544 6777889998887632221 232 2 35555445666766655443 4555333 22345555542
Q ss_pred --CCCCEEEEecCC
Q 004946 550 --DDRPVCFRYPRG 561 (722)
Q Consensus 550 --~~~Pv~ir~~r~ 561 (722)
..+||+|-+|..
T Consensus 165 ~gr~GPV~l~iP~d 178 (578)
T 3lq1_A 165 KTPRGPVHLNFPLR 178 (578)
T ss_dssp SSSCCCEEEEEECC
T ss_pred CCCCCcEEEECccC
Confidence 478999999874
No 75
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=85.62 E-value=2.9 Score=47.81 Aligned_cols=115 Identities=14% Similarity=0.159 Sum_probs=73.6
Q ss_pred ceeecccchHHHHHHHHHHhcCCCee-E-EEecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCc--cCCCCCCcCcHHHH
Q 004946 444 RYFDVGMAEQHAVTFSAGLACGGLKP-F-CIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGAFDI 519 (722)
Q Consensus 444 R~~d~GIaE~~av~~AaGlA~~G~~p-~-~~t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~~d~ 519 (722)
|++-+ ..|++|..+|.|.|...-|| + +.|+.+....++.-| .++-..++||+++...... .|.+ .+|.....
T Consensus 71 ~~i~~-~hE~~Aa~aA~GyAr~tgkpgv~~~TsGpG~~N~~~gi-a~A~~~~vPlv~ItG~~~~~~~g~~--~~Q~~d~~ 146 (604)
T 2x7j_A 71 SVHVQ-IDERSAGFFALGLAKAKQRPVLLICTSGTAAANFYPAV-VEAHYSRVPIIVLTADRPHELREVG--APQAINQH 146 (604)
T ss_dssp EEEEC-SSHHHHHHHHHHHHHHHTSCEEEEECSSHHHHTTHHHH-HHHHHHTCCEEEEEEECCGGGSSSC--CTTCCCCT
T ss_pred eEEEe-cChHHHHHHHHHHHHhhCCCEEEEECChhHHHHHHHHH-HHHhhcCCCEEEEeCCCCHHHhCCC--CCCcCcHH
Confidence 77776 99999999999999974444 3 345888877766544 5777789998887633222 3332 35555555
Q ss_pred HHhcCCCCcEEEe--eCCH----HHHHHHHHHHhh----hCCCCEEEEecCCC
Q 004946 520 TFMSCLPNMIVMA--PSDE----DELVDMVATVAS----IDDRPVCFRYPRGA 562 (722)
Q Consensus 520 a~~~~iP~l~V~~--Psd~----~E~~~~l~~a~~----~~~~Pv~ir~~r~~ 562 (722)
.+++.+-.+.... |.+. .++...+..|+. -..+||+|-+|...
T Consensus 147 ~~~~~~tk~~~~v~~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d~ 199 (604)
T 2x7j_A 147 FLFGNFVKFFTDSALPEESPQMLRYIRTLASRAAGEAQKRPMGPVHVNVPLRE 199 (604)
T ss_dssp TTTGGGSSCEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEECCS
T ss_pred HHhhhheeeeeecCCCcccchhHHHHHHHHHHHHHHhhCCCCCcEEEEcccCc
Confidence 6667666664433 3330 015555555554 24689999998764
No 76
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=83.39 E-value=9.8 Score=42.87 Aligned_cols=115 Identities=14% Similarity=0.108 Sum_probs=78.8
Q ss_pred CceeecccchHHHHHHHHHHhcCCCee--EEEecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCc--cCC-CCCCcCcHH
Q 004946 443 ERYFDVGMAEQHAVTFSAGLACGGLKP--FCIIPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGS-DGPTQCGAF 517 (722)
Q Consensus 443 ~R~~d~GIaE~~av~~AaGlA~~G~~p--~~~t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~-dG~TH~~~~ 517 (722)
=|++.+ ..|++|..+|.|.|....+| ++.|+.+....++--+ ..+...++||+++...... .|. .| .+|...
T Consensus 46 i~~i~~-~hE~~Aa~~A~Gyar~tg~pgv~~~TsGpG~~N~~~gi-~~A~~~~vPll~itg~~~~~~~~~~~~-~~Q~~d 122 (564)
T 2q28_A 46 IRYIGF-RHEQSAGYAAAASGFLTQKPGICLTVSAPGFLNGLTAL-ANATVNGFPMIMISGSSDRAIVDLQQG-DYEELD 122 (564)
T ss_dssp CEEEEC-SSHHHHHHHHHHHHHHHSSCEEEEECSHHHHHHHHHHH-HHHHHHTCCEEEEEEECCHHHHHTTSC-CTTCCC
T ss_pred CcEEee-CCHHHHHHHHHHHHHHhCCCEEEEEccCchHHHHHHHH-HHHHhcCCCEEEEeCCCCccccCCCCC-cccccc
Confidence 367666 99999999999999984343 3345888887777544 6777889998887643322 231 12 356555
Q ss_pred HHHHhcCCCCcEEEeeCCHHHHHHHHHHHhhh----CCCCEEEEecCC
Q 004946 518 DITFMSCLPNMIVMAPSDEDELVDMVATVASI----DDRPVCFRYPRG 561 (722)
Q Consensus 518 d~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~----~~~Pv~ir~~r~ 561 (722)
...+++.+-.+. +...+++++...+..|+.. ..+||+|-+|..
T Consensus 123 q~~~~~~~tk~~-~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 169 (564)
T 2q28_A 123 QMNAAKPYAKAA-FRVNQPQDLGIALARAIRVSVSGRPGGVYLDLPAN 169 (564)
T ss_dssp HHHHHGGGSSEE-EECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred HHHHHHHhhhee-eecCCHHHHHHHHHHHHHHHhcCCCceEEEEcCHH
Confidence 567888877764 4445666666666666652 458999988875
No 77
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=82.30 E-value=11 Score=42.40 Aligned_cols=118 Identities=11% Similarity=0.052 Sum_probs=71.9
Q ss_pred CCC-ceeecccchHHHHHHHHHHhcCCCeeEEE-ecHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCc--cCCCCCCcCcH
Q 004946 441 FPE-RYFDVGMAEQHAVTFSAGLACGGLKPFCI-IPSAFLQRAYDQVVNDVDQQRLPVRFVITSAGL--VGSDGPTQCGA 516 (722)
Q Consensus 441 ~p~-R~~d~GIaE~~av~~AaGlA~~G~~p~~~-t~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~--~G~dG~TH~~~ 516 (722)
.++ |++. ...|++|+.+|.|.|.....++|. |+.+....++--+ ..+...++|++++...... .+.+...||..
T Consensus 41 ~~~i~~i~-~~~E~~A~~~A~Gyar~tg~~v~~~tsGpG~~N~~~gv-~~A~~~~~Pll~itg~~p~~~~~~~~~~~~~~ 118 (552)
T 1ovm_A 41 SPDICWVG-CANELNASYAADGYARCKGFAALLTTFGVGELSAMNGI-AGSYAEHVPVLHIVGAPGTAAQQRGELLHHTL 118 (552)
T ss_dssp CSSCEEEE-CSSHHHHHHHHHHHHHHHSCEEEEEETTHHHHHTHHHH-HHHHHTTCCEEEEEEECCHHHHHHTCCCTTSC
T ss_pred CCCceEEe-eCcHHHHHHHHHHHHHhhCCcEEEEccCCcHHHHHHHH-HHHhhhcCCEEEEECCCCHHHHhccccccccc
Confidence 344 5554 499999999999999863355444 5888877777544 5777889998887643222 12111222110
Q ss_pred ------HHHHHhcCCCCcEEEeeCCHHHHHHHHHHHhhh---CCCCEEEEecCCC
Q 004946 517 ------FDITFMSCLPNMIVMAPSDEDELVDMVATVASI---DDRPVCFRYPRGA 562 (722)
Q Consensus 517 ------~d~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~~---~~~Pv~ir~~r~~ 562 (722)
+...+++.+-.+....+. .++...+..|+.. ..+||+|-+|...
T Consensus 119 g~~~~q~~~~~~~~~tk~~~~v~~--~~~~~~i~~A~~~a~~~~GPV~l~iP~d~ 171 (552)
T 1ovm_A 119 GDGEFRHFYHMSEPITVAQAVLTE--QNACYEIDRVLTTMLRERRPGYLMLPADV 171 (552)
T ss_dssp SSSCCSHHHHHTGGGCSEEEECCT--TTHHHHHHHHHHHHHHHTCCEEEEEEHHH
T ss_pred CCCcHHHHHHHHHhheeEEEEEcc--ccHHHHHHHHHHHHHhCCCCEEEEeehhh
Confidence 224677777666555543 4444444444431 2489999888753
No 78
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=82.04 E-value=2.1 Score=46.01 Aligned_cols=102 Identities=16% Similarity=0.167 Sum_probs=60.0
Q ss_pred HHHHHHHHhcC----C-CeeEEEec--HhhHHHHHHHHHHHHhcCCCCEEEEEeCCCccCCCCCCcC-----cHHHHHHh
Q 004946 455 AVTFSAGLACG----G-LKPFCIIP--SAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQC-----GAFDITFM 522 (722)
Q Consensus 455 av~~AaGlA~~----G-~~p~~~t~--~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~-----~~~d~a~~ 522 (722)
.+..|.|+|++ | -+++++++ ..|.+-.+-+-++.++..++||++++.+.++ |..++++. ...+++-.
T Consensus 147 ~lp~AvG~A~A~~~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~-gi~~~~~~~~~~~d~~~~a~a 225 (368)
T 1w85_A 147 QYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRF-AISTPVEKQTVAKTLAQKAVA 225 (368)
T ss_dssp HHHHHHHHHHHHHHTTCSCCEEEEEETGGGGSHHHHHHHHHHHHTTCCEEEEEEECSE-ETTEEGGGTCSCSCSGGGGGG
T ss_pred cccHHHHHHHHhHhhCCCCeEEEEEchhhhhhcHHHHHHHHHHHHCcCEEEEEEcCCc-cceeccccccCCCCHHHHHHH
Confidence 44566666654 2 23444443 5554322223457888999999999976664 32222221 12232222
Q ss_pred cCCCCcEEEeeCCHHHHHHHHHHHhhh---CCCCEEEEe
Q 004946 523 SCLPNMIVMAPSDEDELVDMVATVASI---DDRPVCFRY 558 (722)
Q Consensus 523 ~~iP~l~V~~Psd~~E~~~~l~~a~~~---~~~Pv~ir~ 558 (722)
-.+|++.| .=.|+.++...++.|++. .++|++|-.
T Consensus 226 ~G~~~~~V-dG~D~~av~~a~~~A~~~~r~~~gP~lIe~ 263 (368)
T 1w85_A 226 AGIPGIQV-DGMDPLAVYAAVKAARERAINGEGPTLIET 263 (368)
T ss_dssp TTCCEEEE-ETTCHHHHHHHHHHHHHHHHTTSCCEEEEE
T ss_pred CCCCEEEE-cCCCHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 34665543 334799999999999862 578999854
No 79
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=80.84 E-value=2.5 Score=45.93 Aligned_cols=102 Identities=13% Similarity=0.116 Sum_probs=59.0
Q ss_pred HHHHHHHhcC------CCeeEEEe-cHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCccCCCCCCcC--cHHHHHHhcCCC
Q 004946 456 VTFSAGLACG------GLKPFCII-PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQC--GAFDITFMSCLP 526 (722)
Q Consensus 456 v~~AaGlA~~------G~~p~~~t-~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~--~~~d~a~~~~iP 526 (722)
+..|.|+|++ ..+++|.+ -..|.+-.+-+-++.++..++|+++++.+.++ +-.+++.. ...|++-...--
T Consensus 168 lp~AvG~AlA~~~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~-~i~~~~~~~~~~~d~~~~a~a~ 246 (400)
T 2bfd_A 168 IPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGY-AISTPTSEQYRGDGIAARGPGY 246 (400)
T ss_dssp HHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHHTTCCEEEEEEECSE-ETTEEGGGTCSSSTTGGGTGGG
T ss_pred ccHHHHHHHhhhhhCCCCeEEEEECchhhhcChHHHHHHHHHHHCcCEEEEEECCce-eeeecccccCCCCCHHHHHHHc
Confidence 4566666664 34444444 35554433334567888899999999977664 32333322 112322212112
Q ss_pred CcEEE--eeCCHHHHHHHHHHHhh---hCCCCEEEEe
Q 004946 527 NMIVM--APSDEDELVDMVATVAS---IDDRPVCFRY 558 (722)
Q Consensus 527 ~l~V~--~Psd~~E~~~~l~~a~~---~~~~Pv~ir~ 558 (722)
|+.++ .=.|+.++...++.|++ ..++|++|-.
T Consensus 247 G~~~~~VdG~D~~av~~a~~~A~~~ar~~~~P~lIe~ 283 (400)
T 2bfd_A 247 GIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 283 (400)
T ss_dssp TCEEEEEETTCHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 44443 33478899999988876 2578998854
No 80
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=76.52 E-value=6.2 Score=45.76 Aligned_cols=88 Identities=13% Similarity=0.076 Sum_probs=55.1
Q ss_pred eEEEecHhh-HH--HHHHHHHHHHhcCCCC-EEEEEeCCCccCCCCCCcCc-HHHH-HHhcCCCCcEEE-ee---CCHHH
Q 004946 469 PFCIIPSAF-LQ--RAYDQVVNDVDQQRLP-VRFVITSAGLVGSDGPTQCG-AFDI-TFMSCLPNMIVM-AP---SDEDE 538 (722)
Q Consensus 469 p~~~t~~~F-l~--ra~dqi~~~~a~~~lp-Vv~v~~~~G~~G~dG~TH~~-~~d~-a~~~~iP~l~V~-~P---sd~~E 538 (722)
.++++..+. ++ ..++ -++.++..+|| ++++++..++ +-+|++... ..|+ ..++. -||.++ .- .|..+
T Consensus 150 ~v~~~~GDG~~~eG~~~E-al~~A~~~~L~~li~i~d~N~~-~i~~~~~~~~~~d~~~~~~a-~G~~~~~~vdG~~d~~~ 226 (673)
T 1r9j_A 150 YTYVYCGDGCLMEGVCQE-ALSLAGHLALEKLIVIYDSNYI-SIDGSTSLSFTEQCHQKYVA-MGFHVIEVKNGDTDYEG 226 (673)
T ss_dssp CEEEEECHHHHHSHHHHH-HHHHHHHHTCTTEEEEEEECSB-CSSSBGGGTCCCCHHHHHHH-TTCEEEEESCTTTCHHH
T ss_pred EEEEEECcchhcccHHHH-HHHHHHHhCCCcEEEEEECCCC-ccccchhhccCHhHHHHHHH-CCCeEEEEeCCCCCHHH
Confidence 444544333 33 3354 34678888998 7888777664 334444321 2233 34444 489888 43 68899
Q ss_pred HHHHHHHHhhhCCCCEEEEec
Q 004946 539 LVDMVATVASIDDRPVCFRYP 559 (722)
Q Consensus 539 ~~~~l~~a~~~~~~Pv~ir~~ 559 (722)
+...+..|.+..++|++|...
T Consensus 227 l~~Al~~A~~~~~~P~lI~~~ 247 (673)
T 1r9j_A 227 LRKALAEAKATKGKPKMIVQT 247 (673)
T ss_dssp HHHHHHHHHHCCSSCEEEEEE
T ss_pred HHHHHHHHHHcCCCCEEEEEe
Confidence 999999887646789998653
No 81
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=76.37 E-value=4.7 Score=46.83 Aligned_cols=87 Identities=14% Similarity=0.093 Sum_probs=53.4
Q ss_pred eEEEecHhh-HH--HHHHHHHHHHhcCCCC-EEEEEeCCCccCCCCCCcC-cHHHH-HHhcCCCCcEEEeeC----CHHH
Q 004946 469 PFCIIPSAF-LQ--RAYDQVVNDVDQQRLP-VRFVITSAGLVGSDGPTQC-GAFDI-TFMSCLPNMIVMAPS----DEDE 538 (722)
Q Consensus 469 p~~~t~~~F-l~--ra~dqi~~~~a~~~lp-Vv~v~~~~G~~G~dG~TH~-~~~d~-a~~~~iP~l~V~~Ps----d~~E 538 (722)
.++++..+. ++ ..++ -++.++..+|| ++++++..++ +-++++.. ...|+ ..+.. -||.++.+. |..+
T Consensus 150 ~vv~i~GDG~~~eG~~~E-al~~A~~~~L~~li~i~~nN~~-~i~~~~~~~~~~d~~~~~~a-~G~~~~~~vdG~~d~~~ 226 (680)
T 1gpu_A 150 YTYVFLGDGCLQEGISSE-ASSLAGHLKLGNLIAIYDDNKI-TIDGATSISFDEDVAKRYEA-YGWEVLYVENGNEDLAG 226 (680)
T ss_dssp CEEEEECHHHHHSHHHHH-HHHHHHHTTCTTEEEEEEECSE-ETTEEGGGTCCCCHHHHHHH-HTCEEEEESCTTTCHHH
T ss_pred eEEEEECCCccchhhHHH-HHHHHHHhCCCcEEEEEECCCc-eEecccccccCccHHHHHHh-cCCeEEEEecCCCCHHH
Confidence 445554333 33 3443 34778889998 8888877665 33344431 12233 23344 378887343 7889
Q ss_pred HHHHHHHHhhhCCCCEEEEe
Q 004946 539 LVDMVATVASIDDRPVCFRY 558 (722)
Q Consensus 539 ~~~~l~~a~~~~~~Pv~ir~ 558 (722)
+...+..|.+..++|++|..
T Consensus 227 l~~al~~A~~~~~~P~lI~~ 246 (680)
T 1gpu_A 227 IAKAIAQAKLSKDKPTLIKM 246 (680)
T ss_dssp HHHHHHHHHHCTTSCEEEEE
T ss_pred HHHHHHHHHHCCCCCEEEEE
Confidence 99999988764578998865
No 82
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=75.74 E-value=3.3 Score=45.04 Aligned_cols=101 Identities=11% Similarity=0.014 Sum_probs=57.2
Q ss_pred HHHHHHHhcC------CCeeEEEe-cHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCccCCCCCCcC---cHHH---HHHh
Q 004946 456 VTFSAGLACG------GLKPFCII-PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQC---GAFD---ITFM 522 (722)
Q Consensus 456 v~~AaGlA~~------G~~p~~~t-~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~---~~~d---~a~~ 522 (722)
+..|.|+|++ +.+++|.+ -..|.+-.+-+-++.++..++||++++.+.++ |..+++.. ...| .+-.
T Consensus 187 lp~AvGaA~A~k~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~Vv~NN~~-gi~~~~~~~~~~~~d~a~~a~a 265 (407)
T 1qs0_A 187 FVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTALTFAHVYRAPVILNVVNNQW-AISTFQAIAGGESTTFAGRGVG 265 (407)
T ss_dssp HHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHHTCCEEEEEEECSE-ETTEEGGGGTTTTCCSTHHHHH
T ss_pred hhHHHHHHHHHHHhCCCCEEEEEECCchhhcChHHHHHHHHHHHCcCEEEEEECCCc-ceeeccccccCCCCCHHHHHHH
Confidence 4556666654 34444443 24443322224457888899999999876664 22222221 1122 2222
Q ss_pred cCCCCcEEEeeCCHHHHHHHHHHHhhh---CCCCEEEEe
Q 004946 523 SCLPNMIVMAPSDEDELVDMVATVASI---DDRPVCFRY 558 (722)
Q Consensus 523 ~~iP~l~V~~Psd~~E~~~~l~~a~~~---~~~Pv~ir~ 558 (722)
-.+|++.| .=.|+.++...++.|++. .++|++|-.
