Query 004950
Match_columns 722
No_of_seqs 162 out of 386
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 10:46:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004950.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004950hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ibv_A Exportin-T; karyopherin 100.0 8E-116 3E-120 1059.7 62.2 690 1-715 263-979 (980)
2 2x1g_F Cadmus; transport prote 100.0 5.2E-57 1.8E-61 552.1 55.5 629 28-715 310-967 (971)
3 2x19_B Importin-13; nuclear tr 100.0 4.2E-53 1.4E-57 517.1 55.6 622 25-714 299-954 (963)
4 4hat_C Exportin-1; heat repeat 100.0 1.3E-45 4.5E-50 446.6 50.1 622 24-713 307-1006(1023)
5 3m1i_C Exportin-1; heat repeat 100.0 4.9E-45 1.7E-49 449.0 49.3 626 24-714 307-1007(1049)
6 3gjx_A Exportin-1; transport, 100.0 2.6E-41 8.8E-46 407.0 46.6 619 24-713 314-1026(1073)
7 3a6p_A Exportin-5; exportin-5, 100.0 1.9E-38 6.5E-43 393.0 44.2 671 1-713 279-1159(1204)
8 4fdd_A Transportin-1; heat rep 99.9 9.8E-24 3.4E-28 254.2 48.6 475 64-601 253-785 (852)
9 2bpt_A Importin beta-1 subunit 99.9 4.1E-21 1.4E-25 230.8 49.7 485 64-604 262-815 (861)
10 1qgr_A Protein (importin beta 99.9 2.1E-20 7.2E-25 225.0 50.4 494 64-603 255-830 (876)
11 1wa5_C Importin alpha RE-expor 99.9 7.6E-22 2.6E-26 240.6 32.6 471 63-601 283-792 (960)
12 4fdd_A Transportin-1; heat rep 99.6 1.9E-11 6.5E-16 147.0 46.3 345 187-603 333-702 (852)
13 1u6g_C TIP120 protein, CAND1; 99.4 9.4E-12 3.2E-16 155.5 27.0 446 65-603 253-724 (1230)
14 1qgr_A Protein (importin beta 99.3 9.3E-10 3.2E-14 132.1 35.8 352 187-604 340-726 (876)
15 2bpt_A Importin beta-1 subunit 99.3 1.4E-08 4.8E-13 121.5 40.2 349 187-603 343-714 (861)
16 1ibr_B P95, importin beta-1 su 99.2 3.7E-10 1.3E-14 124.9 20.6 184 67-273 259-460 (462)
17 1b3u_A Protein (protein phosph 99.0 3.8E-07 1.3E-11 103.8 33.0 416 65-598 162-585 (588)
18 1u6g_C TIP120 protein, CAND1; 98.9 3.6E-07 1.2E-11 114.1 29.2 383 64-512 130-575 (1230)
19 1b3u_A Protein (protein phosph 98.8 1.1E-05 3.8E-10 91.7 34.3 364 150-601 180-549 (588)
20 1w9c_A CRM1 protein, exportin 98.4 2.8E-05 9.4E-10 80.5 20.9 222 463-713 70-318 (321)
21 1ibr_B P95, importin beta-1 su 98.3 3E-05 1E-09 85.1 21.7 291 188-517 143-460 (462)
22 1wa5_C Importin alpha RE-expor 98.3 0.00012 4.2E-09 88.8 27.3 286 188-503 471-803 (960)
23 2qk1_A Protein STU2; STU2P, XM 98.2 9.4E-06 3.2E-10 82.4 11.9 200 187-467 28-234 (249)
24 2qk2_A LP04448P; mini spindles 97.7 0.00054 1.8E-08 68.7 14.8 190 234-467 27-219 (242)
25 4b8j_A Importin subunit alpha- 97.5 0.022 7.6E-07 63.6 27.2 343 188-599 131-495 (528)
26 2qk2_A LP04448P; mini spindles 97.5 0.00028 9.7E-09 70.8 9.4 157 187-369 27-185 (242)
27 2x1g_F Cadmus; transport prote 97.5 0.025 8.6E-07 68.4 28.4 379 64-500 502-914 (971)
28 2vgl_B AP-2 complex subunit be 97.5 0.083 2.8E-06 60.1 31.2 363 150-597 137-529 (591)
29 2jdq_A Importin alpha-1 subuni 97.5 0.0098 3.4E-07 64.7 22.3 312 69-456 22-349 (450)
30 4b8j_A Importin subunit alpha- 97.4 0.0095 3.3E-07 66.7 22.4 339 187-602 86-445 (528)
31 1w63_A Adapter-related protein 97.4 0.011 3.9E-07 67.8 22.3 161 164-345 100-263 (618)
32 1wa5_B Importin alpha subunit; 97.3 0.032 1.1E-06 62.5 24.1 343 188-600 144-510 (530)
33 2jdq_A Importin alpha-1 subuni 97.2 0.07 2.4E-06 57.8 25.1 314 67-457 64-393 (450)
34 2x19_B Importin-13; nuclear tr 97.2 0.11 3.7E-06 62.6 29.1 350 83-496 505-898 (963)
35 3ibv_A Exportin-T; karyopherin 97.1 0.056 1.9E-06 65.3 25.7 237 243-502 673-934 (980)
36 2vgl_B AP-2 complex subunit be 97.1 0.13 4.5E-06 58.5 27.4 124 151-295 66-191 (591)
37 1wa5_B Importin alpha subunit; 97.0 0.016 5.6E-07 64.8 18.3 336 187-602 99-459 (530)
38 2qk1_A Protein STU2; STU2P, XM 96.9 0.017 5.7E-07 58.2 15.2 153 175-348 63-223 (249)
39 2vgl_A Adaptor protein complex 96.6 0.13 4.5E-06 58.9 21.9 163 164-345 104-270 (621)
40 1w63_A Adapter-related protein 96.1 0.46 1.6E-05 54.3 22.6 117 232-374 117-233 (618)
41 3m1i_C Exportin-1; heat repeat 96.0 0.5 1.7E-05 57.5 23.9 98 420-519 537-647 (1049)
42 3tpo_A Importin subunit alpha- 95.9 2.1 7.2E-05 47.5 26.8 293 150-491 136-448 (529)
43 3ul1_B Importin subunit alpha- 95.3 3 0.0001 46.0 25.0 294 150-492 117-430 (510)
44 4hxt_A De novo protein OR329; 94.3 0.91 3.1E-05 44.3 15.5 221 187-462 14-249 (252)
45 3a6p_A Exportin-5; exportin-5, 93.5 4.5 0.00016 49.9 22.7 114 392-514 550-681 (1204)
46 4hxt_A De novo protein OR329; 93.4 1.2 4E-05 43.5 14.2 190 67-298 44-246 (252)
47 4db8_A Armadillo-repeat protei 93.3 2.6 8.8E-05 41.2 16.8 189 67-293 54-251 (252)
48 3ul1_B Importin subunit alpha- 93.2 12 0.0004 41.2 24.7 320 67-455 143-479 (510)
49 3tpo_A Importin subunit alpha- 93.1 13 0.00043 41.1 29.6 315 216-602 119-451 (529)
50 4db8_A Armadillo-repeat protei 92.5 0.66 2.3E-05 45.6 11.0 129 150-293 70-209 (252)
51 2vgl_A Adaptor protein complex 91.9 20 0.00069 40.5 24.4 115 233-374 122-238 (621)
52 3ltm_A Alpha-REP4; protein eng 91.2 8.8 0.0003 36.2 17.2 79 187-292 31-109 (211)
53 1xm9_A Plakophilin 1; armadill 91.1 19 0.00065 38.9 26.0 373 187-599 14-448 (457)
54 2z6h_A Catenin beta-1, beta-ca 90.9 25 0.00085 39.7 25.6 252 187-492 26-292 (644)
55 3now_A UNC-45 protein, SD10334 90.8 29 0.001 40.5 37.1 333 187-600 302-694 (810)
56 1xqr_A HSPBP1 protein; armadil 90.5 17 0.00057 37.0 19.4 176 191-404 56-239 (296)
57 4ffb_C Protein STU2; tubulin f 90.3 2.3 7.9E-05 42.8 12.5 104 187-293 21-132 (278)
58 4db6_A Armadillo repeat protei 89.5 7 0.00024 36.8 14.7 186 67-293 12-209 (210)
59 4db6_A Armadillo repeat protei 88.9 1.6 5.4E-05 41.5 9.5 105 175-294 15-126 (210)
60 1jdh_A Beta-catenin; beta-cate 88.9 9.9 0.00034 41.5 17.3 249 187-491 72-338 (529)
61 2z6g_A B-catenin; FULL-length, 88.4 43 0.0015 38.9 25.4 252 187-492 162-428 (780)
62 4hat_C Exportin-1; heat repeat 87.3 58 0.002 39.2 46.4 425 187-666 356-839 (1023)
63 1jdh_A Beta-catenin; beta-cate 86.9 38 0.0013 36.6 24.4 335 187-599 29-384 (529)
64 1xqr_A HSPBP1 protein; armadil 86.2 31 0.001 35.0 17.8 133 333-493 99-239 (296)
65 3u0r_A Apoptosis inhibitor 5; 85.3 45 0.0015 36.1 19.0 95 423-519 215-323 (507)
66 2z6h_A Catenin beta-1, beta-ca 85.1 22 0.00076 40.2 17.9 249 187-491 69-335 (644)
67 1oyz_A Hypothetical protein YI 83.8 18 0.00063 35.6 14.8 84 187-291 103-186 (280)
68 2iw3_A Elongation factor 3A; a 83.2 26 0.00089 41.8 17.5 215 189-455 109-325 (986)
69 1te4_A Conserved protein MTH18 83.0 1.9 6.5E-05 37.9 6.1 86 175-290 45-130 (131)
70 1oyz_A Hypothetical protein YI 82.5 4.3 0.00015 40.5 9.3 88 187-295 35-122 (280)
71 3ltj_A Alpharep-4; protein eng 81.6 4 0.00014 38.4 8.2 78 187-291 88-165 (201)
72 2iw3_A Elongation factor 3A; a 81.4 5.7 0.00019 47.4 10.9 154 150-314 111-303 (986)
73 2z6g_A B-catenin; FULL-length, 80.9 24 0.00081 41.1 16.1 248 187-491 205-471 (780)
74 4ffb_C Protein STU2; tubulin f 80.0 7.8 0.00027 38.8 10.2 121 187-314 67-192 (278)
75 3ltm_A Alpha-REP4; protein eng 76.6 4.6 0.00016 38.3 6.9 81 187-294 124-204 (211)
76 3ltj_A Alpharep-4; protein eng 76.2 22 0.00077 33.0 11.7 79 187-292 26-104 (201)
77 1vsy_4 Proteasome activator BL 71.3 72 0.0025 37.1 16.4 53 258-312 335-391 (799)
78 3tjz_B Coatomer subunit gamma; 69.8 9.9 0.00034 39.8 7.9 91 232-347 114-204 (355)
79 2of3_A ZYG-9; multifunctional 60.2 1.2E+02 0.004 30.2 13.3 137 80-253 100-238 (266)
80 2db0_A 253AA long hypothetical 59.2 88 0.003 29.5 11.0 122 150-291 123-244 (253)
81 1te4_A Conserved protein MTH18 50.0 8.5 0.00029 33.5 2.7 78 187-292 24-101 (131)
82 3u0r_A Apoptosis inhibitor 5; 45.5 3.2E+02 0.011 29.5 20.1 234 395-692 49-293 (507)
83 3gjx_A Exportin-1; transport, 45.4 4.7E+02 0.016 31.4 33.7 104 416-519 820-934 (1073)
84 3nmw_A APC variant protein; AR 44.6 2.8E+02 0.0095 28.5 16.2 227 190-453 47-291 (354)
85 3tj1_A RNA polymerase I-specif 43.8 3.2E+02 0.011 30.7 14.7 122 149-293 73-203 (649)
86 1w9c_A CRM1 protein, exportin 43.4 2.8E+02 0.0096 28.2 15.0 152 146-310 41-212 (321)
87 3tjz_B Coatomer subunit gamma; 42.6 74 0.0025 33.1 8.9 152 107-293 43-205 (355)
88 2of3_A ZYG-9; multifunctional 41.0 2.8E+02 0.0094 27.4 12.6 103 187-298 99-201 (266)
89 3bpj_A Eukaryotic translation 36.2 60 0.002 25.9 5.3 57 142-200 11-67 (80)
90 3oc3_A Helicase MOT1, MOT1; re 30.2 39 0.0013 37.5 4.2 91 235-346 276-366 (800)
91 3now_A UNC-45 protein, SD10334 29.1 7.2E+02 0.025 28.7 44.2 235 216-492 290-565 (810)
92 2jak_A Serine/threonine-protei 27.4 5.5E+02 0.019 26.8 13.9 61 60-123 141-205 (392)
93 1xm9_A Plakophilin 1; armadill 26.5 5.9E+02 0.02 26.8 25.3 123 217-369 3-136 (457)
94 2jak_A Serine/threonine-protei 24.2 95 0.0033 32.7 5.9 82 427-509 175-266 (392)
95 2ket_A Cathelicidin-6; antimic 22.3 63 0.0021 19.1 2.2 21 146-166 2-22 (27)
96 4atg_A TAF6; transcription, TF 20.0 5.4E+02 0.018 24.0 11.3 95 258-374 87-181 (196)
No 1
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=100.00 E-value=8e-116 Score=1059.69 Aligned_cols=690 Identities=24% Similarity=0.408 Sum_probs=572.3
Q ss_pred CChhhHHHHHHhcChhhhhccccc-cchhhHHHHHHHHHHHHHHHHHHHhhhcCh---hhHHHHHHHHHHHHHHHHHhhh
Q 004950 1 MDPQSKLNLLQTLQISRVFGLVSE-DGESELVSKVAALLTGYAMEVLDCVKRLNA---ENANEASKKLLNEVLPSVFYVM 76 (722)
Q Consensus 1 M~p~~Kl~li~~L~l~~~l~~~~~-~~D~e~~~~~a~L~~~~g~el~~~~~~~~~---~~~~~~~~~~l~~~~plvL~~~ 76 (722)
|+|.+|+++|+.|++.+++..+.. ++|.|+.+++|||++++|++++.+ ++... .+..+.+..++..++|++|+|+
T Consensus 263 ~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~-~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~ 341 (980)
T 3ibv_A 263 MKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAI-KSDPSELSPELKENCSFQLYNLFPYLIRYL 341 (980)
T ss_dssp CCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHH-HTSCC--CHHHHHHHHHHHHHTHHHHHHHH
T ss_pred CChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH-ccCccccchhhhhhHHHHHHHHHHHHHHHh
Confidence 789999999999999999998764 689999999999999999999999 64221 2445578889999999999999
Q ss_pred ccCCccchhhHHHHHHHHHHHhccC---CCChHHHHHHHHHHHHHHHHHcccCcccccCCccCCCCChhHHHHHHHHHHH
Q 004950 77 QNCEVDTTFSIVQFLSGYVATMKSL---SPLKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKD 153 (722)
Q Consensus 77 ~~~d~~~~~~~~~F~~~~l~~lk~~---~~l~~~~~~~l~~Ll~~li~km~yp~~~~~~~d~~~~~~~ede~~F~e~Rk~ 153 (722)
+|+|++++..||+||+.|++.+|+. .++.+.+++++.+|++++++||+||+++ ||.+++|+||+++|++|||+
T Consensus 342 ~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~----~~~~~~d~ed~~~F~e~Rk~ 417 (980)
T 3ibv_A 342 SDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQ----EWDDDPDSEEEAEFQEMRKK 417 (980)
T ss_dssp TCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTC----CCCCCSSSSTHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCcc----ccccccchhHHHHHHHHHHH
Confidence 9999999999999999999998753 3478999999999999999999999886 34433345788999999999
Q ss_pred HHHHHHHHHHcChhhHHH----HHHHHHHHHhcCCCCCChhhHHHHHHHHHHhcccCchhhhh--cccc---cHHhHHHH
Q 004950 154 LLVLLRSVGRVAPEVTQV----FIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMR--TGAG---HLSELVPM 224 (722)
Q Consensus 154 l~~ll~~i~~l~~~l~l~----~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~~gE~i~~~~~~--~~~~---~l~~l~~~ 224 (722)
+++++++|+.++|+++++ ++.+.+.+.+.++++.+|+++|||||+||++||+++.+... ..+. .+-+++..
T Consensus 418 l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ 497 (980)
T 3ibv_A 418 LKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILAL 497 (980)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHH
Confidence 999999999999999999 77777777665434568999999999999999999865432 1222 34455566
Q ss_pred HHhCCCCCCChhHHHHHHHHHHHhhHHHHhhcCCChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhhccchHHHH
Q 004950 225 LLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIE 304 (722)
Q Consensus 225 l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~~p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L~~~~~ 304 (722)
++++++++++||+||+++||++|||++||..||+|++++|++|++++|++|++++||+||||+|+|||++||++|.||++
T Consensus 498 ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~ 577 (980)
T 3ibv_A 498 VTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTE 577 (980)
T ss_dssp HHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHH
T ss_pred HHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHH
Confidence 67778888999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhccCCcccc--------cCC---CCchhhHHHHHHHHHHccCCCChhhhHHHHHHhHHHHHHHHHHHH
Q 004950 305 NILQSLQDTIARFTSMNYASK--------ELS---GSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTML 373 (722)
Q Consensus 305 ~il~~l~~ll~~~~~~~~~~~--------~~~---~~~d~l~L~Eaig~Lis~~~~~~e~~~~~l~~ll~pl~~~l~~~~ 373 (722)
+|++.++++|.++++ +.... +++ ..++|+|||||||+|++..+.|+|++..+++.+++|+++++++++
T Consensus 578 ~il~~l~~lL~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l 656 (980)
T 3ibv_A 578 SSLAMLGDLLNISVS-PVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAAL 656 (980)
T ss_dssp HHHHHTTGGGCCCCC-CCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCcCC-CCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999997754 22111 000 135799999999999999888899999999999999999999999
Q ss_pred HhhhccCCchhhhHHHhHHHHHHHHHHhhhccCCCccCCCcchHHHHHHHHHHHHHHHHhcCCCChhHHhHHHHHHHHHH
Q 004950 374 LDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMV 453 (722)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~i~~l~~lakgf~~~~~~~~~~~~~~~~~~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v 453 (722)
+...... ++ . .++||+++|+|+++|||++.+.. .+|+..+|.+++++++++++.|+++..||||+|++||||+
T Consensus 657 ~~~~~~~--~~--~-~~i~~~i~al~~lakgf~~~~~~--~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i 729 (980)
T 3ibv_A 657 SSDLSAL--EN--I-ISVYCSLMAIGNFAKGFPARGSE--EVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRII 729 (980)
T ss_dssp TTSCC----CH--H-HHHHHHHHHHHHHHHTSCSCC-C--CCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHT
T ss_pred hhcccCc--cH--H-HHHHHHHHHHHHHhccCCcccCC--CCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 7654321 12 1 27899999999999999976322 2349999999999999999999999999999999999999
Q ss_pred HhcCcccccchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHhhccCCCCCCCCCCCCHHH
Q 004950 454 DTLGASVFPYLPKALEQLLAESEPKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEI 533 (722)
Q Consensus 454 ~~lg~~v~p~lp~li~~ll~~~~~~~~~~fL~~~~qli~~f~~~~~~~l~~ll~~l~~~v~~~l~~~~~~~~p~~~~d~~ 533 (722)
.|+|++++|++|++++.|+..++.+++++||+++||+||+||++++++++++++|+++|+|++|++ |+++||.+
T Consensus 730 ~~lg~~~~p~lp~~i~~ll~~~~~~e~~~fL~l~~qli~~f~~~~~~~l~~ll~~l~~~if~~l~~------~~~~td~~ 803 (980)
T 3ibv_A 730 NVVGPDMLPKVPQLISILLNSIDMNELVDVLSFISQLIHIYKDNMMEITNRMLPTLLMRIFSSLSA------APQGTDDA 803 (980)
T ss_dssp TTTHHHHTTTHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHTTC----------CCHH
T ss_pred HHccHhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CCCCcHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999996 35677999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeeecCCCCcCChHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhCCCCCCCCch
Q 004950 534 REVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDWCARPFVEEKVP 613 (722)
Q Consensus 534 r~~~~l~r~y~~fl~~i~~~~~~~vl~s~~~~~~l~~~l~~l~~~~~~~~d~~~~k~a~~~l~~li~~~~~~~~~~~~~~ 613 (722)
|++++|+|+|++|++++++|+++++++|+.|+++|+.++.+++++|.+++|+.++|+|+++|++|++.||++ .++|
T Consensus 804 r~~~~l~r~~~~fl~~i~~~~~~~v~~s~~n~~~l~~~l~~l~~~a~~~~d~~~~K~a~~~l~~~v~~~~~~----~~~~ 879 (980)
T 3ibv_A 804 VKQNDLRKSYISFILQLLNKGFGSILFTEENQVYFDPLINSILHFANLVGEPATQKSSIALVSKMVSLWGGK----DGIA 879 (980)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCTGGGGSHHHHTTHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHC-----------C
T ss_pred HHHHHHHHHHHHHHHHHHhCCchhhhcCCcchHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHCCC----Ccch
Confidence 999999999999999999999999999999999999999999999999999999999999999999999875 3489
Q ss_pred hHHHHHHHhhhhhhhhhcccCCCCCCCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCCCCCCHHHHHHHHHHhc
Q 004950 614 GFQSFMIEAFAMNCCLYSVLDKSFEFGDANTLVLFGEIVLAQKVMYEKFGNDFLVHFVTKGFPSAHCPPDLAEQYCQKLQ 693 (722)
Q Consensus 614 gf~~fl~~~~~~~~~~~~~~~~~F~~~Da~~~~~l~eia~~l~~l~~~~g~e~~~~l~~~~lP~~~~~~~~~~~f~~~l~ 693 (722)
||++|+++ ++|+ ||.+|++|+||++|||++.+++|||.++|++++|+|++|++||.+.|||++++|++.+++||++|+
T Consensus 880 gf~~f~~~-~~~~-~f~~p~~~~f~~~Daq~~~~~~e~~~~~k~~~~~~g~~~~~~l~~~~lp~~~~~~~~~~~~~~~l~ 957 (980)
T 3ibv_A 880 GFENFTLS-LTPL-CFEMPVNPNFNTRDGQSLVVLGELAGLQKIILEKLGDIYKSYLVTVYFPTVNFPDVMASEYLQALS 957 (980)
T ss_dssp CHHHHHHH-HHHH-HHHGGGC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTC----CCHHHHHHHC--
T ss_pred HHHHHHHH-HHHH-HHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcCCcCCCCHHHHHHHHHHHh
Confidence 99999999 9996 899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCchHHHHHHHHHHHHHhhcc
Q 004950 694 GNDIKALKSFYQSLIEKLRVQQ 715 (722)
Q Consensus 694 ~~~~k~~k~~~~~f~~~~r~~~ 715 (722)
+.|.|.|||||++|++++|||.
T Consensus 958 ~~~~k~f~~~~~~~~~~~~~~~ 979 (980)
T 3ibv_A 958 NLDSRSFKQFFQKFIQALKSGN 979 (980)
T ss_dssp --------------CHHHHC--
T ss_pred ccchhhHHHHHHHHHHHhhcCC
Confidence 8999999999999999999873
No 2
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=100.00 E-value=5.2e-57 Score=552.06 Aligned_cols=629 Identities=13% Similarity=0.172 Sum_probs=487.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhh-hcChhhHHHHHHHHHHHHHHHHHhhhcc-----CCccchhhHHHHHHHHHHHhc--
Q 004950 28 SELVSKVAALLTGYAMEVLDCVK-RLNAENANEASKKLLNEVLPSVFYVMQN-----CEVDTTFSIVQFLSGYVATMK-- 99 (722)
Q Consensus 28 ~e~~~~~a~L~~~~g~el~~~~~-~~~~~~~~~~~~~~l~~~~plvL~~~~~-----~d~~~~~~~~~F~~~~l~~lk-- 99 (722)
.++...++|+++.+|+.....+. .... ........+..+++.++.++++ +|++++..+++||+.+.+.+.
T Consensus 310 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~ 387 (971)
T 2x1g_F 310 EDIIVHIYMLFVSSVERHSTLLLSGITS--ADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAM 387 (971)
T ss_dssp SHHHHHHHHHHHHHHHHTHHHHHHHHHT--CCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcc--CcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhc
Confidence 38999999999999988766543 1000 0111234566888889998876 488889999999999987432
Q ss_pred ----cCCCChHHHHHHHHHHHHHHHHHcccCcccccCCccCCCCChhHHHHHHHHHHHHHHHHHHHHHcChhhHHHHHHH
Q 004950 100 ----SLSPLKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRN 175 (722)
Q Consensus 100 ----~~~~l~~~~~~~l~~Ll~~li~km~yp~~~~~~~d~~~~~~~ede~~F~e~Rk~l~~ll~~i~~l~~~l~l~~i~~ 175 (722)
+.+......++++.+++.++++||+||++++ | ++|+.||+++|.++|+.++++++.++.+.++.+++.+.+
T Consensus 388 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~----~-~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~~~~ 462 (971)
T 2x1g_F 388 SNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKS----L-AKWSSDDLECFRCYRQDISDTFMYCYDVLNDYILEILAA 462 (971)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHTSCCCTTT----T-SCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHhcCCCccc----c-cccCHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 1233456779999999999999999987753 2 234467789999999999999999999888888888888
Q ss_pred HHHHHhcC--CCCCChhhHHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhCCCCC-CChhHHHHHHHHHHHhhHHH
Q 004950 176 SLANAVTF--SADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPC-HSNRLVALVYLETVTRYMKF 252 (722)
Q Consensus 176 ~l~~~l~~--~~~~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~~i~~-~~hp~V~~~~~e~i~RY~~~ 252 (722)
.+.+.+++ .++.+|+++|||++++++++|++..+. ...+++++..+.+ ++. .+||.||.++++++|||++|
T Consensus 463 ~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~--l~~~d~~~~vr~~a~~~l~~~~~~ 536 (971)
T 2x1g_F 463 MLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAE--IPYEKLNVKLLGTALETMGSYCNW 536 (971)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHH--SCTTTSCHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHh--cCccccCHHHHHHHHHHHHHHHHH
Confidence 88877653 123689999999999999999998643 3678888886654 442 46999999999999999999
Q ss_pred HhhcCCChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhhhhhhccCCcccccCCCCch
Q 004950 253 IQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSED 332 (722)
Q Consensus 253 ~~~~p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L~~~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d 332 (722)
+..||+|++++|++++ .|+ + ++|+.+||++|.+||++|+..|.||+++|++.+..++.... .+.++
T Consensus 537 l~~~~~~l~~vl~~l~--~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~---------~~~~~ 602 (971)
T 2x1g_F 537 LMENPAYIPPAINLLV--RGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGR---------MKNSD 602 (971)
T ss_dssp HC----CHHHHHHHHH--HHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTT---------SCHHH
T ss_pred HhcCHHHHHHHHHHHH--HHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCC---------CChHH
Confidence 9999999999999999 688 4 77999999999999999999999999999999999886321 24567
Q ss_pred hhHHHHHHHHHHccCCCChhhhHHHHHHhHHHHHHHHHHHHHhhhccCCchhhhHHHhHHHHHHHHHHhhhccCCCccCC
Q 004950 333 GSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTS 412 (722)
Q Consensus 333 ~l~L~Eaig~Lis~~~~~~e~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~lakgf~~~~~~~ 412 (722)
+.++||++|.+++.. +++++..+++.++.|+++.++++.+.... +++ ....+.+.+..++.+..++.......
T Consensus 603 ~~~~~~ai~~i~~~~--~~~~~~~~~~~ll~~l~~~l~~~~~~~~~--~~~---~~~~~~~~l~~L~~~~~~l~~~~~~~ 675 (971)
T 2x1g_F 603 SVRLMFSIGKLMSLL--RPEEIPKYLDIIVSPCFEELQAICQADSK--TPA---ARIRTIFRLNMISTLFSSLNTDVDEQ 675 (971)
T ss_dssp HHHHHHHHHHHHHTS--CTTHHHHHHHHHHHHHHHHHHHHHTC-----CHH---HHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHHHhcCCC--Chh---hHHHHHHHHHHHHHHHhhcCCCcCcc
Confidence 999999999999974 46889999999999999999988754321 111 11224455555555444443321000
Q ss_pred C-----cchHHHHHHHHHHHHHHHHhcCCCChhHHhHHHHHHHHHHHhcCcccccchHHHHHHHHhcCChhhHHHHHHHH
Q 004950 413 S-----RPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEPKEMAGFLVLL 487 (722)
Q Consensus 413 ~-----~~~~~~~~~~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~lg~~v~p~lp~li~~ll~~~~~~~~~~fL~~~ 487 (722)
. .+++..++.++|+++..+++.+.++..|++++|.++++++.++|.++.|++|.+++.++..++.+++++|++++
T Consensus 676 ~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~~~~l~l~ 755 (971)
T 2x1g_F 676 ATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRCCAPTLEIS 755 (971)
T ss_dssp --------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC--CCHHHHHHH
T ss_pred cccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCCchHHHHHH
Confidence 0 23477899999999999999998899999999999999999999999999999999999988877789999999
Q ss_pred HHHHHHHhhh--HHHHHHhhhHHHHHHHHhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeeecCCCCc
Q 004950 488 NQLICKFNTL--VHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSR 565 (722)
Q Consensus 488 ~qli~~f~~~--~~~~l~~ll~~l~~~v~~~l~~~~~~~~p~~~~d~~r~~~~l~r~y~~fl~~i~~~~~~~vl~s~~~~ 565 (722)
++++++||.+ +.+.+.+++.+++.+++.+|++. + +++.++.+|++++||.|+++++++++..++.|
T Consensus 756 ~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~-----~---~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s---- 823 (971)
T 2x1g_F 756 KTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFEST-----P---EQNFSNISDTMETFFGCLTQIIKKIPQVLEDK---- 823 (971)
T ss_dssp HHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSC-----T---TTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCT----
T ss_pred HHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcc-----c---ccCCccCchHHHHHHHHHHHHHHhCcHHHcCC----
Confidence 9999999974 78889999999999999999863 1 45677889999999999999999999877654
Q ss_pred CC-hHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhCCCCCCCCchhHHHHHHHhhhhhhhhhcccCCCCCCCchhH
Q 004950 566 GY-LDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDWCARPFVEEKVPGFQSFMIEAFAMNCCLYSVLDKSFEFGDANT 644 (722)
Q Consensus 566 ~~-l~~~l~~l~~~~~~~~d~~~~k~a~~~l~~li~~~~~~~~~~~~~~gf~~fl~~~~~~~~~~~~~~~~~F~~~Da~~ 644 (722)
+. ++.++...+. ++.+.|+.+.|+|++||+++++.+.. .+.+.+++.+.+.++ +..++.. +.|+.+
T Consensus 824 ~~~l~~i~~~~~~-~l~~~~~~~~~s~~~fl~~~i~~~~~-------~~~~~~~~~~~g~~l-~~~l~~~----~~~~~~ 890 (971)
T 2x1g_F 824 TLAYDRLVFYAQR-GMTLPESGAIRNSIQFLTHFVMQSRN-------HAHVTEVVLATGEQT-LYTAMMC----VGYLTP 890 (971)
T ss_dssp TSCHHHHHHHHHH-HHTSSCSSHHHHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHH-HHHHHHH----HHTTSC
T ss_pred cccHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHhcCCc-------hHHHHHHHHHhHHHH-HHHHHHH----hcccCC
Confidence 45 7888885554 46689999999999999999966431 245677777654443 4444321 245566
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhc----cCCCCCCCHHHHHHHHHHh-cc-CCchHHHHHHHHHHHHHhhcc
Q 004950 645 LVLFGEIVLAQKVMYEKFGNDFLVHFVTK----GFPSAHCPPDLAEQYCQKL-QG-NDIKALKSFYQSLIEKLRVQQ 715 (722)
Q Consensus 645 ~~~l~eia~~l~~l~~~~g~e~~~~l~~~----~lP~~~~~~~~~~~f~~~l-~~-~~~k~~k~~~~~f~~~~r~~~ 715 (722)
+..+.+++.+|+++..++|+++..|+.+. .||+.+++++++++|+++| .. .+.|+||+++++|+..+||-.
T Consensus 891 ~s~~~~~a~~l~~l~~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~f~~~l~~~~~~~r~~~~~~~~f~~~~r~~~ 967 (971)
T 2x1g_F 891 RSQVDKFADILLAMNRKYAAEMAVWMKSLMSTPNFPTQLITDADKTRYTALIIKEKVNKRLLQQHLSEMAMKTRGLT 967 (971)
T ss_dssp GGGGGGGHHHHHHHHHHHHHHHHHHHHHHHTSSSCSCSSSCHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHC--
T ss_pred hhHHHHHHHHHHHHHHHCcHHHHHHHHHHhcccCCCCCcCCHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHcCcc
Confidence 77788999999999999999999999854 6999999999999999999 44 489999999999999999854
No 3
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=100.00 E-value=4.2e-53 Score=517.09 Aligned_cols=622 Identities=15% Similarity=0.173 Sum_probs=498.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhcChhhHHHHHHHHHHHHHHHHHhhhcc-----CCccchhhHHHHHHHHHHHhc
Q 004950 25 DGESELVSKVAALLTGYAMEVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQN-----CEVDTTFSIVQFLSGYVATMK 99 (722)
Q Consensus 25 ~~D~e~~~~~a~L~~~~g~el~~~~~~~~~~~~~~~~~~~l~~~~plvL~~~~~-----~d~~~~~~~~~F~~~~l~~lk 99 (722)
++|.++..+++++++.+|+.....+.+..+ ....+..++++++.+.++ .|++++..+++||+.+++.+.
T Consensus 299 ~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~------~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~ 372 (963)
T 2x19_B 299 NGDMETSHGICRIAVALGENHSRALLDQVE------HWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDIL 372 (963)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHCGG------GHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHhHHHHHcCcc------chHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHH
Confidence 356789999999999999987765432100 123456888899999886 477788899999999998442
Q ss_pred cC-----CCChHHHHHHHHHHHHHHHHHcccCcccccCCccCCCCChhHHHHHHHHHHHHHHHHHHHHHcChhhHHHHHH
Q 004950 100 SL-----SPLKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIR 174 (722)
Q Consensus 100 ~~-----~~l~~~~~~~l~~Ll~~li~km~yp~~~~~~~d~~~~~~~ede~~F~e~Rk~l~~ll~~i~~l~~~l~l~~i~ 174 (722)
+. +.....+++++.+|+.+++.||.||++++ | ++|++||+++|.+||++++++++.++.+.++.+++.+.
T Consensus 373 ~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~----~-~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~~l~~~~ 447 (963)
T 2x19_B 373 SFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEE----Y-GFWSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLY 447 (963)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHH----H-HTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCccc----c-cCCChhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 21 23445678999999999999999987753 2 23345677899999999999999999987778888888
Q ss_pred HHHHHHhcCC-CCCChhhHHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHH
Q 004950 175 NSLANAVTFS-ADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFI 253 (722)
Q Consensus 175 ~~l~~~l~~~-~~~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~ 253 (722)
+.+.+.+++. ++.+|+++|++++++++++|++..+ ....++++++.+.+ ++. +||.||.++++++|||++|+
T Consensus 448 ~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~----~~~~l~~l~~~l~~--l~~-~~~~vr~~~~~~l~~~~~~l 520 (963)
T 2x19_B 448 DKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVN----YSDVVPGLIGLIPR--ISI-SNVQLADTVMFTIGALSEWL 520 (963)
T ss_dssp HHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSS----CCSHHHHHHHHGGG--SCC-CSHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCch----hhHHHHHHHHHHHh--CCC-CcHHHHHHHHHHHHHHHHHH
Confidence 8888887432 3468999999999999999999753 24678888886664 443 69999999999999999999
Q ss_pred hhcCCChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhhhhhhccCCcccccCCCCchh
Q 004950 254 QEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDG 333 (722)
Q Consensus 254 ~~~p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L~~~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~ 333 (722)
..||+|++++++.++ .|+++ ++|+.+||++|.+||+.|+.++.||+++|++.+..++... + .+.+++
T Consensus 521 ~~~~~~l~~vl~~l~--~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~--------~-~~~~~~ 587 (963)
T 2x19_B 521 ADHPVMINSVLPLVL--HALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQ--------I-HKTSQC 587 (963)
T ss_dssp HHCHHHHTTTHHHHH--HHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTT--------C-SCHHHH
T ss_pred HhCHHHHHHHHHHHH--HHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccC--------C-CChHHH
Confidence 999999999999999 78865 7899999999999999999999999999999999887521 1 135678
Q ss_pred hHHHHHHHHHHccCCCChhhhHHHHHHhHHHHHHHHHHHHHhhhccCCchhhhHHHhHHHHHHHHHHhhhccCCCccC--
Q 004950 334 SHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVT-- 411 (722)
Q Consensus 334 l~L~Eaig~Lis~~~~~~e~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~lakgf~~~~~~-- 411 (722)
.++|||+|.+++.. +++++..+++.++.|+.+.++++.+.. .++ .....+.+.+.+++.++++++.....
T Consensus 588 ~~~~eai~~i~~~~--~~~~~~~~~~~l~~~l~~~l~~~~~~~---~~~---~~~~~~~~~l~~l~~i~~~~~~~~~~~~ 659 (963)
T 2x19_B 588 MWLMQALGFLLSAL--QVEEILKNLHSLISPYIQQLEKLAEEI---PNP---SNKLAIVHILGLLSNLFTTLDISHHEDD 659 (963)
T ss_dssp HHHHHHHHHHHTTS--CHHHHHHHHHHHHHHHHHHHHHHHSSC---SCH---HHHHHHHHHHHHHHHHHHHCCSSCCC--
T ss_pred HHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHHHHHHhCC---CCH---HHHHHHHHHHHHHHHHHHHcCCCccccc
Confidence 99999999999875 467899999999999999999875422 122 22234678999999999999753210
Q ss_pred ------------CCcchHHHHHHHHHHHHHHHHhcCCCChhHHhHHHHHHHHHHHhcCcccccchHHHHHHHHhcCChhh
Q 004950 412 ------------SSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEPKE 479 (722)
Q Consensus 412 ------------~~~~~~~~~~~~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~lg~~v~p~lp~li~~ll~~~~~~~ 479 (722)
....++..++.++++++..+++.|.++..++|++|.++++++.++|..+.|++|++++.++..+...+
T Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 739 (963)
T 2x19_B 660 HEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIP 739 (963)
T ss_dssp -------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHSC
T ss_pred ccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcCC
Confidence 11235778999999999999999999999999999999999999999999999999999888776656
Q ss_pred HHHHHHHHHHHHHHHhhh--HHHHHHhhhHHHHHHHHhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCe
Q 004950 480 MAGFLVLLNQLICKFNTL--VHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSS 557 (722)
Q Consensus 480 ~~~fL~~~~qli~~f~~~--~~~~l~~ll~~l~~~v~~~l~~~~~~~~p~~~~d~~r~~~~l~r~y~~fl~~i~~~~~~~ 557 (722)
..+++++++.++..||.+ +.+.+.+++..++..++++++. .+...|| +.++||.|+.+++.+.+..
T Consensus 740 ~~~~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~-----~~~~~pd-------~~~~~f~ll~~~~~~~~~~ 807 (963)
T 2x19_B 740 QASALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQ-----GPRDHPD-------IVDSFMQLLAQALKRKPDL 807 (963)
T ss_dssp CHHHHHHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHH-----CTTTCHH-------HHHHHHHHHHHHHHHCGGG
T ss_pred ccHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhh-----CcccCch-------HHHHHHHHHHHHHHhCcHH
Confidence 789999999999999864 5677778888888898988874 2333444 9999999999999999876
Q ss_pred eecCCCCcCC-hHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhCCCCCCCCchhHHHHHHHhhhhhhhhhcccCCC
Q 004950 558 VFLSPKSRGY-LDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDWCARPFVEEKVPGFQSFMIEAFAMNCCLYSVLDKS 636 (722)
Q Consensus 558 vl~s~~~~~~-l~~~l~~l~~~~~~~~d~~~~k~a~~~l~~li~~~~~~~~~~~~~~gf~~fl~~~~~~~~~~~~~~~~~ 636 (722)
++ + .+. ++.++..+.. ++.+.|+.+.|+|+++|.++++.|++. +++.+|+.+.+..+ |..++..
T Consensus 808 ~~-~---~~~~~~~i~~~~~~-~l~~~~~~~~~~~l~~l~~l~~~~~~~-------~~~~~~~~~~~~~l-~~~l~~~-- 872 (963)
T 2x19_B 808 FL-C---ERLDVKAVFQCAVL-ALKFPEAPTVKASCGFFTELLPRCGEV-------ESVGKVVQEDGRML-LIAVLEA-- 872 (963)
T ss_dssp GG-C---TTSCHHHHHHHHHH-HTTCSCHHHHHHHHHHHHHHGGGTTSS-------CHHHHHTTTSHHHH-HHHHHHH--
T ss_pred Hc-C---CcccHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHhcCCCh-------HHHHHHHHHHHHHH-HHHHHHH--
Confidence 64 3 234 8888887776 467899999999999999999887632 35555555433222 3333211
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc----cCCCCCCCHHHHHHHHHHhcc--CCchHHHHHHHHHHHH
Q 004950 637 FEFGDANTLVLFGEIVLAQKVMYEKFGNDFLVHFVTK----GFPSAHCPPDLAEQYCQKLQG--NDIKALKSFYQSLIEK 710 (722)
Q Consensus 637 F~~~Da~~~~~l~eia~~l~~l~~~~g~e~~~~l~~~----~lP~~~~~~~~~~~f~~~l~~--~~~k~~k~~~~~f~~~ 710 (722)
+.|...+..+.+++++|+.++.++|+++.+|+.+. .+|+.+++++++++|++++.+ .|.|.||+++++|+..
T Consensus 873 --l~~~~~~~~~~~~~~il~~l~~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~f~~~l~~~~~~~~~f~~~l~~F~~~ 950 (963)
T 2x19_B 873 --IGGQASRSLMDCFADILFALNKHCFSLLSMWIKEALQPPGFPSARLSPEQKDTFSQQILRERVNKRRVKEMVKEFTLL 950 (963)
T ss_dssp --HTTTSCGGGHHHHHHHHHHHHHHSHHHHHHHHHHHTCSTTSSCTTCCHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred --hcccCChhHHHHHHHHHHHHHHHChHHHHHHHHHHhcccCCCCCcCCHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 24555667778999999999999999998899743 699999999999999999954 3889999999999999
Q ss_pred Hhhc
Q 004950 711 LRVQ 714 (722)
Q Consensus 711 ~r~~ 714 (722)
+||-
T Consensus 951 ~r~~ 954 (963)
T 2x19_B 951 CRGL 954 (963)
T ss_dssp HHC-
T ss_pred HcCc
Confidence 9984
No 4
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=100.00 E-value=1.3e-45 Score=446.64 Aligned_cols=622 Identities=15% Similarity=0.206 Sum_probs=450.2
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhcChhhHHHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHhccCCC
Q 004950 24 EDGESELVSKVAALLTGYAMEVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLSP 103 (722)
Q Consensus 24 ~~~D~e~~~~~a~L~~~~g~el~~~~~~~~~~~~~~~~~~~l~~~~plvL~~~~~~d~~~~~~~~~F~~~~l~~lk~~~~ 103 (722)
.++|.|+..++|+++.++|+.++.++++. + +.+ ..+...+.+++.|.+++|.+++..+|+||+.+.+.+-+.+.
T Consensus 307 ~~~D~e~~~~l~~l~~~~~e~~~~li~~~-~-~~~----~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~ 380 (1023)
T 4hat_C 307 NGNDQSFLQDLAMFLTTYLARNRALLESD-E-SLR----ELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPL 380 (1023)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHGGGGTSC-G-GGH----HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhCC-c-chh----HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchH
Confidence 35689999999999999999999876632 1 112 23334556788899999999999999999999987644344
Q ss_pred ChHHHHHHHHHHHHHHHHHcccCccc----ccCCccCCC--CChhHHHHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHH
Q 004950 104 LKEEQRLHAGQILEVILTQIRYDPMY----RNNLDVLDK--IGIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSL 177 (722)
Q Consensus 104 l~~~~~~~l~~Ll~~li~km~yp~~~----~~~~d~~~~--~~~ede~~F~e~Rk~l~~ll~~i~~l~~~l~l~~i~~~l 177 (722)
....+++++.+|+.++++||+||++. ++..+|.++ .+.|+.+.|+++| +++..++.++++.++..+.+.+
T Consensus 381 ~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~R----d~L~~l~~l~~~~~~~~~~~~l 456 (1023)
T 4hat_C 381 KKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSER----EVLVYLTHLNVIDTEEIMISKL 456 (1023)
T ss_dssp TGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHH----HHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHH----HHHHHHhccCHHHHHHHHHHHH
Confidence 66789999999999999999999842 111244222 1457889999999 8888888888888888888888
Q ss_pred HHHhcCCCCCChhhHHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhCCCCC-----CChhHHHHHHHHHHHhhHHH
Q 004950 178 ANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPC-----HSNRLVALVYLETVTRYMKF 252 (722)
Q Consensus 178 ~~~l~~~~~~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~~i~~-----~~hp~V~~~~~e~i~RY~~~ 252 (722)
.+.+.+ ++.+|+.+||++|++++++|++.++. .+..++++++.|++ ++. ++++.||.++++++|||++|
T Consensus 457 ~~~l~~-~~~~W~~~EA~~~a~gaIa~~~~~~~---e~~~l~~vi~~Ll~--l~~~~~~~d~k~~v~~t~~~~lGry~~w 530 (1023)
T 4hat_C 457 ARQIDG-SEWSWHNINTLSWAIGSISGTMSEDT---EKRFVVTVIKDLLD--LCVKKRGKDNKAVVASDIMYVVGQYPRF 530 (1023)
T ss_dssp HHHHSS-TTCCHHHHHHHHHHHHHTTTSSCHHH---HHHHHHHHHHHHHH--HHHHCCSHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhcC-CCCCHHHHHHHHHHHHHHHcCCCchh---HHHHHHHHHHHHHH--hhhccccCcchHHHHHHHHHHHHHHHHH
Confidence 887754 34789999999999999999998652 24678888887776 332 36788999999999999999
Q ss_pred HhhcCCChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhhccch--------HHHHHHHHHhhhhhhhhccCCccc
Q 004950 253 IQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLV--------PFIENILQSLQDTIARFTSMNYAS 324 (722)
Q Consensus 253 ~~~~p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L~--------~~~~~il~~l~~ll~~~~~~~~~~ 324 (722)
+..||+||+++|++++ .|++.++++|+..||.+|.++|++|+.++. ||+++|++.+..+.. .
T Consensus 531 l~~~~~~L~~vl~~L~--~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~-~------- 600 (1023)
T 4hat_C 531 LKAHWNFLRTVILKLF--EFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTA-D------- 600 (1023)
T ss_dssp HHHCHHHHHHHHHHHH--HHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHT-T-------
T ss_pred HhccHHHHHHHHHHHH--HHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHH-h-------
Confidence 9999999999999999 899888999999999999999999999884 699999999988764 1
Q ss_pred ccCCCCchhhHHHHHHHHHHccCCCChhhhHHHHHHhHHHHHHHHHHHHHhhhccCCc--hhhhHHHhHHHHHHHHHHhh
Q 004950 325 KELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPE--ESTAKFANIQQIIMAINALS 402 (722)
Q Consensus 325 ~~~~~~~d~l~L~Eaig~Lis~~~~~~e~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~i~~l~~la 402 (722)
++.++...+|||+|.+++..+ +.+.+.++++.+++|+.+.++++.+++.. ++. .+......+.+++.+.++++
T Consensus 601 ---l~~~~~~~lyeai~~vi~~~~-~~~~~~~~l~~L~~~~~~~~~~l~~~~~~-~~~~~~d~~~~~~l~~il~~~~~v~ 675 (1023)
T 4hat_C 601 ---LQPQQVHTFYKACGIIISEER-SVAERNRLLSDLMQLPNMAWDTIVEQSTA-NPTLLLDSETVKIIANIIKTNVAVC 675 (1023)
T ss_dssp ---SCHHHHHHHHHHHHHHHTTCC-SHHHHHHHHHHHTHHHHHHHHHHHHHHHH-CTTGGGCHHHHHHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHHHHHhCC-CHhhHHHHHHHHHHhHHHHHHHHHHHHhc-CchhhcCHHHHHHHHHHHHHHHHHH
Confidence 245678899999999999964 45569999999999999999999875432 111 01122344788888988888
Q ss_pred hccCCCccCCCcchHHHHHHHHHHHHHHHHhcCCC---------------ChhHHhHHHHHHH----HHHHh-cCcc---
Q 004950 403 KGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPK---------------VEPLRCKVTSFIH----RMVDT-LGAS--- 459 (722)
Q Consensus 403 kgf~~~~~~~~~~~~~~~~~~~~~vi~~~l~~~~~---------------~~~Vre~~~~~~~----r~v~~-lg~~--- 459 (722)
++... ++...+..+++.++.+...+.+ .+.+| .+++.+ |++.+ .+..
T Consensus 676 ~~lg~--------~f~~~~~~i~~~~l~~y~~~s~~i~~~~~~~g~~~~~~~~~r--~~r~ik~~il~l~~~~i~~~~~~ 745 (1023)
T 4hat_C 676 TSMGA--------DFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVR--GLRTIKKEILKLVETYISKARNL 745 (1023)
T ss_dssp HHHGG--------GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHH--HHHHHHHHHHHHHHHHHHHCSCH
T ss_pred HHhcH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHH--HHHHHHHHHHHHHHHHHhcCCCH
Confidence 87763 2444455555555544433311 11222 233332 22222 1211
Q ss_pred ---cccchHHHHHHHHhcCCh----hhHHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHhhccCCCCCCCCCCCCHH
Q 004950 460 ---VFPYLPKALEQLLAESEP----KEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEE 532 (722)
Q Consensus 460 ---v~p~lp~li~~ll~~~~~----~~~~~fL~~~~qli~~f~~~~~~~l~~ll~~l~~~v~~~l~~~~~~~~p~~~~d~ 532 (722)
...++|++++.++..+.. .+.+++|++.+.+|+|+++.+.+.+..++..+++.++.+++. +-.+.||
T Consensus 746 ~~~~~~~~~~l~~~vl~dY~~~~~~~r~~~vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~-----~~~~~Pe- 819 (1023)
T 4hat_C 746 DDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINK-----DFTEYPE- 819 (1023)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSS-----CSSSSHH-
T ss_pred HHHHHHhHHHHHHHHHHHHHhCChhhccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhc-----ccccChH-
Confidence 234678888888776532 356999999999999999988899999999999999999995 2344455
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeeecCCCCcCChHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhCCCCCCCCc
Q 004950 533 IREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDWCARPFVEEKV 612 (722)
Q Consensus 533 ~r~~~~l~r~y~~fl~~i~~~~~~~vl~s~~~~~~l~~~l~~l~~~~~~~~d~~~~k~a~~~l~~li~~~~~~~~~~~~~ 612 (722)
.+.+||.|+.+++++.+..++..+. +.+..++.+++- |..|++..+..+++.++.+++.......+ .+..
T Consensus 820 ------~r~~ff~ll~~~~~~~f~~~~~~~~--~~~~~~~~~~~~-a~~h~~r~~~~~~l~~~~~ll~~~~~~~~-~~~~ 889 (1023)
T 4hat_C 820 ------HRVEFYKLLKVINEKSFAAFLELPP--AAFKLFVDAICW-AFKHNNRDVEVNGLQIALDLVKNIERMGN-VPFA 889 (1023)
T ss_dssp ------HHHHHHHHHHHHHHHCTHHHHTSCH--HHHHHHHHHHHH-HHTCCCHHHHHHHHHHHHHHHHHHHHHCS-SHHH
T ss_pred ------HHHHHHHHHHHHHHHChHHHHcCCH--HHHHHHHHHHHH-HcCCCchHHHHHHHHHHHHHHHHHHhcCC-hHHH
Confidence 8999999999999988765554332 247777876664 67888888888999999999977653211 0111
Q ss_pred hhH-HHHHHHhhhhhhhhhcccCCCCCCCchhHHHHHHHHHHHHHHHHHHh--------------------hhH----HH
Q 004950 613 PGF-QSFMIEAFAMNCCLYSVLDKSFEFGDANTLVLFGEIVLAQKVMYEKF--------------------GND----FL 667 (722)
Q Consensus 613 ~gf-~~fl~~~~~~~~~~~~~~~~~F~~~Da~~~~~l~eia~~l~~l~~~~--------------------g~e----~~ 667 (722)
..| .+|...-+.. .|.+.. |.-....+..-+.+|+.|...- ..+ |+
T Consensus 890 ~~f~~~~~~~~~~~--~~~v~t-------d~~h~~~f~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~ 960 (1023)
T 4hat_C 890 NEFHKNYFFIFVSE--TFFVLT-------DSDHKSGFSKQALLLMKLISLVYDNKISVPLYQEAEVPQGTSNQVYLSQYL 960 (1023)
T ss_dssp HHHHHHHHHHHHHH--HHHHHH-------SSSCGGGHHHHHHHHHHHHHHHHTTCCCSCSSCTTSSCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--HHHHHh-------CchhhhhHHHHHHHHHHHHHHHHcCCcccccCCccccCCCCchHHHHHHHH
Confidence 111 2222221111 122221 1111223334455555544321 122 33
Q ss_pred HHHHhccCCCCCCCHHHHHHHHHHhcc--CCchHHHHHHHHHHHHHhh
Q 004950 668 VHFVTKGFPSAHCPPDLAEQYCQKLQG--NDIKALKSFYQSLIEKLRV 713 (722)
Q Consensus 668 ~~l~~~~lP~~~~~~~~~~~f~~~l~~--~~~k~~k~~~~~f~~~~r~ 713 (722)
..+....||+ +++++...|++.+.+ .|.+.||.+++||..++|.
T Consensus 961 ~~~l~~~fp~--~~~~qi~~fv~~l~~~~~~~~~f~~~lrdfli~~ke 1006 (1023)
T 4hat_C 961 ANMLSNAFPH--LTSEQIASFLSALTKQCKDLVVFKGTLRDFLVQIKE 1006 (1023)
T ss_dssp HHHHHHHCTT--SCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhCCC--CCHHHHHHHHHHHHHccCCHHHHHHHHHHHhHHhHh
Confidence 3333458997 689999999999976 3679999999999999986
No 5
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=100.00 E-value=4.9e-45 Score=449.01 Aligned_cols=626 Identities=15% Similarity=0.191 Sum_probs=447.7
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhcChhhHHHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHhccCCC
Q 004950 24 EDGESELVSKVAALLTGYAMEVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLSP 103 (722)
Q Consensus 24 ~~~D~e~~~~~a~L~~~~g~el~~~~~~~~~~~~~~~~~~~l~~~~plvL~~~~~~d~~~~~~~~~F~~~~l~~lk~~~~ 103 (722)
.++|.|+.++++++++++|+.++.+++.. .+ ...++..++++++.+..++|++++..+++||+.+.+.+.+.+.
T Consensus 307 ~~~d~~~~~~l~~~~~~~~~~~~~~~~~~--~~----~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~ 380 (1049)
T 3m1i_C 307 NGNDQSFLQDLAMFLTTYLARNRALLESD--ES----LRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPL 380 (1049)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHSC--GG----GHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHcCC--hh----hHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchh
Confidence 45688999999999999999998887642 11 1345678999999999999889999999999999885421234
Q ss_pred ChHHHHHHHHHHHHHHHHHcccCcccccCCccCCC-C------ChhHHHHHHHHHHHHHHHHHHHHHcChhhHHHHHHHH
Q 004950 104 LKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDK-I------GIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNS 176 (722)
Q Consensus 104 l~~~~~~~l~~Ll~~li~km~yp~~~~~~~d~~~~-~------~~ede~~F~e~Rk~l~~ll~~i~~l~~~l~l~~i~~~ 176 (722)
....+++++.+|+.+++.||+||+|. +|.++ + +.+|+|.+ ++|+.++++++.++.++++.++.++.+.
