Query 004950
Match_columns 722
No_of_seqs 162 out of 386
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 15:35:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004950.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004950hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2021 Nuclear mRNA export fa 100.0 2E-120 5E-125 976.0 59.5 703 1-715 263-980 (980)
2 KOG2022 Nuclear transport rece 100.0 1.6E-44 3.5E-49 397.7 56.8 628 28-716 315-979 (982)
3 KOG2023 Nuclear transport rece 100.0 2.7E-40 5.8E-45 353.7 37.7 477 63-601 252-818 (885)
4 KOG2081 Nuclear transport regu 100.0 1.9E-28 4E-33 262.1 26.7 298 24-369 257-558 (559)
5 KOG2171 Karyopherin (importin) 99.9 5.9E-19 1.3E-23 202.7 41.0 547 62-671 242-843 (1075)
6 KOG1241 Karyopherin (importin) 99.8 1.2E-14 2.6E-19 160.1 42.7 490 67-605 259-816 (859)
7 COG5215 KAP95 Karyopherin (imp 99.5 1.5E-10 3.3E-15 124.1 37.4 435 74-577 270-730 (858)
8 COG5101 CRM1 Importin beta-rel 99.3 1.9E-07 4.1E-12 101.8 46.2 625 26-711 308-1028(1053)
9 KOG2171 Karyopherin (importin) 99.0 3.1E-06 6.7E-11 99.2 40.9 457 149-672 95-606 (1075)
10 KOG1991 Nuclear transport rece 98.7 4E-05 8.6E-10 88.6 33.9 466 85-601 318-849 (1010)
11 KOG1824 TATA-binding protein-i 98.7 2.7E-05 5.8E-10 89.1 29.8 267 282-600 453-722 (1233)
12 KOG2274 Predicted importin 9 [ 98.6 4.8E-05 1E-09 87.0 31.7 438 85-577 317-811 (1005)
13 PF08767 CRM1_C: CRM1 C termin 98.6 1.6E-06 3.5E-11 92.5 16.5 223 463-713 68-316 (319)
14 KOG1992 Nuclear export recepto 98.6 0.00032 6.9E-09 79.8 34.8 393 151-604 379-797 (960)
15 KOG1241 Karyopherin (importin) 98.3 0.011 2.3E-07 67.3 39.0 334 188-558 420-817 (859)
16 COG5215 KAP95 Karyopherin (imp 98.2 0.018 3.9E-07 63.5 36.1 283 187-504 420-723 (858)
17 KOG0915 Uncharacterized conser 98.2 0.0028 6.1E-08 76.7 32.0 184 105-314 989-1181(1702)
18 KOG2023 Nuclear transport rece 97.5 0.0096 2.1E-07 66.6 19.5 265 188-476 141-444 (885)
19 PF08506 Cse1: Cse1; InterPro 97.4 0.0022 4.8E-08 69.7 14.1 196 80-288 155-370 (370)
20 KOG1242 Protein containing ada 97.4 0.0053 1.1E-07 68.6 16.7 134 172-315 255-425 (569)
21 KOG1824 TATA-binding protein-i 96.9 1.4 2.9E-05 52.1 41.5 458 191-694 190-700 (1233)
22 PF03378 CAS_CSE1: CAS/CSE pro 96.8 0.11 2.3E-06 58.0 20.2 274 276-600 42-324 (435)
23 KOG1248 Uncharacterized conser 96.7 2.2 4.9E-05 51.6 32.0 214 424-693 698-921 (1176)
24 PF10508 Proteasom_PSMB: Prote 96.6 0.43 9.2E-06 54.6 23.8 354 188-622 51-441 (503)
25 KOG0212 Uncharacterized conser 96.6 1.8 3.8E-05 48.5 30.3 342 64-473 81-426 (675)
26 COG5656 SXM1 Importin, protein 96.4 2.7 5.9E-05 48.5 35.6 235 66-312 290-549 (970)
27 KOG0212 Uncharacterized conser 96.4 2.3 5.1E-05 47.5 27.6 282 260-599 86-405 (675)
28 PF01602 Adaptin_N: Adaptin N 96.2 3.2 7E-05 47.6 30.3 363 149-598 129-522 (526)
29 PF01602 Adaptin_N: Adaptin N 96.2 3.3 7.1E-05 47.5 30.8 134 158-314 66-201 (526)
30 KOG2020 Nuclear transport rece 96.0 5.8 0.00013 48.7 41.4 334 12-377 285-659 (1041)
31 PF12755 Vac14_Fab1_bd: Vacuol 96.0 0.017 3.6E-07 50.2 6.1 92 193-293 4-96 (97)
32 PF12755 Vac14_Fab1_bd: Vacuol 95.8 0.012 2.5E-07 51.2 4.4 56 257-314 22-77 (97)
33 KOG1991 Nuclear transport rece 95.4 8.7 0.00019 46.0 34.1 100 419-519 498-600 (1010)
34 KOG0915 Uncharacterized conser 94.9 13 0.00029 46.5 27.0 311 234-599 953-1305(1702)
35 PF12460 MMS19_C: RNAPII trans 94.9 7.8 0.00017 43.2 28.6 321 188-601 56-395 (415)
36 PF05804 KAP: Kinesin-associat 94.6 9.3 0.0002 45.2 24.5 222 187-455 384-608 (708)
37 KOG1059 Vesicle coat complex A 94.1 10 0.00022 43.8 22.2 235 168-455 105-366 (877)
38 KOG2274 Predicted importin 9 [ 94.0 17 0.00038 43.1 26.1 58 539-601 633-690 (1005)
39 KOG0213 Splicing factor 3b, su 93.5 19 0.0004 42.0 25.0 154 67-260 759-918 (1172)
40 PF12348 CLASP_N: CLASP N term 93.3 4 8.7E-05 41.1 16.5 188 234-460 19-212 (228)
41 PF02985 HEAT: HEAT repeat; I 93.0 0.059 1.3E-06 36.1 1.6 30 264-295 2-31 (31)
42 PF03378 CAS_CSE1: CAS/CSE pro 92.8 8.1 0.00018 43.2 19.0 253 296-602 17-274 (435)
43 PTZ00429 beta-adaptin; Provisi 92.6 28 0.00061 41.7 38.6 309 187-598 232-544 (746)
44 KOG1240 Protein kinase contain 92.6 2.3 5E-05 51.6 14.6 87 216-315 617-706 (1431)
45 PF05918 API5: Apoptosis inhib 92.4 13 0.00028 42.6 20.0 245 395-693 43-293 (556)
46 COG5656 SXM1 Importin, protein 92.3 12 0.00027 43.4 19.3 180 303-511 406-587 (970)
47 PF13513 HEAT_EZ: HEAT-like re 92.3 0.086 1.9E-06 40.3 2.0 54 236-291 1-55 (55)
48 cd00020 ARM Armadillo/beta-cat 91.2 0.59 1.3E-05 41.3 6.5 95 187-293 19-120 (120)
49 PTZ00429 beta-adaptin; Provisi 88.1 67 0.0015 38.6 38.2 61 231-298 114-174 (746)
50 PF12348 CLASP_N: CLASP N term 87.7 4.1 8.9E-05 41.1 10.3 143 186-348 18-163 (228)
51 KOG1993 Nuclear transport rece 87.7 67 0.0014 38.0 32.3 293 111-437 370-692 (978)
52 PF13513 HEAT_EZ: HEAT-like re 87.5 1 2.2E-05 34.2 4.4 54 189-248 1-54 (55)
53 PF12460 MMS19_C: RNAPII trans 86.2 61 0.0013 36.1 30.8 202 234-473 202-413 (415)
54 PF11864 DUF3384: Domain of un 85.1 31 0.00067 39.0 16.6 197 392-605 5-210 (464)
55 PF13646 HEAT_2: HEAT repeats; 84.9 5.6 0.00012 33.1 8.1 77 186-288 11-87 (88)
56 smart00802 UME Domain in UVSB 84.8 8.9 0.00019 33.9 9.4 86 424-509 12-101 (107)
57 PF12717 Cnd1: non-SMC mitotic 84.4 2.4 5.3E-05 41.2 6.4 55 235-294 1-55 (178)
58 KOG1240 Protein kinase contain 83.9 77 0.0017 39.3 19.1 229 192-455 440-686 (1431)
59 KOG1060 Vesicle coat complex A 83.7 1E+02 0.0022 36.5 31.3 153 108-293 136-316 (968)
60 PF14500 MMS19_N: Dos2-interac 83.5 60 0.0013 33.7 20.6 237 436-713 10-257 (262)
61 KOG1943 Beta-tubulin folding c 81.7 1.4E+02 0.003 36.7 23.9 116 191-310 444-591 (1133)
62 PF05918 API5: Apoptosis inhib 81.3 52 0.0011 37.8 16.0 60 235-299 35-94 (556)
63 KOG1242 Protein containing ada 80.8 1.1E+02 0.0024 35.1 29.5 158 417-605 289-449 (569)
64 PF12717 Cnd1: non-SMC mitotic 79.6 11 0.00024 36.5 9.1 76 231-312 34-112 (178)
65 KOG1248 Uncharacterized conser 79.2 1.7E+02 0.0038 36.3 34.5 247 234-513 666-920 (1176)
66 KOG1058 Vesicle coat complex C 78.0 1.5E+02 0.0033 35.0 22.0 157 150-348 104-272 (948)
67 PF02985 HEAT: HEAT repeat; I 77.5 5.6 0.00012 26.4 4.3 30 424-455 1-30 (31)
68 KOG2021 Nuclear mRNA export fa 76.8 31 0.00068 40.3 12.3 85 275-376 708-792 (980)
69 KOG1059 Vesicle coat complex A 76.4 1.5E+02 0.0032 34.9 17.4 47 66-124 335-381 (877)
70 PF08064 UME: UME (NUC010) dom 75.5 38 0.00081 29.9 10.3 54 420-473 49-103 (107)
71 COG5181 HSH155 U2 snRNP splice 71.5 2E+02 0.0044 33.3 23.1 156 68-261 565-724 (975)
72 PF08064 UME: UME (NUC010) dom 70.2 55 0.0012 28.8 10.1 73 437-509 27-101 (107)
73 PF08167 RIX1: rRNA processing 70.0 37 0.00081 32.5 9.8 82 422-504 66-155 (165)
74 KOG0213 Splicing factor 3b, su 69.7 2.4E+02 0.0052 33.4 31.5 136 159-310 707-849 (1172)
75 KOG3961 Uncharacterized conser 68.1 28 0.0006 34.5 8.2 121 421-548 112-238 (262)
76 KOG1058 Vesicle coat complex C 68.0 74 0.0016 37.4 12.7 152 65-254 315-466 (948)
77 PF10508 Proteasom_PSMB: Prote 67.5 2.3E+02 0.005 32.4 30.7 119 187-315 131-253 (503)
78 PF13646 HEAT_2: HEAT repeats; 65.7 8.4 0.00018 32.0 3.9 48 233-291 11-58 (88)
79 smart00802 UME Domain in UVSB 65.2 32 0.00069 30.4 7.5 92 260-368 9-104 (107)
80 COG5096 Vesicle coat complex, 65.1 85 0.0018 37.4 12.9 132 158-312 79-211 (757)
81 COG5181 HSH155 U2 snRNP splice 64.4 2.8E+02 0.006 32.2 27.0 263 256-599 598-869 (975)
82 PF01603 B56: Protein phosphat 62.0 2.6E+02 0.0056 31.1 19.4 221 60-293 102-370 (409)
83 KOG0166 Karyopherin (importin) 61.8 2.9E+02 0.0063 31.5 21.7 295 335-713 126-437 (514)
84 PF08167 RIX1: rRNA processing 61.4 1.5E+02 0.0033 28.2 12.9 131 171-313 24-163 (165)
85 PF10274 ParcG: Parkin co-regu 60.1 35 0.00076 33.2 7.3 87 421-509 36-129 (183)
86 KOG2160 Armadillo/beta-catenin 58.2 2.6E+02 0.0056 30.1 13.9 99 184-296 92-199 (342)
87 PF08506 Cse1: Cse1; InterPro 57.0 3E+02 0.0064 30.2 27.2 281 104-447 72-368 (370)
88 KOG1078 Vesicle coat complex C 56.2 73 0.0016 37.6 10.1 125 146-292 404-531 (865)
89 PF10274 ParcG: Parkin co-regu 55.4 64 0.0014 31.5 8.2 54 260-315 36-90 (183)
90 KOG0168 Putative ubiquitin fus 53.1 4.9E+02 0.011 31.5 26.5 132 174-315 213-345 (1051)
91 PF08767 CRM1_C: CRM1 C termin 50.9 3.4E+02 0.0073 29.0 21.0 125 417-548 111-247 (319)
92 PF04388 Hamartin: Hamartin pr 50.6 2.2E+02 0.0049 33.8 13.5 125 539-676 84-208 (668)
93 PRK09687 putative lyase; Provi 49.5 3.3E+02 0.0072 28.5 17.8 86 187-293 35-120 (280)
94 PLN03200 cellulose synthase-in 49.3 8.5E+02 0.018 33.1 30.3 95 188-294 459-560 (2102)
95 PRK09687 putative lyase; Provi 48.4 1.4E+02 0.003 31.4 10.2 84 187-291 103-186 (280)
96 PF08623 TIP120: TATA-binding 48.3 23 0.0005 34.0 4.0 77 237-317 42-118 (169)
97 PF14500 MMS19_N: Dos2-interac 48.2 3.4E+02 0.0073 28.2 19.5 145 187-347 11-155 (262)
98 KOG1861 Leucine permease trans 48.0 2.2E+02 0.0047 31.9 11.6 167 108-308 302-489 (540)
99 KOG1062 Vesicle coat complex A 47.5 5.7E+02 0.012 30.7 18.5 219 340-599 89-322 (866)
100 COG5218 YCG1 Chromosome conden 45.6 70 0.0015 36.6 7.6 60 236-297 61-124 (885)
101 PF08161 NUC173: NUC173 domain 45.4 3.2E+02 0.0068 27.1 11.8 141 393-545 19-181 (198)
102 KOG1293 Proteins containing ar 44.7 5.4E+02 0.012 30.1 14.4 144 432-599 384-532 (678)
103 KOG2956 CLIP-associating prote 43.4 2.6E+02 0.0057 31.3 11.3 179 242-469 313-493 (516)
104 KOG0211 Protein phosphatase 2A 43.2 1.6E+02 0.0036 35.3 10.7 73 235-310 570-643 (759)
105 COG5240 SEC21 Vesicle coat com 42.9 2.6E+02 0.0056 32.1 11.4 123 149-291 428-553 (898)
106 PF14868 DUF4487: Domain of un 42.7 6E+02 0.013 29.5 19.9 163 278-456 371-554 (559)
107 KOG0166 Karyopherin (importin) 42.5 5.7E+02 0.012 29.2 17.7 229 337-623 173-407 (514)
108 PF04118 Dopey_N: Dopey, N-ter 41.5 4.6E+02 0.01 27.9 13.2 37 440-476 112-148 (307)
109 PF10521 DUF2454: Protein of u 38.6 2.6E+02 0.0057 29.2 10.6 52 257-314 118-175 (282)
110 KOG1993 Nuclear transport rece 37.4 8.1E+02 0.018 29.5 25.9 219 280-552 503-734 (978)
111 KOG1222 Kinesin associated pro 36.9 3.6E+02 0.0078 30.3 11.1 134 287-453 483-620 (791)
112 KOG0414 Chromosome condensatio 36.4 6.1E+02 0.013 31.9 13.9 147 418-599 914-1063(1251)
113 KOG1410 Nuclear transport rece 33.3 8.8E+02 0.019 28.7 41.5 247 333-602 658-939 (1082)
114 PF12719 Cnd3: Nuclear condens 32.4 4E+02 0.0087 28.0 10.9 136 196-351 4-149 (298)
115 PF11865 DUF3385: Domain of un 32.1 1.8E+02 0.004 27.6 7.4 51 424-475 87-137 (160)
116 cd00020 ARM Armadillo/beta-cat 32.1 2.7E+02 0.0058 23.8 8.2 91 150-249 23-118 (120)
117 KOG3973 Uncharacterized conser 29.7 6.2E+02 0.013 27.1 11.0 73 109-199 138-210 (465)
118 KOG1943 Beta-tubulin folding c 29.5 1.2E+03 0.026 29.1 28.9 61 65-130 418-486 (1133)
119 PLN03076 ARF guanine nucleotid 28.5 1.6E+03 0.035 30.2 31.3 144 154-313 1072-1232(1780)
120 PF11707 Npa1: Ribosome 60S bi 26.6 7.2E+02 0.016 26.6 11.7 53 538-597 129-184 (330)
121 cd00197 VHS_ENTH_ANTH VHS, ENT 26.6 1.5E+02 0.0033 26.1 5.6 48 255-304 30-77 (115)
122 smart00638 LPD_N Lipoprotein N 25.8 1.1E+03 0.023 27.3 15.1 45 256-303 475-519 (574)
123 KOG2032 Uncharacterized conser 25.8 1E+03 0.022 27.0 12.8 96 216-315 254-352 (533)
124 PRK13800 putative oxidoreducta 25.4 2E+02 0.0043 35.6 8.0 48 232-289 848-895 (897)
125 KOG1967 DNA repair/transcripti 25.0 9.1E+02 0.02 29.6 12.5 190 253-478 807-1007(1030)
126 KOG2025 Chromosome condensatio 24.7 1.5E+02 0.0032 34.9 6.0 59 238-299 58-119 (892)
127 COG5657 CSE1 CAS/CSE protein i 24.6 1.4E+03 0.03 28.1 23.4 38 329-369 547-584 (947)
128 KOG1243 Protein kinase [Genera 23.6 9.6E+02 0.021 28.4 12.2 151 143-312 267-418 (690)
129 cd03561 VHS VHS domain family; 23.2 2.5E+02 0.0055 25.6 6.4 46 255-302 30-75 (133)
130 cd05133 RasGAP_IQGAP1 IQGAP1 i 23.2 1E+03 0.022 26.0 12.2 112 530-660 106-225 (360)
131 PF12074 DUF3554: Domain of un 22.8 9.4E+02 0.02 25.6 16.8 77 232-315 33-117 (339)
132 PF04826 Arm_2: Armadillo-like 22.8 8.5E+02 0.018 25.1 12.8 214 189-445 27-253 (254)
133 KOG2753 Uncharacterized conser 22.5 9.9E+02 0.021 25.7 13.3 76 257-346 102-177 (378)
134 KOG2956 CLIP-associating prote 22.1 1.2E+03 0.025 26.4 17.9 110 154-317 392-502 (516)
135 PF00514 Arm: Armadillo/beta-c 21.3 84 0.0018 21.9 2.2 20 274-293 22-41 (41)
136 cd03569 VHS_Hrs_Vps27p VHS dom 20.9 6.8E+02 0.015 23.2 9.1 80 189-276 59-140 (142)
137 PF13001 Ecm29: Proteasome sta 20.6 1.3E+03 0.028 26.4 23.0 132 216-357 272-415 (501)
138 PF09424 YqeY: Yqey-like prote 20.2 3E+02 0.0065 25.7 6.2 47 672-719 84-134 (143)
No 1
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.4e-120 Score=976.00 Aligned_cols=703 Identities=35% Similarity=0.518 Sum_probs=646.3
Q ss_pred CChhhHHHHHHhcCh-hhhhcc--ccccchhhHHHHHHHHHHHHHHHHHHHhhhcChhhH---HHHHHHHHHHHHHHHHh
Q 004950 1 MDPQSKLNLLQTLQI-SRVFGL--VSEDGESELVSKVAALLTGYAMEVLDCVKRLNAENA---NEASKKLLNEVLPSVFY 74 (722)
Q Consensus 1 M~p~~Kl~li~~L~l-~~~l~~--~~~~~D~e~~~~~a~L~~~~g~el~~~~~~~~~~~~---~~~~~~~l~~~~plvL~ 74 (722)
|||.+||.|+++|+. .+.... .++.+|.||.|+++||+|++|.|++.|.++.+++.. .+.++..+...+|++++
T Consensus 263 MkP~dKL~lln~L~q~l~lfg~~s~dq~~d~df~e~vskLitg~gvel~~i~s~lnseld~~~kqn~l~~ll~~vpyllq 342 (980)
T KOG2021|consen 263 MKPMDKLALLNMLNQTLELFGYHSADQMDDLDFWESVSKLITGFGVELTIIISQLNSELDTLYKQNVLSILLEIVPYLLQ 342 (980)
T ss_pred CChhHHHHHHHHHHHHHHHHhhhccccccCchHHHHHHHHHhhcceeeehhHhhhhhccCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999954 333332 234589999999999999999999999887754332 33666667779999999
Q ss_pred hhccCCccchhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHcccCcccccCCccCCC-CChhHHHHHHHHHHH
Q 004950 75 VMQNCEVDTTFSIVQFLSGYVATMKSLSPLKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDK-IGIEEEDRMVEYRKD 153 (722)
Q Consensus 75 ~~~~~d~~~~~~~~~F~~~~l~~lk~~~~l~~~~~~~l~~Ll~~li~km~yp~~~~~~~d~~~~-~~~ede~~F~e~Rk~ 153 (722)
++.|+++|++..+||||+.|+..+|+.++++++.+.++.+++.++++||.||+.+. |+|+ +|+|||+.|.|+||+
T Consensus 343 ~l~~e~ddit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~illai~kqicydemy~----nddn~tg~EeEa~f~e~Rkk 418 (980)
T KOG2021|consen 343 FLNNEFDDITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILLAIFKQICYDEMYF----NDDNVTGDEEEAFFEEVRKK 418 (980)
T ss_pred HhcccchhhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHHHHHHHHhccHHhh----cccCCCCchHHHHHHHHHHH
Confidence 99999999999999999999999999988999999999999999999999999984 3344 677899999999999
Q ss_pred HHHHHHHHHHcChhhHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhcccCchhhhhccc------ccHHhHHHHHHh
Q 004950 154 LLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGA------GHLSELVPMLLQ 227 (722)
Q Consensus 154 l~~ll~~i~~l~~~l~l~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~~gE~i~~~~~~~~~------~~l~~l~~~l~~ 227 (722)
++.++|.+.+++|++.+..|++.+.++++++++.+||++|+|||.+|.+||+.+++.....+ .++.+++.++++
T Consensus 419 Lk~fqdti~~idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~t 498 (980)
T KOG2021|consen 419 LKNFQDTIVVIDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMT 498 (980)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888899999999999999999999987654432 567789999999
Q ss_pred CCCCCCChhHHHHHHHHHHHhhHHHHhhcCCChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhhccchHHHHHHH
Q 004950 228 TKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENIL 307 (722)
Q Consensus 228 ~~i~~~~hp~V~~~~~e~i~RY~~~~~~~p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L~~~~~~il 307 (722)
+.++.++|+.|++.|+|+|+||.+||..+++++|.+|++|+|+||+||.+.+||+||||||+||+|.+|++|+||++.|+
T Consensus 499 sqv~~h~h~lVqLlfmE~ivRY~kff~~esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlvpfie~il 578 (980)
T KOG2021|consen 499 SQVLAHDHELVQLLFMELIVRYNKFFSTESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLVPFIEEIL 578 (980)
T ss_pred cccccCCchHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhcc-CCcccccCCCCchhhHHHHHHHHHHccCCCChhhhHHHHHHhHHHHHHHHHHHHHhhhccCCchhhh
Q 004950 308 QSLQDTIARFTS-MNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTA 386 (722)
Q Consensus 308 ~~l~~ll~~~~~-~~~~~~~~~~~~d~l~L~Eaig~Lis~~~~~~e~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~ 386 (722)
+.+||+|.++.. ++..+....+.|||+|+||+||.+|+..+.|+|++..|++.+++|++.+..-.+..+.-.++++.+.
T Consensus 579 n~iqdlL~~~vtt~N~~s~~lt~fddqlyIfEtiGviI~l~n~paE~qaay~~~litpl~~~~~igl~~a~lasde~~pv 658 (980)
T KOG2021|consen 579 NKIQDLLHIKVTTINAQSDNLTIFDDQLYIFETIGVIITLNNSPAELQAAYANTLITPLILDQIIGLLFAQLASDEASPV 658 (980)
T ss_pred HHHHHHHcCcCCCcCccccccccccccceeeecceEEEeCCCCCHHHHHHHHhcccChHHHHHHHHHHHHHHhccccccH
Confidence 999999964432 2223344567899999999999999999999999999999999999999987776665555666677
Q ss_pred HHHhHHHHHHHHHHhhhccCCCccCCCcchHHHHHHHHHHHHHHHHhcCCCChhHHhHHHHHHHHHHHhcCcccccchHH
Q 004950 387 KFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPK 466 (722)
Q Consensus 387 ~~~~~~~~i~~l~~lakgf~~~~~~~~~~~~~~~~~~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~lg~~v~p~lp~ 466 (722)
.++..+|+++|+|+++|||....++.++++|..+|.+++++++.++..|+..+.+|.++|+++||||.|+|+.++|++|+
T Consensus 659 ~Ia~c~~~lmaig~lakgf~~rlvt~~qvg~~~vf~~~ldvil~~ls~f~k~E~iRsavrft~hRmI~~lg~~vlPfipk 738 (980)
T KOG2021|consen 659 VIAECHHILMAIGTLAKGFHIRLVTENQVGNMVVFSNILDVILVTLSFFNKFENIRSAVRFTFHRMIPILGNKVLPFIPK 738 (980)
T ss_pred HHHHHHHHHHHHHHHhhcccccCcchhcccHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHhcchhhhcchHH
Confidence 78889999999999999999988888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 004950 467 ALEQLLAESEPKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTF 546 (722)
Q Consensus 467 li~~ll~~~~~~~~~~fL~~~~qli~~f~~~~~~~l~~ll~~l~~~v~~~l~~~~~~~~p~~~~d~~r~~~~l~r~y~~f 546 (722)
+++.|++.++.+|+.+|++|+||+||+||.+++++++++++|++.|+|+++...+ -+.+|+.+-++.+++|+|++|
T Consensus 739 lie~lL~s~d~kEmvdfl~flsQLihkfk~~~~~ilnqmlppll~rIfsvi~r~a----~p~dt~aa~ek~~lrksy~~f 814 (980)
T KOG2021|consen 739 LIELLLSSTDLKEMVDFLGFLSQLIHKFKTDCYQILNQMLPPLLNRIFSVIERIA----KPIDTAAAAEKILLRKSYCTF 814 (980)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC----CCCChhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999864 356788888999999999999
Q ss_pred HHHHHhcCCCeeecCCCCcCChHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhCCCCCCCCchhHHHHHHHhhhhh
Q 004950 547 LHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDWCARPFVEEKVPGFQSFMIEAFAMN 626 (722)
Q Consensus 547 l~~i~~~~~~~vl~s~~~~~~l~~~l~~l~~~~~~~~d~~~~k~a~~~l~~li~~~~~~~~~~~~~~gf~~fl~~~~~~~ 626 (722)
+++..++|.++|+.++.|..+++.++..+++++....||-.||++.....+++..|||. ++..||.+|.++..++-
T Consensus 815 Lqtftn~g~~silat~~n~~~~~~iln~l~~~a~~y~dpmmQksln~lcnk~v~lwggk----dg~~gf~dfvlk~~~ln 890 (980)
T KOG2021|consen 815 LQTFTNNGVTSILATDINRAILPVILNDLVTYAPQYIDPMMQKSLNVLCNKIVCLWGGK----DGDNGFKDFVLKIDGLN 890 (980)
T ss_pred HHHHhcCCcceeeeccchhhhhhHHHHHhhhccccccCHHHHHHHHHHHHHHHHhcCCc----CCccccccceeeccccc
Confidence 99999999999999999999999999999999999999999999999999999999886 45578999999998887
Q ss_pred hhhhcccCCCCCCCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCCCCCCHHHHHHHHHHhccCCchHHHH-HHH
Q 004950 627 CCLYSVLDKSFEFGDANTLVLFGEIVLAQKVMYEKFGNDFLVHFVTKGFPSAHCPPDLAEQYCQKLQGNDIKALKS-FYQ 705 (722)
Q Consensus 627 ~~~~~~~~~~F~~~Da~~~~~l~eia~~l~~l~~~~g~e~~~~l~~~~lP~~~~~~~~~~~f~~~l~~~~~k~~k~-~~~ 705 (722)
+|+..|+.+.||++|||+..+++|+|.++|+++.|.|++++.||.+.|||+.++|++.+++||++|++.|.|.||+ |++
T Consensus 891 ~Cf~~pl~~~Fn~~Dgnt~~~lgEla~llK~i~ek~gnecv~yL~q~ylPs~q~pqela~qycqaLq~~d~k~Fk~~f~~ 970 (980)
T KOG2021|consen 891 KCFPIPLEIPFNIKDGNTKTMLGELARLLKEIFEKSGNECVKYLTQIYLPSIQLPQELAIQYCQALQTMDQKQFKKWFVD 970 (980)
T ss_pred ceeeecccCCcccccchHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhcccccCCHHHHHHHHHHHhccchhHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHhhcc
Q 004950 706 SLIEKLRVQQ 715 (722)
Q Consensus 706 ~f~~~~r~~~ 715 (722)
.|+++.+.+|
T Consensus 971 ~fis~lkpg~ 980 (980)
T KOG2021|consen 971 NFISVLKPGQ 980 (980)
T ss_pred HHHHhcCCCC
Confidence 9999988654
No 2
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-44 Score=397.74 Aligned_cols=628 Identities=14% Similarity=0.165 Sum_probs=480.2
Q ss_pred hhHHHHHHHHHHHHHHHHHH-HhhhcChhhHHHHHHHHHHHHHHHHHhhh---ccC--CccchhhHHHHHHHHHHHhcc-
Q 004950 28 SELVSKVAALLTGYAMEVLD-CVKRLNAENANEASKKLLNEVLPSVFYVM---QNC--EVDTTFSIVQFLSGYVATMKS- 100 (722)
Q Consensus 28 ~e~~~~~a~L~~~~g~el~~-~~~~~~~~~~~~~~~~~l~~~~plvL~~~---~~~--d~~~~~~~~~F~~~~l~~lk~- 100 (722)
.|-..++-+++.+.|+..+. .++....+ .-.+....++..++.|+ |+- +..++..+..||+.+.+.+-.
T Consensus 315 ~e~i~~~~~i~v~~~En~l~~lid~~~~g----~~~e~v~rlv~vll~~t~~PG~ypveE~~S~~~l~FW~tL~dei~~~ 390 (982)
T KOG2022|consen 315 EEEIVTFLAITVSSVENHLPTLIDCAAQG----EQSELVIRLVQVLLVLTNFPGQYPVEEIVSDRTLIFWYTLQDEIMQT 390 (982)
T ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHhhc----chHHHHHHHHHHHHHHhCCCCCccHHHHHhHHHHHHHHHHHHHHHHh
Confidence 55556666777777765543 23321111 11223334444455554 332 555666999999998766521
Q ss_pred ----CCCChHHHH-HHHHHHHHHHHHHcccCcccccCCccCCCCChhHHHHHHHHHHHHHHHHHHHHHcChhhHHHHHHH
Q 004950 101 ----LSPLKEEQR-LHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRN 175 (722)
Q Consensus 101 ----~~~l~~~~~-~~l~~Ll~~li~km~yp~~~~~~~d~~~~~~~ede~~F~e~Rk~l~~ll~~i~~l~~~l~l~~i~~ 175 (722)
.+.-...++ +.|.+|+++.++|+.+|.+.. |. .|.+|+++.|+.||++++|++.+++.+-.+-.+++...
T Consensus 391 ~~e~~~~~~~i~~~qIy~qlvei~l~K~~~Ps~e~----~~-~W~S~s~e~F~~YR~diSD~~~~~Y~ilgd~ll~~L~~ 465 (982)
T KOG2022|consen 391 INETQQIKKQILSQQIYAQLVEILLKKLALPSKEI----WL-SWSSDSREQFESYRKDISDLLMSSYSILGDGLLDFLID 465 (982)
T ss_pred hhccCCcchhHHHHHHHHHHHHHHHHHhcCCCHHH----hc-cCCcchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 122334455 899999999999999998864 42 25578999999999999999999999766888999999
Q ss_pred HHHHHhcCC--CCCChhhHHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHH
Q 004950 176 SLANAVTFS--ADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFI 253 (722)
Q Consensus 176 ~l~~~l~~~--~~~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~ 253 (722)
.+.++++.+ .+.+|+..|+++|++.+++|....++ ...++.++.+..++.++.. +|...-|..++||.|+.|+
T Consensus 466 ~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~----~~~i~rl~~~~asik~S~~-n~ql~~Tss~~igs~s~~l 540 (982)
T KOG2022|consen 466 TLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETE----STWIPRLFETSASIKLSAP-NPQLLSTSSDLIGSLSNWL 540 (982)
T ss_pred HHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcch----hHHHHHHHHhccccccccC-ChhHHHHHHHHHHHHHHHH
Confidence 999998742 34569999999999999999988764 4678888888887666664 8899999999999999999
Q ss_pred hhcCCChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhhhhhhccCCcccccCCCCchh
Q 004950 254 QEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDG 333 (722)
Q Consensus 254 ~~~p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L~~~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~ 333 (722)
..||.||++.|+.++ +|+|++...+++-+. ++.||++|+.+|.||+++++...+.++... ..+..++
T Consensus 541 ~e~P~~ln~sl~~L~--~~Lh~sk~s~q~i~t--l~tlC~~C~~~L~py~d~~~a~~~e~l~~~---------~~~~S~~ 607 (982)
T KOG2022|consen 541 GEHPMYLNPSLPLLF--QGLHNSKESEQAIST--LKTLCETCPESLDPYADQFSAVCYEVLNKS---------NAKDSDR 607 (982)
T ss_pred hcCCcccCchHHHHH--HHhcCchHHHHHHHH--HHHHHHhhhhhCchHHHHHHHHHHHHhccc---------ccCchHH
Confidence 999999999999999 899988877776665 999999999999999999999999987422 1256789
Q ss_pred hHHHHHHHHHHccCCCChhhhHHHHHHhHHHHHHHHHHHHHhhhccCCchhhhHHHhHHHHHHHHHHhhhccCCCcc---
Q 004950 334 SHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLV--- 410 (722)
Q Consensus 334 l~L~Eaig~Lis~~~~~~e~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~lakgf~~~~~--- 410 (722)
+.++-+||++++.. -+|++.+|+..++.|++++++.++.... ++......+.+.+.+++.++..+.....
T Consensus 608 ~klm~sIGyvls~~--~pEe~~kyl~~lin~il~qle~~l~~~i-----~~~e~~l~~~~~l~~iS~LftSL~~~~~~~d 680 (982)
T KOG2022|consen 608 LKLMKSIGYVLSRL--KPEEIPKYLMKLINPILSQLEINLAPGI-----DDQENHLRIAFQLNTISALFTSLINKKDIID 680 (982)
T ss_pred HHHHHHHHHHHHhc--cHHhHHHHHHHHHHHHHHHHHHhhcCCC-----CCHHHHHHHHHHHHHHHHHHhccCCCCcccc
Confidence 99999999999985 4899999999999999999999975322 1234444577888888888766643210
Q ss_pred ---------CCCcchHHHHHHHHHHHHHHHHhcCCCChhHHhHHHHHHHHHHHhcCccc-ccchHHHHHHHHhcCChhhH
Q 004950 411 ---------TSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASV-FPYLPKALEQLLAESEPKEM 480 (722)
Q Consensus 411 ---------~~~~~~~~~~~~~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~lg~~v-~p~lp~li~~ll~~~~~~~~ 480 (722)
+..+.+++++..++++++..+++.|-+...|.|++|..+...+..+++.+ .|++|+++..++. +.+...
T Consensus 681 ~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r-~~~~~~ 759 (982)
T KOG2022|consen 681 TDQPEQREEPFQQFPILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVR-FLTSCL 759 (982)
T ss_pred ccchhhhccccccCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHH-hccchH
Confidence 11112678899999999999999999999999999999977799998877 8999999997666 544333
Q ss_pred HHHHHHHHHHHHHHhhh--HHHHHHhhhHHHHHHHHhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCee
Q 004950 481 AGFLVLLNQLICKFNTL--VHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSV 558 (722)
Q Consensus 481 ~~fL~~~~qli~~f~~~--~~~~l~~ll~~l~~~v~~~l~~~~~~~~p~~~~d~~r~~~~l~r~y~~fl~~i~~~~~~~v 558 (722)
.--+.+..++++.+..+ +.|.+.+.+...+++.+-+.++..+ .+++| +...++.|+..++...|. +
T Consensus 760 a~tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~~f----~n~~D-------i~~~~~~~v~~ilkk~P~-~ 827 (982)
T KOG2022|consen 760 AVTLSLIAACLLAKSTVEQCKPLVGQDMANAFQQSLLLFEQHPF----SNQPD-------IYLQLIGFVRQILKKIPK-F 827 (982)
T ss_pred HHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhccCC----CCCch-------HHHHHHHHHHHHHHhCcC-c
Confidence 44556666666655533 7777777777888999999998532 34445 889999999999999985 4
Q ss_pred ecCCCCcCChHHHHH--HHHHhhcCCCchHHHHHHHHHHHHHHHHhhCCCCCCCCchhHHHHHHHhhhhhhhhhcccCCC
Q 004950 559 FLSPKSRGYLDPIMQ--LLLYTSCNHKDYLVRKACVQIFIRLIKDWCARPFVEEKVPGFQSFMIEAFAMNCCLYSVLDKS 636 (722)
Q Consensus 559 l~s~~~~~~l~~~l~--~l~~~~~~~~d~~~~k~a~~~l~~li~~~~~~~~~~~~~~gf~~fl~~~~~~~~~~~~~~~~~ 636 (722)
+... .+.+..++. ++. ....+|+.+.|+|.+||+.++..-+.+ -....++++.+...++. ... +.
T Consensus 828 ~~~~--~~~~ts~i~~~a~~--ll~~pE~~~i~aa~qF~t~~~~~~~s~-----~~~tv~~~V~~~G~~Li-~~i-m~-- 894 (982)
T KOG2022|consen 828 LEPS--MLAFTSLILICAFI--LLNSPEPTTIRAASQFLTALATYATSH-----DLVTVTSVVAEIGPILI-YAI-MR-- 894 (982)
T ss_pred cccc--hHHHHHHHHHHHHH--hcCCCccHHHHHHHHHHHHHHhhcccc-----hhHHHHHHHHhcchHHH-HHH-HH--
Confidence 4432 234665444 333 578899999999999999988555442 24455666655433331 111 11
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHh----ccCCCCCCCHHHHHHHHHHhcc--CCchHHHHHHHHHHHH
Q 004950 637 FEFGDANTLVLFGEIVLAQKVMYEKFGNDFLVHFVT----KGFPSAHCPPDLAEQYCQKLQG--NDIKALKSFYQSLIEK 710 (722)
Q Consensus 637 F~~~Da~~~~~l~eia~~l~~l~~~~g~e~~~~l~~----~~lP~~~~~~~~~~~f~~~l~~--~~~k~~k~~~~~f~~~ 710 (722)
-+++-++|.-++-.|++|.++.+++..+.-.|+.. ..+|+.+++++.+.+|++.+.+ .++|.+|+....|.-.
T Consensus 895 -~vgg~~~RS~ld~~aDIL~al~~k~~se~r~wl~~~lq~~gfPs~~~s~e~k~rf~t~llrer~n~R~~k~~il~~~L~ 973 (982)
T KOG2022|consen 895 -GVGGEASRSTLDALADILLALNAKFFSETRTWLKAVLQIPGFPSAGVSNEIKSRFVTSLLRERGNKRNFKQQILEFNLA 973 (982)
T ss_pred -HhcCcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHHHhcHHHHHHHHHHHHHH
Confidence 12466778889999999999999999998888873 4999999999999999999965 6789999999999999
Q ss_pred HhhccC
Q 004950 711 LRVQQN 716 (722)
Q Consensus 711 ~r~~~~ 716 (722)
+||--|
T Consensus 974 ~~~l~~ 979 (982)
T KOG2022|consen 974 CTGLPN 979 (982)
T ss_pred hcCCCC
Confidence 998443
No 3
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-40 Score=353.69 Aligned_cols=477 Identities=20% Similarity=0.249 Sum_probs=385.3
Q ss_pred HHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHcccCcccc---c--------
Q 004950 63 KLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLSPLKEEQRLHAGQILEVILTQIRYDPMYR---N-------- 131 (722)
Q Consensus 63 ~~l~~~~plvL~~~~~~d~~~~~~~~~F~~~~l~~lk~~~~l~~~~~~~l~~Ll~~li~km~yp~~~~---~-------- 131 (722)
-||+.++.+||.-..+.|.+++..++|||.+|.+. +-......+|+.+|+.+++++|+|.+++. .
T Consensus 252 phl~~IveyML~~tqd~dE~VALEACEFwla~aeq----pi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~v 327 (885)
T KOG2023|consen 252 PHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQ----PICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESV 327 (885)
T ss_pred cchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcC----cCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccC
Confidence 37889999999999999899999999999999964 33556789999999999999999987653 0
Q ss_pred ------------------------CCccCCCCChhHHHHHHH--HHHHHHHHHHHHHHcChhhHHHHHHHHHHHHhcCCC
Q 004950 132 ------------------------NLDVLDKIGIEEEDRMVE--YRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSA 185 (722)
Q Consensus 132 ------------------------~~d~~~~~~~ede~~F~e--~Rk~l~~ll~~i~~l~~~l~l~~i~~~l~~~l~~~~ 185 (722)
++| .|+|++||++.|.+ +||+-+..++..+.+.++.++.++.+.++..+.+
T Consensus 328 pDreeDIkPRfhksk~~~~~~~~~~eD-dddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~-- 404 (885)
T KOG2023|consen 328 PDREEDIKPRFHKSKEHGNGEDADDED-DDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSS-- 404 (885)
T ss_pred CchhhhccchhhhchhccCcccccccc-ccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCc--
Confidence 011 11122345566777 8999999999999999999999999999998875
Q ss_pred CCChhhHHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhhcC--CChHHH
Q 004950 186 DRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHT--QYIPVV 263 (722)
Q Consensus 186 ~~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~~p--~~L~~v 263 (722)
..|-..||++++++++||++-.- -...+|++++.+++ ...+-.|.||..+|||++||++|+...+ +|+.++
T Consensus 405 -~~W~vrEagvLAlGAIAEGcM~g----~~p~LpeLip~l~~--~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pv 477 (885)
T KOG2023|consen 405 -EEWKVREAGVLALGAIAEGCMQG----FVPHLPELIPFLLS--LLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPV 477 (885)
T ss_pred -chhhhhhhhHHHHHHHHHHHhhh----cccchHHHHHHHHH--HhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHH
Confidence 78999999999999999998532 34789999999987 4555678999999999999999987643 899999
Q ss_pred HHHhccccCCCCCCchhHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhhhhhhccCCcccccCCCCchhhHHHHHHHHH
Q 004950 264 LAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLL 343 (722)
Q Consensus 264 L~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L~~~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~L~Eaig~L 343 (722)
|+.++ +.+-++|++|+.+||.+|..|.++....|+||++.||+.+--.+.. +..| ..+.||+|||++
T Consensus 478 L~~ll--~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~k-----YQ~K------NLlILYDAIgtl 544 (885)
T KOG2023|consen 478 LEGLL--RRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGK-----YQKK------NLLILYDAIGTL 544 (885)
T ss_pred HHHHH--HHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHH-----Hhhc------ceehHHHHHHHH
Confidence 99999 8999999999999999999999999999999999999999877752 2223 357999999999
Q ss_pred HccCCCChhhhHHHHHHhHHHHHHHHHHHHHhhhccCCchhhhHHHh-HHHHHHHHHHhhhccCCCccCCC---------
Q 004950 344 IGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFAN-IQQIIMAINALSKGFNERLVTSS--------- 413 (722)
Q Consensus 344 is~~~~~~e~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~i~~l~~lakgf~~~~~~~~--------- 413 (722)
+.+.+. .=++..|++.+++|++++++.+.. +++++.++.+ ++.+..|+| .||-++..++.
T Consensus 545 Adsvg~-~Ln~~~YiqiLmPPLi~KW~~lsd------~DKdLfPLLEClSsia~AL~---~gF~P~~~~Vy~Rc~~il~~ 614 (885)
T KOG2023|consen 545 ADSVGH-ALNKPAYIQILMPPLIEKWELLSD------SDKDLFPLLECLSSIASALG---VGFLPYAQPVYQRCFRILQK 614 (885)
T ss_pred HHHHHH-hcCcHHHHHHhccHHHHHHHhcCc------ccchHHHHHHHHHHHHHHHh---ccccccCHHHHHHHHHHHHH
Confidence 998753 335778999999999999987642 3345566555 444444444 56654432111
Q ss_pred ---------------cc-------------hH--------H--HHHHHHHHHHHHHHhcCCCChhHHhHHHHHHHHHHHh
Q 004950 414 ---------------RP-------------AI--------G--LMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDT 455 (722)
Q Consensus 414 ---------------~~-------------~~--------~--~~~~~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~ 455 (722)
+| +. . ....++.+++++|+. ...++||+++..+++.++..
T Consensus 615 t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~--D~~peVRQS~FALLGDltk~ 692 (885)
T KOG2023|consen 615 TLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQ--DEVPEVRQSAFALLGDLTKA 692 (885)
T ss_pred HHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhc--cCChHHHHHHHHHHHHHHHH
Confidence 01 11 1 123448888999887 78899999999999999999
Q ss_pred cCcccccchHHHHHHHHhcCCh---hhHHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHhhccCCCCCCCCCCCCHH
Q 004950 456 LGASVFPYLPKALEQLLAESEP---KEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEE 532 (722)
Q Consensus 456 lg~~v~p~lp~li~~ll~~~~~---~~~~~fL~~~~qli~~f~~~~~~~l~~ll~~l~~~v~~~l~~~~~~~~p~~~~d~ 532 (722)
+.+++.|++..++..|..+.+. +-....+|-+|.+..|++.++++ ...+++..++.+++... .|.+.-|+
T Consensus 693 c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~~~~----~v~~vl~~L~~iin~~~---~~~tllEN 765 (885)
T KOG2023|consen 693 CFEHVIPNLADFLPILGANLNPENISVCNNAIWAIGEIALKMGLKMKQ----YVSPVLEDLITIINRQN---TPKTLLEN 765 (885)
T ss_pred HHHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchhhhh----HHHHHHHHHHHHhcccC---chHHHHHh
Confidence 9999999999999988877654 33567789999999999998886 45567777788888643 33333333
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeeecCCCCcCChHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 004950 533 IREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKD 601 (722)
Q Consensus 533 ~r~~~~l~r~y~~fl~~i~~~~~~~vl~s~~~~~~l~~~l~~l~~~~~~~~d~~~~k~a~~~l~~li~~ 601 (722)
+.+|-|..+....+..+|+++.+.+.|+....+..|...|.+||..++++|..
T Consensus 766 ----------------tAITIGrLg~~~Pe~vAp~l~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~v 818 (885)
T KOG2023|consen 766 ----------------TAITIGRLGYICPEEVAPHLDSFMRPWCTSLRNIDDNEEKESAFRGLCNMINV 818 (885)
T ss_pred ----------------hhhhhhhhhccCHHhcchhHHHHHHHHHHHhcccccchhHHHHHHHHHHheee
Confidence 68888988999999999999999999998778999999999999999999944
No 4
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.9e-28 Score=262.11 Aligned_cols=298 Identities=16% Similarity=0.247 Sum_probs=247.2
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHH-hhhcChhhHHHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHhcc--
Q 004950 24 EDGESELVSKVAALLTGYAMEVLDC-VKRLNAENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKS-- 100 (722)
Q Consensus 24 ~~~D~e~~~~~a~L~~~~g~el~~~-~~~~~~~~~~~~~~~~l~~~~plvL~~~~~~d~~~~~~~~~F~~~~l~~lk~-- 100 (722)
..+|.|-.+.++|+++.+|+.+... .. ++++ . -..+.++|.+.+|.|.++++.+|+||+++.+.+-+
T Consensus 257 ~~~d~d~~~a~~RIFtel~eaf~~~i~~--np~~----~----l~~vellLl~~~h~~~evie~SF~fW~~lse~l~~~~ 326 (559)
T KOG2081|consen 257 AGEDLDKNEAICRIFTELGEAFVVLIST--NPEE----F----LRIVELLLLVAGHNDTEVIEASFNFWYSLSEELTLTD 326 (559)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHhh--CCCc----c----hhHHHHHHHhccCCchhhhhhhHHhhhhhHHHHhccc
Confidence 4679999999999999999999774 33 2310 0 13344557889999999999999999999888732
Q ss_pred CCCChHHHHHHHHHHHHHHHHHcccCcccccCCccCCCCChhHHHHHHHHHHHHHHHHHHHHH-cChhhHHHHHHHHHHH
Q 004950 101 LSPLKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVGR-VAPEVTQVFIRNSLAN 179 (722)
Q Consensus 101 ~~~l~~~~~~~l~~Ll~~li~km~yp~~~~~~~d~~~~~~~ede~~F~e~Rk~l~~ll~~i~~-l~~~l~l~~i~~~l~~ 179 (722)
.+.....+++|+.++++.+.+|++||+|.++ . -||+++|.+||..++|++++++. ||.+.++..++..+.+
T Consensus 327 ~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~---l-----~Ee~~~f~~fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e 398 (559)
T KOG2081|consen 327 DDEALGIFRPYFLRLVSLLKRHVQLPPDQFD---L-----PEEESEFFEFRLKVGDVLKDVAFIIGSDECLKQMYIRLKE 398 (559)
T ss_pred cHHHHHHhHHHHHHHHHHHHHHccCCCcccc---C-----ccchhHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHcc
Confidence 3345667999999999999999999995532 1 46789999999999999886555 7999998877777764
Q ss_pred HhcCCCCCChhhHHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhhcCCC
Q 004950 180 AVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQY 259 (722)
Q Consensus 180 ~l~~~~~~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~~p~~ 259 (722)
++.+|+.+||+||.|++++..+++++ ++.+|+++..+.+ .|.-.| +|+|.++++|+|++|+++||+.
T Consensus 399 -----~~~~We~~EAaLF~l~~~~~~~~~~e----~~i~pevl~~i~n--lp~Q~~--~~~ts~ll~g~~~ew~~~~p~~ 465 (559)
T KOG2081|consen 399 -----NNASWEEVEAALFILRAVAKNVSPEE----NTIMPEVLKLICN--LPEQAP--LRYTSILLLGEYSEWVEQHPEL 465 (559)
T ss_pred -----CCCchHHHHHHHHHHHHHhccCCccc----cchHHHHHHHHhC--Cccchh--HHHHHHHHHHHHHHHHHhCcHH
Confidence 45899999999999999999999874 6899999999996 565555 9999999999999999999999
Q ss_pred hHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhhhhhhccCCcccccCCCCchhhHHHHH
Q 004950 260 IPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEA 339 (722)
Q Consensus 260 L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L~~~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~L~Ea 339 (722)
+.+++++++ .|+.... ..++++.+|.++|..|+.++.++++.+++-+..+..... +.+... +..+
T Consensus 466 le~v~~~~~--~~~~~~~--~as~~a~~~~~i~~~c~~~~~~l~~~~~~l~~~l~~~~~----------~~e~a~-l~~~ 530 (559)
T KOG2081|consen 466 LEPVLRYIR--QGLQLKR--LASAAALAFHRICSACRVQMTCLIPSLLELIRSLDSTQI----------NEEAAC-LLQG 530 (559)
T ss_pred HHHHHHHHH--HHhhhcc--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhc----------cHHHHH-HHHH
Confidence 999999999 7877544 788999999999999999999999999888887765432 344555 9999
Q ss_pred HHHHHccCCCChhhhHHHHHHhHHHHHHHH
Q 004950 340 IGLLIGMEDVPPEKQSDYLSSLLTPLCQQV 369 (722)
Q Consensus 340 ig~Lis~~~~~~e~~~~~l~~ll~pl~~~l 369 (722)
+..+++. +|.++....++.++.|.++.+
T Consensus 531 ~s~i~~~--lp~~k~~~~~~el~~~~l~~l 558 (559)
T KOG2081|consen 531 ISLIISN--LPAHKAKIALEELCEPQLRNL 558 (559)
T ss_pred HHHHHhc--CCHhhhhHHHHHHhhHHHhcc
Confidence 9999997 588889999999999987654
No 5
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=5.9e-19 Score=202.73 Aligned_cols=547 Identities=16% Similarity=0.199 Sum_probs=330.0
Q ss_pred HHHHHHHHHHHHhhhccC--CccchhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHcccCcccccCCccCCCC
Q 004950 62 KKLLNEVLPSVFYVMQNC--EVDTTFSIVQFLSGYVATMKSLSPLKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKI 139 (722)
Q Consensus 62 ~~~l~~~~plvL~~~~~~--d~~~~~~~~~F~~~~l~~lk~~~~l~~~~~~~l~~Ll~~li~km~yp~~~~~~~d~~~~~ 139 (722)
..++.+++.+.|...++. |.++.+.+++|+..+.+. ++....+..++..+|+.+++.-|. |.+++ ++|...|
T Consensus 242 ~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~---Ap~~~k~~~~~~~~lv~~~l~~mt-e~~~D--~ew~~~d 315 (1075)
T KOG2171|consen 242 RPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEY---APAMCKKLALLGHTLVPVLLAMMT-EEEDD--DEWSNED 315 (1075)
T ss_pred HHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHh---hHHHhhhchhhhccHHHHHHHhcC-Ccccc--hhhcccc
Confidence 346778888888888886 778888999999999876 343444455677788888777664 22222 4786544
Q ss_pred ChhHHHHHHH-HHHHHHHHHHHHHHcChhhHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhcccCchhhhhcccccH
Q 004950 140 GIEEEDRMVE-YRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHL 218 (722)
Q Consensus 140 ~~ede~~F~e-~Rk~l~~ll~~i~~l~~~l~l~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l 218 (722)
+. |++++.. +|.-...+-+....++|+.++..+.+.+...+++ .+|.+..|+|.++..+|||+..-. ...+
T Consensus 316 ~~-ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S---~~w~~R~AaL~Als~i~EGc~~~m----~~~l 387 (1075)
T KOG2171|consen 316 DL-DEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQS---TEWKERHAALLALSVIAEGCSDVM----IGNL 387 (1075)
T ss_pred cc-ccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHcccHHHH----HHHH
Confidence 33 3333333 6666666666666789999999999999988876 789999999999999999998543 3579
Q ss_pred HhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHh-----hcCCChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHH
Q 004950 219 SELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQ-----EHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVK 293 (722)
Q Consensus 219 ~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~-----~~p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k 293 (722)
++++++++. ..++|||+||++++-.||-.+.=|. +|++.+|+.|-..++..+ +++|+.+|+.++-.|-.
T Consensus 388 ~~Il~~Vl~--~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~----~~rV~ahAa~al~nf~E 461 (1075)
T KOG2171|consen 388 PKILPIVLN--GLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQ----NVRVQAHAAAALVNFSE 461 (1075)
T ss_pred HHHHHHHHh--hcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccC----chHHHHHHHHHHHHHHH
Confidence 999999886 5788999999999999999987654 478889988888886544 67888888666666655
Q ss_pred H-hhccchHHHHHHHH-HhhhhhhhhccCCcccccCCCCchhhHHHHHHHHHHccCCCChhhhHHHHHHhHHHHHHHHHH
Q 004950 294 L-LKAKLVPFIENILQ-SLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQT 371 (722)
Q Consensus 294 ~-~r~~L~~~~~~il~-~l~~ll~~~~~~~~~~~~~~~~~d~l~L~Eaig~Lis~~~~~~e~~~~~l~~ll~pl~~~l~~ 371 (722)
. .+..+.||++.+++ .++-++... ++..|--+.-|||.+..+ ..++...|.+.+|+-+.+-+++
T Consensus 462 ~~~~~~l~pYLd~lm~~~l~~L~~~~-----------~~~v~e~vvtaIasvA~A---A~~~F~pY~d~~Mp~L~~~L~n 527 (1075)
T KOG2171|consen 462 ECDKSILEPYLDGLMEKKLLLLLQSS-----------KPYVQEQAVTAIASVADA---AQEKFIPYFDRLMPLLKNFLQN 527 (1075)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHhcCC-----------chhHHHHHHHHHHHHHHH---HhhhhHhHHHHHHHHHHHHHhC
Confidence 5 45677899999999 565554311 122233344445554444 4567789999988866655543
Q ss_pred HHHhhhccCCchhhhHHHhHHHHHHHHHHhhhccCCCccCCCcchHHHHHHHHHHHHHHHHhc-CCCChhHHhHHHHHHH
Q 004950 372 MLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVV-FPKVEPLRCKVTSFIH 450 (722)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~lakgf~~~~~~~~~~~~~~~~~~~~~vi~~~l~~-~~~~~~Vre~~~~~~~ 450 (722)
.- ++ +...+ -...+.|+|.++.+.... ...+.-.+++++....... ...+...|+....+|.