T Consensus 266 ~G~~~~~V-dG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 303 (407)
T 1qs0_A 266 CGIASLRV-DGNDFVAVYAASRWAAERARRGLGPSLIEW 303 (407)
T ss_dssp TTCEEEEE-ETTCHHHHHHHHHHHHHHHHTTSCCEEEEE
T ss_pred cCCeEEEE-cCCCHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 34554433 334788999999988753 578998854
No 83
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=75.69 E-value=5.6 Score=42.52 Aligned_cols=109 Identities=13% Similarity=0.002 Sum_probs=59.8
Q ss_pred ecccchHHHHHHHHHHhcC----C-CeeEEEe--cHhhHHHHHHHHHHHHhcCCCCEEEEEeCCCccCCCCCCc-----C
Q 004946 447 DVGMAEQHAVTFSAGLACG----G-LKPFCII--PSAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQ-----C 514 (722)
Q Consensus 447 d~GIaE~~av~~AaGlA~~----G-~~p~~~t--~~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH-----~ 514 (722)
.+|.-+ +.+++|.|+|++ + -++++++ -..|.+-.+-.-++.++..++|+++++.+.+ .|-.+++. .
T Consensus 142 ~~g~lG-~~l~~a~G~A~a~k~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~-~gi~~~~~~~~~~~ 219 (367)
T 1umd_A 142 VASPIA-SHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNF-YAISVDYRHQTHSP 219 (367)
T ss_dssp CCSSTT-TTHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHTTCSEEEEEEECS-EETTEEHHHHCSSS
T ss_pred CCchhh-hhhhHHHHHHHHHHHhCCCCeEEEEEcccccccCcHHHHHHHHHHhCcCEEEEEecCC-eeeccChhhccCCC
Confidence 444444 234555555543 3 2344444 3555333132334678889999999987766 34333321 1
Q ss_pred cHHHHHHhcCCCCcEEEeeCCHHHHHHHHHHHhh---hCCCCEEEEe
Q 004946 515 GAFDITFMSCLPNMIVMAPSDEDELVDMVATVAS---IDDRPVCFRY 558 (722)
Q Consensus 515 ~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~---~~~~Pv~ir~ 558 (722)
...+++-.-.+|.+. +.-.|..++...++.|++ ..++|++|-.
T Consensus 220 d~~~~a~a~G~~~~~-Vdg~d~~av~~a~~~A~~~a~~~~gP~lIe~ 265 (367)
T 1umd_A 220 TIADKAHAFGIPGYL-VDGMDVLASYYVVKEAVERARRGEGPSLVEL 265 (367)
T ss_dssp CSGGGGGGTTSCEEE-EETTCHHHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CHHHHHHHcCCcEEE-eCCCCHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 122222222456554 355778888877777765 2478999854
No 84
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=75.64 E-value=5.8 Score=45.98 Aligned_cols=87 Identities=13% Similarity=0.092 Sum_probs=53.5
Q ss_pred eEEEecHhh-HH--HHHHHHHHHHhcCCCC-EEEEEeCCCccCCCCCCc-CcHHHH-HHhcCCCCcEEEee---CCHHHH
Q 004946 469 PFCIIPSAF-LQ--RAYDQVVNDVDQQRLP-VRFVITSAGLVGSDGPTQ-CGAFDI-TFMSCLPNMIVMAP---SDEDEL 539 (722)
Q Consensus 469 p~~~t~~~F-l~--ra~dqi~~~~a~~~lp-Vv~v~~~~G~~G~dG~TH-~~~~d~-a~~~~iP~l~V~~P---sd~~E~ 539 (722)
.++++..+. ++ ..++ -++.++..++| ++++++..++ +-++++. +...|+ ..+.. -||.++.+ .|..++
T Consensus 148 ~v~~~~GDG~~~eG~~~E-al~~A~~~~L~~li~i~~nN~~-~i~~~~~~~~~~d~~~~~~a-~G~~~~~~vdG~d~~~l 224 (669)
T 2r8o_A 148 YTYAFMGDGCMMEGISHE-VCSLAGTLKLGKLIAFYDDNGI-SIDGHVEGWFTDDTAMRFEA-YGWHVIRDIDGHDAASI 224 (669)
T ss_dssp CEEEEECHHHHHSHHHHH-HHHHHHHTTCTTEEEEEEECSE-ETTEEGGGTCCCCHHHHHHH-TTCEEEEEEETTCHHHH
T ss_pred eEEEEECHhHhcchHHHH-HHHHHHHcCCCcEEEEEECCCc-EeccccccccCccHHHHHHH-CCCeEEeEECCCCHHHH
Confidence 445544333 33 3453 34778889998 7777777664 3334443 112233 23444 37877633 379999
Q ss_pred HHHHHHHhhhCCCCEEEEe
Q 004946 540 VDMVATVASIDDRPVCFRY 558 (722)
Q Consensus 540 ~~~l~~a~~~~~~Pv~ir~ 558 (722)
...++.|.+..++|++|..
T Consensus 225 ~~al~~a~~~~~~P~lI~~ 243 (669)
T 2r8o_A 225 KRAVEEARAVTDKPSLLMC 243 (669)
T ss_dssp HHHHHHHHHCCSSCEEEEE
T ss_pred HHHHHHHHhcCCCCEEEEE
Confidence 9999998764578998865
No 85
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=75.31 E-value=7.2 Score=33.75 Aligned_cols=69 Identities=13% Similarity=0.068 Sum_probs=48.0
Q ss_pred CCcEEEEEech----hhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHh-cCCCeEEEEcCCCCCChHHH
Q 004946 588 GKDVALLGYGA----MVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELC-QNHTFLITVEEGSIGGFGSH 657 (722)
Q Consensus 588 G~dv~lva~Gs----~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~-~~~~~vvvvEe~~~gG~gs~ 657 (722)
..+|+|++.++ ....|..|.+.|++.|+..+.+|+..- |--.+.+.+.. ..+=..|++.....||+...
T Consensus 17 ~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~-~~~~~~l~~~~g~~tvP~ifi~g~~iGG~d~l 90 (109)
T 3ipz_A 17 SEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILEN-EMLRQGLKEYSNWPTFPQLYIGGEFFGGCDIT 90 (109)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGC-HHHHHHHHHHHTCSSSCEEEETTEEEECHHHH
T ss_pred cCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCC-HHHHHHHHHHHCCCCCCeEEECCEEEeCHHHH
Confidence 45789999884 788999999999999999999998631 11122333332 22335677877668998643
No 86
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=74.41 E-value=8.1 Score=44.91 Aligned_cols=88 Identities=11% Similarity=0.090 Sum_probs=55.6
Q ss_pred eEEEecHhh-HH--HHHHHHHHHHhcCCCC-EEEEEeCCCccCCCCCCcCc-HHHH-HHhcCCCCcEEEee---CCHHHH
Q 004946 469 PFCIIPSAF-LQ--RAYDQVVNDVDQQRLP-VRFVITSAGLVGSDGPTQCG-AFDI-TFMSCLPNMIVMAP---SDEDEL 539 (722)
Q Consensus 469 p~~~t~~~F-l~--ra~dqi~~~~a~~~lp-Vv~v~~~~G~~G~dG~TH~~-~~d~-a~~~~iP~l~V~~P---sd~~E~ 539 (722)
.++++..+. ++ .++ +-++.++..++| ++++.+..++ +-+|+++.. ..|+ ..+.+. ||.++.+ .|..++
T Consensus 174 ~v~~i~GDG~l~eG~~~-Eal~~A~~~~L~~livI~dnN~~-~i~~~~~~~~~~d~~~~~~a~-G~~~~~v~DG~d~~~l 250 (690)
T 3m49_A 174 YTYAICGDGDLMEGVSA-EASSLAAHLQLGRLVVLYDSNDI-SLDGDLNRSFSESVEDRYKAY-GWQVIRVEDGNDIEAI 250 (690)
T ss_dssp CEEEEECHHHHHSHHHH-HHHHHHHHTTCTTEEEEEEECSB-CSSSBGGGTCCCCHHHHHHHH-TCEEEEESCTTCHHHH
T ss_pred eEEEEECchhhhhccHH-HHHHHHHHhCCCeEEEEEECCCe-ecccchhhccchhHHHHHHHc-CCcEEEEecCCCHHHH
Confidence 344444333 33 345 345788889998 6667676664 444554331 1222 334443 8999988 689999
Q ss_pred HHHHHHHhhhCCCCEEEEec
Q 004946 540 VDMVATVASIDDRPVCFRYP 559 (722)
Q Consensus 540 ~~~l~~a~~~~~~Pv~ir~~ 559 (722)
...++.|.+..++|++|...
T Consensus 251 ~~Al~~a~~~~~~P~lI~v~ 270 (690)
T 3m49_A 251 AKAIEEAKADEKRPTLIEVR 270 (690)
T ss_dssp HHHHHHHHHCCSSCEEEEEE
T ss_pred HHHHHHHHhcCCCCEEEEEE
Confidence 99999886535889998653
No 87
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=71.09 E-value=8.2 Score=35.06 Aligned_cols=67 Identities=15% Similarity=0.061 Sum_probs=46.6
Q ss_pred CcEEEEEec----hhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhc-CCCeEEEEcCCCCCChHH
Q 004946 589 KDVALLGYG----AMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQ-NHTFLITVEEGSIGGFGS 656 (722)
Q Consensus 589 ~dv~lva~G----s~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~-~~~~vvvvEe~~~gG~gs 656 (722)
.+|+|.++| .....|..|.+.|++.|+..+.+|+.. .|--.+.+.+... .+=.+|++.....||+..
T Consensus 35 ~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~-d~~~~~~L~~~~G~~tvP~VfI~G~~iGG~d~ 106 (135)
T 2wci_A 35 NPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQ-NPDIRAELPKYANWPTFPQLWVDGELVGGCDI 106 (135)
T ss_dssp CSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGG-CHHHHHHHHHHHTCCSSCEEEETTEEEESHHH
T ss_pred CCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCC-CHHHHHHHHHHHCCCCcCEEEECCEEEEChHH
Confidence 468888888 677899999999999999999999874 2211223333322 233577787766898853
No 88
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=70.54 E-value=14 Score=42.59 Aligned_cols=89 Identities=10% Similarity=0.026 Sum_probs=51.9
Q ss_pred eeEEEecHhh-HH--HHHHHHHHHHhcCCCC-EEEEEeCCCccCCCCCCcCc-HHHH-HHhcCCCCcEEEeeC---CHHH
Q 004946 468 KPFCIIPSAF-LQ--RAYDQVVNDVDQQRLP-VRFVITSAGLVGSDGPTQCG-AFDI-TFMSCLPNMIVMAPS---DEDE 538 (722)
Q Consensus 468 ~p~~~t~~~F-l~--ra~dqi~~~~a~~~lp-Vv~v~~~~G~~G~dG~TH~~-~~d~-a~~~~iP~l~V~~Ps---d~~E 538 (722)
+.++++..+. ++ ..+ +-++.++..+|| ++++++..++ +-+|++... ..|+ ..++.. ||.++.+. |..+
T Consensus 149 ~~v~~i~GDG~l~eG~~~-Eal~~A~~~~L~~livi~dnN~~-~i~~~~~~~~~~d~~~~~~a~-G~~~~~~vdG~d~~~ 225 (663)
T 3kom_A 149 HHTYVFLGDGCLMEGVSH-EACSLAGTLGLNKLVAFWDDNNI-SIDGDTKGWFSDNTPERFRAY-GWHVIENVDGHDFVA 225 (663)
T ss_dssp CCEEEEECHHHHHSHHHH-HHHHHHHHHTCTTEEEEEEECC------CGGGTCCCCHHHHHHHT-TCEEEEEEETTCHHH
T ss_pred CeEEEEECchhhhhchHH-HHHHHHHHhCCCeEEEEEECCCc-ccccchhhhcchhHHHHHHHC-CCeEEEEEcCCCHHH
Confidence 4455554433 23 334 345788889998 6677766664 333443321 1222 344444 88887443 7899
Q ss_pred HHHHHHHHhhhCCCCEEEEec
Q 004946 539 LVDMVATVASIDDRPVCFRYP 559 (722)
Q Consensus 539 ~~~~l~~a~~~~~~Pv~ir~~ 559 (722)
+...++.|.+..++|++|...
T Consensus 226 l~~al~~A~~~~~~P~lI~~~ 246 (663)
T 3kom_A 226 IEKAINEAHSQQQKPTLICCK 246 (663)
T ss_dssp HHHHHHHHHHCSSSCEEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEEe
Confidence 999999886535889998653
No 89
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=70.51 E-value=21 Score=37.34 Aligned_cols=38 Identities=24% Similarity=0.290 Sum_probs=28.4
Q ss_pred Hhhc-CceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEEEEEee
Q 004946 325 FEEL-GLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVVTE 367 (722)
Q Consensus 325 fea~-G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~ 367 (722)
+... |+.++.| .|..+....++.+.+ .++|++|-..+.
T Consensus 138 l~~iP~l~V~~P---sd~~e~~~~l~~A~~--~~~Pv~i~~p~~ 176 (338)
T 1qs0_B 138 FTQVCGLRTVMP---SNPYDAKGLLIASIE--CDDPVIFLEPKR 176 (338)
T ss_dssp HTTSTTCEEECC---CSHHHHHHHHHHHHH--SSSCEEEEEEGG
T ss_pred HhcCCCCEEEee---CCHHHHHHHHHHHHh--cCCcEEEEEchH
Confidence 4444 8888877 788888888888877 378999865543
No 90
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=69.52 E-value=4.5 Score=43.27 Aligned_cols=102 Identities=18% Similarity=0.153 Sum_probs=56.9
Q ss_pred HHHHHHHHhcC----C-CeeEEEec--HhhHHHHHHHHHHHHhcCCCCEEEEEeCCCccCCCCCC--cCcHHHHH-HhcC
Q 004946 455 AVTFSAGLACG----G-LKPFCIIP--SAFLQRAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPT--QCGAFDIT-FMSC 524 (722)
Q Consensus 455 av~~AaGlA~~----G-~~p~~~t~--~~Fl~ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~T--H~~~~d~a-~~~~ 524 (722)
.+..|.|+|++ | -+++++++ ..|.+-.+-+-++.++..++||++++.+.++ |...++ .....|+. -.-.
T Consensus 145 ~lp~A~G~A~A~~~~~~~~~vv~~~GDGa~~~G~~~Ealn~A~~~~lpvi~vv~NN~~-g~~t~~~~~~~~~~~~~ra~g 223 (365)
T 2ozl_A 145 QVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRY-GMGTSVERAAASTDYYKRGDF 223 (365)
T ss_dssp HHHHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHHHHHHHHHHHTTCCEEEEEEECSE-ETTEEHHHHCSCCCGGGTTTT
T ss_pred hhHHHHHHHHHHHhcCCCceEEEEECchhhhccHHHHHHHHHHHHCcCEEEEEECCCc-ccCCCcccccCCCCHHHHhCC
Confidence 44566666654 2 34444443 3343322223457888999999999876654 211110 01111111 1123
Q ss_pred CCCcEEEeeCCHHHHHHHHHHHhh---hCCCCEEEEe
Q 004946 525 LPNMIVMAPSDEDELVDMVATVAS---IDDRPVCFRY 558 (722)
Q Consensus 525 iP~l~V~~Psd~~E~~~~l~~a~~---~~~~Pv~ir~ 558 (722)
+|++.| .=.|+.++...++.|++ ..++|++|-.
T Consensus 224 ~p~~~V-dG~D~~av~~a~~~A~~~~r~~~gP~lIe~ 259 (365)
T 2ozl_A 224 IPGLRV-DGMDILCVREATRFAAAYCRSGKGPILMEL 259 (365)
T ss_dssp SCEEEE-ETTCHHHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCEEEE-eCCCHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 565543 44479999999998875 2578999854
No 91
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=68.48 E-value=11 Score=32.72 Aligned_cols=76 Identities=13% Similarity=0.015 Sum_probs=50.3
Q ss_pred CCcEEEEEec----hhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHh-cCCCeEEEEcCCCCCChHHHHHHHH
Q 004946 588 GKDVALLGYG----AMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELC-QNHTFLITVEEGSIGGFGSHVSHFI 662 (722)
Q Consensus 588 G~dv~lva~G----s~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~-~~~~~vvvvEe~~~gG~gs~v~~~l 662 (722)
..+|+|++-| +....|..|.+.|++.|+..+.+|+.. .|--.+.+.+.. ..+=..|+|....+||+... ..+
T Consensus 15 ~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~-d~~~~~~l~~~~g~~tvP~ifi~g~~iGG~d~l--~~l 91 (111)
T 3zyw_A 15 AAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFS-DEEVRQGLKAYSSWPTYPQLYVSGELIGGLDII--KEL 91 (111)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGG-CHHHHHHHHHHHTCCSSCEEEETTEEEECHHHH--HHH
T ss_pred cCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcC-CHHHHHHHHHHHCCCCCCEEEECCEEEecHHHH--HHH
Confidence 4578888877 466899999999999999999999874 121122333332 23346778877668998643 234
Q ss_pred HhcC
Q 004946 663 ALDG 666 (722)
Q Consensus 663 ~~~~ 666 (722)
.++|
T Consensus 92 ~~~G 95 (111)
T 3zyw_A 92 EASE 95 (111)
T ss_dssp HHTT
T ss_pred HHCC
Confidence 4444
No 92
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=68.09 E-value=11 Score=43.38 Aligned_cols=87 Identities=15% Similarity=0.145 Sum_probs=53.6
Q ss_pred eeEEEecHhh-HH--HHHHHHHHHHhcCCCC-EEEEEeCCCccCCCCCCcCc-HHHH-HHhcCCCCcEEEeeC---CHHH
Q 004946 468 KPFCIIPSAF-LQ--RAYDQVVNDVDQQRLP-VRFVITSAGLVGSDGPTQCG-AFDI-TFMSCLPNMIVMAPS---DEDE 538 (722)
Q Consensus 468 ~p~~~t~~~F-l~--ra~dqi~~~~a~~~lp-Vv~v~~~~G~~G~dG~TH~~-~~d~-a~~~~iP~l~V~~Ps---d~~E 538 (722)
+.++++..+. ++ ..++ -++.++..++| ++++++..++ +-++++... ..|+ ..+.. -||.++.+. |..+
T Consensus 151 ~~v~~~~GDG~~~eG~~~E-al~~A~~~~L~~li~i~~nN~~-~i~~~~~~~~~~d~~~~~~a-~G~~~~~~vdG~d~~~ 227 (651)
T 2e6k_A 151 HYTYVLASDGDLMEGVSGE-AASLAGHWGLSKLIVFWDDNRI-SIDGPTDLAFTEDVLARYRA-YGWQTLRVEDVNDLEA 227 (651)
T ss_dssp CCEEEEECHHHHHSHHHHH-HHHHHHHTTCTTEEEEEEECCE-ETTEEGGGTCCSCHHHHHHH-TTCEEEEESCTTCHHH
T ss_pred CEEEEEEChhhhchhHHHH-HHHHHHHcCCCeEEEEEECCCc-ccccccccccCccHHHHHHh-CCCeEEEEeCCCCHHH
Confidence 3445544333 33 3453 45788889998 8888776664 223333211 1233 34444 388887443 7999
Q ss_pred HHHHHHHHhhhCCCCEEEEe
Q 004946 539 LVDMVATVASIDDRPVCFRY 558 (722)
Q Consensus 539 ~~~~l~~a~~~~~~Pv~ir~ 558 (722)
+...++.|.+ .++|++|..
T Consensus 228 l~~al~~a~~-~~~P~lI~~ 246 (651)
T 2e6k_A 228 LRKAIKLAKL-DERPTLIAV 246 (651)
T ss_dssp HHHHHHHHHH-SSSCEEEEE
T ss_pred HHHHHHHHHH-CCCCEEEEE
Confidence 9999999876 688998865
No 93
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=66.89 E-value=12 Score=31.42 Aligned_cols=72 Identities=11% Similarity=0.117 Sum_probs=48.7
Q ss_pred CcEEEEEechhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhc-----CCCeEEEEcCCC-CCChH-HHHHHH
Q 004946 589 KDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQ-----NHTFLITVEEGS-IGGFG-SHVSHF 661 (722)
Q Consensus 589 ~dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~-----~~~~vvvvEe~~-~gG~g-s~v~~~ 661 (722)
+.|+|.+. +....|..|.+.|++.||..+.+|+.. |.+...++.+ .+=.+|++.++. ..|+. .+|.+.