T Consensus 381 ~~~~~~~~l~~Lv~~ll~~m~~~ed~----~~~~dd~~e~~r~~~~d~d~~-~~~~~~~~~L~~l~~~~~~~~l~~v~~~ 455 (1049)
T 3m1i_C 381 KKHIYEEICSQLRLVIIENMVRPEEV----LVVENDEGEIVREFVKESDTI-QLYKSEREVLVYLTHLNVIDTEEIMISK 455 (1049)
T ss_dssp CGGGGHHHHHHHHHHHHHTCCCCTTC----CEEECTTSCEEECSSCCHHHH-HHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcce----eeeeCCCCcchHhhhccchHH-HHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 66778899999999999999998754 33211 1 11223333 6899999999999999999999999999
Q ss_pred HHHHhcCCCCCChhhHHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhC-CCC--CCChhHHHHHHHHHHHhhHHHH
Q 004950 177 LANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQT-KLP--CHSNRLVALVYLETVTRYMKFI 253 (722)
Q Consensus 177 l~~~l~~~~~~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~-~i~--~~~hp~V~~~~~e~i~RY~~~~ 253 (722)
+.+.+++ +..+|+++|+++|+++++++++.... ++..+++++..+++. ... +++||.|+.++++++|||++|+
T Consensus 456 l~~~l~~-~~~~W~~~eaal~algsia~~~~~~~---e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~ 531 (1049)
T 3m1i_C 456 LARQIDG-SEWSWHNINTLSWAIGSISGTMSEDT---EKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFL 531 (1049)
T ss_dssp HHHHHTS-SSCCHHHHHHHHHHHHHTTTSSCHHH---HHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHhCC-CCCCHHHHHHHHHHHHHHhcccCchh---hHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHH
Confidence 9988763 34789999999999999999987542 124588888887762 111 2489999999999999999999
Q ss_pred hhcCCChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhhccch--------HHHHHHHHHhhhhhhhhccCCcccc
Q 004950 254 QEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLV--------PFIENILQSLQDTIARFTSMNYASK 325 (722)
Q Consensus 254 ~~~p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L~--------~~~~~il~~l~~ll~~~~~~~~~~~ 325 (722)
..||++++++|+.++ .|+++++++|+.+||++|.+||+.|+.++. ||+++|++.+..++..
T Consensus 532 ~~~~~~l~~vl~~ll--~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~--------- 600 (1049)
T 3m1i_C 532 KAHWNFLRTVILKLF--EFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTAD--------- 600 (1049)
T ss_dssp HHCHHHHHHHHHHHH--HHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTT---------
T ss_pred HhHHHHHHHHHHHHH--HHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHh---------
Confidence 999999999999999 689999999999999999999999999987 9999999999887641
Q ss_pred cCCCCchhhHHHHHHHHHHccCCCChhhhHHHHHHhHHHHHHHHHHHHHhhhccCC-chhhhHHHhHHHHHHHH----HH
Q 004950 326 ELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNP-EESTAKFANIQQIIMAI----NA 400 (722)
Q Consensus 326 ~~~~~~d~l~L~Eaig~Lis~~~~~~e~~~~~l~~ll~pl~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~i~~l----~~ 400 (722)
.+.++..++|||+|.+++..+ +++++..+++.+++|+.++++++++......+ ..+......+...+.++ .+
T Consensus 601 --~~~~~~~~~~eai~~ii~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~ 677 (1049)
T 3m1i_C 601 --LQPQQVHTFYKACGIIISEER-SVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTS 677 (1049)
T ss_dssp --SCHHHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 145678899999999999865 56789999999999999999998865432111 10111112233344444 44
Q ss_pred hhhccCCCccCCCcchHHHHHHHHHHHHH-------HHHhcCCC----C----------hhHHhHHHHHHHHHHHhcCcc
Q 004950 401 LSKGFNERLVTSSRPAIGLMFKQTLDVLL-------QILVVFPK----V----------EPLRCKVTSFIHRMVDTLGAS 459 (722)
Q Consensus 401 lakgf~~~~~~~~~~~~~~~~~~~~~vi~-------~~l~~~~~----~----------~~Vre~~~~~~~r~v~~lg~~ 459 (722)
++++|.+ .+..++...+.++. .....-+. . +.+......+.+++ .+++..
T Consensus 678 l~~~f~p--------~~~~i~~~~l~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~l~~ll~~~~~~~-~~l~~~ 748 (1049)
T 3m1i_C 678 MGADFYP--------QLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKA-RNLDDV 748 (1049)
T ss_dssp HGGGGHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHC-SCHHHH
T ss_pred hhHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHccCchhhhhHHHHHHHHHHHHHHHHHHHHHHhC-CCHHHH
Confidence 5555542 12222322222211 11110000 0 11111222233333 334445
Q ss_pred cccchHHHHHHHHhcCCh----hhHHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHhhccCCCCCCCCCCCCHHHHH
Q 004950 460 VFPYLPKALEQLLAESEP----KEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIRE 535 (722)
Q Consensus 460 v~p~lp~li~~ll~~~~~----~~~~~fL~~~~qli~~f~~~~~~~l~~ll~~l~~~v~~~l~~~~~~~~p~~~~d~~r~ 535 (722)
+.|++|.++..++..+.. .+...++++++.++.++++.+.+.+..++..++.++++++++ +++..||
T Consensus 749 ~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~l~~~ii~~~~~~~~~~l~~i~~~l~~~~~~~i~~-----~~~~~pd---- 819 (1049)
T 3m1i_C 749 VKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINK-----DFTEYPE---- 819 (1049)
T ss_dssp HHHTHHHHHHHHHHHHHHSCGGGCCTHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSS-----CSSSSHH----
T ss_pred HHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhc-----chhhCHH----
Confidence 678899998888876421 123669999999999999888899999999999999999984 2444555
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeeec-CCCCcCChHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhCCCCCCCCchh
Q 004950 536 VQELQRTLYTFLHVIATHDLSSVFL-SPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDWCARPFVEEKVPG 614 (722)
Q Consensus 536 ~~~l~r~y~~fl~~i~~~~~~~vl~-s~~~~~~l~~~l~~l~~~~~~~~d~~~~k~a~~~l~~li~~~~~~~~~~~~~~g 614 (722)
++++||.|+.+++++.+..++- ++ ..+..++...+. ++.++|+.+.|+|+++|.++++.|....+ +.
T Consensus 820 ---~~~~~f~ll~~i~~~~~~~l~~~~~---~~~~~v~~~~~~-al~~~~~~~~~~~l~~l~~l~~~~~~~~~-----~~ 887 (1049)
T 3m1i_C 820 ---HRVEFYKLLKVINEKSFAAFLELPP---AAFKLFVDAICW-AFKHNNRDVEVNGLQIALDLVKNIERMGN-----VP 887 (1049)
T ss_dssp ---HHHHHHHHHHHHHHHCTHHHHHSCH---HHHHHHHHHHHH-HHTCCSHHHHHHHHHHHHHHHHHHHHSCS-----CH
T ss_pred ---HHHHHHHHHHHHHHhCHHHHHcCCH---HHHHHHHHHHHH-HhCCCCchHHHHHHHHHHHHHHHHHhcCC-----hH
Confidence 9999999999999998865542 22 136667775554 57899999999999999999988864211 12
Q ss_pred HHHHHHHhhhhhhhhhcccCCCCCCCchhHHHHHHHHHHHHHHHHHHh--------------------hh-HHHHHHH--
Q 004950 615 FQSFMIEAFAMNCCLYSVLDKSFEFGDANTLVLFGEIVLAQKVMYEKF--------------------GN-DFLVHFV-- 671 (722)
Q Consensus 615 f~~fl~~~~~~~~~~~~~~~~~F~~~Da~~~~~l~eia~~l~~l~~~~--------------------g~-e~~~~l~-- 671 (722)
+.+-.++++.+..+-.++. .+.|...+.-+...+.+|+.+.... .. .+.+|+.
T Consensus 888 ~~~~f~~~~~~~l~~~~~~----~l~~~~h~s~~~~~~~~l~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ 963 (1049)
T 3m1i_C 888 FANEFHKNYFFIFVSETFF----VLTDSDHKSGFSKQALLLMKLISLVYDNKISVPLYQEAEVPQGTSNQVYLSQYLANM 963 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHSTTCGGGHHHHHHHHHHHHHHHHTTCCCSCSSCGGGSSTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHhcchHhhhHHHHHHHHHHHHHHHhcCcccccccCccccCCCCCcHHHHHHHHHHH
Confidence 2222223222221122111 1123344566678899999987532 11 1234554
Q ss_pred -hccCCCCCCCHHHHHHHHHHhccC--CchHHHHHHHHHHHHHhhc
Q 004950 672 -TKGFPSAHCPPDLAEQYCQKLQGN--DIKALKSFYQSLIEKLRVQ 714 (722)
Q Consensus 672 -~~~lP~~~~~~~~~~~f~~~l~~~--~~k~~k~~~~~f~~~~r~~ 714 (722)
...+|+ +++++++.|++++... |...||..+++|+..+|+-
T Consensus 964 l~~~~~~--~~~~~~~~f~~~l~~~~~~~~~f~~~~rdf~~~~~~~ 1007 (1049)
T 3m1i_C 964 LSNAFPH--LTSEQIASFLSALTKQYKDLVVFKGTLRDFLVQIKEV 1007 (1049)
T ss_dssp HHHHCTT--SCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTSS
T ss_pred HHHhCCC--CCHHHHHHHHHHHHHccCCHHHHHHHHHHHhHhhhhh
Confidence 235675 7899999999998653 5567999999999999984
No 6
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=100.00 E-value=2.6e-41 Score=407.04 Aligned_cols=619 Identities=14% Similarity=0.222 Sum_probs=440.4
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhcChhhHHHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHhc-cC-
Q 004950 24 EDGESELVSKVAALLTGYAMEVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMK-SL- 101 (722)
Q Consensus 24 ~~~D~e~~~~~a~L~~~~g~el~~~~~~~~~~~~~~~~~~~l~~~~plvL~~~~~~d~~~~~~~~~F~~~~l~~lk-~~- 101 (722)
.++|.||..++|+++.++|+.++.++++. +. .. ..+...+.+++.|.+++|.+++..+|+||+.+.+.+- ..
T Consensus 314 ~~~d~e~~~~l~~~f~~~~e~~~~lIe~~-p~-~~----~~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~ 387 (1073)
T 3gjx_A 314 KDDEQNFIQNLSLFLCTFLKEHGQLLEKR-LN-LR----EALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESP 387 (1073)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHC-GG-GH----HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhcC-cc-ch----HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45788999999999999999999987642 21 11 2334566778899999999999999999999877662 11
Q ss_pred -----CC------------ChHHHHHHHHHHHHHHHHHcccCcccccCCccCCCCChhHHHHHH---------HHHHHHH
Q 004950 102 -----SP------------LKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMV---------EYRKDLL 155 (722)
Q Consensus 102 -----~~------------l~~~~~~~l~~Ll~~li~km~yp~~~~~~~d~~~~~~~ede~~F~---------e~Rk~l~ 155 (722)
.+ -+..+++++.+|..+++.||.||++.-.. | +|+.+.|+ +.++.++
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~-e------~e~ge~~re~~~d~~~~~ly~~mr 460 (1073)
T 3gjx_A 388 FSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVV-E------NDQGEVVREFMKDTDSINLYKNMR 460 (1073)
T ss_dssp SCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEE-E------CSSSCEEEEECSSCHHHHHHHHHH
T ss_pred ccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCcccccc-C------cccchHHHHHHhhcchHHHHHHHH
Confidence 11 12337999999999999999999864210 0 01111222 3566777
Q ss_pred HHHHHHHHcChhhHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhCCCCCCC-
Q 004950 156 VLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHS- 234 (722)
Q Consensus 156 ~ll~~i~~l~~~l~l~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~~i~~~~- 234 (722)
+.+..+..++++.++..+.+.+++.+.+ ++.+|+.+||++|+|++++.++.++. ++.+++++|..|++ ++.++
T Consensus 461 d~L~~lt~l~~~~~~~i~~~~l~~~~~~-~~~sW~~lea~~~aigaIag~~~~~~---E~~~Lp~vi~~Ll~--L~e~~~ 534 (1073)
T 3gjx_A 461 ETLVYLTHLDYVDTEIIMTKKLQNQVNG-TEWSWKNLNTLCWAIGSISGAMHEED---EKRFLVTVIKDLLG--LCEQKR 534 (1073)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHTS-CCCCHHHHHHHHHHHHHTTTSSCHHH---HHHHHHHHHHHHHH--HHHHSC
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhcC-CCCCHHHHhHHHHHHHHHHCcCCccc---ccchHHHHHHHHhc--cccccc
Confidence 7877777889998888888888876653 35689999999999999988877531 34789999999986 34322
Q ss_pred ----hhHHHHHHHHHHHhhHHHHhhcCCChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhhccch--------HH
Q 004950 235 ----NRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLV--------PF 302 (722)
Q Consensus 235 ----hp~V~~~~~e~i~RY~~~~~~~p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L~--------~~ 302 (722)
.+.|+.+.++++|||++|+..||+||++++++++ .+++.+++.|+.+||.+|.++|++|+.+++ ||
T Consensus 535 ~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~--~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~ 612 (1073)
T 3gjx_A 535 GKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLF--EFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPF 612 (1073)
T ss_dssp SHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHH--HHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCH
T ss_pred ccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchH
Confidence 4568888899999999999999999999999999 899999999999999999999999999984 59
Q ss_pred HHHHHHHhhhhhhhhccCCcccccCCCCchhhHHHHHHHHHHccCCCChhhhHHHHHHhHHHHHHHHHHHHHhhhccCC-
Q 004950 303 IENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNP- 381 (722)
Q Consensus 303 ~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~L~Eaig~Lis~~~~~~e~~~~~l~~ll~pl~~~l~~~~~~~~~~~~- 381 (722)
+++|++.+..+.. .+++++...+|||+|++++..+ +...+.++++.+++|..++++++++++....+
T Consensus 613 i~~il~~~~~~~~-----------~l~~~~~~~lyeav~~vi~~~p-~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~ 680 (1073)
T 3gjx_A 613 IDEILNNINTIIC-----------DLQPQQVHTFYEAVGYMIGAQT-DQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDI 680 (1073)
T ss_dssp HHHHHTSHHHHHT-----------TCCHHHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHH-----------hcCHHHHHHHHHHHHHHHHhCC-CcchHHHHHHHHHHHHHHHHHHHHHHhhcCchh
Confidence 9999998887642 2357788999999999999953 33458999999999999999999876432111
Q ss_pred chhhhHHHhHHHHHHHHHHhhhccCCCccCCCcchHHHHHHHHHHHHHHHHhcCCC----------C---hhHHhHHHHH
Q 004950 382 EESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPK----------V---EPLRCKVTSF 448 (722)
Q Consensus 382 ~~~~~~~~~~~~~i~~l~~lakgf~~~~~~~~~~~~~~~~~~~~~vi~~~l~~~~~----------~---~~Vre~~~~~ 448 (722)
-.+...+-++.+++.+..+++++... ++...+..+++-++.+-..+.+ . .....+.+++
T Consensus 681 ~~d~~~i~~l~~il~~n~~v~~~~g~--------~f~~~~~~i~~~~l~~y~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ 752 (1073)
T 3gjx_A 681 LKDPETVKQLGSILKTNVRACKAVGH--------PFVIQLGRIYLDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRT 752 (1073)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHHHHCG--------GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGSSHHHHHHHH
T ss_pred ccChHHHHHHHHHHhhhHHHHhhcch--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHH
Confidence 01222234578888888888877763 3444444454444433222111 0 1122344555
Q ss_pred HH----HHHHh-cCcc------cccchHHHHHHHHhcCCh----hhHHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHH
Q 004950 449 IH----RMVDT-LGAS------VFPYLPKALEQLLAESEP----KEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRI 513 (722)
Q Consensus 449 ~~----r~v~~-lg~~------v~p~lp~li~~ll~~~~~----~~~~~fL~~~~qli~~f~~~~~~~l~~ll~~l~~~v 513 (722)
.+ |++.+ .+.. ...++|++++.++..+.. .+.+++|++.+.+|.|+|..+.+.+..++..+++-+
T Consensus 753 ik~eil~l~~~~i~~~~~~~~v~~~~i~pl~~~vl~dY~~~~p~~r~~evL~l~s~iv~k~~~~~~~~~~~il~~vf~~T 832 (1073)
T 3gjx_A 753 VKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECT 832 (1073)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHTSHHHHHHTHHHHHHSCGGGCCTHHHHHHHHHHHHHGGGTGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Confidence 55 34443 3433 346788888888876532 466999999999999999988888888888898999
Q ss_pred HhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeeecCCCCcCChHHHHHHHHHhhcCCCchHHHHHHHH
Q 004950 514 FNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQ 593 (722)
Q Consensus 514 ~~~l~~~~~~~~p~~~~d~~r~~~~l~r~y~~fl~~i~~~~~~~vl~s~~~~~~l~~~l~~l~~~~~~~~d~~~~k~a~~ 593 (722)
+.+++.. -.+.|| .+.+||.|+.++.++-...++.-+ .+.+..++.+++- |..|.+..+..+++.
T Consensus 833 l~mi~~~-----f~~~Pe-------~r~~ff~ll~~~~~~~f~~l~~l~--~~~~~~~i~~i~w-a~kh~~r~i~~~~l~ 897 (1073)
T 3gjx_A 833 LNMINKD-----FEEYPE-------HRTNFFLLLQAVNSHCFPAFLAIP--PAQFKLVLDSIIW-AFKHTMRNVADTGLQ 897 (1073)
T ss_dssp HHHHSSC-----SSSCHH-------HHHHHHHHHHHHHHHCGGGTTTSC--HHHHHHHHHHHHH-HHTCSSHHHHHHHHH
T ss_pred HHHHhCC-----cccCcH-------HHHHHHHHHHHHHHHHhHHHHcCC--HHHHHHHHHHHHH-HcCCCChhHHHHHHH
Confidence 9999852 234444 899999999999998765444333 2347778887774 678888888889999
Q ss_pred HHHHHHHHhhCCCCCCCCchhHHHHHHHhhhhhh--hhhcccCCCCCCCchhHHHHHHHHHHHHHHHHHHh---------
Q 004950 594 IFIRLIKDWCARPFVEEKVPGFQSFMIEAFAMNC--CLYSVLDKSFEFGDANTLVLFGEIVLAQKVMYEKF--------- 662 (722)
Q Consensus 594 ~l~~li~~~~~~~~~~~~~~gf~~fl~~~~~~~~--~~~~~~~~~F~~~Da~~~~~l~eia~~l~~l~~~~--------- 662 (722)
++.+++......+ +...+|.-+.+..++ .|.+.. .++. ...+..-+.+|..|....
T Consensus 898 ~~~~ll~~~~~~~------~~~~~F~~~~~~~~~~~i~~v~t-d~~h------~~~f~~q~~il~~l~~~~~~~~i~~~l 964 (1073)
T 3gjx_A 898 ILFTLLQNVAQEE------AAAQSFYQTYFCDILQHIFSVVT-DTSH------TAGLTMHASILAYMFNLVEEGKISTPL 964 (1073)
T ss_dssp HHHHHHHHHTTCH------HHHHHHHHHHHHHHHHHHHHHHT-CTTC------GGGHHHHHHHHHHHHHHHTTTCCSCSS
T ss_pred HHHHHHHHhhcCh------HHHHHHHHHHHHHHHHHHHHHHh-CchH------hhhhhHHHHHHHHHHHHHHcCCccccc
Confidence 9999997765321 112222222222211 122221 1211 122233344444443221
Q ss_pred -------hh----HHHHHHHhccCCCCCCCHHHHHHHHHHhccC--CchHHHHHHHHHHHHHhh
Q 004950 663 -------GN----DFLVHFVTKGFPSAHCPPDLAEQYCQKLQGN--DIKALKSFYQSLIEKLRV 713 (722)
Q Consensus 663 -------g~----e~~~~l~~~~lP~~~~~~~~~~~f~~~l~~~--~~k~~k~~~~~f~~~~r~ 713 (722)
.. +|+..+....||. +++++...|++.+-+. |..+||.+++||..+.|.
T Consensus 965 ~~~~~~~n~~~~~~~~~~~l~~~fp~--~~~~qi~~fv~~l~~~~~d~~~f~~~lrDFli~~ke 1026 (1073)
T 3gjx_A 965 NPGNPVNNQMFIQDYVANLLKSAFPH--LQDAQVKLFVTGLFSLNQDIPAFKEHLRDFLVQIKE 1026 (1073)
T ss_dssp SCTTTTCHHHHHHHHHHHHHHHHCTT--SCHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHTS
T ss_pred cccCCCccHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 11 2333444568997 8899999999999764 679999999999999886
No 7
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=100.00 E-value=1.9e-38 Score=392.96 Aligned_cols=671 Identities=12% Similarity=0.122 Sum_probs=410.6
Q ss_pred CChhhHHHHHHhcC---hhhhhcccc-------ccchhhHHHHHHHHHHHHHHHHHHHhhhcChhhHHHHHHHHHHHHHH
Q 004950 1 MDPQSKLNLLQTLQ---ISRVFGLVS-------EDGESELVSKVAALLTGYAMEVLDCVKRLNAENANEASKKLLNEVLP 70 (722)
Q Consensus 1 M~p~~Kl~li~~L~---l~~~l~~~~-------~~~D~e~~~~~a~L~~~~g~el~~~~~~~~~~~~~~~~~~~l~~~~p 70 (722)
|+|.+|..+++.|+ +..++..+. .++|.||.+++++|++++|++++.++.+... ......+..+++
T Consensus 279 ~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~----~~~~~~l~~~l~ 354 (1204)
T 3a6p_A 279 GKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSD----VETPSNFGKYLE 354 (1204)
T ss_dssp SCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSS----CCCCTTHHHHHH
T ss_pred CChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhcccc----ccChhHHHHHHH
Confidence 56889999998886 345555431 4568999999999999999998887653210 011235679999
Q ss_pred HHHhhhccCCccchhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHH---HHHcccCcccccC-CccC---CCCChhH
Q 004950 71 SVFYVMQNCEVDTTFSIVQFLSGYVATMKSLSPLKEEQRLHAGQILEVI---LTQIRYDPMYRNN-LDVL---DKIGIEE 143 (722)
Q Consensus 71 lvL~~~~~~d~~~~~~~~~F~~~~l~~lk~~~~l~~~~~~~l~~Ll~~l---i~km~yp~~~~~~-~d~~---~~~~~ed 143 (722)
++++|++|+|.+++..+++||+.++...+ ....+.+.+++.+|++++ ++||+||++++.. .+|. +++++|+
T Consensus 355 ~lL~~t~~~~~~vs~~~l~fW~~ll~~~~--~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~ 432 (1204)
T 3a6p_A 355 SFLAFTTHPSQFLRSSTQMTWGALFRHEI--LSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDF 432 (1204)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHHHHSCTT--TTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHH
T ss_pred HHHHHHhCccHHhHHHHHHHHHHHHhccc--ccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHH
Confidence 99999999999999999999999885532 123466889999999999 9999999876410 1232 1122344
Q ss_pred HHHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHhcCC----------------------CCCChhhHHHHHHHHHH
Q 004950 144 EDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFS----------------------ADRNVEEVEAALTLLYA 201 (722)
Q Consensus 144 e~~F~e~Rk~l~~ll~~i~~l~~~l~l~~i~~~l~~~l~~~----------------------~~~~W~~~EaaL~~l~~ 201 (722)
++.|.+|||+++++++.|+.+.|+..+.++.+.+.+.+.++ .+.+|+..|+..+.+.+
T Consensus 433 ~~~f~~~Rk~~~d~l~~i~~v~p~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~lea 512 (1204)
T 3a6p_A 433 NAFFNSSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLES 512 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999988888886665421 12469999999999999
Q ss_pred hcccCchhhhhcc--cccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhhcCCChHHHHHHhccccCCCC----
Q 004950 202 LGESMSEEAMRTG--AGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHH---- 275 (722)
Q Consensus 202 ~gE~i~~~~~~~~--~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~~p~~L~~vL~~~l~~~Gl~~---- 275 (722)
+++++..-..++. ...+++++..+++ + +..||.++.+.+.+++||++|+.+||++++++|+.++ .|+.+
T Consensus 513 v~~~~~~~~e~~~l~~~~~~~Ll~~ll~--~-~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll--~~l~~~~~~ 587 (1204)
T 3a6p_A 513 VITQMFRTLNREEIPVNDGIELLQMVLN--F-DTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLF--SSVTFETVE 587 (1204)
T ss_dssp HHHHHHHHSCTTCCCHHHHHHHHHHHHH--C-CCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHH--HHHHCCTTC
T ss_pred HHHHHhcccccccccHHHHHHHHHHHHh--C-CCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH--HhhccCCcc
Confidence 9998832110111 1347778888775 2 2368999999999999999999999999999999998 34433
Q ss_pred --------CCchhHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhhhhhhccCCcccccCCCCchhhHHHHHHHHHHccC
Q 004950 276 --------PNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGME 347 (722)
Q Consensus 276 --------~~~~V~~ra~ylf~r~~k~~r~~L~~~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~L~Eaig~Lis~~ 347 (722)
.+++||++||++|.|||++|+.+|.||+++|++.++.++.... .++..++..||||++.+....
T Consensus 588 ~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~~--------~l~~~e~~~L~eal~~ia~~~ 659 (1204)
T 3a6p_A 588 ESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNEL--------LLTQMEKCALMEALVLISNQF 659 (1204)
T ss_dssp STTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHSTT--------TSCHHHHHHHHHHHHHHHGGG
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCcc--------cccHHHHHHHHHHHHHHhccC
Confidence 3458999999999999999999999999999999999885221 024678999999999995443
Q ss_pred CCChhhhHHHHHHhHHHHHHHHHH-----HHHhhh---------------ccCCchhhhHHHhHHHHH----HHHHHh--
Q 004950 348 DVPPEKQSDYLSSLLTPLCQQVQT-----MLLDAK---------------MLNPEESTAKFANIQQII----MAINAL-- 401 (722)
Q Consensus 348 ~~~~e~~~~~l~~ll~pl~~~l~~-----~~~~~~---------------~~~~~~~~~~~~~~~~~i----~~l~~l-- 401 (722)
+ +.+++..+++.++.|+++++++ .++... ...|++... -..+.+.+ ..+.++
T Consensus 660 ~-~~~~~~~~l~~ll~P~~~~w~~~~~~~~~s~~~~f~~~~G~~~~~~~~~~~d~~~~~-r~~l~~~~~~l~~~l~r~~~ 737 (1204)
T 3a6p_A 660 K-NYERQKVFLEELMAPVASIWLSQDMHRVLSDVDAFIAYVGTDQKSCDPGLEDPCGLN-RARMSFCVYSILGVVKRTCW 737 (1204)
T ss_dssp C-CHHHHHHHHHHHHHHHHHHHSCHHHHHHHHCHHHHHHHHTSSCC--CTTCCTHHHHH-HHHHHHHHHHHHHHHHHCCC
T ss_pred C-CHHHHHHHHHHHHHHHHHHHccHHHHHhhcCHHHHHHHhCCCCCcccccccchhhhh-HHHHHHHHHHHHHHHHHhcC
Confidence 2 5677888899999999999984 222211 001211110 01133333 333332
Q ss_pred -------hhc-cCCCc----cCCCcchHHHHHHHHHHHHHHHHhcCC--CChhH--------------------------
Q 004950 402 -------SKG-FNERL----VTSSRPAIGLMFKQTLDVLLQILVVFP--KVEPL-------------------------- 441 (722)
Q Consensus 402 -------akg-f~~~~----~~~~~~~~~~~~~~~~~vi~~~l~~~~--~~~~V-------------------------- 441 (722)
.+| |-... .+..+.++...+..++|.+++++..++ .++++
T Consensus 738 ~~~~~~~~~~gf~~~~~~~~~p~~~~p~~~~i~~ilP~ll~Ll~~~~~l~~p~~~~~l~~~~~~~~~~~~~er~~~~g~~ 817 (1204)
T 3a6p_A 738 PTDLEEAKAGGFVVGYTSSGNPIFRNPCTEQILKLLDNLLALIRTHNTLYAPEMLAKMAEPFTKALDMLDAEKSAILGLP 817 (1204)
T ss_dssp CSSHHHHHHTTCEEEECSSCCEEECCTTHHHHHHHHHHHHHHHHHHHHTTSHHHHTTSCGGGTTTTSCCHHHHHHHTCCC
T ss_pred CCChhhhhcCCceeccCCCCCccccCchHHHHHHHhHHHHHHHHHHHHhcCcHhhhhcCHHHHHHHhccHHHHHHhcCCC
Confidence 122 43211 111234678889999998888877654 33333
Q ss_pred --------------------------HhHHHHHHHHHHHhcCccc--ccchHHH-HHHHHhcCC---hhhHHHHHHHH-H
Q 004950 442 --------------------------RCKVTSFIHRMVDTLGASV--FPYLPKA-LEQLLAESE---PKEMAGFLVLL-N 488 (722)
Q Consensus 442 --------------------------re~~~~~~~r~v~~lg~~v--~p~lp~l-i~~ll~~~~---~~~~~~fL~~~-~ 488 (722)
||.+...+..++..+|..+ .|-++.. ...++...+ ..++...+..+ .
T Consensus 818 ~~~~~~~~~~~~~~~~~~l~~~~~~~re~~y~~lg~~~~~l~~~fy~~~~l~~~l~~~~f~~l~~~~~~~l~~li~~~~~ 897 (1204)
T 3a6p_A 818 QPLLELNDSPVFKTVLERMQRFFSTLYENCFHILGKAGPSMQQDFYTVEDLATQLLSSAFVNLNNIPDYRLRPMLRVFVK 897 (1204)
T ss_dssp CCCCCTTCCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTTSTTHHHHHHHHTTSSTTTSCHHHHHHHHHHTHH
T ss_pred cccccccccCCCcCcHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCcchHHHHHHHHHhcchhccHHHHHHHHHHHHH
Confidence 4444444444444444443 2333322 223333222 22333222111 1
Q ss_pred HHHHHHhhhHH-HHHHhhhHHHHHHHHhhcc-------CCCC------CCCCCCCCHHHH---HHHHHHHHHHHHHHHHH
Q 004950 489 QLICKFNTLVH-DILDEVFPAIAGRIFNIIP-------RDAF------PSGPGTNTEEIR---EVQELQRTLYTFLHVIA 551 (722)
Q Consensus 489 qli~~f~~~~~-~~l~~ll~~l~~~v~~~l~-------~~~~------~~~p~~~~d~~r---~~~~l~r~y~~fl~~i~ 551 (722)
-++.-+..+++ .++..+|+|++.++...|. +... ..+.++.++++. -.++|-|.|..++..++
T Consensus 898 p~i~~CP~~~~~~~l~plL~~lf~~~~~~L~~~W~~i~~~~~~~~~~~~~~~~~~~~E~~~e~llr~lTr~~~~ll~~~~ 977 (1204)
T 3a6p_A 898 PLVLFCPPEHYEALVSPILGPLFTYLHMRLSQKWQVINQRSLLCGEDEAADENPESQEMLEEQLVRMLTREVMDLITVCC 977 (1204)
T ss_dssp HHHHTCCGGGTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12211121211 1222344444444333332 1110 001123344433 45677888888887654
Q ss_pred hcCCCe---------------------------------eecCCCCcCChHHHHHHHHHhhcCCCchH-HHHHHHHHHHH
Q 004950 552 THDLSS---------------------------------VFLSPKSRGYLDPIMQLLLYTSCNHKDYL-VRKACVQIFIR 597 (722)
Q Consensus 552 ~~~~~~---------------------------------vl~s~~~~~~l~~~l~~l~~~~~~~~d~~-~~k~a~~~l~~ 597 (722)
...-.+ .+++ +...+..++..+.+ +...+|+. ....+..+...
T Consensus 978 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~l~~~~~-~l~~~D~~~~~~~~~~~~~~ 1054 (1204)
T 3a6p_A 978 VSKKGADHSSAPPADGDDEEMMATEVTPSAMAELTDLGKCLMK--HEDVCTALLITAFN-SLAWKDTLSCQRTTSQLCWP 1054 (1204)
T ss_dssp BC------------------------------CBCHHHHHHHS--SHHHHHHHHHHHHH-HTTSSCHHHHHHHHHHTHHH
T ss_pred cCCCCCCccccccccccccccccccccccchhhcchHHHHHhc--CHHHHHHHHHHHHH-HhcccCcHHHHHHHHHHHHH
Confidence 211000 0000 11113334433333 44566776 54455555555
Q ss_pred HHHHhhCCCCCCCCchhHHHHHHHhhhhhhhhhcccCCCCCCCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cC
Q 004950 598 LIKDWCARPFVEEKVPGFQSFMIEAFAMNCCLYSVLDKSFEFGDANTLVLFGEIVLAQKVMYEKFGNDFLVHFVTK--GF 675 (722)
Q Consensus 598 li~~~~~~~~~~~~~~gf~~fl~~~~~~~~~~~~~~~~~F~~~Da~~~~~l~eia~~l~~l~~~~g~e~~~~l~~~--~l 675 (722)
++.....+ .....++.++...++.. |.. .+|+ .|++ .|++.++..++..+++.+. |.+.. .+
T Consensus 1055 ~v~~~~~~----~~~~~~~~~l~~~vl~~-l~~----~~~~-~~~~-----~~l~~l~~~i~~~~~~~~~-~~~~vl~~l 1118 (1204)
T 3a6p_A 1055 LLKQVLSG----TLLADAVTWLFTSVLKG-LQM----HGQH-DGCM-----ASLVHLAFQIYEALRPRYL-EIRAVMEQI 1118 (1204)
T ss_dssp HHTTSCSS----CCCHHHHHHHHHHHHHH-HHH----SCSC-HHHH-----HHHHHHHHHHHHHSTTTCS-THHHHHTTS
T ss_pred HHHHHhcc----cCchHHHHHHHHHHHHH-HHh----cCCC-chhH-----HHHHHHHHHHHHHhCCCCc-cHHHHHHhC
Confidence 55444322 12245588888876554 221 1232 3444 7999999999999888765 66653 88
Q ss_pred CCCCCCHHHHHHHHHHhcc-C----CchHHHHHHHHHHHHHhh
Q 004950 676 PSAHCPPDLAEQYCQKLQG-N----DIKALKSFYQSLIEKLRV 713 (722)
Q Consensus 676 P~~~~~~~~~~~f~~~l~~-~----~~k~~k~~~~~f~~~~r~ 713 (722)
|+ ++++..++|.+++.. . +.|+-|..+++|+..+||
T Consensus 1119 P~--i~~~~~~~f~~~l~~~~~~~~~~k~qr~~~~~ll~~~~g 1159 (1204)
T 3a6p_A 1119 PE--IQKDSLDQFDCKLLNPSLQKVADKRRKDQFKRLIAGCIG 1159 (1204)
T ss_dssp SS--CCHHHHHHHHHHSSCC-----------------------
T ss_pred CC--CCHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHhcC
Confidence 88 889999999999964 2 368889999999999999
No 8
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.94 E-value=9.8e-24 Score=254.21 Aligned_cols=475 Identities=16% Similarity=0.216 Sum_probs=340.0
Q ss_pred HHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHcccCcccccCCccCCCC---C
Q 004950 64 LLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLSPLKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKI---G 140 (722)
Q Consensus 64 ~l~~~~plvL~~~~~~d~~~~~~~~~F~~~~l~~lk~~~~l~~~~~~~l~~Ll~~li~km~yp~~~~~~~d~~~~~---~ 140 (722)
++.+++++++.++.++|+++...+++||..+.+. ........+++.+++.+++++|.|++++. .|.+++ |
T Consensus 253 ~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~----~~~~~~~~~~~~~l~p~ll~~l~~~e~d~---~~~~~d~~ed 325 (852)
T 4fdd_A 253 HMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQ----PICKDVLVRHLPKLIPVLVNGMKYSDIDI---ILLKGDVEGG 325 (852)
T ss_dssp GHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTS----TTHHHHHTTTHHHHHHHHHHHTSCCHHHH---HHHHC-----
T ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcc----hhHHHHHHHHHHHHHHHHHHHcCCcHhHH---HHhcCCcccc
Confidence 4567899999999998888999999999987642 11233457789999999999999987543 332111 1
Q ss_pred hhHHHHH--HHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhcccCchhhhhcccccH
Q 004950 141 IEEEDRM--VEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHL 218 (722)
Q Consensus 141 ~ede~~F--~e~Rk~l~~ll~~i~~l~~~l~l~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l 218 (722)
++|++.+ ...|+.....++.++...++.++..+.+.+.+.+.+ .+|+..|+|+.+++.++++++.. . ...+
T Consensus 326 ~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~---~~~~~R~aa~~alg~i~~~~~~~-~---~~~l 398 (852)
T 4fdd_A 326 SGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFH---HEWVVKESGILVLGAIAEGCMQG-M---IPYL 398 (852)
T ss_dssp -------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTC---SSHHHHHHHHHHHHHTTTTTHHH-H---GGGH
T ss_pred cccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHhcchHH-H---HHHH
Confidence 1122222 236888888888877766677777777888877754 58999999999999999998642 1 2567
Q ss_pred HhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhh--cCCChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhh
Q 004950 219 SELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQE--HTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLK 296 (722)
Q Consensus 219 ~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~--~p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r 296 (722)
+++++.++. ...++||.||.++++++++|++|+.. +..|++.+++.++ .++.+++++||.+|+.++..||+.+.
T Consensus 399 ~~~l~~l~~--~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~--~~L~d~~~~vr~~a~~aL~~l~~~~~ 474 (852)
T 4fdd_A 399 PELIPHLIQ--CLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELL--KRILDSNKRVQEAACSAFATLEEEAC 474 (852)
T ss_dssp HHHHHHHHH--HTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHH--HHHTCSSHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH--HHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence 888888886 35678999999999999999999975 5689999999999 78888899999999999999999999
Q ss_pred ccchHHHHHHHHHhhhhhhhhccCCcccccCCCCchhhHHHHHHHHHHccCCCChhhhHHHHHHhHHHHHHHHHHHHHhh
Q 004950 297 AKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDA 376 (722)
Q Consensus 297 ~~L~~~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~L~Eaig~Lis~~~~~~e~~~~~l~~ll~pl~~~l~~~~~~~ 376 (722)
..+.||+++++..+..++... .......+++++|.++...+ +.-.+.+|++.+++++++.++......
T Consensus 475 ~~l~~~l~~ll~~L~~~l~~~-----------~~~~~~~~~~ai~~l~~~~~-~~~~~~~~~~~l~p~l~~~~~~l~d~~ 542 (852)
T 4fdd_A 475 TELVPYLAYILDTLVFAFSKY-----------QHKNLLILYDAIGTLADSVG-HHLNKPEYIQMLMPPLIQKWNMLKDED 542 (852)
T ss_dssp GGGGGGHHHHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHHG-GGGCCHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HhhHhHHHHHHHHHHHHHHHh-----------ChHHHHHHHHHHHHHHHHhh-hhhccHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999998887421 12234568899999987654 222345677777777775543211000
Q ss_pred h--------------ccCCc--hhhhHH------------------------------HhHHHHHHHHHHhhhccCCCcc
Q 004950 377 K--------------MLNPE--ESTAKF------------------------------ANIQQIIMAINALSKGFNERLV 410 (722)
Q Consensus 377 ~--------------~~~~~--~~~~~~------------------------------~~~~~~i~~l~~lakgf~~~~~ 410 (722)
. .-+.. .....+ .-...++.++|.+++++..
T Consensus 543 ~~~~~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~--- 619 (852)
T 4fdd_A 543 KDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGG--- 619 (852)
T ss_dssp TTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGG---
T ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhH---
Confidence 0 00000 000000 0012233444444444431
Q ss_pred CCCcchHHHHH--HHHHHHHHHHHhcCCCChhHHhHHHHHHHHHHHhcCcccccchHHHHHHHHhcCCh---hhHHHHHH
Q 004950 411 TSSRPAIGLMF--KQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEP---KEMAGFLV 485 (722)
Q Consensus 411 ~~~~~~~~~~~--~~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~lg~~v~p~lp~li~~ll~~~~~---~~~~~fL~ 485 (722)
.....+ .++++.+..+++ .....||+.+..+++.++..+|..+.||++.++..+....+. .--...+|
T Consensus 620 -----~~~~~~~~~~~~~~l~~~l~--~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~ 692 (852)
T 4fdd_A 620 -----NIEQLVARSNILTLMYQCMQ--DKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATW 692 (852)
T ss_dssp -----GGHHHHHTCCHHHHHHHHTT--CSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHH
T ss_pred -----hHHHHhcCCcHHHHHHHHhC--CCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchHHHHHHHH
Confidence 122233 356777777765 456899999999999999999999999999999988887644 22357889
Q ss_pred HHHHHHHHHhhhHHHHHHhhhHHHHHHHHhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeeecCCCCc
Q 004950 486 LLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSR 565 (722)
Q Consensus 486 ~~~qli~~f~~~~~~~l~~ll~~l~~~v~~~l~~~~~~~~p~~~~d~~r~~~~l~r~y~~fl~~i~~~~~~~vl~s~~~~ 565 (722)
.+|.++...+.++.|.+..+++ .++.+++. |. .+. .++++-...+..+...++.. ..
T Consensus 693 alg~i~~~~~~~~~p~~~~il~----~L~~~l~~------~~-~~~------~~~~~a~~~igrl~~~~~~~------~~ 749 (852)
T 4fdd_A 693 AIGEISIQMGIEMQPYIPMVLH----QLVEIINR------PN-TPK------TLLENTAITIGRLGYVCPQE------VA 749 (852)
T ss_dssp HHHHHHHHHGGGGGGGTHHHHH----HHHHHHTC------SS-CCH------HHHHHHHHHHHHHHHHCHHH------HG
T ss_pred HHHHHHHHhhHhHHHHHHHHHH----HHHHHhCC------CC-CCc------hHHHHHHHHHHHHHHhCHHH------hC
Confidence 9999999998877776655444 55777763 22 122 37788888888888776532 23
Q ss_pred CChHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 004950 566 GYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKD 601 (722)
Q Consensus 566 ~~l~~~l~~l~~~~~~~~d~~~~k~a~~~l~~li~~ 601 (722)
|+++.++..|+.......|...+.+|+..|+.++..
T Consensus 750 ~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~ 785 (852)
T 4fdd_A 750 PMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISV 785 (852)
T ss_dssp GGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh
Confidence 678999999998665778999999999999999966
No 9
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.92 E-value=4.1e-21 Score=230.78 Aligned_cols=485 Identities=11% Similarity=0.092 Sum_probs=323.6
Q ss_pred HHH-HHHHHHHhhhccCCccchhhHHHHHHHHHHHhccC----------CC-ChHHHHHHHHHHHHHHHHHcccCccccc
Q 004950 64 LLN-EVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSL----------SP-LKEEQRLHAGQILEVILTQIRYDPMYRN 131 (722)
Q Consensus 64 ~l~-~~~plvL~~~~~~d~~~~~~~~~F~~~~l~~lk~~----------~~-l~~~~~~~l~~Ll~~li~km~yp~~~~~ 131 (722)
++. .++++++..+.+.|.++...+++||..+++..... +. .....++++..++..++.+|++++++++
T Consensus 262 ~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~ 341 (861)
T 2bpt_A 262 YMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPE 341 (861)
T ss_dssp HHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-C
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 455 78888888888888899999999999988764210 00 1113456788999999999988654321
Q ss_pred CCccCCCCChhHHHHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhcccCchhhh
Q 004950 132 NLDVLDKIGIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAM 211 (722)
Q Consensus 132 ~~d~~~~~~~ede~~F~e~Rk~l~~ll~~i~~l~~~l~l~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~~gE~i~~~~~ 211 (722)
.++ -..|+...+.+..++...++.++..+.+.+.+.+++ .+|+..|+|+++++.+++++.++..
T Consensus 342 ----d~~---------~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~---~~~~~r~~a~~~l~~i~~~~~~~~~ 405 (861)
T 2bpt_A 342 ----DDD---------WNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITA---DNWRNREAAVMAFGSIMDGPDKVQR 405 (861)
T ss_dssp ----CCC---------CHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTC---SSHHHHHHHHHHHHHTSSSSCHHHH
T ss_pred ----ccc---------CcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCC---CChhHHHHHHHHHHHHHcCCCHHHH
Confidence 111 147888888888777654466666677777777654 6799999999999999998864322
Q ss_pred hcccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhhc---CCChHHHHHHhccccCCCCCCchhHHHHHHHH
Q 004950 212 RTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEH---TQYIPVVLAAFLDERGIHHPNVHVSRRASYLF 288 (722)
Q Consensus 212 ~~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~~---p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf 288 (722)
...++++++.++.. ..++||.||.+++++++||++|+..+ +++++.+++.++ .++.++ ++||.+||+++
T Consensus 406 ---~~~l~~il~~l~~~--l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~--~~l~~~-~~v~~~a~~al 477 (861)
T 2bpt_A 406 ---TYYVHQALPSILNL--MNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACL--IGLQDH-PKVATNCSWTI 477 (861)
T ss_dssp ---HHHHHHHHHHHHHG--GGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHH--HHHTSC-HHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHH--HHhccC-hHHHHHHHHHH
Confidence 24577788887763 45679999999999999999999864 689999999999 677665 89999999999
Q ss_pred HHHHHHhh----ccchHHHHHHHHHhhhhhhhhccCCcccccCCCCchhhHHHHHHHHHHccCCCChhhhHHHHHHhHHH
Q 004950 289 MRVVKLLK----AKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTP 364 (722)
Q Consensus 289 ~r~~k~~r----~~L~~~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~L~Eaig~Lis~~~~~~e~~~~~l~~ll~p 364 (722)
..+|+.|. ..+.||++.++..+..++... + ...+-+...++++|.++...+ ++...++..++++
T Consensus 478 ~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~--------d-~~~~vr~~a~~al~~l~~~~~---~~~~~~~~~l~~~ 545 (861)
T 2bpt_A 478 INLVEQLAEATPSPIYNFYPALVDGLIGAANRI--------D-NEFNARASAFSALTTMVEYAT---DTVAETSASISTF 545 (861)
T ss_dssp HHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCS--------C-CGGGHHHHHHHHHHHHHHHCC---GGGHHHHHHHHHH
T ss_pred HHHHHhcccccchhhHHHHHHHHHHHHHHHhCc--------C-cchHHHHHHHHHHHHHHHHcc---hhhHHHHHHHHHH
Confidence 99999986 678899999999998876411 0 012336789999999999853 4577889999999
Q ss_pred HHHHHHHHHHhhhccCCchhhhHHH-hHHHHHHHHHHhhhccCCCccCCCcchHHHHHHHHHHHHHHHHhcCCCChhHHh
Q 004950 365 LCQQVQTMLLDAKMLNPEESTAKFA-NIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRC 443 (722)
Q Consensus 365 l~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~i~~l~~lakgf~~~~~~~~~~~~~~~~~~~~~vi~~~l~~~~~~~~Vre 443 (722)
+++.+.+.+........+.+..... ....++.+++.+.++++.. +.....++++.+..+++....+ .+|+
T Consensus 546 l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~--------~~~~~~~l~~~l~~~l~~~~~~-~v~~ 616 (861)
T 2bpt_A 546 VMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSS--------VEPVADMLMGLFFRLLEKKDSA-FIED 616 (861)
T ss_dssp HHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGG--------TGGGHHHHHHHHHHHHHSTTGG-GTHH
T ss_pred HHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhh--------hHHHHHHHHHHHHHHHccCCCC-cHHH
Confidence 9999887632110000000001111 1346777788777776531 1223345555555555532211 5666
Q ss_pred HHHHHHHHHHHhcCcccccchHHHHHHHHhcCC----------------------------------------------h
Q 004950 444 KVTSFIHRMVDTLGASVFPYLPKALEQLLAESE----------------------------------------------P 477 (722)
Q Consensus 444 ~~~~~~~r~v~~lg~~v~p~lp~li~~ll~~~~----------------------------------------------~ 477 (722)
.+..++..++..+|..+.||+|.++..++...+ .
T Consensus 617 ~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 696 (861)
T 2bpt_A 617 DVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARR 696 (861)
T ss_dssp HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCT
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccH
Confidence 666666666666666666666665554443210 1
Q ss_pred hhHHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCe
Q 004950 478 KEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSS 557 (722)
Q Consensus 478 ~~~~~fL~~~~qli~~f~~~~~~~l~~ll~~l~~~v~~~l~~~~~~~~p~~~~d~~r~~~~l~r~y~~fl~~i~~~~~~~ 557 (722)
..-..++..++.++..+++++.+.+..+++++ +..++... ++ .++|.......++++++..+..++..- ..
T Consensus 697 ~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l----~~~~~~~~---~~-~d~d~~~~~~~vr~~~l~~~~~i~~~l-~~ 767 (861)
T 2bpt_A 697 ELKPAVLSVFGDIASNIGADFIPYLNDIMALC----VAAQNTKP---EN-GTLEALDYQIKVLEAVLDAYVGIVAGL-HD 767 (861)
T ss_dssp THHHHHHHHHHHHHHHHGGGGHHHHHHHHHHH----HHHHTCCC---SS-SSHHHHHHHHHHHHHHHHHHHHHHHHT-TT
T ss_pred hhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHH----HHHHhcCC---CC-CChHHHHHHHHHHHHHHHHHHHHHHHH-cc
Confidence 12234556667777777776777666666555 33333211 12 122322234568899999999888542 21
Q ss_pred eecCCCCcCChHHHHHHHHHhhcCC--C-chHHHHHHHHHHHHHHHHhhC
Q 004950 558 VFLSPKSRGYLDPIMQLLLYTSCNH--K-DYLVRKACVQIFIRLIKDWCA 604 (722)
Q Consensus 558 vl~s~~~~~~l~~~l~~l~~~~~~~--~-d~~~~k~a~~~l~~li~~~~~ 604 (722)
. +....++++.++..+.....+. . +..++++|+..+..++..|++
T Consensus 768 ~--~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g 815 (861)
T 2bpt_A 768 K--PEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPD 815 (861)
T ss_dssp C--HHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTT
T ss_pred C--HHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCC
Confidence 1 1234456777777666543332 2 778999999999999998843
No 10
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.91 E-value=2.1e-20 Score=225.04 Aligned_cols=494 Identities=10% Similarity=0.087 Sum_probs=333.0
Q ss_pred HHH-HHHHHHHhhhccCCccchhhHHHHHHHHHHHhcc-------------C--CCChHHHHHHHHHHHHHHHHHcccCc
Q 004950 64 LLN-EVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKS-------------L--SPLKEEQRLHAGQILEVILTQIRYDP 127 (722)
Q Consensus 64 ~l~-~~~plvL~~~~~~d~~~~~~~~~F~~~~l~~lk~-------------~--~~l~~~~~~~l~~Ll~~li~km~yp~ 127 (722)
++. .++|+++.++.++++++...+++||..+.+.... . .......++++.+++..+++.|...+
T Consensus 255 ~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~ 334 (876)
T 1qgr_A 255 YMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQD 334 (876)
T ss_dssp HHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhccc
Confidence 345 7889999988888888888999999998865310 0 11223345678899999999997543
Q ss_pred ccccCCccCCCCChhHHHHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhcccCc
Q 004950 128 MYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMS 207 (722)
Q Consensus 128 ~~~~~~d~~~~~~~ede~~F~e~Rk~l~~ll~~i~~l~~~l~l~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~~gE~i~ 207 (722)
+++++ ++| ..|+.....+..++...++.++..+.+.+.+.+.+ .+|+..++|+++++.+++++.
T Consensus 335 ~d~~~----~~~---------~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~---~~~~~r~~a~~~l~~i~~~~~ 398 (876)
T 1qgr_A 335 ENDDD----DDW---------NPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKN---PDWRYRDAAVMAFGCILEGPE 398 (876)
T ss_dssp SSCCT----TCC---------CHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTC---SSHHHHHHHHHHHHHTSSSSC
T ss_pred ccccc----ccc---------HHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccC---CChHHHHHHHHHHHHHHcCCC
Confidence 32110 111 37888888888777654455666666666666643 689999999999999999987
Q ss_pred hhhhhcccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhh---cCCChHHHHHHhccccCCCCCCchhHHHH
Q 004950 208 EEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQE---HTQYIPVVLAAFLDERGIHHPNVHVSRRA 284 (722)
Q Consensus 208 ~~~~~~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~---~p~~L~~vL~~~l~~~Gl~~~~~~V~~ra 284 (722)
++.. ...++++++.++.. ..++|+.||..++++++||++++.. ++.+++.+++.++ .++.++ ++||.++
T Consensus 399 ~~~~---~~~~~~~l~~l~~~--l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~--~~l~~~-~~v~~~a 470 (876)
T 1qgr_A 399 PSQL---KPLVIQAMPTLIEL--MKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLI--EGLSAE-PRVASNV 470 (876)
T ss_dssp HHHH---HHHHHHHHHHHHHH--HTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHH--HHTTSC-HHHHHHH
T ss_pred HHHH---HHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHH--HHHcCC-HHHHHHH
Confidence 4432 13567777777652 3568899999999999999999876 5789999999999 788775 8899999
Q ss_pred HHHHHHHHHHhh--------------ccchHHHHHHHHHhhhhhhhhccCCcccccCCCCchhhHHHHHHHHHHccCCCC
Q 004950 285 SYLFMRVVKLLK--------------AKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVP 350 (722)
Q Consensus 285 ~ylf~r~~k~~r--------------~~L~~~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~L~Eaig~Lis~~~~~ 350 (722)
+.++.++++.++ ..+.||++.++..+..++.... . + ...-+..++|++|.++...+
T Consensus 471 ~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~----~--~--~~~~r~~~~~~l~~l~~~~~-- 540 (876)
T 1qgr_A 471 CWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPD----G--H--QNNLRSSAYESLMEIVKNSA-- 540 (876)
T ss_dssp HHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCS----S--C--STTHHHHHHHHHHHHHHTCC--
T ss_pred HHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcC----c--c--hhhHHHHHHHHHHHHHHHCc--
Confidence 999999999987 3488999999999988774211 0 0 11224579999999999865
Q ss_pred hhhhHHHHHHhHHHHHHHHHHHHHhhhccCCchhhhHHHh-HHHHHHHHHHhhhccC-----CCc------------cCC
Q 004950 351 PEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFAN-IQQIIMAINALSKGFN-----ERL------------VTS 412 (722)
Q Consensus 351 ~e~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~i~~l~~lakgf~-----~~~------------~~~ 412 (722)
++...++..+++++++.+...++.......+++...... ...++.+++.+.++++ ++. ...
T Consensus 541 -~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~ 619 (876)
T 1qgr_A 541 -KDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTA 619 (876)
T ss_dssp -STTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC----
T ss_pred -hhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhcc
Confidence 246778899999998888765321110000011111001 1223333333333222 000 000
Q ss_pred ---C-c---------------chHHHHHHHHHHHHHHHHhcCCCChhHHhHHHHHHHHHHHhcCcccccchHHHHHHHHh
Q 004950 413 ---S-R---------------PAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLA 473 (722)
Q Consensus 413 ---~-~---------------~~~~~~~~~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~lg~~v~p~lp~li~~ll~ 473 (722)
. + .....++.++++.+...+... .+..||.++..++..++..+|..+.|+++.++..++.