T Consensus 528 ~~-------~~-d~r~L--rgktmEcisli~~AVGke-------~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~wa 590 (1075)
T KOG2171|consen 528 AD-------DK-DLREL--RGKTMECLSLIARAVGKE-------KFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWA 590 (1075)
T ss_pred CC-------ch-hhHHH--HhhHHHHHHHHHHHhhhh-------hhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHH
Confidence 32 11 11111 245577787777554410 1122333344444433211 2345788888899999
Q ss_pred HHHHhcCcccccchHHHHHHHHhcCChh---------hHH--------HHHHHHHH--------HHHHHhhhH------H
Q 004950 451 RMVDTLGASVFPYLPKALEQLLAESEPK---------EMA--------GFLVLLNQ--------LICKFNTLV------H 499 (722)
Q Consensus 451 r~v~~lg~~v~p~lp~li~~ll~~~~~~---------~~~--------~fL~~~~q--------li~~f~~~~------~ 499 (722)
||.+++|+++.||+|.++.-++...+.. +.. ++..+-++ +...+-..+ .
T Consensus 591 rmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a 670 (1075)
T KOG2171|consen 591 RMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGEYA 670 (1075)
T ss_pred HHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHHHH
Confidence 9999999999999999999887653211 110 11111111 111111100 0
Q ss_pred HHHHhhhHHHHHHHHh-hccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeeecC-CCCcCChHHHHHHHHH
Q 004950 500 DILDEVFPAIAGRIFN-IIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLS-PKSRGYLDPIMQLLLY 577 (722)
Q Consensus 500 ~~l~~ll~~l~~~v~~-~l~~~~~~~~p~~~~d~~r~~~~l~r~y~~fl~~i~~~~~~~vl~s-~~~~~~l~~~l~~l~~ 577 (722)
-.+..-|.|=+..++. .+... .+--+-.+++++...+-..++.....+.-- ....+.+..+..++..
T Consensus 671 ~~lk~~F~pYve~v~~l~v~~l-----------~f~fhdgVR~aa~~~~p~ll~~~~~A~~~~p~~l~~l~~~~~~~l~~ 739 (1075)
T KOG2171|consen 671 KELKEAFAPYVEQVVELMVPLL-----------KFYFHDGVRKAAAESMPQLLTCALKACQGGPEYLKQLWEAIRPALIK 739 (1075)
T ss_pred HhhhhhhhhHHHHHHHHHHHHH-----------HhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence 0011111222222222 00000 111233378888887777665432211000 1112234455556665
Q ss_pred hhcCCCchHHHHHHHHHHHHHHHHhhCCCCCCCCch----hHHHHHHHhhhhhhhhhccc--CCCCCCCc-----hhHHH
Q 004950 578 TSCNHKDYLVRKACVQIFIRLIKDWCARPFVEEKVP----GFQSFMIEAFAMNCCLYSVL--DKSFEFGD-----ANTLV 646 (722)
Q Consensus 578 ~~~~~~d~~~~k~a~~~l~~li~~~~~~~~~~~~~~----gf~~fl~~~~~~~~~~~~~~--~~~F~~~D-----a~~~~ 646 (722)
...+.+|+.+.-.-++-|.+.++.+|...=..+.+. +....+.+++.. +|...-. ...+|... -+-..
T Consensus 740 ~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~-~~~r~~~~~eed~d~~eee~~~e~d~~ 818 (1075)
T KOG2171|consen 740 ALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGGLLAQLLQHFKR-MQDRQEEDDEEDDDIEEEEDLDEQDAY 818 (1075)
T ss_pred HhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHHHHHH-HHhhhhhhhhhhhhhHHHHHHhhhhHH
Confidence 566778888777777778888877764211001111 222223333222 1111111 11222111 12335
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHH
Q 004950 647 LFGEIVLAQKVMYEKFGNDFLVHFV 671 (722)
Q Consensus 647 ~l~eia~~l~~l~~~~g~e~~~~l~ 671 (722)
+++++.+++-.+.+..+..|.-|+.
T Consensus 819 ll~~i~~i~~~l~k~~k~~f~p~f~ 843 (1075)
T KOG2171|consen 819 LLDAISDILAALAKALKGSFLPFFE 843 (1075)
T ss_pred HHHHHHHHHHHHHHHccccccHHHH
Confidence 8889999999999999888765554
No 6
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=1.2e-14 Score=160.14 Aligned_cols=490 Identities=14% Similarity=0.168 Sum_probs=309.0
Q ss_pred HHHHHHHhhhccCCccchhhHHHHHHHHHHH-----------h-ccCCC-ChHHHHHHHHHHHHHHHHHc-ccCcccccC
Q 004950 67 EVLPSVFYVMQNCEVDTTFSIVQFLSGYVAT-----------M-KSLSP-LKEEQRLHAGQILEVILTQI-RYDPMYRNN 132 (722)
Q Consensus 67 ~~~plvL~~~~~~d~~~~~~~~~F~~~~l~~-----------l-k~~~~-l~~~~~~~l~~Ll~~li~km-~yp~~~~~~ 132 (722)
.++++-+..+-.++++++.+++|||++..+- . +..++ -..-.++-+.-+++++++.+ |-+|++++
T Consensus 259 alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~- 337 (859)
T KOG1241|consen 259 ALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDD- 337 (859)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCccc-
Confidence 4555556666777889999999999974322 1 11222 12224566778899999998 55666543
Q ss_pred CccCCCCChhHHHHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhcccCchhhhh
Q 004950 133 LDVLDKIGIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMR 212 (722)
Q Consensus 133 ~d~~~~~~~ede~~F~e~Rk~l~~ll~~i~~l~~~l~l~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~~gE~i~~~~~~ 212 (722)
+||. . -|--+.=+.-.+..-.+.+...+-+.+.+-+++ ++|+..|||.+.++++=|+-.++..+
T Consensus 338 DdWn----p---------~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~---pdwr~reaavmAFGSIl~gp~~~~Lt 401 (859)
T KOG1241|consen 338 DDWN----P---------AKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQN---PDWRNREAAVMAFGSILEGPEPDKLT 401 (859)
T ss_pred ccCc----H---------HHHHHHHHHHHHHHhcccchhhhHHHHHHhcCC---cchhhhhHHHHHHHhhhcCCchhhhh
Confidence 3553 1 233344455555554455566777777766655 89999999999999998885443211
Q ss_pred c-ccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhh---cCCChHHHHHHhccccCCCCCCchhHHHHHHHH
Q 004950 213 T-GAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQE---HTQYIPVVLAAFLDERGIHHPNVHVSRRASYLF 288 (722)
Q Consensus 213 ~-~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~---~p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf 288 (722)
. ....+|.++..+. ++.--|+-|+=|++||-+++... |.+++++.++.++ .|++ .+|+|.+.+|-+|
T Consensus 402 ~iV~qalp~ii~lm~------D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~--~gL~-DePrva~N~CWAf 472 (859)
T KOG1241|consen 402 PIVIQALPSIINLMS------DPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALL--EGLN-DEPRVASNVCWAF 472 (859)
T ss_pred HHHhhhhHHHHHHhc------CchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHH--HHhh-hCchHHHHHHHHH
Confidence 1 1233444444433 33345889999999999999864 7799999999999 8996 6788999999999
Q ss_pred HHHHHHhhccc---------hHHHHHHHHHhhhhhhhhccCCcccccCCCCchhhHHHHHHHHHHccCCCChhhhHHHHH
Q 004950 289 MRVVKLLKAKL---------VPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLS 359 (722)
Q Consensus 289 ~r~~k~~r~~L---------~~~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~L~Eaig~Lis~~~~~~e~~~~~l~ 359 (722)
..|++.|-... .|+.+.|+..+-. .++...++ .+.-+.-.|||.|-+|-. .++.-+..+.
T Consensus 473 ~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~----~tdr~dgn----qsNLR~AAYeALmElIk~---st~~vy~~v~ 541 (859)
T KOG1241|consen 473 ISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLK----VTDRADGN----QSNLRSAAYEALMELIKN---STDDVYPMVQ 541 (859)
T ss_pred HHHHHHHHHhccCCCCCCccchhHHHHHHHHHh----hccccccc----hhhHHHHHHHHHHHHHHc---CcHHHHHHHH
Confidence 99998877444 3455666555532 22111111 122366889999999997 5667788889
Q ss_pred HhHHHHHHHHHHHHHhhhccCCchhhhHHHhHHH-HHHHHHHhhhccCCCccCCCcchHHHHHHHHHHHHHHHHhcCCCC
Q 004950 360 SLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQ-IIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKV 438 (722)
Q Consensus 360 ~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~i~~l~~lakgf~~~~~~~~~~~~~~~~~~~~~vi~~~l~~~~~~ 438 (722)
.+..-++.+++++++.... +..+.....++.. +..+++.+-+-+++ ..-++-.+++..++++++. +++
T Consensus 542 ~~~l~il~kl~q~i~~~~l--~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~--------~~~~~~d~iM~lflri~~s-~~s 610 (859)
T KOG1241|consen 542 KLTLVILEKLDQTISSQIL--SLADRAQLNELQSLLCNTLQSIIRKVGS--------DIREVSDQIMGLFLRIFES-KRS 610 (859)
T ss_pred HHHHHHHHHHHHHHHHHhc--cHhhHHHHHHHHHHHHHHHHHHHHHccc--------cchhHHHHHHHHHHHHHcC-Ccc
Confidence 9999999999999983221 1112222222222 22334443333332 1335677899999999998 888
Q ss_pred hhHHhHHHHHHHHHHHhcCcccccchHHHHHHHHhcCC-hh---hHHHHHHHHHHHHHHHhhhHHHHHHhhhHHH-----
Q 004950 439 EPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESE-PK---EMAGFLVLLNQLICKFNTLVHDILDEVFPAI----- 509 (722)
Q Consensus 439 ~~Vre~~~~~~~r~v~~lg~~v~p~lp~li~~ll~~~~-~~---~~~~fL~~~~qli~~f~~~~~~~l~~ll~~l----- 509 (722)
..|.|-+.-...-++..+|+.+.-|+|.+.+-|....+ .. =....+.++|-+.+-.++++.|..+.+.+.|
T Consensus 611 ~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Ls 690 (859)
T KOG1241|consen 611 AVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLS 690 (859)
T ss_pred ccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999998876552 11 2233445666666655555544444333222
Q ss_pred ------------------------------HHHHHhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeee
Q 004950 510 ------------------------------AGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVF 559 (722)
Q Consensus 510 ------------------------------~~~v~~~l~~~~~~~~p~~~~d~~r~~~~l~r~y~~fl~~i~~~~~~~vl 559 (722)
++.+..+|++.+-...+.++.|..-=..+|+++.+...+.|+.. +..--
T Consensus 691 s~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qg-lk~~~ 769 (859)
T KOG1241|consen 691 SPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQG-LKTHA 769 (859)
T ss_pred CccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHH-hhccc
Confidence 22233334332100111233333334556777666666666541 11000
Q ss_pred cCCCCcCChHHHHHHHHHhhcCC-CchHHHHHHHHHHHHHHHHhhCC
Q 004950 560 LSPKSRGYLDPIMQLLLYTSCNH-KDYLVRKACVQIFIRLIKDWCAR 605 (722)
Q Consensus 560 ~s~~~~~~l~~~l~~l~~~~~~~-~d~~~~k~a~~~l~~li~~~~~~ 605 (722)
=+....|+++++++-+-+.+.+. -+-...++|+.++.++...+|++
T Consensus 770 ~~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~ 816 (859)
T KOG1241|consen 770 DVMLVQPYVPHIISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKG 816 (859)
T ss_pred chhhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccc
Confidence 12334577888877555444432 23467889999999999999864
No 7
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.51 E-value=1.5e-10 Score=124.14 Aligned_cols=435 Identities=16% Similarity=0.140 Sum_probs=267.9
Q ss_pred hhhccCCccchhhHHHHHHHHHHHh-------ccCCCChHH----HHHHHHHHHHHHHHHc-ccCcccccCCccCCCCCh
Q 004950 74 YVMQNCEVDTTFSIVQFLSGYVATM-------KSLSPLKEE----QRLHAGQILEVILTQI-RYDPMYRNNLDVLDKIGI 141 (722)
Q Consensus 74 ~~~~~~d~~~~~~~~~F~~~~l~~l-------k~~~~l~~~----~~~~l~~Ll~~li~km-~yp~~~~~~~d~~~~~~~ 141 (722)
+++.+..+.++.++.+||+...+.- |..+....+ .+.-...+++.+++-+ +-+||.++ +||.-.
T Consensus 270 ~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~-DdWn~s--- 345 (858)
T COG5215 270 RFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYG-DDWNPS--- 345 (858)
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccc-cccchh---
Confidence 5566666777779999998865432 222211111 1222334444444444 44555543 366421
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhcccCchhhhhcccccHHhH
Q 004950 142 EEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSEL 221 (722)
Q Consensus 142 ede~~F~e~Rk~l~~ll~~i~~l~~~l~l~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l 221 (722)
+.-+.-++-.+.+-.+.++.-+-..+.+.+++ .+|...|+|..+++++=++=...-. ....++.
T Consensus 346 ----------maA~sCLqlfaq~~gd~i~~pVl~FvEqni~~---~~w~nreaavmAfGSvm~gp~~~~l---T~~V~qa 409 (858)
T COG5215 346 ----------MAASSCLQLFAQLKGDKIMRPVLGFVEQNIRS---ESWANREAAVMAFGSVMHGPCEDCL---TKIVPQA 409 (858)
T ss_pred ----------hhHHHHHHHHHHHhhhHhHHHHHHHHHHhccC---chhhhHHHHHHHhhhhhcCccHHHH---HhhHHhh
Confidence 11112222222332333333344445554443 7899999999999998887332211 2344555
Q ss_pred HHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhh--cC-CChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhhcc
Q 004950 222 VPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQE--HT-QYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAK 298 (722)
Q Consensus 222 ~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~--~p-~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~ 298 (722)
++.+.. .-+++.--|.-++-|.+||.+++... +| .++++..++.+ -|+. .++++...+|..+..|+....+.
T Consensus 410 lp~i~n--~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~l--iGl~-D~p~~~~ncsw~~~nlv~h~a~a 484 (858)
T COG5215 410 LPGIEN--EMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASL--IGLM-DCPFRSINCSWRKENLVDHIAKA 484 (858)
T ss_pred hHHHHH--hcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHH--hhhh-ccchHHhhhHHHHHhHHHhhhhh
Confidence 555554 22344456888999999999999875 44 67999999998 7987 45667788888888888754433
Q ss_pred c-------hHHHHHHHHHhhhhhhhhccCCcccccCCCCchhhHHHHHHHHHHccCCCChhhhHHHHHHhHHHHHHHHHH
Q 004950 299 L-------VPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQT 371 (722)
Q Consensus 299 L-------~~~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~L~Eaig~Lis~~~~~~e~~~~~l~~ll~pl~~~l~~ 371 (722)
. .++.+.|+..+ ...++. ..+ ....+.-+|+|.|.+|-. .++.-.+.+-.+.+....++.+
T Consensus 485 ~~~~~S~l~~fY~ai~~~L----v~~t~~--~~N---e~n~R~s~fsaLgtli~~---~~d~V~~~~a~~~~~~~~kl~~ 552 (858)
T COG5215 485 VREVESFLAKFYLAILNAL----VKGTEL--ALN---ESNLRVSLFSALGTLILI---CPDAVSDILAGFYDYTSKKLDE 552 (858)
T ss_pred hccccchhHHHHHHHHHHH----HHHHHh--hcc---chhHHHHHHHHHHHHHhh---cchhHHHHHHHHHHHHHHHHHH
Confidence 2 33344444433 222211 011 234578999999999997 5567788888999999999999
Q ss_pred HHHhhhccCCchhhhHHHh-HHHHHHHHHHhhhccCCCccCCCcchHHHHHHHHHHHHHHHHhcCCCChhHHhHHHHHHH
Q 004950 372 MLLDAKMLNPEESTAKFAN-IQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIH 450 (722)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~-~~~~i~~l~~lakgf~~~~~~~~~~~~~~~~~~~~~vi~~~l~~~~~~~~Vre~~~~~~~ 450 (722)
+++-....-+.+|...+.+ .+.++..+..+-+.++. .+..+-.++++++.++++.- +...+-+-+.-...
T Consensus 553 ~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~--------~ie~v~D~lm~Lf~r~les~-~~t~~~~dV~~aIs 623 (858)
T COG5215 553 CISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRR--------DIEDVEDQLMELFIRILEST-KPTTAFGDVYTAIS 623 (858)
T ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCC--------CcccHHHHHHHHHHHHHhcc-CCchhhhHHHHHHH
Confidence 8875432123344344444 34456666655555542 23345567899999999974 56677888888899
Q ss_pred HHHHhcCcccccchHHHHHHHHhcC---ChhhHHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHhhccCCCCCCCCC
Q 004950 451 RMVDTLGASVFPYLPKALEQLLAES---EPKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPG 527 (722)
Q Consensus 451 r~v~~lg~~v~p~lp~li~~ll~~~---~~~~~~~fL~~~~qli~~f~~~~~~~l~~ll~~l~~~v~~~l~~~~~~~~p~ 527 (722)
-|..++|+.+--|+|++++.|.... +..-....+.|+|-+....+.++.+.-+ .+.+++.+.|+. |.
T Consensus 624 al~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y~d----~~ms~LvQ~lss------~~ 693 (858)
T COG5215 624 ALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIYAD----VLMSSLVQCLSS------EA 693 (858)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHH----HHHHHHHHHhcC------hh
Confidence 9999999999999999998777644 2234566778888888888877666333 355556666664 22
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhcCCCeeecCCCCcCChHHHHHHHHH
Q 004950 528 TNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLY 577 (722)
Q Consensus 528 ~~~d~~r~~~~l~r~y~~fl~~i~~~~~~~vl~s~~~~~~l~~~l~~l~~ 577 (722)
.+++++-+-+..+..|..+- .....++|+.++....+
T Consensus 694 -------~~R~lKPaiLSvFgDIAlai------ga~F~~YL~~im~L~qq 730 (858)
T COG5215 694 -------THRDLKPAILSVFGDIALAI------GANFESYLDMIMMLFQQ 730 (858)
T ss_pred -------hccccchHHHHHHHHHHHHH------hhhHHHHHHHHHHHHHH
Confidence 23447777777777665421 11233466665544333
No 8
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=99.34 E-value=1.9e-07 Score=101.80 Aligned_cols=625 Identities=15% Similarity=0.207 Sum_probs=330.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhcChhhHHHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHh----ccC
Q 004950 26 GESELVSKVAALLTGYAMEVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATM----KSL 101 (722)
Q Consensus 26 ~D~e~~~~~a~L~~~~g~el~~~~~~~~~~~~~~~~~~~l~~~~plvL~~~~~~d~~~~~~~~~F~~~~l~~l----k~~ 101 (722)
+|-.|.-++|.++.++-+-.+..++.. ..+ +.+-.-..+++..-.-++-++..++++.|..++..+ .+.
T Consensus 308 neq~Fvq~LA~fL~s~~~~~~~lLE~~------e~~-e~llnah~YLiqiSrInereiFkt~leyW~klVadLy~E~q~l 380 (1053)
T COG5101 308 NEQIFVQKLAQFLSSLYEVYISLLEAR------EMA-ENLLNAHGYLIQISRINEREIFKTALEYWNKLVADLYSEFQRL 380 (1053)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCh------hHH-HHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 456788888888888877777666631 112 122233344555555568888889999999976444 110
Q ss_pred -----C----------------------CCh-HHHHHHHHHHHHHHHHHcccCcccccCCccCCCCChhHHHHH------
Q 004950 102 -----S----------------------PLK-EEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRM------ 147 (722)
Q Consensus 102 -----~----------------------~l~-~~~~~~l~~Ll~~li~km~yp~~~~~~~d~~~~~~~ede~~F------ 147 (722)
. +++ ..+.+.+++|--+++.+|.=|++.--. .++.| |---+|
T Consensus 381 p~tem~Pli~ls~~s~~istnpn~~~~~pLrkhiY~~ilsqLrlvlienMvrPEEVliV---endeg-EivRefvketDt 456 (1053)
T COG5101 381 PATEMSPLIQLSVGSQAISTNPNQDSTKPLRKHIYIGILSQLRLVLIENMVRPEEVLIV---ENDEG-EIVREFVKETDT 456 (1053)
T ss_pred cccccCcchhccccchhccCCcchhcccchHHHHHHHHHHHHHHHHHHcCCCcceEEEE---ECCCc-HHHHHHhccccH
Confidence 0 111 236788999999999999988764210 01111 111111
Q ss_pred HHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHh
Q 004950 148 VEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQ 227 (722)
Q Consensus 148 ~e~Rk~l~~ll~~i~~l~~~l~l~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~ 227 (722)
-++-|.++..+-....+..+..-.+.-.-+...+. ++.-+|+.+-.-..++++++-...++. ++.++-.++.-|+.
T Consensus 457 I~lYksmRevLvyLthL~v~Dte~~mi~Klarq~d-g~EWsw~nlNtLcWAIGSISGamsE~~---EkrF~VnviKdLL~ 532 (1053)
T COG5101 457 IELYKSMREVLVYLTHLIVDDTEKYMIGKLARQLD-GKEWSWNNLNTLCWAIGSISGAMSEVN---EKRFFVNVIKDLLA 532 (1053)
T ss_pred hHHHHHHhhHHHHHhhhhhhhHHHHHHHHHHHHhc-CCccchhhHhHHHHHHhcccchhhhHH---HHHHHHHHHHHHHH
Confidence 12344555555544444433332333334443343 244589999999999998887776542 23344444332222
Q ss_pred ---CCCCCCChhHHHHHHHHHHHhhHHHHhhcCCChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhhccch----
Q 004950 228 ---TKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLV---- 300 (722)
Q Consensus 228 ---~~i~~~~hp~V~~~~~e~i~RY~~~~~~~p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L~---- 300 (722)
..-...+...|..-.+-++|.|.+|+..|-.+|..|..-++ --+|..++.|+--||--|-++++.|+.|.+
T Consensus 533 LcemKrgKdnKAVvASnIMyvvGQYpRFLkahw~FLkTVv~KLF--EFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~ 610 (1053)
T COG5101 533 LCEMKRGKDNKAVVASNIMYVVGQYPRFLKAHWSFLKTVVKKLF--EFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQE 610 (1053)
T ss_pred HHHHhhcCCcchhhecceeeeeccchHHHHHHHHHHHHHHHHHH--HHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCC
Confidence 11234455678888899999999999999999999999888 567778899999999999999999997763
Q ss_pred ----HHHHHHHHHhhhhhhhhccCCcccccCCCCchhhHHHHHHHHHHccCCCChhhhHHHHHHhHHHHHHHHHHHHHhh
Q 004950 301 ----PFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDA 376 (722)
Q Consensus 301 ----~~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~L~Eaig~Lis~~~~~~e~~~~~l~~ll~pl~~~l~~~~~~~ 376 (722)
|++..|+.-++.. +.+ +.+...--.|||.|.+|+...... .+...+-.++.-..+.+.....++
T Consensus 611 gesEpFI~~Iirnl~kt----------T~d-L~pqQ~htfYeAcg~vIse~p~~~-~~~rlv~dlm~Lpn~aw~niv~qa 678 (1053)
T COG5101 611 GESEPFIVYIIRNLPKT----------TGD-LEPQQKHTFYEACGMVISEVPKTR-DYKRLVLDLMDLPNSAWLNIVIQA 678 (1053)
T ss_pred CCCCcHHHHHHHhhhhh----------ccc-CChHHHhHHHHHHhHHHhccchhh-HHHHHHHHHHHhhHHHHHHHHHHh
Confidence 3444444444321 111 234445589999999999753222 223333334443444444443332
Q ss_pred h----ccCCchhhhHHHh--HHHHHHHHHHhhhccCCCccCCCcchHHHHHH---HHHHHHHHH-Hh--------cCCCC
Q 004950 377 K----MLNPEESTAKFAN--IQQIIMAINALSKGFNERLVTSSRPAIGLMFK---QTLDVLLQI-LV--------VFPKV 438 (722)
Q Consensus 377 ~----~~~~~~~~~~~~~--~~~~i~~l~~lakgf~~~~~~~~~~~~~~~~~---~~~~vi~~~-l~--------~~~~~ 438 (722)
. ..+|+.-....+. ..++. ...+++.+|=+..+..+ |..++- -...+-.++ ++ .+.+-
T Consensus 679 ~~n~~~L~d~~tvki~an~~ktnVa-~ctslg~~fyPq~~~~y---~~ml~ly~avs~~Is~~vaaeg~iatktp~vrgl 754 (1053)
T COG5101 679 DENINRLSDTMTVKIDANKMKTNVA-KCTSLGYRFYPQTCSSY---CIMLFLYFAVSFDISNSVAAEGLIATKTPAVRGL 754 (1053)
T ss_pred hhhhhhhcchhHHHHHHHHHHHHHH-HHhhcccccchHHHHHH---HHHHHHHHHHHHHHHHHHHhcccccccCccccch
Confidence 1 1122211111111 22222 22334444432211111 111111 011111111 11 01111
Q ss_pred hhHHhHHHHHHHHHH------HhcCcccccchHHHHHHHH----hcCChhhHHHHHHHHHHHHHHHhhhHHHHHHhhhHH
Q 004950 439 EPLRCKVTSFIHRMV------DTLGASVFPYLPKALEQLL----AESEPKEMAGFLVLLNQLICKFNTLVHDILDEVFPA 508 (722)
Q Consensus 439 ~~Vre~~~~~~~r~v------~~lg~~v~p~lp~li~~ll----~~~~~~~~~~fL~~~~qli~~f~~~~~~~l~~ll~~ 508 (722)
..|......++.--+ ...+. .++|.+++..+ ++....+-.+.|.+...+|.+-+.-++.-..-.+..
T Consensus 755 rtiKkEIlkLv~tyIska~dl~~V~n---~lv~~l~eaVl~DY~nNvPdardaevLnl~ttiV~~v~~~i~~~~~l~l~s 831 (1053)
T COG5101 755 RTIKKEILKLVATYISKARDLKFVQN---DLVNMLCEAVLFDYKNNVPDARDAEVLNLGTTIVRNVESVIYLQRELFLIS 831 (1053)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHH---HHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 222222222222111 11222 23344444333 332222336778888888887764333222111111
Q ss_pred HHHHHHhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeeecCCCCcCChHHHHHHHHHhhcCCCchHHH
Q 004950 509 IAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVR 588 (722)
Q Consensus 509 l~~~v~~~l~~~~~~~~p~~~~d~~r~~~~l~r~y~~fl~~i~~~~~~~vl~s~~~~~~l~~~l~~l~~~~~~~~d~~~~ 588 (722)
.+.-...++.. ++-|-++.+++|+.++-.+.-+..++. ++ -.+|.|..+..+++. +..|..-.+.
T Consensus 832 vf~ctl~mi~k------------df~EypEhr~~f~~Ll~~inl~sF~af-l~-~p~p~Fklv~nti~w-sfkhi~RDv~ 896 (1053)
T COG5101 832 VFICTLIMIVK------------DFDEYPEHRKNFLLLLENINLFSFSAF-LS-FPQPSFKLVYNTILW-SFKHINRDVS 896 (1053)
T ss_pred HHhhhHHHHHh------------hhhhChHHHHHHHHHHHHHHHHhHHHH-Hc-CCcHHHHHHHHHHHH-HHHhccchHh
Confidence 11111112221 223455688999999998877665544 44 456678888888885 3433333333
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCCchh-HHHHHHHhhhhhhhhhccc----CCCCCCCchhHHHHHHHHHHHHHH------
Q 004950 589 KACVQIFIRLIKDWCARPFVEEKVPG-FQSFMIEAFAMNCCLYSVL----DKSFEFGDANTLVLFGEIVLAQKV------ 657 (722)
Q Consensus 589 k~a~~~l~~li~~~~~~~~~~~~~~g-f~~fl~~~~~~~~~~~~~~----~~~F~~~Da~~~~~l~eia~~l~~------ 657 (722)
..+++++..++......++ +-+.. |.++-+..+-.. ++... +++|+ -|+ .++.-...+-+.
T Consensus 897 ~~gLnill~l~kn~~~mg~--~~~n~F~~~yy~s~l~~i--l~vltDsDhKsgF~---~Q~-Llla~li~lv~dnkisVP 968 (1053)
T COG5101 897 DLGLNILLILFKNCHEMGV--PFINQFYAQYYMSTLENI--LGVLTDSDHKSGFD---QQC-LLLAFLIRLVKDNKISVP 968 (1053)
T ss_pred hhhhHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHH--Heeeeccchhccch---HHH-HHHHHHHHHHhccccccc
Confidence 4888888888866543211 11222 234444332221 23322 34443 333 222222222221
Q ss_pred HHH------HhhhHHHHHHHhccCCCCCCCHHHHHHHHHHhcc--CCchHHHHHHHHHHHHH
Q 004950 658 MYE------KFGNDFLVHFVTKGFPSAHCPPDLAEQYCQKLQG--NDIKALKSFYQSLIEKL 711 (722)
Q Consensus 658 l~~------~~g~e~~~~l~~~~lP~~~~~~~~~~~f~~~l~~--~~~k~~k~~~~~f~~~~ 711 (722)
++. ..-++++.-+....||. ++++...-|...|.. .|..-||.++.+|.-+.
T Consensus 969 lyd~~~~n~~~lseyi~~l~~~sfp~--it~e~v~~f~~~l~~~~~d~~ifk~~~~df~vkv 1028 (1053)
T COG5101 969 LYDGINPNITILSEYIVGLFVKSFPN--ITQESVKIFSVGLFELCGDDEIFKEHVEDFRVKV 1028 (1053)
T ss_pred cccCCCCchhhHHHHHHHHHHhhcCc--ccHHHHHHHHHHHHHHhCcHHHHHHHHHHHhhhe
Confidence 000 11133444444568887 779999999999965 57788999999986553
No 9
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=3.1e-06 Score=99.22 Aligned_cols=457 Identities=17% Similarity=0.189 Sum_probs=259.0
Q ss_pred HHHHHHHHHHHHHHHc-ChhhHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHh
Q 004950 149 EYRKDLLVLLRSVGRV-APEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQ 227 (722)
Q Consensus 149 e~Rk~l~~ll~~i~~l-~~~l~l~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~ 227 (722)
..||+++++.-.|++- .|+..=+.+ +.+.+... +++-+..|.|++.++++.+.+++.. ..++..+.+++.+
T Consensus 95 ~vr~k~~dviAeia~~~l~e~WPell-~~L~q~~~---S~~~~~rE~al~il~s~~~~~~~~~----~~~~~~l~~lf~q 166 (1075)
T KOG2171|consen 95 SVRHKLADVIAEIARNDLPEKWPELL-QFLFQSTK---SPNPSLRESALLILSSLPETFGNTL----QPHLDDLLRLFSQ 166 (1075)
T ss_pred HHHHHHHHHHHHHHHhccccchHHHH-HHHHHHhc---CCCcchhHHHHHHHHhhhhhhcccc----chhHHHHHHHHHH
Confidence 4899999999988884 344232222 33333332 2455667999999999999988542 3567778887777
Q ss_pred CCCCCCChhHHHHHHHHHHHhhHHHHhhcC-------CChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhhccch
Q 004950 228 TKLPCHSNRLVALVYLETVTRYMKFIQEHT-------QYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLV 300 (722)
Q Consensus 228 ~~i~~~~hp~V~~~~~e~i~RY~~~~~~~p-------~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L~ 300 (722)
. +....+| ||.+..-.++-|..+.+.++ ..||.+++.+- .-+...+.....-+--+|.-|...+-+.+.
T Consensus 167 ~-~~d~s~~-vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~--~~i~~~d~~~a~~~l~~l~El~e~~pk~l~ 242 (1075)
T KOG2171|consen 167 T-MTDPSSP-VRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQ--EVIQDGDDDAAKSALEALIELLESEPKLLR 242 (1075)
T ss_pred h-ccCCcch-HHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhH--hhhhccchHHHHHHHHHHHHHHhhchHHHH
Confidence 4 6666777 99999999999999996333 45777776664 455555554444445556777778889999
Q ss_pred HHHHHHHHHhhhhhhhhccCCcccccCCCCchhhHHHHHHHHHHccCCCChhhhHHHHHHhHHHHHHHHHHHHHhhhc--
Q 004950 301 PFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKM-- 378 (722)
Q Consensus 301 ~~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~L~Eaig~Lis~~~~~~e~~~~~l~~ll~pl~~~l~~~~~~~~~-- 378 (722)
|+++++++..-.+...+ ++ ..+-+-...|-+-.++... |. ..+....+..|++-.+-.+.....-
T Consensus 243 ~~l~~ii~~~l~Ia~n~--------~l-~~~~R~~ALe~ivs~~e~A--p~--~~k~~~~~~~~lv~~~l~~mte~~~D~ 309 (1075)
T KOG2171|consen 243 PHLSQIIQFSLEIAKNK--------EL-ENSIRHLALEFLVSLSEYA--PA--MCKKLALLGHTLVPVLLAMMTEEEDDD 309 (1075)
T ss_pred HHHHHHHHHHHHHhhcc--------cc-cHHHHHHHHHHHHHHHHhh--HH--HhhhchhhhccHHHHHHHhcCCcccch
Confidence 99999999886654321 11 2222444455555555541 11 1122222444444444333321110
Q ss_pred ---cCCchhhhH-HHhHHHHHHHHHHhhhccCCCcc------------CCC----c-----------chH----HHHHHH
Q 004950 379 ---LNPEESTAK-FANIQQIIMAINALSKGFNERLV------------TSS----R-----------PAI----GLMFKQ 423 (722)
Q Consensus 379 ---~~~~~~~~~-~~~~~~~i~~l~~lakgf~~~~~------------~~~----~-----------~~~----~~~~~~ 423 (722)
+.|+.+... -..-++...++.++|.++++... .++ + .|| ...+.+
T Consensus 310 ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~ 389 (1075)
T KOG2171|consen 310 EWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPK 389 (1075)
T ss_pred hhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 001100000 01145677788888888875321 000 1 123 334555
Q ss_pred HHHHHHHHHhcCCCChhHHhHHHHHHHHHHHhcCcccccc----hHHHHHHHHhcCChhhHHHHHHHHHHHHHHHhhhHH
Q 004950 424 TLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPY----LPKALEQLLAESEPKEMAGFLVLLNQLICKFNTLVH 499 (722)
Q Consensus 424 ~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~lg~~v~p~----lp~li~~ll~~~~~~~~~~fL~~~~qli~~f~~~~~ 499 (722)
++++++.-++ ..+++||-+||.+++.|..-+.+++.-+ +|..+...+...+.+++ ...-.+-++.-+-+...
T Consensus 390 Il~~Vl~~l~--DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV--~ahAa~al~nf~E~~~~ 465 (1075)
T KOG2171|consen 390 ILPIVLNGLN--DPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRV--QAHAAAALVNFSEECDK 465 (1075)
T ss_pred HHHHHHhhcC--CCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHH--HHHHHHHHHHHHHhCcH
Confidence 6666666665 6779999999999999999999887533 23222223333332222 11222333433333356
Q ss_pred HHHHhhhHHHHHHHHhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeeecCCCCcCChHHHHHHHHHhh
Q 004950 500 DILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTS 579 (722)
Q Consensus 500 ~~l~~ll~~l~~~v~~~l~~~~~~~~p~~~~d~~r~~~~l~r~y~~fl~~i~~~~~~~vl~s~~~~~~l~~~l~~l~~~~ 579 (722)
+.+..+|..++++.+..|.+.+ + +.+++.-.+-+.++...- -+...|+++.++-.+.+..
T Consensus 466 ~~l~pYLd~lm~~~l~~L~~~~----~----------~~v~e~vvtaIasvA~AA------~~~F~pY~d~~Mp~L~~~L 525 (1075)
T KOG2171|consen 466 SILEPYLDGLMEKKLLLLLQSS----K----------PYVQEQAVTAIASVADAA------QEKFIPYFDRLMPLLKNFL 525 (1075)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC----c----------hhHHHHHHHHHHHHHHHH------hhhhHhHHHHHHHHHHHHH
Confidence 7777888889998888887642 1 125555555555555422 1234568888777777665
Q ss_pred cCCCch--HHHHH----HHHHHHHHHHHhhCCCCCCCCchhHHHHHHHhhhhhhhhhcccCCCCCCCchhHHHHHHHHHH
Q 004950 580 CNHKDY--LVRKA----CVQIFIRLIKDWCARPFVEEKVPGFQSFMIEAFAMNCCLYSVLDKSFEFGDANTLVLFGEIVL 653 (722)
Q Consensus 580 ~~~~d~--~~~k~----a~~~l~~li~~~~~~~~~~~~~~gf~~fl~~~~~~~~~~~~~~~~~F~~~Da~~~~~l~eia~ 653 (722)
.+..+. -..|. |++.+..-| |. +..-.+.+-+++-...+ | . ..-+..|.+.-+.++-.
T Consensus 526 ~n~~~~d~r~LrgktmEcisli~~AV----Gk----e~F~~~a~eliqll~~~-~-~----~~~~~dd~~~sy~~~~w-- 589 (1075)
T KOG2171|consen 526 QNADDKDLRELRGKTMECLSLIARAV----GK----EKFLPLAEELIQLLLEL-Q-G----SDQDDDDPLRSYMIAFW-- 589 (1075)
T ss_pred hCCCchhhHHHHhhHHHHHHHHHHHh----hh----hhhhHhHHHHHHHHHhh-c-c----cchhhccccHHHHHHHH--
Confidence 554432 22221 222222211 11 23334444455544333 2 1 12244667765555444
Q ss_pred HHHHHHHHhhhHHHHHHHh
Q 004950 654 AQKVMYEKFGNDFLVHFVT 672 (722)
Q Consensus 654 ~l~~l~~~~g~e~~~~l~~ 672 (722)
-.|.+.+|++|..|+..
T Consensus 590 --armc~ilg~~F~p~L~~ 606 (1075)
T KOG2171|consen 590 --ARMCRILGDDFAPFLPV 606 (1075)
T ss_pred --HHHHHHhchhhHhHHHH
Confidence 44566788888877763
No 10
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=4e-05 Score=88.63 Aligned_cols=466 Identities=15% Similarity=0.171 Sum_probs=249.4
Q ss_pred hhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHH-HHcccCcccccCCccCCCCChhHH-----HHHHH-HHHHHH--
Q 004950 85 FSIVQFLSGYVATMKSLSPLKEEQRLHAGQILEVIL-TQIRYDPMYRNNLDVLDKIGIEEE-----DRMVE-YRKDLL-- 155 (722)
Q Consensus 85 ~~~~~F~~~~l~~lk~~~~l~~~~~~~l~~Ll~~li-~km~yp~~~~~~~d~~~~~~~ede-----~~F~e-~Rk~l~-- 155 (722)
.-+..|...|++..-+......-.+||+.-++..+| =-|.|.+.++ +.|.+ |.+|- +-|++ ++-+.+
T Consensus 318 ~rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~de--elwe~--DP~EYiR~~~Di~ed~~sp~~Aa~ 393 (1010)
T KOG1991|consen 318 DRVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDE--ELWEE--DPYEYIRKKFDIFEDGYSPDTAAL 393 (1010)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccH--HHHhc--CHHHHHHhcCchhcccCCCcHHHH
Confidence 377777778776653333344556777777765544 3445644433 23421 11111 11222 233333
Q ss_pred HHHHHHHHcChhhHH----HHHHHHHHHHhcC-CCCCChhhHHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhCCC
Q 004950 156 VLLRSVGRVAPEVTQ----VFIRNSLANAVTF-SADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKL 230 (722)
Q Consensus 156 ~ll~~i~~l~~~l~l----~~i~~~l~~~l~~-~~~~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~~i 230 (722)
+++-.+++-.....+ .|+...+.+.-.. .++.+-+..|-||+.++++++.+... ..+...|..++...+
T Consensus 394 ~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~------s~~~~~mE~flv~hV 467 (1010)
T KOG1991|consen 394 DFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKK------SPYKSQMEYFLVNHV 467 (1010)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccC------CchHHHHHHHHHHHh
Confidence 334444454423333 3444444433222 34457889999999999999887754 233344443333221
Q ss_pred -----CCCChhHHHHHHHHHHHhhHHHHhhcCCChHHHHHHhccccCCC-CCCchhHHHHHHHHHHHHHHhhcc---chH
Q 004950 231 -----PCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIH-HPNVHVSRRASYLFMRVVKLLKAK---LVP 301 (722)
Q Consensus 231 -----~~~~hp~V~~~~~e~i~RY~~~~~~~p~~L~~vL~~~l~~~Gl~-~~~~~V~~ra~ylf~r~~k~~r~~---L~~ 301 (722)
++..| .|--+||++++|++-==..|..+..+++.-. .|+. +++.-||--|+.++..|+..|... +.+
T Consensus 468 fP~f~s~~g~--Lrarac~vl~~~~~~df~d~~~l~~ale~t~--~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~ 543 (1010)
T KOG1991|consen 468 FPEFQSPYGY--LRARACWVLSQFSSIDFKDPNNLSEALELTH--NCLLNDNELPVRVEAALALQSFISNQEQADEKVSA 543 (1010)
T ss_pred hHhhcCchhH--HHHHHHHHHHHHHhccCCChHHHHHHHHHHH--HHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhh
Confidence 23455 8889999999999654456777888888887 7887 577779999999999999999855 889
Q ss_pred HHHHHHHHhhhhhhhhccCCcccccCCCCchhhHHHHHHHHHHccCCCChhhhHHHHHHhHHHHHHHHHHHHHhhhccCC
Q 004950 302 FIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNP 381 (722)
Q Consensus 302 ~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~L~Eaig~Lis~~~~~~e~~~~~l~~ll~pl~~~l~~~~~~~~~~~~ 381 (722)
+++++.+.+-.+.... ..|+--.++|. ++.. =+|+...+--.++.-|.+.+-++++..... +
T Consensus 544 hvp~~mq~lL~L~ne~-----------End~Lt~vme~---iV~~---fseElsPfA~eL~q~La~~F~k~l~~~~~~-~ 605 (1010)
T KOG1991|consen 544 HVPPIMQELLKLSNEV-----------ENDDLTNVMEK---IVCK---FSEELSPFAVELCQNLAETFLKVLQTSEDE-D 605 (1010)
T ss_pred hhhHHHHHHHHHHHhc-----------chhHHHHHHHH---HHHH---HHHhhchhHHHHHHHHHHHHHHHHhccCCC-C
Confidence 9999988875543211 23444444444 3332 124555566677777788888887752111 1
Q ss_pred chhhhHHHhHHHHHHHHHHhhhccCCCc-cCCC-cc------------hHHHHHH---------------------HHHH
Q 004950 382 EESTAKFANIQQIIMAINALSKGFNERL-VTSS-RP------------AIGLMFK---------------------QTLD 426 (722)
Q Consensus 382 ~~~~~~~~~~~~~i~~l~~lakgf~~~~-~~~~-~~------------~~~~~~~---------------------~~~~ 426 (722)
+.+...-..+.-++..+.++--.+.+.. .-.+ .| .+.+.+. ++|+
T Consensus 606 ~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW~ll~ 685 (1010)
T KOG1991|consen 606 ESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIMWGLLE 685 (1010)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHHHHHHH
Confidence 1111111223444444554444444321 0000 00 0011111 1222
Q ss_pred HHHHHHhcCCCChhHHhHHHHHHHHHHHhcCcccc--c-c---hHHHHHHHHhc--CChhhHHHHHHHHHHHHHHHhhhH
Q 004950 427 VLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVF--P-Y---LPKALEQLLAE--SEPKEMAGFLVLLNQLICKFNTLV 498 (722)
Q Consensus 427 vi~~~l~~~~~~~~Vre~~~~~~~r~v~~lg~~v~--p-~---lp~li~~ll~~--~~~~~~~~fL~~~~qli~~f~~~~ 498 (722)
.+..++..+. -+--....-++|..+..-++.++ | | +-.++...+.+ .+-.+......++..++-.+|+
T Consensus 686 li~e~~~~~~--~dyf~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg-- 761 (1010)
T KOG1991|consen 686 LILEVFQDDG--IDYFTDMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKG-- 761 (1010)
T ss_pred HHHHHHhhhh--HHHHHHHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcC--
Confidence 2333222211 12222233444444444333332 2 1 11122222322 1224444455666666666664
Q ss_pred HHHHHhhhHHHHHHHHhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeeecCCCCcCChHHHHHHHHHh
Q 004950 499 HDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYT 578 (722)
Q Consensus 499 ~~~l~~ll~~l~~~v~~~l~~~~~~~~p~~~~d~~r~~~~l~r~y~~fl~~i~~~~~~~vl~s~~~~~~l~~~l~~l~~~ 578 (722)
.+++..+++++-+.+-+... +.+ ..++...++.+.+.+=.+|.-.+---.+.+....++..|++.
T Consensus 762 --~~dq~iplf~~~a~~~l~~~-----~e~--------s~~~~~~leVvinalyynP~ltL~iLe~~~~~~~ff~~wf~~ 826 (1010)
T KOG1991|consen 762 --LLDQYIPLFLELALSRLTRE-----VET--------SELRVMLLEVVINALYYNPKLTLGILENQGFLNNFFTLWFQF 826 (1010)
T ss_pred --cHhhHhHHHHHHHHHHHhcc-----ccc--------hHHHHHHHHHHHHHHHcCcHHHHHHHHHcCCcccHHHHHHHH
Confidence 56778888888887777752 111 125556666665555556543333334555555666666654
Q ss_pred hcCCCchHHHHHHHHHHHHHHHH
Q 004950 579 SCNHKDYLVRKACVQIFIRLIKD 601 (722)
Q Consensus 579 ~~~~~d~~~~k~a~~~l~~li~~ 601 (722)
-....--..+|.|+-++..++..
T Consensus 827 ~~~~~~~HDkKlcvL~l~tli~l 849 (1010)
T KOG1991|consen 827 INQFKKVHDKKLCVLGLLTLISL 849 (1010)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhc
Confidence 33333366799999999999844
No 11
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.65 E-value=2.7e-05 Score=89.13 Aligned_cols=267 Identities=17% Similarity=0.211 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHhhhhhhhhccCCcccccCCCCchhhHHHHHHHHHHccC-CCChhhhHHHHHH
Q 004950 282 RRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGME-DVPPEKQSDYLSS 360 (722)
Q Consensus 282 ~ra~ylf~r~~k~~r~~L~~~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~L~Eaig~Lis~~-~~~~e~~~~~l~~ 360 (722)
--|..++..++...+..+.+|++.++..+.-.|. +. +..++ -..++.+.+.++. +-+++....++..
T Consensus 453 ~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~----------Dk-Ssss~-~ki~~L~fl~~~L~s~~p~~fhp~~~~ 520 (1233)
T KOG1824|consen 453 QGCFLLLTELINVLPGALAQHIPSLVPGIIYSLN----------DK-SSSSN-LKIDALVFLYSALISHPPEVFHPHLSA 520 (1233)
T ss_pred hhHHHHHHHHHHhCcchhhhcccccchhhhhhcC----------Cc-cchHH-HHHHHHHHHHHHHhcCChhhcccchhh
Confidence 3345566778888888888888887777755443 11 12222 4456666666643 2367777777777
Q ss_pred hHHHHHHHHHHHHHhhhccCCchhhhHHHhHHHHHHHHHHhhhccCCCccCCCcchHHHHHHHHHHHHHHHHhcCCCChh
Q 004950 361 LLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEP 440 (722)
Q Consensus 361 ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~lakgf~~~~~~~~~~~~~~~~~~~~~vi~~~l~~~~~~~~ 440 (722)
+.+|+...+..-.-+- ....+...+.+-|..++...+.. ......+.++....++-+++-..+-+
T Consensus 521 Ls~~v~~aV~d~fyKi--------------saEAL~v~~~lvkvirpl~~~~~-~d~~~~v~~m~~~tl~rL~a~d~Dqe 585 (1233)
T KOG1824|consen 521 LSPPVVAAVGDPFYKI--------------SAEALLVCQQLVKVIRPLQPPSS-FDASPYVKTMYDCTLQRLKATDSDQE 585 (1233)
T ss_pred hhhHHHHHhcCchHhh--------------hHHHHHHHHHHHHHhcccCCCcc-CCCChhHHHHHHHHHHHHhcccccHH
Confidence 7777765553221110 11223333344444454332221 11234677888889999998889999
Q ss_pred HHhHHHHHHHHHHHhcCcccccchHHHHHHHHhcC--ChhhHHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHhhcc
Q 004950 441 LRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAES--EPKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIP 518 (722)
Q Consensus 441 Vre~~~~~~~r~v~~lg~~v~p~lp~li~~ll~~~--~~~~~~~fL~~~~qli~~f~~~~~~~l~~ll~~l~~~v~~~l~ 518 (722)
|||++..|++..+..+|+..-..+|..+..|+... +.+++..+=.+.-....-..=+..+.+...++ .+.+.+.
T Consensus 586 VkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~----~l~~flr 661 (1233)
T KOG1824|consen 586 VKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNEITRLTAVKALTLIAMSPLDIDLSPVLTEILP----ELASFLR 661 (1233)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhchhHHHHHHHHHHHHHhccceeehhhhHHHHHH----HHHHHHH
Confidence 99999999999999999888888888888777754 45665543322211111111112333333222 2222222
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeeecCCCCcCChHHHHHHHHHhhcCCCchHHHHHHHHHHHHH
Q 004950 519 RDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRL 598 (722)
Q Consensus 519 ~~~~~~~p~~~~d~~r~~~~l~r~y~~fl~~i~~~~~~~vl~s~~~~~~l~~~l~~l~~~~~~~~d~~~~k~a~~~l~~l 598 (722)
+.++-++-.+++++..++++... .+-.+ .++.++.-+.. ....+|-.....|+.+++-+
T Consensus 662 ---------------K~~r~lr~~~l~a~~~L~~~~~~-~~~~~----~~e~vL~el~~-Lisesdlhvt~~a~~~L~tl 720 (1233)
T KOG1824|consen 662 ---------------KNQRALRLATLTALDKLVKNYSD-SIPAE----LLEAVLVELPP-LISESDLHVTQLAVAFLTTL 720 (1233)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHhc-cccHH----HHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHH
Confidence 35666888888999888887633 22221 23334333221 12334555555666666655
Q ss_pred HH
Q 004950 599 IK 600 (722)
Q Consensus 599 i~ 600 (722)
..
T Consensus 721 ~~ 722 (1233)
T KOG1824|consen 721 AI 722 (1233)
T ss_pred Hh
Confidence 43
No 12
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=98.65 E-value=4.8e-05 Score=86.99 Aligned_cols=438 Identities=16% Similarity=0.167 Sum_probs=239.2
Q ss_pred hhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHcccCcccccCCccCCCC----ChhHHHHHHHHHHHHHHHHHH
Q 004950 85 FSIVQFLSGYVATMKSLSPLKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKI----GIEEEDRMVEYRKDLLVLLRS 160 (722)
Q Consensus 85 ~~~~~F~~~~l~~lk~~~~l~~~~~~~l~~Ll~~li~km~yp~~~~~~~d~~~~~----~~ede~~F~e~Rk~l~~ll~~ 160 (722)
-..++|.+..++..+-..++. ..+..++..++.=++.++..- ..|.++. ++|++. ..-|-+.++++-.
T Consensus 317 i~i~eF~s~i~t~~~~~~ti~----~~l~~lI~~~v~y~Qlseeqi--e~w~sD~~~fV~dEd~~--~~~~~~~rd~~~~ 388 (1005)
T KOG2274|consen 317 IQIVEFLSTIVTNRFLSKTIK----KNLPELIYQLVAYLQLSEEQI--EVWTSDVNQFVADEDDG--YTARISVRDLLLE 388 (1005)
T ss_pred hhHHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHHHhhHHHH--HHHhccHHHhhccCCCC--chhhhhHHHHHHH
Confidence 367899998876654222121 123344444444444333221 1221110 111111 3457777777665
Q ss_pred HHHcChhhHHHHHHHHHHHHhc------C-CCCCChhhHHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhCCCCCC
Q 004950 161 VGRVAPEVTQVFIRNSLANAVT------F-SADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCH 233 (722)
Q Consensus 161 i~~l~~~l~l~~i~~~l~~~l~------~-~~~~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~~i~~~ 233 (722)
++.-.+.....-+.....+.++ . .+...|---|+.+....+++++.... ..+..+..++.. ++...
T Consensus 389 v~~~f~~~~i~~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~~~~~~d------d~l~~l~~~~~~-~l~~~ 461 (1005)
T KOG2274|consen 389 VITTFGNEGINPIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVRIDDAND------DKLIELTIMIDN-GLVYQ 461 (1005)
T ss_pred HHHhccchhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcccCcchH------HHHHHHHHHHHh-hcccc
Confidence 5553333333333333222221 0 12345888899999998888543221 223333333332 23323
Q ss_pred ChhHHHHHHHHHHHhhHHHHhhcCCChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhhccc-hHHHHHHHHHhhh
Q 004950 234 SNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKL-VPFIENILQSLQD 312 (722)
Q Consensus 234 ~hp~V~~~~~e~i~RY~~~~~~~p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L-~~~~~~il~~l~~ 312 (722)
.-|..-.-+++++++|++=+..+|+.+...|+.-+...+++.+. -+|.+|+-+|..+| +.++ .+..+.||..+-.
T Consensus 462 e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~-~~ki~a~~~~~~~~---~~~vl~~~~p~ild~L~q 537 (1005)
T KOG2274|consen 462 ESPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPP-PVKISAVRAFCGYC---KVKVLLSLQPMILDGLLQ 537 (1005)
T ss_pred cCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCC-chhHHHHHHHHhcc---CceeccccchHHHHHHHH
Confidence 34555559999999999999999999999999998555555443 47888865565555 5444 6889999988877
Q ss_pred hhhhhccCCcccccCCCCchhhHHHHHHHHHHccCCCChhhhHHHHHHhHHHHHHHHHHHHHhhhccCCchhhhHHHhHH
Q 004950 313 TIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQ 392 (722)
Q Consensus 313 ll~~~~~~~~~~~~~~~~~d~l~L~Eaig~Lis~~~~~~e~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~~~ 392 (722)
+.. +. +.|-..-|+|++..++.. ++ +....++..+.|+...+-......+.. -+..+....++.
