Query 004947
Match_columns 722
No_of_seqs 452 out of 2642
Neff 6.4
Searched_HMMs 46136
Date Thu Mar 28 15:32:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004947.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004947hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0944 Ubiquitin-specific pro 100.0 3E-53 6.5E-58 468.0 14.1 305 363-718 220-546 (763)
2 KOG1865 Ubiquitin carboxyl-ter 100.0 6.2E-48 1.3E-52 422.9 14.4 250 455-711 89-339 (545)
3 COG5207 UBP14 Isopeptidase T [ 100.0 2.9E-42 6.3E-47 369.7 14.2 294 363-700 213-519 (749)
4 cd02663 Peptidase_C19G A subfa 100.0 3.9E-40 8.4E-45 352.2 21.1 211 479-711 1-224 (300)
5 cd02660 Peptidase_C19D A subfa 100.0 1.4E-39 3E-44 351.0 22.0 230 478-711 1-251 (328)
6 cd02661 Peptidase_C19E A subfa 100.0 1.7E-39 3.6E-44 345.1 20.6 234 477-711 1-235 (304)
7 cd02671 Peptidase_C19O A subfa 100.0 1.9E-39 4.1E-44 351.6 20.2 210 474-710 21-260 (332)
8 cd02668 Peptidase_C19L A subfa 100.0 5.7E-39 1.2E-43 346.8 21.7 219 479-711 1-233 (324)
9 cd02658 Peptidase_C19B A subfa 100.0 1.3E-38 2.9E-43 341.3 22.5 214 479-708 1-247 (311)
10 cd02664 Peptidase_C19H A subfa 100.0 4E-38 8.6E-43 340.9 19.7 207 479-713 1-213 (327)
11 cd02669 Peptidase_C19M A subfa 100.0 5.3E-38 1.2E-42 352.5 21.3 283 367-718 53-369 (440)
12 cd02657 Peptidase_C19A A subfa 100.0 2.9E-37 6.2E-42 329.9 20.2 218 479-711 1-232 (305)
13 cd02667 Peptidase_C19K A subfa 100.0 4.1E-37 8.8E-42 325.8 16.2 178 479-711 1-184 (279)
14 COG5560 UBP12 Ubiquitin C-term 100.0 1.4E-37 3.1E-42 341.2 9.9 243 475-721 263-756 (823)
15 COG5533 UBP5 Ubiquitin C-termi 100.0 6.5E-37 1.4E-41 313.2 14.0 219 473-692 67-318 (415)
16 cd02659 peptidase_C19C A subfa 100.0 9.5E-36 2E-40 321.9 20.4 222 476-711 1-228 (334)
17 cd02662 Peptidase_C19F A subfa 100.0 4.7E-32 1E-36 281.2 16.2 161 479-721 1-169 (240)
18 KOG1868 Ubiquitin C-terminal h 100.0 2.3E-30 5E-35 296.2 6.0 220 475-694 299-555 (653)
19 cd02674 Peptidase_C19R A subfa 100.0 3.5E-29 7.6E-34 256.1 11.5 146 479-705 1-153 (230)
20 cd02666 Peptidase_C19J A subfa 99.9 3.4E-28 7.3E-33 264.3 12.1 181 477-688 1-216 (343)
21 KOG1866 Ubiquitin carboxyl-ter 99.9 1.2E-28 2.6E-33 274.7 3.7 231 475-720 93-327 (944)
22 cd02673 Peptidase_C19Q A subfa 99.9 7.6E-27 1.7E-31 243.0 13.8 159 480-694 2-161 (245)
23 COG5077 Ubiquitin carboxyl-ter 99.9 2.7E-27 5.9E-32 264.1 4.3 278 416-710 126-413 (1089)
24 KOG1863 Ubiquitin carboxyl-ter 99.9 4.2E-26 9.1E-31 278.9 11.4 275 416-709 110-392 (1093)
25 PF00443 UCH: Ubiquitin carbox 99.9 7.8E-26 1.7E-30 232.7 11.1 183 477-712 1-196 (269)
26 cd02665 Peptidase_C19I A subfa 99.9 4.3E-25 9.3E-30 226.8 10.3 157 479-708 1-159 (228)
27 KOG1867 Ubiquitin-specific pro 99.9 8E-25 1.7E-29 246.4 11.2 234 475-710 159-409 (492)
28 cd02257 Peptidase_C19 Peptidas 99.9 8.5E-24 1.8E-28 214.0 13.4 166 479-711 1-174 (255)
29 KOG1873 Ubiquitin-specific pro 99.9 4.8E-24 1E-28 239.1 8.0 159 475-634 203-400 (877)
30 KOG4598 Putative ubiquitin-spe 99.9 5.9E-24 1.3E-28 235.0 1.7 197 475-710 85-290 (1203)
31 KOG1870 Ubiquitin C-terminal h 99.9 3.3E-23 7.1E-28 248.0 7.7 160 475-634 244-427 (842)
32 PF13423 UCH_1: Ubiquitin carb 99.9 8.6E-22 1.9E-26 210.4 17.2 227 478-711 1-235 (295)
33 cd02672 Peptidase_C19P A subfa 99.8 4.9E-22 1.1E-26 209.6 5.1 159 469-693 7-173 (268)
34 KOG1871 Ubiquitin-specific pro 99.8 4.1E-19 8.9E-24 188.4 7.0 239 475-718 26-344 (420)
35 KOG1864 Ubiquitin-specific pro 99.8 4.7E-19 1E-23 203.0 7.6 234 477-710 232-497 (587)
36 KOG2026 Spindle pole body prot 99.7 1.6E-16 3.5E-21 168.2 16.1 211 475-712 132-363 (442)
37 KOG1872 Ubiquitin-specific pro 99.6 8.8E-16 1.9E-20 167.1 2.1 207 475-694 103-320 (473)
38 cd02670 Peptidase_C19N A subfa 99.4 1E-13 2.2E-18 144.1 7.2 127 479-712 1-133 (241)
39 PF01753 zf-MYND: MYND finger; 98.9 6.2E-10 1.3E-14 82.3 1.4 37 103-140 1-37 (37)
40 KOG1275 PAB-dependent poly(A) 98.7 2.3E-08 4.9E-13 116.0 6.6 216 469-693 491-736 (1118)
41 KOG1710 MYND Zn-finger and ank 98.5 9.6E-09 2.1E-13 106.2 -1.1 43 100-143 319-362 (396)
42 KOG1864 Ubiquitin-specific pro 97.2 0.00033 7.1E-09 81.7 4.2 100 480-579 34-152 (587)
43 KOG3612 PHD Zn-finger protein 96.6 0.00098 2.1E-08 74.9 1.8 42 101-145 528-569 (588)
44 PF15499 Peptidase_C98: Ubiqui 94.4 0.028 6E-07 58.5 3.0 175 481-687 6-198 (275)
45 KOG2061 Uncharacterized MYND Z 93.5 0.053 1.1E-06 59.2 3.1 52 96-147 132-183 (362)
46 PLN03158 methionine aminopepti 92.6 0.082 1.8E-06 59.4 3.1 42 98-140 7-55 (396)
47 PF13824 zf-Mss51: Zinc-finger 89.1 0.35 7.6E-06 39.0 2.7 43 102-145 1-47 (55)
48 PF05408 Peptidase_C28: Foot-a 84.5 0.44 9.5E-06 47.5 1.1 22 477-498 33-54 (193)
49 PF04438 zf-HIT: HIT zinc fing 81.8 0.74 1.6E-05 32.6 1.1 28 101-129 3-30 (30)
50 KOG3362 Predicted BBOX Zn-fing 78.5 0.96 2.1E-05 43.2 1.1 36 97-133 115-150 (156)
51 PF08715 Viral_protease: Papai 76.8 6.3 0.00014 43.1 6.9 74 479-576 104-178 (320)
52 KOG2857 Predicted MYND Zn-fing 68.2 2.6 5.7E-05 40.2 1.3 38 100-143 5-45 (157)
53 COG3478 Predicted nucleic-acid 62.9 7.1 0.00015 32.5 2.7 36 657-692 3-40 (68)
54 PF14353 CpXC: CpXC protein 52.7 15 0.00032 34.5 3.5 49 610-669 1-49 (128)
55 PF09889 DUF2116: Uncharacteri 50.1 11 0.00024 31.0 1.9 32 100-138 3-34 (59)
56 PRK01343 zinc-binding protein; 48.8 15 0.00033 30.0 2.4 29 100-133 9-37 (57)
57 TIGR02976 phageshock_pspB phag 47.7 34 0.00074 29.5 4.5 26 9-34 8-34 (75)
58 PRK09458 pspB phage shock prot 46.6 30 0.00066 29.8 4.0 41 9-49 8-53 (75)
59 KOG4317 Predicted Zn-finger pr 44.5 10 0.00022 40.9 1.0 36 101-142 8-44 (383)
60 KOG3556 Familial cylindromatos 43.7 42 0.00092 38.7 5.7 24 477-500 368-391 (724)
61 KOG1871 Ubiquitin-specific pro 39.1 12 0.00026 41.7 0.6 109 475-584 176-319 (420)
62 PF06667 PspB: Phage shock pro 39.0 65 0.0014 27.9 4.9 39 11-49 11-53 (75)
63 KOG2738 Putative methionine am 37.8 16 0.00034 39.4 1.2 41 100-141 6-53 (369)
64 PLN03144 Carbon catabolite rep 34.8 25 0.00054 41.9 2.3 39 101-140 60-109 (606)
65 PF09855 DUF2082: Nucleic-acid 32.2 42 0.00091 28.1 2.6 34 659-692 1-36 (64)
66 PF12855 Ecl1: Life-span regul 26.4 28 0.0006 26.9 0.5 30 101-133 7-36 (43)
67 PRK03824 hypA hydrogenase nick 26.3 2.9E+02 0.0062 26.4 7.6 51 606-667 66-116 (135)
68 PF13719 zinc_ribbon_5: zinc-r 25.0 42 0.00092 24.7 1.3 21 102-122 4-36 (37)
69 PF10013 DUF2256: Uncharacteri 24.2 22 0.00048 27.2 -0.3 29 101-129 9-40 (42)
70 PRK13275 mtrF tetrahydromethan 23.5 62 0.0013 27.4 2.1 18 11-28 50-67 (67)
71 PF13717 zinc_ribbon_4: zinc-r 22.4 46 0.001 24.4 1.1 21 102-122 4-36 (36)
72 TIGR02507 MtrF tetrahydrometha 20.9 62 0.0013 27.2 1.6 16 11-26 50-65 (65)
73 PRK10370 formate-dependent nit 20.8 1.1E+02 0.0023 30.9 3.8 26 12-37 14-39 (198)
No 1
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-53 Score=468.01 Aligned_cols=305 Identities=22% Similarity=0.257 Sum_probs=263.0
Q ss_pred ccccccCCCCcccccccCCccceeeccccchhhhcCCCCCchhhhhhccCCCCCCccccccccCchhhcccccccccccc
Q 004947 363 YCEMKAMNPMGTKNCKSAKSCTKVVGDQSCLEKERKGPIADESKAARVRDTIPAQGSNVVSKMGIMKMMGLRKSTKLRQD 442 (722)
Q Consensus 363 ~~~~~~~~p~~~k~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~~~s~p~~~~~hL~~~GI~k~~~l~~~~Kteks 442 (722)
|+++ .|||.||||||++.|+|||||.|++++ .+| +...||+||||| +..+.||+|+
T Consensus 220 Yr~t--ghPLaVKLgsIs~dg~DvycY~cDd~v-----------------~dP-nl~~hl~hfGId----~~~m~kteks 275 (763)
T KOG0944|consen 220 YRET--GHPLAVKLGSISPDGADVYCYDCDDEV-----------------RDP-NLESHLSHFGID----MAKMDKTEKS 275 (763)
T ss_pred hhhc--CCceEEEecccCCCccceeeecccccc-----------------cCc-cHHHHHHhcCcc----HHHhccchhH
Confidence 5554 599999999999999999888887732 244 899999999999 9999999999
Q ss_pred hhhhhhhhcccceecccc---chhhhccccccccCcCCcCcccCCCcchHHHHHHHHhcCHHHHHHHHhcc--cCCcCCC
Q 004947 443 SSELWHDQHRKLKMLFPY---EEFLKLFQYEVIDLLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRS--HSSACCG 517 (722)
Q Consensus 443 l~El~~e~n~~~~~~f~~---~~l~~~~g~~~~~~~~p~GL~NlGNTCYmNSVLQ~L~sip~F~~~ll~~~--~~~~~~~ 517 (722)
++||++++|..|+|.+.. ..+.|+||| +++||+|+||+||||||||+|+++|.|...++... ....+..
T Consensus 276 l~elel~~N~i~Ew~~~~esg~~l~p~~gp------gytGl~NlGNSCYlnSVmQ~Lf~i~~fq~~~~~~~~~f~~~~~~ 349 (763)
T KOG0944|consen 276 LVELELDQNRIWEWEALEESGAPLEPLFGP------GYTGLINLGNSCYLNSVMQSLFSIPSFQRRYLEQERIFNCYPKD 349 (763)
T ss_pred HHHHHHHhhcccCceeeccCCCccccccCC------CccceeecCcchhHHHHHHHheecccHHHhhccccceeecCCCC
Confidence 999999999888776654 346777776 46999999999999999999999999999887652 2344567
Q ss_pred CcchHHHHHHHHHHHHHcC-----------CCCCChHHHHHHHHhccccCCCCCcccHHHHHHHHHHHHHHHHHhhcCCC
Q 004947 518 KDWCLMCELEQHVMMLRES-----------AGPLSPGRILSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGE 586 (722)
Q Consensus 518 ~~~~l~~qL~kL~~~L~s~-----------~~~isP~~f~~~l~~~~~~F~~~~QQDA~EFL~~LLd~L~~e~~~~l~~~ 586 (722)
|..+|.|||.+|+.+|.++ .+.|+|.+|+..+++.|+.|++.+||||+|||++||+.|++-....
T Consensus 350 P~ndf~cQ~~Kl~~gm~sgkys~p~~~~~~qngIsP~mFK~~igknHpeFst~~QQDA~EFllfLl~ki~~n~rs~---- 425 (763)
T KOG0944|consen 350 PTNDFNCQLAKLLHGMLSGKYSKPLMDPSNQNGISPLMFKALIGKNHPEFSTNRQQDAQEFLLFLLEKIRENSRSS---- 425 (763)
T ss_pred cchhHHHHHHHHHHHhhcCcccCccCCccccCCcCHHHHHHHHcCCCccccchhhhhHHHHHHHHHHHHhhccccc----
Confidence 8899999999999999753 2479999999999999999999999999999999999998742111
Q ss_pred CCCCcccccccccccccceEEEEEEEecCCCCeeeeEeeeeeeeecccC-----ccccHHHHHHhcCCCcccCCCCcccc
Q 004947 587 SKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYG-----WVESLEDALTQFTSPEDLDGENMYKC 661 (722)
Q Consensus 587 ~~~~~~~~~~s~I~~lF~g~l~s~i~C~~C~~~S~~~e~f~~LsL~Ip~-----~~~sLed~L~~~~~~E~ldg~nky~C 661 (722)
...+.++|.|.++.+++|..|++++++++..+.|.|+||. ..++|..||+.||.| .+++ |+|
T Consensus 426 ---------~~nptd~frF~ve~Rv~C~~c~kVrYs~~~~~~i~lpv~~~~~v~~~v~~~~cleaff~p-q~~d---f~s 492 (763)
T KOG0944|consen 426 ---------LPNPTDLFRFEVEDRVSCLGCRKVRYSYESEYLIQLPVPMTNEVREKVPISACLEAFFEP-QVDD---FWS 492 (763)
T ss_pred ---------CCCHHHHHHhhhhhhhhhhccccccccchhheeeEeeccccccccccCCHHHHHHHhcCC-cchh---hhh
Confidence 1457899999999999999999999999999999999984 357999999999999 5555 999
Q ss_pred CcCCceeeEEEEEEeccccceeEEEEEeEEEcCeEeEEecccccceeccc-cccCCce
Q 004947 662 ARCATYVRARKQLSIHEAPNILTIVLKRFQVSCYLLMRVRPLYVTLLLLP-ILLLSGF 718 (722)
Q Consensus 662 ~~C~~k~~a~K~~~I~~lP~vLiI~LkRF~~~~~~k~k~~v~f~~~l~~P-ll~lS~f 718 (722)
..|+.+..|+|+++|++||+|||||++||.+.+|.+.|+ +..+.+| .+++|.|
T Consensus 493 ~ac~~K~~a~kt~~~ksfP~yLiiqv~rf~~~dw~pkKl----d~~iempe~ldls~~ 546 (763)
T KOG0944|consen 493 TACGEKKGATKTTRFKSFPDYLIIQVGRFTLQDWVPKKL----DVSIEMPEELDLSSY 546 (763)
T ss_pred HhhcCccccccccccccCCceEEEEeeEEEecCceeeee----ccceecchhhchhhh
Confidence 999999999999999999999999999999999998888 3444555 5566654
No 2
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.2e-48 Score=422.95 Aligned_cols=250 Identities=48% Similarity=0.813 Sum_probs=233.4
Q ss_pred eeccccchhhhccccccccCcCCcCcccCCCcchHHHHHHHHhcCHHHHHHHHhcccCCcCCCCcchHHHHHHHHHHHHH
Q 004947 455 KMLFPYEEFLKLFQYEVIDLLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLR 534 (722)
Q Consensus 455 ~~~f~~~~l~~~~g~~~~~~~~p~GL~NlGNTCYmNSVLQ~L~sip~F~~~ll~~~~~~~~~~~~~~l~~qL~kL~~~L~ 534 (722)
+++|+++.+. +.+.++. ..+.||.|+|||||+|||||||.++|++..||+...|...|....+|++|+|+.++....
T Consensus 89 k~Lfp~e~~~--~~~~~~~-~~~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~~C~~~~~C~lc~~q~hi~~A~ 165 (545)
T KOG1865|consen 89 KVLFPYEKLP--LSSDRPA-AVGAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSRSCHRAKFCMLCTFQAHITRAL 165 (545)
T ss_pred hhccccceec--ccccccc-cCCcceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhhhccccCeeeehHHHHHHHHHh
Confidence 6799999887 4444444 667999999999999999999999999999999999999999999999999999987665
Q ss_pred cCC-CCCChHHHHHHHHhccccCCCCCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccccceEEEEEEEe
Q 004947 535 ESA-GPLSPGRILSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKC 613 (722)
Q Consensus 535 s~~-~~isP~~f~~~l~~~~~~F~~~~QQDA~EFL~~LLd~L~~e~~~~l~~~~~~~~~~~~~s~I~~lF~g~l~s~i~C 613 (722)
... .+|+|..|+..|..+...|+.|+|+||||||++++|.|+..++ ++....++..++++.|+++|||.++++|+|
T Consensus 166 ~~~g~pisP~~i~s~L~~I~~~f~~grQEDAHEFLr~~vd~mqk~cL---~g~~~~~~~sq~ttlv~~iFGG~LrS~vkC 242 (545)
T KOG1865|consen 166 HNPGHPISPSQILSNLRNISAHFGRGRQEDAHEFLRFTVDAMQKACL---PGHKQVDPRSQDTTLVHQIFGGYLRSQIKC 242 (545)
T ss_pred cCCCCccChHHHHHhhhhhcccccCCchhhHHHHHHHHHHHHHHhhc---CCCccCCcccccceehhhhhccchhhceec
Confidence 544 5999999999999999999999999999999999999999986 667788899999999999999999999999
Q ss_pred cCCCCeeeeEeeeeeeeecccCccccHHHHHHhcCCCcccCCCCccccCcCCceeeEEEEEEeccccceeEEEEEeEEEc
Q 004947 614 LRCSHESERYENIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQVS 693 (722)
Q Consensus 614 ~~C~~~S~~~e~f~~LsL~Ip~~~~sLed~L~~~~~~E~ldg~nky~C~~C~~k~~a~K~~~I~~lP~vLiI~LkRF~~~ 693 (722)
..|++++.++|+.++|+|.|. +..+|++||++|+++|.|+|+|+|+|++|++++.|.|+..|.+.|+||+||||||+.+
T Consensus 243 ~~C~~vS~tyE~~~dltvei~-d~~sl~~AL~qFt~~E~L~gen~Y~C~~Ck~~v~A~K~lti~raPnVLTi~LKRF~~~ 321 (545)
T KOG1865|consen 243 LHCKGVSDTYEPYLDLTLEIQ-DASSLQQALEQFTKPEKLDGENAYHCGRCKQKVPASKQLTIHRAPNVLTLHLKRFSNG 321 (545)
T ss_pred ccCCCcccccccccceEEEec-cchhHHHHHHHhhhHHhhCCccccccchhhhhCcccceeeeecCCceEEEeeehhccC
Confidence 999999999999999999999 6899999999999999999999999999999999999999999999999999999998
Q ss_pred CeEeEEecccccceeccc
Q 004947 694 CYLLMRVRPLYVTLLLLP 711 (722)
Q Consensus 694 ~~~k~k~~v~f~~~l~~P 711 (722)
.++|+.+.|.||..|++-
T Consensus 322 ~~gKI~K~I~fPE~LDl~ 339 (545)
T KOG1865|consen 322 TGGKISKPVSFPETLDLQ 339 (545)
T ss_pred cccccccccCCccccccc
Confidence 999999999999888763
No 3
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-42 Score=369.70 Aligned_cols=294 Identities=19% Similarity=0.258 Sum_probs=248.8
Q ss_pred ccccccCCCCcccccccCCccceeeccccchhhhcCCCCCchhhhhhccCCCCCCccccccccCchhhcccccccccccc
Q 004947 363 YCEMKAMNPMGTKNCKSAKSCTKVVGDQSCLEKERKGPIADESKAARVRDTIPAQGSNVVSKMGIMKMMGLRKSTKLRQD 442 (722)
Q Consensus 363 ~~~~~~~~p~~~k~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~~~s~p~~~~~hL~~~GI~k~~~l~~~~Kteks 442 (722)
|++. .|||.|||+.++++.+|.|||-|++++-.. ...+...|+..|||+ |.+..++||+
T Consensus 213 Y~~t--~Hplavkl~Sls~~~~diyCY~CD~e~R~~---------------~n~n~~s~~~~fGin----Ia~~~~~Eks 271 (749)
T COG5207 213 YEET--QHPLAVKLPSLSKEDCDIYCYLCDSEIRSR---------------YNSNENSVTIDFGIN----IADGKTEEKS 271 (749)
T ss_pred hhcc--CCceEEEccccccccccEEEEecCcccccC---------------Ccccccceeeeeccc----hhhccchHHH
Confidence 6654 599999999999999999999999954411 112667899999999 9999999999
Q ss_pred hhhhhhhhcccceeccccchh----hhccccccccCcCCcCcccCCCcchHHHHHHHHhcCHHHHHHHHhc--ccCCcCC
Q 004947 443 SSELWHDQHRKLKMLFPYEEF----LKLFQYEVIDLLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRR--SHSSACC 516 (722)
Q Consensus 443 l~El~~e~n~~~~~~f~~~~l----~~~~g~~~~~~~~p~GL~NlGNTCYmNSVLQ~L~sip~F~~~ll~~--~~~~~~~ 516 (722)
+++|+.++|.+| +|-..+- ...++| ...+||.|+||+||+|||+|.|++...+..-+... .....+.
T Consensus 272 l~~lq~eqn~nw--~F~~~~~~~~sk~~~~p-----s~~~GliNlGNsCYl~SviqSlv~~~v~~~~~d~l~~~~~~~~~ 344 (749)
T COG5207 272 LRKLQSEQNANW--EFLEKKRAPESKGESVP-----SPYVGLINLGNSCYLSSVIQSLVGYAVSKEEFDLLQHFEICYMK 344 (749)
T ss_pred HHHHHHhhhcCc--chhccccCchhhcccCC-----CCccceEecCCeeeHHHHHHHHhccccchhhhhhhccceeeeec
Confidence 999999999998 6654322 223333 33799999999999999999999988876655443 3334456
Q ss_pred CCcchHHHHHHHHHHHHHcCC-----CCCChHHHHHHHHhccccCCCCCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCc
Q 004947 517 GKDWCLMCELEQHVMMLRESA-----GPLSPGRILSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDP 591 (722)
Q Consensus 517 ~~~~~l~~qL~kL~~~L~s~~-----~~isP~~f~~~l~~~~~~F~~~~QQDA~EFL~~LLd~L~~e~~~~l~~~~~~~~ 591 (722)
.|..|+.|||-+|+.+|.... +.|+|..|+..++..++.|+..+||||+|||.+||+.|.+-+.
T Consensus 345 ~P~~~l~CQl~kll~~mk~~p~~~y~ngi~p~~fk~~igq~h~eFg~~~QQDA~EFLlfLL~kirk~~~----------- 413 (749)
T COG5207 345 NPLECLFCQLMKLLSKMKETPDNEYVNGISPLDFKMLIGQDHPEFGKFAQQDAHEFLLFLLEKIRKGER----------- 413 (749)
T ss_pred CCchhHHHHHHHHHhhccCCCCccccCCcChhhHHHHHcCCchhhhhhhhhhHHHHHHHHHHHHhhccc-----------
Confidence 788999999999999986543 5799999999999999999999999999999999999976321
Q ss_pred ccccccccccccceEEEEEEEecCCCCeeeeEeeeeeeeecccC--ccccHHHHHHhcCCCcccCCCCccccCcCCceee
Q 004947 592 RLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYG--WVESLEDALTQFTSPEDLDGENMYKCARCATYVR 669 (722)
Q Consensus 592 ~~~~~s~I~~lF~g~l~s~i~C~~C~~~S~~~e~f~~LsL~Ip~--~~~sLed~L~~~~~~E~ldg~nky~C~~C~~k~~ 669 (722)
.-..+.|.++|.|.++.++.|..|+.+++.+++...+.+++.+ +..++.++|+.||.|++++ |.|++|+.+..
T Consensus 414 -S~~~~~It~lf~Fe~e~rlsC~~C~~v~ySye~~~~i~i~le~n~E~~di~~~v~a~f~pdtiE----~~CenCk~K~~ 488 (749)
T COG5207 414 -SYLIPPITSLFEFEVERRLSCSGCMDVSYSYESMLMICIFLEGNDEPQDIRKSVEAFFLPDTIE----WSCENCKGKKK 488 (749)
T ss_pred -hhcCCCcchhhhhhhcceecccccccccccccceEEEEeecccCcchhhHHHHHHheECcccee----eehhhhcCccc
Confidence 1234568899999999999999999999999999998888774 4689999999999999999 99999999999
Q ss_pred EEEEEEeccccceeEEEEEeEEEcCeEeEEe
Q 004947 670 ARKQLSIHEAPNILTIVLKRFQVSCYLLMRV 700 (722)
Q Consensus 670 a~K~~~I~~lP~vLiI~LkRF~~~~~~k~k~ 700 (722)
|.++..|++||+|||+|..||.+.+|.-.++
T Consensus 489 a~~k~~~kslPk~LIlq~~R~~lqny~v~kl 519 (749)
T COG5207 489 ASRKPFIKSLPKYLILQVGRYSLQNYKVEKL 519 (749)
T ss_pred ccccchhhccCceeEEecceeeccceeehhc
Confidence 9999999999999999999999999874444
No 4
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.9e-40 Score=352.18 Aligned_cols=211 Identities=29% Similarity=0.502 Sum_probs=184.2
Q ss_pred CcccCCCcchHHHHHHHHhcCHHHHHHHHhcccCCcCCCCcchHHHHHHHHHHHHHcCC---CCCChHHHHHHHHhcccc
Q 004947 479 GLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESA---GPLSPGRILSHMRSISCQ 555 (722)
Q Consensus 479 GL~NlGNTCYmNSVLQ~L~sip~F~~~ll~~~~~~~~~~~~~~l~~qL~kL~~~L~s~~---~~isP~~f~~~l~~~~~~ 555 (722)
||.|+|||||||||||+|++ .+++++|+.||..|+... ..++|..|+..++..++.
