Query 004947
Match_columns 722
No_of_seqs 452 out of 2642
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 10:41:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004947.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004947hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ihp_A Ubiquitin carboxyl-term 100.0 1E-47 3.5E-52 459.4 21.0 298 368-710 259-618 (854)
2 2y6e_A Ubiquitin carboxyl-term 100.0 8.7E-44 3E-48 387.6 22.6 231 475-705 6-280 (367)
3 2gfo_A Ubiquitin carboxyl-term 100.0 1.2E-42 4.2E-47 383.5 22.8 231 475-705 60-317 (396)
4 3nhe_A Ubiquitin carboxyl-term 100.0 1.8E-42 6.2E-47 371.9 19.9 231 475-705 7-265 (348)
5 3i3t_A Ubiquitin carboxyl-term 100.0 3.3E-42 1.1E-46 370.9 19.0 230 476-705 2-275 (355)
6 1nb8_A Ubiquitin carboxyl-term 100.0 9.9E-40 3.4E-44 354.7 22.2 220 475-711 4-227 (353)
7 2ayn_A Ubiquitin carboxyl-term 100.0 5.2E-40 1.8E-44 361.5 15.5 232 475-711 12-266 (404)
8 1vjv_A Ubiquitin carboxyl-term 100.0 3.8E-39 1.3E-43 356.8 17.0 216 475-711 22-258 (415)
9 3mhs_A Ubiquitin carboxyl-term 100.0 2.8E-38 9.5E-43 356.0 20.8 235 475-711 139-394 (476)
10 2f1z_A Ubiquitin carboxyl-term 100.0 1.5E-37 5.3E-42 354.4 21.1 220 475-711 173-396 (522)
11 2vhf_A Ubiquitin carboxyl-term 99.8 7E-20 2.4E-24 196.6 3.4 100 476-577 8-113 (374)
12 2d8q_A BLU protein, zinc finge 99.1 6.5E-11 2.2E-15 98.8 5.2 49 98-147 13-61 (70)
13 2odd_A Protein CBFA2T1; MYND z 99.0 7.8E-11 2.7E-15 96.6 2.9 45 99-144 16-60 (64)
14 2dj8_A Protein CBFA2T1; zinc f 99.0 1.3E-10 4.4E-15 94.1 3.9 45 99-144 14-58 (60)
15 2od1_A Protein CBFA2T1; zinc f 99.0 1.4E-10 4.7E-15 93.9 2.8 46 98-144 11-56 (60)
16 2jw6_A Deformed epidermal auto 98.9 4.3E-10 1.5E-14 88.2 2.8 43 99-142 8-50 (52)
17 3qwp_A SET and MYND domain-con 98.4 1.4E-07 4.6E-12 104.9 4.0 56 93-149 40-97 (429)
18 3qww_A SET and MYND domain-con 98.4 1.4E-07 4.9E-12 105.0 3.6 55 93-148 42-98 (433)
19 3n71_A Histone lysine methyltr 98.2 5.7E-07 2E-11 101.6 3.8 53 94-147 43-97 (490)
20 2g45_A Ubiquitin carboxyl-term 97.8 3.4E-06 1.2E-10 78.3 0.7 52 368-441 78-129 (129)
21 2yqq_A Zinc finger HIT domain- 94.2 0.04 1.4E-06 43.5 3.9 40 97-142 9-48 (56)
22 1x4s_A Protein FON, zinc finge 86.2 0.37 1.3E-05 38.3 2.4 34 101-141 12-49 (59)
23 3mp2_A Non-structural protein 77.0 5.7 0.00019 39.5 7.6 65 480-572 16-80 (211)
24 3c5k_A HD6, histone deacetylas 75.6 0.24 8.2E-06 44.4 -2.4 43 368-428 62-104 (109)
25 2fe8_A PP1AB, ORF1AB, replicas 73.5 7.7 0.00026 40.9 8.0 71 479-573 104-175 (315)
26 1qmy_A Protease, leader protea 50.6 7.5 0.00026 36.1 2.3 31 477-507 13-44 (167)
27 3a43_A HYPD, hydrogenase nicke 49.1 16 0.00056 33.7 4.5 19 606-624 66-84 (139)
28 1lv3_A Hypothetical protein YA 31.7 16 0.00055 29.8 1.2 32 101-133 10-41 (68)
29 1x4w_A Hypothetical protein FL 22.5 52 0.0018 26.7 2.7 27 97-125 12-44 (67)
30 2l8e_A Polyhomeotic-like prote 20.9 30 0.001 26.3 0.9 31 99-130 17-47 (49)
31 2k8j_X P7TM2; P7 polypeptide, 20.2 24 0.00082 23.8 0.2 15 18-32 2-16 (29)
No 1
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=100.00 E-value=1e-47 Score=459.43 Aligned_cols=298 Identities=18% Similarity=0.173 Sum_probs=231.2
Q ss_pred cCCCCcccccccCCccceeeccccchhhhcCCCCCchhhhhhccCCCCCCccccccccCchhhcccccccccccchhhhh
Q 004947 368 AMNPMGTKNCKSAKSCTKVVGDQSCLEKERKGPIADESKAARVRDTIPAQGSNVVSKMGIMKMMGLRKSTKLRQDSSELW 447 (722)
Q Consensus 368 ~~~p~~~k~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~~~s~p~~~~~hL~~~GI~k~~~l~~~~Kteksl~El~ 447 (722)
+.||+.||++++++.+++|+||-|.+.+. +| .+..||++|||+ +.++.||++++.||+
T Consensus 259 ~~H~~~~~l~t~~~~~~~~~cy~~~~~v~-----------------~~-~l~~~l~~~gi~----~~~~~kt~k~~~el~ 316 (854)
T 3ihp_A 259 TGYPLAVKLGTITPDGADVYSYDEDDMVL-----------------DP-SLAEHLSHFGID----MLKMQKTDKTMTELE 316 (854)
T ss_dssp HCCCEEEETTCCBTTBCCEEETTTTEECB-----------------CT-THHHHHHHTTCC----C--------------
T ss_pred cCCcEEEEcCCcCCCCCeEEEccCCCeee-----------------Cc-cHHHHHHHhCcc----cccccccchhhhhhh
Confidence 46999999999999999999998877543 23 678899999999 888999999999999
Q ss_pred hhhcccc-eecc---ccchhhhccccccccCcCCcCcccCCCcchHHHHHHHHhcCHHHHHHHHhcccC---CcCCCCcc
Q 004947 448 HDQHRKL-KMLF---PYEEFLKLFQYEVIDLLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHS---SACCGKDW 520 (722)
Q Consensus 448 ~e~n~~~-~~~f---~~~~l~~~~g~~~~~~~~p~GL~NlGNTCYmNSVLQ~L~sip~F~~~ll~~~~~---~~~~~~~~ 520 (722)
+++|.+| .+.. ....+.+.+++ +++||.|+|||||||||||+|+++|+|+++|+...+. .....+..
T Consensus 317 ~~~n~~~g~~~~~~~~g~~l~p~~~~------G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~ 390 (854)
T 3ihp_A 317 IDMNQRIGEWELIQESGVPLKPLFGP------GYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEKIFQNAPTDPTQ 390 (854)
T ss_dssp ---------------------CCCST------TCCCBCCCSSCHHHHHHHHHHTTSHHHHHHHTTTHHHHHHHCCSCGGG
T ss_pred hhhccccchhhhhcccCcccccccCC------CccceEecCCceehhHHHHHHhCcHHHHHHHHhhhhhhhccccCCccc
Confidence 9999877 3322 12446677765 4599999999999999999999999999999753321 12345678
Q ss_pred hHHHHHHHHHHHHHcC---------------------CCCCChHHHHHHHHhccccCCCCCcccHHHHHHHHHHHHHHHH
Q 004947 521 CLMCELEQHVMMLRES---------------------AGPLSPGRILSHMRSISCQIGDGSQEDAHEFLRLLVASMQSIC 579 (722)
Q Consensus 521 ~l~~qL~kL~~~L~s~---------------------~~~isP~~f~~~l~~~~~~F~~~~QQDA~EFL~~LLd~L~~e~ 579 (722)
++.++|++|+..|+++ ...++|..|+..++..++.|.+++||||+|||.+||+.|++++
T Consensus 391 ~l~~~l~~L~~~L~s~~~s~~~~~~~~~~~~~~~~~~~~~isP~~f~~~l~~~~~~F~~~~QQDA~EFl~~LLd~L~~el 470 (854)
T 3ihp_A 391 DFSTQVAKLGHGLLSGEYSKPVPESGDGERVPEQKEVQDGIAPRMFKALIGKGHPEFSTNRQQDAQEFFLHLINMVERNC 470 (854)
T ss_dssp CHHHHHHHHHHHHHSCC---------------------CCBCCHHHHHHHTTTCTTTTSSSCCBHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHhccccccccccccccccccccccCCCccChHHHHHHHhhhccccccccccCHHHHHHHHHHHHHHHh
Confidence 9999999999999853 3479999999999999999999999999999999999999864
Q ss_pred HhhcCCCCCCCcccccccccccccceEEEEEEEecCCCCeeeeEeeeeeeeecccCc-----------------------
Q 004947 580 LERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGW----------------------- 636 (722)
Q Consensus 580 ~~~l~~~~~~~~~~~~~s~I~~lF~g~l~s~i~C~~C~~~S~~~e~f~~LsL~Ip~~----------------------- 636 (722)
. ..++|.++|+|+++++++|..|+++++++++|++|+|+||..
