Query 004949
Match_columns 722
No_of_seqs 120 out of 141
Neff 3.3
Searched_HMMs 13730
Date Mon Mar 25 10:45:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004949.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/004949hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ga8a_ c.68.1.4 (A:) Galactos 63.6 1.3 9.4E-05 41.0 1.9 108 537-678 84-197 (282)
2 d1lzia_ c.68.1.9 (A:) Glycosyl 37.7 4.7 0.00034 39.6 1.2 113 444-565 38-158 (283)
3 d1ll2a_ c.68.1.14 (A:) Glycoge 24.8 22 0.0016 32.0 3.4 42 537-584 84-125 (263)
4 d2axti1 f.23.37.1 (I:1-35) Pho 22.8 46 0.0033 23.4 3.9 21 71-91 11-31 (35)
5 d1o7qa_ c.68.1.9 (A:) alpha-1, 20.0 5.7 0.00042 39.0 -1.9 112 444-564 32-152 (287)
6 d1xmec1 f.23.9.1 (C:2-34) Bact 15.9 57 0.0042 22.4 3.0 17 63-79 5-21 (33)
7 d2h8pc1 f.14.1.1 (C:22-78) Pot 7.8 1.7E+02 0.012 21.9 3.7 26 62-87 7-32 (57)
8 d2drpa2 g.37.1.1 (A:140-165) T 7.5 42 0.0031 22.0 0.0 8 362-369 2-9 (26)
9 d1wg5a_ d.58.7.1 (A:) Heteroge 6.9 2.4E+02 0.018 21.6 4.5 54 430-500 17-71 (104)
10 d1jb0m_ f.23.19.1 (M:) Subunit 6.5 1.8E+02 0.013 19.6 2.8 19 65-83 7-25 (31)
No 1
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]}
Probab=63.62 E-value=1.3 Score=41.01 Aligned_cols=108 Identities=12% Similarity=0.081 Sum_probs=69.2
Q ss_pred ccccccccCCCCCCEEEEEeCceeEecCHHHHHHHHHhcCCCeEEEecCCCCCcHHHHHHHHHHhccCChHHHHHHHHHH
Q 004949 537 IPKLLPHRLFPSARYSIWLDSKLRLQRDPLLILEYFLWRKGYEYAISNHYDRHCVWEEVAQNKKLNKYNHTVIDQQFAFY 616 (722)
Q Consensus 537 ipKiLpHRLFPnyrYSIWIDgKIqL~~DPllLLE~fLwr~n~~fAIskHp~R~CVYEEAeackrl~K~~~~~Id~Qme~Y 616 (722)
+.+++.+.+||+++-.||||+=+.+..|+..|.+.-+ ++..+|+..+.... .+-...
T Consensus 84 y~Rl~l~~~lp~~~kiiyLD~D~iv~~dl~~L~~~~~--~~~~~aa~~d~~~~---------------------~~~~~~ 140 (282)
T d1ga8a_ 84 YARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDL--GDNWLGASIDLFVE---------------------RQEGYK 140 (282)
T ss_dssp GGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTCCC--TTCSEEEEECHHHH---------------------TSTTHH
T ss_pred HHHHHHhhhCCccceEEEecCCEEEecchHHHHhccc--ccceeeeehhhhhh---------------------hhhhhH
Confidence 4677888899999999999999999999988876432 55667777642111 111223
Q ss_pred HHcCCCCCCCCCCCCCCCCCCCCceEEEccCC-----cchhhhHHHHHHHH-hcCCCCCcchHHHHHH
Q 004949 617 QADGLKRFDPSDPDRLLPSNVPEGSFIVRAHT-----PMSNLFSCLWFNEV-DRFTSRDQLSFAYTYQ 678 (722)
Q Consensus 617 k~eGLp~~~~sdp~kl~pSdLpEgnVIVReHt-----p~sNlFmCLWFNEV-~rFS~RDQLSFaYVlw 678 (722)
...|+++. ...+-++|++-... .+...++ .|.++. ..+.--||=.|+.++.
