Query 004951
Match_columns 722
No_of_seqs 395 out of 2637
Neff 8.2
Searched_HMMs 46136
Date Thu Mar 28 15:36:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004951.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004951hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2301 Voltage-gated Ca2+ cha 100.0 4.1E-63 8.8E-68 594.4 26.2 449 138-676 877-1409(1592)
2 KOG2302 T-type voltage-gated C 100.0 2.7E-60 5.9E-65 518.1 34.9 459 139-676 1162-1693(1956)
3 KOG2301 Voltage-gated Ca2+ cha 100.0 1.3E-55 2.7E-60 529.9 27.2 484 138-678 105-672 (1592)
4 KOG2302 T-type voltage-gated C 100.0 2.4E-53 5.1E-58 463.9 22.2 560 139-713 657-1439(1956)
5 PF00520 Ion_trans: Ion transp 99.9 3.5E-22 7.5E-27 198.2 12.2 198 458-663 1-200 (200)
6 KOG3713 Voltage-gated K+ chann 99.9 8.4E-21 1.8E-25 201.8 16.7 246 409-679 172-442 (477)
7 PLN03223 Polycystin cation cha 99.8 7E-19 1.5E-23 202.9 21.4 200 456-675 1178-1430(1634)
8 KOG1545 Voltage-gated shaker-l 99.7 1.4E-17 3.1E-22 168.3 7.1 248 407-679 169-458 (507)
9 PF00520 Ion_trans: Ion transp 99.7 8.7E-17 1.9E-21 159.3 10.9 159 138-296 2-200 (200)
10 KOG3713 Voltage-gated K+ chann 99.7 4.4E-16 9.5E-21 166.0 14.5 209 95-313 207-443 (477)
11 PLN03223 Polycystin cation cha 99.5 8.3E-13 1.8E-17 153.5 19.1 172 135-306 1175-1428(1634)
12 PF08016 PKD_channel: Polycyst 99.5 6.5E-13 1.4E-17 148.0 17.7 188 457-669 214-424 (425)
13 KOG3599 Ca2+-modulated nonsele 99.5 1E-12 2.2E-17 152.5 17.6 198 456-676 468-688 (798)
14 KOG4390 Voltage-gated A-type K 99.4 3.8E-15 8.3E-20 151.9 -7.2 239 409-679 165-421 (632)
15 KOG1545 Voltage-gated shaker-l 99.3 1.5E-12 3.3E-17 132.2 2.7 161 137-302 257-448 (507)
16 TIGR00870 trp transient-recept 99.2 4.4E-10 9.6E-15 134.4 18.6 220 456-679 391-627 (743)
17 KOG4390 Voltage-gated A-type K 99.0 6.3E-12 1.4E-16 128.7 -9.2 160 138-304 232-413 (632)
18 KOG1419 Voltage-gated K+ chann 98.9 3.1E-09 6.8E-14 114.2 10.5 242 410-679 76-334 (654)
19 PF08016 PKD_channel: Polycyst 98.9 1.1E-08 2.4E-13 114.1 13.2 158 141-302 219-424 (425)
20 KOG3599 Ca2+-modulated nonsele 98.8 1.7E-07 3.6E-12 109.7 17.5 162 142-307 475-686 (798)
21 KOG3609 Receptor-activated Ca2 98.7 3.6E-07 7.8E-12 103.9 15.3 213 462-679 392-623 (822)
22 TIGR00870 trp transient-recept 98.4 1.4E-05 3E-10 96.0 20.6 69 238-308 554-623 (743)
23 KOG1419 Voltage-gated K+ chann 98.3 7E-06 1.5E-10 89.0 13.9 160 135-301 127-323 (654)
24 PLN03192 Voltage-dependent pot 98.0 0.00026 5.6E-09 85.9 20.2 74 423-499 63-151 (823)
25 KOG3609 Receptor-activated Ca2 97.7 0.0014 3E-08 75.4 17.0 169 139-307 387-618 (822)
26 KOG0510 Ankyrin repeat protein 97.5 0.0018 3.9E-08 73.9 14.4 170 480-674 588-764 (929)
27 KOG3676 Ca2+-permeable cation 97.5 0.006 1.3E-07 70.0 18.5 118 553-679 539-659 (782)
28 KOG3733 Mucolipidin and relate 97.3 0.0046 9.9E-08 65.5 13.8 128 528-675 385-515 (566)
29 KOG3614 Ca2+/Mg2+-permeable ca 97.1 0.0087 1.9E-07 72.0 15.8 240 410-676 779-1051(1381)
30 PLN03192 Voltage-dependent pot 97.1 0.017 3.6E-07 70.3 18.9 40 138-178 97-151 (823)
31 KOG0498 K+-channel ERG and rel 96.9 0.045 9.8E-07 63.8 18.1 130 423-556 79-232 (727)
32 KOG0510 Ankyrin repeat protein 96.6 0.11 2.5E-06 59.8 18.6 149 156-307 585-764 (929)
33 KOG3614 Ca2+/Mg2+-permeable ca 95.7 0.5 1.1E-05 57.6 18.5 41 269-309 1011-1051(1381)
34 KOG3533 Inositol 1,4,5-trispho 95.6 0.48 1E-05 57.0 17.2 145 534-678 2399-2580(2706)
35 KOG3733 Mucolipidin and relate 94.2 1.2 2.6E-05 47.9 14.2 63 239-305 442-512 (566)
36 PF13499 EF-hand_7: EF-hand do 92.4 0.12 2.5E-06 41.2 2.9 64 319-383 2-65 (66)
37 cd00213 S-100 S-100: S-100 dom 92.3 1.1 2.4E-05 37.9 9.0 75 315-389 6-82 (88)
38 KOG0498 K+-channel ERG and rel 92.3 3.9 8.5E-05 48.2 16.1 40 137-177 121-175 (727)
39 cd05022 S-100A13 S-100A13: S-1 92.1 0.58 1.3E-05 40.0 6.9 68 317-389 8-78 (89)
40 smart00027 EH Eps15 homology d 89.9 2.1 4.6E-05 36.9 8.5 67 316-389 9-75 (96)
41 PRK10537 voltage-gated potassi 89.7 5.1 0.00011 44.2 13.3 102 523-655 108-210 (393)
42 cd05027 S-100B S-100B: S-100B 89.7 1.5 3.3E-05 37.3 7.3 70 318-388 9-81 (88)
43 COG5126 FRQ1 Ca2+-binding prot 88.6 1.2 2.7E-05 42.2 6.5 65 315-384 90-154 (160)
44 cd00052 EH Eps15 homology doma 88.2 2.2 4.8E-05 33.5 7.0 63 320-389 2-64 (67)
45 KOG1420 Ca2+-activated K+ chan 88.1 0.4 8.6E-06 53.0 3.2 46 455-500 163-209 (1103)
46 cd05026 S-100Z S-100Z: S-100Z 88.0 2.7 5.9E-05 36.1 7.8 71 318-388 11-83 (93)
47 cd05025 S-100A1 S-100A1: S-100 87.8 4 8.7E-05 34.8 8.8 71 317-388 9-82 (92)
48 KOG3676 Ca2+-permeable cation 87.4 38 0.00082 40.0 18.5 63 240-306 588-653 (782)
49 cd05031 S-100A10_like S-100A10 86.5 3.9 8.4E-05 35.1 7.9 72 317-388 8-81 (94)
50 cd05023 S-100A11 S-100A11: S-1 84.7 4.9 0.00011 34.3 7.6 71 318-389 10-83 (89)
51 KOG0028 Ca2+-binding protein ( 84.0 5.5 0.00012 37.5 8.0 64 316-384 105-168 (172)
52 cd00051 EFh EF-hand, calcium b 82.7 4.6 9.9E-05 30.3 6.2 60 319-383 2-61 (63)
53 KOG0027 Calmodulin and related 81.8 5.4 0.00012 37.5 7.5 63 316-383 84-146 (151)
54 KOG0027 Calmodulin and related 81.2 6 0.00013 37.2 7.5 66 317-387 8-73 (151)
55 KOG1420 Ca2+-activated K+ chan 79.6 1.1 2.3E-05 49.8 1.9 43 138-180 167-210 (1103)
56 KOG2243 Ca2+ release channel ( 79.3 3 6.5E-05 50.5 5.4 139 527-679 4789-4934(5019)
57 PTZ00183 centrin; Provisional 79.1 7.1 0.00015 36.5 7.4 63 317-384 90-152 (158)
58 PRK10537 voltage-gated potassi 78.6 35 0.00075 37.7 13.4 42 239-284 165-206 (393)
59 PF14788 EF-hand_10: EF hand; 75.2 5.9 0.00013 29.9 4.2 35 353-387 16-50 (51)
60 KOG0501 K+-channel KCNQ [Inorg 74.6 7.7 0.00017 43.6 6.7 74 423-498 219-306 (971)
61 PTZ00184 calmodulin; Provision 73.8 11 0.00024 34.6 7.0 61 318-383 85-145 (149)
62 cd00252 SPARC_EC SPARC_EC; ext 73.3 16 0.00036 32.8 7.5 62 314-384 45-106 (116)
63 COG5126 FRQ1 Ca2+-binding prot 72.5 18 0.00038 34.5 7.8 67 316-388 19-85 (160)
64 PTZ00184 calmodulin; Provision 72.4 17 0.00037 33.3 8.0 64 317-385 11-74 (149)
65 cd05030 calgranulins Calgranul 71.7 29 0.00063 29.3 8.4 60 330-389 23-82 (88)
66 PTZ00183 centrin; Provisional 70.7 20 0.00043 33.4 8.0 64 317-385 17-80 (158)
67 KOG0044 Ca2+ sensor (EF-Hand s 68.4 15 0.00032 36.2 6.6 67 319-385 102-174 (193)
68 cd05029 S-100A6 S-100A6: S-100 68.2 27 0.00059 29.6 7.5 68 319-388 12-81 (88)
69 KOG0031 Myosin regulatory ligh 67.9 17 0.00036 34.2 6.3 66 316-386 31-129 (171)
70 cd05024 S-100A10 S-100A10: A s 67.0 29 0.00062 29.7 7.2 56 332-388 22-78 (91)
71 KOG0036 Predicted mitochondria 66.7 24 0.00052 38.4 8.1 63 316-383 81-143 (463)
72 KOG0500 Cyclic nucleotide-gate 66.3 86 0.0019 35.1 12.3 47 451-497 26-85 (536)
73 PF00036 EF-hand_1: EF hand; 65.7 5.1 0.00011 26.3 2.0 26 360-385 2-27 (29)
74 PF13833 EF-hand_8: EF-hand do 65.4 13 0.00028 27.9 4.5 49 331-384 2-51 (54)
75 KOG0499 Cyclic nucleotide-gate 64.8 49 0.0011 37.7 10.3 46 453-498 260-319 (815)
76 KOG0034 Ca2+/calmodulin-depend 60.2 19 0.00042 35.3 5.7 66 317-384 104-173 (187)
77 KOG0500 Cyclic nucleotide-gate 59.4 92 0.002 34.9 11.1 71 136-214 32-115 (536)
78 PF06512 Na_trans_assoc: Sodiu 58.2 2.1 4.6E-05 43.8 -1.4 24 409-432 216-239 (239)
79 KOG0499 Cyclic nucleotide-gate 55.5 3.7E+02 0.008 31.1 14.9 42 136-177 264-319 (815)
80 PF12763 EF-hand_4: Cytoskelet 53.0 42 0.00092 29.5 6.1 62 316-385 9-70 (104)
81 PF00036 EF-hand_1: EF hand; 50.5 19 0.00041 23.6 2.7 27 319-345 2-28 (29)
82 PF07885 Ion_trans_2: Ion chan 47.6 1.2E+02 0.0025 24.8 7.8 57 239-300 21-77 (79)
83 KOG0377 Protein serine/threoni 46.8 1.4E+02 0.0031 32.8 9.9 73 314-387 544-616 (631)
84 COG1377 FlhB Flagellar biosynt 46.1 2.6E+02 0.0056 30.4 11.8 20 694-713 239-258 (363)
85 KOG0036 Predicted mitochondria 45.7 74 0.0016 34.8 7.6 65 314-382 11-75 (463)
86 KOG0377 Protein serine/threoni 43.2 1.2E+02 0.0026 33.4 8.7 79 313-391 460-580 (631)
87 PRK12309 transaldolase/EF-hand 42.8 1.3E+02 0.0027 33.3 9.2 53 316-386 333-385 (391)
88 PF13405 EF-hand_6: EF-hand do 41.5 22 0.00049 23.3 2.0 26 360-385 2-27 (31)
89 PLN02964 phosphatidylserine de 41.1 79 0.0017 37.2 7.6 64 318-386 180-243 (644)
90 PF14658 EF-hand_9: EF-hand do 40.2 72 0.0016 25.6 5.0 58 322-383 3-61 (66)
91 PF13202 EF-hand_5: EF hand; P 39.3 31 0.00067 21.7 2.3 23 319-341 1-23 (25)
92 PF10669 Phage_Gp23: Protein g 38.7 86 0.0019 26.7 5.4 29 640-668 14-42 (121)
93 TIGR01404 FlhB_rel_III type II 36.8 3.8E+02 0.0082 29.1 11.6 19 644-662 180-198 (342)
94 PF01007 IRK: Inward rectifier 34.2 1.3E+02 0.0029 32.4 7.5 66 602-672 79-144 (336)
95 PRK12721 secretion system appa 33.6 6.6E+02 0.014 27.3 12.8 31 642-673 179-209 (349)
96 PF03303 WTF: WTF protein; In 29.8 3.7E+02 0.0081 27.1 9.0 24 147-170 144-174 (247)
97 PRK08156 type III secretion sy 28.8 6.3E+02 0.014 27.6 11.6 24 647-671 179-202 (361)
98 KOG3533 Inositol 1,4,5-trispho 28.4 1.1E+02 0.0025 38.2 6.1 33 275-307 2544-2576(2706)
99 PRK06298 type III secretion sy 27.2 4.1E+02 0.0089 28.9 9.9 32 642-674 180-211 (356)
100 COG5249 RER1 Golgi protein inv 26.5 1.5E+02 0.0032 27.4 5.2 25 652-676 65-89 (180)
101 KOG0046 Ca2+-binding actin-bun 26.3 1.9E+02 0.0041 32.7 7.0 67 316-385 18-84 (627)
102 PF11044 TMEMspv1-c74-12: Plec 25.9 1.3E+02 0.0028 21.9 3.7 27 648-674 7-33 (49)
103 KOG0501 K+-channel KCNQ [Inorg 25.4 1.1E+03 0.024 27.3 14.0 44 245-292 426-469 (971)
104 KOG0031 Myosin regulatory ligh 23.3 3.2E+02 0.0068 26.0 6.8 61 316-381 100-160 (171)
105 KOG0041 Predicted Ca2+-binding 20.4 5.3E+02 0.011 25.6 7.9 62 319-385 101-162 (244)
106 PF14089 KbaA: KinB-signalling 20.3 8E+02 0.017 23.9 9.7 44 135-185 44-89 (180)
107 PF10591 SPARC_Ca_bdg: Secrete 20.3 1.1E+02 0.0025 27.2 3.4 59 316-381 53-111 (113)
108 PRK13109 flhB flagellar biosyn 20.1 6.7E+02 0.014 27.4 9.8 25 646-671 192-216 (358)
No 1
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=4.1e-63 Score=594.40 Aligned_cols=449 Identities=25% Similarity=0.433 Sum_probs=384.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHhhhcCccccccchhhhhhhhHHHHHHhchHHH
Q 004951 138 YEGITLVILIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNIRQL 217 (722)
Q Consensus 138 ~e~~~~~if~~e~~~k~~~~g~~~y~~~~wn~~d~~i~v~s~i~~~~~~~~~~~~~~~~~~~r~~R~lR~lrli~~~~~l 217 (722)
.|.+|+.+|++|+++|+++.|...|++|.||++|++++++++|.++.... .....+.+|++|+|||+|.++..++|
T Consensus 877 ~D~~Ft~iFt~Em~lK~ia~Gf~~y~rn~w~~lDf~Vv~vslisl~~~~~----~~~~ik~lr~lRaLRPLR~i~r~~~m 952 (1592)
T KOG2301|consen 877 ADYIFTYIFTFEMLLKWIAYGFFFYFRNAWNWLDFVVVIVSLISLIASLK----ILSLIKSLRILRALRPLRALSRFPGM 952 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhHHhhhhHHHhhhHHHHHHHhhh----hhhHHHHHHHHHHHHHHHHHHHcccc
Confidence 59999999999999999999998899999999999999999999988765 22367899999999999999999999
Q ss_pred HHHHHHHHHHHHhHhhhc----------------------------------------------------------cccc
Q 004951 218 RDTLFVLAGMLGTYLNVL----------------------------------------------------------GNMV 239 (722)
Q Consensus 218 r~~~~~i~~~l~~~~~i~----------------------------------------------------------~~~~ 239 (722)
|.++..+++.++.++++. ...|
T Consensus 953 r~Vv~~l~~a~~~I~nv~lV~li~~fiFai~gv~lF~Gkf~~C~d~~~~~~~~~~~~y~~~~~~~~~~~~~~~w~n~~~n 1032 (1592)
T KOG2301|consen 953 RVVVLALFGGLPEIFNVLLVCLIFWFIFAIMGVQLFAGKFYACNDPTVGSRLTRTEVYNKYECESLPRAPRRWWNNRKFN 1032 (1592)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCceeccCCCcchhhhhhhhhccCchhhhhhccceEEeccccc
Confidence 999999999988887753 4568
Q ss_pred cccHHHHHHHHHHHHhcCCCCCcchh-----------hhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004951 240 FTSFGTTLYQMFVLFTTSNNPDVWIP-----------AYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQV 308 (722)
Q Consensus 240 F~~~~~s~~~lf~l~t~e~w~dvm~~-----------~~~~~~~~~ifFi~~i~i~~f~llnLfiaVi~~~f~~~~~~~~ 308 (722)
|||++++++++|+..|.+||+|+|+. .+..+.+.++||++|+++|.|+.+|+|+|||.+||+++.+++.
T Consensus 1033 fDnv~~a~laLf~v~tf~GW~~i~~~~ids~~~~~~p~~~~~~~~~~ffvifii~~~ff~lnlFvgvII~nf~~q~~~~~ 1112 (1592)
T KOG2301|consen 1033 FDNVGNAMLALFQVATFKGWPDIMYAAIDSRGVNAQPILESNLYMYLFFVIFIIIGSFFTLNLFVGVIIDNFNQQKGKAG 1112 (1592)
T ss_pred cccHHHHHHHHHHHHhcCCHHHHHHHHhhhhccCcCCcccccccceeehhhhhhHHhhhheeeeEEEEEechhhhchhhh
Confidence 99999999999999999999999864 4556778899999999999999999999999999999988876
Q ss_pred HHHHHHHHHHHHHHHhhhhccccccCCHHHHHHHHHHhhhhcCCCCCChHHHHHHhhhccCCCccccChhhHHhHHHHHH
Q 004951 309 SEMDRMRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIA 388 (722)
Q Consensus 309 ~~~~~~rr~~l~~af~~L~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~f~~l~~~~~ 388 (722)
.+ +.+.+|.... ...++.. +
T Consensus 1113 ~~----------------------~~~~eq~~~~-~~~~~l~-------------------------------------s 1132 (1592)
T KOG2301|consen 1113 GT----------------------FMTEEQKKRL-NAAKKLG-------------------------------------S 1132 (1592)
T ss_pred hh----------------------hhhHHHHHHH-HHHHHhc-------------------------------------C
Confidence 63 0111111100 0010000 0
Q ss_pred hhhcccCCccccccCCCCcCchHHHHHHHccccchHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHH
Q 004951 389 LRFQKEDVPSCFENLPSIYHSPFSEKLKAFIRSTKFGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYV 468 (722)
Q Consensus 389 ~~~~k~~~~~~~~~~p~~~~~~~r~~~~~iv~~~~f~~~i~~iilln~i~l~~~~~~~~~~~~~~~~~~~~e~~f~~iF~ 468 (722)
++.+| +.| .+.++.+.+++.++.++.|++.+..++++|++.++++++. ++......+.+++.+|+.+|+
T Consensus 1133 k~~~r-~ip--------r~~~~~q~~~~~~v~~~~F~~~i~~li~ln~i~l~~~~~~--qs~~~~~~l~~in~vft~~Ft 1201 (1592)
T KOG2301|consen 1133 KPPQR-PIP--------RPRNKLQGLVFDLVTSQAFDYLIMLLIFLNTIIMMVETYD--QSDTYTAILTILNAVFIVLFT 1201 (1592)
T ss_pred CCCCC-CCC--------CCcchhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcc--chHHHHHHHHHHHHHHHHHHH
Confidence 01111 111 2245688999999999999999999999999999999863 445667788999999999999
Q ss_pred HHHHHHHhhhcchhhhhccccchhHHHHHHHHHHHHHhhcCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 004951 469 LEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVA 548 (722)
Q Consensus 469 ~E~~lKi~a~g~~~y~~~~wn~fD~~vvi~~~i~~i~~~~~~~~~~~~~~~~~lr~l~~~R~lR~lrl~~~~~~lr~l~~ 548 (722)
+|+++|++|+|++.||+++||.||++++++++++.+++..... +.++....++.|++|+.|++|+++..+++|.+..