T Consensus 471 ~--------------~~s~i~~lF~G~l~s~i~C~~C~~vs~t~e~F~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~ 536 (854)
T 3ihp_A 471 R--------------SSENPNEVFRFLVEEKIKCLATEKVKYTQRVDYIMQLPVPMDAALNKEELLEYEEKKRQAEEEKM 536 (854)
T ss_dssp T--------------TSCCGGGGTCEEEEEEEEETTTTEEEEEEEEESEEEECCCGGGCTTHHHHHHHHHHHHHHHHTTC
T ss_pred c--------------ccCCchhhcCceEEEEEEecCCCCEeEEeeeceEEEeeCCccccccccchhhhcccccccccccc
Confidence 1 135689999999999999999999999999999999999952
Q ss_pred --------cccHHHHHHhcCCCcccCCCCccccCcCCceeeEEEEEEeccccceeEEEEEeEEEc-CeE--eEEeccccc
Q 004947 637 --------VESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQVS-CYL--LMRVRPLYV 705 (722)
Q Consensus 637 --------~~sLed~L~~~~~~E~ldg~nky~C~~C~~k~~a~K~~~I~~lP~vLiI~LkRF~~~-~~~--k~k~~v~f~ 705 (722)
..+|++||+.|+.+|.|+| |+|++|+.++.+.|+.+|.++|+||+||||||.++ +|. |+...|.||
T Consensus 537 ~~~~~~~~~~sL~dcL~~f~~~E~Le~---y~C~~C~~k~~a~K~~~i~~lP~vLiihLkRF~~d~~~~~~Ki~~~V~FP 613 (854)
T 3ihp_A 537 ALPELVRAQVPFSSCLEAYGAPEQVDD---FWSTALQAKSVAVKTTRFASFPDYLVIQIKKFTFGLDWVPKKLDVSIEMP 613 (854)
T ss_dssp CCCCCCCEECCHHHHHHHHHSCEEEEE---EEETTTTEEEEEEEEEEESSCCSEEEEEECCEEECGGGCEEECCEECCCC
T ss_pred cccccccCCCCHHHHHHHhcCceEeee---eeccccCCcceeeEEEEeeeCCceEEEEeehheecCCCceEECCeEEecC
Confidence 1599999999999999997 99999999999999999999999999999999995 454 555577777
Q ss_pred ceecc
Q 004947 706 TLLLL 710 (722)
Q Consensus 706 ~~l~~ 710 (722)
..|++
T Consensus 614 ~~LDl 618 (854)
T 3ihp_A 614 EELDI 618 (854)
T ss_dssp SEEEC
T ss_pred CcEeh
Confidence 65554
No 2
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=100.00 E-value=8.7e-44 Score=387.57 Aligned_cols=231 Identities=24% Similarity=0.370 Sum_probs=193.3
Q ss_pred cCCcCcccCCCcchHHHHHHHHhcCHHHHHHHHhcccCCcC-----CCCcchHHHHHHHHHHHHHcCC-CCCChHHHHHH
Q 004947 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSAC-----CGKDWCLMCELEQHVMMLRESA-GPLSPGRILSH 548 (722)
Q Consensus 475 ~~p~GL~NlGNTCYmNSVLQ~L~sip~F~~~ll~~~~~~~~-----~~~~~~l~~qL~kL~~~L~s~~-~~isP~~f~~~ 548 (722)
.+++||.|+|||||||||||||+++|+|+++|+...+.... .....++.++|+.|+..||.+. ..++|..|+..
T Consensus 6 ~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~~~~ 85 (367)
T 2y6e_A 6 PGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMFKTQ 85 (367)
T ss_dssp TTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSSCSEECCHHHHHH
T ss_pred CCCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCCCCCcCHHHHHHH
Confidence 57899999999999999999999999999999875443222 1234689999999999998765 57999999999
Q ss_pred HHhccccCCCCCcccHHHHHHHHHHHHHHHHHhhcCCCCC----CCc--------------ccccccccccccceEEEEE
Q 004947 549 MRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESK----VDP--------------RLQETTFIQHTFGGRLWSK 610 (722)
Q Consensus 549 l~~~~~~F~~~~QQDA~EFL~~LLd~L~~e~~~~l~~~~~----~~~--------------~~~~~s~I~~lF~g~l~s~ 610 (722)
++..++.|.+++||||||||.+|||.|++++......... ... .....++|.++|+|+++++
T Consensus 86 l~~~~~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~~w~~~~~~~~s~i~~~F~G~l~s~ 165 (367)
T 2y6e_A 86 VGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKST 165 (367)
T ss_dssp HHHHCGGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHHHHHHHHHHHHHCCSHHHHHHCEEEEEE
T ss_pred HHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHhhccCCccccccccCCchhHHHHHHHHHHHHhcCCccccccCcEEeee
Confidence 9999999999999999999999999999986332111000 000 0123578999999999999
Q ss_pred EEecCCCCeeeeEeeeeeeeecccCc------------------cccHHHHHHhcCCCcccCCCCccccCcCCceeeEEE
Q 004947 611 VKCLRCSHESERYENIMDLTLEIYGW------------------VESLEDALTQFTSPEDLDGENMYKCARCATYVRARK 672 (722)
Q Consensus 611 i~C~~C~~~S~~~e~f~~LsL~Ip~~------------------~~sLed~L~~~~~~E~ldg~nky~C~~C~~k~~a~K 672 (722)
++|..|++++.++|+|++|+|+||.. ..+|++||+.|+.+|.++|+|+|+|++|++++.|.|
T Consensus 166 ~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~f~~~E~l~~~~~~~C~~C~~~~~a~K 245 (367)
T 2y6e_A 166 LVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGPMLQPQKKKKTTVALRDCIELFTTMETLGEHDPWYCPNCKKHQQATK 245 (367)
T ss_dssp EECTTTCCEEEEEEEESSEEEECCC-------------------CEEHHHHHHHHTSCEECCC-CCEEETTTTEEECCEE
T ss_pred EEeCCCCCEeeeEccCeeEEeeCCCCcCCcceeeeeccccccCCCCCHHHHHHHhcccccCCCCCCccCCCCCCCceEEE
Confidence 99999999999999999999999852 369999999999999999999999999999999999
Q ss_pred EEEeccccceeEEEEEeEEEcCeEeEE--eccccc
Q 004947 673 QLSIHEAPNILTIVLKRFQVSCYLLMR--VRPLYV 705 (722)
Q Consensus 673 ~~~I~~lP~vLiI~LkRF~~~~~~k~k--~~v~f~ 705 (722)
+..|.++|+||+||||||.++.+...| ..|.||
T Consensus 246 ~~~i~~lP~vL~i~LkRF~~~~~~~~K~~~~v~fp 280 (367)
T 2y6e_A 246 KFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFP 280 (367)
T ss_dssp EEEEEECCSEEEEEEECEEECSSCEEECCCCEECC
T ss_pred EEEEecCCcEEEEEEeCeeecCccceecCceEEec
Confidence 999999999999999999998764444 345554
No 3
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=100.00 E-value=1.2e-42 Score=383.49 Aligned_cols=231 Identities=26% Similarity=0.387 Sum_probs=193.9
Q ss_pred cCCcCcccCCCcchHHHHHHHHhcCHHHHHHHHhcccCCc-----CCCCcchHHHHHHHHHHHHHcCC-CCCChHHHHHH
Q 004947 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSA-----CCGKDWCLMCELEQHVMMLRESA-GPLSPGRILSH 548 (722)
Q Consensus 475 ~~p~GL~NlGNTCYmNSVLQ~L~sip~F~~~ll~~~~~~~-----~~~~~~~l~~qL~kL~~~L~s~~-~~isP~~f~~~ 548 (722)
.+++||.|+|||||||||||||+++|+|+++|+...+... ......++.++|..|+..||.+. ..++|..|+..