T Consensus 4 a~I~vYs~-~~Cp~C~~aK~~L~~~gi~y~~idi~~----d~~~~~~~~~~~~G~~tVP~I~i~Dg~~l~~~~~~el~~~ 78 (92)
T 2lqo_A 4 AALTIYTT-SWCGYCLRLKTALTANRIAYDEVDIEH----NRAAAEFVGSVNGGNRTVPTVKFADGSTLTNPSADEVKAK 78 (92)
T ss_dssp SCEEEEEC-TTCSSHHHHHHHHHHTTCCCEEEETTT----CHHHHHHHHHHSSSSSCSCEEEETTSCEEESCCHHHHHHH
T ss_pred CcEEEEcC-CCCHhHHHHHHHHHhcCCceEEEEcCC----CHHHHHHHHHHcCCCCEeCEEEEeCCEEEeCCCHHHHHHH
Confidence 35777665 556789999999999999999999874 4444333322 223678887765 45653 566666
Q ss_pred HHhc
Q 004946 662 IALD 665 (722)
Q Consensus 662 l~~~ 665 (722)
|.+-
T Consensus 79 L~el 82 (92)
T 2lqo_A 79 LVKI 82 (92)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7654
No 94
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=66.36 E-value=8.9 Score=32.96 Aligned_cols=68 Identities=15% Similarity=0.108 Sum_probs=46.4
Q ss_pred CCcEEEEEec----hhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhc-CCCeEEEEcCCCCCChHH
Q 004946 588 GKDVALLGYG----AMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQ-NHTFLITVEEGSIGGFGS 656 (722)
Q Consensus 588 G~dv~lva~G----s~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~-~~~~vvvvEe~~~gG~gs 656 (722)
..+|+|.+.| .....|..|.+.|++.|+....+|+.. .|--.+.+.+... .+=.+|+++....||+..
T Consensus 14 ~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~-~~~~~~~l~~~~g~~~vP~ifi~g~~igG~d~ 86 (109)
T 1wik_A 14 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILE-DEEVRQGLKTFSNWPTYPQLYVRGDLVGGLDI 86 (109)
T ss_dssp TSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSS-CHHHHHHHHHHHSCCSSCEEECSSSEEECHHH
T ss_pred cCCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCC-CHHHHHHHHHHhCCCCCCEEEECCEEEcCHHH
Confidence 3579999988 677899999999999999999999875 1211223333332 222466676666798853
No 95
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=65.89 E-value=18 Score=42.10 Aligned_cols=88 Identities=13% Similarity=0.098 Sum_probs=54.0
Q ss_pred eEEEecHhh-HH--HHHHHHHHHHhcCCCC-EEEEEeCCCccCCCCCCcC-cHHHH-HHhcCCCCcEEEee---CCHHHH
Q 004946 469 PFCIIPSAF-LQ--RAYDQVVNDVDQQRLP-VRFVITSAGLVGSDGPTQC-GAFDI-TFMSCLPNMIVMAP---SDEDEL 539 (722)
Q Consensus 469 p~~~t~~~F-l~--ra~dqi~~~~a~~~lp-Vv~v~~~~G~~G~dG~TH~-~~~d~-a~~~~iP~l~V~~P---sd~~E~ 539 (722)
.++++..+. ++ ..++ -++.++..+|| ++++++..++ +-+|++.. ..+|+ ..+.+. ||.++.. .|..++
T Consensus 170 ~v~~~~GDG~l~eG~~~E-Al~~A~~~~L~nli~i~d~N~~-si~~~~~~~~~~~~~~~~~a~-G~~~~~V~DG~D~~al 246 (700)
T 3rim_A 170 YIYVIASDGDIEEGVTSE-ASSLAAVQQLGNLIVFYDRNQI-SIEDDTNIALCEDTAARYRAY-GWHVQEVEGGENVVGI 246 (700)
T ss_dssp CEEEEEEHHHHHSHHHHH-HHHHHHHTTCTTEEEEEEECSE-ETTEEGGGTCCCCHHHHHHHH-TCEEEEEECTTCHHHH
T ss_pred eEEEEECCcccccChHHH-HHHHHHHcCCCcEEEEEECCCc-ccccchhhccchhHHHHHHHc-CCeEEEECCCCCHHHH
Confidence 344444433 33 2343 45788899997 8888877665 22343321 11222 233443 7887765 488999
Q ss_pred HHHHHHHhhhCCCCEEEEec
Q 004946 540 VDMVATVASIDDRPVCFRYP 559 (722)
Q Consensus 540 ~~~l~~a~~~~~~Pv~ir~~ 559 (722)
...+..|....++|++|...
T Consensus 247 ~~Al~~A~~~~~~P~lI~~~ 266 (700)
T 3rim_A 247 EEAIANAQAVTDRPSFIALR 266 (700)
T ss_dssp HHHHHHHHHCCSSCEEEEEE
T ss_pred HHHHHHHHHcCCCCEEEEEE
Confidence 99999886546889999654
No 96
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=65.80 E-value=21 Score=41.50 Aligned_cols=88 Identities=13% Similarity=0.143 Sum_probs=55.1
Q ss_pred eeEEEec--HhhHH-HHHHHHHHHHhcCCCC-EEEEEeCCCccCCCCCCcCc-HHHH-HHhcCCCCcEEEee---CCHHH
Q 004946 468 KPFCIIP--SAFLQ-RAYDQVVNDVDQQRLP-VRFVITSAGLVGSDGPTQCG-AFDI-TFMSCLPNMIVMAP---SDEDE 538 (722)
Q Consensus 468 ~p~~~t~--~~Fl~-ra~dqi~~~~a~~~lp-Vv~v~~~~G~~G~dG~TH~~-~~d~-a~~~~iP~l~V~~P---sd~~E 538 (722)
+.++++. ..|.. ..+ +-++.++..++| ++++++..++ +-+|++... ..|+ ..+++. ||.++.| .|..+
T Consensus 188 ~~vv~i~GDG~l~eG~~~-Eal~~A~~~~L~~livI~dnN~~-~i~~~~~~~~~~d~~~~~~a~-G~~~~~~vdG~d~~~ 264 (711)
T 3uk1_A 188 HHTYVFLGDGCLMEGISH-EACSLAGTLKLNKLIALYDDNGI-SIDGDVVNWFHDDTPKRFEAY-GWNVIPNVNGHDVDA 264 (711)
T ss_dssp CCEEEEECHHHHHSHHHH-HHHHHHHHTTCTTEEEEEEECSE-ETTEEGGGTCCCCHHHHHHHT-TCEEEEEEETTCHHH
T ss_pred CeEEEEECCcchhhccHH-HHHHHHHHhCCCcEEEEEECCCc-ccccchhhhcCCCHHHHHHHc-CCcEEEEeCCCCHHH
Confidence 3455554 34432 344 345788899998 7777777664 333444321 1222 344444 7887775 48899
Q ss_pred HHHHHHHHhhhCCCCEEEEec
Q 004946 539 LVDMVATVASIDDRPVCFRYP 559 (722)
Q Consensus 539 ~~~~l~~a~~~~~~Pv~ir~~ 559 (722)
+...++.|.+ .++|++|...
T Consensus 265 l~~Al~~A~~-~~~P~lI~v~ 284 (711)
T 3uk1_A 265 IDAAIAKAKR-SDKPSLICCK 284 (711)
T ss_dssp HHHHHHHHTT-CSSCEEEEEE
T ss_pred HHHHHHHHHh-CCCCEEEEEc
Confidence 9999999865 6889998653
No 97
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=65.30 E-value=19 Score=41.29 Aligned_cols=99 Identities=13% Similarity=0.180 Sum_probs=59.8
Q ss_pred HHHHHHHHhcCC------------CeeEEEecHhh-HH--HHHHHHHHHHhcCCCC-EEEEEeCCCccCCCCCCcCc-HH
Q 004946 455 AVTFSAGLACGG------------LKPFCIIPSAF-LQ--RAYDQVVNDVDQQRLP-VRFVITSAGLVGSDGPTQCG-AF 517 (722)
Q Consensus 455 av~~AaGlA~~G------------~~p~~~t~~~F-l~--ra~dqi~~~~a~~~lp-Vv~v~~~~G~~G~dG~TH~~-~~ 517 (722)
.++.|.|+|++- -+.++++..+. ++ .+++ -++.++..++| ++++.+..++ +-+|++... ..
T Consensus 119 gl~~AvG~AlA~~~~~~~~n~~~~d~~v~~v~GDG~~~eG~~~E-al~~A~~~~L~~livi~nnN~~-~i~~~~~~~~~~ 196 (632)
T 3l84_A 119 GVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGISYE-ACSLAGLHKLDNFILIYDSNNI-SIEGDVGLAFNE 196 (632)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTCCCCEEEEEEHHHHHSHHHHH-HHHHHHHTTCTTEEEEEEECSE-ETTEEGGGTCCC
T ss_pred HHHHHHHHHHHHHhhccccccCCCCCeEEEEECCcchhhccHHH-HHHHHHHcCCCcEEEEEECCCc-ccccchhhhcCh
Confidence 355666666541 23455554333 33 3453 45788889998 7777776664 323333221 12
Q ss_pred HH-HHhcCCCCcEEEeeC---CHHHHHHHHHHHhhhCCCCEEEEe
Q 004946 518 DI-TFMSCLPNMIVMAPS---DEDELVDMVATVASIDDRPVCFRY 558 (722)
Q Consensus 518 d~-a~~~~iP~l~V~~Ps---d~~E~~~~l~~a~~~~~~Pv~ir~ 558 (722)
|+ ..+.+. ||.++ +. |..++...++.|.+ .++|++|..
T Consensus 197 d~~~~~~a~-G~~~~-~vdGhd~~~l~~al~~A~~-~~~P~lI~v 238 (632)
T 3l84_A 197 NVKMRFEAQ-GFEVL-SINGHDYEEINKALEQAKK-STKPCLIIA 238 (632)
T ss_dssp CHHHHHHHT-TCEEE-EEETTCHHHHHHHHHHHHT-CSSCEEEEE
T ss_pred hHHHHHHHc-CCeEE-EEeeCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 22 344554 88887 44 78999999999865 689999864
No 98
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=63.66 E-value=15 Score=42.47 Aligned_cols=88 Identities=14% Similarity=0.129 Sum_probs=53.4
Q ss_pred eEEEecHhh-HH--HHHHHHHHHHhcCCC-CEEEEEeCCCccCCCCCCcCc-HHHH-HHhcCCCCcEEEeeC----CHHH
Q 004946 469 PFCIIPSAF-LQ--RAYDQVVNDVDQQRL-PVRFVITSAGLVGSDGPTQCG-AFDI-TFMSCLPNMIVMAPS----DEDE 538 (722)
Q Consensus 469 p~~~t~~~F-l~--ra~dqi~~~~a~~~l-pVv~v~~~~G~~G~dG~TH~~-~~d~-a~~~~iP~l~V~~Ps----d~~E 538 (722)
.++++..+. ++ ..++ -++.++..+| |++++++..++ +-++++... ..|+ ..+... ||.++.+. |..+
T Consensus 161 ~v~~i~GDG~~~eG~~~E-al~~A~~~~L~~li~i~~nN~~-~i~~~~~~~~~~d~~~~~~a~-G~~~~~~vdG~~d~~~ 237 (675)
T 1itz_A 161 YTYVILGDGCQMEGIANE-ACSLAGHWGLGKLIAFYDDNHI-SIDGDTEIAFTEDVSTRFEAL-GWHTIWVKNGNTGYDD 237 (675)
T ss_dssp CEEEEECHHHHHSHHHHH-HHHHHHHTTCTTEEEEEEECSE-ETTEEGGGTCCSCHHHHHHHT-TCEEEEESCTTTCHHH
T ss_pred EEEEEECHhHhchhHHHH-HHHHHHHhCCCcEEEEEECCCc-cCCCChhhhcChhHHHHHHhC-CCEEEEEecCCCCHHH
Confidence 444444333 33 3453 4578888998 58888877664 223333211 2232 344554 88887443 7889
Q ss_pred HHHHHHHHhhhCCCCEEEEec
Q 004946 539 LVDMVATVASIDDRPVCFRYP 559 (722)
Q Consensus 539 ~~~~l~~a~~~~~~Pv~ir~~ 559 (722)
+...++.|.+..++|++|...
T Consensus 238 l~~al~~a~~~~~~P~lI~~~ 258 (675)
T 1itz_A 238 IRAAIKEAKAVTDKPTLIKVT 258 (675)
T ss_dssp HHHHHHHHHHCCSSCEEEEEE
T ss_pred HHHHHHHHHHCCCCeEEEEEe
Confidence 999999887545789988653
No 99
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=62.23 E-value=37 Score=38.72 Aligned_cols=103 Identities=15% Similarity=0.226 Sum_probs=65.8
Q ss_pred chHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHH-HHHhhhcCCCEEEEEECCCCCCCCCccCCCCcchhhhhhh
Q 004946 196 NSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEA-MSNAGYLDSNMIVILNDSRHSLHPKIEESPKTSINALSST 274 (722)
Q Consensus 196 ~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EA-ln~A~~~~~plivIv~dN~~~s~~t~~~~~~~~~g~l~~~ 274 (722)
+.+++|.|+|++ | -++++++.++... .+++- ++.++..+.|+++++..-+... . -|....
T Consensus 372 ~~~~~a~G~A~~----G-~rp~~~~~~~F~~---~a~dqi~~~~a~~~~pvv~~~~~~g~~g----~------~G~tH~- 432 (621)
T 2o1s_A 372 HAVTFAAGLAIG----G-YKPIVAIYSTFLQ---RAYDQVLHDVAIQKLPVLFAIDRAGIVG----A------DGQTHQ- 432 (621)
T ss_dssp HHHHHHHHHHHT----T-CEEEEEEETTGGG---GGHHHHHHTTTTTTCCCEEEEESCBCCC----T------TCGGGC-
T ss_pred HHHHHHHHHHHC----C-CEEEEEehHhHHH---HHHHHHHHHHHhcCCCEEEEEECCccCC----C------CCCccC-
Confidence 456677787775 3 5778888888642 66755 6778888999999986655421 0 111000
Q ss_pred hhhhhhhhHHHHHHHHHhhhhhhcCccHHHHHHHHHHHhhcccCCChhhhHhhc-CceEEeecCCCCHHHHHHHHHHHHh
Q 004946 275 LSRIQSSKSFRQLREVAKGMTKRIGRGMHEWAAKVDEYARGMIGPQGSTLFEEL-GLYYIGPVDGHNIEDLISVLQEVAS 353 (722)
Q Consensus 275 l~~~~~~~~~~~~r~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfea~-G~~~~~~vdGhd~~~l~~al~~a~~ 353 (722)
+..+ -.++..+ |+.++.| .|..++...++.+.+
T Consensus 433 --------------------------~~~d-----------------~~~~~~iP~l~v~~P---~d~~e~~~~l~~a~~ 466 (621)
T 2o1s_A 433 --------------------------GAFD-----------------LSYLRCIPEMVIMTP---SDENECRQMLYTGYH 466 (621)
T ss_dssp --------------------------BCSH-----------------HHHTTTSTTCEEECC---SSHHHHHHHHHHHHH
T ss_pred --------------------------chHH-----------------HHHHhcCCCCEEEec---CCHHHHHHHHHHHHH
Confidence 0000 1233444 7888877 788888888888877
Q ss_pred cCCCCCEEEEE
Q 004946 354 LGSMGPVLVHV 364 (722)
Q Consensus 354 ~~~~~P~lI~v 364 (722)
. .++|++|-.
T Consensus 467 ~-~~~Pv~i~~ 476 (621)
T 2o1s_A 467 Y-NDGPSAVRY 476 (621)
T ss_dssp C-CSSCEEEEC
T ss_pred c-CCCCEEEEe
Confidence 3 378998764
No 100
>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A
Probab=61.05 E-value=22 Score=28.90 Aligned_cols=65 Identities=22% Similarity=0.246 Sum_probs=41.9
Q ss_pred EEEEEech----hhHHHHHHHHHHHhcCCcEEEeecCcccc-chHH---HHHHHhcC------CCeEEEEcCCC-CCChH
Q 004946 591 VALLGYGA----MVQNCLKARALLSKLGIDVTVADARFCKP-LDIK---LVRELCQN------HTFLITVEEGS-IGGFG 655 (722)
Q Consensus 591 v~lva~Gs----~v~~aleAa~~L~~~Gi~v~Vidl~~lkP-ld~e---~i~~~~~~------~~~vvvvEe~~-~gG~g 655 (722)
|+|.+. + ....|.+|.+.|++.|++.+.+|+..... -|.+ .+.+.... +=..|+++++. .||+.
T Consensus 2 v~iY~~-~~~~~~Cp~C~~ak~~L~~~gi~y~~idI~~~~~~~~~~~~~~l~~~~g~~~~~~~tvP~v~i~~g~~igG~d 80 (87)
T 1aba_A 2 FKVYGY-DSNIHKCGPCDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFAPDGSHIGGFD 80 (87)
T ss_dssp EEEEEC-CTTTSCCHHHHHHHHHHHHTTCCEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTTCCSCEEECTTSCEEESHH
T ss_pred EEEEEe-CCCCCcCccHHHHHHHHHHcCCCEEEEEeeccccccCHHHHHHHHHHhCCCCCCCCccCEEEEECCEEEeCHH
Confidence 455544 4 56789999999999999999999974321 1333 34333322 23577774444 78886
Q ss_pred H
Q 004946 656 S 656 (722)
Q Consensus 656 s 656 (722)
.
T Consensus 81 ~ 81 (87)
T 1aba_A 81 Q 81 (87)
T ss_dssp H
T ss_pred H
Confidence 4
No 101
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=60.67 E-value=23 Score=40.53 Aligned_cols=100 Identities=11% Similarity=0.097 Sum_probs=57.2
Q ss_pred HHHHHHHHhcC-----CCeeEEEec--HhhHH-HHHHHHHHHHhcCCCCEEEEEeCCCccCCCCCCcCcHH---------
Q 004946 455 AVTFSAGLACG-----GLKPFCIIP--SAFLQ-RAYDQVVNDVDQQRLPVRFVITSAGLVGSDGPTQCGAF--------- 517 (722)
Q Consensus 455 av~~AaGlA~~-----G~~p~~~t~--~~Fl~-ra~dqi~~~~a~~~lpVv~v~~~~G~~G~dG~TH~~~~--------- 517 (722)
.++.|.|+|++ .-++++++. ..|.. ..++ -++.++..++|+++++...++ +-++++.....