T Consensus 1202 ~E~vLKiiA~~~~~yf~~~WN~FDfvvvIlSIv~~~ls~~~~~---~~~~~~~~~~~rl~rV~R~l~Li~~~~~ir~LL~ 1278 (1592)
T KOG2301|consen 1202 IECILKVIALRFRGYFTSAWNVFDFVVTILSIVGIVLSEAVEK---YESSPTLLRFLRLFRVGRFLRLIPQAKTIRTLLL 1278 (1592)
T ss_pred HHHHHHHHHhhhhHhccccchheEeeeeeHhHHHHHHHHHHHh---hccchhhHHHHHHHHHHHHHHhccccchhHHHHH
Confidence 9999999999999999999999999999999999988766543 1234556799999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhccccccCCCCCCCCccccccccccccCChhhHHHHHHHHHhhcCHHHHH
Q 004951 549 TFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWM 628 (722)
Q Consensus 549 tl~~~~~~l~~~~~ll~~~~~ifAiiG~~lF~g~~~~~n~~~~~~~~~~~~y~~~nF~~f~~s~~tLf~i~t~e~W~~im 628 (722)
|++.|+|++.++++++++++++||++||++||....+ ++++ ++||.+|++|++.||+++|+|||+++|
T Consensus 1279 t~~~Sl~al~~i~lLl~ll~fiYAi~Gmq~Fg~Vkl~--------~i~~----~~NF~tf~~a~i~LFr~~Tge~W~~im 1346 (1592)
T KOG2301|consen 1279 TLMMSLPALFFIILLLFLLFFIYAIIGMQLFGYVKLG--------GIND----HNNFRTFPNSMVVLFRCATGEGWNDIM 1346 (1592)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhheecc--------ccCC----CcccccchhheeeeeehhhhhhHHHHH
Confidence 9999999999999999999999999999999999865 1112 589999999999999999999999999
Q ss_pred HHHHh--------------hhC-CceeeeehhhHhHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 004951 629 QSYKE--------------LTG-TAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESS 676 (722)
Q Consensus 629 ~~~~~--------------~~g-~~~~~iyFv~f~~i~~~i~lnLfvavi~e~F~~~~~~~~~ 676 (722)
.+++. .|| ..++.+||++|+++++++++|||||||+|||+..++..++
T Consensus 1347 ~~~l~s~p~Cdp~~~~~~~dCGn~~~Ai~YF~Sf~iIs~~IvvNLfVAVImeNFs~~t~~~s~ 1409 (1592)
T KOG2301|consen 1347 DDCLNSKPFCDPDDGNNGTDCGNPTVAIIYFVSWILISSYIVVNLFVAVILENFSYATEDSSE 1409 (1592)
T ss_pred HHHhcCCCCCCCCCCCcccccCCCCcceehhhHHHHHHHHHHHHHHHHHHHhhhhhhcccccc
Confidence 99875 367 6889999999999999999999999999999999888774
No 2
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2.7e-60 Score=518.15 Aligned_cols=459 Identities=22% Similarity=0.337 Sum_probs=377.6
Q ss_pred HHHHHHHHHHHHHHHHHhccc----ccccccccccchhhHHHHHHHHHHHHhhhcCccccc---cchhhhhhhhHHHHHH
Q 004951 139 EGITLVILIIHTFFPITYEGS----PIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFN---FLPLRIAPYIRVVFFI 211 (722)
Q Consensus 139 e~~~~~if~~e~~~k~~~~g~----~~y~~~~wn~~d~~i~v~s~i~~~~~~~~~~~~~~~---~~~~r~~R~lR~lrli 211 (722)
.++|+.+|.+|+.+|+++.|+ .+|+++.||.+|.+++.+++||++++....+ +... ++++|.+|.|||+|.+
T Consensus 1162 nyIFtaIfV~Em~lKVVALGl~fge~aYl~ssWN~LDgflv~vsviDilvs~asa~-g~kILgVlrvLRlLRtlRpLRvi 1240 (1956)
T KOG2302|consen 1162 NYIFTAIFVVEMTLKVVALGLYFGEQAYLRSSWNVLDGFLVAVSVIDILVSQASAG-GAKILGVLRVLRLLRTLRPLRVI 1240 (1956)
T ss_pred chHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHhhHHHHH
Confidence 699999999999999997764 7899999999999999999999999877432 1222 4566777888899999
Q ss_pred hchHHHHHHHHHHHHHHHhHhhhc------------------------------------------------cccccccH
Q 004951 212 LNIRQLRDTLFVLAGMLGTYLNVL------------------------------------------------GNMVFTSF 243 (722)
Q Consensus 212 ~~~~~lr~~~~~i~~~l~~~~~i~------------------------------------------------~~~~F~~~ 243 (722)
++.++++.+..++..+|+.+.++. ..+||||.
T Consensus 1241 Sra~glklVveTL~sSLkpIgnIvliccaffiiFgilgvqLFkgkfy~c~g~dtrnitnKSdc~aa~yRwvrhkyNfdnl 1320 (1956)
T KOG2302|consen 1241 SRAPGLKLVVETLISSLKPIGNIVLICCAFFIIFGILGVQLFKGKFYHCLGVDTRNITNKSDCMAAPYRWVRHKYNFDNL 1320 (1956)
T ss_pred hhcccHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHhcccceeccccccccccchhhhcccchhhhhhhcccchH
Confidence 988888887776666666554432 36799999
Q ss_pred HHHHHHHHHHHhcCCCCCcch-----------hhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004951 244 GTTLYQMFVLFTTSNNPDVWI-----------PAYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQVSEMD 312 (722)
Q Consensus 244 ~~s~~~lf~l~t~e~w~dvm~-----------~~~~~~~~~~ifFi~~i~i~~f~llnLfiaVi~~~f~~~~~~~~~~~~ 312 (722)
+.|+++||++.|-+||.++|| |..+.++|..+|||+|.+|..|+++|||++|+++||.+.++++.+++.
T Consensus 1321 gqalmSLFvLaSkDgWv~ImyDgldavavdqqPI~nhnpwmllYfIsfllIvsffVlnmfVgvvvenfhKcrqhqe~EeA 1400 (1956)
T KOG2302|consen 1321 GQALMSLFVLASKDGWVNIMYDGLDAVAVDQQPILNHNPWMLLYFISFLLIVSFFVLNMFVGVVVENFHKCRQHQEAEEA 1400 (1956)
T ss_pred HHHHHHHHHHhcccchhhhhccchhhceeeeeccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999986 667899999999999999999999999999999999988877766655
Q ss_pred HHHHHHHHHHHhhhhccccccCCHHHHHHHHHHhhhhcCCCCCChHHHHHHhhhccCCCccccChhhHHhHHHHHHhhhc
Q 004951 313 RMRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIALRFQ 392 (722)
Q Consensus 313 ~~rr~~l~~af~~L~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~f~~l~~~~~~~~~ 392 (722)
.+|+++. ++.+.+ +.+
T Consensus 1401 rRreEKr-----------------------Lrrlek-----------------------------------------krR 1416 (1956)
T KOG2302|consen 1401 RRREEKR-----------------------LRRLEK-----------------------------------------KRR 1416 (1956)
T ss_pred HHHHHHH-----------------------HHHHHH-----------------------------------------HHH
Confidence 4443321 111111 111
Q ss_pred ccCCccccccCCCCcCchHHHHHHHccccchHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHH
Q 004951 393 KEDVPSCFENLPSIYHSPFSEKLKAFIRSTKFGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEMA 472 (722)
Q Consensus 393 k~~~~~~~~~~p~~~~~~~r~~~~~iv~~~~f~~~i~~iilln~i~l~~~~~~~~~~~~~~~~~~~~e~~f~~iF~~E~~ 472 (722)
+..+.++... -+..|+.++....+.+-+.+++++|.+|++++..+.+ .++....+.+.+.++.|+++|+.|++
T Consensus 1417 ~Aq~kpyyse-----yt~~rrlIh~~ctShyld~fit~ii~LnvVtms~ehy--qqp~sldealkycny~ft~vfV~EaV 1489 (1956)
T KOG2302|consen 1417 AAQRKPYYSE-----YTMTRRLIHSKCTSHYLDQFITFIICLNVVTMSEEHY--QQPTSLDEALKYCNYRFTAVFVLEAV 1489 (1956)
T ss_pred hccCCccccc-----ccHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH--hCcccHHHHhhhcceeeeehhHHHHH
Confidence 1111111111 1467899999999999999999999999999999876 45566778999999999999999999
Q ss_pred HHHhhhcchhhhhccccchhHHHHHHHHHHHHHhhcCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 004951 473 LKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLT 552 (722)
Q Consensus 473 lKi~a~g~~~y~~~~wn~fD~~vvi~~~i~~i~~~~~~~~~~~~~~~~~lr~l~~~R~lR~lrl~~~~~~lr~l~~tl~~ 552 (722)
+|.++.|.++||++.||.+|+.+++.++.+..+.-+-.+ .+.-.+..++|++|++|+.|++|+++...++|.++.|+.+
T Consensus 1490 ~klvafG~rrFfkdrwnqldlaivlls~mgitleeie~n-aalpinptiirimrvlriarvlkllkmatgmralldtvvq 1568 (1956)
T KOG2302|consen 1490 LKLVAFGERRFFKDRWNQLDLAIVLLSVMGITLEEIEIN-AALPINPTIIRIMRVLRIARVLKLLKMATGMRALLDTVVQ 1568 (1956)
T ss_pred HHHHHHhHHHHHhhhhhhhhHHHHHHHHhcccHhheeec-ccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988776543322 1223578899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHhccccccCCCCCCCCccccccccccccCChhhHHHHHHHHHhhcCHHHHHHHHH
Q 004951 553 LIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYK 632 (722)
Q Consensus 553 ~~~~l~~~~~ll~~~~~ifAiiG~~lF~g~~~~~n~~~~~~~~~~~~y~~~nF~~f~~s~~tLf~i~t~e~W~~im~~~~ 632 (722)
++|.+.++.++.++++|+||.+|+++||... ||.+-++.+... +..|.||+.||+|||++.||+||+.||.|..
T Consensus 1569 alpqvgnlgllfmllffiyaalgvelfg~le--c~e~npceglsr----hatf~nfgmafltlfrvstgdnwngimkdtl 1642 (1956)
T KOG2302|consen 1569 ALPQVGNLGLLFMLLFFIYAALGVELFGKLE--CNEENPCEGLSR----HATFENFGMAFLTLFRVSTGDNWNGIMKDTL 1642 (1956)
T ss_pred hcccccchhHHHHHHHHHHHHHHHHHhcccc--cCCCCCcccccc----ccchhhhchHhhhheeeccCCcccchhhhhH
Confidence 9999999999999999999999999999874 554444444433 4789999999999999999999999999987
Q ss_pred hhhC-------CceeeeehhhHhHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 004951 633 ELTG-------TAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESS 676 (722)
Q Consensus 633 ~~~g-------~~~~~iyFv~f~~i~~~i~lnLfvavi~e~F~~~~~~~~~ 676 (722)
..|. ...+.+|||+|.+...++++|++|||++....+.-++.++
T Consensus 1643 rdc~~e~~cls~~~sp~yfvsfvltaqfvlvnvvvavlmkhleesnkea~e 1693 (1956)
T KOG2302|consen 1643 RDCTHEESCLSQFVSPLYFVSFVLTAQFVLVNVVVAVLMKHLEESNKEAQE 1693 (1956)
T ss_pred hhcccchhhhhhhccchhhhhhhhhhhhHHHHHHHHHHHHHHHhhchhhhh
Confidence 7664 3568999999999999999999999999887776444433
No 3
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-55 Score=529.95 Aligned_cols=484 Identities=22% Similarity=0.343 Sum_probs=369.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcc----cccccccccccchhhHHHHHHHHHHHHhhhcCccccccchhhhhhhhHHHHHHhc
Q 004951 138 YEGITLVILIIHTFFPITYEG----SPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILN 213 (722)
Q Consensus 138 ~e~~~~~if~~e~~~k~~~~g----~~~y~~~~wn~~d~~i~v~s~i~~~~~~~~~~~~~~~~~~~r~~R~lR~lrli~~ 213 (722)
.|+.++.+|+.|.++|+.+.| ...|.||+||++|++++++.++..++... .++.+|.+|++|++|++..
T Consensus 105 ~e~~f~~i~~~E~~~ki~a~G~~~~~~sylr~~wn~ldf~vvv~~~~s~~~~~~-------~~~~lR~frvlr~lk~vs~ 177 (1592)
T KOG2301|consen 105 AEYTFLGIFTFESVVKILARGFFRCDFSYLRDPWNWLDFVVIVIGLLSTLLHLY-------NIRALRTFRVLRALKLVSG 177 (1592)
T ss_pred cceehhhHHHHHHHHHHHHHHhhcCCCcccCCccccccEEEeeeehHHHhcccc-------chhhhccccccchhhhccC
Confidence 399999999999999998655 57799999999999999999888776644 4788999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhHhhhc----------------------------------------------------------
Q 004951 214 IRQLRDTLFVLAGMLGTYLNVL---------------------------------------------------------- 235 (722)
Q Consensus 214 ~~~lr~~~~~i~~~l~~~~~i~---------------------------------------------------------- 235 (722)
.+.++..+.++.+....+..+.
T Consensus 178 ~~~lk~~~~~ii~~~~~l~~~~~l~~f~~~ifa~igl~lf~g~l~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~ 257 (1592)
T KOG2301|consen 178 IPGLKTRVGALIKASKQLVDVVILTFFFLSVFALIGLQLFMGRLTYKCVQPKPNNVTINDRAIPDTYCAPEGIGGLLCGN 257 (1592)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHhhhcCCCCCceeccccCcccccCcCCCCccccCC
Confidence 8888776665443322211100
Q ss_pred -------------cccccccHHHHHHHHHHHHhcCCCCCcchhhhcc-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004951 236 -------------GNMVFTSFGTTLYQMFVLFTTSNNPDVWIPAYKA-SRWYCLFFVLYVLIGVYFVTNLILAVVYDSFK 301 (722)
Q Consensus 236 -------------~~~~F~~~~~s~~~lf~l~t~e~w~dvm~~~~~~-~~~~~ifFi~~i~i~~f~llnLfiaVi~~~f~ 301 (722)
|.++|||++.|++++|+++|+|||+|++++..+. +.|+++||+.++++|+|+++|+++||+..+|+
T Consensus 258 ~~~C~~~~~~p~~g~t~Fd~f~~a~lt~f~~~tqe~w~~~~y~~~~a~g~~~~~~Fv~~i~lgsf~~~nl~l~vls~~f~ 337 (1592)
T KOG2301|consen 258 NYVCMQLGANPNGGYTSFDSFGWAFLTVFRLMTQEGWEDLLYLTLDALGKWYMLFFVTLIFLGSFYVKNLFLAVLSMAFA 337 (1592)
T ss_pred ccchhhcCCCCCCCcccchHHHHHHHHHHHHHhhcchHHHHHHHHHhcccceeEeeehhhhhccHHHHHHHHHHhhHHHH
Confidence 5678999999999999999999999999987743 47999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCHHHHHHHHHHhhhhcCCCCCChHHHHHHhhhccCCCccccChhhHH
Q 004951 302 SQLAKQVSEMDRMRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFA 381 (722)
Q Consensus 302 ~~~~~~~~~~~~~rr~~l~~af~~L~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~f~ 381 (722)
|+.++..++.++++.+.. ++.+.+.++..++....+.... . ...++......+... +..
T Consensus 338 e~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~--------------~~~ 396 (1592)
T KOG2301|consen 338 EERVAFEEEWQFKEPRFQ-EAFEELLEKYEDGIFLAEADGS---V---ESGPKSKLFSVDSLE--------------DVN 396 (1592)
T ss_pred HHHHHHHhhhhhhchHHH-HHHHHHHHHHHHHHHHHHHhhh---h---ccccchhhhhhhhhh--------------hhh
Confidence 988776665544433222 2222222221111111111100 0 000000000000000 000
Q ss_pred hHHHHHHhhhcccCCccccccC--------CCCcCchHHHHHHHccccchHHHHHHHHHHHHHHHHHhhcccccccchhh
Q 004951 382 DLCNAIALRFQKEDVPSCFENL--------PSIYHSPFSEKLKAFIRSTKFGYMISIILIVNLVAVIVETTLDIQESSLQ 453 (722)
Q Consensus 382 ~l~~~~~~~~~k~~~~~~~~~~--------p~~~~~~~r~~~~~iv~~~~f~~~i~~iilln~i~l~~~~~~~~~~~~~~ 453 (722)
...+...... +.++.++.+. ...++.++++.|+.++.++.+.+++.+++++|+++++.+++. +.....