T Consensus 60 ~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~i~P~~f~~~ 139 (396)
T 2gfo_A 60 PALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKIT 139 (396)
T ss_dssp TTCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHHHHHHHHHHHHHHSCEEEECCHHHHHH
T ss_pred CCcccccccCCchhHhHHHHHhhCCHHHHHHHHcCcchhhhcccCCCCcccHHHHHHHHHHHHHHcCCCceECHHHHHHH
Confidence 5789999999999999999999999999999987543211 12234678999999999998765 47999999999
Q ss_pred HHhccccCCCCCcccHHHHHHHHHHHHHHHHHhhcCCCCCC----Cc--------------ccccccccccccceEEEEE
Q 004947 549 MRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKV----DP--------------RLQETTFIQHTFGGRLWSK 610 (722)
Q Consensus 549 l~~~~~~F~~~~QQDA~EFL~~LLd~L~~e~~~~l~~~~~~----~~--------------~~~~~s~I~~lF~g~l~s~ 610 (722)
++..++.|.+++||||+|||.+|||.|++++.......... +. .....++|.++|+|+++++
T Consensus 140 l~~~~~~f~~~~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G~l~s~ 219 (396)
T 2gfo_A 140 IGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKST 219 (396)
T ss_dssp HHHHCGGGSSSSCCCHHHHHHHHHHHHHHHHCCCCC---------TTSCHHHHHHHHHHHHHHHCCSHHHHHHCEEEEEE
T ss_pred HHHhchhhcCCCCCChHHHHHHHHHHHHHHHhhhccccccccccccccchhhHHHHHHHHhhhccCCccchhhCcEEEEE
Confidence 99999999999999999999999999999864321100000 00 0124578999999999999
Q ss_pred EEecCCCCeeeeEeeeeeeeecccCc-cccHHHHHHhcCCCcccCCCCccccCcCCceeeEEEEEEeccccceeEEEEEe
Q 004947 611 VKCLRCSHESERYENIMDLTLEIYGW-VESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKR 689 (722)
Q Consensus 611 i~C~~C~~~S~~~e~f~~LsL~Ip~~-~~sLed~L~~~~~~E~ldg~nky~C~~C~~k~~a~K~~~I~~lP~vLiI~LkR 689 (722)
++|..|++++.++|+|++|+|+||.. ..+|++||+.|+.+|.++|+|+|+|++|++++.|.|+..|.++|+||+|||+|
T Consensus 220 i~C~~C~~~s~~~e~f~~LsL~ip~~~~~sL~~~L~~f~~~E~l~~~n~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkR 299 (396)
T 2gfo_A 220 VQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKR 299 (396)
T ss_dssp EEETTTCCEEEEEEEESSEEECCSCSSEEEHHHHHHHHTSCEEECSTTCEEETTTTEEECEEEEEEEEECCSEEEEEECC
T ss_pred EEeCCCCceecccccceeeeecccccccCCHHHHHHHhCCcccccCCcccccCCcccccceEEEEEEecCCcEEEEEecc
Confidence 99999999999999999999999964 57999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCeE--eEEeccccc
Q 004947 690 FQVSCYL--LMRVRPLYV 705 (722)
Q Consensus 690 F~~~~~~--k~k~~v~f~ 705 (722)
|.++... |+...|.||
T Consensus 300 F~~~~~~~~K~~~~v~fp 317 (396)
T 2gfo_A 300 FSYDGRWKQKLQTSVDFP 317 (396)
T ss_dssp EEECSSSEEECCCEEECC
T ss_pred eeccCccceecCceEecc
Confidence 9997543 444445555
No 4
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=100.00 E-value=1.8e-42 Score=371.93 Aligned_cols=231 Identities=27% Similarity=0.394 Sum_probs=196.1
Q ss_pred cCCcCcccCCCcchHHHHHHHHhcCHHHHHHHHhcccCCcC---CCCcchHHHHHHHHHHHHHc--CCCCCChHHHHHHH
Q 004947 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSAC---CGKDWCLMCELEQHVMMLRE--SAGPLSPGRILSHM 549 (722)
Q Consensus 475 ~~p~GL~NlGNTCYmNSVLQ~L~sip~F~~~ll~~~~~~~~---~~~~~~l~~qL~kL~~~L~s--~~~~isP~~f~~~l 549 (722)
.+++||.|+|||||||||||+|+++|+|+++++...+.... .....+++++|..|+..|+. ....++|..|+..+
T Consensus 7 ~g~~GL~N~GNtCY~NsvLQ~L~~~~~~r~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~p~~~~~~l 86 (348)
T 3nhe_A 7 QGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWTSSPNDVVSPSEFKTQI 86 (348)
T ss_dssp CSCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTGGGGTSCSSCCTTHHHHHHHHHHHHHHTTCCTTCEECCHHHHHHH
T ss_pred CCCCCCCcCCccHHHHHHHHHHhcCHHHHHHHhcchhhHhhccCCCcccHHHHHHHHHHHHHHcCCCCCccCHHHHHHHH
Confidence 57899999999999999999999999999999876443322 23567899999999999983 34589999999999
Q ss_pred HhccccCCCCCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCcc------------------cccccccccccceEEEEEE
Q 004947 550 RSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPR------------------LQETTFIQHTFGGRLWSKV 611 (722)
Q Consensus 550 ~~~~~~F~~~~QQDA~EFL~~LLd~L~~e~~~~l~~~~~~~~~------------------~~~~s~I~~lF~g~l~s~i 611 (722)
+...+.|.+++||||+|||.+||+.|++++............. ....++|.++|+|++.+++
T Consensus 87 ~~~~~~f~~~~QqDa~Efl~~lLd~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~ 166 (348)
T 3nhe_A 87 QRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSL 166 (348)
T ss_dssp HHHSGGGSSSCCBCHHHHHHHHHHHHHHHHCSCSSCCCCCCCCCTTSCHHHHHHHHHHHHHTTCCCHHHHHHCEEEEEEE
T ss_pred HHhhhhhCCCCccCHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHhhcCCccccccceEEEEEE
Confidence 9999999999999999999999999999874322111110000 1235679999999999999
Q ss_pred EecCCCCeeeeEeeeeeeeecccCc---cccHHHHHHhcCCCcccCCCCccccCcCCceeeEEEEEEeccccceeEEEEE
Q 004947 612 KCLRCSHESERYENIMDLTLEIYGW---VESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLK 688 (722)
Q Consensus 612 ~C~~C~~~S~~~e~f~~LsL~Ip~~---~~sLed~L~~~~~~E~ldg~nky~C~~C~~k~~a~K~~~I~~lP~vLiI~Lk 688 (722)
+|..|++++.++++|++|+|+||.. ..+|++||+.|+.+|.++|+|+|.|++|++++.+.|+..|.++|+||+|||+
T Consensus 167 ~C~~C~~~s~~~e~f~~LsL~i~~~~~~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vL~i~lk 246 (348)
T 3nhe_A 167 TCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLK 246 (348)
T ss_dssp EETTTCCEEEEEEEESSEEECCCSSCSSCEEHHHHHHHHHSCEEECGGGCCEETTTTEECCEEEEEEEEECCSEEEEEEC
T ss_pred EcCCCCCEeeeeccceEEeeeCCCcccCCCCHHHHHHHhcCceEecCCCceECCCCCCcccEEEEEEeecCCceEEEEEE
Confidence 9999999999999999999999963 3699999999999999999999999999999999999999999999999999
Q ss_pred eEEEcCeE--eEEeccccc
Q 004947 689 RFQVSCYL--LMRVRPLYV 705 (722)
Q Consensus 689 RF~~~~~~--k~k~~v~f~ 705 (722)
||.++.+. |+...|.||
T Consensus 247 Rf~~~~~~~~K~~~~v~fp 265 (348)
T 3nhe_A 247 RFSESRIRTSKLTTFVNFP 265 (348)
T ss_dssp CBCCCSSCCCBCCCCEECC
T ss_pred cccccCCceeecCcceecc
Confidence 99987643 444455665
No 5
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=100.00 E-value=3.3e-42 Score=370.85 Aligned_cols=230 Identities=32% Similarity=0.448 Sum_probs=190.7
Q ss_pred CCcCcccCCCcchHHHHHHHHhcCHHHHHHHHhcccCCcC--CCCcchHHHHHHHHHHHHHcCC--CCCChHHHHHHHHh
Q 004947 476 SPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSAC--CGKDWCLMCELEQHVMMLRESA--GPLSPGRILSHMRS 551 (722)
Q Consensus 476 ~p~GL~NlGNTCYmNSVLQ~L~sip~F~~~ll~~~~~~~~--~~~~~~l~~qL~kL~~~L~s~~--~~isP~~f~~~l~~ 551 (722)
|.+||.|+|||||||||||+|+++|+|+++++........ .....++.++|..|+..||... ..++|..|+..++.
T Consensus 2 G~~GL~N~GNtCY~NSvLQ~L~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~v~p~~~~~~l~~ 81 (355)
T 3i3t_A 2 GHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGALWHPDSCEAVNPTRFRAVFQK 81 (355)
T ss_dssp -CCCBCCCSSTHHHHHHHHHHHTCHHHHHHHHHTTHHHHC------CHHHHHHHHHHHHTSSCSSCCCBCCHHHHHHHHH
T ss_pred CCcCcEECCcchHHHHHHHHHhCCHHHHHHHHhchHHHhcCCCCchhHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Confidence 6799999999999999999999999999999875432211 2234689999999999998754 58999999999999
Q ss_pred ccccCCCCCcccHHHHHHHHHHHHHHHHHhhcCCCCCCC------------------c---------------ccccccc
Q 004947 552 ISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVD------------------P---------------RLQETTF 598 (722)
Q Consensus 552 ~~~~F~~~~QQDA~EFL~~LLd~L~~e~~~~l~~~~~~~------------------~---------------~~~~~s~ 598 (722)
..+.|.+++||||+|||.+||+.|++++........... + .....++
T Consensus 82 ~~~~f~~~~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 161 (355)
T 3i3t_A 82 YVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLEREDSK 161 (355)
T ss_dssp HCGGGCSSCCCBHHHHHHHHHHHHHHHHCCC----------------------------CCHHHHHHHHHHHHHHHCCSH
T ss_pred hChhhCCCCccCHHHHHHHHHHHHHHHHhhhccCCCcccccCcccCccccccccccCCCCCHHHHHHHHHHHhhhccCCc