T Consensus 538 las-~~----------s~evl~llmE~Ls~vv~~---dp-ef~as~~skI~P~~i~lF~k~s~DP~V-~~~~qd~f~el~ 601 (1005)
T KOG2274|consen 538 LAS-KS----------SDEVLVLLMEALSSVVKL---DP-EFAASMESKICPLTINLFLKYSEDPQV-ASLAQDLFEELL 601 (1005)
T ss_pred Hcc-cc----------cHHHHHHHHHHHHHHhcc---Ch-hhhhhhhcchhHHHHHHHHHhcCCchH-HHHHHHHHHHHH
Confidence 653 11 233356889999999986 44 344455666666655543322111000 000001111123
Q ss_pred HHHHHHHHhhhcc--------CCC--ccC-----------------CCcchHHHHHHHHHHHHHHHHhcCCCChhHHhHH
Q 004950 393 QIIMAINALSKGF--------NER--LVT-----------------SSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKV 445 (722)
Q Consensus 393 ~~i~~l~~lakgf--------~~~--~~~-----------------~~~~~~~~~~~~~~~vi~~~l~~~~~~~~Vre~~ 445 (722)
|...+.|....-+ ... ..+ .+.|-.......+.|.+.+|. .+..+....+.+
T Consensus 602 q~~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~t-lHsdD~~tlQ~~ 680 (1005)
T KOG2274|consen 602 QIAANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKIT-LHSDDHETLQNA 680 (1005)
T ss_pred HHHHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhhe-eecCChHHHHhH
Confidence 3222222221111 000 000 000112335666888888888 677888999999
Q ss_pred HHHHHHHHHhcCccc----------ccchHHHHHHHHhcCChhhHHHHH--HHHHHHHHHHhhhHHHHHHhhhHHHHHHH
Q 004950 446 TSFIHRMVDTLGASV----------FPYLPKALEQLLAESEPKEMAGFL--VLLNQLICKFNTLVHDILDEVFPAIAGRI 513 (722)
Q Consensus 446 ~~~~~r~v~~lg~~v----------~p~lp~li~~ll~~~~~~~~~~fL--~~~~qli~~f~~~~~~~l~~ll~~l~~~v 513 (722)
.-|++.++..-.+++ +-++=+++.+|+. .+..+..++. +++.+++.+++.++.+.+++.|..++.|+
T Consensus 681 ~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLd-p~~sds~a~~VG~lV~tLit~a~~el~~n~d~IL~Avisrm 759 (1005)
T KOG2274|consen 681 TECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLD-PETSDSAAAFVGPLVLTLITHASSELGPNLDQILRAVISRL 759 (1005)
T ss_pred HHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcC-CccchhHHHHHhHHHHHHHHHHHHHhchhHHHHHHHHHHHH
Confidence 999998887722221 3355566666664 2334444443 67779999999999999999888887766
Q ss_pred HhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCee------ecCCCCcCChHHHHHHHHH
Q 004950 514 FNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSV------FLSPKSRGYLDPIMQLLLY 577 (722)
Q Consensus 514 ~~~l~~~~~~~~p~~~~d~~r~~~~l~r~y~~fl~~i~~~~~~~v------l~s~~~~~~l~~~l~~l~~ 577 (722)
...=+ + + +.++.+..+.+++-+++.++ +..+.+.|.|+.++.-|+.
T Consensus 760 q~ae~-------l-------s----viQsLi~VfahL~~t~~~~~l~FL~Slp~~~g~~AlefVMteW~s 811 (1005)
T KOG2274|consen 760 QQAET-------L-------S----VIQSLIMVFAHLVHTDLDQLLNFLSSLPGPTGEPALEFVMTEWTS 811 (1005)
T ss_pred HHhhh-------H-------H----HHHHHHHHHHHHhhCCHHHHHHHHHhCCCCCCCcHHHHHHHHHHh
Confidence 42110 1 1 33333333333333332221 1335667778888887773
No 13
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=98.57 E-value=1.6e-06 Score=92.47 Aligned_cols=223 Identities=15% Similarity=0.322 Sum_probs=148.4
Q ss_pred chHHHHHHHHhcC----ChhhHHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHhhccCCCCCCCCCCCCHHHHHHHH
Q 004950 463 YLPKALEQLLAES----EPKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQE 538 (722)
Q Consensus 463 ~lp~li~~ll~~~----~~~~~~~fL~~~~qli~~f~~~~~~~l~~ll~~l~~~v~~~l~~~~~~~~p~~~~d~~r~~~~ 538 (722)
++|++++.++..+ ...+-++.|++...+|.|.++.+.+.+...+..+++.+..++.+. -...||
T Consensus 68 ~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d-----~~~yPe------- 135 (319)
T PF08767_consen 68 FIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKD-----FEEYPE------- 135 (319)
T ss_dssp THHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSST-----SSSSHH-------
T ss_pred HHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhh-----hhhChH-------
Confidence 4466666555544 234668999999999999998766666666667777778888753 233445
Q ss_pred HHHHHHHHHHHHHhcCCCeeecCCCCcCChHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhCCCCCCCCchh-HHH
Q 004950 539 LQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDWCARPFVEEKVPG-FQS 617 (722)
Q Consensus 539 l~r~y~~fl~~i~~~~~~~vl~s~~~~~~l~~~l~~l~~~~~~~~d~~~~k~a~~~l~~li~~~~~~~~~~~~~~g-f~~ 617 (722)
.+.+||.|+.+++.+....++.=+ ...+..++.++.. +..|++..+...|++.+..+++.+...++ +.... +.+
T Consensus 136 ~r~~ff~LL~~i~~~~f~~l~~lp--~~~f~~~idsi~w-g~kh~~~~I~~~~L~~l~~ll~~~~~~~~--~~~~~F~~~ 210 (319)
T PF08767_consen 136 HRVNFFKLLRAINEHCFPALLQLP--PEQFKLVIDSIVW-GFKHTNREISETGLNILLELLNNVSKTNP--EFANQFYQQ 210 (319)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHS---HHHHHHHHHHHHH-HHTSSSHHHHHHHHHHHHHHHHHHHH-SH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHcCC--HHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHH
Confidence 899999999999998765443322 3357778887764 68899999999999999999988765211 11122 234
Q ss_pred HHHHhhhhhhhhhcccCCCCCCCchhHHHHHHHHHHHHHHHHHH---------------hh----hHHHHHHHhccCCCC
Q 004950 618 FMIEAFAMNCCLYSVLDKSFEFGDANTLVLFGEIVLAQKVMYEK---------------FG----NDFLVHFVTKGFPSA 678 (722)
Q Consensus 618 fl~~~~~~~~~~~~~~~~~F~~~Da~~~~~l~eia~~l~~l~~~---------------~g----~e~~~~l~~~~lP~~ 678 (722)
|...-+.. .+.+.. |......+.+.+.+|..|... .. .+++..+....||.
T Consensus 211 y~~~il~~--if~vlt-------D~~Hk~gf~~q~~iL~~Lf~~ve~~~i~~~l~~~~~~n~~~v~~~i~~~L~~~Fp~- 280 (319)
T PF08767_consen 211 YYLDILQD--IFSVLT-------DSDHKSGFKLQSQILSNLFRLVESGSIQVPLFDPGMSNQEFVSEYIANLLSEAFPN- 280 (319)
T ss_dssp HHHHHHHH--HHHHHH-------STT-GGGHHHHHHHHHHHHHHHHTT-SSSSSSSTTT-HHHHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHH--HHHHHH-------CcccHHHHHHHHHHHHHHHHHHHcccccccccCCCCccHHHHHHHHHHHHHHhCCC-
Confidence 43332222 133322 233334556778888887743 11 23344444567888
Q ss_pred CCCHHHHHHHHHHhcc--CCchHHHHHHHHHHHHHhh
Q 004950 679 HCPPDLAEQYCQKLQG--NDIKALKSFYQSLIEKLRV 713 (722)
Q Consensus 679 ~~~~~~~~~f~~~l~~--~~~k~~k~~~~~f~~~~r~ 713 (722)
+++++...|++.+-+ .|...||..++||.-+.|-
T Consensus 281 -l~~~qi~~fv~~Lf~~~~d~~~Fk~~lrDFlI~~ke 316 (319)
T PF08767_consen 281 -LSPKQIENFVQGLFELNNDPEKFKTHLRDFLIQLKE 316 (319)
T ss_dssp -S-HHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHTS
T ss_pred -CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhh
Confidence 779999999999976 3579999999999998873
No 14
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=0.00032 Score=79.75 Aligned_cols=393 Identities=14% Similarity=0.184 Sum_probs=216.2
Q ss_pred HHHHHHHHHHHHHcChhhHHHHHHHHHHHHhcC---CCCCChhhHHHHHHHHHHhcccCchh-hhhcc-------cccH-
Q 004950 151 RKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTF---SADRNVEEVEAALTLLYALGESMSEE-AMRTG-------AGHL- 218 (722)
Q Consensus 151 Rk~l~~ll~~i~~l~~~l~l~~i~~~l~~~l~~---~~~~~W~~~EaaL~~l~~~gE~i~~~-~~~~~-------~~~l- 218 (722)
|+-.-|+.+-.+......+..++..-+++.+++ .++.+|...+.++|+.-+++-..... ...+. ..++
T Consensus 379 RR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~ 458 (960)
T KOG1992|consen 379 RRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFA 458 (960)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHH
Confidence 333446667655554555555555555555542 34578999999999999987543211 00011 1222
Q ss_pred HhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhhc--CCChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhh
Q 004950 219 SELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEH--TQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLK 296 (722)
Q Consensus 219 ~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~~--p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r 296 (722)
.++.+.|.+.++ .+||.++...+ +|.--|.++ |+++-..++.+. +++..+..-|-+-|++++-++---|.
T Consensus 459 ~~ilp~L~s~~v--n~~pilka~aI----Ky~~~FR~ql~~~~lm~~~p~li--~~L~a~s~vvhsYAA~aiEkil~vre 530 (960)
T KOG1992|consen 459 NQILPDLLSPNV--NEFPILKADAI----KYIYTFRNQLGKEHLMALLPRLI--RFLEAESRVVHSYAAIAIEKLLTVRE 530 (960)
T ss_pred HHhhHHhccCcc--ccccchhhccc----ceeeeecccCChHHHHHHHHHHH--HhccCcchHHHHHHHHHHHhcccccc
Confidence 234555554222 36787765444 333344444 577888888888 88887777788888888888765554
Q ss_pred c---------cchHHHHHHHHHhhhhhhhhccCCcccccCCCCchhhHHHHHHHHHHccCCCChhhhHHHHHHhHHHHHH
Q 004950 297 A---------KLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQ 367 (722)
Q Consensus 297 ~---------~L~~~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~L~Eaig~Lis~~~~~~e~~~~~l~~ll~pl~~ 367 (722)
+ .+.||+..+++.+-..++... + .+--|++-+|--+++. .++....+...++.-+-+
T Consensus 531 ~~~~~if~~~~iap~~~~ll~nLf~a~s~p~----------~-~EneylmKaImRii~i---~~~~i~p~~~~~l~~Lte 596 (960)
T KOG1992|consen 531 NSNAKIFGAEDIAPFVEILLTNLFKALSLPG----------K-AENEYLMKAIMRIISI---LQSAIIPHAPELLRQLTE 596 (960)
T ss_pred CccccccchhhcchHHHHHHHHHHHhccCCc----------c-cccHHHHHHHHHHHHh---CHHhhhhhhhHHHHHHHH
Confidence 4 457788888877766554221 2 2344999999999997 344454554444444444
Q ss_pred HHHHHHHhhhccCCchhhhHHHhHHHHHHHHHHhhhccCCCccCCCcchHHHHHHHHHHHHHHHHhcCCCChhHHhHHHH
Q 004950 368 QVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTS 447 (722)
Q Consensus 368 ~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~lakgf~~~~~~~~~~~~~~~~~~~~~vi~~~l~~~~~~~~Vre~~~~ 447 (722)
-+++...+. +++.-. |-....+|-+-+--...+ ...+...-.+.+|++..++. ....+..-.+.+
T Consensus 597 iv~~v~KNP---s~P~fn------HYLFEsi~~li~~t~~~~----~~~vs~~e~aL~p~fq~Il~--eDI~EfiPYvfQ 661 (960)
T KOG1992|consen 597 IVEEVSKNP---SNPQFN------HYLFESIGLLIRKTCKAN----PSAVSSLEEALFPVFQTILS--EDIQEFIPYVFQ 661 (960)
T ss_pred HHHHHhcCC---CCchhH------HHHHHHHHHHHHHHhccC----chHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 443333211 121111 223333333222111110 01133455567788888887 444566667788
Q ss_pred HHHHHHHhcCcccccchHHHHHHHHhcC--Ch-hhHHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHhhccCCCCCC
Q 004950 448 FIHRMVDTLGASVFPYLPKALEQLLAES--EP-KEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPS 524 (722)
Q Consensus 448 ~~~r~v~~lg~~v~p~lp~li~~ll~~~--~~-~~~~~fL~~~~qli~~f~~~~~~~l~~ll~~l~~~v~~~l~~~~~~~ 524 (722)
.++-++...+..+-+....++..+++.- +. ..+...+.++..++.+-.. ..+ -.+-+.++++..-.++...
T Consensus 662 lla~lve~~~~~ip~~~~~l~~~lLsp~lW~r~gNipalvrLl~aflk~g~~-~~~-~~~~l~~iLGifqkLiaSk---- 735 (960)
T KOG1992|consen 662 LLAVLVEHSSGTIPDSYSPLFPPLLSPNLWKRSGNIPALVRLLQAFLKTGSQ-IVE-AADKLSGILGIFQKLIASK---- 735 (960)
T ss_pred HHHHHHHhcCCCCchhHHHHHHHhcCHHHHhhcCCcHHHHHHHHHHHhcCch-hhc-ccccchhHHHHHHHHhcCc----
Confidence 8888888876644333344444444321 11 1222233333333322111 111 0111333333333333321
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeeecCCCCcCChHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhC
Q 004950 525 GPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDWCA 604 (722)
Q Consensus 525 ~p~~~~d~~r~~~~l~r~y~~fl~~i~~~~~~~vl~s~~~~~~l~~~l~~l~~~~~~~~d~~~~k~a~~~l~~li~~~~~ 604 (722)
. .| ...|.++++|+.+-.. ...+|+..+++..+++-.....-+--+|.++-|+..+....++
T Consensus 736 --a--~D---------h~GF~LLn~i~~~~~~-----~~~~py~k~i~~llf~RlqnskT~kf~k~~~vF~~~~~ik~~~ 797 (960)
T KOG1992|consen 736 --A--ND---------HHGFYLLNTIIESIPP-----NELAPYMKQIFGLLFQRLQNSKTEKFVKSFIVFFSLFTIKKGG 797 (960)
T ss_pred --c--cc---------hhHHHHHHHHHhcCCH-----hhhhHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhh
Confidence 1 12 4568889999876543 2335677778887776555666666778888888877766654
No 15
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=0.011 Score=67.32 Aligned_cols=334 Identities=15% Similarity=0.151 Sum_probs=199.0
Q ss_pred ChhhHHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHH--hh--c----C--
Q 004950 188 NVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFI--QE--H----T-- 257 (722)
Q Consensus 188 ~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~--~~--~----p-- 257 (722)
-|-. +++--.++.+++.++... .....++.++..++.. + ..||+|.--.+|...-.++-. .. + |
T Consensus 420 l~Vk-dTaAwtlgrI~d~l~e~~--~n~~~l~~~l~~l~~g-L--~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t 493 (859)
T KOG1241|consen 420 LWVK-DTAAWTLGRIADFLPEAI--INQELLQSKLSALLEG-L--NDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPAT 493 (859)
T ss_pred hhhc-chHHHHHHHHHhhchhhc--ccHhhhhHHHHHHHHH-h--hhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccc
Confidence 3665 999999999999998432 2335667777777762 3 378899999999888777422 21 2 1
Q ss_pred CChHHHHHHhccccCCCC-CCchhHHHHHHHHHHHHHHhhccc----hHHHHHHHHHhhhhhhhhccCCcccccCCCCch
Q 004950 258 QYIPVVLAAFLDERGIHH-PNVHVSRRASYLFMRVVKLLKAKL----VPFIENILQSLQDTIARFTSMNYASKELSGSED 332 (722)
Q Consensus 258 ~~L~~vL~~~l~~~Gl~~-~~~~V~~ra~ylf~r~~k~~r~~L----~~~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d 332 (722)
.+.+.+++.++...--.+ +....|+++-.++.-++|-|-+.. ......++..+...++... ++.+|
T Consensus 494 ~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~---------l~~~d 564 (859)
T KOG1241|consen 494 PFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQI---------LSLAD 564 (859)
T ss_pred hhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHh---------ccHhh
Confidence 256778888873222212 334588888889999998665444 3344555555555444111 12222
Q ss_pred -------hhHHHHHHHHHHccCCCChhhhHHHHHHhHHHHHHHHHHHHHhhhccCCc-------------h---------
Q 004950 333 -------GSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPE-------------E--------- 383 (722)
Q Consensus 333 -------~l~L~Eaig~Lis~~~~~~e~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~-------------~--------- 383 (722)
|-.|.-.++.++...+. +..+.-+.+|.-+++-++. -..+....+- +
T Consensus 565 r~q~~eLQs~Lc~~Lq~i~rk~~~---~~~~~~d~iM~lflri~~s-~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~ 640 (859)
T KOG1241|consen 565 RAQLNELQSLLCNTLQSIIRKVGS---DIREVSDQIMGLFLRIFES-KRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFK 640 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccc---cchhHHHHHHHHHHHHHcC-CccccchHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 33555566666665431 4445555555555555554 0000000100 0
Q ss_pred -----hh---hHHHhHHHHHHHHHHhhhccCCCccCCCcchHHHHHHHHHHHHHHHHhcCCCChhHHhHHHHHHHHHHHh
Q 004950 384 -----ST---AKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDT 455 (722)
Q Consensus 384 -----~~---~~~~~~~~~i~~l~~lakgf~~~~~~~~~~~~~~~~~~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~ 455 (722)
++ +.-......+..+|.+++.+.+ .+..+...++..+.++|+.-.-+..|.=.+.++|+.+.-.
T Consensus 641 pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~--------~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAla 712 (859)
T KOG1241|consen 641 PYLLMGLSNFQEYQVCAAAVGLVGDLARALED--------DILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALA 712 (859)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh--------hhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHH
Confidence 00 0000022333444444444432 2445677788999999998888899999999999999999
Q ss_pred cCcccccchHHHHHHHHhcC----Ch--hhHHHHHHHHHH-HHHHHhhhHHHHHH-----hhhHHHHHHHHhhccCCCCC
Q 004950 456 LGASVFPYLPKALEQLLAES----EP--KEMAGFLVLLNQ-LICKFNTLVHDILD-----EVFPAIAGRIFNIIPRDAFP 523 (722)
Q Consensus 456 lg~~v~p~lp~li~~ll~~~----~~--~~~~~fL~~~~q-li~~f~~~~~~~l~-----~ll~~l~~~v~~~l~~~~~~ 523 (722)
+|.++.||+..++..|-.-. +. .++.+|..=+-. ++.-|- .+.+.+. .++.|.+.++++++.+-.
T Consensus 713 Ig~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~-gi~qglk~~~~~~~~~p~v~~I~sfi~~I~-- 789 (859)
T KOG1241|consen 713 IGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYT-GIIQGLKTHADVMLVQPYVPHIISFIDRIA-- 789 (859)
T ss_pred HHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHH-HHHHHhhcccchhhhhcchHHHHHHHHHHh--
Confidence 99999999999998554422 22 356677633332 222222 2333332 355588899999998643
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCee
Q 004950 524 SGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSV 558 (722)
Q Consensus 524 ~~p~~~~d~~r~~~~l~r~y~~fl~~i~~~~~~~v 558 (722)
..+..+|. +.++-..++-.+.+....++
T Consensus 790 -~e~~~~~~------~~~~a~GlIgDL~~~fg~~~ 817 (859)
T KOG1241|consen 790 -AEPDVSEA------LHAAALGLIGDLATMFGKGV 817 (859)
T ss_pred -cCcccchH------HHHHHHHHHHHHHHHcccch
Confidence 12223343 78888999999888666544
No 16
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.20 E-value=0.018 Score=63.48 Aligned_cols=283 Identities=11% Similarity=0.114 Sum_probs=161.4
Q ss_pred CChhhHHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhh---c-C----C
Q 004950 187 RNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQE---H-T----Q 258 (722)
Q Consensus 187 ~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~---~-p----~ 258 (722)
+.-...|.+--|+|++++.++.. -+...+++-++...+. .-.+||++...+.|...-+.+-|.. | | .
T Consensus 420 ~~l~vk~ttAwc~g~iad~va~~--i~p~~Hl~~~vsa~li---Gl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~ 494 (858)
T COG5215 420 SCLWVKSTTAWCFGAIADHVAMI--ISPCGHLVLEVSASLI---GLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAK 494 (858)
T ss_pred ceeehhhHHHHHHHHHHHHHHHh--cCccccccHHHHHHHh---hhhccchHHhhhHHHHHhHHHhhhhhhccccchhHH
Confidence 34445788888999999887642 1123566666666553 2347899999999988888777764 2 2 3
Q ss_pred ChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhhhhhhccCCcccccCCCCchhhHHHH
Q 004950 259 YIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFE 338 (722)
Q Consensus 259 ~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L~~~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~L~E 338 (722)
+-+.+++.++...-.-.+....|.....++..++.-|...+.+.+-.+++...+-|....++.. ..+..+||+.+=|
T Consensus 495 fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~---q~l~~eD~~~~~e 571 (858)
T COG5215 495 FYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLG---QILATEDQLLVEE 571 (858)
T ss_pred HHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhh---hhhhhHHHHHHHH
Confidence 4566777776332222334445566666788888888877766666655555443322111111 1123444443333
Q ss_pred HHH-------HHHccCCCChhhhHHHHHHhHHHHHHHHHHHHHhhhccCCchhhhHHHhHHHHHHHHHH-hhhccCCCcc
Q 004950 339 AIG-------LLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINA-LSKGFNERLV 410 (722)
Q Consensus 339 aig-------~Lis~~~~~~e~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~-lakgf~~~~~ 410 (722)
--. .+|...+-+.|. --++++.-+++-+++. .+. ....++...|.++++ +.|+|.
T Consensus 572 lqSN~~~vl~aiir~~~~~ie~---v~D~lm~Lf~r~les~----~~t------~~~~dV~~aIsal~~sl~e~Fe---- 634 (858)
T COG5215 572 LQSNYIGVLEAIIRTRRRDIED---VEDQLMELFIRILEST----KPT------TAFGDVYTAISALSTSLEERFE---- 634 (858)
T ss_pred HHHHHHHHHHHHHHhcCCCccc---HHHHHHHHHHHHHhcc----CCc------hhhhHHHHHHHHHHHHHHHHHH----
Confidence 322 233322111111 1123333333333322 110 111113334444432 444554
Q ss_pred CCCcchHHHHHHHHHHHHHHHHhcCCCChhHHhHHHHHHHHHHHhcCcccccchHHHHHHHHhcCCh----hhH-HHHHH
Q 004950 411 TSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEP----KEM-AGFLV 485 (722)
Q Consensus 411 ~~~~~~~~~~~~~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~lg~~v~p~lp~li~~ll~~~~~----~~~-~~fL~ 485 (722)
+......|-+.+.++ ..+..|...+-.+.+++..++|.++.||-..++..|+...+. .++ .-.|+
T Consensus 635 --------~y~~~fiPyl~~aln--~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLS 704 (858)
T COG5215 635 --------QYASKFIPYLTRALN--CTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILS 704 (858)
T ss_pred --------HHHhhhhHHHHHHhc--chhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHH
Confidence 455567788888885 567788999999999999999999999999998888764422 121 23445
Q ss_pred HHHHHHHHHhhhHHHHHHh
Q 004950 486 LLNQLICKFNTLVHDILDE 504 (722)
Q Consensus 486 ~~~qli~~f~~~~~~~l~~ 504 (722)
..|-|..--+.++.+-|+.
T Consensus 705 vFgDIAlaiga~F~~YL~~ 723 (858)
T COG5215 705 VFGDIALAIGANFESYLDM 723 (858)
T ss_pred HHHHHHHHHhhhHHHHHHH
Confidence 5566666666555554443
No 17
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=0.0028 Score=76.66 Aligned_cols=184 Identities=14% Similarity=0.138 Sum_probs=126.0
Q ss_pred hHHHHHHHHHHHHHHHHHcccCcccccCCccCCCCChhHHHHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHhcCC
Q 004950 105 KEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFS 184 (722)
Q Consensus 105 ~~~~~~~l~~Ll~~li~km~yp~~~~~~~d~~~~~~~ede~~F~e~Rk~l~~ll~~i~~l~~~l~l~~i~~~l~~~l~~~ 184 (722)
.++..||+.+|++.+++ .||||+-. .|.-|.++-+.+..=....+-.+....++..+-+.
T Consensus 989 ~~kl~p~l~kLIPrLyR-Y~yDP~~~-------------------Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~l 1048 (1702)
T KOG0915|consen 989 GEKLEPYLKKLIPRLYR-YQYDPDKK-------------------VQDAMTSIWNALITDSKKVVDEYLNEILDELLVNL 1048 (1702)
T ss_pred HHhhhhHHHHhhHHHhh-hccCCcHH-------------------HHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhc
Confidence 45678999999999774 68887642 34445555444333224455556667777766555
Q ss_pred CCCChhhHHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhh---------
Q 004950 185 ADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQE--------- 255 (722)
Q Consensus 185 ~~~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~--------- 255 (722)
++.-|+..||+..++..+=.+=|.+.. ...+|++-..+.+ +-.+-|..||-++=-+..-.++-..+
T Consensus 1049 t~kewRVReasclAL~dLl~g~~~~~~---~e~lpelw~~~fR--vmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~ 1123 (1702)
T KOG0915|consen 1049 TSKEWRVREASCLALADLLQGRPFDQV---KEKLPELWEAAFR--VMDDIKESVREAADKAARALSKLCVRICDVTNGAK 1123 (1702)
T ss_pred cchhHHHHHHHHHHHHHHHcCCChHHH---HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccc
Confidence 567899999999999777666443322 3456777666665 34445667775544333333333221
Q ss_pred cCCChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhhh
Q 004950 256 HTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTI 314 (722)
Q Consensus 256 ~p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L~~~~~~il~~l~~ll 314 (722)
-.+.+..+|++++|+.++ +..+.||..|--.+..++|+..+.|.||++.++--+-++.
T Consensus 1124 ~~~~l~~iLPfLl~~gim-s~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~ 1181 (1702)
T KOG0915|consen 1124 GKEALDIILPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAY 1181 (1702)
T ss_pred HHHHHHHHHHHHhccCcc-cchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHc
Confidence 347899999999996555 7788899999888999999999999999998887776654
No 18
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.46 E-value=0.0096 Score=66.64 Aligned_cols=265 Identities=17% Similarity=0.205 Sum_probs=149.6
Q ss_pred ChhhHHHHHHHHHHhcccCchhh-hhcccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhhcCCChHHHHHH
Q 004950 188 NVEEVEAALTLLYALGESMSEEA-MRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAA 266 (722)
Q Consensus 188 ~W~~~EaaL~~l~~~gE~i~~~~-~~~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~~p~~L~~vL~~ 266 (722)
+...-|-|+-+|.-+.|-....- ..-.+.++.-|++.+++ +..++||++|--++-.+- .|+-.+++-+-.-+.-
T Consensus 141 d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~--f~~h~spkiRs~A~~cvN---q~i~~~~qal~~~iD~ 215 (885)
T KOG2023|consen 141 DYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQ--FFKHPSPKIRSHAVGCVN---QFIIIQTQALYVHIDK 215 (885)
T ss_pred cccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHH--HHhCCChhHHHHHHhhhh---heeecCcHHHHHHHHH
Confidence 34445666666666665433211 00113567778888876 677899999977766554 4555566554444444
Q ss_pred hccc-cCC-CCCCchhHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhhhhhhccCCcccccCCCCchhhHHHHHHHHHH
Q 004950 267 FLDE-RGI-HHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLI 344 (722)
Q Consensus 267 ~l~~-~Gl-~~~~~~V~~ra~ylf~r~~k~~r~~L~~~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~L~Eaig~Li 344 (722)
|+.. ..+ .+.++.||.-.|.+|..+...--..|.||+..|++.+-..-+ ..++ ---.||.-...
T Consensus 216 Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tq-------------d~dE-~VALEACEFwl 281 (885)
T KOG2023|consen 216 FLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQ-------------DVDE-NVALEACEFWL 281 (885)
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHcc-------------Ccch-hHHHHHHHHHH
Confidence 4310 012 358899999999999999998889999999999988743211 1221 14456777776
Q ss_pred ccCCC--ChhhhHHHHHHhHHHHHHHHHH------HHHhh----hccCCchhhhHHHhHHHHHHHHHHhh----------
Q 004950 345 GMEDV--PPEKQSDYLSSLLTPLCQQVQT------MLLDA----KMLNPEESTAKFANIQQIIMAINALS---------- 402 (722)
Q Consensus 345 s~~~~--~~e~~~~~l~~ll~pl~~~l~~------~~~~~----~~~~~~~~~~~~~~~~~~i~~l~~la---------- 402 (722)
+.... +.+.-..|+..+++-+++.+.= ++... ..++-++|..+ -+|-=..-|.-.
T Consensus 282 a~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkP---Rfhksk~~~~~~~~~~eDdddD 358 (885)
T KOG2023|consen 282 ALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKP---RFHKSKEHGNGEDADDEDDDDD 358 (885)
T ss_pred HHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccc---hhhhchhccCcccccccccccc
Confidence 65443 3344566777777666665531 11100 00000111110 001000000000
Q ss_pred -----hccCCCccCCCcch----HH-----HHHHHHHHHHHHHHhcCCCChhHHhHHHHHHHHHHHhcCcccccchHHHH
Q 004950 403 -----KGFNERLVTSSRPA----IG-----LMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKAL 468 (722)
Q Consensus 403 -----kgf~~~~~~~~~~~----~~-----~~~~~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~lg~~v~p~lp~li 468 (722)
.+|.+++-..=... .. ++...++|.+...|. ...-.|||+...+++-+.+-+-..+.|+||.++
T Consensus 359 e~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~--~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLi 436 (885)
T KOG2023|consen 359 EDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLS--SEEWKVREAGVLALGAIAEGCMQGFVPHLPELI 436 (885)
T ss_pred ccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcC--cchhhhhhhhHHHHHHHHHHHhhhcccchHHHH
Confidence 00000100000000 11 233335555555554 567899999999999999999999999999999
Q ss_pred HHHHhcCC
Q 004950 469 EQLLAESE 476 (722)
Q Consensus 469 ~~ll~~~~ 476 (722)
..|+...+
T Consensus 437 p~l~~~L~ 444 (885)
T KOG2023|consen 437 PFLLSLLD 444 (885)
T ss_pred HHHHHHhc
Confidence 99887653
No 19
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=97.42 E-value=0.0022 Score=69.74 Aligned_cols=196 Identities=16% Similarity=0.154 Sum_probs=115.8
Q ss_pred CccchhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHH-HHHHHcccCcccccCCccCCCCChhH-------HHHHHHHH
Q 004950 80 EVDTTFSIVQFLSGYVATMKSLSPLKEEQRLHAGQILE-VILTQIRYDPMYRNNLDVLDKIGIEE-------EDRMVEYR 151 (722)
Q Consensus 80 d~~~~~~~~~F~~~~l~~lk~~~~l~~~~~~~l~~Ll~-~li~km~yp~~~~~~~d~~~~~~~ed-------e~~F~e~R 151 (722)
.+..+..++.|++...+..+....+. ..+++.+|+. +++-.|.+.+++++ -|.|+ .+| -.++..-|
T Consensus 155 ~D~lv~~al~FL~~v~~~~~~~~lf~--~~~~L~~Iie~VI~Pnl~~~e~D~E--lfEdd--P~EYIrrd~e~sd~~TrR 228 (370)
T PF08506_consen 155 YDILVSKALQFLSSVAESPHHKNLFE--NKPHLQQIIEKVIFPNLCLREEDEE--LFEDD--PEEYIRRDLEGSDSDTRR 228 (370)
T ss_dssp GHHHHHHHHHHHHHHHTSHHHHTTT---SHHHHHHHHHHTHHHHHS--HHHHH--HHHHS--HHHHHHHHSCSS---SHH
T ss_pred ccHHHHHHHHHHHHHHcchhHHHHhC--CHHHHHHHHHHhccCccCCCHHHHH--HHccC--HHHHHHhhccccccCCcH
Confidence 44456677888876554322111111 2678888888 45667788766541 12111 111 12345577
Q ss_pred HHHHHHHHHHHHcChhhHHHHHHHHHHHHhc---CCCCCChhhHHHHHHHHHHhcccCchhhhh-cc-------cccHHh
Q 004950 152 KDLLVLLRSVGRVAPEVTQVFIRNSLANAVT---FSADRNVEEVEAALTLLYALGESMSEEAMR-TG-------AGHLSE 220 (722)
Q Consensus 152 k~l~~ll~~i~~l~~~l~l~~i~~~l~~~l~---~~~~~~W~~~EaaL~~l~~~gE~i~~~~~~-~~-------~~~l~~ 220 (722)
+--.++++.+..-.++.+...+...+++.++ +.++.+|+..++||+++.+++......... +. ..++.+
T Consensus 229 ~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~ 308 (370)
T PF08506_consen 229 RAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQ 308 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHH
Confidence 7788999988877777776666666666654 234578999999999999998865321100 00 011222
Q ss_pred -HHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhhcCCChHHHHHHhccccCCCCCCchhHHHHHHHH
Q 004950 221 -LVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLF 288 (722)
Q Consensus 221 -l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~~p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf 288 (722)
+++-|. ++ ...||.++--++..+..+..-+ .++.+..+++.++ +.+.+++.-|++-||+++
T Consensus 309 ~v~peL~-~~--~~~~piLka~aik~~~~Fr~~l--~~~~l~~~~~~l~--~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 309 HVLPELQ-PD--VNSHPILKADAIKFLYTFRNQL--PKEQLLQIFPLLV--NHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HTCHHHH--S--S-S-HHHHHHHHHHHHHHGGGS---HHHHHHHHHHHH--HHTTSS-HHHHHHHHHHH
T ss_pred HhHHHhc-cc--CCCCcchHHHHHHHHHHHHhhC--CHHHHHHHHHHHH--HHhCCCCcchhhhhhhhC
Confidence 122332 22 2368999988888877776654 3567888999999 788899988998888764
No 20
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.39 E-value=0.0053 Score=68.59 Aligned_cols=134 Identities=20% Similarity=0.367 Sum_probs=99.8
Q ss_pred HHHHHHHHHhcCCCCCChhhHHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHH
Q 004950 172 FIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMK 251 (722)
Q Consensus 172 ~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~ 251 (722)
++-..+.+... ..||...+++..++.|+++.+.- -...++.+++.+.. +..+.||.||-++.+++.+|.+
T Consensus 255 llpsll~~l~~----~kWrtK~aslellg~m~~~ap~q----Ls~~lp~iiP~lse--vl~DT~~evr~a~~~~l~~~~s 324 (569)
T KOG1242|consen 255 LLPSLLGSLLE----AKWRTKMASLELLGAMADCAPKQ----LSLCLPDLIPVLSE--VLWDTKPEVRKAGIETLLKFGS 324 (569)
T ss_pred hhhhhHHHHHH----HhhhhHHHHHHHHHHHHHhchHH----HHHHHhHhhHHHHH--HHccCCHHHHHHHHHHHHHHHH
Confidence 34455554433 37999999999999999998743 23457777787776 5677999999999999999999
Q ss_pred HHhh---------------cCC-ChHHHHHHhc-------------------cccCCCCCCchhHHHHHHHHHHHHHHh-
Q 004950 252 FIQE---------------HTQ-YIPVVLAAFL-------------------DERGIHHPNVHVSRRASYLFMRVVKLL- 295 (722)
Q Consensus 252 ~~~~---------------~p~-~L~~vL~~~l-------------------~~~Gl~~~~~~V~~ra~ylf~r~~k~~- 295 (722)
.+.. +|. +.+..+..+. =.||++..+...+..++..+-..|+..
T Consensus 325 vidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~Lve 404 (569)
T KOG1242|consen 325 VIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVE 404 (569)
T ss_pred hhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhc
Confidence 9873 454 4433333221 126777767677777888899999988
Q ss_pred -hccchHHHHHHHHHhhhhhh
Q 004950 296 -KAKLVPFIENILQSLQDTIA 315 (722)
Q Consensus 296 -r~~L~~~~~~il~~l~~ll~ 315 (722)
...+.||++.++..++..+.
T Consensus 405 Dp~~lapfl~~Llp~lk~~~~ 425 (569)
T KOG1242|consen 405 DPKDLAPFLPSLLPGLKENLD 425 (569)
T ss_pred CHHHHhhhHHHHhhHHHHHhc
Confidence 78889999999999987653
No 21
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=96.95 E-value=1.4 Score=52.11 Aligned_cols=458 Identities=13% Similarity=0.159 Sum_probs=240.3
Q ss_pred hHHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHH---H-HhhcCCChHHHHHH
Q 004950 191 EVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMK---F-IQEHTQYIPVVLAA 266 (722)
Q Consensus 191 ~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~---~-~~~~p~~L~~vL~~ 266 (722)
..-=|+++++.++-.++.+ .+.+++.-|+. +.++.+.+..-.|++..++.-+. . |..|...+-+++.-
T Consensus 190 VrKkai~~l~~la~~~~~~-------ly~~li~~Ll~-~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~ 261 (1233)
T KOG1824|consen 190 VRKKAITALGHLASSCNRD-------LYVELIEHLLK-GLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVAD 261 (1233)
T ss_pred HHHHHHHHHHHHHHhcCHH-------HHHHHHHHHHh-ccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHH
Confidence 3466899999999888754 45667776666 35554555555566665554433 2 45576666666666
Q ss_pred hccccCCCCCCchhHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhhhhhhccCCcccc---------cC---------C
Q 004950 267 FLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASK---------EL---------S 328 (722)
Q Consensus 267 ~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L~~~~~~il~~l~~ll~~~~~~~~~~~---------~~---------~ 328 (722)
++ .-+...+...|..+-.+|--|..-|...+.||.+.+++.+-+.++..+...+.++ +. .
T Consensus 262 y~--~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYs 339 (1233)
T KOG1824|consen 262 YC--NKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYS 339 (1233)
T ss_pred Hh--cccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccc
Confidence 66 3445567789999999999999999999999999999999888876554433321 00 0
Q ss_pred CCchhhHH-----HHHHHHHHccCCCChhhhHHHHHHhHHHHHHHHHHHHHhhhccCCchhhhHHHhHHHHHHHHHH---
Q 004950 329 GSEDGSHI-----FEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINA--- 400 (722)
Q Consensus 329 ~~~d~l~L-----~Eaig~Lis~~~~~~e~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~--- 400 (722)
..||..|. --++..+|++ -.|--....+.+.+-++.++..- |+.-+..-++-.+..+-.
T Consensus 340 DDeD~SWkVRRaAaKcl~a~IsS---R~E~L~~~~q~l~p~lI~RfkER----------EEnVk~dvf~~yi~ll~qt~~ 406 (1233)
T KOG1824|consen 340 DDEDMSWKVRRAAAKCLEAVISS---RLEMLPDFYQTLGPALISRFKER----------EENVKADVFHAYIALLKQTRP 406 (1233)
T ss_pred cccchhHHHHHHHHHHHHHHHhc---cHHHHHHHHHHhCHHHHHHHHHH----------hhhHHHHHHHHHHHHHHcCCC
Confidence 01111111 1122233332 23333344444444455444321 110111113333333332
Q ss_pred hhhccCCCccCC-Ccch-HHHHHHHHHHHHHHHHhcCCCChh--HHhHHHHHHHHHHHhcCcccccchHHHHHHHHhcCC
Q 004950 401 LSKGFNERLVTS-SRPA-IGLMFKQTLDVLLQILVVFPKVEP--LRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESE 476 (722)
Q Consensus 401 lakgf~~~~~~~-~~~~-~~~~~~~~~~vi~~~l~~~~~~~~--Vre~~~~~~~r~v~~lg~~v~p~lp~li~~ll~~~~ 476 (722)
.-+++.+...+. ..++ -..++.+-.+.+..++..--+... -|..+...++-++.+++....+++|.++..+.-...
T Consensus 407 ~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~ 486 (1233)
T KOG1824|consen 407 VIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLN 486 (1233)
T ss_pred CcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcC
Confidence 222222211111 1111 123444444444444443222333 444455566888888877777777777776655431
Q ss_pred ----h-hhHHHHHHHHHHHHHHHhhh-HHHHHHhhhHHHHHHHHhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004950 477 ----P-KEMAGFLVLLNQLICKFNTL-VHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVI 550 (722)
Q Consensus 477 ----~-~~~~~fL~~~~qli~~f~~~-~~~~l~~ll~~l~~~v~~~l~~~~~~~~p~~~~d~~r~~~~l~r~y~~fl~~i 550 (722)
. .--.+.|.|+..++...+.+ +.|.+..+.+|++.-|..-.-+ -..|. --+-..|...+.
T Consensus 487 DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyK--------isaEA----L~v~~~lvkvir-- 552 (1233)
T KOG1824|consen 487 DKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYK--------ISAEA----LLVCQQLVKVIR-- 552 (1233)
T ss_pred CccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHh--------hhHHH----HHHHHHHHHHhc--
Confidence 1 22345556665555444433 5555555666655444321111 11121 112222222221
Q ss_pred HhcCCCeeecCCCCcCChHHHHH-HHHHhhcCCCchHHHHHHHHHHHHHHHHhhCCCCCCCCchhHHHHHHHhh------
Q 004950 551 ATHDLSSVFLSPKSRGYLDPIMQ-LLLYTSCNHKDYLVRKACVQIFIRLIKDWCARPFVEEKVPGFQSFMIEAF------ 623 (722)
Q Consensus 551 ~~~~~~~vl~s~~~~~~l~~~l~-~l~~~~~~~~d~~~~k~a~~~l~~li~~~~~~~~~~~~~~gf~~fl~~~~------ 623 (722)
...+.. +-...|.+..++. ++...-..-.|-.++..|+..+..+|..+|+.-. .-+|..-..+.+++
T Consensus 553 -pl~~~~---~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~--~eL~~~L~il~eRl~nEiTR 626 (1233)
T KOG1824|consen 553 -PLQPPS---SFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLG--NELPRTLPILLERLGNEITR 626 (1233)
T ss_pred -ccCCCc---cCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhh--hhhHHHHHHHHHHHhchhHH
Confidence 112211 1112334555555 3333334668889999999999999988874211 12333333333322
Q ss_pred ---hhhhhhhcccCCCCCCCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHH---hccCCCCCCCHHHHHHHHHHhcc
Q 004950 624 ---AMNCCLYSVLDKSFEFGDANTLVLFGEIVLAQKVMYEKFGNDFLVHFV---TKGFPSAHCPPDLAEQYCQKLQG 694 (722)
Q Consensus 624 ---~~~~~~~~~~~~~F~~~Da~~~~~l~eia~~l~~l~~~~g~e~~~~l~---~~~lP~~~~~~~~~~~f~~~l~~ 694 (722)
+...|......-.+|+ -++--.++.|+++-+++...+.+.++++.+. ..| +...+.+..+.-+..+..
T Consensus 627 l~AvkAlt~Ia~S~l~i~l-~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~--~~~~~~~~~e~vL~el~~ 700 (1233)
T KOG1824|consen 627 LTAVKALTLIAMSPLDIDL-SPVLTEILPELASFLRKNQRALRLATLTALDKLVKNY--SDSIPAELLEAVLVELPP 700 (1233)
T ss_pred HHHHHHHHHHHhccceeeh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hccccHHHHHHHHHHhhh
Confidence 1111222111123442 3444478899999999999999988765544 344 334666666666655543
No 22
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=96.83 E-value=0.11 Score=58.00 Aligned_cols=274 Identities=18% Similarity=0.260 Sum_probs=142.4
Q ss_pred CCchhHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhhhhhhccCCcccccCCCCchhhHHHHHHHHHHccCCCChhhhH
Q 004950 276 PNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQS 355 (722)
Q Consensus 276 ~~~~V~~ra~ylf~r~~k~~r~~L~~~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~L~Eaig~Lis~~~~~~e~~~ 355 (722)
.|+.+ .|| ++|.+..++..+.|++..+++.+-.++..... +-..+.=--|+||++|.+|-..........
T Consensus 42 ENeyl-Mk~---iMRvl~~~~e~~~p~~~~il~~L~~il~~v~k------NPsnP~FnHylFEsi~~lir~~~~~~~~~v 111 (435)
T PF03378_consen 42 ENEYL-MKC---IMRVLSVLQEDILPIAVEILQHLTAILKEVSK------NPSNPRFNHYLFESIGALIRFVCEADPEAV 111 (435)
T ss_dssp C-HHH-HHH---HHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHT------S---HHHHHHHHHHHHHHHHHS-GGGHH--
T ss_pred cchHH-HHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh------CCCCcchhhhHHHHHHHHHHhccCCChhHH
Confidence 34433 566 89999999999999999999999888864431 100111234999999999997432222334
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhccCCchhhhHHHhHHHHHHHHHHhhhccCCCccCCCcchHHHHHHHHHHHHHHHHhcC
Q 004950 356 DYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVF 435 (722)
Q Consensus 356 ~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~lakgf~~~~~~~~~~~~~~~~~~~~~vi~~~l~~~ 435 (722)
..++..+-|.++. ++++... |-...+.+ ++..+-.... ++ ++.+.+.+.++.++.- ..|
T Consensus 112 ~~~E~~L~P~f~~---ILq~dV~----EF~PYvfQ---Ila~Lle~~~--~~--------~~p~~y~~L~~~Ll~p-~lW 170 (435)
T PF03378_consen 112 SQFEEALFPPFQE---ILQQDVQ----EFIPYVFQ---ILAQLLELRP--SS--------PLPDAYKQLFPPLLSP-ALW 170 (435)
T ss_dssp -HHHHHHHHHHHH---HHHTT-T----TTHHHHHH---HHHHHHHHSS------------S--TTTGGGHHHHTSG-GGG
T ss_pred HHHHHHHHHHHHH---HHHHHHH----HHHHHHHH---HHHHHHHcCC--CC--------CCcHHHHHHHHHHcCc-chh
Confidence 4555555555554 3543211 12334443 3333322211 00 1223344444544432 345
Q ss_pred CCChhHHhHHHHHHHHHHHhcCcccc--cchHHHHH---HHHhcCChhhHHHHHHHHHHHHHHHhhhHHHHHHhhhHHHH
Q 004950 436 PKVEPLRCKVTSFIHRMVDTLGASVF--PYLPKALE---QLLAESEPKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIA 510 (722)
Q Consensus 436 ~~~~~Vre~~~~~~~r~v~~lg~~v~--p~lp~li~---~ll~~~~~~~~~~fL~~~~qli~~f~~~~~~~l~~ll~~l~ 510 (722)
...+.|- +.-++++-++..-+..+. +.+..++. .|+++ ...+...| .+++.++..+..+ .++..++.++
T Consensus 171 e~~gniP-alvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~s-k~~D~~gF-~LL~~iv~~~p~~---~l~~yl~~I~ 244 (435)
T PF03378_consen 171 ERRGNIP-ALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIAS-KANDHYGF-DLLESIVENLPPE---ALEPYLKQIF 244 (435)
T ss_dssp GSTTTHH-HHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT--TTCHHHHH-HHHHHHHHHS-HH---HHGGGHHHHH
T ss_pred ccCCCcC-cHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCC-CCcchHHH-HHHHHHHHHCCHH---HHHHHHHHHH
Confidence 5444442 233334333333333332 55555555 34432 33454444 6889999888764 2334444455
Q ss_pred HHHHhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-cCCCeeecC--CCCcCChHHHHHH-HHHhhcCCCchH
Q 004950 511 GRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIAT-HDLSSVFLS--PKSRGYLDPIMQL-LLYTSCNHKDYL 586 (722)
Q Consensus 511 ~~v~~~l~~~~~~~~p~~~~d~~r~~~~l~r~y~~fl~~i~~-~~~~~vl~s--~~~~~~l~~~l~~-l~~~~~~~~d~~ 586 (722)
.-++.-|+.. -|+. ..|.+..|+.-++. .|+..++-. .-..+.|..++.. |+-.......+.
T Consensus 245 ~lll~RLq~s--------kT~k------f~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~ 310 (435)
T PF03378_consen 245 TLLLTRLQSS--------KTEK------FVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPI 310 (435)
T ss_dssp HHHHHHHHHC----------HH------HHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHH
T ss_pred HHHHHHHhhC--------CcHH------HHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcc
Confidence 5555555532 1232 67777777665543 344333222 2223456667764 344445667788
Q ss_pred HHHHHHHHHHHHHH
Q 004950 587 VRKACVQIFIRLIK 600 (722)
Q Consensus 587 ~~k~a~~~l~~li~ 600 (722)
.+|.|+-.+++++.
T Consensus 311 erKi~~vGltkLL~ 324 (435)
T PF03378_consen 311 ERKICAVGLTKLLC 324 (435)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHh
Confidence 99999999999993
No 23
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.74 E-value=2.2 Score=51.63 Aligned_cols=214 Identities=14% Similarity=0.156 Sum_probs=120.9
Q ss_pred HHHHHHHHHhcCCCChhHHhHHHHHHHHHHHhcCcccccchHHHHHHHHhcC---Ch-hh--HHHHHHHHH--HHHHHHh
Q 004950 424 TLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAES---EP-KE--MAGFLVLLN--QLICKFN 495 (722)
Q Consensus 424 ~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~lg~~v~p~lp~li~~ll~~~---~~-~~--~~~fL~~~~--qli~~f~ 495 (722)
+.+.+...++ .....++-..+.++++++.+++.+..-++|.+|.-++-.. +. .+ =-+.|.+++ +..+.++
T Consensus 698 I~n~L~ds~q--s~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g 775 (1176)
T KOG1248|consen 698 IFNSLLDSFQ--SSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDG 775 (1176)
T ss_pred HHHHHHHHHh--ccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhccc
Confidence 4444444443 3446777778999999999999888778888777555433 21 22 234457777 7777777
Q ss_pred hhH-HHHHHhhhHHHHHHHHhhccCCCCCCCCCCCCHHHHHHHHHHHHH-HHHHHHHHhcCCCeeecCCCCcCChHHHHH
Q 004950 496 TLV-HDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTL-YTFLHVIATHDLSSVFLSPKSRGYLDPIMQ 573 (722)
Q Consensus 496 ~~~-~~~l~~ll~~l~~~v~~~l~~~~~~~~p~~~~d~~r~~~~l~r~y-~~fl~~i~~~~~~~vl~s~~~~~~l~~~l~ 573 (722)
++= ...++.++. .+...+-. |.. ...++ +--+.+++...- .+ ++ -+.++.+++
T Consensus 776 ~e~~~~~lnefl~----~Isagl~g-----------d~~-----~~~as~Ivai~~il~e~~-~~-ld---~~~l~~li~ 830 (1176)
T KOG1248|consen 776 NEPASAILNEFLS----IISAGLVG-----------DST-----RVVASDIVAITHILQEFK-NI-LD---DETLEKLIS 830 (1176)
T ss_pred ccchHHHHHHHHH----HHHhhhcc-----------cHH-----HHHHHHHHHHHHHHHHHh-cc-cc---HHHHHHHHH
Confidence 662 344444333 33332221 111 22222 333334443321 12 22 225777777
Q ss_pred HHHHhhcCCCchHHHHHHHHHHHHHHHHhhCCCCCCCCchhHHHHHHHhhhhhhhhhcccCCCCCCCchhHHHHHHHHHH
Q 004950 574 LLLYTSCNHKDYLVRKACVQIFIRLIKDWCARPFVEEKVPGFQSFMIEAFAMNCCLYSVLDKSFEFGDANTLVLFGEIVL 653 (722)
Q Consensus 574 ~l~~~~~~~~d~~~~k~a~~~l~~li~~~~~~~~~~~~~~gf~~fl~~~~~~~~~~~~~~~~~F~~~Da~~~~~l~eia~ 653 (722)
.++- .+...-+...|+|+.|++.++..+.. ..+..+.+- ++|.+ +.+ ..-..+.+--.+-.
T Consensus 831 ~V~~-~L~s~sreI~kaAI~fikvlv~~~pe-----~~l~~~~~~----LL~sl-l~l--------s~d~k~~~r~Kvr~ 891 (1176)
T KOG1248|consen 831 MVCL-YLASNSREIAKAAIGFIKVLVYKFPE-----ECLSPHLEE----LLPSL-LAL--------SHDHKIKVRKKVRL 891 (1176)
T ss_pred HHHH-HHhcCCHHHHHHHHHHHHHHHHcCCH-----HHHhhhHHH----HHHHH-HHH--------HHhhhHHHHHHHHH
Confidence 6664 35668889999999999999855421 111222222 23321 221 22233455567889
Q ss_pred HHHHHHHHhhhHHHHHHHhccCCCCCCCHHHHHHHHHHhc
Q 004950 654 AQKVMYEKFGNDFLVHFVTKGFPSAHCPPDLAEQYCQKLQ 693 (722)
Q Consensus 654 ~l~~l~~~~g~e~~~~l~~~~lP~~~~~~~~~~~f~~~l~ 693 (722)
+++.|..++|-+.+. .++| ++-.+.++++.
T Consensus 892 LlekLirkfg~~eLe----~~~p------ee~~klL~nIR 921 (1176)
T KOG1248|consen 892 LLEKLIRKFGAEELE----SFLP------EEDMKLLTNIR 921 (1176)
T ss_pred HHHHHHHHhCHHHHH----hhCH------HHHHHHHHHHH
Confidence 999999999987663 3565 55666666663
No 24
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.63 E-value=0.43 Score=54.59 Aligned_cols=354 Identities=16% Similarity=0.200 Sum_probs=185.3
Q ss_pred ChhhHHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHh------hcCCChH
Q 004950 188 NVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQ------EHTQYIP 261 (722)
Q Consensus 188 ~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~------~~p~~L~ 261 (722)
+=+.++.+..++..+-+...+. ...++..+.|.. -..+++|.||..++..++|+.+=-. .+++.++
T Consensus 51 ~~e~v~~~~~iL~~~l~~~~~~------~l~~~~~~~L~~--gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~ 122 (503)
T PF10508_consen 51 NREQVELICDILKRLLSALSPD------SLLPQYQPFLQR--GLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLP 122 (503)
T ss_pred ChHHHHHHHHHHHHHHhccCHH------HHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHH
Confidence 4567888888888777776654 236666666665 2456899999999999999853211 2344444
Q ss_pred HHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhhccchHHHHHH-----HHHhhhhhhhhccCCcccccCCCCchhhHH
Q 004950 262 VVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENI-----LQSLQDTIARFTSMNYASKELSGSEDGSHI 336 (722)
Q Consensus 262 ~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L~~~~~~i-----l~~l~~ll~~~~~~~~~~~~~~~~~d~l~L 336 (722)
. ++ .++.+++..|...|.-++.++++. + +..+.+ +..+.+++... +..-++++
T Consensus 123 ~----i~--~~L~~~d~~Va~~A~~~L~~l~~~-~----~~~~~l~~~~~~~~L~~l~~~~-----------~~~vR~Rv 180 (503)
T PF10508_consen 123 L----II--QCLRDPDLSVAKAAIKALKKLASH-P----EGLEQLFDSNLLSKLKSLMSQS-----------SDIVRCRV 180 (503)
T ss_pred H----HH--HHHcCCcHHHHHHHHHHHHHHhCC-c----hhHHHHhCcchHHHHHHHHhcc-----------CHHHHHHH
Confidence 4 44 455578899999999889988862 2 233333 55565555310 12348899
Q ss_pred HHHHHHHHccCCCChhhhHHHHHHhHHHHHHHHHHHHHhhhccCCchhhhHHHhHHHHHHHHHHhhhccCCCccCCCcch
Q 004950 337 FEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPA 416 (722)
Q Consensus 337 ~Eaig~Lis~~~~~~e~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~lakgf~~~~~~~~~~~ 416 (722)
||.+..+.+. +++. .+++.. +.++..+.+.+. + +|.-. -...+..++.+++ .+.