T Consensus 397 ~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~~~~~~~i~i~i~lnt~~~a~eh~~--~~~~~~ 472 (1592)
T KOG2301|consen 397 SRVELLSAVS--YKCPLAWYKSAKNFLIWFCCPIWLKFKQWLRKMVFDPFVILFITICIALNTLFMAMEHYE--MTKARN 472 (1592)
T ss_pred hhhhhhhhhc--ccCchHhHhhccceeeeccchHHHHHHHHHHHhhhcceehhhhHHHHhhcccEEEEEEeC--CcHHHH
Confidence 0000000000 2222222222 223456788999999999999999999999999999988764 344556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhccccchhHHHHHHHHHHHHHhhcCCCCccccchhhHHHHHHHHHHHHH
Q 004951 454 SVWQEVEFVFGWIYVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRL 533 (722)
Q Consensus 454 ~~~~~~e~~f~~iF~~E~~lKi~a~g~~~y~~~~wn~fD~~vvi~~~i~~i~~~~~~~~~~~~~~~~~lr~l~~~R~lR~ 533 (722)
..+.+.+.+|+++|++|+.+|++++|++.||++.||+||.++++..++... ..+...+.++|.+|++|+
T Consensus 473 ~~l~~~~~vF~~lF~~Em~~ki~al~~~~yF~~~~n~fD~~iv~l~~~~~~-----------~~~~~g~svLr~frllRI 541 (1592)
T KOG2301|consen 473 YLLYLGNVVFTGLFTVEMILKIYALGPRNYFRRGWNIFDLIIVLLSLLELL-----------LKNVYGLSVLRSFRLLRI 541 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHhhhcchheEEEEehhhHHhc-----------ccchHHHHHHHHHHHHHH
Confidence 788899999999999999999999999999999999999998884444332 123456789999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhccccccCCCCCCCCccccccccccccCChhhHHH
Q 004951 534 IRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMV 613 (722)
Q Consensus 534 lrl~~~~~~lr~l~~tl~~~~~~l~~~~~ll~~~~~ifAiiG~~lF~g~~~~~n~~~~~~~~~~~~y~~~nF~~f~~s~~ 613 (722)
+|+.+.++.++.++..+.+++.++++++++++++.++||++|||+|||....| ... ..||+||++|++
T Consensus 542 fkl~k~wp~l~~lv~~i~ns~~~l~~L~l~l~i~i~Ifa~~gmqlFg~~~n~~-~~~-----------~~~~~~fp~sfl 609 (1592)
T KOG2301|consen 542 FKLIKSWPTLNDLVKSIFNSGKALGNLVLFLFIFIFIFAAIGMQLFGGVYNLH-CDI-----------HWHFTDFPHSFL 609 (1592)
T ss_pred HHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhhHHhhCcccCCC-CCC-----------ccchhhCHHHHH
Confidence 99999999999999999999999999999999999999999999999997664 211 169999999999
Q ss_pred HHHHHHhhcCHHHHHHHHHhhhCCceeeeehhhHhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh
Q 004951 614 TLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEK 678 (722)
Q Consensus 614 tLf~i~t~e~W~~im~~~~~~~g~~~~~iyFv~f~~i~~~i~lnLfvavi~e~F~~~~~~~~~~~ 678 (722)
++|| .|+|+|+++|++++...|.++..+||+.+++++++++||+|+|++++||...- ..+.++
T Consensus 610 ~vFq-lt~e~W~evm~~~~~~~~~~~~~i~Fi~~~l~gn~vvLnlFlAl~~~n~~~~e-l~~~e~ 672 (1592)
T KOG2301|consen 610 SVFQ-ITCEEWTDVMWDCMEAAGQPLCAIYFIAYFLFGNLVVLNLFLALILDNFESDE-LKKPEQ 672 (1592)
T ss_pred HHHH-HcCCchHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhh-cCChhh
Confidence 9999 88999999999999999889999999999999999999999999999999876 444444
No 4
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2.4e-53 Score=463.95 Aligned_cols=560 Identities=20% Similarity=0.308 Sum_probs=390.6
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHhhhcCccccccchhhhhhhhHHHHHHhchHHHH
Q 004951 139 EGITLVILIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNIRQLR 218 (722)
Q Consensus 139 e~~~~~if~~e~~~k~~~~g~~~y~~~~wn~~d~~i~v~s~i~~~~~~~~~~~~~~~~~~~r~~R~lR~lrli~~~~~lr 218 (722)
..+|+-.|..|+.+|....|+-.|.+||.|++|.++++++.-+++.. ....+.++|-+|.+|++++++.++.+|
T Consensus 657 n~vftsmfalEm~lkla~~g~f~y~rnPynifdgiiv~is~wEiVgq------q~GglsvlrtFrllrvlkLvrf~palq 730 (1956)
T KOG2302|consen 657 NNVFTSMFALEMDLKLAARGFFRYHRNPYNIFDGIIVAISHWEIVGQ------QDGGLSVLRTFRLLRVLKLVRFSPALQ 730 (1956)
T ss_pred hhhhHHHHHHHHHHhhhhccchhccCCCcccCCCeEEEEEeeEeecc------cCCCcCCCcHHHHHHHHHHHhhhHHHH
Confidence 67899999999999999999999999999999999999998776422 223678889999999999999988887
Q ss_pred HHHHHHH-------------HHHHhHhhhc--------------------cccccccHHHHHHHHHHHHhcCCCCCcchh
Q 004951 219 DTLFVLA-------------GMLGTYLNVL--------------------GNMVFTSFGTTLYQMFVLFTTSNNPDVWIP 265 (722)
Q Consensus 219 ~~~~~i~-------------~~l~~~~~i~--------------------~~~~F~~~~~s~~~lf~l~t~e~w~dvm~~ 265 (722)
+-...+. +..+.++.+. ...+||++.++..|.|+++|.|+|+.++++
T Consensus 731 rqlvvl~ktmdnvAtfctllmLfififsIlgmh~fGckfs~e~dtGdt~pDrknfdsllwaivTvfqilTqedwn~vLyn 810 (1956)
T KOG2302|consen 731 RQLVVLMKTMDNVATFCTLLMLFIFIFSILGMHSFGCKFSLETDTGDTVPDRKNFDSLLWAIVTVFQILTQEDWNVVLYN 810 (1956)
T ss_pred HHHHHHHHhccchhhhhhHHHHHHHHHhhhhhhhhccccccccccCCcCCCccccchHHHHHHHHHhhhcccccchhhhc
Confidence 6554333 3333333332 456899999999999999999999999988
Q ss_pred hh-ccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH-HHHHHHHHHHhhhh----cccc------
Q 004951 266 AY-KASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQVSEM--DR-MRRRTLGKAFNLID----NYNV------ 331 (722)
Q Consensus 266 ~~-~~~~~~~ifFi~~i~i~~f~llnLfiaVi~~~f~~~~~~~~~~~--~~-~rr~~l~~af~~L~----~~~~------ 331 (722)
-+ +++.|+++||+...-.|+|++.||.+|+..+.|+.......... ++ +..+...+.|+.+. .+.+
T Consensus 811 gmastSswa~lyfvAlmtfGnYvlfnllvailvEgFqaee~s~rs~~qhDe~q~~~~~~e~fdkl~e~ld~d~k~cp~~~ 890 (1956)
T KOG2302|consen 811 GMASTSSWAPLYFVALMTFGNYVLFNLLVAILVEGFQAEEDSNRSGLQHDEDQHSQNPEEGFDKLQEGLDSDPKLCPHHH 890 (1956)
T ss_pred CccccCCcchhHHHHhhhccceeeeccchhhhhhhcccccccccccccccccccccCccccchhhcccccCccccCcccc
Confidence 77 67899999999999999999999999999999973321111100 00 00000011111111 0000
Q ss_pred -------------------------------------------------ccCCHHH-------------------HHH--
Q 004951 332 -------------------------------------------------GFLNKEQ-------------------CIK-- 341 (722)
Q Consensus 332 -------------------------------------------------~~l~~~~-------------------~~~-- 341 (722)
++-..+| |..
T Consensus 891 t~~~H~~~r~sl~~hl~~~~aasP~~~~t~sp~~~~~~~~sR~~S~~~s~~~~~d~~~~pS~rss~~~Pw~~s~awtsRr 970 (1956)
T KOG2302|consen 891 TPNGHLRSRLSLGHHLAHQHAASPHPGETISPDSSVGSYQSRGISDYSSEYHSYDQDSHPSERSSGDHPWGTSYAWTSRR 970 (1956)
T ss_pred CCCCCcccccCCCCccccccCCCCCCCCCcCCCcccccccccccccccCCCccccCCCCchhccCCCCCCccchhhhhcc
Confidence 0000000 000
Q ss_pred --HHHHhhhhcCCCCCChHHHHH---------------------------------------------------------
Q 004951 342 --LFEELNKYRTLPNISREEFEL--------------------------------------------------------- 362 (722)
Q Consensus 342 --~~~~l~~~~~~~~~~~~~~~~--------------------------------------------------------- 362 (722)
.-+.+|. . +.+.+....
T Consensus 971 ss~~qslkh---~-~~~ge~~SlLsgeygq~ts~~~~~~~~~raAPGpraa~~r~~~s~~~ahPr~~~~aa~Rsas~~rd 1046 (1956)
T KOG2302|consen 971 SSWNQSLKH---Q-DPSGEYESLLSGEYGQSTSQLSAPHGSRRAAPGPRAASRRRVFSLDVAHPRGSAHAAGRSASTHRD 1046 (1956)
T ss_pred cchhhhccc---C-CCcchhhhhhccccccccccccCCCCCccCCCCCccccccccccccccCCCcccccccCCCccccc
Confidence 0000000 0 000000000
Q ss_pred -----------Hhhh-ccCCCccccChhh-HHhHHHHHHhhhcccCCcc------ccccCCCCcCchHHHHHHHccccch
Q 004951 363 -----------IFDE-LDDTHDFKINLDE-FADLCNAIALRFQKEDVPS------CFENLPSIYHSPFSEKLKAFIRSTK 423 (722)
Q Consensus 363 -----------~~~~-ld~~~~~~~~~~~-f~~l~~~~~~~~~k~~~~~------~~~~~p~~~~~~~r~~~~~iv~~~~ 423 (722)
.+.. .++..+....+|| ....|....+ +.....|. .|+++--..++++|..|+++++|+.
T Consensus 1047 cngrv~s~~k~v~t~~~s~r~d~d~~~eEg~~~k~~r~r~-~i~~~kp~~c~~r~~Ws~ylF~pQ~rFR~lc~~ii~hk~ 1125 (1956)
T KOG2302|consen 1047 CNGRVTSMSKDVFTQDISTRHDEDEGKEEGQFQKCKRVRK-QITRYKPHWCNLRELWSKYLFSPQNRFRVLCQNIIQHKA 1125 (1956)
T ss_pred cCCccchhhhhhhccCCCCccccccchhcchhHHHHhhhh-hhcccCCcchhHHHHHHHHhcCcccHHHHHHHHHHHHhh
Confidence 0000 0000111111111 0111111111 11111122 2233322346889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccchhhHHH-HHHHHHHHHHHHHHHHHHHhhhcc----hhhhhccccchhHHHHHH
Q 004951 424 FGYMISIILIVNLVAVIVETTLDIQESSLQSVW-QEVEFVFGWIYVLEMALKIYSYGF----ENYWRDGQNRFDFLVTWV 498 (722)
Q Consensus 424 f~~~i~~iilln~i~l~~~~~~~~~~~~~~~~~-~~~e~~f~~iF~~E~~lKi~a~g~----~~y~~~~wn~fD~~vvi~ 498 (722)
|+.++.++|++||+.++++++... +.+.+.++ ..-+++|++||++|+.+|++|+|+ .+|+++.||.+|++++.+
T Consensus 1126 Fd~vVl~~IfLNcVtialerp~i~-~~s~EriFltlsnyIFtaIfV~Em~lKVVALGl~fge~aYl~ssWN~LDgflv~v 1204 (1956)
T KOG2302|consen 1126 FDTVVLFFIFLNCVTIALERPAIV-EGSTERIFLTLSNYIFTAIFVVEMTLKVVALGLYFGEQAYLRSSWNVLDGFLVAV 1204 (1956)
T ss_pred hhheehhhhhhhhHHHHhcccccc-cCcceEEEEEecchHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHhhhHHHHHH
Confidence 999999999999999999987433 33334333 445699999999999999999996 799999999999999999
Q ss_pred HHHHHHHhhcCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 004951 499 IVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQI 578 (722)
Q Consensus 499 ~~i~~i~~~~~~~~~~~~~~~~~lr~l~~~R~lR~lrl~~~~~~lr~l~~tl~~~~~~l~~~~~ll~~~~~ifAiiG~~l 578 (722)
++++.++.....++. .-..++|++|++|.+|++|.+.+.++++.++.|++.+++.+.+++++.+.++++|+++|++|
T Consensus 1205 sviDilvs~asa~g~---kILgVlrvLRlLRtlRpLRviSra~glklVveTL~sSLkpIgnIvliccaffiiFgilgvqL 1281 (1956)
T KOG2302|consen 1205 SVIDILVSQASAGGA---KILGVLRVLRLLRTLRPLRVISRAPGLKLVVETLISSLKPIGNIVLICCAFFIIFGILGVQL 1281 (1956)
T ss_pred HHHHHHHHHhhhhhH---HHHHHHHHHHHHHHhhHHHHHhhcccHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998876655432 23567888899999999999999999999999999999999999999999999999999999
Q ss_pred hccccccCCCCCC-----CCcccccccc----ccccCChhhHHHHHHHHHhhcCHHHHHHHHHhhhC---------Ccee
Q 004951 579 FGGIVNAGNAKLE-----ETDLADDDYL----LFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTG---------TAWT 640 (722)
Q Consensus 579 F~g~~~~~n~~~~-----~~~~~~~~y~----~~nF~~f~~s~~tLf~i~t~e~W~~im~~~~~~~g---------~~~~ 640 (722)
|.|+.+.|...+. ..++....|. ..||||.++|+++||.+.|-+||..||+|..+..+ ++|.
T Consensus 1282 Fkgkfy~c~g~dtrnitnKSdc~aa~yRwvrhkyNfdnlgqalmSLFvLaSkDgWv~ImyDgldavavdqqPI~nhnpwm 1361 (1956)
T KOG2302|consen 1282 FKGKFYHCLGVDTRNITNKSDCMAAPYRWVRHKYNFDNLGQALMSLFVLASKDGWVNIMYDGLDAVAVDQQPILNHNPWM 1361 (1956)
T ss_pred hcccceeccccccccccchhhhcccchhhhhhhcccchHHHHHHHHHHHhcccchhhhhccchhhceeeeeccccCCcHH
Confidence 9999998853321 2334445554 48999999999999999999999999998766543 6999
Q ss_pred eeehhhHhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc-cCChhhhhhhhhhh----hhhhhHHHHHHHHhh
Q 004951 641 LAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEKCEEEDK-DGEPRERRRRVGTK----TRSQKVDVLLHHMLS 713 (722)
Q Consensus 641 ~iyFv~f~~i~~~i~lnLfvavi~e~F~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~k----~r~~~~~~l~~~~~~ 713 (722)
.+|||+|.+|..++++|+||++++|||.+..+..+++.....++ +.+..+++++...+ ..+.+.+.|.|+++-
T Consensus 1362 llYfIsfllIvsffVlnmfVgvvvenfhKcrqhqe~EeArRreEKrLrrlekkrR~Aq~kpyyseyt~~rrlIh~~ct 1439 (1956)
T KOG2302|consen 1362 LLYFISFLLIVSFFVLNMFVGVVVENFHKCRQHQEAEEARRREEKRLRRLEKKRRAAQRKPYYSEYTMTRRLIHSKCT 1439 (1956)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccccHHHHHHHHHhh
Confidence 99999999999999999999999999999888777766533322 22222232222222 344556666666553
No 5
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.87 E-value=3.5e-22 Score=198.17 Aligned_cols=198 Identities=28% Similarity=0.515 Sum_probs=161.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc--hhhhhccccchhHHHHHHHHHHHHHhhcCCCCccccchhhHHHHHHHHHHHHHHH
Q 004951 458 EVEFVFGWIYVLEMALKIYSYGF--ENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIR 535 (722)
Q Consensus 458 ~~e~~f~~iF~~E~~lKi~a~g~--~~y~~~~wn~fD~~vvi~~~i~~i~~~~~~~~~~~~~~~~~lr~l~~~R~lR~lr 535 (722)
++|.++.++|++|.++|+++.|+ ++|++++||++|+++++..++..+........ .....++.+++|.+|++|
T Consensus 1 ~~~~~~~~~f~~e~~l~~~~~~~~~~~y~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~R~l~ 75 (200)
T PF00520_consen 1 ILEIIFDVIFILEIVLRFFALGFKRRRYFRSWWNWFDFISVIPSIVSVILRSYGSAS-----AQSLLRIFRLLRLLRLLR 75 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCG-GCCCCSHHHHHHHHHHHHHCCHHCCHCSS--H-----HCHCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHhccHHHHHhcChhhccccccccccccccccccccccc-----ccceEEEEEeeccccccc
Confidence 57899999999999999999998 89999999999999988876655543222110 013468889999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhccccccCCCCCCCCccccccccccccCChhhHHHHH
Q 004951 536 LLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTL 615 (722)
Q Consensus 536 l~~~~~~lr~l~~tl~~~~~~l~~~~~ll~~~~~ifAiiG~~lF~g~~~~~n~~~~~~~~~~~~y~~~nF~~f~~s~~tL 615 (722)
+++..+.++.+..++.++.+.+..++.+++++++.||++|+++|++....++.... +...+..+..+|++++.|+.++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~~~~--~~~~~~~~~~~f~~~~~s~~~~ 153 (200)
T PF00520_consen 76 LLRRFRSLRRLLRALIRSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCCDPTW--DSENDIYGYENFDSFGESLYWL 153 (200)
T ss_dssp HHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-------S--S----SSTHHHHSSHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccchhheeccccccccccccc--cccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999998866543111 1112223457999999999999
Q ss_pred HHHHhhcCHHHHHHHHHhhhCCceeeeehhhHhHHHHHHHHHHHHHHH
Q 004951 616 FNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFV 663 (722)
Q Consensus 616 f~i~t~e~W~~im~~~~~~~g~~~~~iyFv~f~~i~~~i~lnLfvavi 663 (722)
++++|++||++++.+.+ ..++.++.+||+++.++++++++|+++|++
T Consensus 154 ~~~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 154 FQTMTGEGWGDVMPSCM-SARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp HHHHTTTTCCCCHHHHH-HTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCccccccccc-cccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 99999999999998877 344578899999999999999999999986
No 6
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.85 E-value=8.4e-21 Score=201.78 Aligned_cols=246 Identities=18% Similarity=0.238 Sum_probs=194.4
Q ss_pred chHHHHHHHccccch-------HHHHHHHHHHHHHHHHHhhcccccccch----------------hhHHHHHHHHHHHH
Q 004951 409 SPFSEKLKAFIRSTK-------FGYMISIILIVNLVAVIVETTLDIQESS----------------LQSVWQEVEFVFGW 465 (722)
Q Consensus 409 ~~~r~~~~~iv~~~~-------f~~~i~~iilln~i~l~~~~~~~~~~~~----------------~~~~~~~~e~~f~~ 465 (722)
+++|++++.+++.|. |..+..+.|+++++.+|+.|.++.+... .++.+.++|.+|++
T Consensus 172 ~~~r~rlW~~~E~P~SS~~Ak~fa~~Sv~FVlvSiv~lcL~T~pe~q~~~~~~~~~~~~~~~~~~~~~p~l~~vE~vCi~ 251 (477)
T KOG3713|consen 172 GRLRRRLWALLENPGSSLAAKVFAVLSVLFVLVSIVGLCLGTLPEFQVPDKQGEGLLVNVEKIESEPHPILTYVETVCIA 251 (477)
T ss_pred hhHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCHhhhchhhccccccccccccCCCCCCchHHHHHHHHH
Confidence 448899999998654 7778899999999999999876543222 23468999999999
Q ss_pred HHHHHHHHHHhhh-cchhhhhccccchhHHHHHHHHHHHHHhhcCCCCccccc-hhhHHHHHHHHHHHHHHHHHHHHHhH
Q 004951 466 IYVLEMALKIYSY-GFENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLS-NGEWIRYLLLARMLRLIRLLMHVQQY 543 (722)
Q Consensus 466 iF~~E~~lKi~a~-g~~~y~~~~wn~fD~~vvi~~~i~~i~~~~~~~~~~~~~-~~~~lr~l~~~R~lR~lrl~~~~~~l 543 (722)
+|++|+++|++.. ...+|++++-|++|++.++.-+++..+......+...+. .+.++|++|++|++|++||-|++.++
T Consensus 252 WFT~E~llR~~~~P~k~~F~k~pLNIIDllAIlPFYielll~~~~~~~~~~l~~~~~vvrvlR~lRI~RI~KLaRhS~GL 331 (477)
T KOG3713|consen 252 WFTFEYLLRFLVAPNKLEFFKSPLNIIDLLAILPFYLELLLTLFGGESLKELENAGLVVRVLRVLRILRIFKLARHSTGL 331 (477)
T ss_pred HHHHHHHHHHHcCchHHHHHhCcchHHHHHHHHHHHHHHHHHHhccchHHHHhhhhhhHHHHHHHHHHHHHHHHhhhHHH
Confidence 9999999999955 457899999999999999998888877755432222122 23688999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhccccccCCCCCCCCccccccccccccCChhhHHHHHHHHHhhcC
Q 004951 544 RGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGN 623 (722)
Q Consensus 544 r~l~~tl~~~~~~l~~~~~ll~~~~~ifAiiG~~lF~g~~~~~n~~~~~~~~~~~~y~~~nF~~f~~s~~tLf~i~t~e~ 623 (722)
|.+..|+.+|...+.-++ +|-+.|+-+|+...|.-+.+.+ ..+|.++|.|++.-...||+-|
T Consensus 332 r~lg~Tlr~S~~ElglLl--------lfL~~GI~iFStlvY~~Ek~~~----------~~~FtSIPa~~WWaiVTMTTVG 393 (477)
T KOG3713|consen 332 RTLGLTLRRSYRELGLLL--------LFLAVGIVIFSTLVYFAEKDEP----------DTKFTSIPAGFWWAVVTMTTVG 393 (477)
T ss_pred HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhhhcCC----------CCCCccccchhheeeEEEeeec
Confidence 999999999999975433 3445677777777765332222 2569999999987666666655
Q ss_pred HHHHHHHHHhhhCCceeeeehhhHhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh
Q 004951 624 WQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEKC 679 (722)
Q Consensus 624 W~~im~~~~~~~g~~~~~iyFv~f~~i~~~i~lnLfvavi~e~F~~~~~~~~~~~~ 679 (722)
|.|..+.++.+-...+-.++++++++.|+|.+|++||...|++.+++++
T Consensus 394 -------YGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~~~y~~~k~~~~ 442 (477)
T KOG3713|consen 394 -------YGDMVPVTVLGKLVASLCILCGVLVLALPITIIVNNFSMYYSELKAREK 442 (477)
T ss_pred -------ccCccccccchHHHHHHHHHHhHHHhhcchHhHhhhHHHHHHHHHHHHH
Confidence 4555566778888889999999999999999999999999988887664
No 7
>PLN03223 Polycystin cation channel protein; Provisional
Probab=99.81 E-value=7e-19 Score=202.91 Aligned_cols=200 Identities=19% Similarity=0.235 Sum_probs=155.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc-----chhhhhccccchhHHHHHHHHHHHHHhhcC---------------------
Q 004951 456 WQEVEFVFGWIYVLEMALKIYSYG-----FENYWRDGQNRFDFLVTWVIVIGETITLAS--------------------- 509 (722)
Q Consensus 456 ~~~~e~~f~~iF~~E~~lKi~a~g-----~~~y~~~~wn~fD~~vvi~~~i~~i~~~~~--------------------- 509 (722)
++++-.+|.++|+.+-+.++...+ ..+||+++||++|++++++++...++.+..