Confidence 999999999999999999999999998743211100000 0 0113467
Q ss_pred cccccceEEEEEEEecCCCCeeeeEeeeeeeeecccCc-----cccHHHHHHhcCCCcccCCCCccccCcCCceeeEEEE
Q 004947 599 IQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGW-----VESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQ 673 (722)
Q Consensus 599 I~~lF~g~l~s~i~C~~C~~~S~~~e~f~~LsL~Ip~~-----~~sLed~L~~~~~~E~ldg~nky~C~~C~~k~~a~K~ 673 (722)
|.++|+|++.+.++|..|++++.+.++|++|+|+||.. ..+|++||+.|+++|.++|+|+|.|++|++++.+.|+
T Consensus 162 i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i~~~~~~~~~~sl~~~L~~~~~~e~l~~~n~~~C~~C~~~~~a~k~ 241 (355)
T 3i3t_A 162 IVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEELESENAPVCDRCRQKTRSTKK 241 (355)
T ss_dssp HHHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCCC-------CBHHHHHHHHHCCEEECGGGCCCCSSSCCCCCEEEE
T ss_pred ccccccEEEEeeEEeCCCCCCceeeccceeecccCCccccccCccCHHHHHHHhCCccccCCCCCeeCCCCCCccceEEE
Confidence 99999999999999999999999999999999999853 4699999999999999999999999999999999999
Q ss_pred EEeccccceeEEEEEeEEEcCeE--eEEeccccc
Q 004947 674 LSIHEAPNILTIVLKRFQVSCYL--LMRVRPLYV 705 (722)
Q Consensus 674 ~~I~~lP~vLiI~LkRF~~~~~~--k~k~~v~f~ 705 (722)
..|.++|+||+|||+||.++.+. |+...|.||
T Consensus 242 ~~i~~lP~vL~i~lkRF~~~~~~~~K~~~~v~fp 275 (355)
T 3i3t_A 242 LTVQRFPRILVLHLNRFSASRGSIKKSSVGVDFP 275 (355)
T ss_dssp EEEEECCSEEEEEECCEECCSSCCEECCCCCBCC
T ss_pred EEcccCChheEEEhhheecCCCCceECCcceeCC
Confidence 99999999999999999987654 444456665
No 6
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=100.00 E-value=9.9e-40 Score=354.74 Aligned_cols=220 Identities=22% Similarity=0.310 Sum_probs=188.7
Q ss_pred cCCcCcccCCCcchHHHHHHHHhcCHHHHHHHHhcccCCcCCCCcchHHHHHHHHHHHHHcCCCCCChHHHHHHHHhccc
Q 004947 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISC 554 (722)
Q Consensus 475 ~~p~GL~NlGNTCYmNSVLQ~L~sip~F~~~ll~~~~~~~~~~~~~~l~~qL~kL~~~L~s~~~~isP~~f~~~l~~~~~ 554 (722)
.+++||.|+|||||||||||+|+++|+|+++++..... ......++.++|++||..|+.+..++.|..|+..++ ++
T Consensus 4 ~g~~GL~NlGnTCYmNSvLQ~L~~~~~~r~~~~~~~~~--~~~~~~~~~~~l~~lf~~l~~~~~~~~~~~l~~~~~--~~ 79 (353)
T 1nb8_A 4 TGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTE--GDDSSKSVPLALQRVFYELQHSDKPVGTKKLTKSFG--WE 79 (353)
T ss_dssp SSCCCBCCCSTTTTHHHHHHHHHTCHHHHHHHHTSCCT--TSCTTTCHHHHHHHHHHHHHHCSSCBCCHHHHHHHT--CC
T ss_pred CCCCCcccCchhhHHHHHHHHHHCCHHHHHHHHhCCCC--CCcccccHHHHHHHHHHHHhhcCCCCCCHHHHhhcC--CC
Confidence 57899999999999999999999999999999764221 123456899999999999998888999999988775 36
Q ss_pred cCCCCCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccccceEEEEEEEecCCCCeeeeEeeeeeeeeccc
Q 004947 555 QIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIY 634 (722)
Q Consensus 555 ~F~~~~QQDA~EFL~~LLd~L~~e~~~~l~~~~~~~~~~~~~s~I~~lF~g~l~s~i~C~~C~~~S~~~e~f~~LsL~Ip 634 (722)
.|..+.||||+|||.+||+.|++++.. ....++|.++|+|+++++++|..|++.+.+.++|++|+|+||
T Consensus 80 ~~~~~~QqDA~EFl~~LLd~L~~~~~~-----------~~~~s~i~~~F~g~~~~~i~C~~C~~~s~~~e~f~~LsL~i~ 148 (353)
T 1nb8_A 80 TLDSFMQHDVQELCRVLLDNVENKMKG-----------TCVEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIK 148 (353)
T ss_dssp BTTTTTTSCHHHHHHHHHHHHHHHTTT-----------STTTTHHHHHHCEEEEEEEEESSSCCEEEEEEEESCEEECCT
T ss_pred CCCcccchhHHHHHHHHHHHHHHHhcC-----------CCccchhhhhceeEEEEEEEeccCCCeeceeeeeEEEEEEEC
Confidence 799999999999999999999986421 113467999999999999999999999999999999999999
Q ss_pred CccccHHHHHHhcCCCcccCCCCccccCcCCceeeEEEEEEeccccceeEEEEEeEEEcC----eEeEEecccccceecc
Q 004947 635 GWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQVSC----YLLMRVRPLYVTLLLL 710 (722)
Q Consensus 635 ~~~~sLed~L~~~~~~E~ldg~nky~C~~C~~k~~a~K~~~I~~lP~vLiI~LkRF~~~~----~~k~k~~v~f~~~l~~ 710 (722)
+ ..+|++||..|+.+|.++|+|+|.|+.|+ ++.|.|+..|.++|+||+|||+||.++. ..|+...|.||..|++
T Consensus 149 ~-~~~l~~~L~~~~~~E~l~~~~~~~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~K~~~~v~fp~~Ldl 226 (353)
T 1nb8_A 149 G-KKNIFESFVDYVAVEQLDGDNKYDAGEHG-LQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPL 226 (353)
T ss_dssp T-CSBHHHHHHHHTCCEEECTTTCEECGGGC-EECEEEEEEESCCCSEEEEEECCCC--------CCCCCCCBCCSEEEC
T ss_pred C-CcchHHHHHHhhCccccCCCccccCCcCc-cEeeEEEEEhhcCCCceEEEEecEEEecccCceEecCcEEECCCeeeh
Confidence 6 57999999999999999999999999997 6789999999999999999999999864 2355567788876665
Q ss_pred c
Q 004947 711 P 711 (722)
Q Consensus 711 P 711 (722)
.
T Consensus 227 ~ 227 (353)
T 1nb8_A 227 D 227 (353)
T ss_dssp G
T ss_pred h
Confidence 3
No 7
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=100.00 E-value=5.2e-40 Score=361.47 Aligned_cols=232 Identities=21% Similarity=0.218 Sum_probs=191.5
Q ss_pred cCCcCcccCCCcchHHHHHHHHhcCHHHHHHHHhcccCCcC---CCCcchHHHHHHHHHHHHHcCCCCCChHHHHHHHHh
Q 004947 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSAC---CGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRS 551 (722)
Q Consensus 475 ~~p~GL~NlGNTCYmNSVLQ~L~sip~F~~~ll~~~~~~~~---~~~~~~l~~qL~kL~~~L~s~~~~isP~~f~~~l~~ 551 (722)
..++||.|+|||||||||||||+++|+|+++|+........ ..+..+++++|+.||..|+.+...++|..|+..++.
T Consensus 12 ~~~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~v~P~~~~~~l~~ 91 (404)
T 2ayn_A 12 ELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKTSSSIPPIILLQFLHM 91 (404)
T ss_dssp CCCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCCC------CHHHHHHHHHHHHHHHHHHHCSEECCHHHHHHHHH
T ss_pred CCCCCcccCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCCCCcccHHHHHHHHHHHHHhcCCCcCChHHHHHHHHH
Confidence 46799999999999999999999999999999986543111 124578999999999999987789999999999999
Q ss_pred ccccCC------CCCcccHHHHHHHHHHHHHHHHHhhcCCCCC--------CCcccccccccccccceEEEEEEEecCCC
Q 004947 552 ISCQIG------DGSQEDAHEFLRLLVASMQSICLERHGGESK--------VDPRLQETTFIQHTFGGRLWSKVKCLRCS 617 (722)
Q Consensus 552 ~~~~F~------~~~QQDA~EFL~~LLd~L~~e~~~~l~~~~~--------~~~~~~~~s~I~~lF~g~l~s~i~C~~C~ 617 (722)
.++.|. .+.||||+|||.+||+.|++++......... ........++|.++|+|+++++++|..|+
T Consensus 92 ~~~~f~~~~~~~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~e~~~~~~~~~~~~~~~s~i~~~F~G~l~s~i~C~~C~ 171 (404)
T 2ayn_A 92 AFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSVKETDSSSASAATPSKKKSLIDQFFGVEFETTMKCTESE 171 (404)
T ss_dssp HCGGGGCBCTTSCBCCCCHHHHHHHHHHHHHTTSCCCCCC------------------CCHHHHHTCEEEEEEEEESSSC
T ss_pred hCchhhccccCCCccccCHHHHHHHHHHHHHHHhccccCCcccccchhhhhhhhccccCchhhhhccEEEEEEEEecCCC
Confidence 988887 4899999999999999999875321100000 00002345789999999999999999999
Q ss_pred Cee--eeEeeeeeeeecccCccccHHHHHHhcCCCcccCCCCccccCcCCceeeEEEEEEeccccceeEEEEEeEEEcCe
Q 004947 618 HES--ERYENIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQVSCY 695 (722)
Q Consensus 618 ~~S--~~~e~f~~LsL~Ip~~~~sLed~L~~~~~~E~ldg~nky~C~~C~~k~~a~K~~~I~~lP~vLiI~LkRF~~~~~ 695 (722)
+++ .++|+|++|+|+|+....+|++||+.|+. |.++ |+|+.|++.+.+.|+..|.++|+||+|||+||.++.+
T Consensus 172 ~~s~s~~~e~f~~Lsl~i~~~~~~l~~~L~~~~~-e~l~----~~c~~c~~~~~~~k~~~i~~lP~vL~i~LkRF~~~~~ 246 (404)
T 2ayn_A 172 EEEVTKGKENQLQLSCFINQEVKYLFTGLKLRLQ-EEIT----KQSPTLQRNALYIKSSKISRLPAYLTIQMVRFFYKEK 246 (404)
T ss_dssp CCCCBCCEEEESSEEEECSSSCCBHHHHHHHTTE-ECCC----CEETTTTEECCEEEEEEEEECCSSEEEEEECBCCCCS
T ss_pred CccCceeeccCceEEeecCCCcccHHHHHHHhcc-ccee----ecchhhCCccceeeeeeHhhCCCceEEEEEEEEEecc
Confidence 995 79999999999999866799999999996 5566 8999999999999999999999999999999998753
Q ss_pred ----EeEEecccccceeccc
Q 004947 696 ----LLMRVRPLYVTLLLLP 711 (722)
Q Consensus 696 ----~k~k~~v~f~~~l~~P 711 (722)
.|+...|.||..|++.