T Consensus 1 Gl~NlGnTCY~NsvLQ~L~~---------------------~~l~~~L~~lf~~l~~~~~~~~~isP~~f~~~l~~~~~~ 59 (300)
T cd02663 1 GLENFGNTCYCNSVLQALYF---------------------ENLLTCLKDLFESISEQKKRTGVISPKKFITRLKRENEL 59 (300)
T ss_pred CccCCCcceehhHHHHHhhh---------------------HHHHHHHHHHHHHHHhCCCCCeeECHHHHHHHHHhhcCC
Confidence 99999999999999999987 468899999999998753 368999999999999999
Q ss_pred CCCCCcccHHHHHHHHHHHHHHHHHhhcCCCCC------CCcccccccccccccceEEEEEEEecCCCCeeeeEeeeeee
Q 004947 556 IGDGSQEDAHEFLRLLVASMQSICLERHGGESK------VDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDL 629 (722)
Q Consensus 556 F~~~~QQDA~EFL~~LLd~L~~e~~~~l~~~~~------~~~~~~~~s~I~~lF~g~l~s~i~C~~C~~~S~~~e~f~~L 629 (722)
|..++||||+|||.+|||.|++++......... ........++|.++|+|++.++++|..|++++.+.|+|++|
T Consensus 60 f~~~~QqDA~EFl~~lLd~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~G~~~~~~~C~~C~~~s~~~e~f~~L 139 (300)
T cd02663 60 FDNYMHQDAHEFLNFLLNEIAEILDAERKAEKANRKLNNNNNAEPQPTWVHEIFQGILTNETRCLTCETVSSRDETFLDL 139 (300)
T ss_pred CCCCccccHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCcCCCChhhhCceEEEeeEEeCCCCCCccccceeEEe
Confidence 999999999999999999999987543211100 01112346789999999999999999999999999999999
Q ss_pred eecccCccccHHHHHHhcCCCcccCCCCccccCcCCceeeEEEEEEeccccceeEEEEEeEEEcCe----EeEEeccccc
Q 004947 630 TLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQVSCY----LLMRVRPLYV 705 (722)
Q Consensus 630 sL~Ip~~~~sLed~L~~~~~~E~ldg~nky~C~~C~~k~~a~K~~~I~~lP~vLiI~LkRF~~~~~----~k~k~~v~f~ 705 (722)
+|+|+. ..+|++||+.|+++|.++|+|+|+|++|++++.++|+..|.++|+||+|||+||.++.. .|+...|.||
T Consensus 140 sl~i~~-~~sl~~~L~~~~~~E~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp 218 (300)
T cd02663 140 SIDVEQ-NTSITSCLRQFSATETLCGRNKFYCDECCSLQEAEKRMKIKKLPKILALHLKRFKYDEQLNRYIKLFYRVVFP 218 (300)
T ss_pred ccCCCC-cCCHHHHHHHhhcccccCCCCcEECCCCCCceeEEEEEEeccCCceeEEEEEeEEeecccCCceecCceEecC
Confidence 999997 68999999999999999999999999999999999999999999999999999998642 4555678888
Q ss_pred ceeccc
Q 004947 706 TLLLLP 711 (722)
Q Consensus 706 ~~l~~P 711 (722)
..+++.
T Consensus 219 ~~L~~~ 224 (300)
T cd02663 219 LELRLF 224 (300)
T ss_pred cEEecc
Confidence 877764
No 5
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.4e-39 Score=351.00 Aligned_cols=230 Identities=32% Similarity=0.510 Sum_probs=196.3
Q ss_pred cCcccCCCcchHHHHHHHHhcCHHHHHHHHhcccCC--cCCCCcchHHHHHHHHHHHHHcC--CCCCChHHHHHHHHhcc
Q 004947 478 RGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSS--ACCGKDWCLMCELEQHVMMLRES--AGPLSPGRILSHMRSIS 553 (722)
Q Consensus 478 ~GL~NlGNTCYmNSVLQ~L~sip~F~~~ll~~~~~~--~~~~~~~~l~~qL~kL~~~L~s~--~~~isP~~f~~~l~~~~ 553 (722)
+||.|+|||||||||||+|+++|+|+++++...+.. ....+..|+.++|.+||..|+.. ...+.|..|+..++...
T Consensus 1 rGl~N~gntCY~NsvLQ~L~~~~~f~~~ll~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~~~~~~ 80 (328)
T cd02660 1 RGLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCLSCSPNSCLSCAMDEIFQEFYYSGDRSPYGPINLLYLSWKHS 80 (328)
T ss_pred CCccccCcchHHHHHHHHHhcCHHHHHHHhcCccccccccCCccccHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhhc
Confidence 599999999999999999999999999999865543 23456789999999999999543 35789999999999988
Q ss_pred ccCCCCCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccccceEEEEEEEecCCCCeeeeEeeeeeeeecc
Q 004947 554 CQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEI 633 (722)
Q Consensus 554 ~~F~~~~QQDA~EFL~~LLd~L~~e~~~~l~~~~~~~~~~~~~s~I~~lF~g~l~s~i~C~~C~~~S~~~e~f~~LsL~I 633 (722)
+.|.++.||||+|||.+||+.|++++...... ........++|.++|+|.+.++++|..|++++.+.++|+.|+|+|
T Consensus 81 ~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~~~---~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i 157 (328)
T cd02660 81 RNLAGYSQQDAHEFFQFLLDQLHTHYGGDKNE---ANDESHCNCIIHQTFSGSLQSSVTCQRCGGVSTTVDPFLDLSLDI 157 (328)
T ss_pred hhhcccccccHHHHHHHHHHHHHHHhhccccc---ccccccCCceeEEecccEEEeeeEcCCCCCccceecccceeeeec
Confidence 89999999999999999999999987443211 111123357899999999999999999999999999999999999
Q ss_pred cCc--------------cccHHHHHHhcCCCcccCCCCccccCcCCceeeEEEEEEeccccceeEEEEEeEEEcC-eE--
Q 004947 634 YGW--------------VESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQVSC-YL-- 696 (722)
Q Consensus 634 p~~--------------~~sLed~L~~~~~~E~ldg~nky~C~~C~~k~~a~K~~~I~~lP~vLiI~LkRF~~~~-~~-- 696 (722)
|.. ..+|++||+.|+.+|.+++.+ |+|++|++++.+.|+..|.++|+||+|||+||.++. +.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~~~~~~-~~C~~C~~~~~~~~~~~i~~lP~~Lii~lkRf~~~~~~~~~ 236 (328)
T cd02660 158 PNKSTPSWALGESGVSGTPTLSDCLDRFTRPEKLGDFA-YKCSGCGSTQEATKQLSIKKLPPVLCFQLKRFEHSLNKTSR 236 (328)
T ss_pred cccccccccccccCCCCCCCHHHHHHHhcCccccCCCC-ccCCCCCCccceEEEEEecCCCceeEEEEEeEEecCCCCCc
Confidence 963 289999999999999999877 999999999999999999999999999999999976 43
Q ss_pred eEEecccccceeccc
Q 004947 697 LMRVRPLYVTLLLLP 711 (722)
Q Consensus 697 k~k~~v~f~~~l~~P 711 (722)
|+...|.||..|++.
T Consensus 237 K~~~~v~fp~~Ldl~ 251 (328)
T cd02660 237 KIDTYVQFPLELNMT 251 (328)
T ss_pred CCCcEEeCCCEechh
Confidence 444567777666553
No 6
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.7e-39 Score=345.06 Aligned_cols=234 Identities=50% Similarity=0.807 Sum_probs=202.7
Q ss_pred CcCcccCCCcchHHHHHHHHhcCHHHHHHHHhcccCCcCCCCcchHHHHHHHHHHHHH-cCCCCCChHHHHHHHHhcccc
Q 004947 477 PRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLR-ESAGPLSPGRILSHMRSISCQ 555 (722)
Q Consensus 477 p~GL~NlGNTCYmNSVLQ~L~sip~F~~~ll~~~~~~~~~~~~~~l~~qL~kL~~~L~-s~~~~isP~~f~~~l~~~~~~ 555 (722)
|+||.|+|||||||||||+|+++|+|+++++...+...+..+..+++++|..++.+++ .....+.|..|...+....+.
T Consensus 1 ~~GL~N~gntCY~NsvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~ 80 (304)
T cd02661 1 GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDCCNEGFCMMCALEAHVERALASSGPGSAPRIFSSNLKQISKH 80 (304)
T ss_pred CCCccccCchhHHHHHHHHhhCCHHHHHHHhcchhhhhccCCcchHHHHHHHHHHHHHhCCCCccChHHHHHHHHHHHHh
Confidence 5899999999999999999999999999998765555555667899999999998775 456689999999999999999
Q ss_pred CCCCCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccccceEEEEEEEecCCCCeeeeEeeeeeeeecccC
Q 004947 556 IGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYG 635 (722)
Q Consensus 556 F~~~~QQDA~EFL~~LLd~L~~e~~~~l~~~~~~~~~~~~~s~I~~lF~g~l~s~i~C~~C~~~S~~~e~f~~LsL~Ip~ 635 (722)
|..+.||||+|||.+||+.|++++.................+++.++|+|++.++++|..|+.++.+++.|..|+|+||.
T Consensus 81 f~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~~~~l~l~i~~ 160 (304)
T cd02661 81 FRIGRQEDAHEFLRYLLDAMQKACLDRFKKLKAVDPSSQETTLVQQIFGGYLRSQVKCLNCKHVSNTYDPFLDLSLDIKG 160 (304)
T ss_pred hcCcchhhHHHHHHHHHHHHHHHHhhhcccccccCccccCCChhhhcCCcEEeeeEEeCCCCCCcCccccceeeeeecCC
Confidence 99999999999999999999988654432211111223456789999999999999999999999999999999999997
Q ss_pred ccccHHHHHHhcCCCcccCCCCccccCcCCceeeEEEEEEeccccceeEEEEEeEEEcCeEeEEecccccceeccc
Q 004947 636 WVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQVSCYLLMRVRPLYVTLLLLP 711 (722)
Q Consensus 636 ~~~sLed~L~~~~~~E~ldg~nky~C~~C~~k~~a~K~~~I~~lP~vLiI~LkRF~~~~~~k~k~~v~f~~~l~~P 711 (722)
..+|+++|+.|+.+|.++|+++|+|+.|++++.+.++..|.++|++|+|||+||.++...|+...+.||..+++.
T Consensus 161 -~~~l~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P~iL~i~l~Rf~~~~~~Ki~~~v~f~~~L~l~ 235 (304)
T cd02661 161 -ADSLEDALEQFTKPEQLDGENKYKCERCKKKVKASKQLTIHRAPNVLTIHLKRFSNFRGGKINKQISFPETLDLS 235 (304)
T ss_pred -CCcHHHHHHHhcCceeeCCCCCeeCCCCCCccceEEEEEEecCCcEEEEEEeccccCCccccCCeEecCCeechh
Confidence 489999999999999999999999999999999999999999999999999999997445666677787766654
No 7
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.9e-39 Score=351.63 Aligned_cols=210 Identities=28% Similarity=0.425 Sum_probs=175.2
Q ss_pred CcCCcCcccCCCcchHHHHHHHHhcCHHHHHHHHhcccCCcCCCCcchHHHHHHHHH---HHHHc-CCCCCChHHHHHHH
Q 004947 474 LLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHV---MMLRE-SAGPLSPGRILSHM 549 (722)
Q Consensus 474 ~~~p~GL~NlGNTCYmNSVLQ~L~sip~F~~~ll~~~~~~~~~~~~~~l~~qL~kL~---~~L~s-~~~~isP~~f~~~l 549 (722)
..+++||.|+|||||||||||+|+++|+|++.+++..... ....+++.++ ..++. ....+.|..|+..+
T Consensus 21 ~~~~~GL~NlGnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~-------~~~~~~q~~~~~l~~~~~~~~~~~~P~~~~~~l 93 (332)
T cd02671 21 LLPFVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLVSLI-------SSVEQLQSSFLLNPEKYNDELANQAPRRLLNAL 93 (332)
T ss_pred CCCCcceeccCceEeHHHHHHHHHcChHHHHHHHhhhccc-------CcHHHHHHHHHHHHHHHhhcccccCHHHHHHHH
Confidence 3678999999999999999999999999999987643111 1112333333 22322 23456799999999
Q ss_pred HhccccCCCCCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccccceEEEEEEEecCCCCeeeeEeeeeee
Q 004947 550 RSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDL 629 (722)
Q Consensus 550 ~~~~~~F~~~~QQDA~EFL~~LLd~L~~e~~~~l~~~~~~~~~~~~~s~I~~lF~g~l~s~i~C~~C~~~S~~~e~f~~L 629 (722)
++.++.|..+.||||+|||.+||+.|+. .|.++|+|++.++++|..|++++.+.|+|++|
T Consensus 94 ~~~~~~f~~~~QQDA~EFl~~LLd~L~~--------------------~i~~~F~g~~~~~~~C~~C~~~s~~~E~f~~l 153 (332)
T cd02671 94 REVNPMYEGYLQHDAQEVLQCILGNIQE--------------------LVEKDFQGQLVLRTRCLECETFTERREDFQDI 153 (332)
T ss_pred HHhccccCCccccCHHHHHHHHHHHHHH--------------------HHHhhhceEEEEEEEeCCCCCeeceecccEEE
Confidence 9999999999999999999999999974 35789999999999999999999999999999
Q ss_pred eecccCc------------------cccHHHHHHhcCCCcccCCCCccccCcCCceeeEEEEEEeccccceeEEEEEeEE
Q 004947 630 TLEIYGW------------------VESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQ 691 (722)
Q Consensus 630 sL~Ip~~------------------~~sLed~L~~~~~~E~ldg~nky~C~~C~~k~~a~K~~~I~~lP~vLiI~LkRF~ 691 (722)
+|+|+.. ..+|++||+.|+++|.++|+|+|+|++|++++.|+|+..|.++|+||+|||+||.
T Consensus 154 sL~i~~~~~~~~~~~~~~~~~~~~~~~tL~~~L~~f~~~E~l~g~n~y~C~~C~~~~~a~k~~~~~~~P~vL~i~LkRF~ 233 (332)
T cd02671 154 SVPVQESELSKSEESSEISPDPKTEMKTLKWAISQFASVERIVGEDKYFCENCHHYTEAERSLLFDKLPEVITIHLKCFA 233 (332)
T ss_pred EEEeCCCcccccccccccccccccccCCHHHHHHHhCCcceecCCCCeeCCCCCCceeEEEEEEEecCCCEEEEEeeeec
Confidence 9999964 2599999999999999999999999999999999999999999999999999999
Q ss_pred EcC--------eEeEEecccccceecc
Q 004947 692 VSC--------YLLMRVRPLYVTLLLL 710 (722)
Q Consensus 692 ~~~--------~~k~k~~v~f~~~l~~ 710 (722)
++. ..|+...+.||..+++
T Consensus 234 ~~~~~~~~~~~~~Ki~~~v~fp~~L~~ 260 (332)
T cd02671 234 ANGSEFDCYGGLSKVNTPLLTPLKLSL 260 (332)
T ss_pred cccccccccCCceecCccccCcccccc
Confidence 753 3455556666665443
No 8
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.7e-39 Score=346.76 Aligned_cols=219 Identities=21% Similarity=0.375 Sum_probs=187.8
Q ss_pred CcccCCCcchHHHHHHHHhcCHHHHHHHHhcccCCcC---------CCCcchHHHHHHHHHHHHHcCC-CCCChHHHHHH
Q 004947 479 GLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSAC---------CGKDWCLMCELEQHVMMLRESA-GPLSPGRILSH 548 (722)
Q Consensus 479 GL~NlGNTCYmNSVLQ~L~sip~F~~~ll~~~~~~~~---------~~~~~~l~~qL~kL~~~L~s~~-~~isP~~f~~~ 548 (722)
||.|+||||||||+||+|+++|+|+++++........ .....+++++|++||.+|+.+. ..++|..|+..
T Consensus 1 GL~NlGnTCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lf~~l~~~~~~~i~p~~f~~~ 80 (324)
T cd02668 1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQLQFGNRSVVDPSGFVKA 80 (324)
T ss_pred CcccCCceeHHHHHHHHHHCCHHHHHHHHccCcccccccccccccCCcccchHHHHHHHHHHHHHhCCCceEChHHHHHH
Confidence 8999999999999999999999999999875432210 0123689999999999998655 57999999988
Q ss_pred HHhccccCCCCCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccccceEEEEEEEecCCCCeeeeEeeeee
Q 004947 549 MRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMD 628 (722)
Q Consensus 549 l~~~~~~F~~~~QQDA~EFL~~LLd~L~~e~~~~l~~~~~~~~~~~~~s~I~~lF~g~l~s~i~C~~C~~~S~~~e~f~~ 628 (722)
++ |..++||||+|||.+||+.|++++.... .....++|.++|+|++.++++|..|++++.+.|+|+.
T Consensus 81 l~-----~~~~~QqDa~EFl~~lLd~L~~~l~~~~--------~~~~~~~i~~~F~G~~~~~~~C~~C~~~s~~~e~f~~ 147 (324)
T cd02668 81 LG-----LDTGQQQDAQEFSKLFLSLLEAKLSKSK--------NPDLKNIVQDLFRGEYSYVTQCSKCGRESSLPSKFYE 147 (324)
T ss_pred hC-----CCCccccCHHHHHHHHHHHHHHHHhhcc--------CCcccchhhhhcceEEEEEEEeCCCCCccccccccEE
Confidence 83 6788999999999999999998764320 1123467899999999999999999999999999999
Q ss_pred eeecccCccccHHHHHHhcCCCcccCCCCccccCcCCceeeEEEEEEeccccceeEEEEEeEEEcC--e--EeEEecccc
Q 004947 629 LTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQVSC--Y--LLMRVRPLY 704 (722)
Q Consensus 629 LsL~Ip~~~~sLed~L~~~~~~E~ldg~nky~C~~C~~k~~a~K~~~I~~lP~vLiI~LkRF~~~~--~--~k~k~~v~f 704 (722)
|+|+|++ ..+|++||+.|+.+|.++|+|+|.|++|++++.+.|+..|.++|+||+|||+||.++. + .|+...+.|
T Consensus 148 l~l~i~~-~~sl~~~L~~~~~~e~l~g~~~~~C~~C~~~~~a~k~~~i~~lP~iLii~LkRf~~d~~~~~~~Ki~~~v~f 226 (324)
T cd02668 148 LELQLKG-HKTLEECIDEFLKEEQLTGDNQYFCESCNSKTDATRRIRLTTLPPTLNFQLLRFVFDRKTGAKKKLNASISF 226 (324)
T ss_pred EEEEecc-cCCHHHHHHHhhCceecCCCccccCCCCCceeeeEEEEEecCCCCeEEEEEEcceeecccCcceeCCcEEEC
Confidence 9999996 5899999999999999999999999999999999999999999999999999999864 2 355567888
Q ss_pred cceeccc
Q 004947 705 VTLLLLP 711 (722)
Q Consensus 705 ~~~l~~P 711 (722)
|..|++.
T Consensus 227 p~~Ldl~ 233 (324)
T cd02668 227 PEILDMG 233 (324)
T ss_pred CCeEech
Confidence 8777754
No 9
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.3e-38 Score=341.26 Aligned_cols=214 Identities=24% Similarity=0.277 Sum_probs=182.9
Q ss_pred CcccCCCcchHHHHHHHHhcCHHHHHHHHhcccC--CcCCCCcchHHHHHHHHHHHHHcC---------------CCCCC
Q 004947 479 GLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHS--SACCGKDWCLMCELEQHVMMLRES---------------AGPLS 541 (722)
Q Consensus 479 GL~NlGNTCYmNSVLQ~L~sip~F~~~ll~~~~~--~~~~~~~~~l~~qL~kL~~~L~s~---------------~~~is 541 (722)
||.|+|||||||||||||+++|+|+++|+...+. .....+..++.++|++|+..|++. ..+++
T Consensus 1 GL~NlGNTCY~NsvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~i~ 80 (311)
T cd02658 1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFPSDVVDPANDLNCQLIKLADGLLSGRYSKPASLKSENDPYQVGIK 80 (311)
T ss_pred CcccCCcchHHHHHHHHHHCCHHHHHHHhhhccccCCCcCCccccHHHHHHHHHHHhcCCCcCCCccccccccccccccC
Confidence 9999999999999999999999999999863322 222346778999999999998753 24689
Q ss_pred hHHHHHHHHhccccCCCCCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccccceEEEEEEEecCCCCeee
Q 004947 542 PGRILSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESE 621 (722)
Q Consensus 542 P~~f~~~l~~~~~~F~~~~QQDA~EFL~~LLd~L~~e~~~~l~~~~~~~~~~~~~s~I~~lF~g~l~s~i~C~~C~~~S~ 621 (722)
|..|+..++..++.|..+.||||+|||++||+.|++++... ....+.++|+|.++++++|..|++++.
T Consensus 81 p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~------------~~~~~~~~f~~~~~~~i~C~~C~~~s~ 148 (311)
T cd02658 81 PSMFKALIGKGHPEFSTMRQQDALEFLLHLIDKLDRESFKN------------LGLNPNDLFKFMIEDRLECLSCKKVKY 148 (311)
T ss_pred cHHHHHHHhccChhhcccccccHHHHHHHHHHHHHHhhccc------------ccCCchhheEEEeeEEEEcCCCCCEEE
Confidence 99999999999999999999999999999999999875311 123578899999999999999999999
Q ss_pred eEeeeeeeeecccCc-------------cccHHHHHHhcCCCcccCCCCccccCcCCceeeEEEEEEeccccceeEEEEE
Q 004947 622 RYENIMDLTLEIYGW-------------VESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLK 688 (722)
Q Consensus 622 ~~e~f~~LsL~Ip~~-------------~~sLed~L~~~~~~E~ldg~nky~C~~C~~k~~a~K~~~I~~lP~vLiI~Lk 688 (722)
+.+.|..|+|+||.. ..+|++||+.|+.+|.++ ++|+.|++++.+.|+.+|.++|+||+|||+
T Consensus 149 ~~e~~~~lsL~l~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~i~----~~C~~C~~~~~a~k~~~i~~lP~vLii~Lk 224 (311)
T cd02658 149 TSELSEILSLPVPKDEATEKEEGELVYEPVPLEDCLKAYFAPETIE----DFCSTCKEKTTATKTTGFKTFPDYLVINMK 224 (311)
T ss_pred eecceeEEeeecccccccccccccccCCCCCHHHHHHHHcCccccc----ccccCCCCcccEEEEEEeecCCceEEEEeE
Confidence 999999999999853 349999999999999998 689999999999999999999999999999
Q ss_pred eEEEc-CeEeEE--eccccccee
Q 004947 689 RFQVS-CYLLMR--VRPLYVTLL 708 (722)
Q Consensus 689 RF~~~-~~~k~k--~~v~f~~~l 708 (722)
||.++ +|...| ..+.||..+
T Consensus 225 RF~~~~~~~~~Ki~~~v~~p~~l 247 (311)
T cd02658 225 RFQLLENWVPKKLDVPIDVPEEL 247 (311)
T ss_pred EEEecCCCceEeeccccccCCcC
Confidence 99994 565444 355555544
No 10
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4e-38 Score=340.85 Aligned_cols=207 Identities=33% Similarity=0.537 Sum_probs=181.1
Q ss_pred CcccCCCcchHHHHHHHHhcCHHHHHHHHhcccCCcCCCCcchHHHHHHHHHHHHHcC-CCCCChHH-HHHHHHhccccC
Q 004947 479 GLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRES-AGPLSPGR-ILSHMRSISCQI 556 (722)
Q Consensus 479 GL~NlGNTCYmNSVLQ~L~sip~F~~~ll~~~~~~~~~~~~~~l~~qL~kL~~~L~s~-~~~isP~~-f~~~l~~~~~~F 556 (722)
||.|+||||||||+||+|+++|+|++++++..... .....+++++|+.+|..|... ...+.|.. |+..++ .+.|
T Consensus 1 GL~NlGnTCY~NS~LQ~L~~~~~fr~~ll~~~~~~--~~~~~~~~~~L~~lf~~l~~~~~~~~~~~~~~l~~~~--~~~f 76 (327)
T cd02664 1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPR--LGDSQSVMKKLQLLQAHLMHTQRRAEAPPDYFLEASR--PPWF 76 (327)
T ss_pred CCcCCcccHHHHHHHHHHHCcHHHHHHHHcCCccc--cCCcchHHHHHHHHHHHHhhcCCcccCCHHHHHHHhc--cccc
Confidence 89999999999999999999999999999865432 123456889999999888654 45667765 665543 4679
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccccceEEEEEEEecCCCCeeeeEeeeeeeeecccCc
Q 004947 557 GDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGW 636 (722)
Q Consensus 557 ~~~~QQDA~EFL~~LLd~L~~e~~~~l~~~~~~~~~~~~~s~I~~lF~g~l~s~i~C~~C~~~S~~~e~f~~LsL~Ip~~ 636 (722)
..+.||||+|||.+||+.|+. +|.++|+|++.++++|..|++++.+.|.|..|+|+||
T Consensus 77 ~~~~QqDa~EFl~~lLd~l~~--------------------~i~~~F~G~~~~~i~C~~C~~~s~~~e~f~~l~L~i~-- 134 (327)
T cd02664 77 TPGSQQDCSEYLRYLLDRLHT--------------------LIEKMFGGKLSTTIRCLNCNSTSARTERFRDLDLSFP-- 134 (327)
T ss_pred CCCCcCCHHHHHHHHHHHHHH--------------------HHHhhCcEEeEeEEEcCCCCCEecccccceeeecCCC--
Confidence 999999999999999999972 4688999999999999999999999999999999998
Q ss_pred cccHHHHHHhcCCCcccCCCCccccCcCCceeeEEEEEEeccccceeEEEEEeEEEcCe----EeEEecccccceecccc
Q 004947 637 VESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQVSCY----LLMRVRPLYVTLLLLPI 712 (722)
Q Consensus 637 ~~sLed~L~~~~~~E~ldg~nky~C~~C~~k~~a~K~~~I~~lP~vLiI~LkRF~~~~~----~k~k~~v~f~~~l~~Pl 712 (722)
+|++||+.|+.+|.++|+|+|+|++|++++.+.|+..|.++|+||+|||+||.|+.. .|+...|.||..+++|.
T Consensus 135 --sl~~~l~~~~~~E~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~~ldl~~ 212 (327)
T cd02664 135 --SVQDLLNYFLSPEKLTGDNQYYCEKCASLQDAEKEMKVTGAPEYLILTLLRFSYDQKTHVREKIMDNVSINEVLSLPV 212 (327)
T ss_pred --CHHHHHHHhcCeeEccCCCceeCCccCCccceeEEEEcccCChhhEEEeeeeEEccccCcceecCceEecCCEEecCc
Confidence 899999999999999999999999999999999999999999999999999998643 46666889999988875
Q ss_pred c
Q 004947 713 L 713 (722)
Q Consensus 713 l 713 (722)
.