T Consensus 128 gl~~AvG~AlA~k~~~~~~~Vv~v~GDG~~~~G~~~E-aL~~A~~~~~pli~IvnnN~~-~i~~~~~~~~~~~~~l~~~~ 205 (629)
T 2o1x_A 128 SLTNALGMALARDAQGKDFHVAAVIGDGSLTGGMALA-ALNTIGDMGRKMLIVLNDNEM-SISENVGAMNKFMRGLQVQK 205 (629)
T ss_dssp HHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHH-HHHHHHHHCCSEEEEEEECSB-SSSBCCSSHHHHC-------
T ss_pred cHhHHHHHHHHHHHhCCCCeEEEEEchhhhhccHHHH-HHHHHHhhCCCEEEEEECCCC-CCCCChhHHHHHHHHHhhch
Confidence 34566666664 234455543 44432 3454 347778888999999876664 33333321000
Q ss_pred ----------------------------H-H---------HHhcCCCCcEEE---eeCCHHHHHHHHHHHhhhCCCCEEE
Q 004946 518 ----------------------------D-I---------TFMSCLPNMIVM---APSDEDELVDMVATVASIDDRPVCF 556 (722)
Q Consensus 518 ----------------------------d-~---------a~~~~iP~l~V~---~Psd~~E~~~~l~~a~~~~~~Pv~i 556 (722)
| + .++.. -|+..+ ...|..++...++.|.+ .++|++|
T Consensus 206 ~y~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~~~~p~~~~~~ea-~G~~~~g~vdG~d~~~l~~al~~A~~-~~~P~lI 283 (629)
T 2o1x_A 206 WFQEGEGAGKKAVEAVSKPLADFMSRAKNSTRHFFDPASVNPFAA-MGVRYVGPVDGHNVQELVWLLERLVD-LDGPTIL 283 (629)
T ss_dssp --------------------------------------CCCTTGG-GTCEEEEEEESSCHHHHHHHHHHHTT-SSSEEEE
T ss_pred hHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhhcCcccchHHHh-cCCeEEeeECCcCHHHHHHHHHHHHh-cCCCEEE
Confidence 1 1 11222 145444 34589999999999965 5789988
Q ss_pred Ee
Q 004946 557 RY 558 (722)
Q Consensus 557 r~ 558 (722)
..
T Consensus 284 ~v 285 (629)
T 2o1x_A 284 HI 285 (629)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 102
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=60.36 E-value=25 Score=37.01 Aligned_cols=32 Identities=13% Similarity=0.162 Sum_probs=25.0
Q ss_pred CceEEeecCCCCHHHHHHHHHHHHhcCCCCCEEEEEE
Q 004946 329 GLYYIGPVDGHNIEDLISVLQEVASLGSMGPVLVHVV 365 (722)
Q Consensus 329 G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~ 365 (722)
|+.++.| .|..+....++.+.+ .++|++|-..
T Consensus 159 ~l~V~~P---sd~~e~~~~l~~a~~--~~~Pv~i~~p 190 (342)
T 2bfd_B 159 GIKVVIP---RSPFQAKGLLLSCIE--DKNPCIFFEP 190 (342)
T ss_dssp TCEEECC---SSHHHHHHHHHHHHH--SSSCEEEEEE
T ss_pred CcEEEee---CCHHHHHHHHHHHHh--cCCcEEEEec
Confidence 7777777 788888888888877 3789998654
No 103
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=57.27 E-value=12 Score=31.13 Aligned_cols=66 Identities=11% Similarity=0.053 Sum_probs=42.8
Q ss_pred cEEEEEechhhHHH------HHHHHHHHhcCCcEEEeecCccccchHHHHHHHhc---CCCeEEEEcCCCCCChHHH
Q 004946 590 DVALLGYGAMVQNC------LKARALLSKLGIDVTVADARFCKPLDIKLVRELCQ---NHTFLITVEEGSIGGFGSH 657 (722)
Q Consensus 590 dv~lva~Gs~v~~a------leAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~---~~~~vvvvEe~~~gG~gs~ 657 (722)
+|+|.++ +....| ..|.+.|++.|+..+.+|+.. .|-..+.+.+... .+=+.|++++...||+..-
T Consensus 3 ~v~ly~~-~~C~~c~~~~~~~~ak~~L~~~~i~~~~~di~~-~~~~~~~l~~~~g~~~~~vP~ifi~g~~igG~d~l 77 (93)
T 1t1v_A 3 GLRVYST-SVTGSREIKSQQSEVTRILDGKRIQYQLVDISQ-DNALRDEMRTLAGNPKATPPQIVNGNHYCGDYELF 77 (93)
T ss_dssp CEEEEEC-SSCSCHHHHHHHHHHHHHHHHTTCCCEEEETTS-CHHHHHHHHHHTTCTTCCSCEEEETTEEEEEHHHH
T ss_pred CEEEEEc-CCCCCchhhHHHHHHHHHHHHCCCceEEEECCC-CHHHHHHHHHHhCCCCCCCCEEEECCEEEeCHHHH
Confidence 4666654 334455 889999999999999999974 2322333444432 1236778887778987643
No 104
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=57.07 E-value=27 Score=30.76 Aligned_cols=69 Identities=10% Similarity=0.043 Sum_probs=47.9
Q ss_pred CCcEEEEEech----hhHHHHHHHHHHHhcCCc-EEEeecCccccchHHHHHHHh-cCCCeEEEEcCCCCCChHHH
Q 004946 588 GKDVALLGYGA----MVQNCLKARALLSKLGID-VTVADARFCKPLDIKLVRELC-QNHTFLITVEEGSIGGFGSH 657 (722)
Q Consensus 588 G~dv~lva~Gs----~v~~aleAa~~L~~~Gi~-v~Vidl~~lkPld~e~i~~~~-~~~~~vvvvEe~~~gG~gs~ 657 (722)
..+|+|++.++ ....|..|.+.|++.|+. .+.+|+.. .|--.+.+.+.. ..+=..|+|....+||+...
T Consensus 19 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~-d~~~~~~l~~~tg~~tvP~vfI~g~~IGG~d~l 93 (118)
T 2wem_A 19 KDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLD-DPELRQGIKDYSNWPTIPQVYLNGEFVGGCDIL 93 (118)
T ss_dssp HSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSS-CHHHHHHHHHHHTCCSSCEEEETTEEEESHHHH
T ss_pred cCCEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCC-CHHHHHHHHHHhCCCCcCeEEECCEEEeChHHH
Confidence 45799999984 788999999999999995 99999863 111112233322 23346778887778998643
No 105
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=55.51 E-value=24 Score=31.08 Aligned_cols=66 Identities=21% Similarity=0.218 Sum_probs=46.9
Q ss_pred CCcEEEEEech----hhHHHHHHHHHHHhcCCc---EEEeecCccccchHHH---HHHHh-cCCCeEEEEcCCCCCChHH
Q 004946 588 GKDVALLGYGA----MVQNCLKARALLSKLGID---VTVADARFCKPLDIKL---VRELC-QNHTFLITVEEGSIGGFGS 656 (722)
Q Consensus 588 G~dv~lva~Gs----~v~~aleAa~~L~~~Gi~---v~Vidl~~lkPld~e~---i~~~~-~~~~~vvvvEe~~~gG~gs 656 (722)
..+|+|++.|+ ....|..|.+.|++.|+. .+.+|+.. |.+. +.+.. ..+=..|+|....+||+..
T Consensus 15 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~----~~~~~~~l~~~sg~~tvP~vfI~g~~iGG~d~ 90 (121)
T 3gx8_A 15 SAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLE----DPELREGIKEFSEWPTIPQLYVNKEFIGGCDV 90 (121)
T ss_dssp SCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTT----CHHHHHHHHHHHTCCSSCEEEETTEEEESHHH
T ss_pred cCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecC----CHHHHHHHHHHhCCCCCCeEEECCEEEecHHH
Confidence 45799999984 788999999999999998 88888753 3332 22222 2333677887766899864
Q ss_pred H
Q 004946 657 H 657 (722)
Q Consensus 657 ~ 657 (722)
.
T Consensus 91 l 91 (121)
T 3gx8_A 91 I 91 (121)
T ss_dssp H
T ss_pred H
Confidence 3
No 106
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=54.55 E-value=52 Score=34.15 Aligned_cols=51 Identities=6% Similarity=0.046 Sum_probs=33.9
Q ss_pred cchHHHHHHHHHHHHHcCCCCeEEEE-ecCCCcccchHHHHHHH-hhh--------cCCCEEEEEECCCC
Q 004946 195 CNSVSAGLGMAVARDIKGKRECIVTV-ISNGTTMAGQAYEAMSN-AGY--------LDSNMIVILNDSRH 254 (722)
Q Consensus 195 G~~ls~A~G~A~A~~l~~~~~~Vv~v-iGDGa~~~G~~~EAln~-A~~--------~~~plivIv~dN~~ 254 (722)
-+.+++|.|+|++ | -++++++ .+++.. .+++.+.+ ++. .+.|+++++. .+.
T Consensus 60 ~~~v~~a~G~A~~----G-~rp~~~~t~~~F~~---~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~g~ 120 (324)
T 1w85_B 60 SGIGGLAIGLALQ----G-FRPVPEIQFFGFVY---EVMDSICGQMARIRYRTGGRYHMPITIRSP-FGG 120 (324)
T ss_dssp HHHHHHHHHHHHT----T-CEEEEBCSSGGGGG---GTHHHHHTTGGGHHHHTTTSSCCCCEEEEE-ECS
T ss_pred HHHHHHHHHHHhC----C-CEEEEEecchhHHH---HHHHHHHHHHHHHhhhccCCCcCCEEEEEe-ccC
Confidence 3567778888875 3 3455544 888762 78888864 443 6799998876 443
No 107
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=53.97 E-value=37 Score=38.76 Aligned_cols=97 Identities=10% Similarity=0.207 Sum_probs=55.2
Q ss_pred HHHHHHHHhcC-------CCeeEEEe-cHhhHH-HHHHHHHHHHhcCCCC-EEEEEeCCCccCCCCCCcC--cHHHH-HH
Q 004946 455 AVTFSAGLACG-------GLKPFCII-PSAFLQ-RAYDQVVNDVDQQRLP-VRFVITSAGLVGSDGPTQC--GAFDI-TF 521 (722)
Q Consensus 455 av~~AaGlA~~-------G~~p~~~t-~~~Fl~-ra~dqi~~~~a~~~lp-Vv~v~~~~G~~G~dG~TH~--~~~d~-a~ 521 (722)
.++.|.|+|++ ..+++|-+ -..|.. ..+ +-++.++..++| ++++.+..++ +-++++.. ...|+ ..
T Consensus 126 gl~~A~G~AlA~~~~~~~~~~vv~v~GDG~~~eG~~~-Eal~~A~~~~l~~livi~nnN~~-~i~~~~~~~~~~~~~~~~ 203 (616)
T 3mos_A 126 GLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGSVW-EAMAFASIYKLDNLVAILDINRL-GQSDPAPLQHQMDIYQKR 203 (616)
T ss_dssp HHHHHHHHHHHHHHTSCCSCCEEEEEETGGGGSHHHH-HHHHHHHHTTCTTEEEEEEECSB-CSSSBCTTTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHhCCCCCEEEEEECccccccCcHH-HHHHHHHHcCCCcEEEEEECCCC-CCcCCcccccChHHHHHH
Confidence 35666666664 23444444 344432 344 345788889998 5556665554 33444432 23343 34
Q ss_pred hcCCCCcEEEeeC---CHHHHHHHHHHHhhhCCCCEEEEe
Q 004946 522 MSCLPNMIVMAPS---DEDELVDMVATVASIDDRPVCFRY 558 (722)
Q Consensus 522 ~~~iP~l~V~~Ps---d~~E~~~~l~~a~~~~~~Pv~ir~ 558 (722)
+..+ ||.++ +. |..++...++.+ .++|++|..
T Consensus 204 ~~a~-G~~~~-~VdG~d~~~l~~al~~~---~~~P~lI~v 238 (616)
T 3mos_A 204 CEAF-GWHAI-IVDGHSVEELCKAFGQA---KHQPTAIIA 238 (616)
T ss_dssp HHHT-TCEEE-EEETTCHHHHHHHHHSC---CSSCEEEEE
T ss_pred HHHc-CCeEE-EEcCCCHHHHHHHHHhc---CCCCEEEEE
Confidence 4544 78776 44 677777777544 478999854
No 108
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=52.59 E-value=49 Score=35.18 Aligned_cols=51 Identities=16% Similarity=0.178 Sum_probs=32.3
Q ss_pred cchHHHHHHHHHHHHHcCCCCeEEEE-ecCCCcccchHHHHHHH-hhhc--------CCCEEEEEECCC
Q 004946 195 CNSVSAGLGMAVARDIKGKRECIVTV-ISNGTTMAGQAYEAMSN-AGYL--------DSNMIVILNDSR 253 (722)
Q Consensus 195 G~~ls~A~G~A~A~~l~~~~~~Vv~v-iGDGa~~~G~~~EAln~-A~~~--------~~plivIv~dN~ 253 (722)
-+.+++|.|+|++ | -++++++ .+|... .+++.+.+ ++.. ++|+++++..-+
T Consensus 108 ~~~v~~a~G~A~~----G-~rpv~~~tf~~Fl~---~a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~gg 168 (369)
T 1ik6_A 108 GGILGFAMGMAMA----G-LKPVAEIQFVDFIW---LGADELLNHIAKLRYRSGGNYKAPLVVRTPVGS 168 (369)
T ss_dssp HHHHHHHHHHHHT----T-CEEEEECCCC-------CCHHHHHHHHHHHHC------CCCCEEEEEECC
T ss_pred HHHHHHHHHHHHC----C-CeeEEEecchhHHH---HHHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCC
Confidence 3467778888875 3 3556654 888762 67888765 5544 899999886544
No 109
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=50.91 E-value=86 Score=32.80 Aligned_cols=51 Identities=18% Similarity=0.113 Sum_probs=35.7
Q ss_pred cchHHHHHHHHHHHHHcCCCCeEEEE-ecCCCcccchHHHHHHHhhh---------cCCCEEEEEECCCC
Q 004946 195 CNSVSAGLGMAVARDIKGKRECIVTV-ISNGTTMAGQAYEAMSNAGY---------LDSNMIVILNDSRH 254 (722)
Q Consensus 195 G~~ls~A~G~A~A~~l~~~~~~Vv~v-iGDGa~~~G~~~EAln~A~~---------~~~plivIv~dN~~ 254 (722)
-+.+++|.|+|++ | -++++++ .+|... .+++.+.+.+. .++|+++++.. +.
T Consensus 72 ~~~v~~a~G~A~~----G-~rp~~~~~f~~F~~---~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~-G~ 132 (341)
T 2ozl_B 72 MGFAGIAVGAAMA----G-LRPICEFMTFNFSM---QAIDQVINSAAKTYYMSGGLQPVPIVFRGPN-GA 132 (341)
T ss_dssp HHHHHHHHHHHHT----T-CEEEEECSSGGGGG---GGHHHHHTTTTTHHHHTTSSCCCCCEEEEEC-SC
T ss_pred HHHHHHHHHHHHC----C-CEEEEEeccHHHHH---HHHHHHHHHHHHHHhhccccCCCCEEEEEcC-cC
Confidence 3467778888875 3 3555554 888872 78888876543 67999999884 64
No 110
>1jl3_A Arsenate reductase; alpha-beta fold, PTP-loop, oxidoreductase; 1.60A {Bacillus subtilis} SCOP: c.44.1.1 PDB: 1z2d_A 1z2e_A 2ipa_B
Probab=48.72 E-value=14 Score=33.51 Aligned_cols=107 Identities=12% Similarity=0.093 Sum_probs=60.8
Q ss_pred cEEEEEechhhH-HHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcCCCeEEEEcCCCCCChHHHHHHHHHhcCCC
Q 004946 590 DVALLGYGAMVQ-NCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIALDGLL 668 (722)
Q Consensus 590 dv~lva~Gs~v~-~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~~~vvvvEe~~~gG~gs~v~~~l~~~~~~ 668 (722)
++.+-+-|+..+ .--.|.+.|++.||++.- ..-++++.+.+ ...+.||+++++. ..+... +
T Consensus 31 ~~~v~SAGt~~~~~~p~a~~~l~~~Gid~s~---~~sr~l~~~~~----~~~D~Ii~m~~~~---------~~~~p~-~- 92 (139)
T 1jl3_A 31 EWKVYSAGIEAHGLNPNAVKAMKEVGIDISN---QTSDIIDSDIL----NNADLVVTLCGDA---------ADKCPM-T- 92 (139)
T ss_dssp TEEEEEEESSCCCCCHHHHHHHHHTTCCCTT---CCCCBCCHHHH----TTCSEEEECSHHH---------HHHCCC-C-
T ss_pred CEEEEcCcCCCCCCCHHHHHHHHHcCCCccc---CccCcCCHHHh----hcCCEEEEeCchH---------HhhCCC-C-
Confidence 344555554432 111345667778887642 33456665543 4678999996642 111111 1
Q ss_pred CCCCceEEEecCCccccCCCHHHHHHHcCCCHHHHHHHHHHHhhcc
Q 004946 669 DSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGRT 714 (722)
Q Consensus 669 ~~~~~v~~ig~~d~f~~~g~~~~l~~~~gl~~~~I~~~i~~ll~~~ 714 (722)
.+........+||.|...|..++.++.|.-.-+.|.+++..++...
T Consensus 93 ~~~~~~~~~~i~DP~~~~g~~~e~~~~f~~~~~~I~~~i~~ll~~~ 138 (139)
T 1jl3_A 93 PPHVKREHWGFDDPARAQGTEEEKWAFFQRVRDEIGNRLKEFAETG 138 (139)
T ss_dssp CTTSEEEECCCCCGGGCCSCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCceEEeccCCCCcccCCChHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1223334557888775557776666666666677888888777643
No 111
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=47.23 E-value=1.1e+02 Score=31.58 Aligned_cols=47 Identities=17% Similarity=0.359 Sum_probs=32.6
Q ss_pred chHHHHHHHHHHHHHcCCCCeEEEE-ecCCCcccchHHHHHHH-hhh--------cCCCEEEEEE
Q 004946 196 NSVSAGLGMAVARDIKGKRECIVTV-ISNGTTMAGQAYEAMSN-AGY--------LDSNMIVILN 250 (722)
Q Consensus 196 ~~ls~A~G~A~A~~l~~~~~~Vv~v-iGDGa~~~G~~~EAln~-A~~--------~~~plivIv~ 250 (722)
+.+++|.|+|++ | -++++++ .++.. + .+++.+.+ ++. .+.|+++++.
T Consensus 62 ~~v~~a~G~A~~----G-~~p~~~~t~~~F~-~--~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~ 118 (324)
T 1umd_B 62 AIVGAALGMAAH----G-LRPVAEIQFADYI-F--PGFDQLVSQVAKLRYRSGGQFTAPLVVRMP 118 (324)
T ss_dssp HHHHHHHHHHHH----T-CEEEEECSSGGGC-G--GGHHHHHHTTTTHHHHTTTSSCCCCEEEEE
T ss_pred HHHHHHHHHHHC----C-CEEEEEeccHhHH-H--HHHHHHHHHHHHHHhhcCCCCcCCEEEEEc
Confidence 467778888876 3 3555554 88885 2 78888864 443 5799999886
No 112
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=44.48 E-value=38 Score=28.54 Aligned_cols=68 Identities=15% Similarity=0.075 Sum_probs=43.8
Q ss_pred CcEEEEEec----hhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhc-CCCeEEEEcCCCCCChHHH
Q 004946 589 KDVALLGYG----AMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQ-NHTFLITVEEGSIGGFGSH 657 (722)
Q Consensus 589 ~dv~lva~G----s~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~-~~~~vvvvEe~~~gG~gs~ 657 (722)
.+|+|.+.| +....|..|...|++.|+....+|+..- |--.+.+.+... .+=..|++.....||+...
T Consensus 17 ~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~-~~~~~~l~~~~g~~~vP~v~i~g~~igg~d~~ 89 (105)
T 2yan_A 17 ASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILED-EEVRQGLKAYSNWPTYPQLYVKGELVGGLDIV 89 (105)
T ss_dssp SSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGC-HHHHHHHHHHHTCCSSCEEEETTEEEECHHHH
T ss_pred CCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCC-HHHHHHHHHHHCCCCCCeEEECCEEEeChHHH
Confidence 357887776 5667899999999999999999998642 211122333332 2224566655457888643
No 113
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=43.96 E-value=39 Score=32.04 Aligned_cols=65 Identities=14% Similarity=0.018 Sum_probs=40.8
Q ss_pred hhHHHHHHHHH-HHhcCCcEEEeecCcccc----------chHHHHHHHhcCCCeEEEEcCCCCCChHHHHHHHHH
Q 004946 599 MVQNCLKARAL-LSKLGIDVTVADARFCKP----------LDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIA 663 (722)
Q Consensus 599 ~v~~aleAa~~-L~~~Gi~v~Vidl~~lkP----------ld~e~i~~~~~~~~~vvvvEe~~~gG~gs~v~~~l~ 663 (722)
.-..+..+++. |++.|.+++++|+.-+.. -+.+.+.+.+...+.||+.=.-+.+++...+..++.