T Consensus 247 ~~~~~Ki~~~v~fP~~Ldl~ 266 (404)
T 2ayn_A 247 ESVNAKVLKDVKFPLMLDMY 266 (404)
T ss_dssp SSSCCBCCCCCBCCSEEECG
T ss_pred cCceeccCceeccCceeEHh
Confidence 4666678888877664
No 8
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=100.00 E-value=3.8e-39 Score=356.78 Aligned_cols=216 Identities=20% Similarity=0.208 Sum_probs=180.8
Q ss_pred cCCcCcccCCCcchHHHHHHHHhcCHHHHHHHHhcccCCcCCCC-------cchHHHHHHHHHHHHHcCC-CCCChHHHH
Q 004947 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGK-------DWCLMCELEQHVMMLRESA-GPLSPGRIL 546 (722)
Q Consensus 475 ~~p~GL~NlGNTCYmNSVLQ~L~sip~F~~~ll~~~~~~~~~~~-------~~~l~~qL~kL~~~L~s~~-~~isP~~f~ 546 (722)
.+++||.|+|||||||||||+|+++|+|+++|+.......+..+ ..+++++|++||..|+.+. .+++|..|+
T Consensus 22 ~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~v~p~~~~ 101 (415)
T 1vjv_A 22 QLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQNKSFKSVLPVVLL 101 (415)
T ss_dssp CCCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGGGCCSCTTSTTHHHHHHHHHHHHHHHHHHHCC-CCEECCHHHH
T ss_pred CCCCCCEeCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCcccccccchhHHHHHHHHHHHHHhcCCCCccCHHHHH
Confidence 56899999999999999999999999999999986544333222 4689999999999999876 789999999
Q ss_pred HHHHhccccCC-------CCCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccccceEEEEEEEecCCCCe
Q 004947 547 SHMRSISCQIG-------DGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHE 619 (722)
Q Consensus 547 ~~l~~~~~~F~-------~~~QQDA~EFL~~LLd~L~~e~~~~l~~~~~~~~~~~~~s~I~~lF~g~l~s~i~C~~C~~~ 619 (722)
..++...+.|. .+.||||+|||.+||+.|++++.. ++|.++|+ +++++++|..|+++
T Consensus 102 ~~l~~~~~~f~~~~~~~~~~~QqDa~Efl~~lLd~L~~~~~~---------------~~i~~~F~-~~~~~~~C~~C~~~ 165 (415)
T 1vjv_A 102 NTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGD---------------KFSEDFRI-QFKTTIKDTANDND 165 (415)
T ss_dssp HHHHHHCGGGGCBC----CBCCCCHHHHHHHHHHHHHHHHTH---------------HHHTTTCE-EEEEEEEETTEEEE
T ss_pred HHHHHhCchhhccccCCCCccccCHHHHHHHHHHHHHHHhcc---------------chHHHHHH-hheEEEEECCCCCC
Confidence 99999999998 799999999999999999998622 57899999 99999999999999
Q ss_pred e--eeEeeeeeeeecccCccccHHHHHHhcCCCcccCCCCccccCcCCceeeEEEEEEeccccceeEEEEEeEEEcCe--
Q 004947 620 S--ERYENIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQVSCY-- 695 (722)
Q Consensus 620 S--~~~e~f~~LsL~Ip~~~~sLed~L~~~~~~E~ldg~nky~C~~C~~k~~a~K~~~I~~lP~vLiI~LkRF~~~~~-- 695 (722)
+ .+.|+|++|+|+|+....+|++||+.|+. |.++ |+|+.|++++.+.|+..|.++|+||+|||+||.++.+
T Consensus 166 s~s~~~e~f~~Lsl~i~~~~~~l~~~L~~~~~-e~i~----~~c~~c~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~ 240 (415)
T 1vjv_A 166 ITVKENESDSKLQCHISGTTNFMRNGLLEGLN-EKIE----KRSDLTGANSIYSVEKKISRLPKFLTVQYVRFFWKRSTN 240 (415)
T ss_dssp EEEECCCEESCEEECCCTTCCBHHHHHHHHHE-EC-------------CCCCEEEEEEEEECBSEEEEEECCEEEETTTT
T ss_pred ccccccccceeeeeccccccchHHHHHHHHhh-hhhh----hcccccCCcccEEEEEEcccCCCeeEEEEEEEEEeCCCC
Confidence 7 59999999999999866799999999997 4555 8999999999999999999999999999999999754
Q ss_pred --EeEEecccccceeccc
Q 004947 696 --LLMRVRPLYVTLLLLP 711 (722)
Q Consensus 696 --~k~k~~v~f~~~l~~P 711 (722)
.|+...|.||..|++.
T Consensus 241 ~~~Ki~~~V~FP~~Ldl~ 258 (415)
T 1vjv_A 241 KKSKILRKVVFPFQLDVA 258 (415)
T ss_dssp EEEECCCCCBCCSEEECG
T ss_pred cchhhcCccCCCcEeEhH
Confidence 4555577888766654
No 9
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=100.00 E-value=2.8e-38 Score=356.01 Aligned_cols=235 Identities=26% Similarity=0.433 Sum_probs=193.3
Q ss_pred cCCcCcccCCCcchHHHHHHHHhcCHHHHHHHHhcccCCcC--CCCcchHHHHHHHHHHHHHcCC----------CCCCh
Q 004947 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSAC--CGKDWCLMCELEQHVMMLRESA----------GPLSP 542 (722)
Q Consensus 475 ~~p~GL~NlGNTCYmNSVLQ~L~sip~F~~~ll~~~~~~~~--~~~~~~l~~qL~kL~~~L~s~~----------~~isP 542 (722)
.|.+||.|+|||||||||||+|+++|+|+++++...+...+ ..+..++.++|.+++..|+... ..+.|
T Consensus 139 ~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~ 218 (476)
T 3mhs_A 139 DGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYGALNTKQASSSSTSTNRQ 218 (476)
T ss_dssp TCCCCCCCSSSTHHHHHHHHHHHTCHHHHHHHHTTHHHHHCSSCCTTTCHHHHHHHHHHHHHSCCCC--------CCCSC
T ss_pred CCCCCCCcCCccHHHHHHHHHHhCCHHHHHHHHhcchhhhccCCCcccchHHHHHHHHHHHhhcccccccccccccccCc
Confidence 56799999999999999999999999999999875543332 2456889999999999998632 14566
Q ss_pred HHHHHHH---HhccccCCCCCcccHHHHHHHHHHHHHHHHHhhcCCCC--CCCcccccccccccccceEEEEEEEecCCC
Q 004947 543 GRILSHM---RSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGES--KVDPRLQETTFIQHTFGGRLWSKVKCLRCS 617 (722)
Q Consensus 543 ~~f~~~l---~~~~~~F~~~~QQDA~EFL~~LLd~L~~e~~~~l~~~~--~~~~~~~~~s~I~~lF~g~l~s~i~C~~C~ 617 (722)
..++..+ ++.++.|.+++||||+|||.+||+.|++++........ .........++|.++|+|+++++++|..|+
T Consensus 219 ~~~~~~l~~~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~G~l~~~~~C~~C~ 298 (476)
T 3mhs_A 219 TGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQSYVLDLPNAKEVSRANNKQCECIVHTVFEGSLESSIVCPGCQ 298 (476)
T ss_dssp HHHHHHHHHHHHHCGGGSSSSCEEHHHHHHHHHHHHHHHHHHHCCC-------CCCSCCSHHHHHSCEEEEEEEECTTTC
T ss_pred chHHHHHHHHHHhccccCCCCCcCHHHHHHHHHHHHHHHHhhcccccccccccccccCCCcceeecceEEEEEEEECCCC
Confidence 6655544 57889999999999999999999999998765432211 111223356789999999999999999999
Q ss_pred Ceee-eEeeeeeeeecccCccccHHHHHHhcCCCcccCCCCccccCcCCceeeEEEEEEeccccceeEEEEEeEEEcC-e
Q 004947 618 HESE-RYENIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQVSC-Y 695 (722)
Q Consensus 618 ~~S~-~~e~f~~LsL~Ip~~~~sLed~L~~~~~~E~ldg~nky~C~~C~~k~~a~K~~~I~~lP~vLiI~LkRF~~~~-~ 695 (722)
+++. ++++|++|+|+|+. ..+|++||+.|+.+|.++|.+ |+|++|+.++.+.|+..|.++|+||+|||+||.++. +
T Consensus 299 ~~s~~~~e~f~~LsL~i~~-~~sl~~~L~~~~~~E~l~~~~-~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~ 376 (476)
T 3mhs_A 299 NNSKTTIDPFLDLSLDIKD-KKKLYECLDSFHKKEQLKDFN-YHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLNG 376 (476)
T ss_dssp CCCEEEEEEESCEEECCTT-CCBHHHHHHHHHCCEECSSCC-CEETTTTEECCCEEEEEEEEBCSEEEEEECCEEECTTS
T ss_pred CeeCCcccchhhhccchhh-hhHHHHHHHHhcChhhccCCC-CcCCccCCcccEEEEEEcccCCcceEEEeeeccccCCC
Confidence 9975 59999999999996 589999999999999999754 999999999999999999999999999999999853 3
Q ss_pred --EeEEecccccceeccc
Q 004947 696 --LLMRVRPLYVTLLLLP 711 (722)
Q Consensus 696 --~k~k~~v~f~~~l~~P 711 (722)
.|+...|.||..|++.