T Consensus 181 ~el~v~i~~~---S~~~-~~~~~~--sgll~~ll~eL~------~-dDiLv---qlnalell~~La~--~~~-------- 234 (503)
T PF10508_consen 181 YELLVEIASH---SPEA-AEAVVN--SGLLDLLLKELD------S-DDILV---QLNALELLSELAE--TPH-------- 234 (503)
T ss_pred HHHHHHHHhc---CHHH-HHHHHh--ccHHHHHHHHhc------C-ccHHH---HHHHHHHHHHHHc--Chh--------
Confidence 9999999876 3322 222222 123333333331 1 12111 1234555565554 111
Q ss_pred HHHHHH--HHHHHHHHHHhcCCCCh----hHHhHHHHHHHHHHHhcCcccccchHHHHHHHHhcC---ChhhHHHHHHHH
Q 004950 417 IGLMFK--QTLDVLLQILVVFPKVE----PLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAES---EPKEMAGFLVLL 487 (722)
Q Consensus 417 ~~~~~~--~~~~vi~~~l~~~~~~~----~Vre~~~~~~~r~v~~lg~~v~p~lp~li~~ll~~~---~~~~~~~fL~~~ 487 (722)
..+++. .+.+.+...+..-..++ ...-....++..+...-...+.-..|.++..+.... +.......+.-+
T Consensus 235 g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtl 314 (503)
T PF10508_consen 235 GLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTL 314 (503)
T ss_pred HHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Confidence 112221 14444555544332222 122233355566665544556656678877766433 344555555556
Q ss_pred HHHHHHHhhhHHHHH----HhhhHHHHHHHHhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeeecCCC
Q 004950 488 NQLICKFNTLVHDIL----DEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPK 563 (722)
Q Consensus 488 ~qli~~f~~~~~~~l----~~ll~~l~~~v~~~l~~~~~~~~p~~~~d~~r~~~~l~r~y~~fl~~i~~~~~~~vl~s~~ 563 (722)
|++...-. -...| ..-+..++.+++...... + +| ++-..++-+..++..+.. .
T Consensus 315 g~igst~~--G~~~L~~~~~~~~~~~l~~~~~~~~~~-----~---~~-------lk~r~l~al~~il~~~~~------~ 371 (503)
T PF10508_consen 315 GQIGSTVE--GKQLLLQKQGPAMKHVLKAIGDAIKSG-----S---TE-------LKLRALHALASILTSGTD------R 371 (503)
T ss_pred HHHhCCHH--HHHHHHhhcchHHHHHHHHHHHHhcCC-----c---hH-------HHHHHHHHHHHHHhcCCC------C
Confidence 65543221 22222 112223344444444431 1 12 666777777777654432 0
Q ss_pred CcCChHHHHHHHHHh------------hcCCCchHHHHHHHHHHHHHHHH-hhCCCCCCCCchhHHHHHHHh
Q 004950 564 SRGYLDPIMQLLLYT------------SCNHKDYLVRKACVQIFIRLIKD-WCARPFVEEKVPGFQSFMIEA 622 (722)
Q Consensus 564 ~~~~l~~~l~~l~~~------------~~~~~d~~~~k~a~~~l~~li~~-~~~~~~~~~~~~gf~~fl~~~ 622 (722)
....+..+...|.+. .+..|=|..+-+++.+|..+..+ ||... .-.-|||-+|+.++
T Consensus 372 ~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~--i~~~~gfie~lldr 441 (503)
T PF10508_consen 372 QDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQRE--ICSSPGFIEYLLDR 441 (503)
T ss_pred chHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHH--HHhCccHHhhhcCC
Confidence 000111222232221 12223367777899999888754 55321 11236888888775
No 25
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.59 E-value=1.8 Score=48.46 Aligned_cols=342 Identities=14% Similarity=0.152 Sum_probs=187.5
Q ss_pred HHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHcccCcccccCCccCCCCChhH
Q 004950 64 LLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLSPLKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEE 143 (722)
Q Consensus 64 ~l~~~~plvL~~~~~~d~~~~~~~~~F~~~~l~~lk~~~~l~~~~~~~l~~Ll~~li~km~yp~~~~~~~d~~~~~~~ed 143 (722)
.+..++|-++.|+++.|.-+.-.+++-.|...-..|. ....|+..+.+++++-+. |.|... ..+.|
T Consensus 81 Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~------~v~~~Fn~iFdvL~klsa-Dsd~~V------~~~ae- 146 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKG------EVLVYFNEIFDVLCKLSA-DSDQNV------RGGAE- 146 (675)
T ss_pred HHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhcc------CcccchHHHHHHHHHHhc-CCcccc------ccHHH-
Confidence 6789999999999999888887899999988755443 334556666666655443 222210 01111
Q ss_pred HHHHHHHHHHHHHHHHHHHHc-ChhhHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhcccCchhhhhcccccHHhHH
Q 004950 144 EDRMVEYRKDLLVLLRSVGRV-APEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELV 222 (722)
Q Consensus 144 e~~F~e~Rk~l~~ll~~i~~l-~~~l~l~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~ 222 (722)
--...+|++. .= .++.-++..-+++..-+.--+...=+-+=-=|+.+ .++|+-++ -+.+++++
T Consensus 147 --LLdRLikdIV-------te~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~L----ds~P~~~m---~~yl~~~l 210 (675)
T KOG0212|consen 147 --LLDRLIKDIV-------TESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVL----DSVPDLEM---ISYLPSLL 210 (675)
T ss_pred --HHHHHHHHhc-------cccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH----hcCCcHHH---HhcchHHH
Confidence 1111222221 11 11222222233333333210000000000012222 23333221 25677777
Q ss_pred HHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhhcCCC--hHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhhccch
Q 004950 223 PMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQY--IPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLV 300 (722)
Q Consensus 223 ~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~~p~~--L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L~ 300 (722)
+.|.+ +..++|+.||..+=-+++.+-.=+...|.. -+..++.+. .-++.+++..+..|-.-+.-|++--+..+.
T Consensus 211 dGLf~--~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv--~~l~ss~~~iq~~al~Wi~efV~i~g~~~l 286 (675)
T KOG0212|consen 211 DGLFN--MLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLV--PHLQSSEPEIQLKALTWIQEFVKIPGRDLL 286 (675)
T ss_pred HHHHH--HhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhcc--ccccCCcHHHHHHHHHHHHHHhcCCCcchh
Confidence 77776 466788899976666666666666667765 455666777 566788899998886669999999999999
Q ss_pred HHHHHHHHHhhhhhhhhccCCcccccCCCCchhhHHHHHHHHHHccCCCChhhhHHHHHHhHHHHHHHHHHHHHhhhccC
Q 004950 301 PFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLN 380 (722)
Q Consensus 301 ~~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~L~Eaig~Lis~~~~~~e~~~~~l~~ll~pl~~~l~~~~~~~~~~~ 380 (722)
+|++.++..+-+.+.-.. .+ ...-+=+..-|.+.+..+.+. .+.+ .=..++++-+.+.+..
T Consensus 287 ~~~s~il~~iLpc~s~~e-------~~---~i~~~a~~~n~~l~~l~s~~~-~~~~---id~~~ii~vl~~~l~~----- 347 (675)
T KOG0212|consen 287 LYLSGILTAILPCLSDTE-------EM---SIKEYAQMVNGLLLKLVSSER-LKEE---IDYGSIIEVLTKYLSD----- 347 (675)
T ss_pred hhhhhhhhhcccCCCCCc-------cc---cHHHHHHHHHHHHHHHHhhhh-hccc---cchHHHHHHHHHHhhc-----
Confidence 999999999977664221 00 112233334444555432111 1111 1122444444443321
Q ss_pred CchhhhHHHhHHHHHHHHHHhhhccCCCccCCCcchHHHHHHHHHHHHHHHHhcCCCChhHHhHHHHHHHHHHHhcCc-c
Q 004950 381 PEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGA-S 459 (722)
Q Consensus 381 ~~~~~~~~~~~~~~i~~l~~lakgf~~~~~~~~~~~~~~~~~~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~lg~-~ 459 (722)
+.++ ++ ..++.|+..+-.-+++ .+...-.++.+.++..+. +.+.+|...+-+.++.++..-.. .
T Consensus 348 ~~~~-tr----i~~L~Wi~~l~~~~p~--------ql~~h~~~if~tLL~tLs--d~sd~vvl~~L~lla~i~~s~~~~~ 412 (675)
T KOG0212|consen 348 DREE-TR----IAVLNWIILLYHKAPG--------QLLVHNDSIFLTLLKTLS--DRSDEVVLLALSLLASICSSSNSPN 412 (675)
T ss_pred chHH-HH----HHHHHHHHHHHhhCcc--------hhhhhccHHHHHHHHhhc--CchhHHHHHHHHHHHHHhcCccccc
Confidence 1111 22 3456666666444432 123334456666777676 67788989898888888777533 4
Q ss_pred cccchHHHHHHHHh
Q 004950 460 VFPYLPKALEQLLA 473 (722)
Q Consensus 460 v~p~lp~li~~ll~ 473 (722)
..+++-.+++.+..
T Consensus 413 ~~~fl~sLL~~f~e 426 (675)
T KOG0212|consen 413 LRKFLLSLLEMFKE 426 (675)
T ss_pred HHHHHHHHHHHHhh
Confidence 45555555554443
No 26
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=2.7 Score=48.50 Aligned_cols=235 Identities=11% Similarity=0.055 Sum_probs=128.4
Q ss_pred HHHHHHHHhh-hc------cCCccchhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHcccCcccccCCccCCC
Q 004950 66 NEVLPSVFYV-MQ------NCEVDTTFSIVQFLSGYVATMKSLSPLKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDK 138 (722)
Q Consensus 66 ~~~~plvL~~-~~------~~d~~~~~~~~~F~~~~l~~lk~~~~l~~~~~~~l~~Ll~~li~km~yp~~~~~~~d~~~~ 138 (722)
..++|.+|+- +. ....=.+..++.|+-.+++..-+.++...-..|||.=++..++=-+--+.+.+. ++|. +
T Consensus 290 ~t~vp~il~tffkqie~wgqgqLWlsd~~LYfi~~Fve~cv~~d~tw~l~ePhlq~ii~~vIfPllc~see~e-ElfE-n 367 (970)
T COG5656 290 MTRVPMILATFFKQIEEWGQGQLWLSDIELYFIDFFVELCVDADQTWRLMEPHLQYIISGVIFPLLCLSEEEE-ELFE-N 367 (970)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCeecchHHHHHHHHHHHHHhhhHhhHhhhccHHHHHHHhhhhhhcCCChhhH-HHHh-c
Confidence 3577777652 21 112112336677777777666444434445556665555444433322222211 1231 1
Q ss_pred CChhHH-----HHHHH-HHHHHHHHH--HHHHHcChhhHHHHHHHHHHHHhcC----CCC-CChhhHHHHHHHHHHhccc
Q 004950 139 IGIEEE-----DRMVE-YRKDLLVLL--RSVGRVAPEVTQVFIRNSLANAVTF----SAD-RNVEEVEAALTLLYALGES 205 (722)
Q Consensus 139 ~~~ede-----~~F~e-~Rk~l~~ll--~~i~~l~~~l~l~~i~~~l~~~l~~----~~~-~~W~~~EaaL~~l~~~gE~ 205 (722)
|.++- +-|.+ +|-+++.+. -.+.+-.++..++-+-+.+.+++.+ +++ .+-+..|-||+.+.++-.-
T Consensus 368 -Dp~eyirry~df~d~g~spdlaal~fl~~~~sKrke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~ 446 (970)
T COG5656 368 -DPDEYIRRYYDFFDNGLSPDLAALFFLIISKSKRKEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSF 446 (970)
T ss_pred -CHHHHHHHhcchhcCCCChhHHHHHHHHHHhcccchhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHH
Confidence 11111 11222 456666542 2344556666555455555555532 222 3467899999999999886
Q ss_pred CchhhhhcccccHHhHHHHHHhCC-CC--CCChhHHHHHHHHHHHhhHHHHhhcCCChHHHHHHhccccCCCCCCchhHH
Q 004950 206 MSEEAMRTGAGHLSELVPMLLQTK-LP--CHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSR 282 (722)
Q Consensus 206 i~~~~~~~~~~~l~~l~~~l~~~~-i~--~~~hp~V~~~~~e~i~RY~~~~~~~p~~L~~vL~~~l~~~Gl~~~~~~V~~ 282 (722)
+... .++..+|...+-.. +| ..+-=-.+..+||++.||++=|.... .+..+.+.-. ..+.|++.-|+-
T Consensus 447 itk~------sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfkd~~-ill~aye~t~--ncl~nn~lpv~i 517 (970)
T COG5656 447 ITKM------SPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDNG-ILLEAYENTH--NCLKNNHLPVMI 517 (970)
T ss_pred hccC------chHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHhcccch-HHHHHHHHHH--HHHhcCCcchhh
Confidence 5532 34455554332211 11 11112367788999999977665543 3444555555 566677777999
Q ss_pred HHHHHHHHHHHHhhccc--hHHHHHHHHHhhh
Q 004950 283 RASYLFMRVVKLLKAKL--VPFIENILQSLQD 312 (722)
Q Consensus 283 ra~ylf~r~~k~~r~~L--~~~~~~il~~l~~ 312 (722)
-|+-+++.|+.+-..|. ..|++...+.+-.
T Consensus 518 eAalAlq~fi~~~q~h~k~sahVp~tmekLLs 549 (970)
T COG5656 518 EAALALQFFIFNEQSHEKFSAHVPETMEKLLS 549 (970)
T ss_pred hHHHHHHHHHhchhhhHHHHhhhhHHHHHHHH
Confidence 99999999998765443 4677777666644
No 27
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.38 E-value=2.3 Score=47.50 Aligned_cols=282 Identities=16% Similarity=0.266 Sum_probs=155.2
Q ss_pred hHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhhhhhhcc-CCcc-------cccC----
Q 004950 260 IPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTS-MNYA-------SKEL---- 327 (722)
Q Consensus 260 L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L~~~~~~il~~l~~ll~~~~~-~~~~-------~~~~---- 327 (722)
+||+++.| ++++.+||.-||-.+..++|-||....+|.+.|...+..+..-.-. ...+ -|+.
T Consensus 86 v~Pv~~cf------~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~ 159 (675)
T KOG0212|consen 86 VPPVLNCF------SDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTES 159 (675)
T ss_pred hHHHHHhc------cCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhcccc
Confidence 56666555 4688999999999999999999999999999999998776431110 0000 0010
Q ss_pred -------------------CCCchhhHHHHHHHHHHccCCCChhhhHHHHHHhHHHHHHHHHHHHHhhhccCCchhhhHH
Q 004950 328 -------------------SGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKF 388 (722)
Q Consensus 328 -------------------~~~~d~l~L~Eaig~Lis~~~~~~e~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~ 388 (722)
..+..+.++.+-+-.|-+. |+=+-..|+..++.-+++-+...- ++...+
T Consensus 160 ~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~---P~~~m~~yl~~~ldGLf~~LsD~s---------~eVr~~ 227 (675)
T KOG0212|consen 160 ASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSV---PDLEMISYLPSLLDGLFNMLSDSS---------DEVRTL 227 (675)
T ss_pred ccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC---CcHHHHhcchHHHHHHHHHhcCCc---------HHHHHH
Confidence 1233356777777776665 565677888888877776653211 111111
Q ss_pred Hh--HHHHHHHHHHhhhccCCCccCCCcchHHHHHHHHHHHHHHHHhcCCCChhHHhHHHHHHHHHHHhcCcccccchHH
Q 004950 389 AN--IQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPK 466 (722)
Q Consensus 389 ~~--~~~~i~~l~~lakgf~~~~~~~~~~~~~~~~~~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~lg~~v~p~lp~ 466 (722)
.. +...+..|.+ ..... =+.++.+++..=+. ..++.++..+...+.-+|.+.|+.++|+++.
T Consensus 228 ~~t~l~~fL~eI~s------~P~s~--------d~~~~i~vlv~~l~--ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~ 291 (675)
T KOG0212|consen 228 TDTLLSEFLAEIRS------SPSSM--------DYDDMINVLVPHLQ--SSEPEIQLKALTWIQEFVKIPGRDLLLYLSG 291 (675)
T ss_pred HHHHHHHHHHHHhc------Ccccc--------Ccccchhhcccccc--CCcHHHHHHHHHHHHHHhcCCCcchhhhhhh
Confidence 11 2333333331 11000 11122333322222 4567888889888899999999999999999
Q ss_pred HHHHHHhcCCh-hhH--HHHHHHHH-HHHHHHhhhH-HHHHHhhhHHHHHHHHhhccCCCCCCCCCCCCHHHHHHHHHHH
Q 004950 467 ALEQLLAESEP-KEM--AGFLVLLN-QLICKFNTLV-HDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQR 541 (722)
Q Consensus 467 li~~ll~~~~~-~~~--~~fL~~~~-qli~~f~~~~-~~~l~~ll~~l~~~v~~~l~~~~~~~~p~~~~d~~r~~~~l~r 541 (722)
++..++..... .++ .++-..+| ++...+..+. .+-++ +.++++-+-..+.. +..+.+=
T Consensus 292 il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id--~~~ii~vl~~~l~~---------------~~~~tri 354 (675)
T KOG0212|consen 292 ILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEID--YGSIIEVLTKYLSD---------------DREETRI 354 (675)
T ss_pred hhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccc--hHHHHHHHHHHhhc---------------chHHHHH
Confidence 99999876643 232 11112222 2222222110 00000 11121222222221 1223667
Q ss_pred HHHHHHHHHHhcCCCeeecCCCCcCChHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 004950 542 TLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLI 599 (722)
Q Consensus 542 ~y~~fl~~i~~~~~~~vl~s~~~~~~l~~~l~~l~~~~~~~~d~~~~k~a~~~l~~li 599 (722)
+-++-+..+.++.+..++.+..+ ++.+++....+.+|.. .-.++.++..+.
T Consensus 355 ~~L~Wi~~l~~~~p~ql~~h~~~------if~tLL~tLsd~sd~v-vl~~L~lla~i~ 405 (675)
T KOG0212|consen 355 AVLNWIILLYHKAPGQLLVHNDS------IFLTLLKTLSDRSDEV-VLLALSLLASIC 405 (675)
T ss_pred HHHHHHHHHHhhCcchhhhhccH------HHHHHHHhhcCchhHH-HHHHHHHHHHHh
Confidence 77888888888888888775432 3444443223333333 334455555544
No 28
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=96.22 E-value=3.2 Score=47.55 Aligned_cols=363 Identities=17% Similarity=0.214 Sum_probs=184.7
Q ss_pred HHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhC
Q 004950 149 EYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQT 228 (722)
Q Consensus 149 e~Rk~l~~ll~~i~~l~~~l~l~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~ 228 (722)
..||...-.+-.++..+|+.+-....+.+.+.+.. .++..+-+|+.+++.+ +. ++... ...++.++..|.+
T Consensus 129 ~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d---~~~~V~~~a~~~l~~i-~~-~~~~~---~~~~~~~~~~L~~- 199 (526)
T PF01602_consen 129 YVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSD---KDPSVVSAALSLLSEI-KC-NDDSY---KSLIPKLIRILCQ- 199 (526)
T ss_dssp HHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTH---SSHHHHHHHHHHHHHH-HC-THHHH---TTHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccC---CcchhHHHHHHHHHHH-cc-Ccchh---hhhHHHHHHHhhh-
Confidence 37998888888888889998755344555556543 5688899999999888 22 22110 1456666666554
Q ss_pred CCCCCChhHHHHHHHHHHHhhHHHHhhcC---CChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhhccchHHHHH
Q 004950 229 KLPCHSNRLVALVYLETVTRYMKFIQEHT---QYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIEN 305 (722)
Q Consensus 229 ~i~~~~hp~V~~~~~e~i~RY~~~~~~~p---~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L~~~~~~ 305 (722)
+...+.|-++...+.++.+|...-...+ ..++.+++.+- +.++.|..-|..++..+...-. .+..
T Consensus 200 -~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~------s~~~~V~~e~~~~i~~l~~~~~-----~~~~ 267 (526)
T PF01602_consen 200 -LLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQ------SSSPSVVYEAIRLIIKLSPSPE-----LLQK 267 (526)
T ss_dssp -HHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHSSSHH-----HHHH
T ss_pred -cccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhh------ccccHHHHHHHHHHHHhhcchH-----HHHh
Confidence 1134667899999999999988755544 34444444333 5666777666555553322111 3445
Q ss_pred HHHHhhhhhhhhccCCcccccCCCCchhhHHHHHHHHHHccC----------------CCChhhhHHHHHH---hHH---
Q 004950 306 ILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGME----------------DVPPEKQSDYLSS---LLT--- 363 (722)
Q Consensus 306 il~~l~~ll~~~~~~~~~~~~~~~~~d~l~L~Eaig~Lis~~----------------~~~~e~~~~~l~~---ll~--- 363 (722)
+++.+..++. .. .++-+....+++..++... +-+..-+...++. +++
T Consensus 268 ~~~~L~~lL~-s~----------~~nvr~~~L~~L~~l~~~~~~~v~~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n 336 (526)
T PF01602_consen 268 AINPLIKLLS-SS----------DPNVRYIALDSLSQLAQSNPPAVFNQSLILFFLLYDDDPSIRKKALDLLYKLANESN 336 (526)
T ss_dssp HHHHHHHHHT-SS----------SHHHHHHHHHHHHHHCCHCHHHHGTHHHHHHHHHCSSSHHHHHHHHHHHHHH--HHH
T ss_pred hHHHHHHHhh-cc----------cchhehhHHHHHHHhhcccchhhhhhhhhhheecCCCChhHHHHHHHHHhhcccccc
Confidence 5555555553 10 1112333333333333321 0011111111111 111
Q ss_pred --HHHHHHHHHHHhhhccCCchhhhHHHhHHHHHHHHHHhhhccCCCccCCCcchHHHHHHHHHHHHHHHHhcCCCChhH
Q 004950 364 --PLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPL 441 (722)
Q Consensus 364 --pl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~lakgf~~~~~~~~~~~~~~~~~~~~~vi~~~l~~~~~~~~V 441 (722)
.++..+.+.+.. ..+. + . ...++..++.++.-++. ......+.+..++. .+...+
T Consensus 337 ~~~Il~eL~~~l~~---~~d~-~--~---~~~~i~~I~~la~~~~~------------~~~~~v~~l~~ll~--~~~~~~ 393 (526)
T PF01602_consen 337 VKEILDELLKYLSE---LSDP-D--F---RRELIKAIGDLAEKFPP------------DAEWYVDTLLKLLE--ISGDYV 393 (526)
T ss_dssp HHHHHHHHHHHHHH---C--H-H--H---HHHHHHHHHHHHHHHGS------------SHHHHHHHHHHHHH--CTGGGC
T ss_pred hhhHHHHHHHHHHh---ccch-h--h---hhhHHHHHHHHHhccCc------------hHHHHHHHHHHhhh--hccccc
Confidence 111111111100 0010 0 0 12344555555544431 12334556666665 344566
Q ss_pred HhHHHHHHHHHHHhcCcccccchHHHHHHHHhcCChh-hHHHHHHHHHHHHHHHhh--hHHHHHHhhhHHHHHHHHhhcc
Q 004950 442 RCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEPK-EMAGFLVLLNQLICKFNT--LVHDILDEVFPAIAGRIFNIIP 518 (722)
Q Consensus 442 re~~~~~~~r~v~~lg~~v~p~lp~li~~ll~~~~~~-~~~~fL~~~~qli~~f~~--~~~~~l~~ll~~l~~~v~~~l~ 518 (722)
.+.+...+.+++..-...-...+..++..+- ..+.+ -....+|++|+......+ .... ++. .+.....
T Consensus 394 ~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~-~~~~~~~~~~~~wilGEy~~~~~~~~~~~~----~~~----~l~~~~~ 464 (526)
T PF01602_consen 394 SNEIINVIRDLLSNNPELREKILKKLIELLE-DISSPEALAAAIWILGEYGELIENTESAPD----ILR----SLIENFI 464 (526)
T ss_dssp HCHHHHHHHHHHHHSTTTHHHHHHHHHHHHT-SSSSHHHHHHHHHHHHHHCHHHTTTTHHHH----HHH----HHHHHHT
T ss_pred cchHHHHHHHHhhcChhhhHHHHHHHHHHHH-HhhHHHHHHHHHhhhcccCCcccccccHHH----HHH----HHHHhhc
Confidence 6667667777766543332344556655333 34333 356677888887776665 1222 222 2222222
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeeecCCCCcCChHHHHHHHHHhhc-CCCchHHHHHHHHHHHH
Q 004950 519 RDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSC-NHKDYLVRKACVQIFIR 597 (722)
Q Consensus 519 ~~~~~~~p~~~~d~~r~~~~l~r~y~~fl~~i~~~~~~~vl~s~~~~~~l~~~l~~l~~~~~-~~~d~~~~k~a~~~l~~ 597 (722)
. +..+++-.-++.+..+..+++. ...-+.++..+..++. +..|+.++.-|..++.-
T Consensus 465 ~---------------~~~~vk~~ilt~~~Kl~~~~~~--------~~~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~l 521 (526)
T PF01602_consen 465 E---------------ESPEVKLQILTALAKLFKRNPE--------NEVQNEILQFLLSLATEDSSDPEVRDRAREYLRL 521 (526)
T ss_dssp T---------------SHHHHHHHHHHHHHHHHHHSCS--------TTHHHHHHHHHHCHHHHS-SSHHHHHHHHHHHHH
T ss_pred c---------------ccHHHHHHHHHHHHHHHhhCCc--------hhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 1 1122666677777777665542 0012245555555444 56799988888877754
Q ss_pred H
Q 004950 598 L 598 (722)
Q Consensus 598 l 598 (722)
+
T Consensus 522 l 522 (526)
T PF01602_consen 522 L 522 (526)
T ss_dssp H
T ss_pred H
Confidence 3
No 29
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=96.20 E-value=3.3 Score=47.48 Aligned_cols=134 Identities=13% Similarity=0.127 Sum_probs=81.1
Q ss_pred HHHHHHcChhhHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhCCCCCCChhH
Q 004950 158 LRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRL 237 (722)
Q Consensus 158 l~~i~~l~~~l~l~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~~i~~~~hp~ 237 (722)
+..+..-+++...-.+..+... +.+ .+-...-.||.++..++ .++ ..+.+++.+.+ ...++||.
T Consensus 66 l~~~~~~~~~~~~l~~n~l~kd-l~~---~n~~~~~lAL~~l~~i~---~~~-------~~~~l~~~v~~--ll~~~~~~ 129 (526)
T PF01602_consen 66 LSLYLHEDPELLILIINSLQKD-LNS---PNPYIRGLALRTLSNIR---TPE-------MAEPLIPDVIK--LLSDPSPY 129 (526)
T ss_dssp HHHHTTTSHHHHHHHHHHHHHH-HCS---SSHHHHHHHHHHHHHH----SHH-------HHHHHHHHHHH--HHHSSSHH
T ss_pred HHHHhhcchhHHHHHHHHHHHh-hcC---CCHHHHHHHHhhhhhhc---ccc-------hhhHHHHHHHH--HhcCCchH
Confidence 3445555666554444444443 443 45566788888888877 222 23444444443 23457899
Q ss_pred HHHHHHHHHHhhHHHHhhcCCChHH-HHHHhccccCCCCCCchhHHHHHHHHHHHHHHhhccc-hHHHHHHHHHhhhhh
Q 004950 238 VALVYLETVTRYMKFIQEHTQYIPV-VLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKL-VPFIENILQSLQDTI 314 (722)
Q Consensus 238 V~~~~~e~i~RY~~~~~~~p~~L~~-vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L-~~~~~~il~~l~~ll 314 (722)
||-.+...+.+..+. .|+.++. .++.+. .-+.++++.|+..|..++..+ .+.... ...++.++..+..++
T Consensus 130 VRk~A~~~l~~i~~~---~p~~~~~~~~~~l~--~lL~d~~~~V~~~a~~~l~~i--~~~~~~~~~~~~~~~~~L~~~l 201 (526)
T PF01602_consen 130 VRKKAALALLKIYRK---DPDLVEDELIPKLK--QLLSDKDPSVVSAALSLLSEI--KCNDDSYKSLIPKLIRILCQLL 201 (526)
T ss_dssp HHHHHHHHHHHHHHH---CHCCHHGGHHHHHH--HHTTHSSHHHHHHHHHHHHHH--HCTHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc---CHHHHHHHHHHHHh--hhccCCcchhHHHHHHHHHHH--ccCcchhhhhHHHHHHHhhhcc
Confidence 999999999988777 5666665 466665 445678889999998888887 222222 134455555554443
No 30
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.02 E-value=5.8 Score=48.66 Aligned_cols=334 Identities=16% Similarity=0.242 Sum_probs=169.3
Q ss_pred hcChhhhhccccccchh-hHHHHHHHHHHHHHHHHHHHhhhcChhhHHHHHHHHHHHHHHHHHhhhccCCccchhhHHHH
Q 004950 12 TLQISRVFGLVSEDGES-ELVSKVAALLTGYAMEVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQF 90 (722)
Q Consensus 12 ~L~l~~~l~~~~~~~D~-e~~~~~a~L~~~~g~el~~~~~~~~~~~~~~~~~~~l~~~~plvL~~~~~~d~~~~~~~~~F 90 (722)
.++++++-.... +.|. .|.++++..++.++..++..++. +.. ....++....-+++-...++ -++...++..
T Consensus 285 ~l~~~~~~~~~~-~~dq~~fi~~l~~~l~~f~~~~~~lle~-~~~----~~~~~~~~~~~li~i~~~~~-se~~~~~ld~ 357 (1041)
T KOG2020|consen 285 DLDIPEVYSSLS-DEDQDSFIEKLAQFLSLFFEQHIALLES-SLS----QRPVLLEALLELILISTIEP-SEIFKICLDY 357 (1041)
T ss_pred hhchhhhhhccc-HhHHHHHHHHHHHHHHHHHHHHHHHHcC-chh----hhhHHHHHHHHHHHHhccCc-hhHHHHHHHH
Confidence 344444444333 3455 89999999999999999998874 111 11122233333333333333 3333358888
Q ss_pred HHHHHHHhccC-CC-------------------ChHHHHHHHHHHHHHHHHHcccCcccccCCccCCCCChhHHHHHHHH
Q 004950 91 LSGYVATMKSL-SP-------------------LKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEY 150 (722)
Q Consensus 91 ~~~~l~~lk~~-~~-------------------l~~~~~~~l~~Ll~~li~km~yp~~~~~~~d~~~~~~~ede~~F~e~ 150 (722)
|..++..+-+. ++ -...+..++.++--..+.+|.=|+..-- .+ .|.-+.++|+
T Consensus 358 W~~lv~~l~~~~~~ll~~s~~~~~~~~~~ri~~rk~~y~~~~~~~r~l~l~~m~~Pe~vli----ve---~~~~~~vre~ 430 (1041)
T KOG2020|consen 358 WNKLVADLYYNKPPLLQLSTTLPSISDYSRIDFRKSIYQEFLSKLRLLRLERMAKPEEVLI----VE---NEQGEIVREF 430 (1041)
T ss_pred HHHHHHhhhcccccccccccccccccchhccchHHHHHHHHHHHHHHHHHHHhcCchheeE----Ee---chHHHHHHHh
Confidence 88876554221 10 1334667888888888888876655321 01 1233445554
Q ss_pred HHH---------HHHHHHHHHHcChhhHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhcccCchhhhhcccccHHhH
Q 004950 151 RKD---------LLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSEL 221 (722)
Q Consensus 151 Rk~---------l~~ll~~i~~l~~~l~l~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l 221 (722)
+++ +...+-....++...+-.+....+...+.+ ...+|..+---+.+++++.-..-++. .+..+...
T Consensus 431 ~~~~~~~~ly~~~~e~l~~~~~L~~~~t~~~~~~kl~~~l~~-~~~~~~~ln~l~~ai~sisg~~~e~~---e~k~~~~v 506 (1041)
T KOG2020|consen 431 MKDHDFITLYPVLRETLVYLLHLDVVDTEKIMTEKLAIQLDG-DEWSLHNLNRLCWAIGSISGRMLEDM---EKKFFVAV 506 (1041)
T ss_pred ccCcchhhhhHHHHHHHHHHHHhhhhhhhhhhhHhHHHHhhH-HHHhhhhhhhHHHHHHHHHhhhHHHH---HHHHHHHH
Confidence 441 111111111122221111122222222211 11234444444444442222221110 11122221
Q ss_pred HH---HHHhCCCCCCChhHHHHHHHHHHHhhHHHHhhcCCChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhhcc
Q 004950 222 VP---MLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAK 298 (722)
Q Consensus 222 ~~---~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~~p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~ 298 (722)
.. .+++......+--.|..--+-+++-|-.|...|-.+|..+..-+. .=+|.-+..|+--+|-.|..++..|+.+
T Consensus 507 ~~d~l~l~E~~~~kdn~avi~~Ni~~vv~q~p~Fl~~h~~~Lkt~~~~L~--efmhe~h~gvqdmacd~F~~ii~~~~~~ 584 (1041)
T KOG2020|consen 507 IRDLLNLCERKRGKDNKAVIASNIMYVVGQYPRFLKAHWKFLKTVVHKLF--EFMHETHEGVQDMACDTFIKIIQKCKRH 584 (1041)
T ss_pred HHHHHHHHHHhhcCCchhHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH--HHHhhhhHHHHhhhHHHHHHHHHhhhhh
Confidence 11 122211111222345556667778888888888666663333332 1222233447777888899999999985
Q ss_pred c--------hHHHHHHHHHhhhhhhhhccCCcccccCCCCchhhHHHHHHHHHHccCCCChhhhHHHHHHhHHHHHHHHH
Q 004950 299 L--------VPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQ 370 (722)
Q Consensus 299 L--------~~~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~L~Eaig~Lis~~~~~~e~~~~~l~~ll~pl~~~l~ 370 (722)
. .|+...++..+.+.+. + +.+..+-..||++|.+++.. .+++...++....+.---..+.
T Consensus 585 fv~~~~~e~~~fv~~~~~~l~~i~~----------~-l~~~q~~~~~~al~~~V~~~-~~~~~~~~~~~~~~vl~~~~~~ 652 (1041)
T KOG2020|consen 585 FVITQLGETKPFVGELLLNLTAITE----------D-LQPQQRHTFYEALGLMVSAE-IDPAKAERLQSKLMVLPNRAWI 652 (1041)
T ss_pred heeecccccccchHHHhhcccchhc----------C-chHHHHHHHHHHHHHHHHHh-CCHhhHHHHHhcccccchhhhc
Confidence 2 2455555555444332 1 13445678999999766654 4677777777777666666666
Q ss_pred HHHHhhh
Q 004950 371 TMLLDAK 377 (722)
Q Consensus 371 ~~~~~~~ 377 (722)
..+.++.
T Consensus 653 nii~~~~ 659 (1041)
T KOG2020|consen 653 NIILQAR 659 (1041)
T ss_pred chhhcCc
Confidence 6555443
No 31
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.01 E-value=0.017 Score=50.25 Aligned_cols=92 Identities=20% Similarity=0.235 Sum_probs=71.6
Q ss_pred HHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhhc-CCChHHHHHHhcccc
Q 004950 193 EAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEH-TQYIPVVLAAFLDER 271 (722)
Q Consensus 193 EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~~-p~~L~~vL~~~l~~~ 271 (722)
=.+|.+|.+++.+++.. ....+.++++.++. ...+++++||+.++|.+.--++..... -.|++.+..++. +
T Consensus 4 ~ggli~Laa~ai~l~~~----~~~~l~~Il~pVL~--~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~--k 75 (97)
T PF12755_consen 4 KGGLIGLAAVAIALGKD----ISKYLDEILPPVLK--CFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALC--K 75 (97)
T ss_pred hHHHHHHHHHHHHchHh----HHHHHHHHHHHHHH--HcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Confidence 36788999999998765 24678888888886 356788999999999999988887542 236777888888 7
Q ss_pred CCCCCCchhHHHHHHHHHHHHH
Q 004950 272 GIHHPNVHVSRRASYLFMRVVK 293 (722)
Q Consensus 272 Gl~~~~~~V~~ra~ylf~r~~k 293 (722)
-+.+++++||+.|+ ++-|+.|
T Consensus 76 l~~D~d~~Vr~~a~-~Ld~llk 96 (97)
T PF12755_consen 76 LSADPDENVRSAAE-LLDRLLK 96 (97)
T ss_pred HHcCCchhHHHHHH-HHHHHhc
Confidence 88899999998885 5566655
No 32
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=95.83 E-value=0.012 Score=51.19 Aligned_cols=56 Identities=16% Similarity=0.386 Sum_probs=47.4
Q ss_pred CCChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhhh
Q 004950 257 TQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTI 314 (722)
Q Consensus 257 p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L~~~~~~il~~l~~ll 314 (722)
.+|++.+++-++ .++.+++.+||..||.++..++|.+|..+.+|.++|...+..+.
T Consensus 22 ~~~l~~Il~pVL--~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~ 77 (97)
T PF12755_consen 22 SKYLDEILPPVL--KCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLS 77 (97)
T ss_pred HHHHHHHHHHHH--HHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666 67778999999999999999999999999999999998887765
No 33
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.36 E-value=8.7 Score=45.98 Aligned_cols=100 Identities=15% Similarity=0.296 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHhcCCCChhHHhHHHHHHHHHHHhcC---cccccchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHh
Q 004950 419 LMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLG---ASVFPYLPKALEQLLAESEPKEMAGFLVLLNQLICKFN 495 (722)
Q Consensus 419 ~~~~~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~lg---~~v~p~lp~li~~ll~~~~~~~~~~fL~~~~qli~~f~ 495 (722)
..+.++++.+..++.. .++-+||=-+-.+++-++.... ..+.|++|.++..|+.-....|..+.-..+-.+|.+|+
T Consensus 498 ~~l~~ale~t~~~l~~-d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fs 576 (1010)
T KOG1991|consen 498 NNLSEALELTHNCLLN-DNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFS 576 (1010)
T ss_pred HHHHHHHHHHHHHhcc-CCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 5788999999999986 4455566555566666666654 44899999999999986665565555567789999999
Q ss_pred hhHHHHHHhhhHHHHHHHHhhccC
Q 004950 496 TLVHDILDEVFPAIAGRIFNIIPR 519 (722)
Q Consensus 496 ~~~~~~l~~ll~~l~~~v~~~l~~ 519 (722)
+++.|+-.++...+.+.-.++++.
T Consensus 577 eElsPfA~eL~q~La~~F~k~l~~ 600 (1010)
T KOG1991|consen 577 EELSPFAVELCQNLAETFLKVLQT 600 (1010)
T ss_pred HhhchhHHHHHHHHHHHHHHHHhc
Confidence 999998888888887777777775
No 34
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.95 E-value=13 Score=46.46 Aligned_cols=311 Identities=14% Similarity=0.207 Sum_probs=180.7
Q ss_pred ChhHHHHHHHHHHHhhHHHHhh-----------------cCCChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhh
Q 004950 234 SNRLVALVYLETVTRYMKFIQE-----------------HTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLK 296 (722)
Q Consensus 234 ~hp~V~~~~~e~i~RY~~~~~~-----------------~p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r 296 (722)
+.|..-|.||.+.--.+-|-.+ --.|++..++.+. |==.+|+++|+.+-...-..++.+-|
T Consensus 953 ~qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLy--RY~yDP~~~Vq~aM~sIW~~Li~D~k 1030 (1702)
T KOG0915|consen 953 GQPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLY--RYQYDPDKKVQDAMTSIWNALITDSK 1030 (1702)
T ss_pred CChHHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHh--hhccCCcHHHHHHHHHHHHHhccChH
Confidence 5678999999999999999764 1246777777776 55568999999888888888888888
Q ss_pred ccchHHHHHHHHHhhhhhhhhccCCcccccCCCCchhhHHHHH----HHHHHccCCCChhhhHHHHHHhHHHHHHHHHHH
Q 004950 297 AKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEA----IGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTM 372 (722)
Q Consensus 297 ~~L~~~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~L~Ea----ig~Lis~~~~~~e~~~~~l~~ll~pl~~~l~~~ 372 (722)
..+..|+.+|++-+-+-++-+ .-++=|| +.-|+.. .|-++..+.+-.+..-++.-+..+
T Consensus 1031 ~~vd~y~neIl~eLL~~lt~k---------------ewRVReasclAL~dLl~g--~~~~~~~e~lpelw~~~fRvmDDI 1093 (1702)
T KOG0915|consen 1031 KVVDEYLNEILDELLVNLTSK---------------EWRVREASCLALADLLQG--RPFDQVKEKLPELWEAAFRVMDDI 1093 (1702)
T ss_pred HHHHHHHHHHHHHHHHhccch---------------hHHHHHHHHHHHHHHHcC--CChHHHHHHHHHHHHHHHHHHHHH
Confidence 888889999988775544311 1122233 3333433 355666666666655555444333
Q ss_pred HHhhhccCCchhhhHHHhHHHHHHHHHHhhhccCCCccCCCcchHHHHHHHHHHHHHHHHhcCCCChhHHhHHHHHHHHH
Q 004950 373 LLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRM 452 (722)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~lakgf~~~~~~~~~~~~~~~~~~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~ 452 (722)
-..-. . ..+....+++.+---..+. ..+ ....+....++|.++.--. +.+..+||..+...+-.+
T Consensus 1094 KEsVR---------~--aa~~~~~~lsKl~vr~~d~--~~~-~~~~~~l~~iLPfLl~~gi-ms~v~evr~~si~tl~dl 1158 (1702)
T KOG0915|consen 1094 KESVR---------E--AADKAARALSKLCVRICDV--TNG-AKGKEALDIILPFLLDEGI-MSKVNEVRRFSIGTLMDL 1158 (1702)
T ss_pred HHHHH---------H--HHHHHHHHHHHHHhhhccc--CCc-ccHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHH
Confidence 21110 0 0233333444321111111 111 1134556666666654332 366689999999999999
Q ss_pred HHhcCcccccchHHHHHHHHhcCChh--hHHHHH--HHHHHHHHH---Hhhh------HHHHHH--------hhhHHHHH
Q 004950 453 VDTLGASVFPYLPKALEQLLAESEPK--EMAGFL--VLLNQLICK---FNTL------VHDILD--------EVFPAIAG 511 (722)
Q Consensus 453 v~~lg~~v~p~lp~li~~ll~~~~~~--~~~~fL--~~~~qli~~---f~~~------~~~~l~--------~ll~~l~~ 511 (722)
+...|..+.|++|+++..|+..++.- ..-.|+ ...||=... -+.+ +.+.++ +++..++.
T Consensus 1159 ~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip 1238 (1702)
T KOG0915|consen 1159 AKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIP 1238 (1702)
T ss_pred HHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHH
Confidence 99999999999999999999877542 222233 223321111 1111 222222 24445666
Q ss_pred HHHhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeeecCCCCcCChHHHHHHHHHhhcCCCchHHHHHH
Q 004950 512 RIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKAC 591 (722)
Q Consensus 512 ~v~~~l~~~~~~~~p~~~~d~~r~~~~l~r~y~~fl~~i~~~~~~~vl~s~~~~~~l~~~l~~l~~~~~~~~d~~~~k~a 591 (722)
++..++... -..+| +-..-.|+..++.. +.....|+-...+.+++-++.+ +.+.++|++
T Consensus 1239 ~l~el~R~s-----Vgl~T---------kvg~A~fI~~L~~r------~~~emtP~sgKll~al~~g~~d-RNesv~kaf 1297 (1702)
T KOG0915|consen 1239 RLTELVRGS-----VGLGT---------KVGCASFISLLVQR------LGSEMTPYSGKLLRALFPGAKD-RNESVRKAF 1297 (1702)
T ss_pred HHHHHHhcc-----CCCCc---------chhHHHHHHHHHHH------hccccCcchhHHHHHHhhcccc-ccHHHHHHH
Confidence 677666642 11222 23344555555543 2234455666666666655545 666777765
Q ss_pred HHHHHHHH
Q 004950 592 VQIFIRLI 599 (722)
Q Consensus 592 ~~~l~~li 599 (722)
..-+..+.
T Consensus 1298 AsAmG~L~ 1305 (1702)
T KOG0915|consen 1298 ASAMGYLA 1305 (1702)
T ss_pred HHHHHHHH
Confidence 55554444
No 35
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=94.94 E-value=7.8 Score=43.17 Aligned_cols=321 Identities=19% Similarity=0.229 Sum_probs=169.8
Q ss_pred ChhhHHHHHHHHHHhcccCchhh-hhcc-----cccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhh------
Q 004950 188 NVEEVEAALTLLYALGESMSEEA-MRTG-----AGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQE------ 255 (722)
Q Consensus 188 ~W~~~EaaL~~l~~~gE~i~~~~-~~~~-----~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~------ 255 (722)
+-....+.+-+++.+-+....+. ..+. ...++.++....+. .....+ ....++++++|-..++.+
T Consensus 56 ~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~-~~~~~~--~~~~~L~~~~~l~~~iv~~l~~~~ 132 (415)
T PF12460_consen 56 SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQA-SDQSSD--LDDRVLELLSRLINLIVRSLSPEK 132 (415)
T ss_pred ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhh-cccccc--cchHHHHHHHHHHHHHHHhCCHHH
Confidence 56677888888888877665433 1111 12566666666654 222222 344667788888777764
Q ss_pred cCCChHHHHHHhc---cccCCCCCCc---hhHHHHHHHHHHHHHHhhccch-HHHHHHHHHhhhhhhhhccCCcccccCC
Q 004950 256 HTQYIPVVLAAFL---DERGIHHPNV---HVSRRASYLFMRVVKLLKAKLV-PFIENILQSLQDTIARFTSMNYASKELS 328 (722)
Q Consensus 256 ~p~~L~~vL~~~l---~~~Gl~~~~~---~V~~ra~ylf~r~~k~~r~~L~-~~~~~il~~l~~ll~~~~~~~~~~~~~~ 328 (722)
|.+.+..+-..|+ +...+..... ...++.-.++..++..+++... |..+++++.+-.+.....
T Consensus 133 q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~---------- 202 (415)
T PF12460_consen 133 QQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSE---------- 202 (415)
T ss_pred HHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCC----------
Confidence 5566777777777 2222222221 2456777788999988888875 677777766655442111
Q ss_pred CCchhhHHHHHHHHHHccCCCChhhhHHHHHHhHHHHHHHHHHHHHhhhccCCchhhhHHHhHHHHHHHHHHhhhccCCC
Q 004950 329 GSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNER 408 (722)
Q Consensus 329 ~~~d~l~L~Eaig~Lis~~~~~~e~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~lakgf~~~ 408 (722)
....+....+.++.++-.. +.++ .++.++..+...+ ... .+... -...+..+..++||+=-.
T Consensus 203 ~~~~~~~~~~~la~LvNK~--~~~~---~l~~~l~~~~~~~------~~~-~~~~~------~~~~~~~~~Wi~KaLv~R 264 (415)
T PF12460_consen 203 DEFSRLAALQLLASLVNKW--PDDD---DLDEFLDSLLQSI------SSS-EDSEL------RPQALEILIWITKALVMR 264 (415)
T ss_pred ChHHHHHHHHHHHHHHcCC--CChh---hHHHHHHHHHhhh------ccc-CCcch------hHHHHHHHHHHHHHHHHc
Confidence 1334556667777777653 2222 4444444444444 111 11111 123444555556776421
Q ss_pred ccCCCcchHHHHHHHHHHHHHHHHhcCCCChhHHhHHHHHHHHHHHhcCcccccchHHHHHHHHhcCChhhHHHHHHHHH
Q 004950 409 LVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEPKEMAGFLVLLN 488 (722)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~lg~~v~p~lp~li~~ll~~~~~~~~~~fL~~~~ 488 (722)
. .|...+ ..+-+..++. + +.+...+-..|+-++.-. +.+ ++. +..+
T Consensus 265 ~----~~~~~~----~~~~L~~lL~---~-~~~g~~aA~~f~il~~d~--------~~~----l~~----~~~a------ 310 (415)
T PF12460_consen 265 G----HPLATE----LLDKLLELLS---S-PELGQQAAKAFGILLSDS--------DDV----LNK----ENHA------ 310 (415)
T ss_pred C----CchHHH----HHHHHHHHhC---C-hhhHHHHHHHHhhHhcCc--------HHh----cCc----cccc------
Confidence 1 121222 2223333333 2 444444433333222211 111 110 0000
Q ss_pred HHHHHHhhhHHHHHHhhhHHHHHHHHhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeeecCCCCcCCh
Q 004950 489 QLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYL 568 (722)
Q Consensus 489 qli~~f~~~~~~~l~~ll~~l~~~v~~~l~~~~~~~~p~~~~d~~r~~~~l~r~y~~fl~~i~~~~~~~vl~s~~~~~~l 568 (722)
.+-.-||..++ ..+++ ++.+-.... +.+ .+..|+.-+..++.+=|.+++.++ +
T Consensus 311 ~vklLykQR~F---~~~~p----~L~~~~~~~--------~~~-------~k~~yL~ALs~ll~~vP~~vl~~~-----l 363 (415)
T PF12460_consen 311 NVKLLYKQRFF---TQVLP----KLLEGFKEA--------DDE-------IKSNYLTALSHLLKNVPKSVLLPE-----L 363 (415)
T ss_pred hhhhHHhHHHH---HHHHH----HHHHHHhhc--------Chh-------hHHHHHHHHHHHHhhCCHHHHHHH-----H
Confidence 11111443322 22333 333333321 111 778999999999999888887764 6
Q ss_pred HHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 004950 569 DPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKD 601 (722)
Q Consensus 569 ~~~l~~l~~~~~~~~d~~~~k~a~~~l~~li~~ 601 (722)
+.++--+++ +++.+|+..+.++++.+..+++.
T Consensus 364 ~~LlPLLlq-sL~~~~~~v~~s~L~tL~~~l~~ 395 (415)
T PF12460_consen 364 PTLLPLLLQ-SLSLPDADVLLSSLETLKMILEE 395 (415)
T ss_pred HHHHHHHHH-HhCCCCHHHHHHHHHHHHHHHHc
Confidence 666665555 67889999999999999999844
No 36
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=94.64 E-value=9.3 Score=45.22 Aligned_cols=222 Identities=16% Similarity=0.276 Sum_probs=119.7
Q ss_pred CChhhHHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhCCCCCCChhHHHHHH-HHHHHhhHHHHhhcCCChHHHHH
Q 004950 187 RNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVY-LETVTRYMKFIQEHTQYIPVVLA 265 (722)
Q Consensus 187 ~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~-~e~i~RY~~~~~~~p~~L~~vL~ 265 (722)
.+++ +.++..||+++..=+....-.....++.+|.+++..+-+...+..+.+.. +-+-.||++-+... +-|+..+.
T Consensus 384 ~~~~--~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g-~gL~~L~~ 460 (708)
T PF05804_consen 384 PNFR--EVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEG-NGLQSLMK 460 (708)
T ss_pred CchH--HHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhc-CcHHHHHH
Confidence 4555 67999999998742211111223568888888887422222222222222 33334666655543 23444333
Q ss_pred HhccccCCCCCCchhHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhhhhhhccCCcccccCCCCchhhHHHHHHHHHHc
Q 004950 266 AFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIG 345 (722)
Q Consensus 266 ~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L~~~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~L~Eaig~Lis 345 (722)
+++...++ ++.++++....|=++--..+...+.++..+-. ..++.-.+.|++|+|.-
T Consensus 461 -----ra~~~~D~--------lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~----------~~~~ee~~vE~LGiLaN 517 (708)
T PF05804_consen 461 -----RALKTRDP--------LLLKLIRNISQHDGPLKELFVDFIGDLAKIVS----------SGDSEEFVVECLGILAN 517 (708)
T ss_pred -----HHHhcccH--------HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhh----------cCCcHHHHHHHHHHHHh
Confidence 33333332 35567776555543333344444555443321 12234499999999988
Q ss_pred cCCCChhhhHHHHHHhHHHHHHHHHHHHHhhhccCCchhhhHHHhHHHHHHHHHHhhhccCCCccCCCcchHHHHHH--H
Q 004950 346 MEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFK--Q 423 (722)
Q Consensus 346 ~~~~~~e~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~lakgf~~~~~~~~~~~~~~~~~--~ 423 (722)
..- +..+-...++. ..++.-+.+.+....+ +++. +..+++++|+++. + +.|...+. .
T Consensus 518 L~~-~~ld~~~ll~~--~~llp~L~~~L~~g~~---~dDl-----~LE~Vi~~gtla~---d-------~~~A~lL~~sg 576 (708)
T PF05804_consen 518 LTI-PDLDWAQLLQE--YNLLPWLKDLLKPGAS---EDDL-----LLEVVILLGTLAS---D-------PECAPLLAKSG 576 (708)
T ss_pred ccc-CCcCHHHHHHh--CCHHHHHHHHhCCCCC---ChHH-----HHHHHHHHHHHHC---C-------HHHHHHHHhCC
Confidence 742 33344555542 1223333333332111 1121 3457788898862 1 23454444 5
Q ss_pred HHHHHHHHHhcCCCChhHHhHHHHHHHHHHHh
Q 004950 424 TLDVLLQILVVFPKVEPLRCKVTSFIHRMVDT 455 (722)
Q Consensus 424 ~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~ 455 (722)
+.+.+..++.....+.++.=.+.++|.+++..
T Consensus 577 li~~Li~LL~~kqeDdE~VlQil~~f~~ll~h 608 (708)
T PF05804_consen 577 LIPTLIELLNAKQEDDEIVLQILYVFYQLLFH 608 (708)
T ss_pred hHHHHHHHHHhhCchHHHHHHHHHHHHHHHcC
Confidence 78888888888888888877788888888766
No 37
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.13 E-value=10 Score=43.84 Aligned_cols=235 Identities=15% Similarity=0.214 Sum_probs=125.3
Q ss_pred hHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHH
Q 004950 168 VTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVT 247 (722)
Q Consensus 168 l~l~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~ 247 (722)
.++..+.+.+..-+.+ .+--++-.||-+|..++ .++--+ ..-+.+|.+ ++ +..|-||--++.++
T Consensus 105 dvlmL~tn~~rkdl~S---~n~ye~giAL~GLS~fv---TpdLAR---DLa~Dv~tL-L~-----sskpYvRKkAIl~l- 168 (877)
T KOG1059|consen 105 DVLMLTTNLLRKDLNS---SNVYEVGLALSGLSCIV---TPDLAR---DLADDVFTL-LN-----SSKPYVRKKAILLL- 168 (877)
T ss_pred cHHHHHHHHHHHHhcc---Cccchhhheeccccccc---CchhhH---HHHHHHHHH-Hh-----cCchHHHHHHHHHH-
Confidence 4444455555554443 34445566666664443 332111 122333433 32 24456776665554
Q ss_pred hhHHHHhhcCCChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhhccchH---HHHHHHHHhhh---------hhh
Q 004950 248 RYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVP---FIENILQSLQD---------TIA 315 (722)
Q Consensus 248 RY~~~~~~~p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L~~---~~~~il~~l~~---------ll~ 315 (722)
++-|.+-|+-|.+..+-|. --+.+|++.|+++| ..-+|+..|+.=.+ .++.+..-+-+ ++-
T Consensus 169 --ykvFLkYPeAlr~~FprL~--EkLeDpDp~V~SAA---V~VICELArKnPknyL~LAP~ffkllttSsNNWmLIKiiK 241 (877)
T KOG1059|consen 169 --YKVFLKYPEALRPCFPRLV--EKLEDPDPSVVSAA---VSVICELARKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLK 241 (877)
T ss_pred --HHHHHhhhHhHhhhHHHHH--HhccCCCchHHHHH---HHHHHHHHhhCCcccccccHHHHHHHhccCCCeehHHHHH
Confidence 5667777999999999998 68889999999999 56666666643322 23333332211 010
Q ss_pred hhcc---CC---------cccccCCCCchhhHHHHHHHHHHccC---CCChhhhHHHHHHhHHHHHHHHHHHHHhhhccC
Q 004950 316 RFTS---MN---------YASKELSGSEDGSHIFEAIGLLIGME---DVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLN 380 (722)
Q Consensus 316 ~~~~---~~---------~~~~~~~~~~d~l~L~Eaig~Lis~~---~~~~e~~~~~l~~ll~pl~~~l~~~~~~~~~~~ 380 (722)
+.+. ++ +..+-+-+.....-|||+|-++++.. |.|... ....-.++++...+...