T Consensus 1178 cEIIFVLFILYfIyrEIkEI~k~KK~RG~~laYFKSfWNwLEIl~IlLS~AAIvLYFvf~~~~astf~~dIrynIYK~ls 1257 (1634)
T PLN03223 1178 MEILLAIGAVYSVYEEAMDFGSSKKTRGSYLAYFLSGWNYVDFASIGLHLATIMMWFVFSWSYARAFEPDIHYDIYKNLS 1257 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHhccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhhhhhhhh
Confidence 456666777888888888887654 479999999999999998888776553210
Q ss_pred ----------CCCc----cccch-------hh----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 004951 510 ----------PNGQ----TFLSN-------GE----WIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTI 564 (722)
Q Consensus 510 ----------~~~~----~~~~~-------~~----~lr~l~~~R~lR~lrl~~~~~~lr~l~~tl~~~~~~l~~~~~ll 564 (722)
++.. ..+.+ .+ +.-++-+++++|++|+++.+++++.+..|+..+.+.++.+++++
T Consensus 1258 ~sa~fl~Lq~pg~l~d~nd~F~sf~~La~~~q~Y~aL~GIlIFLsiLKfLRLLRFNPrL~vLt~TLrrAapDLa~F~IIF 1337 (1634)
T PLN03223 1258 ASANFTALRIPNELPEMNDMFLEMKNLVDYFQWYMTLSGINIILLLGRILKLMDFQPRLGVITRTLWLAGADLMHFFVIF 1337 (1634)
T ss_pred hhcchhhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 00000 00 11234567889999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHhccccccCCCCCCCCccccccccccccCChhhHHHHHHHHHhhcCHHHHHHHHHhhh--CCceeee
Q 004951 565 FCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELT--GTAWTLA 642 (722)
Q Consensus 565 ~~~~~ifAiiG~~lF~g~~~~~n~~~~~~~~~~~~y~~~nF~~f~~s~~tLf~i~t~e~W~~im~~~~~~~--g~~~~~i 642 (722)
+++++.||++|..+||... .+|.||..|+.|||++++|+. ..++++..... ...++.+
T Consensus 1338 ~IVF~AFAqLG~LLFGt~v-------------------e~FSTf~sSL~TLFqMLLGDf-dYF~eDLk~l~e~nrVLGPI 1397 (1634)
T PLN03223 1338 GMVFVGYAFIGHVIFGNAS-------------------VHFSDMTDSINSLFENLLGDI-TYFNEDLKNLTGLQFVVGMI 1397 (1634)
T ss_pred HHHHHHHHHHHHHHhccCc-------------------hhhcCHHHHHHHHHHHHHcCc-hHHHHHHHhhhcccchHHHH
Confidence 9999999999999999863 369999999999999999764 43444443332 2467999
Q ss_pred ehhhHhHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 004951 643 YFVSFYLITVLLLLNLVIAFVLEAFFAEMELES 675 (722)
Q Consensus 643 yFv~f~~i~~~i~lnLfvavi~e~F~~~~~~~~ 675 (722)
||++|+++..+++||||||+|.++|.+..+...
T Consensus 1398 YFfSFILLV~FILLNMFIAII~DSFsEVK~d~s 1430 (1634)
T PLN03223 1398 YFYSYNIFVFMILFNFLLAIICDAFGEVKANAA 1430 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999999999876543
No 8
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=99.70 E-value=1.4e-17 Score=168.30 Aligned_cols=248 Identities=14% Similarity=0.178 Sum_probs=187.1
Q ss_pred cCchHHHHHHHccccc-------hHHHHHHHHHHHHHHHHHhhcccccccc-----------------------------
Q 004951 407 YHSPFSEKLKAFIRST-------KFGYMISIILIVNLVAVIVETTLDIQES----------------------------- 450 (722)
Q Consensus 407 ~~~~~r~~~~~iv~~~-------~f~~~i~~iilln~i~l~~~~~~~~~~~----------------------------- 450 (722)
+++.+++.++-+.+-| ....+..++|+++++..|+||-+...+.
T Consensus 169 P~n~fqRqvWlLfEYPeSS~~AR~iAiVSVlVIliSIviFClETlPefrderd~~~~~~~~~~~~~~n~~~~~~~~~~~~ 248 (507)
T KOG1545|consen 169 PRNEFQRQVWLLFEYPESSGPARIIAIVSVLVILISIVIFCLETLPEFRDERDLTGHFPAGTGGGVMNPTSGPELLDLGD 248 (507)
T ss_pred CcchHHhhhhheeecccccCCeeeeeehhHHHHHHHHHHHHHHhCchhhhhccccccccccCCCcccCCCCCcccccccc
Confidence 3577888888777543 3455678899999999999975432110
Q ss_pred -hhhHHHHHHHHHHHHHHHHHHHHHHhhhcc-hhhhhccccchhHHHHHHHHHHHHHhhcCCCCcc----ccchhhHHHH
Q 004951 451 -SLQSVWQEVEFVFGWIYVLEMALKIYSYGF-ENYWRDGQNRFDFLVTWVIVIGETITLASPNGQT----FLSNGEWIRY 524 (722)
Q Consensus 451 -~~~~~~~~~e~~f~~iF~~E~~lKi~a~g~-~~y~~~~wn~fD~~vvi~~~i~~i~~~~~~~~~~----~~~~~~~lr~ 524 (722)
...+.+.++|..|.++|++|.++|.+++.- ..|+++..|++|++.++..+|.....+....+.+ ...+..++|+
T Consensus 249 ~~f~dPFFiVEt~CIiWFtfEllvRf~aCPsK~~Ff~nimNiIDiVaI~PyFitlgtela~q~g~g~~gqqaMSlAILRV 328 (507)
T KOG1545|consen 249 TKFTDPFFIVETLCIIWFTFELLVRFFACPSKATFFRNIMNIIDIVAIIPYFITLGTELAEQQGGGGQGQQAMSLAILRV 328 (507)
T ss_pred cccCCchHhHHHHHHHHHhHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCccchhhhhHHHHHH
Confidence 012346789999999999999999999864 5789999999999999998888776655432111 1124568999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhccccccCCCCCCCCccccccccccc
Q 004951 525 LLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFN 604 (722)
Q Consensus 525 l~~~R~lR~lrl~~~~~~lr~l~~tl~~~~~~l~~~~~ll~~~~~ifAiiG~~lF~g~~~~~n~~~~~~~~~~~~y~~~n 604 (722)
+|+.|++|++|+-|++++++.+.+|+..|+..+.-+ +.|-.+|+-||+..+|....+.+ ..+
T Consensus 329 iRLVRVFRIFKLSRHSkGLQILGqTl~aSmrElgLL--------IFFlfIgviLFsSavYFAEade~----------~S~ 390 (507)
T KOG1545|consen 329 IRLVRVFRIFKLSRHSKGLQILGQTLRASMRELGLL--------IFFLFIGVILFSSAVYFAEADEP----------ESH 390 (507)
T ss_pred HHHHHHhhheeeccccchHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhceeeeeecCCC----------ccC
Confidence 999999999999999999999999999999987422 33445899999999886433222 368
Q ss_pred cCChhhHHHHHHHHHhhcCHHHHHHHHHhhhCCceeeeehhhHhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh
Q 004951 605 FNDYPNGMVTLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEKC 679 (722)
Q Consensus 605 F~~f~~s~~tLf~i~t~e~W~~im~~~~~~~g~~~~~iyFv~f~~i~~~i~lnLfvavi~e~F~~~~~~~~~~~~ 679 (722)
|.++|.|++.....||+-|+.|. +....++-...+...+.+++.+.|.|.||+.||.+.|.++.+..+
T Consensus 391 F~SIPdaFWwavVTMTTVGYGDm-------~P~TvgGKIVGslCAiaGVLTiALPVPVIVsNFnyFYhrEte~ee 458 (507)
T KOG1545|consen 391 FSSIPDAFWWAVVTMTTVGYGDM-------VPVTVGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETEGEE 458 (507)
T ss_pred CCcCcccceEEEEEEEeeccccc-------eecccCceehhhHHhhhhheEecccccEEEecccceeeccccchh
Confidence 99999999887777777766653 333334555567778888889999999999999998866655443
No 9
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.69 E-value=8.7e-17 Score=159.31 Aligned_cols=159 Identities=21% Similarity=0.322 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHHHHHHHHhccc--ccccccccccchhhHHHHHHHHHHHHhhhcCccccccchhhhhhhhHHHHHHhchH
Q 004951 138 YEGITLVILIIHTFFPITYEGS--PIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNIR 215 (722)
Q Consensus 138 ~e~~~~~if~~e~~~k~~~~g~--~~y~~~~wn~~d~~i~v~s~i~~~~~~~~~~~~~~~~~~~r~~R~lR~lrli~~~~ 215 (722)
+|.+|.++|++|.++|++..|+ +.|++++||++|+++++.+.++.+.............+.+|++|.+|++|+++..+
T Consensus 2 ~~~~~~~~f~~e~~l~~~~~~~~~~~y~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~~~~~~~ 81 (200)
T PF00520_consen 2 LEIIFDVIFILEIVLRFFALGFKRRRYFRSWWNWFDFISVIPSIVSVILRSYGSASAQSLLRIFRLLRLLRLLRLLRRFR 81 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCG-GCCCCSHHHHHHHHHHHHHCCHHCCHCSS--HHCHCHHHHHHHHHHHHHHHHHTTT
T ss_pred ChHHHHHHHHHHHHHHHHHhccHHHHHhcChhhcccccccccccccccccccccccccceEEEEEeeccccccccccccc
Confidence 6999999999999999999998 88999999999999999998777655432110012356788888999999999888
Q ss_pred HHHHHHHHHHHHHHhHhhhc-------------------------------------cccccccHHHHHHHHHHHHhcCC
Q 004951 216 QLRDTLFVLAGMLGTYLNVL-------------------------------------GNMVFTSFGTTLYQMFVLFTTSN 258 (722)
Q Consensus 216 ~lr~~~~~i~~~l~~~~~i~-------------------------------------~~~~F~~~~~s~~~lf~l~t~e~ 258 (722)
.+++...++.++++.+.... +..+|++++.|++++++++|++|
T Consensus 82 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~f~~~~~s~~~~~~~~t~~~ 161 (200)
T PF00520_consen 82 SLRRLLRALIRSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCCDPTWDSENDIYGYENFDSFGESLYWLFQTMTGEG 161 (200)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-------SS----SSTHHHHSSHHHHHHHHHHHHTTTT
T ss_pred cccccccccccccccccccccccccccccccchhheecccccccccccccccccccccccccccccccccccccccccCC
Confidence 88888776666655543321 13569999999999999999999
Q ss_pred CCCcchhhh-ccCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 004951 259 NPDVWIPAY-KASRWYCLFFVLYVLIGVYFVTNLILAVV 296 (722)
Q Consensus 259 w~dvm~~~~-~~~~~~~ifFi~~i~i~~f~llnLfiaVi 296 (722)
|+|++.+.+ ..++...+|+++++++++++++|+++|++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 162 WGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp CCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 999987765 45666778999999999999999999986
No 10
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.67 E-value=4.4e-16 Score=166.05 Aligned_cols=209 Identities=15% Similarity=0.135 Sum_probs=153.6
Q ss_pred HHHhhcccccccccCCCCccCCCCccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhccc-ccccccccccchhh
Q 004951 95 IVLNFLEKPLWCAKTGVGTYSCYDREYYYLGQLPYLTGWESLVYEGITLVILIIHTFFPITYEGS-PIFWKSTYTRLKVL 173 (722)
Q Consensus 95 l~la~~e~p~~~~~~~~~~~~c~d~~~~~~~~~~~~~~~~~~~~e~~~~~if~~e~~~k~~~~g~-~~y~~~~wn~~d~~ 173 (722)
+.+.+-+.|..+..+......-...++......|.+. ++|.+|++.|++|.+++....+. ..|+|++-|++|++
T Consensus 207 v~lcL~T~pe~q~~~~~~~~~~~~~~~~~~~~~p~l~-----~vE~vCi~WFT~E~llR~~~~P~k~~F~k~pLNIIDll 281 (477)
T KOG3713|consen 207 VGLCLGTLPEFQVPDKQGEGLLVNVEKIESEPHPILT-----YVETVCIAWFTFEYLLRFLVAPNKLEFFKSPLNIIDLL 281 (477)
T ss_pred HHHHHcCCHhhhchhhccccccccccccCCCCCCchH-----HHHHHHHHHHHHHHHHHHHcCchHHHHHhCcchHHHHH
Confidence 4566666777654331000000012222334566553 36999999999999999876554 55999999999999
Q ss_pred HHHHHHHHHHHHhhhc------CccccccchhhhhhhhHHHHHHhchHHHHHHHHHHHHHHHhHh------hhc------
Q 004951 174 CLLILVADFLVYGLYL------SPIAFNFLPLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYL------NVL------ 235 (722)
Q Consensus 174 i~v~s~i~~~~~~~~~------~~~~~~~~~~r~~R~lR~lrli~~~~~lr~~~~~i~~~l~~~~------~i~------ 235 (722)
.++..++++.+..... ......++++|++|++|++||-+++.++|.+..++.++...+. .+.
T Consensus 282 AIlPFYielll~~~~~~~~~~l~~~~~vvrvlR~lRI~RI~KLaRhS~GLr~lg~Tlr~S~~ElglLllfL~~GI~iFSt 361 (477)
T KOG3713|consen 282 AILPFYLELLLTLFGGESLKELENAGLVVRVLRVLRILRIFKLARHSTGLRTLGLTLRRSYRELGLLLLFLAVGIVIFST 361 (477)
T ss_pred HHHHHHHHHHHHHhccchHHHHhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988876532 1112346778888888889999999999998888876544332 111
Q ss_pred ---------cccccccHHHHHHHHHHHHhcCCCCCcchhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004951 236 ---------GNMVFTSFGTTLYQMFVLFTTSNNPDVWIPAYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAK 306 (722)
Q Consensus 236 ---------~~~~F~~~~~s~~~lf~l~t~e~w~dvm~~~~~~~~~~~ifFi~~i~i~~f~llnLfiaVi~~~f~~~~~~ 306 (722)
+..+|.||+.++|+--+.|||-|++| |+|....+...+ +-.+++..+++.|.|.+|+|||.+...+
T Consensus 362 lvY~~Ek~~~~~~FtSIPa~~WWaiVTMTTVGYGD-m~P~T~~Gklva----s~cil~GVLvlAlPItiIv~nF~~~y~~ 436 (477)
T KOG3713|consen 362 LVYFAEKDEPDTKFTSIPAGFWWAVVTMTTVGYGD-MVPVTVLGKLVA----SLCILCGVLVLALPITIIVNNFSMYYSE 436 (477)
T ss_pred HHHHhhhcCCCCCCccccchhheeeEEEeeecccC-ccccccchHHHH----HHHHHHhHHHhhcchHhHhhhHHHHHHH
Confidence 55679999999999999999999999 788887777655 6678889999999999999999987776
Q ss_pred HHHHHHH
Q 004951 307 QVSEMDR 313 (722)
Q Consensus 307 ~~~~~~~ 313 (722)
++++++.
T Consensus 437 ~k~~~~~ 443 (477)
T KOG3713|consen 437 LKAREKA 443 (477)
T ss_pred HHHHHHh
Confidence 5555443
No 11
>PLN03223 Polycystin cation channel protein; Provisional
Probab=99.49 E-value=8.3e-13 Score=153.52 Aligned_cols=172 Identities=11% Similarity=0.077 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHhc-----ccccccccccccchhhHHHHHHHHHHHHhhhc-----------------
Q 004951 135 SLVYEGITLVILI---IHTFFPITYE-----GSPIFWKSTYTRLKVLCLLILVADFLVYGLYL----------------- 189 (722)
Q Consensus 135 ~~~~e~~~~~if~---~e~~~k~~~~-----g~~~y~~~~wn~~d~~i~v~s~i~~~~~~~~~----------------- 189 (722)
.++.|++++++++ ++-+.++.-. +++.||+++||++|+++++++++.+++.+...