T Consensus 377 ~~~K~~~~V~fP~~Ldl~ 394 (476)
T 3mhs_A 377 SNRKLDDFIEFPTYLNMK 394 (476)
T ss_dssp CEEECCCCCBCCSEEECG
T ss_pred CeEECCEEEcCCCeeech
Confidence 4555677888776653
No 10
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=100.00 E-value=1.5e-37 Score=354.37 Aligned_cols=220 Identities=22% Similarity=0.310 Sum_probs=189.4
Q ss_pred cCCcCcccCCCcchHHHHHHHHhcCHHHHHHHHhcccCCcCCCCcchHHHHHHHHHHHHHcCCCCCChHHHHHHHHhccc
Q 004947 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISC 554 (722)
Q Consensus 475 ~~p~GL~NlGNTCYmNSVLQ~L~sip~F~~~ll~~~~~~~~~~~~~~l~~qL~kL~~~L~s~~~~isP~~f~~~l~~~~~ 554 (722)
.+++||.|+||||||||+||+|+++|+|+++++.... .......++.++|++||..|+.+..++.|..|+..++ ++
T Consensus 173 ~g~~GL~NlGnTCYmNSvLQ~L~~~~~fr~~~~~~~~--~~~~~~~~~~~~l~~lf~~l~~~~~~~~~~~l~~~~~--~~ 248 (522)
T 2f1z_A 173 TGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPT--EGDDSSKSVPLALQRVFYELQHSDKPVGTKKLTKSFG--WE 248 (522)
T ss_dssp TSCCCBCCC--CTTHHHHHHHHHTCHHHHHHHHTCCC--CSSCTTTCHHHHHHHHHHHHHHCSSCBCCTTHHHHTC--CC
T ss_pred CCccceecCcccHHHHHHHHHHhccHHHHHHHhhccc--cCCcccchHHHHHHHHHHHHhcCCCccCcHHHHhhcC--Cc
Confidence 6789999999999999999999999999999976422 1123456799999999999998888999999887764 36
Q ss_pred cCCCCCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccccceEEEEEEEecCCCCeeeeEeeeeeeeeccc
Q 004947 555 QIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIY 634 (722)
Q Consensus 555 ~F~~~~QQDA~EFL~~LLd~L~~e~~~~l~~~~~~~~~~~~~s~I~~lF~g~l~s~i~C~~C~~~S~~~e~f~~LsL~Ip 634 (722)
.|..+.||||+|||.+||+.|++++.. ....++|.++|+|+++++++|..|++.+.+.|+|++|+|+|+
T Consensus 249 ~~~~~~QqDa~Efl~~LLd~L~~~l~~-----------~~~~s~i~~lF~G~~~s~i~C~~C~~~s~~~e~f~~LsL~i~ 317 (522)
T 2f1z_A 249 TLDSFMQHDVQELCRVLLDNVENKMKG-----------TCVEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIK 317 (522)
T ss_dssp TTTSSTTSCHHHHHHHHHHHHHHHHTT-----------STTTTHHHHHHCEEEEEEECCSSSCCCCCEEEEESCEEECCT
T ss_pred cCCCcccccHHHHHHHHHHHHHhhccC-----------CccccchhhheeEEEEEEEEcCCCCceeeeeeeeEEEEEEeC
Confidence 789999999999999999999987632 113467999999999999999999999999999999999999
Q ss_pred CccccHHHHHHhcCCCcccCCCCccccCcCCceeeEEEEEEeccccceeEEEEEeEEEcC----eEeEEecccccceecc
Q 004947 635 GWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQVSC----YLLMRVRPLYVTLLLL 710 (722)
Q Consensus 635 ~~~~sLed~L~~~~~~E~ldg~nky~C~~C~~k~~a~K~~~I~~lP~vLiI~LkRF~~~~----~~k~k~~v~f~~~l~~ 710 (722)
+ ..+|++||+.|+.+|.++|+|+|.|+.|+ ++.|.|+..|.++|+||+|||+||.++. ..|+...|.||..|++
T Consensus 318 ~-~~~l~~~L~~~~~~E~l~~~n~~~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fp~~Ldl 395 (522)
T 2f1z_A 318 G-KKNIFESFVDYVAVEQLDGDNKYDAGEHG-LQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPL 395 (522)
T ss_dssp T-CCBHHHHHHHHTCEEEECTTSCBCCGGGC-SBCEEEEEEESCCCSEEEEEECCEEECSSSSCEEECCCCCBCCSEEEC
T ss_pred C-cccchHHHHHhhceeecCCcceeecCcCC-ccceEEEEEeecCCceEEEEEEeEEEcccCCcceEcCcEEeCCCeecc
Confidence 7 57999999999999999999999999996 5789999999999999999999999964 3466667888877666
Q ss_pred c
Q 004947 711 P 711 (722)
Q Consensus 711 P 711 (722)
.
T Consensus 396 ~ 396 (522)
T 2f1z_A 396 D 396 (522)
T ss_dssp G
T ss_pred h
Confidence 3
No 11
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}
Probab=99.77 E-value=7e-20 Score=196.56 Aligned_cols=100 Identities=21% Similarity=0.232 Sum_probs=82.3
Q ss_pred CCcCcccCCCcchHHHHHHHHhcCHHHHHHHHhcccCCcCCCCcchHHHHH-HHHHHHHHcCCCCCChHHHHHHHHhccc
Q 004947 476 SPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCEL-EQHVMMLRESAGPLSPGRILSHMRSISC 554 (722)
Q Consensus 476 ~p~GL~NlGNTCYmNSVLQ~L~sip~F~~~ll~~~~~~~~~~~~~~l~~qL-~kL~~~L~s~~~~isP~~f~~~l~~~~~ 554 (722)
.|.||.|+||||||||+||+|+++|++...|+..............+..+| ..++..|.. .++.|..|+..|++..+
T Consensus 8 ~p~GLqNlgNTCYLNSTLq~Lfsipel~d~Ll~~~~~~~~~~~~~~l~~~L~r~i~~~Lrk--~~~~P~~~l~~LR~~~p 85 (374)
T 2vhf_A 8 KKKGIQGHYNSCYLDSTLFCLFAFSSVLDTVLLRPKEKNDVEYYSETQELLRTEIVNPLRI--YGYVCATKIMKLRKILE 85 (374)
T ss_dssp ESCEECCCSSCHHHHHHHHHHHSSBGGGHHHHHCCCCTTSCTTHHHHHHHHHHTTHHHHHH--TSEECHHHHHHHHHHHH
T ss_pred CCccccCCCcCcHHHHHHHHHHhchHHHHHHHhCCCCCCcchhHHHHHHHHHHHHHHHHhh--cCCCcHHHHHHHHHHhH
Confidence 478999999999999999999999999999988644332222334688889 889999986 88999999999999888
Q ss_pred cCCC-----CCcccHHHHHHHHHHHHHH
Q 004947 555 QIGD-----GSQEDAHEFLRLLVASMQS 577 (722)
Q Consensus 555 ~F~~-----~~QQDA~EFL~~LLd~L~~ 577 (722)
.|.. +.||||+|||..||..|..
T Consensus 86 Qfae~~G~~~~QQDaEE~~t~Ll~~L~~ 113 (374)
T 2vhf_A 86 KVEAASGFTSEEKDPEEFLNILFHHILR 113 (374)
T ss_dssp HHC--------CCCHHHHHHHHHTTTTC
T ss_pred HHhcccCCCccccCHHHHHHHHHHHHhh
Confidence 7753 7899999999999998853
No 12
>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A
Probab=99.09 E-value=6.5e-11 Score=98.76 Aligned_cols=49 Identities=37% Similarity=0.823 Sum_probs=43.8
Q ss_pred CCCccccCcccccccccCCCCcceEcchhhhhhhchHhhHHhchhhhhcc
Q 004947 98 NGFQLCARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQQLEKTS 147 (722)
Q Consensus 98 ~~~~~C~~C~~~~~~~Cs~Ck~~~YCs~~CQ~~~W~~~Hk~~C~~~~~~~ 147 (722)
...+.|..|++.++++|++|+.++||+++||++||+ .||.+|..++...
T Consensus 13 ~~~~~C~~C~~~~~~~Cs~Ck~v~YCs~eCQ~~~W~-~HK~~C~~~~~~~ 61 (70)
T 2d8q_A 13 PERPRCAYCSAEASKRCSRCQNEWYCCRECQVKHWE-KHGKTCVLAAQGD 61 (70)
T ss_dssp CCCCBCSSSCCBCCCBCTTTSCCBCSCHHHHHHTHH-HHHHHCCCCCCCC
T ss_pred CCCCcCCCCCCcccccCCCCCCEeeCCHHHhHHHHH-HHHHHHHHHHHhh
Confidence 335799999999999999999999999999999999 7999999876543
No 13
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens}
Probab=99.03 E-value=7.8e-11 Score=96.59 Aligned_cols=45 Identities=33% Similarity=0.738 Sum_probs=41.9
Q ss_pred CCccccCcccccccccCCCCcceEcchhhhhhhchHhhHHhchhhh
Q 004947 99 GFQLCARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQQLE 144 (722)
Q Consensus 99 ~~~~C~~C~~~~~~~Cs~Ck~~~YCs~~CQ~~~W~~~Hk~~C~~~~ 144 (722)
....|..|++.++++|++|+.++||+++||+.||+ .||.+|..++
T Consensus 16 ~~~~C~~C~~~~~~~Cs~C~~~~YCs~~CQ~~~W~-~Hk~~C~~~~ 60 (64)
T 2odd_A 16 SSESCWNCGRKASETCSGCNTARYCGSFCQHKDWE-KHHHICGQTL 60 (64)
T ss_dssp CSSSCTTTSSCCCEEETTTSCCEESSHHHHHHHHH-HHTTTTTSSC
T ss_pred CCCcCccccCCCcccCCCCCChhhCCHHHHHHHHH-HHhHHHhccc
Confidence 45799999999999999999999999999999999 9999998654
No 14
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=99.02 E-value=1.3e-10 Score=94.10 Aligned_cols=45 Identities=31% Similarity=0.734 Sum_probs=41.8
Q ss_pred CCccccCcccccccccCCCCcceEcchhhhhhhchHhhHHhchhhh
Q 004947 99 GFQLCARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQQLE 144 (722)
Q Consensus 99 ~~~~C~~C~~~~~~~Cs~Ck~~~YCs~~CQ~~~W~~~Hk~~C~~~~ 144 (722)
....|..|++.++++|++|+.++||+++||++||+ .||.+|..++
T Consensus 14 ~~~~C~~C~~~~~~~Cs~C~~v~YCs~~CQ~~~W~-~Hk~~C~~~~ 58 (60)
T 2dj8_A 14 SSESCWNCGRKASETCSGCNTARYCGSFCQHKDWE-KHHHICSGPS 58 (60)
T ss_dssp CSCCCSSSCSCCCEECTTTSCCEESSHHHHHHTHH-HHTTTSCCSS
T ss_pred CCcccccCCCCCcccCCCCCCEeeeCHHHHHHHHH-HHHHHHHhcc
Confidence 45799999999999999999999999999999999 8999998764
No 15
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens}
Probab=98.98 E-value=1.4e-10 Score=93.92 Aligned_cols=46 Identities=33% Similarity=0.738 Sum_probs=42.0
Q ss_pred CCCccccCcccccccccCCCCcceEcchhhhhhhchHhhHHhchhhh
Q 004947 98 NGFQLCARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQQLE 144 (722)
Q Consensus 98 ~~~~~C~~C~~~~~~~Cs~Ck~~~YCs~~CQ~~~W~~~Hk~~C~~~~ 144 (722)
.....|..|++.++++|++|+.++||+++||+.||+ .||.+|..+.