T Consensus 141 ~~~~~~~~----------~~yfNsGVml~n~~~~r~~~~~~~~~-~~~~~~~~~~~~~DQd~LN~~f~ 197 (282)
T d1ga8a_ 141 QKIGMADG----------EYYFNAGVLLINLKKWRRHDIFKMSS-EWVEQYKDVMQYQDQDILNGLFK 197 (282)
T ss_dssp HHTTCCTT----------SCCEEEEEEEECHHHHTTSCHHHHHH-HHHHHHTTTCSSTHHHHHHHHHT
T ss_pred HHhCCCCC----------CceeecceeeechhhhhhhhHHHHHH-HHHHhcccCcccCchhHHHHHhc
Confidence 34455432 13577888776432 2233333 444554 3455589999998874
No 2
>d1lzia_ c.68.1.9 (A:) Glycosyltransferase A catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.67 E-value=4.7 Score=39.61 Aligned_cols=113 Identities=15% Similarity=0.210 Sum_probs=54.7
Q ss_pred CcCCHhhHhhhccC-cEEEEeeeeCCCccccCCCCCcccc--cCCCCceEEEEecccchhhhcccCCCCCCCCcccceE-
Q 004949 444 FDLAEDDANYNSRC-HIAVISCIFGNSDRLRIPVGKTVTR--LSRKNVCFVMFTDELTLQTLSSEGQIPDRTGFIGLWK- 519 (722)
Q Consensus 444 Fdi~e~D~~~M~~C-KIVVYTAIFGnYD~L~qP~~~~Is~--~s~knVcFicFTDe~tL~sl~~~g~vpd~~~~vG~WK- 519 (722)
|+.+=-+..|-.+. .|.|..--+|.|-...+.--.+++. +-.-++-|+.|||.... +|.-.- -..-+
T Consensus 38 ~~~~~l~~~~~~~~~tIgl~vfATGkY~~Fl~~f~eSaek~Fmpg~~v~yyvFTD~~~~--------vP~i~l-~~~~~v 108 (283)
T d1lzia_ 38 FNIDILNEQFRLQNTTIGLTVFAIKKYVAFLKLFLETAEKHFMVGHRVHYYVFTDQPAA--------VPRVTL-GTGRQL 108 (283)
T ss_dssp CCHHHHHHHHHTTTCEEEEEEEECGGGGGGHHHHHHHHHHHBSTTSEEEEEEEESCGGG--------SCCCCC-CTTEEE
T ss_pred CCHHHHHHHHhhCCceEEEEEEEeChHHHHHHHHHHHHHHhcCCCCeeEEEEEECCCcc--------CCcccc-ccCCce
Confidence 44444444555433 3666666678885543221100000 22356889999997542 221000 01223
Q ss_pred -EEEcc-CC--CCccccccccccccccccCCCCCCEEEEEeCceeEecCH
Q 004949 520 -MVVVK-NL--PYDDMRRVGKIPKLLPHRLFPSARYSIWLDSKLRLQRDP 565 (722)
Q Consensus 520 -IV~Vk-nl--Py~D~RRngRipKiLpHRLFPnyrYSIWIDgKIqL~~DP 565 (722)
++.|. .. |+..++|..-+-|...-+++-+++|-+++|+++.++...
T Consensus 109 ~v~~i~~~~~Wp~iTL~R~~~i~k~i~~~~~~e~DyLf~~DaDm~f~~~v 158 (283)
T d1lzia_ 109 SVLEVRAYKRWQDVSMRRMEMISDFCERRFLSEVDYLVCVDVDMEFRDHV 158 (283)
T ss_dssp EEEECC-------------------CHHHHHHHCSEEEEECSSEEECSCB
T ss_pred EEEeccCCCCCchHHHHHHHHHHHHHHHHhhhcCCEEEEeecceEEeccc
Confidence 34444 23 444556555454544557789999999999999998653
No 3
>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=24.83 E-value=22 Score=31.96 Aligned_cols=42 Identities=12% Similarity=0.102 Sum_probs=31.9
Q ss_pred ccccccccCCCCCCEEEEEeCceeEecCHHHHHHHHHhcCCCeEEEec
Q 004949 537 IPKLLPHRLFPSARYSIWLDSKLRLQRDPLLILEYFLWRKGYEYAISN 584 (722)
Q Consensus 537 ipKiLpHRLFPnyrYSIWIDgKIqL~~DPllLLE~fLwr~n~~fAIsk 584 (722)
+.|++.-. |++|+-.||||+-+.++.|+..|.+ .....|+..