T Consensus 620 ~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~ 698 (876)
T 1qgr_A 620 GSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNY-AEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLE 698 (876)
T ss_dssp -CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHC-TTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 0 0 012234566778888888753 4688999999999999999999999999999998876
Q ss_pred cCC-----hhhHHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHhhccCCCCCCCCCCCCHHHHH-HHHHHHHHHHHH
Q 004950 474 ESE-----PKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIRE-VQELQRTLYTFL 547 (722)
Q Consensus 474 ~~~-----~~~~~~fL~~~~qli~~f~~~~~~~l~~ll~~l~~~v~~~l~~~~~~~~p~~~~d~~r~-~~~l~r~y~~fl 547 (722)
..+ ..-....++.++.++..+++++.+.+..+++.+ ...++.. .+.++|+.++ ...+++.++..+
T Consensus 699 ~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l----~~~~~~~-----~~~~d~~~~~~~~~~r~~~~~~~ 769 (876)
T 1qgr_A 699 NLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTL----QQASQAQ-----VDKSDYDMVDYLNELRESCLEAY 769 (876)
T ss_dssp HHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHH----HHHHTCC-----CCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHH----HHHHhcc-----CCCCChHHHHHHHHHHHHHHHHH
Confidence 542 233467889999999999988777666655544 4444422 1122343333 346788888888
Q ss_pred HHHHhcCCCeeec----CCCCcCChHHHHHHHHHhhcCCC--chHHHHHHHHHHHHHHHHhh
Q 004950 548 HVIATHDLSSVFL----SPKSRGYLDPIMQLLLYTSCNHK--DYLVRKACVQIFIRLIKDWC 603 (722)
Q Consensus 548 ~~i~~~~~~~vl~----s~~~~~~l~~~l~~l~~~~~~~~--d~~~~k~a~~~l~~li~~~~ 603 (722)
..++..--..+.. .+...|+++.++..+.... +.+ +...++.|+..+.+++..++
T Consensus 770 ~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~vr~~a~~~l~~l~~~~~ 830 (876)
T 1qgr_A 770 TGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIA-GDEDHTDGVVACAAGLIGDLCTAFG 830 (876)
T ss_dssp HHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHH-TCSCCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 7776542111100 1234567777775554332 334 78899999999999998885
No 11
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.90 E-value=7.6e-22 Score=240.62 Aligned_cols=471 Identities=14% Similarity=0.104 Sum_probs=309.6
Q ss_pred HHHHHHHHHHHhhhc-----cCCccchhhHHHHHHHHHHHhccCCCChHHHH--HHHHHHH-HHHHHHcccCcccccCCc
Q 004950 63 KLLNEVLPSVFYVMQ-----NCEVDTTFSIVQFLSGYVATMKSLSPLKEEQR--LHAGQIL-EVILTQIRYDPMYRNNLD 134 (722)
Q Consensus 63 ~~l~~~~plvL~~~~-----~~d~~~~~~~~~F~~~~l~~lk~~~~l~~~~~--~~l~~Ll-~~li~km~yp~~~~~~~d 134 (722)
.++.++++.++..+. +.+++++..+++||+.+++.-+ ....++ +++.+++ .+++..|.|+++++ +.
T Consensus 283 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~----~~~~~~~~~~l~~li~~~i~~~m~~~~~d~--e~ 356 (960)
T 1wa5_C 283 PMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPK----YFEIFNNESAMNNITEQIILPNVTLREEDV--EL 356 (960)
T ss_dssp HHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHH----HHGGGCSHHHHHHHHHHTHHHHHSCCGGGT--TT
T ss_pred HHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHh----HHHHHcCchHHHHHHHHHhHHhcCCCHHHH--HH
Confidence 456677777777664 2366778899999999864211 122233 8999999 79999999987754 24
Q ss_pred cCCCCC-----hhHHHHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHhcC---CCCCChhhHHHHHHHHHHhcccC
Q 004950 135 VLDKIG-----IEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTF---SADRNVEEVEAALTLLYALGESM 206 (722)
Q Consensus 135 ~~~~~~-----~ede~~F~e~Rk~l~~ll~~i~~l~~~l~l~~i~~~l~~~l~~---~~~~~W~~~EaaL~~l~~~gE~i 206 (722)
|.++.+ +.|++++...|+...++++.++...++.++..+.+.+.+.+++ .++.+|+..|||++++++++++.
T Consensus 357 w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~ 436 (960)
T 1wa5_C 357 FEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAING 436 (960)
T ss_dssp TTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSS
T ss_pred HhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHh
Confidence 532210 1123456679999999999999888788877777777666641 22467999999999999998753
Q ss_pred ch-h-hhhc--ccccHHhH-----HHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhhcCCChHHHHHHhccccCCCCCC
Q 004950 207 SE-E-AMRT--GAGHLSEL-----VPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPN 277 (722)
Q Consensus 207 ~~-~-~~~~--~~~~l~~l-----~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~~p~~L~~vL~~~l~~~Gl~~~~ 277 (722)
.. + .... ....+.++ ++.+-. +...||.||.++++++|||++|+ +|++++++++.++ .++.+++
T Consensus 437 ~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~---~~~~~p~vr~~a~~~lg~~~~~~--~~~~l~~~l~~l~--~~L~d~~ 509 (960)
T 1wa5_C 437 NITNAGVSSTNNLLNVVDFFTKEIAPDLTS---NNIPHIILRVDAIKYIYTFRNQL--TKAQLIELMPILA--TFLQTDE 509 (960)
T ss_dssp CCBTTBCCCBCTTCCHHHHHHHHTHHHHHC---SSCSCHHHHHHHHHHHHHTGGGS--CHHHHHHHHHHHH--HHTTCSC
T ss_pred ccccCCcccccccccHHHHHHHHhHHHhcC---CCCCCceehHHHHHHHHHHHhhC--CHHHHHHHHHHHH--HHhCCCC
Confidence 21 1 1110 00123232 222221 22249999999999999999998 6889999999999 7898889
Q ss_pred chhHHHHHHHHHHHHHH-----------hhccchHHHHHHHHHhhhhhhhhccCCcccccCCCCchhhHHHHHHHHHHcc
Q 004950 278 VHVSRRASYLFMRVVKL-----------LKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGM 346 (722)
Q Consensus 278 ~~V~~ra~ylf~r~~k~-----------~r~~L~~~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~L~Eaig~Lis~ 346 (722)
+.||.+||++|.+||+. ++..+.||++++++.+-.++....+.+ . +..+.-+++++++.++..
T Consensus 510 ~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~-~-----~~~~~e~l~~al~~vv~~ 583 (960)
T 1wa5_C 510 YVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSP-E-----KLAENEFLMRSIFRVLQT 583 (960)
T ss_dssp HHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCH-H-----HHTSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCC-C-----cccccHHHHHHHHHHHHH
Confidence 99999999999999984 467899999999999998886321000 0 112345999999999997
Q ss_pred CCCChhhhHHHHHHhHHHHHHHHHHHHHhhhccCCchhhhHHHhHHHHHHHHHHhhhccCCCccCCCcchHHHHHHHHHH
Q 004950 347 EDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLD 426 (722)
Q Consensus 347 ~~~~~e~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~lakgf~~~~~~~~~~~~~~~~~~~~~ 426 (722)
.+ ++...|+..++++++..++...+. + ++... .+..+.++|.+++.-.+ ..+..+...+++
T Consensus 584 ~~---~~~~p~~~~l~~~L~~~l~~~~~~-----~-~~~~~---~~~~~e~l~~l~~~~~~-------~~~~~~~~~~~p 644 (960)
T 1wa5_C 584 SE---DSIQPLFPQLLAQFIEIVTIMAKN-----P-SNPRF---THYTFESIGAILNYTQR-------QNLPLLVDSMMP 644 (960)
T ss_dssp HT---TTTGGGHHHHHHHHHHHHHHHTTS-----C-CCHHH---HHHHHHHHHHHHHTSCG-------GGHHHHHHHHHH
T ss_pred HH---HhhhhHHHHHHHHHHHHHHHHHhC-----C-CCcHH---HHHHHHHHHHHHhcCCc-------chHHHHHHHHHH
Confidence 53 455668888888888877765321 1 11111 25678888888776111 135667788999
Q ss_pred HHHHHHhcCCCChhHHhHHHHHHHHHHHhcCcccccchHHHHHHHH--hcCCh-hhHHHHHHHHHHHHHHHhhhHHHHHH
Q 004950 427 VLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLL--AESEP-KEMAGFLVLLNQLICKFNTLVHDILD 503 (722)
Q Consensus 427 vi~~~l~~~~~~~~Vre~~~~~~~r~v~~lg~~v~p~lp~li~~ll--~~~~~-~~~~~fL~~~~qli~~f~~~~~~~l~ 503 (722)
++..+++... .+..+.+...++.++... ..+-|+++.+...++ ...+. .-+...+..+...+.+..+.+.+
T Consensus 645 ~~~~iL~~~~--~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~--- 718 (960)
T 1wa5_C 645 TFLTVFSEDI--QEFIPYVFQIIAFVVEQS-ATIPESIKPLAQPLLAPNVWELKGNIPAVTRLLKSFIKTDSSIFPD--- 718 (960)
T ss_dssp HHHHHHHTTC--TTTHHHHHHHHHHHHHHC-SSCCTTTGGGHHHHTSGGGGCCTTTHHHHHHHHHHHHHHHGGGCSC---
T ss_pred HHHHHHHhhh--HhhHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHcCHHHhcCCCCchhHHHHHHHHHHhChHHHHH---
Confidence 9999998543 467888888888888877 667788888888777 43332 23445556666666665543221
Q ss_pred hhhHHHHHHHHhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeeecCCCCcCChHHHHHHHHHhhcCCC
Q 004950 504 EVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHK 583 (722)
Q Consensus 504 ~ll~~l~~~v~~~l~~~~~~~~p~~~~d~~r~~~~l~r~y~~fl~~i~~~~~~~vl~s~~~~~~l~~~l~~l~~~~~~~~ 583 (722)
+..+++..-.++.. .+ +| ++.+.++..++.+-+... ..|+++.++..++.......
T Consensus 719 --~~~~l~~~~~~~~~-------~~-~~---------~~a~~ll~~i~~~~~~~~-----~~~yl~~i~~~l~~~l~~~~ 774 (960)
T 1wa5_C 719 --LVPVLGIFQRLIAS-------KA-YE---------VHGFDLLEHIMLLIDMNR-----LRPYIKQIAVLLLQRLQNSK 774 (960)
T ss_dssp --SHHHHHHHHHHHTC-------TT-TH---------HHHHHHHHHHHHHSCHHH-----HGGGHHHHHHHHHHGGGSSC
T ss_pred --HHHHHHHHHHHhCC-------Cc-cc---------chHHHHHHHHHHHCCHHH-----HHHHHHHHHHHHHHHHhhCC
Confidence 12222211222221 11 11 677888888887554331 35688988887775433333
Q ss_pred chHHHHHHHHHHHHHHHH
Q 004950 584 DYLVRKACVQIFIRLIKD 601 (722)
Q Consensus 584 d~~~~k~a~~~l~~li~~ 601 (722)
-+...|..+.+++.++-.
T Consensus 775 ~~~~~~~~l~~~~~~~~~ 792 (960)
T 1wa5_C 775 TERYVKKLTVFFGLISNK 792 (960)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHH
Confidence 344555667777766633
No 12
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.59 E-value=1.9e-11 Score=147.00 Aligned_cols=345 Identities=12% Similarity=0.149 Sum_probs=235.6
Q ss_pred CChhhHHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhhc-CCChHHHHH
Q 004950 187 RNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEH-TQYIPVVLA 265 (722)
Q Consensus 187 ~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~~-p~~L~~vL~ 265 (722)
..|....+|.-++..+++..++ ..++.+++.+.+. ...+++.+|.+++..++..++..... ..+++.+++
T Consensus 333 ~~~~vr~~a~~~L~~la~~~~~-------~~~~~l~~~l~~~--l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~ 403 (852)
T 4fdd_A 333 SDWNLRKCSAAALDVLANVYRD-------ELLPHILPLLKEL--LFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIP 403 (852)
T ss_dssp CCCCHHHHHHHHHHHHHHHHGG-------GGHHHHHHHHHHH--HTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhccH-------HHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 5799899999999999988653 3566677766552 23467999999999999998876532 248899999
Q ss_pred HhccccCCCCCCchhHHHHHHHHHHHHHHhhcc-chHHHHHHHHHhhhhhhhhccCCcccccCCCCchhhHHHHHHHHHH
Q 004950 266 AFLDERGIHHPNVHVSRRASYLFMRVVKLLKAK-LVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLI 344 (722)
Q Consensus 266 ~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~-L~~~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~L~Eaig~Li 344 (722)
.++ .++.+++++||..++.++.++++.+... ..+|+.+++..+-..+.-. .++-+.....+++.++
T Consensus 404 ~l~--~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~-----------~~~vr~~a~~aL~~l~ 470 (852)
T 4fdd_A 404 HLI--QCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDS-----------NKRVQEAACSAFATLE 470 (852)
T ss_dssp HHH--HHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCS-----------SHHHHHHHHHHHHHHH
T ss_pred HHH--HHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCC-----------CHHHHHHHHHHHHHHH
Confidence 999 7889999999999999999999987654 4567777777776655210 1233556677777777
Q ss_pred ccCCCChhhhHHHHHHhHHHHHHHHHHHHHhhhccCCchhhhHHHhHHHHHHHHHHhhhccCCCccCCCcchHHHHHHHH
Q 004950 345 GMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQT 424 (722)
Q Consensus 345 s~~~~~~e~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~lakgf~~~~~~~~~~~~~~~~~~~ 424 (722)
...+ +....++..++..++ .+++... . . ....++.+++++++...... ....++..+
T Consensus 471 ~~~~---~~l~~~l~~ll~~L~----~~l~~~~----~---~---~~~~~~~ai~~l~~~~~~~~------~~~~~~~~l 527 (852)
T 4fdd_A 471 EEAC---TELVPYLAYILDTLV----FAFSKYQ----H---K---NLLILYDAIGTLADSVGHHL------NKPEYIQML 527 (852)
T ss_dssp HHHG---GGGGGGHHHHHHHHH----HHHHHCC----H---H---HHHHHHHHHHHHHHHHGGGG------CCHHHHHHH
T ss_pred HHhh---HhhHhHHHHHHHHHH----HHHHHhC----h---H---HHHHHHHHHHHHHHHhhhhh------ccHHHHHHH
Confidence 6532 223345544444444 4443211 1 1 12235566666655443211 013567788
Q ss_pred HHHHHHHHhcCCC-ChhHHhHHHHHHHHHHHhcCcccccchHHHHHHHHhcC--------------------ChhhHHHH
Q 004950 425 LDVLLQILVVFPK-VEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAES--------------------EPKEMAGF 483 (722)
Q Consensus 425 ~~vi~~~l~~~~~-~~~Vre~~~~~~~r~v~~lg~~v~p~lp~li~~ll~~~--------------------~~~~~~~f 483 (722)
++.+....+.... +..++ .+..++..++..+|..+.||++.++..++... +..-....
T Consensus 528 ~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~ 606 (852)
T 4fdd_A 528 MPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVA 606 (852)
T ss_dssp HHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHH
T ss_pred HHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHH
Confidence 8888877666543 34554 78999999999999999999999777543321 11234567
Q ss_pred HHHHHHHHHHHhhhHHHHH--HhhhHHHHHHHHhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeeecC
Q 004950 484 LVLLNQLICKFNTLVHDIL--DEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLS 561 (722)
Q Consensus 484 L~~~~qli~~f~~~~~~~l--~~ll~~l~~~v~~~l~~~~~~~~p~~~~d~~r~~~~l~r~y~~fl~~i~~~~~~~vl~s 561 (722)
++.++.++...+.++.+.+ ..+++ .+...++. + .+ +++++.+.++..+.....
T Consensus 607 l~~l~~l~~~l~~~~~~~~~~~~~~~----~l~~~l~~------~--~~-------~vr~~a~~~l~~l~~~~~------ 661 (852)
T 4fdd_A 607 LDLLSGLAEGLGGNIEQLVARSNILT----LMYQCMQD------K--MP-------EVRQSSFALLGDLTKACF------ 661 (852)
T ss_dssp HHHHHHHHHHHGGGGHHHHHTCCHHH----HHHHHTTC------S--SH-------HHHHHHHHHHHHHHHHCG------
T ss_pred HHHHHHHHHHHhHhHHHHhcCCcHHH----HHHHHhCC------C--Ch-------hHHHHHHHHHHHHHHHhh------
Confidence 7999999999998888776 33333 33444542 1 12 388999999998886443
Q ss_pred CCCcCChHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhh
Q 004950 562 PKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDWC 603 (722)
Q Consensus 562 ~~~~~~l~~~l~~l~~~~~~~~d~~~~k~a~~~l~~li~~~~ 603 (722)
....++++.++..+.. .++..++..++.|+..+..+....+
T Consensus 662 ~~~~~~l~~~lp~l~~-~l~~~~~~v~~~a~~alg~i~~~~~ 702 (852)
T 4fdd_A 662 QHVKPCIADFMPILGT-NLNPEFISVCNNATWAIGEISIQMG 702 (852)
T ss_dssp GGTGGGHHHHHHHHHH-TCCTTSHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHH-HcCccchHHHHHHHHHHHHHHHHhh
Confidence 2345678887776665 4577788999999999999886665
No 13
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.43 E-value=9.4e-12 Score=155.53 Aligned_cols=446 Identities=14% Similarity=0.170 Sum_probs=281.0
Q ss_pred HHHHHHHHHhhhccCCccchhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHcccCcccccC--CccCCCCChh
Q 004950 65 LNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLSPLKEEQRLHAGQILEVILTQIRYDPMYRNN--LDVLDKIGIE 142 (722)
Q Consensus 65 l~~~~plvL~~~~~~d~~~~~~~~~F~~~~l~~lk~~~~l~~~~~~~l~~Ll~~li~km~yp~~~~~~--~d~~~~~~~e 142 (722)
+.+++|.++..++++++++...++..+..+...++ +...+|+.+++..+++.|+|+++...+ ++|.++.+++
T Consensus 253 l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~------~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~ 326 (1230)
T 1u6g_C 253 LEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCP------KEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDAD 326 (1230)
T ss_dssp CTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTT------CCCHHHHHHHHHHHTTCCCCC------------------
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHCh------HHHHHhHHHHHHHHHHHhCCCCCCCCccccccccccccc
Confidence 45788999999998888887788888888776533 234678999999999999997754210 0111000000
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhcccCchhhhhcccccHHhH
Q 004950 143 -EEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSEL 221 (722)
Q Consensus 143 -de~~F~e~Rk~l~~ll~~i~~l~~~l~l~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l 221 (722)
+++++.+. + + .+.......|...++|+.++..++...+.. -...++.+
T Consensus 327 ~~~~~~~~~--------------~-~------------~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~----~~~~~~~l 375 (1230)
T 1u6g_C 327 GGDDDDQGS--------------D-D------------EYSDDDDMSWKVRRAAAKCLDAVVSTRHEM----LPEFYKTV 375 (1230)
T ss_dssp ---------------------------------------------CTTHHHHHHHHHHHHHHTTCCTT----HHHHHTTT
T ss_pred ccccchhhc--------------c-c------------ccccccccCHHHHHHHHHHHHHHHHhchhH----HHHHHHHH
Confidence 00000000 0 0 000012357999999999999998854421 12456667
Q ss_pred HHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhh--------------------cCCChHHHHHHhccccCCCCCCchhH
Q 004950 222 VPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQE--------------------HTQYIPVVLAAFLDERGIHHPNVHVS 281 (722)
Q Consensus 222 ~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~--------------------~p~~L~~vL~~~l~~~Gl~~~~~~V~ 281 (722)
++.+.. .....|+.||...+.+++....-... -..++|.+++.+. ..+.+++.++|
T Consensus 376 ~~~l~~--~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~--~~l~~~~~~vr 451 (1230)
T 1u6g_C 376 SPALIS--RFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALH--KQMKEKSVKTR 451 (1230)
T ss_dssp HHHHHS--TTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHH--HHTTCSCHHHH
T ss_pred HHHHHH--HcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHH--HHhccCCHHHH
Confidence 777765 34567889999999887766543211 1246778888877 66888899999
Q ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHhhhhhhhhccCCcccccCCCCchhhHHHHHHHHHHccCCCChhhhHHHHHHh
Q 004950 282 RRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSL 361 (722)
Q Consensus 282 ~ra~ylf~r~~k~~r~~L~~~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~L~Eaig~Lis~~~~~~e~~~~~l~~l 361 (722)
.+++.++..+++.++..+.+|++.++..+...+.-.. . ..+-+.....+++.++.. ..++....+++.+
T Consensus 452 ~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~-------~--~~~v~~~a~~~l~~~~~~--~~~~~~~~~l~~l 520 (1230)
T 1u6g_C 452 QCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKS-------S--SSNLKIDALSCLYVILCN--HSPQVFHPHVQAL 520 (1230)
T ss_dssp HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSS-------S--CHHHHHHHHHHHHHHHHS--SCGGGGHHHHTTT
T ss_pred HHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCC-------C--cchHHHHHHHHHHHHHHh--CCHHHHHhHHHHH
Confidence 9999999999999998899999999999988774211 0 012233333344444433 2455566788888
Q ss_pred HHHHHHHHHHHHHhhhccCCchhhhHHHhHHHHHHHHHHhhhccCCCccCCCcchHHHHHHHHHHHHHHHHhcCCCChhH
Q 004950 362 LTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPL 441 (722)
Q Consensus 362 l~pl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~lakgf~~~~~~~~~~~~~~~~~~~~~vi~~~l~~~~~~~~V 441 (722)
+++++..+ + +. . ..+ ....+.+++.+++.+....... ......++.++++.++..+.....+..|
T Consensus 521 lp~L~~~l----~------d~-~-~~v--~~~al~~l~~l~~~~~~~~~~~-~~~~~~~~~~ll~~ll~~l~~~d~~~~v 585 (1230)
T 1u6g_C 521 VPPVVACV----G------DP-F-YKI--TSEALLVTQQLVKVIRPLDQPS-SFDATPYIKDLFTCTIKRLKAADIDQEV 585 (1230)
T ss_dssp HHHHHHHH----T------CS-S-HHH--HHHHHHHHHHHHHHHCCSSSCC-CCCCHHHHHHHHHHHHHHHSCSSSCHHH
T ss_pred HHHHHHHH----c------cc-c-hHH--HHHHHHHHHHHHHHhcCccccc-ccchHHHHHHHHHHHHHHHhccCCCHHH
Confidence 88777533 1 11 0 111 2356777787877776521111 1124567888999999999766788899
Q ss_pred HhHHHHHHHHHHHhcCcccccchHHHHHHHHhcCCh--hhHHHHHHHHHHHHHH-HhhhHHHHHHhhhHHHHHHHHhhcc
Q 004950 442 RCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEP--KEMAGFLVLLNQLICK-FNTLVHDILDEVFPAIAGRIFNIIP 518 (722)
Q Consensus 442 re~~~~~~~r~v~~lg~~v~p~lp~li~~ll~~~~~--~~~~~fL~~~~qli~~-f~~~~~~~l~~ll~~l~~~v~~~l~ 518 (722)
|+++..+++.++...|+.+.|++|.++..|...... .+. ..+..+++++.. ++.+..+++..+++.+ ...+.
T Consensus 586 r~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e~~r~-~~~~al~~i~~~~~~~~~~~~~~~i~~~L----~~~l~ 660 (1230)
T 1u6g_C 586 KERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRL-TTVKALTLIAGSPLKIDLRPVLGEGVPIL----ASFLR 660 (1230)
T ss_dssp HHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSSHHH-HHHHHHHHHTTCSSCCCCHHHHHHHHHHH----HHHTT
T ss_pred HHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccchhHH-HHHHHHHHHHhCccccchHHHHHHHHHHH----HHHHH
Confidence 999999999999999999999999999987765432 333 345666666531 1112344444444433 33443
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeeecCCCCcCChHHHHHHHHHhhcCCCchHHHHHHHHHHHHH
Q 004950 519 RDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRL 598 (722)
Q Consensus 519 ~~~~~~~p~~~~d~~r~~~~l~r~y~~fl~~i~~~~~~~vl~s~~~~~~l~~~l~~l~~~~~~~~d~~~~k~a~~~l~~l 598 (722)
.. + ..++.++...+..++.+....+ ..+.+..++..+.. ..+..|....+.++..|+.+
T Consensus 661 ~~--------~-------~~~r~~a~~al~~l~~~~~~~~-----~~~~v~~~l~~ll~-ll~~~D~~~~~~~~~~L~~l 719 (1230)
T 1u6g_C 661 KN--------Q-------RALKLGTLSALDILIKNYSDSL-----TAAMIDAVLDELPP-LISESDMHVSQMAISFLTTL 719 (1230)
T ss_dssp SC--------C-------HHHHHHHHHHHHHHHHHCCTTC-----CHHHHHHHHTTCGG-GSCTTCHHHHHHHHHHHHHH
T ss_pred hC--------C-------HHHHHHHHHHHHHHHhcccccC-----CHHHHHHHHHHHHh-hcCcchHHHHHHHHHHHHHH
Confidence 21 1 2388899999999998876543 11123333332221 12457888889999999999
Q ss_pred HHHhh
Q 004950 599 IKDWC 603 (722)
Q Consensus 599 i~~~~ 603 (722)
+...+
T Consensus 720 ~~~~~ 724 (1230)
T 1u6g_C 720 AKVYP 724 (1230)
T ss_dssp TTSCG
T ss_pred HHhCc
Confidence 86543
No 14
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.35 E-value=9.3e-10 Score=132.08 Aligned_cols=352 Identities=11% Similarity=0.087 Sum_probs=227.7
Q ss_pred CChhhHHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHh-h-cCCChHHHH
Q 004950 187 RNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQ-E-HTQYIPVVL 264 (722)
Q Consensus 187 ~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~-~-~p~~L~~vL 264 (722)
.+|....+|..++..+++.++. ..++.+++.+.+. ...+++.+|.+++..++..++... . -..+++.++
T Consensus 340 ~~~~~r~~a~~~l~~l~~~~~~-------~~~~~~l~~l~~~--l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l 410 (876)
T 1qgr_A 340 DDWNPCKAAGVCLMLLATCCED-------DIVPHVLPFIKEH--IKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAM 410 (876)
T ss_dssp TCCCHHHHHHHHHHHHHHHHGG-------GGHHHHHHHHHHH--TTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHCcH-------hhHHHHHHHHHHH--ccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5799999999999999998763 3467777766652 345789999999999999887653 1 123678888
Q ss_pred HHhccccCCCCCCchhHHHHHHHHHHHHHHhhccc--hHHHHHHHHHhhhhhhhhccCCcccccCCCCchhhHHHHHHHH
Q 004950 265 AAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKL--VPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGL 342 (722)
Q Consensus 265 ~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L--~~~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~L~Eaig~ 342 (722)
+.++ .++.++++.||.+|+.++.++++.+...+ .+|++.++..+-..+.- .+.-+....-+++.
T Consensus 411 ~~l~--~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~------------~~~v~~~a~~al~~ 476 (876)
T 1qgr_A 411 PTLI--ELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA------------EPRVASNVCWAFSS 476 (876)
T ss_dssp HHHH--HHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS------------CHHHHHHHHHHHHH
T ss_pred HHHH--HHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHH
Confidence 8888 67778999999999999999999988764 57888888877665521 01113344455566
Q ss_pred HHccCC-----------CChhhhHHHHHHhHHHHHHHHHHHHHhhhccCCchhhhHHHhHHHHHHHHHHhhhccCCCccC
Q 004950 343 LIGMED-----------VPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVT 411 (722)
Q Consensus 343 Lis~~~-----------~~~e~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~lakgf~~~~~~ 411 (722)
++...+ .+.+....++..+++.++. ++.... .+.... ....+.+++.+.+..+.
T Consensus 477 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~----~l~~~~--~~~~~~-----r~~~~~~l~~l~~~~~~---- 541 (876)
T 1qgr_A 477 LAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLE----TTDRPD--GHQNNL-----RSSAYESLMEIVKNSAK---- 541 (876)
T ss_dssp HHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHH----HTTSCS--SCSTTH-----HHHHHHHHHHHHHTCCS----
T ss_pred HHHHhhhccccccccccccchhhhHhHHHHHHHHHH----HHhCcC--cchhhH-----HHHHHHHHHHHHHHCch----
Confidence 555321 0111223354554444443 332211 011011 13566777777766542
Q ss_pred CCcchHHHHHHHHHHHHHHHHhcC--------CC-C----hhHHhHHHHHHHHHHHhcC-cccccchHHHHHHHHhcCCh
Q 004950 412 SSRPAIGLMFKQTLDVLLQILVVF--------PK-V----EPLRCKVTSFIHRMVDTLG-ASVFPYLPKALEQLLAESEP 477 (722)
Q Consensus 412 ~~~~~~~~~~~~~~~vi~~~l~~~--------~~-~----~~Vre~~~~~~~r~v~~lg-~~v~p~lp~li~~ll~~~~~ 477 (722)
.......++++.++..+... .. + ..+++.++.++..++..+| ..+.|++|.++..++.....
T Consensus 542 ----~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~ 617 (876)
T 1qgr_A 542 ----DCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQS 617 (876)
T ss_dssp ----TTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC--
T ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHh
Confidence 12345566666666665531 11 1 4678899999999999999 89999999999988875532
Q ss_pred h-----hHHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 004950 478 K-----EMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIAT 552 (722)
Q Consensus 478 ~-----~~~~fL~~~~qli~~f~~~~~~~l~~ll~~l~~~v~~~l~~~~~~~~p~~~~d~~r~~~~l~r~y~~fl~~i~~ 552 (722)
. -....+..++.++...+..+.+.+..+++.+ ...+... .. .++++..+..+..++.
T Consensus 618 ~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l----~~~l~~~-------~~-------~~vr~~a~~~l~~l~~ 679 (876)
T 1qgr_A 618 TAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFL----GIGLKNY-------AE-------YQVCLAAVGLVGDLCR 679 (876)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHH----HHHHHHC-------TT-------HHHHHHHHHHHHHHHH
T ss_pred ccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHH----HHHHcCc-------ch-------HHHHHHHHHHHHHHHH
Confidence 2 2346778888999888877777666655433 4444421 01 1277778888877775
Q ss_pred cCCCeeecCCCCcCChHHHHHHHHHhhcC-CCchHHHHHHHHHHHHHHHHhhC
Q 004950 553 HDLSSVFLSPKSRGYLDPIMQLLLYTSCN-HKDYLVRKACVQIFIRLIKDWCA 604 (722)
Q Consensus 553 ~~~~~vl~s~~~~~~l~~~l~~l~~~~~~-~~d~~~~k~a~~~l~~li~~~~~ 604 (722)
... +...++++.++..+...... ..+...+..++..+.+++...|.
T Consensus 680 ~~~------~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~ 726 (876)
T 1qgr_A 680 ALQ------SNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGG 726 (876)
T ss_dssp HHG------GGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGG
T ss_pred HHH------HhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhch
Confidence 321 22344566777766653222 13566888899999999876653
No 15
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.28 E-value=1.4e-08 Score=121.54 Aligned_cols=349 Identities=11% Similarity=0.108 Sum_probs=229.2
Q ss_pred CChhhHHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHh--hcCCChHHHH
Q 004950 187 RNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQ--EHTQYIPVVL 264 (722)
Q Consensus 187 ~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~--~~p~~L~~vL 264 (722)
..|....++.-++..+++.++. ..++.+++.+.+. ...+++.+|.+++..++...+... .-..+++.++
T Consensus 343 ~~~~~r~~a~~~L~~l~~~~~~-------~~~~~l~~~l~~~--l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il 413 (861)
T 2bpt_A 343 DDWNVSMSAGACLQLFAQNCGN-------HILEPVLEFVEQN--ITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQAL 413 (861)
T ss_dssp CCCHHHHHHHHHHHHHHHHHGG-------GGHHHHHHHHHHH--TTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHHccH-------hHHHHHHHHHHHH--cCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4598889999999999887652 3567777777652 334678999999999998775432 1134678888
Q ss_pred HHhccccCCCCCCchhHHHHHHHHHHHHHHhhccc--hHHHHHHHHHhhhhhhhhccCCcccccCCCCchhhHHHHHHHH
Q 004950 265 AAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKL--VPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGL 342 (722)
Q Consensus 265 ~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L--~~~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~L~Eaig~ 342 (722)
+.++ .++.++++.||.++++++.++++.+..++ .+|++.++..+-..+.- .+.-+.....+++.
T Consensus 414 ~~l~--~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~------------~~~v~~~a~~al~~ 479 (861)
T 2bpt_A 414 PSIL--NLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQD------------HPKVATNCSWTIIN 479 (861)
T ss_dssp HHHH--HGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTS------------CHHHHHHHHHHHHH
T ss_pred HHHH--HHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhcc------------ChHHHHHHHHHHHH
Confidence 8888 67788999999999999999999988775 45777777776655420 11223344555666
Q ss_pred HHccCC-CChhhhHHHHHHhHHHHHHHHHHHHHhhhccCCchhhhHHHhHHHHHHHHHHhhhccCCCccCCCcchHHHHH
Q 004950 343 LIGMED-VPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMF 421 (722)
Q Consensus 343 Lis~~~-~~~e~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~lakgf~~~~~~~~~~~~~~~~ 421 (722)
++...+ ...+....++..+ +..+.+.+... +.+.+. -...+.+++.+++..+. .+...+
T Consensus 480 l~~~~~~~~~~~l~~~~~~i----l~~L~~~l~~~---d~~~~v-----r~~a~~al~~l~~~~~~--------~~~~~~ 539 (861)
T 2bpt_A 480 LVEQLAEATPSPIYNFYPAL----VDGLIGAANRI---DNEFNA-----RASAFSALTTMVEYATD--------TVAETS 539 (861)
T ss_dssp HHHHHSSSSSCGGGGGHHHH----HHHHHHHHTCS---CCGGGH-----HHHHHHHHHHHHHHCCG--------GGHHHH
T ss_pred HHHhcccccchhhHHHHHHH----HHHHHHHHhCc---CcchHH-----HHHHHHHHHHHHHHcch--------hhHHHH
Confidence 655422 0112223444443 33444444211 111111 13456677777766553 245567
Q ss_pred HHHHHHHHHHHhcC-------------CCChhHHhHHHHHHHHHHHhcCcccccchHHHHHHHHhcC---Ch-hhHHHHH
Q 004950 422 KQTLDVLLQILVVF-------------PKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAES---EP-KEMAGFL 484 (722)
Q Consensus 422 ~~~~~vi~~~l~~~-------------~~~~~Vre~~~~~~~r~v~~lg~~v~p~lp~li~~ll~~~---~~-~~~~~fL 484 (722)
.++++.+...+... .....+|..++.++..++..+|..+.|+++.++..++... .. .-....+
T Consensus 540 ~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~ 619 (861)
T 2bpt_A 540 ASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVF 619 (861)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHH
Confidence 77888887777643 1245688899999999999999999999999998876643 22 2234566
Q ss_pred HHHHHHHHHHhhhHHHHHHhhhHHHHHHHHhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeeecCCCC
Q 004950 485 VLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKS 564 (722)
Q Consensus 485 ~~~~qli~~f~~~~~~~l~~ll~~l~~~v~~~l~~~~~~~~p~~~~d~~r~~~~l~r~y~~fl~~i~~~~~~~vl~s~~~ 564 (722)
..++.++...+.++.+.+..+++.+ +..++.. +++ +++..+..+..+...-- +..
T Consensus 620 ~~l~~l~~~~~~~~~~~l~~i~~~l----~~~l~~~--------~~~-------vr~~a~~~l~~l~~~~~------~~~ 674 (861)
T 2bpt_A 620 YAISALAASLGKGFEKYLETFSPYL----LKALNQV--------DSP-------VSITAVGFIADISNSLE------EDF 674 (861)
T ss_dssp HHHHHHHHHHGGGGHHHHHHHHHHH----HHHHHCT--------TSH-------HHHHHHHHHHHHHHHTG------GGG
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH----HHHhccc--------cHH-------HHHHHHHHHHHHHHHhc------hhc
Confidence 7888999989888888777666554 4444421 122 66777777777775321 223
Q ss_pred cCChHHHHHHHHHhhcCC-CchHHHHHHHHHHHHHHHHhh
Q 004950 565 RGYLDPIMQLLLYTSCNH-KDYLVRKACVQIFIRLIKDWC 603 (722)
Q Consensus 565 ~~~l~~~l~~l~~~~~~~-~d~~~~k~a~~~l~~li~~~~ 603 (722)
.++++.++..+.....+. .|+..+..++..+..++...+
T Consensus 675 ~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~ 714 (861)
T 2bpt_A 675 RRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIG 714 (861)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHG
T ss_pred cchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhh
Confidence 456666777666543332 347888999999999997654
No 16
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.22 E-value=3.7e-10 Score=124.93 Aligned_cols=184 Identities=13% Similarity=0.084 Sum_probs=139.7
Q ss_pred HHHHHHHhhhccCCccchhhHHHHHHHHHHHhc------cC---------CCChHHHHHHHHHHHHHHHHHcccCccccc
Q 004950 67 EVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMK------SL---------SPLKEEQRLHAGQILEVILTQIRYDPMYRN 131 (722)
Q Consensus 67 ~~~plvL~~~~~~d~~~~~~~~~F~~~~l~~lk------~~---------~~l~~~~~~~l~~Ll~~li~km~yp~~~~~ 131 (722)
.++|+++.++.++++++...+++||..+.+... .. .......++++..++..+++.|.-.++++
T Consensus 259 ~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~- 337 (462)
T 1ibr_B 259 ALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDEND- 337 (462)
T ss_dssp THHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSC-
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhccccc-
Confidence 788888888888888888999999999886631 00 12333456678899999999886433221
Q ss_pred CCccCCCCChhHHHHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhcccCchhhh
Q 004950 132 NLDVLDKIGIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAM 211 (722)
Q Consensus 132 ~~d~~~~~~~ede~~F~e~Rk~l~~ll~~i~~l~~~l~l~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~~gE~i~~~~~ 211 (722)
+.++| ..|+...+.++.++...++.++..+.+.+.+.+.+ .+|+..++|+++++.+++++.++..
T Consensus 338 ---~~~~~---------~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~---~~~~~r~aal~~l~~l~~~~~~~~~ 402 (462)
T 1ibr_B 338 ---DDDDW---------NPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKN---PDWRYRDAAVMAFGCILEGPEPSQL 402 (462)
T ss_dssp ---CTTCC---------SHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTC---SSHHHHHHHHHHHHHTSSSSCTTTT
T ss_pred ---ccccc---------hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHhcCCcHHHH
Confidence 11111 36888889999877765577777777888877754 6899999999999999998764322
Q ss_pred hcccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhh---cCCChHHHHHHhccccCC
Q 004950 212 RTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQE---HTQYIPVVLAAFLDERGI 273 (722)
Q Consensus 212 ~~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~---~p~~L~~vL~~~l~~~Gl 273 (722)
...++++++.++. ...++||.||.++++++++|++|+.. ++.|++++++.++ .++
T Consensus 403 ---~~~l~~~~~~l~~--~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll--~~L 460 (462)
T 1ibr_B 403 ---KPLVIQAMPTLIE--LMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLI--EGL 460 (462)
T ss_dssp ---CTTTTTHHHHHHH--GGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHH--CC-
T ss_pred ---HHHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHH--HHh
Confidence 2456778888776 34668999999999999999999987 5789999999998 555
No 17
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.99 E-value=3.8e-07 Score=103.84 Aligned_cols=416 Identities=13% Similarity=0.112 Sum_probs=244.1
Q ss_pred HHHHHHHHHhhhccCCccchhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHcccCcccccCCccCCCCChhHH
Q 004950 65 LNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLSPLKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEE 144 (722)
Q Consensus 65 l~~~~plvL~~~~~~d~~~~~~~~~F~~~~l~~lk~~~~l~~~~~~~l~~Ll~~li~km~yp~~~~~~~d~~~~~~~ede 144 (722)
...++|.+...+.+++..+...+...+..+...+.. ..+...++..+..-+. | +++
T Consensus 162 ~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~--------~~~~~~l~~~l~~~~~---d------------~~~- 217 (588)
T 1b3u_A 162 KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL--------DNVKSEIIPMFSNLAS---D------------EQD- 217 (588)
T ss_dssp HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH--------HHHHHTHHHHHHHHHT---C------------SCH-
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcH--------HhHHHHHHHHHHHHhc---C------------CcH-
Confidence 456788888888888888887888888887755321 1223445555443332 1 011
Q ss_pred HHHHHHHHHHHHHHHHHHH-cChhhHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhcccCchhhhhcccccHHhHHH
Q 004950 145 DRMVEYRKDLLVLLRSVGR-VAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVP 223 (722)
Q Consensus 145 ~~F~e~Rk~l~~ll~~i~~-l~~~l~l~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~ 223 (722)
+.|+.....+..++. ++++.....+.+.+.+.+.. .+|+..++++.+++.+++.++++. ..+.+++
T Consensus 218 ----~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d---~~~~vR~~a~~~l~~l~~~~~~~~------~~~~l~~ 284 (588)
T 1b3u_A 218 ----SVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAED---KSWRVRYMVADKFTELQKAVGPEI------TKTDLVP 284 (588)
T ss_dssp ----HHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTC---SSHHHHHHHHHTHHHHHHHHCHHH------HHHTHHH
T ss_pred ----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccC---CCHHHHHHHHHHHHHHHHHhCccc------chhHHHH
Confidence 356655555555444 45555555555666666543 689999999999999999876542 2344555
Q ss_pred HHHhCCCCCCChhHHHHHHHHHHHhhHHHHhhc---CCChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhhccch
Q 004950 224 MLLQTKLPCHSNRLVALVYLETVTRYMKFIQEH---TQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLV 300 (722)
Q Consensus 224 ~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~~---p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L~ 300 (722)
.+.+ ...++++.||..+.+.+++..+.+... +.+++.+++.+. ..+.+++.+||..++.++..+++.+....
T Consensus 285 ~l~~--~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~--~~l~d~~~~vR~~a~~~l~~l~~~~~~~~- 359 (588)
T 1b3u_A 285 AFQN--LMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIK--ELVSDANQHVKSALASVIMGLSPILGKDN- 359 (588)
T ss_dssp HHHH--HHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHH--HHHTCSCHHHHHHHHTTGGGGHHHHCHHH-
T ss_pred HHHH--HhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHH--HHhcCCCHHHHHHHHHHHHHHHHHhhHhH-
Confidence 5444 234578899999999999999876432 124555666665 45567889999999999999998776432
Q ss_pred HHHHHHHHHhhhhhhhhccCCcccccCCCCchhhHHHHHHHHHHccCCCChhhhHHHHHHhHHHHHHHHHHHHHhhhccC
Q 004950 301 PFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLN 380 (722)
Q Consensus 301 ~~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~L~Eaig~Lis~~~~~~e~~~~~l~~ll~pl~~~l~~~~~~~~~~~ 380 (722)
..+.++..+..++. +. ..+=+...++++|.+....+ .+ .+.+.+++.+. +.+.
T Consensus 360 -~~~~l~p~l~~~l~----------d~-~~~Vr~~a~~~l~~l~~~~~--~~---~~~~~~lp~l~----~~~~------ 412 (588)
T 1b3u_A 360 -TIEHLLPLFLAQLK----------DE-CPEVRLNIISNLDCVNEVIG--IR---QLSQSLLPAIV----ELAE------ 412 (588)
T ss_dssp -HHHHTHHHHHHHHT----------CS-CHHHHHHHHTTCHHHHHHSC--HH---HHHHHHHHHHH----HHHT------
T ss_pred -HHHHHHHHHHHHhC----------CC-chHHHHHHHHHHHHHHHhcC--HH---HHHHHHHHHHH----HHhc------
Confidence 12233333333331 00 12235667778888877643 22 12233333332 2221
Q ss_pred CchhhhHHHhHHHHHHHHHHhhhccCCCccCCCcchHHHHHHHHHHHHHHHHhcCCCChhHHhHHHHHHHHHHHhcCccc
Q 004950 381 PEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASV 460 (722)
Q Consensus 381 ~~~~~~~~~~~~~~i~~l~~lakgf~~~~~~~~~~~~~~~~~~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~lg~~v 460 (722)
+.. ..+ -...+.+++.+++.++... ....+++.+...+. ..+..||+++..++..++..+|+..
T Consensus 413 d~~--~~v--r~~~~~~l~~l~~~~~~~~----------~~~~l~~~l~~~l~--d~~~~Vr~~a~~~l~~l~~~~~~~~ 476 (588)
T 1b3u_A 413 DAK--WRV--RLAIIEYMPLLAGQLGVEF----------FDEKLNSLCMAWLV--DHVYAIREAATSNLKKLVEKFGKEW 476 (588)
T ss_dssp CSS--HHH--HHHHHHHHHHHHHHHCGGG----------CCHHHHHHHHHGGG--CSSHHHHHHHHHHHHHHHHHHCHHH
T ss_pred CCC--chH--HHHHHHHHHHHHHHcCHHH----------HHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHHhCchh
Confidence 111 111 2345667777766555310 11245677777665 6678999999999999999998753
Q ss_pred ccchHHHHHHHHh---cCChhhHHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHhhccCCCCCCCCCCCCHHHHHHH
Q 004950 461 FPYLPKALEQLLA---ESEPKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQ 537 (722)
Q Consensus 461 ~p~lp~li~~ll~---~~~~~~~~~fL~~~~qli~~f~~~~~~~l~~ll~~l~~~v~~~l~~~~~~~~p~~~~d~~r~~~ 537 (722)
+++.+++.+.. ..+..--...++.++.+...++.+ .++..+++.+ ...++. + ++
T Consensus 477 --~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~--~~~~~~~~~l----~~~l~d------~--~~------- 533 (588)
T 1b3u_A 477 --AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD--ITTKHMLPTV----LRMAGD------P--VA------- 533 (588)
T ss_dssp --HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH--HHHHHTHHHH----HHGGGC------S--CH-------
T ss_pred --HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHH----HhhCCC------C--Cc-------
Confidence 23444444432 222222345778888888777654 2344444433 444442 1 22
Q ss_pred HHHHHHHHHHHHHHhcCCCeeecCCCCcCCh-HHHHHHHHHhhcCCCchHHHHHHHHHHHHH
Q 004950 538 ELQRTLYTFLHVIATHDLSSVFLSPKSRGYL-DPIMQLLLYTSCNHKDYLVRKACVQIFIRL 598 (722)
Q Consensus 538 ~l~r~y~~fl~~i~~~~~~~vl~s~~~~~~l-~~~l~~l~~~~~~~~d~~~~k~a~~~l~~l 598 (722)
+++..-...+..+...--.. .+ +.++..+.. ..+-+|+.++..|...+..+
T Consensus 534 ~Vr~~a~~~l~~l~~~~~~~---------~~~~~~~p~l~~-l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 534 NVRFNVAKSLQKIGPILDNS---------TLQSEVKPILEK-LTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHHHHHHHHGGGSCHH---------HHHHHHHHHHHH-HTTCSSHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhchh---------hhHHHHHHHHHH-HcCCCchhHHHHHHHHHHHh
Confidence 27777777777776532110 11 223333333 35567888888888877653
No 18
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.87 E-value=3.6e-07 Score=114.11 Aligned_cols=383 Identities=11% Similarity=0.128 Sum_probs=231.6
Q ss_pred HHHHHHHHHHhhhcc-CCccchhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHcccCcccccCCccCCCCChh
Q 004950 64 LLNEVLPSVFYVMQN-CEVDTTFSIVQFLSGYVATMKSLSPLKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIE 142 (722)
Q Consensus 64 ~l~~~~plvL~~~~~-~d~~~~~~~~~F~~~~l~~lk~~~~l~~~~~~~l~~Ll~~li~km~yp~~~~~~~d~~~~~~~e 142 (722)
....++|.++.++.+ ++..+...++..|...++...+ ...+++.+++..++..+.-+ +
T Consensus 130 ~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~------~l~~~~~~ll~~l~~~L~~~---------------~ 188 (1230)
T 1u6g_C 130 VCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGG------LLVNFHPSILTCLLPQLTSP---------------R 188 (1230)
T ss_dssp HHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCS------SCTTTHHHHHHHHGGGGGCS---------------S
T ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHh------HHHHHHHHHHHHHHHHHcCC---------------c
Confidence 356788888888874 6667777888888888765422 12245677777777666411 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcChhhHH-HHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhcccCchhhhhcccccHHhH
Q 004950 143 EEDRMVEYRKDLLVLLRSVGRVAPEVTQ-VFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSEL 221 (722)
Q Consensus 143 de~~F~e~Rk~l~~ll~~i~~l~~~l~l-~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l 221 (722)
...|+.....+..++...++..+ .++..++.. +.+. .+|.....++-++..+++.++.. -...++++
T Consensus 189 -----~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~-L~~~--~~~~~r~~a~~~l~~l~~~~~~~----~~~~l~~l 256 (1230)
T 1u6g_C 189 -----LAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSE-LSKN--DSMSTTRTYIQCIAAISRQAGHR----IGEYLEKI 256 (1230)
T ss_dssp -----HHHHHHHHHHHHHHTTTC----CTTHHHHHHHH-HHHT--CSSCSCTTHHHHHHHHHHHSSGG----GTTSCTTH
T ss_pred -----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-hccC--CchhHHHHHHHHHHHHHHHhHHH----HHHHHHHH
Confidence 13677766666665554333222 223333332 2221 22556677888888888887642 12456677
Q ss_pred HHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhhc-CCChHHHHHHhccccCCC--------------------------
Q 004950 222 VPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEH-TQYIPVVLAAFLDERGIH-------------------------- 274 (722)
Q Consensus 222 ~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~~-p~~L~~vL~~~l~~~Gl~-------------------------- 274 (722)
++.+++. ...+++.||..+++.++...+..... ..|++.+++.++ ..+.
T Consensus 257 ~~~ll~~--l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll--~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~ 332 (1230)
T 1u6g_C 257 IPLVVKF--CNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICL--KYLTYDPNYNYDDEDEDENAMDADGGDDDD 332 (1230)
T ss_dssp HHHHHHH--HSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHT--TCCCCC------------------------
T ss_pred HHHHHHH--hcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHH--HHhCCCCCCCCcccccccccccccccccch
Confidence 7776653 22456779999999988877754321 127788888776 3331
Q ss_pred -----------CCCchhHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhhhhhhccCCcccccCCCCchhhHHHHHHHHH
Q 004950 275 -----------HPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLL 343 (722)
Q Consensus 275 -----------~~~~~V~~ra~ylf~r~~k~~r~~L~~~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~L~Eaig~L 343 (722)
+...+||..|+.++..+++.....+.+|++.++..+...+. +. ..+=+...+++++.+
T Consensus 333 ~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~----------d~-~~~Vr~~a~~~l~~l 401 (1230)
T 1u6g_C 333 QGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFK----------ER-EENVKADVFHAYLSL 401 (1230)
T ss_dssp ------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTS----------CS-SSHHHHHHHHHHHHH
T ss_pred hhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcC----------CC-chHHHHHHHHHHHHH
Confidence 11235788899999999985444566777777765543321 10 122245677788877
Q ss_pred HccCCCChh------------hhHHHHHHhHHHHHHHHHHHHHhhhccCCchhhhHHHhHHHHHHHHHHhhhccCCCccC
Q 004950 344 IGMEDVPPE------------KQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVT 411 (722)
Q Consensus 344 is~~~~~~e------------~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~lakgf~~~~~~ 411 (722)
+...+...+ .....++.+++.++..+.+.++. ++ ... ....+.+++.+.++.+..
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~-----~~---~~v--r~~~~~~L~~l~~~~~~~--- 468 (1230)
T 1u6g_C 402 LKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKE-----KS---VKT--RQCCFNMLTELVNVLPGA--- 468 (1230)
T ss_dssp HHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTC-----SC---HHH--HHHHHHHHHHHHHHSTTT---
T ss_pred HHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhcc-----CC---HHH--HHHHHHHHHHHHHHchhh---
Confidence 764331000 11345556666666655554431 11 111 134677778877775432
Q ss_pred CCcchHHHHHHHHHHHHHHHHhcCCCChhHHhHHHHHHHHHHHhcCcc-cccchHHHHHHHHhcCCh--hhH-HHHHHHH
Q 004950 412 SSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGAS-VFPYLPKALEQLLAESEP--KEM-AGFLVLL 487 (722)
Q Consensus 412 ~~~~~~~~~~~~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~lg~~-v~p~lp~li~~ll~~~~~--~~~-~~fL~~~ 487 (722)
....+.++++.+...+..-.....++..++..+..++...|+. +.||++.++..++...+. ... ...+..+
T Consensus 469 -----l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l 543 (1230)
T 1u6g_C 469 -----LTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVT 543 (1230)
T ss_dssp -----TGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred -----hHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHH
Confidence 1235678888888888743333589999999999999988876 677777777776654322 222 4567888
Q ss_pred HHHHHHHhh-------hHHHHHHhhhHHHHHH
Q 004950 488 NQLICKFNT-------LVHDILDEVFPAIAGR 512 (722)
Q Consensus 488 ~qli~~f~~-------~~~~~l~~ll~~l~~~ 512 (722)
+.++..++. .+.+.++.+++.++.+
T Consensus 544 ~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~ 575 (1230)
T 1u6g_C 544 QQLVKVIRPLDQPSSFDATPYIKDLFTCTIKR 575 (1230)
T ss_dssp HHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcccccccchHHHHHHHHHHHHHH
Confidence 899988876 4667666666655433
No 19
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.76 E-value=1.1e-05 Score=91.66 Aligned_cols=364 Identities=13% Similarity=0.089 Sum_probs=214.1
Q ss_pred HHHHHHHHHHHHHH-cChhhHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhC
Q 004950 150 YRKDLLVLLRSVGR-VAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQT 228 (722)
Q Consensus 150 ~Rk~l~~ll~~i~~-l~~~l~l~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~ 228 (722)
.|+.....+..++. ++++.+...+.+.+...+.. .+|...++|+.++..+++.++++. ..+.+++.+..
T Consensus 180 VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d---~~~~vr~~a~~~l~~l~~~~~~~~------~~~~~~~~l~~- 249 (588)
T 1b3u_A 180 VRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASD---EQDSVRLLAVEACVNIAQLLPQED------LEALVMPTLRQ- 249 (588)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTC---SCHHHHTTHHHHHHHHHHHSCHHH------HHHHTHHHHHH-
T ss_pred HHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHH-
Confidence 67777777776555 45555555555666665543 679999999999999999987642 22334444433
Q ss_pred CCCCCChhHHHHHHHHHHHhhHHHHhhcCCChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhhccch--HHHHHH
Q 004950 229 KLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLV--PFIENI 306 (722)
Q Consensus 229 ~i~~~~hp~V~~~~~e~i~RY~~~~~~~p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L~--~~~~~i 306 (722)
...++++.||..+.+.++...+.+... .+.+.+++.++ ..+.++++.||..+++.+.++++.+..... ++.+.+
T Consensus 250 -~~~d~~~~vR~~a~~~l~~l~~~~~~~-~~~~~l~~~l~--~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l 325 (588)
T 1b3u_A 250 -AAEDKSWRVRYMVADKFTELQKAVGPE-ITKTDLVPAFQ--NLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQI 325 (588)
T ss_dssp -HHTCSSHHHHHHHHHTHHHHHHHHCHH-HHHHTHHHHHH--HHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTH
T ss_pred -HccCCCHHHHHHHHHHHHHHHHHhCcc-cchhHHHHHHH--HHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHH
Confidence 123467899999999999998876332 12334455555 344578889999999999999998766533 456666
Q ss_pred HHHhhhhhhhhccCCcccccCCCCchhhHHHHHHHHHHccCCCChhhhHHHHHHhHHHHHHHHHHHHHhhhccCCchhhh
Q 004950 307 LQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTA 386 (722)
Q Consensus 307 l~~l~~ll~~~~~~~~~~~~~~~~~d~l~L~Eaig~Lis~~~~~~e~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~ 386 (722)
+..+..++.-. +..-+.....++|.+....+ .+ .....+++.+. ..++ +++.+.