T Consensus 11 ~~~~~C~~C~~~~~~~Cs~C~~v~YCs~~CQ~~dW~-~Hk~~C~~~~ 56 (60)
T 2od1_A 11 DSSESCWNCGRKASETCSGCNTARYCGSFCQHKDWE-KHHHICGQTL 56 (60)
T ss_dssp CCSSCCTTTSSCCCEECTTTSCCEESSHHHHHHHHH-HHTTTSSCSS
T ss_pred CCCCccccCCCcccccCCCCCCeeecCHHHHHHHHH-HHhHHHcccc
Confidence 345799999999999999999999999999999999 9999998654
No 16
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=98.90 E-value=4.3e-10 Score=88.17 Aligned_cols=43 Identities=37% Similarity=0.811 Sum_probs=38.6
Q ss_pred CCccccCcccccccccCCCCcceEcchhhhhhhchHhhHHhchh
Q 004947 99 GFQLCARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQQ 142 (722)
Q Consensus 99 ~~~~C~~C~~~~~~~Cs~Ck~~~YCs~~CQ~~~W~~~Hk~~C~~ 142 (722)
....|..|++.++++|++|+.++||+++||..||+ .||.+|..
T Consensus 8 ~~~~C~~C~~~~~~~C~~C~~~~YCs~~CQ~~~W~-~Hk~~C~~ 50 (52)
T 2jw6_A 8 KEQSCVNCGREAMSECTGCHKVNYCSTFCQRKDWK-DHQHICGQ 50 (52)
T ss_dssp ---CCSSSSSSCSEECTTTCSSEESSHHHHHHHTT-TGGGTTTC
T ss_pred cCCcCCCCCCCCcCcCCCCCCEeecCHHHHHHHHH-HHCHHHcc
Confidence 34699999999999999999999999999999999 89999984
No 17
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.37 E-value=1.4e-07 Score=104.95 Aligned_cols=56 Identities=34% Similarity=0.769 Sum_probs=47.5
Q ss_pred CCCCCCCCccccCccc--ccccccCCCCcceEcchhhhhhhchHhhHHhchhhhhccCC
Q 004947 93 ASTSKNGFQLCARCFA--PATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQQLEKTSSS 149 (722)
Q Consensus 93 ~~~~~~~~~~C~~C~~--~~~~~Cs~Ck~~~YCs~~CQ~~~W~~~Hk~~C~~~~~~~~~ 149 (722)
++........|.+|++ ..+.+|++|+.++|||++||+.||+ .||.+|..+....+.
T Consensus 40 ~~~~~~~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~-~Hk~eC~~~~~~~~~ 97 (429)
T 3qwp_A 40 TVCKGSRGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWP-DHKRECKCLKSCKPR 97 (429)
T ss_dssp EECGGGBTTBCTTTCCBCSSCEECTTTSCCEESSHHHHHHTHH-HHHHHHHHHHHTTTC
T ss_pred eeccccCCCcCcCCCCcCCCCCcCCCCCCcccCChhhhhhhhh-hhHHhhhhHHhcCcc
Confidence 3334456789999996 5778999999999999999999999 999999999876543
No 18
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.35 E-value=1.4e-07 Score=104.95 Aligned_cols=55 Identities=33% Similarity=0.716 Sum_probs=47.1
Q ss_pred CCCCCCCCccccCccc--ccccccCCCCcceEcchhhhhhhchHhhHHhchhhhhccC
Q 004947 93 ASTSKNGFQLCARCFA--PATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQQLEKTSS 148 (722)
Q Consensus 93 ~~~~~~~~~~C~~C~~--~~~~~Cs~Ck~~~YCs~~CQ~~~W~~~Hk~~C~~~~~~~~ 148 (722)
++........|.+|++ ..+.+|++|+.++|||++||++||+ .||.+|..++....
T Consensus 42 ~~~~~~~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~-~Hk~eC~~l~~~~~ 98 (433)
T 3qww_A 42 VLTVGERGHHCECCFARKEGLSKCGRCKQAFYCDVECQKEDWP-LHKLECSSMVVLGE 98 (433)
T ss_dssp EECGGGTTTBCTTTCCBCSSCEECTTTSCCEESSHHHHHHHHH-HHTTTHHHHHHSST
T ss_pred EecccccCCcCCcccccCCCCCCCCCCcceeecChhhhhhhhh-HHHHHHHHHHHhCc
Confidence 3334456789999997 4789999999999999999999998 99999999987653
No 19
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.19 E-value=5.7e-07 Score=101.61 Aligned_cols=53 Identities=32% Similarity=0.688 Sum_probs=46.0
Q ss_pred CCCCCCCccccCccc--ccccccCCCCcceEcchhhhhhhchHhhHHhchhhhhcc
Q 004947 94 STSKNGFQLCARCFA--PATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQQLEKTS 147 (722)
Q Consensus 94 ~~~~~~~~~C~~C~~--~~~~~Cs~Ck~~~YCs~~CQ~~~W~~~Hk~~C~~~~~~~ 147 (722)
+........|.+|++ ..+.+|++|+.++|||++||+.||+ .||.+|..++...
T Consensus 43 ~~~~~~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~-~Hk~eC~~~~~~~ 97 (490)
T 3n71_A 43 VFDSLINFVCHTCFKRQEKLHRCGQCKFAHYCDRTCQKDAWL-NHKNECAAIKKYG 97 (490)
T ss_dssp ECGGGTTTBCTTTCCBCSCCEECTTTSCCEESSHHHHHHHHH-HHHHHHHHHHHHT
T ss_pred ecccccCCcCCCCCCCCCCCCCCCCCCCcCcCCHHHhhhhhh-HHHHHhHHHHhcC
Confidence 334456789999986 4678999999999999999999999 9999999998764
No 20
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=97.81 E-value=3.4e-06 Score=78.35 Aligned_cols=52 Identities=17% Similarity=0.059 Sum_probs=44.1
Q ss_pred cCCCCcccccccCCccceeeccccchhhhcCCCCCchhhhhhccCCCCCCccccccccCchhhccccccccccc
Q 004947 368 AMNPMGTKNCKSAKSCTKVVGDQSCLEKERKGPIADESKAARVRDTIPAQGSNVVSKMGIMKMMGLRKSTKLRQ 441 (722)
Q Consensus 368 ~~~p~~~k~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~~~s~p~~~~~hL~~~GI~k~~~l~~~~Ktek 441 (722)
+.||++|||+++++.+++|+||.+.+.+. +| .+..||+||||+ +.+++||||
T Consensus 78 t~H~l~v~l~t~~~~~~~vwcY~cd~~V~-----------------dp-~L~~hl~~fgi~----~~~~~ktek 129 (129)
T 2g45_A 78 TGYPLAVKLGTITPDGADVYSYDEDDMVL-----------------DP-SLAEHLSHFGID----MLKMQKTDK 129 (129)
T ss_dssp HCCCEEEETTCCBTTBCCEEETTTTEEEE-----------------CT-THHHHHHTTTCC----TTTCCCC--
T ss_pred cCCCEEEECCCCCCCCCeEEECCCCCEeE-----------------Cc-cHHHHHHHHCCC----hhhhhccCC
Confidence 46999999999999999999988877443 33 689999999999 999999986
No 21
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.19 E-value=0.04 Score=43.47 Aligned_cols=40 Identities=38% Similarity=0.884 Sum_probs=31.9
Q ss_pred CCCCccccCcccccccccCCCCcceEcchhhhhhhchHhhHHhchh
Q 004947 97 KNGFQLCARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQQ 142 (722)
Q Consensus 97 ~~~~~~C~~C~~~~~~~Cs~Ck~~~YCs~~CQ~~~W~~~Hk~~C~~ 142 (722)
......|..|+..+.-+|.+|. ++|||..|. + .||..|..
T Consensus 9 ~~~~~~C~vC~~~~kY~CPrC~-~~yCSl~C~----k-~Hk~~C~~ 48 (56)
T 2yqq_A 9 KCSTVVCVICLEKPKYRCPACR-VPYCSVVCF----R-KHKEQCNP 48 (56)
T ss_dssp CCCCCCCTTTCSCCSEECTTTC-CEESSHHHH----H-HHHHHCCC
T ss_pred CCCCCccCcCcCCCeeeCCCCC-CCeeCHHHH----H-HHHhhCcC
Confidence 3344589999998888999999 689999995 4 67767865
No 22
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=86.18 E-value=0.37 Score=38.28 Aligned_cols=34 Identities=41% Similarity=0.928 Sum_probs=27.9
Q ss_pred ccccCccc----ccccccCCCCcceEcchhhhhhhchHhhHHhch
Q 004947 101 QLCARCFA----PATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQ 141 (722)
Q Consensus 101 ~~C~~C~~----~~~~~Cs~Ck~~~YCs~~CQ~~~W~~~Hk~~C~ 141 (722)
..|..|.. ++.-+|.+|. ++|||..|.+ .|| .|.