T Consensus 213 ~ 213 (327)
T cd02664 213 R 213 (327)
T ss_pred c
Confidence 4
No 11
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.3e-38 Score=352.52 Aligned_cols=283 Identities=19% Similarity=0.211 Sum_probs=210.9
Q ss_pred ccCCCCcccccccCCccceeeccccchhhhcCCCCCchhhhhhccCCCCCCccccccccCchhhcccccccccccchhhh
Q 004947 367 KAMNPMGTKNCKSAKSCTKVVGDQSCLEKERKGPIADESKAARVRDTIPAQGSNVVSKMGIMKMMGLRKSTKLRQDSSEL 446 (722)
Q Consensus 367 ~~~~p~~~k~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~~~s~p~~~~~hL~~~GI~k~~~l~~~~Kteksl~El 446 (722)
.+.||++|+++| ++|||+.|.+++. + | .+..++ ++++ .++|++++.++
T Consensus 53 ~~~H~~~v~l~t-----~~~yc~~~~~~v~------d-----------~-~l~~i~--~~~~-------~~~~~~~i~~~ 100 (440)
T cd02669 53 EDNHHVFLNLET-----LKFYCLPDNYEII------D-----------S-SLDDIK--YVLN-------PTYTKEQISDL 100 (440)
T ss_pred ccCCCEEEECCC-----CCEEEeCCCCEEe------C-----------c-cHHHHH--HHhc-------CCCCHHHHHHh
Confidence 357999999997 8999999999665 1 1 122222 3333 35777777764
Q ss_pred hhhhcccceeccccchhhhccccccccCcCCcCcccCCCcchHHHHHHHHhcCHHHHHHHHhcccCCcCCCCcchHHHHH
Q 004947 447 WHDQHRKLKMLFPYEEFLKLFQYEVIDLLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCEL 526 (722)
Q Consensus 447 ~~e~n~~~~~~f~~~~l~~~~g~~~~~~~~p~GL~NlGNTCYmNSVLQ~L~sip~F~~~ll~~~~~~~~~~~~~~l~~qL 526 (722)
. .+..| .+......+. .|++||.|+|||||||||||+|+++|+|+++|+...+.........++.++|
T Consensus 101 ~--~~~~~----~~~~~~~~~~------~G~vGL~NlGnTCYmNsvLQ~L~~~p~lr~~~l~~~~~~~~~~~~~~l~~~l 168 (440)
T cd02669 101 D--RDPKL----SRDLDGKPYL------PGFVGLNNIKNNDYANVIIQALSHVKPIRNFFLLYENYENIKDRKSELVKRL 168 (440)
T ss_pred h--hcccc----ccccCCCCcc------CCccCccCCCCchHHHHHHHHHHCCHHHHHHHhhccccccccCCCcHHHHHH
Confidence 3 34333 1111112222 4679999999999999999999999999999998655432223456899999
Q ss_pred HHHHHHHHcCC---CCCChHHHHHHHHhc-cccCCCCCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccc
Q 004947 527 EQHVMMLRESA---GPLSPGRILSHMRSI-SCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHT 602 (722)
Q Consensus 527 ~kL~~~L~s~~---~~isP~~f~~~l~~~-~~~F~~~~QQDA~EFL~~LLd~L~~e~~~~l~~~~~~~~~~~~~s~I~~l 602 (722)
..++..+|+.. ..++|.+|+..++.. ++.|..++||||+|||++||+.|++++... .....++|.++
T Consensus 169 ~~l~~kl~~~~~~~~~isP~~fl~~l~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~l~~~---------~~~~~~ii~~~ 239 (440)
T cd02669 169 SELIRKIWNPRNFKGHVSPHELLQAVSKVSKKKFSITEQSDPVEFLSWLLNTLHKDLGGS---------KKPNSSIIHDC 239 (440)
T ss_pred HHHHHHHhccccCCCccCHHHHHHHHHhhcccccCCcccCCHHHHHHHHHHHHHHHhccC---------CCCCCCcceec
Confidence 99999998753 689999999999875 467999999999999999999999976321 12346789999
Q ss_pred cceEEEEEEEecCCC---------------CeeeeEeeeeeeeecccCc-------------cccHHHHHHhcCCCcccC
Q 004947 603 FGGRLWSKVKCLRCS---------------HESERYENIMDLTLEIYGW-------------VESLEDALTQFTSPEDLD 654 (722)
Q Consensus 603 F~g~l~s~i~C~~C~---------------~~S~~~e~f~~LsL~Ip~~-------------~~sLed~L~~~~~~E~ld 654 (722)
|+|++++.++|..|. .++.+.++|++|+|+||.. ..+|+++|+
T Consensus 240 F~G~l~~~~~c~~~~~~~~~~~~~~~~c~~~~s~~~~pF~~LsLdip~~~~~~~~~~~~~l~~~~l~e~L~--------- 310 (440)
T cd02669 240 FQGKVQIETQKIKPHAEEEGSKDKFFKDSRVKKTSVSPFLLLTLDLPPPPLFKDGNEENIIPQVPLKQLLK--------- 310 (440)
T ss_pred cCceEEEEEEeecccccccccccccccccccceeeeccceEEEecCCCCccccccccccccCcccHHHHHH---------
Confidence 999999999987654 3467789999999999963 146666664
Q ss_pred CCCccccCcCCceeeEEEEEEeccccceeEEEEEeEEEcCeEeEEecccccceecccc--ccCCce
Q 004947 655 GENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQVSCYLLMRVRPLYVTLLLLPI--LLLSGF 718 (722)
Q Consensus 655 g~nky~C~~C~~k~~a~K~~~I~~lP~vLiI~LkRF~~~~~~k~k~~v~f~~~l~~Pl--l~lS~f 718 (722)
+|.|+.|.....++|+..|.++|+||+||||||.++.....|. +..+.||+ ++|++|
T Consensus 311 ---ky~~~~c~~~~~a~k~~~I~~LP~vLiihLKRF~~~~~~~~K~----~t~V~FP~~~LDm~~y 369 (440)
T cd02669 311 ---KYDGKTETELKDSLKRYLISRLPKYLIFHIKRFSKNNFFKEKN----PTIVNFPIKNLDLSDY 369 (440)
T ss_pred ---hcCCccceecccceEEEEEeeCCcEEEEEEecccCCCCccccC----CCEEECCCCccchhhh
Confidence 2777888888889999999999999999999999876433333 34445554 355554
No 12
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.9e-37 Score=329.88 Aligned_cols=218 Identities=24% Similarity=0.227 Sum_probs=186.1
Q ss_pred CcccCCCcchHHHHHHHHhcCHHHHHHHHhcccCCc-CCCCcchHHHHHHHHHHHHHcCCCCCChHHHHHHHHhccccCC
Q 004947 479 GLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSA-CCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIG 557 (722)
Q Consensus 479 GL~NlGNTCYmNSVLQ~L~sip~F~~~ll~~~~~~~-~~~~~~~l~~qL~kL~~~L~s~~~~isP~~f~~~l~~~~~~F~ 557 (722)
||.|+|||||||||||+|+++|+|+++++....... ......+++++|++|+..|+.....++|..|+..++...+.|.
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~i~p~~~~~~l~~~~~~f~ 80 (305)
T cd02657 1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARRGANQSSDNLTNALRDLFDTMDKKQEPVPPIEFLQLLRMAFPQFA 80 (305)
T ss_pred CcccccchhHHHHHHHHHhCCHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHhCCCcCCcHHHHHHHHHHCcCcc
Confidence 899999999999999999999999999987654321 2335679999999999999988889999999999999888884
Q ss_pred ------CCCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccccceEEEEEEEecCCC-CeeeeEeeeeeee
Q 004947 558 ------DGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCS-HESERYENIMDLT 630 (722)
Q Consensus 558 ------~~~QQDA~EFL~~LLd~L~~e~~~~l~~~~~~~~~~~~~s~I~~lF~g~l~s~i~C~~C~-~~S~~~e~f~~Ls 630 (722)
.++||||+|||.+||+.|++++.. .....+.|.++|+|++.+.++|..|+ .++.+.|+|..|+
T Consensus 81 ~~~~~~~~~QqDA~EFl~~lld~L~~~~~~----------~~~~~~~i~~~F~g~~~~~~~C~~C~~~~~~~~e~f~~Ls 150 (305)
T cd02657 81 EKQNQGGYAQQDAEECWSQLLSVLSQKLPG----------AGSKGSFIDQLFGIELETKMKCTESPDEEEVSTESEYKLQ 150 (305)
T ss_pred cccCCCCccccCHHHHHHHHHHHHHHHhcc----------cCCCCcHHHHhhceEEEEEEEcCCCCCCCccccccceEEE
Confidence 459999999999999999997532 11235678999999999999999999 8999999999999
Q ss_pred ecccCc--cccHHHHHHhcCCCcccCCCCccccCcCCceeeEEEEEEeccccceeEEEEEeEEEcCeE----eEEecccc
Q 004947 631 LEIYGW--VESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQVSCYL----LMRVRPLY 704 (722)
Q Consensus 631 L~Ip~~--~~sLed~L~~~~~~E~ldg~nky~C~~C~~k~~a~K~~~I~~lP~vLiI~LkRF~~~~~~----k~k~~v~f 704 (722)
|+|+.. ..+|++||+.+++++.. ..|+.|++...+.|+..|.++|+||+|||+||.++... |+...+.|
T Consensus 151 l~i~~~~~~~~l~~~L~~~~~~~~~-----~~~~~~~~~~~~~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~f 225 (305)
T cd02657 151 CHISITTEVNYLQDGLKKGLEEEIE-----KHSPTLGRDAIYTKTSRISRLPKYLTVQFVRFFWKRDIQKKAKILRKVKF 225 (305)
T ss_pred eecCCCcccccHHHHHHHhhhhhhh-----hcCcccCCCceEEEEEEeccCCcEEEEEEECCccccccCceeecCcEEEC
Confidence 999974 47899999999986653 46899999999999999999999999999999987542 34446788
Q ss_pred cceeccc
Q 004947 705 VTLLLLP 711 (722)
Q Consensus 705 ~~~l~~P 711 (722)
|..+++.
T Consensus 226 P~~Ldl~ 232 (305)
T cd02657 226 PFELDLY 232 (305)
T ss_pred CceEecc
Confidence 8766553
No 13
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4.1e-37 Score=325.77 Aligned_cols=178 Identities=37% Similarity=0.551 Sum_probs=162.5
Q ss_pred CcccCCCcchHHHHHHHHhcCHHHHHHHHhcccCCcCCCCcchHHHHHHHHHHHHHcCCCCCChHHHHHHHHhccccCCC
Q 004947 479 GLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIGD 558 (722)
Q Consensus 479 GL~NlGNTCYmNSVLQ~L~sip~F~~~ll~~~~~~~~~~~~~~l~~qL~kL~~~L~s~~~~isP~~f~~~l~~~~~~F~~ 558 (722)
||.|+|||||||||||+|+++|+|+++++. +|..|+..++..++.|..
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~~~~~~l~--------------------------------~P~~~~~~l~~~~~~f~~ 48 (279)
T cd02667 1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE--------------------------------TPKELFSQVCRKAPQFKG 48 (279)
T ss_pred CCcCCCCchHHHHHHHHHhcCHHHHHHHHH--------------------------------CHHHHHHHHHHhhHhhcC
Confidence 999999999999999999999999999875 788899999888899999
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccccceEEEEEEEecCCCCeeeeEeeeeeeeecccC---
Q 004947 559 GSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYG--- 635 (722)
Q Consensus 559 ~~QQDA~EFL~~LLd~L~~e~~~~l~~~~~~~~~~~~~s~I~~lF~g~l~s~i~C~~C~~~S~~~e~f~~LsL~Ip~--- 635 (722)
++||||+|||.+||+.|+. +|.++|+|+++++++|..|++++.+.|.|+.|+|+++.
T Consensus 49 ~~QqDA~Efl~~lld~l~~--------------------~i~~~F~G~~~~~i~C~~C~~~s~~~E~f~~L~Lp~~~~~~ 108 (279)
T cd02667 49 YQQQDSHELLRYLLDGLRT--------------------FIDSIFGGELTSTIMCESCGTVSLVYEPFLDLSLPRSDEIK 108 (279)
T ss_pred CchhhHHHHHHHHHHHHHH--------------------hhhhhcceEEEEEEEcCCCCCEeCccccceEEecCCCcccC
Confidence 9999999999999999972 46789999999999999999999999999999999863
Q ss_pred ccccHHHHHHhcCCCcccCCCCccccCcCCceeeEEEEEEeccccceeEEEEEeEEEcCe---EeEEecccccceeccc
Q 004947 636 WVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQVSCY---LLMRVRPLYVTLLLLP 711 (722)
Q Consensus 636 ~~~sLed~L~~~~~~E~ldg~nky~C~~C~~k~~a~K~~~I~~lP~vLiI~LkRF~~~~~---~k~k~~v~f~~~l~~P 711 (722)
...+|++||+.|+.+|.++|+|+|.|+.|++ |+|+..|.++|+||+|||+||.++.. .|+...|.||..+++.
T Consensus 109 ~~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~---a~k~~~i~~~P~~Lii~LkRF~~~~~~~~~Ki~~~v~fP~~Ldl~ 184 (279)
T cd02667 109 SECSIESCLKQFTEVEILEGNNKFACENCTK---AKKQYLISKLPPVLVIHLKRFQQPRSANLRKVSRHVSFPEILDLA 184 (279)
T ss_pred CCCCHHHHHHhhcCeeEecCCCcccCCccCc---eeeEeEhhhCCCeEEEEEeccccCcccCceecCceEeCCCccchh
Confidence 3579999999999999999999999999987 89999999999999999999999743 5666678888766663
No 14
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-37 Score=341.21 Aligned_cols=243 Identities=26% Similarity=0.410 Sum_probs=210.1
Q ss_pred cCCcCcccCCCcchHHHHHHHHhcCHHHHHHHHhcccCCcCCC-----CcchHHHHHHHHHHHHHcCC-CCCChHHHHHH
Q 004947 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCG-----KDWCLMCELEQHVMMLRESA-GPLSPGRILSH 548 (722)
Q Consensus 475 ~~p~GL~NlGNTCYmNSVLQ~L~sip~F~~~ll~~~~~~~~~~-----~~~~l~~qL~kL~~~L~s~~-~~isP~~f~~~ 548 (722)
.|.+||+|+||||||||.||||.|++.+++||+...+....+. -...+..+++.|+.++..+. .++.|+.|+..
T Consensus 263 ~GtcGL~NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~Nplgmhg~vAsayadLik~ly~~~~haf~Ps~fK~t 342 (823)
T COG5560 263 AGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGNLHAFTPSGFKKT 342 (823)
T ss_pred ccccceecCCcceecchHHHHHhccHHHHHHhhhhhhHhhhcccCccchhhhHHHHHHHHHHHHhCccccccChHHHHHH
Confidence 4679999999999999999999999999999998765544333 34678888999999888655 48999999999
Q ss_pred HHhccccCCCCCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCcc---------------------cccccccccccceEE
Q 004947 549 MRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPR---------------------LQETTFIQHTFGGRL 607 (722)
Q Consensus 549 l~~~~~~F~~~~QQDA~EFL~~LLd~L~~e~~~~l~~~~~~~~~---------------------~~~~s~I~~lF~g~l 607 (722)
|+.++..|.++.|||.+||+.+|||.||+++.....+.....|. .++.++|.++|.|.+
T Consensus 343 IG~fn~~fsGy~QQDSqEFiaflLDgLHEdLnRI~~KpytskPdL~~~d~~~vKk~a~ecW~~H~kRNdSiItdLFqgmy 422 (823)
T COG5560 343 IGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVVVKKKAKECWWEHLKRNDSIITDLFQGMY 422 (823)
T ss_pred HhhhHHHhcCccchhHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCcchHHHHHHHHHHHHHHHhcCcccHHHHHHHHh
Confidence 99999999999999999999999999999987655444333331 336799999999999
Q ss_pred EEEEEecCCCCeeeeEeeeeeeeecccC----------------------------------------------------
Q 004947 608 WSKVKCLRCSHESERYENIMDLTLEIYG---------------------------------------------------- 635 (722)
Q Consensus 608 ~s~i~C~~C~~~S~~~e~f~~LsL~Ip~---------------------------------------------------- 635 (722)
++++.|..|+.++.++++|++|+||+|-
T Consensus 423 KSTL~Cp~C~~vsitfDPfmdlTLPLPvs~vw~htiv~fp~~g~~~pl~iel~~sSt~~~lk~lv~~~~gk~gc~ei~v~ 502 (823)
T COG5560 423 KSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQPLKIELDASSTIRGLKKLVDAEYGKLGCFEIKVM 502 (823)
T ss_pred hceeeccCcCceeeeecchhhccccCchhhcccccEEEECCCCCCCceEEEEeccchHHHHHHHHHHHhccCCccceeEE
Confidence 9999999999999999999999999982
Q ss_pred --------------------------------------------------------------------------------
Q 004947 636 -------------------------------------------------------------------------------- 635 (722)
Q Consensus 636 -------------------------------------------------------------------------------- 635 (722)
T Consensus 503 ~iy~g~~y~~l~~~dk~ll~~I~~~d~vylYe~~~ngi~vpvvh~~~~~gYks~rlFg~pflqlnv~~~~~i~~kLvkE~ 582 (823)
T COG5560 503 CIYYGGNYNMLEPADKVLLQDIPQTDFVYLYETNDNGIEVPVVHLRIEKGYKSKRLFGDPFLQLNVLIKASIYDKLVKEF 582 (823)
T ss_pred EEEeccchhhcchhhHHHHhhcCccceEEEeecCCCCeEEEEEeccccccccchhhhCCcceEEEeecchhhHHHHHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 004947 636 -------------------------------------------------------------------------------- 635 (722)
Q Consensus 636 -------------------------------------------------------------------------------- 635 (722)
T Consensus 583 ~ell~~v~~k~tdvd~~~~q~~l~r~es~p~~wl~l~teid~kree~veeE~~~n~nd~vvi~cew~ek~y~~lFsy~~l 662 (823)
T COG5560 583 EELLVLVEMKKTDVDLVSEQVRLLREESSPSSWLKLETEIDTKREEQVEEEGQMNFNDAVVISCEWEEKRYLSLFSYDPL 662 (823)
T ss_pred HHHHHHHhhcchhhhhhhhhccchhcccCcchhhhhhhhccchhhhhhhhhhccCCCcceEEeeeccccchhhhhcCCcc
Confidence
Q ss_pred ----------ccccHHHHHHhcCCCcccCCCCccccCcCCceeeEEEEEEeccccceeEEEEEeEEEcCeEeEEeccccc
Q 004947 636 ----------WVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQVSCYLLMRVRPLYV 705 (722)
Q Consensus 636 ----------~~~sLed~L~~~~~~E~ldg~nky~C~~C~~k~~a~K~~~I~~lP~vLiI~LkRF~~~~~~k~k~~v~f~ 705 (722)
..+||+|||..|.++|.+.-.+.|+|+.|+....|+|+..|.++|+||+||||||+..+....|+ +
T Consensus 663 w~~~ei~~~~rtiTL~dCl~eFskpEqLgl~DswyCpgCkefrqasKqmelwrlP~iLiihLkRFss~rsfrdKi----d 738 (823)
T COG5560 663 WTIREIGAAERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRSFRDKI----D 738 (823)
T ss_pred chhHHhhhccCCCcHHHHHHHhccHhhcCCcccccCCchHhhhhhhhhhhhhcCChheeeehhhhhhcccchhhh----h
Confidence 03799999999999999999999999999999999999999999999999999999876655555 4
Q ss_pred ceecccc--ccCCceEEe
Q 004947 706 TLLLLPI--LLLSGFAVI 721 (722)
Q Consensus 706 ~~l~~Pl--l~lS~f~~~ 721 (722)
..+.+|+ ++||+|.++
T Consensus 739 dlVeyPiddldLs~~~~~ 756 (823)
T COG5560 739 DLVEYPIDDLDLSGVEYM 756 (823)
T ss_pred hhhccccccccccceEEe
Confidence 5555566 788888875
No 15
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-37 Score=313.18 Aligned_cols=219 Identities=24% Similarity=0.396 Sum_probs=178.6
Q ss_pred cCcCCcCcccCCCcchHHHHHHHHhcCHHHHHHH-----HhcccCCcCCCCcc-hHHHHHHHHHHHH-HcCCCCCChHHH
Q 004947 473 DLLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYL-----LRRSHSSACCGKDW-CLMCELEQHVMML-RESAGPLSPGRI 545 (722)
Q Consensus 473 ~~~~p~GL~NlGNTCYmNSVLQ~L~sip~F~~~l-----l~~~~~~~~~~~~~-~l~~qL~kL~~~L-~s~~~~isP~~f 545 (722)
++..|.||.|+|||||||++||||+++..+...| ++......+.+... ....++.-|...+ ..+...|+|+.|
T Consensus 67 dn~~p~GL~N~GNtCymNc~lQCl~~~~dL~~M~~~~~ylq~INtd~prg~~g~~~~k~F~~l~~~~~~Hg~~sis~~nF 146 (415)
T COG5533 67 DNLPPNGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKPGSNAFKQFIALYETPGCHGPKSISPRNF 146 (415)
T ss_pred cccCCccccccCceehHHHHHHHHHhhhHHHHHhhhhhhhhhccCCCCCCCcchhHHHHHHHHHhccccCCCcccchHHH
Confidence 3467899999999999999999999999998843 33333333333333 4455555555443 334568999999
Q ss_pred HHHHHhccccCCCCCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCc-------------------------ccccccccc
Q 004947 546 LSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDP-------------------------RLQETTFIQ 600 (722)
Q Consensus 546 ~~~l~~~~~~F~~~~QQDA~EFL~~LLd~L~~e~~~~l~~~~~~~~-------------------------~~~~~s~I~ 600 (722)
++.++..++.|+...|||+|||+.+|||.||+++...... ....+ -..+.+.|.
T Consensus 147 ~~i~~~~n~~fs~dmQqD~qEFl~fflD~LHedln~N~Sr-s~i~~l~de~e~~Reel~l~~~S~~EWn~~L~sn~S~v~ 225 (415)
T COG5533 147 IDILSGRNKLFSGDMQQDSQEFLIFFLDLLHEDLNGNKSR-SPILELKDEFEEVREELPLSHFSHHEWNLHLRSNKSLVA 225 (415)
T ss_pred HHHHccccccccccchhhHHHHHHHHHHHHHhhhcCCccc-ccccccchHHHHHHhhcCcchhhhhhhHHhhccchHHHH
Confidence 9999999999999999999999999999999986432111 00000 012458899
Q ss_pred cccceEEEEEEEecCCCCeeeeEeeeeeeeecccCc-cccHHHHHHhcCCCcccCCCCccccCcCCceeeEEEEEEeccc
Q 004947 601 HTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGW-VESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEA 679 (722)
Q Consensus 601 ~lF~g~l~s~i~C~~C~~~S~~~e~f~~LsL~Ip~~-~~sLed~L~~~~~~E~ldg~nky~C~~C~~k~~a~K~~~I~~l 679 (722)
+.|.|+..++++|..|++.|+++.+|..|.+|++.- ...|+|||+.|.++|.++|++.|.|++|+++..++|+..|..+
T Consensus 226 ~~f~gq~~srlqC~~C~~TStT~a~fs~l~vp~~~v~~~~l~eC~~~f~~~e~L~g~d~W~CpkC~~k~ss~K~~~I~~l 305 (415)
T COG5533 226 KTFFGQDKSRLQCEACNYTSTTIAMFSTLLVPPYEVVQLGLQECIDRFYEEEKLEGKDAWRCPKCGRKESSRKRMEILVL 305 (415)
T ss_pred HHHhhhhhhhhhhhhcCCceeEEeccceeeeccchheeecHHHHHHHhhhHHhhcCcccccCchhcccccchheEEEEec
Confidence 999999999999999999999999999999999952 3569999999999999999999999999999999999999999
Q ss_pred cceeEEEEEeEEE
Q 004947 680 PNILTIVLKRFQV 692 (722)
Q Consensus 680 P~vLiI~LkRF~~ 692 (722)
|++|||||+||..
T Consensus 306 P~~LII~i~RF~i 318 (415)
T COG5533 306 PDVLIIHISRFHI 318 (415)
T ss_pred CceEEEEeeeeeE
Confidence 9999999999984
No 16
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=9.5e-36 Score=321.92 Aligned_cols=222 Identities=27% Similarity=0.408 Sum_probs=185.1
Q ss_pred CCcCcccCCCcchHHHHHHHHhcCHHHHHHHHhcccCCcCCCCcchHHHHHHHHHHHHHcCCC-CCChHHHHHHHHh-cc
Q 004947 476 SPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAG-PLSPGRILSHMRS-IS 553 (722)
Q Consensus 476 ~p~GL~NlGNTCYmNSVLQ~L~sip~F~~~ll~~~~~~~~~~~~~~l~~qL~kL~~~L~s~~~-~isP~~f~~~l~~-~~ 553 (722)
|.+||.|+||||||||+||+|+++|+|+++++...... ...+..++.++|+.||..|+.... .+.|..+. .+.. .+
T Consensus 1 g~~GL~N~GntCY~NsvLQ~L~~~~~f~~~~l~~~~~~-~~~~~~~~~~~l~~lf~~~~~~~~~~~~~~~~~-~~~~~~~ 78 (334)
T cd02659 1 GYVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPTE-DDDDNKSVPLALQRLFLFLQLSESPVKTTELTD-KTRSFGW 78 (334)
T ss_pred CCCCcccCCcchHHHHHHHHHhcCHHHHHHHHcCCCcc-cCcccccHHHHHHHHHHHHHhCCccccCcchhh-eeccCCC
Confidence 46899999999999999999999999999999853221 124557899999999999986543 44554443 2222 24
Q ss_pred ccCCCCCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccccceEEEEEEEecCCCCeeeeEeeeeeeeecc
Q 004947 554 CQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEI 633 (722)
Q Consensus 554 ~~F~~~~QQDA~EFL~~LLd~L~~e~~~~l~~~~~~~~~~~~~s~I~~lF~g~l~s~i~C~~C~~~S~~~e~f~~LsL~I 633 (722)
..|..+.||||+|||.+||+.|++++.. ....++|.++|+|.+...++|..|++.+...++|..|+|++
T Consensus 79 ~~~~~~~QqDa~Efl~~ll~~l~~~~~~-----------~~~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i 147 (334)
T cd02659 79 DSLNTFEQHDVQEFFRVLFDKLEEKLKG-----------TGQEGLIKNLFGGKLVNYIICKECPHESEREEYFLDLQVAV 147 (334)
T ss_pred CCCCcccchhHHHHHHHHHHHHHHHhcc-----------CcccchhhhhCceEEEeEEEecCCCceecccccceEEEEEc
Confidence 5688899999999999999999987632 11235789999999999999999999999999999999999
Q ss_pred cCccccHHHHHHhcCCCcccCCCCccccCcCCceeeEEEEEEeccccceeEEEEEeEEEcCe----EeEEecccccceec
Q 004947 634 YGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQVSCY----LLMRVRPLYVTLLL 709 (722)
Q Consensus 634 p~~~~sLed~L~~~~~~E~ldg~nky~C~~C~~k~~a~K~~~I~~lP~vLiI~LkRF~~~~~----~k~k~~v~f~~~l~ 709 (722)
+. ..+|++||+.|+.+|.++|+|+|.|++|++++.+.|+..|.++|+||+|||+||.++.. .|+...+.||..|+
T Consensus 148 ~~-~~~l~~~l~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vLii~l~Rf~~~~~~~~~~K~~~~v~fp~~Ld 226 (334)
T cd02659 148 KG-KKNLEESLDAYVQGETLEGDNKYFCEKCGKKVDAEKGVCFKKLPPVLTLQLKRFEFDFETMMRIKINDRFEFPLELD 226 (334)
T ss_pred CC-CCCHHHHHHHhcCeeEecCCccEecCcCCCcccEEEEEEeecCCCEEEEEeeeeEEccccCcceeCCceEeCCceec
Confidence 96 68999999999999999999999999999999999999999999999999999998532 34455778887776
Q ss_pred cc
Q 004947 710 LP 711 (722)
Q Consensus 710 ~P 711 (722)
++
T Consensus 227 l~ 228 (334)
T cd02659 227 ME 228 (334)
T ss_pred Cc
Confidence 64
No 17
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.98 E-value=4.7e-32 Score=281.24 Aligned_cols=161 Identities=36% Similarity=0.586 Sum_probs=137.9
Q ss_pred CcccCCCcchHHHHHHHHhcCHHHHHHHHhcccCCcCCCCcchHHHHHHHHHHHHHcCCCCCChHHHHHHHHhccccCCC
Q 004947 479 GLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIGD 558 (722)
Q Consensus 479 GL~NlGNTCYmNSVLQ~L~sip~F~~~ll~~~~~~~~~~~~~~l~~qL~kL~~~L~s~~~~isP~~f~~~l~~~~~~F~~ 558 (722)
||.|+||||||||+||+|+++|+|+++++...