T Consensus 326 ~p~l~~~l~d~-----------~~~vR~~a~~~l~~l~~~~~--~~---~~~~~l~p~l~----~~l~-----d~~~~V- 379 (588)
T 1b3u_A 326 LPCIKELVSDA-----------NQHVKSALASVIMGLSPILG--KD---NTIEHLLPLFL----AQLK-----DECPEV- 379 (588)
T ss_dssp HHHHHHHHTCS-----------CHHHHHHHHTTGGGGHHHHC--HH---HHHHHTHHHHH----HHHT-----CSCHHH-
T ss_pred HHHHHHHhcCC-----------CHHHHHHHHHHHHHHHHHhh--Hh---HHHHHHHHHHH----HHhC-----CCchHH-
Confidence 66665544200 11223344555555554432 11 11222222222 2221 111111
Q ss_pred HHHhHHHHHHHHHHhhhccCCCccCCCcchHHHHHHHHHHHHHHHHhcCCCChhHHhHHHHHHHHHHHhcCcccccchHH
Q 004950 387 KFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPK 466 (722)
Q Consensus 387 ~~~~~~~~i~~l~~lakgf~~~~~~~~~~~~~~~~~~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~lg~~v~p~lp~ 466 (722)
-...+.+++.+.+.++. ......+++.+...++ ..+..+|..+..++..+...+|..... |.
T Consensus 380 ----r~~a~~~l~~l~~~~~~----------~~~~~~~lp~l~~~~~--d~~~~vr~~~~~~l~~l~~~~~~~~~~--~~ 441 (588)
T 1b3u_A 380 ----RLNIISNLDCVNEVIGI----------RQLSQSLLPAIVELAE--DAKWRVRLAIIEYMPLLAGQLGVEFFD--EK 441 (588)
T ss_dssp ----HHHHHTTCHHHHHHSCH----------HHHHHHHHHHHHHHHT--CSSHHHHHHHHHHHHHHHHHHCGGGCC--HH
T ss_pred ----HHHHHHHHHHHHHhcCH----------HHHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHcCHHHHH--HH
Confidence 12344555555554431 1234567777777765 567899999999999999999987543 55
Q ss_pred HHHHHHhcCC--hhhH-HHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHhhccCCCCCCCCCCCCHHHHHHHHHHHHH
Q 004950 467 ALEQLLAESE--PKEM-AGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTL 543 (722)
Q Consensus 467 li~~ll~~~~--~~~~-~~fL~~~~qli~~f~~~~~~~l~~ll~~l~~~v~~~l~~~~~~~~p~~~~d~~r~~~~l~r~y 543 (722)
++..++.... ..++ ...+..++.++..++.+. .+..+++.+ ..+++. + .. .++..+
T Consensus 442 l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~--~~~~llp~l----~~~~~~------~--~~-------~~R~~a 500 (588)
T 1b3u_A 442 LNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEW--AHATIIPKV----LAMSGD------P--NY-------LHRMTT 500 (588)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHH--HHHHTHHHH----HHTTTC------S--CH-------HHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchh--HHHHHHHHH----HHHhhC------C--CH-------HHHHHH
Confidence 5555444331 1222 345677788888887652 233444433 333331 1 11 266677
Q ss_pred HHHHHHHHhcCCCeeecCCCCcCChHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 004950 544 YTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKD 601 (722)
Q Consensus 544 ~~fl~~i~~~~~~~vl~s~~~~~~l~~~l~~l~~~~~~~~d~~~~k~a~~~l~~li~~ 601 (722)
...+..+...-.. ..+.+.++..+... +..+++.++..++..|.++...
T Consensus 501 ~~~l~~l~~~~~~--------~~~~~~~~~~l~~~-l~d~~~~Vr~~a~~~l~~l~~~ 549 (588)
T 1b3u_A 501 LFCINVLSEVCGQ--------DITTKHMLPTVLRM-AGDPVANVRFNVAKSLQKIGPI 549 (588)
T ss_dssp HHHHHHHHHHHHH--------HHHHHHTHHHHHHG-GGCSCHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHhcCH--------HHHHHHHHHHHHhh-CCCCCchHHHHHHHHHHHHHHH
Confidence 7777766542100 01234455555543 4557788999999999988843
No 20
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=98.37 E-value=2.8e-05 Score=80.50 Aligned_cols=222 Identities=14% Similarity=0.290 Sum_probs=147.7
Q ss_pred chHHHHHHHHhcC----ChhhHHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHhhccCCCCCCCCCCCCHHHHHHHH
Q 004950 463 YLPKALEQLLAES----EPKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQE 538 (722)
Q Consensus 463 ~lp~li~~ll~~~----~~~~~~~fL~~~~qli~~f~~~~~~~l~~ll~~l~~~v~~~l~~~~~~~~p~~~~d~~r~~~~ 538 (722)
++|++++..+..+ ...+-++.|++...+|.|.++.+.+.+...+..+++-+..+++.. -...||
T Consensus 70 ~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe~TL~MI~~d-----f~eyPe------- 137 (321)
T 1w9c_A 70 FVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKD-----FEEYPE------- 137 (321)
T ss_dssp THHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSST-----TTCSHH-------
T ss_pred HHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcc-----cccChH-------
Confidence 4566666666544 223447899999999999998877777777777777778888852 234445
Q ss_pred HHHHHHHHHHHHHhcCCCeeecCCCCcCChHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhCCCCCCCCc-hhHHH
Q 004950 539 LQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDWCARPFVEEKV-PGFQS 617 (722)
Q Consensus 539 l~r~y~~fl~~i~~~~~~~vl~s~~~~~~l~~~l~~l~~~~~~~~d~~~~k~a~~~l~~li~~~~~~~~~~~~~-~gf~~ 617 (722)
.+.+||.|+.++.++....++.-+ .+.+..++.+++- |..|++..+..+++..+.+++......+ +.. .-|.+
T Consensus 138 hR~~Ff~LL~ai~~~cF~al~~lp--~~~fklvidsiiW-a~kH~~r~V~e~gL~il~~ll~n~~~~~---~~~~~Fy~~ 211 (321)
T 1w9c_A 138 HRTNFFLLLQAVNSHCFPAFLAIP--PTQFKLVLDSIIW-AFKHTMRNVADTGLQILFTLLQNVAQEE---AAAQSFYQT 211 (321)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHSC--HHHHHHHHHHHHH-HTTCSSHHHHHHHHHHHHHHHHHHHHCH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHcCC--HHHHHHHHHHHHH-HcCCCCchHHHHHHHHHHHHHHHHhcCh---HHHHHHHHH
Confidence 889999999999997766444322 3357778888774 7899999999999999999998876421 111 22233
Q ss_pred HHHHhhhhhhhhhcccCCCCCCCchhHHHHHHHHHHHHHHHHHHh----------------hh----HHHHHHHhccCCC
Q 004950 618 FMIEAFAMNCCLYSVLDKSFEFGDANTLVLFGEIVLAQKVMYEKF----------------GN----DFLVHFVTKGFPS 677 (722)
Q Consensus 618 fl~~~~~~~~~~~~~~~~~F~~~Da~~~~~l~eia~~l~~l~~~~----------------g~----e~~~~l~~~~lP~ 677 (722)
|...-+... +.+...+. . ..-+..-+.+|..|..-- .. +|+..+....||.
T Consensus 212 fy~~il~~i--f~VlTDs~-H------k~gF~~q~~iL~~lf~~ve~~~i~~pl~~~~~~~n~~~v~~~l~~lL~~~Fp~ 282 (321)
T 1w9c_A 212 YFCDILQHI--FSVVTDTS-H------TAGLTMHASILAYMFNLVEEGKISTSLNPGNPVNNQIFLQEYVANLLKSAFPH 282 (321)
T ss_dssp HHHHHHHHH--HHHHHSSS-C------CTTHHHHHHHHHHHHHHHHTTCCCSCSCSSSCCCHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHH--HHHHhCch-h------hccHHHHHHHHHHHHHHHHcCccccccCCCCCcccHHHHHHHHHHHHHHhCCC
Confidence 443322221 33322111 1 111234455555554211 12 2444444567888
Q ss_pred CCCCHHHHHHHHHHhcc--CCchHHHHHHHHHHHHHhh
Q 004950 678 AHCPPDLAEQYCQKLQG--NDIKALKSFYQSLIEKLRV 713 (722)
Q Consensus 678 ~~~~~~~~~~f~~~l~~--~~~k~~k~~~~~f~~~~r~ 713 (722)
+++++...|++.+-+ .|...||.+++||.-+.|-
T Consensus 283 --l~~~qi~~fv~glf~~~~d~~~Fk~~lrDFLIqiKE 318 (321)
T 1w9c_A 283 --LQDAQVKLFVTGLFSLNQDIPAFKEHLRDFLVQIKE 318 (321)
T ss_dssp --SCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHT
T ss_pred --CCHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 789999999999966 4678999999999998874
No 21
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.33 E-value=3e-05 Score=85.11 Aligned_cols=291 Identities=9% Similarity=0.060 Sum_probs=172.3
Q ss_pred ChhhHHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhCCCCCC-ChhHHHHHHHHHHHhhHHHHhhcCC---ChHHH
Q 004950 188 NVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCH-SNRLVALVYLETVTRYMKFIQEHTQ---YIPVV 263 (722)
Q Consensus 188 ~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~~i~~~-~hp~V~~~~~e~i~RY~~~~~~~p~---~L~~v 263 (722)
+|...|.++.+++.+.+...++. ....++.+++.+++. +... +++.||..++..++...+|+..+.+ +.+.+
T Consensus 143 ~~~~r~~al~~l~~l~~~~~~~~---~~~~~~~ll~~l~~~-l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l 218 (462)
T 1ibr_B 143 TEHMKESTLEAIGYICQDIDPEQ---LQDKSNEILTAIIQG-MRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFI 218 (462)
T ss_dssp CHHHHHHHHHHHHHHHHHSCGGG---TGGGHHHHHHHHHHH-HSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCchh---hHhHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 79999999999999998774332 124455666665542 2221 2789999999999987666654421 11223
Q ss_pred HHHhccccCCCCCCchhHHHHHHHHHHHHHHhhccchHHHH-HHHHHhhhhhhhhccCCcccccCCCCchhhHHHHHHHH
Q 004950 264 LAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIE-NILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGL 342 (722)
Q Consensus 264 L~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L~~~~~-~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~L~Eaig~ 342 (722)
++.+. ..+.+++..||..++..|..+++.+...+.+|++ .++..+-..+. +. ..+=+...+|.++.
T Consensus 219 ~~~l~--~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~----------~~-~~~v~~~a~~~l~~ 285 (462)
T 1ibr_B 219 MQVVC--EATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK----------SD-IDEVALQGIEFWSN 285 (462)
T ss_dssp HHHHH--HHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHH----------CS-SHHHHHHHHHHHHH
T ss_pred HHHHH--HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------CC-chHHHHHHHHHHHH
Confidence 44443 3445678899999999999999998888888888 77776544331 00 11224455666666
Q ss_pred HHccC------------------CCChhhhHHHHHHhHHHHHHHHHHHHHhhhccCCchhhhHHHhHHHHHHHHHHhhhc
Q 004950 343 LIGME------------------DVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKG 404 (722)
Q Consensus 343 Lis~~------------------~~~~e~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~lakg 404 (722)
+.... .....-...++..+++.++.. +.......++++ ... -.....+++.+++.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~----l~~~d~d~~~~~-~~~--r~~a~~~L~~l~~~ 358 (462)
T 1ibr_B 286 VCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQT----LTKQDENDDDDD-WNP--CKAAGVCLMLLATC 358 (462)
T ss_dssp HHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHH----TTCCCSSCCTTC-CSH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHH----HHhccccccccc-chH--HHHHHHHHHHHHHh
Confidence 55431 000000111233333333222 211100000111 111 23556677777777
Q ss_pred cCCCccCCCcchHHHHHHHHHHHHHHHHhcCCCChhHHhHHHHHHHHHHHhcC-cccccchHHHHHHHHhcCC--hhh-H
Q 004950 405 FNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLG-ASVFPYLPKALEQLLAESE--PKE-M 480 (722)
Q Consensus 405 f~~~~~~~~~~~~~~~~~~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~lg-~~v~p~lp~li~~ll~~~~--~~~-~ 480 (722)
++. .++..+++.+...+. ..+..+|+++..+++.+..... ..+.++++.++..++.... .+. -
T Consensus 359 ~~~-----------~~~~~~~~~l~~~l~--~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr 425 (462)
T 1ibr_B 359 CED-----------DIVPHVLPFIKEHIK--NPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVR 425 (462)
T ss_dssp TTT-----------THHHHHHHHHHHHTT--CSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHH
T ss_pred ccH-----------HHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 652 234456677776665 5678999999999999998665 4467788888887776542 122 2
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHhhc
Q 004950 481 AGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNII 517 (722)
Q Consensus 481 ~~fL~~~~qli~~f~~~~~~~l~~ll~~l~~~v~~~l 517 (722)
...++.++++...++..+. -...+.+++..++..|
T Consensus 426 ~~a~~~l~~~~~~~~~~~~--~~~~l~~ll~~Ll~~L 460 (462)
T 1ibr_B 426 DTAAWTVGRICELLPEAAI--NDVYLAPLLQCLIEGL 460 (462)
T ss_dssp HHHHHHHHHHHHHGGGGCC--STTTHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHhcccccc--cHHHHHHHHHHHHHHh
Confidence 5567889999988876431 0124455555555544
No 22
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.28 E-value=0.00012 Score=88.83 Aligned_cols=286 Identities=13% Similarity=0.203 Sum_probs=177.7
Q ss_pred ChhhHHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHh----------h--
Q 004950 188 NVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQ----------E-- 255 (722)
Q Consensus 188 ~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~----------~-- 255 (722)
+-.-.-.|+.+++.+++.+++ ..+..+++.+++. + ..+++.||..++..+.++.+-.. .
T Consensus 471 ~p~vr~~a~~~lg~~~~~~~~-------~~l~~~l~~l~~~-L-~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~ 541 (960)
T 1wa5_C 471 HIILRVDAIKYIYTFRNQLTK-------AQLIELMPILATF-L-QTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKED 541 (960)
T ss_dssp CHHHHHHHHHHHHHTGGGSCH-------HHHHHHHHHHHHH-T-TCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGG
T ss_pred CceehHHHHHHHHHHHhhCCH-------HHHHHHHHHHHHH-h-CCCChhHHHHHHHHHHHHHhcccccccccccccHHH
Confidence 444568899999999998753 2477777777763 3 34678999999999999776421 1
Q ss_pred cCCChHHHHHHhccccCCCCC-----CchhHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhhhhhhccCCcccccCCCC
Q 004950 256 HTQYIPVVLAAFLDERGIHHP-----NVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGS 330 (722)
Q Consensus 256 ~p~~L~~vL~~~l~~~Gl~~~-----~~~V~~ra~ylf~r~~k~~r~~L~~~~~~il~~l~~ll~~~~~~~~~~~~~~~~ 330 (722)
=..|++++++.++ .-+... .......+.+++.+++......+.||++.+++.+...+..... +....
T Consensus 542 l~p~l~~ll~~L~--~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~------~~~~~ 613 (960)
T 1wa5_C 542 ISNSTEILLKNLI--ALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAK------NPSNP 613 (960)
T ss_dssp TTTTHHHHHHHHH--HHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTT------SCCCH
T ss_pred hhhhHHHHHHHHH--HHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh------CCCCc
Confidence 1367888888876 233221 0113356777899999999999999999999999887764321 10012
Q ss_pred chhhHHHHHHHHHHccCCCChhhhHHHHHHhHHHHHHHHHHHHHhhhccCCchhhhHHHhHHHHHHHHHHhhhccCCCcc
Q 004950 331 EDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLV 410 (722)
Q Consensus 331 ~d~l~L~Eaig~Lis~~~~~~e~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~lakgf~~~~~ 410 (722)
.-..+++|++|.++.. ..++....+.+.+++++..-++.. . .+-.....++.+.+...+ ++|+++-.
T Consensus 614 ~~~~~~~e~l~~l~~~--~~~~~~~~~~~~~~p~~~~iL~~~----~----~~~~~~~~~i~~~l~~~~---~~~~~~~~ 680 (960)
T 1wa5_C 614 RFTHYTFESIGAILNY--TQRQNLPLLVDSMMPTFLTVFSED----I----QEFIPYVFQIIAFVVEQS---ATIPESIK 680 (960)
T ss_dssp HHHHHHHHHHHHHHHT--SCGGGHHHHHHHHHHHHHHHHHTT----C----TTTHHHHHHHHHHHHHHC---SSCCTTTG
T ss_pred HHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHHhh----h----HhhHHHHHHHHHHHHHhc---cCCCHHHH
Confidence 2345799999999998 355566677777776555544321 1 111222333333333222 45543210
Q ss_pred ---------C-CCc----chHHHHHHHH----------HHHHHHHHhcCCCChhHHhHHHHHHHHHHHhcCcc-cccchH
Q 004950 411 ---------T-SSR----PAIGLMFKQT----------LDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGAS-VFPYLP 465 (722)
Q Consensus 411 ---------~-~~~----~~~~~~~~~~----------~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~lg~~-v~p~lp 465 (722)
. ..+ +.+...+... ++.++.++.....+....+.++.++..++..+|.. +.||+|
T Consensus 681 ~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ll~~i~~~~~~~~~~~yl~ 760 (960)
T 1wa5_C 681 PLAQPLLAPNVWELKGNIPAVTRLLKSFIKTDSSIFPDLVPVLGIFQRLIASKAYEVHGFDLLEHIMLLIDMNRLRPYIK 760 (960)
T ss_dssp GGHHHHTSGGGGCCTTTHHHHHHHHHHHHHHHGGGCSCSHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHSCHHHHGGGHH
T ss_pred HHHHHHcCHHHhcCCCCchhHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHCCHHHHHHHHH
Confidence 0 000 1111111111 13333333322122223477899999999999988 999999
Q ss_pred HHHHHHHhcCC---hhhHH-HHHHHHHHHHHHHhhh-HHHHHH
Q 004950 466 KALEQLLAESE---PKEMA-GFLVLLNQLICKFNTL-VHDILD 503 (722)
Q Consensus 466 ~li~~ll~~~~---~~~~~-~fL~~~~qli~~f~~~-~~~~l~ 503 (722)
.++..++...+ ..++. .++.++..++++|+.+ +.+.++
T Consensus 761 ~i~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 803 (960)
T 1wa5_C 761 QIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLGSDFLIHFID 803 (960)
T ss_dssp HHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 99999887642 34455 7888999999999876 556665
No 23
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.17 E-value=9.4e-06 Score=82.40 Aligned_cols=200 Identities=12% Similarity=0.156 Sum_probs=135.6
Q ss_pred CChhhHHHHHHHHHH-hcccCchhhhhcccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHh-h-cC-CChHH
Q 004950 187 RNVEEVEAALTLLYA-LGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQ-E-HT-QYIPV 262 (722)
Q Consensus 187 ~~W~~~EaaL~~l~~-~gE~i~~~~~~~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~-~-~p-~~L~~ 262 (722)
.+|++.-+|+-.++. +.++++.-. .....+.+++..|... +..++|+.|+..++..++..++-+. . -. .|...
T Consensus 28 ~~w~eRk~al~~L~~~~~~~~~~i~--~~~~~~~~~~~~L~~~-l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~ 104 (249)
T 2qk1_A 28 SKWKDRVEALEEFWDSVLSQTKKLK--STSQNYSNLLGIYGHI-IQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSL 104 (249)
T ss_dssp SSHHHHHHHHHHHHHHTGGGCCCBC--CTTCCCHHHHHHHHHH-HHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCccc--cCcccHHHHHHHHHHH-hccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHH
Confidence 789999999999999 987765311 0012344566555542 3356889999999999999999886 3 34 68888
Q ss_pred HHHHhccccCCCCCCchhHHHHHHHHHHHHHHhhccch-HHHHHHHHHhhhhhhhhccCCcccccCCCCchhhHHHHHHH
Q 004950 263 VLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLV-PFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIG 341 (722)
Q Consensus 263 vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L~-~~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~L~Eaig 341 (722)
+|+.+++ .+.+..+.|+.++.+++..||+.+.+... +|++.+++.+-..+..+
T Consensus 105 llp~ll~--~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k------------------------ 158 (249)
T 2qk1_A 105 VFTPLLD--RTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK------------------------ 158 (249)
T ss_dssp HHHHHHH--GGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS------------------------
T ss_pred HHHHHHH--HHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC------------------------
Confidence 8999984 55577788999999999999998865332 23666666665444211
Q ss_pred HHHccCCCChhhhHHHHHHhHHHHHHHHHHHHHhhhccCCchhhhHHHhHHHHHHHHHHhhhccCCCccCCCcchHHHHH
Q 004950 342 LLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMF 421 (722)
Q Consensus 342 ~Lis~~~~~~e~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~lakgf~~~~~~~~~~~~~~~~ 421 (722)
.+.-+ ...+.+|+++.+..+.. + ......+
T Consensus 159 --------~~~vk-------------------------------------~~al~~l~~~~~~~~~~----~-~~l~~~l 188 (249)
T 2qk1_A 159 --------TPQIR-------------------------------------MECTQLFNASMKEEKDG----Y-STLQRYL 188 (249)
T ss_dssp --------SHHHH-------------------------------------HHHHHHHHHHHHHCCSC----S-HHHHHHH
T ss_pred --------ChHHH-------------------------------------HHHHHHHHHHHHHcCCc----c-hhHHHHH
Confidence 01000 12223333333322210 0 0123456
Q ss_pred -HHHHHHHHHHHhcCCCChhHHhHHHHHHHHHHHhcCcc-cccchHHH
Q 004950 422 -KQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGAS-VFPYLPKA 467 (722)
Q Consensus 422 -~~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~lg~~-v~p~lp~l 467 (722)
.++++.+..++. ..+..||+++..++..+....|.. +.|+++.+
T Consensus 189 ~~~iip~l~~~l~--D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 189 KDEVVPIVIQIVN--DTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp TTTHHHHHHHHHT--CSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred HHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 678888888885 889999999999999999999985 78877775
No 24
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.68 E-value=0.00054 Score=68.70 Aligned_cols=190 Identities=13% Similarity=0.115 Sum_probs=129.6
Q ss_pred ChhHHHHHHHHHHHhhHHHHhh-cCCChHHHHHHhccccCCC-CCCchhHHHHHHHHHHHHHHhhccchHHHHHHHHHhh
Q 004950 234 SNRLVALVYLETVTRYMKFIQE-HTQYIPVVLAAFLDERGIH-HPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQ 311 (722)
Q Consensus 234 ~hp~V~~~~~e~i~RY~~~~~~-~p~~L~~vL~~~l~~~Gl~-~~~~~V~~ra~ylf~r~~k~~r~~L~~~~~~il~~l~ 311 (722)
..+..|..+++.+.+..+--.. -+..+..+++.+. ..+. ++|.+||..|+.++..+++.++..+.+|++.++..+-
T Consensus 27 ~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~--~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll 104 (242)
T 2qk2_A 27 KKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALK--KVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLL 104 (242)
T ss_dssp SSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHH--HHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHH--HHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4578999999999887765211 1233467788887 6674 7899999999999999999999999999999998887
Q ss_pred hhhhhhccCCcccccCCCCchhhHHHHHHHHHHccCCCChhhhHHHHHHhHHHHHHHHHHHHHhhhccCCchhhhHHHhH
Q 004950 312 DTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANI 391 (722)
Q Consensus 312 ~ll~~~~~~~~~~~~~~~~~d~l~L~Eaig~Lis~~~~~~e~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~~ 391 (722)
..+.-+ +..-+-...+++..++...+ ++.+++.+.. .++.. +. .. -
T Consensus 105 ~~l~d~-----------~~~vr~~a~~aL~~~~~~~~---------~~~ll~~l~~----~l~~~----~~---~v---r 150 (242)
T 2qk2_A 105 EKFKEK-----------KPNVVTALREAIDAIYASTS---------LEAQQESIVE----SLSNK----NP---SV---K 150 (242)
T ss_dssp HGGGCC-----------CHHHHHHHHHHHHHHHTTSC---------HHHHHHHHHH----HTTCS----CH---HH---H
T ss_pred HHHcCC-----------CHHHHHHHHHHHHHHHHcCC---------HHHHHHHHHH----HHcCC----Ch---HH---H
Confidence 766311 12224466677777776532 2334443332 22211 10 11 1
Q ss_pred HHHHHHHHHhhhccCCCccCCCcchHHHHHHHHHHHHHHHHhcCCCChhHHhHHHHHHHHHHHhcCcc-cccchHHH
Q 004950 392 QQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGAS-VFPYLPKA 467 (722)
Q Consensus 392 ~~~i~~l~~lakgf~~~~~~~~~~~~~~~~~~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~lg~~-v~p~lp~l 467 (722)
..++.+++.+...+.+. ......+..+++.+..+++ ..+..||+++..++..+....|.. +.|+++.+
T Consensus 151 ~~~l~~l~~~l~~~~~~------~~~~~~l~~l~p~l~~~l~--D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L 219 (242)
T 2qk2_A 151 SETALFIARALTRTQPT------ALNKKLLKLLTTSLVKTLN--EPDPTVRDSSAEALGTLIKLMGDKAVTPLLADV 219 (242)
T ss_dssp HHHHHHHHHHHTTCCGG------GCCHHHHHHHHHHHHHHHT--SSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTS
T ss_pred HHHHHHHHHHHHHcCCC------CccHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHcCHHHHHHHHHhc
Confidence 35667777754444211 0124567789999999996 788999999999999999999986 66766653
No 25
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.55 E-value=0.022 Score=63.64 Aligned_cols=343 Identities=12% Similarity=0.054 Sum_probs=182.0
Q ss_pred ChhhHHHHHHHHHHhcccCchhhhh-cccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHh------hcCCCh
Q 004950 188 NVEEVEAALTLLYALGESMSEEAMR-TGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQ------EHTQYI 260 (722)
Q Consensus 188 ~W~~~EaaL~~l~~~gE~i~~~~~~-~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~------~~p~~L 260 (722)
++...+.|+.+|..++..-+..... -..+.++.++..| ..+++.|+..++++++..+.--. .....+
T Consensus 131 ~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL------~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l 204 (528)
T 4b8j_A 131 FPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL------GSSSDDVREQAVWALGNVAGDSPKCRDLVLANGAL 204 (528)
T ss_dssp CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT------TCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHh------cCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcH
Confidence 3888899999999999864322100 0113444444432 23678999999999998874311 123456
Q ss_pred HHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhhhhhhccCCcccccCCCCchhhHHHHHH
Q 004950 261 PVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAI 340 (722)
Q Consensus 261 ~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L~~~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~L~Eai 340 (722)
++++..+. .+++..++..++.++..+|......-......++..+-.++... ..+-+.....++
T Consensus 205 ~~Ll~lL~-----~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~-----------~~~v~~~a~~aL 268 (528)
T 4b8j_A 205 LPLLAQLN-----EHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSN-----------DEEVLTDACWAL 268 (528)
T ss_dssp HHHHHTCC-----TTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCC-----------CHHHHHHHHHHH
T ss_pred HHHHHHHh-----cCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCC-----------CHHHHHHHHHHH
Confidence 66665442 34678899999999999997542222223344444444444200 112233444455
Q ss_pred HHHHccCCCChhhhHHHHH-HhHHHHHHHHHHHHHhhhccCCchhhhHHHhHHHHHHHHHHhhhccCCCccCCCcchHHH
Q 004950 341 GLLIGMEDVPPEKQSDYLS-SLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGL 419 (722)
Q Consensus 341 g~Lis~~~~~~e~~~~~l~-~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~lakgf~~~~~~~~~~~~~~ 419 (722)
+.+... +.+.....++ .++++++.- +.. ++.. .....+.++++++.+-.. ....
T Consensus 269 ~~l~~~---~~~~~~~~~~~g~v~~Lv~l----L~~-----~~~~-----v~~~a~~~L~nl~~~~~~--------~~~~ 323 (528)
T 4b8j_A 269 SYLSDG---TNDKIQAVIEAGVCPRLVEL----LLH-----PSPS-----VLIPALRTVGNIVTGDDA--------QTQC 323 (528)
T ss_dssp HHHTSS---CHHHHHHHHHTTCHHHHHHH----TTC-----SCHH-----HHHHHHHHHHHHTTSCHH--------HHHH
T ss_pred HHHHcC---CHHHHHHHHHcCHHHHHHHH----HcC-----CChh-----HHHHHHHHHHHHHcCCHH--------HHHH
Confidence 554432 3433323322 344444332 211 1111 134677888888754321 1111
Q ss_pred HH-HHHHHHHHHHHhcCCC-ChhHHhHHHHHHHHHHHhcCccc-----ccchHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 004950 420 MF-KQTLDVLLQILVVFPK-VEPLRCKVTSFIHRMVDTLGASV-----FPYLPKALEQLLAESEPKEMAGFLVLLNQLIC 492 (722)
Q Consensus 420 ~~-~~~~~vi~~~l~~~~~-~~~Vre~~~~~~~r~v~~lg~~v-----~p~lp~li~~ll~~~~~~~~~~fL~~~~qli~ 492 (722)
++ ..+++.+..++. .. +..|+..++.++..+...-...+ ...+|.++..|- ..+..-....++.++.++.
T Consensus 324 ~~~~~~l~~L~~lL~--~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~aL~nl~~ 400 (528)
T 4b8j_A 324 IIDHQALPCLLSLLT--QNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQ-TAEFDIKKEAAWAISNATS 400 (528)
T ss_dssp HHTTTHHHHHHHHHH--SCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHH-HSCHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHc--CCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHh-cCCHHHHHHHHHHHHHHHc
Confidence 22 246788888887 44 78999999999999876322211 155677777443 3344334556778888776
Q ss_pred HHhhhHHH-HHHhhhHHHHHHHHhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCee-ecCCCCcCChHH
Q 004950 493 KFNTLVHD-ILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSV-FLSPKSRGYLDP 570 (722)
Q Consensus 493 ~f~~~~~~-~l~~ll~~l~~~v~~~l~~~~~~~~p~~~~d~~r~~~~l~r~y~~fl~~i~~~~~~~v-l~s~~~~~~l~~ 570 (722)
.-..+... +.+. ..+..+..+|... +++ +++.-+..+..++..+...- .......++...
T Consensus 401 ~~~~~~~~~l~~~---~~i~~L~~lL~~~--------d~~-------v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~ 462 (528)
T 4b8j_A 401 GGSHDQIKYLVSE---GCIKPLCDLLICP--------DIR-------IVTVCLEGLENILKVGETDKTLAAGDVNVFSQM 462 (528)
T ss_dssp HSCHHHHHHHHHT---TCHHHHHHGGGCS--------CHH-------HHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHH
T ss_pred CCCHHHHHHHHHC---CCHHHHHHHHcCC--------CHH-------HHHHHHHHHHHHHHHHHHhhhcccccccHHHHH
Confidence 52222222 2221 1333446667632 122 55556666666654331100 000000001111
Q ss_pred -----HHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 004950 571 -----IMQLLLYTSCNHKDYLVRKACVQIFIRLI 599 (722)
Q Consensus 571 -----~l~~l~~~~~~~~d~~~~k~a~~~l~~li 599 (722)
.+..+.. ...+.++...+.|..++.++.
T Consensus 463 i~~~~~~~~l~~-L~~~~~~~v~~~a~~il~~~~ 495 (528)
T 4b8j_A 463 IDEAEGLEKIEN-LQSHDNNEIYEKAVKILEAYW 495 (528)
T ss_dssp HHHTTHHHHHHH-GGGCSSHHHHHHHHHHHHHHC
T ss_pred HHHCCcHHHHHH-HHcCCCHHHHHHHHHHHHHHC
Confidence 1333333 356788899999999988755
No 26
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.49 E-value=0.00028 Score=70.78 Aligned_cols=157 Identities=14% Similarity=0.139 Sum_probs=106.7
Q ss_pred CChhhHHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhhc-CCChHHHHH
Q 004950 187 RNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEH-TQYIPVVLA 265 (722)
Q Consensus 187 ~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~~-p~~L~~vL~ 265 (722)
.+|.+...|+..+..+.++.+.-. ...+.+++..|... +...+|+.|+..++.+++..+.-+... ..|++.+++
T Consensus 27 ~~w~~R~~a~~~L~~l~~~~~~~~----~~~~~~i~~~L~~~-l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp 101 (242)
T 2qk2_A 27 KKWTLRKESLEVLEKLLTDHPKLE----NGEYGALVSALKKV-ITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVP 101 (242)
T ss_dssp SSHHHHHHHHHHHHHHHHHCSSBC----CCCCHHHHHHHHHH-HHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHccCCCCC----CCCHHHHHHHHHHH-hccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 789999999999999988865311 12345666655542 222578899999999999999776432 247778888
Q ss_pred HhccccCCCCCCchhHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhhhhhhccCCcccccCCCCchhhHHHHHHHHHHc
Q 004950 266 AFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIG 345 (722)
Q Consensus 266 ~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L~~~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~L~Eaig~Lis 345 (722)
.++ ..+.+++..||..++.++..+++.+. ++.++..+...+.-+ .+.-+......+|.+++
T Consensus 102 ~ll--~~l~d~~~~vr~~a~~aL~~~~~~~~------~~~ll~~l~~~l~~~-----------~~~vr~~~l~~l~~~l~ 162 (242)
T 2qk2_A 102 SLL--EKFKEKKPNVVTALREAIDAIYASTS------LEAQQESIVESLSNK-----------NPSVKSETALFIARALT 162 (242)
T ss_dssp HHH--HGGGCCCHHHHHHHHHHHHHHHTTSC------HHHHHHHHHHHTTCS-----------CHHHHHHHHHHHHHHHT
T ss_pred HHH--HHHcCCCHHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHcCC-----------ChHHHHHHHHHHHHHHH
Confidence 888 56668889999999999999988542 234444444333211 23346778888888777
Q ss_pred cCCCChh-hhHHHHHHhHHHHHHHH
Q 004950 346 MEDVPPE-KQSDYLSSLLTPLCQQV 369 (722)
Q Consensus 346 ~~~~~~e-~~~~~l~~ll~pl~~~l 369 (722)
..+ ++ .-..++..+++.+..-+
T Consensus 163 ~~~--~~~~~~~~l~~l~p~l~~~l 185 (242)
T 2qk2_A 163 RTQ--PTALNKKLLKLLTTSLVKTL 185 (242)
T ss_dssp TCC--GGGCCHHHHHHHHHHHHHHH
T ss_pred HcC--CCCccHHHHHHHHHHHHHHh
Confidence 642 32 23567777766666555
No 27
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.48 E-value=0.025 Score=68.40 Aligned_cols=379 Identities=9% Similarity=0.049 Sum_probs=185.0
Q ss_pred HHHHHHHHHHhhhcc-CCccchhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHcccCcccccCCccCCCCChh
Q 004950 64 LLNEVLPSVFYVMQN-CEVDTTFSIVQFLSGYVATMKSLSPLKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIE 142 (722)
Q Consensus 64 ~l~~~~plvL~~~~~-~d~~~~~~~~~F~~~~l~~lk~~~~l~~~~~~~l~~Ll~~li~km~yp~~~~~~~d~~~~~~~e 142 (722)
.+..+++++..+..+ .+.-+...++..+.+|.+.+.+.+ +++..+++.+++.+. |.-. ..
T Consensus 502 ~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~-------~~l~~vl~~l~~~l~-~~v~-----------~~ 562 (971)
T 2x1g_F 502 QIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENP-------AYIPPAINLLVRGLN-SSMS-----------AQ 562 (971)
T ss_dssp HHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----------CHHHHHHHHHHHHH-SSCH-----------HH
T ss_pred HHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCH-------HHHHHHHHHHHHHhC-hHHH-----------HH
Confidence 345566644333322 234445577777788887765422 456677777776662 1110 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHH---HHhcCCCCCChhhHHHHHHHHHHhcccCchhhhhc-ccccH
Q 004950 143 EEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLA---NAVTFSADRNVEEVEAALTLLYALGESMSEEAMRT-GAGHL 218 (722)
Q Consensus 143 de~~F~e~Rk~l~~ll~~i~~l~~~l~l~~i~~~l~---~~l~~~~~~~W~~~EaaL~~l~~~gE~i~~~~~~~-~~~~l 218 (722)
--..|..+-++.+ +.+..++..+++ +.+.+ +..+=.+.+..+-++..++..+++++... -...+
T Consensus 563 A~~al~~l~~~~~-----------~~l~p~~~~ll~~l~~~l~~-~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll 630 (971)
T 2x1g_F 563 ATLGLKELCRDCQ-----------LQLKPYADPLLNACHASLNT-GRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIV 630 (971)
T ss_dssp HHHHHHHHHHHCH-----------HHHHHHHHHHHHHHHHHHHS-TTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----------HhccccHHHHHHHHHHHHcC-CCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 1122222222222 222233333333 33333 22345677888888888887776332211 01222
Q ss_pred HhHHHHHHhCCCCCCC-hhHHHHHHHHHHHhhHHHHhh---c----------CC----ChHHHHHHhccccCCCCCCchh
Q 004950 219 SELVPMLLQTKLPCHS-NRLVALVYLETVTRYMKFIQE---H----------TQ----YIPVVLAAFLDERGIHHPNVHV 280 (722)
Q Consensus 219 ~~l~~~l~~~~i~~~~-hp~V~~~~~e~i~RY~~~~~~---~----------p~----~L~~vL~~~l~~~Gl~~~~~~V 280 (722)
+.++..+.+. ..+.. .+.-+....+.+++.+..+.. . ++ +.+.+++.+..-..-...+..|
T Consensus 631 ~~l~~~l~~~-~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v 709 (971)
T 2x1g_F 631 SPCFEELQAI-CQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDV 709 (971)
T ss_dssp HHHHHHHHHH-HTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHH-HhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHH
Confidence 2333322221 01110 122334444555555554441 1 11 2233333332000112245679
Q ss_pred HHHHHHHHHHHHHHhhccchHHHHHHHHHhhhhhhhhccCCcccccCCCCchhhHHHHHHHHHHccCCCChhhhHHHHHH
Q 004950 281 SRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSS 360 (722)
Q Consensus 281 ~~ra~ylf~r~~k~~r~~L~~~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~L~Eaig~Lis~~~~~~e~~~~~l~~ 360 (722)
..++|.++.++++.++..+.||++++++.+-..+.. .+ .....+.+|.++...+.+ +.....+..
T Consensus 710 ~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~-------------~~-~~~~l~l~~~~i~~~~~~-~~~~~~l~~ 774 (971)
T 2x1g_F 710 LEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQT-------------RC-CAPTLEISKTAIVMFFKD-EGCKPLMQQ 774 (971)
T ss_dssp HHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC---------------C-CHHHHHHHHHHHTTCCC------HHHHH
T ss_pred HHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhc-------------CC-chHHHHHHHHHHHHhCCC-cchHHHHHH
Confidence 999999999999999999999999999887654321 11 123567888888876532 234556667
Q ss_pred hHHHHHHHHHHHHHhhhccCCchhhhHHHhHHHHHHHHHHhhhccCCCccCCCcchHHHH-HHHHHHHHHHHHhcCCCCh
Q 004950 361 LLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLM-FKQTLDVLLQILVVFPKVE 439 (722)
Q Consensus 361 ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~lakgf~~~~~~~~~~~~~~~-~~~~~~vi~~~l~~~~~~~ 439 (722)
++.+++..+-..+++.. +++..+.. .-.......++++.+..+..-... .. +..+++..+.++. ..+.
T Consensus 775 ~~~~~~~~~~~~l~~~~-~~~~~~~p--d~~~~~f~ll~~~l~~~p~~~~~s------~~~l~~i~~~~~~~l~--~~~~ 843 (971)
T 2x1g_F 775 LLREFIQHSFKLFESTP-EQNFSNIS--DTMETFFGCLTQIIKKIPQVLEDK------TLAYDRLVFYAQRGMT--LPES 843 (971)
T ss_dssp HHHHHHHHHHHHHTSCT-TTHHHHTH--HHHHHHHHHHHHHHHSSGGGGGCT------TSCHHHHHHHHHHHHT--SSCS
T ss_pred HHHHHHHHHHHHHhccc-ccCCccCc--hHHHHHHHHHHHHHHhCcHHHcCC------cccHHHHHHHHHHHcC--CCCH
Confidence 77776666655554320 00000101 113445555566555433211111 23 5667777777776 3455
Q ss_pred hHHhHHHHHHHHHHHhc--Ccc----cccchHHHHHHHHhc----CChhhHHHHHHHHHHHHHHHhhhHHH
Q 004950 440 PLRCKVTSFIHRMVDTL--GAS----VFPYLPKALEQLLAE----SEPKEMAGFLVLLNQLICKFNTLVHD 500 (722)
Q Consensus 440 ~Vre~~~~~~~r~v~~l--g~~----v~p~lp~li~~ll~~----~~~~~~~~fL~~~~qli~~f~~~~~~ 500 (722)
....+++.+|.+++..- +.. +.++.+.++..++.. .....+.++-.++..++.+++.++.+
T Consensus 844 ~~~~s~~~fl~~~i~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~s~~~~~a~~l~~l~~~~~~~~~~ 914 (971)
T 2x1g_F 844 GAIRNSIQFLTHFVMQSRNHAHVTEVVLATGEQTLYTAMMCVGYLTPRSQVDKFADILLAMNRKYAAEMAV 914 (971)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGGGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHhHHHHHHHHHHHhcccCChhHHHHHHHHHHHHHHHCcHHHHH
Confidence 56667888888877663 121 234445555555442 22234445555667777777655444
No 28
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=97.48 E-value=0.083 Score=60.12 Aligned_cols=363 Identities=13% Similarity=0.166 Sum_probs=191.9
Q ss_pred HHHHHHHHHHHHHHcChhhHHH-HHHHHHHHHhcCCCCCChhhHHHHHHHHHHhcccCchhh-hhcccccHHhHHHHHHh
Q 004950 150 YRKDLLVLLRSVGRVAPEVTQV-FIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEA-MRTGAGHLSELVPMLLQ 227 (722)
Q Consensus 150 ~Rk~l~~ll~~i~~l~~~l~l~-~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~~gE~i~~~~-~~~~~~~l~~l~~~l~~ 227 (722)
.||.....+..++..+|+.+-. -..+.+.+.+.. .+.....+|+.+++.+++.-+... ..-....+..++..+..
T Consensus 137 VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d---~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~ 213 (591)
T 2vgl_B 137 VRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIAD---SNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNE 213 (591)
T ss_dssp HHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSC---SCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCC---CChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCC
Confidence 7888888888888888886642 233555556543 567888999999988877543210 00001224444444432
Q ss_pred CCCCCCChhHHHHHHHHHHHhhHHHHhhcCCChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHh--hccc-hHHHH
Q 004950 228 TKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLL--KAKL-VPFIE 304 (722)
Q Consensus 228 ~~i~~~~hp~V~~~~~e~i~RY~~~~~~~p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~--r~~L-~~~~~ 304 (722)
.+|-.+...+.++++|.. ..++....+++.++ ..++|+++.|+..|+.++..+...+ .+.+ ...+.
T Consensus 214 ------~~~~~q~~il~~l~~l~~---~~~~~~~~~l~~l~--~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~ 282 (591)
T 2vgl_B 214 ------CTEWGQIFILDCLSNYNP---KDDREAQSICERVT--PRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLK 282 (591)
T ss_dssp ------CCHHHHHHHHHHHHTSCC---CSHHHHHHHHHHHT--TCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHH
T ss_pred ------CCchHHHHHHHHHHHhCC---CChHHHHHHHHHHH--HHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHH
Confidence 346788888888888862 23345677888888 6788899999999988887765322 1111 11112
Q ss_pred HHHHHhhhhhhhhccCCcccccCCCCchhhHHHHHHHHHHccCC---------------CChhhhHHHHHHh--------
Q 004950 305 NILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMED---------------VPPEKQSDYLSSL-------- 361 (722)
Q Consensus 305 ~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~L~Eaig~Lis~~~---------------~~~e~~~~~l~~l-------- 361 (722)
.+...+..++. . .++-+.-..++++.++.... -|..-+...++.+
T Consensus 283 ~~~~~L~~L~~--~----------d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~n 350 (591)
T 2vgl_B 283 KLAPPLVTLLS--G----------EPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQAN 350 (591)
T ss_dssp HTHHHHHHHTT--S----------CHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSST
T ss_pred HHHHHHHHHhc--C----------CccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhh
Confidence 22211111111 0 11123333344444433100 0011112222211
Q ss_pred HHHHHHHHHHHHHhhhccCCchhhhHHHhHHHHHHHHHHhhhccCCCccCCCcchHHHHHHHHHHHHHHHHhcCCCChhH
Q 004950 362 LTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPL 441 (722)
Q Consensus 362 l~pl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~lakgf~~~~~~~~~~~~~~~~~~~~~vi~~~l~~~~~~~~V 441 (722)
+..++..+...+.. .+. + . ...++.+||.++..|+ .....++++++..+. ...+.|
T Consensus 351 v~~iv~~L~~~l~~----~d~-~-~----r~~~v~aI~~la~~~~------------~~~~~~v~~Ll~ll~--~~~~~v 406 (591)
T 2vgl_B 351 IAQVLAELKEYATE----VDV-D-F----VRKAVRAIGRCAIKVE------------QSAERCVSTLLDLIQ--TKVNYV 406 (591)
T ss_dssp HHHHHHHHHHHTTS----SCH-H-H----HHHHHHHHHHHHTTCH------------HHHHHHHHHHHHHHH--TCCHHH
T ss_pred HHHHHHHHHHHHhc----CCH-H-H----HHHHHHHHHHHHHhCh------------hHHHHHHHHHHHHHc--ccchHH
Confidence 12333344333311 111 1 1 2456788888887654 234456677777776 455667
Q ss_pred HhHHHHHHHHHHHhcCcccccchHHHHHHHHhcCC-hhhHHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHhhccCC
Q 004950 442 RCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESE-PKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRD 520 (722)
Q Consensus 442 re~~~~~~~r~v~~lg~~v~p~lp~li~~ll~~~~-~~~~~~fL~~~~qli~~f~~~~~~~l~~ll~~l~~~v~~~l~~~ 520 (722)
++.+...++.++...+......++.++.. +...+ +.-....+|++|+..+...+ ... ++. .+ ++..
T Consensus 407 ~~e~i~~l~~ii~~~p~~~~~~v~~L~~~-l~~~~~~~~~~~~~wilGey~~~~~~-~~~----~l~----~l---~~~~ 473 (591)
T 2vgl_B 407 VQEAIVVIRDIFRKYPNKYESIIATLCEN-LDSLDEPDARAAMIWIVGEYAERIDN-ADE----LLE----SF---LEGF 473 (591)
T ss_dssp HHHHHHHHHHHHHHSCSSCCTTHHHHHHT-TTTCCSHHHHHHHHHHHHTTCTTCTT-HHH----HHH----HH---STTC
T ss_pred HHHHHHHHHHHHHHCcchHHHHHHHHHHH-HHhccCHHHHHHHHHHHHcccccccC-HHH----HHH----HH---HHhh
Confidence 77777778888776654333445555553 33333 23346677888876544332 111 222 22 2211
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeeecCCCCcCChHHHHHHHHHhh-cCCCchHHHHHHHHHHHH
Q 004950 521 AFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTS-CNHKDYLVRKACVQIFIR 597 (722)
Q Consensus 521 ~~~~~p~~~~d~~r~~~~l~r~y~~fl~~i~~~~~~~vl~s~~~~~~l~~~l~~l~~~~-~~~~d~~~~k~a~~~l~~ 597 (722)
... +. .++...++-+..+..+.+. .....+..++..+ .+..|+..+.-|..++.-
T Consensus 474 -----~~~-~~------~vr~~~l~a~~Kl~~~~p~----------~~~~~i~~ll~~~~~d~~d~evrdRA~~y~~l 529 (591)
T 2vgl_B 474 -----HDE-ST------QVQLTLLTAIVKLFLKKPS----------ETQELVQQVLSLATQDSDNPDLRDRGYIYWRL 529 (591)
T ss_dssp -----SSS-CH------HHHHHHHHHHHHHHTTCCS----------TTHHHHHHHHHHHHTTCCCHHHHHHHHHHHTT
T ss_pred -----ccC-CH------HHHHHHHHHHHHHHhcCch----------HHHHHHHHHHHHhhhcCCChHHHHHHHHHHHH
Confidence 011 11 2677777777777765542 1123344444333 466888888888877653
No 29
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.46 E-value=0.0098 Score=64.65 Aligned_cols=312 Identities=10% Similarity=0.060 Sum_probs=163.4
Q ss_pred HHHHHhhhccCCccchhhHHHHHHHHHHHhccCCCChHHHHHHHH--HHHHHHHHHcccCcccccCCccCCCCChhHHHH
Q 004950 69 LPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLSPLKEEQRLHAG--QILEVILTQIRYDPMYRNNLDVLDKIGIEEEDR 146 (722)
Q Consensus 69 ~plvL~~~~~~d~~~~~~~~~F~~~~l~~lk~~~~l~~~~~~~l~--~Ll~~li~km~yp~~~~~~~d~~~~~~~ede~~ 146 (722)
+|.++..+.++|.++...+...+..++.... .+.. ...+. .++..+++-++-++ +
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~-~~~~----~~~~~~~~~i~~L~~~L~~~~--------------~---- 78 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEP-NPPI----DEVISTPGVVARFVEFLKRKE--------------N---- 78 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSS-SCCH----HHHHTSTTHHHHHHHHHTCTT--------------C----
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC-CCcH----HHHHHcCCcHHHHHHHHCCCC--------------C----
Confidence 5666677766666665566666655543211 1111 11222 34555555454211 0
Q ss_pred HHHHHHHHHHHHHHHHHcChhhHHHH----HHHHHHHHhcCCCCCChhhHHHHHHHHHHhcccCchhhhh-cccccHHhH
Q 004950 147 MVEYRKDLLVLLRSVGRVAPEVTQVF----IRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMR-TGAGHLSEL 221 (722)
Q Consensus 147 F~e~Rk~l~~ll~~i~~l~~~l~l~~----i~~~l~~~l~~~~~~~W~~~EaaL~~l~~~gE~i~~~~~~-~~~~~l~~l 221 (722)
.+.|......+.+++.-.++....+ +-+.+.+.+.+ .++...|.|+.+|+.++..-+..... -..+.++.+
T Consensus 79 -~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~---~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L 154 (450)
T 2jdq_A 79 -CTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSS---EFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPL 154 (450)
T ss_dssp -HHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTC---SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHH
T ss_pred -HHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcC---CCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHH
Confidence 1256666666666665444322221 22333334433 57888999999999998864321100 012345545
Q ss_pred HHHHHhCCCCCCChhHHHHHHHHHHHhhHHHH-hh-cCCChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhh---
Q 004950 222 VPMLLQTKLPCHSNRLVALVYLETVTRYMKFI-QE-HTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLK--- 296 (722)
Q Consensus 222 ~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~-~~-~p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r--- 296 (722)
+..+- ..+++.||..+.++++..+..- .. ....+..+++.++ .-+.+++..++..++.++.+++....
T Consensus 155 ~~~l~-----~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~--~~l~~~~~~v~~~a~~~L~~l~~~~~~~~ 227 (450)
T 2jdq_A 155 LQLFS-----KQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLS--WLLFVSDTDVLADACWALSYLSDGPNDKI 227 (450)
T ss_dssp HHHTT-----SCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHH--HHTTCCCHHHHHHHHHHHHHHTSSSHHHH
T ss_pred HHHhc-----CCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHH--HHHccCCHHHHHHHHHHHHHHHCCCcHHH
Confidence 44432 2356789999999999887542 10 1112233344443 23346678899999999999986321
Q ss_pred ccch--HHHHHHHHHhhhhhhhhccCCcccccCCCCchhhHHHHHHHHHHccCCCChhhhHHHHH-HhHHHHHHHHHHHH
Q 004950 297 AKLV--PFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLS-SLLTPLCQQVQTML 373 (722)
Q Consensus 297 ~~L~--~~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~L~Eaig~Lis~~~~~~e~~~~~l~-~ll~pl~~~l~~~~ 373 (722)
..+. +.++.++..+.+ . ..+-+.....++|.+... +++.....++ .+++ .+.+.+
T Consensus 228 ~~~~~~~~i~~L~~ll~~----~-----------~~~v~~~a~~~L~~l~~~---~~~~~~~~~~~~~l~----~L~~ll 285 (450)
T 2jdq_A 228 QAVIDAGVCRRLVELLMH----N-----------DYKVVSPALRAVGNIVTG---DDIQTQVILNCSALQ----SLLHLL 285 (450)
T ss_dssp HHHHHTTTHHHHHHHTTC----S-----------CHHHHHHHHHHHHHHTTS---CHHHHHHHHTTTHHH----HHHHHT
T ss_pred HHHHHcCcHHHHHHHHCC----C-----------chhHHHHHHHHHHHHhhC---ChHHHHHHHHCccHH----HHHHHH
Confidence 1111 133333332211 0 112234455566665543 3332222222 2333 333333
Q ss_pred HhhhccCCchhhhHHHhHHHHHHHHHHhhhccCCCccCCCcchHHHHH-HHHHHHHHHHHhcCCCChhHHhHHHHHHHHH
Q 004950 374 LDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMF-KQTLDVLLQILVVFPKVEPLRCKVTSFIHRM 452 (722)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~i~~l~~lakgf~~~~~~~~~~~~~~~~-~~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~ 452 (722)
+. +.... ....+.++++++.|-+. ....++ ..+++.+...+. ..+..||..++.++..+
T Consensus 286 ~~-----~~~~v-----r~~a~~~L~~l~~~~~~--------~~~~~~~~~~l~~L~~~l~--~~~~~v~~~a~~~L~~l 345 (450)
T 2jdq_A 286 SS-----PKESI-----KKEACWTISNITAGNRA--------QIQTVIDANIFPALISILQ--TAEFRTRKEAAWAITNA 345 (450)
T ss_dssp TC-----SSHHH-----HHHHHHHHHHHTTSCHH--------HHHHHHHTTHHHHHHHHHH--HSCHHHHHHHHHHHHHH
T ss_pred cC-----CCHHH-----HHHHHHHHHHHHcCCHH--------HHHHHHHCCCHHHHHHHHh--cCCHHHHHHHHHHHHHH
Confidence 21 11111 24678888888764321 122223 257888888887 46789999999999999
Q ss_pred HHhc
Q 004950 453 VDTL 456 (722)
Q Consensus 453 v~~l 456 (722)
+...
T Consensus 346 ~~~~ 349 (450)
T 2jdq_A 346 TSGG 349 (450)
T ss_dssp HHHC
T ss_pred HcCC
Confidence 8753
No 30
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.45 E-value=0.0095 Score=66.69 Aligned_cols=339 Identities=12% Similarity=0.115 Sum_probs=183.3
Q ss_pred CChhhHHHHHHHHHHhcccCchhhhh--cccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhhc------CC
Q 004950 187 RNVEEVEAALTLLYALGESMSEEAMR--TGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEH------TQ 258 (722)
Q Consensus 187 ~~W~~~EaaL~~l~~~gE~i~~~~~~--~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~~------p~ 258 (722)
.++.....|+..++.+...-+..... -..+.++.++..|-. ..+|.++..+++.++..+..-..+ ..
T Consensus 86 ~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~-----~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g 160 (528)
T 4b8j_A 86 DDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTR-----EDFPQLQFEAAWALTNIASGTSENTKVVIDHG 160 (528)
T ss_dssp SCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTC-----TTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCC-----CCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCC
Confidence 46888888889998885543211100 113556666665532 123789999999999888742221 23
Q ss_pred ChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHH---hhccchH--HHHHHHHHhhhhhhhhccCCcccccCCCCchh
Q 004950 259 YIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKL---LKAKLVP--FIENILQSLQDTIARFTSMNYASKELSGSEDG 333 (722)
Q Consensus 259 ~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~---~r~~L~~--~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~ 333 (722)
.+|..+.. +.++++.||..|+.++.+++.. ++..+.. .++.++..+.. . . +.+-+
T Consensus 161 ~i~~L~~l------L~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~----~-----~-----~~~v~ 220 (528)
T 4b8j_A 161 AVPIFVKL------LGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNE----H-----T-----KLSML 220 (528)
T ss_dssp HHHHHHHH------TTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCT----T-----C-----CHHHH
T ss_pred cHHHHHHH------hcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhc----C-----C-----CHHHH
Confidence 44444443 3456889999999999999964 3444432 34444333311 0 0 12224
Q ss_pred hHHHHHHHHHHccCCCChhhhHHHHHHhHHHHHHHHHHHHHhhhccCCchhhhHHHhHHHHHHHHHHhhhccCCCccCCC
Q 004950 334 SHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSS 413 (722)
Q Consensus 334 l~L~Eaig~Lis~~~~~~e~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~lakgf~~~~~~~~ 413 (722)
.....+++.|.... +.........++++++. .+.. .+. . .....+.+++.++.+-..