T Consensus 12 ~~C~vC~~~~~~~akY~CPrC~-~rYCSl~C~k-----~Hk-~Cs 49 (59)
T 1x4s_A 12 GPCGFCPAGEVQPARYTCPRCN-APYCSLRCYR-----THG-TCA 49 (59)
T ss_dssp EEECSSCTTCCEEECEECTTTC-CEESSHHHHH-----HHC-CGG
T ss_pred CcCcCCCCCcCCCccccCcCCC-CCccChHHHH-----HHh-HhC
Confidence 58999984 5778999999 6899999986 466 675
No 23
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}
Probab=76.96 E-value=5.7 Score=39.48 Aligned_cols=65 Identities=17% Similarity=0.209 Sum_probs=42.3
Q ss_pred cccCCCcchHHHHHHHHhcCHHHHHHHHhcccCCcCCCCcchHHHHHHHHHHHHHcCCCCCChHHHHHHHHhccccCCCC
Q 004947 480 LLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIGDG 559 (722)
Q Consensus 480 L~NlGNTCYmNSVLQ~L~sip~F~~~ll~~~~~~~~~~~~~~l~~qL~kL~~~L~s~~~~isP~~f~~~l~~~~~~F~~~ 559 (722)
|.=.-|.||+||++=.|-.+... ++.+...+.. =+|..|...+-.+. ....|
T Consensus 16 Lkq~dNNCwVNaa~l~LQ~~~~~-----------------------~~~aw~~f~~----Gd~~~fV~~~Ya~~-~~~~G 67 (211)
T 3mp2_A 16 LKQGDNNCWINACCYQLQAFDFF-----------------------NNEAWEKFKK----GDVMDFVNLCYAAT-TLARG 67 (211)
T ss_dssp ECCCTTCHHHHHHHHHHTTCTTC-----------------------CCHHHHHHTT----TCCHHHHHHHHHHH-TCCTT
T ss_pred EEccCCCcHHHHHHHHHHhcChh-----------------------HHHHHHHHhC----CChHHHHHHHHHHc-CCCCC
Confidence 34455999999998777544332 2333333332 26677776665432 45568
Q ss_pred CcccHHHHHHHHH
Q 004947 560 SQEDAHEFLRLLV 572 (722)
Q Consensus 560 ~QQDA~EFL~~LL 572 (722)
+--||+++|..|+
T Consensus 68 ~~gDa~~~L~~Ll 80 (211)
T 3mp2_A 68 HSGDAEYLLELML 80 (211)
T ss_dssp SCCCHHHHHHHHH
T ss_pred CCcCHHHHHHHHH
Confidence 8899999999998
No 24
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=75.63 E-value=0.24 Score=44.40 Aligned_cols=43 Identities=7% Similarity=-0.170 Sum_probs=32.0
Q ss_pred cCCCCcccccccCCccceeeccccchhhhcCCCCCchhhhhhccCCCCCCccccccccCch
Q 004947 368 AMNPMGTKNCKSAKSCTKVVGDQSCLEKERKGPIADESKAARVRDTIPAQGSNVVSKMGIM 428 (722)
Q Consensus 368 ~~~p~~~k~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~~~s~p~~~~~hL~~~GI~ 428 (722)
+.||+++++++. .|+||.+.+.+. +. ...+| ....||++|||+
T Consensus 62 t~H~~~~~l~~~-----~vwCy~cd~~V~------~~------~L~d~-~~~~hl~~fg~~ 104 (109)
T 3c5k_A 62 SGHPLVLSYIDL-----SAWCYYCQAYVH------HQ------ALLDV-KNIAHQNKFGED 104 (109)
T ss_dssp HCCCEEEETTTC-----CEEETTTTEEBC------CG------GGHHH-HHHHHHHHHCSC
T ss_pred cCCCEEEECCCC-----CEEECCCCCEEe------cc------cccCh-HHHHHHHHhCCC
Confidence 579999999998 488888888665 10 11112 568999999999
No 25
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A*
Probab=73.55 E-value=7.7 Score=40.86 Aligned_cols=71 Identities=18% Similarity=0.225 Sum_probs=45.0
Q ss_pred CcccCCCcchHHHHHHHHhcCHH-HHHHHHhcccCCcCCCCcchHHHHHHHHHHHHHcCCCCCChHHHHHHHHhccccCC
Q 004947 479 GLLNCGNSCYANAVLQCLTCTKP-LVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIG 557 (722)
Q Consensus 479 GL~NlGNTCYmNSVLQ~L~sip~-F~~~ll~~~~~~~~~~~~~~l~~qL~kL~~~L~s~~~~isP~~f~~~l~~~~~~F~ 557 (722)
=|.=--|.||+||++=.|-.+.. |+. -+|+.+...+..+ +|..|...+-... ...
T Consensus 104 vLkq~dNNCwVNaa~l~LQ~~~~~F~~-------------------~~l~~aw~~f~~G----d~~~FVa~~Ya~~-~~~ 159 (315)
T 2fe8_A 104 SIKWADNNCYLSSVLLALQQLEVKFNA-------------------PALQEAYYRARAG----DAANFCALILAYS-NKT 159 (315)
T ss_dssp CCCCCTTTHHHHHHHHHHHTSCCCBSS-------------------HHHHHHHHHHHHT----CCHHHHHHHHHHT-TCC
T ss_pred EEeecCCccHHHHHHHHHHhcCCccCC-------------------HHHHHHHHHHhCC----ChHHHHHHHHHhc-CCC
Confidence 34445599999999876644322 111 2444555555443 6677776665433 344
Q ss_pred CCCcccHHHHHHHHHH
Q 004947 558 DGSQEDAHEFLRLLVA 573 (722)
Q Consensus 558 ~~~QQDA~EFL~~LLd 573 (722)
.|+--||+++|..||+
T Consensus 160 ~G~~gDa~~~L~~Ll~ 175 (315)
T 2fe8_A 160 VGELGDVRETMTHLLQ 175 (315)
T ss_dssp TTSCCCHHHHHHHHHT
T ss_pred CCCCccHHHHHHHHHh
Confidence 6888999999999953
No 26
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=50.58 E-value=7.5 Score=36.12 Aligned_cols=31 Identities=19% Similarity=0.283 Sum_probs=23.3
Q ss_pred CcCcccCCCcchHHHHHHHHhcCH-HHHHHHH
Q 004947 477 PRGLLNCGNSCYANAVLQCLTCTK-PLVIYLL 507 (722)
Q Consensus 477 p~GL~NlGNTCYmNSVLQ~L~sip-~F~~~ll 507 (722)
..|+.|.-++|++|++||....+- +|-++.+
T Consensus 13 fys~pN~hdncWLNtilQLfryvdepfFd~~y 44 (167)
T 1qmy_A 13 FYSRPNNHDNAWLNAILQLFRYVEEPFFDWVY 44 (167)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCCTTHHHH
T ss_pred cccCCCCCcchHHHHHHHHHHHcCccchhhcc
Confidence 479999999999999999976543 2444443
No 27
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=49.07 E-value=16 Score=33.69 Aligned_cols=19 Identities=26% Similarity=0.293 Sum_probs=13.9
Q ss_pred EEEEEEEecCCCCeeeeEe
Q 004947 606 RLWSKVKCLRCSHESERYE 624 (722)
Q Consensus 606 ~l~s~i~C~~C~~~S~~~e 624 (722)
...-+..|..||+.....+
T Consensus 66 ~~p~~~~C~~CG~~~~~~~ 84 (139)
T 3a43_A 66 EEEAVFKCRNCNYEWKLKE 84 (139)
T ss_dssp EECCEEEETTTCCEEEGGG
T ss_pred ecCCcEECCCCCCEEeccc
Confidence 4556789999999865433
No 28
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=31.68 E-value=16 Score=29.75 Aligned_cols=32 Identities=22% Similarity=0.422 Sum_probs=21.6
Q ss_pred ccccCcccccccccCCCCcceEcchhhhhhhch
Q 004947 101 QLCARCFAPATTRCSRCKSVRYCSGKCQIIHWR 133 (722)
Q Consensus 101 ~~C~~C~~~~~~~Cs~Ck~~~YCs~~CQ~~~W~ 133 (722)
..|..|+++..-+ ..=..+.|||+.|+..|--
T Consensus 10 ~~CP~Cgkp~~W~-~~~~~rPFCSeRCr~iDLg 41 (68)
T 1lv3_A 10 VNCPTCGKTVVWG-EISPFRPFCSKRCQLIDLG 41 (68)
T ss_dssp EECTTTCCEEECS-SSSSCCSSSSHHHHHHHHS
T ss_pred CcCCCCCCccccc-ccCCCCcccCHHHHhhhHH
Confidence 5899999854311 0123567999999998743
No 29
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.53 E-value=52 Score=26.69 Aligned_cols=27 Identities=26% Similarity=0.675 Sum_probs=19.4
Q ss_pred CCCCccccCcccc-cc-----cccCCCCcceEcch
Q 004947 97 KNGFQLCARCFAP-AT-----TRCSRCKSVRYCSG 125 (722)
Q Consensus 97 ~~~~~~C~~C~~~-~~-----~~Cs~Ck~~~YCs~ 125 (722)
.....+|..|++. .+ ..| +|..+ ||+.
T Consensus 12 ~~~~~rC~~C~kk~gL~~~egf~C-rCg~~-FC~~ 44 (67)
T 1x4w_A 12 QKSRRRCFQCQTKLELVQQELGSC-RCGYV-FCML 44 (67)
T ss_dssp CSCTTBCSSSCCBCCHHHHHHHCC-SSSCC-CCTT
T ss_pred CccCCcchhhCCeecccccCceEe-cCCCE-ehhc
Confidence 3345799999973 44 489 99976 8865
No 30
>2l8e_A Polyhomeotic-like protein 1; DNA binding protein; NMR {Homo sapiens}
Probab=20.90 E-value=30 Score=26.33 Aligned_cols=31 Identities=26% Similarity=0.386 Sum_probs=20.4
Q ss_pred CCccccCcccccccccCCCCcceEcchhhhhh
Q 004947 99 GFQLCARCFAPATTRCSRCKSVRYCSGKCQII 130 (722)
Q Consensus 99 ~~~~C~~C~~~~~~~Cs~Ck~~~YCs~~CQ~~ 130 (722)
....|..||++.... .+=+.-+|||..|.+.
T Consensus 17 ~~~~C~~CG~~i~~~-~~~r~krFCS~sCR~~ 47 (49)
T 2l8e_A 17 NLLKCEYCGKYAPAE-QFRGSKRFCSMTCAKR 47 (49)
T ss_dssp SEEECTTTCCEEEGG-GCTTTSSSCSHHHHHH
T ss_pred CCCcChhccCccccc-cCCCCCccCCHHHHhh
Confidence 345799999853321 1234557999999865
No 31
>2k8j_X P7TM2; P7 polypeptide, HCV, ION chaneling, transmembrane, viral Pro; NMR {Synthetic}
Probab=20.18 E-value=24 Score=23.83 Aligned_cols=15 Identities=40% Similarity=0.842 Sum_probs=12.6
Q ss_pred hHhHHHHHHhhhhHH
Q 004947 18 VLPLVAYVLLGKWSE 32 (722)
Q Consensus 18 ~~p~~~~~~~~kw~~ 32 (722)
++|..+|.++|.|--
T Consensus 2 ~vP~~tY~~~g~Wpl 16 (29)
T 2k8j_X 2 LVPGAAYALYGVWPL 16 (29)
T ss_dssp CCSSHHHHHHHHHHH
T ss_pred CchHHHHHHHhHHHH
Confidence 468999999999964
Done!