T Consensus 1175 vLacEIIFVLFILYfIyrEIkEI~k~KK~RG~~laYFKSfWNwLEIl~IlLS~AAIvLYFvf~~~~astf~~dIrynIYK 1254 (1634)
T PLN03223 1175 RFAMEILLAIGAVYSVYEEAMDFGSSKKTRGSYLAYFLSGWNYVDFASIGLHLATIMMWFVFSWSYARAFEPDIHYDIYK 1254 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHhccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhhhhh
Confidence 3445666655544 4444444432 24679999999999999999988877643210
Q ss_pred --Cc----------cc-----ccc-----------------chhhhhhhhHHHHHHhchHHHHHHHHHHHHHHHhHhhhc
Q 004951 190 --SP----------IA-----FNF-----------------LPLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVL 235 (722)
Q Consensus 190 --~~----------~~-----~~~-----------------~~~r~~R~lR~lrli~~~~~lr~~~~~i~~~l~~~~~i~ 235 (722)
+. .. ..+ ...-+++++|++|+++..|.|+.+..++..+++.++..+
T Consensus 1255 ~ls~sa~fl~Lq~pg~l~d~nd~F~sf~~La~~~q~Y~aL~GIlIFLsiLKfLRLLRFNPrL~vLt~TLrrAapDLa~F~ 1334 (1634)
T PLN03223 1255 NLSASANFTALRIPNELPEMNDMFLEMKNLVDYFQWYMTLSGINIILLLGRILKLMDFQPRLGVITRTLWLAGADLMHFF 1334 (1634)
T ss_pred hhhhhcchhhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHH
Confidence 00 00 000 001235778999999999999998888877776654321
Q ss_pred --------------------cccccccHHHHHHHHHHHHhcCCCC--Ccchhhh-ccCchhHHHHHHHHHHHHHHHHHHH
Q 004951 236 --------------------GNMVFTSFGTTLYQMFVLFTTSNNP--DVWIPAY-KASRWYCLFFVLYVLIGVYFVTNLI 292 (722)
Q Consensus 236 --------------------~~~~F~~~~~s~~~lf~l~t~e~w~--dvm~~~~-~~~~~~~ifFi~~i~i~~f~llnLf 292 (722)
....|.|++.|+.+||++++.+.+. +.+.+.. ....++.+||++|+++..|+++|||
T Consensus 1335 IIF~IVF~AFAqLG~LLFGt~ve~FSTf~sSL~TLFqMLLGDfdYF~eDLk~l~e~nrVLGPIYFfSFILLV~FILLNMF 1414 (1634)
T PLN03223 1335 VIFGMVFVGYAFIGHVIFGNASVHFSDMTDSINSLFENLLGDITYFNEDLKNLTGLQFVVGMIYFYSYNIFVFMILFNFL 1414 (1634)
T ss_pred HHHHHHHHHHHHHHHHHhccCchhhcCHHHHHHHHHHHHHcCchHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3457999999999999999965331 1122222 2345688999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 004951 293 LAVVYDSFKSQLAK 306 (722)
Q Consensus 293 iaVi~~~f~~~~~~ 306 (722)
+|||.++|++.+++
T Consensus 1415 IAII~DSFsEVK~d 1428 (1634)
T PLN03223 1415 LAIICDAFGEVKAN 1428 (1634)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999987654
No 12
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=99.48 E-value=6.5e-13 Score=148.04 Aligned_cols=188 Identities=19% Similarity=0.345 Sum_probs=147.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchhhhhccccchhHHHHHHHHHHHHHhhcC------------CCCccccchh-----
Q 004951 457 QEVEFVFGWIYVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLAS------------PNGQTFLSNG----- 519 (722)
Q Consensus 457 ~~~e~~f~~iF~~E~~lKi~a~g~~~y~~~~wn~fD~~vvi~~~i~~i~~~~~------------~~~~~~~~~~----- 519 (722)
+.+-.++.++|+...+.|+...| ++|+++.||++|+++++++++..++.+.. .+...+..-.
T Consensus 214 ~i~f~~~~l~~~~~ei~~i~~~g-~~y~~~~WN~~e~~ii~ls~~~i~~~~~~~~~~~~~~~~~~~~~~~fv~f~~~a~~ 292 (425)
T PF08016_consen 214 EILFVLFVLYFLYREIKKIRREG-RAYFKSFWNWLELLIILLSLAVIVLYFYRMILASEALKQYRENPRSFVDFQELAQW 292 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-hHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCHHHHHHH
Confidence 44556778889999999999999 79999999999999988777655443111 0111111100
Q ss_pred -----hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhccccccCCCCCCCCc
Q 004951 520 -----EWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETD 594 (722)
Q Consensus 520 -----~~lr~l~~~R~lR~lrl~~~~~~lr~l~~tl~~~~~~l~~~~~ll~~~~~ifAiiG~~lF~g~~~~~n~~~~~~~ 594 (722)
...-++-.+-.+|++|+++..+++..+..|+..+.+.++.+++++++++..||..|.-+||...
T Consensus 293 ~~~~~~l~a~~vfl~~lrll~~l~f~~~~~~~~~tl~~a~~~l~~f~~~~~i~~~~fa~~g~l~fG~~~----------- 361 (425)
T PF08016_consen 293 DQLYRYLLAFLVFLLWLRLLKLLRFNRRLSLLSRTLRRAAKDLLGFFVIFLIIFLAFAQAGYLLFGSYS----------- 361 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHhhheeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc-----------
Confidence 1222345556789999999999999999999999999999999999999999999999998753
Q ss_pred cccccccccccCChhhHHHHHHHHHhhc-CHHHHHHHHHhhhCCceeeeehhhHhHHHHHHHHHHHHHHHHHHHHH
Q 004951 595 LADDDYLLFNFNDYPNGMVTLFNLLVMG-NWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFA 669 (722)
Q Consensus 595 ~~~~~y~~~nF~~f~~s~~tLf~i~t~e-~W~~im~~~~~~~g~~~~~iyFv~f~~i~~~i~lnLfvavi~e~F~~ 669 (722)
.+|.|++.|+.++|+++.++ ++.++ ...+...+.+||++|.++..++++|+|+|++.++|.+
T Consensus 362 --------~~f~s~~~s~~tl~~~l~g~~~~~~~-----~~~~~~lg~l~~~~~~~~~~~illNl~iaIi~~~y~~ 424 (425)
T PF08016_consen 362 --------EDFSSFSSSLVTLFRMLLGDFDYDEL-----YQANPVLGPLFFFSFMFLVFFILLNLFIAIINDSYEE 424 (425)
T ss_pred --------cccCCHHHHHHHHHHHhcCCCchhhh-----hcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 47999999999999999886 33322 1233466899999999999999999999999999975
No 13
>KOG3599 consensus Ca2+-modulated nonselective cation channel polycystin [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.46 E-value=1e-12 Score=152.54 Aligned_cols=198 Identities=17% Similarity=0.302 Sum_probs=156.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchhhhhccccchhHHHHHHHHHHHHHhhcC-------------CCCccccchhh--
Q 004951 456 WQEVEFVFGWIYVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLAS-------------PNGQTFLSNGE-- 520 (722)
Q Consensus 456 ~~~~e~~f~~iF~~E~~lKi~a~g~~~y~~~~wn~fD~~vvi~~~i~~i~~~~~-------------~~~~~~~~~~~-- 520 (722)
...+-++|.++|+++.+.|+.-.+...|+++.||+.|+.++.++++..++.... .+...+.+-..
T Consensus 468 ~~vvf~l~~~yf~~~e~~~i~~~~~~~y~~s~wN~ld~~i~~ls~~~~~~~~~r~~l~~~~l~~~~~~~~~~f~~F~~~a 547 (798)
T KOG3599|consen 468 CEVVFLLFVLYFAVAEGLKIWIHRLGRYVRSKWNWLDLAIVLLSVVLLVLMITRTGLADGVLTGFERASPRTFIDFTEVA 547 (798)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHH
Confidence 355667888999999999999888789999999999999999888766554222 11111111111
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhccccccCCCCCCC
Q 004951 521 --------WIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEE 592 (722)
Q Consensus 521 --------~lr~l~~~R~lR~lrl~~~~~~lr~l~~tl~~~~~~l~~~~~ll~~~~~ifAiiG~~lF~g~~~~~n~~~~~ 592 (722)
..-++-.+-.+|++|+++.+++++.+-.|+..++++++.+++..+++++.||.+|..+||...
T Consensus 548 ~~~~~~~~l~a~lvfl~tiK~~k~l~f~~t~~~~s~TL~ra~~~I~gf~l~~~I~~~aya~l~~llfG~~v--------- 618 (798)
T KOG3599|consen 548 QWNIAARNLLAFLVFLTTIKLWKVLRFNKTMSQFSSTLSRAWKEIVGFALMFLILFFAYAQLGYLLFGNQV--------- 618 (798)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc---------
Confidence 112344555678999999999999999999999999999999999999999999999999874
Q ss_pred CccccccccccccCChhhHHHHHHHHHhhcCHHHHHHHHHhhhCCceeeeehhhHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 004951 593 TDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEME 672 (722)
Q Consensus 593 ~~~~~~~y~~~nF~~f~~s~~tLf~i~t~e~W~~im~~~~~~~g~~~~~iyFv~f~~i~~~i~lnLfvavi~e~F~~~~~ 672 (722)
-||.||.+|+.|++..+-|+ +-.......+...+.+||.++.+++.++++|||+|+|.+.|.+.++
T Consensus 619 ----------~~f~~f~~s~~t~~~~~~G~----~~~~~i~~~~r~LG~~~~~~~v~~v~~illnmF~aiI~~~~~evk~ 684 (798)
T KOG3599|consen 619 ----------SDFRTFVASIVTLLRYILGD----FCPAEIFHANRILGPLLFLTYVFVVSFILLNLFVAIINDTYGEVKA 684 (798)
T ss_pred ----------CChHHHHHHHHHHHHHHhcc----CCccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhH
Confidence 47999999999999998872 2111222334456899999999999999999999999999999887
Q ss_pred Hhhh
Q 004951 673 LESS 676 (722)
Q Consensus 673 ~~~~ 676 (722)
..++
T Consensus 685 ~~~~ 688 (798)
T KOG3599|consen 685 DLAK 688 (798)
T ss_pred HHhh
Confidence 6666
No 14
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=99.40 E-value=3.8e-15 Score=151.87 Aligned_cols=239 Identities=14% Similarity=0.142 Sum_probs=176.9
Q ss_pred chHHHHHHHccccc-------hHHHHHHHHHHHHHHHHHhhcccccccc----------hhhHHHHHHHHHHHHHHHHHH
Q 004951 409 SPFSEKLKAFIRST-------KFGYMISIILIVNLVAVIVETTLDIQES----------SLQSVWQEVEFVFGWIYVLEM 471 (722)
Q Consensus 409 ~~~r~~~~~iv~~~-------~f~~~i~~iilln~i~l~~~~~~~~~~~----------~~~~~~~~~e~~f~~iF~~E~ 471 (722)
..+|+++++..++| .|.++.-+.|.+++++-++|+.+-...+ .+...+..+|..|+.||+.|+
T Consensus 165 ls~rq~mWrAFENPHTst~ALVFYYVtGFFIAVSVi~NvVETiPCg~~~~~~~e~pCGEry~~aFFclDTACVmIFT~EY 244 (632)
T KOG4390|consen 165 LSLRQRMWRAFENPHTSTAALVFYYVTGFFIAVSVIANVVETIPCGGSPGRSKELPCGERYPVAFFCLDTACVMIFTGEY 244 (632)
T ss_pred chHHHHHHHHhcCCCcchhhhhhhhhhhhhhhhhhhhceeeecccCCCCCCceecccccccceeeEEecceeEEEeeHHH
Confidence 45788899888876 4888888888889988888875432111 122345578999999999999
Q ss_pred HHHHhhhc-chhhhhccccchhHHHHHHHHHHHHHhhcCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 004951 472 ALKIYSYG-FENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATF 550 (722)
Q Consensus 472 ~lKi~a~g-~~~y~~~~wn~fD~~vvi~~~i~~i~~~~~~~~~~~~~~~~~lr~l~~~R~lR~lrl~~~~~~lr~l~~tl 550 (722)
+||+++.. -.+|.|+...++|.+.+...+|++++.-..+.+..+ -.+|+||++|++|.-++.+++|.+..|+
T Consensus 245 lLRL~aAPsR~rF~RSvMSiIDVvAIlPYYigLv~t~N~DVSGaF-------VTLRVFRVFRIFKFSRHSQGLRILGYTL 317 (632)
T KOG4390|consen 245 LLRLFAAPSRYRFLRSVMSIIDVVAILPYYIGLVMTDNEDVSGAF-------VTLRVFRVFRIFKFSRHSQGLRILGYTL 317 (632)
T ss_pred HHHHHcCchHHHHHHHHHHHHHHhhhhhhheEEEecCCcccccee-------EEEEeeeeeeeeeecccccccchhhhhH
Confidence 99999764 357889999999999888888776654222211111 2368899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHhccccccCCCCCCCCccccccccccccCChhhHHHHHHHHHhhcCHHHHHHH
Q 004951 551 LTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQS 630 (722)
Q Consensus 551 ~~~~~~l~~~~~ll~~~~~ifAiiG~~lF~g~~~~~n~~~~~~~~~~~~y~~~nF~~f~~s~~tLf~i~t~e~W~~im~~ 630 (722)
..+...+.-+++-+-+.+++||.+....=.|. . ..+|.++|.|++-....||.-|+.|..
T Consensus 318 KSCASELGFLlFSLtMAIIIFATvMfYAEKg~--~----------------at~FTsIPaaFWYTIVTmTTLGYGDMV-- 377 (632)
T KOG4390|consen 318 KSCASELGFLLFSLTMAIIIFATVMFYAEKGS--S----------------ATKFTSIPAAFWYTIVTMTTLGYGDMV-- 377 (632)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhhhccc--c----------------ccccccCcHhHhhheeeeeeccccccc--
Confidence 99999987766666666677776532211111 0 368999999999777777777766654
Q ss_pred HHhhhCCceeeeehhhHhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh
Q 004951 631 YKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEKC 679 (722)
Q Consensus 631 ~~~~~g~~~~~iyFv~f~~i~~~i~lnLfvavi~e~F~~~~~~~~~~~~ 679 (722)
.+..++-.|.+..-+++++++.|.|.||+.||+..|.+++....
T Consensus 378 -----p~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFSRIYHQNQRADK 421 (632)
T KOG4390|consen 378 -----PSTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIYHQNQRADK 421 (632)
T ss_pred -----hHHHHHHHhhhhhcccceEEEeccccEEEechhHHHhhhhhhhH
Confidence 33445556667777888889999999999999999877665543
No 15
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=99.27 E-value=1.5e-12 Score=132.18 Aligned_cols=161 Identities=12% Similarity=0.127 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccc-ccccccccchhhHHHHHHHHHHHHhhhcCccc---c---ccchhhhhhh---hH
Q 004951 137 VYEGITLVILIIHTFFPITYEGSPI-FWKSTYTRLKVLCLLILVADFLVYGLYLSPIA---F---NFLPLRIAPY---IR 206 (722)
Q Consensus 137 ~~e~~~~~if~~e~~~k~~~~g~~~-y~~~~wn~~d~~i~v~s~i~~~~~~~~~~~~~---~---~~~~~r~~R~---lR 206 (722)
++|..|+++|++|++++.++.+.++ |+||-.|++|++.++..+|.+...+....+.+ . .+..+|+.|+ +|
T Consensus 257 iVEt~CIiWFtfEllvRf~aCPsK~~Ff~nimNiIDiVaI~PyFitlgtela~q~g~g~~gqqaMSlAILRViRLVRVFR 336 (507)
T KOG1545|consen 257 IVETLCIIWFTFELLVRFFACPSKATFFRNIMNIIDIVAIIPYFITLGTELAEQQGGGGQGQQAMSLAILRVIRLVRVFR 336 (507)
T ss_pred hHHHHHHHHHhHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCccchhhhhHHHHHHHHHHHHhh
Confidence 4799999999999999998888765 99999999999999999999988877542221 1 2344555444 44
Q ss_pred HHHHHhchHHHHHHHHHHHHHHHh------Hhhhc---------------cccccccHHHHHHHHHHHHhcCCCCCcchh
Q 004951 207 VVFFILNIRQLRDTLFVLAGMLGT------YLNVL---------------GNMVFTSFGTTLYQMFVLFTTSNNPDVWIP 265 (722)
Q Consensus 207 ~lrli~~~~~lr~~~~~i~~~l~~------~~~i~---------------~~~~F~~~~~s~~~lf~l~t~e~w~dvm~~ 265 (722)
++++-+++++++-+-+++..+... ++++. ...+|.++++|||...+.|||-|+.| |.|
T Consensus 337 IFKLSRHSkGLQILGqTl~aSmrElgLLIFFlfIgviLFsSavYFAEade~~S~F~SIPdaFWwavVTMTTVGYGD-m~P 415 (507)
T KOG1545|consen 337 IFKLSRHSKGLQILGQTLRASMRELGLLIFFLFIGVILFSSAVYFAEADEPESHFSSIPDAFWWAVVTMTTVGYGD-MVP 415 (507)
T ss_pred heeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhceeeeeecCCCccCCCcCcccceEEEEEEEeecccc-cee
Confidence 444555677777665555443322 22221 55689999999999999999999999 788
Q ss_pred hhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004951 266 AYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKS 302 (722)
Q Consensus 266 ~~~~~~~~~ifFi~~i~i~~f~llnLfiaVi~~~f~~ 302 (722)
..-.+.+.+ +.+-+...+-+.|.+-||+.||+-
T Consensus 416 ~TvgGKIVG----slCAiaGVLTiALPVPVIVsNFny 448 (507)
T KOG1545|consen 416 VTVGGKIVG----SLCAIAGVLTIALPVPVIVSNFNY 448 (507)
T ss_pred cccCceehh----hHHhhhhheEecccccEEEecccc
Confidence 887777754 566677788889999999999963
No 16
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.19 E-value=4.4e-10 Score=134.41 Aligned_cols=220 Identities=13% Similarity=0.016 Sum_probs=148.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchhhhhccccchhHHHHHHHHHHHHHhhc---C-C-CC----------ccccchhh
Q 004951 456 WQEVEFVFGWIYVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLA---S-P-NG----------QTFLSNGE 520 (722)
Q Consensus 456 ~~~~e~~f~~iF~~E~~lKi~a~g~~~y~~~~wn~fD~~vvi~~~i~~i~~~~---~-~-~~----------~~~~~~~~ 520 (722)
.+++-......+..+....++..|...|+++.||.+|++.....++..+.... . . .. ........
T Consensus 391 ~e~~~~~~~~~~~~~e~~~~~~~g~~~y~~~~wn~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (743)
T TIGR00870 391 LEMLIVTWVDGLRLGEEKLIWLGGIFEYIHQLWNILDFGMNSFYLATFLDRPFAILFVTQAFLVLREHWLRFDPTLIEEA 470 (743)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhhhhhhhcccCchhHHHH
Confidence 34455566667788888888888988999999999999654433332211100 0 0 00 00000112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhHHHhccccccC-CCCCCCCccccc
Q 004951 521 WIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIP-SLMPYLGTIFCVQCIYCSLGVQIFGGIVNAG-NAKLEETDLADD 598 (722)
Q Consensus 521 ~lr~l~~~R~lR~lrl~~~~~~lr~l~~tl~~~~~-~l~~~~~ll~~~~~ifAiiG~~lF~g~~~~~-n~~~~~~~~~~~ 598 (722)
.+-+..++..+|++.+++.++.+--+..++.+.+. .++.++++++++++.||+....+|+...... +...+.+. ...
T Consensus 471 l~a~~~~l~~~rll~~~~~~~~lGp~~i~l~~mi~~dl~~F~~i~~v~l~aF~~~~~~l~~~~~~~~~~~~~~~~~-~~~ 549 (743)
T TIGR00870 471 LFAFALVLSWLNLLYIFRGNQHLGPLQIMIGRMILGDILRFLFIYAVVLFGFACGLNQLYQYYDELKLNECSNPHA-RSC 549 (743)
T ss_pred HHHHHHHHHHHHHHHHHhhchhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccc-ccc
Confidence 34455667777777777888877778888988888 9999999999999999999999997543210 00000000 001
Q ss_pred cccccccCChhhHHHHHHHHHhhcCHHHHHHHHHhhhCCceeeeehhhHhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh
Q 004951 599 DYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEK 678 (722)
Q Consensus 599 ~y~~~nF~~f~~s~~tLf~i~t~e~W~~im~~~~~~~g~~~~~iyFv~f~~i~~~i~lnLfvavi~e~F~~~~~~~~~~~ 678 (722)
......|.++..++.+||..+-|++-. . .........++.++|++|.++++++++||+||++-+.|++..+.+..+.