T Consensus 1 Gl~N~g~tCy~ns~lQ~L~~~~~f~~~~~~~~------------------------------------------------ 32 (240)
T cd02662 1 GLVNLGNTCFMNSVLQALASLPSLIEYLEEFL------------------------------------------------ 32 (240)
T ss_pred CCcCCCCccHHHHHHHHHHCCHHHHHHHHHHH------------------------------------------------
Confidence 99999999999999999999999999987521
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccccceEEEEEEEecCCCCeee-eEeeeeeeeecccCc-
Q 004947 559 GSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESE-RYENIMDLTLEIYGW- 636 (722)
Q Consensus 559 ~~QQDA~EFL~~LLd~L~~e~~~~l~~~~~~~~~~~~~s~I~~lF~g~l~s~i~C~~C~~~S~-~~e~f~~LsL~Ip~~- 636 (722)
.||||+|||++||+.|+. .+.++|.|++.++++|..|++++. +.|+|..|+|+||..
T Consensus 33 -~QqDa~EFl~~ll~~l~~--------------------~i~~~F~g~~~~~i~C~~C~~~s~~~~e~f~~LsL~ip~~~ 91 (240)
T cd02662 33 -EQQDAHELFQVLLETLEQ--------------------LLKFPFDGLLASRIVCLQCGESSKVRYESFTMLSLPVPNQS 91 (240)
T ss_pred -hhcCHHHHHHHHHHHHHH--------------------hccCccccEEEEEEEeCCCCCccCcceeeeeeeEecccccC
Confidence 899999999999999983 357899999999999999999976 599999999999975
Q ss_pred ---cccHHHHHHhcCCCcccCCCCccccCcCCceeeEEEEEEeccccceeEEEEEeEEEcC-eE--eEEecccccceecc
Q 004947 637 ---VESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQVSC-YL--LMRVRPLYVTLLLL 710 (722)
Q Consensus 637 ---~~sLed~L~~~~~~E~ldg~nky~C~~C~~k~~a~K~~~I~~lP~vLiI~LkRF~~~~-~~--k~k~~v~f~~~l~~ 710 (722)
..+|++||+.|+.+|.++| |.|++| +..|.++|+||+|||+||.++. +. |+...+.||..+
T Consensus 92 ~~~~~sl~~~L~~~~~~E~l~~---~~C~~C--------~~~i~~lP~vLii~LkRF~~~~~~~~~K~~~~v~fp~~l-- 158 (240)
T cd02662 92 SGSGTTLEHCLDDFLSTEIIDD---YKCDRC--------QTVIVRLPQILCIHLSRSVFDGRGTSTKNSCKVSFPERL-- 158 (240)
T ss_pred CCCCCCHHHHHHHhcCcccccC---cCCCCC--------eEEeecCCcEEEEEEEEEEEcCCCceeeeccEEECCCcc--
Confidence 4799999999999999998 999999 6689999999999999999976 43 555566777655
Q ss_pred ccccCCceEEe
Q 004947 711 PILLLSGFAVI 721 (722)
Q Consensus 711 Pll~lS~f~~~ 721 (722)
+......|+||
T Consensus 159 ~~~~Y~L~avi 169 (240)
T cd02662 159 PKVLYRLRAVV 169 (240)
T ss_pred CCceEEEEEEE
Confidence 33334444443
No 18
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.3e-30 Score=296.19 Aligned_cols=220 Identities=31% Similarity=0.411 Sum_probs=183.9
Q ss_pred cCCcCcccCCCcchHHHHHHHHhcCHHHHHHHHhcccCCc----CCCCcchHHHHHHHHHHHHHcCC--CCCChHHHHHH
Q 004947 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSA----CCGKDWCLMCELEQHVMMLRESA--GPLSPGRILSH 548 (722)
Q Consensus 475 ~~p~GL~NlGNTCYmNSVLQ~L~sip~F~~~ll~~~~~~~----~~~~~~~l~~qL~kL~~~L~s~~--~~isP~~f~~~ 548 (722)
.+.+||.|+|||||||++||||+.++.|+..++...+... .......+..++.+++..++... ..+.|+.|+..
T Consensus 299 ~~~~GL~NlGntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~~~~~~~~~~l~~~~~~~l~~~~~~~~~~s~~P~~f~~~ 378 (653)
T KOG1868|consen 299 FGCPGLRNLGNTCFMNSILQCLFSTGELRDNFLSIKLPQFINLDLFFGAEELESACAKLLQKLWHGHGQFSVLPRRFIRV 378 (653)
T ss_pred cCCceeccCCcchHHHHHHHHHhhccccchhhhhHHHHHHcccCCcccchhHHHHHHHhhhhhccCCCceecCcHHHHHH
Confidence 5679999999999999999999999999977766433222 22345677888888888776543 47889999999
Q ss_pred HHhccccCCCCCcccHHHHHHHHHHHHHHHHHhhcCC-------------CCCCC-----------cccccccccccccc
Q 004947 549 MRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGG-------------ESKVD-----------PRLQETTFIQHTFG 604 (722)
Q Consensus 549 l~~~~~~F~~~~QQDA~EFL~~LLd~L~~e~~~~l~~-------------~~~~~-----------~~~~~~s~I~~lF~ 604 (722)
+.++.+.|.++.|||||||+.++++.||+++.+.-.. ..... ......+.|.++|.
T Consensus 379 ~~~y~~~~~~~~Qqd~qEfl~~lld~Lhe~ln~~~~~~~~~p~~~~~~~~~~~~~~s~~s~~~w~~~~~~~d~~i~~lf~ 458 (653)
T KOG1868|consen 379 LKRYSPNFSGYSQQDAQEFLIFLLDRLHEELNENTRPLKLSPLMGSYLLSELELSDSKKSLAEWLRYLEEEDSKIGDLFV 458 (653)
T ss_pred HhhcccccccccccchHHHHHHHHHhhhHhhhccCCCCccCccccccccccccccccchhHHHHHhhccccchHHHHHHH
Confidence 9999999999999999999999999999998653110 00000 00113345899999
Q ss_pred eEEEEEEEecCCCCeeeeEeeeeeeeecccCc-----cccHHHHHHhcCCCcccCCCCccccCcCCceeeEE--EEEEec
Q 004947 605 GRLWSKVKCLRCSHESERYENIMDLTLEIYGW-----VESLEDALTQFTSPEDLDGENMYKCARCATYVRAR--KQLSIH 677 (722)
Q Consensus 605 g~l~s~i~C~~C~~~S~~~e~f~~LsL~Ip~~-----~~sLed~L~~~~~~E~ldg~nky~C~~C~~k~~a~--K~~~I~ 677 (722)
|++++.++|..|++++.+++.|.+|+|+||.. .++|++|+..|++.|.++++++|.|++|+.+.... |+..|.
T Consensus 459 gQ~ks~Lkc~~cg~~s~t~~~f~~lslpIp~~~~~~~~~~L~~C~~~ft~~ekle~~~~w~Cp~c~~~~~~~~lK~~~i~ 538 (653)
T KOG1868|consen 459 GQLKSYLKCQACGYTSTTFETFTDLSLPIPKKGFAGGKVSLEDCLSLFTKEEKLEGDEAWLCPRCKHKESSKTLKKLTIL 538 (653)
T ss_pred HHHHhheehhhcCCcceeeecceeeEEecccccccccccchHhhhccccchhhcccccccCCccccCcccccccceeeee
Confidence 99999999999999999999999999999953 25699999999999999999999999999999885 999999
Q ss_pred cccceeEEEEEeEEEcC
Q 004947 678 EAPNILTIVLKRFQVSC 694 (722)
Q Consensus 678 ~lP~vLiI~LkRF~~~~ 694 (722)
+||++|+|||+||.++.
T Consensus 539 ~lp~iLiihL~Rf~~~~ 555 (653)
T KOG1868|consen 539 RLPKILIIHLKRFSSDG 555 (653)
T ss_pred cCCHHHHHHHHHhccCc
Confidence 99999999999999975
No 19
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.96 E-value=3.5e-29 Score=256.13 Aligned_cols=146 Identities=40% Similarity=0.690 Sum_probs=133.7
Q ss_pred CcccCCCcchHHHHHHHHhcCHHHHHHHHhcccCCcCCCCcchHHHHHHHHHHHHHcCCCCCChHHHHHHHHhccccCCC
Q 004947 479 GLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIGD 558 (722)
Q Consensus 479 GL~NlGNTCYmNSVLQ~L~sip~F~~~ll~~~~~~~~~~~~~~l~~qL~kL~~~L~s~~~~isP~~f~~~l~~~~~~F~~ 558 (722)
||.|.||+||+||+||+|++
T Consensus 1 gl~n~~~~cy~n~~~Q~l~~------------------------------------------------------------ 20 (230)
T cd02674 1 GLRNLGNTCYMNSILQCLSA------------------------------------------------------------ 20 (230)
T ss_pred CccccCcchhhhHHHHHHHH------------------------------------------------------------
Confidence 99999999999999999988
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccccceEEEEEEEecCCCCeeeeEeeeeeeeecccCc--
Q 004947 559 GSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGW-- 636 (722)
Q Consensus 559 ~~QQDA~EFL~~LLd~L~~e~~~~l~~~~~~~~~~~~~s~I~~lF~g~l~s~i~C~~C~~~S~~~e~f~~LsL~Ip~~-- 636 (722)
.||||+||+.+||+.|+ +.+.++|+|++..+++|..|++.+.+.|+|..|+|+||..
T Consensus 21 -~QqDa~Ef~~~ll~~l~--------------------~~i~~~F~~~~~~~~~C~~C~~~~~~~e~~~~l~l~ip~~~~ 79 (230)
T cd02674 21 -DQQDAQEFLLFLLDGLH--------------------SIIVDLFQGQLKSRLTCLTCGKTSTTFEPFTYLSLPIPSGSG 79 (230)
T ss_pred -hhhhHHHHHHHHHHHHh--------------------hhHHheeCCEEeCcEEcCCCcCCcceecceeEEEEecccccC
Confidence 89999999999999997 2468899999999999999999999999999999999964
Q ss_pred ---cccHHHHHHhcCCCcccCCCCccccCcCCceeeEEEEEEeccccceeEEEEEeEEEcCeEeEEe--ccccc
Q 004947 637 ---VESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQVSCYLLMRV--RPLYV 705 (722)
Q Consensus 637 ---~~sLed~L~~~~~~E~ldg~nky~C~~C~~k~~a~K~~~I~~lP~vLiI~LkRF~~~~~~k~k~--~v~f~ 705 (722)
..+|+++|+.|+.+|.++|.++|.|++|++++.+.++..|.++|+||+|||+||.++.+...|. .+.||
T Consensus 80 ~~~~~sl~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~iLii~l~R~~~~~~~~~K~~~~v~~~ 153 (230)
T cd02674 80 DAPKVTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSRGSTRKLTTPVTFP 153 (230)
T ss_pred CCCCCCHHHHHHHhcCccccCCCCceeCCCCCCccceEEEEEEecCChhhEeEhhheecCCCCcccCCceEecc
Confidence 3699999999999999999999999999999999999999999999999999999976444333 55565
No 20
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.95 E-value=3.4e-28 Score=264.28 Aligned_cols=181 Identities=20% Similarity=0.273 Sum_probs=147.0
Q ss_pred CcCcccCCCcchHHHHHHHHhcCHHHHHHHHhcccCCc-----------CC---------CCcchHHHHHHHHHHHHHcC
Q 004947 477 PRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSA-----------CC---------GKDWCLMCELEQHVMMLRES 536 (722)
Q Consensus 477 p~GL~NlGNTCYmNSVLQ~L~sip~F~~~ll~~~~~~~-----------~~---------~~~~~l~~qL~kL~~~L~s~ 536 (722)
|+||.|+||||||||+||+|+++|+||++++....... +. ....+++.+|++||..|+.+
T Consensus 1 PvGL~NlGNTCYmNSlLQ~L~~i~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LF~~l~~s 80 (343)
T cd02666 1 PAGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYELRSLFNDLIHS 80 (343)
T ss_pred CCCcccCCceeHHHHHHHHHHccHHHHHHHHcCCccccccccccccccccCccccchhhhhhHHHHHHHHHHHHHHHHhC
Confidence 68999999999999999999999999999987542110 00 01236999999999999876
Q ss_pred C-CCCChHHHHHHHHhccccCCCCCcccHHHHHHHHHHHHHHHHHhhcCCC--CCCCcccccccccccccceEEEEEEEe
Q 004947 537 A-GPLSPGRILSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGE--SKVDPRLQETTFIQHTFGGRLWSKVKC 613 (722)
Q Consensus 537 ~-~~isP~~f~~~l~~~~~~F~~~~QQDA~EFL~~LLd~L~~e~~~~l~~~--~~~~~~~~~~s~I~~lF~g~l~s~i~C 613 (722)
. ..+.|..++..+.. .||||+||+..||+.|+.++...-... ..........++|.++|+|++++.++|
T Consensus 81 ~~~~v~P~~~l~~l~~--------~QQDa~Ef~~~lld~Le~~lk~~~~~~~~~~~~~~~~~~~~I~~lF~G~~~~~i~c 152 (343)
T cd02666 81 NTRSVTPSKELAYLAL--------RQQDVTECIDNVLFQLEVALEPISNAFAGPDTEDDKEQSDLIKRLFSGKTKQQLVP 152 (343)
T ss_pred CCCccCcHHHHHhccc--------cccchHHHHHHHHHHHHHHhcCccccccCcccccccchhhhhhHhceeeEEEEEEe
Confidence 5 68999999876642 899999999999999999864321000 000111234678999999999999999
Q ss_pred cCCC---CeeeeEeeeeeeeecccC---------ccccHHHHHHhcCCCcccCCCCccccCcCCceeeEEEEEEeccccc
Q 004947 614 LRCS---HESERYENIMDLTLEIYG---------WVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPN 681 (722)
Q Consensus 614 ~~C~---~~S~~~e~f~~LsL~Ip~---------~~~sLed~L~~~~~~E~ldg~nky~C~~C~~k~~a~K~~~I~~lP~ 681 (722)
..|+ ..+.+.|.|++|+|+|+. ...+|.+||+.|++.|. |.+||+
T Consensus 153 ~~~~~~~~~s~~~E~F~~L~l~I~~~~~~~~~~~~~~~L~d~L~~~~~~e~-----------------------~~~~P~ 209 (343)
T cd02666 153 ESMGNQPSVRTKTERFLSLLVDVGKKGREIVVLLEPKDLYDALDRYFDYDS-----------------------LTKLPQ 209 (343)
T ss_pred cccCCCCCCccccceeEEEEEecCcccccccccCCCCCHHHHHHHhcChhh-----------------------hccCCH
Confidence 9997 789999999999999996 57899999999998666 999999
Q ss_pred eeEEEEE
Q 004947 682 ILTIVLK 688 (722)
Q Consensus 682 vLiI~Lk 688 (722)
||.||||
T Consensus 210 vl~~qlq 216 (343)
T cd02666 210 RSQVQAQ 216 (343)
T ss_pred HHHHHHh
Confidence 9999999
No 21
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.2e-28 Score=274.71 Aligned_cols=231 Identities=28% Similarity=0.396 Sum_probs=193.3
Q ss_pred cCCcCcccCCCcchHHHHHHHHhcCHHHHHHHHhcccCCc-CC-CCcchHHHHHHHHHHHHHcCC-CCCChHHHHHHHHh
Q 004947 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSA-CC-GKDWCLMCELEQHVMMLRESA-GPLSPGRILSHMRS 551 (722)
Q Consensus 475 ~~p~GL~NlGNTCYmNSVLQ~L~sip~F~~~ll~~~~~~~-~~-~~~~~l~~qL~kL~~~L~s~~-~~isP~~f~~~l~~ 551 (722)
.+.+||+|-|+|||||+++|-|.++|.+++-++...+... .. .-...++++++.+|..|..+. .++-|+.|.+.++-
T Consensus 93 ~gfVGLKNagatcyMNav~QQlymIP~Lrh~ll~~~~~td~pd~s~~e~vl~~lQ~iF~hL~~s~lQyyVPeg~Wk~Fr~ 172 (944)
T KOG1866|consen 93 EGFVGLKNAGATCYMNAVIQQLYMIPGLRHLLLAFVGTTDLPDMSGDEKVLRHLQVIFGHLAASQLQYYVPEGFWKQFRL 172 (944)
T ss_pred cceeeecCCCchHHHhhhhhhhhhcccccchhhhhcccccchhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHhhc
Confidence 4579999999999999999999999999988766444411 11 112339999999999886544 58899999999988
Q ss_pred ccccCCCCCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccccceEEEEEEEecCCCCeeeeEeeeeeeee
Q 004947 552 ISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTL 631 (722)
Q Consensus 552 ~~~~F~~~~QQDA~EFL~~LLd~L~~e~~~~l~~~~~~~~~~~~~s~I~~lF~g~l~s~i~C~~C~~~S~~~e~f~~LsL 631 (722)
........+||||.|||..|||.+++.++ .++ ..-.+.+.|+|.+..+-.|..|-|.-...|.|+.|+|
T Consensus 173 ~~~pln~reqhDA~eFf~sLld~~De~LK-klg----------~p~lf~n~f~G~ysdqKIC~~CpHRY~~eE~F~~l~l 241 (944)
T KOG1866|consen 173 WGEPLNLREQHDALEFFNSLLDSLDEALK-KLG----------HPQLFSNTFGGSYSDQKICQGCPHRYECEESFTTLNL 241 (944)
T ss_pred cCCccchHhhhhHHHHHHHHHHHHHHHHH-HhC----------CcHHHHHHhcCccchhhhhccCCcccCccccceeeee
Confidence 88888899999999999999999988753 332 2235788999999999999999999999999999999
Q ss_pred cccCccccHHHHHHhcCCCcccCCCCccccCcCCceeeEEEEEEeccccceeEEEEEeEEEcCeEeEEecccccceeccc
Q 004947 632 EIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQVSCYLLMRVRPLYVTLLLLP 711 (722)
Q Consensus 632 ~Ip~~~~sLed~L~~~~~~E~ldg~nky~C~~C~~k~~a~K~~~I~~lP~vLiI~LkRF~~~~~~k~k~~v~f~~~l~~P 711 (722)
+|. ..+|+++|++|.+.|.++|.|.|+|++|++|+...|++.|++||.||+||||||.|| |... ..+.|.+.+.||
T Consensus 242 ~i~--~~nLeesLeqfv~gevlEG~nAYhCeKCdeK~~TvkRt~ik~LPsvl~IqLkRF~yD-~e~~-~~iK~n~~frFP 317 (944)
T KOG1866|consen 242 DIR--HQNLEESLEQFVKGEVLEGANAYHCEKCDEKVDTVKRTCIKKLPSVLAIQLKRFDYD-WERE-CAIKFNDYFRFP 317 (944)
T ss_pred ecc--cchHHHHHHHHHHHHHhcCcchhhhhhhhhhhHhHHHHHHhhCChhheehhhhccch-hhhc-cccccchhcccc
Confidence 999 489999999999999999999999999999999999999999999999999999994 3321 123455666666
Q ss_pred c-ccCCceEE
Q 004947 712 I-LLLSGFAV 720 (722)
Q Consensus 712 l-l~lS~f~~ 720 (722)
- ++|.+|+|
T Consensus 318 ~~ldMePYtv 327 (944)
T KOG1866|consen 318 RELDMEPYTV 327 (944)
T ss_pred hhhcCCceee
Confidence 5 67777776
No 22
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.94 E-value=7.6e-27 Score=242.99 Aligned_cols=159 Identities=25% Similarity=0.357 Sum_probs=131.1
Q ss_pred cccCCCcchHHHHHHHHhcCHHHHHHHHhcccCCcCCCCcchHHHHHHHHHHHHHcCCCCCChHHHHHHHHhccccCCCC
Q 004947 480 LLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIGDG 559 (722)
Q Consensus 480 L~NlGNTCYmNSVLQ~L~sip~F~~~ll~~~~~~~~~~~~~~l~~qL~kL~~~L~s~~~~isP~~f~~~l~~~~~~F~~~ 559 (722)
|+|.||+||+||.+|+|. .+++.++.|.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~--------------------------------------------------~i~~~~~~F~~~ 31 (245)
T cd02673 2 LVNTGNSCYFNSTMQALS--------------------------------------------------SIGKINTEFDND 31 (245)
T ss_pred ceecCCeeeehhHHHHHH--------------------------------------------------HHhhhhhhcCCC
Confidence 789999999999999974 345567789999
Q ss_pred CcccHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccccceEEEEEEEecCCCCeeeeEeeeeeeeecccCc-cc
Q 004947 560 SQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGW-VE 638 (722)
Q Consensus 560 ~QQDA~EFL~~LLd~L~~e~~~~l~~~~~~~~~~~~~s~I~~lF~g~l~s~i~C~~C~~~S~~~e~f~~LsL~Ip~~-~~ 638 (722)
+||||||||++|||.|++++.......... ........+.++|+|.++++++|..|++++.+.++|++|+|+|+.. ..
T Consensus 32 ~QQDAhEFL~~LLd~l~~~~~~~~~~~~~~-~~~~~~~~~~~~F~~~l~s~i~C~~C~~~s~~~e~~~~L~L~i~~~~~~ 110 (245)
T cd02673 32 DQQDAHEFLLTLLEAIDDIMQVNRTNVPPS-NIEIKRLNPLEAFKYTIESSYVCIGCSFEENVSDVGNFLDVSMIDNKLD 110 (245)
T ss_pred chhhHHHHHHHHHHHHHHHHHhhcccCCCC-cccccccCHhHheeeEEEeEEEecCCCCeeeeccccceeccccccCCcc
Confidence 999999999999999999775432211100 0011122346789999999999999999999999999999999964 46
Q ss_pred cHHHHHHhcCCCcccCCCCccccCcCCceeeEEEEEEeccccceeEEEEEeEEEcC
Q 004947 639 SLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQVSC 694 (722)
Q Consensus 639 sLed~L~~~~~~E~ldg~nky~C~~C~~k~~a~K~~~I~~lP~vLiI~LkRF~~~~ 694 (722)
.|++|+..|+..+.++ |+|++|+.+ .+.|+.+|.++|+||+||||||.+..