T Consensus 242 LF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~------asiqLCvqKLr~fieds---- 311 (877)
T KOG1059|consen 242 LFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHS------ASIQLCVQKLRIFIEDS---- 311 (877)
T ss_pred HHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcH------HHHHHHHHHHhhhhhcC----
Confidence 0110 11 11110112233568999999999961 112211 11223355666555321
Q ss_pred CchhhhHHHhHHHHHHHHHHhhhccCCCccCCCcchHHHHHHHHHHHHHHHHhcCCCChhHHhHHHHHHHHHHHh
Q 004950 381 PEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDT 455 (722)
Q Consensus 381 ~~~~~~~~~~~~~~i~~l~~lakgf~~~~~~~~~~~~~~~~~~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~ 455 (722)
++++. .--+.|++.++|.= | ...+.--++|++||. ..++.||=++--++-+||.-
T Consensus 312 -DqNLK-----YlgLlam~KI~ktH---------p---~~Vqa~kdlIlrcL~--DkD~SIRlrALdLl~gmVsk 366 (877)
T KOG1059|consen 312 -DQNLK-----YLGLLAMSKILKTH---------P---KAVQAHKDLILRCLD--DKDESIRLRALDLLYGMVSK 366 (877)
T ss_pred -CccHH-----HHHHHHHHHHhhhC---------H---HHHHHhHHHHHHHhc--cCCchhHHHHHHHHHHHhhh
Confidence 11221 23345556555431 2 123345578888888 78888888887777777653
No 38
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=93.96 E-value=17 Score=43.13 Aligned_cols=58 Identities=10% Similarity=0.019 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHhcCCCeeecCCCCcCChHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 004950 539 LQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKD 601 (722)
Q Consensus 539 l~r~y~~fl~~i~~~~~~~vl~s~~~~~~l~~~l~~l~~~~~~~~d~~~~k~a~~~l~~li~~ 601 (722)
+.---+.+++.++.+.++.+ +......++-++.++.+...|..++..|-..|+-+|+.
T Consensus 633 l~~~aidvLttvvr~tp~pL-----~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~ 690 (1005)
T KOG2274|consen 633 LCAIAIDVLTTVLRNTPSPL-----PNLLICYAFPAVAKITLHSDDHETLQNATECLRALISV 690 (1005)
T ss_pred hhHHHHHHHHHHHhcCCCCc-----cHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhc
Confidence 44556778888888887652 22234445557777666667888888888888888866
No 39
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=93.52 E-value=19 Score=41.98 Aligned_cols=154 Identities=15% Similarity=0.149 Sum_probs=89.7
Q ss_pred HHHHHHHhhhccCCccc--hhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHcccCcccccCCccCCCCChhHH
Q 004950 67 EVLPSVFYVMQNCEVDT--TFSIVQFLSGYVATMKSLSPLKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEE 144 (722)
Q Consensus 67 ~~~plvL~~~~~~d~~~--~~~~~~F~~~~l~~lk~~~~l~~~~~~~l~~Ll~~li~km~yp~~~~~~~d~~~~~~~ede 144 (722)
.++.-+|..+++.+.+. ....|+-... + +....++|+.+++..++.+++-++..
T Consensus 759 ~lidgil~Afqeqtt~d~vml~gfg~V~~--~-------lg~r~kpylpqi~stiL~rLnnksa~--------------- 814 (1172)
T KOG0213|consen 759 RLIDGILYAFQEQTTEDSVMLLGFGTVVN--A-------LGGRVKPYLPQICSTILWRLNNKSAK--------------- 814 (1172)
T ss_pred HHHHHHHHHHHhcccchhhhhhhHHHHHH--H-------HhhccccchHHHHHHHHHHhcCCChh---------------
Confidence 45555778888864444 3334443333 1 22334578999999999999876432
Q ss_pred HHHHHHHHHHHHHHHHHHHc----ChhhHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhcccCchhhhhcccccHHh
Q 004950 145 DRMVEYRKDLLVLLRSVGRV----APEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSE 220 (722)
Q Consensus 145 ~~F~e~Rk~l~~ll~~i~~l----~~~l~l~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~ 220 (722)
.|.+-.|++-.++.+ +.+..+.++..++-+.+.. ..-+.+-.-|-++.++--.+.-.. ...++..
T Consensus 815 -----vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylge---eypEvLgsILgAikaI~nvigm~k---m~pPi~d 883 (1172)
T KOG0213|consen 815 -----VRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGE---EYPEVLGSILGAIKAIVNVIGMTK---MTPPIKD 883 (1172)
T ss_pred -----HHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCc---ccHHHHHHHHHHHHHHHHhccccc---cCCChhh
Confidence 577777777666654 3444566666777766542 222233333444444443332211 1234444
Q ss_pred HHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhhcCCCh
Q 004950 221 LVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYI 260 (722)
Q Consensus 221 l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~~p~~L 260 (722)
+++.|.. |...-|.+|+-.++.++|+-+. +.|+|+
T Consensus 884 llPrltP--ILknrheKVqen~IdLvg~Iad---rgpE~v 918 (1172)
T KOG0213|consen 884 LLPRLTP--ILKNRHEKVQENCIDLVGTIAD---RGPEYV 918 (1172)
T ss_pred hcccchH--hhhhhHHHHHHHHHHHHHHHHh---cCcccC
Confidence 5554442 4455799999999999998664 346654
No 40
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=93.35 E-value=4 Score=41.13 Aligned_cols=188 Identities=13% Similarity=0.164 Sum_probs=96.5
Q ss_pred ChhHHHHHHHHHHHhhHHHH--hhcCC----ChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhhccchHHHHHHH
Q 004950 234 SNRLVALVYLETVTRYMKFI--QEHTQ----YIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENIL 307 (722)
Q Consensus 234 ~hp~V~~~~~e~i~RY~~~~--~~~p~----~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L~~~~~~il 307 (722)
.....|..+++.+.++...- ..+++ .+..++..+. ..+.+....|...||.++..+++.++.++.||++.++
T Consensus 19 ~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~--~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 19 SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAII--KQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHH--H-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHH--HHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 34667777777777776665 22221 2223334555 5666777779999999999999999999999999988
Q ss_pred HHhhhhhhhhccCCcccccCCCCchhhHHHHHHHHHHccCCCChhhhHHHHHHhHHHHHHHHHHHHHhhhccCCchhhhH
Q 004950 308 QSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAK 387 (722)
Q Consensus 308 ~~l~~ll~~~~~~~~~~~~~~~~~d~l~L~Eaig~Lis~~~~~~e~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~ 387 (722)
..+-..+.-+. . -=+-...+++-.++...+ +...++.+. +....... +...
T Consensus 97 ~~Ll~~~~~~~-------~----~i~~~a~~~L~~i~~~~~--------~~~~~~~~~---l~~~~~~K-------n~~v 147 (228)
T PF12348_consen 97 PPLLKKLGDSK-------K----FIREAANNALDAIIESCS--------YSPKILLEI---LSQGLKSK-------NPQV 147 (228)
T ss_dssp HHHHHGGG----------H----HHHHHHHHHHHHHHTTS---------H--HHHHHH---HHHHTT-S--------HHH
T ss_pred HHHHHHHcccc-------H----HHHHHHHHHHHHHHHHCC--------cHHHHHHHH---HHHHHhCC-------CHHH
Confidence 87765543110 0 001122334444444422 111111111 11111110 1011
Q ss_pred HHhHHHHHHHHHHhhhccCCCccCCCcchHHHHHHHHHHHHHHHHhcCCCChhHHhHHHHHHHHHHHhcCccc
Q 004950 388 FANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASV 460 (722)
Q Consensus 388 ~~~~~~~i~~l~~lakgf~~~~~~~~~~~~~~~~~~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~lg~~v 460 (722)
-...+.++..+...++.. ...-.-...+.++.+.+..+++ +.+.+||++++.+|..+..+.|...
T Consensus 148 ---R~~~~~~l~~~l~~~~~~---~~~l~~~~~~~~l~~~l~~~l~--D~~~~VR~~Ar~~~~~l~~~~~~~a 212 (228)
T PF12348_consen 148 ---REECAEWLAIILEKWGSD---SSVLQKSAFLKQLVKALVKLLS--DADPEVREAARECLWALYSHFPERA 212 (228)
T ss_dssp ---HHHHHHHHHHHHTT--------GGG--HHHHHHHHHHHHHHHT--SS-HHHHHHHHHHHHHHHHHH-HHH
T ss_pred ---HHHHHHHHHHHHHHccch---HhhhcccchHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHCCHhh
Confidence 123444444444433310 0000012245778888888888 8999999999999999988887554
No 41
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=93.04 E-value=0.059 Score=36.06 Aligned_cols=30 Identities=17% Similarity=0.228 Sum_probs=24.4
Q ss_pred HHHhccccCCCCCCchhHHHHHHHHHHHHHHh
Q 004950 264 LAAFLDERGIHHPNVHVSRRASYLFMRVVKLL 295 (722)
Q Consensus 264 L~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~ 295 (722)
++.++ .++.+++++||..|++.+..+++.|
T Consensus 2 lp~l~--~~l~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 2 LPILL--QLLNDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHH--HHHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHH--HHcCCCCHHHHHHHHHHHHHHHhhC
Confidence 55666 5777899999999999999999865
No 42
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=92.81 E-value=8.1 Score=43.22 Aligned_cols=253 Identities=17% Similarity=0.200 Sum_probs=143.0
Q ss_pred hccchHHHHHHHHHhhhhhhhhccCCcccccCCCCchhhHHHHHHHHHHccCCCChhhhHHHHHHhHHHHHHHHHHHHHh
Q 004950 296 KAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLD 375 (722)
Q Consensus 296 r~~L~~~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~L~Eaig~Lis~~~~~~e~~~~~l~~ll~pl~~~l~~~~~~ 375 (722)
+..+.|+++++++.+-.++.... ..+--|++-+|-.+++... |....+...+++-+...+..+..+
T Consensus 17 ~~di~p~~~~ll~~Lf~~i~~~~-----------s~ENeylMk~iMRvl~~~~---e~~~p~~~~il~~L~~il~~v~kN 82 (435)
T PF03378_consen 17 KADIQPFAQQLLQNLFALIEKPG-----------SAENEYLMKCIMRVLSVLQ---EDILPIAVEILQHLTAILKEVSKN 82 (435)
T ss_dssp GGGTTCCHHHHHHHHHHHHHTT------------STC-HHHHHHHHHHHHHST---TTTGGGHHHHHHHHHHHHHHHHTS
T ss_pred HHHhhhhHHHHHHHHHHHHhcCC-----------CccchHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 46788999999999887775331 1233499999999999743 344455556666555555444322
Q ss_pred hhccCCchhhhHHHhHHHHHHHHHHhhhccCCCccCCCcch-HHHHHHHHHHHHHHHHhcCCCChhHHhHHHHHHHHHHH
Q 004950 376 AKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPA-IGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVD 454 (722)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~i~~l~~lakgf~~~~~~~~~~~-~~~~~~~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~ 454 (722)
++ ++ .- -|-...++|.+-|-.... +|. +...-..++|++..+|+ ....+....+.+.+..+++
T Consensus 83 -Ps--nP---~F---nHylFEsi~~lir~~~~~-----~~~~v~~~E~~L~P~f~~ILq--~dV~EF~PYvfQIla~Lle 146 (435)
T PF03378_consen 83 -PS--NP---RF---NHYLFESIGALIRFVCEA-----DPEAVSQFEEALFPPFQEILQ--QDVQEFIPYVFQILAQLLE 146 (435)
T ss_dssp ------H---HH---HHHHHHHHHHHHHHS-GG-----GHH---HHHHHHHHHHHHHHH--TT-TTTHHHHHHHHHHHHH
T ss_pred -CC--Cc---ch---hhhHHHHHHHHHHhccCC-----ChhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 11 11 11 244556666654432211 122 23445558899999998 5566788889999999999
Q ss_pred hcC-cccccchHHHHHHHHhc---CChhhHHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHhhccCCCCCCCCCCCC
Q 004950 455 TLG-ASVFPYLPKALEQLLAE---SEPKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNT 530 (722)
Q Consensus 455 ~lg-~~v~p~lp~li~~ll~~---~~~~~~~~fL~~~~qli~~f~~~~~~~l~~ll~~l~~~v~~~l~~~~~~~~p~~~~ 530 (722)
.-. +.+-+..-.+...|++- -....+.....++..++.+....+. -...+.++++..-.+++.. ..
T Consensus 147 ~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i~--~~~~l~~iLgvFQkLi~sk--------~~ 216 (435)
T PF03378_consen 147 LRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFIV--ANNQLEPILGVFQKLIASK--------AN 216 (435)
T ss_dssp HSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG------S-CHHHHHHHHHHHT-T--------TC
T ss_pred cCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhhc--chhhHHHHHHHHHHHHCCC--------Cc
Confidence 876 33333334444444442 1223455556677777777776542 1234555555444555532 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCeeecCCCCcCChHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHh
Q 004950 531 EEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDW 602 (722)
Q Consensus 531 d~~r~~~~l~r~y~~fl~~i~~~~~~~vl~s~~~~~~l~~~l~~l~~~~~~~~d~~~~k~a~~~l~~li~~~ 602 (722)
| ...|.++.+++.+-+...+ .+++.+++..++.-....+-+.-.|..+.|++-++...
T Consensus 217 D---------~~gF~LL~~iv~~~p~~~l-----~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~ 274 (435)
T PF03378_consen 217 D---------HYGFDLLESIVENLPPEAL-----EPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKY 274 (435)
T ss_dssp H---------HHHHHHHHHHHHHS-HHHH-----GGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH
T ss_pred c---------hHHHHHHHHHHHHCCHHHH-----HHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHc
Confidence 3 3467899999987765442 34677777766654444444555566666766665444
No 43
>PTZ00429 beta-adaptin; Provisional
Probab=92.65 E-value=28 Score=41.69 Aligned_cols=309 Identities=13% Similarity=0.134 Sum_probs=153.6
Q ss_pred CChhhHHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhhcCCChHHHHHH
Q 004950 187 RNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAA 266 (722)
Q Consensus 187 ~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~~p~~L~~vL~~ 266 (722)
..|..+ +.|..+....|.+. ...-.++..+.. ..++.+++|.+.+.-++..|+... +|+.+..++..
T Consensus 232 ~EW~Qi----~IL~lL~~y~P~~~-----~e~~~il~~l~~--~Lq~~N~AVVl~Aik~il~l~~~~--~~~~~~~~~~r 298 (746)
T PTZ00429 232 NEWGQL----YILELLAAQRPSDK-----ESAETLLTRVLP--RMSHQNPAVVMGAIKVVANLASRC--SQELIERCTVR 298 (746)
T ss_pred ChHHHH----HHHHHHHhcCCCCc-----HHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHhcCcC--CHHHHHHHHHH
Confidence 479987 55666666655431 223345555543 234567899999999999887664 34455544322
Q ss_pred hccc-cCCCCCCchhHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhhhhhhccCCcccccCCCCchhhHHHHHHHHHHc
Q 004950 267 FLDE-RGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIG 345 (722)
Q Consensus 267 ~l~~-~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L~~~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~L~Eaig~Lis 345 (722)
+-.+ --+.++++.+|..+..-+..+++.....+.+++..+...+.|-..+ +..=.|.+-.|+.
T Consensus 299 l~~pLv~L~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yI----------------K~~KLeIL~~Lan 362 (746)
T PTZ00429 299 VNTALLTLSRRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFV----------------KLEKLRLLLKLVT 362 (746)
T ss_pred HHHHHHHhhCCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHH----------------HHHHHHHHHHHcC
Confidence 2100 0223455668877755555555544333334443333333221111 1122223333322
Q ss_pred cCCCChhhhHHHHHHhHHHHHHHHHHHHHhhhccCCchhhhHHHhHHHHHHHHHHhhhccCCCccCCCcchHHHHHHHHH
Q 004950 346 MEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTL 425 (722)
Q Consensus 346 ~~~~~~e~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~lakgf~~~~~~~~~~~~~~~~~~~~ 425 (722)
+++... ++..+....... |. . -...++.+||+++--|+ .....++
T Consensus 363 -----e~Nv~~--------IL~EL~eYa~d~----D~---e---f~r~aIrAIg~lA~k~~------------~~a~~cV 407 (746)
T PTZ00429 363 -----PSVAPE--------ILKELAEYASGV----DM---V---FVVEVVRAIASLAIKVD------------SVAPDCA 407 (746)
T ss_pred -----cccHHH--------HHHHHHHHhhcC----CH---H---HHHHHHHHHHHHHHhCh------------HHHHHHH
Confidence 222222 234444443211 11 1 14578899999886554 2344555
Q ss_pred HHHHHHHhcCCCChhHHhHHHHHHHHHHHhcCcccccchHHHHHHHH-hcC-ChhhHHHHHHHHHHHHHHHhhhHHHHHH
Q 004950 426 DVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLL-AES-EPKEMAGFLVLLNQLICKFNTLVHDILD 503 (722)
Q Consensus 426 ~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~lg~~v~p~lp~li~~ll-~~~-~~~~~~~fL~~~~qli~~f~~~~~~~l~ 503 (722)
+.++..++. +...+.| +...++.+++...... .++.++..+. ... ++.--..++|++|+..+.-.+ +..++.
T Consensus 408 ~~Ll~ll~~--~~~~v~e-~i~vik~IlrkyP~~~--il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~-a~~~L~ 481 (746)
T PTZ00429 408 NLLLQIVDR--RPELLPQ-VVTAAKDIVRKYPELL--MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN-GKDIIQ 481 (746)
T ss_pred HHHHHHhcC--CchhHHH-HHHHHHHHHHHCccHH--HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh-HHHHHH
Confidence 666666652 2233444 5666777777654321 3444444331 122 223345678999987664432 322222
Q ss_pred hhhHHHHHHHHhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeeecCCCCcCChHHHHHHHH-HhhcCC
Q 004950 504 EVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLL-YTSCNH 582 (722)
Q Consensus 504 ~ll~~l~~~v~~~l~~~~~~~~p~~~~d~~r~~~~l~r~y~~fl~~i~~~~~~~vl~s~~~~~~l~~~l~~l~-~~~~~~ 582 (722)
.++. .+..+ + .+++-..++....+..+.+. ..+..+..++ .++.+.
T Consensus 482 ~~i~-------~f~~E------~----------~~VqlqlLta~vKlfl~~p~----------~~~~~l~~vL~~~t~~~ 528 (746)
T PTZ00429 482 RFID-------TIMEH------E----------QRVQLAILSAAVKMFLRDPQ----------GMEPQLNRVLETVTTHS 528 (746)
T ss_pred HHHh-------hhccC------C----------HHHHHHHHHHHHHHHhcCcH----------HHHHHHHHHHHHHHhcC
Confidence 2111 11111 1 12555555555555544432 1233455455 334566
Q ss_pred CchHHHHHHHHHHHHH
Q 004950 583 KDYLVRKACVQIFIRL 598 (722)
Q Consensus 583 ~d~~~~k~a~~~l~~l 598 (722)
.||.++.-|+-+|+-+
T Consensus 529 ~d~DVRDRA~~Y~rLL 544 (746)
T PTZ00429 529 DDPDVRDRAFAYWRLL 544 (746)
T ss_pred CChhHHHHHHHHHHHH
Confidence 7888888888877643
No 44
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=92.56 E-value=2.3 Score=51.56 Aligned_cols=87 Identities=18% Similarity=0.261 Sum_probs=60.6
Q ss_pred ccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhhc--CCChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHH
Q 004950 216 GHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEH--TQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVK 293 (722)
Q Consensus 216 ~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~~--p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k 293 (722)
.-|+.++..| ++.-+..|-+|||.|+--+-|+-.+ .+||-| .+. .|+.++.+.|--+|-+.|+-+||
T Consensus 617 ~iLshLiTfL------NDkDw~LR~aFfdsI~gvsi~VG~rs~seyllP---Ll~--Q~ltD~EE~Viv~aL~~ls~Lik 685 (1431)
T KOG1240|consen 617 VILSHLITFL------NDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLP---LLQ--QGLTDGEEAVIVSALGSLSILIK 685 (1431)
T ss_pred chHHHHHHHh------cCccHHHHHHHHhhccceEEEEeeeeHHHHHHH---HHH--HhccCcchhhHHHHHHHHHHHHH
Confidence 4566666554 3345789999999999665555545 455544 444 78889999999999888888877
Q ss_pred Hhhccc-hHHHHHHHHHhhhhhh
Q 004950 294 LLKAKL-VPFIENILQSLQDTIA 315 (722)
Q Consensus 294 ~~r~~L-~~~~~~il~~l~~ll~ 315 (722)
. ..+ .+++-+|++-.-++|.
T Consensus 686 ~--~ll~K~~v~~i~~~v~PlL~ 706 (1431)
T KOG1240|consen 686 L--GLLRKPAVKDILQDVLPLLC 706 (1431)
T ss_pred h--cccchHHHHHHHHhhhhhee
Confidence 4 122 3677788888877774
No 45
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=92.44 E-value=13 Score=42.60 Aligned_cols=245 Identities=11% Similarity=0.157 Sum_probs=118.8
Q ss_pred HHHHHHhhhccCCCccCCCcchHHHHHHHHHHHHHHHHhcCCCChhHHhHHHHHHHHHHHhcCcccccchHHHHHHHHhc
Q 004950 395 IMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAE 474 (722)
Q Consensus 395 i~~l~~lakgf~~~~~~~~~~~~~~~~~~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~lg~~v~p~lp~li~~ll~~ 474 (722)
-..|.++.|-|++ ...++++.++.+++ ..+..||-.+..-+-.++..- --+++.+++.|..-
T Consensus 43 aq~I~kffk~FP~------------l~~~Ai~a~~DLcE--Ded~~iR~~aik~lp~~ck~~----~~~v~kvaDvL~Ql 104 (556)
T PF05918_consen 43 AQFIPKFFKHFPD------------LQEEAINAQLDLCE--DEDVQIRKQAIKGLPQLCKDN----PEHVSKVADVLVQL 104 (556)
T ss_dssp HHHHHHHHCC-GG------------GHHHHHHHHHHHHT---SSHHHHHHHHHHGGGG--T------T-HHHHHHHHHHH
T ss_pred HHHHHHHHhhChh------------hHHHHHHHHHHHHh--cccHHHHHHHHHhHHHHHHhH----HHHHhHHHHHHHHH
Confidence 3446777787774 45678889999998 888889888776665555442 23566666655544
Q ss_pred CChhhHHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Q 004950 475 SEPKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHD 554 (722)
Q Consensus 475 ~~~~~~~~fL~~~~qli~~f~~~~~~~l~~ll~~l~~~v~~~l~~~~~~~~p~~~~d~~r~~~~l~r~y~~fl~~i~~~~ 554 (722)
..+.+-.++-.+=+.++.-++.+-...|.. ++.++.+ +.+.+|. +++-.+.|+..-+..-
T Consensus 105 L~tdd~~E~~~v~~sL~~ll~~d~k~tL~~----lf~~i~~----------~~~~de~------~Re~~lkFl~~kl~~l 164 (556)
T PF05918_consen 105 LQTDDPVELDAVKNSLMSLLKQDPKGTLTG----LFSQIES----------SKSGDEQ------VRERALKFLREKLKPL 164 (556)
T ss_dssp TT---HHHHHHHHHHHHHHHHH-HHHHHHH----HHHHHH-------------HS-HH------HHHHHHHHHHHHGGGS
T ss_pred HhcccHHHHHHHHHHHHHHHhcCcHHHHHH----HHHHHHh----------cccCchH------HHHHHHHHHHHHHhhC
Confidence 444444555555566666666654443333 3333331 1122343 5566788887776654
Q ss_pred CCeeecCCCCcCChHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhCCCCCCCCchhHHHHHHHhhhhhhhhhcccC
Q 004950 555 LSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDWCARPFVEEKVPGFQSFMIEAFAMNCCLYSVLD 634 (722)
Q Consensus 555 ~~~vl~s~~~~~~l~~~l~~l~~~~~~~~d~~~~k~a~~~l~~li~~~~~~~~~~~~~~gf~~fl~~~~~~~~~~~~~~~ 634 (722)
...++.+.. -.+.++...+.-++.---...-+..+.+|..+= .|++. .+++|..+ +++-+.. ++-+.
T Consensus 165 ~~~~~~p~~---E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk-~~~~~----~t~~g~qe-Lv~ii~e----Qa~Ld 231 (556)
T PF05918_consen 165 KPELLTPQK---EMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLK-IYGGK----QTIEGRQE-LVDIIEE----QADLD 231 (556)
T ss_dssp -TTTS---H---HHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSG-G---G----SSHHHHHH-HHHHHHH----HHTTT
T ss_pred cHHHhhchH---HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCc-ccccc----CChHHHHH-HHHHHHH----HhccC
Confidence 444544211 134444433332332111233333333333221 22222 23455444 5553322 22233
Q ss_pred CCCCCCchhHHHHHHHHHHHHHH---HHHH--hhhHHHHHHHhccCCCC-CCCHHHHHHHHHHhc
Q 004950 635 KSFEFGDANTLVLFGEIVLAQKV---MYEK--FGNDFLVHFVTKGFPSA-HCPPDLAEQYCQKLQ 693 (722)
Q Consensus 635 ~~F~~~Da~~~~~l~eia~~l~~---l~~~--~g~e~~~~l~~~~lP~~-~~~~~~~~~f~~~l~ 693 (722)
..|+..|..+. +-+..+++. +..+ .+..|+.|+.+..||.. .++++.+-++++.+.
T Consensus 232 ~~f~~sD~e~I---drli~C~~~Alp~fs~~v~Sskfv~y~~~kvlP~l~~l~e~~kl~lLk~lA 293 (556)
T PF05918_consen 232 QPFDPSDPESI---DRLISCLRQALPFFSRGVSSSKFVNYMCEKVLPKLSDLPEDRKLDLLKLLA 293 (556)
T ss_dssp S---SSSHHHH---HHHHHHHHHHGGG-BTTB--HHHHHHHHHHTCCCTT-----HHHHHHHHHH
T ss_pred CCCCCcCHHHH---HHHHHHHHHhhHHhcCCCChHHHHHHHHHHhcCChhhCChHHHHHHHHHHH
Confidence 45888887743 334444443 2222 24569999998899986 567788889998884
No 46
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=92.35 E-value=12 Score=43.41 Aligned_cols=180 Identities=10% Similarity=0.112 Sum_probs=97.2
Q ss_pred HHHHHHHhhhhhhhhccCCcccccCCCCchhhHHHHHHHHHHccCCCChhhhHHHHHHhHHHHHHHHHHHHHhhhccCCc
Q 004950 303 IENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPE 382 (722)
Q Consensus 303 ~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~L~Eaig~Lis~~~~~~e~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~ 382 (722)
+..|+.++.++|...+..++.-++....+..++++-+|-.+|+..+ |. ...++-++-|++.-. .+ +
T Consensus 406 fqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~s-p~---an~me~fiv~hv~P~---f~---s---- 471 (970)
T COG5656 406 FQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMS-PA---ANVMEYFIVNHVIPA---FR---S---- 471 (970)
T ss_pred hhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCc-hH---HHHHHHHHHHHhhHh---hc---C----
Confidence 6777778877775443222221111233556777777777666532 22 223333333332211 10 0
Q ss_pred hhhhHHHhHHHHHHHHHHhhhccCCCccCCCcchHHHHHHHHHHHHHHHHhcCCCChhHHhHHHHHHHHHHHhc--Cccc
Q 004950 383 ESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTL--GASV 460 (722)
Q Consensus 383 ~~~~~~~~~~~~i~~l~~lakgf~~~~~~~~~~~~~~~~~~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~l--g~~v 460 (722)
....-.+++...++++...|++. ....++.+.+..++.. ++-+.-.++| -+++-++... .+.+
T Consensus 472 ---~ygfL~Srace~is~~eeDfkd~----------~ill~aye~t~ncl~n-n~lpv~ieAa-lAlq~fi~~~q~h~k~ 536 (970)
T COG5656 472 ---NYGFLKSRACEFISTIEEDFKDN----------GILLEAYENTHNCLKN-NHLPVMIEAA-LALQFFIFNEQSHEKF 536 (970)
T ss_pred ---cccchHHHHHHHHHHHHHhcccc----------hHHHHHHHHHHHHHhc-CCcchhhhHH-HHHHHHHhchhhhHHH
Confidence 01111356666777777777752 3566788888888886 4444444544 3344444432 3456
Q ss_pred ccchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHH
Q 004950 461 FPYLPKALEQLLAESEPKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAG 511 (722)
Q Consensus 461 ~p~lp~li~~ll~~~~~~~~~~fL~~~~qli~~f~~~~~~~l~~ll~~l~~ 511 (722)
..++|..++.|+.-...-++.-.-.+...+|..|.++..|+-.++...+++
T Consensus 537 sahVp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~ 587 (970)
T COG5656 537 SAHVPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVR 587 (970)
T ss_pred HhhhhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHH
Confidence 788999999998754332222122344567777777766665555555555
No 47
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=92.32 E-value=0.086 Score=40.33 Aligned_cols=54 Identities=17% Similarity=0.172 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHhhHHHHhh-cCCChHHHHHHhccccCCCCCCchhHHHHHHHHHHH
Q 004950 236 RLVALVYLETVTRYMKFIQE-HTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRV 291 (722)
Q Consensus 236 p~V~~~~~e~i~RY~~~~~~-~p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~ 291 (722)
|.||..+.+.+|+-.+--.. -..+++.+++.+. .++.++++.||..||+++.++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~--~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALI--PLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHH--HHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHH--HHHcCCCHHHHHHHHHHHhcC
Confidence 67999999999973311111 1237888898888 788888999999999998753
No 48
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=91.25 E-value=0.59 Score=41.33 Aligned_cols=95 Identities=15% Similarity=0.130 Sum_probs=64.2
Q ss_pred CChhhHHHHHHHHHHhcccCchhhhh-cccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhh------cCCC
Q 004950 187 RNVEEVEAALTLLYALGESMSEEAMR-TGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQE------HTQY 259 (722)
Q Consensus 187 ~~W~~~EaaL~~l~~~gE~i~~~~~~-~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~------~p~~ 259 (722)
.+|...+.++.++..++...+..... -..+.++.++..+- ++++.|+..+++++++.+..... +...
T Consensus 19 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~ 92 (120)
T cd00020 19 SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK------SEDEEVVKAALWALRNLAAGPEDNKLIVLEAGG 92 (120)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHh------CCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCC
Confidence 45999999999999999875432111 01245555555443 25678999999999999865532 2334
Q ss_pred hHHHHHHhccccCCCCCCchhHHHHHHHHHHHHH
Q 004950 260 IPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVK 293 (722)
Q Consensus 260 L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k 293 (722)
++.++..+- +.+.+++..++++|..+|.
T Consensus 93 l~~l~~~l~------~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 93 VPKLVNLLD------SSNEDIQKNATGALSNLAS 120 (120)
T ss_pred hHHHHHHHh------cCCHHHHHHHHHHHHHhhC
Confidence 555554443 3467899999999998873
No 49
>PTZ00429 beta-adaptin; Provisional
Probab=88.14 E-value=67 Score=38.59 Aligned_cols=61 Identities=13% Similarity=0.123 Sum_probs=51.1
Q ss_pred CCCChhHHHHHHHHHHHhhHHHHhhcCCChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhhcc
Q 004950 231 PCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAK 298 (722)
Q Consensus 231 ~~~~hp~V~~~~~e~i~RY~~~~~~~p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~ 298 (722)
..+++|.||-.++-++++ -+.|+.++.++..+. +++.++++-||..|+.++.++-+.....
T Consensus 114 l~d~Np~IRaLALRtLs~-----Ir~~~i~e~l~~~lk--k~L~D~~pYVRKtAalai~Kly~~~pel 174 (746)
T PTZ00429 114 TTNSSPVVRALAVRTMMC-----IRVSSVLEYTLEPLR--RAVADPDPYVRKTAAMGLGKLFHDDMQL 174 (746)
T ss_pred cCCCCHHHHHHHHHHHHc-----CCcHHHHHHHHHHHH--HHhcCCCHHHHHHHHHHHHHHHhhCccc
Confidence 345789999999998886 345888888888888 8999999999999999999988765543
No 50
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=87.67 E-value=4.1 Score=41.07 Aligned_cols=143 Identities=14% Similarity=0.180 Sum_probs=80.7
Q ss_pred CCChhhHHHHHHHHHHhcccC-chhhhhcccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhhc-CCChHHH
Q 004950 186 DRNVEEVEAALTLLYALGESM-SEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEH-TQYIPVV 263 (722)
Q Consensus 186 ~~~W~~~EaaL~~l~~~gE~i-~~~~~~~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~~-p~~L~~v 263 (722)
+.+|.....||--++.+..+- +......-...+.+++..+... +. .....|..+++.++.+.+.-+..+ ..+++.+
T Consensus 18 ~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~-l~-d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~ 95 (228)
T PF12348_consen 18 ESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQ-LS-DLRSKVSKTACQLLSDLARQLGSHFEPYADIL 95 (228)
T ss_dssp -SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH--S--HH---HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHH-Hh-hhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 478999999999999887764 2111111112333333444442 22 345679999999999999988876 3457778
Q ss_pred HHHhccccCCCCCCchhHHHHHHHHHHHHHHhhccchHHHHHH-HHHhhhhhhhhccCCcccccCCCCchhhHHHHHHHH
Q 004950 264 LAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENI-LQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGL 342 (722)
Q Consensus 264 L~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L~~~~~~i-l~~l~~ll~~~~~~~~~~~~~~~~~d~l~L~Eaig~ 342 (722)
++.++. -+.+++.-++.+|..++..+|+.|. +.+.+ +..+.....-+ ++.-+....+.+..
T Consensus 96 l~~Ll~--~~~~~~~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~~K-----------n~~vR~~~~~~l~~ 157 (228)
T PF12348_consen 96 LPPLLK--KLGDSKKFIREAANNALDAIIESCS-----YSPKILLEILSQGLKSK-----------NPQVREECAEWLAI 157 (228)
T ss_dssp HHHHHH--GGG---HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT-S------------HHHHHHHHHHHHH
T ss_pred HHHHHH--HHccccHHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHhCC-----------CHHHHHHHHHHHHH
Confidence 888873 4445677899999999999999766 11122 22222222111 23446677788888
Q ss_pred HHccCC
Q 004950 343 LIGMED 348 (722)
Q Consensus 343 Lis~~~ 348 (722)
++...+
T Consensus 158 ~l~~~~ 163 (228)
T PF12348_consen 158 ILEKWG 163 (228)
T ss_dssp HHTT--
T ss_pred HHHHcc
Confidence 887654
No 51
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.66 E-value=67 Score=38.02 Aligned_cols=293 Identities=15% Similarity=0.194 Sum_probs=159.2
Q ss_pred HHHHHHHHHHHHc-ccCcccccCCccCCC---CChhHH-HHHH-HHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHhcCC
Q 004950 111 HAGQILEVILTQI-RYDPMYRNNLDVLDK---IGIEEE-DRMV-EYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFS 184 (722)
Q Consensus 111 ~l~~Ll~~li~km-~yp~~~~~~~d~~~~---~~~ede-~~F~-e~Rk~l~~ll~~i~~l~~~l~l~~i~~~l~~~l~~~ 184 (722)
-+..|++.++.|. .--+++- ++|.++ |.-|+. .+.+ ..|-+.-.+++++..-..++....+...+.++.+..
T Consensus 370 rIt~lcd~Lvt~YflLt~~eL--EeW~~dPE~~~~Eq~~~dwey~lRPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~ 447 (978)
T KOG1993|consen 370 RITNLCDLLVTHYFLLTEEEL--EEWTQDPEGWVLEQSGGDWEYNLRPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQ 447 (978)
T ss_pred HHHHHHHHHHHHHHhcCHHHH--HHHhcChHHhhhhcccccceeccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcC
Confidence 4677888888887 3333221 245322 211111 1111 278888888888888777777777777776665432
Q ss_pred CCCChhhHHHHH-----HHH-----HHhcccCchhhhhcccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHh
Q 004950 185 ADRNVEEVEAAL-----TLL-----YALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQ 254 (722)
Q Consensus 185 ~~~~W~~~EaaL-----~~l-----~~~gE~i~~~~~~~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~ 254 (722)
+...-.++-+.| |.- |.+.+.++=.. =.-+.+++-+-. ..+ .-+.+|.-..+++|-+.. ++
T Consensus 448 ~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~~dF~~-----Wl~~~llpEl~~-~~~--~~RiiRRRVa~ilg~Wvs-vq 518 (978)
T KOG1993|consen 448 SPTVTEDLTALLLKDAIYAAFGLAAYELSNILDFDK-----WLQEALLPELAN-DHG--NSRIIRRRVAWILGQWVS-VQ 518 (978)
T ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHH-----HHHHhhCHHhhh-ccc--chhHHHHHHHHHHhhhhh-ee
Confidence 222333444333 222 22223332110 001112222211 112 223466666777776555 33
Q ss_pred hcCCChHHHHHHhccccCCCCC-CchhHHHHHHHHHHHHHHh---hccchHHHHHHHHHhhhhhhhhccCCcccccCCCC
Q 004950 255 EHTQYIPVVLAAFLDERGIHHP-NVHVSRRASYLFMRVVKLL---KAKLVPFIENILQSLQDTIARFTSMNYASKELSGS 330 (722)
Q Consensus 255 ~~p~~L~~vL~~~l~~~Gl~~~-~~~V~~ra~ylf~r~~k~~---r~~L~~~~~~il~~l~~ll~~~~~~~~~~~~~~~~ 330 (722)
.--+..|.+-.+|+ .=+++. +.-||-.++-.++-.+.+- ...-.||++.+...+-.++.... ..
T Consensus 519 ~~~e~k~l~Y~a~l--nLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~----------e~ 586 (978)
T KOG1993|consen 519 QKLELKPLLYCAFL--NLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVE----------EC 586 (978)
T ss_pred chHhHHHHHHHHHH--HhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHh----------hh
Confidence 34466777777887 555554 6778888888888888773 36668999999999988875332 46
Q ss_pred chhhHHHHHHHHHHccCCCChhhhHHHHHHhHHHHHHHHHHHHHhhhccCCchhh---hHHHhHHHHHHHHHHhhhccCC
Q 004950 331 EDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEEST---AKFANIQQIIMAINALSKGFNE 407 (722)
Q Consensus 331 ~d~l~L~Eaig~Lis~~~~~~e~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~i~~l~~lakgf~~ 407 (722)
|.+.++.-.+|.+|...+ | .+.|+...+-+.+..-=....+++. +.+..+++...++|.-++-+.+
T Consensus 587 Dtk~~VL~~ls~lI~r~~---e--------~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~ 655 (978)
T KOG1993|consen 587 DTKTSVLNLLSTLIERVS---E--------HIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYP 655 (978)
T ss_pred hhHHHHHHHHHHHHHHHH---H--------hhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchH
Confidence 778999999999998632 2 2334444444443332111112221 1223378888888876666554
Q ss_pred Cc-------cCCCcchHHHHHHHHHHHHHHHHhcCCC
Q 004950 408 RL-------VTSSRPAIGLMFKQTLDVLLQILVVFPK 437 (722)
Q Consensus 408 ~~-------~~~~~~~~~~~~~~~~~vi~~~l~~~~~ 437 (722)
.. +..++|+-+-..+..++.=..++++++.
T Consensus 656 fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~ 692 (978)
T KOG1993|consen 656 FLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQK 692 (978)
T ss_pred HHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccc
Confidence 21 1111233333444555555555655433
No 52
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=87.53 E-value=1 Score=34.25 Aligned_cols=54 Identities=24% Similarity=0.125 Sum_probs=42.2
Q ss_pred hhhHHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHh
Q 004950 189 VEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTR 248 (722)
Q Consensus 189 W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~R 248 (722)
|+..++|+.+|+.+++..++.. ...++++++.|.. ...++++.||..+++.+++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~----~~~~~~~~~~L~~--~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELL----QPYLPELLPALIP--LLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHH----HHHHHHHHHHHHH--HTTSSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHH----HHHHHHHHHHHHH--HHcCCCHHHHHHHHHHHhc
Confidence 8888999999988888776542 3577788888775 3456778999999999885
No 53
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=86.21 E-value=61 Score=36.08 Aligned_cols=202 Identities=15% Similarity=0.195 Sum_probs=126.2
Q ss_pred ChhHHHHHHHHHHHhhHHHHhhcCCChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhh
Q 004950 234 SNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDT 313 (722)
Q Consensus 234 ~hp~V~~~~~e~i~RY~~~~~~~p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L~~~~~~il~~l~~l 313 (722)
.++.+|..+...++-...=+. ..+.+..+|..+.+.. -.......+.++-..+.-+.|.+--.-.|...++++.+-.+
T Consensus 202 ~~~~~~~~~~~~la~LvNK~~-~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~l 279 (415)
T PF12460_consen 202 EDEFSRLAALQLLASLVNKWP-DDDDLDEFLDSLLQSI-SSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLEL 279 (415)
T ss_pred CChHHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHhhh-cccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 347888888887764432211 2347888888887433 12344556666755666667765444456666666666555
Q ss_pred hhhhccCCcccccCCCCchhhHHHHHHHHHHccCC-C-C----hh----hhHHHHHHhHHHHHHHHHHHHHhhhccCCch
Q 004950 314 IARFTSMNYASKELSGSEDGSHIFEAIGLLIGMED-V-P----PE----KQSDYLSSLLTPLCQQVQTMLLDAKMLNPEE 383 (722)
Q Consensus 314 l~~~~~~~~~~~~~~~~~d~l~L~Eaig~Lis~~~-~-~----~e----~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~ 383 (722)
+.-. +-.-..-++.|.+++-.+ . . .. =+.+.+..+++++++.++..- ++
T Consensus 280 L~~~-------------~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~-------~~- 338 (415)
T PF12460_consen 280 LSSP-------------ELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEAD-------DE- 338 (415)
T ss_pred hCCh-------------hhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcC-------hh-
Confidence 5311 012233456666666411 0 0 01 145666666666655554321 11
Q ss_pred hhhHHHhHHHHHHHHHHhhhccCCCccCCCcchHHHHHHHHHHHHHHHHhcCCCChhHHhHHHHHHHHHHHhcCcccccc
Q 004950 384 STAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPY 463 (722)
Q Consensus 384 ~~~~~~~~~~~i~~l~~lakgf~~~~~~~~~~~~~~~~~~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~lg~~v~p~ 463 (722)
.-...+.|++.+-|..+. +-...-+.+++|++++++. -.+.+|+.++-..+..++.--.+.+.++
T Consensus 339 ------~k~~yL~ALs~ll~~vP~-------~vl~~~l~~LlPLLlqsL~--~~~~~v~~s~L~tL~~~l~~~~~~i~~h 403 (415)
T PF12460_consen 339 ------IKSNYLTALSHLLKNVPK-------SVLLPELPTLLPLLLQSLS--LPDADVLLSSLETLKMILEEAPELISEH 403 (415)
T ss_pred ------hHHHHHHHHHHHHhhCCH-------HHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 124567788887776652 2245567789999999997 4556799999999999999988888899
Q ss_pred hHHHHHHHHh
Q 004950 464 LPKALEQLLA 473 (722)
Q Consensus 464 lp~li~~ll~ 473 (722)
+..+++.|+.
T Consensus 404 l~sLI~~LL~ 413 (415)
T PF12460_consen 404 LSSLIPRLLK 413 (415)
T ss_pred HHHHHHHHHh
Confidence 9999998875
No 54
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=85.12 E-value=31 Score=39.04 Aligned_cols=197 Identities=10% Similarity=0.062 Sum_probs=105.9
Q ss_pred HHHHHHHHHhhhccCCCccCCCcchHHHHHHHHHHHHHHHHhcCCCChhHHhHHHHHHHHHHHhcCcccccchHHHHHHH
Q 004950 392 QQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQL 471 (722)
Q Consensus 392 ~~~i~~l~~lakgf~~~~~~~~~~~~~~~~~~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~lg~~v~p~lp~li~~l 471 (722)
.+-+.++..+++....+. . .-..++|......++. ....++|.++..++...+..-+......=-.+...+
T Consensus 5 ~~R~~a~~~l~~~i~~~~-------~-~~i~~iW~~~~DLi~~-~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I 75 (464)
T PF11864_consen 5 SERIKAAEELCESIQKYP-------L-SSIEEIWYAAKDLIDP-NQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDI 75 (464)
T ss_pred HHHHHHHHHHHHHHHhCC-------c-hHHHHHHHHHhhhcCC-CCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHH
Confidence 444555555555544432 1 3455688888888763 455788998888888888876553222112222222
Q ss_pred HhcCChhhHHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHhhcc---------CCCCCCCCCCCCHHHHHHHHHHHH
Q 004950 472 LAESEPKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIP---------RDAFPSGPGTNTEEIREVQELQRT 542 (722)
Q Consensus 472 l~~~~~~~~~~fL~~~~qli~~f~~~~~~~l~~ll~~l~~~v~~~l~---------~~~~~~~p~~~~d~~r~~~~l~r~ 542 (722)
-......++..++..+..+...-+ ++..+-.+..+.+..|+-..++ ... ...+....-...........
T Consensus 76 ~~~~~~~d~~~~l~aL~~LT~~Gr-di~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~-~~~~~~~~~~~~~~~~~l~~ 153 (464)
T PF11864_consen 76 SDPSNDDDFDLRLEALIALTDNGR-DIDFFEYEIGPFLLSWLEPSYQAARSARRKAKKS-SSSKSKGLSNLDNEESNLSD 153 (464)
T ss_pred hcCCCchhHHHHHHHHHHHHcCCc-CchhcccchHHHHHHHHHHHHHHHHHHHHHhhcc-ccccccccccccchhhhHHH
Confidence 222233456666666666654433 2333333444444444444431 000 00011110000011226678
Q ss_pred HHHHHHHHHhcCCCeeecCCCCcCChHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhCC
Q 004950 543 LYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDWCAR 605 (722)
Q Consensus 543 y~~fl~~i~~~~~~~vl~s~~~~~~l~~~l~~l~~~~~~~~d~~~~k~a~~~l~~li~~~~~~ 605 (722)
+|.|+..+++.+.. . +. ...+..++..++..+..-..+...+.|+.++--+| .+|.-
T Consensus 154 ll~~l~nviKfn~~-~-l~---e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii-~y~~i 210 (464)
T PF11864_consen 154 LLQFLVNVIKFNFN-Y-LD---EDEISSLVDQICTICKSTSSEDDIEACLSVLDAII-TYGDI 210 (464)
T ss_pred HHHHHHHHHhcCCC-C-CC---HHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHH-HcCcC
Confidence 99999999998753 2 11 12355566666654445566667799999999888 56643
No 55
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=84.86 E-value=5.6 Score=33.10 Aligned_cols=77 Identities=18% Similarity=0.237 Sum_probs=51.8
Q ss_pred CCChhhHHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhhcCCChHHHHH
Q 004950 186 DRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLA 265 (722)
Q Consensus 186 ~~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~~p~~L~~vL~ 265 (722)
+.+|.....++.+++.+++. ..++.++..+ .+++|.||.++.+.++++. .++.++.+..
T Consensus 11 ~~~~~vr~~a~~~L~~~~~~----------~~~~~L~~~l------~d~~~~vr~~a~~aL~~i~-----~~~~~~~L~~ 69 (88)
T PF13646_consen 11 DPDPQVRAEAARALGELGDP----------EAIPALIELL------KDEDPMVRRAAARALGRIG-----DPEAIPALIK 69 (88)
T ss_dssp SSSHHHHHHHHHHHHCCTHH----------HHHHHHHHHH------TSSSHHHHHHHHHHHHCCH-----HHHTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCH----------hHHHHHHHHH------cCCCHHHHHHHHHHHHHhC-----CHHHHHHHHH
Confidence 37899999999888733321 2344444443 4478899999999999985 4666766666
Q ss_pred HhccccCCCCCCchhHHHHHHHH
Q 004950 266 AFLDERGIHHPNVHVSRRASYLF 288 (722)
Q Consensus 266 ~~l~~~Gl~~~~~~V~~ra~ylf 288 (722)
.+-+ +++..||..|..++
T Consensus 70 ~l~~-----~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 70 LLQD-----DDDEVVREAAAEAL 87 (88)
T ss_dssp HHTC------SSHHHHHHHHHHH
T ss_pred HHcC-----CCcHHHHHHHHhhc
Confidence 5542 24566787776665
No 56
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=84.75 E-value=8.9 Score=33.90 Aligned_cols=86 Identities=23% Similarity=0.281 Sum_probs=55.3
Q ss_pred HHHHHHHHHhcCCCChhH--HhHHHHHHHHHHHhcCcccccchHHHHHHHHhcCChhhHH-HHHHHHHHHHHHHhhh-HH
Q 004950 424 TLDVLLQILVVFPKVEPL--RCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEPKEMA-GFLVLLNQLICKFNTL-VH 499 (722)
Q Consensus 424 ~~~vi~~~l~~~~~~~~V--re~~~~~~~r~v~~lg~~v~p~lp~li~~ll~~~~~~~~~-~fL~~~~qli~~f~~~-~~ 499 (722)
++..+...+....+...+ +.++.+.+..|+...|+++..++|+++.+|.+..+.+++. ..+..-+.++....++ +.
T Consensus 12 il~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L~~~~l~ 91 (107)
T smart00802 12 ILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIPELRSLALRCWHVLIKTLKEEELG 91 (107)
T ss_pred HHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhCCHHHHH
Confidence 444444445444433444 6677788899999999999999999999998887766542 2234444566655543 55
Q ss_pred HHHHhhhHHH
Q 004950 500 DILDEVFPAI 509 (722)
Q Consensus 500 ~~l~~ll~~l 509 (722)
+++++.+..+
T Consensus 92 ~ll~~~~~~i 101 (107)
T smart00802 92 PLLDQIFAAI 101 (107)
T ss_pred HHHHHHHHHH
Confidence 5555544433
No 57
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=84.35 E-value=2.4 Score=41.17 Aligned_cols=55 Identities=7% Similarity=0.073 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHHHhhHHHHhhcCCChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHH
Q 004950 235 NRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKL 294 (722)
Q Consensus 235 hp~V~~~~~e~i~RY~~~~~~~p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~ 294 (722)
||.||-..+.++| +...++|..+.+.++.+. .++.++++.||..|...+.++...
T Consensus 1 ~~~vR~n~i~~l~---DL~~r~~~~ve~~~~~l~--~~L~D~~~~VR~~al~~Ls~Li~~ 55 (178)
T PF12717_consen 1 DPSVRNNAIIALG---DLCIRYPNLVEPYLPNLY--KCLRDEDPLVRKTALLVLSHLILE 55 (178)
T ss_pred CHHHHHHHHHHHH---HHHHhCcHHHHhHHHHHH--HHHCCCCHHHHHHHHHHHHHHHHc
Confidence 6788877766655 555667888888888888 788999999999998888888764
No 58
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=83.89 E-value=77 Score=39.31 Aligned_cols=229 Identities=20% Similarity=0.220 Sum_probs=123.3
Q ss_pred HHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhh--------cCCChHHH
Q 004950 192 VEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQE--------HTQYIPVV 263 (722)
Q Consensus 192 ~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~--------~p~~L~~v 263 (722)
-=+||-++..++..+..| ..+..++++++. ...++-+.||-++++|+.+--.-... -||||-|-
T Consensus 440 K~~ALeLl~~lS~~i~de------~~LDRVlPY~v~--l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~ 511 (1431)
T KOG1240|consen 440 KLAALELLQELSTYIDDE------VKLDRVLPYFVH--LLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPH 511 (1431)
T ss_pred HHHHHHHHHHHhhhcchH------HHHhhhHHHHHH--HhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhh
Confidence 346788888888888765 346677777774 45667789999999999988776653 47999888
Q ss_pred HHHhccccCCCCCCchhHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhhhhhhc--cCCcccccC-CCCchhhHHHHHH
Q 004950 264 LAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFT--SMNYASKEL-SGSEDGSHIFEAI 340 (722)
Q Consensus 264 L~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L~~~~~~il~~l~~ll~~~~--~~~~~~~~~-~~~~d~l~L~Eai 340 (722)
|+-|+.+. .+..| |.||| .|-..|.--+-.+++.-|.+-..+. .++..+... ....+.--|-++|
T Consensus 512 L~~l~~d~----~~~~v--RiayA------snla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V 579 (1431)
T KOG1240|consen 512 LNHLLNDS----SAQIV--RIAYA------SNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTV 579 (1431)
T ss_pred hHhhhccC----cccee--hhhHH------hhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHH
Confidence 88887322 23333 34443 2333333333334444443222111 111111111 1223344566666
Q ss_pred HHHHccC--CCChhhhHHHHHHhHHHHHHHHHHHHHhhhccCCchhhhHHHhHHHHHHHHHHhh----hccCCCccCCCc
Q 004950 341 GLLIGME--DVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALS----KGFNERLVTSSR 414 (722)
Q Consensus 341 g~Lis~~--~~~~e~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~la----kgf~~~~~~~~~ 414 (722)
...++.. +.++--+..+|+. +.||+.-+-+.- + +| .-+.|.+.++.-== -+|=+.-+...-
T Consensus 580 ~~~v~sLlsd~~~~Vkr~Lle~-i~~LC~FFGk~k----s-ND-------~iLshLiTfLNDkDw~LR~aFfdsI~gvsi 646 (1431)
T KOG1240|consen 580 EQMVSSLLSDSPPIVKRALLES-IIPLCVFFGKEK----S-ND-------VILSHLITFLNDKDWRLRGAFFDSIVGVSI 646 (1431)
T ss_pred HHHHHHHHcCCchHHHHHHHHH-HHHHHHHhhhcc----c-cc-------chHHHHHHHhcCccHHHHHHHHhhccceEE
Confidence 6665532 2233345666677 677776664321 1 11 11455555543100 000000000000
Q ss_pred -chHHHHHHHHHHHHHHHHhcCCCChhHHhHHHHHHHHHHHh
Q 004950 415 -PAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDT 455 (722)
Q Consensus 415 -~~~~~~~~~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~ 455 (722)
-++..+=+=++|.+.+.+. ...+-|..+|-.+++-++..
T Consensus 647 ~VG~rs~seyllPLl~Q~lt--D~EE~Viv~aL~~ls~Lik~ 686 (1431)
T KOG1240|consen 647 FVGWRSVSEYLLPLLQQGLT--DGEEAVIVSALGSLSILIKL 686 (1431)
T ss_pred EEeeeeHHHHHHHHHHHhcc--CcchhhHHHHHHHHHHHHHh
Confidence 0111122336788888887 77788999999999988876
No 59
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.69 E-value=1e+02 Score=36.54 Aligned_cols=153 Identities=16% Similarity=0.148 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHHcccCcccccCCccCCCCChhHHHHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHhcCCCCC
Q 004950 108 QRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADR 187 (722)
Q Consensus 108 ~~~~l~~Ll~~li~km~yp~~~~~~~d~~~~~~~ede~~F~e~Rk~l~~ll~~i~~l~~~l~l~~i~~~l~~~l~~~~~~ 187 (722)
..+.+..++-..++|+.=|+.. -.||..+-.+--+|.++|+..- -+..+|...++. .
T Consensus 136 Rvp~IaPI~llAIk~~~~D~s~-------------------yVRk~AA~AIpKLYsLd~e~k~-qL~e~I~~LLaD---~ 192 (968)
T KOG1060|consen 136 RVPMIAPIMLLAIKKAVTDPSP-------------------YVRKTAAHAIPKLYSLDPEQKD-QLEEVIKKLLAD---R 192 (968)
T ss_pred chhhHHHHHHHHHHHHhcCCcH-------------------HHHHHHHHhhHHHhcCChhhHH-HHHHHHHHHhcC---C
Confidence 4556667777777877654431 2699999999999999988765 466777777754 2
Q ss_pred ChhhHHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhhcCC---------
Q 004950 188 NVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQ--------- 258 (722)
Q Consensus 188 ~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~~p~--------- 258 (722)
+--.+-+|++++ -|.||+.- ..+..=...+++. ++... .-=+...+.++.||++----.|.