T Consensus 221 ~~a~~~L~~L~~~~---~~~~~~~~~~~l~~L~~----lL~~----~~~---~---v~~~a~~aL~~l~~~~~~------ 277 (528)
T 4b8j_A 221 RNATWTLSNFCRGK---PQPSFEQTRPALPALAR----LIHS----NDE---E---VLTDACWALSYLSDGTND------ 277 (528)
T ss_dssp HHHHHHHHHHHCSS---SCCCHHHHTTHHHHHHH----HTTC----CCH---H---HHHHHHHHHHHHTSSCHH------
T ss_pred HHHHHHHHHHHcCC---CCCcHHHHHHHHHHHHH----HHCC----CCH---H---HHHHHHHHHHHHHcCCHH------
Confidence 45555666666542 22333343444444443 3321 111 1 135677788887644221
Q ss_pred cchHHHHHH-HHHHHHHHHHhcCCCChhHHhHHHHHHHHHHHhcCcc---c--ccchHHHHHHHHhcC-ChhhHHHHHHH
Q 004950 414 RPAIGLMFK-QTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGAS---V--FPYLPKALEQLLAES-EPKEMAGFLVL 486 (722)
Q Consensus 414 ~~~~~~~~~-~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~lg~~---v--~p~lp~li~~ll~~~-~~~~~~~fL~~ 486 (722)
....+.. .+++.+..++. ..+..|+..+..+++.++..-... + ...+|.++.. +... +..-....+|.
T Consensus 278 --~~~~~~~~g~v~~Lv~lL~--~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~l-L~~~~~~~v~~~A~~~ 352 (528)
T 4b8j_A 278 --KIQAVIEAGVCPRLVELLL--HPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSL-LTQNLKKSIKKEACWT 352 (528)
T ss_dssp --HHHHHHHTTCHHHHHHHTT--CSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHH-HHSCCCHHHHHHHHHH
T ss_pred --HHHHHHHcCHHHHHHHHHc--CCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHH-HcCCCcHHHHHHHHHH
Confidence 1111221 36777777776 556899999999999887632211 1 1345666664 4443 44444567788
Q ss_pred HHHHHHHHhhhHHHHHH-hhhHHHHHHHHhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeeecCCCCc
Q 004950 487 LNQLICKFNTLVHDILD-EVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSR 565 (722)
Q Consensus 487 ~~qli~~f~~~~~~~l~-~ll~~l~~~v~~~l~~~~~~~~p~~~~d~~r~~~~l~r~y~~fl~~i~~~~~~~vl~s~~~~ 565 (722)
++.+...-...+..+++ .+++ .+..+|... +++ +++.-...+..+...+-......-...
T Consensus 353 L~nl~~~~~~~~~~~~~~~~i~----~L~~lL~~~--------~~~-------v~~~a~~aL~nl~~~~~~~~~~~l~~~ 413 (528)
T 4b8j_A 353 ISNITAGNKDQIQAVINAGIIG----PLVNLLQTA--------EFD-------IKKEAAWAISNATSGGSHDQIKYLVSE 413 (528)
T ss_dssp HHHHHTSCHHHHHHHHHTTCHH----HHHHHHHHS--------CHH-------HHHHHHHHHHHHHHHSCHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHCCCHH----HHHHHHhcC--------CHH-------HHHHHHHHHHHHHcCCCHHHHHHHHHC
Confidence 88887532222333333 2333 335555531 112 566666666666654211100000001
Q ss_pred CChHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHh
Q 004950 566 GYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDW 602 (722)
Q Consensus 566 ~~l~~~l~~l~~~~~~~~d~~~~k~a~~~l~~li~~~ 602 (722)
+ ++..++. .+...|+..+..|+..+.+++...
T Consensus 414 ~----~i~~L~~-lL~~~d~~v~~~al~~L~~l~~~~ 445 (528)
T 4b8j_A 414 G----CIKPLCD-LLICPDIRIVTVCLEGLENILKVG 445 (528)
T ss_dssp T----CHHHHHH-GGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred C----CHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHH
Confidence 1 2334444 345589999999999999998543
No 31
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.38 E-value=0.011 Score=67.77 Aligned_cols=161 Identities=14% Similarity=0.093 Sum_probs=95.5
Q ss_pred cChhhHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhCCCCCCChhHHHHHHH
Q 004950 164 VAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYL 243 (722)
Q Consensus 164 l~~~l~l~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~ 243 (722)
-+++...-.+. .+.+-+.+ .+-...-.||.+|..++. ++ ..+.+++.+.. ...++||.||.++.
T Consensus 100 ~~~e~~~l~in-~l~kDL~~---~n~~vr~lAL~~L~~i~~---~~-------~~~~l~~~l~~--~L~~~~~~VRk~A~ 163 (618)
T 1w63_A 100 ERQDVHLLMTN-CIKNDLNH---STQFVQGLALCTLGCMGS---SE-------MCRDLAGEVEK--LLKTSNSYLRKKAA 163 (618)
T ss_dssp CCHHHHHHHHH-HHHHHHSC---SSSHHHHHHHHHHHHHCC---HH-------HHHHHHHHHHH--HHHSCCHHHHHHHH
T ss_pred CCcHHHHHHHH-HHHHhcCC---CCHhHHHHHHHHHHhcCC---HH-------HHHHHHHHHHH--HHcCCCHHHHHHHH
Confidence 35654443333 34434443 445566888888888873 22 22333443332 12347899999999
Q ss_pred HHHHhhHHHHhhcCCChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhh---ccchHHHHHHHHHhhhhhhhhccC
Q 004950 244 ETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLK---AKLVPFIENILQSLQDTIARFTSM 320 (722)
Q Consensus 244 e~i~RY~~~~~~~p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r---~~L~~~~~~il~~l~~ll~~~~~~ 320 (722)
..+++.++. +|+.++..++.+. ..+.++++.|+..|..++..+++.-. ..+.+.++.++..+.++...+...
T Consensus 164 ~al~~l~~~---~p~~v~~~~~~l~--~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~ 238 (618)
T 1w63_A 164 LCAVHVIRK---VPELMEMFLPATK--NLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSP 238 (618)
T ss_dssp HHHHHHHHH---CGGGGGGGGGGTT--TSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCT
T ss_pred HHHHHHHHH---ChHHHHHHHHHHH--HHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 999988874 6888877777776 67778999999999999999885322 233344566666665554322111
Q ss_pred CcccccCCCCchhhHHHHHHHHHHc
Q 004950 321 NYASKELSGSEDGSHIFEAIGLLIG 345 (722)
Q Consensus 321 ~~~~~~~~~~~d~l~L~Eaig~Lis 345 (722)
++.-....++--|..+.+.+|.+..
T Consensus 239 ~~~~~~~~~~~~q~~il~~L~~l~~ 263 (618)
T 1w63_A 239 EHDVSGISDPFLQVRILRLLRILGR 263 (618)
T ss_dssp TTCSSSSSCHHHHHHHHHHHHHHTT
T ss_pred cccccCCCCChHHHHHHHHHHHhCC
Confidence 1100001112235666777776654
No 32
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.27 E-value=0.032 Score=62.49 Aligned_cols=343 Identities=11% Similarity=0.059 Sum_probs=184.8
Q ss_pred ChhhHHHHHHHHHHhcccCchhhhh-cccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHh------hcCCCh
Q 004950 188 NVEEVEAALTLLYALGESMSEEAMR-TGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQ------EHTQYI 260 (722)
Q Consensus 188 ~W~~~EaaL~~l~~~gE~i~~~~~~-~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~------~~p~~L 260 (722)
+|...+.|+.+|..++..-+..... -..+.++.++..|-. +++.||..++++++..+.--. .....+
T Consensus 144 ~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~------~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l 217 (530)
T 1wa5_B 144 PEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT------GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAM 217 (530)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHH------CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcC------CCHHHHHHHHHHHHHHhCCCccchHHHHHcCcH
Confidence 7888999999999998864322100 012456666666543 467899999999998874311 124567
Q ss_pred HHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhhccc-hHHHHHHHHHhhhhhhhhccCCcccccCCCCchhhHHHHH
Q 004950 261 PVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKL-VPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEA 339 (722)
Q Consensus 261 ~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L-~~~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~L~Ea 339 (722)
++++..+- +++..|+..++.++..+|+...+.. ......++..+-.++... ..+-+.....+
T Consensus 218 ~~L~~ll~------~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~-----------d~~v~~~a~~~ 280 (530)
T 1wa5_B 218 EPILGLFN------SNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM-----------DTETLVDACWA 280 (530)
T ss_dssp HHHHHGGG------SCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCC-----------CHHHHHHHHHH
T ss_pred HHHHHHhc------cCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCC-----------CHHHHHHHHHH
Confidence 77766554 2677899999999999996531211 223333444444433200 11223445556
Q ss_pred HHHHHccCCCChhhhHHHHH-HhHHHHHHHHHHHHHhhhccCCchhhhHHHhHHHHHHHHHHhhhccCCCccCCCcchHH
Q 004950 340 IGLLIGMEDVPPEKQSDYLS-SLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIG 418 (722)
Q Consensus 340 ig~Lis~~~~~~e~~~~~l~-~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~lakgf~~~~~~~~~~~~~ 418 (722)
++.|... +++.....++ .+++.++. .+.. .+ .. .....+.+++.++.+-+. ...
T Consensus 281 L~~L~~~---~~~~~~~~~~~~~v~~Lv~----lL~~----~~-~~-----v~~~a~~~L~~l~~~~~~--------~~~ 335 (530)
T 1wa5_B 281 ISYLSDG---PQEAIQAVIDVRIPKRLVE----LLSH----ES-TL-----VQTPALRAVGNIVTGNDL--------QTQ 335 (530)
T ss_dssp HHHHHSS---CHHHHHHHHHTTCHHHHHH----GGGC----SC-HH-----HHHHHHHHHHHHTTSCHH--------HHH
T ss_pred HHHHhCC---CHHHHHHHHhcCcHHHHHH----HHCC----CC-hh-----hHHHHHHHHHHHHcCCHH--------HHH
Confidence 6666543 3433333333 33333333 2221 11 11 134667788888754321 011
Q ss_pred HHH-HHHHHHHHHHHhcCCCChhHHhHHHHHHHHHHHhcCccc-----ccchHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 004950 419 LMF-KQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASV-----FPYLPKALEQLLAESEPKEMAGFLVLLNQLIC 492 (722)
Q Consensus 419 ~~~-~~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~lg~~v-----~p~lp~li~~ll~~~~~~~~~~fL~~~~qli~ 492 (722)
.++ ..+++.+..++. ..+..||..++.++..+.......+ ...+|.++..| ...+..-....+|.++.++.
T Consensus 336 ~~~~~~~l~~L~~lL~--~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~aL~~l~~ 412 (530)
T 1wa5_B 336 VVINAGVLPALRLLLS--SPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLL-EVAEYKTKKEACWAISNASS 412 (530)
T ss_dssp HHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHH-HHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHcchHHHHHHHHc--CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH-hcCCHHHHHHHHHHHHHHHh
Confidence 122 247778888777 4578999999999998875322211 24567777644 43444334567788888877
Q ss_pred HHhh--h-HHHHHHhhhHHHHHHHHhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeeec-CCCCcCCh
Q 004950 493 KFNT--L-VHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFL-SPKSRGYL 568 (722)
Q Consensus 493 ~f~~--~-~~~~l~~ll~~l~~~v~~~l~~~~~~~~p~~~~d~~r~~~~l~r~y~~fl~~i~~~~~~~vl~-s~~~~~~l 568 (722)
.... + ...+... .++..+..++... +++ +++.-+..+..++..+....-. .....++.
T Consensus 413 ~~~~~~~~~~~l~~~---~~l~~L~~ll~~~--------~~~-------v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~ 474 (530)
T 1wa5_B 413 GGLQRPDIIRYLVSQ---GCIKPLCDLLEIA--------DNR-------IIEVTLDALENILKMGEADKEARGLNINENA 474 (530)
T ss_dssp HTTTCTHHHHHHHHT---TCHHHHHHHTTTC--------CHH-------HHHHHHHHHHHHHHHHHHHHHHHTCSSCHHH
T ss_pred cCCCcHHHHHHHHHC---CCHHHHHHHHhCC--------CHH-------HHHHHHHHHHHHHHhhhhhhhcccccccHHH
Confidence 5443 2 2222221 1333445666531 222 5555555555555432110000 00000111
Q ss_pred HH-----HHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 004950 569 DP-----IMQLLLYTSCNHKDYLVRKACVQIFIRLIK 600 (722)
Q Consensus 569 ~~-----~l~~l~~~~~~~~d~~~~k~a~~~l~~li~ 600 (722)
.. .+..+.. ...++++..++.|..++.++..
T Consensus 475 ~~l~~~g~~~~L~~-L~~~~~~~v~~~a~~il~~~~~ 510 (530)
T 1wa5_B 475 DFIEKAGGMEKIFN-CQQNENDKIYEKAYKIIETYFG 510 (530)
T ss_dssp HHHHHTTHHHHHHG-GGGCSCHHHHHHHHHHHHHHSS
T ss_pred HHHHHcCcHHHHHH-HHcCCCHHHHHHHHHHHHHHCC
Confidence 11 2334443 4567888899999999887663
No 33
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.19 E-value=0.07 Score=57.78 Aligned_cols=314 Identities=11% Similarity=0.038 Sum_probs=169.0
Q ss_pred HHHHHHHhhhccC-CccchhhHHHHHHHHHHHhccCCCChHHHHHHH-HHHHHHHHHHcccCcccccCCccCCCCChhHH
Q 004950 67 EVLPSVFYVMQNC-EVDTTFSIVQFLSGYVATMKSLSPLKEEQRLHA-GQILEVILTQIRYDPMYRNNLDVLDKIGIEEE 144 (722)
Q Consensus 67 ~~~plvL~~~~~~-d~~~~~~~~~F~~~~l~~lk~~~~l~~~~~~~l-~~Ll~~li~km~yp~~~~~~~d~~~~~~~ede 144 (722)
+++|.++.++.++ +.++...+...+..+... . .+....+. ..++..+++-++-+ + .
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~---~---~~~~~~~~~~~~i~~L~~lL~~~--------------~-~- 121 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASG---N---SLQTRIVIQAGAVPIFIELLSSE--------------F-E- 121 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSS---C---HHHHHHHHHTTHHHHHHHHTTCS--------------C-H-
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcC---C---HHHHHHHHhCCCHHHHHHHHcCC--------------C-H-
Confidence 6888899999887 566655666666665521 0 11111111 23555666555421 0 1
Q ss_pred HHHHHHHHHHHHHHHHHHHcChhhHHHH----HHHHHHHHhcCCCCCChhhHHHHHHHHHHhcccC-chhhhhcccccHH
Q 004950 145 DRMVEYRKDLLVLLRSVGRVAPEVTQVF----IRNSLANAVTFSADRNVEEVEAALTLLYALGESM-SEEAMRTGAGHLS 219 (722)
Q Consensus 145 ~~F~e~Rk~l~~ll~~i~~l~~~l~l~~----i~~~l~~~l~~~~~~~W~~~EaaL~~l~~~gE~i-~~~~~~~~~~~l~ 219 (722)
+.|......+.+++.-.++....+ +-+.+.+.+.+ ..+|...+.++.+++.++..- +..........++
T Consensus 122 ----~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~ 195 (450)
T 2jdq_A 122 ----DVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSK--QNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLN 195 (450)
T ss_dssp ----HHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTS--CCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHH
T ss_pred ----HHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 356666666666665544321111 12333334432 357999999999999999765 2211111123444
Q ss_pred hHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHh------hcCCChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHH
Q 004950 220 ELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQ------EHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVK 293 (722)
Q Consensus 220 ~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~------~~p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k 293 (722)
.++..+ ..+.+.++..++++++..+..-. .....+|.++..+ .+++..||..|+.++..++.
T Consensus 196 ~L~~~l------~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll------~~~~~~v~~~a~~~L~~l~~ 263 (450)
T 2jdq_A 196 VLSWLL------FVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELL------MHNDYKVVSPALRAVGNIVT 263 (450)
T ss_dssp HHHHHT------TCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHT------TCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHH------ccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHH------CCCchhHHHHHHHHHHHHhh
Confidence 444432 23557899999999988765321 1235666666544 35778899999999999986
Q ss_pred HhhccchHHH-HHHHHHhhhhhhhhccCCcccccCCCCchhhHHHHHHHHHHccCCCChhhhHHHHH-HhHHHHHHHHHH
Q 004950 294 LLKAKLVPFI-ENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLS-SLLTPLCQQVQT 371 (722)
Q Consensus 294 ~~r~~L~~~~-~~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~L~Eaig~Lis~~~~~~e~~~~~l~-~ll~pl~~~l~~ 371 (722)
.........+ ..++..+..++... ..+-+.....++|.+... .++.....++ .++++++.-+.
T Consensus 264 ~~~~~~~~~~~~~~l~~L~~ll~~~-----------~~~vr~~a~~~L~~l~~~---~~~~~~~~~~~~~l~~L~~~l~- 328 (450)
T 2jdq_A 264 GDDIQTQVILNCSALQSLLHLLSSP-----------KESIKKEACWTISNITAG---NRAQIQTVIDANIFPALISILQ- 328 (450)
T ss_dssp SCHHHHHHHHTTTHHHHHHHHTTCS-----------SHHHHHHHHHHHHHHTTS---CHHHHHHHHHTTHHHHHHHHHH-
T ss_pred CChHHHHHHHHCccHHHHHHHHcCC-----------CHHHHHHHHHHHHHHHcC---CHHHHHHHHHCCCHHHHHHHHh-
Confidence 4322111101 02333333333200 112233444455555432 3444434443 45555554443
Q ss_pred HHHhhhccCCchhhhHHHhHHHHHHHHHHhhhccCCCccCCCcchHHHHH-HHHHHHHHHHHhcCCCChhHHhHHHHHHH
Q 004950 372 MLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMF-KQTLDVLLQILVVFPKVEPLRCKVTSFIH 450 (722)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~lakgf~~~~~~~~~~~~~~~~-~~~~~vi~~~l~~~~~~~~Vre~~~~~~~ 450 (722)
.. +. +. -.....++++++.+..+ .....++ ..+++.+..++. ..+..|++.+..++.
T Consensus 329 ---~~----~~-~v-----~~~a~~~L~~l~~~~~~-------~~~~~l~~~~~i~~L~~ll~--~~~~~v~~~a~~aL~ 386 (450)
T 2jdq_A 329 ---TA----EF-RT-----RKEAAWAITNATSGGSA-------EQIKYLVELGCIKPLCDLLT--VMDSKIVQVALNGLE 386 (450)
T ss_dssp ---HS----CH-HH-----HHHHHHHHHHHHHHCCH-------HHHHHHHHHTCHHHHHHGGG--SSCHHHHHHHHHHHH
T ss_pred ---cC----CH-HH-----HHHHHHHHHHHHcCCCH-------HHHHHHHHCCCHHHHHHHhc--CCCHHHHHHHHHHHH
Confidence 11 11 11 23566777777765431 0112222 247788888887 457899999999998
Q ss_pred HHHHhcC
Q 004950 451 RMVDTLG 457 (722)
Q Consensus 451 r~v~~lg 457 (722)
.++....
T Consensus 387 ~l~~~~~ 393 (450)
T 2jdq_A 387 NILRLGE 393 (450)
T ss_dssp HHHHHHH
T ss_pred HHHHhch
Confidence 8887543
No 34
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.18 E-value=0.11 Score=62.62 Aligned_cols=350 Identities=11% Similarity=0.102 Sum_probs=177.1
Q ss_pred chhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHcccCcccccCCccCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 004950 83 TTFSIVQFLSGYVATMKSLSPLKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVG 162 (722)
Q Consensus 83 ~~~~~~~F~~~~l~~lk~~~~l~~~~~~~l~~Ll~~li~km~yp~~~~~~~d~~~~~~~ede~~F~e~Rk~l~~ll~~i~ 162 (722)
+...++.++.+|.+.++. ..+++..+++.++..|+-|. .|......+..++
T Consensus 505 vr~~~~~~l~~~~~~l~~-------~~~~l~~vl~~l~~~l~~~~----------------------V~~~A~~al~~l~ 555 (963)
T 2x19_B 505 LADTVMFTIGALSEWLAD-------HPVMINSVLPLVLHALGNPE----------------------LSVSSVSTLKKIC 555 (963)
T ss_dssp HHHHHHHHHHHTHHHHHH-------CHHHHTTTHHHHHHHTTCGG----------------------GHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh-------CHHHHHHHHHHHHHHhCCch----------------------HHHHHHHHHHHHH
Confidence 444566666666655442 12577788888888875210 1222223333222
Q ss_pred HcChhhHHHHHHHH---HHHHhcCCCCCChhhHHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhC--CC-CCCChh
Q 004950 163 RVAPEVTQVFIRNS---LANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQT--KL-PCHSNR 236 (722)
Q Consensus 163 ~l~~~l~l~~i~~~---l~~~l~~~~~~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~--~i-~~~~hp 236 (722)
.-.++.+..++..+ +.+.+.+ ...+-+..+..+-++..+...++++.. ...+..+|..+.+. .+ .+...+
T Consensus 556 ~~~~~~l~p~~~~il~~l~~~l~~-~~~~~~~~~~~~eai~~i~~~~~~~~~---~~~~~~l~~~l~~~l~~~~~~~~~~ 631 (963)
T 2x19_B 556 RECKYDLPPYAANIVAVSQDVLMK-QIHKTSQCMWLMQALGFLLSALQVEEI---LKNLHSLISPYIQQLEKLAEEIPNP 631 (963)
T ss_dssp HHTGGGCTTTHHHHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTSCHHHH---HHHHHHHHHHHHHHHHHHHSSCSCH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhcc-CCCChHHHHHHHHHHHHHHhcCCHHHH---HHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 21122222223333 3333333 123457778888888888877763221 23344444333221 00 011122
Q ss_pred H---HHHHHHHHHHhhHHHHhh---------------------cC--CChHHHHHHhccccCC--CCCCchhHHHHHHHH
Q 004950 237 L---VALVYLETVTRYMKFIQE---------------------HT--QYIPVVLAAFLDERGI--HHPNVHVSRRASYLF 288 (722)
Q Consensus 237 ~---V~~~~~e~i~RY~~~~~~---------------------~p--~~L~~vL~~~l~~~Gl--~~~~~~V~~ra~ylf 288 (722)
. .+..+++.++...+.+.. +| .+...+++.++ +.+ ...+..+..++|.++
T Consensus 632 ~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~v~e~~~~~l 709 (963)
T 2x19_B 632 SNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQ--KVLSKWLNDAQVVEAVCAIF 709 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHH--HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHH--HHHHhccCchHHHHHHHHHH
Confidence 2 333567777666665542 11 13334444433 111 124567999999999
Q ss_pred HHHHHHhhccchHHHHHHHHHhhhhhhhhccCCcccccCCCCchhhHHHHHHHHHHccCCCChhhhHHHHHHhHHHHHHH
Q 004950 289 MRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQ 368 (722)
Q Consensus 289 ~r~~k~~r~~L~~~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~L~Eaig~Lis~~~~~~e~~~~~l~~ll~pl~~~ 368 (722)
.+++..++....||++++++.+-...... ... -+...++.++...+..+ .....+..++..+++.
T Consensus 710 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~-----------~~~---~~l~l~~~li~~f~~~~-~~~~~~~~~l~~~~~~ 774 (963)
T 2x19_B 710 EKSVKTLLDDFAPMVPQLCEMLGRMYSTI-----------PQA---SALDLTRQLVHIFAHEP-AHFPPIEALFLLVTSV 774 (963)
T ss_dssp HHHHHHSSSTTGGGHHHHHHHHHHHHHHS-----------CCH---HHHHHHHHHHHHHTTCT-TTCHHHHHHHHHHHHH
T ss_pred HHHHHhhcccccccHHHHHHHHHHHHHcC-----------Ccc---HHHHHHHHHHHHhCCCc-chHHHHHHHHHHHHHH
Confidence 99999999999999999888765433211 011 23334555555211111 1223444455555554
Q ss_pred HHHHHHhhhccCCchhhhHHHhHHHHHHHHHHhhhccCCCccCCCcchHHHHHHHHHHHHHHHHhcCCCChhHHhHHHHH
Q 004950 369 VQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSF 448 (722)
Q Consensus 369 l~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~lakgf~~~~~~~~~~~~~~~~~~~~~vi~~~l~~~~~~~~Vre~~~~~ 448 (722)
+-..+++... +.+ + . .......++.+.+..+..-.. .+ . .+..+++.+...+. ..+..+..+++.+
T Consensus 775 ~l~~~~~~~~-~~p-d--~---~~~~f~ll~~~~~~~~~~~~~--~~-~--~~~~i~~~~~~~l~--~~~~~~~~~~l~~ 840 (963)
T 2x19_B 775 TLTLFQQGPR-DHP-D--I---VDSFMQLLAQALKRKPDLFLC--ER-L--DVKAVFQCAVLALK--FPEAPTVKASCGF 840 (963)
T ss_dssp HHHHHHHCTT-TCH-H--H---HHHHHHHHHHHHHHCGGGGGC--TT-S--CHHHHHHHHHHHTT--CSCHHHHHHHHHH
T ss_pred HHHHHhhCcc-cCc-h--H---HHHHHHHHHHHHHhCcHHHcC--Cc-c--cHHHHHHHHHHHcC--CCCHHHHHHHHHH
Confidence 4444432111 111 1 1 234445555555444322111 01 1 26677777777776 5678888899999
Q ss_pred HHHHHHhcC------cccccchHHHHHHHHhcC----ChhhHHHHHHHHHHHHHHHhh
Q 004950 449 IHRMVDTLG------ASVFPYLPKALEQLLAES----EPKEMAGFLVLLNQLICKFNT 496 (722)
Q Consensus 449 ~~r~v~~lg------~~v~p~lp~li~~ll~~~----~~~~~~~fL~~~~qli~~f~~ 496 (722)
+..++...+ ..+.++.+.++..++... ....+.++-.++..++.+++.
T Consensus 841 l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~il~~l~~~~~~ 898 (963)
T 2x19_B 841 FTELLPRCGEVESVGKVVQEDGRMLLIAVLEAIGGQASRSLMDCFADILFALNKHCFS 898 (963)
T ss_dssp HHHHGGGTTSSCHHHHHTTTSHHHHHHHHHHHHTTTSCGGGHHHHHHHHHHHHHHSHH
T ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhcccCChhHHHHHHHHHHHHHHHChH
Confidence 999987654 123466777776665432 223343333334455555443
No 35
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.15 E-value=0.056 Score=65.30 Aligned_cols=237 Identities=13% Similarity=0.171 Sum_probs=130.4
Q ss_pred HHHHHhhHHHHhh-----cC--CChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhhhh
Q 004950 243 LETVTRYMKFIQE-----HT--QYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIA 315 (722)
Q Consensus 243 ~e~i~RY~~~~~~-----~p--~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L~~~~~~il~~l~~ll~ 315 (722)
+..+++-++=|.. +| +.+..+++.++....-.+.+..||.|++.+|.|++...+..+.|+++++++.+-.-.
T Consensus 673 i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~~~- 751 (980)
T 3ibv_A 673 LMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLNSI- 751 (980)
T ss_dssp HHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHHHC-
T ss_pred HHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHhcC-
Confidence 4455777765543 22 123355555531112234678899999999999999999999999999999886321
Q ss_pred hhccCCcccccCCCCchhhHHHHHHHHHHccCCCChhhhHHHHHHhHHHHHHHHHHHHHhhhccCCchhhhHHHhHH-HH
Q 004950 316 RFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQ-QI 394 (722)
Q Consensus 316 ~~~~~~~~~~~~~~~~d~l~L~Eaig~Lis~~~~~~e~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~ 394 (722)
+..+......-+|.++..-+ . +....++.+++|+++++-+.++.....+|+ ......+. ..
T Consensus 752 -------------~~~e~~~fL~l~~qli~~f~--~-~~~~~l~~ll~~l~~~if~~l~~~~~~td~--~r~~~~l~r~~ 813 (980)
T 3ibv_A 752 -------------DMNELVDVLSFISQLIHIYK--D-NMMEITNRMLPTLLMRIFSSLSAAPQGTDD--AVKQNDLRKSY 813 (980)
T ss_dssp -------------CTTTHHHHHHHHHHHHHHTT--T-TSHHHHHHHHHHHHHHHHHHTTC----CCH--HHHHHHHHHHH
T ss_pred -------------CHHHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHhcCCCCCcHH--HHHHHHHHHHH
Confidence 12234455567788888754 2 288899999999999999988764432221 11111111 23
Q ss_pred HHHHHHhhh-ccCCCccCCCcchHHHHHHHHHHHHHHHHhcCCCChhHHhHHHHHHHHHHHhcC-cccccchHHHHHHHH
Q 004950 395 IMAINALSK-GFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLG-ASVFPYLPKALEQLL 472 (722)
Q Consensus 395 i~~l~~lak-gf~~~~~~~~~~~~~~~~~~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~lg-~~v~p~lp~li~~ll 472 (722)
+..+.++.+ ++++.-.. ..-...+..++..+......+ .+...+-.+..+++||+...| +...|-...++-..+
T Consensus 814 ~~fl~~i~~~~~~~v~~s---~~n~~~l~~~l~~l~~~a~~~-~d~~~~K~a~~~l~~~v~~~~~~~~~~gf~~f~~~~~ 889 (980)
T 3ibv_A 814 ISFILQLLNKGFGSILFT---EENQVYFDPLINSILHFANLV-GEPATQKSSIALVSKMVSLWGGKDGIAGFENFTLSLT 889 (980)
T ss_dssp HHHHHHHHHTTCTGGGGS---HHHHTTHHHHHHHHHHHC------CHHHHHHHHHHHHHHHC-------CCHHHHHHHHH
T ss_pred HHHHHHHHhCCchhhhcC---CcchHHHHHHHHHHHHHhccC-CChHHHHHHHHHHHHHHHHHCCCCcchHHHHHHHHHH
Confidence 334443333 44332110 011234555666665554443 566777778899999999974 555554444332211
Q ss_pred h---------cCChhh------HHHHHHHHHHHHHHHhhhHHHHH
Q 004950 473 A---------ESEPKE------MAGFLVLLNQLICKFNTLVHDIL 502 (722)
Q Consensus 473 ~---------~~~~~~------~~~fL~~~~qli~~f~~~~~~~l 502 (722)
. +++.++ +++.-.+...+..|+|+++...|
T Consensus 890 ~~~f~~p~~~~f~~~Daq~~~~~~e~~~~~k~~~~~~g~~~~~~l 934 (980)
T 3ibv_A 890 PLCFEMPVNPNFNTRDGQSLVVLGELAGLQKIILEKLGDIYKSYL 934 (980)
T ss_dssp HHHHHGGGC----------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 1 122222 34555555666677776654444
No 36
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=97.12 E-value=0.13 Score=58.47 Aligned_cols=124 Identities=15% Similarity=0.091 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHcChhhHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhCCC
Q 004950 151 RKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKL 230 (722)
Q Consensus 151 Rk~l~~ll~~i~~l~~~l~l~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~~i 230 (722)
||-..-.+..++...++...-.+ +.+.+-++ +.+.....+||..|..++ .+ ...+.+++.+.. .
T Consensus 66 Krl~yl~l~~~~~~~~e~~~l~~-n~l~kdL~---~~n~~ir~~AL~~L~~i~---~~-------~~~~~l~~~l~~--~ 129 (591)
T 2vgl_B 66 KKLVYLYLMNYAKSQPDMAIMAV-NSFVKDCE---DPNPLIRALAVRTMGCIR---VD-------KITEYLCEPLRK--C 129 (591)
T ss_dssp HHHHHHHHHHHHHHSHHHHHTTH-HHHGGGSS---SSSHHHHHHHHHHHHTCC---SG-------GGHHHHHHHHHH--H
T ss_pred HHHHHHHHHHHcccCchHHHHHH-HHHHHHcC---CCCHHHHHHHHHHHHcCC---hH-------HHHHHHHHHHHH--H
Confidence 33333444555555666543323 23333333 356777888988887775 22 234445555554 2
Q ss_pred CCCChhHHHHHHHHHHHhhHHHHhhcCCChH--HHHHHhccccCCCCCCchhHHHHHHHHHHHHHHh
Q 004950 231 PCHSNRLVALVYLETVTRYMKFIQEHTQYIP--VVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLL 295 (722)
Q Consensus 231 ~~~~hp~V~~~~~e~i~RY~~~~~~~p~~L~--~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~ 295 (722)
..+++|.||..+...+.+.++ ..|+.++ ..++.+. ..+.++++.|+..|..++..+|+.-
T Consensus 130 L~d~~~~VRk~A~~al~~i~~---~~p~~~~~~~~~~~l~--~lL~d~d~~V~~~A~~aL~~i~~~~ 191 (591)
T 2vgl_B 130 LKDEDPYVRKTAAVCVAKLHD---INAQMVEDQGFLDSLR--DLIADSNPMVVANAVAALSEISESH 191 (591)
T ss_dssp SSCSCHHHHHHHHHHHHHHHH---SSCCCHHHHHHHHHHH--HTTSCSCHHHHHHHHHHHHHHTTSC
T ss_pred cCCCChHHHHHHHHHHHHHHh---hChhhcccccHHHHHH--HHhCCCChhHHHHHHHHHHHHHhhC
Confidence 346889999999999998776 5688887 4667776 5667889999999999999888753
No 37
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.01 E-value=0.016 Score=64.85 Aligned_cols=336 Identities=13% Similarity=0.139 Sum_probs=183.7
Q ss_pred CChhhHHHHHHHHHHhcccCchhhhh--cccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhh------cCC
Q 004950 187 RNVEEVEAALTLLYALGESMSEEAMR--TGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQE------HTQ 258 (722)
Q Consensus 187 ~~W~~~EaaL~~l~~~gE~i~~~~~~--~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~------~p~ 258 (722)
.++.....|+..++.+...-...... ...+.++.++..| ...++|.||..+.+.++..+..-.. .+.
T Consensus 99 ~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L-----~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g 173 (530)
T 1wa5_B 99 DDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-----RENQPEMLQLEAAWALTNIASGTSAQTKVVVDAD 173 (530)
T ss_dssp SSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTT-----STTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHh-----CCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCC
Confidence 46888888888888775432111000 0123344444332 1223689999999999987653221 245
Q ss_pred ChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHH---hhccch--HHHHHHHHHhhhhhhhhccCCcccccCCCCchh
Q 004950 259 YIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKL---LKAKLV--PFIENILQSLQDTIARFTSMNYASKELSGSEDG 333 (722)
Q Consensus 259 ~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~---~r~~L~--~~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~ 333 (722)
.+|..+..+- ++++.||..|+.++..++.. ++..+. +.++.++..+++ . ..+-+
T Consensus 174 ~i~~Lv~lL~------~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~----~-----------~~~v~ 232 (530)
T 1wa5_B 174 AVPLFIQLLY------TGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS----N-----------KPSLI 232 (530)
T ss_dssp CHHHHHHHHH------HCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS----C-----------CHHHH
T ss_pred CHHHHHHHHc------CCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc----C-----------CHHHH
Confidence 6776666554 35788999999999999963 444432 234444444322 0 12224
Q ss_pred hHHHHHHHHHHccCCCChhhhHHHHHHhHHHHHHHHHHHHHhhhccCCchhhhHHHhHHHHHHHHHHhhhccCCCccCCC
Q 004950 334 SHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSS 413 (722)
Q Consensus 334 l~L~Eaig~Lis~~~~~~e~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~lakgf~~~~~~~~ 413 (722)
.....+++.|....+ +.........++++++.-+ . . .++ . .....+.+++.++.+-+.
T Consensus 233 ~~a~~~L~~L~~~~~--~~~~~~~~~~~l~~L~~lL----~---~-~d~---~---v~~~a~~~L~~L~~~~~~------ 290 (530)
T 1wa5_B 233 RTATWTLSNLCRGKK--PQPDWSVVSQALPTLAKLI----Y---S-MDT---E---TLVDACWAISYLSDGPQE------ 290 (530)
T ss_dssp HHHHHHHHHHHCCSS--SCCCHHHHGGGHHHHHHHT----T---C-CCH---H---HHHHHHHHHHHHHSSCHH------
T ss_pred HHHHHHHHHHhCCCC--CCCcHHHHHhHHHHHHHHH----c---C-CCH---H---HHHHHHHHHHHHhCCCHH------
Confidence 456667777776431 2223334445555554433 1 1 111 1 135677778877754221
Q ss_pred cchHHHHHH-HHHHHHHHHHhcCCCChhHHhHHHHHHHHHHHhcCcc---c--ccchHHHHHHHHhcCChhhHHHHHHHH
Q 004950 414 RPAIGLMFK-QTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGAS---V--FPYLPKALEQLLAESEPKEMAGFLVLL 487 (722)
Q Consensus 414 ~~~~~~~~~-~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~lg~~---v--~p~lp~li~~ll~~~~~~~~~~fL~~~ 487 (722)
....+.. .+++.+...+. ..+..|+..++.++..++..-+.. + ...+|.++. ++...+..-....+|.+
T Consensus 291 --~~~~~~~~~~v~~Lv~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~-lL~~~~~~vr~~A~~aL 365 (530)
T 1wa5_B 291 --AIQAVIDVRIPKRLVELLS--HESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRL-LLSSPKENIKKEACWTI 365 (530)
T ss_dssp --HHHHHHHTTCHHHHHHGGG--CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH-HTTCSCHHHHHHHHHHH
T ss_pred --HHHHHHhcCcHHHHHHHHC--CCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHH-HHcCCCHHHHHHHHHHH
Confidence 1222222 46777777776 567899999999998887432211 1 134555555 44444444445677888
Q ss_pred HHHHHHHhhhHHHHHH-hhhHHHHHHHHhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCC--e---eecC
Q 004950 488 NQLICKFNTLVHDILD-EVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLS--S---VFLS 561 (722)
Q Consensus 488 ~qli~~f~~~~~~~l~-~ll~~l~~~v~~~l~~~~~~~~p~~~~d~~r~~~~l~r~y~~fl~~i~~~~~~--~---vl~s 561 (722)
+.+.....+.+..+++ ..++++ ..+|+.. ++ ++++.-...+..+...+-. . .+..
T Consensus 366 ~~l~~~~~~~~~~~~~~~~l~~L----~~lL~~~--------~~-------~v~~~a~~aL~~l~~~~~~~~~~~~~l~~ 426 (530)
T 1wa5_B 366 SNITAGNTEQIQAVIDANLIPPL----VKLLEVA--------EY-------KTKKEACWAISNASSGGLQRPDIIRYLVS 426 (530)
T ss_dssp HHHTTSCHHHHHHHHHTTCHHHH----HHHHHHS--------CH-------HHHHHHHHHHHHHHHHTTTCTHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHCCCHHHH----HHHHhcC--------CH-------HHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 8877532222333333 234433 4455421 11 2666666777767654321 0 0111
Q ss_pred CCCcCChHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHh
Q 004950 562 PKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDW 602 (722)
Q Consensus 562 ~~~~~~l~~~l~~l~~~~~~~~d~~~~k~a~~~l~~li~~~ 602 (722)
.+ ++..++. .+...|+.+++.|+..+.+++..-
T Consensus 427 ---~~----~l~~L~~-ll~~~~~~v~~~al~aL~~l~~~~ 459 (530)
T 1wa5_B 427 ---QG----CIKPLCD-LLEIADNRIIEVTLDALENILKMG 459 (530)
T ss_dssp ---TT----CHHHHHH-HTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ---CC----CHHHHHH-HHhCCCHHHHHHHHHHHHHHHHhh
Confidence 11 2334443 245579999999999999998654
No 38
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=96.88 E-value=0.017 Score=58.23 Aligned_cols=153 Identities=14% Similarity=0.150 Sum_probs=108.9
Q ss_pred HHHHHHhcCCCCCChhhHHHHHHHHHHhcccCc-hhhhhccc-ccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHH
Q 004950 175 NSLANAVTFSADRNVEEVEAALTLLYALGESMS-EEAMRTGA-GHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKF 252 (722)
Q Consensus 175 ~~l~~~l~~~~~~~W~~~EaaL~~l~~~gE~i~-~~~~~~~~-~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~ 252 (722)
..+...+++ ..+-..+++|+.++..++++.. ++ -. .+...+++.++.. ....++.|+-.....+....+.
T Consensus 63 ~~L~~~l~~--D~n~~v~~~A~~al~~la~~l~~~~----f~~~y~~~llp~ll~~--l~dkk~~V~~aa~~al~~i~~~ 134 (249)
T 2qk1_A 63 GIYGHIIQK--DANIQAVALAAQSVELICDKLKTPG----FSKDYVSLVFTPLLDR--TKEKKPSVIEAIRKALLTICKY 134 (249)
T ss_dssp HHHHHHHHH--CSCHHHHHHHHHHHHHHHHHHCTTT----SCHHHHHHHHHHHHHG--GGCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcc--CCCHHHHHHHHHHHHHHHHhccccc----ccHHHHHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHHHH
Confidence 344445532 2567888999999999998876 43 23 4566677777763 3446688988888877766665
Q ss_pred HhhcC--CChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhh---ccchHHH-HHHHHHhhhhhhhhccCCccccc
Q 004950 253 IQEHT--QYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLK---AKLVPFI-ENILQSLQDTIARFTSMNYASKE 326 (722)
Q Consensus 253 ~~~~p--~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r---~~L~~~~-~~il~~l~~ll~~~~~~~~~~~~ 326 (722)
....- .|++.+++.++ .++.|+++.+|..+...+.++++..+ ..+.+|+ +.++..+..++.-.
T Consensus 135 ~~~~~~~~~l~~ll~~l~--~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~--------- 203 (249)
T 2qk1_A 135 YDPLASSGRNEDMLKDIL--EHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDT--------- 203 (249)
T ss_dssp SCTTCTTCTTHHHHHHHH--HHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCS---------
T ss_pred ccccccCCcHHHHHHHHH--HHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCC---------
Confidence 42211 25889999998 68889999999999999999999988 4577888 88888888776310
Q ss_pred CCCCchhhHHHHHHHHHHccCC
Q 004950 327 LSGSEDGSHIFEAIGLLIGMED 348 (722)
Q Consensus 327 ~~~~~d~l~L~Eaig~Lis~~~ 348 (722)
..+=+--=+|++|.+....|
T Consensus 204 --~~~VR~aA~~~l~~i~~~vG 223 (249)
T 2qk1_A 204 --QPAIRTIGFESFAILIKIFG 223 (249)
T ss_dssp --SHHHHHHHHHHHHHHHHHHC
T ss_pred --CHHHHHHHHHHHHHHHHHhC
Confidence 12224455677777777654
No 39
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=96.62 E-value=0.13 Score=58.85 Aligned_cols=163 Identities=10% Similarity=0.096 Sum_probs=96.6
Q ss_pred cChhhHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhCCCCCCChhHHHHHHH
Q 004950 164 VAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYL 243 (722)
Q Consensus 164 l~~~l~l~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~ 243 (722)
-+++.+.-.+ +.+++-+++ ++-...-+||..|..++.. + ..+.+++.+.+.-...++||.||-.+.
T Consensus 104 ~~~e~~~L~i-N~l~kDl~~---~n~~ir~lALr~L~~i~~~---e-------~~~~l~~~v~~~l~~~d~~~~VRK~A~ 169 (621)
T 2vgl_A 104 SNSELIRLIN-NAIKNDLAS---RNPTFMGLALHCIANVGSR---E-------MAEAFAGEIPKILVAGDTMDSVKQSAA 169 (621)
T ss_dssp CCHHHHHHHH-HHHHHHHHS---CCHHHHHHHHHHHHHHCCH---H-------HHHHHTTHHHHHHHCSSSCHHHHHHHH
T ss_pred CCcHHHHHHH-HHHHHhcCC---CCHHHHHHHHHHhhccCCH---H-------HHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 3455544333 344444443 4566678999999888652 2 233333333331012568899999999
Q ss_pred HHHHhhHHHHhhcCCChH--HHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhhhhhhcc--
Q 004950 244 ETVTRYMKFIQEHTQYIP--VVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTS-- 319 (722)
Q Consensus 244 e~i~RY~~~~~~~p~~L~--~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L~~~~~~il~~l~~ll~~~~~-- 319 (722)
..+.|.++- +|+.++ ..++.+. .-+.++++.|+..|..++..+|+.-.....++++.++..+..++..+.-
T Consensus 170 ~al~kl~~~---~p~~~~~~~~~~~l~--~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~ 244 (621)
T 2vgl_A 170 LCLLRLYRT---SPDLVPMGDWTSRVV--HLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDL 244 (621)
T ss_dssp HHHHHHHHH---CGGGCCCCSCHHHHH--HHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSC
T ss_pred HHHHHHHHh---ChhhcCchhHHHHHH--HHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 999988874 344333 3333333 2334678889999999999999877666677888888888877653210
Q ss_pred CCcccccCCCCchhhHHHHHHHHHHc
Q 004950 320 MNYASKELSGSEDGSHIFEAIGLLIG 345 (722)
Q Consensus 320 ~~~~~~~~~~~~d~l~L~Eaig~Lis 345 (722)
.++.......+=-|..+.+.++.+..
T Consensus 245 ~~~~~~~~~~~w~qi~il~ll~~~~~ 270 (621)
T 2vgl_A 245 QDYTYYFVPAPWLSVKLLRLLQCYPP 270 (621)
T ss_dssp STTEETTEESHHHHHHHHHHGGGSSS
T ss_pred cchhhcCCCCchHHHHHHHHHHHhCC
Confidence 01000000011137777777777643
No 40
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=96.10 E-value=0.46 Score=54.26 Aligned_cols=117 Identities=14% Similarity=0.220 Sum_probs=77.8
Q ss_pred CCChhHHHHHHHHHHHhhHHHHhhcCCChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhhccchHHHHHHHHHhh
Q 004950 232 CHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQ 311 (722)
Q Consensus 232 ~~~hp~V~~~~~e~i~RY~~~~~~~p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L~~~~~~il~~l~ 311 (722)
++++|.||..++.++++.. .|+..+.+++.+. +++.++++.||.+|+.++.++++.....+ +.++..++
T Consensus 117 ~~~n~~vr~lAL~~L~~i~-----~~~~~~~l~~~l~--~~L~~~~~~VRk~A~~al~~l~~~~p~~v----~~~~~~l~ 185 (618)
T 1w63_A 117 NHSTQFVQGLALCTLGCMG-----SSEMCRDLAGEVE--KLLKTSNSYLRKKAALCAVHVIRKVPELM----EMFLPATK 185 (618)
T ss_dssp SCSSSHHHHHHHHHHHHHC-----CHHHHHHHHHHHH--HHHHSCCHHHHHHHHHHHHHHHHHCGGGG----GGGGGGTT
T ss_pred CCCCHhHHHHHHHHHHhcC-----CHHHHHHHHHHHH--HHHcCCCHHHHHHHHHHHHHHHHHChHHH----HHHHHHHH
Confidence 3578899999999999875 4567677777776 67778999999999999999999654333 22333333
Q ss_pred hhhhhhccCCcccccCCCCchhhHHHHHHHHHHccCCCChhhhHHHHHHhHHHHHHHHHHHHH
Q 004950 312 DTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLL 374 (722)
Q Consensus 312 ~ll~~~~~~~~~~~~~~~~~d~l~L~Eaig~Lis~~~~~~e~~~~~l~~ll~pl~~~l~~~~~ 374 (722)
+++ ...|..-.+-|++.+.......++ ....+..+++.++..+.++..
T Consensus 186 ~lL--------------~D~d~~V~~~Al~~L~~i~~~~~~-~~~~~~~~v~~l~~~L~~~~~ 233 (618)
T 1w63_A 186 NLL--------------NEKNHGVLHTSVVLLTEMCERSPD-MLAHFRKLVPQLVRILKNLIM 233 (618)
T ss_dssp TST--------------TCCCHHHHHHHHHHHHHHCCSHHH-HHHHHHTTHHHHHHHHHHHHH
T ss_pred HHh--------------CCCCHhHHHHHHHHHHHHHHhChH-HHHHHHHHHHHHHHHHHHHHc
Confidence 332 223344556666666665432332 245666777777777776654
No 41
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=96.04 E-value=0.5 Score=57.55 Aligned_cols=98 Identities=9% Similarity=0.191 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHhcCCCChhHHhHHHHHHHHHHHhcCcccc--------cchHHHHHHHHh---cCChhhHHHHHHHHH
Q 004950 420 MFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVF--------PYLPKALEQLLA---ESEPKEMAGFLVLLN 488 (722)
Q Consensus 420 ~~~~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~lg~~v~--------p~lp~li~~ll~---~~~~~~~~~fL~~~~ 488 (722)
.+..+++.++..+. ..+..|+.+||.+|.+++..++..+. ||++.++..+.. ..+..+...++.-++
T Consensus 537 ~l~~vl~~ll~~l~--~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~ 614 (1049)
T 3m1i_C 537 FLRTVILKLFEFMH--ETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACG 614 (1049)
T ss_dssp HHHHHHHHHHHHTT--SSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 45555565555443 34689999999999999999887765 999999987654 444556666667777
Q ss_pred HHHHHHhh--hHHHHHHhhhHHHHHHHHhhccC
Q 004950 489 QLICKFNT--LVHDILDEVFPAIAGRIFNIIPR 519 (722)
Q Consensus 489 qli~~f~~--~~~~~l~~ll~~l~~~v~~~l~~ 519 (722)
.++..-++ ...+.+..+++++.++.-.++++
T Consensus 615 ~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 647 (1049)
T 3m1i_C 615 IIISEERSVAERNRLLSDLMQLPNMAWDTIVEQ 647 (1049)
T ss_dssp HHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77776652 36778888888888777766653
No 42
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=95.94 E-value=2.1 Score=47.54 Aligned_cols=293 Identities=12% Similarity=0.096 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHHHHcChhhHHHHHH----HHHHHHhcCCCCCChhhHHHHHHHHHHhcccCchhhh-hcccccHHhHHHH
Q 004950 150 YRKDLLVLLRSVGRVAPEVTQVFIR----NSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAM-RTGAGHLSELVPM 224 (722)
Q Consensus 150 ~Rk~l~~ll~~i~~l~~~l~l~~i~----~~l~~~l~~~~~~~W~~~EaaL~~l~~~gE~i~~~~~-~~~~~~l~~l~~~ 224 (722)
.+....-.+-+++.-.++....++. +.+.+.+.+ .+-...|.|+.+|+.++..-+.... --..+.++.++..
T Consensus 136 ~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s---~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~l 212 (529)
T 3tpo_A 136 IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLAS---PHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLAL 212 (529)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC---SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC---CCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHH
Confidence 4555566667776665554433322 233334433 5667789999999998754322100 0012445555554
Q ss_pred HHhCCCCCCChhHHHHHHHHHHHhhHHHHhhcCC--ChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhhc---cc
Q 004950 225 LLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQ--YIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKA---KL 299 (722)
Q Consensus 225 l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~~p~--~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~---~L 299 (722)
+-...... ....+...+.+++...+..-...+. .+..+++.+. +-+.++++.|+..+|.++.+++..... .+
T Consensus 213 L~~~~~~~-~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~--~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v 289 (529)
T 3tpo_A 213 LAVPDLST-LACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLV--RLLHHNDPEVLADSCWAISYLTDGPNERIEMV 289 (529)
T ss_dssp TCSSCGGG-SCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHH--HHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred HhccchhH-hHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHH--HHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 43211111 1223444455555544332222222 2456777776 567788999999999999999864322 11
Q ss_pred h--HHHHHHHHHhhhhhhhhccCCcccccCCCCchhhHHHHHHHHHHccCCCChhhhHHHHH-HhHHHHHHHHHHHHHhh
Q 004950 300 V--PFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLS-SLLTPLCQQVQTMLLDA 376 (722)
Q Consensus 300 ~--~~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~L~Eaig~Lis~~~~~~e~~~~~l~-~ll~pl~~~l~~~~~~~ 376 (722)
. ..++.++..+.. . ..+-+.....++|.+++. +++.....++ ..+.++..-+ .
T Consensus 290 ~~~g~i~~Lv~lL~~----~-----------~~~v~~~a~~aL~nl~~~---~~~~~~~i~~~g~l~~L~~LL----~-- 345 (529)
T 3tpo_A 290 VKKGVVPQLVKLLGA----T-----------ELPIVTPALRAIGNIVTG---TDEQTQKVIDAGALAVFPSLL----T-- 345 (529)
T ss_dssp HTTTCHHHHHHHHTC----S-----------CHHHHHHHHHHHHHHTTS---CHHHHHHHHHTTGGGGHHHHT----T--
T ss_pred HhccchHHHHHHhcC----C-----------ChhHHHHHHHHHHHHHcc---chHHHHHHhhcccHHHHHHHH----c--
Confidence 1 223333333211 0 112244555667776654 4444433333 3444444322 1
Q ss_pred hccCCchhhhHHHhHHHHHHHHHHhhhccCCCccCCCcchHHHHH-HHHHHHHHHHHhcCCCChhHHhHHHHHHHHHHHh
Q 004950 377 KMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMF-KQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDT 455 (722)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~i~~l~~lakgf~~~~~~~~~~~~~~~~-~~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~ 455 (722)
. +.... -.....++++++.+-+. ....+. ..+++.+..++. ..+..++..++.++..++..
T Consensus 346 -~--~~~~i-----~~~a~~aL~nl~~~~~~--------~~~~v~~~g~i~~Lv~lL~--~~~~~v~~~A~~aL~nl~~~ 407 (529)
T 3tpo_A 346 -N--PKTNI-----QKEATWTMSNITAGRQD--------QIQQVVNHGLVPFLVGVLS--KADFKTQKAAAWAITNYTSG 407 (529)
T ss_dssp -C--SSHHH-----HHHHHHHHHHHHTSCHH--------HHHHHHHTTHHHHHHHHHH--SSCHHHHHHHHHHHHHHHHH
T ss_pred -C--CCHHH-----HHHHHHHHHHHhcccHH--------HHHHHHhcCcHHHHHHHhc--CCCHHHHHHHHHHHHHHHcC
Confidence 1 11111 23566777877754221 011122 237788888887 67788999999998888764
Q ss_pred cCccc------ccchHHHHHHHHhcCChhhHHHHHHHHHHHH
Q 004950 456 LGASV------FPYLPKALEQLLAESEPKEMAGFLVLLNQLI 491 (722)
Q Consensus 456 lg~~v------~p~lp~li~~ll~~~~~~~~~~fL~~~~qli 491 (722)
-.++- ...+|.++. |+...+..-....|+.+..+.
T Consensus 408 ~~~~~~~~l~~~g~i~~L~~-LL~~~d~~i~~~~L~aL~nil 448 (529)
T 3tpo_A 408 GTVEQIVYLVHCGIIEPLMN-LLSAKDTKIIQVILDAISNIF 448 (529)
T ss_dssp SCHHHHHHHHHTTCHHHHHH-GGGCSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCcCHHHHHH-HhcCCCHHHHHHHHHHHHHHH
Confidence 32221 245677776 555555544444555555554
No 43
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=95.35 E-value=3 Score=46.04 Aligned_cols=294 Identities=12% Similarity=0.115 Sum_probs=152.6
Q ss_pred HHHHHHHHHHHHHHcChhhHHHHHH----HHHHHHhcCCCCCChhhHHHHHHHHHHhcccCchhh-hhcccccHHhHHHH
Q 004950 150 YRKDLLVLLRSVGRVAPEVTQVFIR----NSLANAVTFSADRNVEEVEAALTLLYALGESMSEEA-MRTGAGHLSELVPM 224 (722)
Q Consensus 150 ~Rk~l~~ll~~i~~l~~~l~l~~i~----~~l~~~l~~~~~~~W~~~EaaL~~l~~~gE~i~~~~-~~~~~~~l~~l~~~ 224 (722)
.+....-.+.+++.-.++....++. +.+.+.+.+ .+....|.|+.+|+.++..-+... .--..+.++.++..