T Consensus 111 ~le~l~~~~~~~~~~e----~~C~~C~~~-~a~k~~~i~~~P~vL~i~lkRf~~~~ 161 (245)
T cd02673 111 IDELLISNFKTWSPIE----KDCSSCKCE-SAISSERIMTFPECLSINLKRYKLRI 161 (245)
T ss_pred hHHHHHHHhhcccccC----ccCCCCCCc-cceeechhhhCChhhEEeeEeeeecc
Confidence 7899999999888887 899999976 78899999999999999999998743
No 23
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.7e-27 Score=264.05 Aligned_cols=278 Identities=19% Similarity=0.273 Sum_probs=210.7
Q ss_pred CCccccccccCchhhcccccccccccchhhhhhhhcccc----eeccccch-h-hhccccccccCcCCcCcccCCCcchH
Q 004947 416 AQGSNVVSKMGIMKMMGLRKSTKLRQDSSELWHDQHRKL----KMLFPYEE-F-LKLFQYEVIDLLSPRGLLNCGNSCYA 489 (722)
Q Consensus 416 ~~~~~hL~~~GI~k~~~l~~~~Kteksl~El~~e~n~~~----~~~f~~~~-l-~~~~g~~~~~~~~p~GL~NlGNTCYm 489 (722)
+-.+.-...||.-.+.+|.+..-..+.......|.-..+ +++..+.. + -....+.....+|++||+|.|.||||
T Consensus 126 hrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlkdPTGVLWHsF~nYnSKkeTGYVGlrNqGATCYm 205 (1089)
T COG5077 126 HRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLKDPTGVLWHSFLNYNSKKETGYVGLRNQGATCYM 205 (1089)
T ss_pred ccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEEeCCccceeecccccccccceeeeeeccCCceeeH
Confidence 345555667998877777776654333332221221111 11111110 0 00001111123789999999999999
Q ss_pred HHHHHHHhcCHHHHHHHHhcccCCcCCCCcchHHHHHHHHHHHHHcCCCCCChHHHHHHHHhccccCCCCCcccHHHHHH
Q 004947 490 NAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIGDGSQEDAHEFLR 569 (722)
Q Consensus 490 NSVLQ~L~sip~F~~~ll~~~~~~~~~~~~~~l~~qL~kL~~~L~s~~~~isP~~f~~~l~~~~~~F~~~~QQDA~EFL~ 569 (722)
||+||.||.+..||+.++..... ...+...+..+|+++|..|+.+..+++..+|...+++ ..+...+|+|.|||-+
T Consensus 206 NSLlQslffi~~FRk~Vy~ipTd--~p~grdSValaLQr~Fynlq~~~~PvdTteltrsfgW--ds~dsf~QHDiqEfnr 281 (1089)
T COG5077 206 NSLLQSLFFIAKFRKDVYGIPTD--HPRGRDSVALALQRLFYNLQTGEEPVDTTELTRSFGW--DSDDSFMQHDIQEFNR 281 (1089)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCC--CCCccchHHHHHHHHHHHHhccCCCcchHHhhhhcCc--ccchHHHHHhHHHHHH
Confidence 99999999999999988764321 1245567889999999999999999999999888764 3566789999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcccccccccccccceEEEEEEEecCCCCeeeeEeeeeeeeecccCccccHHHHHHhcCC
Q 004947 570 LLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGWVESLEDALTQFTS 649 (722)
Q Consensus 570 ~LLd~L~~e~~~~l~~~~~~~~~~~~~s~I~~lF~g~l~s~i~C~~C~~~S~~~e~f~~LsL~Ip~~~~sLed~L~~~~~ 649 (722)
.|.|.|++-+.. ..-...+..+|-|++++.+.|.+-+++|.+.|.|++|+|++.+ ..+|+|.++.|.+
T Consensus 282 Vl~DnLEksmrg-----------t~VEnaln~ifVgkmksyikCvnvnyEsarvedfwdiqlNvK~-~knLqeSfr~yIq 349 (1089)
T COG5077 282 VLQDNLEKSMRG-----------TVVENALNGIFVGKMKSYIKCVNVNYESARVEDFWDIQLNVKG-MKNLQESFRRYIQ 349 (1089)
T ss_pred HHHHHHHHhhcC-----------ChhhhHHhHHHHHHhhceeeEEEechhhhhHHHHHHHHhcccc-hhhHHHHHHHhhh
Confidence 999999874311 1112357899999999999999999999999999999999997 7999999999999
Q ss_pred CcccCCCCccccCcCCceeeEEEEEEeccccceeEEEEEeEEEc----CeEeEEecccccceecc
Q 004947 650 PEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQVS----CYLLMRVRPLYVTLLLL 710 (722)
Q Consensus 650 ~E~ldg~nky~C~~C~~k~~a~K~~~I~~lP~vLiI~LkRF~~~----~~~k~k~~v~f~~~l~~ 710 (722)
.|+++|+|+|.|+.-| .++|.|-.-|.+||+||.+|||||.|| ...|+..+-.||..+++
T Consensus 350 vE~l~GdN~Y~ae~~G-lqdAkKGViFeSlPpVlhlqLKRFeyDfe~d~mvKINDryEFP~eiDl 413 (1089)
T COG5077 350 VETLDGDNRYNAEKHG-LQDAKKGVIFESLPPVLHLQLKRFEYDFERDMMVKINDRYEFPLEIDL 413 (1089)
T ss_pred heeccCCccccccccc-chhhccceeeccCchHHHHHHHHhccccccCceeeecccccCcchhcc
Confidence 9999999999999855 799999999999999999999999975 45566667777765544
No 24
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=4.2e-26 Score=278.94 Aligned_cols=275 Identities=21% Similarity=0.242 Sum_probs=209.9
Q ss_pred CCccccccccCchhhcccccccccccchhhhhhhhcccceeccccch---hhhccccccccCcCCcCcccCCCcchHHHH
Q 004947 416 AQGSNVVSKMGIMKMMGLRKSTKLRQDSSELWHDQHRKLKMLFPYEE---FLKLFQYEVIDLLSPRGLLNCGNSCYANAV 492 (722)
Q Consensus 416 ~~~~~hL~~~GI~k~~~l~~~~Kteksl~El~~e~n~~~~~~f~~~~---l~~~~g~~~~~~~~p~GL~NlGNTCYmNSV 492 (722)
+.+...-..||-..+....+..+.+...++.....- ........ ....+...... ..++||.|+||||||||+
T Consensus 110 h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~v~~~~~~~~~~d~k~~t-g~~vGL~N~GaTCY~Nsl 185 (1093)
T KOG1863|consen 110 HVFTADERDWGFSCFSTSSDIRKPEDGYVRNGLEKL---EKRVRVEQPTSLMNPYDSKRLT-GFPVGLKNLGATCYVNSL 185 (1093)
T ss_pred hcccccccchhhccchhHhhccCcccccccccceee---eeeeeeecCCcccchhhhhhcC-CCCccccCCCceeeehHH
Confidence 334444455665556666676777666655332111 11111111 11122222211 345999999999999999
Q ss_pred HHHHhcCHHHHHHHHhcccCCcCCCCcchHHHHHHHHHHHHHcCCC-CCChHHHHHHHHhccccCCCCCcccHHHHHHHH
Q 004947 493 LQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAG-PLSPGRILSHMRSISCQIGDGSQEDAHEFLRLL 571 (722)
Q Consensus 493 LQ~L~sip~F~~~ll~~~~~~~~~~~~~~l~~qL~kL~~~L~s~~~-~isP~~f~~~l~~~~~~F~~~~QQDA~EFL~~L 571 (722)
||+|+.++.||+.+++.........+...+..+|+.||..|+.+.. ++++..+...+++.. .....|||++||+..|
T Consensus 186 lQ~lf~~~~FR~~Vy~~~~~~~~~~~~~~v~~~lq~lF~~LQ~s~~k~Vdt~~~~~~~~~~~--~~~~~QqDvqEf~~~l 263 (1093)
T KOG1863|consen 186 LQVLFLIPEFRRAVYSIPPFTGHEDPRRSIPLALQRLFYELQMSKRKYVDTSELTKSLGWDS--NDSFEQQDVQEFLTKL 263 (1093)
T ss_pred HHHHHccHHHHHHHhcCCCCCCcccccchHHHHHHHHHHHHhhcCCCCcCchhhhhhhhccc--ccHHhhhhHHHHHHHH
Confidence 9999999999999988654333345666799999999999998776 999999999998755 4567999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCcccccccccccccceEEEEEEEecCCCCeeeeEeeeeeeeecccCccccHHHHHHhcCCCc
Q 004947 572 VASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGWVESLEDALTQFTSPE 651 (722)
Q Consensus 572 Ld~L~~e~~~~l~~~~~~~~~~~~~s~I~~lF~g~l~s~i~C~~C~~~S~~~e~f~~LsL~Ip~~~~sLed~L~~~~~~E 651 (722)
+|.|++.+.... ....|.++|.|.+.+.+.|..|...+.+.|.|+++.|++.+ ..+|.++|+.|+..|
T Consensus 264 ~d~LE~~~~~~~-----------~~~~l~~lf~g~~~~~i~c~~~~~~s~r~e~f~d~ql~~~g-~~nl~~sf~~y~~~E 331 (1093)
T KOG1863|consen 264 LDWLEDSMIDAK-----------VENTLQDLFTGKMKSVIKCIDVDFESSRSESFLDLQLNGKG-VKNLEDSLHLYFEAE 331 (1093)
T ss_pred HHHHHhhccchh-----------hhhhhhhhhcCCcceEEEEEeeeeeccccccccCccccccc-hhhHHHHHHHhhhHH
Confidence 999998653211 24568999999999999999999999999999999999998 678999999999999
Q ss_pred ccCCCCccccCcCCceeeEEEEEEeccccceeEEEEEeEEEcC--eEeEEec--ccccceec
Q 004947 652 DLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQVSC--YLLMRVR--PLYVTLLL 709 (722)
Q Consensus 652 ~ldg~nky~C~~C~~k~~a~K~~~I~~lP~vLiI~LkRF~~~~--~~k~k~~--v~f~~~l~ 709 (722)
.++|+|+ +|..|...+.|.|...+.+||+||.|||+||.|+. ..+.|+. ..||..+.
T Consensus 332 ~l~gdn~-~~~~~~~~~~a~k~~~f~~lPpvl~~qL~Rf~~~~~~~~~~Ki~d~~~fp~~i~ 392 (1093)
T KOG1863|consen 332 ILLGDNK-YDAECHGLQDAKKGVLFDSLPPVLFIQLMRFEYDFSTGQKIKINDKFEFPLIID 392 (1093)
T ss_pred HhcCCcc-ccccccchhhhhcceeeccCCchhhhhhhheeeeccCCceeehhhccCCccccc
Confidence 9999999 89999999999999999999999999999999963 3445553 34444433
No 25
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=99.93 E-value=7.8e-26 Score=232.72 Aligned_cols=183 Identities=32% Similarity=0.461 Sum_probs=139.9
Q ss_pred CcCcccCCCcchHHHHHHHHhcCHHHHHHHHhcc-----cCCcCCCCcchHHHHHHHHHHHHHcC---CCCCChHHHHHH
Q 004947 477 PRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRS-----HSSACCGKDWCLMCELEQHVMMLRES---AGPLSPGRILSH 548 (722)
Q Consensus 477 p~GL~NlGNTCYmNSVLQ~L~sip~F~~~ll~~~-----~~~~~~~~~~~l~~qL~kL~~~L~s~---~~~isP~~f~~~ 548 (722)
|+||.|.||||||||+||+|+++|+|+++++... ..........+++++|+.|+..|+.. ...+.|..|+..
T Consensus 1 ~~Gl~N~gntCylNs~lQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~~~~~~~ 80 (269)
T PF00443_consen 1 PVGLQNIGNTCYLNSVLQCLFHIPPFRNYLLSYNSEKENNESNPSKKIKEFLQQLQNLFRSLWSSNSSDSSISPSDFINA 80 (269)
T ss_dssp --EESBSSSTHHHHHHHHHHHTSHHHHHHHHTTCHHHHHHCSSTTSCTCHHHHHHHHHHHHHHSSCSSSSEEHCHHHHHH
T ss_pred CCCcEeCCCchHHhHHHHhhhhhhhhhhhhhhcccchhhccccccccccchhhhhhhhhhhhhhhcccccceeecccccc
Confidence 5899999999999999999999999999998751 12222345568999999999999976 468999999999
Q ss_pred HHhccccCCCCCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccccceEEEEEEEecCCCCeeeeEeeeee
Q 004947 549 MRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMD 628 (722)
Q Consensus 549 l~~~~~~F~~~~QQDA~EFL~~LLd~L~~e~~~~l~~~~~~~~~~~~~s~I~~lF~g~l~s~i~C~~C~~~S~~~e~f~~ 628 (722)
++...+.|..+.||||+|||..||+.|++++.................+++.++|++.+.+.++|..|+..
T Consensus 81 l~~~~~~~~~~~qqDa~E~l~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~c~~c~~~--------- 151 (269)
T PF00443_consen 81 LSSINPSFSNGEQQDAHEFLSFLLDWLDEEFNSSFKRKSWKNTNSSEDSLISDLFGGQFESSIKCSSCKNS--------- 151 (269)
T ss_dssp HHHHCGGGGSSSTEEHHHHHHHHHHHHHHHHTSCSSHHHHHHHHCCEESHHHHHH-EEEEEEEEETTTTCE---------
T ss_pred ccccccccccccccchhhhhcccccccchhhcccccccccccccccccccccccccccccccccccccccc---------
Confidence 99999899999999999999999999999864321100000111235677899999999999999999888
Q ss_pred eeecccCccccHHHHHHhcCCCcccCCCCccccCcCCceeeEEEEEEeccccceeEEEEEeEEEcC----eEeEEecccc
Q 004947 629 LTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQVSC----YLLMRVRPLY 704 (722)
Q Consensus 629 LsL~Ip~~~~sLed~L~~~~~~E~ldg~nky~C~~C~~k~~a~K~~~I~~lP~vLiI~LkRF~~~~----~~k~k~~v~f 704 (722)
...|.++|+||+|+|+||.++. ..|....+.|
T Consensus 152 --------------------------------------------~~~~~~~P~~L~i~l~R~~~~~~~~~~~K~~~~v~~ 187 (269)
T PF00443_consen 152 --------------------------------------------QSSISSLPPILIIQLKRFEFDQETGRSKKINNPVEF 187 (269)
T ss_dssp --------------------------------------------EEEEEEBBSEEEEEEE-EEEESTSSEEEE--CEEB-
T ss_pred --------------------------------------------ccccccccceeeeccccceecccccccccccccccc
Confidence 5679999999999999997653 3455557777
Q ss_pred c-ceecccc
Q 004947 705 V-TLLLLPI 712 (722)
Q Consensus 705 ~-~~l~~Pl 712 (722)
| ..+++..
T Consensus 188 ~~~~l~l~~ 196 (269)
T PF00443_consen 188 PLEELDLSP 196 (269)
T ss_dssp -SSEEEGGG
T ss_pred Cchhhhhhh
Confidence 7 5666553
No 26
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.92 E-value=4.3e-25 Score=226.78 Aligned_cols=157 Identities=20% Similarity=0.290 Sum_probs=127.1
Q ss_pred CcccCCCcchHHHHHHHHhcCHHHHHHHHhcccCCcCCCCcchHHHHHHHHHHHHHcCCCCCChHHHHHHHHhccccCCC
Q 004947 479 GLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIGD 558 (722)
Q Consensus 479 GL~NlGNTCYmNSVLQ~L~sip~F~~~ll~~~~~~~~~~~~~~l~~qL~kL~~~L~s~~~~isP~~f~~~l~~~~~~F~~ 558 (722)
||.|.||||++|+|.|+|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~------------------------------------------------------------ 20 (228)
T cd02665 1 GLKNVGNTCWFSAVIQSLFS------------------------------------------------------------ 20 (228)
T ss_pred CccccCcchhHHHHHHHHHH------------------------------------------------------------
Confidence 89999999999999999986
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccccceEEEEEEEecCCCCeeeeEeeeeeeeecccCccc
Q 004947 559 GSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGWVE 638 (722)
Q Consensus 559 ~~QQDA~EFL~~LLd~L~~e~~~~l~~~~~~~~~~~~~s~I~~lF~g~l~s~i~C~~C~~~S~~~e~f~~LsL~Ip~~~~ 638 (722)
.||||+||++.||+.|++++..... ...+.....++|.++|+|++.+++.| |+..+.+.|+|++|+|+|.+ ..
T Consensus 21 -~QQDa~Ef~~~Lld~Le~~l~~~~~---~~~~~~~~~~~i~~lF~G~~~~~~~~--~~~~s~~~E~F~~L~l~i~~-~~ 93 (228)
T cd02665 21 -QQQDVSEFTHLLLDWLEDAFQAAAE---AISPGEKSKNPMVQLFYGTFLTEGVL--EGKPFCNCETFGQYPLQVNG-YG 93 (228)
T ss_pred -HHHHHHHHHHHHHHHHHHHhccccc---cccccccccchHhhceEEEEEEEEEE--CCCcccccCccEEEEEEECC-CC
Confidence 7999999999999999998643211 01112235678999999999988777 78889999999999999987 58
Q ss_pred cHHHHHHhcCCCcccCCCCccccCcCCceeeEEEEEEeccccceeEEEEEeEEEcC--eEeEEeccccccee
Q 004947 639 SLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQVSC--YLLMRVRPLYVTLL 708 (722)
Q Consensus 639 sLed~L~~~~~~E~ldg~nky~C~~C~~k~~a~K~~~I~~lP~vLiI~LkRF~~~~--~~k~k~~v~f~~~l 708 (722)
+|++||+.|+.++.+++++ |.. ...+.++..|.++|+||+|||+||.++. ..|+..++.||..+
T Consensus 94 ~L~e~L~~~~~ee~l~~~~---~~~---~~~~~~~~~i~~lP~vL~i~LkRF~~~~~~~~Ki~~~v~FP~~l 159 (228)
T cd02665 94 NLHECLEAAMFEGEVELLP---SDH---SVKSGQERWFTELPPVLTFELSRFEFNQGRPEKIHDKLEFPQII 159 (228)
T ss_pred CHHHHHHHhhhhccccccc---ccc---hhhhhhhhhhhhCChhhEEEeEeeEEcCCccEECCEEEEeeCcc
Confidence 9999999999999999743 222 3346677789999999999999999965 34555566776655
No 27
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=8e-25 Score=246.39 Aligned_cols=234 Identities=31% Similarity=0.480 Sum_probs=199.4
Q ss_pred cCCcCcccCCCcchHHHHHHHHhcCHHHHHHHHhcccCCcCCCC-cchHHHHHHHHHHHHHcCC--CCCChHHHHHHHHh
Q 004947 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGK-DWCLMCELEQHVMMLRESA--GPLSPGRILSHMRS 551 (722)
Q Consensus 475 ~~p~GL~NlGNTCYmNSVLQ~L~sip~F~~~ll~~~~~~~~~~~-~~~l~~qL~kL~~~L~s~~--~~isP~~f~~~l~~ 551 (722)
.+.+||.|+|+||+||++||.|.+.+..+...+...|......+ ..|+.+++.+++..+++.. .++.|..++..+|+
T Consensus 159 ~~l~g~~n~g~tcfmn~ilqsl~~~~~~~~~~l~~~h~~~~~~~~~~~l~~~~~~~~~~~~s~~~~~~~sp~~~l~~~~k 238 (492)
T KOG1867|consen 159 LGLRGLRNLGSTCFMNVILQSLLHDPLSRSSFLSGIHSKEPSSSGSSCLVCDLDRLFQALYSGHNRTPYSPFELLNLVWK 238 (492)
T ss_pred ecccccccccHHHHHHHHHHHhhccchhhccchhhhcccCCCCCCCcchhhhhhhhhhHhhcCCCCCCcChHHHHHHHHH
Confidence 56799999999999999999999999999998888888666555 7899999999999998765 58999999999999
Q ss_pred ccccCCCCCcccHHHHHHHHHHHHHHHHHhhcCCCCC--CCcccccccccccccceEEEEEEEecCCCCeeeeEeeeeee
Q 004947 552 ISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESK--VDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDL 629 (722)
Q Consensus 552 ~~~~F~~~~QQDA~EFL~~LLd~L~~e~~~~l~~~~~--~~~~~~~~s~I~~lF~g~l~s~i~C~~C~~~S~~~e~f~~L 629 (722)
..+.+.++.||||+||+..+++.++.+. ...+... .....+-.+++..+|.|.+...++|..|+..+.++++|++|
T Consensus 239 ~~~~~~g~~Qqda~eF~~~~~~~~~~~~--~~~~k~~~~~~~~~~c~~iv~~~F~G~L~~~v~c~~c~~~S~~~dpf~di 316 (492)
T KOG1867|consen 239 HSPNLAGYEQQDAHEFLIALLDRLHREK--DDCGKSLIASQSNKQCPCIVHTIFSGTLQSDVTCQTCGSKSTTYDPFMDI 316 (492)
T ss_pred hCcccccccccchHHHHHHhcccccccc--cccccccccccCCcccccccceeecceeccceeehhhcceeeeccCccce
Confidence 9999999999999999999999999875 1101000 01111346789999999999999999999999999999999
Q ss_pred eecccCcc---------ccHHHHHHhcCCCcccCCCCccccCcCCceeeEEEEEEeccccceeEEEEEeEEEcCe---Ee
Q 004947 630 TLEIYGWV---------ESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQVSCY---LL 697 (722)
Q Consensus 630 sL~Ip~~~---------~sLed~L~~~~~~E~ldg~nky~C~~C~~k~~a~K~~~I~~lP~vLiI~LkRF~~~~~---~k 697 (722)
+|+||... .++.+|+..+...+......+++|..|+.++.++|+..|.++|.+|.+||+||.+... .|
T Consensus 317 sL~i~~~~~~~~~~~~~~~~~~cl~~~~~~~~~~~~~~~~c~~c~~~~~~~kql~~~~lP~~l~~~lkRfe~~~~~~~~k 396 (492)
T KOG1867|consen 317 SLDIPDQFTSSSVRSPELTLLDCLDRFTRSEQLGKDSKYKCSSCKSKQESTKQLTIRKLPAVLCLHLKRFEHSATGAREK 396 (492)
T ss_pred eeecchhccCcccccchhhhhhhhhhhhhhhhcCcccccccCCcccccccccccccccCCceeeeeeccccccccccccc
Confidence 99999532 6799999999999998888999999999999999999999999999999999986432 25
Q ss_pred EEecccccceecc
Q 004947 698 MRVRPLYVTLLLL 710 (722)
Q Consensus 698 ~k~~v~f~~~l~~ 710 (722)
+...+.||..+.+
T Consensus 397 i~~~v~fp~~l~m 409 (492)
T KOG1867|consen 397 IDSYVSFPVLLNM 409 (492)
T ss_pred cCcccccchhhcC
Confidence 5566677665544
No 28
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.90 E-value=8.5e-24 Score=214.00 Aligned_cols=166 Identities=36% Similarity=0.514 Sum_probs=139.8
Q ss_pred CcccCCCcchHHHHHHHHhcCHHHHHHHHhcccCCcCCCCcchHHHHHHHHHHHHHcCCCCCChHHHHHHHHhccccCCC
Q 004947 479 GLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIGD 558 (722)
Q Consensus 479 GL~NlGNTCYmNSVLQ~L~sip~F~~~ll~~~~~~~~~~~~~~l~~qL~kL~~~L~s~~~~isP~~f~~~l~~~~~~F~~ 558 (722)
||.|.||+||+||+||+|++
T Consensus 1 Gl~N~~n~Cy~ns~lq~l~~------------------------------------------------------------ 20 (255)
T cd02257 1 GLNNLGNTCYLNSVLQALFS------------------------------------------------------------ 20 (255)
T ss_pred CccccCcchHHhHHHHHHHH------------------------------------------------------------
Confidence 89999999999999999998
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccccceEEEEEEEecCCCCeeeeEeeeeeeeecccCc--
Q 004947 559 GSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGW-- 636 (722)
Q Consensus 559 ~~QQDA~EFL~~LLd~L~~e~~~~l~~~~~~~~~~~~~s~I~~lF~g~l~s~i~C~~C~~~S~~~e~f~~LsL~Ip~~-- 636 (722)
.||||+|||..+|+.|++++...... ........+.+.++|++.+.+++.|..|+..+.....+..++|++|..
T Consensus 21 -~q~Da~E~l~~ll~~l~~~~~~~~~~---~~~~~~~~~~i~~~F~~~~~~~~~c~~c~~~~~~~~~~~~l~l~~~~~~~ 96 (255)
T cd02257 21 -EQQDAHEFLLFLLDKLHEELKKSSKR---TSDSSSLKSLIHDLFGGKLESTIVCLECGHESVSTEPELFLSLPLPVKGL 96 (255)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhhccc---ccccccCCchhhhhcccEEeeEEECCCCCCCccCcccceeEEeeccCCCC
Confidence 89999999999999999987542211 111123456799999999999999999999988888888888888865
Q ss_pred -cccHHHHHHhcCCCcccCCCCccccCcCC--ceeeEEEEEEeccccceeEEEEEeEEEcC---eEeEEecccccceecc
Q 004947 637 -VESLEDALTQFTSPEDLDGENMYKCARCA--TYVRARKQLSIHEAPNILTIVLKRFQVSC---YLLMRVRPLYVTLLLL 710 (722)
Q Consensus 637 -~~sLed~L~~~~~~E~ldg~nky~C~~C~--~k~~a~K~~~I~~lP~vLiI~LkRF~~~~---~~k~k~~v~f~~~l~~ 710 (722)
..+|+++|+.++.++.+++ +.|..|+ +.+.+.++..|.++|+||+|+|+||.++. ..|....+.++..+.+
T Consensus 97 ~~~~l~~~l~~~~~~e~~~~---~~~~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~k~~~~v~~~~~l~~ 173 (255)
T cd02257 97 PQVSLEDCLEKFFKEEILEG---DNCYKCEKKKKQEATKRLKIKKLPPVLIIHLKRFSFNEDGTKEKLNTKVSFPLELDL 173 (255)
T ss_pred CCCcHHHHHHHhhhhhccCC---CCcccCCCCcccceeEEEecccCCceeEEEeeceeeccccccccCCCeEeCCCcccC
Confidence 5899999999999999998 7888888 68889999999999999999999999865 3455556677766655
Q ss_pred c
Q 004947 711 P 711 (722)
Q Consensus 711 P 711 (722)
.
T Consensus 174 ~ 174 (255)
T cd02257 174 S 174 (255)
T ss_pred c
Confidence 3
No 29
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=4.8e-24 Score=239.06 Aligned_cols=159 Identities=29% Similarity=0.388 Sum_probs=120.4
Q ss_pred cCCcCcccCCCcchHHHHHHHHhcCHHHHHHHHhcccCCcC-----------------CCCcchHHHHHHHHHHHHHcCC
Q 004947 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSAC-----------------CGKDWCLMCELEQHVMMLRESA 537 (722)
Q Consensus 475 ~~p~GL~NlGNTCYmNSVLQ~L~sip~F~~~ll~~~~~~~~-----------------~~~~~~l~~qL~kL~~~L~s~~ 537 (722)
...+||.|||||||+|||||+|..+|.++..|.....+... ..+...+..+|..|..+.....
T Consensus 203 ~~VrGL~NLGNTCFFNavMQnL~qt~~L~d~l~e~~~Sgt~v~I~~~~~s~l~~L~~el~~~g~lt~al~~~~e~~e~~k 282 (877)
T KOG1873|consen 203 YIVRGLTNLGNTCFFNAVMQNLAQTPALRDVLKEEKESGTSVKIRPPLDSSLSPLFSELSSPGPLTYALANLLEMSETTK 282 (877)
T ss_pred ccccccccccchhhHHHHHHHHhhcHHHHHHHHhhccCCceeEecCccccchhhHHHhccCCcchhHHHHhhhhhhhccC
Confidence 34589999999999999999999999999999764332100 1244667788888777777778
Q ss_pred CCCChHHHHHHHHhccccCCCCCcccHHHHHHHHHHHHHHHHHhhc--------CCCC--------------CCCccccc
Q 004947 538 GPLSPGRILSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICLERH--------GGES--------------KVDPRLQE 595 (722)
Q Consensus 538 ~~isP~~f~~~l~~~~~~F~~~~QQDA~EFL~~LLd~L~~e~~~~l--------~~~~--------------~~~~~~~~ 595 (722)
+.|+|+.|...+...++.|.++.||||||+|+.|||.|..|-.... +.+. -..+..+.
T Consensus 283 sv~~Pr~lF~~~C~k~pqF~g~~QhDsHELLR~LLD~l~~EE~~~~kk~Il~~fG~~t~~l~scle~~q~sKvYe~f~~~ 362 (877)
T KOG1873|consen 283 SVITPRTLFGQFCSKAPQFRGYDQHDSHELLRCLLDSLRSEESRRRKKNILSNFGGETSSLVSCLECGQKSKVYEPFKDL 362 (877)
T ss_pred CccCHHHHHHHHHHhCCcccccccccHHHHHHHHHHhhhHHHHHHHHHhHHHhhCccccchhhhhhccchhhcccccccC
Confidence 8999999999999999999999999999999999999987632211 1110 00111223
Q ss_pred ccccccccceEEEEEEEecCCCCeeeeEeeeeeeeeccc
Q 004947 596 TTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIY 634 (722)
Q Consensus 596 ~s~I~~lF~g~l~s~i~C~~C~~~S~~~e~f~~LsL~Ip 634 (722)
..++..+|.+-+.+.+.|..|. ++...+.|.+.+|||-
T Consensus 363 ~~~vp~~~~~~~~s~~~~~~~~-vss~~~s~~~~t~pv~ 400 (877)
T KOG1873|consen 363 SLPVPLSFNGPLTSQIECQACD-VSSVHESFLSETLPVL 400 (877)
T ss_pred CcccccccCCCcccchhhhccc-eeccchhhcccccccc
Confidence 4455578888888888888888 7777788888888773
No 30
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=5.9e-24 Score=234.99 Aligned_cols=197 Identities=26% Similarity=0.371 Sum_probs=160.4
Q ss_pred cCCcCcccCCCcchHHHHHHHHhcCHHHHHHHHhcccCCcCCCCcchHHHHHHHHHHHHHcCCCCCChHHHHHHHHhccc
Q 004947 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISC 554 (722)
Q Consensus 475 ~~p~GL~NlGNTCYmNSVLQ~L~sip~F~~~ll~~~~~~~~~~~~~~l~~qL~kL~~~L~s~~~~isP~~f~~~l~~~~~ 554 (722)
.+++||+|..-+||+|+.+|+|+..|+|++.++.. ...++....+.+.+++-.