T Consensus 18 t~~la~~i~~~~l~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~sP~y~~~~p~~lK~~ld 93 (197)
T 2vzf_A 18 TAKLAEYALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLIVATPIYKASYTGLLKAFLD 93 (197)
T ss_dssp HHHHHHHHHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEEccccCchhhcccccCcHHHHHHHHHHHHCCEEEEEeCccCCCCCHHHHHHHH
Confidence 44556666777 887899999999875421 133344455556666666655445666666666654
No 114
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=42.32 E-value=45 Score=33.27 Aligned_cols=64 Identities=22% Similarity=0.128 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhcCCcEEEeecCccccc--------hHHHHHHHhcCCCeEEEEcCCCCCChHHHHHHHHHh
Q 004946 601 QNCLKARALLSKLGIDVTVADARFCKPL--------DIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIAL 664 (722)
Q Consensus 601 ~~aleAa~~L~~~Gi~v~Vidl~~lkPl--------d~e~i~~~~~~~~~vvvvEe~~~gG~gs~v~~~l~~ 664 (722)
..+..+++.+++.|++++++|+.-+..+ +.+.+.+.+...+.||++=.-+.+++...+..++-.
T Consensus 52 ~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~~sP~Yn~sipa~LKn~iD~ 123 (247)
T 2q62_A 52 LLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWVSPERHGAMTGIMKAQIDW 123 (247)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEEEEECSSSSCCHHHHHHHHT
T ss_pred HHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEEEeCCCCCCccHHHHHHHHH
Confidence 4455567777778999999999875311 134455566667777766555556676666666643
No 115
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=41.87 E-value=75 Score=31.13 Aligned_cols=59 Identities=15% Similarity=-0.010 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcCCCeEEEEcCCCCCChHHHHHHH
Q 004946 601 QNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHF 661 (722)
Q Consensus 601 ~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~~~vvvvEe~~~gG~gs~v~~~ 661 (722)
..+.++++.|++.|.+++++|+.. .+|.+...+.+...+.||+.=.-+-+++...+..+
T Consensus 47 ~L~~~~~~~l~~~g~ev~~~dL~~--~~Dv~~~~~~l~~aD~iv~~~P~y~~~~p~~lK~~ 105 (218)
T 3rpe_A 47 TLTNVAADFLRESGHQVKITTVDQ--GYDIESEIENYLWADTIIYQMPAWWMGEPWILKKY 105 (218)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEGGG--CCCHHHHHHHHHHCSEEEEEEECBTTBCCHHHHHH
T ss_pred HHHHHHHHHHhhCCCEEEEEECCC--ccCHHHHHHHHHhCCEEEEECChHhccCCHHHHHH
Confidence 344456777888899999999975 67877777777788888777654445554444333
No 116
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.72 E-value=29 Score=29.86 Aligned_cols=62 Identities=11% Similarity=0.027 Sum_probs=41.4
Q ss_pred cEEEEEechhhHHHH------HHHHHHHhcCCcEEEeecCccccchHHHHHHHhcC------------CCeEEEEcCCCC
Q 004946 590 DVALLGYGAMVQNCL------KARALLSKLGIDVTVADARFCKPLDIKLVRELCQN------------HTFLITVEEGSI 651 (722)
Q Consensus 590 dv~lva~Gs~v~~al------eAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~------------~~~vvvvEe~~~ 651 (722)
+|+|.+. +....|. +|.+.|++.|+..+.+|+.. |.+...++.+. +=..|++++...
T Consensus 9 ~V~vy~~-~~C~~C~~~~~~~~ak~~L~~~gi~y~~vdI~~----~~~~~~~l~~~~~~~~~~~~g~~tvP~vfi~g~~i 83 (111)
T 2ct6_A 9 VIRVFIA-SSSGFVAIKKKQQDVVRFLEANKIEFEEVDITM----SEEQRQWMYKNVPPEKKPTQGNPLPPQIFNGDRYC 83 (111)
T ss_dssp CEEEEEC-SSCSCHHHHHHHHHHHHHHHHTTCCEEEEETTT----CHHHHHHHHHSCCTTTCCSSSSCCSCEEEETTEEE
T ss_pred EEEEEEc-CCCCCcccchhHHHHHHHHHHcCCCEEEEECCC----CHHHHHHHHHHhcccccccCCCCCCCEEEECCEEE
Confidence 4666654 3445666 78899999999999999975 33333333322 125778887778
Q ss_pred CChHH
Q 004946 652 GGFGS 656 (722)
Q Consensus 652 gG~gs 656 (722)
||+..
T Consensus 84 GG~d~ 88 (111)
T 2ct6_A 84 GDYDS 88 (111)
T ss_dssp EEHHH
T ss_pred eCHHH
Confidence 88764
No 117
>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*
Probab=39.26 E-value=87 Score=24.25 Aligned_cols=71 Identities=18% Similarity=0.221 Sum_probs=41.2
Q ss_pred cEEEEEechhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcC-CCeEEEEcCCCCCChHHHHHHHHH
Q 004946 590 DVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQN-HTFLITVEEGSIGGFGSHVSHFIA 663 (722)
Q Consensus 590 dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~-~~~vvvvEe~~~gG~gs~v~~~l~ 663 (722)
++++.+ -.....|..+...|++.|+....+|+..- |-..+.+.+.... .=.+++++....+|+. .+.+++.
T Consensus 2 ~i~~y~-~~~C~~C~~~~~~l~~~~i~~~~~~i~~~-~~~~~~~~~~~~~~~vP~l~~~g~~i~g~~-~i~~~~~ 73 (82)
T 1fov_A 2 NVEIYT-KETCPYCHRAKALLSSKGVSFQELPIDGN-AAKREEMIKRSGRTTVPQIFIDAQHIGGYD-DLYALDA 73 (82)
T ss_dssp CEEEEE-CSSCHHHHHHHHHHHHHTCCCEEEECTTC-SHHHHHHHHHHSSCCSCEEEETTEEEESHH-HHHHHHH
T ss_pred cEEEEE-CCCChhHHHHHHHHHHCCCCcEEEECCCC-HHHHHHHHHHhCCCCcCEEEECCEEEeCHH-HHHHHHH
Confidence 355543 34567899999999988999999998741 2111223333222 2245556544468764 4555443
No 118
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=39.05 E-value=1.2e+02 Score=36.26 Aligned_cols=65 Identities=12% Similarity=0.162 Sum_probs=35.7
Q ss_pred CCeeEEEe-cHhhH-HHHHHHHHHHHhcCCCC-EEEEEeCCCccCCCCCCcC---cHHHHH-HhcCCCCcEEEee
Q 004946 466 GLKPFCII-PSAFL-QRAYDQVVNDVDQQRLP-VRFVITSAGLVGSDGPTQC---GAFDIT-FMSCLPNMIVMAP 533 (722)
Q Consensus 466 G~~p~~~t-~~~Fl-~ra~dqi~~~~a~~~lp-Vv~v~~~~G~~G~dG~TH~---~~~d~a-~~~~iP~l~V~~P 533 (722)
..+.++.+ -..+. -.+++. ++.++..+|+ ++++++..+. .-+|++-. ...++. .++. .||.++.-
T Consensus 221 ~~~v~aviGDG~l~eG~~~EA-l~~A~~~~L~nli~Vvn~N~~-si~~~v~~~~~~~~~l~~~~~~-~G~~~~~v 292 (886)
T 2qtc_A 221 KQTVYAFLGDGEMDEPESKGA-ITIATREKLDNLVFVINCNLQ-RLDGPVTGNGKIINELEGIFEG-AGWNVIKV 292 (886)
T ss_dssp TCCEEEEEETGGGGSHHHHTT-HHHHHHTTCTTEEEEEEECSB-CSSSBSCTTSCHHHHHHHHHHH-TTCEEEEE
T ss_pred CCEEEEEECCccccccchHHH-HHHHHHcCCCcEEEEEECCCc-ccCCCccccccccHHHHHHHHh-CCCCEEEE
Confidence 34555544 22222 134544 4788889986 8888866554 33455543 244443 3443 58877643
No 119
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=38.66 E-value=92 Score=27.39 Aligned_cols=68 Identities=12% Similarity=0.078 Sum_probs=43.8
Q ss_pred CCcEEEEEech----hhHHHHHHHHHHHhcCC-cEEEeecCccccchHHHHHHHh-cCCCeEEEEcCCCCCChHH
Q 004946 588 GKDVALLGYGA----MVQNCLKARALLSKLGI-DVTVADARFCKPLDIKLVRELC-QNHTFLITVEEGSIGGFGS 656 (722)
Q Consensus 588 G~dv~lva~Gs----~v~~aleAa~~L~~~Gi-~v~Vidl~~lkPld~e~i~~~~-~~~~~vvvvEe~~~gG~gs 656 (722)
..+|+|++-|+ ....|..|.+.|.+.|+ ....+|+.. .|--.+.+.+.. ..+=+-|+|....+||...
T Consensus 19 ~~~VvvF~Kgt~~~P~C~fc~~ak~lL~~~gv~~~~~~~v~~-~~~~r~~l~~~sg~~TvPqIFI~g~~IGG~Dd 92 (118)
T 2wul_A 19 KDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLD-DPELRQGIKDYSNWPTIPQVYLNGEFVGGCDI 92 (118)
T ss_dssp HSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCSCEEEETTS-CHHHHHHHHHHHTCCSSCEEEETTEEEECHHH
T ss_pred cCCEEEEEcCCCCCCCCHHHHHHHHHHHHhCCcCeEeecccC-CHHHHHHHHHhccCCCCCeEeECCEEECCHHH
Confidence 35789998885 57889999999999998 578888753 111112222222 1233456777766788753
No 120
>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*
Probab=38.58 E-value=64 Score=27.31 Aligned_cols=68 Identities=19% Similarity=0.302 Sum_probs=44.8
Q ss_pred CcEEEEEechhhHHHHHHHHHHHhcCCcEEEeecCccccchHHH---HHHHhc-CCCeEEEEcCCCCCChHHH
Q 004946 589 KDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKL---VRELCQ-NHTFLITVEEGSIGGFGSH 657 (722)
Q Consensus 589 ~dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~---i~~~~~-~~~~vvvvEe~~~gG~gs~ 657 (722)
.+|+|++. +....|..|...|++.|+..+.+|+....|-+.+. +.+... .+=+.|++.....||+...
T Consensus 19 ~~v~vy~~-~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igG~~~~ 90 (113)
T 3rhb_A 19 NTVVIYSK-TWCSYCTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLERLTGQHTVPNVFVCGKHIGGCTDT 90 (113)
T ss_dssp SSEEEEEC-TTCHHHHHHHHHHHHTTCCCEEEEGGGSTTHHHHHHHHHHHHHSCCSSCEEEETTEEEESHHHH
T ss_pred CCEEEEEC-CCChhHHHHHHHHHHcCCCCeEEEeecCCCChHHHHHHHHHHhCCCCcCEEEECCEEEcCcHHH
Confidence 35766654 56689999999999999999999997654423332 222211 2235666766557888644
No 121
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=37.97 E-value=53 Score=27.55 Aligned_cols=67 Identities=15% Similarity=0.213 Sum_probs=43.5
Q ss_pred CcEEEEEechhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHh-c-CCCeEEEEcCCCCCChHHH
Q 004946 589 KDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELC-Q-NHTFLITVEEGSIGGFGSH 657 (722)
Q Consensus 589 ~dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~-~-~~~~vvvvEe~~~gG~gs~ 657 (722)
.+|+|.+. +....|..|.+.|++.|+..+.+|+..-.+. .+.+.+.. . .+=..|++.....||+...
T Consensus 16 ~~v~vy~~-~~Cp~C~~ak~~L~~~~i~y~~idI~~~~~~-~~~l~~~~~g~~~vP~ifi~g~~igG~d~l 84 (99)
T 3qmx_A 16 AKIEIYTW-STCPFCMRALALLKRKGVEFQEYCIDGDNEA-REAMAARANGKRSLPQIFIDDQHIGGCDDI 84 (99)
T ss_dssp CCEEEEEC-TTCHHHHHHHHHHHHHTCCCEEEECTTCHHH-HHHHHHHTTTCCCSCEEEETTEEEESHHHH
T ss_pred CCEEEEEc-CCChhHHHHHHHHHHCCCCCEEEEcCCCHHH-HHHHHHHhCCCCCCCEEEECCEEEeChHHH
Confidence 46776654 4558899999999999999999998752111 22233332 1 2225667766567887643
No 122
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=36.69 E-value=57 Score=31.96 Aligned_cols=66 Identities=9% Similarity=0.123 Sum_probs=42.8
Q ss_pred hhHHHHHHHHHHHhc-CCcEEEeecCcccc---------------------chHHHHHHHhcCCCeEEEEcCCCCCChHH
Q 004946 599 MVQNCLKARALLSKL-GIDVTVADARFCKP---------------------LDIKLVRELCQNHTFLITVEEGSIGGFGS 656 (722)
Q Consensus 599 ~v~~aleAa~~L~~~-Gi~v~Vidl~~lkP---------------------ld~e~i~~~~~~~~~vvvvEe~~~gG~gs 656 (722)
....+..+++.|++. |.+++++|+.-+.+ -|.+.+.+.+...+.||+.=.-+.+++.+
T Consensus 17 T~~la~~i~~~l~~~~g~~v~~~dl~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~AD~iI~~sP~y~~~~p~ 96 (242)
T 1sqs_A 17 TLEYTKRLSSIISSRNNVDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGVIKKELLESDIIIISSPVYLQNVSV 96 (242)
T ss_dssp HHHHHHHHHHHHHHHSCCEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHHHHHHHHHHCSEEEEEEEECSSSCCH
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEcccCCCCCCCchHHhhccCCCCccchHHHHHHHHHHHHHCCEEEEEccccccCCCH
Confidence 345566667778777 99999999875321 23344555556677777765555567776
Q ss_pred HHHHHHHh
Q 004946 657 HVSHFIAL 664 (722)
Q Consensus 657 ~v~~~l~~ 664 (722)
.+..++..
T Consensus 97 ~lK~~iDr 104 (242)
T 1sqs_A 97 DTKNFIER 104 (242)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77666654
No 123
>3gx1_A LIN1832 protein; APC63308.2, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Listeria innocua CLIP11262}
Probab=36.48 E-value=2.3e+02 Score=25.13 Aligned_cols=112 Identities=13% Similarity=0.205 Sum_probs=66.0
Q ss_pred cEEEEEech-hhHHHHHHHHHHHhcCCcEEEeecCccccchH--HHHHHHhcC----CCeEEEEcCCCCCChHHHHHHHH
Q 004946 590 DVALLGYGA-MVQNCLKARALLSKLGIDVTVADARFCKPLDI--KLVRELCQN----HTFLITVEEGSIGGFGSHVSHFI 662 (722)
Q Consensus 590 dv~lva~Gs-~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~--e~i~~~~~~----~~~vvvvEe~~~gG~gs~v~~~l 662 (722)
.++|++.|. ......++++.+-.. -.+..+|+.-=...+. +.+++.+++ .+.+|.++-++...++..+....
T Consensus 6 giiivsHG~~~A~~l~~~a~~i~G~-~~~~aid~~~~~~~~~~~~~i~~~i~~~d~~~GVLiL~DmGSp~n~a~~l~~~~ 84 (130)
T 3gx1_A 6 EVIVMMHGRSTATSMVETVQELLSI-ESGIALDMPLTVEVKAMYEKLKQTVVKLNPVKGVLILSDMGSLTSFGNILTEEL 84 (130)
T ss_dssp EEEEEEESSSHHHHHHHHHHHHHTC-CCCEEEEECTTSCHHHHHHHHHHHHHTSCCTTCEEEEECSGGGGTHHHHHHHHH
T ss_pred EEEEEcCCHHHHHHHHHHHHHHcCc-cCEEEEEecCCCCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCHHHHHHHHHHhc
Confidence 588999999 778888899987655 6777888764222221 334444432 35788888866666665443321
Q ss_pred HhcCCCCCCCceEEEecCCccccCCCHHHHH--HHcCCCHHHHHHHHHHHhhcc
Q 004946 663 ALDGLLDSGVKWRPIVLPDNYIEHASPTQQL--ALAGLTGHHIAATALSLLGRT 714 (722)
Q Consensus 663 ~~~~~~~~~~~v~~ig~~d~f~~~g~~~~l~--~~~gl~~~~I~~~i~~ll~~~ 714 (722)
+ .++..+.....+.- -|.. ...+-+-+.|++.++++.+.+
T Consensus 85 ---~-----~~v~vI~gvnlpml----lea~~~~~~~~~l~el~~~~~~~~~~~ 126 (130)
T 3gx1_A 85 ---G-----IRTKTVTMVSTPVV----LEAMRKASLGRGLEDIYQSCEQLFENK 126 (130)
T ss_dssp ---C-----CCEEEECSCCHHHH----HHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred ---C-----CCEEEEeCCCHHHH----HHHHHHhhcCCCHHHHHHHHHHHHHHh
Confidence 1 23444443332210 1221 234558888999888776543
No 124
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=36.19 E-value=33 Score=30.54 Aligned_cols=54 Identities=17% Similarity=0.047 Sum_probs=36.8
Q ss_pred HHHHHHHHHhcCCcEEEeecCccccchHHHHHHHh---------cCCCeEEEEcCCCCCChHHH
Q 004946 603 CLKARALLSKLGIDVTVADARFCKPLDIKLVRELC---------QNHTFLITVEEGSIGGFGSH 657 (722)
Q Consensus 603 aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~---------~~~~~vvvvEe~~~gG~gs~ 657 (722)
|..|...|+.+||..+.+|+.. .|--.+.+.+.. ..+-..|++++-..||+-.-
T Consensus 19 c~~aK~lL~~kgV~feEidI~~-d~~~r~eM~~~~~~~~~~~~G~~tvPQIFi~~~~iGG~Dd~ 81 (121)
T 1u6t_A 19 QQDVLGFLEANKIGFEEKDIAA-NEENRKWMRENVPENSRPATGYPLPPQIFNESQYRGDYDAF 81 (121)
T ss_dssp HHHHHHHHHHTTCCEEEEECTT-CHHHHHHHHHHSCGGGSCSSSSCCSCEEEETTEEEEEHHHH
T ss_pred HHHHHHHHHHCCCceEEEECCC-CHHHHHHHHHhccccccccCCCcCCCEEEECCEEEechHHH
Confidence 5788899999999999999974 222223333333 11336788888888998743
No 125
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=35.87 E-value=26 Score=33.12 Aligned_cols=32 Identities=25% Similarity=0.314 Sum_probs=25.3
Q ss_pred CcEEEEEechhhHHHHHHHHHHHhcCCcEEEeecC
Q 004946 589 KDVALLGYGAMVQNCLKARALLSKLGIDVTVADAR 623 (722)
Q Consensus 589 ~dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~ 623 (722)
-||+||+-|..-- .||-.|.+.|++|.|++-.