T Consensus 117 lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s---~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~l 193 (510)
T 3ul1_B 117 IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLAS---PHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 193 (510)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC---SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcC---CCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHH
Confidence 4445566677777666655443333 333334433 677888999999999975433211 00012456656555
Q ss_pred HHhCCCCCCChhHHHHHHHHHHHhhHHHHhhcCC--ChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhhcc---c
Q 004950 225 LLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQ--YIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAK---L 299 (722)
Q Consensus 225 l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~~p~--~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~---L 299 (722)
+-...... ....+...+.+++...+..-...+. ....+++.+. +-+.+++..|+..+|.++.+++...... +
T Consensus 194 L~~~~~~~-~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~--~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i 270 (510)
T 3ul1_B 194 LAVPDLST-LACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLV--RLLHHNDPEVLADSCWAISYLTDGPNERIEMV 270 (510)
T ss_dssp TCSSCGGG-SCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHH--HHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred HHhccchh-hhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHH--HHHhcCCHHHHHHHHHHHHHHhhchhhhHHHH
Confidence 43321111 1123444455555443332111122 2356677776 5667889999999999999998643221 1
Q ss_pred h--HHHHHHHHHhhhhhhhhccCCcccccCCCCchhhHHHHHHHHHHccCCCChhhhHHHHH-HhHHHHHHHHHHHHHhh
Q 004950 300 V--PFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLS-SLLTPLCQQVQTMLLDA 376 (722)
Q Consensus 300 ~--~~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~L~Eaig~Lis~~~~~~e~~~~~l~-~ll~pl~~~l~~~~~~~ 376 (722)
. ..++.++..+.. . ..+-+.....++|.+.+. +++.....++ ..+.++..- +.
T Consensus 271 ~~~g~i~~Lv~lL~~----~-----------~~~v~~~al~aL~nl~~~---~~~~~~~i~~~g~l~~L~~L----L~-- 326 (510)
T 3ul1_B 271 VKKGVVPQLVKLLGA----T-----------ELPIVTPALRAIGNIVTG---TDEQTQKVIDAGALAVFPSL----LT-- 326 (510)
T ss_dssp HTTTCHHHHHHHHTC----S-----------CHHHHHHHHHHHHHHTTS---CHHHHHHHHHTTGGGGCC-C----TT--
T ss_pred HhcccchhhhhhhcC----C-----------ChhhhhHHHHHHHHhhcC---CHHHHHHHhhccchHHHHHH----hc--
Confidence 1 123333332211 0 112244555566666554 4433333333 233333221 11
Q ss_pred hccCCchhhhHHHhHHHHHHHHHHhhhccCCCccCCCcchHHHHH-HHHHHHHHHHHhcCCCChhHHhHHHHHHHHHHHh
Q 004950 377 KMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMF-KQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDT 455 (722)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~i~~l~~lakgf~~~~~~~~~~~~~~~~-~~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~ 455 (722)
++.... ......++++++.+-+. ....+. ..+++.+..++. ..+..++..++.++..+...
T Consensus 327 ---~~~~~v-----~~~A~~aL~nl~a~~~~--------~~~~v~~~g~i~~Lv~lL~--~~~~~v~~~Aa~aL~Nl~~~ 388 (510)
T 3ul1_B 327 ---NPKTNI-----QKEATWTMSNITAGRQD--------QIQQVVNHGLVPFLVGVLS--KADFKTQKEAAWAITNYTSG 388 (510)
T ss_dssp ---CSSHHH-----HHHHHHHHHHHTTSCHH--------HHHHHHHTTHHHHHHHHHH--SSCHHHHHHHHHHHHHHHHH
T ss_pred ---CCCHHH-----HHHHHHHHHHHHcCcHH--------HHHHHHhcCCHHHHHHHHc--CCCHHHHHHHHHHHHHHHcc
Confidence 111111 24566777877654221 011122 247788888887 56788999999998887764
Q ss_pred cCccc------ccchHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 004950 456 LGASV------FPYLPKALEQLLAESEPKEMAGFLVLLNQLIC 492 (722)
Q Consensus 456 lg~~v------~p~lp~li~~ll~~~~~~~~~~fL~~~~qli~ 492 (722)
-...- ...+|.++. |+...+..-....++.+..+..
T Consensus 389 ~~~~~~~~L~~~g~i~~L~~-LL~~~d~~i~~~~L~aL~nil~ 430 (510)
T 3ul1_B 389 GTVEQIVYLVHCGIIEPLMN-LLSAKDTKIIQVILDAISNIFQ 430 (510)
T ss_dssp CCHHHHHHHHHTTCHHHHHH-GGGCSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCHHHHHH-HhcCCCHHHHHHHHHHHHHHHH
Confidence 32221 245666766 5555555444455566655543
No 44
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=94.33 E-value=0.91 Score=44.28 Aligned_cols=221 Identities=13% Similarity=0.101 Sum_probs=121.8
Q ss_pred CChhhHHHHHHHHHHhcccCchhhhh-cccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhh------cCCC
Q 004950 187 RNVEEVEAALTLLYALGESMSEEAMR-TGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQE------HTQY 259 (722)
Q Consensus 187 ~~W~~~EaaL~~l~~~gE~i~~~~~~-~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~------~p~~ 259 (722)
.++...+.|+.++..++..-+..... -..+.++.++..+ ..+++.++..+++.++..+..-.. ....
T Consensus 14 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll------~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 87 (252)
T 4hxt_A 14 TDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLL------TSTDSEVQKEAARALANIASGPDEAIKAIVDAGG 87 (252)
T ss_dssp SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT------TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTH
T ss_pred CCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHH------hCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCC
Confidence 45777889999999998775422100 0123444444443 224578999999999887653111 2234
Q ss_pred hHHHHHHhccccCCCCCCchhHHHHHHHHHHHHH---HhhccchH--HHHHHHHHhhhhhhhhccCCcccccCCCCchhh
Q 004950 260 IPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVK---LLKAKLVP--FIENILQSLQDTIARFTSMNYASKELSGSEDGS 334 (722)
Q Consensus 260 L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k---~~r~~L~~--~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~l 334 (722)
++.++..+ .++++.++..|+.++.+++. ..+..+.. .++.+++.+.+ . ..+-+.
T Consensus 88 i~~l~~ll------~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~----~-----------~~~~~~ 146 (252)
T 4hxt_A 88 VEVLVKLL------TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS----T-----------DSEVQK 146 (252)
T ss_dssp HHHHHHHT------TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC----S-----------CHHHHH
T ss_pred HHHHHHHH------cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC----C-----------CHHHHH
Confidence 55444333 35788999999999999994 23333322 23333333321 0 122234
Q ss_pred HHHHHHHHHHccCCCChhhhHHHHH-HhHHHHHHHHHHHHHhhhccCCchhhhHHHhHHHHHHHHHHhhhccCCCccCCC
Q 004950 335 HIFEAIGLLIGMEDVPPEKQSDYLS-SLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSS 413 (722)
Q Consensus 335 ~L~Eaig~Lis~~~~~~e~~~~~l~-~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~lakgf~~~~~~~~ 413 (722)
....+++.+... +++.+....+ ..+++++ +.+.. .+ .. .....+.++++++.+-+
T Consensus 147 ~a~~~L~~l~~~---~~~~~~~~~~~~~i~~L~----~ll~~----~~-~~-----v~~~a~~~L~~l~~~~~------- 202 (252)
T 4hxt_A 147 EAARALANIASG---PDEAIKAIVDAGGVEVLV----KLLTS----TD-SE-----VQKEAARALANIASGPT------- 202 (252)
T ss_dssp HHHHHHHHHTTS---CHHHHHHHHHTTHHHHHH----HHTTC----SC-HH-----HHHHHHHHHHHHTTSBH-------
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHCcCHHHHH----HHHCC----CC-HH-----HHHHHHHHHHHHHcCCH-------
Confidence 444555555442 3433333322 2333332 33321 11 11 13467777888765311
Q ss_pred cchHHHHH--HHHHHHHHHHHhcCCCChhHHhHHHHHHHHHHHhcCccccc
Q 004950 414 RPAIGLMF--KQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFP 462 (722)
Q Consensus 414 ~~~~~~~~--~~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~lg~~v~p 462 (722)
.....+ ..+++.+..++. ..+..+++.+..++.++...-+..-.|
T Consensus 203 --~~~~~l~~~~~i~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~ 249 (252)
T 4hxt_A 203 --SAIKAIVDAGGVEVLQKLLT--STDSEVQKEAQRALENIKSGGWLEHHH 249 (252)
T ss_dssp --HHHHHHHHTTHHHHHHHGGG--CSCHHHHHHHHHHHHHHHHTCBCCC--
T ss_pred --HHHHHHHHCCCHHHHHHHHC--CCcHHHHHHHHHHHHHHHcCCCccccc
Confidence 122222 236788888887 567899999999999998876654433
No 45
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=93.51 E-value=4.5 Score=49.85 Aligned_cols=114 Identities=18% Similarity=0.206 Sum_probs=71.5
Q ss_pred HHHHHHHHHhhhccCCCccCCCcchHHHHHHHHHHHHHHHHhcC-C---------CChhHHhHHHHHHHHHHHhcCcccc
Q 004950 392 QQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVF-P---------KVEPLRCKVTSFIHRMVDTLGASVF 461 (722)
Q Consensus 392 ~~~i~~l~~lakgf~~~~~~~~~~~~~~~~~~~~~vi~~~l~~~-~---------~~~~Vre~~~~~~~r~v~~lg~~v~ 461 (722)
...+.++|+++.=|.. +| +.+..+++-++..+... + .+..||.++|.++.|++.-+++.+.
T Consensus 550 ~~~i~~l~~l~~~~~~------~p---~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~ 620 (1204)
T 3a6p_A 550 SCVLTNVSALFPFVTY------RP---EFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVL 620 (1204)
T ss_dssp HHHHHHHHHHGGGGGT------CG---GGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHG
T ss_pred HHHHHHHHHHHHHHhc------Cc---hHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3456666666554442 12 34555666555555421 1 3458999999999999999999999
Q ss_pred cchHHHHHHH---Hh--c-CChhhHHHHHHHHHHHHHHHhh--hHHHHHHhhhHHHHHHHH
Q 004950 462 PYLPKALEQL---LA--E-SEPKEMAGFLVLLNQLICKFNT--LVHDILDEVFPAIAGRIF 514 (722)
Q Consensus 462 p~lp~li~~l---l~--~-~~~~~~~~fL~~~~qli~~f~~--~~~~~l~~ll~~l~~~v~ 514 (722)
|+++.+...+ +. . ....+...+...++.+...++. ....++..++.|++++.-
T Consensus 621 p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w~ 681 (1204)
T 3a6p_A 621 PNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVASIWL 681 (1204)
T ss_dssp GGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHc
Confidence 9999988854 33 2 3345554444455444333332 244557788888876654
No 46
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=93.36 E-value=1.2 Score=43.48 Aligned_cols=190 Identities=12% Similarity=0.078 Sum_probs=109.5
Q ss_pred HHHHHHHhhhccCCccchhhHHHHHHHHHHHhccCCCChHHHHHHHH--HHHHHHHHHcccCcccccCCccCCCCChhHH
Q 004950 67 EVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLSPLKEEQRLHAG--QILEVILTQIRYDPMYRNNLDVLDKIGIEEE 144 (722)
Q Consensus 67 ~~~plvL~~~~~~d~~~~~~~~~F~~~~l~~lk~~~~l~~~~~~~l~--~Ll~~li~km~yp~~~~~~~d~~~~~~~ede 144 (722)
+.+|.++.++.+++.++...+...+..+.. .. +..+..+. ..+..+++-++-+ +
T Consensus 44 g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~---~~----~~~~~~~~~~~~i~~l~~ll~~~--------------~--- 99 (252)
T 4hxt_A 44 GGVEVLVKLLTSTDSEVQKEAARALANIAS---GP----DEAIKAIVDAGGVEVLVKLLTST--------------D--- 99 (252)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHTT---SC----HHHHHHHHHTTHHHHHHHHTTCS--------------S---
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHc---CC----hHHHHHHHHCCCHHHHHHHHcCC--------------C---
Confidence 678888999988776665555555444431 10 11111111 2455555555510 1
Q ss_pred HHHHHHHHHHHHHHHHHHHcChhhHHHHH----HHHHHHHhcCCCCCChhhHHHHHHHHHHhcccCchhhhh-cccccHH
Q 004950 145 DRMVEYRKDLLVLLRSVGRVAPEVTQVFI----RNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMR-TGAGHLS 219 (722)
Q Consensus 145 ~~F~e~Rk~l~~ll~~i~~l~~~l~l~~i----~~~l~~~l~~~~~~~W~~~EaaL~~l~~~gE~i~~~~~~-~~~~~l~ 219 (722)
.+.|......+.+++...++....++ -+.+.+.+. ..++...+.++.+++.++..-+..... ...+.++
T Consensus 100 ---~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 173 (252)
T 4hxt_A 100 ---SEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT---STDSEVQKEAARALANIASGPDEAIKAIVDAGGVE 173 (252)
T ss_dssp ---HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT---CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHH
T ss_pred ---HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc---CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHH
Confidence 13677777777777765554333222 123333443 356889999999999998864322100 0123444
Q ss_pred hHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhh------cCCChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHH
Q 004950 220 ELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQE------HTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVK 293 (722)
Q Consensus 220 ~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~------~p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k 293 (722)
.++..+ ..+++.|+..++++++..+..-.. +...++.+++ -+.++++.+|..|+.++.+++.
T Consensus 174 ~L~~ll------~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~------ll~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 174 VLVKLL------TSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQK------LLTSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp HHHHHT------TCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHH------GGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHH------CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHH------HHCCCcHHHHHHHHHHHHHHHc
Confidence 444443 236689999999999988752111 1223333332 3345778999999999999988
Q ss_pred Hhhcc
Q 004950 294 LLKAK 298 (722)
Q Consensus 294 ~~r~~ 298 (722)
.....
T Consensus 242 ~~~~~ 246 (252)
T 4hxt_A 242 GGWLE 246 (252)
T ss_dssp TCBCC
T ss_pred CCCcc
Confidence 65443
No 47
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=93.33 E-value=2.6 Score=41.18 Aligned_cols=189 Identities=16% Similarity=0.110 Sum_probs=106.6
Q ss_pred HHHHHHHhhhccCCccchhhHHHHHHHHHHHhccCCCChHHHHHHHH--HHHHHHHHHcccCcccccCCccCCCCChhHH
Q 004950 67 EVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLSPLKEEQRLHAG--QILEVILTQIRYDPMYRNNLDVLDKIGIEEE 144 (722)
Q Consensus 67 ~~~plvL~~~~~~d~~~~~~~~~F~~~~l~~lk~~~~l~~~~~~~l~--~Ll~~li~km~yp~~~~~~~d~~~~~~~ede 144 (722)
+.+|.++.++.+++.++...+...+..+.. .. +..+..+. ..++.+++-++-+ +
T Consensus 54 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~---~~----~~~~~~i~~~g~i~~L~~lL~~~--------------~--- 109 (252)
T 4db8_A 54 GALPALVQLLSSPNEQILQEALWALSNIAS---GG----NEQIQAVIDAGALPALVQLLSSP--------------N--- 109 (252)
T ss_dssp THHHHHHHGGGCSCHHHHHHHHHHHHHHTT---SC----HHHHHHHHHTTHHHHHHHGGGCS--------------C---
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhc---CC----HHHHHHHHHcCCHHHHHHHHcCC--------------C---
Confidence 678889999988876665555555444431 11 11112121 2556666555421 1
Q ss_pred HHHHHHHHHHHHHHHHHHHcChhhHHHH----HHHHHHHHhcCCCCCChhhHHHHHHHHHHhcccCchhhhh-cccccHH
Q 004950 145 DRMVEYRKDLLVLLRSVGRVAPEVTQVF----IRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMR-TGAGHLS 219 (722)
Q Consensus 145 ~~F~e~Rk~l~~ll~~i~~l~~~l~l~~----i~~~l~~~l~~~~~~~W~~~EaaL~~l~~~gE~i~~~~~~-~~~~~l~ 219 (722)
.+.|......+.++..-.+.....+ +-+.+.+.+.+ .++...+.++.+++.++..-+..... ...+.++
T Consensus 110 ---~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 183 (252)
T 4db8_A 110 ---EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS---PNEQILQEALWALSNIASGGNEQIQAVIDAGALP 183 (252)
T ss_dssp ---HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGC---SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHH
T ss_pred ---HHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhC---CCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHH
Confidence 1356666666666655443321111 12333344443 57999999999999999764332100 0124455
Q ss_pred hHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhhcCCC-hH-HHHHHhccccCCCCCCchhHHHHHHHHHHHHH
Q 004950 220 ELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQY-IP-VVLAAFLDERGIHHPNVHVSRRASYLFMRVVK 293 (722)
Q Consensus 220 ~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~~p~~-L~-~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k 293 (722)
.++..+- .+++.|+..++++++..+..-..+-+. +. .+++.++ .-+.+.++.+|..|+.++.++++
T Consensus 184 ~L~~ll~------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~--~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 184 ALVQLLS------SPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLE--QLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHGGG------CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHH--TTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHHC------CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHH--HHhCCCCHHHHHHHHHHHHHHhc
Confidence 5554432 346889999999999876321111000 00 2444455 45556788999999999988764
No 48
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=93.25 E-value=12 Score=41.20 Aligned_cols=320 Identities=14% Similarity=0.150 Sum_probs=155.5
Q ss_pred HHHHHHHhhhccCCccchhhHHHHHHHHHHHhccCCCChHHHHHHHH--HHHHHHHHHcccCcccccCCccCCCCChhHH
Q 004950 67 EVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLSPLKEEQRLHAG--QILEVILTQIRYDPMYRNNLDVLDKIGIEEE 144 (722)
Q Consensus 67 ~~~plvL~~~~~~d~~~~~~~~~F~~~~l~~lk~~~~l~~~~~~~l~--~Ll~~li~km~yp~~~~~~~d~~~~~~~ede 144 (722)
+.+|.++.++.+++.++.+.+..-+..+.. +. +..+..+. ..+..++.-++.++... . .
T Consensus 143 GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~---d~----~~~r~~v~~~G~i~~Ll~lL~~~~~~~--------~-~--- 203 (510)
T 3ul1_B 143 GAIPAFISLLASPHAHISEQAVWALGNIAG---DG----SAFRDLVIKHGAIDPLLALLAVPDLST--------L-A--- 203 (510)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHT---TC----HHHHHHHHHTTCHHHHHHHTCSSCGGG--------S-C---
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHh---CC----HHHHHHHHHcCChHHHHHHHHhccchh--------h-h---
Confidence 578999999998888887666666555542 11 12222111 23444555555432211 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHc-ChhhHHHH---HHHHHHHHhcCCCCCChhhHHHHHHHHHHhcccCchhh-hhcccccHH
Q 004950 145 DRMVEYRKDLLVLLRSVGRV-APEVTQVF---IRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEA-MRTGAGHLS 219 (722)
Q Consensus 145 ~~F~e~Rk~l~~ll~~i~~l-~~~l~l~~---i~~~l~~~l~~~~~~~W~~~EaaL~~l~~~gE~i~~~~-~~~~~~~l~ 219 (722)
..+++.....+.+++.- .+..-... +-+.+.+.+.+ .+.+..+.++.++..+++.-.... .-...+.++
T Consensus 204 ---~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~---~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~ 277 (510)
T 3ul1_B 204 ---CGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHH---NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVP 277 (510)
T ss_dssp ---HHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTC---SCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHH
T ss_pred ---HHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhc---CCHHHHHHHHHHHHHHhhchhhhHHHHHhcccch
Confidence 11333334444444432 22222222 22334444443 567788999999999987643211 001234566
Q ss_pred hHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhhcCCCh--HHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhh-
Q 004950 220 ELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYI--PVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLK- 296 (722)
Q Consensus 220 ~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~~p~~L--~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r- 296 (722)
.++..+- .+++.|+..++.+++..+..-....+.+ ..+++.+. .-+.+++..+|..||.++..++....
T Consensus 278 ~Lv~lL~------~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~--~LL~~~~~~v~~~A~~aL~nl~a~~~~ 349 (510)
T 3ul1_B 278 QLVKLLG------ATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFP--SLLTNPKTNIQKEATWTMSNITAGRQD 349 (510)
T ss_dssp HHHHHHT------CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC---CTTCSSHHHHHHHHHHHHHHTTSCHH
T ss_pred hhhhhhc------CCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHH--HHhcCCCHHHHHHHHHHHHHHHcCcHH
Confidence 6666543 2557788888888886543211110000 01222333 34457888999999999999985333
Q ss_pred --ccchH--HHHHHHHHhhhhhhhhccCCcccccCCCCchhhHHHHHHHHHHccCCCChhhhHHHHH-HhHHHHHHHHHH
Q 004950 297 --AKLVP--FIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLS-SLLTPLCQQVQT 371 (722)
Q Consensus 297 --~~L~~--~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~L~Eaig~Lis~~~~~~e~~~~~l~-~ll~pl~~~l~~ 371 (722)
..+.. .++.++..+++ . ..+-+....-+++.+.... +.+.....++ ..+.|++.-+
T Consensus 350 ~~~~v~~~g~i~~Lv~lL~~----~-----------~~~v~~~Aa~aL~Nl~~~~--~~~~~~~L~~~g~i~~L~~LL-- 410 (510)
T 3ul1_B 350 QIQQVVNHGLVPFLVGVLSK----A-----------DFKTQKEAAWAITNYTSGG--TVEQIVYLVHCGIIEPLMNLL-- 410 (510)
T ss_dssp HHHHHHHTTHHHHHHHHHHS----S-----------CHHHHHHHHHHHHHHHHHC--CHHHHHHHHHTTCHHHHHHGG--
T ss_pred HHHHHHhcCCHHHHHHHHcC----C-----------CHHHHHHHHHHHHHHHccC--CHHHHHHHHHCCCHHHHHHHh--
Confidence 22221 23333333321 1 1222444445566655542 3433333333 4455555432
Q ss_pred HHHhhhccCCchhhhHHHhHHHHHHHHHHhhhccCCCccCCCcchHHHHHHH--HHHHHHHHHhcCCCChhHHhHHHHHH
Q 004950 372 MLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQ--TLDVLLQILVVFPKVEPLRCKVTSFI 449 (722)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~lakgf~~~~~~~~~~~~~~~~~~--~~~vi~~~l~~~~~~~~Vre~~~~~~ 449 (722)
. . .|. .. +..++.++.++.+.-.... . .......+.+ .++.+-.+.. ..+.+|++++...+
T Consensus 411 --~---~-~d~---~i---~~~~L~aL~nil~~~~~~~--~-~~~~~~~iee~ggl~~ie~Lq~--~~n~~i~~~A~~ii 473 (510)
T 3ul1_B 411 --S---A-KDT---KI---IQVILDAISNIFQAAEKLG--E-TEKLSIMIEECGGLDKIEALQR--HENESVYKASLNLI 473 (510)
T ss_dssp --G---C-SCH---HH---HHHHHHHHHHHHHHHHTTT--C-HHHHHHHHHHTTHHHHHHHGGG--CSSHHHHHHHHHHH
T ss_pred --c---C-CCH---HH---HHHHHHHHHHHHHHhHhcc--c-hHHHHHHHHHcCcHHHHHHHHc--CCCHHHHHHHHHHH
Confidence 1 1 121 11 2344445554433211110 0 0112233333 3455444333 67889999998887
Q ss_pred HHHHHh
Q 004950 450 HRMVDT 455 (722)
Q Consensus 450 ~r~v~~ 455 (722)
.+....
T Consensus 474 e~yf~~ 479 (510)
T 3ul1_B 474 EKYFSV 479 (510)
T ss_dssp HHHCC-
T ss_pred HHHCCC
Confidence 666543
No 49
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=93.09 E-value=13 Score=41.12 Aligned_cols=315 Identities=15% Similarity=0.159 Sum_probs=158.6
Q ss_pred ccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhhcCCChH--HHHHHhccccCCCCCCchhHHHHHHHHHHHHH
Q 004950 216 GHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIP--VVLAAFLDERGIHHPNVHVSRRASYLFMRVVK 293 (722)
Q Consensus 216 ~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~~p~~L~--~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k 293 (722)
+.+|.++..|-. .++|.++..+.+++...+..-..+...+- .+++.|+ .-+.+++..|+..|+.++..++.
T Consensus 119 G~ip~Lv~lL~~-----~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv--~LL~s~~~~v~e~A~~aL~nLa~ 191 (529)
T 3tpo_A 119 GLIPKFVSFLGK-----TDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFI--SLLASPHAHISEQAVWALGNIAG 191 (529)
T ss_dssp THHHHHHHHHTC-----TTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHH--HHTTCSCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHcC-----CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHH--HHHcCCCHHHHHHHHHHHHHHhc
Confidence 456666665532 35688999999988877654333221110 1333343 33456889999999999999985
Q ss_pred ---HhhccchH--HHHHHHHHhhhhhhhhccCCcccccCCCCchhhHHHHHHHHHHccCCCChhhhHHHHHHhHHHHHHH
Q 004950 294 ---LLKAKLVP--FIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQ 368 (722)
Q Consensus 294 ---~~r~~L~~--~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~L~Eaig~Lis~~~~~~e~~~~~l~~ll~pl~~~ 368 (722)
.+|..+.. -++.++..+..-- . ......-.....-+++.+.... .+.........+++++..-
T Consensus 192 ~~~~~r~~i~~~g~i~~Ll~lL~~~~--------~--~~~~~~~~~~a~~~L~nl~~~~--~~~~~~~~~~~~lp~L~~L 259 (529)
T 3tpo_A 192 AGSAFRDLVIKHGAIDPLLALLAVPD--------L--STLACGYLRNLTWTLSNLCRNK--NPAPPLDAVEQILPTLVRL 259 (529)
T ss_dssp TCHHHHHHHHHTTCHHHHHHTTCSSC--------G--GGSCHHHHHHHHHHHHHHHCCC--TTCCCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHcCCcHHHHHHHhccc--------h--hHhHHHHHHHHHHHHHHHHhcc--cchhhHHHHhhHHHHHHHH
Confidence 45655543 2444444432210 0 0000011112223333333321 2223344445555554432
Q ss_pred HHHHHHhhhccCCchhhhHHHhHHHHHHHHHHhhhccCCCccCCCcchHHHH--HHHHHHHHHHHHhcCCCChhHHhHHH
Q 004950 369 VQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLM--FKQTLDVLLQILVVFPKVEPLRCKVT 446 (722)
Q Consensus 369 l~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~lakgf~~~~~~~~~~~~~~~--~~~~~~vi~~~l~~~~~~~~Vre~~~ 446 (722)
+. . .++ .. ......+++.++.+-.. ..+. -..+.+.+...+. ..+..++..+.
T Consensus 260 ----L~---~-~~~---~v---~~~a~~aL~~l~~~~~~---------~~~~v~~~g~i~~Lv~lL~--~~~~~v~~~a~ 314 (529)
T 3tpo_A 260 ----LH---H-NDP---EV---LADSCWAISYLTDGPNE---------RIEMVVKKGVVPQLVKLLG--ATELPIVTPAL 314 (529)
T ss_dssp ----TT---S-SCH---HH---HHHHHHHHHHHHSSCHH---------HHHHHHTTTCHHHHHHHHT--CSCHHHHHHHH
T ss_pred ----hc---C-CcH---HH---HHHHHHHHHHhhhhhhh---------hHHHHHhccchHHHHHHhc--CCChhHHHHHH
Confidence 21 1 111 11 34566777777654321 1111 1235566666666 56788888888
Q ss_pred HHHHHHHHhcCcc---c--ccchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHhhhHHHHHHh-hhHHHHHHHHhhccCC
Q 004950 447 SFIHRMVDTLGAS---V--FPYLPKALEQLLAESEPKEMAGFLVLLNQLICKFNTLVHDILDE-VFPAIAGRIFNIIPRD 520 (722)
Q Consensus 447 ~~~~r~v~~lg~~---v--~p~lp~li~~ll~~~~~~~~~~fL~~~~qli~~f~~~~~~~l~~-ll~~l~~~v~~~l~~~ 520 (722)
.+++.++..-... + ...+|.++. ++.+.+..-....+|.++.+...-......+.+. +++++ ..+|...
T Consensus 315 ~aL~nl~~~~~~~~~~i~~~g~l~~L~~-LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~L----v~lL~~~ 389 (529)
T 3tpo_A 315 RAIGNIVTGTDEQTQKVIDAGALAVFPS-LLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFL----VGVLSKA 389 (529)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTGGGGHHH-HTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHH----HHHHHSS
T ss_pred HHHHHHHccchHHHHHHhhcccHHHHHH-HHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHH----HHHhcCC
Confidence 8888775321110 0 123344444 5555444334566788887765333323333332 34433 4555531
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCe---eecCCCCcCChHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 004950 521 AFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSS---VFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIR 597 (722)
Q Consensus 521 ~~~~~p~~~~d~~r~~~~l~r~y~~fl~~i~~~~~~~---vl~s~~~~~~l~~~l~~l~~~~~~~~d~~~~k~a~~~l~~ 597 (722)
+.+ +++.-...+..+...+-.. .+.. .+ ++..++. .++..|+.....++..+.+
T Consensus 390 --------~~~-------v~~~A~~aL~nl~~~~~~~~~~~l~~---~g----~i~~L~~-LL~~~d~~i~~~~L~aL~n 446 (529)
T 3tpo_A 390 --------DFK-------TQKAAAWAITNYTSGGTVEQIVYLVH---CG----IIEPLMN-LLSAKDTKIIQVILDAISN 446 (529)
T ss_dssp --------CHH-------HHHHHHHHHHHHHHHSCHHHHHHHHH---TT----CHHHHHH-GGGCSCHHHHHHHHHHHHH
T ss_pred --------CHH-------HHHHHHHHHHHHHcCCCHHHHHHHHH---Cc----CHHHHHH-HhcCCCHHHHHHHHHHHHH
Confidence 112 4444444444444432111 0111 11 2334444 3467899999999999999
Q ss_pred HHHHh
Q 004950 598 LIKDW 602 (722)
Q Consensus 598 li~~~ 602 (722)
++...
T Consensus 447 il~~~ 451 (529)
T 3tpo_A 447 IFQAA 451 (529)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98543
No 50
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=92.53 E-value=0.66 Score=45.60 Aligned_cols=129 Identities=18% Similarity=0.191 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHcChhhHHHHH----HHHHHHHhcCCCCCChhhHHHHHHHHHHhcccCchh-hhhcccccHHhHHHH
Q 004950 150 YRKDLLVLLRSVGRVAPEVTQVFI----RNSLANAVTFSADRNVEEVEAALTLLYALGESMSEE-AMRTGAGHLSELVPM 224 (722)
Q Consensus 150 ~Rk~l~~ll~~i~~l~~~l~l~~i----~~~l~~~l~~~~~~~W~~~EaaL~~l~~~gE~i~~~-~~~~~~~~l~~l~~~ 224 (722)
.|......+.+++.-.++....++ -+.+.+.+.+ .++...+.|+.+|+.++..-+.. ..-...+.++.++..
T Consensus 70 v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 146 (252)
T 4db8_A 70 ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS---PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL 146 (252)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGC---SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHG
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcC---CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHH
Confidence 455555666665554433322222 2333344443 57899999999999998864432 100112344444444
Q ss_pred HHhCCCCCCChhHHHHHHHHHHHhhHHHHh------hcCCChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHH
Q 004950 225 LLQTKLPCHSNRLVALVYLETVTRYMKFIQ------EHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVK 293 (722)
Q Consensus 225 l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~------~~p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k 293 (722)
+ ..+++.|+..++++++..+..-. .+...++.+++.+- ++++.|+..|+.++..++.
T Consensus 147 L------~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~------~~~~~v~~~a~~~L~~l~~ 209 (252)
T 4db8_A 147 L------SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS------SPNEQILQEALWALSNIAS 209 (252)
T ss_dssp G------GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGG------CSSHHHHHHHHHHHHHHTT
T ss_pred H------hCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHC------CCCHHHHHHHHHHHHHHhc
Confidence 3 23567899999999998875322 12456666665443 4578899999999999984
No 51
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=91.86 E-value=20 Score=40.54 Aligned_cols=115 Identities=7% Similarity=0.084 Sum_probs=73.3
Q ss_pred CChhHHHHHHHHHHHhhHHHHhhcCCChHHHHHHhccccCC--CCCCchhHHHHHHHHHHHHHHhhccchHHHHHHHHHh
Q 004950 233 HSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGI--HHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSL 310 (722)
Q Consensus 233 ~~hp~V~~~~~e~i~RY~~~~~~~p~~L~~vL~~~l~~~Gl--~~~~~~V~~ra~ylf~r~~k~~r~~L~~~~~~il~~l 310 (722)
+++|.+|-.++-++++.. .|++.+.+++.+. +++ .|+++.||.+|++++.++++.....+. + +.+++.+
T Consensus 122 ~~n~~ir~lALr~L~~i~-----~~e~~~~l~~~v~--~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~-~-~~~~~~l 192 (621)
T 2vgl_A 122 SRNPTFMGLALHCIANVG-----SREMAEAFAGEIP--KILVAGDTMDSVKQSAALCLLRLYRTSPDLVP-M-GDWTSRV 192 (621)
T ss_dssp SCCHHHHHHHHHHHHHHC-----CHHHHHHHTTHHH--HHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCC-C-CSCHHHH
T ss_pred CCCHHHHHHHHHHhhccC-----CHHHHHHHHHHHH--HHHhCCCCCHHHHHHHHHHHHHHHHhChhhcC-c-hhHHHHH
Confidence 477899999999999863 4778888888887 777 789999999999999999996554443 2 2344444
Q ss_pred hhhhhhhccCCcccccCCCCchhhHHHHHHHHHHccCCCChhhhHHHHHHhHHHHHHHHHHHHH
Q 004950 311 QDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLL 374 (722)
Q Consensus 311 ~~ll~~~~~~~~~~~~~~~~~d~l~L~Eaig~Lis~~~~~~e~~~~~l~~ll~pl~~~l~~~~~ 374 (722)
..+|. ..|-.-+.-|++.+.......+ +.+..+++.+++.+.+++.
T Consensus 193 ~~lL~--------------d~d~~V~~~a~~~l~~i~~~~~----~~~~~~~~~~~~~L~~ll~ 238 (621)
T 2vgl_A 193 VHLLN--------------DQHLGVVTAATSLITTLAQKNP----EEFKTSVSLAVSRLSRIVT 238 (621)
T ss_dssp HHHTT--------------CSCHHHHHHHHHHHHHHHHHCH----HHHTTHHHHHHHHHHHHHH
T ss_pred HHHhC--------------CCCccHHHHHHHHHHHHHHhCh----HHHHHHHHHHHHHHHHHHh
Confidence 44442 1112233344444444321112 2344556666677766664
No 52
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=91.22 E-value=8.8 Score=36.21 Aligned_cols=79 Identities=13% Similarity=0.110 Sum_probs=58.3
Q ss_pred CChhhHHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhhcCCChHHHHHH
Q 004950 187 RNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAA 266 (722)
Q Consensus 187 ~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~~p~~L~~vL~~ 266 (722)
.+|.....++..|..+|+. ..++.++..+ .++++.||..+.+.++++. .++.++.++..
T Consensus 31 ~~~~vR~~A~~~L~~~~~~----------~~~~~L~~~l------~~~~~~vr~~a~~aL~~~~-----~~~~~~~L~~~ 89 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDE----------RAVEPLIKAL------KDEDAWVRRAAADALGQIG-----DERAVEPLIKA 89 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCG----------GGHHHHHHHT------TCSCHHHHHHHHHHHHHHC-----CGGGHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc----------cHHHHHHHHH------cCCCHHHHHHHHHHHHhhC-----CHHHHHHHHHH
Confidence 6899999999999888762 2345555543 2367899999999999875 45666666554
Q ss_pred hccccCCCCCCchhHHHHHHHHHHHH
Q 004950 267 FLDERGIHHPNVHVSRRASYLFMRVV 292 (722)
Q Consensus 267 ~l~~~Gl~~~~~~V~~ra~ylf~r~~ 292 (722)
+ .++++.||..++.++.++.
T Consensus 90 l------~~~~~~vr~~a~~aL~~~~ 109 (211)
T 3ltm_A 90 L------KDEDGWVRQSAAVALGQIG 109 (211)
T ss_dssp T------TCSSHHHHHHHHHHHHHHC
T ss_pred H------cCCCHHHHHHHHHHHHHhC
Confidence 3 4688899999988887764
No 53
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=91.14 E-value=19 Score=38.88 Aligned_cols=373 Identities=12% Similarity=0.126 Sum_probs=182.8
Q ss_pred CChhhHHHHHHHHHHhcccCchhh-hhcccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHh------hcCCC
Q 004950 187 RNVEEVEAALTLLYALGESMSEEA-MRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQ------EHTQY 259 (722)
Q Consensus 187 ~~W~~~EaaL~~l~~~gE~i~~~~-~~~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~------~~p~~ 259 (722)
.++...+.|...++.++..-++.. .--..+.++.++..|- .+++.++..+.+.+...+.--. ..-.-
T Consensus 14 ~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~------s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~ 87 (457)
T 1xm9_A 14 QDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLR------SPNQNVQQAAAGALRNLVFRSTTNKLETRRQNG 87 (457)
T ss_dssp SCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTT------SSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHc------CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCC
Confidence 467778889999998875432211 0002345665655432 3677899888888876664211 12355
Q ss_pred hHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHH--hhccchHHHHHHHHHhhhhhhhhccC--CcccccCCCCchhhH
Q 004950 260 IPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKL--LKAKLVPFIENILQSLQDTIARFTSM--NYASKELSGSEDGSH 335 (722)
Q Consensus 260 L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~--~r~~L~~~~~~il~~l~~ll~~~~~~--~~~~~~~~~~~d~l~ 335 (722)
+|+.+..+-. ++++.++..++.++..++.. +|..+. +..+..+-.++....+- .......-...+.-.
T Consensus 88 i~~Lv~lL~~-----~~~~~~~~~a~~aL~nLa~~~~~~~~i~---~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v 159 (457)
T 1xm9_A 88 IREAVSLLRR-----TGNAEIQKQLTGLLWNLSSTDELKEELI---ADALPVLADRVIIPFSGWCDGNSNMSREVVDPEV 159 (457)
T ss_dssp HHHHHHHHTT-----CCCHHHHHHHHHHHHHHHTSSSTHHHHH---HHHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred HHHHHHHHhh-----CCCHHHHHHHHHHHHHHhcCHHhHHHHH---hccHHHHHHHHhccccccccCccchhcccccHHH
Confidence 6666655531 35678999999999999964 333232 23444444444210000 000000000011223
Q ss_pred HHHHHHHHHccCCCChhhhHHHHH--HhHHHHHHHHHHHHHhhhccCCchhhhHHHh-HH--------------------
Q 004950 336 IFEAIGLLIGMEDVPPEKQSDYLS--SLLTPLCQQVQTMLLDAKMLNPEESTAKFAN-IQ-------------------- 392 (722)
Q Consensus 336 L~Eaig~Lis~~~~~~e~~~~~l~--~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~-~~-------------------- 392 (722)
+..|++.|-.... .++.+....+ ..+++|+.-+......... +.+....... +.
T Consensus 160 ~~~a~~aL~nLs~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~--~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~ 236 (457)
T 1xm9_A 160 FFNATGCLRNLSS-ADAGRQTMRNYSGLIDSLMAYVQNCVAASRC--DDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYN 236 (457)
T ss_dssp HHHHHHHHHHHTT-SHHHHHHHTTSTTHHHHHHHHHHHHHHHTCT--TCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHT
T ss_pred HHHHHHHHHHHcc-CHHHHHHHHHcCCCHHHHHHHHHhhccccCC--chHHHHHHHHHHHhcccchhccCcchhhhcccc
Confidence 3456666655544 3555555553 6788888777655432111 1110000000 00
Q ss_pred --------HHHHHHHHhhhccC----CCccC--CCcchHHH--HHHHHHHHHHHHHhcCCCChhHHhHHHHHHHHHHHhc
Q 004950 393 --------QIIMAINALSKGFN----ERLVT--SSRPAIGL--MFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTL 456 (722)
Q Consensus 393 --------~~i~~l~~lakgf~----~~~~~--~~~~~~~~--~~~~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~l 456 (722)
..+.|++...+.-. +...+ ...+...+ .-..+.+.+...+.. .+++.++|+++.++..+...-
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~-~~~~~~~e~a~~aL~nl~~~~ 315 (457)
T 1xm9_A 237 ARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGK-SKKDATLEACAGALQNLTASK 315 (457)
T ss_dssp C----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTTCS
T ss_pred cccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhh-cCCHHHHHHHHHHHHHhccCc
Confidence 01112221111000 00000 00011111 123466677777765 456899999999998887643
Q ss_pred Cc---c-----c--ccchHHHHHHHHhcCChhhHHHHHHHHHHHHHHHhhhHHHHHH-hhhHHHHHHHHhhccCCCCCCC
Q 004950 457 GA---S-----V--FPYLPKALEQLLAESEPKEMAGFLVLLNQLICKFNTLVHDILD-EVFPAIAGRIFNIIPRDAFPSG 525 (722)
Q Consensus 457 g~---~-----v--~p~lp~li~~ll~~~~~~~~~~fL~~~~qli~~f~~~~~~~l~-~ll~~l~~~v~~~l~~~~~~~~ 525 (722)
++ . + ...+|.++. |+.+-+..-..+..|.+..+.. ..+....+. ..+++ +..+|... .
T Consensus 316 ~~~~~~~~~~~v~~~~~l~~Lv~-LL~~~~~~v~~~A~~aL~nls~--~~~~~~~i~~~~i~~----Lv~lL~~~----~ 384 (457)
T 1xm9_A 316 GLMSSGMSQLIGLKEKGLPQIAR-LLQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPE----VTRLLTSH----T 384 (457)
T ss_dssp SSHHHHHHHHHHTTSCCHHHHHH-HTTCSCHHHHHHHHHHHHHHHT--SGGGHHHHHHHTHHH----HHHTTTSC----C
T ss_pred CcchHHHHHHHHHHcCCchHHHH-HHhCCCHhHHHHHHHHHHHHhc--CHHHHHHHHHhhhHH----HHHhccCC----C
Confidence 32 1 1 356787777 5655555445667788887764 223333333 34444 46677743 1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCee-ecCCCCcCChHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 004950 526 PGTNTEEIREVQELQRTLYTFLHVIATHDLSSV-FLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLI 599 (722)
Q Consensus 526 p~~~~d~~r~~~~l~r~y~~fl~~i~~~~~~~v-l~s~~~~~~l~~~l~~l~~~~~~~~d~~~~k~a~~~l~~li 599 (722)
+....+ .++...-...+..+++.+.... .+. .. ..+..+.............|.|..++.++.
T Consensus 385 ~~~~~~-----~~v~~~~l~~l~ni~~~~~~~~~~i~--~~----g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~ 448 (457)
T 1xm9_A 385 GNTSNS-----EDILSSACYTVRNLMASQPQLAKQYF--SS----SMLNNIINLCRSSASPKAAEAARLLLSDMW 448 (457)
T ss_dssp SCSTTH-----HHHHHHHHHHHHHHHTTCTHHHHHHC--CH----HHHHHHHHHHHCTTCHHHHHHHHHHHHTTS
T ss_pred CCCCCc-----HHHHHHHHHHHHHHHhcCHHHHHHHH--Hc----CCHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 221111 2366666777777776554211 111 11 134444432222237788999999887643
No 54
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=90.88 E-value=25 Score=39.75 Aligned_cols=252 Identities=13% Similarity=0.068 Sum_probs=130.7
Q ss_pred CChhhHHHHHHHHHHhcccCchhh-hhcccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHh-----hcCCCh
Q 004950 187 RNVEEVEAALTLLYALGESMSEEA-MRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQ-----EHTQYI 260 (722)
Q Consensus 187 ~~W~~~EaaL~~l~~~gE~i~~~~-~~~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~-----~~p~~L 260 (722)
.++...+.|+.+|..+++.-.... .......++.++..|-.+ +.+.++..+...+...+.--+ .....+
T Consensus 26 ~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~-----~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i 100 (644)
T 2z6h_A 26 EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT-----NDVETARCTAGTLHNLSHHREGLLAIFKSGGI 100 (644)
T ss_dssp SCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSC-----CCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHH
T ss_pred CCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcC-----CCHHHHHHHHHHHHHHhcChhhHHHHHHcCCH
Confidence 578889999999999988754221 111124466666665431 346788888777765432211 122344
Q ss_pred HHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHh---hccch--HHHHHHHHHhhhhhhhhccCCcccccCCCCchhhH
Q 004950 261 PVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLL---KAKLV--PFIENILQSLQDTIARFTSMNYASKELSGSEDGSH 335 (722)
Q Consensus 261 ~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~---r~~L~--~~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~ 335 (722)
+.++.. +.++++.++..|+.++.+++..- +..+. ..++.++..++. . ..+.+..
T Consensus 101 ~~Lv~l------L~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~----~-----------~~~~~~~ 159 (644)
T 2z6h_A 101 PALVKM------LGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK----T-----------NVKFLAI 159 (644)
T ss_dssp HHHHHH------TTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC----C-----------CHHHHHH
T ss_pred HHHHHH------HhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCc----C-----------CHHHHHH
Confidence 444433 34567889999999999999763 22221 233433333321 1 1111222
Q ss_pred HHHHHHHHHccCCCChhhhHHHHH-HhHHHHHHHHHHHHHhhhccCCchhhhHHHhHHHHHHHHHHhhhccCCCccCCCc
Q 004950 336 IFEAIGLLIGMEDVPPEKQSDYLS-SLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSR 414 (722)
Q Consensus 336 L~Eaig~Lis~~~~~~e~~~~~l~-~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~lakgf~~~~~~~~~ 414 (722)
..++++.+... .++.+....+ ..+.+++. ++... +. +. . ......++..++.. . .
T Consensus 160 a~~~L~~La~~---~~~~~~~i~~~g~v~~Lv~----lL~~~---~~-~~--~---~~~a~~~L~nLs~~--~----~-- 215 (644)
T 2z6h_A 160 TTDCLQILAYG---NQESKLIILASGGPQALVN----IMRTY---TY-EK--L---LWTTSRVLKVLSVC--S----S-- 215 (644)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHTTHHHHHHH----HHTTC---CC-HH--H---HHHHHHHHHHHTTC--T----T--
T ss_pred HHHHHHHHHhc---CcHHHHHHHHcCChHHHHH----HHHcC---Ch-HH--H---HHHHHHHHHHHhcC--c----c--
Confidence 23344444432 3444433333 22333332 33211 11 11 1 23455566666521 1 0
Q ss_pred chHHHHH-HHHHHHHHHHHhcCCCChhHHhHHHHHHHHHHHhcCcc--cccchHHHHHHHHhcCChhhHHHHHHHHHHHH
Q 004950 415 PAIGLMF-KQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGAS--VFPYLPKALEQLLAESEPKEMAGFLVLLNQLI 491 (722)
Q Consensus 415 ~~~~~~~-~~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~lg~~--v~p~lp~li~~ll~~~~~~~~~~fL~~~~qli 491 (722)
....+. ..+++.+..++. ..+..+++.+..+++.+....... +.+.+|.++. ++..-+..-.....+.++.+.
T Consensus 216 -~~~~l~~~g~l~~L~~ll~--~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~-lL~~~d~~v~~~a~~aL~~L~ 291 (644)
T 2z6h_A 216 -NKPAIVEAGGMQALGLHLT--DPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQ-LLGSDDINVVTCAAGILSNLT 291 (644)
T ss_dssp -HHHHHHHTTHHHHHHTTTT--CSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHH-HTTCSCHHHHHHHHHHHHHHH
T ss_pred -cHHHHHHCCCHHHHHHHHh--cCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHH-HHcCCCHHHHHHHHHHHHHHH
Confidence 011122 236677777665 457889999999999887654322 2345555555 344334333455667777766
Q ss_pred H
Q 004950 492 C 492 (722)
Q Consensus 492 ~ 492 (722)
.
T Consensus 292 ~ 292 (644)
T 2z6h_A 292 C 292 (644)
T ss_dssp T
T ss_pred c
Confidence 5
No 55
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=90.84 E-value=29 Score=40.48 Aligned_cols=333 Identities=15% Similarity=0.191 Sum_probs=174.9
Q ss_pred CChhhHHHHHHHHHHhcccCchhhhhcc--cccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHh-hc--CCC--
Q 004950 187 RNVEEVEAALTLLYALGESMSEEAMRTG--AGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQ-EH--TQY-- 259 (722)
Q Consensus 187 ~~W~~~EaaL~~l~~~gE~i~~~~~~~~--~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~-~~--p~~-- 259 (722)
.+=..-|.|+-+++..+.. +.. ++. +... +.+..+++ ..++.+|.-+...++|...... .. +.+
T Consensus 302 ~~~~~q~~A~~al~~aa~~-~~~--R~~I~~~gv-~~L~~Ll~-----s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~ 372 (810)
T 3now_A 302 DDELQQRVACECLIAASSK-KDK--AKALCEQGV-DILKRLYH-----SKNDGIRVRALVGLCKLGSYGGQDAAIRPFGD 372 (810)
T ss_dssp SCHHHHHHHHHHHHHHTTS-HHH--HHTTHHHHH-HHHHHHTT-----CSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTT
T ss_pred CCHHHHHHHHHHHHHHcCC-cHH--HHHHHHcCc-HHHHHHHc-----CCCHHHHHHHHHHHHHhccccccCccccchhh
Confidence 3444557888888887665 211 110 1112 23333332 2346789989999999875443 11 222
Q ss_pred --hHHHHHHhccccCCCCC--CchhHHHHHHHHHHHHH--Hhhccch---HHHHHHHHHhhhhhhhhccCCcccccCCCC
Q 004950 260 --IPVVLAAFLDERGIHHP--NVHVSRRASYLFMRVVK--LLKAKLV---PFIENILQSLQDTIARFTSMNYASKELSGS 330 (722)
Q Consensus 260 --L~~vL~~~l~~~Gl~~~--~~~V~~ra~ylf~r~~k--~~r~~L~---~~~~~il~~l~~ll~~~~~~~~~~~~~~~~ 330 (722)
++++++.|. +.+.++ +..++.-|+-++.+++. +.|..++ +.++.+++.+..
T Consensus 373 g~i~~Lv~~l~--~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s------------------ 432 (810)
T 3now_A 373 GAALKLAEACR--RFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARG------------------ 432 (810)
T ss_dssp THHHHHHHHHH--HHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHT------------------
T ss_pred ccHHHHHHHHH--HHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCC------------------
Confidence 667777777 666666 78899999999999984 4555554 356666655532
Q ss_pred chhhHHHHHHHHHHccCCCChhh------------------------hHHHH--------H-HhHHHHHHHHHHHHHhhh
Q 004950 331 EDGSHIFEAIGLLIGMEDVPPEK------------------------QSDYL--------S-SLLTPLCQQVQTMLLDAK 377 (722)
Q Consensus 331 ~d~l~L~Eaig~Lis~~~~~~e~------------------------~~~~l--------~-~ll~pl~~~l~~~~~~~~ 377 (722)
++.--.|++...|.-...-++++ ..+.. + ..++++++- +.
T Consensus 433 ~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~L----L~--- 505 (810)
T 3now_A 433 GNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCAL----AK--- 505 (810)
T ss_dssp TCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHH----HT---
T ss_pred CChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHH----Hc---
Confidence 01123333333333322111000 00011 1 122222221 21
Q ss_pred ccCCchhhhHHHhHHHHHHHHHHhhhccCCCccCCCcchHHH-H-HHHHHHHHHHHHhcCCCChhHHhHHHHHHHHHHHh
Q 004950 378 MLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGL-M-FKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDT 455 (722)
Q Consensus 378 ~~~~~~~~~~~~~~~~~i~~l~~lakgf~~~~~~~~~~~~~~-~-~~~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~ 455 (722)
+. + .+. -.+...++++++. -++ ... + -..+++.++.++. .++..+++.+..++.++...
T Consensus 506 s~-s-~~v-----qe~Aa~aL~NLA~-d~~---------~r~~Vv~~Gaip~Lv~LL~--s~~~~~k~~Aa~AL~nL~~~ 566 (810)
T 3now_A 506 TE-S-HNS-----QELIARVLNAVCG-LKE---------LRGKVVQEGGVKALLRMAL--EGTEKGKRHATQALARIGIT 566 (810)
T ss_dssp CC-C-HHH-----HHHHHHHHHHHHT-SHH---------HHHHHHHTTHHHHHHHHHH--SSCHHHHHHHHHHHHHHHHH
T ss_pred CC-C-HHH-----HHHHHHHHHHHcC-CHH---------HHHHHHHCCCHHHHHHHHc--cCCHHHHHHHHHHHHHHhcC
Confidence 11 1 111 2456777777762 111 122 2 2237888888887 56778899999999998876
Q ss_pred cCcc-------cccchHHHHHHHHhcC-ChhhHHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHhhccCCCCCCCCC
Q 004950 456 LGAS-------VFPYLPKALEQLLAES-EPKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPG 527 (722)
Q Consensus 456 lg~~-------v~p~lp~li~~ll~~~-~~~~~~~fL~~~~qli~~f~~~~~~~l~~ll~~l~~~v~~~l~~~~~~~~p~ 527 (722)
-.+. +...+|+++. |+..- +.-...+.++.+..+...-.+....+++. -.+.++..+|... +
T Consensus 567 ~~p~~~~~~~~~~~aIppLv~-LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~a---G~l~~Lv~LL~s~----~-- 636 (810)
T 3now_A 567 INPEVSFSGQRSLDVIRPLLN-LLQQDCTALENFESLMALTNLASMNESVRQRIIKE---QGVSKIEYYLMED----H-- 636 (810)
T ss_dssp SCHHHHTTTHHHHHTHHHHHH-TTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT---THHHHHHHHHHSC----C--
T ss_pred CChhhhhcchhhhcHHHHHHH-HhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHc---CCHHHHHHHHcCC----C--
Confidence 4332 2345777777 44322 22222356666665553211111122221 1234445555532 1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhcCCC-eeecCCCCcCChHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 004950 528 TNTEEIREVQELQRTLYTFLHVIATHDLS-SVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIK 600 (722)
Q Consensus 528 ~~~d~~r~~~~l~r~y~~fl~~i~~~~~~-~vl~s~~~~~~l~~~l~~l~~~~~~~~d~~~~k~a~~~l~~li~ 600 (722)
+. +++.-...+..++++... ..+. + +.+ .+..++. .++..|..+++.|...+.++..