T Consensus 85 ~~yvglvnqa~~~~l~~~~~a~~~~~~~~~~~yts--------------------------~~~~~et~dlt~sfgw~s- 137 (1203)
T KOG4598|consen 85 HRYVGLVNQASNDLLFEQSCAISLHDSGISKCYTS--------------------------ENDSLETKDLTQSFGWTS- 137 (1203)
T ss_pred cceEeehhhHHHHHHHHHhhhhccChhhhhhhhCC--------------------------CcccccchhhHhhcCCCc-
Confidence 56799999999999999999999999999877521 122344445555554321
Q ss_pred cCCCCCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccccceEEEEEEEecCCCCeeeeEeeeeeeeeccc
Q 004947 555 QIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIY 634 (722)
Q Consensus 555 ~F~~~~QQDA~EFL~~LLd~L~~e~~~~l~~~~~~~~~~~~~s~I~~lF~g~l~s~i~C~~C~~~S~~~e~f~~LsL~Ip 634 (722)
-..++|+|.+|+-+.++|.|+..+.. ......|.+++.|.+...+.|..|+..+.+.+.|++|+|++.
T Consensus 138 -~ea~~qhdiqelcr~mfdalehk~k~-----------t~~~~li~~ly~g~m~d~v~cl~c~~e~~~~d~fld~pl~v~ 205 (1203)
T KOG4598|consen 138 -NEAYDQHDVQELCRLMFDALEHKWKG-----------TEHEKLIQDLYRGTMEDFVACLKCGRESVKTDYFLDLPLAVK 205 (1203)
T ss_pred -chhhhhhhHHHHHHHHHHHHHhhhcC-----------chHHHHHHHHhcchHHHHHHHHHcCccccccceeeccccccc
Confidence 22468999999999999999875421 122357999999999999999999999999999999999997
Q ss_pred C-----ccccHHHHHHhcCCCcccCCCCccccCcCCceeeEEEEEEeccccceeEEEEEeEEEc--CeEeEEe--ccccc
Q 004947 635 G-----WVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQVS--CYLLMRV--RPLYV 705 (722)
Q Consensus 635 ~-----~~~sLed~L~~~~~~E~ldg~nky~C~~C~~k~~a~K~~~I~~lP~vLiI~LkRF~~~--~~~k~k~--~v~f~ 705 (722)
. ...+++++|..|.+||.+||.|+|.|++|+++.+|.|-.+|+.||-+|+||||||.|+ ....+|+ ++.||
T Consensus 206 pfg~~~ay~sieeal~afvqpe~ldg~nqy~ce~ck~k~dahkgl~~~~fpy~lt~~lkrfdfdy~tmhriklnd~~tfp 285 (1203)
T KOG4598|consen 206 PFGAIHAYKSVEEALTAFVQPELLDGSNQYMCENCKSKQDAHKGLRITQFPYLLTIQLKRFDFDYNTMHRIKLNDKMTFP 285 (1203)
T ss_pred CCcchhhhhhHHHHHHHhcChhhcCCccHHHHhhhhhhhhhhcCceeeccceeeEEeeecccccchheeeeeecccccCc
Confidence 3 2579999999999999999999999999999999999999999999999999999875 3334444 55666
Q ss_pred ceecc
Q 004947 706 TLLLL 710 (722)
Q Consensus 706 ~~l~~ 710 (722)
+.+++
T Consensus 286 ~~l~l 290 (1203)
T KOG4598|consen 286 DVLDL 290 (1203)
T ss_pred ccccH
Confidence 65544
No 31
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=3.3e-23 Score=248.02 Aligned_cols=160 Identities=21% Similarity=0.317 Sum_probs=133.8
Q ss_pred cCCcCcccCCCcchHHHHHHHHhcCHHHHHHHHhcccCCcC-----CCCcchHHHHHHHHHHHHHcCCC-CCChHHHHHH
Q 004947 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSAC-----CGKDWCLMCELEQHVMMLRESAG-PLSPGRILSH 548 (722)
Q Consensus 475 ~~p~GL~NlGNTCYmNSVLQ~L~sip~F~~~ll~~~~~~~~-----~~~~~~l~~qL~kL~~~L~s~~~-~isP~~f~~~ 548 (722)
.+.+||.|+||||||||.+|||.+.+.++.+++...+..+. ......+...+..+...+|.... .+.|..+...
T Consensus 244 ~g~~Gl~nlGntcfmns~~q~l~~~~~l~e~f~~~~~~~ein~~n~~~~~~~~~~~~~~l~~~~~s~~~~~v~~~~~~~~ 323 (842)
T KOG1870|consen 244 RGETGLSNLGNTCFMNSALQCLSNTPELLEYFLSDLYDREINESNPLGSAGEVASSFADLIKQLWSGNKSAVAPTSFRTS 323 (842)
T ss_pred ccccccccCCccccchhhhhhhccCcchhHHHHhHhhHhhhcccCCCcccceechhhhhHHHHhccCCccccCchhhhhh
Confidence 57799999999999999999999999999999876544422 23445677788889999988765 7999999999
Q ss_pred HHhccccCCCCCcccHHHHHHHHHHHHHHHHHhhcCCCCC------------------CCcccccccccccccceEEEEE
Q 004947 549 MRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESK------------------VDPRLQETTFIQHTFGGRLWSK 610 (722)
Q Consensus 549 l~~~~~~F~~~~QQDA~EFL~~LLd~L~~e~~~~l~~~~~------------------~~~~~~~~s~I~~lF~g~l~s~ 610 (722)
+..+.+.|.++.|||.+||+-+|+|.+|+.+......... ......+.+.|.++|.|.+++.
T Consensus 324 ~~~~a~~~~g~~q~d~~E~lafllDglhedl~~~~~kpy~~~~d~~~rp~~~~~~~~~~~~~~~~~s~i~d~~~~~~~S~ 403 (842)
T KOG1870|consen 324 LASFASEFSGYGQQDSQELLAFLLDGLHEDLNRVSSKPYVEGKDSDLRPDQEVAAEVWDYHLKRNRSVIVDLFDGTYKST 403 (842)
T ss_pred hhhccccccCcccccchhhhhHHhhhhhHHhhccCCcCcccccccccchhhhhhHHHHHhhhhhccceeeeeecceeccc
Confidence 9999999999999999999999999999987554322110 0111235688999999999999
Q ss_pred EEecCCCCeeeeEeeeeeeeeccc
Q 004947 611 VKCLRCSHESERYENIMDLTLEIY 634 (722)
Q Consensus 611 i~C~~C~~~S~~~e~f~~LsL~Ip 634 (722)
++|..|++++.++++|..|+|++|
T Consensus 404 ~~c~~C~~~svt~d~f~~Lslp~p 427 (842)
T KOG1870|consen 404 LQCPTCGKVSVTFDPFGYLSLPLP 427 (842)
T ss_pred ccCccCCCceEEeeccccccccCC
Confidence 999999999999999999999998
No 32
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=99.88 E-value=8.6e-22 Score=210.40 Aligned_cols=227 Identities=23% Similarity=0.355 Sum_probs=187.4
Q ss_pred cCcccCCCcchHHHHHHHHhcCHHHHHHHHhcccCCcCCCCcchHHHHHHHHHHHHH-cCC-CCCChHHHHHHHHhcccc
Q 004947 478 RGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLR-ESA-GPLSPGRILSHMRSISCQ 555 (722)
Q Consensus 478 ~GL~NlGNTCYmNSVLQ~L~sip~F~~~ll~~~~~~~~~~~~~~l~~qL~kL~~~L~-s~~-~~isP~~f~~~l~~~~~~ 555 (722)
.||.|.+++||+||+||+|+.+|++++.++... .+....|++|+|.-||++|. .+. ..+.+..|++.++.....
T Consensus 1 ~GlEn~~~nsY~NslLQ~l~f~~~~r~~~l~h~----~c~~e~cL~cELgfLf~ml~~~~~g~~cq~sNflr~l~~~~~a 76 (295)
T PF13423_consen 1 SGLENHIPNSYCNSLLQVLYFIPPLRNFLLSHL----ECPKEFCLLCELGFLFDMLDSKAKGINCQASNFLRALSWIPEA 76 (295)
T ss_pred CCCcCCCCcchHHHHHHHHHhCHHHHHHHHhCc----CCCccccHHHHHHHHHHHhhhhcCCCcChHHHHHHHHhcCHHH
Confidence 499999999999999999999999999999866 26778999999999999998 544 468899999999887554
Q ss_pred CCCCCcccHHHHHHHHHHHHHHHHHhhcCCC--CCCCcccccccccccccceEEEEEEEecCCCCeeeeEeeeeeeeecc
Q 004947 556 IGDGSQEDAHEFLRLLVASMQSICLERHGGE--SKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEI 633 (722)
Q Consensus 556 F~~~~QQDA~EFL~~LLd~L~~e~~~~l~~~--~~~~~~~~~~s~I~~lF~g~l~s~i~C~~C~~~S~~~e~f~~LsL~I 633 (722)
..-+.|+|.++|+++||+.|+.++....... ..........+.|.++|+......++|..|+.++.+.+....+.|..
T Consensus 77 ~~l~~~~~iq~~~~Fll~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~c~~c~~~~~~~~~~~~~~l~y 156 (295)
T PF13423_consen 77 AALGLQQDIQSLNRFLLEQLSMELLTFKPDIFHTSENSSSSPESSISQLFGTSFETTIRCTSCGHESVKESSTLVLDLPY 156 (295)
T ss_pred HhcchhHHHHHHHHHHHHHHhHHHHhcCcccccccccccCCCcchHHHHhCcceeeeecccccCCeEEeecceeeeeccC
Confidence 5567799999999999999999876543221 11122234567899999999999999999999999999999999988
Q ss_pred cC--ccccHHHHHHhcCCCcccCCCCccccCcCCceeeEEEEEEeccccceeEEEEEeEEEcCeEeEE--ecccccceec
Q 004947 634 YG--WVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQVSCYLLMR--VRPLYVTLLL 709 (722)
Q Consensus 634 p~--~~~sLed~L~~~~~~E~ldg~nky~C~~C~~k~~a~K~~~I~~lP~vLiI~LkRF~~~~~~k~k--~~v~f~~~l~ 709 (722)
|. ...++.++|+.++..+.... ..|++|++.+....+..|.++|+||.|.++|+..+.....+ ..+.+|..+.
T Consensus 157 p~~~~~~tf~~~Le~sl~~e~~~~---a~C~~C~~~~~~~~~r~i~~LPpVL~In~~~~~~~~~w~~~~~~~~~ip~~i~ 233 (295)
T PF13423_consen 157 PPSNSNVTFSQVLEHSLNREQQTR---AWCEKCNKYQPTEQRRTIRSLPPVLSINLNRYSEEEFWPKKNWLKIWIPPSIN 233 (295)
T ss_pred CCCCccchHHHHHHHHHhhccccc---ccccccccccceeeeeeccCCCcEEEEEccCCCcccccccccCCceecceeee
Confidence 85 46899999999999999886 89999999999999999999999999999999887322222 2445555444
Q ss_pred cc
Q 004947 710 LP 711 (722)
Q Consensus 710 ~P 711 (722)
+|
T Consensus 234 ~~ 235 (295)
T PF13423_consen 234 LP 235 (295)
T ss_pred cc
Confidence 44
No 33
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.85 E-value=4.9e-22 Score=209.61 Aligned_cols=159 Identities=23% Similarity=0.332 Sum_probs=131.1
Q ss_pred cccccCcCCcCcccCCCcchHHHHHHHHhcCHHHHHHHHhcccCCcCCCCcchHHHHHHHHHHHHHcCCCCCChHHHHHH
Q 004947 469 YEVIDLLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSH 548 (722)
Q Consensus 469 ~~~~~~~~p~GL~NlGNTCYmNSVLQ~L~sip~F~~~ll~~~~~~~~~~~~~~l~~qL~kL~~~L~s~~~~isP~~f~~~ 548 (722)
.+.++.+..+||.|.|.+||+||+||+|+++|+||+++. +....+....|++|+|..||..
T Consensus 7 f~~~n~t~~~gl~~~~~~~y~n~~lq~~~~~~~~~~~~~---~~~~~~~~~~~l~~el~~lfs~---------------- 67 (268)
T cd02672 7 FEFYNKTNYAGLENHITNSYCNSLLQLLYFIPPFRNFTA---IILVACPKESCLLCELGYLFST---------------- 67 (268)
T ss_pred ccccccccccccccCCccchHHHHHHHHHhcHHHHHHHH---hhcccCCcCccHHHHHHHHHHH----------------
Confidence 344445778999999999999999999999999999832 3334466779999999999911
Q ss_pred HHhccccCCCCCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccccceEEEEEEEecCCCCeeeeEeeeee
Q 004947 549 MRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMD 628 (722)
Q Consensus 549 l~~~~~~F~~~~QQDA~EFL~~LLd~L~~e~~~~l~~~~~~~~~~~~~s~I~~lF~g~l~s~i~C~~C~~~S~~~e~f~~ 628 (722)
=.+-|-.+|++.+..+... .+ ..|++++.+.+++..
T Consensus 68 --------------~iq~F~~fll~~i~~~~~~--------------------~~----------~~C~~~s~~~~~~~~ 103 (268)
T cd02672 68 --------------LIQNFTRFLLETISQDQLG--------------------TP----------FSCGTSRNSVSLLYT 103 (268)
T ss_pred --------------HHHHHHHHHHHHHHHHhcc--------------------cC----------CCCCceeecccccee
Confidence 1245778888888754311 01 679999999999999
Q ss_pred eeecccCc----cccHHHHHHhcCCCcccCCCCccccCcCCceeeEEEEEEeccccc----eeEEEEEeEEEc
Q 004947 629 LTLEIYGW----VESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPN----ILTIVLKRFQVS 693 (722)
Q Consensus 629 LsL~Ip~~----~~sLed~L~~~~~~E~ldg~nky~C~~C~~k~~a~K~~~I~~lP~----vLiI~LkRF~~~ 693 (722)
|+|++|.. ..+|++||+.|+.+|.+. ++.|++|++++.+.|+..|.++|+ ||+||||||.+.
T Consensus 104 LsLpip~~~~~~~~sl~~cL~~~~~~E~~~---~~~C~~C~~~~~a~k~~~i~~lP~~L~~VL~i~lkrf~~~ 173 (268)
T cd02672 104 LSLPLGSTKTSKESTFLQLLKRSLDLEKVT---KAWCDTCCKYQPLEQTTSIRHLPDILLLVLVINLSVTNGE 173 (268)
T ss_pred eeeecCccccccCCCHHHHHHHHhhhhhcc---cccccccCcccccEEEEEeecCCCcccceEEEEEeccChh
Confidence 99999953 479999999999998654 499999999999999999999999 999999999863
No 34
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=4.1e-19 Score=188.43 Aligned_cols=239 Identities=24% Similarity=0.284 Sum_probs=169.8
Q ss_pred cCCcCcccCCCcchHHHHHHHHhcCHHHHHHHHhccc-CCcCCCCcchHHHHHHHHHHHHHcC-----------------
Q 004947 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSH-SSACCGKDWCLMCELEQHVMMLRES----------------- 536 (722)
Q Consensus 475 ~~p~GL~NlGNTCYmNSVLQ~L~sip~F~~~ll~~~~-~~~~~~~~~~l~~qL~kL~~~L~s~----------------- 536 (722)
+.|+|+.|-||.|||||+||+|+.+++|.+.+..... .........+++.++..+.....+.
T Consensus 26 i~Prg~ink~n~c~~ns~Lqal~~c~pfy~l~~~i~~~~~~~~~~stp~lda~~~~~~df~n~~~~k~~r~N~~~~~~~~ 105 (420)
T KOG1871|consen 26 IDPRGSINKCNICFMNSILQALLYCSPFYNLLELIKRADGTVKEGSTPLLDASRPASSDFNNDSDAKLPRKNSLRVPEHV 105 (420)
T ss_pred cCCccccccceeEeeHHHHHHHHhCccHHHHHHhhhhhcCceecccchhHHHHHHHHhhccccchhhhhhhccCCccccc
Confidence 5689999999999999999999999999987743221 1111123345555555555443310
Q ss_pred ------------CCCCChHHHHHHHHhc--cccCCCCCcccHHHHHHHHHHHHHHHHHhhcC----CCCC----------
Q 004947 537 ------------AGPLSPGRILSHMRSI--SCQIGDGSQEDAHEFLRLLVASMQSICLERHG----GESK---------- 588 (722)
Q Consensus 537 ------------~~~isP~~f~~~l~~~--~~~F~~~~QQDA~EFL~~LLd~L~~e~~~~l~----~~~~---------- 588 (722)
..++.|..+...++.. .....+|+|+||.|||.++||.||+|+.+... ....
T Consensus 106 ~~~ses~~~d~~~dav~~d~~~~~l~t~~~~e~~~~g~qedAeefl~~~ld~lhee~~~v~~~~~~~n~e~t~~~~i~~~ 185 (420)
T KOG1871|consen 106 VEKSESNKSDLQGDAVKPDPIYLDLLTMSRFESLQVGKQEDAEEFLLDNLDFLHEESSEVPTELVPPNDEFTPRGLINNG 185 (420)
T ss_pred cchhhhhhhcccCccccCCchhhhcccCCchhhccccccccHHHHHHHHHhhhhHHHHhhhhhhcCCccccccccccccc
Confidence 1123333333333321 12335689999999999999999999754210 0000
Q ss_pred ----CC------------------------c--ccccccccccccceEEEEEEEecCCCCeeeeEeeeeeeeecccC-cc
Q 004947 589 ----VD------------------------P--RLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYG-WV 637 (722)
Q Consensus 589 ----~~------------------------~--~~~~~s~I~~lF~g~l~s~i~C~~C~~~S~~~e~f~~LsL~Ip~-~~ 637 (722)
.+ + ..-..++|.++|+|++++.+.-.. ++++.+.++|..|+|+|-. ..
T Consensus 186 n~~n~~s~~e~~~~~~~~~~~~gk~~k~~i~r~~~~~~spiS~ifgg~~rs~l~~~~-nkeS~tlqPF~tlqldiq~~~i 264 (420)
T KOG1871|consen 186 NLCNLDSTEEAGLSESSGVQLLGKIQKTDIPRADSFVRSPISEIFGGQLRSVLYQPS-NKESATLQPFFTLQLDIQSEKI 264 (420)
T ss_pred ccccccchhhcccccCchhhhcCCcccCccCCCCCcccCcHHHhhccccccceeccc-cccccccCccceeeeeeecccc
Confidence 00 0 001257899999999999987654 6778999999999999963 36
Q ss_pred ccHHHHHHhcCCCcccCCCCccccCcCCceeeEEEEEEeccccceeEEEEEeEEEcC---eEeEEecccccceecccccc
Q 004947 638 ESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQVSC---YLLMRVRPLYVTLLLLPILL 714 (722)
Q Consensus 638 ~sLed~L~~~~~~E~ldg~nky~C~~C~~k~~a~K~~~I~~lP~vLiI~LkRF~~~~---~~k~k~~v~f~~~l~~Pll~ 714 (722)
.+++++|+.+...|.+.+ |.-. -+..+.+.+++.+.+||.+|++||+||.|.. ..++-+++.++-.+.++-.-
T Consensus 265 ~sv~~ales~~~re~lp~---~st~-s~~eV~~s~q~~leklp~vlilhlkrF~ye~tgg~~k~~K~i~~~~~l~i~~~~ 340 (420)
T KOG1871|consen 265 HSVQDALESLVARESLPG---YSTK-SGQEVEASSQTTLEKLPPVLILHLKRFVYEKTGGARKLGKKIEYPWTLKISKNC 340 (420)
T ss_pred CCHHHHhhccChhhcccc---eecC-CCCeechhhhhhHhhcchhhhhhhhHHHHHhccchhhhchhhhccceeeechhh
Confidence 899999999999999996 5444 6888999999999999999999999999852 34666677888887777766
Q ss_pred CCce
Q 004947 715 LSGF 718 (722)
Q Consensus 715 lS~f 718 (722)
++.+
T Consensus 341 ~s~g 344 (420)
T KOG1871|consen 341 FSQG 344 (420)
T ss_pred hccc
Confidence 6544
No 35
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=4.7e-19 Score=202.95 Aligned_cols=234 Identities=28% Similarity=0.423 Sum_probs=179.6
Q ss_pred CcCcccCCCcchHH--HHHHHHhcCHHHHHHHHhcccCCcC-CCCcchHHHHHHHHHHHHHc---CCCCCChHHHHHHHH
Q 004947 477 PRGLLNCGNSCYAN--AVLQCLTCTKPLVIYLLRRSHSSAC-CGKDWCLMCELEQHVMMLRE---SAGPLSPGRILSHMR 550 (722)
Q Consensus 477 p~GL~NlGNTCYmN--SVLQ~L~sip~F~~~ll~~~~~~~~-~~~~~~l~~qL~kL~~~L~s---~~~~isP~~f~~~l~ 550 (722)
.-|..|.+++|+-| +|.|.+..+-.++...+........ ......++..+..++..... ....+.|..|...++
T Consensus 232 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~p~~~~~~~~ 311 (587)
T KOG1864|consen 232 VFGTNNFSNTCCCNFQSVEEALYFCRPFREAVLLYLTSLKRSYIIKEELLTCLLDLFSSISSRKKLVGRISPTRFISDLI 311 (587)
T ss_pred ccCccccCccccccchhhHHHHHhhhhhcccccchhhcccchhhhhHHHHHHhhhhccchhhhcccccccCcchhhhhhh
Confidence 45999999999999 9999999888887544332211100 01122333344444433221 234689999999999
Q ss_pred hccccCCCCCcccHHHHHHHHHHHHHHHHHhhcCCCC-CCC---------c-----------ccccccccccccceEEEE
Q 004947 551 SISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGES-KVD---------P-----------RLQETTFIQHTFGGRLWS 609 (722)
Q Consensus 551 ~~~~~F~~~~QQDA~EFL~~LLd~L~~e~~~~l~~~~-~~~---------~-----------~~~~~s~I~~lF~g~l~s 609 (722)
+....|..+.||||+||+.++++.+++.......+.. ... . .......+.++|.|++..
T Consensus 312 ~~~~~f~~~~qQda~eF~~~l~~~~~e~~~~~~~~~~~~~~~~~~~gn~~~~~~~~~~~~~~~~~~~~~v~~lf~g~l~~ 391 (587)
T KOG1864|consen 312 KENELFTNGMQQDAHEFLNFLLNEISETLERESSGTTTKVSPKESDGNSSTSAASWTNKGHHKSLRENWVSKLFQGILTN 391 (587)
T ss_pred hcCCccCchhhccHHHHhhhhccchhhhhhhhccCCcccccccCCCCccccccccccccccccccchhHHHHhhcCeeee
Confidence 9999999999999999999999999887654331111 000 0 012456789999999999
Q ss_pred EEEecCCCCeeeeEeeeeeeeecccC-ccccHHHHHHhcCCCcccCCCCccccCcCCceeeEEEEEEeccccceeEEEEE
Q 004947 610 KVKCLRCSHESERYENIMDLTLEIYG-WVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLK 688 (722)
Q Consensus 610 ~i~C~~C~~~S~~~e~f~~LsL~Ip~-~~~sLed~L~~~~~~E~ldg~nky~C~~C~~k~~a~K~~~I~~lP~vLiI~Lk 688 (722)
+..|..|...+.+.+.|.+++++++. ...++..||+.|..+|.+.|+|+|.|++|...+.|.+...++++|.+|+||||
T Consensus 392 et~Clsc~t~T~~de~f~D~~~~v~~de~~si~~~l~~~~~~e~l~g~nky~c~~c~s~qeae~~l~~k~lp~~L~l~Lk 471 (587)
T KOG1864|consen 392 ETRCLSCETITSRDEGFLDLSVAVEIDENTSITNLLKSFSSTETLSGENKYSCENCCSLQEAERRLKIKKLPYVLTLHLK 471 (587)
T ss_pred eeeeccccccccccccccccceeccccccccHHHHHHHhcchhhccCCCcccccccCchhhHHHhccccCCcceeeeehh
Confidence 99999999999999999999999994 47999999999999999999999999999999999999999999999999999
Q ss_pred eEEEcC----eEeEEecccccceecc
Q 004947 689 RFQVSC----YLLMRVRPLYVTLLLL 710 (722)
Q Consensus 689 RF~~~~----~~k~k~~v~f~~~l~~ 710 (722)
||.++. ..+.-.++.+|-.+.+
T Consensus 472 rfk~~~~~~~~~kl~~~v~~plel~l 497 (587)
T KOG1864|consen 472 RFKYSEQQNRYTKLLYRVVFPLELRL 497 (587)
T ss_pred ccccccccccccccccccccccceee
Confidence 999864 2233335555554444
No 36
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton]
Probab=99.71 E-value=1.6e-16 Score=168.15 Aligned_cols=211 Identities=24% Similarity=0.274 Sum_probs=161.9
Q ss_pred cCCcCcccCCCcchHHHHHHHHhcCHHHHHHHHhcccCCcCCCCcchHHHHHHHHHHHHHcCC---CCCChHHHHHHHHh
Q 004947 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESA---GPLSPGRILSHMRS 551 (722)
Q Consensus 475 ~~p~GL~NlGNTCYmNSVLQ~L~sip~F~~~ll~~~~~~~~~~~~~~l~~qL~kL~~~L~s~~---~~isP~~f~~~l~~ 551 (722)
.|.+||.|+-++=|.|++||+|.+.+++|+|++...... .....+...|..++..||+.+ ..++|.++++++..