T Consensus 193 splVvgsAv~AF---~evCPerl-----dLIHknyrklC~l-l~dvd-eWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n 262 (968)
T KOG1060|consen 193 SPLVVGSAVMAF---EEVCPERL-----DLIHKNYRKLCRL-LPDVD-EWGQVVLINMLTRYARHQLPDPTVVDSSLEDN 262 (968)
T ss_pred CCcchhHHHHHH---HHhchhHH-----HHhhHHHHHHHhh-ccchh-hhhHHHHHHHHHHHHHhcCCCccccccccccC
Confidence 334566776655 77777531 2233334444442 23221 12344678889999763221120
Q ss_pred -----------------ChHHHHHHhc--cccCCCCCCchhHHHHHHHHHHHHH
Q 004950 259 -----------------YIPVVLAAFL--DERGIHHPNVHVSRRASYLFMRVVK 293 (722)
Q Consensus 259 -----------------~L~~vL~~~l--~~~Gl~~~~~~V~~ra~ylf~r~~k 293 (722)
...+=+..|+ ...-+++.|+.|-.++|.+|..+.-
T Consensus 263 ~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP 316 (968)
T KOG1060|consen 263 GRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAP 316 (968)
T ss_pred cccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCC
Confidence 1111222222 0133456788888888888877654
No 60
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=83.47 E-value=60 Score=33.70 Aligned_cols=237 Identities=12% Similarity=0.161 Sum_probs=132.0
Q ss_pred CCChhHHhHHHHHHHHHHHhcCccccc--chHHHHHHHHhcCC-hhhHHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHH
Q 004950 436 PKVEPLRCKVTSFIHRMVDTLGASVFP--YLPKALEQLLAESE-PKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGR 512 (722)
Q Consensus 436 ~~~~~Vre~~~~~~~r~v~~lg~~v~p--~lp~li~~ll~~~~-~~~~~~fL~~~~qli~~f~~~~~~~l~~ll~~l~~~ 512 (722)
..+..+|+++..++...+..+.+..+. -+..+++-+.+..+ ...+...+.-+..++ +.+.--.+ ....+++.
T Consensus 10 sed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~-~~~~~~~~----~~~~i~~~ 84 (262)
T PF14500_consen 10 SEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALV-KMKNFSPE----SAVKILRS 84 (262)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHH-hCcCCChh----hHHHHHHH
Confidence 466889999999999999998876554 23334444444442 233444455556666 33321111 22334444
Q ss_pred HHhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeeecCCCCcCChHHHHHHHHHhhcCCCchHHHHHHH
Q 004950 513 IFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACV 592 (722)
Q Consensus 513 v~~~l~~~~~~~~p~~~~d~~r~~~~l~r~y~~fl~~i~~~~~~~vl~s~~~~~~l~~~l~~l~~~~~~~~d~~~~k~a~ 592 (722)
+++-.. +.+ ..+..+..+|.++..++.++...+ . ..=+.++..+++.+-..+||--...+|
T Consensus 85 l~~~~~-------~q~------~~q~~R~~~~~ll~~l~~~~~~~l--~----~~~~~fv~~~i~~~~gEkDPRnLl~~F 145 (262)
T PF14500_consen 85 LFQNVD-------VQS------LPQSTRYAVYQLLDSLLENHREAL--Q----SMGDDFVYGFIQLIDGEKDPRNLLLSF 145 (262)
T ss_pred HHHhCC-------hhh------hhHHHHHHHHHHHHHHHHHhHHHH--H----hchhHHHHHHHHHhccCCCHHHHHHHH
Confidence 443222 111 223378999999999999876544 1 122346667777667779998888999
Q ss_pred HHHHHHHHHhhCCCCCCCCchhHHHHHHHhhhhhhhhhcccCCCCCCCc--hhHHHHHHHHHHHHHHHHHHhh--hHH-H
Q 004950 593 QIFIRLIKDWCARPFVEEKVPGFQSFMIEAFAMNCCLYSVLDKSFEFGD--ANTLVLFGEIVLAQKVMYEKFG--NDF-L 667 (722)
Q Consensus 593 ~~l~~li~~~~~~~~~~~~~~gf~~fl~~~~~~~~~~~~~~~~~F~~~D--a~~~~~l~eia~~l~~l~~~~g--~e~-~ 667 (722)
.++..++..|.- +.+.+-+.+-+ .|-.+. ..+-+.+| +-++. ++...|+......+ +++ +
T Consensus 146 ~l~~~i~~~~~~--------~~~~e~lFd~~---~cYFPI-~F~pp~~dp~~IT~e---dLk~~L~~cl~s~~~fa~~~~ 210 (262)
T PF14500_consen 146 KLLKVILQEFDI--------SEFAEDLFDVF---SCYFPI-TFRPPPNDPYGITRE---DLKRALRNCLSSTPLFAPFAF 210 (262)
T ss_pred HHHHHHHHhccc--------chhHHHHHHHh---hheeee-eeeCCCCCCCCCCHH---HHHHHHHHHhcCcHhhHHHHH
Confidence 999999988852 34555555521 122221 11111123 23333 55666665554221 122 2
Q ss_pred HHHHhc---cCCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHHhh
Q 004950 668 VHFVTK---GFPSAHCPPDLAEQYCQKLQGNDIKALKSFYQSLIEKLRV 713 (722)
Q Consensus 668 ~~l~~~---~lP~~~~~~~~~~~f~~~l~~~~~k~~k~~~~~f~~~~r~ 713 (722)
-.+..+ ..|+ +--+..+-+...+.+.+.+.+..|....|..+|.
T Consensus 211 p~LleKL~s~~~~--~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk~ 257 (262)
T PF14500_consen 211 PLLLEKLDSTSPS--VKLDSLQTLKACIENYGADSLSPHWSTIWNALKF 257 (262)
T ss_pred HHHHHHHcCCCcH--HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 233332 2222 2123333333333456789999999999999885
No 61
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=81.74 E-value=1.4e+02 Score=36.71 Aligned_cols=116 Identities=22% Similarity=0.256 Sum_probs=80.9
Q ss_pred hHHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhCCCCC--CC-hhHHHHHHHHHHHhhHHH---------------
Q 004950 191 EVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPC--HS-NRLVALVYLETVTRYMKF--------------- 252 (722)
Q Consensus 191 ~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~~i~~--~~-hp~V~~~~~e~i~RY~~~--------------- 252 (722)
..+||.|...+++.+-.++++ ++++.++...|+...+.. .+ ..+-.-++.|.|||...+
T Consensus 444 VRDaAcY~~WAf~Rays~~~l---~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV 520 (1133)
T KOG1943|consen 444 VRDAACYVCWAFARAYSPSDL---KPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQGNFPHGISLISTIDYFSV 520 (1133)
T ss_pred hHHHHHHHHHHHHhcCChhhh---hHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCCCCCchhhhhhcchhhh
Confidence 458888999999888766544 346666766666532221 11 122334567899995444
Q ss_pred -------------HhhcCCChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhhccchH-HHHHHHHHh
Q 004950 253 -------------IQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVP-FIENILQSL 310 (722)
Q Consensus 253 -------------~~~~p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L~~-~~~~il~~l 310 (722)
++..|+|..++++-++. .-+.|=+.++|--++|++.++...--+.+.. ++++++...
T Consensus 521 ~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t-~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~ 591 (1133)
T KOG1943|consen 521 TNRSNCYLDLCVSIAEFSGYREPVFNHLLT-KKVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDST 591 (1133)
T ss_pred hhhhhHHHHHhHHHHhhhhHHHHHHHHHHh-cccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhh
Confidence 23478999999999986 3488888999999999999988877777764 677776655
No 62
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=81.30 E-value=52 Score=37.81 Aligned_cols=60 Identities=12% Similarity=0.110 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHHHhhHHHHhhcCCChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhhccc
Q 004950 235 NRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKL 299 (722)
Q Consensus 235 hp~V~~~~~e~i~RY~~~~~~~p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L 299 (722)
.+.+...+-..|.||.++| |++-..++++++| =..+.+..||..|--.+-.|||+...++
T Consensus 35 ~~k~K~Laaq~I~kffk~F---P~l~~~Ai~a~~D--LcEDed~~iR~~aik~lp~~ck~~~~~v 94 (556)
T PF05918_consen 35 SPKEKRLAAQFIPKFFKHF---PDLQEEAINAQLD--LCEDEDVQIRKQAIKGLPQLCKDNPEHV 94 (556)
T ss_dssp -HHHHHHHHHHHHHHHCC----GGGHHHHHHHHHH--HHT-SSHHHHHHHHHHGGGG--T--T-H
T ss_pred CHHHHHHHHHHHHHHHhhC---hhhHHHHHHHHHH--HHhcccHHHHHHHHHhHHHHHHhHHHHH
Confidence 4689999999999998887 7788899999985 3346777898888666666776543333
No 63
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=80.85 E-value=1.1e+02 Score=35.06 Aligned_cols=158 Identities=15% Similarity=0.130 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHhHHHHHHHHHHHhc-CcccccchHHHHHHHHhcC-ChhhHHHHHHHHHHHHHHH
Q 004950 417 IGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTL-GASVFPYLPKALEQLLAES-EPKEMAGFLVLLNQLICKF 494 (722)
Q Consensus 417 ~~~~~~~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~l-g~~v~p~lp~li~~ll~~~-~~~~~~~fL~~~~qli~~f 494 (722)
....+.++.|.+..++- ++..+||+++..++.++.... .+++.+++|.+++++-.-. ..++-.+-| + ..+|
T Consensus 289 Ls~~lp~iiP~lsevl~--DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L---~--~ttF 361 (569)
T KOG1242|consen 289 LSLCLPDLIPVLSEVLW--DTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSL---G--ATTF 361 (569)
T ss_pred HHHHHhHhhHHHHHHHc--cCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhh---c--ceee
Confidence 44567788888888874 999999999999999999997 4778999999999776533 333322211 1 1112
Q ss_pred hhhHH-HHHHhhhHHHHHHHHhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeeecCCCCcCChHHHHH
Q 004950 495 NTLVH-DILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQ 573 (722)
Q Consensus 495 ~~~~~-~~l~~ll~~l~~~v~~~l~~~~~~~~p~~~~d~~r~~~~l~r~y~~fl~~i~~~~~~~vl~s~~~~~~l~~~l~ 573 (722)
-..+. |-|+ ++.|++.|=+ + ..+++..|....+. ..+...++ + .....|+++.++-
T Consensus 362 V~~V~~psLa-lmvpiL~R~l---~--------eRst~~kr~t~~Ii----dNm~~Lve-D------p~~lapfl~~Llp 418 (569)
T KOG1242|consen 362 VAEVDAPSLA-LMVPILKRGL---A--------ERSTSIKRKTAIII----DNMCKLVE-D------PKDLAPFLPSLLP 418 (569)
T ss_pred eeeecchhHH-HHHHHHHHHH---h--------hccchhhhhHHHHH----HHHHHhhc-C------HHHHhhhHHHHhh
Confidence 22222 2222 3344444433 1 11222112222111 11112221 1 1123456666666
Q ss_pred HHHHhhcCCCchHHHHHHHHHHHHHHHHhhCC
Q 004950 574 LLLYTSCNHKDYLVRKACVQIFIRLIKDWCAR 605 (722)
Q Consensus 574 ~l~~~~~~~~d~~~~k~a~~~l~~li~~~~~~ 605 (722)
.+-....+. +|.++-.+...+..+++.-|..
T Consensus 419 ~lk~~~~d~-~PEvR~vaarAL~~l~e~~g~~ 449 (569)
T KOG1242|consen 419 GLKENLDDA-VPEVRAVAARALGALLERLGEV 449 (569)
T ss_pred HHHHHhcCC-ChhHHHHHHHHHHHHHHHHHhh
Confidence 666544454 8888889999999999887654
No 64
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=79.63 E-value=11 Score=36.49 Aligned_cols=76 Identities=16% Similarity=0.173 Sum_probs=55.3
Q ss_pred CCCChhHHHHHHHHHHHhhHH--HHhhcCCChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHH-hhccchHHHHHHH
Q 004950 231 PCHSNRLVALVYLETVTRYMK--FIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKL-LKAKLVPFIENIL 307 (722)
Q Consensus 231 ~~~~hp~V~~~~~e~i~RY~~--~~~~~p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~-~r~~L~~~~~~il 307 (722)
..+++|.||.+++-++.+... ++..+++.+..++. .+.++++.||+.|.+.|..+-+. ....+...+++++
T Consensus 34 L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~------~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i 107 (178)
T PF12717_consen 34 LRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILK------LLVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELI 107 (178)
T ss_pred HCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHH------HHcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 345789999999999988653 34444544444443 44578999999999999999887 4455567788888
Q ss_pred HHhhh
Q 004950 308 QSLQD 312 (722)
Q Consensus 308 ~~l~~ 312 (722)
..+..
T Consensus 108 ~~l~~ 112 (178)
T PF12717_consen 108 SSLNN 112 (178)
T ss_pred HHHhC
Confidence 77755
No 65
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.24 E-value=1.7e+02 Score=36.28 Aligned_cols=247 Identities=18% Similarity=0.203 Sum_probs=137.6
Q ss_pred ChhHHHHHHHHHHHhhHHHHh---hcCCChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhhccchHHHHHHHHHh
Q 004950 234 SNRLVALVYLETVTRYMKFIQ---EHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSL 310 (722)
Q Consensus 234 ~hp~V~~~~~e~i~RY~~~~~---~~p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L~~~~~~il~~l 310 (722)
..+.||.=.+.+++.....-. .-.+.+..+-+.++ .+++....-.+...+..++++.+.|......+++..+.-+
T Consensus 666 ~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~--ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~Ev 743 (1176)
T KOG1248|consen 666 SSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLL--DSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEV 743 (1176)
T ss_pred ccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHH--HHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 345788888888888777611 01245666677777 4666555555555666688888887733333322222211
Q ss_pred hhhhhhhccCCcccccCCCCchhhHHHHHHHHHHccCCCChhhhHHHHHHhHHHHHHHHHHHHHhhhccCCchhhhHHHh
Q 004950 311 QDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFAN 390 (722)
Q Consensus 311 ~~ll~~~~~~~~~~~~~~~~~d~l~L~Eaig~Lis~~~~~~e~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~ 390 (722)
+|..+. .+.. .......+.--||.+-+... +.+++ -...+.+.+..+...+- ++. +..
T Consensus 744 --IL~~Ke-~n~~-----aR~~Af~lL~~i~~i~~~~d-~g~e~---~~~~lnefl~~Isagl~-----gd~---~~~-- 801 (1176)
T KOG1248|consen 744 --ILSLKE-VNVK-----ARRNAFALLVFIGAIQSSLD-DGNEP---ASAILNEFLSIISAGLV-----GDS---TRV-- 801 (1176)
T ss_pred --HHhccc-ccHH-----HHhhHHHHHHHHHHHHhhhc-ccccc---hHHHHHHHHHHHHhhhc-----ccH---HHH--
Confidence 111111 0000 11112233333443223221 22222 12223333333322211 121 111
Q ss_pred HHHHHHHHHHhhhccCCCccCCCcchHHHHHHHHHHHHHHHHhcCCCChhHHhHHHHHHHHHHHhcCcc-cccchHHHHH
Q 004950 391 IQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGAS-VFPYLPKALE 469 (722)
Q Consensus 391 ~~~~i~~l~~lakgf~~~~~~~~~~~~~~~~~~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~lg~~-v~p~lp~li~ 469 (722)
....|.+++++..-|.+.. -.....++.+.+-..+. .+..+|+.+|..+++.+|..+... +.|++|.++.
T Consensus 802 ~as~Ivai~~il~e~~~~l-------d~~~l~~li~~V~~~L~--s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~ 872 (1176)
T KOG1248|consen 802 VASDIVAITHILQEFKNIL-------DDETLEKLISMVCLYLA--SNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLP 872 (1176)
T ss_pred HHHHHHHHHHHHHHHhccc-------cHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHH
Confidence 1223888888887776542 13456667777777776 788999999999999999998755 4799999999
Q ss_pred HHHhcCCh---hhHHHHHHHHHHHHHHHhhh-HHHHHHhhhHHHHHHH
Q 004950 470 QLLAESEP---KEMAGFLVLLNQLICKFNTL-VHDILDEVFPAIAGRI 513 (722)
Q Consensus 470 ~ll~~~~~---~~~~~fL~~~~qli~~f~~~-~~~~l~~ll~~l~~~v 513 (722)
.++..... ..-...-.++-.+|.+|+-+ +.+++.....-++.+|
T Consensus 873 sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe~~~pee~~klL~nI 920 (1176)
T KOG1248|consen 873 SLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELESFLPEEDMKLLTNI 920 (1176)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHHhhCHHHHHHHHHHH
Confidence 88886532 33344557888999999954 4444444333344443
No 66
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.01 E-value=1.5e+02 Score=34.98 Aligned_cols=157 Identities=20% Similarity=0.186 Sum_probs=81.6
Q ss_pred HHHHH--------HHHHHHHHHcChhhHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhcccCchhhhhcccccHHhH
Q 004950 150 YRKDL--------LVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSEL 221 (722)
Q Consensus 150 ~Rk~l--------~~ll~~i~~l~~~l~l~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l 221 (722)
||||+ |.+++=++.+.....++-..+.+...+.+.+.-=-+..=.|+|.+|..+|..-++ -|++
T Consensus 104 ~RkDLQHPNEyiRG~TLRFLckLkE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pD--------apeL 175 (948)
T KOG1058|consen 104 YRKDLQHPNEYIRGSTLRFLCKLKEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPD--------APEL 175 (948)
T ss_pred HhhhccCchHhhcchhhhhhhhcCcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCC--------hHHH
Confidence 66666 3567777777655556666777777776532222345567889999888876544 4556
Q ss_pred HHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhhcCCChHHHHHHhccccCC---CCCCchhHHHHHHHHHHHHHHhhcc
Q 004950 222 VPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGI---HHPNVHVSRRASYLFMRVVKLLKAK 298 (722)
Q Consensus 222 ~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~~p~~L~~vL~~~l~~~Gl---~~~~~~V~~ra~ylf~r~~k~~r~~ 298 (722)
+...+... .+|. .-|-+|+.+. ...| +.+|+|+. ..+ ++=+...+...--++..-|. ..+.
T Consensus 176 i~~fL~~e--~Dps-CkRNAFi~L~-------~~D~---ErAl~Yl~--~~idqi~~~~~~LqlViVE~Irkv~~-~~p~ 239 (948)
T KOG1058|consen 176 IESFLLTE--QDPS-CKRNAFLMLF-------TTDP---ERALNYLL--SNIDQIPSFNDSLQLVIVELIRKVCL-ANPA 239 (948)
T ss_pred HHHHHHhc--cCch-hHHHHHHHHH-------hcCH---HHHHHHHH--hhHhhccCccHHHHHHHHHHHHHHHh-cCHH
Confidence 65443321 1111 2333333221 1122 45666664 222 22223344333333333333 1122
Q ss_pred c-hHHHHHHHHHhhhhhhhhccCCcccccCCCCchhhHHHHHHHHHHccCC
Q 004950 299 L-VPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMED 348 (722)
Q Consensus 299 L-~~~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~L~Eaig~Lis~~~ 348 (722)
. .-|+.-|++.++. ++-.-.|||.|.|+....
T Consensus 240 ~~~~~i~~i~~lL~s------------------tssaV~fEaa~tlv~lS~ 272 (948)
T KOG1058|consen 240 EKARYIRCIYNLLSS------------------TSSAVIFEAAGTLVTLSN 272 (948)
T ss_pred HhhHHHHHHHHHHhc------------------CCchhhhhhcceEEEccC
Confidence 2 2355555555532 133478999999999865
No 67
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=77.53 E-value=5.6 Score=26.36 Aligned_cols=30 Identities=20% Similarity=0.298 Sum_probs=24.8
Q ss_pred HHHHHHHHHhcCCCChhHHhHHHHHHHHHHHh
Q 004950 424 TLDVLLQILVVFPKVEPLRCKVTSFIHRMVDT 455 (722)
Q Consensus 424 ~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~ 455 (722)
++|.+++.++ ..+..||+++..+++.++..
T Consensus 1 llp~l~~~l~--D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLN--DPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT---SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcC--CCCHHHHHHHHHHHHHHHhh
Confidence 4677888887 88999999999999998765
No 68
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=76.81 E-value=31 Score=40.34 Aligned_cols=85 Identities=18% Similarity=0.350 Sum_probs=61.4
Q ss_pred CCCchhHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhhhhhhccCCcccccCCCCchhhHHHHHHHHHHccCCCChhhh
Q 004950 275 HPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQ 354 (722)
Q Consensus 275 ~~~~~V~~ra~ylf~r~~k~~r~~L~~~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~L~Eaig~Lis~~~~~~e~~ 354 (722)
+..+.+|++.-.-+.|.+--+...+.||++.+++.+-. . . |--.+-+-+|.|-.....=..+-
T Consensus 708 ~k~E~iRsavrft~hRmI~~lg~~vlPfipklie~lL~----s------------~-d~kEmvdfl~flsQLihkfk~~~ 770 (980)
T KOG2021|consen 708 NKFENIRSAVRFTFHRMIPILGNKVLPFIPKLIELLLS----S------------T-DLKEMVDFLGFLSQLIHKFKTDC 770 (980)
T ss_pred cccchhHHHHHHHHHHHHHhcchhhhcchHHHHHHHHh----c------------C-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666899999999999999999999999998887732 1 1 11244455555544321112457
Q ss_pred HHHHHHhHHHHHHHHHHHHHhh
Q 004950 355 SDYLSSLLTPLCQQVQTMLLDA 376 (722)
Q Consensus 355 ~~~l~~ll~pl~~~l~~~~~~~ 376 (722)
++.++++++|+..++-..+.+.
T Consensus 771 ~~ilnqmlppll~rIfsvi~r~ 792 (980)
T KOG2021|consen 771 YQILNQMLPPLLNRIFSVIERI 792 (980)
T ss_pred HHHHHHHHHHHHHHHHHHhccc
Confidence 8999999999999999988754
No 69
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.37 E-value=1.5e+02 Score=34.94 Aligned_cols=47 Identities=9% Similarity=0.236 Sum_probs=37.2
Q ss_pred HHHHHHHHhhhccCCccchhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHcc
Q 004950 66 NEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLSPLKEEQRLHAGQILEVILTQIR 124 (722)
Q Consensus 66 ~~~~plvL~~~~~~d~~~~~~~~~F~~~~l~~lk~~~~l~~~~~~~l~~Ll~~li~km~ 124 (722)
.....++|+|+.+.|.++..-++..++.++.. ..+..++..++.|+.
T Consensus 335 qa~kdlIlrcL~DkD~SIRlrALdLl~gmVsk------------kNl~eIVk~LM~~~~ 381 (877)
T KOG1059|consen 335 QAHKDLILRCLDDKDESIRLRALDLLYGMVSK------------KNLMEIVKTLMKHVE 381 (877)
T ss_pred HHhHHHHHHHhccCCchhHHHHHHHHHHHhhh------------hhHHHHHHHHHHHHH
Confidence 46677899999999999999999999998853 236677777777764
No 70
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=75.52 E-value=38 Score=29.91 Aligned_cols=54 Identities=19% Similarity=0.211 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHhcCCCChhHHhHHHHHHHHHHHhcC-cccccchHHHHHHHHh
Q 004950 420 MFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLG-ASVFPYLPKALEQLLA 473 (722)
Q Consensus 420 ~~~~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~lg-~~v~p~lp~li~~ll~ 473 (722)
....+.+-+..+|..--+.+++++.++.+|+-++.+++ +++.|++++++..++.
T Consensus 49 ~i~~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L~~~~l~~ll~~~~~~l~~ 103 (107)
T PF08064_consen 49 HISSARPQIMACLQSALEIPELREEALSCWNCFIKTLDEEDLGPLLDQIFAILLP 103 (107)
T ss_pred HHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 34445555666666555567999999999999999996 5678888888877664
No 71
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=71.47 E-value=2e+02 Score=33.26 Aligned_cols=156 Identities=16% Similarity=0.160 Sum_probs=82.9
Q ss_pred HHHHHHhhhccCCccchhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHcccCcccccCCccCCCCChhHHHHH
Q 004950 68 VLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLSPLKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRM 147 (722)
Q Consensus 68 ~~plvL~~~~~~d~~~~~~~~~F~~~~l~~lk~~~~l~~~~~~~l~~Ll~~li~km~yp~~~~~~~d~~~~~~~ede~~F 147 (722)
++.-++..++++|.++. .+++-.++.+-. +.-.-++|++.+++.++++++-++.+
T Consensus 565 l~d~il~Afqeq~~t~~-~il~~f~tv~vs------l~~r~kp~l~~ivStiL~~L~~k~p~------------------ 619 (975)
T COG5181 565 LYDSILNAFQEQDTTVG-LILPCFSTVLVS------LEFRGKPHLSMIVSTILKLLRSKPPD------------------ 619 (975)
T ss_pred HHHHHHHHHHhcccccc-EEEecccceeee------hhhccCcchHHHHHHHHHHhcCCCcc------------------
Confidence 34446677777766653 444444433211 22234578999999999999987653
Q ss_pred HHHHHHHHHHHHHHHH----cChhhHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhcccCchhhhhcccccHHhHHH
Q 004950 148 VEYRKDLLVLLRSVGR----VAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVP 223 (722)
Q Consensus 148 ~e~Rk~l~~ll~~i~~----l~~~l~l~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~ 223 (722)
.|.+-.|+.-+++. -+....+..+..++-+.+.. ..-+.+-.-|-+++++-...+-.. ...+++.+++
T Consensus 620 --vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge---~ypEvLgsil~Ai~~I~sv~~~~~---mqpPi~~ilP 691 (975)
T COG5181 620 --VRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGE---DYPEVLGSILKAICSIYSVHRFRS---MQPPISGILP 691 (975)
T ss_pred --HHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCc---ccHHHHHHHHHHHHHHhhhhcccc---cCCchhhccc
Confidence 24444444443333 24566666666666666542 112222333333333322222111 1234445555
Q ss_pred HHHhCCCCCCChhHHHHHHHHHHHhhHHHHhhcCCChH
Q 004950 224 MLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIP 261 (722)
Q Consensus 224 ~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~~p~~L~ 261 (722)
.|.. |...-|.+|.-..+.++|.-+. +.|+|++
T Consensus 692 ~ltP--ILrnkh~Kv~~nti~lvg~I~~---~~peyi~ 724 (975)
T COG5181 692 SLTP--ILRNKHQKVVANTIALVGTICM---NSPEYIG 724 (975)
T ss_pred cccH--hhhhhhHHHhhhHHHHHHHHHh---cCcccCC
Confidence 4442 4444788998888887775443 3566654
No 72
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=70.23 E-value=55 Score=28.84 Aligned_cols=73 Identities=19% Similarity=0.260 Sum_probs=49.7
Q ss_pred CChhHHhHHHHHHHHHHHhcCcccccchHHHHHHHHhcCChhhHH-HHHHHHHHHHHHHhhh-HHHHHHhhhHHH
Q 004950 437 KVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEPKEMA-GFLVLLNQLICKFNTL-VHDILDEVFPAI 509 (722)
Q Consensus 437 ~~~~Vre~~~~~~~r~v~~lg~~v~p~lp~li~~ll~~~~~~~~~-~fL~~~~qli~~f~~~-~~~~l~~ll~~l 509 (722)
....-+.++-+.+..|+...|+.+.++.|+++..|-+..+.+++. ..+..-+.+++..+.+ +.+++++.+..+
T Consensus 27 ~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L~~~~l~~ll~~~~~~l 101 (107)
T PF08064_consen 27 KPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIPELREEALSCWNCFIKTLDEEDLGPLLDQIFAIL 101 (107)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 344556667788899999888999999999999988877655432 2334445667666643 555555544433
No 73
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=70.02 E-value=37 Score=32.47 Aligned_cols=82 Identities=23% Similarity=0.239 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHhcCCCChhHHhHHHHHHHHHHHhcCcc-------cccchHHHHHHHHhcCC-hhhHHHHHHHHHHHHHH
Q 004950 422 KQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGAS-------VFPYLPKALEQLLAESE-PKEMAGFLVLLNQLICK 493 (722)
Q Consensus 422 ~~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~lg~~-------v~p~lp~li~~ll~~~~-~~~~~~fL~~~~qli~~ 493 (722)
.+-+..++.+++. +....+.+.++.++.++....+.. ..|.+|.++..++.-.+ .......+..+..++..
T Consensus 66 ~~W~~~Ll~~L~~-~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~~ 144 (165)
T PF08167_consen 66 SQWLRALLSILEK-PDPPSVLEAAIITLTRLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQDSSCPETALDALATLLPH 144 (165)
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 3345566666766 666788999999998888876432 57999999999888665 34566788899999998
Q ss_pred HhhhHHHHHHh
Q 004950 494 FNTLVHDILDE 504 (722)
Q Consensus 494 f~~~~~~~l~~ 504 (722)
|-.-++|+-++
T Consensus 145 ~ptt~rp~~~k 155 (165)
T PF08167_consen 145 HPTTFRPFANK 155 (165)
T ss_pred CCccccchHHH
Confidence 88777776555
No 74
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=69.73 E-value=2.4e+02 Score=33.44 Aligned_cols=136 Identities=16% Similarity=0.220 Sum_probs=83.0
Q ss_pred HHHHHcChhhHHHHHHHHHHHHhcCCCCCChh--hHHHHHHHHHHhccc-CchhhhhcccccHHhHHHHHHhCCCCCCCh
Q 004950 159 RSVGRVAPEVTQVFIRNSLANAVTFSADRNVE--EVEAALTLLYALGES-MSEEAMRTGAGHLSELVPMLLQTKLPCHSN 235 (722)
Q Consensus 159 ~~i~~l~~~l~l~~i~~~l~~~l~~~~~~~W~--~~EaaL~~l~~~gE~-i~~~~~~~~~~~l~~l~~~l~~~~i~~~~h 235 (722)
.-+..+|.+. .|...+...-. .+.+++ ..|++=..+..+|.. +++. .-..++..++..---+...
T Consensus 707 ~ia~KvG~~~---~v~R~v~~lkd--e~e~yrkm~~etv~ri~~~lg~~dider-------leE~lidgil~Afqeqtt~ 774 (1172)
T KOG0213|consen 707 EIAAKVGSDP---IVSRVVLDLKD--EPEQYRKMVAETVSRIVGRLGAADIDER-------LEERLIDGILYAFQEQTTE 774 (1172)
T ss_pred HHHHHhCchH---HHHHHhhhhcc--ccHHHHHHHHHHHHHHHhccccccccHH-------HHHHHHHHHHHHHHhcccc
Confidence 3344466442 34444444322 123344 456666667666654 2211 1112333333210012233
Q ss_pred hHHHHHHHHHHHhhHHHHhhcCCChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhhcc----chHHHHHHHHHh
Q 004950 236 RLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAK----LVPFIENILQSL 310 (722)
Q Consensus 236 p~V~~~~~e~i~RY~~~~~~~p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~----L~~~~~~il~~l 310 (722)
-.|-+..|-+++ .++-.+-..|+|.+..-++ .-+.|+.++||.+|+-++.++.+-.+.. +..|+..+|-.+
T Consensus 775 d~vml~gfg~V~--~~lg~r~kpylpqi~stiL--~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEy 849 (1172)
T KOG0213|consen 775 DSVMLLGFGTVV--NALGGRVKPYLPQICSTIL--WRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEY 849 (1172)
T ss_pred hhhhhhhHHHHH--HHHhhccccchHHHHHHHH--HHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHh
Confidence 357777788877 5677777889999999999 7899999999999999999998877765 667777665444
No 75
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.12 E-value=28 Score=34.53 Aligned_cols=121 Identities=19% Similarity=0.305 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHhcCCCChhHHhHHHHHHHHHHHhcCcccccchHHHHHHHHhcCCh--hh-HHHHHHHHHHHHHHHh--
Q 004950 421 FKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEP--KE-MAGFLVLLNQLICKFN-- 495 (722)
Q Consensus 421 ~~~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~lg~~v~p~lp~li~~ll~~~~~--~~-~~~fL~~~~qli~~f~-- 495 (722)
+...++.+..=|.... -.-|=-|+.-++.++...|..++|.||++|..+-..... .| +-.-|..+.|++..-+
T Consensus 112 y~~yLp~F~dGL~e~~--hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~v 189 (262)
T KOG3961|consen 112 YCPYLPLFFDGLAETD--HPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCV 189 (262)
T ss_pred chHHHHHHhhhhhhcC--CCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccc
Confidence 4445555555554322 233444667778889999999999999999988776543 23 2333566677766544
Q ss_pred -hhHHHHHHhhhHHHHHHHHhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 004950 496 -TLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLH 548 (722)
Q Consensus 496 -~~~~~~l~~ll~~l~~~v~~~l~~~~~~~~p~~~~d~~r~~~~l~r~y~~fl~ 548 (722)
....|+..++|+++ ++|.-.+-. -+...+.|.-|.+.|+..+-+..+-
T Consensus 190 G~aLVPfYRQlLp~~--n~~k~~n~n---~gd~idydk~~~igdlI~dTL~~LE 238 (262)
T KOG3961|consen 190 GAALVPFYRQLLPVL--NTFKNSNVN---RGDGIDYDKNRNIGDLINDTLKHLE 238 (262)
T ss_pred chhhhhHHHHhhhhh--hhhcccccc---cccccCccccccHHHHHHHHHHHHH
Confidence 34778888888766 445444321 1334555655677777776655443
No 76
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.97 E-value=74 Score=37.42 Aligned_cols=152 Identities=18% Similarity=0.223 Sum_probs=93.0
Q ss_pred HHHHHHHHHhhhccCCccchhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHcccCcccccCCccCCCCChhHH
Q 004950 65 LNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLSPLKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEE 144 (722)
Q Consensus 65 l~~~~plvL~~~~~~d~~~~~~~~~F~~~~l~~lk~~~~l~~~~~~~l~~Ll~~li~km~yp~~~~~~~d~~~~~~~ede 144 (722)
+++++==+|+.++.+|.|+..-++.+...+++. +. +.+++..+-+... ...+ +|-
T Consensus 315 l~~l~mDvLrvLss~dldvr~Ktldi~ldLvss-rN-----------vediv~~Lkke~~--kT~~-----------~e~ 369 (948)
T KOG1058|consen 315 LQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSS-RN-----------VEDIVQFLKKEVM--KTHN-----------EES 369 (948)
T ss_pred HHHHHHHHHHHcCcccccHHHHHHHHHHhhhhh-cc-----------HHHHHHHHHHHHH--hccc-----------ccc
Confidence 344444467889999999999999999988854 10 2333333322221 1111 122
Q ss_pred HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhcccCchhhhhcccccHHhHHHH
Q 004950 145 DRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPM 224 (722)
Q Consensus 145 ~~F~e~Rk~l~~ll~~i~~l~~~l~l~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~ 224 (722)
++-..||+-+-..+..|++-.|+..-+.|.-++..+ +.. .-++|...+.-+.|++..-. ..=..++..
T Consensus 370 d~~~~yRqlLiktih~cav~Fp~~aatvV~~ll~fi-sD~------N~~aas~vl~FvrE~iek~p-----~Lr~~ii~~ 437 (948)
T KOG1058|consen 370 DDNGKYRQLLIKTIHACAVKFPEVAATVVSLLLDFI-SDS------NEAAASDVLMFVREAIEKFP-----NLRASIIEK 437 (948)
T ss_pred ccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHh-ccC------CHHHHHHHHHHHHHHHHhCc-----hHHHHHHHH
Confidence 334579999999999999999998777676666643 221 24777777777777764210 011123333
Q ss_pred HHhCCCCCCChhHHHHHHHHHHHhhHHHHh
Q 004950 225 LLQTKLPCHSNRLVALVYLETVTRYMKFIQ 254 (722)
Q Consensus 225 l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~ 254 (722)
++.+ ++..-.+++-..+.|++|.|++=..
T Consensus 438 l~~~-~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 438 LLET-FPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred HHHh-hhhhcccccchhHHHHHHHHHhhhH
Confidence 3332 3333345677788999999988643
No 77
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=67.49 E-value=2.3e+02 Score=32.42 Aligned_cols=119 Identities=16% Similarity=0.214 Sum_probs=64.6
Q ss_pred CChhhHHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhhcCCChHH--HH
Q 004950 187 RNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPV--VL 264 (722)
Q Consensus 187 ~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~~p~~L~~--vL 264 (722)
.+=...+.|+-.|..++..-..-+.=-....+..+...+- .+...+|+-.+|+++..++-=...-++... ++
T Consensus 131 ~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~------~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll 204 (503)
T PF10508_consen 131 PDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMS------QSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLL 204 (503)
T ss_pred CcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHh------ccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHH
Confidence 4455667777777777764211000000111233333222 134578888999988776543322222322 44
Q ss_pred HHhccccCCCCCCchhHHHHHHHHHHHHHHhhccchHHHHH--HHHHhhhhhh
Q 004950 265 AAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIEN--ILQSLQDTIA 315 (722)
Q Consensus 265 ~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L~~~~~~--il~~l~~ll~ 315 (722)
+.++ ..+.+.+.=|+.-+.-++..+++ .++-..|+.+ ++..+-+.+.
T Consensus 205 ~~ll--~eL~~dDiLvqlnalell~~La~--~~~g~~yL~~~gi~~~L~~~l~ 253 (503)
T PF10508_consen 205 DLLL--KELDSDDILVQLNALELLSELAE--TPHGLQYLEQQGIFDKLSNLLQ 253 (503)
T ss_pred HHHH--HHhcCccHHHHHHHHHHHHHHHc--ChhHHHHHHhCCHHHHHHHHHh
Confidence 5555 45556777789999999999988 4444444432 4555555443
No 78
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=65.74 E-value=8.4 Score=31.97 Aligned_cols=48 Identities=15% Similarity=0.167 Sum_probs=35.4
Q ss_pred CChhHHHHHHHHHHHhhHHHHhhcCCChHHHHHHhccccCCCCCCchhHHHHHHHHHHH
Q 004950 233 HSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRV 291 (722)
Q Consensus 233 ~~hp~V~~~~~e~i~RY~~~~~~~p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~ 291 (722)
.+.|.||..++++++++. +++.+|.++. .+.++++.||..|+.++.++
T Consensus 11 ~~~~~vr~~a~~~L~~~~-----~~~~~~~L~~------~l~d~~~~vr~~a~~aL~~i 58 (88)
T PF13646_consen 11 DPDPQVRAEAARALGELG-----DPEAIPALIE------LLKDEDPMVRRAAARALGRI 58 (88)
T ss_dssp SSSHHHHHHHHHHHHCCT-----HHHHHHHHHH------HHTSSSHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHcC-----CHhHHHHHHH------HHcCCCHHHHHHHHHHHHHh
Confidence 466889999999999663 3344444443 33578999999999998876
No 79
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=65.22 E-value=32 Score=30.45 Aligned_cols=92 Identities=18% Similarity=0.200 Sum_probs=60.0
Q ss_pred hHHHHHHhccccCCCCCC--c--hhHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhhhhhhccCCcccccCCCCchhhH
Q 004950 260 IPVVLAAFLDERGIHHPN--V--HVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSH 335 (722)
Q Consensus 260 L~~vL~~~l~~~Gl~~~~--~--~V~~ra~ylf~r~~k~~r~~L~~~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~ 335 (722)
+-.+++.|- .-++|++ . .-+.|+-.++..++|.+++++..+.++|..-++..|... |=+..
T Consensus 9 ~LGil~~f~--~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~-------------eL~~~ 73 (107)
T smart00802 9 FLGILAVFS--NILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIP-------------ELRSL 73 (107)
T ss_pred HHHHHHHHH--HHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch-------------hHHHH
Confidence 335555553 2333333 2 237788888999999999999999999999999877422 22456
Q ss_pred HHHHHHHHHccCCCChhhhHHHHHHhHHHHHHH
Q 004950 336 IFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQ 368 (722)
Q Consensus 336 L~Eaig~Lis~~~~~~e~~~~~l~~ll~pl~~~ 368 (722)
-+++=..++... ++++-...+++++.-+++.
T Consensus 74 al~~W~~~i~~L--~~~~l~~ll~~~~~~i~~~ 104 (107)
T smart00802 74 ALRCWHVLIKTL--KEEELGPLLDQIFAAILPL 104 (107)
T ss_pred HHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHh
Confidence 667777777774 4555455555555444443
No 80
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=65.13 E-value=85 Score=37.44 Aligned_cols=132 Identities=13% Similarity=0.109 Sum_probs=77.7
Q ss_pred HHHHHHcChhhHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhCCCCCCChhH
Q 004950 158 LRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRL 237 (722)
Q Consensus 158 l~~i~~l~~~l~l~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~~i~~~~hp~ 237 (722)
+..++...|++++-.+...... +++ ++=.-.=.||.-|..+.+. ..++.++..+.+ ...++||.
T Consensus 79 l~~yak~~P~~~lLavNti~kD-l~d---~N~~iR~~AlR~ls~l~~~----------el~~~~~~~ik~--~l~d~~ay 142 (757)
T COG5096 79 LERYAKLKPELALLAVNTIQKD-LQD---PNEEIRGFALRTLSLLRVK----------ELLGNIIDPIKK--LLTDPHAY 142 (757)
T ss_pred HHHHhccCHHHHHHHHHHHHhh-ccC---CCHHHHHHHHHHHHhcChH----------HHHHHHHHHHHH--HccCCcHH
Confidence 4566777888887655555543 333 2223334455555444443 457777777776 46789999
Q ss_pred HHHHHHHHHHhhHHHHhhcCCChHHH-HHHhccccCCCCCCchhHHHHHHHHHHHHHHhhccchHHHHHHHHHhhh
Q 004950 238 VALVYLETVTRYMKFIQEHTQYIPVV-LAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQD 312 (722)
Q Consensus 238 V~~~~~e~i~RY~~~~~~~p~~L~~v-L~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L~~~~~~il~~l~~ 312 (722)
||-++...|..+++. .+++.+.. +.-.+. .-+.++++.|.+.|-..+.-++.+ ...+|...+...+..
T Consensus 143 VRk~Aalav~kly~l---d~~l~~~~g~~~~l~-~l~~D~dP~Vi~nAl~sl~~i~~e---~a~~~~~~~~~~i~~ 211 (757)
T COG5096 143 VRKTAALAVAKLYRL---DKDLYHELGLIDILK-ELVADSDPIVIANALASLAEIDPE---LAHGYSLEVILRIPQ 211 (757)
T ss_pred HHHHHHHHHHHHHhc---CHhhhhcccHHHHHH-HHhhCCCchHHHHHHHHHHHhchh---hhhhHHHHHHHHhhh
Confidence 999999999877654 55554444 322221 222467888877775555555554 344555444444433
No 81
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=64.42 E-value=2.8e+02 Score=32.21 Aligned_cols=263 Identities=16% Similarity=0.206 Sum_probs=135.0
Q ss_pred cCCChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhh----ccchHHHHHHHHHhhhhhhhhccCCcccccCCCCc
Q 004950 256 HTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLK----AKLVPFIENILQSLQDTIARFTSMNYASKELSGSE 331 (722)
Q Consensus 256 ~p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r----~~L~~~~~~il~~l~~ll~~~~~~~~~~~~~~~~~ 331 (722)
...|++++..-++ .-+.|+.+.||.||+-+...+.+-++ ..+..++..||-.. ...+ -+|
T Consensus 598 ~kp~l~~ivStiL--~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~------------lge~--ypE 661 (975)
T COG5181 598 GKPHLSMIVSTIL--KLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYEN------------LGED--YPE 661 (975)
T ss_pred cCcchHHHHHHHH--HHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHh------------cCcc--cHH
Confidence 4568999999999 78889999999999888777776655 34444554444222 1000 122
Q ss_pred hhhHHHHHHHHHHccCCCChhhhHHHHHHhH---HHHHHHHHHHHHhhhccCCchhhhHHHhHHHHHHHHHHhhhccCCC
Q 004950 332 DGSHIFEAIGLLIGMEDVPPEKQSDYLSSLL---TPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNER 408 (722)
Q Consensus 332 d~l~L~Eaig~Lis~~~~~~e~~~~~l~~ll---~pl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~lakgf~~~ 408 (722)
-.-.+.-||..+.++.+... -..-+..++ +|++..=++-+ ....|..+|.+++-=+.+
T Consensus 662 vLgsil~Ai~~I~sv~~~~~--mqpPi~~ilP~ltPILrnkh~Kv-----------------~~nti~lvg~I~~~~pey 722 (975)
T COG5181 662 VLGSILKAICSIYSVHRFRS--MQPPISGILPSLTPILRNKHQKV-----------------VANTIALVGTICMNSPEY 722 (975)
T ss_pred HHHHHHHHHHHHhhhhcccc--cCCchhhccccccHhhhhhhHHH-----------------hhhHHHHHHHHHhcCccc
Confidence 22345556666666544321 000111111 22221111111 234555667776543332
Q ss_pred ccCCCcchHHHHHHHHHHHHHHHHhcCCCChhHHhHHHHHHHHHHHhcCcccccchHHHHHHHHhcCChhh-HHHHH-HH
Q 004950 409 LVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEPKE-MAGFL-VL 486 (722)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~lg~~v~p~lp~li~~ll~~~~~~~-~~~fL-~~ 486 (722)
..+ -.|-.++- -+...|.. .+.+||-+|...|+.+.+..|+ .+++..|+++....+ ..-.+ .+
T Consensus 723 i~~---rEWMRIcf----eLvd~Lks--~nKeiRR~A~~tfG~Is~aiGP------qdvL~~LlnnLkvqeRq~Rvctsv 787 (975)
T COG5181 723 IGV---REWMRICF----ELVDSLKS--WNKEIRRNATETFGCISRAIGP------QDVLDILLNNLKVQERQQRVCTSV 787 (975)
T ss_pred CCH---HHHHHHHH----HHHHHHHH--hhHHHHHhhhhhhhhHHhhcCH------HHHHHHHHhcchHHHHHhhhhhhh
Confidence 110 12332222 22333443 3568999998888888887775 577778888775532 22111 11
Q ss_pred HHHHHHHHhhhHHHHHHhhhHHHHHHHHhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeeecCCCCcC
Q 004950 487 LNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRG 566 (722)
Q Consensus 487 ~~qli~~f~~~~~~~l~~ll~~l~~~v~~~l~~~~~~~~p~~~~d~~r~~~~l~r~y~~fl~~i~~~~~~~vl~s~~~~~ 566 (722)
.=.+|.+|- .++ ++++ .+++.-. .|. . --++-+.|+--.|+.-+-+....
T Consensus 788 aI~iVae~c---gpf--sVlP-------~lm~dY~---TPe----~-nVQnGvLkam~fmFeyig~~s~d---------- 837 (975)
T COG5181 788 AISIVAEYC---GPF--SVLP-------TLMSDYE---TPE----A-NVQNGVLKAMCFMFEYIGQASLD---------- 837 (975)
T ss_pred hhhhhHhhc---Cch--hhHH-------HHHhccc---Cch----h-HHHHhHHHHHHHHHHHHHHHHHH----------
Confidence 123444442 121 1222 2223211 232 1 12233566655555444332221
Q ss_pred ChHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 004950 567 YLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLI 599 (722)
Q Consensus 567 ~l~~~l~~l~~~~~~~~d~~~~k~a~~~l~~li 599 (722)
.-..+..++.-|+.-.||.-..+|.++++.++
T Consensus 838 -Yvy~itPlleDAltDrD~vhRqta~nvI~Hl~ 869 (975)
T COG5181 838 -YVYSITPLLEDALTDRDPVHRQTAMNVIRHLV 869 (975)
T ss_pred -HHHHhhHHHHhhhcccchHHHHHHHHHHHHHh
Confidence 11234466666777899999999888888766
No 82
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=62.04 E-value=2.6e+02 Score=31.08 Aligned_cols=221 Identities=16% Similarity=0.186 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHHHhhhccCCccc--hhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHH---------------
Q 004950 60 ASKKLLNEVLPSVFYVMQNCEVDT--TFSIVQFLSGYVATMKSLSPLKEEQRLHAGQILEVILTQ--------------- 122 (722)
Q Consensus 60 ~~~~~l~~~~plvL~~~~~~d~~~--~~~~~~F~~~~l~~lk~~~~l~~~~~~~l~~Ll~~li~k--------------- 122 (722)
.++.||.-+..++++++.+.+.+. -...-.|+..+++.+.+.+ +..++++..++..++.|
T Consensus 102 ~~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D---~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~ 178 (409)
T PF01603_consen 102 PSWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPD---PRERDYLKTILHRIYGKFPNLRSFIRKSINNI 178 (409)
T ss_dssp TTHHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSST---HHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHH
T ss_pred cccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCC---HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 678899999999999988864433 2266789999998886643 34444444444444443
Q ss_pred ---cccCccc-ccCCc---c----CCCCC---hhH-HHH-------------HHHHHHHHHHHHHHHHHcChhhHHHHHH
Q 004950 123 ---IRYDPMY-RNNLD---V----LDKIG---IEE-EDR-------------MVEYRKDLLVLLRSVGRVAPEVTQVFIR 174 (722)
Q Consensus 123 ---m~yp~~~-~~~~d---~----~~~~~---~ed-e~~-------------F~e~Rk~l~~ll~~i~~l~~~l~l~~i~ 174 (722)
..|..+. .+..+ . ..|.. .++ ..- +..|.+++...+.....-+|.+...++.
T Consensus 179 ~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i~ 258 (409)
T PF01603_consen 179 FYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVIK 258 (409)
T ss_dssp HHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHHH
T ss_pred HHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHH
Confidence 3332211 10000 0 01100 111 111 1224556665555566667887777777
Q ss_pred HHHHHHhcCCCCCChhhHHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhh--HHH
Q 004950 175 NSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRY--MKF 252 (722)
Q Consensus 175 ~~l~~~l~~~~~~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY--~~~ 252 (722)
.++..| +..+=+.--.-|..+..+-+.+++++. ......++..+... + +.+|..|.-.++.+...- ..+
T Consensus 259 ~llk~W----P~t~s~Kev~FL~el~~il~~~~~~~f---~~i~~~lf~~la~c-i-~S~h~qVAErAl~~w~n~~~~~l 329 (409)
T PF01603_consen 259 GLLKHW----PKTNSQKEVLFLNELEEILEVLPPEEF---QKIMVPLFKRLAKC-I-SSPHFQVAERALYFWNNEYFLSL 329 (409)
T ss_dssp HHHHHS-----SS-HHHHHHHHHHHHHHHTT--HHHH---HHHHHHHHHHHHHH-H-TSSSHHHHHHHHGGGGSHHHHHH
T ss_pred HHHHhC----CCCCchhHHHHHHHHHHHHHhcCHHHH---HHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHCCHHHHHH
Confidence 777754 333334444556677777777766542 12333344444332 2 237778887777666543 667
Q ss_pred HhhcCC-ChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHH
Q 004950 253 IQEHTQ-YIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVK 293 (722)
Q Consensus 253 ~~~~p~-~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k 293 (722)
+..+.+ .+|.+.+.+.. .+-.|=|..||..|+.+++-|.+
T Consensus 330 i~~~~~~i~p~i~~~L~~-~~~~HWn~~Vr~~a~~vl~~l~~ 370 (409)
T PF01603_consen 330 ISQNSRVILPIIFPALYR-NSKNHWNQTVRNLAQNVLKILME 370 (409)
T ss_dssp HHCTHHHHHHHHHHHHSS-TTSS-SSTTHHHHHHHHHHHHHT
T ss_pred HHhChHHHHHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHHH
Confidence 766654 45666666652 24456677799988776665544
No 83
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.80 E-value=2.9e+02 Score=31.54 Aligned_cols=295 Identities=18% Similarity=0.201 Sum_probs=146.4
Q ss_pred HHHHHHHHHHccCCCChhhhHHHHHHhHHHHHHHHHHHHHhhhccCCchhhhHHHhHHHHHHHHHHhhhccCCCccCCCc
Q 004950 335 HIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSR 414 (722)
Q Consensus 335 ~L~Eaig~Lis~~~~~~e~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~lakgf~~~~~~~~~ 414 (722)
--|||.=+|--...-+.++-....+.=.-|++-++ ++. +..+. ..+.+-|+|.++. .+
T Consensus 126 lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~L---l~s-----~~~~v-----~eQavWALgNIag-ds-------- 183 (514)
T KOG0166|consen 126 LQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQL---LSS-----PSADV-----REQAVWALGNIAG-DS-------- 183 (514)
T ss_pred HHHHHHHHHHHHhcCchhhccccccCCchHHHHHH---hcC-----CcHHH-----HHHHHHHHhcccc-CC--------
Confidence 35566555544332244444444455555554443 221 11111 3577888888752 12
Q ss_pred chHHHHHHH--HHHHHHHHHhcCCCChhHHhHHHHHHHHHHHhcC-----cccccchHHHHHHHHhcCChhhHHHHHHHH
Q 004950 415 PAIGLMFKQ--TLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLG-----ASVFPYLPKALEQLLAESEPKEMAGFLVLL 487 (722)
Q Consensus 415 ~~~~~~~~~--~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~lg-----~~v~p~lp~li~~ll~~~~~~~~~~fL~~~ 487 (722)
|.|-.+..+ +++-++..+........+|.++ -++..+++.-. ..+.|.+|.+.. ++.+.+..-+.+.+|.+
T Consensus 184 ~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~t-W~LsNlcrgk~P~P~~~~v~~iLp~L~~-ll~~~D~~Vl~Da~WAl 261 (514)
T KOG0166|consen 184 PDCRDYVLSCGALDPLLRLLNKSDKLSMLRNAT-WTLSNLCRGKNPSPPFDVVAPILPALLR-LLHSTDEEVLTDACWAL 261 (514)
T ss_pred hHHHHHHHhhcchHHHHHHhccccchHHHHHHH-HHHHHHHcCCCCCCcHHHHHHHHHHHHH-HHhcCCHHHHHHHHHHH
Confidence 234333333 6666666666544444555543 44455554432 234566676666 66667777789999999
Q ss_pred HHHHHHHhhhHHHHHHhhhHHHHHHHHhhccCCCC---------CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCee
Q 004950 488 NQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAF---------PSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSV 558 (722)
Q Consensus 488 ~qli~~f~~~~~~~l~~ll~~l~~~v~~~l~~~~~---------~~~p~~~~d~~r~~~~l~r~y~~fl~~i~~~~~~~v 558 (722)
+-+...--+.+.-.++. .++.++..+|..... ..+..+++|.. .+.++..+
T Consensus 262 syLsdg~ne~iq~vi~~---gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~Q-------------Tq~vi~~~---- 321 (514)
T KOG0166|consen 262 SYLTDGSNEKIQMVIDA---GVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQ-------------TQVVINSG---- 321 (514)
T ss_pred HHHhcCChHHHHHHHHc---cchHHHHHHHcCCCcccccHHHhhccceeeccHHH-------------HHHHHhcC----
Confidence 98876444333333332 245566777765320 01123455531 22333322
Q ss_pred ecCCCCcCChHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhCCCCCCCCchhHHHHHHH-hhhhhhhhhcccCCCC
Q 004950 559 FLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDWCARPFVEEKVPGFQSFMIE-AFAMNCCLYSVLDKSF 637 (722)
Q Consensus 559 l~s~~~~~~l~~~l~~l~~~~~~~~d~~~~k~a~~~l~~li~~~~~~~~~~~~~~gf~~fl~~-~~~~~~~~~~~~~~~F 637 (722)
.|+ .|..++ ..++....+|-|+=.++++.. | -+.-.|.+++ .+.|. ...+.....|
T Consensus 322 --------~L~-~l~~ll---~~s~~~~ikkEAcW~iSNItA---G-------~~~qiqaVida~l~p~-Li~~l~~~ef 378 (514)
T KOG0166|consen 322 --------ALP-VLSNLL---SSSPKESIKKEACWTISNITA---G-------NQEQIQAVIDANLIPV-LINLLQTAEF 378 (514)
T ss_pred --------hHH-HHHHHh---ccCcchhHHHHHHHHHHHhhc---C-------CHHHHHHHHHcccHHH-HHHHHhccch
Confidence 122 232333 345666688888888888761 2 1333444444 44554 3444445555
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHHhh
Q 004950 638 EFGDANTLVLFGEIVLAQKVMYEKFGNDFLVHFVTKGFPSAHCPPDLAEQYCQKLQGNDIKALKSFYQSLIEKLRV 713 (722)
Q Consensus 638 ~~~Da~~~~~l~eia~~l~~l~~~~g~e~~~~l~~~~lP~~~~~~~~~~~f~~~l~~~~~k~~k~~~~~f~~~~r~ 713 (722)
+++ .|.+=...-+...--.+.+.||..... ...||.-|.-.|.|-.+..+..+-.-++.