T Consensus 637 --~~-------Vq~~A~~~L~NLa~~~~~~~~~v-~-~~g----~l~~Lv~-LL~s~d~~vq~~Aa~ALanLt~ 694 (810)
T 3now_A 637 --LY-------LTRAAAQCLCNLVMSEDVIKMFE-G-NND----RVKFLAL-LCEDEDEETATACAGALAIITS 694 (810)
T ss_dssp --TT-------HHHHHHHHHHHHTTSHHHHHHHH-S-SSS----HHHHHHH-GGGCSSHHHHHHHHHHHHHHHH
T ss_pred --HH-------HHHHHHHHHHHHhCChHHHHHHH-h-ccC----cHHHHHH-HhcCCCHHHHHHHHHHHHHHhC
Confidence 12 777777777777753211 0011 1 111 3445554 3456889999999999999884
No 56
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=90.45 E-value=17 Score=37.01 Aligned_cols=176 Identities=16% Similarity=0.067 Sum_probs=93.8
Q ss_pred hHHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHH------HhhcCCChHHHH
Q 004950 191 EVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKF------IQEHTQYIPVVL 264 (722)
Q Consensus 191 ~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~------~~~~p~~L~~vL 264 (722)
+.+.|+..|..+.+.++....=...+.++.++.. ....++|.||..+.++++.-+.= .-..-.-+|+.+
T Consensus 56 ~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~-----lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll 130 (296)
T 1xqr_A 56 EREGALELLADLCENMDNAADFCQLSGMHLLVGR-----YLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLL 130 (296)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHT-----TTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHH-----HHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHH
Confidence 4566677776666665421100012344444441 23347889999999999876521 111234577777
Q ss_pred HHhccccCCCCCCchhHHHHHHHHHHHHHHhhccchHHHH-HHHHHhhhhhhhhccCCcccccCCCCchhhHHHHHHHHH
Q 004950 265 AAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIE-NILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLL 343 (722)
Q Consensus 265 ~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L~~~~~-~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~L~Eaig~L 343 (722)
..+-+ +++..||..|++++..+|+........++. ..+..+..+|... ...-+....-+++.+
T Consensus 131 ~LL~~-----~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~-----------d~~v~~~A~~aLs~L 194 (296)
T 1xqr_A 131 RLLDR-----DACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ-----------VQKLKVKSAFLLQNL 194 (296)
T ss_dssp HHHHH-----CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS-----------CHHHHHHHHHHHHHH
T ss_pred HHHcc-----CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCC-----------CHHHHHHHHHHHHHH
Confidence 66542 246789999999999999754432222211 2333333333200 112233444455555
Q ss_pred HccCCCChhhhHHHHH-HhHHHHHHHHHHHHHhhhccCCchhhhHHHhHHHHHHHHHHhhhc
Q 004950 344 IGMEDVPPEKQSDYLS-SLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKG 404 (722)
Q Consensus 344 is~~~~~~e~~~~~l~-~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~lakg 404 (722)
... +++.+....+ .++.|++.-+ .. . +. .. ..+.+.++++++++
T Consensus 195 ~~~---~~~~~~~vv~~g~i~~Lv~LL----~~---~-d~-~v-----~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 195 LVG---HPEHKGTLCSMGMVQQLVALV----RT---E-HS-PF-----HEHVLGALCSLVTD 239 (296)
T ss_dssp HHH---CGGGHHHHHHTTHHHHHHHHH----TS---C-CS-TH-----HHHHHHHHHHHHTT
T ss_pred HhC---ChHHHHHHHHcCCHHHHHHHH----cC---C-Ch-hH-----HHHHHHHHHHHHhC
Confidence 554 4444444444 4666666433 21 1 11 11 35788888988877
No 57
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=90.30 E-value=2.3 Score=42.78 Aligned_cols=104 Identities=9% Similarity=0.043 Sum_probs=61.9
Q ss_pred CChhhHHHHHHHHHHhcccCchhhhhcc-cccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhhc-------CC
Q 004950 187 RNVEEVEAALTLLYALGESMSEEAMRTG-AGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEH-------TQ 258 (722)
Q Consensus 187 ~~W~~~EaaL~~l~~~gE~i~~~~~~~~-~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~~-------p~ 258 (722)
.+|.+...|+=.++.+-+..+.....+. ...+......+-. ...+.|..|....++++..+.+..... ..
T Consensus 21 k~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk--~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~ 98 (278)
T 4ffb_C 21 KLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQ--YITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNIT 98 (278)
T ss_dssp SSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHH--HTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHH--HhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHH
Confidence 7899999999999876655443221111 1123333333322 234678899999999998877654321 23
Q ss_pred ChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHH
Q 004950 259 YIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVK 293 (722)
Q Consensus 259 ~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k 293 (722)
+...+++.++. +|+.++.+++|..+.-++..++.
T Consensus 99 ~~~~~l~~lve-K~l~~~k~~~~~~a~~~l~~~~~ 132 (278)
T 4ffb_C 99 LISTWTPLLVE-KGLTSSRATTKTQSMSCILSLCG 132 (278)
T ss_dssp HHHHHHHHHHH-HTSSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHhcCccHHHHHHHHHHHHHHHH
Confidence 45667777765 56777777787777555555554
No 58
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=89.51 E-value=7 Score=36.78 Aligned_cols=186 Identities=16% Similarity=0.137 Sum_probs=102.4
Q ss_pred HHHHHHHhhhccCCccchhhHHHHHHHHHHHhccCCCChHHHHHHH-HHHHHHHHHHcccCcccccCCccCCCCChhHHH
Q 004950 67 EVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLSPLKEEQRLHA-GQILEVILTQIRYDPMYRNNLDVLDKIGIEEED 145 (722)
Q Consensus 67 ~~~plvL~~~~~~d~~~~~~~~~F~~~~l~~lk~~~~l~~~~~~~l-~~Ll~~li~km~yp~~~~~~~d~~~~~~~ede~ 145 (722)
...|.+..++.++|.++...+...+..+.. ..+ +....+. ...+..+++-++-++ .
T Consensus 12 ~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~---~~~---~~~~~i~~~g~i~~L~~lL~~~~-------------~---- 68 (210)
T 4db6_A 12 SELPQMVQQLNSPDQQELQSALRKLSQIAS---GGN---EQIQAVIDAGALPALVQLLSSPN-------------E---- 68 (210)
T ss_dssp -CHHHHHHHTTCSCHHHHHHHHHHHHHHHT---SCH---HHHHHHHHTTHHHHHHHHTTCSC-------------H----
T ss_pred chhHHHHHHhcCCCHHHHHHHHHHHHHHHc---CCH---HHHHHHHHcCCHHHHHHHHcCCC-------------H----
Confidence 566777788877777765555555544431 111 1111111 135555555554210 1
Q ss_pred HHHHHHHHHHHHHHHHHHcChhhHHHHH----HHHHHHHhcCCCCCChhhHHHHHHHHHHhcccCchhhhh-cccccHHh
Q 004950 146 RMVEYRKDLLVLLRSVGRVAPEVTQVFI----RNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMR-TGAGHLSE 220 (722)
Q Consensus 146 ~F~e~Rk~l~~ll~~i~~l~~~l~l~~i----~~~l~~~l~~~~~~~W~~~EaaL~~l~~~gE~i~~~~~~-~~~~~l~~ 220 (722)
+.|......+.+++.-.++....++ -+.+.+.+.+ .+....+.|+.+++.++..-+..... -..+.++.
T Consensus 69 ---~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 142 (210)
T 4db6_A 69 ---QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS---PNEQILQEALWALSNIASGGNEQIQAVIDAGALPA 142 (210)
T ss_dssp ---HHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTC---SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHH
T ss_pred ---HHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcC---CcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHH
Confidence 2455555666666544443322222 1333334443 56888899999999998754322100 01234454
Q ss_pred HHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhh------cCCChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHH
Q 004950 221 LVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQE------HTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVK 293 (722)
Q Consensus 221 l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~------~p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k 293 (722)
++..+ ..+++.++..++++++..+..-.. ....++.+++. +.+++++||.+|+.++.++++
T Consensus 143 L~~ll------~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~l------l~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 143 LVQLL------SSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQL------QSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHT------TCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHG------GGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHH------cCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHH------HhCCCHHHHHHHHHHHHHHhc
Confidence 44443 235678999999999888764221 22334444332 235788999999999998864
No 59
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=88.91 E-value=1.6 Score=41.48 Aligned_cols=105 Identities=16% Similarity=0.208 Sum_probs=68.8
Q ss_pred HHHHHHhcCCCCCChhhHHHHHHHHHHhcccCchhhhh-cccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHH
Q 004950 175 NSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMR-TGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFI 253 (722)
Q Consensus 175 ~~l~~~l~~~~~~~W~~~EaaL~~l~~~gE~i~~~~~~-~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~ 253 (722)
+.+...+.+ .++...+.|+.+|+.++..-+..... -..+.++.++..| ..+++.|+..++++++..+..-
T Consensus 15 ~~l~~LL~s---~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL------~~~~~~v~~~a~~~L~~l~~~~ 85 (210)
T 4db6_A 15 PQMVQQLNS---PDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLL------SSPNEQILQEALWALSNIASGG 85 (210)
T ss_dssp HHHHHHTTC---SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT------TCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHhcC---CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHH------cCCCHHHHHHHHHHHHHHhcCC
Confidence 455555544 67899999999999998654322100 0123444444443 3357889999999999876321
Q ss_pred h------hcCCChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHH
Q 004950 254 Q------EHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKL 294 (722)
Q Consensus 254 ~------~~p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~ 294 (722)
. .+...+|.++..+- ++++.++..|+.++.+++..
T Consensus 86 ~~~~~~i~~~g~i~~L~~lL~------~~~~~v~~~a~~~L~~l~~~ 126 (210)
T 4db6_A 86 NEQIQAVIDAGALPALVQLLS------SPNEQILQEALWALSNIASG 126 (210)
T ss_dssp HHHHHHHHHTTCHHHHHHHTT------CSCHHHHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHCCCHHHHHHHHc------CCcHHHHHHHHHHHHHHHcC
Confidence 1 13456666665543 46788999999999999863
No 60
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=88.88 E-value=9.9 Score=41.47 Aligned_cols=249 Identities=12% Similarity=0.098 Sum_probs=129.3
Q ss_pred CChhhHHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhh------cCCCh
Q 004950 187 RNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQE------HTQYI 260 (722)
Q Consensus 187 ~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~------~p~~L 260 (722)
.+|...+.++..|+.++..-.....-...+.++.++..+ ..+++.++..+.+++...+..-.. ....+
T Consensus 72 ~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL------~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i 145 (529)
T 1jdh_A 72 NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKML------GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGL 145 (529)
T ss_dssp CCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHT------TCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHH
T ss_pred CCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHH------cCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCH
Confidence 479889999999999876411100000124455554443 235588999999999988765332 23345
Q ss_pred HHHHHHhccccCCCCCCchhHHHHHHHHHHHHH---HhhccchH--HHHHHHHHhhhhhhhhccCCcccccCCCCchhhH
Q 004950 261 PVVLAAFLDERGIHHPNVHVSRRASYLFMRVVK---LLKAKLVP--FIENILQSLQDTIARFTSMNYASKELSGSEDGSH 335 (722)
Q Consensus 261 ~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k---~~r~~L~~--~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~ 335 (722)
|..+..+ .+++.+++..++.++..++. +++..+.. -++.++..+++ . ..++ .
T Consensus 146 ~~L~~ll------~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~----~-----------~~~~--~ 202 (529)
T 1jdh_A 146 QKMVALL------NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT----Y-----------TYEK--L 202 (529)
T ss_dssp HHHHHGG------GCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH----C-----------CCHH--H
T ss_pred HHHHHHH------hcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHh----C-----------ChHH--H
Confidence 4444433 34678898888888988873 44444432 34444444432 1 1111 1
Q ss_pred HHHHHHHHHccCCCChhhhHHHHH-HhHHHHHHHHHHHHHhhhccCCchhhhHHHhHHHHHHHHHHhhhccCCCccCCCc
Q 004950 336 IFEAIGLLIGMEDVPPEKQSDYLS-SLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSR 414 (722)
Q Consensus 336 L~Eaig~Lis~~~~~~e~~~~~l~-~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~lakgf~~~~~~~~~ 414 (722)
...+.+.|.... ..++.+...++ ..+.+++.-+ . . ++ . .. ....+.++++++++.+...
T Consensus 203 ~~~a~~~L~~l~-~~~~~~~~~~~~g~~~~L~~ll----~---~-~~-~--~~---~~~a~~~L~~l~~~~~~~~----- 262 (529)
T 1jdh_A 203 LWTTSRVLKVLS-VCSSNKPAIVEAGGMQALGLHL----T---D-PS-Q--RL---VQNCLWTLRNLSDAATKQE----- 262 (529)
T ss_dssp HHHHHHHHHHHT-TSTTHHHHHHHTTHHHHHHTTT----T---S-SC-H--HH---HHHHHHHHHHHHTTCTTCS-----
T ss_pred HHHHHHHHHHHh-cCcccHHHHHHCCCHHHHHHHH----h---C-CC-h--HH---HHHHHHHHHHHhcCChhhH-----
Confidence 222333332222 23333333322 3333333222 1 1 11 1 11 2456677777776543211
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCChhHHhHHHHHHHHHHHhcC---ccc--ccchHHHHHHHHhcCC-hhhHHHHHHHHH
Q 004950 415 PAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLG---ASV--FPYLPKALEQLLAESE-PKEMAGFLVLLN 488 (722)
Q Consensus 415 ~~~~~~~~~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~lg---~~v--~p~lp~li~~ll~~~~-~~~~~~fL~~~~ 488 (722)
....+.+.+...+. ..+..+++.++.++..+...-. ..+ ...+|.++..+....+ ..-....++.++
T Consensus 263 -----~~~~~i~~L~~ll~--~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~ 335 (529)
T 1jdh_A 263 -----GMEGLLGTLVQLLG--SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALR 335 (529)
T ss_dssp -----CCHHHHHHHHHHTT--CSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -----HHHhHHHHHHHHHc--CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 12356777777775 6788999999999988855311 001 1345666664443222 222233445555
Q ss_pred HHH
Q 004950 489 QLI 491 (722)
Q Consensus 489 qli 491 (722)
.+.
T Consensus 336 nl~ 338 (529)
T 1jdh_A 336 HLT 338 (529)
T ss_dssp HHT
T ss_pred HHH
Confidence 554
No 61
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=88.39 E-value=43 Score=38.93 Aligned_cols=252 Identities=13% Similarity=0.064 Sum_probs=125.1
Q ss_pred CChhhHHHHHHHHHHhcccCchhh-hhcccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHh-----hcCCCh
Q 004950 187 RNVEEVEAALTLLYALGESMSEEA-MRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQ-----EHTQYI 260 (722)
Q Consensus 187 ~~W~~~EaaL~~l~~~gE~i~~~~-~~~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~-----~~p~~L 260 (722)
.+....|.|+.+|+.+++.-.... .......++.++..|-.. ..+.+|..++..+...+.--. ....-+
T Consensus 162 ~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~-----~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I 236 (780)
T 2z6g_A 162 EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT-----NDVETARCTSGTLHNLSHHREGLLAIFKSGGI 236 (780)
T ss_dssp SCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHH
T ss_pred CCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCC-----CCHHHHHHHHHHHHHHhCCchhHHHHHHcCCH
Confidence 467788999999999987532111 111123455555555432 356788888888876443211 112345
Q ss_pred HHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhh---ccch--HHHHHHHHHhhhhhhhhccCCcccccCCCCchhhH
Q 004950 261 PVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLK---AKLV--PFIENILQSLQDTIARFTSMNYASKELSGSEDGSH 335 (722)
Q Consensus 261 ~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r---~~L~--~~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~ 335 (722)
+.++..+ .++++.|+..|+.++..+|.... ..+. .-++.++..+.+ . ..+-+..
T Consensus 237 ~~Lv~lL------~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~----~-----------~~~v~~~ 295 (780)
T 2z6g_A 237 PALVNML------GSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK----T-----------NVKFLAI 295 (780)
T ss_dssp HHHHHHT------TCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC----C-----------CHHHHHH
T ss_pred HHHHHHH------cCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhc----C-----------CHHHHHH
Confidence 5444433 34578899999999999997632 2221 123333333221 0 0111223
Q ss_pred HHHHHHHHHccCCCChhhhHHHHH-HhHHHHHHHHHHHHHhhhccCCchhhhHHHhHHHHHHHHHHhhhccCCCccCCCc
Q 004950 336 IFEAIGLLIGMEDVPPEKQSDYLS-SLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSR 414 (722)
Q Consensus 336 L~Eaig~Lis~~~~~~e~~~~~l~-~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~lakgf~~~~~~~~~ 414 (722)
..++++.+... .++.+....+ ..+.+++. ++.. ++.+. . ......++..++.. + ..
T Consensus 296 a~~aL~~La~~---~~e~~~~i~~~~~i~~Lv~----lL~~----~~~~~--~---~~~a~~aL~~Ls~~-~-----~~- 352 (780)
T 2z6g_A 296 TTDCLQILAYG---NQESKLIILASGGPQALVN----IMRT----YTYEK--L---LWTTSRVLKVLSVC-S-----SN- 352 (780)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHTTTHHHHHHH----HHTT----CCCHH--H---HHHHHHHHHHHHTS-T-----TH-
T ss_pred HHHHHHHHhcC---ChHHHHHHHHcCCHHHHHH----HHhc----CCHHH--H---HHHHHHHHHHhhcC-h-----HH-
Confidence 33445544331 3333333322 22333332 2321 11111 1 12334445555431 1 00
Q ss_pred chHHHH-HHHHHHHHHHHHhcCCCChhHHhHHHHHHHHHHHhcCcc--cccchHHHHHHHHhcCChhhHHHHHHHHHHHH
Q 004950 415 PAIGLM-FKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGAS--VFPYLPKALEQLLAESEPKEMAGFLVLLNQLI 491 (722)
Q Consensus 415 ~~~~~~-~~~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~lg~~--v~p~lp~li~~ll~~~~~~~~~~fL~~~~qli 491 (722)
...+ -..+++.+...+. ..+..++..+..++..++...... ....+|.++. ++..-+..-....++.++.+.
T Consensus 353 --~~~i~~~g~l~~Ll~lL~--~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~-lL~~~d~~vr~~A~~aL~~L~ 427 (780)
T 2z6g_A 353 --KPAIVEAGGMQALGLHLT--DPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQ-LLGSDDINVVTCAAGILSNLT 427 (780)
T ss_dssp --HHHHHHTTHHHHHGGGTT--CSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHH-HTTCSCHHHHHHHHHHHHHHT
T ss_pred --HHHHHHhchHHHHHHHHc--CCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHH-HHcCCCHHHHHHHHHHHHHHH
Confidence 1111 1235666666665 456778888888888888765432 2234455554 333333333345556676665
Q ss_pred H
Q 004950 492 C 492 (722)
Q Consensus 492 ~ 492 (722)
.
T Consensus 428 ~ 428 (780)
T 2z6g_A 428 C 428 (780)
T ss_dssp S
T ss_pred h
Confidence 4
No 62
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=87.26 E-value=58 Score=39.17 Aligned_cols=425 Identities=11% Similarity=0.120 Sum_probs=200.1
Q ss_pred CChhhHHHHHHHHHHhcccCchhh-hh-cccccHHhHHHHHHhC-CCCC-------C-----------ChhHHHHHHH-H
Q 004950 187 RNVEEVEAALTLLYALGESMSEEA-MR-TGAGHLSELVPMLLQT-KLPC-------H-----------SNRLVALVYL-E 244 (722)
Q Consensus 187 ~~W~~~EaaL~~l~~~gE~i~~~~-~~-~~~~~l~~l~~~l~~~-~i~~-------~-----------~hp~V~~~~~-e 244 (722)
.+|+-.+.++-.=|.+++.+-.+. .+ .-...+.+++..++.. ..|. . .-....+-.+ +
T Consensus 356 ~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd 435 (1023)
T 4hat_C 356 EERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSERE 435 (1023)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHH
Confidence 467666777766677777543221 11 1135677788877764 2332 0 0111222111 4
Q ss_pred HHHhhHHHHhhcCCChHHHHHHhccccCCC--CCCchhHHHHHHHHHHHHHHhhcc-chHHHHHHHHHhhhhhhhhccCC
Q 004950 245 TVTRYMKFIQEHTQYIPVVLAAFLDERGIH--HPNVHVSRRASYLFMRVVKLLKAK-LVPFIENILQSLQDTIARFTSMN 321 (722)
Q Consensus 245 ~i~RY~~~~~~~p~~L~~vL~~~l~~~Gl~--~~~~~V~~ra~ylf~r~~k~~r~~-L~~~~~~il~~l~~ll~~~~~~~ 321 (722)
+++--+.-. .++.++..++.+- ..+. +++=+.+.+++++|.-+...+... ..+++++++..+-.+...+.
T Consensus 436 ~L~~l~~l~--~~~~~~~~~~~l~--~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~--- 508 (1023)
T 4hat_C 436 VLVYLTHLN--VIDTEEIMISKLA--RQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKR--- 508 (1023)
T ss_dssp HHHHHHHHC--HHHHHHHHHHHHH--HHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHhccC--HHHHHHHHHHHHH--HHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccc---
Confidence 443222211 2355555555543 1122 356678899999999888766543 56788888886665543211
Q ss_pred cccccCCCCchhhHHHHHHHHHHccCCCCh--hhhHHHHHHhHHHHHHHHHHHHHhhhccCCchhhhHHHhHHHHHHHHH
Q 004950 322 YASKELSGSEDGSHIFEAIGLLIGMEDVPP--EKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAIN 399 (722)
Q Consensus 322 ~~~~~~~~~~d~l~L~Eaig~Lis~~~~~~--e~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 399 (722)
+.|....+-.++..++|.- +. ....++ +.|++..+-..+.. +.+..+ ..+.+.+.-+.
T Consensus 509 -------~~d~k~~v~~t~~~~lGry--~~wl~~~~~~----L~~vl~~L~~~l~~-----~~~~v~--~~A~~al~~l~ 568 (1023)
T 4hat_C 509 -------GKDNKAVVASDIMYVVGQY--PRFLKAHWNF----LRTVILKLFEFMHE-----THEGVQ--DMACDTFIKIV 568 (1023)
T ss_dssp -------SHHHHHHHHHHHHHHHHTC--HHHHHHCHHH----HHHHHHHHHHHTTC-----SCHHHH--HHHHHHHHHHH
T ss_pred -------cCcchHHHHHHHHHHHHHH--HHHHhccHHH----HHHHHHHHHHHhhc-----CCHHHH--HHHHHHHHHHH
Confidence 2344555666777888742 11 122344 44444444333311 100001 01233333333
Q ss_pred H-hhhccCCCccCCCcchHHHHHHHHHHHHHHHHhcCCCChhHHhHHHHHHHHHHHhcCccc--ccchHHHHH-------
Q 004950 400 A-LSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASV--FPYLPKALE------- 469 (722)
Q Consensus 400 ~-lakgf~~~~~~~~~~~~~~~~~~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~lg~~v--~p~lp~li~------- 469 (722)
. ..+.+.... +.+ ....+.++.+.+..+...+ ...-+..+..++..++...++.- ..++..++.
T Consensus 569 ~~c~~~l~~~~-~~e---~~p~~~~il~~l~~~~~~l--~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~ 642 (1023)
T 4hat_C 569 QKCKYHFVIQQ-PRE---SEPFIQTIIRDIQKTTADL--QPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWD 642 (1023)
T ss_dssp HHHTHHHHSCC-TTC---SSCHHHHHHHTHHHHHTTS--CHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHhhccC-CCC---CchhHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHH
Confidence 2 111121111 111 1124556666666666643 34455677888888888877442 112222222
Q ss_pred HHHhc----CC-------hhhHHHHHHHHHHHHHHHhhhHHHHHHhhhHHHH---HHHHhhc----cCCCCCCCCCCCCH
Q 004950 470 QLLAE----SE-------PKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIA---GRIFNII----PRDAFPSGPGTNTE 531 (722)
Q Consensus 470 ~ll~~----~~-------~~~~~~fL~~~~qli~~f~~~~~~~l~~ll~~l~---~~v~~~l----~~~~~~~~p~~~~d 531 (722)
.+... .+ ..++...+...+.+....|..+.+.+..+++-++ ....+.+ ...+ ...+.+.
T Consensus 643 ~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~~f~~~~~~i~~~~l~~y~~~s~~i~~~~~~~g---~~~~~~~ 719 (1023)
T 4hat_C 643 TIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRAVSSMISAQVAAEG---LIATKTP 719 (1023)
T ss_dssp HHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---GGGGGSH
T ss_pred HHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---chhhccH
Confidence 22210 00 1244444444445555555544444443333221 1112222 1111 1123445
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeeecCCCCcCChHHHHHHHH-Hhhc---CCCchHHHHHHHHHHHHHHHHhhCCCC
Q 004950 532 EIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLL-YTSC---NHKDYLVRKACVQIFIRLIKDWCARPF 607 (722)
Q Consensus 532 ~~r~~~~l~r~y~~fl~~i~~~~~~~vl~s~~~~~~l~~~l~~l~-~~~~---~~~d~~~~k~a~~~l~~li~~~~~~~~ 607 (722)
..|..+-++|..+.++.+.+.+....=.+. ...++.++.+++ .|.. +.+||..- ..++-+|...+..
T Consensus 720 ~~r~~r~ik~~il~l~~~~i~~~~~~~~~~---~~~~~~l~~~vl~dY~~~~~~~r~~~vL----~l~s~iv~~~~~~-- 790 (1023)
T 4hat_C 720 KVRGLRTIKKEILKLVETYISKARNLDDVV---KVLVEPLLNAVLEDYMNNVPDARDAEVL----NCMTTVVEKVGHM-- 790 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCHHHHH---HHTHHHHHHHHHHHHHHSCGGGCCHHHH----HHHHHHHHHHGGG--
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHH---HHhHHHHHHHHHHHHHhCChhhccHHHH----HHHHHHHHHHHHh--
Confidence 678999999999999999997654311111 112444555444 2332 33566553 4455566555532
Q ss_pred CCCCchhHHHHHHHhhhhhhhhhcccCCCCCCCchhHHHHHHHHHHHHHHHHHHhhhHH
Q 004950 608 VEEKVPGFQSFMIEAFAMNCCLYSVLDKSFEFGDANTLVLFGEIVLAQKVMYEKFGNDF 666 (722)
Q Consensus 608 ~~~~~~gf~~fl~~~~~~~~~~~~~~~~~F~~~Da~~~~~l~eia~~l~~l~~~~g~e~ 666 (722)
..++.. .+.+.+.. |.+.+.. .+| .|.= ..-.+.-.+++++.+++...+
T Consensus 791 ---~~~~~~-~il~~vf~-~Tl~mi~-~~~--~~~P--e~r~~ff~ll~~~~~~~f~~~ 839 (1023)
T 4hat_C 791 ---IPQGVI-LILQSVFE-CTLDMIN-KDF--TEYP--EHRVEFYKLLKVINEKSFAAF 839 (1023)
T ss_dssp ---CHHHHH-HHHHHHHH-HHHHHHS-SCS--SSSH--HHHHHHHHHHHHHHHHCTHHH
T ss_pred ---hhhhhH-HHHHHHHH-HHHHHHh-ccc--ccCh--HHHHHHHHHHHHHHHHChHHH
Confidence 223333 33333332 1344432 222 2222 233456677777777765544
No 63
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=86.87 E-value=38 Score=36.65 Aligned_cols=335 Identities=12% Similarity=0.048 Sum_probs=167.4
Q ss_pred CChhhHHHHHHHHHHhcccCchhh-hhcccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHh-----hcCCCh
Q 004950 187 RNVEEVEAALTLLYALGESMSEEA-MRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQ-----EHTQYI 260 (722)
Q Consensus 187 ~~W~~~EaaL~~l~~~gE~i~~~~-~~~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~-----~~p~~L 260 (722)
.+....+.|+..++.++..-.... .-...+.++.++..|-.+ +++.++..+...+...+.--. .....+
T Consensus 29 ~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~-----~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i 103 (529)
T 1jdh_A 29 EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT-----NDVETARCTAGTLHNLSHHREGLLAIFKSGGI 103 (529)
T ss_dssp SCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHH
T ss_pred CCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHcCchhHHHHHHcCCH
Confidence 567888999999999986532110 001124566666665432 356788888888887543211 122445
Q ss_pred HHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHh---hccch--HHHHHHHHHhhhhhhhhccCCcccccCCCCchhhH
Q 004950 261 PVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLL---KAKLV--PFIENILQSLQDTIARFTSMNYASKELSGSEDGSH 335 (722)
Q Consensus 261 ~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~---r~~L~--~~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~ 335 (722)
|..+..+ .++++.++..++.++.+++..- +..+. ..++.++..+.+ . ..+-+..
T Consensus 104 ~~L~~lL------~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~----~-----------~~~~~~~ 162 (529)
T 1jdh_A 104 PALVKML------GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK----T-----------NVKFLAI 162 (529)
T ss_dssp HHHHHHT------TCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGC----C-----------CHHHHHH
T ss_pred HHHHHHH------cCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhc----C-----------CHHHHHH
Confidence 5554443 3567889999999999999863 23332 234443333321 0 1111223
Q ss_pred HHHHHHHHHccCCCChhhhHHHHH-HhHHHHHHHHHHHHHhhhccCCchhhhHHHhHHHHHHHHHHhhhccCCCccCCCc
Q 004950 336 IFEAIGLLIGMEDVPPEKQSDYLS-SLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSR 414 (722)
Q Consensus 336 L~Eaig~Lis~~~~~~e~~~~~l~-~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~lakgf~~~~~~~~~ 414 (722)
...+++.+... .++.+....+ ..+.++++-+ ... ++ +. . ......++..++. .+
T Consensus 163 ~~~~L~~la~~---~~~~~~~i~~~~~i~~L~~ll----~~~---~~-~~--~---~~~a~~~L~~l~~--~~------- 217 (529)
T 1jdh_A 163 TTDCLQILAYG---NQESKLIILASGGPQALVNIM----RTY---TY-EK--L---LWTTSRVLKVLSV--CS------- 217 (529)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHTTHHHHHHHHH----HHC---CC-HH--H---HHHHHHHHHHHTT--ST-------
T ss_pred HHHHHHHHHhC---CHHHHHHHHHCCCHHHHHHHH----HhC---Ch-HH--H---HHHHHHHHHHHhc--Cc-------
Confidence 33444544432 3444433333 2344444333 211 11 11 1 2334555555542 11
Q ss_pred chHHHHH--HHHHHHHHHHHhcCCCChhHHhHHHHHHHHHHHhcCcc--cccchHHHHHHHHhcCChhhHHHHHHHHHHH
Q 004950 415 PAIGLMF--KQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGAS--VFPYLPKALEQLLAESEPKEMAGFLVLLNQL 490 (722)
Q Consensus 415 ~~~~~~~--~~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~lg~~--v~p~lp~li~~ll~~~~~~~~~~fL~~~~ql 490 (722)
.....+ ..+++.+...+. ..+..+++.+..++..+....... +...+|.++. ++...+..-....++.++.+
T Consensus 218 -~~~~~~~~~g~~~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~-ll~~~~~~v~~~a~~~L~~L 293 (529)
T 1jdh_A 218 -SNKPAIVEAGGMQALGLHLT--DPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQ-LLGSDDINVVTCAAGILSNL 293 (529)
T ss_dssp -THHHHHHHTTHHHHHHTTTT--SSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHH-HTTCSCHHHHHHHHHHHHHH
T ss_pred -ccHHHHHHCCCHHHHHHHHh--CCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHH-HHcCCCHHHHHHHHHHHHHH
Confidence 111111 246677777665 446888998999998888764322 2345566665 34433443445566777777
Q ss_pred HHHHhhhHHHHHHhhhHHHHHHHHhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCe-----eecCCCCc
Q 004950 491 ICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSS-----VFLSPKSR 565 (722)
Q Consensus 491 i~~f~~~~~~~l~~ll~~l~~~v~~~l~~~~~~~~p~~~~d~~r~~~~l~r~y~~fl~~i~~~~~~~-----vl~s~~~~ 565 (722)
...-.+....+.+. ..+..+..+|... ...+ ++++.-...+..+...++.. .+.. .
T Consensus 294 ~~~~~~~~~~~~~~---~~v~~L~~ll~~~------~~~~-------~v~~~a~~~L~nl~~~~~~~~~~~~~i~~---~ 354 (529)
T 1jdh_A 294 TCNNYKNKMMVCQV---GGIEALVRTVLRA------GDRE-------DITEPAICALRHLTSRHQEAEMAQNAVRL---H 354 (529)
T ss_dssp TTTCHHHHHHHHHT---THHHHHHHHHHHH------TTCH-------HHHHHHHHHHHHHTSSSTTHHHHHHHHHH---T
T ss_pred hcCCHHHHHHHHHc---CChHHHHHHHHcc------CCHH-------HHHHHHHHHHHHHHcCCchHHHHHHHHHH---c
Confidence 54322112222221 1233444555421 1111 25666666666665433220 0110 0
Q ss_pred CChHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 004950 566 GYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLI 599 (722)
Q Consensus 566 ~~l~~~l~~l~~~~~~~~d~~~~k~a~~~l~~li 599 (722)
+ .+..+.....+..++..++.|+..++++.
T Consensus 355 ~----~i~~L~~lL~~~~~~~v~~~a~~~l~nl~ 384 (529)
T 1jdh_A 355 Y----GLPVVVKLLHPPSHWPLIKATVGLIRNLA 384 (529)
T ss_dssp T----CHHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred C----ChhHHHHHhccccchHHHHHHHHHHHHHh
Confidence 1 13334432233334688888888888876
No 64
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=86.21 E-value=31 Score=34.99 Aligned_cols=133 Identities=15% Similarity=0.152 Sum_probs=82.0
Q ss_pred hhHHHHHHHHHHccCCCChhhhHHHHH-HhHHHHHHHHHHHHHhhhccCCchhhhHHHhHHHHHHHHHHhhhccCCCccC
Q 004950 333 GSHIFEAIGLLIGMEDVPPEKQSDYLS-SLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVT 411 (722)
Q Consensus 333 ~l~L~Eaig~Lis~~~~~~e~~~~~l~-~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~lakgf~~~~~~ 411 (722)
+.+-..++|.+++. .++.+...++ ..++||+.-+.. .+ + . .. ....+.+|+++.++.++
T Consensus 99 r~~Aa~~Lg~ia~~---n~~~~~~vv~~g~l~~Ll~LL~~----~~---~-~--~v---~~~A~~ALsnl~~~~~~---- 158 (296)
T 1xqr_A 99 RWRAAQLIGTCSQN---VAAIQEQVLGLGALRKLLRLLDR----DA---C-D--TV---RVKALFAISCLVREQEA---- 158 (296)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHTTHHHHHHHHHHH----CS---C-H--HH---HHHHHHHHHHHHTTCHH----
T ss_pred HHHHHHHHHHHHhC---CHHHHHHHHHCCCHHHHHHHHcc----CC---C-H--HH---HHHHHHHHHHHHcCCcH----
Confidence 55677788888774 4544444444 577777765532 10 1 1 11 24677888888877652
Q ss_pred CCcchHHHHHH--HHHHHHHHHHhcCCCChhHHhHHHHHHHHHHHhcCcc---c--ccchHHHHHHHHhcCChhhHHHHH
Q 004950 412 SSRPAIGLMFK--QTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGAS---V--FPYLPKALEQLLAESEPKEMAGFL 484 (722)
Q Consensus 412 ~~~~~~~~~~~--~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~lg~~---v--~p~lp~li~~ll~~~~~~~~~~fL 484 (722)
..+.|. ..++.+..++. ..+..++..++.++..+...-... + ...+|.++. |+...+..-....+
T Consensus 159 -----~~~~~~~~ggi~~L~~lL~--~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~-LL~~~d~~v~~~al 230 (296)
T 1xqr_A 159 -----GLLQFLRLDGFSVLMRAMQ--QQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVA-LVRTEHSPFHEHVL 230 (296)
T ss_dssp -----HHHHHHHTTHHHHHHHHHH--SSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHH-HHTSCCSTHHHHHH
T ss_pred -----HHHHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHH-HHcCCChhHHHHHH
Confidence 222333 48888888887 468899999999999988762211 1 246677777 45544443334456
Q ss_pred HHHHHHHHH
Q 004950 485 VLLNQLICK 493 (722)
Q Consensus 485 ~~~~qli~~ 493 (722)
+.++.++..
T Consensus 231 ~aL~~l~~~ 239 (296)
T 1xqr_A 231 GALCSLVTD 239 (296)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhC
Confidence 667766654
No 65
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=85.31 E-value=45 Score=36.08 Aligned_cols=95 Identities=12% Similarity=0.148 Sum_probs=59.5
Q ss_pred HHHHHHHHHHh---cCC-CChhHHhHHHHHHHHHHHhc--CcccccchHHHHHHHHhcCC---hh-----hHHHHHHHHH
Q 004950 423 QTLDVLLQILV---VFP-KVEPLRCKVTSFIHRMVDTL--GASVFPYLPKALEQLLAESE---PK-----EMAGFLVLLN 488 (722)
Q Consensus 423 ~~~~vi~~~l~---~~~-~~~~Vre~~~~~~~r~v~~l--g~~v~p~lp~li~~ll~~~~---~~-----~~~~fL~~~~ 488 (722)
+.++++..-.+ .|+ .+.+..++...|+.+...++ |..-..++.=++..++-..+ .. .--++|..+.
T Consensus 215 eLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lA 294 (507)
T 3u0r_A 215 QLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLA 294 (507)
T ss_dssp HHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHhhccchhhccccccchHHHHHHHHHHH
Confidence 44444444332 244 78899999999999999987 44445677777777766542 12 3567888888
Q ss_pred HHHHHHhhhHHHHHHhhhHHHHHHHHhhccC
Q 004950 489 QLICKFNTLVHDILDEVFPAIAGRIFNIIPR 519 (722)
Q Consensus 489 qli~~f~~~~~~~l~~ll~~l~~~v~~~l~~ 519 (722)
+++.--++. +...+.++++.+.+...+..
T Consensus 295 E~s~~~~~~--e~a~~~l~~iy~~L~~ymP~ 323 (507)
T 3u0r_A 295 EMSSFCGDM--EKLETNLRKLFDKLLEYMPL 323 (507)
T ss_dssp HHHTTCCCC--TTHHHHHHHHHHHHHTTSCC
T ss_pred HHccCCCcc--chHHHHHHHHHHHHHHHCCC
Confidence 877655511 12233555566666666664
No 66
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=85.11 E-value=22 Score=40.19 Aligned_cols=249 Identities=12% Similarity=0.096 Sum_probs=126.7
Q ss_pred CChhhHHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhh------cCCCh
Q 004950 187 RNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQE------HTQYI 260 (722)
Q Consensus 187 ~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~------~p~~L 260 (722)
.+....+.|+..|+.++..-.....-.....++.++..+ ..+++.|+..+.+++...+..-.. ....+
T Consensus 69 ~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL------~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i 142 (644)
T 2z6h_A 69 NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKML------GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGL 142 (644)
T ss_dssp CCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHT------TCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHH
T ss_pred CCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHH------hCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCCh
Confidence 356677888888888876521100000123455444442 235689999999999988765321 23445
Q ss_pred HHHHHHhccccCCCCCCchhHHHHHHHHHHHHH---HhhccchH--HHHHHHHHhhhhhhhhccCCcccccCCCCchhhH
Q 004950 261 PVVLAAFLDERGIHHPNVHVSRRASYLFMRVVK---LLKAKLVP--FIENILQSLQDTIARFTSMNYASKELSGSEDGSH 335 (722)
Q Consensus 261 ~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k---~~r~~L~~--~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~ 335 (722)
|..+..+ .+++.+++..++.++..++. ..|..+.. -++.++..+++ . ..+ . -
T Consensus 143 ~~Lv~lL------~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~----~-----------~~~-~-~ 199 (644)
T 2z6h_A 143 QKMVALL------NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT----Y-----------TYE-K-L 199 (644)
T ss_dssp HHHHHGG------GCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTT----C-----------CCH-H-H
T ss_pred HHHHHHH------CcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHc----C-----------ChH-H-H
Confidence 5555444 34567888888888988884 34444432 34444443321 0 011 1 1
Q ss_pred HHHHHHHHHccCCCChhhhHHHHH-HhHHHHHHHHHHHHHhhhccCCchhhhHHHhHHHHHHHHHHhhhccCCCccCCCc
Q 004950 336 IFEAIGLLIGMEDVPPEKQSDYLS-SLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSR 414 (722)
Q Consensus 336 L~Eaig~Lis~~~~~~e~~~~~l~-~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~lakgf~~~~~~~~~ 414 (722)
...+++.|.... ..++.+...++ ..+.+++.-+ . . ++ . .. ....+.++++++++.+..
T Consensus 200 ~~~a~~~L~nLs-~~~~~~~~l~~~g~l~~L~~ll----~---~-~~-~--~~---~~~a~~~L~nL~~~~~~~------ 258 (644)
T 2z6h_A 200 LWTTSRVLKVLS-VCSSNKPAIVEAGGMQALGLHL----T---D-PS-Q--RL---VQNCLWTLRNLSDAATKQ------ 258 (644)
T ss_dssp HHHHHHHHHHHT-TCTTHHHHHHHTTHHHHHHTTT----T---C-SC-H--HH---HHHHHHHHHHHGGGCTTC------
T ss_pred HHHHHHHHHHHh-cCcccHHHHHHCCCHHHHHHHH----h---c-CC-H--HH---HHHHHHHHHHHhhcchhh------
Confidence 223333333322 23334433333 2333333222 1 1 11 1 11 345667777777654321
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCChhHHhHHHHHHHHHHHhcCc---cc--ccchHHHHHHHHhcCC-hhhHHHHHHHHH
Q 004950 415 PAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGA---SV--FPYLPKALEQLLAESE-PKEMAGFLVLLN 488 (722)
Q Consensus 415 ~~~~~~~~~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~lg~---~v--~p~lp~li~~ll~~~~-~~~~~~fL~~~~ 488 (722)
.....+.+.+...+. ..+..+++.++.++..+...-.. .+ ...+|.++..+....+ ..-....++.++
T Consensus 259 ----~~~~~~i~~Lv~lL~--~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~ 332 (644)
T 2z6h_A 259 ----EGMEGLLGTLVQLLG--SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALR 332 (644)
T ss_dssp ----CSCHHHHHHHHHHTT--CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----hhhhhHHHHHHHHHc--CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHH
Confidence 112356777777776 57789999999998877542100 01 1245666664443222 122233445555
Q ss_pred HHH
Q 004950 489 QLI 491 (722)
Q Consensus 489 qli 491 (722)
.++
T Consensus 333 nL~ 335 (644)
T 2z6h_A 333 HLT 335 (644)
T ss_dssp HHT
T ss_pred HHh
Confidence 554
No 67
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=83.81 E-value=18 Score=35.65 Aligned_cols=84 Identities=11% Similarity=0.027 Sum_probs=58.9
Q ss_pred CChhhHHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhhcCCChHHHHHH
Q 004950 187 RNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAA 266 (722)
Q Consensus 187 ~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~~p~~L~~vL~~ 266 (722)
.+|.....++.+|+.+|+..+. .-+..++.|.. ...+++|.||..+.+.+++... ++.++.++..
T Consensus 103 ~~~~vr~~a~~aL~~l~~~~~~--------~~~~~~~~L~~--~l~d~~~~vR~~a~~aL~~~~~-----~~~~~~L~~~ 167 (280)
T 1oyz_A 103 KSACVRATAIESTAQRCKKNPI--------YSPKIVEQSQI--TAFDKSTNVRRATAFAISVIND-----KATIPLLINL 167 (280)
T ss_dssp SCHHHHHHHHHHHHHHHHHCGG--------GHHHHHHHHHH--HTTCSCHHHHHHHHHHHHTC--------CCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhccCCc--------ccHHHHHHHHH--HhhCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHH
Confidence 6788899999999998865431 12234444443 2345788999999999998764 6677766655
Q ss_pred hccccCCCCCCchhHHHHHHHHHHH
Q 004950 267 FLDERGIHHPNVHVSRRASYLFMRV 291 (722)
Q Consensus 267 ~l~~~Gl~~~~~~V~~ra~ylf~r~ 291 (722)
+ .++++.||..++.++.++
T Consensus 168 l------~d~~~~vr~~a~~aL~~~ 186 (280)
T 1oyz_A 168 L------KDPNGDVRNWAAFAININ 186 (280)
T ss_dssp H------TCSSHHHHHHHHHHHHHH
T ss_pred H------cCCCHHHHHHHHHHHHhh
Confidence 4 357888999999988776
No 68
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=83.25 E-value=26 Score=41.75 Aligned_cols=215 Identities=13% Similarity=0.160 Sum_probs=132.3
Q ss_pred hhhHHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhhc-CCChHHHHHHh
Q 004950 189 VEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEH-TQYIPVVLAAF 267 (722)
Q Consensus 189 W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~~-p~~L~~vL~~~ 267 (722)
=...+||-..+-++...++++.. ...+|.++..|-. . .....+..++.++++..+=.... -..+|.+++.+
T Consensus 109 ~~v~~aa~~~~~~~~~~~~~~a~---~~~~~~~~~~~~~---~--~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~ 180 (986)
T 2iw3_A 109 KEIQSVASETLISIVNAVNPVAI---KALLPHLTNAIVE---T--NKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVL 180 (986)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGGH---HHHHHHHHHHHHH---C--CCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHH---HHHHHHHHHHhcc---c--cchHHHHHHHHHHHHHHHHhHHHHHHhccchhcch
Confidence 45679999999999999998754 3567777777643 2 24678889999999988743211 23477777777
Q ss_pred ccccCCCCCCchhHHHHHHHHHHHHHHhh-ccchHHHHHHHHHhhhhhhhhccCCcccccCCCCchhhHHHHHHHHHHcc
Q 004950 268 LDERGIHHPNVHVSRRASYLFMRVVKLLK-AKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGM 346 (722)
Q Consensus 268 l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r-~~L~~~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~L~Eaig~Lis~ 346 (722)
. .++++-.+.|+.+|-..+..+|..+. ..+.|+++.+++.+.+ ++ .+=|+|-.|.+.
T Consensus 181 ~--~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~-----------------p~---~~~~~~~~l~~~ 238 (986)
T 2iw3_A 181 S--ETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIAD-----------------PT---EVPETVHLLGAT 238 (986)
T ss_dssp H--HHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHC-----------------TT---HHHHHHHHHTTC
T ss_pred H--hhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcC-----------------hh---hhHHHHHHhhcC
Confidence 7 68888889999999878888887654 6778999999988854 22 245777777664
Q ss_pred CCCChhhhHHHHHHhHHHHHHHHHHHHHhhhccCCchhhhHHHhHHHHHHHHHHhhhccCCCccCCCcchHHHHHHHHHH
Q 004950 347 EDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLD 426 (722)
Q Consensus 347 ~~~~~e~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~lakgf~~~~~~~~~~~~~~~~~~~~~ 426 (722)
.=+.. -- .---+++.|++.+= +... . +.+. -+....+++++|-..+.. .....+-..+|
T Consensus 239 tfv~~-v~-~~~l~~~~p~l~r~---l~~~----~----~~~~--r~~~~~~~n~~~lv~~~~------~~~~f~~~l~p 297 (986)
T 2iw3_A 239 TFVAE-VT-PATLSIMVPLLSRG---LNER----E----TGIK--RKSAVIIDNMCKLVEDPQ------VIAPFLGKLLP 297 (986)
T ss_dssp CCCSC-CC-HHHHHHHHHHHHHH---HTSS----S----HHHH--HHHHHHHHHHHTTCCCHH------HHHHHHTTTHH
T ss_pred eeEee-ec-chhHHHHHHHHHhh---hccC----c----chhh--eeeEEEEcchhhhcCCHH------HHhhhhhhhhh
Confidence 32211 11 22235667766542 2110 0 1111 234445677777666421 12222333455
Q ss_pred HHHHHHhcCCCChhHHhHHHHHHHHHHHh
Q 004950 427 VLLQILVVFPKVEPLRCKVTSFIHRMVDT 455 (722)
Q Consensus 427 vi~~~l~~~~~~~~Vre~~~~~~~r~v~~ 455 (722)
-+..+.+. ..++++||-+.+++.-+...
T Consensus 298 ~~~~~~~~-~~~pe~r~~~~~a~~~l~~~ 325 (986)
T 2iw3_A 298 GLKSNFAT-IADPEAREVTLRALKTLRRV 325 (986)
T ss_dssp HHHHHTTT-CCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhc-cCCHHHHHHHHHHHHHHHHh
Confidence 55555443 44566666665555555444
No 69
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=83.01 E-value=1.9 Score=37.88 Aligned_cols=86 Identities=12% Similarity=0.052 Sum_probs=56.6
Q ss_pred HHHHHHhcCCCCCChhhHHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHh
Q 004950 175 NSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQ 254 (722)
Q Consensus 175 ~~l~~~l~~~~~~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~ 254 (722)
+.+...+.. .+|.....|+..|+.+|+. ..++.++..+- +++|.||..+.+.+++..
T Consensus 45 ~~L~~~L~d---~~~~vR~~A~~aL~~~~~~----------~a~~~L~~~L~------d~~~~VR~~A~~aL~~~~---- 101 (131)
T 1te4_A 45 EPLLESLSN---EDWRIRGAAAWIIGNFQDE----------RAVEPLIKLLE------DDSGFVRSGAARSLEQIG---- 101 (131)
T ss_dssp HHHHHGGGC---SCHHHHHHHHHHHGGGCSH----------HHHHHHHHHHH------HCCTHHHHHHHHHHHHHC----
T ss_pred HHHHHHHcC---CCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHc------CCCHHHHHHHHHHHHHhC----
Confidence 334445543 6798889999988777641 23555555543 356789999999999875
Q ss_pred hcCCChHHHHHHhccccCCCCCCchhHHHHHHHHHH
Q 004950 255 EHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMR 290 (722)
Q Consensus 255 ~~p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r 290 (722)
.++ +++.+. ..+.++++.||..|+.++.+
T Consensus 102 -~~~----a~~~L~--~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 102 -GER----VRAAME--KLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp -SHH----HHHHHH--HHTTSCCTHHHHHHHHHGGG
T ss_pred -cHH----HHHHHH--HHHhCCCHHHHHHHHHHHHh
Confidence 233 344444 23346788899999877653
No 70
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=82.52 E-value=4.3 Score=40.48 Aligned_cols=88 Identities=9% Similarity=-0.034 Sum_probs=61.5
Q ss_pred CChhhHHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhhcCCChHHHHHH
Q 004950 187 RNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAA 266 (722)
Q Consensus 187 ~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~~p~~L~~vL~~ 266 (722)
.+|.....|+..|+.+|. + ..++.++..+ ..+++.||..+.+.+++.. ..++.++.+++.
T Consensus 35 ~~~~vr~~A~~~L~~~~~---~-------~~~~~L~~~l------~d~~~~vR~~A~~aL~~l~----~~~~~~~~l~~~ 94 (280)
T 1oyz_A 35 HNSLKRISSARVLQLRGG---Q-------DAVRLAIEFC------SDKNYIRRDIGAFILGQIK----ICKKCEDNVFNI 94 (280)
T ss_dssp SSHHHHHHHHHHHHHHCC---H-------HHHHHHHHHH------TCSSHHHHHHHHHHHHHSC----CCTTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCC---c-------hHHHHHHHHH------cCCCHHHHHHHHHHHHHhc----cccccchHHHHH
Confidence 578888889999988873 1 2344454443 2367889999999998764 235566766665
Q ss_pred hccccCCCCCCchhHHHHHHHHHHHHHHh
Q 004950 267 FLDERGIHHPNVHVSRRASYLFMRVVKLL 295 (722)
Q Consensus 267 ~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~ 295 (722)
+.+ ..+.++++.||..++.++.++++..
T Consensus 95 L~~-~~~~d~~~~vr~~a~~aL~~l~~~~ 122 (280)
T 1oyz_A 95 LNN-MALNDKSACVRATAIESTAQRCKKN 122 (280)
T ss_dssp HHH-HHHHCSCHHHHHHHHHHHHHHHHHC
T ss_pred HHH-HHhcCCCHHHHHHHHHHHHHHhccC
Confidence 531 2334678899999999999988643
No 71
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=81.61 E-value=4 Score=38.37 Aligned_cols=78 Identities=12% Similarity=0.111 Sum_probs=56.1
Q ss_pred CChhhHHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhhcCCChHHHHHH
Q 004950 187 RNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAA 266 (722)
Q Consensus 187 ~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~~p~~L~~vL~~ 266 (722)
.+|.....|+..|..+++. ..++.++..+ ..++|.||..+.+.++++. .++.++.++..
T Consensus 88 ~~~~vr~~a~~aL~~~~~~----------~~~~~L~~~l------~d~~~~vr~~a~~aL~~~~-----~~~~~~~L~~~ 146 (201)
T 3ltj_A 88 EDGWVRQSAAVALGQIGDE----------RAVEPLIKAL------KDEDWFVRIAAAFALGEIG-----DERAVEPLIKA 146 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCG----------GGHHHHHHHT------TCSSHHHHHHHHHHHHHHT-----CGGGHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcH----------HHHHHHHHHH------cCCCHHHHHHHHHHHHHhC-----CHHHHHHHHHH
Confidence 6788888899998887652 2344444432 3467899999999999874 45666655544
Q ss_pred hccccCCCCCCchhHHHHHHHHHHH
Q 004950 267 FLDERGIHHPNVHVSRRASYLFMRV 291 (722)
Q Consensus 267 ~l~~~Gl~~~~~~V~~ra~ylf~r~ 291 (722)
+ .++++.||..++.++.++
T Consensus 147 l------~d~~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 147 L------KDEDGWVRQSAADALGEI 165 (201)
T ss_dssp T------TCSSHHHHHHHHHHHHHH
T ss_pred H------cCCCHHHHHHHHHHHHHh
Confidence 3 357888999999888887
No 72
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=81.40 E-value=5.7 Score=47.40 Aligned_cols=154 Identities=19% Similarity=0.289 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHH-cChhhHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhC
Q 004950 150 YRKDLLVLLRSVGR-VAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQT 228 (722)
Q Consensus 150 ~Rk~l~~ll~~i~~-l~~~l~l~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~ 228 (722)
.|+--....++++. +.|..+ ..+.+.+.+.+.. ...||.-.+||-++..+++..+.- -...+|++++.+...
T Consensus 111 v~~aa~~~~~~~~~~~~~~a~-~~~~~~~~~~~~~--~~kw~~k~~~l~~~~~~~~~~~~~----~~~~~~~~~p~~~~~ 183 (986)
T 2iw3_A 111 IQSVASETLISIVNAVNPVAI-KALLPHLTNAIVE--TNKWQEKIAILAAFSAMVDAAKDQ----VALRMPELIPVLSET 183 (986)
T ss_dssp HHHHHHHHHHHHHHHSCGGGH-HHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHSHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHhcc--ccchHHHHHHHHHHHHHHHHhHHH----HHHhccchhcchHhh
Confidence 67767777777666 566655 5555555555543 247999999999999999987532 135688999988763
Q ss_pred CCCCCChhHHHHHHHHHHHhhHHHHhh---------------cCCChHHHH---------------------HHhccccC
Q 004950 229 KLPCHSNRLVALVYLETVTRYMKFIQE---------------HTQYIPVVL---------------------AAFLDERG 272 (722)
Q Consensus 229 ~i~~~~hp~V~~~~~e~i~RY~~~~~~---------------~p~~L~~vL---------------------~~~l~~~G 272 (722)
--+.+|.|.-++..++...+.-+.+ +|+-+|..+ +.+. ||
T Consensus 184 --~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p~~~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~--r~ 259 (986)
T 2iw3_A 184 --MWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADPTEVPETVHLLGATTFVAEVTPATLSIMVPLLS--RG 259 (986)
T ss_dssp --TTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCTTHHHHHHHHHTTCCCCSCCCHHHHHHHHHHHH--HH
T ss_pred --cccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcChhhhHHHHHHhhcCeeEeeecchhHHHHHHHHH--hh
Confidence 4457889999999999988886652 566555442 2233 89
Q ss_pred CCCCCchhHHHHHHHHHHHHHHhh--ccchHHHHHHHHHhhhhh
Q 004950 273 IHHPNVHVSRRASYLFMRVVKLLK--AKLVPFIENILQSLQDTI 314 (722)
Q Consensus 273 l~~~~~~V~~ra~ylf~r~~k~~r--~~L~~~~~~il~~l~~ll 314 (722)
+..+...++..++-..-++||... ....||++.++-.++...