T Consensus 132 pG~VGLnNik~~dy~n~vl~~ls~v~PlRnyFl~~~n~~---d~~~~lv~rl~~l~rklw~~r~fk~hvSphe~lqaV~~ 208 (442)
T KOG2026|consen 132 PGFVGLNNIKANDYANAVLQALSHVVPLRNYFLLEENYF---DNLTELVQRLGELIRKLWNPRNFKGHVSPHEFLQAVMK 208 (442)
T ss_pred eeeeccchhhhHHHHHHHHHHHhccchhhhhhccccccc---chhHHHHHHHHHHHHHhcChhhhcccCCHHHHHHHHHH
Confidence 567999999999999999999999999999998753311 222457778889999999875 47999999998865
Q ss_pred c-cccCCCCCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccccceEEEEEEEecC----CCCeeeeEeee
Q 004947 552 I-SCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLR----CSHESERYENI 626 (722)
Q Consensus 552 ~-~~~F~~~~QQDA~EFL~~LLd~L~~e~~~~l~~~~~~~~~~~~~s~I~~lF~g~l~s~i~C~~----C~~~S~~~e~f 626 (722)
. ...|..++|-|+.|||.|||+.||..+ ++. ....++|++.|.|.++..-+=.. --......-+|
T Consensus 209 ~s~k~f~i~~q~DpveFlswllntlhs~l----~~~------k~~~SIi~~~fqG~~ri~k~~~~~~~~~~~~~i~~~~F 278 (442)
T KOG2026|consen 209 LSKKRFRIGQQSDPVEFLSWLLNTLHSDL----RGS------KKASSIIHKSFQGEVRIVKEKQGEASENENKEISVMPF 278 (442)
T ss_pred HhhhheecCCCCCHHHHHHHHHHHHHHHh----CCC------CCchhHhhHhhcceEEeeeeccccccccccceEEEEee
Confidence 4 568899999999999999999999864 222 13458999999999876544332 11224456699
Q ss_pred eeeeecccCc-------------cccHHHHHHhcCCCcccCCCCccccCcCCceeeEEEEEEeccccceeEEEEEeEEEc
Q 004947 627 MDLTLEIYGW-------------VESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQVS 693 (722)
Q Consensus 627 ~~LsL~Ip~~-------------~~sLed~L~~~~~~E~ldg~nky~C~~C~~k~~a~K~~~I~~lP~vLiI~LkRF~~~ 693 (722)
+.|+|++|.. .+.|-+.|..|-....-+ +. +.-.+ ++.++.++|+|||+|++||.-+
T Consensus 279 l~LtLDLP~~plfkD~~e~niiPQV~l~~lL~Kf~g~t~~e----~~-----~~~~~-~rf~l~k~P~ylifh~~rF~kN 348 (442)
T KOG2026|consen 279 LYLTLDLPPPPLFKDVMEKNIIPQVALFDLLKKFDGETVTE----VV-----TPKLA-MRFRLTKLPRYLIFHMKRFKKN 348 (442)
T ss_pred EEEEecCCCCCcccchhhhcccccchHHHHHHHhcCceeee----ec-----chhhh-hheeeecCCceEEEEeeecccc
Confidence 9999999942 478899999887654444 21 11223 8889999999999999999988
Q ss_pred CeEeEEecccccceecccc
Q 004947 694 CYLLMRVRPLYVTLLLLPI 712 (722)
Q Consensus 694 ~~~k~k~~v~f~~~l~~Pl 712 (722)
+|-+.|. |+...||+
T Consensus 349 n~f~ekN----pTl~~f~~ 363 (442)
T KOG2026|consen 349 NFFKEKN----PTLVEFPY 363 (442)
T ss_pred CcccccC----CceeeccC
Confidence 8877776 55555554
No 37
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=8.8e-16 Score=167.15 Aligned_cols=207 Identities=21% Similarity=0.165 Sum_probs=160.9
Q ss_pred cCCcCcccCCCcchHHHHHHHHhcCHHHHHHHHhcccCCcCC---CCcchHHHHHHHHHHHHHcCCCCCChHHHHHHHHh
Q 004947 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACC---GKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRS 551 (722)
Q Consensus 475 ~~p~GL~NlGNTCYmNSVLQ~L~sip~F~~~ll~~~~~~~~~---~~~~~l~~qL~kL~~~L~s~~~~isP~~f~~~l~~ 551 (722)
..|+||.|+|||||||+.+|||..+|++...+-......... ....-+..+++.+|..+... .++.|..+++.+.+
T Consensus 103 ~lp~gl~nlgNtcymnrtVq~lk~v~el~~~~s~~~~~~~~~~t~~~a~~i~~~mR~~f~~~~~~-~~v~pi~llqtl~~ 181 (473)
T KOG1872|consen 103 PLPVGLPNLGNTCYMNRTVQCLKGVPELPDALSLYKRKRGRGDTWERRRRISIETRTCFRPLCEK-GAVAPINLLQTLSS 181 (473)
T ss_pred cCCccccchhHHHHhhhhhhhhhcCccCcchhhccchhccCCchhhhhhhHHHHHHHHHHhhhcc-CCcchHHHHHHHHH
Confidence 346899999999999999999999999887765543222211 12456888999999999887 99999999999999
Q ss_pred ccccCCC------CCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccccceEEEEEEEecCCCCeeee--E
Q 004947 552 ISCQIGD------GSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESER--Y 623 (722)
Q Consensus 552 ~~~~F~~------~~QQDA~EFL~~LLd~L~~e~~~~l~~~~~~~~~~~~~s~I~~lF~g~l~s~i~C~~C~~~S~~--~ 623 (722)
..|.|.. +.||||.|.+..++-.+++.+.... .. ......+..+|++.+..+..|..-...... .
T Consensus 182 ~~Pqfa~~~~~g~~~qqda~ec~~~~m~~l~~~~~~~~----~~---~~~~~~~d~~f~~~~~~t~~~~e~e~~~~~~~~ 254 (473)
T KOG1872|consen 182 QYPQFAEWVEYGIYMQQDAAECWMEEPGMLTEALTVAT----EA---PCLEAEAAAGFGAEFSTTMSCSEGEDEGGGAGR 254 (473)
T ss_pred HhHHHHHHhhhhhHHHHHHhHhHHHhhhheeccccccc----cc---cchhHHHHHhhccccccceeeccCccccccccc
Confidence 8887754 7899999999999999887431110 10 023456788999999999999887766444 7
Q ss_pred eeeeeeeecccCccccHHHHHHhcCCCcccCCCCccccCcCCceeeEEEEEEeccccceeEEEEEeEEEcC
Q 004947 624 ENIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQVSC 694 (722)
Q Consensus 624 e~f~~LsL~Ip~~~~sLed~L~~~~~~E~ldg~nky~C~~C~~k~~a~K~~~I~~lP~vLiI~LkRF~~~~ 694 (722)
|.|..|...|......+...|+.-++.+.. -..+..|......|...|.++|+||+|+.-||.+..
T Consensus 255 E~~~~L~c~i~~~~~~~k~Gl~~~~~e~~~-----K~s~~lgr~a~y~k~~~isrlP~ylTvq~vrf~~k~ 320 (473)
T KOG1872|consen 255 ELVDQLKCIINKTVHDMRFGLKSGLSEEIQ-----KISSILGRPAAYQKVMYISRLPEYLTVQEVRFFSKA 320 (473)
T ss_pred ccccccceEEeeeechhhhhhhhhhhhhhh-----ccCcccCCChHHHHHhHhhcCcccceEEEEEEEecc
Confidence 888889988887777788888776654432 244556767777889999999999999999999854
No 38
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.45 E-value=1e-13 Score=144.05 Aligned_cols=127 Identities=24% Similarity=0.248 Sum_probs=94.6
Q ss_pred CcccCCC-cchHHHHHHHHhcCHHHHHHHHhcccCCcCCCCcchHHHHHHHHHHHHHcCCCCCChHHHHHHHHhccccCC
Q 004947 479 GLLNCGN-SCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIG 557 (722)
Q Consensus 479 GL~NlGN-TCYmNSVLQ~L~sip~F~~~ll~~~~~~~~~~~~~~l~~qL~kL~~~L~s~~~~isP~~f~~~l~~~~~~F~ 557 (722)
|+.|.+| +|||-|+|=+||+
T Consensus 1 g~~~~~~~~cy~d~~~~~~f~----------------------------------------------------------- 21 (241)
T cd02670 1 GAQNHCNVSCYLDALLFAMFA----------------------------------------------------------- 21 (241)
T ss_pred CCccccCceeehHHHHHHHHH-----------------------------------------------------------
Confidence 7899999 9999999999886
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccccceEE-EEEEEecCCCCeeeeEeeeeeeeecccC-
Q 004947 558 DGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRL-WSKVKCLRCSHESERYENIMDLTLEIYG- 635 (722)
Q Consensus 558 ~~~QQDA~EFL~~LLd~L~~e~~~~l~~~~~~~~~~~~~s~I~~lF~g~l-~s~i~C~~C~~~S~~~e~f~~LsL~Ip~- 635 (722)
+|||+.||+.+|++.|+.-+.+ +..++|.|-. .+... +...|.+..|+++.+.
T Consensus 22 --~q~D~~e~~~~l~~~~~~~~~~----------------~~~~~~~~g~~~~~~~-------~~~~e~~l~l~ip~~~~ 76 (241)
T cd02670 22 --EQQDPEEFFNFITDKLLMPLLE----------------PKVDIIHGGKKDQDDD-------KLVNERLLQIPVPDDDD 76 (241)
T ss_pred --HhcCHHHHHHHHHHHHhhhhhh----------------HHHHHHhcCccccccc-------cccccceEEeecccCCC
Confidence 8999999999999998763322 1245555422 11111 3345566666666542
Q ss_pred -ccccHHHHHHhcCCCcccCCCCccccCcCCceeeEEEEEEeccccceeEEEEEeEEEcCe--EeEEecccccceecccc
Q 004947 636 -WVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQVSCY--LLMRVRPLYVTLLLLPI 712 (722)
Q Consensus 636 -~~~sLed~L~~~~~~E~ldg~nky~C~~C~~k~~a~K~~~I~~lP~vLiI~LkRF~~~~~--~k~k~~v~f~~~l~~Pl 712 (722)
..++|++||+.|++.|. |.++|+||+||||||.++.+ .|+...|.||..|+++.
T Consensus 77 ~~~~tLedcLe~~~~~e~-----------------------i~~lP~vLiIhLKRF~~~~~~~~Kl~~~I~fP~~Ldl~~ 133 (241)
T cd02670 77 GGGITLEQCLEQYFNNSV-----------------------FAKAPSCLIICLKRYGKTEGKAQKMFKKILIPDEIDIPD 133 (241)
T ss_pred CCcCCHHHHHHHHhchhh-----------------------hhhCCCeEEEEEEccccCCCcceeCCcEECCCCcCCchh
Confidence 36899999999999776 89999999999999999763 45555778887766654
No 39
>PF01753 zf-MYND: MYND finger; InterPro: IPR002893 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MYND-type zinc finger domains. The MYND domain (myeloid, Nervy, and DEAF-1) is present in a large group of proteins that includes RP-8 (PDCD2), Nervy, and predicted proteins from Drosophila, mammals, Caenorhabditis elegans, yeast, and plants [, , ]. The MYND domain consists of a cluster of cysteine and histidine residues, arranged with an invariant spacing to form a potential zinc-binding motif []. Mutating conserved cysteine residues in the DEAF-1 MYND domain does not abolish DNA binding, which suggests that the MYND domain might be involved in protein-protein interactions []. Indeed, the MYND domain of ETO/MTG8 interacts directly with the N-CoR and SMRT co-repressors [, ]. Aberrant recruitment of co-repressor complexes and inappropriate transcriptional repression is believed to be a general mechanism of leukemogenesis caused by the t(8;21) translocations that fuse ETO with the acute myelogenous leukemia 1 (AML1) protein. ETO has been shown to be a co-repressor recruited by the promyelocytic leukemia zinc finger (PLZF) protein []. A divergent MYND domain present in the adenovirus E1A binding protein BS69 was also shown to interact with N-CoR and mediate transcriptional repression []. The current evidence suggests that the MYND motif in mammalian proteins constitutes a protein-protein interaction domain that functions as a co-repressor-recruiting interface. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3QWW_A 3QWV_A 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3RU0_A ....
Probab=98.87 E-value=6.2e-10 Score=82.25 Aligned_cols=37 Identities=62% Similarity=1.218 Sum_probs=34.1
Q ss_pred ccCcccccccccCCCCcceEcchhhhhhhchHhhHHhc
Q 004947 103 CARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVHKQEC 140 (722)
Q Consensus 103 C~~C~~~~~~~Cs~Ck~~~YCs~~CQ~~~W~~~Hk~~C 140 (722)
|..|+++++.+|++|+.++|||++||.+||. .||.+|
T Consensus 1 C~~C~~~~~~~C~~C~~~~YCs~~Cq~~~w~-~Hk~~C 37 (37)
T PF01753_consen 1 CAVCGKPALKRCSRCKSVYYCSEECQRADWP-YHKFEC 37 (37)
T ss_dssp -TTTSSCSSEEETTTSSSEESSHHHHHHHHH-HHCCTH
T ss_pred CcCCCCCcCCcCCCCCCEEecCHHHHHHHHH-HHhhhC
Confidence 7889998888999999999999999999997 999887
No 40
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.68 E-value=2.3e-08 Score=115.98 Aligned_cols=216 Identities=19% Similarity=0.294 Sum_probs=146.9
Q ss_pred cccccCcCCcCcccCCCcchHHHHHHHHhcCHHHHHHHHhcccCCcCCCCcchHHHHHHHHHHHHHcCC-CCCChHHHHH
Q 004947 469 YEVIDLLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESA-GPLSPGRILS 547 (722)
Q Consensus 469 ~~~~~~~~p~GL~NlGNTCYmNSVLQ~L~sip~F~~~ll~~~~~~~~~~~~~~l~~qL~kL~~~L~s~~-~~isP~~f~~ 547 (722)
...++...+.||.-.+-.-|-|++||+|..+|+|+.++++. .|....|++|+|..||.+|..+. .+.....|+.
T Consensus 491 F~~~NqT~yaGLe~~i~N~YcNamiQllyfl~~~r~~vl~H-----~C~~e~CL~CELGFLF~Ml~~S~G~~Cqa~NFlr 565 (1118)
T KOG1275|consen 491 FQDYNQTTYAGLETDIPNSYCNAMIQLLYFLPPIRSIVLRH-----ICTKEFCLLCELGFLFTMLDSSTGDPCQANNFLR 565 (1118)
T ss_pred CcccccceeeccCCCCchHHHHHHHHHHHhccHHHHHHHcC-----ccchhHHHHHHHHHHHHHHhhhcCCccchhHHHH
Confidence 33344466789999999999999999999999999999976 35667899999999999997654 4778888888
Q ss_pred HHHhccc------cCCC----------CCcccHHHHHHHHHHHHHHHHH-hhcCCCCCCCcc---cccccccccccceEE
Q 004947 548 HMRSISC------QIGD----------GSQEDAHEFLRLLVASMQSICL-ERHGGESKVDPR---LQETTFIQHTFGGRL 607 (722)
Q Consensus 548 ~l~~~~~------~F~~----------~~QQDA~EFL~~LLd~L~~e~~-~~l~~~~~~~~~---~~~~s~I~~lF~g~l 607 (722)
+++.... -+.. .--|||..|.........+-.. ..+...+..+.. ......+.+.|+..+
T Consensus 566 af~t~~~a~~LG~vl~d~~~~~~~~~~~liq~~~~~~~set~~~~d~~~~~~~~~s~~~~~~~~~vn~~~~l~q~F~~~~ 645 (1118)
T KOG1275|consen 566 AFRTNPEASALGLVLSDTQISGTVNDDVLIQDAEGFISSETSRHLDCQDCRGLQQSESVDGESFKVNYAPVLQQSFCQEI 645 (1118)
T ss_pred HHhhChHhhhhcccccchhhccccchHHHhhhhhhccchhhhhhhhHHHhhhhhhhhcccCceeeecchhHHHHHhhhHH
Confidence 8875321 1100 0134555444444333222110 000000011111 112347889999999
Q ss_pred EEEEEecCCCCeeeeEeeeeeeeecccCc--------cccHHHHHHhcCC-CcccCCCCccccCcCCceeeEEEEEEecc
Q 004947 608 WSKVKCLRCSHESERYENIMDLTLEIYGW--------VESLEDALTQFTS-PEDLDGENMYKCARCATYVRARKQLSIHE 678 (722)
Q Consensus 608 ~s~i~C~~C~~~S~~~e~f~~LsL~Ip~~--------~~sLed~L~~~~~-~E~ldg~nky~C~~C~~k~~a~K~~~I~~ 678 (722)
+.+..|..|+..+.+......+.|..|+. .-.+.+.|+.-.. .+.+. -.|+.|++......+..+..
T Consensus 646 e~~~~Cg~C~~~~~~~k~l~~~~lsyp~~~~id~~~~~~~F~~iL~R~l~l~kn~~----~~C~~C~k~ep~~q~~~vr~ 721 (1118)
T KOG1275|consen 646 EKSLRCGECGDEKQKSKSLLRKVLSYPNVLLIDTLAKSNNFVEILKRSLSLFKNKQ----AWCETCTKPEPTSQKKNVRS 721 (1118)
T ss_pred HHhhhcccccchhhhhhhhhheeecCCCccchhhcccccchHHHhhhhhhcccccc----cccccccCCCCccccccccc
Confidence 99999999999988877778888888752 1233334432221 12222 58999999999999999999
Q ss_pred ccceeEEEEEeEEEc
Q 004947 679 APNILTIVLKRFQVS 693 (722)
Q Consensus 679 lP~vLiI~LkRF~~~ 693 (722)
+|++|.|...-+...
T Consensus 722 LPd~L~in~~~~~~~ 736 (1118)
T KOG1275|consen 722 LPDCLSINTCLNVHE 736 (1118)
T ss_pred Ccceeeeeeeccchh
Confidence 999999999888753
No 41
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=98.54 E-value=9.6e-09 Score=106.23 Aligned_cols=43 Identities=49% Similarity=1.127 Sum_probs=39.7
Q ss_pred CccccCcccc-cccccCCCCcceEcchhhhhhhchHhhHHhchhh
Q 004947 100 FQLCARCFAP-ATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQQL 143 (722)
Q Consensus 100 ~~~C~~C~~~-~~~~Cs~Ck~~~YCs~~CQ~~~W~~~Hk~~C~~~ 143 (722)
...|..||.+ +.+||+.||.+.||+++||+.||. .||++|..+
T Consensus 319 ~~fCstCG~~ga~KrCs~CKav~YCdqeCQk~hWf-~HKK~C~~L 362 (396)
T KOG1710|consen 319 CQFCSTCGHPGAKKRCSQCKAVAYCDQECQKFHWF-IHKKVCSFL 362 (396)
T ss_pred cccccccCCCCccchhhhhHHHHHHHHHHHHhhhH-HHHHHHHHH
Confidence 4689999975 779999999999999999999999 999999988
No 42
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.00033 Score=81.66 Aligned_cols=100 Identities=23% Similarity=0.340 Sum_probs=58.9
Q ss_pred cccCCCcchHHHHHHHHhcCHHHHHHHHhccc---CC-----cCCCCcchHHHHHHHHHHHHH---cC---CCC--CChH
Q 004947 480 LLNCGNSCYANAVLQCLTCTKPLVIYLLRRSH---SS-----ACCGKDWCLMCELEQHVMMLR---ES---AGP--LSPG 543 (722)
Q Consensus 480 L~NlGNTCYmNSVLQ~L~sip~F~~~ll~~~~---~~-----~~~~~~~~l~~qL~kL~~~L~---s~---~~~--isP~ 543 (722)
|+|.||+||.||+||+|..+|+|+..+..... .. ..........+....+-.... .. ... ++-.
T Consensus 34 l~n~gn~cy~ns~~Q~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 113 (587)
T KOG1864|consen 34 LVNTGNSCYYNSTLQALSSCPPFVSRVEQLPRLVRPKIEALKDSLNRKKTRIFDEKSLEAVTLNFSKNSSSNESFNLSVT 113 (587)
T ss_pred EeecCCchhhhhHHHHHhhccHHHHHHHHHHHhcccccccCchhhccccccchhHHHHHHHHHhhhccCCccccccchHH
Confidence 99999999999999999999999877754211 10 000111222222222221111 11 011 2223
Q ss_pred HHHHHHH---hccccCCCCCcccHHHHHHHHHHHHHHHH
Q 004947 544 RILSHMR---SISCQIGDGSQEDAHEFLRLLVASMQSIC 579 (722)
Q Consensus 544 ~f~~~l~---~~~~~F~~~~QQDA~EFL~~LLd~L~~e~ 579 (722)
.+...+. +....|....|+||++|+.-|+-.+...+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~l~~~~~~~~ 152 (587)
T KOG1864|consen 114 QLVQSRLNNGKKYAEFNNNDQRDAHNFLLELMAMVDDVM 152 (587)
T ss_pred HHHHHHhhhhhhhhhhhcccHhhhhhhhhhhhHHHhhhc
Confidence 3333332 23456888999999999999998887653
No 43
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.56 E-value=0.00098 Score=74.94 Aligned_cols=42 Identities=36% Similarity=0.902 Sum_probs=38.2
Q ss_pred ccccCcccccccccCCCCcceEcchhhhhhhchHhhHHhchhhhh
Q 004947 101 QLCARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQQLEK 145 (722)
Q Consensus 101 ~~C~~C~~~~~~~Cs~Ck~~~YCs~~CQ~~~W~~~Hk~~C~~~~~ 145 (722)
-=|++|..++...| |-.+.||+.+||..||+ .|++.|+.-..
T Consensus 528 QWC~nC~~EAiy~C--CWNTSYCsveCQQ~HW~-~H~ksCrrk~~ 569 (588)
T KOG3612|consen 528 QWCYNCLDEAIYHC--CWNTSYCSVECQQGHWP-EHRKSCRRKKT 569 (588)
T ss_pred HHHHhhhHHHHHHh--hccccccCcchhhccch-hHhhhhcccCC
Confidence 47999999999998 88999999999999999 99999997543
No 44
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=94.44 E-value=0.028 Score=58.55 Aligned_cols=175 Identities=13% Similarity=0.220 Sum_probs=90.5
Q ss_pred ccCCCcchHHHHHHHHhcCHHHHHHHHhcccCCcCCCCcchHHHHHHHHHHHHHcC--------CCCCChHHHHHHHHhc
Q 004947 481 LNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRES--------AGPLSPGRILSHMRSI 552 (722)
Q Consensus 481 ~NlGNTCYmNSVLQ~L~sip~F~~~ll~~~~~~~~~~~~~~l~~qL~kL~~~L~s~--------~~~isP~~f~~~l~~~ 552 (722)
.|.-|.|++-++|-+|.++..++..+-.... +..+++ .+|+..|... ...+......
T Consensus 6 ~N~~aLCWLDciLsaLVh~~~Lk~~~~~~~~------~e~s~~---~~L~~~Y~qa~~ll~~~q~~~~~~~~~~------ 70 (275)
T PF15499_consen 6 KNSNALCWLDCILSALVHLESLKNAVTELCS------KEESVF---WRLFTKYNQANKLLHTCQLDGVKDDDCK------ 70 (275)
T ss_pred cCccccHHHHHHHHHHHHHHHHHHHHhhhcc------ccccHH---HHHHHHHHHHHHHHHhhhhcCCCCcccc------
Confidence 5888999999999999999999987754221 122333 3333333210 0011100000
Q ss_pred cccCCCCCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCc--------ccccccccccccceEEEEEEEecCCCCeeee--
Q 004947 553 SCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDP--------RLQETTFIQHTFGGRLWSKVKCLRCSHESER-- 622 (722)
Q Consensus 553 ~~~F~~~~QQDA~EFL~~LLd~L~~e~~~~l~~~~~~~~--------~~~~~s~I~~lF~g~l~s~i~C~~C~~~S~~-- 622 (722)
......=.+|...|..+-+.|=..+...++-+-.... ..+....+.++|...+.=...|..||+....
T Consensus 71 --~~~~~~l~~ae~~Ln~vR~~iF~~LqPkL~C~LG~~ESPVFAlPLLLk~d~~~E~lF~~sf~WeFeC~~Cg~~~~~R~ 148 (275)
T PF15499_consen 71 --KVPSEILAKAETCLNEVRMEIFIQLQPKLRCKLGDMESPVFALPLLLKLDPWIEKLFLYSFSWEFECSQCGHKYQNRC 148 (275)
T ss_pred --cCchHHHHHHHHHHHHHHHHHHHHhCccCCCCCCCccCcHHHhHHHHhcchHHHhHhheeeEEEEEccccCChhhhhh
Confidence 0000011123333333322222222222211100000 0123456789999999999999999987432
Q ss_pred EeeeeeeeecccCccccHHHHHHhcCCCcccCCCCccccCcCCceeeEEEEEEeccccceeEEEE
Q 004947 623 YENIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVL 687 (722)
Q Consensus 623 ~e~f~~LsL~Ip~~~~sLed~L~~~~~~E~ldg~nky~C~~C~~k~~a~K~~~I~~lP~vLiI~L 687 (722)
.-....++=-||+. ..|..+ +.--|.+|+.+.. +++..+.++|+||.+|+
T Consensus 149 ~K~L~TFtnv~pdw-hPLnA~-------------h~~pCn~C~~ksQ-~rkMvlekv~~vfmLHF 198 (275)
T PF15499_consen 149 TKTLVTFTNVIPDW-HPLNAV-------------HFGPCNSCNSKSQ-RRKMVLEKVPPVFMLHF 198 (275)
T ss_pred eeeecccCCCCCCC-Cccccc-------------ccCCCcccCChHH-hHhhhhhcCchhhhhhh
Confidence 11222333334431 111111 1247999987654 45567899999999985
No 45
>KOG2061 consensus Uncharacterized MYND Zn-finger protein [General function prediction only]
Probab=93.55 E-value=0.053 Score=59.15 Aligned_cols=52 Identities=38% Similarity=0.793 Sum_probs=44.6
Q ss_pred CCCCCccccCcccccccccCCCCcceEcchhhhhhhchHhhHHhchhhhhcc
Q 004947 96 SKNGFQLCARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQQLEKTS 147 (722)
Q Consensus 96 ~~~~~~~C~~C~~~~~~~Cs~Ck~~~YCs~~CQ~~~W~~~Hk~~C~~~~~~~ 147 (722)
...+...|..|+..+...|..|+.+.|||..+|..||...|+..|...+...
T Consensus 132 ~~~~~~~~~~~~~~a~~~~~~~~~a~~~S~~~q~~d~~~~~~~a~aq~~~~~ 183 (362)
T KOG2061|consen 132 DKDGADLCGSCGCSAPAACSPCKAAAYCSKKHQSLDWPKGHKDACAQPSTLG 183 (362)
T ss_pred cCcccchhccCcccCcccccccchhhhcCchhhcccccccccccccCccccc
Confidence 3445588999998899999999999999999999999977999998765444
No 46
>PLN03158 methionine aminopeptidase; Provisional
Probab=92.64 E-value=0.082 Score=59.36 Aligned_cols=42 Identities=33% Similarity=0.777 Sum_probs=35.5
Q ss_pred CCCccccCcccccccccCCCCc-------ceEcchhhhhhhchHhhHHhc
Q 004947 98 NGFQLCARCFAPATTRCSRCKS-------VRYCSGKCQIIHWRQVHKQEC 140 (722)
Q Consensus 98 ~~~~~C~~C~~~~~~~Cs~Ck~-------~~YCs~~CQ~~~W~~~Hk~~C 140 (722)
.....|..|++++.+.|-.|.. .++||.+|=+..|+ .||..=
T Consensus 7 ~~~~~c~~c~~~a~l~Cp~C~k~~~~~~~s~fCsq~CFk~~w~-~Hk~~h 55 (396)
T PLN03158 7 TSPLACARCSKPAHLQCPKCLELKLPREGASFCSQDCFKAAWS-SHKSVH 55 (396)
T ss_pred CCcccccCCCCcccccCccchhcCCCCCCceeECHHHHHHHHH-HHHHHH
Confidence 3446799999998899999853 78999999999999 888764
No 47
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51
Probab=89.11 E-value=0.35 Score=38.98 Aligned_cols=43 Identities=26% Similarity=0.552 Sum_probs=36.1
Q ss_pred cccCccc----ccccccCCCCcceEcchhhhhhhchHhhHHhchhhhh
Q 004947 102 LCARCFA----PATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQQLEK 145 (722)
Q Consensus 102 ~C~~C~~----~~~~~Cs~Ck~~~YCs~~CQ~~~W~~~Hk~~C~~~~~ 145 (722)
.|..|+. .....|..|....|||++.=..|.. .|++.|..+..
T Consensus 1 ~Cpv~~~~~~~~v~~~Cp~cGipthcS~ehw~~D~e-~H~~~c~~LRq 47 (55)
T PF13824_consen 1 LCPVCKKDLPAHVNFECPDCGIPTHCSEEHWEDDYE-EHRQLCERLRQ 47 (55)
T ss_pred CCCCCccccccccCCcCCCCCCcCccCHHHHHHhHH-HHHHHHHHHHH
Confidence 3667775 4567999999999999998888888 89999998865
No 48
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=84.49 E-value=0.44 Score=47.46 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=16.0
Q ss_pred CcCcccCCCcchHHHHHHHHhc
Q 004947 477 PRGLLNCGNSCYANAVLQCLTC 498 (722)
Q Consensus 477 p~GL~NlGNTCYmNSVLQ~L~s 498 (722)
.+|+.|.+|+|++||++|.+..