T Consensus 3 ~dV~IIGaGpaGL---~aA~~La~~G~~V~v~Ek~ 34 (336)
T 3kkj_A 3 VPIAIIGTGIAGL---SAAQALTAAGHQVHLFDKS 34 (336)
T ss_dssp CCEEEECCSHHHH---HHHHHHHHTTCCEEEECSS
T ss_pred CCEEEECcCHHHH---HHHHHHHHCCCCEEEEECC
Confidence 3799999887653 4566788899999999853
No 126
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=34.71 E-value=61 Score=30.30 Aligned_cols=67 Identities=15% Similarity=0.099 Sum_probs=40.7
Q ss_pred chhhHHHHHHHHHHHhcCCcEEEeecCccccchHH-------------HHHHHhcCCCeEEEEcCCCCCChHHHHHHHHH
Q 004946 597 GAMVQNCLKARALLSKLGIDVTVADARFCKPLDIK-------------LVRELCQNHTFLITVEEGSIGGFGSHVSHFIA 663 (722)
Q Consensus 597 Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e-------------~i~~~~~~~~~vvvvEe~~~gG~gs~v~~~l~ 663 (722)
|..-..+..+++.|++.|++++++|+... +.+.- ...+.+.+.+.||+.=.-+.+++...+..++.
T Consensus 17 g~T~~la~~i~~~l~~~g~~v~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~~~~~~~lk~~ld 95 (200)
T 2a5l_A 17 GATAEMARQIARGVEQGGFEARVRTVPAV-STECEAVAPDIPAEGALYATLEDLKNCAGLALGSPTRFGNMASPLKYFLD 95 (200)
T ss_dssp SHHHHHHHHHHHHHHHTTCEEEEEBCCCE-EC-------------CCBCCHHHHHTCSEEEEEEECBTTBCCHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhhCCCEEEEEEhhhc-cchhhhhccccccccCchhhHHHHHHCCEEEEEcChhccCccHHHHHHHH
Confidence 34445566667777778999999999864 21110 11334456677776655455677777766665
Q ss_pred h
Q 004946 664 L 664 (722)
Q Consensus 664 ~ 664 (722)
.
T Consensus 96 ~ 96 (200)
T 2a5l_A 96 G 96 (200)
T ss_dssp T
T ss_pred H
Confidence 4
No 127
>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}
Probab=34.34 E-value=67 Score=25.81 Aligned_cols=65 Identities=14% Similarity=0.234 Sum_probs=41.0
Q ss_pred cEEEEEechhhHHHHHHHHHHHhcCCcEEEeecCccccchH----HHHHHHhc-CCCeEEEEcCCCCCChH
Q 004946 590 DVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDI----KLVRELCQ-NHTFLITVEEGSIGGFG 655 (722)
Q Consensus 590 dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~----e~i~~~~~-~~~~vvvvEe~~~gG~g 655 (722)
+++|.+ .+....|..|...|++.|+..+.+|+....+-+. +.+.+... ..-.++++++...+|+.
T Consensus 13 ~v~ly~-~~~Cp~C~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~l~~~~g~~~vP~l~~~g~~i~G~~ 82 (92)
T 3ic4_A 13 EVLMYG-LSTCPHCKRTLEFLKREGVDFEVIWIDKLEGEERKKVIEKVHSISGSYSVPVVVKGDKHVLGYN 82 (92)
T ss_dssp SSEEEE-CTTCHHHHHHHHHHHHHTCCCEEEEGGGCCHHHHHHHHHHHHHHHSSSCSCEEEETTEEEESCC
T ss_pred eEEEEE-CCCChHHHHHHHHHHHcCCCcEEEEeeeCCccchHHHHHHHHHhcCCCCcCEEEECCEEEeCCC
Confidence 466654 3456889999999999999999999886554322 22222221 23356666544467774
No 128
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=34.20 E-value=1.8e+02 Score=26.34 Aligned_cols=52 Identities=23% Similarity=0.181 Sum_probs=29.9
Q ss_pred EEEechhh----HHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcCCCeEEEE
Q 004946 593 LLGYGAMV----QNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITV 646 (722)
Q Consensus 593 lva~Gs~v----~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~~~vvvv 646 (722)
+|-|+|+. ..|..+++.|++.|++++++|+... .|.+.+...+.+.+.||+.
T Consensus 8 ~IvY~S~~GnT~~iA~~ia~~l~~~g~~v~~~~~~~~--~~~~~~~~~~~~~d~ii~G 63 (159)
T 3fni_A 8 GVFYVSEYGYSDRLAQAIINGITKTGVGVDVVDLGAA--VDLQELRELVGRCTGLVIG 63 (159)
T ss_dssp EEEECTTSTTHHHHHHHHHHHHHHTTCEEEEEESSSC--CCHHHHHHHHHTEEEEEEE
T ss_pred EEEEECCChHHHHHHHHHHHHHHHCCCeEEEEECcCc--CCHHHHHHHHHhCCEEEEE
Confidence 44455555 4455556667777999999998753 0233333333445555544
No 129
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=33.86 E-value=1.4e+02 Score=26.88 Aligned_cols=59 Identities=14% Similarity=0.078 Sum_probs=41.6
Q ss_pred cEEEEEechh-hHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcCCCeEEEEcC
Q 004946 590 DVALLGYGAM-VQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEE 648 (722)
Q Consensus 590 dv~lva~Gs~-v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~~~vvvvEe 648 (722)
++.|+..+.. ...|.+..+.|++.|+.+++.+.+.=.+|-...-.....+...+++|-+
T Consensus 10 Qv~IlpVs~~~~~YA~~V~~~L~~~GiRvevD~~r~~e~Lg~kIR~a~~~kvPy~lVVG~ 69 (130)
T 1v95_A 10 DCSVIVVNKQTKDYAESVGRKVRDLGMVVDLIFLNTEVSLSQALEDVSRGGSPFAIVITQ 69 (130)
T ss_dssp TEEEEESSSGGGHHHHHHHHHHHTTTCCEEEEECTTSSCHHHHHHHHHHHTCSEEEEECH
T ss_pred eEEEEEeCcchHHHHHHHHHHHHHCCCEEEEecCCCCCcHHHHHHHHHHcCCCEEEEEec
Confidence 6777777654 4889999999999999999876643344544433334567777777754
No 130
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=33.17 E-value=2.7e+02 Score=25.08 Aligned_cols=53 Identities=19% Similarity=0.145 Sum_probs=30.4
Q ss_pred EEEechhh----HHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcCCCeEEEEcC
Q 004946 593 LLGYGAMV----QNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEE 648 (722)
Q Consensus 593 lva~Gs~v----~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~~~vvvvEe 648 (722)
+|-|+|+. ..|...++.|++.|++++++|+.... .+.+...+.+++.||+.=.
T Consensus 4 ~IvY~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~---~~~~~~~~~~~d~ii~Gsp 60 (161)
T 3hly_A 4 LIGYLSDYGYSDRLSQAIGRGLVKTGVAVEMVDLRAVD---PQELIEAVSSARGIVLGTP 60 (161)
T ss_dssp EEEECTTSTTHHHHHHHHHHHHHHTTCCEEEEETTTCC---HHHHHHHHHHCSEEEEECC
T ss_pred EEEEECCChHHHHHHHHHHHHHHhCCCeEEEEECCCCC---HHHHHHHHHhCCEEEEEcC
Confidence 34455555 44555566677779999999987532 2333333344555555433
No 131
>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}
Probab=32.33 E-value=1.1e+02 Score=24.50 Aligned_cols=65 Identities=25% Similarity=0.286 Sum_probs=39.2
Q ss_pred cEEEEEechhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhc-CCCeEEEEcCCCCCChHH
Q 004946 590 DVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQ-NHTFLITVEEGSIGGFGS 656 (722)
Q Consensus 590 dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~-~~~~vvvvEe~~~gG~gs 656 (722)
.+++.+ -.....|..+...|++.|+..+.+|+..- |-..+.+.+... ..=.+++++....+|+..
T Consensus 7 ~v~ly~-~~~C~~C~~~~~~L~~~~i~~~~~di~~~-~~~~~~l~~~~~~~~vP~l~~~g~~i~g~~~ 72 (92)
T 2khp_A 7 DVIIYT-RPGCPYCARAKALLARKGAEFNEIDASAT-PELRAEMQERSGRNTFPQIFIGSVHVGGCDD 72 (92)
T ss_dssp CEEEEE-CTTCHHHHHHHHHHHHTTCCCEEEESTTS-HHHHHHHHHHHTSSCCCEEEETTEEEESHHH
T ss_pred cEEEEE-CCCChhHHHHHHHHHHcCCCcEEEECCCC-HHHHHHHHHHhCCCCcCEEEECCEEEcCHHH
Confidence 355544 35568899999999999999999998731 211223333322 222455565444677654
No 132
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=31.30 E-value=77 Score=29.53 Aligned_cols=66 Identities=8% Similarity=0.077 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHHHhc------CCcEEEeecCc--cccch--------------------HHHHHHHhcCCCeEEEEcCCC
Q 004946 599 MVQNCLKARALLSKL------GIDVTVADARF--CKPLD--------------------IKLVRELCQNHTFLITVEEGS 650 (722)
Q Consensus 599 ~v~~aleAa~~L~~~------Gi~v~Vidl~~--lkPld--------------------~e~i~~~~~~~~~vvvvEe~~ 650 (722)
.-..+..+++.|++. |.+++++|+.- +.|++ .+.+.+.+...+.||++=.-+
T Consensus 16 t~~la~~~~~~l~~~~~~~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iI~~sP~y 95 (191)
T 1t0i_A 16 CPEIAAYVKRTIENSEELIDQKLKIQVVDLQQIALPLYEDDDELIPAQIKSVDEYADSKTRSWSRIVNALDIIVFVTPQY 95 (191)
T ss_dssp HHHHHHHHHHHHHTCTTTTTTTCEEEEECHHHHCCCSSCCCCCSCGGGCCSGGGCSCHHHHHHHHHHHTCSEEEEEEECB
T ss_pred hHHHHHHHHHHHHHhhccCCCCceEEEEehhhcCCCCCCCccccccccccCcccCCcHHHHHHHHHHHhCCEEEEEeceE
Confidence 344555666777765 78999999874 32221 133445556677777665555
Q ss_pred CCChHHHHHHHHHh
Q 004946 651 IGGFGSHVSHFIAL 664 (722)
Q Consensus 651 ~gG~gs~v~~~l~~ 664 (722)
.+++.+.+..++..
T Consensus 96 ~~~~p~~lK~~iD~ 109 (191)
T 1t0i_A 96 NWGYPAALKNAIDR 109 (191)
T ss_dssp TTBCCHHHHHHHHT
T ss_pred CCCCCHHHHHHHHH
Confidence 56777677666654
No 133
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=31.13 E-value=1.1e+02 Score=29.44 Aligned_cols=55 Identities=18% Similarity=0.227 Sum_probs=36.6
Q ss_pred CCcEEEEEechhh----HHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcCCCeEEE
Q 004946 588 GKDVALLGYGAMV----QNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLIT 645 (722)
Q Consensus 588 G~dv~lva~Gs~v----~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~~~vvv 645 (722)
|++|++|.|++.. .....+.+.|++.|+++.++++..- +.+.+.+.+++.+.|++
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~---~~~~~~~~l~~ad~I~l 85 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATE---SLGEITTKLRKNDFIYV 85 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTS---CHHHHHHHHHHSSEEEE
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCC---ChHHHHHHHHhCCEEEE
Confidence 6789999988763 3455566677778999999987652 33333444455565553
No 134
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A
Probab=30.79 E-value=22 Score=31.65 Aligned_cols=56 Identities=21% Similarity=0.208 Sum_probs=37.5
Q ss_pred EEeCCcEEEEEechhhH--HHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcCCCeEE
Q 004946 585 LVEGKDVALLGYGAMVQ--NCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLI 644 (722)
Q Consensus 585 l~eG~dv~lva~Gs~v~--~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~~~vv 644 (722)
+.++.|++||++|.... .--+..+.|+++||.+++.|-..- -.+...++.+.++|.
T Consensus 58 l~~~~evliiGtG~~~~~~~~~~~~~~l~~~gI~ve~m~T~~A----~rtyN~L~~EgR~Va 115 (122)
T 2ab1_A 58 VEKGVQTLVIGRGMSEALKVPSSTVEYLKKHGIDVRVLQTEQA----VKEYNALVAQGVRVG 115 (122)
T ss_dssp HTTCCSEEEEEECSSCCSCCCHHHHHHHHHTTCEEEEECHHHH----HHHHHHHHHTTCCEE
T ss_pred hhCCCCEEEECCCCCCccCCCHHHHHHHHHcCCEEEEeCHHHH----HHHHHHHHhCCCcEE
Confidence 34567999999998764 345567789999999999986421 133344554555443
No 135
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=30.29 E-value=1e+02 Score=27.10 Aligned_cols=32 Identities=22% Similarity=0.291 Sum_probs=25.6
Q ss_pred CcEEEEEechhhHHHHHHHHHHHhcCCcEEEeecC
Q 004946 589 KDVALLGYGAMVQNCLKARALLSKLGIDVTVADAR 623 (722)
Q Consensus 589 ~dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~ 623 (722)
.+++|+++|.+... .++.|++.|.++.++|..
T Consensus 8 ~~viIiG~G~~G~~---la~~L~~~g~~v~vid~~ 39 (140)
T 3fwz_A 8 NHALLVGYGRVGSL---LGEKLLASDIPLVVIETS 39 (140)
T ss_dssp SCEEEECCSHHHHH---HHHHHHHTTCCEEEEESC
T ss_pred CCEEEECcCHHHHH---HHHHHHHCCCCEEEEECC
Confidence 47999999987764 456777789999999875
No 136
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=29.71 E-value=81 Score=30.20 Aligned_cols=60 Identities=23% Similarity=0.122 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcCCCeEEEEcCCCCCChHHHHHHHHH
Q 004946 602 NCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIA 663 (722)
Q Consensus 602 ~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~~~vvvvEe~~~gG~gs~v~~~l~ 663 (722)
.+..+++.+++.|.+++++|+.. +.|.+.+.+.+...+.||+.=.-+-+++-..+..++.
T Consensus 35 l~~~~~~~~~~~g~~v~~~dL~~--~~d~~~~~~~l~~AD~iV~~~P~y~~s~pa~LK~~iD 94 (204)
T 2amj_A 35 LTEVADGTLRDLGHDVRIVRADS--DYDVKAEVQNFLWADVVIWQMPGWWMGAPWTVKKYID 94 (204)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSS--CCCHHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEEEeCCc--cccHHHHHHHHHhCCEEEEECCccccCCCHHHHHHHH
Confidence 44456667777799999999984 5677777777778887777665555666555555554
No 137
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=29.67 E-value=67 Score=32.76 Aligned_cols=63 Identities=17% Similarity=0.090 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhcCCcEEEeecCccccc-------h--HHHHHHHhcCCCeEEEEcCCCCCChHHHHHHHHH
Q 004946 601 QNCLKARALLSKLGIDVTVADARFCKPL-------D--IKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIA 663 (722)
Q Consensus 601 ~~aleAa~~L~~~Gi~v~Vidl~~lkPl-------d--~e~i~~~~~~~~~vvvvEe~~~gG~gs~v~~~l~ 663 (722)
..+..+++.+++.|++++++|+.-+... + .+.+.+.+...+.+|++=.-+.+++...+..++.
T Consensus 76 ~La~~~~~~l~~~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~ADgiV~aSP~Yn~sipg~LKn~ID 147 (279)
T 2fzv_A 76 LAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVWCSPERHGQITSVMKAQID 147 (279)
T ss_dssp HHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEEEEEEETTEECHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHCCeEEEEcCccccCcCHHHHHHHH
Confidence 4555677778878999999999875311 1 3445555566666666554444555555555554
No 138
>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0
Probab=29.67 E-value=1.6e+02 Score=25.00 Aligned_cols=67 Identities=19% Similarity=0.322 Sum_probs=43.9
Q ss_pred CCcEEEEEechhhHHHHHHHHHHHhcCCcEEEeecCccccchH----HHHHHHh-cCCCeEEEEcCCCCCChHHH
Q 004946 588 GKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDI----KLVRELC-QNHTFLITVEEGSIGGFGSH 657 (722)
Q Consensus 588 G~dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~----e~i~~~~-~~~~~vvvvEe~~~gG~gs~ 657 (722)
..+|+|.+. +....|..|.+.|++.|+..+++|+.... |. +.+.+.. ..+=+.|++.....||+...
T Consensus 16 ~~~v~vy~~-~~Cp~C~~ak~~L~~~~i~~~~~dvd~~~--~~~~~~~~l~~~~g~~tvP~vfi~g~~igG~d~l 87 (114)
T 3h8q_A 16 RSRVVIFSK-SYCPHSTRVKELFSSLGVECNVLELDQVD--DGARVQEVLSEITNQKTVPNIFVNKVHVGGCDQT 87 (114)
T ss_dssp HCSEEEEEC-TTCHHHHHHHHHHHHTTCCCEEEETTTST--THHHHHHHHHHHHSCCSSCEEEETTEEEESHHHH
T ss_pred cCCEEEEEc-CCCCcHHHHHHHHHHcCCCcEEEEecCCC--ChHHHHHHHHHHhCCCccCEEEECCEEEeCHHHH
Confidence 346777665 66789999999999999999999986431 22 2232222 22235667765557988643
No 139
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=29.44 E-value=98 Score=29.52 Aligned_cols=63 Identities=11% Similarity=-0.002 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhcCCcEEEeecCcccc---chHHHHHHHhcCCCeEEEEcCCCCCChHHHHHHHHHh
Q 004946 602 NCLKARALLSKLGIDVTVADARFCKP---LDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIAL 664 (722)
Q Consensus 602 ~aleAa~~L~~~Gi~v~Vidl~~lkP---ld~e~i~~~~~~~~~vvvvEe~~~gG~gs~v~~~l~~ 664 (722)
.+...++.+++.|.+++++|+.-..| .|.+...+.+...+.||+.=.-+-+++.+.+..++.+
T Consensus 18 l~~~l~~~~~~~g~ev~~~dL~~~~~~~~~dv~~~~~~l~~AD~iv~~~P~y~~~~pa~lK~~iDr 83 (192)
T 3f2v_A 18 VHKHWSDAVRQHTDRFTVHELYAVYPQGKIDVAAEQKLIETHDSLVWQFPIYWFNCPPLLKQWLDE 83 (192)
T ss_dssp HHHHHHHHHTTCTTTEEEEEHHHHCTTCCCCHHHHHHHHHTSSSEEEEEECBTTBCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCeEEEEEchhcCCCCchhHHHHHHHHHhCCEEEEEcChhhcCCCHHHHHHHHH
Confidence 34445566777799999999987665 4566666777788887777665556676666666654
No 140
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=28.72 E-value=1.3e+02 Score=26.69 Aligned_cols=32 Identities=19% Similarity=0.203 Sum_probs=24.8
Q ss_pred CcEEEEEechhhHHHHHHHHHHHhcCCcEEEeecC
Q 004946 589 KDVALLGYGAMVQNCLKARALLSKLGIDVTVADAR 623 (722)
Q Consensus 589 ~dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~ 623 (722)
.+++|+++|.... ..++.|.+.|.++.++|..