T Consensus 260 l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~ 303 (986)
T 2iw3_A 260 LNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNF 303 (986)
T ss_dssp HTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHT
T ss_pred hccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHh
Confidence 988888899999999999999765 333577777777776544
No 73
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=80.86 E-value=24 Score=41.14 Aligned_cols=248 Identities=12% Similarity=0.075 Sum_probs=124.8
Q ss_pred CChhhHHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhh------cCCCh
Q 004950 187 RNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQE------HTQYI 260 (722)
Q Consensus 187 ~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~------~p~~L 260 (722)
.++...+.|+.+|+.++..-.....-.....++.++..| ..+++.|+..+++++...+..-.. ....+
T Consensus 205 ~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL------~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v 278 (780)
T 2z6g_A 205 NDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNML------GSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGL 278 (780)
T ss_dssp CCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHT------TCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHH
T ss_pred CCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHH------cCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCH
Confidence 367788899999988876411100000123444444432 335689999999999988876332 23334
Q ss_pred HHHHHHhccccCCCCCCchhHHHHHHHHHHHHH---HhhccchH--HHHHHHHHhhhhhhhhccCCcccccCCCCchh-h
Q 004950 261 PVVLAAFLDERGIHHPNVHVSRRASYLFMRVVK---LLKAKLVP--FIENILQSLQDTIARFTSMNYASKELSGSEDG-S 334 (722)
Q Consensus 261 ~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k---~~r~~L~~--~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~-l 334 (722)
+..+..+ .+++.+++..++.++..++. +.|..+.. -++.++..+++ . ..+.. .
T Consensus 279 ~~Lv~lL------~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~----~-----------~~~~~~~ 337 (780)
T 2z6g_A 279 QKMVALL------NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT----Y-----------TYEKLLW 337 (780)
T ss_dssp HHHHHGG------GCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTT----C-----------CCHHHHH
T ss_pred HHHHHHH------hcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhc----C-----------CHHHHHH
Confidence 4444333 34677888888888888873 34443322 34444443321 1 11111 1
Q ss_pred HHHHHHHHHHccCCCChhhhHHHHH-HhHHHHHHHHHHHHHhhhccCCchhhhHHHhHHHHHHHHHHhhhccCCCccCCC
Q 004950 335 HIFEAIGLLIGMEDVPPEKQSDYLS-SLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSS 413 (722)
Q Consensus 335 ~L~Eaig~Lis~~~~~~e~~~~~l~-~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~lakgf~~~~~~~~ 413 (722)
....++..|.. .++.+...++ ..+.+++.-+ . . .+. .. ....+.+++.++++.....
T Consensus 338 ~a~~aL~~Ls~----~~~~~~~i~~~g~l~~Ll~lL----~---~-~~~---~~---~~~a~~~L~~L~~~~~~~~---- 395 (780)
T 2z6g_A 338 TTSRVLKVLSV----CSSNKPAIVEAGGMQALGLHL----T---D-PSQ---RL---VQNCLWTLRNLSDAATKQE---- 395 (780)
T ss_dssp HHHHHHHHHHT----STTHHHHHHHTTHHHHHGGGT----T---C-SCH---HH---HHHHHHHHHHHHTTCTTCS----
T ss_pred HHHHHHHHhhc----ChHHHHHHHHhchHHHHHHHH----c---C-Cch---HH---HHHHHHHHHHHhccchhhh----
Confidence 22333333332 2223333322 2233332222 1 1 111 11 2445667777776543211
Q ss_pred cchHHHHHHHHHHHHHHHHhcCCCChhHHhHHHHHHHHHHHhcCcc---c--ccchHHHHHHHHhcCCh-hhHHHHHHHH
Q 004950 414 RPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGAS---V--FPYLPKALEQLLAESEP-KEMAGFLVLL 487 (722)
Q Consensus 414 ~~~~~~~~~~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~lg~~---v--~p~lp~li~~ll~~~~~-~~~~~fL~~~ 487 (722)
....+++.+...+. ..+..+|+.++.++..+...-... + ...+|.++..|....+. .-....++.+
T Consensus 396 ------~~~~~i~~Lv~lL~--~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL 467 (780)
T 2z6g_A 396 ------GMEGLLGTLVQLLG--SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 467 (780)
T ss_dssp ------CCHHHHHHHHHHTT--CSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ------hhhhHHHHHHHHHc--CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 12356677777776 577899999999998875431110 0 23467777755442222 1222334455
Q ss_pred HHHH
Q 004950 488 NQLI 491 (722)
Q Consensus 488 ~qli 491 (722)
+.+.
T Consensus 468 ~nL~ 471 (780)
T 2z6g_A 468 RHLT 471 (780)
T ss_dssp HHTT
T ss_pred HHHH
Confidence 5443
No 74
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=80.02 E-value=7.8 Score=38.81 Aligned_cols=121 Identities=12% Similarity=0.161 Sum_probs=82.3
Q ss_pred CChhhHHHHHHHHHHhcccCchhhhh--cccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhhcCCChHHHH
Q 004950 187 RNVEEVEAALTLLYALGESMSEEAMR--TGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVL 264 (722)
Q Consensus 187 ~~W~~~EaaL~~l~~~gE~i~~~~~~--~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~~p~~L~~vL 264 (722)
.+-+..+.++-++..+.+........ ......+.+++.|+...+ ..+.+.++-..++++..+.+- ......++
T Consensus 67 sN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l-~~~k~~~~~~a~~~l~~~~~~----~~~~~~~~ 141 (278)
T 4ffb_C 67 SNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGL-TSSRATTKTQSMSCILSLCGL----DTSITQSV 141 (278)
T ss_dssp SSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTS-SCCCHHHHHHHHHHHHHHHHT----SSSSHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHh-cCccHHHHHHHHHHHHHHHHh----cCcHHHHH
Confidence 56788899999999998876543210 112345566777765423 235678988888888766532 33456778
Q ss_pred HHhccccCCCCCCchhHHHHHHHHHHHHHHhhccc---hHHHHHHHHHhhhhh
Q 004950 265 AAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKL---VPFIENILQSLQDTI 314 (722)
Q Consensus 265 ~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L---~~~~~~il~~l~~ll 314 (722)
+.++ .|+.|.|++|+..+...+.++++...... .+.++.++..+..++
T Consensus 142 e~l~--~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l 192 (278)
T 4ffb_C 142 ELVI--PFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLA 192 (278)
T ss_dssp HHHG--GGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHH
T ss_pred HHHH--HHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHH
Confidence 8888 78999999999999999999998755433 335666666665555
No 75
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=76.55 E-value=4.6 Score=38.28 Aligned_cols=81 Identities=9% Similarity=-0.045 Sum_probs=40.0
Q ss_pred CChhhHHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhhcCCChHHHHHH
Q 004950 187 RNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAA 266 (722)
Q Consensus 187 ~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~~p~~L~~vL~~ 266 (722)
.+|.....++..|+.+|+. ..++.+... ..+++|.||..+.+.++++.. ++.++.+...
T Consensus 124 ~~~~vr~~a~~aL~~~~~~----------~~~~~L~~~------l~d~~~~vr~~a~~aL~~~~~-----~~~~~~L~~~ 182 (211)
T 3ltm_A 124 EDWFVRIAAAFALGEIGDE----------RAVEPLIKA------LKDEDGWVRQSAADALGEIGG-----ERVRAAMEKL 182 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCG----------GGHHHHHHH------TTCSSHHHHHHHHHHHHHHCS-----HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCH----------HHHHHHHHH------HcCCCHHHHHHHHHHHHHhCc-----hhHHHHHHHH
Confidence 5566666666666666532 123333332 123456677777777776632 3333322222
Q ss_pred hccccCCCCCCchhHHHHHHHHHHHHHH
Q 004950 267 FLDERGIHHPNVHVSRRASYLFMRVVKL 294 (722)
Q Consensus 267 ~l~~~Gl~~~~~~V~~ra~ylf~r~~k~ 294 (722)
+.++++.||.+|..++.++...
T Consensus 183 ------l~d~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 183 ------AETGTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp ------HHHCCHHHHHHHHHHHHC----
T ss_pred ------HhCCCHHHHHHHHHHHHhcCCC
Confidence 2245666777776666655543
No 76
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=76.15 E-value=22 Score=32.96 Aligned_cols=79 Identities=13% Similarity=0.110 Sum_probs=57.7
Q ss_pred CChhhHHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhhcCCChHHHHHH
Q 004950 187 RNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAA 266 (722)
Q Consensus 187 ~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~~p~~L~~vL~~ 266 (722)
.+|.....|+..|..+++. ..++.++..+ ..+++.||..+.+.++++. .++.++.++..
T Consensus 26 ~~~~vr~~A~~~L~~~~~~----------~~~~~L~~~l------~~~~~~vr~~a~~~L~~~~-----~~~~~~~L~~~ 84 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDE----------RAVEPLIKAL------KDEDAWVRRAAADALGQIG-----DERAVEPLIKA 84 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCG----------GGHHHHHHHT------TCSSHHHHHHHHHHHHHHC-----CGGGHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCh----------hHHHHHHHHH------cCCCHHHHHHHHHHHHhhC-----CHHHHHHHHHH
Confidence 7899999999999888752 2355555543 3467899999999999863 45666665554
Q ss_pred hccccCCCCCCchhHHHHHHHHHHHH
Q 004950 267 FLDERGIHHPNVHVSRRASYLFMRVV 292 (722)
Q Consensus 267 ~l~~~Gl~~~~~~V~~ra~ylf~r~~ 292 (722)
+ .++++.||..|+.++.++.
T Consensus 85 l------~d~~~~vr~~a~~aL~~~~ 104 (201)
T 3ltj_A 85 L------KDEDGWVRQSAAVALGQIG 104 (201)
T ss_dssp T------TCSSHHHHHHHHHHHHHHC
T ss_pred H------cCCCHHHHHHHHHHHHHhC
Confidence 3 4678899999988887753
No 77
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=71.26 E-value=72 Score=37.12 Aligned_cols=53 Identities=11% Similarity=0.179 Sum_probs=38.8
Q ss_pred CChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHH---HhhccchH-HHHHHHHHhhh
Q 004950 258 QYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVK---LLKAKLVP-FIENILQSLQD 312 (722)
Q Consensus 258 ~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k---~~r~~L~~-~~~~il~~l~~ 312 (722)
+++.-+++..+ .|+.+.+..++..+..+++.++- .|+..+.| -++.+..+++.
T Consensus 335 ~fV~~l~p~~~--~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~ 391 (799)
T 1vsy_4 335 EIVEIFLNIIS--LGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLAD 391 (799)
T ss_dssp HHHHHHHHHHH--HHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHH--HHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhcc
Confidence 44566667777 89999999999999999999998 55566655 45555555544
No 78
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=69.85 E-value=9.9 Score=39.84 Aligned_cols=91 Identities=12% Similarity=0.105 Sum_probs=67.9
Q ss_pred CCChhHHHHHHHHHHHhhHHHHhhcCCChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhhccchHHHHHHHHHhh
Q 004950 232 CHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQ 311 (722)
Q Consensus 232 ~~~hp~V~~~~~e~i~RY~~~~~~~p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L~~~~~~il~~l~ 311 (722)
++++|.+|-.++=++++. ..|+.++++...+- +++.|+++.||+.|+....++++.... .++.+++.++
T Consensus 114 ~~~N~~iR~lALRtL~~I-----~~~~m~~~l~~~lk--~~L~d~~pyVRk~A~l~~~kL~~~~pe----~v~~~~~~l~ 182 (355)
T 3tjz_B 114 TGKEDSYRGPAVRALCQI-----TDSTMLQAIERYMK--QAIVDKVPSVSSSALVSSLHLLKCSFD----VVKRWVNEAQ 182 (355)
T ss_dssp HSSCHHHHHHHHHHHHHH-----CCTTTHHHHHHHHH--HHHTCSSHHHHHHHHHHHHHHTTTCHH----HHHTTHHHHH
T ss_pred CCCcHhHHHHHHHHHhcC-----CCHHHHHHHHHHHH--HHcCCCCHHHHHHHHHHHHHHhccCHH----HHHHHHHHHH
Confidence 347789999999999987 56899999999998 899999999999999888877764433 2344555555
Q ss_pred hhhhhhccCCcccccCCCCchhhHHHHHHHHHHccC
Q 004950 312 DTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGME 347 (722)
Q Consensus 312 ~ll~~~~~~~~~~~~~~~~~d~l~L~Eaig~Lis~~ 347 (722)
+++. ..+..-+|-|++.+-...
T Consensus 183 ~ll~--------------d~n~~V~~~Al~lL~ei~ 204 (355)
T 3tjz_B 183 EAAS--------------SDNIMVQYHALGLLYHVR 204 (355)
T ss_dssp HHTT--------------CSSHHHHHHHHHHHHHHH
T ss_pred HHhc--------------CCCccHHHHHHHHHHHHH
Confidence 5542 223456678888777763
No 79
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=60.23 E-value=1.2e+02 Score=30.15 Aligned_cols=137 Identities=11% Similarity=0.149 Sum_probs=81.1
Q ss_pred CccchhhHHHHHHHHHHHhccCC-CChHHHHHHHHHHHHHHHHHcccCcccccCCccCCCCChhHHHHHHHHHHHHHHHH
Q 004950 80 EVDTTFSIVQFLSGYVATMKSLS-PLKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLL 158 (722)
Q Consensus 80 d~~~~~~~~~F~~~~l~~lk~~~-~l~~~~~~~l~~Ll~~li~km~yp~~~~~~~d~~~~~~~ede~~F~e~Rk~l~~ll 158 (722)
...+...+++++..+++.+.+.. .+.+.. ...+++.++.|+= |. . | .+|..++.++
T Consensus 100 N~~v~~~~L~~L~~l~~~l~~~~y~~~~~e---a~~~lP~LveKlG---d~-----------k-~-----~vR~~~r~il 156 (266)
T 2of3_A 100 NPAALIKVLELCKVIVELIRDTETPMSQEE---VSAFVPYLLLKTG---EA-----------K-D-----NMRTSVRDIV 156 (266)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCCCCHHH---HHHHHHHHHHGGG---CS-----------S-H-----HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhccccchHHH---HHHHHHHHHHHhC---CC-----------h-H-----HHHHHHHHHH
Confidence 45566788888888888875432 233332 2356677777771 10 1 1 3788888888
Q ss_pred HHHHHcC-hhhHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhCCCCCCChhH
Q 004950 159 RSVGRVA-PEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRL 237 (722)
Q Consensus 159 ~~i~~l~-~~l~l~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~~i~~~~hp~ 237 (722)
+.+..+. |+.+..+ +.+.+.+ -+|+..|.+|.++..+=+..... ....+ .+-+.+.. ...++.+.
T Consensus 157 ~~l~~v~~~~~v~~~----l~~g~ks---KN~R~R~e~l~~l~~li~~~G~~----~~~~l-~~~~~ia~--ll~D~d~~ 222 (266)
T 2of3_A 157 NVLSDVVGPLKMTPM----LLDALKS---KNARQRSECLLVIEYYITNAGIS----PLKSL-SVEKTVAP--FVGDKDVN 222 (266)
T ss_dssp HHHHHHHCHHHHHHH----HHHGGGC---SCHHHHHHHHHHHHHHHHHHCSG----GGGGG-CHHHHHGG--GGGCSSHH
T ss_pred HHHHHHCCHHHHHHH----HHHHHcc---CCHHHHHHHHHHHHHHHHhcCCC----ccccc-cchHHHHH--HHcCCCHH
Confidence 8777664 5544433 3333333 67999999999998775532211 11223 00033332 12335678
Q ss_pred HHHHHHHHHHhhHHHH
Q 004950 238 VALVYLETVTRYMKFI 253 (722)
Q Consensus 238 V~~~~~e~i~RY~~~~ 253 (722)
||-+++-+++--+...
T Consensus 223 VR~aAl~~lve~y~~~ 238 (266)
T 2of3_A 223 VRNAAINVLVACFKFE 238 (266)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999665554
No 80
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=59.16 E-value=88 Score=29.49 Aligned_cols=122 Identities=15% Similarity=0.254 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHHcChhhHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhCC
Q 004950 150 YRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTK 229 (722)
Q Consensus 150 ~Rk~l~~ll~~i~~l~~~l~l~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~~ 229 (722)
.|-.++-.+.-|++.+|.+.-.++..... .++ +.+=.+-=+||--+.++||+=.. .-..++|.++..|
T Consensus 123 ikIn~~yaLeeIaranP~l~~~v~rdi~s-mlt---skd~~Dkl~aLnFi~alGen~~~----yv~PfLprL~aLL---- 190 (253)
T 2db0_A 123 TKINVSYALEEIAKANPMLMASIVRDFMS-MLS---SKNREDKLTALNFIEAMGENSFK----YVNPFLPRIINLL---- 190 (253)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHH-HTS---CSSHHHHHHHHHHHHTCCTTTHH----HHGGGHHHHHGGG----
T ss_pred ceecHHHHHHHHHHhChHHHHHHHHHHHH-Hhc---CCChHHHHHHHHHHHHHhccCcc----ccCcchHHHHHHH----
Confidence 68889999999999999987776666555 333 35677778999999999997432 1235666666554
Q ss_pred CCCCChhHHHHHHHHHHHhhHHHHhhcCCChHHHHHHhccccCCCCCCchhHHHHHHHHHHH
Q 004950 230 LPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRV 291 (722)
Q Consensus 230 i~~~~hp~V~~~~~e~i~RY~~~~~~~p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~ 291 (722)
.+.+..||-.+.|+++..+. .+|. +.++.--.+ .-+.+++.-|.-..--.+.|+
T Consensus 191 --~D~deiVRaSaVEtL~~lA~---~npk-lRkii~~kl--~e~~D~S~lv~~~V~egL~rl 244 (253)
T 2db0_A 191 --HDGDEIVRASAVEALVHLAT---LNDK-LRKVVIKRL--EELNDTSSLVNKTVKEGISRL 244 (253)
T ss_dssp --GCSSHHHHHHHHHHHHHHHT---SCHH-HHHHHHHHH--HHCCCSCHHHHHHHHHHHHHH
T ss_pred --cCcchhhhHHHHHHHHHHHH---cCHH-HHHHHHHHH--HHhcCcHHHHHHHHHHHHHHH
Confidence 33567899999999997654 4666 666666666 456666666655554455554
No 81
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=49.97 E-value=8.5 Score=33.49 Aligned_cols=78 Identities=9% Similarity=0.055 Sum_probs=50.3
Q ss_pred CChhhHHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhhcCCChHHHHHH
Q 004950 187 RNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAA 266 (722)
Q Consensus 187 ~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~~p~~L~~vL~~ 266 (722)
.+|.....|+..|..+|+. .++.++.. ..+++|.||..+.+.+++... ++.++.++..
T Consensus 24 ~~~~vR~~A~~~L~~~~~~-----------~~~~L~~~------L~d~~~~vR~~A~~aL~~~~~-----~~a~~~L~~~ 81 (131)
T 1te4_A 24 ENKWVRRDVSTALSRMGDE-----------AFEPLLES------LSNEDWRIRGAAAWIIGNFQD-----ERAVEPLIKL 81 (131)
T ss_dssp SCCCSSSSCCSSTTSCSST-----------THHHHHHG------GGCSCHHHHHHHHHHHGGGCS-----HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCch-----------HHHHHHHH------HcCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHH
Confidence 4566666666666544432 13333332 234778999999999998753 3344444443
Q ss_pred hccccCCCCCCchhHHHHHHHHHHHH
Q 004950 267 FLDERGIHHPNVHVSRRASYLFMRVV 292 (722)
Q Consensus 267 ~l~~~Gl~~~~~~V~~ra~ylf~r~~ 292 (722)
+ .++++.||..++.++.++.
T Consensus 82 L------~d~~~~VR~~A~~aL~~~~ 101 (131)
T 1te4_A 82 L------EDDSGFVRSGAARSLEQIG 101 (131)
T ss_dssp H------HHCCTHHHHHHHHHHHHHC
T ss_pred H------cCCCHHHHHHHHHHHHHhC
Confidence 3 4688899999999988775
No 82
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=45.51 E-value=3.2e+02 Score=29.51 Aligned_cols=234 Identities=14% Similarity=0.196 Sum_probs=122.7
Q ss_pred HHHHHHhhhccCCCccCCCcchHHHHHHHHHHHHHHHHhcCCCChhHHhHHHHHHHHHHHhcCcccccchHHHHHHHHhc
Q 004950 395 IMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAE 474 (722)
Q Consensus 395 i~~l~~lakgf~~~~~~~~~~~~~~~~~~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~lg~~v~p~lp~li~~ll~~ 474 (722)
-..|.++.|-|++ ...++++..+.+++ ..+..||-.+.+-+ ...+-. -+++++++.|..-
T Consensus 49 aQ~I~kffk~FP~------------l~~~Ai~a~lDLcE--Ded~~IR~qaik~L---p~~ck~---~~i~kiaDvL~Ql 108 (507)
T 3u0r_A 49 AQFIPKFFKHFPE------------LADSAINAQLDLCE--DEDVSIRRQAIKEL---PQFATG---ENLPRVADILTQL 108 (507)
T ss_dssp HHHHHHHGGGCGG------------GHHHHHHHHHHHHT--CSSHHHHHHHHHHG---GGGCCT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHhhChh------------hHHHHHHHHHHHHh--cccHHHHHHHHHhh---HHHhhh---hhhhhHHHHHHHH
Confidence 3456788888874 45678888888888 77788877554444 333333 4466666655544
Q ss_pred CChhhHHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Q 004950 475 SEPKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHD 554 (722)
Q Consensus 475 ~~~~~~~~fL~~~~qli~~f~~~~~~~l~~ll~~l~~~v~~~l~~~~~~~~p~~~~d~~r~~~~l~r~y~~fl~~i~~~~ 554 (722)
..+.+-.++-.+-+.++.-++.+-...+.. ++.++.+ +.|. +++-.+.|+..-+..-
T Consensus 109 Lqtdd~~E~~~V~~sL~sllk~Dpk~tl~~----lf~~i~~-------------~~e~------~Rer~lkFi~~kl~~l 165 (507)
T 3u0r_A 109 LQTDDSAEFNLVNNALLSIFKMDAKGTLGG----LFSQILQ-------------GEDI------VRERAIKFLSTKLKTL 165 (507)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHCHHHHHHH----HHHHHHH-------------SCHH------HHHHHHHHHHHHGGGS
T ss_pred HhccchHHHHHHHHHHHHHHhcChHHHHHH----HHHHHcc-------------cchH------HHHHHHHHHHHHHhhc
Confidence 444444445555566677677654443333 3333332 1133 5566788888877664
Q ss_pred CCeeecCCCCcCChHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhCCCCCCCCchhHHHHHHHhhhhhhhhhcccC
Q 004950 555 LSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDWCARPFVEEKVPGFQSFMIEAFAMNCCLYSVLD 634 (722)
Q Consensus 555 ~~~vl~s~~~~~~l~~~l~~l~~~~~~~~d~~~~k~a~~~l~~li~~~~~~~~~~~~~~gf~~fl~~~~~~~~~~~~~~~ 634 (722)
...++. .-.+.++...+.-++ .|.+. .=|..+-.++....-. ..++|..+ +++-+ .-++-+.
T Consensus 166 ~~~~l~-----~E~E~~i~~~ikK~L--~DVT~--~EF~L~m~lL~~lkl~----~t~~g~qe-Lv~ii----~eQa~L~ 227 (507)
T 3u0r_A 166 PDEVLT-----KEVEELILTESKKVL--EDVTG--EEFVLFMKILSGLKSL----QTVSGRQQ-LVELV----AEQADLE 227 (507)
T ss_dssp CTTTSC-----HHHHHHHHHHHHHHT--TSCCH--HHHHHHHHHHHTSGGG----SSHHHHHH-HHHHH----HHHHTTT
T ss_pred chhhcc-----HHHHHHHHHHHHHHh--ccccH--HHHHHHHHHHHhcccc----cCchHHHH-HHHHH----HHHHhcc
Confidence 444432 224444443333233 23322 1123333333222111 12344322 22211 1122234
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHH-----HhhhHHHHHHHhccCCCCC-CCH-----HHHHHHHHHh
Q 004950 635 KSFEFGDANTLVLFGEIVLAQKVMYE-----KFGNDFLVHFVTKGFPSAH-CPP-----DLAEQYCQKL 692 (722)
Q Consensus 635 ~~F~~~Da~~~~~l~eia~~l~~l~~-----~~g~e~~~~l~~~~lP~~~-~~~-----~~~~~f~~~l 692 (722)
..||..|.... +.+..+++.-.- ..+..|+.|+.+..||..+ +++ +.+-++++.+
T Consensus 228 ~~f~~sD~e~v---dRlI~C~~~ALP~FS~~v~StkFv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~l 293 (507)
T 3u0r_A 228 QTFNPSDPDCV---DRLLQCTRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLL 293 (507)
T ss_dssp SCCCSSCHHHH---HHHHHHHHHHGGGCBTTBCCHHHHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHH
T ss_pred CCCCCcCHHHH---HHHHHHHHHHHHHhccCCChHHHHHHHHHhhccchhhccccccchHHHHHHHHHH
Confidence 67887787743 344444443321 1135689999888888653 323 2677888777
No 83
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=45.44 E-value=4.7e+02 Score=31.40 Aligned_cols=104 Identities=14% Similarity=0.235 Sum_probs=67.0
Q ss_pred hHHHHHHHHHHHHHHHH-hcCCCChhHHhHHHHHHHHHHHhcCcccccchHH----HHHHHHhcC--ChhhHHH-HHHHH
Q 004950 416 AIGLMFKQTLDVLLQIL-VVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPK----ALEQLLAES--EPKEMAG-FLVLL 487 (722)
Q Consensus 416 ~~~~~~~~~~~vi~~~l-~~~~~~~~Vre~~~~~~~r~v~~lg~~v~p~lp~----li~~ll~~~--~~~~~~~-fL~~~ 487 (722)
.+..++..+.+--+..+ ..|..+++.|..-..++++++..+-+.++.+=|. +++.++-.+ +.++..+ -|.++
T Consensus 820 ~~~~il~~vf~~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~~f~~l~~l~~~~~~~~i~~i~wa~kh~~r~i~~~~l~~~ 899 (1073)
T 3gjx_A 820 EIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQIL 899 (1073)
T ss_dssp GHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHHHHHHHHCGGGTTTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHHcCCCChhHHHHHHHHH
Confidence 34555655555555544 4688889999999999999999987766543244 555554433 2233322 23444
Q ss_pred HHHHHHHhh---hHHHHHHhhhHHHHHHHHhhccC
Q 004950 488 NQLICKFNT---LVHDILDEVFPAIAGRIFNIIPR 519 (722)
Q Consensus 488 ~qli~~f~~---~~~~~l~~ll~~l~~~v~~~l~~ 519 (722)
-.+++.+.+ -..++.++.+..+++.+|.++..
T Consensus 900 ~~ll~~~~~~~~~~~~F~~~~~~~~~~~i~~v~td 934 (1073)
T 3gjx_A 900 FTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTD 934 (1073)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 444444332 25678888888999999999885
No 84
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=44.60 E-value=2.8e+02 Score=28.50 Aligned_cols=227 Identities=11% Similarity=0.088 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhcccCchhhhhcccccHHhHHHHH-----HhCCCCCCChhHHHHHHHHHHHhhHHHHhhcCCCh---H
Q 004950 190 EEVEAALTLLYALGESMSEEAMRTGAGHLSELVPML-----LQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYI---P 261 (722)
Q Consensus 190 ~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l-----~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~~p~~L---~ 261 (722)
..++.|+.+|..++-.-.....=-..+.++.++..| .........++.++..+.+++..-+.--..++..+ .
T Consensus 47 ~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~ 126 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMK 126 (354)
T ss_dssp GTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Q ss_pred HHHHHhccccCCCCCCchhHHHHHHHHHHHHH----HhhccchHH--HHHHHHHhhhhhhhhccCCcccccCCCCchhhH
Q 004950 262 VVLAAFLDERGIHHPNVHVSRRASYLFMRVVK----LLKAKLVPF--IENILQSLQDTIARFTSMNYASKELSGSEDGSH 335 (722)
Q Consensus 262 ~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k----~~r~~L~~~--~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~ 335 (722)
.+++.++ .-+.++++.++..|+.++..++. ..|..+... ++.++..+.. ..+.--
T Consensus 127 GaIp~LV--~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~-----------------~~~~~~ 187 (354)
T 3nmw_A 127 GCMRALV--AQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALE-----------------VKKEST 187 (354)
T ss_dssp HHHHHHH--HGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHH-----------------CCCHHH
T ss_pred CcHHHHH--HHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhc-----------------CCCHHH
Q ss_pred HHHHHHHHHccCCCChhhhHHHH--HHhHHHHHHHHHHHHHhhhccCCchhhhHHHhHHHHHHHHHHhhhccCCCccCCC
Q 004950 336 IFEAIGLLIGMEDVPPEKQSDYL--SSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSS 413 (722)
Q Consensus 336 L~Eaig~Lis~~~~~~e~~~~~l--~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~lakgf~~~~~~~~ 413 (722)
.-.+++.|-......++.+.... ...+.+|++-+ ...++.+.........-++..++....+-+
T Consensus 188 ~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL-------~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~------- 253 (354)
T 3nmw_A 188 LKSVLSALWNLSAHCTENKADICAVDGALAFLVGTL-------TYRSQTNTLAIIESGGGILRNVSSLIATNE------- 253 (354)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHT-------TCCCSSSCCHHHHHHHHHHHHHHHHHTTCH-------
T ss_pred HHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHh-------ccCCCcccHHHHHHHHHHHHHHHhhccCCH-------
Q ss_pred cchHHHHHHH--HHHHHHHHHhcCCCChhHHhHHHHHHHHHH
Q 004950 414 RPAIGLMFKQ--TLDVLLQILVVFPKVEPLRCKVTSFIHRMV 453 (722)
Q Consensus 414 ~~~~~~~~~~--~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v 453 (722)
...+.+.+ +++.+...+. ..+..+++.++.+++.+.
T Consensus 254 --~~~~~i~~~g~i~~Lv~lL~--~~~~~v~~~A~~aL~nLa 291 (354)
T 3nmw_A 254 --DHRQILRENNCLQTLLQHLK--SHSLTIVSNACGTLWNLS 291 (354)
T ss_dssp --HHHHHHHTTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHT
T ss_pred --HHHHHHHHcCCHHHHHHHHc--CCChHHHHHHHHHHHHHh
No 85
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=43.76 E-value=3.2e+02 Score=30.69 Aligned_cols=122 Identities=13% Similarity=0.167 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHhcCC----CCCChhhHHHHHHHHHHhcccCchhhhhcccccHHhHHHH
Q 004950 149 EYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFS----ADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPM 224 (722)
Q Consensus 149 e~Rk~l~~ll~~i~~l~~~l~l~~i~~~l~~~l~~~----~~~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~ 224 (722)
.+|+.++..++....-+.+.+ ..|...+... ...+-+++-.-|-+| ..+|+-= .+..-..++..
T Consensus 73 ~~~~~V~~AL~~~~~Gd~~~Y-----d~L~~~~~~~~~~~d~~~~~~L~~~L~aL---s~~Vs~L----d~~~~~~LV~a 140 (649)
T 3tj1_A 73 MYSRFVKSALDDLDKNDSTQI-----GIIANQVALPSKNPERINDKNLNILLDIL---SSNINRI----ESSRGTFLIQS 140 (649)
T ss_dssp HHHHHHHHHHHHHHTTCCHHH-----HHHHHHHHSCTTCTTSCCHHHHHHHHHHH---HHTGGGG----CSGGGHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHH-----HHHHHHhcCCCcCcCcCCHHHHHHHHHHH---Hhhhhhc----CchhHHHHHHH
Confidence 388888888877666555543 3333333321 112223333333333 3343311 01234568888
Q ss_pred HHhC-CCCCCChhHHHHHHHHHHHhhHHHHh----hcCCChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHH
Q 004950 225 LLQT-KLPCHSNRLVALVYLETVTRYMKFIQ----EHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVK 293 (722)
Q Consensus 225 l~~~-~i~~~~hp~V~~~~~e~i~RY~~~~~----~~p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k 293 (722)
|++. .-...+. .++..|..|+. .+|.|+.++|..++ .++..+. ....+.=.++.++.+
T Consensus 141 IL~~~~W~~r~~--------~~v~~Y~~FL~~LvSa~~~yl~~vl~mLV--~~F~~~~-~~~~~~H~~L~~Il~ 203 (649)
T 3tj1_A 141 IINFEKWWELPP--------HTLSKYIYFIKILCSSIPKWWQDVSMILV--SCFILPI-KQTVCHHDMLKYFLR 203 (649)
T ss_dssp HHTCTTGGGSCH--------HHHHHHHHHHHHHHHHCGGGHHHHHHHHH--HGGGSCH-HHHHHHHHHHHHHHH
T ss_pred HhCCchhccCCH--------HHHHHHHHHHHHHHhccHHHHHHHHHHHH--HhccCCC-cccHHHHHHHHHHHH
Confidence 8875 3322222 24456666654 59999999999998 5665432 233443334444443
No 86
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=43.44 E-value=2.8e+02 Score=28.22 Aligned_cols=152 Identities=9% Similarity=0.151 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHHHHHc--Chhh-HHHHHHHHHHHHhcC--CCCC---ChhhHHHHHHHHHHhcccCchhhhhccccc
Q 004950 146 RMVEYRKDLLVLLRSVGRV--APEV-TQVFIRNSLANAVTF--SADR---NVEEVEAALTLLYALGESMSEEAMRTGAGH 217 (722)
Q Consensus 146 ~F~e~Rk~l~~ll~~i~~l--~~~l-~l~~i~~~l~~~l~~--~~~~---~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~ 217 (722)
..+..||++-.++.....- +++. +-+++.+++...+.. .+.+ .-+.+.+.-..+..+++.+.+ .
T Consensus 41 ~lR~vKkeiLkLiet~i~~~~d~~~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~--------~ 112 (321)
T 1w9c_A 41 SMRTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITA--------E 112 (321)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSCHHHHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGG--------G
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhh--------h
Confidence 3455556666666554433 3333 345555666555531 1222 345555566666666666653 3
Q ss_pred HHhHHHHHH-------hCCCCCCChhHHHHHHHHHHHhhHHH-----HhhcCCChHHHHHHhccccCCCCCCchhHHHHH
Q 004950 218 LSELVPMLL-------QTKLPCHSNRLVALVYLETVTRYMKF-----IQEHTQYIPVVLAAFLDERGIHHPNVHVSRRAS 285 (722)
Q Consensus 218 l~~l~~~l~-------~~~i~~~~hp~V~~~~~e~i~RY~~~-----~~~~p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ 285 (722)
+|.++..+. ..+...+ |-.|..+|.++...... +.--|+.+..++..++ -|+.|++..|...+.
T Consensus 113 vp~Il~~VFe~TL~MI~~df~ey--PehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsii--Wa~kH~~r~V~e~gL 188 (321)
T 1w9c_A 113 IPQIFDAVFECTLNMINKDFEEY--PEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSII--WAFKHTMRNVADTGL 188 (321)
T ss_dssp HHHHHHHHHHHHHHHHSSTTTCS--HHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHH--HHTTCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccccC--hHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHH--HHcCCCCchHHHHHH
Confidence 555554332 2345544 56777888887766543 5556778888999998 899999999999998
Q ss_pred HHHHHHHHHhhccchHHHHHHHHHh
Q 004950 286 YLFMRVVKLLKAKLVPFIENILQSL 310 (722)
Q Consensus 286 ylf~r~~k~~r~~L~~~~~~il~~l 310 (722)
-.+..+.+.+.+. ..+..++.+.+
T Consensus 189 ~il~~ll~n~~~~-~~~~~~Fy~~f 212 (321)
T 1w9c_A 189 QILFTLLQNVAQE-EAAAQSFYQTY 212 (321)
T ss_dssp HHHHHHHHHHHHC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-hHHHHHHHHHH
Confidence 8888888887642 24555544433
No 87
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=42.62 E-value=74 Score=33.10 Aligned_cols=152 Identities=14% Similarity=0.088 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHHHcccCcccccCCccCCCCChhHHHHHH-----------HHHHHHHHHHHHHHHcChhhHHHHHHH
Q 004950 107 EQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMV-----------EYRKDLLVLLRSVGRVAPEVTQVFIRN 175 (722)
Q Consensus 107 ~~~~~l~~Ll~~li~km~yp~~~~~~~d~~~~~~~ede~~F~-----------e~Rk~l~~ll~~i~~l~~~l~l~~i~~ 175 (722)
+.+..+.+++..+...-.|+..+ --.-|- +.||=+--.+..++.. ++.++ .+-+
T Consensus 43 kc~~~l~kll~l~~~G~~f~~~e-------------~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~i-Lv~N 107 (355)
T 3tjz_B 43 KCAHILTKILYLINQGEHLGTTE-------------ATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDVI-IVTS 107 (355)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHH-------------HHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCGG-GGHH
T ss_pred HHHHHHHHHHHHHHCCCCCchhH-------------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHHH-HHHH
Confidence 34667888888877774444221 001111 1333333334444444 45555 3444
Q ss_pred HHHHHhcCCCCCChhhHHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhh
Q 004950 176 SLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQE 255 (722)
Q Consensus 176 ~l~~~l~~~~~~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~ 255 (722)
.+.+=+++ ++--..=.||..|..+.+. +.+..+.+.+-+. ..+.||.||-++.-.+. +-+..
T Consensus 108 sl~kDl~~---~N~~iR~lALRtL~~I~~~----------~m~~~l~~~lk~~--L~d~~pyVRk~A~l~~~---kL~~~ 169 (355)
T 3tjz_B 108 SLTKDMTG---KEDSYRGPAVRALCQITDS----------TMLQAIERYMKQA--IVDKVPSVSSSALVSSL---HLLKC 169 (355)
T ss_dssp HHHHHHHS---SCHHHHHHHHHHHHHHCCT----------TTHHHHHHHHHHH--HTCSSHHHHHHHHHHHH---HHTTT
T ss_pred HHHhhcCC---CcHhHHHHHHHHHhcCCCH----------HHHHHHHHHHHHH--cCCCCHHHHHHHHHHHH---HHhcc
Confidence 44444443 3334556777777666543 2344555555542 34578999999988766 34555
Q ss_pred cCCChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHH
Q 004950 256 HTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVK 293 (722)
Q Consensus 256 ~p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k 293 (722)
.|+.+...++.+- ..+.++|+-|..+|--++..+++
T Consensus 170 ~pe~v~~~~~~l~--~ll~d~n~~V~~~Al~lL~ei~~ 205 (355)
T 3tjz_B 170 SFDVVKRWVNEAQ--EAASSDNIMVQYHALGLLYHVRK 205 (355)
T ss_dssp CHHHHHTTHHHHH--HHTTCSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHH--HHhcCCCccHHHHHHHHHHHHHh
Confidence 6766555555444 24456788888888666666665
No 88
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=40.99 E-value=2.8e+02 Score=27.42 Aligned_cols=103 Identities=12% Similarity=0.093 Sum_probs=63.2
Q ss_pred CChhhHHHHHHHHHHhcccCchhhhhcccccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhhcCCChHHHHHH
Q 004950 187 RNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAA 266 (722)
Q Consensus 187 ~~W~~~EaaL~~l~~~gE~i~~~~~~~~~~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~~p~~L~~vL~~ 266 (722)
.+....-.+|=.+.++-+.....+.+-.....+.++|.|+.. ..+++..||-..-+++-...+.. | -..+..+
T Consensus 99 ~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveK--lGd~k~~vR~~~r~il~~l~~v~---~--~~~v~~~ 171 (266)
T 2of3_A 99 TNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLK--TGEAKDNMRTSVRDIVNVLSDVV---G--PLKMTPM 171 (266)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHG--GGCSSHHHHHHHHHHHHHHHHHH---C--HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH--hCCChHHHHHHHHHHHHHHHHHC---C--HHHHHHH
Confidence 355556666666665544332211111112234566776663 34567789999888886665532 2 2346777
Q ss_pred hccccCCCCCCchhHHHHHHHHHHHHHHhhcc
Q 004950 267 FLDERGIHHPNVHVSRRASYLFMRVVKLLKAK 298 (722)
Q Consensus 267 ~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~ 298 (722)
++ .|+.|.|.++|.-++..+..++......
T Consensus 172 l~--~g~ksKN~R~R~e~l~~l~~li~~~G~~ 201 (266)
T 2of3_A 172 LL--DALKSKNARQRSECLLVIEYYITNAGIS 201 (266)
T ss_dssp HH--HGGGCSCHHHHHHHHHHHHHHHHHHCSG
T ss_pred HH--HHHccCCHHHHHHHHHHHHHHHHhcCCC
Confidence 77 5999999999988888888777765443
No 89
>3bpj_A Eukaryotic translation initiation factor 3 subuni; EIF3S1, structural genomics, limited proteolysis, phosphoprotein, protein biosynthesis; 1.85A {Homo sapiens}
Probab=36.20 E-value=60 Score=25.88 Aligned_cols=57 Identities=14% Similarity=0.138 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHH
Q 004950 142 EEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLY 200 (722)
Q Consensus 142 ede~~F~e~Rk~l~~ll~~i~~l~~~l~l~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~ 200 (722)
.-+++|.+||+-++..+.. +.- ...+..++..++..+..+.+..+-+.+...|-.++
T Consensus 11 ~Tk~dF~~~~~~l~~kl~~-~~k-s~~y~~f~~~lir~l~~~L~~~dikkv~s~l~~l~ 67 (80)
T 3bpj_A 11 SSRDDFTEFGKLLKDKITQ-YEK-SLYYASFLEVLVRDVCISLEIDDLKKITNSLTVLC 67 (80)
T ss_dssp CSHHHHHHHHHHHHHHHGG-GTT-STTHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHh-ccC-ChhHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 4578999999999988654 222 33667888888888876655556677777776664
No 90
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=30.15 E-value=39 Score=37.52 Aligned_cols=91 Identities=8% Similarity=0.065 Sum_probs=58.7
Q ss_pred hhHHHHHHHHHHHhhHHHHhhcCCChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhhh
Q 004950 235 NRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTI 314 (722)
Q Consensus 235 hp~V~~~~~e~i~RY~~~~~~~p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L~~~~~~il~~l~~ll 314 (722)
...||...+.-+ ||. ...=.+ ++.++++++ .|+.+++..||+.|+.++.-++ ....++.+++.+.+.|
T Consensus 276 ~WEVRHGGLLGL-KYL--~DLL~~-Ld~Vv~aVL--~GL~D~DDDVRAVAAetLiPIA------~p~~l~~LL~iLWd~L 343 (800)
T 3oc3_A 276 DWQVQFSGLIAL-GYL--KEFVED-KDGLCRKLV--SLLSSPDEDIKLLSAELLCHFP------ITDSLDLVLEKCWKNI 343 (800)
T ss_dssp CHHHHHHHHHHH-HHT--GGGCCC-HHHHHHHHH--HHTTCSSHHHHHHHHHHHTTSC------CSSTHHHHHHHHHHHH
T ss_pred CeeehhhhHHHH-HHH--HHHHHH-HHHHHHHHH--hhcCCcccHHHHHHHHHhhhhc------chhhHHHHHHHHHHHh
Confidence 355655554443 344 111112 899999999 8999999999999998887777 2346788888888877
Q ss_pred hhhccCCcccccCCCCchhhHHHHHHHHHHcc
Q 004950 315 ARFTSMNYASKELSGSEDGSHIFEAIGLLIGM 346 (722)
Q Consensus 315 ~~~~~~~~~~~~~~~~~d~l~L~Eaig~Lis~ 346 (722)
.-. +++ + .+---++.-++.|.+.
T Consensus 344 ~~L-------DDL-S-ASTgSVMdLLAkL~s~ 366 (800)
T 3oc3_A 344 ESE-------ELI-S-VSKTSNLSLLTKIYRE 366 (800)
T ss_dssp HTC-------CSC-C-TTHHHHHHHHHHHHHH
T ss_pred hhh-------ccc-c-hhhHHHHHHHHHHHcC
Confidence 511 122 1 2233566666666664
No 91
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=29.05 E-value=7.2e+02 Score=28.71 Aligned_cols=235 Identities=10% Similarity=0.062 Sum_probs=131.6
Q ss_pred ccHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHhhcC----CChHHHHHHhccccCCCCCCchhHHHHHHHHHHH
Q 004950 216 GHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHT----QYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRV 291 (722)
Q Consensus 216 ~~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~~~p----~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~ 291 (722)
+.++.++.++-+ +|+.++..+.|.++.-+.==..+. ..+ +.|..++ .+.+..+|.+|...+.++
T Consensus 290 G~v~~li~Ll~s------~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv-~~L~~Ll-----~s~~~~vr~~Al~~L~kl 357 (810)
T 3now_A 290 GILQMILAMATT------DDELQQRVACECLIAASSKKDKAKALCEQGV-DILKRLY-----HSKNDGIRVRALVGLCKL 357 (810)
T ss_dssp THHHHHHHHHHS------SCHHHHHHHHHHHHHHTTSHHHHHTTHHHHH-HHHHHHT-----TCSCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHhCC------CCHHHHHHHHHHHHHHcCCcHHHHHHHHcCc-HHHHHHH-----cCCCHHHHHHHHHHHHHh
Confidence 556666655432 578899999998887433211111 124 3444444 245567888887667666
Q ss_pred HHHh----h-ccch-HHHHHHHHHhhhhhhhhccCCcccccCCCCchhhHHHHHHHHHHccCCCChhhhHHHH--HHhHH
Q 004950 292 VKLL----K-AKLV-PFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYL--SSLLT 363 (722)
Q Consensus 292 ~k~~----r-~~L~-~~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~L~Eaig~Lis~~~~~~e~~~~~l--~~ll~ 363 (722)
-+.. + +.+. .-+++++..+..+|.... ...+.+-+-.|++++|.. .++.+.... ..+++
T Consensus 358 ~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~---------~d~~v~~~AveaLayLS~----~~~vk~~lv~d~g~Ip 424 (810)
T 3now_A 358 GSYGGQDAAIRPFGDGAALKLAEACRRFLIKPG---------KDKDIRRWAADGLAYLTL----DAECKEKLIEDKASIH 424 (810)
T ss_dssp HTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSS---------CCSSHHHHHHHHHHHHTT----SHHHHHHHHHCHHHHH
T ss_pred ccccccCccccchhhccHHHHHHHHHHHhcCCC---------CCHHHHHHHHHHHHHHhC----CcHHHHHHHHccchHH
Confidence 5422 1 2222 236777888877775220 023456677777777755 344444443 36777
Q ss_pred HHHHHHHHHHHhhhccCCchhhhHHHhHHHHHHHHHHhhhccCCCc---------------cCCCcc-----h----HHH
Q 004950 364 PLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERL---------------VTSSRP-----A----IGL 419 (722)
Q Consensus 364 pl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~lakgf~~~~---------------~~~~~~-----~----~~~ 419 (722)
++++-+.. ++. .. ....+.++++++.|..... .+...| . +..
T Consensus 425 ~LV~LL~s--------~d~-~i-----~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~ 490 (810)
T 3now_A 425 ALMDLARG--------GNQ-SC-----LYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITV 490 (810)
T ss_dssp HHHHHHHT--------TCG-GG-----HHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHH
T ss_pred HHHHHhCC--------CCh-HH-----HHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHH
Confidence 77755431 111 11 3567888899988763210 000011 0 112
Q ss_pred HHH-HHHHHHHHHHhcCCCChhHHhHHHHHHHHHHHhc--Cccc--ccchHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 004950 420 MFK-QTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTL--GASV--FPYLPKALEQLLAESEPKEMAGFLVLLNQLIC 492 (722)
Q Consensus 420 ~~~-~~~~vi~~~l~~~~~~~~Vre~~~~~~~r~v~~l--g~~v--~p~lp~li~~ll~~~~~~~~~~fL~~~~qli~ 492 (722)
++. .+.+.+..++. ..+..+++.+..++..+...- ...+ ...+|.++..| ..-+..-.....|-++.+..
T Consensus 491 VveaGaVp~LV~LL~--s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL-~s~~~~~k~~Aa~AL~nL~~ 565 (810)
T 3now_A 491 LANEGITTALCALAK--TESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMA-LEGTEKGKRHATQALARIGI 565 (810)
T ss_dssp HHHTTHHHHHHHHHT--CCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHH
T ss_pred HHHCcCHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH-ccCCHHHHHHHHHHHHHHhc
Confidence 222 37889999998 467899999999999887431 1112 24577788744 33333333445566666654
No 92
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=27.41 E-value=5.5e+02 Score=26.82 Aligned_cols=61 Identities=13% Similarity=0.119 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHhhhccCCccc--h--hhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHc
Q 004950 60 ASKKLLNEVLPSVFYVMQNCEVDT--T--FSIVQFLSGYVATMKSLSPLKEEQRLHAGQILEVILTQI 123 (722)
Q Consensus 60 ~~~~~l~~~~plvL~~~~~~d~~~--~--~~~~~F~~~~l~~lk~~~~l~~~~~~~l~~Ll~~li~km 123 (722)
.++.||+-+..+++++..+.|.+. + -..-.|+..+++.+.+.+ +..++++..++..++.|.
T Consensus 141 ~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeD---pRERd~LktiLhrIY~Kf 205 (392)
T 2jak_A 141 AAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSED---PRERDFLKTTLHRIYGKF 205 (392)
T ss_dssp TTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSC---HHHHHHHHHHHHHHHHHC
T ss_pred cCChhHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCC---hHHHHHHHHHHHHHHHHH
Confidence 467788888888888877754442 1 134567888887766544 667777777777777664
No 93
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=26.48 E-value=5.9e+02 Score=26.79 Aligned_cols=123 Identities=15% Similarity=0.050 Sum_probs=69.7
Q ss_pred cHHhHHHHHHhCCCCCCChhHHHHHHHHHHHhhHHHHh------hcCCChHHHHHHhccccCCCCCCchhHHHHHHHHHH
Q 004950 217 HLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQ------EHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMR 290 (722)
Q Consensus 217 ~l~~l~~~l~~~~i~~~~hp~V~~~~~e~i~RY~~~~~------~~p~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r 290 (722)
.++.++..|-+ +++.++..+.+.+...+.--. .....+|..+. .+.++++.++..|+.++..
T Consensus 3 ~l~~lv~~L~s------~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~------lL~s~~~~~~~~A~~aL~n 70 (457)
T 1xm9_A 3 TIPKAVQYLSS------QDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVD------LLRSPNQNVQQAAAGALRN 70 (457)
T ss_dssp CHHHHHHHHHS------SCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHH------HTTSSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCC------CCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHH------HHcCCCHHHHHHHHHHHHH
Confidence 36667766643 346788888888887652100 11222343333 3346788899999999999
Q ss_pred HHH---HhhccchH--HHHHHHHHhhhhhhhhccCCcccccCCCCchhhHHHHHHHHHHccCCCChhhhHHHHHHhHHHH
Q 004950 291 VVK---LLKAKLVP--FIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPL 365 (722)
Q Consensus 291 ~~k---~~r~~L~~--~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~L~Eaig~Lis~~~~~~e~~~~~l~~ll~pl 365 (722)
++. ..|..+.. -++.+++.+..- . ..+-+.....+++.|.+. ++.+...++..++|+
T Consensus 71 La~~~~~~k~~i~~~G~i~~Lv~lL~~~---~-----------~~~~~~~a~~aL~nLa~~----~~~~~~i~~g~i~~L 132 (457)
T 1xm9_A 71 LVFRSTTNKLETRRQNGIREAVSLLRRT---G-----------NAEIQKQLTGLLWNLSST----DELKEELIADALPVL 132 (457)
T ss_dssp HHSSCHHHHHHHHHTTCHHHHHHHHTTC---C-----------CHHHHHHHHHHHHHHHTS----SSTHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHcCCHHHHHHHHhhC---C-----------CHHHHHHHHHHHHHHhcC----HHhHHHHHhccHHHH
Confidence 984 46666643 466666665310 0 112122333444444443 334554555777877
Q ss_pred HHHH
Q 004950 366 CQQV 369 (722)
Q Consensus 366 ~~~l 369 (722)
++-+
T Consensus 133 v~ll 136 (457)
T 1xm9_A 133 ADRV 136 (457)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 7766
No 94
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=24.17 E-value=95 Score=32.68 Aligned_cols=82 Identities=21% Similarity=0.317 Sum_probs=53.1
Q ss_pred HHHHHHhcCCC-ChhHHhHHHHHHHHHHHhcCcccccchHHHHHHHHhc----CC-hhhHHHHHHHHHHHHHHH----hh
Q 004950 427 VLLQILVVFPK-VEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAE----SE-PKEMAGFLVLLNQLICKF----NT 496 (722)
Q Consensus 427 vi~~~l~~~~~-~~~Vre~~~~~~~r~v~~lg~~v~p~lp~li~~ll~~----~~-~~~~~~fL~~~~qli~~f----~~ 496 (722)
.+.++++.|.+ +..=|+....++||+-..+. ...+++.+.+...+-. .+ ..++++.|.++|.++..| |+
T Consensus 175 Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~-~~R~~Irk~i~nif~~fiye~e~~~GIaeLLeilgsIIngfa~PLKe 253 (392)
T 2jak_A 175 FVLQLLELFDSEDPRERDFLKTTLHRIYGKFL-GLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKE 253 (392)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCH
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhccCCCCcH
Confidence 45556666553 34555566888898877653 3345566666554432 22 257899999999999999 46
Q ss_pred hHHHHHHhhhHHH
Q 004950 497 LVHDILDEVFPAI 509 (722)
Q Consensus 497 ~~~~~l~~ll~~l 509 (722)
+...++.+.+.||
T Consensus 254 ehk~Fl~~vLlPL 266 (392)
T 2jak_A 254 EHKIFLLKVLLPL 266 (392)
T ss_dssp HHHHHHHHTTGGG
T ss_pred HHHHHHHHHhHhh
Confidence 6777666655555
No 95
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=22.32 E-value=63 Score=19.13 Aligned_cols=21 Identities=29% Similarity=0.588 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHcCh
Q 004950 146 RMVEYRKDLLVLLRSVGRVAP 166 (722)
Q Consensus 146 ~F~e~Rk~l~~ll~~i~~l~~ 166 (722)
.|..|||+.+.+++.+.-+-|
T Consensus 2 rfkrfrkkfkklfkklspvip 22 (27)
T 2ket_A 2 RFKRFRKKFKKLFKKLSPVIP 22 (27)
T ss_dssp CHHHHHHHHHHHHHHHSCSCH
T ss_pred cHHHHHHHHHHHHHhcCcccc
Confidence 478899999999987765544
No 96
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=20.03 E-value=5.4e+02 Score=24.03 Aligned_cols=95 Identities=9% Similarity=0.190 Sum_probs=63.7
Q ss_pred CChHHHHHHhccccCCCCCCchhHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhhhhhhccCCcccccCCCCchhhHHH
Q 004950 258 QYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIF 337 (722)
Q Consensus 258 ~~L~~vL~~~l~~~Gl~~~~~~V~~ra~ylf~r~~k~~r~~L~~~~~~il~~l~~ll~~~~~~~~~~~~~~~~~d~l~L~ 337 (722)
+.+|++|..+++ +-+. +. .+|.-|+.++..+|+.+...-...-+.+...+...+.-. ...---.|
T Consensus 87 ~LipsvLtCll~-k~l~-~~-~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp------------~~~l~t~Y 151 (196)
T 4atg_A 87 QILPSLLTCVIG-KSIV-DD-DVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDP------------NRSEDSQY 151 (196)
T ss_dssp HHHHHHHHHHHC-TTCC-CH-HHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCT------------TSCHHHHH
T ss_pred HHHHHHHHHHHh-cccC-HH-HHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCC------------CCChHHHH
Confidence 468899999885 3342 22 799999999999999988776666677777776655311 11123455
Q ss_pred HHHHHHHccCCCChhhhHHHHHHhHHHHHHHHHHHHH
Q 004950 338 EAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLL 374 (722)
Q Consensus 338 Eaig~Lis~~~~~~e~~~~~l~~ll~pl~~~l~~~~~ 374 (722)
-|+--|.+.. + +.++.++-|.+..+.+-+.
T Consensus 152 GAi~GL~~lG---~----~~vr~~llP~l~~~~~~~~ 181 (196)
T 4atg_A 152 GALYCLSILS---K----NVVNTVIREHAEEYKRTIG 181 (196)
T ss_dssp HHHHHHHHHC---H----HHHHTHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhH---H----HHHHHhhhcCHHHHHHHHH
Confidence 5555555542 2 5778888888887766553
Done!