T Consensus 33 ft~~PN~~dnCWlNaL~QL~~~ 54 (193)
T PF05408_consen 33 FTGLPNNHDNCWLNALLQLFRY 54 (193)
T ss_dssp EE----SSSTHHHHHHHHHHHH
T ss_pred EecCCCCCCChHHHHHHHHHHH
Confidence 4699999999999999999864
No 49
>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the HIT-type zinc finger, which contains 7 conserved cysteines and one histidine that can potentially coordinate two zinc atoms. It has been named after the first protein that originally defined the domain: the yeast HIT1 protein (P46973 from SWISSPROT) []. The HIT-type zinc finger displays some sequence similarities to the MYND-type zinc finger. The function of this domain is unknown but it is mainly found in nuclear proteins involved in gene regulation and chromatin remodeling. This domain is also found in the thyroid receptor interacting protein 3 (TRIP-3) Q15649 from SWISSPROT, that specifically interacts with the ligand binding domain of the thyroid receptor. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2YQP_A 2YQQ_A 1X4S_A.
Probab=81.77 E-value=0.74 Score=32.56 Aligned_cols=28 Identities=50% Similarity=1.096 Sum_probs=21.6
Q ss_pred ccccCcccccccccCCCCcceEcchhhhh
Q 004947 101 QLCARCFAPATTRCSRCKSVRYCSGKCQI 129 (722)
Q Consensus 101 ~~C~~C~~~~~~~Cs~Ck~~~YCs~~CQ~ 129 (722)
..|..|+..+.-+|.+|.. .|||.+|-+
T Consensus 3 ~~C~vC~~~~kY~Cp~C~~-~~CSl~C~k 30 (30)
T PF04438_consen 3 KLCSVCGNPAKYRCPRCGA-RYCSLACYK 30 (30)
T ss_dssp EEETSSSSEESEE-TTT---EESSHHHHH
T ss_pred CCCccCcCCCEEECCCcCC-ceeCcEeEC
Confidence 4799999988889999996 599999963
No 50
>KOG3362 consensus Predicted BBOX Zn-finger protein [General function prediction only]
Probab=78.48 E-value=0.96 Score=43.23 Aligned_cols=36 Identities=31% Similarity=0.638 Sum_probs=30.5
Q ss_pred CCCCccccCcccccccccCCCCcceEcchhhhhhhch
Q 004947 97 KNGFQLCARCFAPATTRCSRCKSVRYCSGKCQIIHWR 133 (722)
Q Consensus 97 ~~~~~~C~~C~~~~~~~Cs~Ck~~~YCs~~CQ~~~W~ 133 (722)
.+..+.|+.||-...-.|..|.. +||+..|-..|-.
T Consensus 115 KP~r~fCaVCG~~S~ysC~~CG~-kyCsv~C~~~Hne 150 (156)
T KOG3362|consen 115 KPLRKFCAVCGYDSKYSCVNCGT-KYCSVRCLKTHNE 150 (156)
T ss_pred CCcchhhhhcCCCchhHHHhcCC-ceeechhhhhccc
Confidence 35567999999889999999994 7999999987754
No 51
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein. The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.
Probab=76.83 E-value=6.3 Score=43.14 Aligned_cols=74 Identities=19% Similarity=0.227 Sum_probs=40.8
Q ss_pred CcccCCCcchHHHHHHHHhcCHH-HHHHHHhcccCCcCCCCcchHHHHHHHHHHHHHcCCCCCChHHHHHHHHhccccCC
Q 004947 479 GLLNCGNSCYANAVLQCLTCTKP-LVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIG 557 (722)
Q Consensus 479 GL~NlGNTCYmNSVLQ~L~sip~-F~~~ll~~~~~~~~~~~~~~l~~qL~kL~~~L~s~~~~isP~~f~~~l~~~~~~F~ 557 (722)
=|.=.-|.||+||++=.|-++.. |+. -+++.+...+..+ +|..|...+-.. ....
T Consensus 104 ~Lkq~dNNCwVna~~~~LQ~~~~~f~~-------------------~~l~~aw~~f~~G----~~~~fVa~~Ya~-~~~~ 159 (320)
T PF08715_consen 104 VLKQSDNNCWVNAACLQLQALKIKFKS-------------------PGLDEAWNEFKAG----DPAPFVAWCYAS-TNAK 159 (320)
T ss_dssp EE---TTTHHHHHHHHHHTTST--BSS-------------------HHHHHHHHHHHTT------HHHHHHHHHH-TT--
T ss_pred EEEecCCCcHHHHHHHHHHhcCCccCC-------------------HHHHHHHHHHhCC----ChHHHHHHHHHH-cCCC
Confidence 34445599999999877755432 221 1344555555433 677777666543 3456
Q ss_pred CCCcccHHHHHHHHHHHHH
Q 004947 558 DGSQEDAHEFLRLLVASMQ 576 (722)
Q Consensus 558 ~~~QQDA~EFL~~LLd~L~ 576 (722)
.|+--||+++|..||+.++
T Consensus 160 ~G~~gDa~~~L~~ll~~~~ 178 (320)
T PF08715_consen 160 KGDPGDAEYVLSKLLKDAD 178 (320)
T ss_dssp TTS---HHHHHHHHHTTB-
T ss_pred CCCCcCHHHHHHHHHHhcc
Confidence 6889999999999997553
No 52
>KOG2857 consensus Predicted MYND Zn-finger protein/hormone receptor interactor [Transcription]
Probab=68.21 E-value=2.6 Score=40.23 Aligned_cols=38 Identities=32% Similarity=0.981 Sum_probs=29.4
Q ss_pred CccccCcccc-cccccCCCCcceEcchhhhhhhchHhhHH--hchhh
Q 004947 100 FQLCARCFAP-ATTRCSRCKSVRYCSGKCQIIHWRQVHKQ--ECQQL 143 (722)
Q Consensus 100 ~~~C~~C~~~-~~~~Cs~Ck~~~YCs~~CQ~~~W~~~Hk~--~C~~~ 143 (722)
...|.-|.+. ..-+|..|. +.|||-.| |+ .||. .|...
T Consensus 5 t~tC~ic~e~~~KYKCpkC~-vPYCSl~C----fK-iHk~tPq~~~v 45 (157)
T KOG2857|consen 5 TTTCVICLESEIKYKCPKCS-VPYCSLPC----FK-IHKSTPQCETV 45 (157)
T ss_pred eeeehhhhcchhhccCCCCC-Cccccchh----hh-hccCCcccccc
Confidence 3478888864 467999998 57999999 88 8888 55543
No 53
>COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=62.88 E-value=7.1 Score=32.46 Aligned_cols=36 Identities=22% Similarity=0.523 Sum_probs=29.4
Q ss_pred CccccCcCCceeeEEEEEEec--cccceeEEEEEeEEE
Q 004947 657 NMYKCARCATYVRARKQLSIH--EAPNILTIVLKRFQV 692 (722)
Q Consensus 657 nky~C~~C~~k~~a~K~~~I~--~lP~vLiI~LkRF~~ 692 (722)
++++|++|+...-..|+.... .+.+++=||.++|..
T Consensus 3 ~~~kCpKCgn~~~~ekei~~tg~~lskifdvq~n~f~~ 40 (68)
T COG3478 3 NAFKCPKCGNTNYEEKEIAATGGGLSKIFDVQNNKFIV 40 (68)
T ss_pred ccccCCCcCCcchhhceeeccCCCcceeEEecccEEEE
Confidence 568899999877777766664 689999999999964
No 54
>PF14353 CpXC: CpXC protein
Probab=52.67 E-value=15 Score=34.46 Aligned_cols=49 Identities=18% Similarity=0.413 Sum_probs=26.6
Q ss_pred EEEecCCCCeeeeEeeeeeeeecccCccccHHHHHHhcCCCcccCCCCccccCcCCceee
Q 004947 610 KVKCLRCSHESERYENIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVR 669 (722)
Q Consensus 610 ~i~C~~C~~~S~~~e~f~~LsL~Ip~~~~sLed~L~~~~~~E~ldg~nky~C~~C~~k~~ 669 (722)
+++|..|++..... .+.. ++... ...|-+ ..+..+... |.|+.||....
T Consensus 1 ~itCP~C~~~~~~~-v~~~--I~~~~-~p~l~e---~il~g~l~~----~~CP~Cg~~~~ 49 (128)
T PF14353_consen 1 EITCPHCGHEFEFE-VWTS--INADE-DPELKE---KILDGSLFS----FTCPSCGHKFR 49 (128)
T ss_pred CcCCCCCCCeeEEE-EEeE--EcCcC-CHHHHH---HHHcCCcCE----EECCCCCCcee
Confidence 37899999885532 1122 22211 122333 333444444 99999998653
No 55
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=50.12 E-value=11 Score=30.96 Aligned_cols=32 Identities=25% Similarity=0.536 Sum_probs=23.2
Q ss_pred CccccCcccccccccCCCCcceEcchhhhhhhchHhhHH
Q 004947 100 FQLCARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVHKQ 138 (722)
Q Consensus 100 ~~~C~~C~~~~~~~Cs~Ck~~~YCs~~CQ~~~W~~~Hk~ 138 (722)
.+.|.+||++-.. .-.|||.+|+...++ .+|.
T Consensus 3 HkHC~~CG~~Ip~------~~~fCS~~C~~~~~k-~qk~ 34 (59)
T PF09889_consen 3 HKHCPVCGKPIPP------DESFCSPKCREEYRK-RQKR 34 (59)
T ss_pred CCcCCcCCCcCCc------chhhhCHHHHHHHHH-HHHH
Confidence 4689999975332 256999999987776 5554
No 56
>PRK01343 zinc-binding protein; Provisional
Probab=48.77 E-value=15 Score=29.96 Aligned_cols=29 Identities=28% Similarity=0.693 Sum_probs=22.2
Q ss_pred CccccCcccccccccCCCCcceEcchhhhhhhch
Q 004947 100 FQLCARCFAPATTRCSRCKSVRYCSGKCQIIHWR 133 (722)
Q Consensus 100 ~~~C~~C~~~~~~~Cs~Ck~~~YCs~~CQ~~~W~ 133 (722)
...|..|+++... ....|||+.|+..|--
T Consensus 9 ~~~CP~C~k~~~~-----~~rPFCS~RC~~iDLg 37 (57)
T PRK01343 9 TRPCPECGKPSTR-----EAYPFCSERCRDIDLN 37 (57)
T ss_pred CCcCCCCCCcCcC-----CCCcccCHHHhhhhHH
Confidence 4689999987542 3568999999988753
No 57
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=47.73 E-value=34 Score=29.53 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=15.9
Q ss_pred cch-hhHHHHhHhHHHHHHhhhhHHHH
Q 004947 9 VPV-LFLVLVVLPLVAYVLLGKWSEAA 34 (722)
Q Consensus 9 ~~~-~~~~~~~~p~~~~~~~~kw~~~~ 34 (722)
+|+ +|+++|..+-++.-+..||+...
T Consensus 8 ~Pliif~ifVap~wl~lHY~~k~~~~~ 34 (75)
T TIGR02976 8 IPLIIFVIFVAPLWLILHYRSKRKTAA 34 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCC
Confidence 564 45555555556666778888643
No 58
>PRK09458 pspB phage shock protein B; Provisional
Probab=46.59 E-value=30 Score=29.82 Aligned_cols=41 Identities=17% Similarity=0.326 Sum_probs=23.6
Q ss_pred cc-hhhHHHHhHhHHHHHHhhhhHHHH----HHHHHHHHHHHHHHH
Q 004947 9 VP-VLFLVLVVLPLVAYVLLGKWSEAA----KKRERISLLAQLAAE 49 (722)
Q Consensus 9 ~~-~~~~~~~~~p~~~~~~~~kw~~~~----~~~~r~~lla~~~ae 49 (722)
+| |+|+++|..|-++.=+..||+... ...++...|+..|..
T Consensus 8 ~PliiF~ifVaPiWL~LHY~sk~~~~~~Ls~~d~~~L~~L~~~A~r 53 (75)
T PRK09458 8 IPLTIFVLFVAPIWLWLHYRSKRQGSQGLSQEEQQRLAQLTEKAER 53 (75)
T ss_pred HhHHHHHHHHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 45 445555555555666679998643 455555555555444
No 59
>KOG4317 consensus Predicted Zn-finger protein [Function unknown]
Probab=44.52 E-value=10 Score=40.94 Aligned_cols=36 Identities=39% Similarity=0.842 Sum_probs=28.4
Q ss_pred ccccCccc-ccccccCCCCcceEcchhhhhhhchHhhHHhchh
Q 004947 101 QLCARCFA-PATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQQ 142 (722)
Q Consensus 101 ~~C~~C~~-~~~~~Cs~Ck~~~YCs~~CQ~~~W~~~Hk~~C~~ 142 (722)
-.|..|+. ....+|.||.. .||+-.|- + .|+..|..
T Consensus 8 ~~C~ic~vq~~~YtCPRCn~-~YCsl~CY----r-~h~~~CsE 44 (383)
T KOG4317|consen 8 LACGICGVQKREYTCPRCNL-LYCSLKCY----R-NHKHSCSE 44 (383)
T ss_pred eeccccccccccccCCCCCc-cceeeeee----c-CCCccchH
Confidence 47888886 45589999995 69999995 5 77777864
No 60
>KOG3556 consensus Familial cylindromatosis protein [General function prediction only]
Probab=43.69 E-value=42 Score=38.72 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=19.2
Q ss_pred CcCcccCCCcchHHHHHHHHhcCH
Q 004947 477 PRGLLNCGNSCYANAVLQCLTCTK 500 (722)
Q Consensus 477 p~GL~NlGNTCYmNSVLQ~L~sip 500 (722)
..|+.-.-|+||+||.|=++|.-.
T Consensus 368 ~kgiqgh~nscyldstlf~~f~f~ 391 (724)
T KOG3556|consen 368 IKGIQGHPNSCYLDSTLFKPFEFD 391 (724)
T ss_pred cccccCCcchhhcccccccccccc
Confidence 358888889999999988877543
No 61
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=39.12 E-value=12 Score=41.66 Aligned_cols=109 Identities=18% Similarity=0.243 Sum_probs=63.2
Q ss_pred cCCcCcccCCCcchHHHHHHHHhcCHHHHHHHHhcccCCcCCCCcchHHHHHHHHHHHHHcC-------C--CCCCh---
Q 004947 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRES-------A--GPLSP--- 542 (722)
Q Consensus 475 ~~p~GL~NlGNTCYmNSVLQ~L~sip~F~~~ll~~~~~~~~~~~~~~l~~qL~kL~~~L~s~-------~--~~isP--- 542 (722)
..|+|+.|.||-|+.++..|.+.+..++...+-..... ............+.++|.+...+ . ..+.|
T Consensus 176 ~t~~~~i~~~n~~n~~s~~e~~~~~~~~~~~~gk~~k~-~i~r~~~~~~spiS~ifgg~~rs~l~~~~nkeS~tlqPF~t 254 (420)
T KOG1871|consen 176 FTPRGLINNGNLCNLDSTEEAGLSESSGVQLLGKIQKT-DIPRADSFVRSPISEIFGGQLRSVLYQPSNKESATLQPFFT 254 (420)
T ss_pred ccccccccccccccccchhhcccccCchhhhcCCcccC-ccCCCCCcccCcHHHhhccccccceeccccccccccCccce
Confidence 46799999999999999999999999988766432211 11222222333444555433110 0 01111
Q ss_pred H----------HHHHHHHhc-----cc--------cCCCCCcccHHHHHHHHHHHHHHHHHhhcC
Q 004947 543 G----------RILSHMRSI-----SC--------QIGDGSQEDAHEFLRLLVASMQSICLERHG 584 (722)
Q Consensus 543 ~----------~f~~~l~~~-----~~--------~F~~~~QQDA~EFL~~LLd~L~~e~~~~l~ 584 (722)
. ....++..+ .+ ......|.|+++|...|+..|++...+..+
T Consensus 255 lqldiq~~~i~sv~~ales~~~re~lp~~st~s~~eV~~s~q~~leklp~vlilhlkrF~ye~tg 319 (420)
T KOG1871|consen 255 LQLDIQSEKIHSVQDALESLVARESLPGYSTKSGQEVEASSQTTLEKLPPVLILHLKRFVYEKTG 319 (420)
T ss_pred eeeeeeccccCCHHHHhhccChhhcccceecCCCCeechhhhhhHhhcchhhhhhhhHHHHHhcc
Confidence 0 011112111 11 122347999999999999999997755433
No 62
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=38.96 E-value=65 Score=27.88 Aligned_cols=39 Identities=18% Similarity=0.402 Sum_probs=22.8
Q ss_pred hhhHHHHhHhHHHHHHhhhhHHHH----HHHHHHHHHHHHHHH
Q 004947 11 VLFLVLVVLPLVAYVLLGKWSEAA----KKRERISLLAQLAAE 49 (722)
Q Consensus 11 ~~~~~~~~~p~~~~~~~~kw~~~~----~~~~r~~lla~~~ae 49 (722)
|+|+++|..|-++.-+..||+... ...++...|+..+..
T Consensus 11 ivf~ifVap~WL~lHY~sk~~~~~gLs~~d~~~L~~L~~~a~r 53 (75)
T PF06667_consen 11 IVFMIFVAPIWLILHYRSKWKSSQGLSEEDEQRLQELYEQAER 53 (75)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHH
Confidence 346666666667777778997532 245555555444433
No 63
>KOG2738 consensus Putative methionine aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=37.82 E-value=16 Score=39.43 Aligned_cols=41 Identities=27% Similarity=0.634 Sum_probs=33.7
Q ss_pred Cccc--cCcccccccccCCCC-----cceEcchhhhhhhchHhhHHhch
Q 004947 100 FQLC--ARCFAPATTRCSRCK-----SVRYCSGKCQIIHWRQVHKQECQ 141 (722)
Q Consensus 100 ~~~C--~~C~~~~~~~Cs~Ck-----~~~YCs~~CQ~~~W~~~Hk~~C~ 141 (722)
...| ..|++++...|..|- ..++|+.+|-+..|. .||..=.
T Consensus 6 ~~~c~~~~c~~~a~l~Cp~c~~~~i~~~~fc~q~cf~~~w~-~hK~~h~ 53 (369)
T KOG2738|consen 6 KISCEGLQCGSEASLQCPTCLKLGIKSAYFCAQECFKNSWL-SHKKLHR 53 (369)
T ss_pred hceeeccccCChhhccCchhhhcCCCcccccCchhhhcchh-hhhhhcc
Confidence 4577 778888889998884 567999999999999 8887654
No 64
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=34.77 E-value=25 Score=41.90 Aligned_cols=39 Identities=36% Similarity=0.628 Sum_probs=30.2
Q ss_pred ccccCcc----cccccccCCCC-------cceEcchhhhhhhchHhhHHhc
Q 004947 101 QLCARCF----APATTRCSRCK-------SVRYCSGKCQIIHWRQVHKQEC 140 (722)
Q Consensus 101 ~~C~~C~----~~~~~~Cs~Ck-------~~~YCs~~CQ~~~W~~~Hk~~C 140 (722)
..|+.|. +++...|-.|. ..++|+.+|=+..|+ .||..=
T Consensus 60 ~~~~~c~~h~~~~a~lqCp~C~k~~~~~~~s~fCsq~CFk~~w~-~Hk~~h 109 (606)
T PLN03144 60 RKVAVCSVHPSEPATLQCVGCVKAKLPVSKSYHCSPKCFSDAWR-HHRVLH 109 (606)
T ss_pred ccceeEeecCCCcccccCccchhcCCCcCcceeeCHHHHHHHHH-HHHHHH
Confidence 4666774 56667787774 267999999999999 998764
No 65
>PF09855 DUF2082: Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082); InterPro: IPR018652 This family of proteins contains various hypothetical prokaryotic proteins as well as some Zn-ribbon nucleic-acid-binding proteins.
Probab=32.22 E-value=42 Score=28.10 Aligned_cols=34 Identities=21% Similarity=0.483 Sum_probs=24.9
Q ss_pred cccCcCCceeeEEEEEEec--cccceeEEEEEeEEE
Q 004947 659 YKCARCATYVRARKQLSIH--EAPNILTIVLKRFQV 692 (722)
Q Consensus 659 y~C~~C~~k~~a~K~~~I~--~lP~vLiI~LkRF~~ 692 (722)
|.|++|+...--.++.... .+-+++=||.+||..
T Consensus 1 y~C~KCg~~~~e~~~v~~tgg~~skiFdvq~~~f~~ 36 (64)
T PF09855_consen 1 YKCPKCGNEEYESGEVRATGGGLSKIFDVQNKKFTT 36 (64)
T ss_pred CCCCCCCCcceecceEEccCCeeEEEEEecCcEEEE
Confidence 7899999876555555442 366778899999964
No 66
>PF12855 Ecl1: Life-span regulatory factor; InterPro: IPR024368 The fungal proteins in this entry are involved in the regulation of chronological life-span [, ]. Overexpression of these proteins has been shown to extend the chronological life-span of wild-type strains. The mechanism by which this happens is not known, but microarray data suggests that they may function as pleiptropic stress regulators.
Probab=26.42 E-value=28 Score=26.86 Aligned_cols=30 Identities=20% Similarity=0.474 Sum_probs=20.5
Q ss_pred ccccCcccccccccCCCCcceEcchhhhhhhch
Q 004947 101 QLCARCFAPATTRCSRCKSVRYCSGKCQIIHWR 133 (722)
Q Consensus 101 ~~C~~C~~~~~~~Cs~Ck~~~YCs~~CQ~~~W~ 133 (722)
..|..|.+.-.. ..-..-|||.+|+..|+.
T Consensus 7 ~yC~~Cdk~~~~---~~~~~lYCSe~Cr~~D~~ 36 (43)
T PF12855_consen 7 DYCIVCDKQIDP---PDDGSLYCSEECRLKDQE 36 (43)
T ss_pred hHHHHhhccccC---CCCCccccCHHHHhHhhh
Confidence 467777653211 334466999999999997
No 67
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=26.31 E-value=2.9e+02 Score=26.42 Aligned_cols=51 Identities=25% Similarity=0.417 Sum_probs=26.8
Q ss_pred EEEEEEEecCCCCeeeeEeeeeeeeecccCccccHHHHHHhcCCCcccCCCCccccCcCCce
Q 004947 606 RLWSKVKCLRCSHESERYENIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATY 667 (722)
Q Consensus 606 ~l~s~i~C~~C~~~S~~~e~f~~LsL~Ip~~~~sLed~L~~~~~~E~ldg~nky~C~~C~~k 667 (722)
...-...|..|++.....+.-..| + ..+... -.+.||.+.. -+.|+.||..
T Consensus 66 ~~p~~~~C~~CG~~~~~~~~~~~~----~---~~~~~~--~~~~~~~~~~--~~~CP~Cgs~ 116 (135)
T PRK03824 66 EEEAVLKCRNCGNEWSLKEVKESL----D---EEIREA--IHFIPEVVHA--FLKCPKCGSR 116 (135)
T ss_pred ecceEEECCCCCCEEecccccccc----c---cccccc--cccccccccc--CcCCcCCCCC
Confidence 445678999999775433211111 1 111111 1244555442 2679999965
No 68
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=24.97 E-value=42 Score=24.71 Aligned_cols=21 Identities=29% Similarity=0.732 Sum_probs=14.9
Q ss_pred cccCccc------------ccccccCCCCcceE
Q 004947 102 LCARCFA------------PATTRCSRCKSVRY 122 (722)
Q Consensus 102 ~C~~C~~------------~~~~~Cs~Ck~~~Y 122 (722)
.|.+|+. ....+|++|+.+|.
T Consensus 4 ~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred ECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 6888873 23469999998763
No 69
>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=24.20 E-value=22 Score=27.22 Aligned_cols=29 Identities=38% Similarity=1.015 Sum_probs=20.6
Q ss_pred ccccCcccccc--cccCCC-CcceEcchhhhh
Q 004947 101 QLCARCFAPAT--TRCSRC-KSVRYCSGKCQI 129 (722)
Q Consensus 101 ~~C~~C~~~~~--~~Cs~C-k~~~YCs~~CQ~ 129 (722)
..|..|+.+-. +.-.+| -.|.|||..|..
T Consensus 9 K~C~~C~rpf~WRKKW~~~Wd~VkYCS~rCR~ 40 (42)
T PF10013_consen 9 KICPVCGRPFTWRKKWARCWDEVKYCSDRCRR 40 (42)
T ss_pred CcCcccCCcchHHHHHHHhchhhccHHHHhcc
Confidence 58999997533 344455 368899999974
No 70
>PRK13275 mtrF tetrahydromethanopterin S-methyltransferase subunit F; Provisional
Probab=23.53 E-value=62 Score=27.37 Aligned_cols=18 Identities=50% Similarity=0.827 Sum_probs=14.3
Q ss_pred hhhHHHHhHhHHHHHHhh
Q 004947 11 VLFLVLVVLPLVAYVLLG 28 (722)
Q Consensus 11 ~~~~~~~~~p~~~~~~~~ 28 (722)
++.||||++|..-|.+.+
T Consensus 50 ~~AlvLv~ip~~l~~~~~ 67 (67)
T PRK13275 50 LLALLLVVVPPLLYGLVG 67 (67)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 467789999999888754
No 71
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=22.36 E-value=46 Score=24.43 Aligned_cols=21 Identities=38% Similarity=0.898 Sum_probs=14.6
Q ss_pred cccCccc------------ccccccCCCCcceE
Q 004947 102 LCARCFA------------PATTRCSRCKSVRY 122 (722)
Q Consensus 102 ~C~~C~~------------~~~~~Cs~Ck~~~Y 122 (722)
.|.+|+. ....+|++|..+|+
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 5788873 23368999988764
No 72
>TIGR02507 MtrF tetrahydromethanopterin S-methyltransferase, F subunit. coenzyme M methyltransferase in methanogenic archaea. This methyltranferase is membrane-associated enzyme complex that uses methy-transfer reaction to drive sodium-ion pump. Archaea domain, have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=20.90 E-value=62 Score=27.19 Aligned_cols=16 Identities=25% Similarity=0.546 Sum_probs=12.6
Q ss_pred hhhHHHHhHhHHHHHH
Q 004947 11 VLFLVLVVLPLVAYVL 26 (722)
Q Consensus 11 ~~~~~~~~~p~~~~~~ 26 (722)
++.|+||++|+..++|
T Consensus 50 ~~Al~lV~IP~ll~~l 65 (65)
T TIGR02507 50 LFAVLLVAVPIAMKFL 65 (65)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 4567799999998864
No 73
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=20.77 E-value=1.1e+02 Score=30.95 Aligned_cols=26 Identities=27% Similarity=0.503 Sum_probs=18.8
Q ss_pred hhHHHHhHhHHHHHHhhhhHHHHHHH
Q 004947 12 LFLVLVVLPLVAYVLLGKWSEAAKKR 37 (722)
Q Consensus 12 ~~~~~~~~p~~~~~~~~kw~~~~~~~ 37 (722)
++++++++.+..|+.+|.|......+
T Consensus 14 ~~~~~~~~~~~~Y~~~g~~~~v~~~~ 39 (198)
T PRK10370 14 LTILMVFLCVGSYLLSPKWQAVRAEY 39 (198)
T ss_pred HHHHHHHHHHHHHHHcchHHHHHHHH
Confidence 44556677778899999998875443
Done!