T Consensus 4 ~~vlI~G~G~vG~---~la~~L~~~g~~V~vid~~ 35 (153)
T 1id1_A 4 DHFIVCGHSILAI---NTILQLNQRGQNVTVISNL 35 (153)
T ss_dssp SCEEEECCSHHHH---HHHHHHHHTTCCEEEEECC
T ss_pred CcEEEECCCHHHH---HHHHHHHHCCCCEEEEECC
Confidence 4688999887665 4456777789999999874
No 141
>3cpk_A Uncharacterized protein Q7W7N7_borpa; BPP2477, BER31, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Bordetella parapertussis 12822} PDB: 2k2e_A
Probab=28.26 E-value=43 Score=30.98 Aligned_cols=53 Identities=17% Similarity=0.196 Sum_probs=35.4
Q ss_pred CCcEEEEEechhhH-HHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcCCCeEE
Q 004946 588 GKDVALLGYGAMVQ-NCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLI 644 (722)
Q Consensus 588 G~dv~lva~Gs~v~-~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~~~vv 644 (722)
..+++||++|...+ .--+..+.|++.||.+++.|-..- ..+..-+..+.++|+
T Consensus 88 ~pEvliiGTG~~~~~l~p~~~~~L~~~GIgvE~M~T~aA----~rTyNiL~~EgRrVa 141 (150)
T 3cpk_A 88 APEVLLVGTGRRQHLLGPEQVRPLLAMGVGVEAMDTQAA----ARTYNILMAEGRRVV 141 (150)
T ss_dssp CCSEEEEECTTSCCCCCHHHHHHHHTTTCEEEEECHHHH----HHHHHHHHHTTCCEE
T ss_pred CCCEEEEcCCCCCCCCCHHHHHHHHHcCCEEEEeCHHHH----HHHHHHHHhCCCcEE
Confidence 56999999998664 334566788999999999986421 123334454555544
No 142
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=27.86 E-value=68 Score=38.51 Aligned_cols=109 Identities=16% Similarity=0.062 Sum_probs=60.9
Q ss_pred eecccchHHHHHHHHHHhcC----C-----C--eeEEEe-cHhh-HH-HHHHHHHHHHhcCCCC---EEEEEeCCCccCC
Q 004946 446 FDVGMAEQHAVTFSAGLACG----G-----L--KPFCII-PSAF-LQ-RAYDQVVNDVDQQRLP---VRFVITSAGLVGS 508 (722)
Q Consensus 446 ~d~GIaE~~av~~AaGlA~~----G-----~--~p~~~t-~~~F-l~-ra~dqi~~~~a~~~lp---Vv~v~~~~G~~G~ 508 (722)
++.+..++. +..|.|+|.+ + . .+++.+ -+.| -+ ..++ -+|.++..++| +++++.+-++ |-
T Consensus 318 ~~~shlg~~-~p~A~G~A~A~~~~~~~~~~~~~~vv~v~GDGa~a~qG~~~E-aln~A~~~~lp~gg~I~vv~nN~~-~i 394 (933)
T 2jgd_A 318 FNPSHLEIV-SPVVIGSVRARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQE-TLNMSKARGYEVGGTVRIVINNQV-GF 394 (933)
T ss_dssp CCCSSTTCH-HHHHHHHHHHHHTTSSSCCGGGEEEEEEEEHHHHHHCTHHHH-HHHHTTSTTTCCSCCEEEEEECC----
T ss_pred ccCcccccc-cCHHHHHHHHHHhhccccCCCCeEEEEEECCcccccCCHHHH-HHHHhhccCCCCCceEEEEEeCCc-cc
Confidence 455555553 6777777765 2 1 333333 2444 22 3343 35788899999 7877755553 32
Q ss_pred CC-CCc-----CcHHHHHHhcCCCCcEEEeeCCHHHHHHHHHHHhh---hCCCCEEEEe
Q 004946 509 DG-PTQ-----CGAFDITFMSCLPNMIVMAPSDEDELVDMVATVAS---IDDRPVCFRY 558 (722)
Q Consensus 509 dG-~TH-----~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~---~~~~Pv~ir~ 558 (722)
.+ ++. ....+++-.-.+|.+.| .--|+.++...++.|.+ ..++|++|-.
T Consensus 395 st~~~~~~~~~~~~~~~a~a~g~p~~~V-dG~D~~av~~a~~~A~e~~r~~~~P~lIe~ 452 (933)
T 2jgd_A 395 TTSNPLDARSTPYCTDIGKMVQAPIFHV-NADDPEAVAFVTRLALDFRNTFKRDVFIDL 452 (933)
T ss_dssp ------------CGGGGGGTTTCCEEEE-ETTCHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred cCCCHHhcccchhHHHHHHHcCCCEEEE-CCCCHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 23 232 12334333344665544 56788889999988874 2468988743
No 143
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=27.78 E-value=83 Score=27.52 Aligned_cols=50 Identities=14% Similarity=-0.005 Sum_probs=30.1
Q ss_pred chhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcCCCeEEEEcCCCCCC
Q 004946 597 GAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSIGG 653 (722)
Q Consensus 597 Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~~~vvvvEe~~~gG 653 (722)
|+.-..|...++.|++.|++++++|+....+ + -+.+.+.||+.=.-+-+|
T Consensus 10 GnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~---~----~l~~~d~iiig~pty~~g 59 (138)
T 5nul_A 10 GNTEKMAELIAKGIIESGKDVNTINVSDVNI---D----ELLNEDILILGCSAMTDE 59 (138)
T ss_dssp SHHHHHHHHHHHHHHHTTCCCEEEEGGGCCH---H----HHTTCSEEEEEECCBTTT
T ss_pred chHHHHHHHHHHHHHHCCCeEEEEEhhhCCH---H----HHhhCCEEEEEcCccCCC
Confidence 3444555556666777899999999875543 1 234566666654433333
No 144
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=27.63 E-value=1.3e+02 Score=28.65 Aligned_cols=59 Identities=3% Similarity=0.021 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHhcCCcEEEeecCccccchH----------HHHHHHhcCCCeEEEEcCCCCCChHHHH
Q 004946 600 VQNCLKARALLSKLGIDVTVADARFCKPLDI----------KLVRELCQNHTFLITVEEGSIGGFGSHV 658 (722)
Q Consensus 600 v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~----------e~i~~~~~~~~~vvvvEe~~~gG~gs~v 658 (722)
.....+++..+.+.|.+++++|+.-+-.++. +.+++.++..+.+|++=.-+.|++...+
T Consensus 18 ~~~la~~~~~~~~~~~~~~~idl~dLP~~~~d~~~~~p~~~~~l~~~i~~aD~~ii~tPeYn~s~pg~L 86 (190)
T 3u7r_A 18 NHKLMKVLQKLAEGRLEFHLLHIGDLPHYNDDLWADAPESVLRLKDRIEHSDAVLAITPEYNRSYPGMI 86 (190)
T ss_dssp HHHHHHHHHHHHTTTEEEEECCGGGSCCCCGGGGGGCCHHHHHHHHHHHTSSEEEEECCCBTTBCCHHH
T ss_pred HHHHHHHHHHhccCCCEEEEEecccCCCCCCCcccCCCHHHHHHHHHHHhCCcEEEechhhcccCCHHH
Confidence 3334444444555689999999876422322 3456667777777766544434444333
No 145
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=27.61 E-value=1.2e+02 Score=26.17 Aligned_cols=65 Identities=11% Similarity=-0.028 Sum_probs=37.3
Q ss_pred EEEechhh----HHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcCCCeEEEEcCCCCCChHHH--HHHHHHh
Q 004946 593 LLGYGAMV----QNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSIGGFGSH--VSHFIAL 664 (722)
Q Consensus 593 lva~Gs~v----~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~~~vvvvEe~~~gG~gs~--v~~~l~~ 664 (722)
+|-|+|.. ..|..+++.|++.|++++++++.-.. .+. +.+.+.+|+.=.-+.+|.-.. +..++..
T Consensus 3 ~iiy~S~tGnT~~~a~~i~~~l~~~g~~v~~~~~~~~~---~~~----l~~~d~vi~g~p~y~~~~~~~~~~~~fl~~ 73 (137)
T 2fz5_A 3 EIVYWSGTGNTEAMANEIEAAVKAAGADVESVRFEDTN---VDD----VASKDVILLGCPAMGSEELEDSVVEPFFTD 73 (137)
T ss_dssp EEEECCSSSHHHHHHHHHHHHHHHTTCCEEEEETTSCC---HHH----HHTCSEEEEECCCBTTTBCCHHHHHHHHHH
T ss_pred EEEEECCCChHHHHHHHHHHHHHhCCCeEEEEEcccCC---HHH----HhcCCEEEEEccccCCCCCCHHHHHHHHHH
Confidence 34455544 44445556666679999999987543 222 345677777655444454333 5555543
No 146
>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12
Probab=27.49 E-value=93 Score=27.13 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=34.1
Q ss_pred chhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhc
Q 004946 597 GAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQ 638 (722)
Q Consensus 597 Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~ 638 (722)
-+....|.+|.+.|+++|+..+++|+.. .|.+.+.+.++++
T Consensus 7 ~~~C~~c~ka~~~L~~~gi~~~~~di~~-~~~~~~el~~~l~ 47 (120)
T 3l78_A 7 SPSCTSCRKARAWLNRHDVVFQEHNIMT-SPLSRDELLKILS 47 (120)
T ss_dssp CSSCHHHHHHHHHHHHTTCCEEEEETTT-SCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcCCCeEEEeccc-CCCcHHHHHHHHh
Confidence 3456789999999999999999999974 5778888877765
No 147
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0
Probab=27.36 E-value=81 Score=27.63 Aligned_cols=43 Identities=26% Similarity=0.366 Sum_probs=35.7
Q ss_pred chhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcCC
Q 004946 597 GAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNH 640 (722)
Q Consensus 597 Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~ 640 (722)
-.....|.+|.+.|+++|+..+++|+.. .|.+.+.+.++++..
T Consensus 10 ~~~C~~c~ka~~~L~~~gi~~~~~di~~-~~~~~~eL~~~l~~~ 52 (120)
T 3fz4_A 10 YPKCSTCRRAKAELDDLAWDYDAIDIKK-NPPAASLIRNWLENS 52 (120)
T ss_dssp CSSCHHHHHHHHHHHHHTCCEEEEETTT-SCCCHHHHHHHHHHS
T ss_pred CCCChHHHHHHHHHHHcCCceEEEEecc-CchhHHHHHHHHHHc
Confidence 3456789999999999999999999975 688888888877654
No 148
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=27.06 E-value=84 Score=33.60 Aligned_cols=51 Identities=16% Similarity=0.255 Sum_probs=30.5
Q ss_pred cchHHHHHHHHHHHHHcCCCCeEEEEecCCCcccchHHHHHHHhhhcCCCEEEEEECCC
Q 004946 195 CNSVSAGLGMAVARDIKGKRECIVTVISNGTTMAGQAYEAMSNAGYLDSNMIVILNDSR 253 (722)
Q Consensus 195 G~~ls~A~G~A~A~~l~~~~~~Vv~viGDGa~~~G~~~EAln~A~~~~~plivIv~dN~ 253 (722)
..++++|.|+|++ | .+.+++.-|.|-. ..++.|.+++....|+++++-+-.
T Consensus 74 ~~a~~~a~Gaa~a----G-~r~~~~ts~~G~~---~~~d~l~~aa~~~~P~Vi~~~~~~ 124 (395)
T 1yd7_A 74 IASIAAAIGASWA----G-AKAMTATSGPGFS---LMQENIGYAVMTETPVVIVDVQRS 124 (395)
T ss_dssp HHHHHHHHHHHHT----T-CCEEEEEETTHHH---HHTTTCC----CCCCEEEEEEC--
T ss_pred HHHHHHHHHHHHh----C-CcEEEEeCchHHH---HHHHHHHHHHhcCCCEEEEEeeCC
Confidence 3456666666665 3 3466777777765 356777777777799999876654
No 149
>2fi9_A Outer membrane protein; bartonella hense protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bartonella henselae} SCOP: c.103.1.1
Probab=26.95 E-value=26 Score=31.49 Aligned_cols=53 Identities=17% Similarity=0.167 Sum_probs=34.9
Q ss_pred CCcEEEEEechhh-HHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcCCCeEE
Q 004946 588 GKDVALLGYGAMV-QNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLI 644 (722)
Q Consensus 588 G~dv~lva~Gs~v-~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~~~vv 644 (722)
..|++||++|... ..--+..+.|+++||.+++.|-+.- -.+...+..+.++|.
T Consensus 68 ~pevliiGtG~~~~~l~p~~~~~l~~~GI~vE~m~T~aA----crtyNiL~~EgR~Va 121 (128)
T 2fi9_A 68 QIEVLLIGTGVELLRLPEELRVLLWEKRISSDTMSTGAA----VRTFNVLLAEDRAVA 121 (128)
T ss_dssp GCSEEEEECTTSCCCCCHHHHHHHHHTTCEEEEECHHHH----HHHHHHHHHTTCCEE
T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHcCCEEEEeCHHHH----HHHHHHHHhCCCcEE
Confidence 3799999999875 2333556778999999999986521 133334554544443
No 150
>2fvt_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: c.103.1.1
Probab=26.66 E-value=26 Score=31.82 Aligned_cols=36 Identities=19% Similarity=0.213 Sum_probs=27.9
Q ss_pred CCcEEEEEechhhH-HHHHHHHHHHhcCCcEEEeecC
Q 004946 588 GKDVALLGYGAMVQ-NCLKARALLSKLGIDVTVADAR 623 (722)
Q Consensus 588 G~dv~lva~Gs~v~-~aleAa~~L~~~Gi~v~Vidl~ 623 (722)
..|++||++|.... .--+..+.|+++||.+++.|-+
T Consensus 67 ~pevliiGTG~~~~~l~p~l~~~l~~~GI~vE~M~T~ 103 (135)
T 2fvt_A 67 AIDTLIVGTGADVWIAPRQLREALRGVNVVLDTMQTG 103 (135)
T ss_dssp SCSEEEEECTTSCCCCCHHHHHHHHTTTCEEEEECHH
T ss_pred CCCEEEEcCCCCCCcCCHHHHHHHHHcCCEEEEeCHH
Confidence 37999999998663 2235567788999999999865
No 151
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=26.54 E-value=1.3e+02 Score=26.19 Aligned_cols=33 Identities=18% Similarity=0.110 Sum_probs=25.3
Q ss_pred CCcEEEEEechhhHHHHHHHHHHHhcCCcEEEeecC
Q 004946 588 GKDVALLGYGAMVQNCLKARALLSKLGIDVTVADAR 623 (722)
Q Consensus 588 G~dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~ 623 (722)
...++|+++|.+.. ..++.|.++|.++.++|..
T Consensus 6 ~~~v~I~G~G~iG~---~la~~L~~~g~~V~~id~~ 38 (141)
T 3llv_A 6 RYEYIVIGSEAAGV---GLVRELTAAGKKVLAVDKS 38 (141)
T ss_dssp CCSEEEECCSHHHH---HHHHHHHHTTCCEEEEESC
T ss_pred CCEEEEECCCHHHH---HHHHHHHHCCCeEEEEECC
Confidence 45799999988544 4566777889999999864
No 152
>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*
Probab=25.88 E-value=1.6e+02 Score=23.98 Aligned_cols=65 Identities=18% Similarity=0.224 Sum_probs=40.1
Q ss_pred cEEEEEechhhHHHHHHHHHHHhcCCc---EEEeecCccc--cchHHHHHHHhc-CCCeEEEEcCCCCCChH
Q 004946 590 DVALLGYGAMVQNCLKARALLSKLGID---VTVADARFCK--PLDIKLVRELCQ-NHTFLITVEEGSIGGFG 655 (722)
Q Consensus 590 dv~lva~Gs~v~~aleAa~~L~~~Gi~---v~Vidl~~lk--Pld~e~i~~~~~-~~~~vvvvEe~~~gG~g 655 (722)
.+++++ -+....|..+...|++.+++ ..++|+..-. |--.+.+.+... .+=..++++....||+.
T Consensus 13 ~v~~f~-~~~C~~C~~~~~~L~~~~~~~~~~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~i~~~g~~i~g~~ 83 (105)
T 1kte_A 13 KVVVFI-KPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTGARTVPRVFIGKECIGGCT 83 (105)
T ss_dssp CEEEEE-CSSCHHHHHHHHHHHHSCBCTTSEEEEEGGGSTTHHHHHHHHHHHHSCCCSCEEEETTEEEESHH
T ss_pred CEEEEE-cCCCHhHHHHHHHHHHcCCCCCccEEEEccCCCCHHHHHHHHHHHhCCCCcCeEEECCEEEeccH
Confidence 566654 45668899999999999999 9999886421 100123333332 22245666554578875
No 153
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=25.86 E-value=1.5e+02 Score=31.73 Aligned_cols=71 Identities=14% Similarity=-0.027 Sum_probs=45.6
Q ss_pred EEEEechhhH----HHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcCCCeEEEEcCCCCCChHHHHHHHH
Q 004946 592 ALLGYGAMVQ----NCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFI 662 (722)
Q Consensus 592 ~lva~Gs~v~----~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~~~vvvvEe~~~gG~gs~v~~~l 662 (722)
++|.|+||.. .|...++.|+++|+.+.++++.-+..-|...+.+.+.+.+.+++-=.-+.|++-..+..++
T Consensus 268 v~I~Y~S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d~~~~~~s~i~~~i~~~~~ivlGspT~~~~~~p~~~~~l 342 (410)
T 4dik_A 268 VTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEERPAISEILKDIPDSEALIFGVSTYEAEIHPLMRFTL 342 (410)
T ss_dssp EEEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSCCCCHHHHHHHSTTCSEEEEEECCTTSSSCHHHHHHH
T ss_pred eeeEEecccChHHHHHHHHHHHHHhcCCceEEEEeccCCCCCHHHHHHHHHhCCeEEEEeCCcCCcCCHHHHHHH
Confidence 3455677653 4555666777889999888888777667666666666777776644433455544444333
No 154
>2gm2_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Xanthomonas campestris PV}
Probab=25.79 E-value=24 Score=31.86 Aligned_cols=37 Identities=24% Similarity=0.189 Sum_probs=28.9
Q ss_pred eCCcEEEEEechhhH-HHHHHHHHHHhcCCcEEEeecC
Q 004946 587 EGKDVALLGYGAMVQ-NCLKARALLSKLGIDVTVADAR 623 (722)
Q Consensus 587 eG~dv~lva~Gs~v~-~aleAa~~L~~~Gi~v~Vidl~ 623 (722)
.+.|++||++|.... .--+..+.|+++||.+++.|-+
T Consensus 63 ~~pevliiGTG~~~~~l~p~~~~~l~~~GI~vE~m~T~ 100 (132)
T 2gm2_A 63 LNPAVILLGTGERQQFPSTDVLAACLTRGIGLEAMTNA 100 (132)
T ss_dssp HCCSEEEEECTTSCCCCCHHHHHHHHHHTCEEEEECHH
T ss_pred cCCCEEEECCCCCCCcCCHHHHHHHHHcCCEEEEeCHH
Confidence 357999999998763 3344567788899999999865
No 155
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=24.48 E-value=2.9e+02 Score=24.13 Aligned_cols=61 Identities=11% Similarity=0.022 Sum_probs=36.7
Q ss_pred chhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhc-CCCeEEEEcCCC-C--CChHHHHHHHHHh
Q 004946 597 GAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQ-NHTFLITVEEGS-I--GGFGSHVSHFIAL 664 (722)
Q Consensus 597 Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~-~~~~vvvvEe~~-~--gG~gs~v~~~l~~ 664 (722)
|+.-..|...++.|++.|++++++|+....+-+ +. +.+.+|+.=.-+ . |.+-..+..++..