T Consensus 550 ~~~~~~f~~~~~s~~~lf~~~~G~~~~--~-~~~~~~~~~~~~il~~~y~~i~~ilLlNlLIAmm~~t~~~v~~~~~~~w 626 (743)
T TIGR00870 550 EKQGNAYSTLFETSQELFWAIIGLGDL--L-ANEHKFTEFVGLLLFGAYNVIMYILLLNMLIAMMGNTYQLIADDADEEW 626 (743)
T ss_pred ccccccccCHHHHHHHHHHHHcCCccc--c-cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHH
Confidence 112368999999999999888876422 1 1111112356899999999999999999999999999999877655544
Q ss_pred h
Q 004951 679 C 679 (722)
Q Consensus 679 ~ 679 (722)
.
T Consensus 627 k 627 (743)
T TIGR00870 627 K 627 (743)
T ss_pred H
Confidence 3
No 17
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=98.95 E-value=6.3e-12 Score=128.66 Aligned_cols=160 Identities=18% Similarity=0.210 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHHHHHHHHhccc-ccccccccccchhhHHHHHHHHHHHHhhhcCccccccchhhhhhhhHHHHHHhchHH
Q 004951 138 YEGITLVILIIHTFFPITYEGS-PIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNIRQ 216 (722)
Q Consensus 138 ~e~~~~~if~~e~~~k~~~~g~-~~y~~~~wn~~d~~i~v~s~i~~~~~~~~~~~~~~~~~~~r~~R~lR~lrli~~~~~ 216 (722)
+|..|+++|+.|.+++.++.+. -.|.|+...++|.+.++..+|.+++.-.. ......-.+|++|++|+++.-+++.+
T Consensus 232 lDTACVmIFT~EYlLRL~aAPsR~rF~RSvMSiIDVvAIlPYYigLv~t~N~--DVSGaFVTLRVFRVFRIFKFSRHSQG 309 (632)
T KOG4390|consen 232 LDTACVMIFTGEYLLRLFAAPSRYRFLRSVMSIIDVVAILPYYIGLVMTDNE--DVSGAFVTLRVFRVFRIFKFSRHSQG 309 (632)
T ss_pred ecceeEEEeeHHHHHHHHcCchHHHHHHHHHHHHHHhhhhhhheEEEecCCc--cccceeEEEEeeeeeeeeeecccccc
Confidence 5999999999999999886655 44899999999999999888877665432 12224567888888999999989988
Q ss_pred HHHHHHHHHHHHHhHhhh--------------c-------cccccccHHHHHHHHHHHHhcCCCCCcchhhhccCchhHH
Q 004951 217 LRDTLFVLAGMLGTYLNV--------------L-------GNMVFTSFGTTLYQMFVLFTTSNNPDVWIPAYKASRWYCL 275 (722)
Q Consensus 217 lr~~~~~i~~~l~~~~~i--------------~-------~~~~F~~~~~s~~~lf~l~t~e~w~dvm~~~~~~~~~~~i 275 (722)
+|.+-.++..+...+.++ + ....|.+++.|||-..+.+||-|++| |.|..-.+.
T Consensus 310 LRILGYTLKSCASELGFLlFSLtMAIIIFATvMfYAEKg~~at~FTsIPaaFWYTIVTmTTLGYGD-MVp~TIaGK---- 384 (632)
T KOG4390|consen 310 LRILGYTLKSCASELGFLLFSLTMAIIIFATVMFYAEKGSSATKFTSIPAAFWYTIVTMTTLGYGD-MVPSTIAGK---- 384 (632)
T ss_pred cchhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccccccccCcHhHhhheeeeeeccccc-cchHHHHHH----
Confidence 887665554433322211 1 56789999999999999999999999 566443333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004951 276 FFVLYVLIGVYFVTNLILAVVYDSFKSQL 304 (722)
Q Consensus 276 fFi~~i~i~~f~llnLfiaVi~~~f~~~~ 304 (722)
-|.+.+-+...+++.|.+-||+.||+...
T Consensus 385 IfGsiCSLSGVLVIALPVPvIVSNFSRIY 413 (632)
T KOG4390|consen 385 IFGSICSLSGVLVIALPVPVIVSNFSRIY 413 (632)
T ss_pred HhhhhhcccceEEEeccccEEEechhHHH
Confidence 36677778888899999999999998543
No 18
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=98.95 E-value=3.1e-09 Score=114.23 Aligned_cols=242 Identities=15% Similarity=0.241 Sum_probs=155.8
Q ss_pred hHHHHHHHccccch------HHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcc---
Q 004951 410 PFSEKLKAFIRSTK------FGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIYSYGF--- 480 (722)
Q Consensus 410 ~~r~~~~~iv~~~~------f~~~i~~iilln~i~l~~~~~~~~~~~~~~~~~~~~e~~f~~iF~~E~~lKi~a~g~--- 480 (722)
+.+.+++.+.+.|. +..++.++++.++++-++.|.. .........+.++|++++++|.+|+++|+++.|-
T Consensus 76 r~q~~vYN~LERPrGWkaf~YH~~VFllVl~CLILsV~STi~-e~~~~a~~~L~~LEiv~IV~Fg~EfivRlWSAGC~~r 154 (654)
T KOG1419|consen 76 RIQNKVYNFLERPRGWKAFLYHFFVFLLVLSCLILSVLSTIE-EYEKLASGILYILEIVMIVFFGLEFIVRLWSAGCCCR 154 (654)
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHhcccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 34566677766542 2233444444444444444432 2223455678899999999999999999998874
Q ss_pred -------hhhhhccccchhHHHHHHHHHHHHHhhcCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 004951 481 -------ENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTL 553 (722)
Q Consensus 481 -------~~y~~~~wn~fD~~vvi~~~i~~i~~~~~~~~~~~~~~~~~lr~l~~~R~lR~lrl~~~~~~lr~l~~tl~~~ 553 (722)
-.|-+.+...+|++|++.+++.+.+. +.+..+ ....+|-+|.+.+||++|+=+.--.++.+-..+..-
T Consensus 155 YrG~~GRLrFarkp~cvIDiivi~Asi~vl~~g---~qG~vf--atSalrslRFlQILRmlr~DRrggTWKLLGSvV~aH 229 (654)
T KOG1419|consen 155 YRGWYGRLRFARKPFCVIDIIVIIASIAVLAAG---SQGNVF--ATSALRSLRFLQILRMLRMDRRGGTWKLLGSVVYAH 229 (654)
T ss_pred cccceeeEEeecCCceEEEEeeeeeeeeEEEec---Ccccee--ehhhhhhhHHHHHHHHHHhhccCchhhhhhhhhhhh
Confidence 35668889999999887765433221 112111 223567778888888888888777888888777766
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHhccccccCCCCCCCCccccccccccccCChhhHHH-HHHHHHhhcCHHHHHHHHH
Q 004951 554 IPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMV-TLFNLLVMGNWQVWMQSYK 632 (722)
Q Consensus 554 ~~~l~~~~~ll~~~~~ifAiiG~~lF~g~~~~~n~~~~~~~~~~~~y~~~nF~~f~~s~~-tLf~i~t~e~W~~im~~~~ 632 (722)
-+.++....+-|++ .+|+..-+++=.-.. .+.+ .+..|.++..|++ .+..++|.. |.
T Consensus 230 ~~ELiTt~YIGFL~-LIfsSflVYLaEKd~-------~~e~------~n~~F~TyADALWWG~ITltTIG--------YG 287 (654)
T KOG1419|consen 230 SKELITTWYIGFLV-LIFSSFLVYLAEKDA-------QGEG------TNDEFPTYADALWWGVITLTTIG--------YG 287 (654)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHhhccc-------cccc------ccccchhHHHHHHhhheeEEeec--------cC
Confidence 66665443333222 233333333311111 1111 1357999999996 566666655 77
Q ss_pred hhhCCceeeeehhhHhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh
Q 004951 633 ELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEKC 679 (722)
Q Consensus 633 ~~~g~~~~~iyFv~f~~i~~~i~lnLfvavi~e~F~~~~~~~~~~~~ 679 (722)
|.++..|-.-+..++.-+.++-+..|.-+++-..|....++...++.
T Consensus 288 Dk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALKVQeq~RQKH 334 (654)
T KOG1419|consen 288 DKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALKVQEQHRQKH 334 (654)
T ss_pred CcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhhhHHHHHHHH
Confidence 88888887777888777788889999999999999887666555443
No 19
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=98.90 E-value=1.1e-08 Score=114.14 Aligned_cols=158 Identities=21% Similarity=0.344 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHhhhcCcc----------cc---cc-------chhh
Q 004951 141 ITLVILIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPI----------AF---NF-------LPLR 200 (722)
Q Consensus 141 ~~~~if~~e~~~k~~~~g~~~y~~~~wn~~d~~i~v~s~i~~~~~~~~~~~~----------~~---~~-------~~~r 200 (722)
++++.|+.+-+.++...| ++|++++||++|+++++++++.++......... .. .+ +..+
T Consensus 219 ~~~l~~~~~ei~~i~~~g-~~y~~~~WN~~e~~ii~ls~~~i~~~~~~~~~~~~~~~~~~~~~~~fv~f~~~a~~~~~~~ 297 (425)
T PF08016_consen 219 LFVLYFLYREIKKIRREG-RAYFKSFWNWLELLIILLSLAVIVLYFYRMILASEALKQYRENPRSFVDFQELAQWDQLYR 297 (425)
T ss_pred HHHHHHHHHHHHHHHHhh-hHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCHHHHHHHHHHHH
Confidence 344455566666777777 679999999999999999888766654321000 00 00 0011
Q ss_pred -------hhhhhHHHHHHhchHHHHHHHHHHHHHHHhHhhhc--------------------cccccccHHHHHHHHHHH
Q 004951 201 -------IAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVL--------------------GNMVFTSFGTTLYQMFVL 253 (722)
Q Consensus 201 -------~~R~lR~lrli~~~~~lr~~~~~i~~~l~~~~~i~--------------------~~~~F~~~~~s~~~lf~l 253 (722)
.+-.+|.+|+++..+.+..+.+++.++.+.++... ...+|.++..|+.+++.+
T Consensus 298 ~l~a~~vfl~~lrll~~l~f~~~~~~~~~tl~~a~~~l~~f~~~~~i~~~~fa~~g~l~fG~~~~~f~s~~~s~~tl~~~ 377 (425)
T PF08016_consen 298 YLLAFLVFLLWLRLLKLLRFNRRLSLLSRTLRRAAKDLLGFFVIFLIIFLAFAQAGYLLFGSYSEDFSSFSSSLVTLFRM 377 (425)
T ss_pred HHHHHHHHHHHHHHhhheeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccCCHHHHHHHHHHH
Confidence 12356666777777777666666665555433211 346899999999999998
Q ss_pred HhcCCCCCcchhhhccC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004951 254 FTTSNNPDVWIPAYKAS-RWYCLFFVLYVLIGVYFVTNLILAVVYDSFKS 302 (722)
Q Consensus 254 ~t~e~w~dvm~~~~~~~-~~~~ifFi~~i~i~~f~llnLfiaVi~~~f~~ 302 (722)
+-.+.--+ .....+ ..+.+||++|+++..++++|+++|++.++|++
T Consensus 378 l~g~~~~~---~~~~~~~~lg~l~~~~~~~~~~~illNl~iaIi~~~y~~ 424 (425)
T PF08016_consen 378 LLGDFDYD---ELYQANPVLGPLFFFSFMFLVFFILLNLFIAIINDSYEE 424 (425)
T ss_pred hcCCCchh---hhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 87542111 222334 44568999999999999999999999999975
No 20
>KOG3599 consensus Ca2+-modulated nonselective cation channel polycystin [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.77 E-value=1.7e-07 Score=109.66 Aligned_cols=162 Identities=14% Similarity=0.177 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHhhhcCcccc-----------ccc----------hhh
Q 004951 142 TLVILIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAF-----------NFL----------PLR 200 (722)
Q Consensus 142 ~~~if~~e~~~k~~~~g~~~y~~~~wn~~d~~i~v~s~i~~~~~~~~~~~~~~-----------~~~----------~~r 200 (722)
+.+.|+++-+.++.-.+.+.|++++||++|++++.++++.+++.....+.... ... .++
T Consensus 475 ~~~yf~~~e~~~i~~~~~~~y~~s~wN~ld~~i~~ls~~~~~~~~~r~~l~~~~l~~~~~~~~~~f~~F~~~a~~~~~~~ 554 (798)
T KOG3599|consen 475 FVLYFAVAEGLKIWIHRLGRYVRSKWNWLDLAIVLLSVVLLVLMITRTGLADGVLTGFERASPRTFIDFTEVAQWNIAAR 554 (798)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHH
Confidence 34445566666666566667999999999999999999988776554311100 000 111
Q ss_pred -------hhhhhHHHHHHhchHHHHHHHHHHHHHHHhHhhhc--------------------cccccccHHHHHHHHHHH
Q 004951 201 -------IAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVL--------------------GNMVFTSFGTTLYQMFVL 253 (722)
Q Consensus 201 -------~~R~lR~lrli~~~~~lr~~~~~i~~~l~~~~~i~--------------------~~~~F~~~~~s~~~lf~l 253 (722)
.+=.+|.+++++..+.++.+-+++.++++.++... ...+|.|+.+|+.+++-.
T Consensus 555 ~l~a~lvfl~tiK~~k~l~f~~t~~~~s~TL~ra~~~I~gf~l~~~I~~~aya~l~~llfG~~v~~f~~f~~s~~t~~~~ 634 (798)
T KOG3599|consen 555 NLLAFLVFLTTIKLWKVLRFNKTMSQFSSTLSRAWKEIVGFALMFLILFFAYAQLGYLLFGNQVSDFRTFVASIVTLLRY 634 (798)
T ss_pred HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCChHHHHHHHHHHHHH
Confidence 12355666667767777766666666555543111 446799999999999988
Q ss_pred HhcCCCCCcch-hhhccCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004951 254 FTTSNNPDVWI-PAYKASRW-YCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQ 307 (722)
Q Consensus 254 ~t~e~w~dvm~-~~~~~~~~-~~ifFi~~i~i~~f~llnLfiaVi~~~f~~~~~~~ 307 (722)
.-. |.-. .....+++ ..+||.+|++++.++++|||+|+|.+.|.+.+...
T Consensus 635 ~~G----~~~~~~i~~~~r~LG~~~~~~~v~~v~~illnmF~aiI~~~~~evk~~~ 686 (798)
T KOG3599|consen 635 ILG----DFCPAEIFHANRILGPLLFLTYVFVVSFILLNLFVAIINDTYGEVKADL 686 (798)
T ss_pred Hhc----cCCccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHH
Confidence 775 3321 23355655 55799999999999999999999999998776543
No 21
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.66 E-value=3.6e-07 Score=103.88 Aligned_cols=213 Identities=14% Similarity=0.115 Sum_probs=141.4
Q ss_pred HHHHHHHHHHHHHHhhhcchhhhhccccchhHHHHHHHHHHHHHhhcC----CCC-------------ccccchhhHHHH
Q 004951 462 VFGWIYVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLAS----PNG-------------QTFLSNGEWIRY 524 (722)
Q Consensus 462 ~f~~iF~~E~~lKi~a~g~~~y~~~~wn~fD~~vvi~~~i~~i~~~~~----~~~-------------~~~~~~~~~lr~ 524 (722)
.-+.=++.|-+-.++..|++.|+++.||++|+....+.+...++.... ... .+.+-.....-+
T Consensus 392 ~wV~G~iw~E~k~lw~~G~~~y~~~~Wn~lDf~m~siyl~s~~lr~~a~~~~~~~~~~~~~R~~W~~~dp~ll~E~lfAi 471 (822)
T KOG3609|consen 392 LWVMGLIWEEIKELWRVGRDGYLAFWWNWLDFAMISIYLASFILRAVAWGKREAFDPSSVDRMHWPSFDPSLLAEGLFAI 471 (822)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhCCCCcHHHHHHHHHHH
Confidence 344446778888889999999999999999998877665554442111 000 000111223445
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhcccccc-CCCCCCCCcccccccccc
Q 004951 525 LLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNA-GNAKLEETDLADDDYLLF 603 (722)
Q Consensus 525 l~~~R~lR~lrl~~~~~~lr~l~~tl~~~~~~l~~~~~ll~~~~~ifAiiG~~lF~g~~~~-~n~~~~~~~~~~~~y~~~ 603 (722)
-.+|-.+|++-++..++.+.-+.-++.+.+..+..++++..++++.|++--.+++...... .+.. + .+.+.. ..
T Consensus 472 A~V~S~lrl~~i~t~n~~lGPlqISlGrmv~Di~kF~~I~~lvl~aF~iGl~qLy~yy~~~~~~~~-~-~~~~~~---~~ 546 (822)
T KOG3609|consen 472 ANVLSFLKLFYIFTMNPSLGPLQISLGRMVGDIYKFLFIFVLVLVAFSIGLNQLYDYYLNRKTMKI-D-QDYTKT---TD 546 (822)
T ss_pred HHHHHHHHHHHHhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhccchHhhhhcchhhccc-c-cccccc---cc
Confidence 6777888888888888888888889999999999999999999999998767776654321 1111 1 111111 12
Q ss_pred ccCChhhHHHHHHHHHh-hcCHHHHHHHHHhhhCCceeeeehhhHhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh
Q 004951 604 NFNDYPNGMVTLFNLLV-MGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEKC 679 (722)
Q Consensus 604 nF~~f~~s~~tLf~i~t-~e~W~~im~~~~~~~g~~~~~iyFv~f~~i~~~i~lnLfvavi~e~F~~~~~~~~~~~~ 679 (722)
.|.++..++-+||=-.. .-+=..++..+...-...++.+.|.+|+++..+++|||.||.+-.+|++.-+.+..|-+
T Consensus 547 ~fsti~eS~~tLFWsiFglv~~~~~~l~~~Hkf~e~ig~~lfG~Y~vi~vIVLLNmLIAMmnnSyQeIeD~ADvEWK 623 (822)
T KOG3609|consen 547 SFSTIGESSKTLFWSIFGLVVLGSVVLPYKHKFTEFIGEVLFGVYNVILIIVLLNLLIAMMSNSYQEIEDDADVEWK 623 (822)
T ss_pred ccccHHHHHHHHHHHHHhcccccceecccchhHHHHHHHHHHHhhheeeHHHHHHHHHHHHHhHHHHHhhcchhHHH
Confidence 78999999888872221 11100001011101113567899999999999999999999999999998766655544
No 22
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=98.40 E-value=1.4e-05 Score=95.95 Aligned_cols=69 Identities=13% Similarity=0.126 Sum_probs=52.5
Q ss_pred cccccHHHHHHHHHHHHhcCCCCCcch-hhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004951 238 MVFTSFGTTLYQMFVLFTTSNNPDVWI-PAYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQV 308 (722)
Q Consensus 238 ~~F~~~~~s~~~lf~l~t~e~w~dvm~-~~~~~~~~~~ifFi~~i~i~~f~llnLfiaVi~~~f~~~~~~~~ 308 (722)
..|.++..++.++|..+-.+ .|... ......+++.++|++|.++.+++++||+||++.++|++...++.