T Consensus 84 y~Kl~i~~-l~~ydkvlYLDaD~lv~~~id~Lf~-----~~~~~a~~~ 125 (263)
T d1ll2a_ 84 LTKLHCWS-LTQYSKCVFMDADTLVLANIDDLFE-----REELSAAPD 125 (263)
T ss_dssp HHHGGGGG-CTTCSEEEEECTTEEECSCCGGGGG-----SCSSEEEEC
T ss_pred hHHHHHhh-hcccceEEEeCCCEEEecCHHHHhc-----CCccceecc
Confidence 56888877 5889999999999999999876654 344455543
No 4
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=22.83 E-value=46 Score=23.38 Aligned_cols=21 Identities=14% Similarity=0.467 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHhhcCCCCCC
Q 004949 71 LLVLLATVLAYLYISGYSNHN 91 (722)
Q Consensus 71 ~~~l~~~v~~~~~~s~~~~~~ 91 (722)
.+.+.|..|.+-++|.|+..|
T Consensus 11 vV~fFv~lFiFGFLSnDP~Rn 31 (35)
T d2axti1 11 VVTFFVLLFVFGFLSGDPARN 31 (35)
T ss_dssp HHHHHHHHHHHHHHTTCTTCS
T ss_pred HHHHHHHHHHHhhccCCCCCC
Confidence 344556778899999999644
No 5
>d1o7qa_ c.68.1.9 (A:) alpha-1,3-galactosyltransferase catalytic domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=20.03 E-value=5.7 Score=39.04 Aligned_cols=112 Identities=15% Similarity=0.231 Sum_probs=63.5
Q ss_pred CcCCHhhHhhhcc-CcEEEEeeeeCCC-c-cccCCCCCcccc--cCCCCceEEEEecccchhhhcccCCCCCCC-Ccccc
Q 004949 444 FDLAEDDANYNSR-CHIAVISCIFGNS-D-RLRIPVGKTVTR--LSRKNVCFVMFTDELTLQTLSSEGQIPDRT-GFIGL 517 (722)
Q Consensus 444 Fdi~e~D~~~M~~-CKIVVYTAIFGnY-D-~L~qP~~~~Is~--~s~knVcFicFTDe~tL~sl~~~g~vpd~~-~~vG~ 517 (722)
|+.+=-+..|-.+ -.|.|.+--+|.| + -|..=. .+++. +..-.|-|+.|||.... +|.-. +..-.
T Consensus 32 ~~~~~l~~~y~~~~~tIgl~vfAtgkY~~~Fl~~Fl-eSaEk~Fm~g~~v~yyVFTD~~~~--------~P~i~l~~~r~ 102 (287)
T d1o7qa_ 32 YNRAVLDNYYAKQKITVGLTVFAVGRYIEHYLEEFL-TSANKHFMVGHPVIFYIMVDDVSR--------MPLIELGPLRS 102 (287)
T ss_dssp BCHHHHHHHHHHHTCCEEEEEEECTTHHHHHHHHHH-HHHHHHBSTTSCEEEEEEESCGGG--------CCCCCCCTTEE
T ss_pred CCHHHHHHHHhhcCceEEEEEEEeChhHHHHHHHHH-HHHHHhcCCCCeEEEEEEECCccc--------CCccccCCccc
Confidence 5554455555553 3488888888998 5 232110 00000 22357999999998532 22100 00112
Q ss_pred eEEEEccC-C--CCccccccccccccccccCCCCCCEEEEEeCceeEecC
Q 004949 518 WKMVVVKN-L--PYDDMRRVGKIPKLLPHRLFPSARYSIWLDSKLRLQRD 564 (722)
Q Consensus 518 WKIV~Vkn-l--Py~D~RRngRipKiLpHRLFPnyrYSIWIDgKIqL~~D 564 (722)
=+++.|.. . |+..++|.--+-|...-+++.+++|-+++|+.+.++..