T Consensus 379 ~~r--------KEAawaIsN~ts~g~~~qi~yLv~~gi---------I~plcdlL~~~D~~ii~v~Ld~l~nil~~ 437 (514)
T KOG0166|consen 379 DIR--------KEAAWAISNLTSSGTPEQIKYLVEQGI---------IKPLCDLLTCPDVKIILVALDGLENILKV 437 (514)
T ss_pred HHH--------HHHHHHHHhhcccCCHHHHHHHHHcCC---------chhhhhcccCCChHHHHHHHHHHHHHHHH
Confidence 431 233333333222222345556654321 23366666445666666655555444444
No 84
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=61.45 E-value=1.5e+02 Score=28.23 Aligned_cols=131 Identities=18% Similarity=0.196 Sum_probs=76.2
Q ss_pred HHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhcccCchhhhh-cccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhh
Q 004950 171 VFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMR-TGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRY 249 (722)
Q Consensus 171 ~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~~gE~i~~~~~~-~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY 249 (722)
......+.+.+.+ .++...-+|+..+....+.++.+-.. ....-+..++.. ++. ..-+.+.-.++.++.+.
T Consensus 24 ~~l~~ri~~LL~s---~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~-L~~----~~~~~~~~~ai~~L~~l 95 (165)
T PF08167_consen 24 HKLVTRINSLLQS---KSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSI-LEK----PDPPSVLEAAIITLTRL 95 (165)
T ss_pred HHHHHHHHHHhCC---CChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HcC----CCCHHHHHHHHHHHHHH
Confidence 3344445555543 45666678999999999988665442 222334444433 332 22356888999999999
Q ss_pred HHHHhhcCCC--------hHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhh
Q 004950 250 MKFIQEHTQY--------IPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDT 313 (722)
Q Consensus 250 ~~~~~~~p~~--------L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L~~~~~~il~~l~~l 313 (722)
..+....|++ +|..++.++ ++.++ ..+..-+.-++..+.+.--.-..||..++-..+-++
T Consensus 96 ~~~~~~~p~l~Rei~tp~l~~~i~~ll---~l~~~-~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~l 163 (165)
T PF08167_consen 96 FDLIRGKPTLTREIATPNLPKFIQSLL---QLLQD-SSCPETALDALATLLPHHPTTFRPFANKIESALLSL 163 (165)
T ss_pred HHHhcCCCchHHHHhhccHHHHHHHHH---HHHhc-cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHH
Confidence 9988876653 555555554 22221 234444555566666655556666666655555443
No 85
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=60.06 E-value=35 Score=33.22 Aligned_cols=87 Identities=17% Similarity=0.285 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHhcCCCChhHHhHHHHHHHHHHHh-cCcccccchHHHHHHHHhcCChh---hHHHHHHHHHHH---HHH
Q 004950 421 FKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDT-LGASVFPYLPKALEQLLAESEPK---EMAGFLVLLNQL---ICK 493 (722)
Q Consensus 421 ~~~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~-lg~~v~p~lp~li~~ll~~~~~~---~~~~fL~~~~ql---i~~ 493 (722)
+...++++..=+. ....+-|=-|+.-++.|+.. -|+.++|.+|+++..+-...++. -....|..+.++ ...
T Consensus 36 y~~~Lpif~dGL~--Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~ 113 (183)
T PF10274_consen 36 YHHYLPIFFDGLR--ETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDM 113 (183)
T ss_pred hhhHHHHHHhhhh--ccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhh
Confidence 4455666655554 44455666677788888888 67889999999999988766442 244455666677 444
Q ss_pred HhhhHHHHHHhhhHHH
Q 004950 494 FNTLVHDILDEVFPAI 509 (722)
Q Consensus 494 f~~~~~~~l~~ll~~l 509 (722)
-|....|.+.++++++
T Consensus 114 vG~aLvPyyrqLLp~l 129 (183)
T PF10274_consen 114 VGEALVPYYRQLLPVL 129 (183)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 4555677777766654
No 86
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=58.18 E-value=2.6e+02 Score=30.13 Aligned_cols=99 Identities=17% Similarity=0.168 Sum_probs=62.3
Q ss_pred CCCCChhhHHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhhcCC-----
Q 004950 184 SADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQ----- 258 (722)
Q Consensus 184 ~~~~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~~p~----- 258 (722)
.++.+-++.|.|+.-+..+.|.++.-..=...+.+.-++. ..+.+++.||-.+.++||.- ++.||.
T Consensus 92 ~~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~------~l~~~~~~lR~~Aa~Vigt~---~qNNP~~Qe~v 162 (342)
T KOG2160|consen 92 SSSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLG------YLENSDAELRELAARVIGTA---VQNNPKSQEQV 162 (342)
T ss_pred cccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHH------HhcCCcHHHHHHHHHHHHHH---HhcCHHHHHHH
Confidence 3457899999999999999999985321001122222222 24456778998888888743 344443
Q ss_pred ----ChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhh
Q 004950 259 ----YIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLK 296 (722)
Q Consensus 259 ----~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r 296 (722)
.++..+..+- .+.+..+|+.|-|+++-+++.-.
T Consensus 163 ~E~~~L~~Ll~~ls-----~~~~~~~r~kaL~AissLIRn~~ 199 (342)
T KOG2160|consen 163 IELGALSKLLKILS-----SDDPNTVRTKALFAISSLIRNNK 199 (342)
T ss_pred HHcccHHHHHHHHc-----cCCCchHHHHHHHHHHHHHhcCc
Confidence 4555554443 34566788889777776666433
No 87
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=57.02 E-value=3e+02 Score=30.17 Aligned_cols=281 Identities=15% Similarity=0.153 Sum_probs=126.4
Q ss_pred ChHHHHHHHHHHHHHHHHHcccCcccccCCccCCCCChhHHHHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHH---H
Q 004950 104 LKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLAN---A 180 (722)
Q Consensus 104 l~~~~~~~l~~Ll~~li~km~yp~~~~~~~d~~~~~~~ede~~F~e~Rk~l~~ll~~i~~l~~~l~l~~i~~~l~~---~ 180 (722)
+.+.+.+++........+=+.||..... .+|+|+...-...++.+.+.+.-.+.-..+..-.++...+.. .
T Consensus 72 LPe~fed~l~~wm~~f~~~L~~~~p~l~------~~d~~e~~~l~kvK~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~l 145 (370)
T PF08506_consen 72 LPEFFEDNLSEWMEIFHKYLTYPNPALE------EDDDDEPGLLEKVKAWICENLNLYAEKYEEEFEPFLPTFVQAVWNL 145 (370)
T ss_dssp --HHHHHTHHHHHHHHHHHHH--SGGG-------TT-SSS--HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHcCCCcccC------CCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666667654321 111223333444555555555544444444433333333332 2
Q ss_pred hcCC-CCCChhh-HHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhhcC-
Q 004950 181 VTFS-ADRNVEE-VEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHT- 257 (722)
Q Consensus 181 l~~~-~~~~W~~-~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~~p- 257 (722)
+.+. ....|.. +-.||.-|.++.+...-...=..++.+.+++..++- |+ +++.- .=.+-|+.+|
T Consensus 146 L~~~~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Iie~VI~---Pn-----l~~~e-----~D~ElfEddP~ 212 (370)
T PF08506_consen 146 LTKISQQPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQIIEKVIF---PN-----LCLRE-----EDEELFEDDPE 212 (370)
T ss_dssp HTC--SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHHHHTHH---HH-----HS--H-----HHHHHHHHSHH
T ss_pred HHHhhhcccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHHHHhcc---Cc-----cCCCH-----HHHHHHccCHH
Confidence 3332 2233443 356777777776654321110123455555554331 21 11110 1134566676
Q ss_pred CChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhhccch----HHHHHHHHHhhhhhhhhccCCcccccCCCCchh
Q 004950 258 QYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLV----PFIENILQSLQDTIARFTSMNYASKELSGSEDG 333 (722)
Q Consensus 258 ~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L~----~~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~ 333 (722)
||+.. -++ | .+ ....|.+|+-++..+|+.=+..+. .|+..+++.++. ..+.+.. ..|.-
T Consensus 213 EYIrr----d~e--~-sd-~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~----~~~~~w~-----~KD~A 275 (370)
T PF08506_consen 213 EYIRR----DLE--G-SD-SDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYAS----NPSNNWR-----SKDGA 275 (370)
T ss_dssp HHHHH----HSC--S-S----SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TTT-HH-----HHHHH
T ss_pred HHHHh----hcc--c-cc-cCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh----CCcccHH-----HHHHH
Confidence 66654 232 4 23 244677888899999987555554 355555555543 1111111 12334
Q ss_pred hHHHHHHHHHHccCC--CCh----hhhHHHHHHhHHHHHHHHHHHHHhhhccCCchhhhHHHhHHHHHHHHHHhhhccCC
Q 004950 334 SHIFEAIGLLIGMED--VPP----EKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNE 407 (722)
Q Consensus 334 l~L~Eaig~Lis~~~--~~~----e~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~lakgf~~ 407 (722)
++|+-+++.-.+... +.. -+..+.+...+-|-++ .. . +..++. ..+++.++.++...++
T Consensus 276 l~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~--------~~---~--~~~piL-ka~aik~~~~Fr~~l~- 340 (370)
T PF08506_consen 276 LYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ--------PD---V--NSHPIL-KADAIKFLYTFRNQLP- 340 (370)
T ss_dssp HHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH---------S---S---S-HHH-HHHHHHHHHHHGGGS--
T ss_pred HHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc--------cc---C--CCCcch-HHHHHHHHHHHHhhCC-
Confidence 566555554443211 111 0123333333333221 00 0 012222 3567777777655443
Q ss_pred CccCCCcchHHHHHHHHHHHHHHHHhcCCCChhHHhHHHH
Q 004950 408 RLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTS 447 (722)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~vi~~~l~~~~~~~~Vre~~~~ 447 (722)
.+.+.++++.+...|. ..+..|+-.|..
T Consensus 341 ----------~~~l~~~~~~l~~~L~--~~~~vv~tyAA~ 368 (370)
T PF08506_consen 341 ----------KEQLLQIFPLLVNHLQ--SSSYVVHTYAAI 368 (370)
T ss_dssp ----------HHHHHHHHHHHHHHTT--SS-HHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHhC--CCCcchhhhhhh
Confidence 3567788899988887 566677765543
No 88
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.22 E-value=73 Score=37.61 Aligned_cols=125 Identities=12% Similarity=0.210 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHHHcC---hhhHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhcccCchhhhhcccccHHhHH
Q 004950 146 RMVEYRKDLLVLLRSVGRVA---PEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELV 222 (722)
Q Consensus 146 ~F~e~Rk~l~~ll~~i~~l~---~~l~l~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~ 222 (722)
.+-||.+.+-+.+-.+..-. .+..+..+...+.. -+..+.+.+.++-+|..+|... .+...+.-+.
T Consensus 404 Gg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIED---------ce~~~i~~rILhlLG~EgP~a~--~Pskyir~iy 472 (865)
T KOG1078|consen 404 GGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIED---------CEFTQIAVRILHLLGKEGPKAP--NPSKYIRFIY 472 (865)
T ss_pred cCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHh---------ccchHHHHHHHHHHhccCCCCC--CcchhhHHHh
Confidence 34445555555444333322 23444555555543 2235778888888888877431 1223444443
Q ss_pred HHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhhcCCChHHHHHHhccccCCCCCCchhHHHHHHHHHHHH
Q 004950 223 PMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVV 292 (722)
Q Consensus 223 ~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~~p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~ 292 (722)
..++ . .|..||-.+.-.+..+. ...+...|+++..+- |++.+++..||-||.+++..+-
T Consensus 473 NRvi----L--En~ivRaaAv~alaKfg---~~~~~l~~sI~vllk--Rc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 473 NRVI----L--ENAIVRAAAVSALAKFG---AQDVVLLPSILVLLK--RCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred hhhh----h--hhhhhHHHHHHHHHHHh---cCCCCccccHHHHHH--HHhcCchHHHHHHHHHHHHHhh
Confidence 3322 2 34568877766665555 777888899998888 9999999999999988877665
No 89
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=55.44 E-value=64 Score=31.47 Aligned_cols=54 Identities=13% Similarity=0.201 Sum_probs=41.1
Q ss_pred hHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHH-hhccchHHHHHHHHHhhhhhh
Q 004950 260 IPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKL-LKAKLVPFIENILQSLQDTIA 315 (722)
Q Consensus 260 L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~-~r~~L~~~~~~il~~l~~ll~ 315 (722)
..+.|+.|+ -|++....--+--|-..+..+++. ....+.|.+++++.-+...|.
T Consensus 36 y~~~Lpif~--dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~ 90 (183)
T PF10274_consen 36 YHHYLPIFF--DGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALN 90 (183)
T ss_pred hhhHHHHHH--hhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHh
Confidence 357788999 588764333444555568888888 788899999999999998885
No 90
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=53.12 E-value=4.9e+02 Score=31.51 Aligned_cols=132 Identities=18% Similarity=0.168 Sum_probs=80.7
Q ss_pred HHHHHHHhcCCCCCChhhHHHHHHHHHHhcccCchhh-hhcccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHH
Q 004950 174 RNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEA-MRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKF 252 (722)
Q Consensus 174 ~~~l~~~l~~~~~~~W~~~EaaL~~l~~~gE~i~~~~-~~~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~ 252 (722)
-+.+..++.. ..++.-.=.|..+|+.|-|.+|..- .--....+|-+...|+. |...+----.++++|.|.|=+.=
T Consensus 213 vp~Lv~LL~~--E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~--IeyiDvAEQ~LqALE~iSR~H~~ 288 (1051)
T KOG0168|consen 213 VPVLVALLSH--EHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLT--IEYIDVAEQSLQALEKISRRHPK 288 (1051)
T ss_pred HHHHHHHHhc--cccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhh--hhhhHHHHHHHHHHHHHHhhccH
Confidence 3445555543 2346667889999999999998641 11122467777777776 33333223456777777776655
Q ss_pred HhhcCCChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhhhh
Q 004950 253 IQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIA 315 (722)
Q Consensus 253 ~~~~p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L~~~~~~il~~l~~ll~ 315 (722)
-..+..-|..+|.|| |=..++ ++..|-..-...||.+++.=..|+-+-+-.+.++|+
T Consensus 289 AiL~AG~l~a~Lsyl-DFFSi~-----aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs 345 (1051)
T KOG0168|consen 289 AILQAGALSAVLSYL-DFFSIH-----AQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLS 345 (1051)
T ss_pred HHHhcccHHHHHHHH-HHHHHH-----HHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHh
Confidence 555666788888877 102221 333443335788888887766666666666666665
No 91
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=50.93 E-value=3.4e+02 Score=29.01 Aligned_cols=125 Identities=10% Similarity=0.250 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHH-hcCCCChhHHhHHHHHHHHHHHhcCcccccchHHH----HHHHHhcCC--hhhH-HHHHHHHH
Q 004950 417 IGLMFKQTLDVLLQIL-VVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKA----LEQLLAESE--PKEM-AGFLVLLN 488 (722)
Q Consensus 417 ~~~~~~~~~~vi~~~l-~~~~~~~~Vre~~~~~~~r~v~~lg~~v~p~lp~l----i~~ll~~~~--~~~~-~~fL~~~~ 488 (722)
+..++..+.+..+... +.+...++.|..-..+++.++..+-+.++.+=|.. ++.++-.+. .+++ ..-|..+.
T Consensus 111 v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~ 190 (319)
T PF08767_consen 111 VPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILL 190 (319)
T ss_dssp HHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 4455555555444444 34777899999999999999998765553221444 443332222 1222 22234444
Q ss_pred HHHHHHhh---h-HHHHHHhhhHHHHHHHHhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 004950 489 QLICKFNT---L-VHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLH 548 (722)
Q Consensus 489 qli~~f~~---~-~~~~l~~ll~~l~~~v~~~l~~~~~~~~p~~~~d~~r~~~~l~r~y~~fl~ 548 (722)
.++.+..+ + ..++..+.+..++..+|.++-.. ...-.++.+..+.+..|.+..
T Consensus 191 ~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~-------~Hk~gf~~q~~iL~~Lf~~ve 247 (319)
T PF08767_consen 191 ELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDS-------DHKSGFKLQSQILSNLFRLVE 247 (319)
T ss_dssp HHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHST-------T-GGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCc-------ccHHHHHHHHHHHHHHHHHHH
Confidence 45544443 2 56788888888999999998642 233455555555555554433
No 92
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=50.55 E-value=2.2e+02 Score=33.83 Aligned_cols=125 Identities=10% Similarity=0.033 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHhcCCCeeecCCCCcCChHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhCCCCCCCCchhHHHH
Q 004950 539 LQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDWCARPFVEEKVPGFQSF 618 (722)
Q Consensus 539 l~r~y~~fl~~i~~~~~~~vl~s~~~~~~l~~~l~~l~~~~~~~~d~~~~k~a~~~l~~li~~~~~~~~~~~~~~gf~~f 618 (722)
-+-.-+.++..++...+..+-. -...+.|. .|+.|...-.++.+.-+|+.+|..++-.... .+..+---
T Consensus 84 ~Rl~~L~Ll~~~v~~qp~~l~~-i~~t~Lf~----~LLk~L~~D~~~~~~~~al~~LimlLP~ip~------~l~~~L~~ 152 (668)
T PF04388_consen 84 YRLQALTLLGHFVRSQPPWLYK-ILQTPLFK----SLLKCLQFDTSITVVSSALLVLIMLLPHIPS------SLGPHLPD 152 (668)
T ss_pred hHHHHHHHHHHHHhcCCchHHH-HhcChhHH----HHHHHHhhcccHHHHHHHHHHHHHHhccccc------hhhHHHHH
Confidence 4566678888888887764411 12223344 4444444557788888999999999954432 22333334
Q ss_pred HHHhhhhhhhhhcccCCCCCCCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCC
Q 004950 619 MIEAFAMNCCLYSVLDKSFEFGDANTLVLFGEIVLAQKVMYEKFGNDFLVHFVTKGFP 676 (722)
Q Consensus 619 l~~~~~~~~~~~~~~~~~F~~~Da~~~~~l~eia~~l~~l~~~~g~e~~~~l~~~~lP 676 (722)
+.+-++.++||..-....+ .|......-.-+-.++..||--++-+|+.|++..|..
T Consensus 153 Lf~If~Rl~~W~~~~~~~~--~~~~~~~l~~~~~~lFt~LYGlyP~NF~~flr~~y~~ 208 (668)
T PF04388_consen 153 LFNIFGRLLSWERKNPGSV--PEVYLIHLQASVYALFTRLYGLYPCNFLSFLRQHYSS 208 (668)
T ss_pred HHHHHHHHHHcccCCCCCc--cccccccchhhHHHHHHHHHhcccchHHHHHHHHHhc
Confidence 4444566666765222222 2332211111233467788888899999999865543
No 93
>PRK09687 putative lyase; Provisional
Probab=49.46 E-value=3.3e+02 Score=28.47 Aligned_cols=86 Identities=10% Similarity=0.028 Sum_probs=55.8
Q ss_pred CChhhHHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhhcCCChHHHHHH
Q 004950 187 RNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAA 266 (722)
Q Consensus 187 ~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~~p~~L~~vL~~ 266 (722)
.+.+..+.+++.|..+|+. ..++.+.. +++ .+.|.+|....+.++... ..+.-.+.+++.
T Consensus 35 ~d~~vR~~A~~aL~~~~~~----------~~~~~l~~-ll~-----~~d~~vR~~A~~aLg~lg----~~~~~~~~a~~~ 94 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQ----------DVFRLAIE-LCS-----SKNPIERDIGADILSQLG----MAKRCQDNVFNI 94 (280)
T ss_pred CCHHHHHHHHHHHHhcCcc----------hHHHHHHH-HHh-----CCCHHHHHHHHHHHHhcC----CCccchHHHHHH
Confidence 6788888999999888753 23443434 333 245789999999999743 222112334444
Q ss_pred hccccCCCCCCchhHHHHHHHHHHHHH
Q 004950 267 FLDERGIHHPNVHVSRRASYLFMRVVK 293 (722)
Q Consensus 267 ~l~~~Gl~~~~~~V~~ra~ylf~r~~k 293 (722)
+.. .-..++++.||..++.++.++|.
T Consensus 95 L~~-l~~~D~d~~VR~~A~~aLG~~~~ 120 (280)
T PRK09687 95 LNN-LALEDKSACVRASAINATGHRCK 120 (280)
T ss_pred HHH-HHhcCCCHHHHHHHHHHHhcccc
Confidence 431 11357889999999999999875
No 94
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=49.28 E-value=8.5e+02 Score=33.13 Aligned_cols=95 Identities=18% Similarity=0.157 Sum_probs=62.7
Q ss_pred ChhhHHHHHHHHHHhcccCchhhh-hcccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHH------hhcCCCh
Q 004950 188 NVEEVEAALTLLYALGESMSEEAM-RTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFI------QEHTQYI 260 (722)
Q Consensus 188 ~W~~~EaaL~~l~~~gE~i~~~~~-~~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~------~~~p~~L 260 (722)
+=+..+.|+..++.++.+-+.+.. =-..+.+|.++.+|- .+++.++-.+.++++..+..= -....-+
T Consensus 459 s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~------s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAI 532 (2102)
T PLN03200 459 SEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLE------TGSQKAKEDSATVLWNLCCHSEDIRACVESAGAV 532 (2102)
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc------CCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCH
Confidence 345678899999999876543210 012466777777653 246789999999999876521 1134567
Q ss_pred HHHHHHhccccCCCCCCchhHHHHHHHHHHHHHH
Q 004950 261 PVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKL 294 (722)
Q Consensus 261 ~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~ 294 (722)
|+.++.+- +.+.+++..|+.++.++++.
T Consensus 533 ppLV~LL~------sgd~~~q~~Aa~AL~nLi~~ 560 (2102)
T PLN03200 533 PALLWLLK------NGGPKGQEIAAKTLTKLVRT 560 (2102)
T ss_pred HHHHHHHh------CCCHHHHHHHHHHHHHHHhc
Confidence 77776654 33567888888888888764
No 95
>PRK09687 putative lyase; Provisional
Probab=48.41 E-value=1.4e+02 Score=31.37 Aligned_cols=84 Identities=11% Similarity=0.043 Sum_probs=53.9
Q ss_pred CChhhHHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhhcCCChHHHHHH
Q 004950 187 RNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAA 266 (722)
Q Consensus 187 ~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~~p~~L~~vL~~ 266 (722)
.+|.....|+..|+.++..-. ...+..+..+.. ...++++.||......++++. +++.++.++..
T Consensus 103 ~d~~VR~~A~~aLG~~~~~~~--------~~~~~a~~~l~~--~~~D~~~~VR~~a~~aLg~~~-----~~~ai~~L~~~ 167 (280)
T PRK09687 103 KSACVRASAINATGHRCKKNP--------LYSPKIVEQSQI--TAFDKSTNVRFAVAFALSVIN-----DEAAIPLLINL 167 (280)
T ss_pred CCHHHHHHHHHHHhccccccc--------ccchHHHHHHHH--HhhCCCHHHHHHHHHHHhccC-----CHHHHHHHHHH
Confidence 567778889888877754321 112233333322 123356789999999998652 45555555444
Q ss_pred hccccCCCCCCchhHHHHHHHHHHH
Q 004950 267 FLDERGIHHPNVHVSRRASYLFMRV 291 (722)
Q Consensus 267 ~l~~~Gl~~~~~~V~~ra~ylf~r~ 291 (722)
+ .+++..||..|++++.++
T Consensus 168 L------~d~~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 168 L------KDPNGDVRNWAAFALNSN 186 (280)
T ss_pred h------cCCCHHHHHHHHHHHhcC
Confidence 4 467788999999999887
No 96
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=48.27 E-value=23 Score=34.03 Aligned_cols=77 Identities=9% Similarity=0.186 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHhhHHHHhhcCCChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhhhhh
Q 004950 237 LVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIAR 316 (722)
Q Consensus 237 ~V~~~~~e~i~RY~~~~~~~p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L~~~~~~il~~l~~ll~~ 316 (722)
-+|-++||++--.-+-...+- -+...++.+. .|+.+ +..++.-|+..+.|++..+-..+.+.++.+.+.++..+..
T Consensus 42 elRK~ayE~lytlLd~~~~~~-~~~~~~~~v~--~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~ 117 (169)
T PF08623_consen 42 ELRKAAYECLYTLLDTCLSRI-DISEFLDRVE--AGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSK 117 (169)
T ss_dssp HHHHHHHHHHHHHHHSTCSSS--HHHHHHHHH--HTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHhC-CHHHHHHHHH--hhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhc
Confidence 478888888765544222222 2667788888 89988 8889999999999999999888888889888888888864
Q ss_pred h
Q 004950 317 F 317 (722)
Q Consensus 317 ~ 317 (722)
+
T Consensus 118 k 118 (169)
T PF08623_consen 118 K 118 (169)
T ss_dssp -
T ss_pred c
Confidence 4
No 97
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=48.22 E-value=3.4e+02 Score=28.17 Aligned_cols=145 Identities=11% Similarity=0.121 Sum_probs=80.3
Q ss_pred CChhhHHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhhcCCChHHHHHH
Q 004950 187 RNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAA 266 (722)
Q Consensus 187 ~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~~p~~L~~vL~~ 266 (722)
.++...+-|+.+|..+-+.++++..+ .....-++..... .+ .+|+.+..+ +.-+.+..+.-...++....+++.
T Consensus 11 ed~~~R~ka~~~Ls~vL~~lp~~~L~--~~ev~~L~~F~~~-rl--~D~~~~~~~-l~gl~~L~~~~~~~~~~~~~i~~~ 84 (262)
T PF14500_consen 11 EDPIIRAKALELLSEVLERLPPDFLS--RQEVQVLLDFFCS-RL--DDHACVQPA-LKGLLALVKMKNFSPESAVKILRS 84 (262)
T ss_pred CCHHHHHHHHHHHHHHHHhCCHhhcc--HHHHHHHHHHHHH-Hh--ccHhhHHHH-HHHHHHHHhCcCCChhhHHHHHHH
Confidence 68999999999999999999865332 1223334444443 23 245555443 444333333322345567888888
Q ss_pred hccccCCCCCCchhHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhhhhhhccCCcccccCCCCchhhHHHHHHHHHHcc
Q 004950 267 FLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGM 346 (722)
Q Consensus 267 ~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L~~~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~L~Eaig~Lis~ 346 (722)
+++...++.-....|..+-.++..+....+..+...-+.++..+-.+.. +-| .|..-+.+|+.+-.++..
T Consensus 85 l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~-------gEk---DPRnLl~~F~l~~~i~~~ 154 (262)
T PF14500_consen 85 LFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLID-------GEK---DPRNLLLSFKLLKVILQE 154 (262)
T ss_pred HHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhc-------cCC---CHHHHHHHHHHHHHHHHh
Confidence 8855555444455666666666666666555553333333333333221 111 244456666666666665
Q ss_pred C
Q 004950 347 E 347 (722)
Q Consensus 347 ~ 347 (722)
-
T Consensus 155 ~ 155 (262)
T PF14500_consen 155 F 155 (262)
T ss_pred c
Confidence 3
No 98
>KOG1861 consensus Leucine permease transcriptional regulator [Transcription]
Probab=48.04 E-value=2.2e+02 Score=31.87 Aligned_cols=167 Identities=19% Similarity=0.220 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHHHcccCcccccCCccCCCCChhHHHHHHHHHHHHHHH-HHHHHHcChhhHHHHHHHHHHHHhcCCCC
Q 004950 108 QRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVL-LRSVGRVAPEVTQVFIRNSLANAVTFSAD 186 (722)
Q Consensus 108 ~~~~l~~Ll~~li~km~yp~~~~~~~d~~~~~~~ede~~F~e~Rk~l~~l-l~~i~~l~~~l~l~~i~~~l~~~l~~~~~ 186 (722)
-.++|.+-+..+-.|-+=..++. =--++|+.+|+||-+- +++=+.+- .+-.+.+-. ++++.-
T Consensus 302 P~~VL~ksL~~vkdk~k~~~~Y~-----------y~CdQ~KSiRQDLTVQ~IrneFTve--VYEtHARIA----LEkGD~ 364 (540)
T KOG1861|consen 302 PLEVLKKSLCLVKDKWKAKANYA-----------YLCDQFKSIRQDLTVQRIRNEFTVE--VYETHARIA----LEKGDL 364 (540)
T ss_pred CHHHHHHHHHHHHHHHHhhccHH-----------HHHHHHHHHhhhhhhheeccceeee--eehhhhHHH----HhcCCH
Confidence 44567777766655554332221 2457899999999642 33322221 111111111 233222
Q ss_pred CChhhHHHHHHHHHHhcccCchhhhh-----------cc-cccHHhHHHHHHhCCCCCCChhHHH----HHHHHHHHhhH
Q 004950 187 RNVEEVEAALTLLYALGESMSEEAMR-----------TG-AGHLSELVPMLLQTKLPCHSNRLVA----LVYLETVTRYM 250 (722)
Q Consensus 187 ~~W~~~EaaL~~l~~~gE~i~~~~~~-----------~~-~~~l~~l~~~l~~~~i~~~~hp~V~----~~~~e~i~RY~ 250 (722)
..+..--.-|..|| +|+++..... +. ...+-.+|..|-. -....|.|+ .-..+++|-|+
T Consensus 365 ~EfNQCQtQLk~LY--~egipg~~~EF~AYriLY~i~tkN~~di~sll~~lt~---E~ked~~V~hAL~vR~A~~~GNY~ 439 (540)
T KOG1861|consen 365 EEFNQCQTQLKALY--SEGIPGAYLEFTAYRILYYIFTKNYPDILSLLRDLTE---EDKEDEAVAHALEVRSAVTLGNYH 439 (540)
T ss_pred HHHHHHHHHHHHHH--ccCCCCchhhHHHHHHHHHHHhcCchHHHHHHHhccH---hhccCHHHHHHHHHHHHHHhccHH
Confidence 34555556677777 5555543100 00 0112222222211 112233444 44678999999
Q ss_pred HHHhh---cCCChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhhccch-HHHHHHHH
Q 004950 251 KFIQE---HTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLV-PFIENILQ 308 (722)
Q Consensus 251 ~~~~~---~p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L~-~~~~~il~ 308 (722)
.||.. -|.+=.-++..|++ +-|..| +.-+||++|+.+. .|+-..+.
T Consensus 440 kFFrLY~~AP~M~~yLmdlF~e---------rER~~A---l~ii~KsyrP~i~~~fi~~~la 489 (540)
T KOG1861|consen 440 KFFRLYLTAPNMSGYLMDLFLE---------RERKKA---LTIICKSYRPTITVDFIASELA 489 (540)
T ss_pred HHHHHHhhcccchhHHHHHHHH---------HHHHHH---HHHHHHHcCCCccHHHHhhhhh
Confidence 99984 36666777788882 334444 8899999998884 56655443
No 99
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.49 E-value=5.7e+02 Score=30.68 Aligned_cols=219 Identities=15% Similarity=0.133 Sum_probs=0.0
Q ss_pred HHHHHccCCCChhhhHHHHHHhHHHHHHHHHHHHHhhhccCCchhhhHHHhHHHHHHHHHHhhhccCCCccCCCcchHHH
Q 004950 340 IGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGL 419 (722)
Q Consensus 340 ig~Lis~~~~~~e~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~lakgf~~~~~~~~~~~~~~ 419 (722)
+|+|... +=.+++.+.+-.+..-+.++++. .....+.-++.++|.++ ..+
T Consensus 89 iGYLaam--LlLdE~qdvllLltNslknDL~s--------------~nq~vVglAL~alg~i~--------------s~E 138 (866)
T KOG1062|consen 89 IGYLAAM--LLLDERQDLLLLLTNSLKNDLNS--------------SNQYVVGLALCALGNIC--------------SPE 138 (866)
T ss_pred HHHHHHH--HHhccchHHHHHHHHHHHhhccC--------------CCeeehHHHHHHhhccC--------------CHH
Q ss_pred HHHHHHHHHHHHHhcCCCChhHHhHHHHHHHHHHHhcCcccccchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHhhhHH
Q 004950 420 MFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEPKEMAGFLVLLNQLICKFNTLVH 499 (722)
Q Consensus 420 ~~~~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~lg~~v~p~lp~li~~ll~~~~~~~~~~fL~~~~qli~~f~~~~~ 499 (722)
+....+|-|-+.++ .+++-||-+|.-|.+|++....+.+--++|.... ++..-..-=+..-+.++-.++..--+.+.
T Consensus 139 mardlapeVe~Ll~--~~~~~irKKA~Lca~r~irK~P~l~e~f~~~~~~-lL~ek~hGVL~~~l~l~~e~c~~~~~~l~ 215 (866)
T KOG1062|consen 139 MARDLAPEVERLLQ--HRDPYIRKKAALCAVRFIRKVPDLVEHFVIAFRK-LLCEKHHGVLIAGLHLITELCKISPDALS 215 (866)
T ss_pred HhHHhhHHHHHHHh--CCCHHHHHHHHHHHHHHHHcCchHHHHhhHHHHH-HHhhcCCceeeeHHHHHHHHHhcCHHHHH
Q ss_pred HHHHhhhHHHHHHHHhhccCCCCCCCCC-CCCHHHHHHHHH-------------HHHHHHHHHHHHhcCCCeeecCCCCc
Q 004950 500 DILDEVFPAIAGRIFNIIPRDAFPSGPG-TNTEEIREVQEL-------------QRTLYTFLHVIATHDLSSVFLSPKSR 565 (722)
Q Consensus 500 ~~l~~ll~~l~~~v~~~l~~~~~~~~p~-~~~d~~r~~~~l-------------~r~y~~fl~~i~~~~~~~vl~s~~~~ 565 (722)
-+=+ +.+.|+.++=++....--++... .++|-+-+.+-| .+.....+.++.+ -++.++
T Consensus 216 ~fr~-l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvat-------ntdssk 287 (866)
T KOG1062|consen 216 YFRD-LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVAT-------NTDSSK 287 (866)
T ss_pred HHHH-HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHh-------cccccc
Q ss_pred CChHHHHH-HHHHhhcCCCchHHHHHHHHHHHHHH
Q 004950 566 GYLDPIMQ-LLLYTSCNHKDYLVRKACVQIFIRLI 599 (722)
Q Consensus 566 ~~l~~~l~-~l~~~~~~~~d~~~~k~a~~~l~~li 599 (722)
..=+.||- ++.....-.+++...-.|+.++.+|+
T Consensus 288 N~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL 322 (866)
T KOG1062|consen 288 NAGNAILYECVRTIMDIRSNSGLRVLAINILGKFL 322 (866)
T ss_pred cchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHh
No 100
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=45.57 E-value=70 Score=36.55 Aligned_cols=60 Identities=12% Similarity=0.258 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHhhHHHHhh-cC---CChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhhc
Q 004950 236 RLVALVYLETVTRYMKFIQE-HT---QYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKA 297 (722)
Q Consensus 236 p~V~~~~~e~i~RY~~~~~~-~p---~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~ 297 (722)
|.+.--.+-.+.|+-+|-.. .| ++..+.+-.++ ||+..++++||.|++..+.++.--.|.
T Consensus 61 ~si~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~l--Rg~eskdk~VR~r~lqila~~~d~v~e 124 (885)
T COG5218 61 PSIPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHLL--RGTESKDKKVRKRSLQILALLSDVVRE 124 (885)
T ss_pred CCcHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHH--hcccCcchhHHHHHHHHHHHHHHhcch
Confidence 34444445566677776543 35 47888888889 999999999999999999887765553
No 101
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=45.43 E-value=3.2e+02 Score=27.07 Aligned_cols=141 Identities=14% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhccCCCccCCCcchHHHHHHHHHHHHHHHHhcCCCChhHHhHHHHHHHHHHHhcCcc----cccchHH--
Q 004950 393 QIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGAS----VFPYLPK-- 466 (722)
Q Consensus 393 ~~i~~l~~lakgf~~~~~~~~~~~~~~~~~~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~lg~~----v~p~lp~-- 466 (722)
+++..++.+...+.. .....+.+++..+-..-+ ..+...++.+..++.-.|..+|++ ++|+-..
T Consensus 19 ~vl~v~s~lf~~lg~--------~~~~~l~~~L~~l~~lr~--~~~f~~~~~~e~~lgaAi~amGpe~vL~~lPLnl~~~ 88 (198)
T PF08161_consen 19 EVLNVLSALFEKLGE--------RSSPLLKPILKTLGDLRE--SEDFSFRKELEQVLGAAIRAMGPEQVLSILPLNLDNA 88 (198)
T ss_pred HHHHHHHHHHHHHhh--------hccHHHHHHHHHHHHHHc--CCCcchHHHHHHHHHHHHHHCCHHHHHHHCCCCccCC
Q ss_pred ---------HHHHHHhcCChhhHHHHH-------HHHHHHHHHHhhhHHHHHHhhhHHHHHHHHhhccCCCCCCCCCCCC
Q 004950 467 ---------ALEQLLAESEPKEMAGFL-------VLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNT 530 (722)
Q Consensus 467 ---------li~~ll~~~~~~~~~~fL-------~~~~qli~~f~~~~~~~l~~ll~~l~~~v~~~l~~~~~~~~p~~~~ 530 (722)
+++.|-......+++-|. ..+.+.+.+++..-.+.-...+..+...++++|. ++.+.|.+.+
T Consensus 89 ~~~~~~raWLLPlLr~~i~~~~L~fF~~~~lPla~~~~~~~~~~~~~~~~~~ak~~~~l~~QlWslLP--~FC~~P~D~~ 166 (198)
T PF08161_consen 89 DDSQPGRAWLLPLLRDHIRNASLSFFVEEFLPLARRLRQKAQKASEAGKSVEAKIYETLVQQLWSLLP--GFCNYPTDLA 166 (198)
T ss_pred CcCCcccchhHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhH--HhcCCcccHH
Q ss_pred HHHHHHHHHHHHHHH
Q 004950 531 EEIREVQELQRTLYT 545 (722)
Q Consensus 531 d~~r~~~~l~r~y~~ 545 (722)
+.+++...+.-..+.
T Consensus 167 ~~F~~~a~~L~~~L~ 181 (198)
T PF08161_consen 167 ESFPSFAKLLGNALY 181 (198)
T ss_pred HHHHHHHHHHHHHHh
No 102
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=44.66 E-value=5.4e+02 Score=30.14 Aligned_cols=144 Identities=16% Similarity=0.128 Sum_probs=85.0
Q ss_pred HhcCCCChhHHhHHHHHH---HHHHHhcCcccc--cchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHhhhHHHHHHhhh
Q 004950 432 LVVFPKVEPLRCKVTSFI---HRMVDTLGASVF--PYLPKALEQLLAESEPKEMAGFLVLLNQLICKFNTLVHDILDEVF 506 (722)
Q Consensus 432 l~~~~~~~~Vre~~~~~~---~r~v~~lg~~v~--p~lp~li~~ll~~~~~~~~~~fL~~~~qli~~f~~~~~~~l~~ll 506 (722)
...+.++..++.++|-++ .|.|..+..... -...+++. ++...+..-++..++.+.-+|.+|++--..++..
T Consensus 384 ~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvq-ll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~-- 460 (678)
T KOG1293|consen 384 CLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQ-LLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRN-- 460 (678)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHH-HhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHc--
Confidence 345678888999998876 788888754421 11222333 3333444456778888999999998642223222
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeeecCCCCcCChHHHHHHHHHhhcCCCchH
Q 004950 507 PAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYL 586 (722)
Q Consensus 507 ~~l~~~v~~~l~~~~~~~~p~~~~d~~r~~~~l~r~y~~fl~~i~~~~~~~vl~s~~~~~~l~~~l~~l~~~~~~~~d~~ 586 (722)
..+..+.+.+.... + + +++.+..++.+++= +....+.-+ .+..+-...+..-.+-+|+.
T Consensus 461 -ngId~l~s~~~~~~--------~-n------~r~~~~~~Lr~l~f-~~de~~k~~----~~~ki~a~~i~~l~nd~d~~ 519 (678)
T KOG1293|consen 461 -NGIDILESMLTDPD--------F-N------SRANSLWVLRHLMF-NCDEEEKFQ----LLAKIPANLILDLINDPDWA 519 (678)
T ss_pred -CcHHHHHHHhcCCC--------c-h------HHHHHHHHHHHHHh-cchHHHHHH----HHHHhhHHHHHHHHhCCCHH
Confidence 24445555555321 1 1 56777777777653 222221111 12223334443345679999
Q ss_pred HHHHHHHHHHHHH
Q 004950 587 VRKACVQIFIRLI 599 (722)
Q Consensus 587 ~~k~a~~~l~~li 599 (722)
++.-||+.+++++
T Consensus 520 Vqeq~fqllRNl~ 532 (678)
T KOG1293|consen 520 VQEQCFQLLRNLT 532 (678)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999998
No 103
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=43.40 E-value=2.6e+02 Score=31.30 Aligned_cols=179 Identities=12% Similarity=0.147 Sum_probs=96.1
Q ss_pred HHHHHHhhHHHHhhcCCChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhhhhhhccCC
Q 004950 242 YLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMN 321 (722)
Q Consensus 242 ~~e~i~RY~~~~~~~p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L~~~~~~il~~l~~ll~~~~~~~ 321 (722)
-+.+-+.++-|-++-.+.|..+++.+-+..- +.+.++.-|. +...|+.=...|..+.+--+..+-+.- . +
T Consensus 313 ~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~--~~~k~laLrv---L~~ml~~Q~~~l~DstE~ai~K~Leaa---~--d 382 (516)
T KOG2956|consen 313 KMLCEGSFSVWEQHFAEILLLLLEVLSDSED--EIIKKLALRV---LREMLTNQPARLFDSTEIAICKVLEAA---K--D 382 (516)
T ss_pred HHHHccchhHHHHHHHHHHHHHHHHHccchh--hHHHHHHHHH---HHHHHHhchHhhhchHHHHHHHHHHHH---h--C
Confidence 3444456677766666667777766653111 2333343333 666666666777777776555543321 1 1
Q ss_pred cccccCCCCchhhHHH-HHHHHHHccCCCChhhhHHHHHHhHHHHHHHHHHHHHhhhccCCchhhhHHHhHHHHHHHHHH
Q 004950 322 YASKELSGSEDGSHIF-EAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINA 400 (722)
Q Consensus 322 ~~~~~~~~~~d~l~L~-Eaig~Lis~~~~~~e~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 400 (722)
.. +.-..+- |....+++.. .|.....- +.|+ +.. .|+ ... .-+|.++.+
T Consensus 383 s~-------~~v~~~Aeed~~~~las~--~P~~~I~~----i~~~-------Ilt----~D~--~~~----~~~iKm~Tk 432 (516)
T KOG2956|consen 383 SQ-------DEVMRVAEEDCLTTLASH--LPLQCIVN----ISPL-------ILT----ADE--PRA----VAVIKMLTK 432 (516)
T ss_pred Cc-------hhHHHHHHHHHHHHHHhh--CchhHHHH----HhhH-------Hhc----Ccc--hHH----HHHHHHHHH
Confidence 11 1111111 2223333331 33232222 1111 111 121 111 234445555
Q ss_pred hhhccCCCccCCCcchHHHHHHHHHHHHHHHHhcCCCChhHHhHHHHHHHHHHHhcC-cccccchHHHHH
Q 004950 401 LSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLG-ASVFPYLPKALE 469 (722)
Q Consensus 401 lakgf~~~~~~~~~~~~~~~~~~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~lg-~~v~p~lp~li~ 469 (722)
+.++++. .....+...++|.+.+..+ ..+..||..+-+|+--|+.-+| ..+.||+.++-.
T Consensus 433 l~e~l~~-------EeL~~ll~diaP~~iqay~--S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~ 493 (516)
T KOG2956|consen 433 LFERLSA-------EELLNLLPDIAPCVIQAYD--STSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTS 493 (516)
T ss_pred HHhhcCH-------HHHHHhhhhhhhHHHHHhc--CchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccH
Confidence 5444431 2345566678888877766 5678999999999999999999 899999877654
No 104
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=43.16 E-value=1.6e+02 Score=35.29 Aligned_cols=73 Identities=19% Similarity=0.274 Sum_probs=47.2
Q ss_pred hhHHHHHHHHHHHhhHHHHhhcCCChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhhccch-HHHHHHHHHh
Q 004950 235 NRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLV-PFIENILQSL 310 (722)
Q Consensus 235 hp~V~~~~~e~i~RY~~~~~~~p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L~-~~~~~il~~l 310 (722)
|-.+|.+..-.+--.++-+.. +-+....|+.+. .+..++.+.||-.+++.|.++.+-+..... .++-++++.+
T Consensus 570 ~y~~R~t~l~si~~la~v~g~-ei~~~~Llp~~~--~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L 643 (759)
T KOG0211|consen 570 NYLVRMTTLFSIHELAEVLGQ-EITCEDLLPVFL--DLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLPLLETL 643 (759)
T ss_pred ccchhhHHHHHHHHHHHHhcc-HHHHHHHhHHHH--HhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHh
Confidence 557777777777755555443 222333333444 455578888999999999999997766554 3555555555
No 105
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=42.93 E-value=2.6e+02 Score=32.14 Aligned_cols=123 Identities=15% Similarity=0.255 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHcChh---hHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhcccCchhhhhcccccHHhHHHHH
Q 004950 149 EYRKDLLVLLRSVGRVAPE---VTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPML 225 (722)
Q Consensus 149 e~Rk~l~~ll~~i~~l~~~---l~l~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l 225 (722)
+|.+-+.|.+-.+..-.|+ ..|+.+...|. +-+.=+.++..|+-+|+..|.. +++......+...+
T Consensus 428 eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIE---------Dcey~~I~vrIL~iLG~EgP~a--~~P~~yvrhIyNR~ 496 (898)
T COG5240 428 EFKKYMVDAISDAMENDPDSKERALEVLCTFIE---------DCEYHQITVRILGILGREGPRA--KTPGKYVRHIYNRL 496 (898)
T ss_pred hHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHh---------hcchhHHHHHHHHHhcccCCCC--CCcchHHHHHHHHH
Q ss_pred HhCCCCCCChhHHHHHHHHHHHhhHHHHhhcCCChHHHHHHhccccCCCCCCchhHHHHHHHHHHH
Q 004950 226 LQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRV 291 (722)
Q Consensus 226 ~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~~p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~ 291 (722)
+- .+..||.++...+.+++ +..+.-.+|.-....+. |++.+.+..||-||++++..+
T Consensus 497 iL------EN~ivRsaAv~aLskf~--ln~~d~~~~~sv~~~lk-RclnD~DdeVRdrAsf~l~~~ 553 (898)
T COG5240 497 IL------ENNIVRSAAVQALSKFA--LNISDVVSPQSVENALK-RCLNDQDDEVRDRASFLLRNM 553 (898)
T ss_pred HH------hhhHHHHHHHHHHHHhc--cCccccccHHHHHHHHH-HHhhcccHHHHHHHHHHHHhh
No 106
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=42.69 E-value=6e+02 Score=29.52 Aligned_cols=163 Identities=10% Similarity=0.053 Sum_probs=88.7
Q ss_pred chhHHHHHHHHHHHHH-Hhhccch------HHHHHHHHHhhhhhhhhccCCcccccCCCCchhhHHHHHHHHHHccCCCC
Q 004950 278 VHVSRRASYLFMRVVK-LLKAKLV------PFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVP 350 (722)
Q Consensus 278 ~~V~~ra~ylf~r~~k-~~r~~L~------~~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~L~Eaig~Lis~~~~~ 350 (722)
+.+|+++..=+.+.+. -|+.... +.+++....+..+|..-.. . .......++..+.|.++.+.+....+
T Consensus 371 ~~lr~~~~~~i~~~~~~~~~~~~~~~~~s~g~l~~~~~~LsalL~~c~~---~-~~~~d~~~~~~i~~ii~~lw~~~~~~ 446 (559)
T PF14868_consen 371 DELRKQIVQEIFTLCFAFCQKWLSPSSCSLGELGQLNFALSALLQVCNS---S-GSTIDMKDQTFIVEIISQLWSFLSSK 446 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCcCcchHhHHHHHHHHHHHHhcc---c-ccccCHHHHHHHHHHHHHHHHHhchh
Confidence 3366666443333332 2343332 3456666666555543221 1 11223456789999999999986444
Q ss_pred hhhhHHHHHHhHHHHHHHHHHHHHhhhccCCchhhhH-HH-------------hHHHHHHHHHHhhhccCCCccCCCcch
Q 004950 351 PEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAK-FA-------------NIQQIIMAINALSKGFNERLVTSSRPA 416 (722)
Q Consensus 351 ~e~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~-~~-------------~~~~~i~~l~~lakgf~~~~~~~~~~~ 416 (722)
......+++..+..++.-+...++.-.+ +.... +. ---.++.++|+++|-|-+... +.
T Consensus 447 ~v~~~~~l~~~~~~lL~l~~~~~~~l~~----~~i~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~---q~- 518 (559)
T PF14868_consen 447 QVSSQPYLQQTLSLLLSLLSFFIQLLDP----QLIEQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESD---QN- 518 (559)
T ss_pred hhccchHHHHHHHHHHHHHHHHHHhcCh----HHHHHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccc---cc-
Confidence 4445577777777666555544432211 00000 00 011234555666555543211 11
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHhHHHHHHHHHHHhc
Q 004950 417 IGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTL 456 (722)
Q Consensus 417 ~~~~~~~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~l 456 (722)
.+..+.|.++...|. .++.-+++.|.-+|+++.+..
T Consensus 519 --~~~~~Ls~Lf~~LL~--d~~Wll~q~ALeAF~~FAe~T 554 (559)
T PF14868_consen 519 --PVSPALSELFHMLLA--DRHWLLHQHALEAFGQFAERT 554 (559)
T ss_pred --hhhhHHHHHHHHHhc--CCcHHHHHHHHHHHHHHhccC
Confidence 245566888888887 888999999999998886543
No 107
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.47 E-value=5.7e+02 Score=29.22 Aligned_cols=229 Identities=15% Similarity=0.231 Sum_probs=121.4
Q ss_pred HHHHHHHHccCCCChhhhHHHH-HHhHHHHHHHHHHHHHhhhccCCchhhhHHHhHHHHHHHHHHhhhccCCCccCCCcc
Q 004950 337 FEAIGLLIGMEDVPPEKQSDYL-SSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRP 415 (722)
Q Consensus 337 ~Eaig~Lis~~~~~~e~~~~~l-~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~lakgf~~~~~~~~~~ 415 (722)
.=|+|.+++- ++.-+--.+ ..++.|++..+..-. .+.-+.+++-+++.+.+|=.+ .|
T Consensus 173 vWALgNIagd---s~~~Rd~vl~~g~l~pLl~~l~~~~-------------~~~~lRn~tW~LsNlcrgk~P------~P 230 (514)
T KOG0166|consen 173 VWALGNIAGD---SPDCRDYVLSCGALDPLLRLLNKSD-------------KLSMLRNATWTLSNLCRGKNP------SP 230 (514)
T ss_pred HHHHhccccC---ChHHHHHHHhhcchHHHHHHhcccc-------------chHHHHHHHHHHHHHHcCCCC------CC
Confidence 3466666664 333332223 367777776663211 112245677888888877542 23
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCChhHHhHHHHHHHHHHHhcCccc-----ccchHHHHHHHHhcCChhhHHHHHHHHHHH
Q 004950 416 AIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASV-----FPYLPKALEQLLAESEPKEMAGFLVLLNQL 490 (722)
Q Consensus 416 ~~~~~~~~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~lg~~v-----~p~lp~li~~ll~~~~~~~~~~fL~~~~ql 490 (722)
-......++|++..++. ..+..|..-+|-+++.+..-..+.+ ...+|.++. ++.+.+.+-..-.|..+|-|
T Consensus 231 -~~~~v~~iLp~L~~ll~--~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~-lL~~~~~~v~~PaLRaiGNI 306 (514)
T KOG0166|consen 231 -PFDVVAPILPALLRLLH--STDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVD-LLGHSSPKVVTPALRAIGNI 306 (514)
T ss_pred -cHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHH-HHcCCCcccccHHHhhccce
Confidence 34678899999999987 7888898888887776664432221 345677777 55555543333455555655
Q ss_pred HHHHhhhHHHHHHhhhHHHHHHHHhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeeecCCCCcCChHH
Q 004950 491 ICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDP 570 (722)
Q Consensus 491 i~~f~~~~~~~l~~ll~~l~~~v~~~l~~~~~~~~p~~~~d~~r~~~~l~r~y~~fl~~i~~~~~~~vl~s~~~~~~l~~ 570 (722)
+..-......+++.-+.| .+-.++... | .+. ++|.-.=+++.|...+...+ -.--+.+.++.
T Consensus 307 vtG~d~QTq~vi~~~~L~---~l~~ll~~s-----~---~~~------ikkEAcW~iSNItAG~~~qi-qaVida~l~p~ 368 (514)
T KOG0166|consen 307 VTGSDEQTQVVINSGALP---VLSNLLSSS-----P---KES------IKKEACWTISNITAGNQEQI-QAVIDANLIPV 368 (514)
T ss_pred eeccHHHHHHHHhcChHH---HHHHHhccC-----c---chh------HHHHHHHHHHHhhcCCHHHH-HHHHHcccHHH
Confidence 542222233344432222 223444421 1 111 44544444444443222111 00001112333
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhCCCCCCCCchhHHHHHHHhh
Q 004950 571 IMQLLLYTSCNHKDYLVRKACVQIFIRLIKDWCARPFVEEKVPGFQSFMIEAF 623 (722)
Q Consensus 571 ~l~~l~~~~~~~~d~~~~k~a~~~l~~li~~~~~~~~~~~~~~gf~~fl~~~~ 623 (722)
++. .+...|-.++|-|.=.++++.. .+.+....|++++.
T Consensus 369 Li~-----~l~~~ef~~rKEAawaIsN~ts---------~g~~~qi~yLv~~g 407 (514)
T KOG0166|consen 369 LIN-----LLQTAEFDIRKEAAWAISNLTS---------SGTPEQIKYLVEQG 407 (514)
T ss_pred HHH-----HHhccchHHHHHHHHHHHhhcc---------cCCHHHHHHHHHcC
Confidence 232 2344677788888777776551 12367788888864
No 108
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=41.48 E-value=4.6e+02 Score=27.88 Aligned_cols=37 Identities=19% Similarity=0.271 Sum_probs=22.2
Q ss_pred hHHhHHHHHHHHHHHhcCcccccchHHHHHHHHhcCC
Q 004950 440 PLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESE 476 (722)
Q Consensus 440 ~Vre~~~~~~~r~v~~lg~~v~p~lp~li~~ll~~~~ 476 (722)
.||-..-..+.+.+.-+|+.+.|.++.++..++.+.+
T Consensus 112 ~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLe 148 (307)
T PF04118_consen 112 QVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLE 148 (307)
T ss_pred hhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccc
Confidence 3444444444444446666667777777777777664
No 109
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=38.61 E-value=2.6e+02 Score=29.20 Aligned_cols=52 Identities=13% Similarity=0.187 Sum_probs=33.5
Q ss_pred CCChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhhccc------hHHHHHHHHHhhhhh
Q 004950 257 TQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKL------VPFIENILQSLQDTI 314 (722)
Q Consensus 257 p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L------~~~~~~il~~l~~ll 314 (722)
|-.+|++|+.+ | +.++.+|.++|.++..|++.+.... .+..+-+.+++.+.+
T Consensus 118 ~liiP~iL~ll-D-----D~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L 175 (282)
T PF10521_consen 118 PLIIPPILNLL-D-----DYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCL 175 (282)
T ss_pred hHHHhhHHHHh-c-----CCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHh
Confidence 44566666433 3 4477899999999999999776554 233444444444444
No 110
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.43 E-value=8.1e+02 Score=29.54 Aligned_cols=219 Identities=17% Similarity=0.223 Sum_probs=110.0
Q ss_pred hHHHHHHHHHHHHH-HhhccchHH-HHHHHHHhhhhhhhhccCCcccccCCCCchhhHHHH---HHHHHHccCCCChhhh
Q 004950 280 VSRRASYLFMRVVK-LLKAKLVPF-IENILQSLQDTIARFTSMNYASKELSGSEDGSHIFE---AIGLLIGMEDVPPEKQ 354 (722)
Q Consensus 280 V~~ra~ylf~r~~k-~~r~~L~~~-~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~L~E---aig~Lis~~~~~~e~~ 354 (722)
.|+|.+.++..-+. .|+..+.|- -..+++.++| .+|..-..+ ++-.++.--+.+++..