T Consensus 554 ~~f~~~~~s~~~lf~~~~G~--~~~~~~~~~~~~~~~~il~~~y~~i~~ilLlNlLIAmm~~t~~~v~~~~~ 623 (743)
T TIGR00870 554 NAYSTLFETSQELFWAIIGL--GDLLANEHKFTEFVGLLLFGAYNVIMYILLLNMLIAMMGNTYQLIADDAD 623 (743)
T ss_pred ccccCHHHHHHHHHHHHcCC--cccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhH
Confidence 56999999999999776654 23211 11123456778999999999999999999999999987665543
No 23
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=98.33 E-value=7e-06 Score=88.99 Aligned_cols=160 Identities=14% Similarity=0.176 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc----------ccccccccccccchhhHHHHHHHHHHHHhhhcCc--cccccchhhhh
Q 004951 135 SLVYEGITLVILIIHTFFPITYE----------GSPIFWKSTYTRLKVLCLLILVADFLVYGLYLSP--IAFNFLPLRIA 202 (722)
Q Consensus 135 ~~~~e~~~~~if~~e~~~k~~~~----------g~~~y~~~~wn~~d~~i~v~s~i~~~~~~~~~~~--~~~~~~~~r~~ 202 (722)
..++|++.+++|.+|.+++++.. |.-.|-+++..++|+++++.+++-+++... +. .+..++.+|.+
T Consensus 127 L~~LEiv~IV~Fg~EfivRlWSAGC~~rYrG~~GRLrFarkp~cvIDiivi~Asi~vl~~g~q--G~vfatSalrslRFl 204 (654)
T KOG1419|consen 127 LYILEIVMIVFFGLEFIVRLWSAGCCCRYRGWYGRLRFARKPFCVIDIIVIIASIAVLAAGSQ--GNVFATSALRSLRFL 204 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccceeeEEeecCCceEEEEeeeeeeeeEEEecCc--cceeehhhhhhhHHH
Confidence 34579999999999999999843 334588999999999988888553332211 11 02234556666
Q ss_pred hhhHHHHHHhc---hHHHHHHHHH---------HHHHHHhHhhhc-------------cccccccHHHHHHHHHHHHhcC
Q 004951 203 PYIRVVFFILN---IRQLRDTLFV---------LAGMLGTYLNVL-------------GNMVFTSFGTTLYQMFVLFTTS 257 (722)
Q Consensus 203 R~lR~lrli~~---~~~lr~~~~~---------i~~~l~~~~~i~-------------~~~~F~~~~~s~~~lf~l~t~e 257 (722)
++||.+|+=+. ++-++.++.+ .++.+..++.-+ +...|+++.+|+|.--+.+||-
T Consensus 205 QILRmlr~DRrggTWKLLGSvV~aH~~ELiTt~YIGFL~LIfsSflVYLaEKd~~~e~~n~~F~TyADALWWG~ITltTI 284 (654)
T KOG1419|consen 205 QILRMLRMDRRGGTWKLLGSVVYAHSKELITTWYIGFLVLIFSSFLVYLAEKDAQGEGTNDEFPTYADALWWGVITLTTI 284 (654)
T ss_pred HHHHHHHhhccCchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHhhheeEEee
Confidence 66666555432 3333332221 112222222111 5567999999999999999999
Q ss_pred CCCCcchhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004951 258 NNPDVWIPAYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFK 301 (722)
Q Consensus 258 ~w~dvm~~~~~~~~~~~ifFi~~i~i~~f~llnLfiaVi~~~f~ 301 (722)
|+.|. +|..-.++..+..|- +-.+-+..|.-+++-..|.
T Consensus 285 GYGDk-~P~TWlGr~laa~fs----ligiSFFALPAGILGSGfA 323 (654)
T KOG1419|consen 285 GYGDK-TPQTWLGRLLAACFS----LIGISFFALPAGILGSGFA 323 (654)
T ss_pred ccCCc-CcccchhHHHHHHHH----HHHHHHHhcccccccchhh
Confidence 99996 554444444333222 2233455677777777775
No 24
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=98.01 E-value=0.00026 Score=85.86 Aligned_cols=74 Identities=9% Similarity=0.081 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhh------c---------chhhhhcc
Q 004951 423 KFGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIYSY------G---------FENYWRDG 487 (722)
Q Consensus 423 ~f~~~i~~iilln~i~l~~~~~~~~~~~~~~~~~~~~e~~f~~iF~~E~~lKi~a~------g---------~~~y~~~~ 487 (722)
+|+.++.++++.+++.+.++...... .....+.++|.++.++|.+|+++++..- | .++|++.
T Consensus 63 ~Wd~~~~~~~~y~~~~~p~~~~F~~~--~~~~~~~~~d~i~~~~F~iDi~l~f~~ay~d~~~~~lV~d~~~I~~~Yl~~- 139 (823)
T PLN03192 63 WWETLMVVLVAYSAWVYPFEVAFLNA--SPKRGLEIADNVVDLFFAVDIVLTFFVAYIDPRTQLLVRDRKKIAVRYLST- 139 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHeeCC--CCCCCeeeHHHHHHHHHHHHHHhheeEEEEeCCCcEEEeCHHHHHHHHHHH-
Confidence 58888999999998888776544211 1223466789999999999999998632 1 2678754
Q ss_pred ccchhHHHHHHH
Q 004951 488 QNRFDFLVTWVI 499 (722)
Q Consensus 488 wn~fD~~vvi~~ 499 (722)
|-++|++.++..
T Consensus 140 ~f~~Dlis~lP~ 151 (823)
T PLN03192 140 WFLMDVASTIPF 151 (823)
T ss_pred hHHHHHHHHhHH
Confidence 789998866543
No 25
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.66 E-value=0.0014 Score=75.41 Aligned_cols=169 Identities=14% Similarity=0.165 Sum_probs=98.9
Q ss_pred HHHHHHH---HHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHhhhc---Cccc-----c-------------
Q 004951 139 EGITLVI---LIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYL---SPIA-----F------------- 194 (722)
Q Consensus 139 e~~~~~i---f~~e~~~k~~~~g~~~y~~~~wn~~d~~i~v~s~i~~~~~~~~~---~~~~-----~------------- 194 (722)
|.+.+.. ++.+-+-.++..|++.|+++.||++|++.+.+.+..++.-..-. .... +
T Consensus 387 E~li~~wV~G~iw~E~k~lw~~G~~~y~~~~Wn~lDf~m~siyl~s~~lr~~a~~~~~~~~~~~~~R~~W~~~dp~ll~E 466 (822)
T KOG3609|consen 387 EILIYLWVMGLIWEEIKELWRVGRDGYLAFWWNWLDFAMISIYLASFILRAVAWGKREAFDPSSVDRMHWPSFDPSLLAE 466 (822)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhCCCCcHHHHHH
Confidence 5554443 44566667778999999999999999998888877766543311 0000 0
Q ss_pred -ccchhhhhhhhHHHHHHhchHH-------HHHHHHHHHHHHHhHhhh-----------cc-----------------cc
Q 004951 195 -NFLPLRIAPYIRVVFFILNIRQ-------LRDTLFVLAGMLGTYLNV-----------LG-----------------NM 238 (722)
Q Consensus 195 -~~~~~r~~R~lR~lrli~~~~~-------lr~~~~~i~~~l~~~~~i-----------~~-----------------~~ 238 (722)
.+..--++-.+|.+.+....+. +.+.+.-+++.+.-+.-+ .. ..
T Consensus 467 ~lfAiA~V~S~lrl~~i~t~n~~lGPlqISlGrmv~Di~kF~~I~~lvl~aF~iGl~qLy~yy~~~~~~~~~~~~~~~~~ 546 (822)
T KOG3609|consen 467 GLFAIANVLSFLKLFYIFTMNPSLGPLQISLGRMVGDIYKFLFIFVLVLVAFSIGLNQLYDYYLNRKTMKIDQDYTKTTD 546 (822)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhccchHhhhhcchhhcccccccccccc
Confidence 0111223455666666554332 233333222211111100 00 11
Q ss_pred ccccHHHHHHHHHHHH-hcCCCCCcchh--hhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004951 239 VFTSFGTTLYQMFVLF-TTSNNPDVWIP--AYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQ 307 (722)
Q Consensus 239 ~F~~~~~s~~~lf~l~-t~e~w~dvm~~--~~~~~~~~~ifFi~~i~i~~f~llnLfiaVi~~~f~~~~~~~ 307 (722)
.|.++..|+.+||=-+ +..+=.++..+ -.-...+..+-|.+|.++...+++||.||.+.++|++....+
T Consensus 547 ~fsti~eS~~tLFWsiFglv~~~~~~l~~~Hkf~e~ig~~lfG~Y~vi~vIVLLNmLIAMmnnSyQeIeD~A 618 (822)
T KOG3609|consen 547 SFSTIGESSKTLFWSIFGLVVLGSVVLPYKHKFTEFIGEVLFGVYNVILIIVLLNLLIAMMSNSYQEIEDDA 618 (822)
T ss_pred ccccHHHHHHHHHHHHHhcccccceecccchhHHHHHHHHHHHhhheeeHHHHHHHHHHHHHhHHHHHhhcc
Confidence 4999999988877322 22221111221 112445667889999999999999999999999999776553
No 26
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.47 E-value=0.0018 Score=73.88 Aligned_cols=170 Identities=13% Similarity=0.193 Sum_probs=115.3
Q ss_pred chhhhhccccchhHHHHHHHHHHHHHhhcCCCCccccchhhH--HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 004951 480 FENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEW--IRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSL 557 (722)
Q Consensus 480 ~~~y~~~~wn~fD~~vvi~~~i~~i~~~~~~~~~~~~~~~~~--lr~l~~~R~lR~lrl~~~~~~lr~l~~tl~~~~~~l 557 (722)
+++||-+.-|++|.++...++|.+...+. +.+ .+++| --+.-.+-..+++-++..++.+...+..+.....++
T Consensus 588 k~~Y~~~i~Nimew~iyts~li~v~~~~~---~~~--~~~Q~~laa~aV~l~W~nllLmi~~~p~~gIfvvM~~~I~ktf 662 (929)
T KOG0510|consen 588 KRHYFMDIENIMEWFIYTSALITVYPLFF---EIT--AHLQWVLAAFAVLLGWMNLLLMIGRFPVFGIFVVMLEVILKTF 662 (929)
T ss_pred HHHHHhhhHHHHHHHHHhhhhheeehhhh---hhH--HHHHHHHHHHHHHHHHHHHHHHHccCCccceehHHHHHHHHHH
Confidence 37899999999999988877765433222 111 12221 123344556788888888888887777777777777
Q ss_pred HHHHHHHHHHHHHHhhhhHHHhccccccCCCCCCCCccccccccccccCChhhHHHHHHHHHhhcC-HHHHHHHHHhhhC
Q 004951 558 MPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGN-WQVWMQSYKELTG 636 (722)
Q Consensus 558 ~~~~~ll~~~~~ifAiiG~~lF~g~~~~~n~~~~~~~~~~~~y~~~nF~~f~~s~~tLf~i~t~e~-W~~im~~~~~~~g 636 (722)
+..+.+..++++.|++--.-+|+.. ..|.|.+.|.+..|.+|.||+ ....|+.-....+
T Consensus 663 lk~f~vfs~lliaF~lsFYVll~~~--------------------~eFs~p~ms~l~t~~MMiGe~dft~~~~~~~~~~~ 722 (929)
T KOG0510|consen 663 LKSFMVFSILLIAFGLSFYVLLNKS--------------------SEFSNPFMSKLETFVMMIGENDFTKVMFTEEFKRN 722 (929)
T ss_pred HHHHHHHHHHHHHhhhhheeeecCC--------------------CCcCCCcchhhhhHHHhhcccccccccccchhhcC
Confidence 7776666666667776555555543 249999999999999999983 2222222111111
Q ss_pred ----CceeeeehhhHhHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 004951 637 ----TAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELE 674 (722)
Q Consensus 637 ----~~~~~iyFv~f~~i~~~i~lnLfvavi~e~F~~~~~~~ 674 (722)
...+.+-|++|.++..++++||.||+-+.--....+.+
T Consensus 723 ~l~~~v~s~~~f~~F~IfmtIvLMNLLiGLAV~DIq~vqk~A 764 (929)
T KOG0510|consen 723 SLAHPVLSFAIFVLFTIFMTIVLMNLLIGLAVGDIQGVQKHA 764 (929)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 24578889999999999999999999888666654443
No 27
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.46 E-value=0.006 Score=70.01 Aligned_cols=118 Identities=14% Similarity=0.223 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHhccccccCCCCCCCCccccccccccccCChhhHHHHHHHHHhhcCHHHHHHHHH
Q 004951 553 LIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYK 632 (722)
Q Consensus 553 ~~~~l~~~~~ll~~~~~ifAiiG~~lF~g~~~~~n~~~~~~~~~~~~y~~~nF~~f~~s~~tLf~i~t~e~W~~im~~~~ 632 (722)
....++.++.+..++++-||..-.-+|.+-....++.... ...+.-....|+|+.+++++|+.+.+- .++.
T Consensus 539 I~~DL~RF~~IY~Vfl~GFsqAfy~if~~~~~~~~~~~~~---~~~~~m~~~~ds~~~~~l~lf~ftig~------~dl~ 609 (782)
T KOG3676|consen 539 IFGDLFRFLLIYLVFLVGFSQAFYSIFQTCDRDSSPNDKN---VESNPMCNPYDSFSTFLLTLFEFTIGM------GDLE 609 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccc---ccccccCChhhHHHHHHHHHHHHhhhh------hhhh
Confidence 3578889999999999999998888888754432221111 011111234566899999999998763 3332
Q ss_pred hhhCC---ceeeeehhhHhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh
Q 004951 633 ELTGT---AWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEKC 679 (722)
Q Consensus 633 ~~~g~---~~~~iyFv~f~~i~~~i~lnLfvavi~e~F~~~~~~~~~~~~ 679 (722)
..... ....+-|++|.++..++++||+||.+-++|..+.+..+.+..
T Consensus 610 ~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s~~~Wk 659 (782)
T KOG3676|consen 610 ACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQESEKEWK 659 (782)
T ss_pred hcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHH
Confidence 22222 346788999999999999999999999999998777755443
No 28
>KOG3733 consensus Mucolipidin and related proteins (TRML subfamily of transient receptor potential proteins) [Inorganic ion transport and metabolism]
Probab=97.28 E-value=0.0046 Score=65.50 Aligned_cols=128 Identities=18% Similarity=0.283 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhccccccCCCCCCCCccccccccccccCC
Q 004951 528 ARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFND 607 (722)
Q Consensus 528 ~R~lR~lrl~~~~~~lr~l~~tl~~~~~~l~~~~~ll~~~~~ifAiiG~~lF~g~~~~~n~~~~~~~~~~~~y~~~nF~~ 607 (722)
+-.+-++|-+..++....++.|+.+++|+++.+..-..+++.-|..-|.-.-|.. +--|++
T Consensus 385 LVW~GVIRYLgfF~~YNvlIlTl~~alPkVlRFc~ca~mIYlGy~FCGWIVLGPY-------------------HdKFrs 445 (566)
T KOG3733|consen 385 LVWFGVIRYLGFFKTYNVLILTLKKALPKVLRFCCCAAMIYLGYCFCGWIVLGPY-------------------HDKFRS 445 (566)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHhheeeEEecch-------------------HHhhhh
Confidence 4445566667888889999999999999999988777666655554444333321 346888
Q ss_pred hhhHHHHHHHHHhhcCHHHHHHHHHhhhCC---ceeeeehhhHhHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 004951 608 YPNGMVTLFNLLVMGNWQVWMQSYKELTGT---AWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELES 675 (722)
Q Consensus 608 f~~s~~tLf~i~t~e~W~~im~~~~~~~g~---~~~~iyFv~f~~i~~~i~lnLfvavi~e~F~~~~~~~~ 675 (722)
...---.||.+.-|++--...-. +..-+. .++.+|..+|+-+-.+++|+||||+|.++|.....-.+
T Consensus 446 LntvsECLFSLINGDDMFaTFA~-mqqkS~lvWlFsqiYLYSFISLfIYmvLSLFIAlItdaYDTIK~~qq 515 (566)
T KOG3733|consen 446 LNTVSECLFSLINGDDMFATFAT-MQQKSTLVWLFSQIYLYSFISLFIYMVLSLFIALITDAYDTIKAYQQ 515 (566)
T ss_pred HHHHHHHHHHhhCchhHHHHHHH-HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhh
Confidence 87777788988888765443322 222221 22789999999999999999999999999988754433
No 29
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.14 E-value=0.0087 Score=72.02 Aligned_cols=240 Identities=18% Similarity=0.235 Sum_probs=134.3
Q ss_pred hHHHHHHHccccch---HHHHHHHHHHHHHHHH--HhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhc-----
Q 004951 410 PFSEKLKAFIRSTK---FGYMISIILIVNLVAV--IVETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIYSYG----- 479 (722)
Q Consensus 410 ~~r~~~~~iv~~~~---f~~~i~~iilln~i~l--~~~~~~~~~~~~~~~~~~~~e~~f~~iF~~E~~lKi~a~g----- 479 (722)
++.++.+.+...|. +-+++..+.++.+.+- .+++.+ .+ ..++++=++.+.-+.+|-+=+++.-+
T Consensus 779 ~~~~r~~~FysAPIvkFw~~~l~yi~FL~lftYvlLv~~~~--~P----s~~Ew~~~~~iftl~~E~vRq~~~se~~~l~ 852 (1381)
T KOG3614|consen 779 GKLRRIRAFYSAPIVKFWLNVLSYIAFLLLFTYVLLVDFQP--SP----SMWEWILFAWIFTLFLEEVRQIFISESGLLP 852 (1381)
T ss_pred hHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHheeccCC--CC----CccchhHHHHHHHHHHHHHHHHhcCCCcchh
Confidence 35556667777663 3333333333332222 222221 11 23445445555557788887777432
Q ss_pred --chhhhhccccchhHHHHHHHHHHHHHhhcCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 004951 480 --FENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSL 557 (722)
Q Consensus 480 --~~~y~~~~wn~fD~~vvi~~~i~~i~~~~~~~~~~~~~~~~~lr~l~~~R~lR~lrl~~~~~~lr~l~~tl~~~~~~l 557 (722)
.+-||.+.||..|.+.+..-+++.++-+....... ...-++-+--++=.+|++-.+...+.+---+..+.+-++.+
T Consensus 853 ~kv~v~f~d~wN~~d~~ai~~F~vG~~~Rl~~~~~~~--~GRvIl~~d~i~~t~rLl~~f~V~~~lGPyI~mv~kMm~dm 930 (1381)
T KOG3614|consen 853 QKVRVYFADFWNLIDLLAILLFLVGPVLRLLPIDSIY--SGRVILCFDFILFTLRLLHYFTVSKQLGPYIVMVKKMMKDM 930 (1381)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhheeEecCcccee--cceeeeeehHHHHHHHHhhheeeccccCchhHHHHHHHHHH
Confidence 25699999999999999988888776654422211 11111122234455677777777887777776777778888
Q ss_pred HHHHHHHHHHHHHHhhhhHHHhccccccCCCCCCCCccccccccccccCC-hhhHHHHHHHHHhhcCHHHHHHHHHh---
Q 004951 558 MPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFND-YPNGMVTLFNLLVMGNWQVWMQSYKE--- 633 (722)
Q Consensus 558 ~~~~~ll~~~~~ifAiiG~~lF~g~~~~~n~~~~~~~~~~~~y~~~nF~~-f~~s~~tLf~i~t~e~W~~im~~~~~--- 633 (722)
+.+++++.+.++.|++.--.+ .++. +... +.=|++ |..-.+.+| |+-..+-++.+..