T Consensus 13 GnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~-------l~~~~d~ii~g~pty~~~~G~~p~~~~~fl~~ 77 (148)
T 3f6r_A 13 GNTESIAQKLEELIAAGGHEVTLLNAADASAEN-------LADGYDAVLFGCSAWGMEDLEMQDDFLSLFEE 77 (148)
T ss_dssp SHHHHHHHHHHHHHHTTTCEEEEEETTTBCCTT-------TTTTCSEEEEEECEECSSSCEECHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHhCCCeEEEEehhhCCHhH-------hcccCCEEEEEecccCCCCCCCcHHHHHHHHH
Confidence 334445555666677779999999988654322 22 556666654433 2 4566666666653
No 156
>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}
Probab=24.08 E-value=80 Score=27.71 Aligned_cols=49 Identities=20% Similarity=0.203 Sum_probs=38.2
Q ss_pred EEEEEechhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcCCC
Q 004946 591 VALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHT 641 (722)
Q Consensus 591 v~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~~ 641 (722)
|+|.+ -.....|.+|.+.|+++|+..+++|+.. .|.+.+.+.++++..+
T Consensus 7 i~iY~-~p~C~~c~ka~~~L~~~gi~~~~~di~~-~~~~~~eL~~~l~~~g 55 (121)
T 3rdw_A 7 VTIYH-NPRCSKSRETLALVEQQGITPQVVLYLE-TPPSVDKLKELLQQLG 55 (121)
T ss_dssp CEEEC-CTTCHHHHHHHHHHHTTTCCCEEECTTT-SCCCHHHHHHHHHHTT
T ss_pred EEEEE-CCCCHHHHHHHHHHHHcCCCcEEEeecc-CCCcHHHHHHHHHhcC
Confidence 44433 3456799999999999999999999975 6788888887776543
No 157
>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B
Probab=23.48 E-value=1.9e+02 Score=24.39 Aligned_cols=66 Identities=17% Similarity=0.224 Sum_probs=40.3
Q ss_pred CcEEEEEechhhHHHHHHHHHHHhcCCc---EEEeecCccccc---hHHHHHHHhc-CCCeEEEEcCCCCCChHH
Q 004946 589 KDVALLGYGAMVQNCLKARALLSKLGID---VTVADARFCKPL---DIKLVRELCQ-NHTFLITVEEGSIGGFGS 656 (722)
Q Consensus 589 ~dv~lva~Gs~v~~aleAa~~L~~~Gi~---v~Vidl~~lkPl---d~e~i~~~~~-~~~~vvvvEe~~~gG~gs 656 (722)
..|++++ -+....|..+...|++.|+. ...+|+..- |- ..+.+.+... .+=..++++....||+..
T Consensus 19 ~~vv~f~-~~~Cp~C~~~~~~L~~~~~~~~~~~~vdi~~~-~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~ 91 (114)
T 2hze_A 19 NKVTIFV-KYTCPFCRNALDILNKFSFKRGAYEIVDIKEF-KPENELRDYFEQITGGKTVPRIFFGKTSIGGYSD 91 (114)
T ss_dssp TCEEEEE-CTTCHHHHHHHHHHTTSCBCTTSEEEEEGGGS-SSHHHHHHHHHHHHSCCSSCEEEETTEEEESHHH
T ss_pred CCEEEEE-eCCChhHHHHHHHHHHcCCCcCceEEEEccCC-CChHHHHHHHHHHhCCCCcCEEEECCEEEeCcHH
Confidence 3465554 45668899999999999999 999998642 20 0123333332 222455665444788753
No 158
>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0
Probab=23.46 E-value=1e+02 Score=27.01 Aligned_cols=47 Identities=15% Similarity=0.075 Sum_probs=37.0
Q ss_pred EEEEEechhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcC
Q 004946 591 VALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQN 639 (722)
Q Consensus 591 v~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~ 639 (722)
|+|.+ -.....|.+|.+.|+++|+..+++|+.. .|.+.+.+.++++.
T Consensus 6 i~iY~-~p~C~~c~ka~~~L~~~gi~~~~~di~~-~~~~~~eL~~~l~~ 52 (120)
T 3gkx_A 6 TLFLQ-YPACSTCQKAKKWLIENNIEYTNRLIVD-DNPTVEELKAWIPL 52 (120)
T ss_dssp CEEEE-CTTCHHHHHHHHHHHHTTCCCEEEETTT-TCCCHHHHHHHHHH
T ss_pred EEEEE-CCCChHHHHHHHHHHHcCCceEEEeccc-CcCCHHHHHHHHHH
Confidence 34433 4556799999999999999999999975 67788888777654
No 159
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=23.29 E-value=70 Score=28.71 Aligned_cols=37 Identities=16% Similarity=0.165 Sum_probs=30.6
Q ss_pred CCcEEEEEechhhHHHHHHHHHHHhcCCcEEEeecCc
Q 004946 588 GKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARF 624 (722)
Q Consensus 588 G~dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~ 624 (722)
..++++||-|+.....+..++.|.+.|.++.++-.|+
T Consensus 18 ~~~~llIaGG~GiaPl~sm~~~l~~~~~~v~l~g~R~ 54 (142)
T 3lyu_A 18 FGKILAIGAYTGIVEVYPIAKAWQEIGNDVTTLHVTF 54 (142)
T ss_dssp CSEEEEEEETTHHHHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred CCeEEEEECcCcHHHHHHHHHHHHhcCCcEEEEEeCC
Confidence 4689999999999999999998888888888883343
No 160
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=23.10 E-value=62 Score=30.34 Aligned_cols=58 Identities=16% Similarity=0.121 Sum_probs=33.9
Q ss_pred HHHHHHhcCCcEEEeecCccccc-----------hHHHHHHHhcCCCeEEEEcCCCCCChHHHHHHHHHh
Q 004946 606 ARALLSKLGIDVTVADARFCKPL-----------DIKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIAL 664 (722)
Q Consensus 606 Aa~~L~~~Gi~v~Vidl~~lkPl-----------d~e~i~~~~~~~~~vvvvEe~~~gG~gs~v~~~l~~ 664 (722)
+++.|+ .|.+++++|+.-+..+ |.+.+.+.+...+.||+.=.-+.+++...+..++..
T Consensus 29 i~~~l~-~g~~v~~~dl~~~p~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~~sP~y~~~~p~~lK~~iD~ 97 (193)
T 1rtt_A 29 AIGLVP-PGMSIELADISGIPLYNEDVYALGFPPAVERFREQIRAADALLFATPEYNYSMAGVLKNAIDW 97 (193)
T ss_dssp HHTTCC-TTCEEEECCCTTCCCCCHHHHTTCCCHHHHHHHHHHHHCSEEEEECCEETTEECHHHHHHHHH
T ss_pred HHHhcc-CCCeEEEEeHHHCCCCCccccccCCCHHHHHHHHHHHhCCEEEEEccccccCcCHHHHHHHHH
Confidence 333344 5889999998764322 223444555666777766554445666666555543
No 161
>2e85_A Hydrogenase 3 maturation protease; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Escherichia coli} PDB: 2i8l_A
Probab=23.08 E-value=2.5e+02 Score=25.73 Aligned_cols=57 Identities=23% Similarity=0.124 Sum_probs=37.8
Q ss_pred cEEEEEechhhH----HHHHHHHHHHhcC-CcEEEeecCccccchHHHHHHHhcCCCeEEEEcC
Q 004946 590 DVALLGYGAMVQ----NCLKARALLSKLG-IDVTVADARFCKPLDIKLVRELCQNHTFLITVEE 648 (722)
Q Consensus 590 dv~lva~Gs~v~----~aleAa~~L~~~G-i~v~Vidl~~lkPld~e~i~~~~~~~~~vvvvEe 648 (722)
+++|+++|+.+. .-..+++.|++.. -+++++|.-+.-+--...+.+. +.+++|+|+-
T Consensus 5 ~~lVlGiGN~l~gDDG~G~~v~~~L~~~~~~~v~vid~gt~~~~l~~~l~~~--~~d~lIiVDA 66 (159)
T 2e85_A 5 TDVLLCVGNSMMGDDGAGPLLAEKCAAAPKGNWVVIDGGSAPENDIVAIREL--RPTRLLIVDA 66 (159)
T ss_dssp CEEEEEECCGGGGGGGHHHHHHHHHHHSCCTTCEEEECTTCSGGGHHHHHHH--CCSEEEEEEE
T ss_pred CEEEEEECCcccccccHHHHHHHHHhhhCCCCeEEEECCCCHHHHHHHHhcC--CCCEEEEEEe
Confidence 478999999863 4667788887652 3588999988644222333322 4678888875
No 162
>1z3e_A Regulatory protein SPX; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: c.47.1.12 PDB: 3gfk_A 3ihq_A
Probab=22.88 E-value=1.6e+02 Score=25.96 Aligned_cols=47 Identities=26% Similarity=0.359 Sum_probs=36.6
Q ss_pred EEEEEechhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcC
Q 004946 591 VALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQN 639 (722)
Q Consensus 591 v~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~ 639 (722)
|+|.+ -+....|.+|.+.|++.|+..+++|+.. .|.+.+.+.++++.
T Consensus 3 i~lY~-~~~C~~C~ka~~~L~~~gi~y~~~di~~-~~~~~~el~~~l~~ 49 (132)
T 1z3e_A 3 VTLYT-SPSCTSCRKARAWLEEHEIPFVERNIFS-EPLSIDEIKQILRM 49 (132)
T ss_dssp EEEEE-CTTCHHHHHHHHHHHHTTCCEEEEETTT-SCCCHHHHHHHHHT
T ss_pred EEEEe-CCCChHHHHHHHHHHHcCCceEEEEccC-CCccHHHHHHHHHH
Confidence 44443 4566899999999999999999999974 57777778777754
No 163
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=22.45 E-value=1.3e+02 Score=35.85 Aligned_cols=72 Identities=11% Similarity=0.043 Sum_probs=46.5
Q ss_pred HHHHHhcCCCC---EEEEEeCCCccCCCCCCc-----CcHHHHHHhcCCCCcEEEeeCCHHHHHHHHHHHhh---hCCCC
Q 004946 485 VVNDVDQQRLP---VRFVITSAGLVGSDGPTQ-----CGAFDITFMSCLPNMIVMAPSDEDELVDMVATVAS---IDDRP 553 (722)
Q Consensus 485 i~~~~a~~~lp---Vv~v~~~~G~~G~dG~TH-----~~~~d~a~~~~iP~l~V~~Psd~~E~~~~l~~a~~---~~~~P 553 (722)
-++.++..++| +++++.+.++ |-.+++. ....|.+-.-.+|.+.| .=.|+.++...++.|++ ..++|
T Consensus 298 aln~A~~~~lp~g~vi~iv~NN~~-g~st~~~~~~s~~~~~~~a~a~G~p~~~V-dG~D~~av~~a~~~A~~~ar~~~~P 375 (868)
T 2yic_A 298 TLNLALLRGYRTGGTIHIVVNNQI-GFTTAPTDSRSSEYCTDVAKMIGAPIFHV-NGDDPEACAWVARLAVDFRQAFKKD 375 (868)
T ss_dssp HHTTTTCTTTCCSCCEEEEEECSC-BTTBCHHHHCSSSSTTGGGGGGTCCEEEE-ETTCHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHhcCCCCCCeEEEEEcCCc-ccccCccccccccCHHHHHHhCCCcEEEE-eCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 35778889998 9998866654 3233322 12334444445665543 44589999999999875 24789
Q ss_pred EEEEe
Q 004946 554 VCFRY 558 (722)
Q Consensus 554 v~ir~ 558 (722)
++|-.
T Consensus 376 vlIe~ 380 (868)
T 2yic_A 376 VVIDM 380 (868)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99854
No 164
>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12
Probab=22.01 E-value=98 Score=26.61 Aligned_cols=48 Identities=23% Similarity=0.312 Sum_probs=36.5
Q ss_pred EEEEEechhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHHHHHhcCC
Q 004946 591 VALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNH 640 (722)
Q Consensus 591 v~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i~~~~~~~ 640 (722)
|+|.+ -+....|.+|.+.|+++|+..+++|+.. .|++.+.+.+.++..
T Consensus 2 i~iY~-~~~C~~C~kak~~L~~~gi~~~~~di~~-~~~~~~~l~~~~~~~ 49 (114)
T 1rw1_A 2 YVLYG-IKACDTMKKARTWLDEHKVAYDFHDYKA-VGIDREHLRRWCAEH 49 (114)
T ss_dssp EEEEE-CSSCHHHHHHHHHHHHTTCCEEEEEHHH-HCCCHHHHHHHHHHH
T ss_pred EEEEE-CCCChHHHHHHHHHHHCCCceEEEeecC-CCCCHHHHHHHHHhC
Confidence 44444 3556889999999999999999999863 577778777766543
No 165
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=21.72 E-value=1.1e+02 Score=29.82 Aligned_cols=84 Identities=10% Similarity=0.015 Sum_probs=47.3
Q ss_pred cEEEEEechhhHHHHHHHHHHHh---cCCcEEEeecCccccchHHHHHHHhcCCCeEEEEcCCC-CCCh---HHHHHHHH
Q 004946 590 DVALLGYGAMVQNCLKARALLSK---LGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-IGGF---GSHVSHFI 662 (722)
Q Consensus 590 dv~lva~Gs~v~~aleAa~~L~~---~Gi~v~Vidl~~lkPld~e~i~~~~~~~~~vvvvEe~~-~gG~---gs~v~~~l 662 (722)
.-++|-|||+...+.+.|+.|.+ .|+.+.|+++.-..+- + +.+.+.+|++=..+ .|-+ ...+.+.|
T Consensus 41 ~kv~IlYgS~tGnte~~A~~La~~l~~g~~v~v~~l~~~~~~------~-l~~~~~vI~~tsTyG~Ge~Pdna~~F~~~L 113 (219)
T 3hr4_A 41 VRVTILFATETGKSEALAWDLGALFSCAFNPKVVCMDKYRLS------C-LEEERLLLVVTSTFGNGDCPGNGEKLKKSL 113 (219)
T ss_dssp CEEEEEEECSSSHHHHHHHHHHHHHTTTSEEEEEEGGGCCGG------G-GGTCSEEEEEEECBTTTBCCGGGHHHHHHH
T ss_pred CcEEEEEECCchHHHHHHHHHHHHHHcCCCeEEEEcccCCHh------H-hccCCeEEEEEeccCCCcCCHHHHHHHHHH
Confidence 34567799999888888887754 4888999988754331 1 23445566554332 2222 22344445
Q ss_pred HhcC-CCCCCCceEEEecCC
Q 004946 663 ALDG-LLDSGVKWRPIVLPD 681 (722)
Q Consensus 663 ~~~~-~~~~~~~v~~ig~~d 681 (722)
.... .+ ...++-.+|+-|
T Consensus 114 ~~~~~~l-~~~~~aVfGlGd 132 (219)
T 3hr4_A 114 FMLKELN-NKFRYAVFGLGS 132 (219)
T ss_dssp HHCCCCS-SCCEEEEEEEEC
T ss_pred Hhcchhh-cCCEEEEEeCCC
Confidence 4432 11 134566666533
No 166
>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}
Probab=21.46 E-value=1.2e+02 Score=25.08 Aligned_cols=66 Identities=20% Similarity=0.243 Sum_probs=42.2
Q ss_pred CcEEEEEechhhHHHHHHHHHHHhcCCcEEEeecCccccchHHHH-HHHhc----CCCeEEEEcC-CCCCChH
Q 004946 589 KDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLV-RELCQ----NHTFLITVEE-GSIGGFG 655 (722)
Q Consensus 589 ~dv~lva~Gs~v~~aleAa~~L~~~Gi~v~Vidl~~lkPld~e~i-~~~~~----~~~~vvvvEe-~~~gG~g 655 (722)
.+++|.+ -+....|..|...|++.|+..+.+|+....+-+.+.+ .++.+ .+=.++++++ ...||+.
T Consensus 22 ~~v~ly~-~~~Cp~C~~ak~~L~~~~i~y~~vdI~~~~~~~~~~~~~~l~~~~g~~~vP~l~i~~~~~igg~~ 93 (103)
T 3nzn_A 22 GKVIMYG-LSTCVWCKKTKKLLTDLGVDFDYVYVDRLEGKEEEEAVEEVRRFNPSVSFPTTIINDEKAIVGFK 93 (103)
T ss_dssp SCEEEEE-CSSCHHHHHHHHHHHHHTBCEEEEEGGGCCHHHHHHHHHHHHHHCTTCCSCEEEETTTEEEESCC
T ss_pred CeEEEEc-CCCCchHHHHHHHHHHcCCCcEEEEeeccCcccHHHHHHHHHHhCCCCccCEEEECCCEEEEcCC
Confidence 3566654 4566899999999999999999999886544332222 22221 2235677776 3367775
No 167
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=21.01 E-value=2.3e+02 Score=26.66 Aligned_cols=35 Identities=23% Similarity=0.150 Sum_probs=24.8
Q ss_pred CcEEEEEech-hhHHHHHHHHHHHhcCCc--EEEeecC
Q 004946 589 KDVALLGYGA-MVQNCLKARALLSKLGID--VTVADAR 623 (722)
Q Consensus 589 ~dv~lva~Gs-~v~~aleAa~~L~~~Gi~--v~Vidl~ 623 (722)
.+|.||.-|. -...+.+|++.|++-|+. ++|+++.
T Consensus 8 ~~V~IimgS~SD~~v~~~a~~~L~~~gi~~ev~V~SaH 45 (174)
T 3lp6_A 8 PRVGVIMGSDSDWPVMADAAAALAEFDIPAEVRVVSAH 45 (174)
T ss_dssp CSEEEEESCGGGHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CeEEEEECcHHhHHHHHHHHHHHHHcCCCEEEEEECCC
Confidence 3577666554 367899999999998885 5555554
No 168
>1cfz_A Hydrogenase 2 maturation protease; metzincins, nickel; 2.20A {Escherichia coli} SCOP: c.56.1.1 PDB: 2kml_A
Probab=20.53 E-value=1.1e+02 Score=28.26 Aligned_cols=56 Identities=18% Similarity=0.161 Sum_probs=39.3
Q ss_pred cEEEEEechhh----HHHHHHHHHHHhc-C--CcEEEeecCccccchHHHHHHHhcCCCeEEEEcCC
Q 004946 590 DVALLGYGAMV----QNCLKARALLSKL-G--IDVTVADARFCKPLDIKLVRELCQNHTFLITVEEG 649 (722)
Q Consensus 590 dv~lva~Gs~v----~~aleAa~~L~~~-G--i~v~Vidl~~lkPld~e~i~~~~~~~~~vvvvEe~ 649 (722)
+++|+++|+.+ ..-..+++.|+++ . -+++++|.-+.-+ +.+ ..+...+++|+|+.-
T Consensus 2 ~ilVlGiGN~l~gDDG~G~~v~~~L~~~~~~p~~v~vid~gt~~~---~l~-~~l~~~d~lIiVDA~ 64 (162)
T 1cfz_A 2 RILVLGVGNILLTDEAIGVRIVEALEQRYILPDYVEILDGGTAGM---ELL-GDMANRDHLIIADAI 64 (162)
T ss_dssp CEEEEEESCTTBGGGGHHHHHHHHHHHHEECCTTEEEEEEETCCG---GGH-HHHSSCSEEEEEEEC
T ss_pred CEEEEEECCcccccccHHHHHHHHHHhhCCCCCCeEEEECCCCHH---HHH-HHHhCCCEEEEEEeh
Confidence 57899999976 3466778888764 3 3689999988532 233 344567888888864
No 169
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=20.33 E-value=2e+02 Score=26.92 Aligned_cols=62 Identities=13% Similarity=0.037 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhcCCcEEEeecCccccch----------HHHHHHHhcCCCeEEEEcCCCCCChHHHHHHHHH
Q 004946 601 QNCLKARALLSKLGIDVTVADARFCKPLD----------IKLVRELCQNHTFLITVEEGSIGGFGSHVSHFIA 663 (722)
Q Consensus 601 ~~aleAa~~L~~~Gi~v~Vidl~~lkPld----------~e~i~~~~~~~~~vvvvEe~~~gG~gs~v~~~l~ 663 (722)
..+..+++.++ .|.+++++|+.-+-.++ .+.+.+.+...+.+|+.=.-+.+++...+..++.
T Consensus 20 ~la~~~~~~~~-~~~~v~~~dl~~lp~~~~~~~~~~~~~~~~~~~~i~~AD~iV~~sP~y~~~~p~~lK~~iD 91 (192)
T 3fvw_A 20 QLAKKAETIIG-DRAQVSYLSYDRVPFFNQDLETSVHPEVAHAREEVQEADAIWIFSPVYNYAIPGPVKNLLD 91 (192)
T ss_dssp HHHHHHHHHHT-TSSEEEECCCSSCCCCCGGGTTSCCHHHHHHHHHHHHCSEEEEECCCBTTBCCHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCEEEEEeCccCCCCCcccccCCcHHHHHHHHHHHhCCEEEEECcccccCCCHHHHHHHH
Confidence 34445555665 68999999997542222 2445566677788887766555666655555553
Done!