T Consensus 503 iRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d-----------------~~D~vV~Ltt~~tlkl~vDD~nF~~dsF 565 (978)
T KOG1993|consen 503 IRRRVAWILGQWVSVQQKLELKPLLYCAFLNLLQD-----------------QNDLVVRLTTARTLKLVVDDWNFSEDSF 565 (978)
T ss_pred HHHHHHHHHhhhhheechHhHHHHHHHHHHHhcCc-----------------cccceeehHHHHHHHHhhhhccCChhhh
Confidence 67888777777765 355555552 3334444433 112222223 4444444444566666
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhhccCCchhhhHHHhHHHHHHHHHHhhhccCCCccCCCcchHHHHHHHHHHHHHHHHhc
Q 004950 355 SDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVV 434 (722)
Q Consensus 355 ~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~lakgf~~~~~~~~~~~~~~~~~~~~~vi~~~l~~ 434 (722)
..++..+..-++.-+++. .. .| +++.-++..-.-|++++.-.. .+..++.+.+-.+-+.
T Consensus 566 lp~lenlf~~lfkll~~~----~e-~D----tk~~VL~~ls~lI~r~~e~I~------------P~~~~ivq~lp~LWe~ 624 (978)
T KOG1993|consen 566 LPYLENLFVLLFKLLKAV----EE-CD----TKTSVLNLLSTLIERVSEHIA------------PYASTIVQYLPLLWEE 624 (978)
T ss_pred hhhHHHHHHHHHHHHHHH----hh-hh----hHHHHHHHHHHHHHHHHHhhh------------HHHHHHHHHHHHHHhh
Confidence 666655555444444332 21 11 121111222222333322221 1222223333333334
Q ss_pred CCCChhHHhHHHHHHHHHHHhcCcccccchHHHHHHHHhcCCh--hhHH------HHHHHHHHHHHHHhhhHHHHHHhhh
Q 004950 435 FPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEP--KEMA------GFLVLLNQLICKFNTLVHDILDEVF 506 (722)
Q Consensus 435 ~~~~~~Vre~~~~~~~r~v~~lg~~v~p~lp~li~~ll~~~~~--~~~~------~fL~~~~qli~~f~~~~~~~l~~ll 506 (722)
+.+.+-.|.+.-..++.+|..+|..-.++=|-+.+.+--++++ +++. .-||.. .. ++...+-| -|
T Consensus 625 s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~--~L-~n~~~l~p----~l 697 (978)
T KOG1993|consen 625 SEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLT--TL-MNSQKLTP----EL 697 (978)
T ss_pred hccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHH--HH-hcccccCH----HH
Confidence 4678899999999999999999998887777777654444432 3322 112222 11 11112222 22
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 004950 507 PAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIAT 552 (722)
Q Consensus 507 ~~l~~~v~~~l~~~~~~~~p~~~~d~~r~~~~l~r~y~~fl~~i~~ 552 (722)
..++.++.-++++ .+|..|-.-.+.++|.-+-+....
T Consensus 698 l~L~p~l~~~iE~---------ste~L~t~l~Ii~sYilLd~~~fl 734 (978)
T KOG1993|consen 698 LLLFPHLLYIIEQ---------STENLPTVLMIISSYILLDNTVFL 734 (978)
T ss_pred HHHHHHHHHHHHh---------hhhhHHHHHHHHHHHHhhccHHHH
Confidence 3344455555554 356777777788888766655543
No 111
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.85 E-value=3.6e+02 Score=30.35 Aligned_cols=134 Identities=15% Similarity=0.225 Sum_probs=66.9
Q ss_pred HHHHHHHHhhccchHHHHHHHHHhhhhhhhhccCCcccccCCCCchhhHHHHHHHHHHccCC--CChhhhHHHHHHhHHH
Q 004950 287 LFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMED--VPPEKQSDYLSSLLTP 364 (722)
Q Consensus 287 lf~r~~k~~r~~L~~~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~L~Eaig~Lis~~~--~~~e~~~~~l~~ll~p 364 (722)
++.+.++...+|=+|.-..++.-+.++..+.. ..++.-+..|..|++.-..- ++-++..+- ..+++-
T Consensus 483 lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~----------nd~~E~F~~EClGtlanL~v~dldw~~ilq~-~~LvPw 551 (791)
T KOG1222|consen 483 LLMKVVRNISQHEGATQNMFIDYVGDLAGIAK----------NDNSESFGLECLGTLANLKVTDLDWAKILQS-ENLVPW 551 (791)
T ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHHhh----------cCchHHHHHHHHHHHhhcccCCCCHHHHHhh-ccccHH
Confidence 45566666666666655666666666554332 12234488888888877531 222222221 122232
Q ss_pred HHHHHHHHHHhhhccCCchhhhHHHhHHHHHHHHHHhhhccCCCccCCCcchHHHHHHH--HHHHHHHHHhcCCCChhHH
Q 004950 365 LCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQ--TLDVLLQILVVFPKVEPLR 442 (722)
Q Consensus 365 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~lakgf~~~~~~~~~~~~~~~~~~--~~~vi~~~l~~~~~~~~Vr 442 (722)
+-+++..+. +++++ +.+++.++|++|.... |...+.. +.+.+.+.++.-..+.++.
T Consensus 552 ~k~~L~pga-------~eddL-----vL~~vi~~GT~a~d~~----------cA~Lla~a~~i~tlieLL~a~QeDDEfV 609 (791)
T KOG1222|consen 552 MKTQLQPGA-------DEDDL-----VLQIVIACGTMARDLD----------CARLLAPAKLIDTLIELLQACQEDDEFV 609 (791)
T ss_pred HHHhhcCCc-------cchhh-----hhHHHHHhhhhhhhhH----------HHHHhCccccHHHHHHHHHhhcccchHH
Confidence 222222111 22221 4578888998885443 4444444 5566666666655554433
Q ss_pred hHHHHHHHHHH
Q 004950 443 CKVTSFIHRMV 453 (722)
Q Consensus 443 e~~~~~~~r~v 453 (722)
-.....|-.|+
T Consensus 610 ~QiiyVF~Q~l 620 (791)
T KOG1222|consen 610 VQIIYVFLQFL 620 (791)
T ss_pred HHHHHHHHHHH
Confidence 33434443333
No 112
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=36.40 E-value=6.1e+02 Score=31.87 Aligned_cols=147 Identities=12% Similarity=0.182 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHHHhcC--CCChhHHhHHHHHHHHHHHhcCcccccchHHHHHHHHhcCChhhHHH-HHHHHHHHHHHH
Q 004950 418 GLMFKQTLDVLLQILVVF--PKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEPKEMAG-FLVLLNQLICKF 494 (722)
Q Consensus 418 ~~~~~~~~~vi~~~l~~~--~~~~~Vre~~~~~~~r~v~~lg~~v~p~lp~li~~ll~~~~~~~~~~-fL~~~~qli~~f 494 (722)
..++.+..|++..++.++ .++++++.+|.-++.||...--.+.--.+|-+++.|=.+..+ .+.+ ..--+|-+.-.|
T Consensus 914 k~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces~l~llftimeksp~p-~IRsN~VvalgDlav~f 992 (1251)
T KOG0414|consen 914 KSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCESHLPLLFTIMEKSPSP-RIRSNLVVALGDLAVRF 992 (1251)
T ss_pred HHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCc-eeeecchheccchhhhc
Confidence 346777889999999774 456789999999999988777677777888888854433322 1111 001112222223
Q ss_pred hhhHHHHHHhhhHHHHHHHHhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeeecCCCCcCChHHHHHH
Q 004950 495 NTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQL 574 (722)
Q Consensus 495 ~~~~~~~l~~ll~~l~~~v~~~l~~~~~~~~p~~~~d~~r~~~~l~r~y~~fl~~i~~~~~~~vl~s~~~~~~l~~~l~~ 574 (722)
..++.|..++++..|... .+ +++|.-+-.+++++.++.-.| ++++... +
T Consensus 993 --------pnlie~~T~~Ly~rL~D~--------~~-------~vRkta~lvlshLILndmiKV------KGql~eM--A 1041 (1251)
T KOG0414|consen 993 --------PNLIEPWTEHLYRRLRDE--------SP-------SVRKTALLVLSHLILNDMIKV------KGQLSEM--A 1041 (1251)
T ss_pred --------ccccchhhHHHHHHhcCc--------cH-------HHHHHHHHHHHHHHHhhhhHh------cccHHHH--H
Confidence 236667778888887732 22 399999999999999987533 4444322 2
Q ss_pred HHHhhcCCCchHHHHHHHHHHHHHH
Q 004950 575 LLYTSCNHKDYLVRKACVQIFIRLI 599 (722)
Q Consensus 575 l~~~~~~~~d~~~~k~a~~~l~~li 599 (722)
++ ..-+++.+...|=+||..+-
T Consensus 1042 ~c---l~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 1042 LC---LEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred HH---hcCCcHHHHHHHHHHHHHhh
Confidence 22 34477788888888888765
No 113
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.33 E-value=8.8e+02 Score=28.70 Aligned_cols=247 Identities=14% Similarity=0.243 Sum_probs=130.5
Q ss_pred hhHHHHHHHHHHccCCCChhhhHHHHHHhHHHHHHHHHHHHHhhhccCCchhhhHHHhHHHHHHHHHHhhhccCCCccCC
Q 004950 333 GSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTS 412 (722)
Q Consensus 333 ~l~L~Eaig~Lis~~~~~~e~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~lakgf~~~~~~~ 412 (722)
+--.|+|+|.|+-.. ..+....++.++.|+.+.++..++--+.+.-+++ ++..++.-+.+=-+|..-.....
T Consensus 658 RTTFY~al~rLl~~d---~sede~~fe~fm~PLt~~fe~v~~~~~nn~f~ee-----~vK~~liGL~RDLRGiA~A~~tk 729 (1082)
T KOG1410|consen 658 RTTFYTALTRLLMVD---LSEDEDMFERFMLPLTDAFEGVLQVFQNNCFEEE-----QVKRILIGLCRDLRGIAFASNTK 729 (1082)
T ss_pred HhHHHHHHHHHHhhc---ccccHHHHHHHHHHHHHHHHHHHHHhccccccHH-----HHHHHHHHHHHHhhhhhhhhccc
Confidence 457899999999873 2233456788999999999988875543221221 12233322222112221110011
Q ss_pred C--cchHHHHHHHHHHHHHHHHhcCCCChhHHhHHHHHHHHHHHhcC------------cccccchHHHHHHH----Hhc
Q 004950 413 S--RPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLG------------ASVFPYLPKALEQL----LAE 474 (722)
Q Consensus 413 ~--~~~~~~~~~~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~lg------------~~v~p~lp~li~~l----l~~ 474 (722)
. .--...+.-..+|++.+..+.|.+.+++.--+-.+++-++..=. --++.-.++++... ++-
T Consensus 730 tsy~~LFdWmYP~~mpllq~~Ve~W~~~p~vtTPiLklmaE~v~NrsQRL~Fd~SSpngiLLFrEtSKmv~~YG~riL~L 809 (1082)
T KOG1410|consen 730 TSYQMLFDWMYPEYMPLLQRAVEKWYGCPDVTTPILKLMAELVQNRSQRLKFDVSSPNGILLFRETSKMVSIYGNRILQL 809 (1082)
T ss_pred hHHHHHHHHhhhhHHHHHHHHHHhcCCCCccccHHHHHHHHHHhhhHhheecccCCCceeEEehhhhHHHHHHhhHhhcc
Confidence 0 00012245567888888899999888777666666655554311 11111222333222 111
Q ss_pred CCh----------hh-HHHHHHHHHHHHHHHhhh------HHHHHHhhhHHHHHHHHhhccCCCCCCCCCCCCHHHHHHH
Q 004950 475 SEP----------KE-MAGFLVLLNQLICKFNTL------VHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQ 537 (722)
Q Consensus 475 ~~~----------~~-~~~fL~~~~qli~~f~~~------~~~~l~~ll~~l~~~v~~~l~~~~~~~~p~~~~d~~r~~~ 537 (722)
.+. +. -.+|.-+-+.++..|-+- -..-++..+..++.-.. -+ | -+++-.-+
T Consensus 810 p~vskdqiY~~kyKgI~v~~siLk~AL~GnYv~FGVFrLYGD~~l~daL~~fvKm~l-sI--------p---~sD~l~Y~ 877 (1082)
T KOG1410|consen 810 PEVSKDQIYAEKYKGISVCFSILKNALSGNYVNFGVFRLYGDSALDDALQTFVKMLL-SI--------P---HSDLLSYR 877 (1082)
T ss_pred cCcchhhhHHHHhcCceehHHHHHHHhhcCccccceeeeeCchHHHHHHHHHHHHHh-cC--------C---HHHHHhHH
Confidence 111 01 123333333333222110 01223334443322221 11 1 13556777
Q ss_pred HHHHHHHHHHHHHHhcCCCeeecCCCCcCChHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHh
Q 004950 538 ELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDW 602 (722)
Q Consensus 538 ~l~r~y~~fl~~i~~~~~~~vl~s~~~~~~l~~~l~~l~~~~~~~~d~~~~k~a~~~l~~li~~~ 602 (722)
-+-++||.|+-.+...++. . +....++.|..++.++-. .+..-|+.+.-.|..-+-.+++-.
T Consensus 878 Klsqsyy~llE~l~qdhm~-F-i~nL~~~vfm~ll~Si~s-GLt~lDt~v~ssccsslD~i~tYl 939 (1082)
T KOG1410|consen 878 KLSQSYYNLLEVLTQDHMP-F-ITNLEPDVFMYLLRSISS-GLTSLDTIVSSSCCSSLDTIVTYL 939 (1082)
T ss_pred HHHHHHhhHHHHHHhccch-h-hhcCcHHHHHHHHHHHHh-ccchhhHHHHhHHHHHHHHHHHHH
Confidence 8999999999999988864 3 333334456667776664 466788888888998888877543
No 114
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=32.36 E-value=4e+02 Score=27.99 Aligned_cols=136 Identities=15% Similarity=0.139 Sum_probs=76.9
Q ss_pred HHHHHHhcccCchhhhhcccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhh-cCCChHHHHHHhccccCCC
Q 004950 196 LTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQE-HTQYIPVVLAAFLDERGIH 274 (722)
Q Consensus 196 L~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~-~p~~L~~vL~~~l~~~Gl~ 274 (722)
|+..+.+=|.+... ...+..+..++..|+..++. .+++.||-..++.+|=|+=.=.. -.++++-.+..+ .
T Consensus 4 L~i~~~lL~~~~~~--~~~~~~l~~ll~~lI~P~v~-~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~------~ 74 (298)
T PF12719_consen 4 LSITQSLLENVSSS--LSPNISLESLLDSLILPAVQ-SSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQAL------Q 74 (298)
T ss_pred HHHHHHHHHhcccc--CCCcchHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH------H
Confidence 44444454554411 12234566777776643333 46789999999999988876432 234455444444 2
Q ss_pred CCCchhHHHHHHHHHHHHHHhhccchHH---------HHHHHHHhhhhhhhhccCCcccccCCCCchhhHHHHHHHHHHc
Q 004950 275 HPNVHVSRRASYLFMRVVKLLKAKLVPF---------IENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIG 345 (722)
Q Consensus 275 ~~~~~V~~ra~ylf~r~~k~~r~~L~~~---------~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~L~Eaig~Lis 345 (722)
..+..|+..|..++..+.-.-....... ...+++.+...+... .++=|....||++.|+-
T Consensus 75 ~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-----------~~~~~~~a~EGl~KLlL 143 (298)
T PF12719_consen 75 KDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSE-----------NPELQAIAVEGLCKLLL 143 (298)
T ss_pred hCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHHHh
Confidence 3467788888777777766555444321 123444444443210 12236677778777777
Q ss_pred cCCCCh
Q 004950 346 MEDVPP 351 (722)
Q Consensus 346 ~~~~~~ 351 (722)
.....+
T Consensus 144 ~~~i~~ 149 (298)
T PF12719_consen 144 SGRISD 149 (298)
T ss_pred cCCCCc
Confidence 654433
No 115
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=32.10 E-value=1.8e+02 Score=27.55 Aligned_cols=51 Identities=25% Similarity=0.468 Sum_probs=34.1
Q ss_pred HHHHHHHHHhcCCCChhHHhHHHHHHHHHHHhcCcccccchHHHHHHHHhcC
Q 004950 424 TLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAES 475 (722)
Q Consensus 424 ~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~lg~~v~p~lp~li~~ll~~~ 475 (722)
++..+++++.- ++...-..++...+-.+..++|....||+|+++..++...
T Consensus 87 vi~~L~~iL~D-~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i 137 (160)
T PF11865_consen 87 VINALMRILRD-PSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVI 137 (160)
T ss_pred HHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHH
Confidence 33444444442 3334445555666666668899999999999999988754
No 116
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=32.10 E-value=2.7e+02 Score=23.79 Aligned_cols=91 Identities=19% Similarity=0.181 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHcChhhHHHHHH----HHHHHHhcCCCCCChhhHHHHHHHHHHhcccCchhhhh-cccccHHhHHHH
Q 004950 150 YRKDLLVLLRSVGRVAPEVTQVFIR----NSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMR-TGAGHLSELVPM 224 (722)
Q Consensus 150 ~Rk~l~~ll~~i~~l~~~l~l~~i~----~~l~~~l~~~~~~~W~~~EaaL~~l~~~gE~i~~~~~~-~~~~~l~~l~~~ 224 (722)
.|......+.+++...++....++. +.+...+.. .+.+..+.++.+|+.+++..+..... ...+.++.++..
T Consensus 23 ~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~~ 99 (120)
T cd00020 23 VQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS---EDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNL 99 (120)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC---CCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHHHH
Confidence 4555555555555544444433333 222223332 57889999999999999876432110 112345545444
Q ss_pred HHhCCCCCCChhHHHHHHHHHHHhh
Q 004950 225 LLQTKLPCHSNRLVALVYLETVTRY 249 (722)
Q Consensus 225 l~~~~i~~~~hp~V~~~~~e~i~RY 249 (722)
+- .+|..++..+++++...
T Consensus 100 l~------~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 100 LD------SSNEDIQKNATGALSNL 118 (120)
T ss_pred Hh------cCCHHHHHHHHHHHHHh
Confidence 32 24678888888887654
No 117
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=29.70 E-value=6.2e+02 Score=27.11 Aligned_cols=73 Identities=18% Similarity=0.242 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHcccCcccccCCccCCCCChhHHHHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHhcCCCCCC
Q 004950 109 RLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRN 188 (722)
Q Consensus 109 ~~~l~~Ll~~li~km~yp~~~~~~~d~~~~~~~ede~~F~e~Rk~l~~ll~~i~~l~~~l~l~~i~~~l~~~l~~~~~~~ 188 (722)
-.-+.++|+.+.+-+.||..--. ..+-.-|..+|+++.. .|..+.|+.+ -.+++..-+. ...
T Consensus 138 d~ev~q~i~~~~~~L~~~k~p~N---------in~~~lfe~i~~kl~~---ai~kv~p~~~---~~PLlKkpl~---~a~ 199 (465)
T KOG3973|consen 138 DLEVTQLIDSALRTLNFPKQPGN---------INEWKLFETIRQKLDG---AIKKVSPSQR---SHPLLKKPLD---EAT 199 (465)
T ss_pred CchHHHHHHHHHHHcCCCCCCCC---------chHHHHHHHHHHHHHh---HHhcCCHhhc---CCchhcCcCC---hhh
Confidence 33588999999999999876431 2355678889999544 4666777643 2466664443 368
Q ss_pred hhhHHHHHHHH
Q 004950 189 VEEVEAALTLL 199 (722)
Q Consensus 189 W~~~EaaL~~l 199 (722)
|+.||+---++
T Consensus 200 w~~iE~~~~~~ 210 (465)
T KOG3973|consen 200 WPEIEKQCESF 210 (465)
T ss_pred HHHHHHHHHHH
Confidence 99999754443
No 118
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=29.53 E-value=1.2e+03 Score=29.14 Aligned_cols=61 Identities=8% Similarity=0.111 Sum_probs=41.0
Q ss_pred HHHHHHHHHhhhccCCc--------cchhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHcccCcccc
Q 004950 65 LNEVLPSVFYVMQNCEV--------DTTFSIVQFLSGYVATMKSLSPLKEEQRLHAGQILEVILTQIRYDPMYR 130 (722)
Q Consensus 65 l~~~~plvL~~~~~~d~--------~~~~~~~~F~~~~l~~lk~~~~l~~~~~~~l~~Ll~~li~km~yp~~~~ 130 (722)
+.+++|+++..+.|++. .+...++-+..++...+.. ...++++.+|...++.+.-||++-.
T Consensus 418 l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~-----~~l~p~l~~L~s~LL~~AlFDrevn 486 (1133)
T KOG1943|consen 418 LEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSP-----SDLKPVLQSLASALLIVALFDREVN 486 (1133)
T ss_pred HHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCCh-----hhhhHHHHHHHHHHHHHHhcCchhh
Confidence 46899999887777522 2233555555555543221 3356788899999999999988754
No 119
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=28.54 E-value=1.6e+03 Score=30.24 Aligned_cols=144 Identities=10% Similarity=0.150 Sum_probs=85.3
Q ss_pred HHHHHHHHHHcChhhHHHHHHHHHHHHhcCCCCCChhhHHH----HHHHHHHhcccCchhhhhcccccHHhH----HHHH
Q 004950 154 LLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEA----ALTLLYALGESMSEEAMRTGAGHLSEL----VPML 225 (722)
Q Consensus 154 l~~ll~~i~~l~~~l~l~~i~~~l~~~l~~~~~~~W~~~Ea----aL~~l~~~gE~i~~~~~~~~~~~l~~l----~~~l 225 (722)
+..++.+...+..+-+..++..+.. .+|++++. .+|+|..+.|....|..+ ..-..+++ -..+
T Consensus 1072 idkIF~~S~~L~~eai~~fv~AL~~--------vS~eEl~~~~~pr~FsLqKLveIa~~Nm~R-irl~W~~iW~~l~~hf 1142 (1780)
T PLN03076 1072 MNRIFTRSQKLNSEAIIDFVKALCK--------VSMEELRSPSDPRVFSLTKIVEIAHYNMNR-IRLVWSSIWHVLSDFF 1142 (1780)
T ss_pred HHHHHHhcccCCHHHHHHHHHHHHH--------hhHHHHccCCCCchhHHHHHHHHHHhcccc-hheehHhHHHHHHHHH
Confidence 3455556666666666666666655 46888865 599999999986554311 11122222 2223
Q ss_pred HhCCCCCCChhHHHHHHHHHHHhhHH-HHhhc--------CCChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhh
Q 004950 226 LQTKLPCHSNRLVALVYLETVTRYMK-FIQEH--------TQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLK 296 (722)
Q Consensus 226 ~~~~i~~~~hp~V~~~~~e~i~RY~~-~~~~~--------p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r 296 (722)
.. ++++++..|+.-++..+.+.+- |++.. .++|.|.. .++. ++.+..||...---+..++..+.
T Consensus 1143 ~~--vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe-~im~----~s~~~eVrE~ILeCv~qmI~s~~ 1215 (1780)
T PLN03076 1143 VT--IGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFV-IVMR----KSNAVEIRELIIRCVSQMVLSRV 1215 (1780)
T ss_pred HH--hcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHH-HHHH----hcCchHHHHHHHHHHHHHHHHHH
Confidence 32 4555666788888887766554 44432 23454433 3332 23455677776666777888777
Q ss_pred ccchHHHHHHHHHhhhh
Q 004950 297 AKLVPFIENILQSLQDT 313 (722)
Q Consensus 297 ~~L~~~~~~il~~l~~l 313 (722)
..+..=...++..+...
T Consensus 1216 ~nIkSGWktIF~VLs~a 1232 (1780)
T PLN03076 1216 NNVKSGWKSMFMVFTTA 1232 (1780)
T ss_pred hhhhcCcHHHHHHHHHH
Confidence 77766666666666543
No 120
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=26.64 E-value=7.2e+02 Score=26.60 Aligned_cols=53 Identities=11% Similarity=0.063 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHhcCCCeee---cCCCCcCChHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 004950 538 ELQRTLYTFLHVIATHDLSSVF---LSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIR 597 (722)
Q Consensus 538 ~l~r~y~~fl~~i~~~~~~~vl---~s~~~~~~l~~~l~~l~~~~~~~~d~~~~k~a~~~l~~ 597 (722)
+++.+|+.|+.+.+.++...+. ++.. ..+..++.+..+ .++.+...-++++.+
T Consensus 129 siR~~fI~F~Lsfl~~~~~~~~~~lL~~~------~~~~~l~k~l~~-D~~~~v~~iL~~l~~ 184 (330)
T PF11707_consen 129 SIRTNFIRFWLSFLSSGDPELKRDLLSQK------KLMSALFKGLRK-DPPETVILILETLKD 184 (330)
T ss_pred CHHHHHHHHHHHHHccCCHHHHHHHHHcC------chHHHHHhcccC-CCHHHHHHHHHHHHH
Confidence 6999999999999998765442 2111 135556654333 444555555666654
No 121
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=26.59 E-value=1.5e+02 Score=26.09 Aligned_cols=48 Identities=21% Similarity=0.126 Sum_probs=39.6
Q ss_pred hcCCChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhhccchHHHH
Q 004950 255 EHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIE 304 (722)
Q Consensus 255 ~~p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L~~~~~ 304 (722)
..++....++.++. ..+.++++++..+|=+++..++|.|......++.
T Consensus 30 ~~~~~~~~~~~~l~--kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~ 77 (115)
T cd00197 30 ETNVGPKEAVDAIK--KRINNKNPHVVLKALTLLEYCVKNCGERFHQEVA 77 (115)
T ss_pred CCCccHHHHHHHHH--HHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 44667778888887 6778889999999999999999999987766543
No 122
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=25.84 E-value=1.1e+03 Score=27.33 Aligned_cols=45 Identities=16% Similarity=0.112 Sum_probs=26.6
Q ss_pred cCCChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhhccchHHH
Q 004950 256 HTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFI 303 (722)
Q Consensus 256 ~p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L~~~~ 303 (722)
||.-++....++. |=......+|..|.++|.|+.+.|...+.+.+
T Consensus 475 ~~~~i~~l~~~l~---~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l 519 (574)
T smart00638 475 HPSSIKVLEPYLE---GAEPLSTFIRLAAILALRNLAKRDPRKVQEVL 519 (574)
T ss_pred ChhHHHHHHHhcC---CCCCCCHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence 4444433333333 33445667888888888888776665554443
No 123
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.81 E-value=1e+03 Score=27.04 Aligned_cols=96 Identities=16% Similarity=0.110 Sum_probs=67.9
Q ss_pred ccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHH-hhcCCChHHHHHHhccccCCCC-CCchhHHHHHHHHHHHHH
Q 004950 216 GHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFI-QEHTQYIPVVLAAFLDERGIHH-PNVHVSRRASYLFMRVVK 293 (722)
Q Consensus 216 ~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~-~~~p~~L~~vL~~~l~~~Gl~~-~~~~V~~ra~ylf~r~~k 293 (722)
+.+.+.+..+.+. ..+|.-++|..++-.+++-+++- .+--.|-+.+|.++. +|+.+ .+..|..-+-..+.+...
T Consensus 254 ~lL~s~~~~la~k--a~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii--~gL~D~~~~~V~leam~~Lt~v~~ 329 (533)
T KOG2032|consen 254 GLLGSVLLSLANK--ATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAII--RGLYDDLNEEVQLEAMKCLTMVLE 329 (533)
T ss_pred ccHHHHHHHHHHh--ccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHH--HHHhcCCccHHHHHHHHHHHHHHH
Confidence 5677777777664 34456689999999999988882 222356788899998 88876 556777777555666554
Q ss_pred H-hhccchHHHHHHHHHhhhhhh
Q 004950 294 L-LKAKLVPFIENILQSLQDTIA 315 (722)
Q Consensus 294 ~-~r~~L~~~~~~il~~l~~ll~ 315 (722)
. -...+.+|+-++--.+.++..
T Consensus 330 ~~~~~~l~~~~l~ialrlR~l~~ 352 (533)
T KOG2032|consen 330 KASNDDLESYLLNIALRLRTLFD 352 (533)
T ss_pred hhhhcchhhhchhHHHHHHHHHH
Confidence 3 446677787777777777663
No 124
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=25.36 E-value=2e+02 Score=35.65 Aligned_cols=48 Identities=13% Similarity=0.103 Sum_probs=30.4
Q ss_pred CCChhHHHHHHHHHHHhhHHHHhhcCCChHHHHHHhccccCCCCCCchhHHHHHHHHH
Q 004950 232 CHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFM 289 (722)
Q Consensus 232 ~~~hp~V~~~~~e~i~RY~~~~~~~p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~ 289 (722)
.++++.||..+.+.+++. ...| .+.+.+. ..+.++++.||..|..++.
T Consensus 848 ~D~~~~VR~~A~~aL~~~----~~~~----~a~~~L~--~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 848 TDPHLDVRKAAVLALTRW----PGDP----AARDALT--TALTDSDADVRAYARRALA 895 (897)
T ss_pred cCCCHHHHHHHHHHHhcc----CCCH----HHHHHHH--HHHhCCCHHHHHHHHHHHh
Confidence 457788888888888884 1123 3333333 3444677888888876653
No 125
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=25.03 E-value=9.1e+02 Score=29.62 Aligned_cols=190 Identities=14% Similarity=0.117 Sum_probs=0.0
Q ss_pred HhhcCCChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhhccc--hHHHHH-------HHHHhhhhhhhhccCCcc
Q 004950 253 IQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKL--VPFIEN-------ILQSLQDTIARFTSMNYA 323 (722)
Q Consensus 253 ~~~~p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L--~~~~~~-------il~~l~~ll~~~~~~~~~ 323 (722)
...||+-.+-+...+= -+.+++ +-+.++++|.-++++|-..+ ..|++. +...+-+.+..+-
T Consensus 807 ~R~~~~s~~ia~klld---~Ls~~~--~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~----- 876 (1030)
T KOG1967|consen 807 LRNHPESSEIAEKLLD---LLSGPS--TGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKF----- 876 (1030)
T ss_pred HcCCcccchHHHHHHH---hcCCcc--ccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHh-----
Q ss_pred cccCCCCchhhHHHHHHHHHHccCCCChhhhHHHHHHhHHHHHHHHHHHHHhhhccCCchhhhHHHhHHHHHHHHHHhhh
Q 004950 324 SKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSK 403 (722)
Q Consensus 324 ~~~~~~~~d~l~L~Eaig~Lis~~~~~~e~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~lak 403 (722)
..-..+.+-...++..++++. +|.+....-+..+++=+++.+ +..|...-......+.-+-..+.
T Consensus 877 --~t~~~~~K~~yl~~LshVl~~--vP~~vllp~~~~LlPLLLq~L-----------s~~D~~v~vstl~~i~~~l~~~~ 941 (1030)
T KOG1967|consen 877 --ETAPGSQKHNYLEALSHVLTN--VPKQVLLPQFPMLLPLLLQAL-----------SMPDVIVRVSTLRTIPMLLTESE 941 (1030)
T ss_pred --ccCCccchhHHHHHHHHHHhc--CCHHhhccchhhHHHHHHHhc-----------CCCccchhhhHhhhhhHHHHhcc
Q ss_pred ccCCCccCCCcchHHHHHHHHHHHHHHHHhcCCCC-hhHHhHHHHHHHHHHH-hcCcccccchHHHHHHHHhcCChh
Q 004950 404 GFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKV-EPLRCKVTSFIHRMVD-TLGASVFPYLPKALEQLLAESEPK 478 (722)
Q Consensus 404 gf~~~~~~~~~~~~~~~~~~~~~vi~~~l~~~~~~-~~Vre~~~~~~~r~v~-~lg~~v~p~lp~li~~ll~~~~~~ 478 (722)
.+.. +....+.+.++.+-.....+ -.||+.|-+|++-+.+ ..-+.+.||-|..+..+....+-+
T Consensus 942 tL~t-----------~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk 1007 (1030)
T KOG1967|consen 942 TLQT-----------EHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK 1007 (1030)
T ss_pred ccch-----------HHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH
No 126
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=24.66 E-value=1.5e+02 Score=34.91 Aligned_cols=59 Identities=14% Similarity=0.224 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhhHHHHhhcC---CChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhhccc
Q 004950 238 VALVYLETVTRYMKFIQEHT---QYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKL 299 (722)
Q Consensus 238 V~~~~~e~i~RY~~~~~~~p---~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L 299 (722)
+.--.++.+.|+...+..-+ +++.+.+..++ ||...++.+||-|+|.++.++.- |-..+
T Consensus 58 i~dRIl~fla~fv~sl~q~d~e~DlV~~~f~hlL--Rg~Eskdk~VRfrvlqila~l~d-~~~ei 119 (892)
T KOG2025|consen 58 IPDRILSFLARFVESLPQLDKEEDLVAGTFYHLL--RGTESKDKKVRFRVLQILALLSD-ENAEI 119 (892)
T ss_pred cHHHHHHHHHHHHHhhhccCchhhHHHHHHHHHH--hcccCcchhHHHHHHHHHHHHhc-ccccc
Confidence 33344577778888777543 67888898999 99999999999999999988876 44444
No 127
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=24.62 E-value=1.4e+03 Score=28.12 Aligned_cols=38 Identities=24% Similarity=0.253 Sum_probs=25.5
Q ss_pred CCchhhHHHHHHHHHHccCCCChhhhHHHHHHhHHHHHHHH
Q 004950 329 GSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQV 369 (722)
Q Consensus 329 ~~~d~l~L~Eaig~Lis~~~~~~e~~~~~l~~ll~pl~~~l 369 (722)
+.+++.|+.++|+.++.. +++....+...+++-+.+-+
T Consensus 547 ~~~e~~~ll~~i~rii~~---~~~~i~pl~~~il~~L~~lv 584 (947)
T COG5657 547 SLEEREFLLQLISRIIII---DPELIAPLGSEILQLLDNLV 584 (947)
T ss_pred hhHHHHHHHHHHHHHHHh---CHHhhhhhHHHHHHHHHHHH
Confidence 456789999999999997 55666664444444433333
No 128
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=23.57 E-value=9.6e+02 Score=28.39 Aligned_cols=151 Identities=18% Similarity=0.270 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhcccCchhhhhcccccHHhHH
Q 004950 143 EEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELV 222 (722)
Q Consensus 143 de~~F~e~Rk~l~~ll~~i~~l~~~l~l~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~ 222 (722)
+++++.+|=+.|.+-++ .+..+.+...+...+...+.-+. .=.++ |-.+..+|.-.+.++ .-..++
T Consensus 267 s~~eK~~Ff~~L~~~l~---~~pe~i~~~kvlp~Ll~~~~~g~--a~~~~---ltpl~k~~k~ld~~e------yq~~i~ 332 (690)
T KOG1243|consen 267 SVEEKQKFFSGLIDRLD---NFPEEIIASKVLPILLAALEFGD--AASDF---LTPLFKLGKDLDEEE------YQVRII 332 (690)
T ss_pred cHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHhhccc--cchhh---hhHHHHhhhhccccc------cccchh
Confidence 34444444444444222 22334444455555555543211 11222 333344455554432 222355
Q ss_pred HHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhhcCCChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhhcc-chH
Q 004950 223 PMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAK-LVP 301 (722)
Q Consensus 223 ~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~~p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~-L~~ 301 (722)
+.|++. ...+-..||...+.=+-.|.+.+.. +++-..+++-+. .|+.+.|+.+|...-..+.-++.-+... |..
T Consensus 333 p~l~kL--F~~~Dr~iR~~LL~~i~~~i~~Lt~-~~~~d~I~phv~--~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~ 407 (690)
T KOG1243|consen 333 PVLLKL--FKSPDRQIRLLLLQYIEKYIDHLTK-QILNDQIFPHVA--LGFLDTNATLREQTLKSMAVLAPKLSKRNLNG 407 (690)
T ss_pred hhHHHH--hcCcchHHHHHHHHhHHHHhhhcCH-HhhcchhHHHHH--hhcccCCHHHHHHHHHHHHHHHhhhchhhhcH
Confidence 555542 2223345888888877777777764 335556666777 7888999999988866666666544433 555
Q ss_pred HHHHHHHHhhh
Q 004950 302 FIENILQSLQD 312 (722)
Q Consensus 302 ~~~~il~~l~~ 312 (722)
.+-..+..+|+
T Consensus 408 Ellr~~ar~q~ 418 (690)
T KOG1243|consen 408 ELLRYLARLQP 418 (690)
T ss_pred HHHHHHHhhCc
Confidence 55555555555
No 129
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=23.18 E-value=2.5e+02 Score=25.60 Aligned_cols=46 Identities=20% Similarity=-0.029 Sum_probs=36.5
Q ss_pred hcCCChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhhccchHH
Q 004950 255 EHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPF 302 (722)
Q Consensus 255 ~~p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L~~~ 302 (722)
..+.--..++.++- ..+.++|+.|+.+|-.++--+++.|.......
T Consensus 30 ~~~~~~k~a~raL~--krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~ 75 (133)
T cd03561 30 LKPNGPKEAARAIR--KKIKYGNPHVQLLALTLLELLVKNCGKPFHLQ 75 (133)
T ss_pred CCCCCHHHHHHHHH--HHHcCCCHHHHHHHHHHHHHHHHhCChHHHHH
Confidence 33555556777776 67778899999999999999999999877543
No 130
>cd05133 RasGAP_IQGAP1 IQGAP1 is a homodimeric protein that is widely expressed among vertebrate cell types from early embryogenesis. Mammalian IQGAP1 protein is the best characterized member of the IQGAP family, and contains several protein-interacting domains. Human IQGAP1 is most similar to mouse Iqgap1 (94% identity) and has 62% identity to human IQGAP2. IQGAP1 binds and cross-links actin filaments in vitro and has been implicated in Ca2+/calmodulin signaling, E-cadherin-dependent cell adhesion, cell motility, and invasion. Yeast IQGAP homologues have a role in the recruitment of actin filaments, are components of the spindle pole body, and are required for actomyosin ring assembly and cytokinesis. Furthermore, IQGAP1 over-expression has also been detected in gastric and colorectal carcinomas and gastric cancer cell lines.
Probab=23.17 E-value=1e+03 Score=26.03 Aligned_cols=112 Identities=10% Similarity=0.070 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCCCeeecCCCCcCChHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhCCCCCC
Q 004950 530 TEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDWCARPFVE 609 (722)
Q Consensus 530 ~d~~r~~~~l~r~y~~fl~~i~~~~~~~vl~s~~~~~~l~~~l~~l~~~~~~~~d~~~~k~a~~~l~~li~~~~~~~~~~ 609 (722)
+|.+....++++-+-.-+..+.. ..+.++.++.... ..=|...|..+..+.+.+..--.+....
T Consensus 106 ~e~A~~~peV~~~~~~~l~~Lr~--------------i~~~fl~~I~~S~--~~~P~~iR~ick~i~~~~~~kFP~~~~~ 169 (360)
T cd05133 106 PEQALSHEEVRTRLDASIRNMRT--------------VTDKFLSAIVSSV--DKIPYGMRFIAKVLKDSLHEKFPDAGED 169 (360)
T ss_pred HHHhccCHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHhH--HhCCHHHHHHHHHHHHHHHHHCCCCchh
Confidence 45555666677666555554432 1234555555321 1334444444444444442221111111
Q ss_pred CCchhHHHHHHHhhhhhhhhhcccCCCCCCCc--------hhHHHHHHHHHHHHHHHHH
Q 004950 610 EKVPGFQSFMIEAFAMNCCLYSVLDKSFEFGD--------ANTLVLFGEIVLAQKVMYE 660 (722)
Q Consensus 610 ~~~~gf~~fl~~~~~~~~~~~~~~~~~F~~~D--------a~~~~~l~eia~~l~~l~~ 660 (722)
+-....+.|++-+++-+ ++..|- .|++-| ...|.-|..+|.+|..+..
T Consensus 170 ~i~~~vG~fiflRfi~P-AIvsPe--~~~ii~~~~~~~~~~~~rrnL~~iaKvLQ~lan 225 (360)
T cd05133 170 ELLKIVGNLLYYRYMNP-AIVAPD--AFDIIDLSAGGQLTTDQRRNLGSIAKMLQHAAS 225 (360)
T ss_pred hHHHHHHHHHHHHhccc-cccCch--hcCccccccCCCCCHHHHhhHHHHHHHHHHHHc
Confidence 12456688888887655 244333 455543 2367788899999988864
No 131
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=22.83 E-value=9.4e+02 Score=25.62 Aligned_cols=77 Identities=25% Similarity=0.327 Sum_probs=53.7
Q ss_pred CCChhHHHHHHHHHHHhhHHHHhhcCCChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhh--------ccchHHH
Q 004950 232 CHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLK--------AKLVPFI 303 (722)
Q Consensus 232 ~~~hp~V~~~~~e~i~RY~~~~~~~p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r--------~~L~~~~ 303 (722)
.-.|.......+..++.+..++ ..+.-+.+.++|. .|+.+..+.+| |+| +.++...++ ..+.+++
T Consensus 33 KE~nE~aL~~~l~al~~~~~~~--~~~~~~~~~~~~~--kGl~~kk~~vR-~~w--~~~~~~~~~~~~~~~~~~~~~~~~ 105 (339)
T PF12074_consen 33 KESNEAALSALLSALFKHLFFL--SSELPKKVVDAFK--KGLKDKKPPVR-RAW--LLCLGEALWESPNSDSLKFAEPFL 105 (339)
T ss_pred hhcCHHHHHHHHHHHHHHHHHh--CcCCCHHHHHHHH--HHhcCCCCcHH-HHH--HHHHHHHHhhccCchHHHHHHHHH
Confidence 4478889999999999999999 5555678889998 79988776664 555 444444443 3344566
Q ss_pred HHHHHHhhhhhh
Q 004950 304 ENILQSLQDTIA 315 (722)
Q Consensus 304 ~~il~~l~~ll~ 315 (722)
+.+++.+.....
T Consensus 106 ~~L~~~~~~~~~ 117 (339)
T PF12074_consen 106 PKLLQSLKEASA 117 (339)
T ss_pred HHHHHHHHHHHh
Confidence 666666665544
No 132
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=22.77 E-value=8.5e+02 Score=25.07 Aligned_cols=214 Identities=14% Similarity=0.177 Sum_probs=104.0
Q ss_pred hhhHHHHHHHHHHhcccCchh--hhhcccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhh---cCCChHHH
Q 004950 189 VEEVEAALTLLYALGESMSEE--AMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQE---HTQYIPVV 263 (722)
Q Consensus 189 W~~~EaaL~~l~~~gE~i~~~--~~~~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~---~p~~L~~v 263 (722)
---.|.+++.|+..+.. +.+ -+. ..+.++ ++.. +.+.|+|.||-.+++.+...+.=-+. -..|++.+
T Consensus 27 p~i~e~al~al~n~aaf-~~nq~~Ir-~~Ggi~-lI~~-----lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~V 98 (254)
T PF04826_consen 27 PFIQEKALIALGNSAAF-PFNQDIIR-DLGGIS-LIGS-----LLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQV 98 (254)
T ss_pred hHHHHHHHHHHHhhccC-hhHHHHHH-HcCCHH-HHHH-----HcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Confidence 34457788888765442 111 010 012222 2222 23447889999899888755443332 23688888
Q ss_pred HHHhccccCCCCCCchhHHHHHHHHHHHH--HHhhccchHHHHHHHHHhhhhhhhhccCCcccccCCCCchhhHHHHHHH
Q 004950 264 LAAFLDERGIHHPNVHVSRRASYLFMRVV--KLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIG 341 (722)
Q Consensus 264 L~~~l~~~Gl~~~~~~V~~ra~ylf~r~~--k~~r~~L~~~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~L~Eaig 341 (722)
++..++ + .-+..++..+--++..+. .+.+..+.+|++.++.- |..+. ..-+ +.++.
T Consensus 99 c~~~~s--~--~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~L----L~~G~-----------~~~k---~~vLk 156 (254)
T PF04826_consen 99 CEETVS--S--PLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSL----LSSGS-----------EKTK---VQVLK 156 (254)
T ss_pred HHHHhc--C--CCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHH----HHcCC-----------hHHH---HHHHH
Confidence 888774 2 235557766645555553 12223445677766543 32111 1112 34555
Q ss_pred HHHccCCCChhhhHHHHHHhHHHHHHHHHHHHHhhhccCCchhhhHHHhHHHHHHHHHHhhhccCCCcc-CC----Ccch
Q 004950 342 LLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLV-TS----SRPA 416 (722)
Q Consensus 342 ~Lis~~~~~~e~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~lakgf~~~~~-~~----~~~~ 416 (722)
.|+..+. .++...+++.. -....+..+.+... +. ..+..++.++.++.+++..... .. +..+
T Consensus 157 ~L~nLS~-np~~~~~Ll~~---q~~~~~~~Lf~~~~---~~------~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~ 223 (254)
T PF04826_consen 157 VLVNLSE-NPDMTRELLSA---QVLSSFLSLFNSSE---SK------ENLLRVLTFFENINENIKKEAYVFVQDDFSEDS 223 (254)
T ss_pred HHHHhcc-CHHHHHHHHhc---cchhHHHHHHccCC---cc------HHHHHHHHHHHHHHHhhCcccceeccccCCchh
Confidence 5555432 33333333331 11222223332211 11 1257888999999999985421 11 1122
Q ss_pred HHHHHHHHHHHHHHHHhc-CCCChhHHhHH
Q 004950 417 IGLMFKQTLDVLLQILVV-FPKVEPLRCKV 445 (722)
Q Consensus 417 ~~~~~~~~~~vi~~~l~~-~~~~~~Vre~~ 445 (722)
...+|.+.-....++... -+.+++|++.+
T Consensus 224 L~~~~~e~~~~~~~l~~l~~h~d~ev~~~v 253 (254)
T PF04826_consen 224 LFSLFGESSQLAKKLQALANHPDPEVKEQV 253 (254)
T ss_pred HHHHHccHHHHHHHHHHHHcCCCHHHhhhc
Confidence 334444433333222222 14678888865
No 133
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=22.46 E-value=9.9e+02 Score=25.71 Aligned_cols=76 Identities=17% Similarity=0.261 Sum_probs=50.9
Q ss_pred CCChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhhhhhhccCCcccccCCCCchhhHH
Q 004950 257 TQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHI 336 (722)
Q Consensus 257 p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L~~~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~L 336 (722)
|...-.+|..++ .|+.++++ +|...-+.+-.+|.+|+ +..|+..=+..+++-+.-- ..+.+||..+
T Consensus 102 ~~l~L~vLsnLf--n~~d~~~~-aR~~Vy~~lv~la~~~~--~~~~i~~~lk~~~~~lkew---------~~~vedqrel 167 (378)
T KOG2753|consen 102 ASLRLQVLSNLF--NGVDKPTP-ARYQVYMSLVTLAASCK--LIEYIVPNLKQLDDWLKEW---------NISVEDQREL 167 (378)
T ss_pred cccHHHHHHHHH--hccCCCch-HHHHHHHHHHHHHhhcc--eeeeecccHHHHHHHHHhC---------CCCHHHHHHH
Confidence 334557888888 89988887 89888767777777666 3344444455555554311 1256788888
Q ss_pred HHHHHHHHcc
Q 004950 337 FEAIGLLIGM 346 (722)
Q Consensus 337 ~Eaig~Lis~ 346 (722)
|-++.-.+-.
T Consensus 168 ~r~v~~al~~ 177 (378)
T KOG2753|consen 168 LRAVHKALKD 177 (378)
T ss_pred HHHHHHHHHh
Confidence 8888877764
No 134
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=22.07 E-value=1.2e+03 Score=26.42 Aligned_cols=110 Identities=16% Similarity=0.236 Sum_probs=71.9
Q ss_pred HHHHHHHHHHcChhhHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhCCCCCC
Q 004950 154 LLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCH 233 (722)
Q Consensus 154 l~~ll~~i~~l~~~l~l~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~~i~~~ 233 (722)
--|.+..++...|..+...+.++|.+ .+-+..=++|-++-.+-|.++.|+ ++.
T Consensus 392 eed~~~~las~~P~~~I~~i~~~Ilt-------~D~~~~~~~iKm~Tkl~e~l~~Ee----------L~~---------- 444 (516)
T KOG2956|consen 392 EEDCLTTLASHLPLQCIVNISPLILT-------ADEPRAVAVIKMLTKLFERLSAEE----------LLN---------- 444 (516)
T ss_pred HHHHHHHHHhhCchhHHHHHhhHHhc-------CcchHHHHHHHHHHHHHhhcCHHH----------HHH----------
Confidence 33555667777888887777777774 233334455556666666665442 111
Q ss_pred ChhHHHHHHHHHHHhhHHHHhhcCCChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhh-ccchHHHHHHHHHhhh
Q 004950 234 SNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLK-AKLVPFIENILQSLQD 312 (722)
Q Consensus 234 ~hp~V~~~~~e~i~RY~~~~~~~p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r-~~L~~~~~~il~~l~~ 312 (722)
.++.+++.++ .|..+.+..||-.|-|-+-.+++... +.+.||++++=..-..
T Consensus 445 -------------------------ll~diaP~~i--qay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk~~ 497 (516)
T KOG2956|consen 445 -------------------------LLPDIAPCVI--QAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSKLN 497 (516)
T ss_pred -------------------------hhhhhhhHHH--HHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHHHH
Confidence 1233344445 45557778899999999999999888 8899999987776666
Q ss_pred hhhhh
Q 004950 313 TIARF 317 (722)
Q Consensus 313 ll~~~ 317 (722)
++++.
T Consensus 498 LlqlY 502 (516)
T KOG2956|consen 498 LLQLY 502 (516)
T ss_pred HHHHH
Confidence 66543
No 135
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=21.32 E-value=84 Score=21.95 Aligned_cols=20 Identities=15% Similarity=0.333 Sum_probs=17.0
Q ss_pred CCCCchhHHHHHHHHHHHHH
Q 004950 274 HHPNVHVSRRASYLFMRVVK 293 (722)
Q Consensus 274 ~~~~~~V~~ra~ylf~r~~k 293 (722)
.+++..|+..|+.++..+++
T Consensus 22 ~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 22 KSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp TSSSHHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHhC
Confidence 37889999999999998863
No 136
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=20.90 E-value=6.8e+02 Score=23.20 Aligned_cols=80 Identities=14% Similarity=0.180 Sum_probs=48.6
Q ss_pred hhhHHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhhcCCC--hHHHHHH
Q 004950 189 VEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQY--IPVVLAA 266 (722)
Q Consensus 189 W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~~p~~--L~~vL~~ 266 (722)
+.-+++-=.|+..-|..+..+- . ...++.+|+.++ + ..+|+.|+--.+++|..++..|...|++ +..+-+.
T Consensus 59 l~AL~LLe~~vkNCG~~fh~ev-a-s~~fl~~l~~l~-~----~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~y~~ 131 (142)
T cd03569 59 LYALLLLESCVKNCGTHFHDEV-A-SREFMDELKDLI-K----TTKNEEVRQKILELIQAWALAFRNKPQLKYVVDTYQI 131 (142)
T ss_pred HHHHHHHHHHHHHCCHHHHHHH-h-hHHHHHHHHHHH-c----ccCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHH
Confidence 4444444444444444433221 1 234566655543 2 2578999999999999999999988864 5555555
Q ss_pred hccccCCCCC
Q 004950 267 FLDERGIHHP 276 (722)
Q Consensus 267 ~l~~~Gl~~~ 276 (722)
+.. .|+.-|
T Consensus 132 L~~-~G~~FP 140 (142)
T cd03569 132 LKA-EGHKFP 140 (142)
T ss_pred HHH-cCCCCC
Confidence 543 676543
No 137
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=20.64 E-value=1.3e+03 Score=26.36 Aligned_cols=132 Identities=17% Similarity=0.153 Sum_probs=71.9
Q ss_pred ccHHhHHHHHH--h----CCCCCCChhHHHHHHHHHHHhhHHHHhhcCCChHHHHHHhccccCCCCC--CchhHHHHHHH
Q 004950 216 GHLSELVPMLL--Q----TKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHP--NVHVSRRASYL 287 (722)
Q Consensus 216 ~~l~~l~~~l~--~----~~i~~~~hp~V~~~~~e~i~RY~~~~~~~p~~L~~vL~~~l~~~Gl~~~--~~~V~~ra~yl 287 (722)
..+..++...+ . .+.+. ..|.+|.-.+-.++|=..=. ...|.++..+. .|+..+ +.++|+-+-..
T Consensus 272 ~~V~~L~~Ly~G~~~~~~~~~~p-a~~~lq~kIL~~L~kS~~Aa----~~~~~~~~i~~--~~l~~~~~~~klk~~~l~F 344 (501)
T PF13001_consen 272 DLVDRLFDLYLGKGIPPENGRPP-ASPRLQEKILSLLSKSVIAA----TSFPNILQIVF--DGLYSDNTNSKLKSLALQF 344 (501)
T ss_pred HHHHHHHHHHHhcCCchhcCCCC-CCHHHHHHHHHHHHHhHHHH----hCCccHHHHHh--ccccCCccccccchhcchh
Confidence 45556666655 2 12332 35678777777777732222 23456777777 688877 66666665444
Q ss_pred H---HHHHHHhhccchH-HHHHHHHHhhhhhhhhccCCcccccCCCCchhhHHHHHHHHHHccCCCChhhhHHH
Q 004950 288 F---MRVVKLLKAKLVP-FIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDY 357 (722)
Q Consensus 288 f---~r~~k~~r~~L~~-~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~L~Eaig~Lis~~~~~~e~~~~~ 357 (722)
+ ...++.+...+.. .-+.|+....+.+....+ ........+-+..-||++|.|.......-.+...+
T Consensus 345 ~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~---~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~~l 415 (501)
T PF13001_consen 345 IRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSS---QSNSSEDIELRSLAYETLGLLAKRAPSLFSKDLSL 415 (501)
T ss_pred hhcchHHhhhcCHHHHHHHHHHHHhcCccccccccc---cCCCcccHHHHHHHHHHHHHHHccCcccccccHHH
Confidence 4 4445555544433 455555666665521110 00011123447799999999999754333344444
No 138
>PF09424 YqeY: Yqey-like protein; InterPro: IPR019004 Putative protein of unknown function; the authentic protein is detected in highly purified mitochondria in high-throughput studies; YOR215C is not an essential gene. ; PDB: 1NG6_A.
Probab=20.16 E-value=3e+02 Score=25.69 Aligned_cols=47 Identities=15% Similarity=0.291 Sum_probs=31.2
Q ss_pred hccCCCCCCCHHHHHHHHHHhcc----CCchHHHHHHHHHHHHHhhccCCCc
Q 004950 672 TKGFPSAHCPPDLAEQYCQKLQG----NDIKALKSFYQSLIEKLRVQQNGSL 719 (722)
Q Consensus 672 ~~~lP~~~~~~~~~~~f~~~l~~----~~~k~~k~~~~~f~~~~r~~~~~~~ 719 (722)
..|||. ++++++....+..++. .+.|.+-+..+.+..++.|+-.|+.
T Consensus 84 ~~yLP~-~lseeEi~~~v~~~i~e~ga~~~k~mG~vMk~l~~~~~G~~Dgk~ 134 (143)
T PF09424_consen 84 EEYLPK-QLSEEEIEAIVEEAIAELGASSMKDMGKVMKALMAKLKGRADGKK 134 (143)
T ss_dssp GGGS------HHHHHHHHHHHHHHTT--BGGGHHHHHHHHHHHHTTTS-HHH
T ss_pred HHhCcC-CCCHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCcccHHH
Confidence 579996 8999999999988854 2357787888888888888655544
Done!