T Consensus 103 ~~v~~v~~~~~Wp~iTL~Rm~~i~~~i~~~~~~e~Dylf~~DaDm~f~~~ 152 (287)
T d1o7qa_ 103 FKVFKIKPEKRWQDISMMRMKTIGEHIVAHIQHEVDFLFCMDVDQVFQDK 152 (287)
T ss_dssp EEEEECCCCSSHHHHHHHHHHHHHHHHHHTHHHHCSEEEEECSSEEECSC
T ss_pred eEEEEccccCCCchhHHHHHHHHHHHHHHhhhccCCeEEEEeCCceEecc
Confidence 34455543 3 33455554444444456778899999999999999854
No 6
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=15.85 E-value=57 Score=22.35 Aligned_cols=17 Identities=29% Similarity=0.503 Sum_probs=7.8
Q ss_pred hhHHHHHHHHHHHHHHH
Q 004949 63 IGSVIFVLLLVLLATVL 79 (722)
Q Consensus 63 ~~~~~~~~~~~l~~~v~ 79 (722)
+||+-+|+.|.|+..||
T Consensus 5 ~gal~vi~il~l~ilvf 21 (33)
T d1xmec1 5 KGALAVILVLTLTILVF 21 (33)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHH
Confidence 45554444444443333
No 7
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=7.78 E-value=1.7e+02 Score=21.89 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=15.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhcCC
Q 004949 62 SIGSVIFVLLLVLLATVLAYLYISGY 87 (722)
Q Consensus 62 ~~~~~~~~~~~~l~~~v~~~~~~s~~ 87 (722)
.+|++++++++++++.-.+.+++-++
T Consensus 7 ~~~~~~~~~~i~i~~~s~~~y~~E~~ 32 (57)
T d2h8pc1 7 AAGAATVLLVIVLLAGSYLAVLAERG 32 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 35666666666666655555555443
No 8
>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}
Probab=7.46 E-value=42 Score=21.96 Aligned_cols=8 Identities=13% Similarity=0.239 Sum_probs=6.0
Q ss_pred cCcccccc
Q 004949 362 SSCEVKIL 369 (722)
Q Consensus 362 ~~C~i~~~ 369 (722)
.|||+||-
T Consensus 2 ypcp~cfk 9 (26)
T d2drpa2 2 YPCPFCFK 9 (26)
T ss_dssp EECTTTCC
T ss_pred cCCchhhH
Confidence 47888884
No 9
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.86 E-value=2.4e+02 Score=21.63 Aligned_cols=54 Identities=13% Similarity=0.166 Sum_probs=31.6
Q ss_pred cccccCCCCCCCCCCcCCHhhH-hhhccCcEEEEeeeeCCCccccCCCCCcccccCCCCceEEEEecccchh
Q 004949 430 CGFVKAPEGYPSTGFDLAEDDA-NYNSRCHIAVISCIFGNSDRLRIPVGKTVTRLSRKNVCFVMFTDELTLQ 500 (722)
Q Consensus 430 CGF~~gp~~~~~~GFdi~e~D~-~~M~~CKIVVYTAIFGnYD~L~qP~~~~Is~~s~knVcFicFTDe~tL~ 500 (722)
|=||++-+ |++.+.|+ .++..|.+++. +|. +..+.. + ..+.+|||.|.+....+
T Consensus 17 ~v~v~nLP------~~~te~dI~~~F~~~g~v~~-~v~-----~~~~~~-~----~~kG~afV~F~~~e~a~ 71 (104)
T d1wg5a_ 17 FVRLRGLP------FGCSKEEIVQFFSGLEIVPN-GMT-----LPVDFQ-G----RSTGEAFVQFASQEIAE 71 (104)
T ss_dssp EEEEESCC------TTCCHHHHHHHTTTCCEEEE-EEE-----CCBCSS-S----CBCSEEEEEESSHHHHH
T ss_pred EEEEeCCC------CCCCHHHHHHHHHhcCCceE-EEE-----EEeCCC-C----CcceEEEEEeCCHHHHH
Confidence 45777644 78888876 56667765443 221 111111 1 12679999999965543
No 10
>d1jb0m_ f.23.19.1 (M:) Subunit XII of photosystem I reaction centre, PsaM {Synechococcus elongatus [TaxId: 32046]}
Probab=6.51 E-value=1.8e+02 Score=19.65 Aligned_cols=19 Identities=37% Similarity=0.586 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 004949 65 SVIFVLLLVLLATVLAYLY 83 (722)
Q Consensus 65 ~~~~~~~~~l~~~v~~~~~ 83 (722)
-|++.|.+.|+-+++||+.
T Consensus 7 qv~valvial~pg~lafrl 25 (31)
T d1jb0m_ 7 QVYVALVIALLPAVLAFRL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556667778889999874
Done!