T Consensus 931 f~flfllaV~LlsfGVarQaI----l~P~----------e~~~-w~l~R~i~y~PYlmif----GeV~a~eID~~~~e~~ 991 (1381)
T KOG3614|consen 931 FFFLFLLAVVLLSFGVARQAI----LRPD----------EPRH-WWLFRNIFYWPYLMLF----GEVPADEIDTCTCEKS 991 (1381)
T ss_pred HHHHHHHHHHHHHhhhhhhhh----cCCC----------CCch-HHHHHHHHHHHHHHHh----ccccHhhhhhhccccc
Confidence 888888877788877642111 1110 0000 011111 222233333 3333222222221
Q ss_pred ----------h-----h--CCceeeeehhhHhHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 004951 634 ----------L-----T--GTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESS 676 (722)
Q Consensus 634 ----------~-----~--g~~~~~iyFv~f~~i~~~i~lnLfvavi~e~F~~~~~~~~~ 676 (722)
. | |++...+..+.|.++.+++++||.||++-..|....+...+
T Consensus 992 ~~~~p~~~~~s~~~~~c~pg~wl~plLl~~yLLv~nILL~NLLIA~Fn~tf~~v~~~sd~ 1051 (1381)
T KOG3614|consen 992 FCGEPLRYESSPGNPSCPPGSWLTPLLLVIYLLVTNILLVNLLIAMFSYTFGNVQENSDQ 1051 (1381)
T ss_pred ccCCCcccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 1 1 23346677788999999999999999998888776554443
No 30
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=97.14 E-value=0.017 Score=70.31 Aligned_cols=40 Identities=5% Similarity=0.144 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHhc-----------c----cccccccccccchhhHHHHH
Q 004951 138 YEGITLVILIIHTFFPITYE-----------G----SPIFWKSTYTRLKVLCLLIL 178 (722)
Q Consensus 138 ~e~~~~~if~~e~~~k~~~~-----------g----~~~y~~~~wn~~d~~i~v~s 178 (722)
++.++.++|++|++++.... . .+.|+| .|-++|++-++..
T Consensus 97 ~d~i~~~~F~iDi~l~f~~ay~d~~~~~lV~d~~~I~~~Yl~-~~f~~Dlis~lP~ 151 (823)
T PLN03192 97 ADNVVDLFFAVDIVLTFFVAYIDPRTQLLVRDRKKIAVRYLS-TWFLMDVASTIPF 151 (823)
T ss_pred HHHHHHHHHHHHHHhheeEEEEeCCCcEEEeCHHHHHHHHHH-HhHHHHHHHHhHH
Confidence 59999999999999876421 1 134664 4778997766655
No 31
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.86 E-value=0.045 Score=63.81 Aligned_cols=130 Identities=12% Similarity=0.141 Sum_probs=79.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhcccccccc-------hhhHHHHHHHHHHHHHHHHHHHHHHhhhc-----------c----
Q 004951 423 KFGYMISIILIVNLVAVIVETTLDIQES-------SLQSVWQEVEFVFGWIYVLEMALKIYSYG-----------F---- 480 (722)
Q Consensus 423 ~f~~~i~~iilln~i~l~~~~~~~~~~~-------~~~~~~~~~e~~f~~iF~~E~~lKi~a~g-----------~---- 480 (722)
.|++++.+..+.++++..++.+.-..+. .....+.+++.+.-++|+++++++...-= +
T Consensus 79 ~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~~d~~~~~~l~v~d~ivD~fflvdIvL~Frtayv~~~s~elV~dpk~IA 158 (727)
T KOG0498|consen 79 VWNKFFLLLVIYAAFVDPLFFYFLLIDDERKCIDGKLAAPLTVLDTIVDIFFLVDIVLNFRTAYVDPSSYELVDDPKKIA 158 (727)
T ss_pred HHHHHHHHHHHHHHHhccceeeEEecccccccccccccCceeeHHHHHHHHHHHHHHHhheEEEECCCCceeeeCHHHHH
Confidence 4677777766666665554432211110 02345677889999999999999987321 1
Q ss_pred hhhhhccccchhHHHHHHHHHHHHHhhcC--CCCccccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 004951 481 ENYWRDGQNRFDFLVTWVIVIGETITLAS--PNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPS 556 (722)
Q Consensus 481 ~~y~~~~wn~fD~~vvi~~~i~~i~~~~~--~~~~~~~~~~~~lr~l~~~R~lR~lrl~~~~~~lr~l~~tl~~~~~~ 556 (722)
.+|++ .|=++|++.++.. +.++.... ..... ........++.+.|+.|+.|+++.++++.........+.+.
T Consensus 159 ~rYl~-twFiiDlis~lP~--~~i~~~~~~~~~~~~-~~~~~l~~il~~~rL~Rl~Rv~~l~~r~~k~~~~v~~~awa 232 (727)
T KOG0498|consen 159 KRYLK-TWFLIDLISTLPF--DQIVVLVVIGSTSLA-LESTILVGILLLQRLPRLRRVIPLFARLEKDTGFVYETAWA 232 (727)
T ss_pred HHHHh-hhHHHHHHHhcCh--hhheeeeeecccchh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 57888 7999999877641 22211111 00000 01124567788888888888888888888776666644443
No 32
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=96.64 E-value=0.11 Score=59.80 Aligned_cols=149 Identities=11% Similarity=0.166 Sum_probs=95.6
Q ss_pred hcccccccccccccchhhHHHHHHHHHHHHhhhcCccccc----cchhhh-hhhhHHHHHHhchH-------HHHHHHHH
Q 004951 156 YEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFN----FLPLRI-APYIRVVFFILNIR-------QLRDTLFV 223 (722)
Q Consensus 156 ~~g~~~y~~~~wn~~d~~i~v~s~i~~~~~~~~~~~~~~~----~~~~r~-~R~lR~lrli~~~~-------~lr~~~~~ 223 (722)
+..++.|+-+.=|+++.+++..++|....... ..... ..++-+ +-+.+.+.++...+ ++-.++++
T Consensus 585 fqqk~~Y~~~i~Nimew~iyts~li~v~~~~~---~~~~~~Q~~laa~aV~l~W~nllLmi~~~p~~gIfvvM~~~I~kt 661 (929)
T KOG0510|consen 585 FQQKRHYFMDIENIMEWFIYTSALITVYPLFF---EITAHLQWVLAAFAVLLGWMNLLLMIGRFPVFGIFVVMLEVILKT 661 (929)
T ss_pred HHHHHHHHhhhHHHHHHHHHhhhhheeehhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHccCCccceehHHHHHHHHH
Confidence 45667799999999999988887764332221 00001 222222 34555556665433 23345555
Q ss_pred HHHHHHhHhhhc------------cccccccHHHHHHHHHHHHhcCC-CCCcc-hhhhc-----cCchhHHHHHHHHHHH
Q 004951 224 LAGMLGTYLNVL------------GNMVFTSFGTTLYQMFVLFTTSN-NPDVW-IPAYK-----ASRWYCLFFVLYVLIG 284 (722)
Q Consensus 224 i~~~l~~~~~i~------------~~~~F~~~~~s~~~lf~l~t~e~-w~dvm-~~~~~-----~~~~~~ifFi~~i~i~ 284 (722)
+++++..+...+ ....|.|++-|++..|+++-.|+ .+.++ .+.+. ....+.+-|+.|+++.
T Consensus 662 flk~f~vfs~lliaF~lsFYVll~~~~eFs~p~ms~l~t~~MMiGe~dft~~~~~~~~~~~~l~~~v~s~~~f~~F~Ifm 741 (929)
T KOG0510|consen 662 FLKSFMVFSILLIAFGLSFYVLLNKSSEFSNPFMSKLETFVMMIGENDFTKVMFTEEFKRNSLAHPVLSFAIFVLFTIFM 741 (929)
T ss_pred HHHHHHHHHHHHHHhhhhheeeecCCCCcCCCcchhhhhHHHhhcccccccccccchhhcCcccchHHHHHHHHHHHHHH
Confidence 566555443221 45569999999999999999884 44233 34443 2234557889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004951 285 VYFVTNLILAVVYDSFKSQLAKQ 307 (722)
Q Consensus 285 ~f~llnLfiaVi~~~f~~~~~~~ 307 (722)
+.++|||.+|.-+..-++..++.
T Consensus 742 tIvLMNLLiGLAV~DIq~vqk~A 764 (929)
T KOG0510|consen 742 TIVLMNLLIGLAVGDIQGVQKHA 764 (929)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHH
Confidence 99999999999988777655543
No 33
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.72 E-value=0.5 Score=57.64 Aligned_cols=41 Identities=22% Similarity=0.346 Sum_probs=32.7
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004951 269 ASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQVS 309 (722)
Q Consensus 269 ~~~~~~ifFi~~i~i~~f~llnLfiaVi~~~f~~~~~~~~~ 309 (722)
.++...+-.++|+++.+.+++||.||+.-+.|.+..++.-+
T Consensus 1011 g~wl~plLl~~yLLv~nILL~NLLIA~Fn~tf~~v~~~sd~ 1051 (1381)
T KOG3614|consen 1011 GSWLTPLLLVIYLLVTNILLVNLLIAMFSYTFGNVQENSDQ 1051 (1381)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34555667889999999999999999999999876655433
No 34
>KOG3533 consensus Inositol 1,4,5-trisphosphate receptor [Signal transduction mechanisms]
Probab=95.58 E-value=0.48 Score=57.04 Aligned_cols=145 Identities=13% Similarity=0.157 Sum_probs=76.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhccccccC-----CC--------------------
Q 004951 534 IRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAG-----NA-------------------- 588 (722)
Q Consensus 534 lrl~~~~~~lr~l~~tl~~~~~~l~~~~~ll~~~~~ifAiiG~~lF~g~~~~~-----n~-------------------- 588 (722)
+-++-+=..+..++.++-+-..++.--.++-+++.|.|+|+|...|....+-. |.
T Consensus 2399 FDliyrEETL~NVIkSVTRNgrSIvlTa~LALILvYlFSIiGflffkdDF~leVD~l~n~~~~~~~l~~~~~~~~~~~tc 2478 (2706)
T KOG3533|consen 2399 FDLIYREETLQNVIKSVTRNGRSIVLTALLALILVYLFSILGFLFFKDDFYLEVDRLENDSAVPSPLSATISSGIPSETC 2478 (2706)
T ss_pred HHHHHHHHHHHHHHHHHhcCCceeHHHHHHHHHHHHHHHHHHHHhcccceEEEecccccCCCCCCccccccccCCccccC
Confidence 33334444555555555555555655556666778999999999999875311 10
Q ss_pred -CCCCCcccccccc-ccccCChhhHHHHHHHHHh---------hcCHHHHHHHHHhhhC-CceeeeehhhHhHHHHHHHH
Q 004951 589 -KLEETDLADDDYL-LFNFNDYPNGMVTLFNLLV---------MGNWQVWMQSYKELTG-TAWTLAYFVSFYLITVLLLL 656 (722)
Q Consensus 589 -~~~~~~~~~~~y~-~~nF~~f~~s~~tLf~i~t---------~e~W~~im~~~~~~~g-~~~~~iyFv~f~~i~~~i~l 656 (722)
+.++.+....+-+ ...=+.--.|-=||+-+.. |+|-.+++..-....+ -.|-.+|=..|+++..+|+|
T Consensus 2479 ~~enC~~~~p~~~~~~~~~e~kersCdtLlMCIvt~lnqGLRnGGGiGDvLR~Psk~E~lF~aRV~YDllFffivIiIVL 2558 (2706)
T KOG3533|consen 2479 PSENCPGLQPSEKPDDNDDEKKERSCETLLMCIVTTLNQGLRNGGGIGDVLRNPSKWEDLFIARVAYDLLFFFIVIIIVL 2558 (2706)
T ss_pred CCCCCCCCCCCCCCCcccccchhhhhhHHHHHHHHHHhhhcccCCChhhhhcCCCcccchhHHHHHHHHHHHHHHHHHHH
Confidence 0000000000000 0112223334444443332 2333333321110000 12234566788889999999
Q ss_pred HHHHHHHHHHHHHHHhHhhhhh
Q 004951 657 NLVIAFVLEAFFAEMELESSEK 678 (722)
Q Consensus 657 nLfvavi~e~F~~~~~~~~~~~ 678 (722)
||.-|||++.|..-..+.+++.
T Consensus 2559 NLIFGVIIDTFaDLRsEKqkKE 2580 (2706)
T KOG3533|consen 2559 NLIFGVIIDTFADLRSEKQKKE 2580 (2706)
T ss_pred HHHHHhhhhhHHHHHhhhhHHH
Confidence 9999999999998765444433
No 35
>KOG3733 consensus Mucolipidin and related proteins (TRML subfamily of transient receptor potential proteins) [Inorganic ion transport and metabolism]
Probab=94.18 E-value=1.2 Score=47.92 Aligned_cols=63 Identities=21% Similarity=0.393 Sum_probs=46.1
Q ss_pred ccccHHHHHHHHHHHHhcCCCCCcchhhh----ccCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004951 239 VFTSFGTTLYQMFVLFTTSNNPDVWIPAY----KASRW----YCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLA 305 (722)
Q Consensus 239 ~F~~~~~s~~~lf~l~t~e~w~dvm~~~~----~~~~~----~~ifFi~~i~i~~f~llnLfiaVi~~~f~~~~~ 305 (722)
.|.|+...--+||.++. +|-|...+ ..+.+ +-+|.-+|+-+--|.+++||||+|.++|...++
T Consensus 442 KFrsLntvsECLFSLIN----GDDMFaTFA~mqqkS~lvWlFsqiYLYSFISLfIYmvLSLFIAlItdaYDTIK~ 512 (566)
T KOG3733|consen 442 KFRSLNTVSECLFSLIN----GDDMFATFATMQQKSTLVWLFSQIYLYSFISLFIYMVLSLFIALITDAYDTIKA 512 (566)
T ss_pred hhhhHHHHHHHHHHhhC----chhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence 48888887778887776 56564333 12222 346888888888999999999999999976543
No 36
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=92.44 E-value=0.12 Score=41.21 Aligned_cols=64 Identities=30% Similarity=0.484 Sum_probs=48.4
Q ss_pred HHHHHhhhhccccccCCHHHHHHHHHHhhhhcCCCCCChHHHHHHhhhccCCCccccChhhHHhH
Q 004951 319 LGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADL 383 (722)
Q Consensus 319 l~~af~~L~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~f~~l 383 (722)
+.++|+.+|.+++|.++.++....+..+..... +....+..+.++...|.++++.++.+||...
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~ 65 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMS-DEESDEMIDQIFREFDTDGDGRISFDEFLNF 65 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHST-HHHHHHHHHHHHHHHTTTSSSSEEHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhccccc-HHHHHHHHHHHHHHhCCCCcCCCcHHHHhcc
Confidence 568899999999999999997777666643211 1223345556699999999999999998764
No 37
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=92.29 E-value=1.1 Score=37.90 Aligned_cols=75 Identities=21% Similarity=0.214 Sum_probs=56.1
Q ss_pred HHHHHHHHHhhhhc--cccccCCHHHHHHHHHHhhhhcCCCCCChHHHHHHhhhccCCCccccChhhHHhHHHHHHh
Q 004951 315 RRRTLGKAFNLIDN--YNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIAL 389 (722)
Q Consensus 315 rr~~l~~af~~L~~--~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~f~~l~~~~~~ 389 (722)
+.+.+.++|..++. +++|.++.++....++...........+..+.+.++...|.++++.++.++|..++...++
T Consensus 6 ~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~~ 82 (88)
T cd00213 6 AIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLAV 82 (88)
T ss_pred HHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHHH
Confidence 34458889999999 7999999998776655321111112356788999999999999999999999888766543
No 38
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=92.26 E-value=3.9 Score=48.18 Aligned_cols=40 Identities=13% Similarity=0.300 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHH-----------hccc----ccccccccccchhhHHHH
Q 004951 137 VYEGITLVILIIHTFFPIT-----------YEGS----PIFWKSTYTRLKVLCLLI 177 (722)
Q Consensus 137 ~~e~~~~~if~~e~~~k~~-----------~~g~----~~y~~~~wn~~d~~i~v~ 177 (722)
+++.+.-++|+++++++.. ..++ ..|+| .|=++|++.++.
T Consensus 121 v~d~ivD~fflvdIvL~Frtayv~~~s~elV~dpk~IA~rYl~-twFiiDlis~lP 175 (727)
T KOG0498|consen 121 VLDTIVDIFFLVDIVLNFRTAYVDPSSYELVDDPKKIAKRYLK-TWFLIDLISTLP 175 (727)
T ss_pred eHHHHHHHHHHHHHHHhheEEEECCCCceeeeCHHHHHHHHHh-hhHHHHHHHhcC
Confidence 3599999999999999764 1222 23888 888899876654
No 39
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=92.07 E-value=0.58 Score=39.97 Aligned_cols=68 Identities=24% Similarity=0.273 Sum_probs=55.1
Q ss_pred HHHHHHHhhhhc-cccccCCHHHHHHHHHH-hhhhcCCCCCCh-HHHHHHhhhccCCCccccChhhHHhHHHHHHh
Q 004951 317 RTLGKAFNLIDN-YNVGFLNKEQCIKLFEE-LNKYRTLPNISR-EEFELIFDELDDTHDFKINLDEFADLCNAIAL 389 (722)
Q Consensus 317 ~~l~~af~~L~~-~~~~~l~~~~~~~~~~~-l~~~~~~~~~~~-~~~~~~~~~ld~~~~~~~~~~~f~~l~~~~~~ 389 (722)
..+.++|+..+. ++++.++.++...+++. +. ..++. ++.+.+...+|.++++.++-+||..+...++.
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg-----~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~~ 78 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLP-----HLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELAK 78 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhh-----hhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHH
Confidence 357889999999 89999999987777665 42 23555 88999999999999999999999887665543
No 40
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=89.88 E-value=2.1 Score=36.91 Aligned_cols=67 Identities=18% Similarity=0.221 Sum_probs=54.5
Q ss_pred HHHHHHHHhhhhccccccCCHHHHHHHHHHhhhhcCCCCCChHHHHHHhhhccCCCccccChhhHHhHHHHHHh
Q 004951 316 RRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIAL 389 (722)
Q Consensus 316 r~~l~~af~~L~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~f~~l~~~~~~ 389 (722)
...+.++|+.++.+++|.++.++....++.. ..+.++.+.++...|.++++.++.++|..+...++.
T Consensus 9 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~-------~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~ 75 (96)
T smart00027 9 KAKYEQIFRSLDKNQDGTVTGAQAKPILLKS-------GLPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYR 75 (96)
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHHHHc-------CCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHH
Confidence 3467889999999999999998876665432 357788889999999999999999999887776554
No 41
>PRK10537 voltage-gated potassium channel; Provisional
Probab=89.73 E-value=5.1 Score=44.20 Aligned_cols=102 Identities=10% Similarity=0.132 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhccccccCCCCCCCCccccccccc
Q 004951 523 RYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLL 602 (722)
Q Consensus 523 r~l~~~R~lR~lrl~~~~~~lr~l~~tl~~~~~~l~~~~~ll~~~~~ifAiiG~~lF~g~~~~~n~~~~~~~~~~~~y~~ 602 (722)
+.++.+-++++..++...+.+.....++.. + +.++.+..+..|+++|...+++...
T Consensus 108 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----l--~~~~~~~~l~~~~~~g~~~~~~~f~------------------ 163 (393)
T PRK10537 108 KFLIGYCIVLLVALLIYRRDFDRSSLAAGT----L--FAVISITSLLFYSTFGALYLGDGFS------------------ 163 (393)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHH----H--HHHHHHHHHHHHHHHHHHHHccccC------------------
Confidence 445666677777777766666555322221 1 2223334456788888887765321
Q ss_pred cccCChhhHHHHHHHHHhhcCHHHHHHHHHhhhC-CceeeeehhhHhHHHHHHH
Q 004951 603 FNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTG-TAWTLAYFVSFYLITVLLL 655 (722)
Q Consensus 603 ~nF~~f~~s~~tLf~i~t~e~W~~im~~~~~~~g-~~~~~iyFv~f~~i~~~i~ 655 (722)
..+.++..|++..+..+|+-|..++ .+ +..++++-++++++|..++
T Consensus 164 ~~~~s~~dA~y~svvt~tTvGyGdi-------~p~t~~grl~~i~~ii~Gi~vf 210 (393)
T PRK10537 164 PPIESLSTAFYFSIVTMSTVGYGDI-------VPVSESARLFTISVIILGITVF 210 (393)
T ss_pred cCCCCHHHHHHhhheeeecccCCCC-------CCCCHHHHHHHHHHHHHHHHHH
Confidence 1366888888766666666555554 22 2334555555555554433
No 42
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=89.72 E-value=1.5 Score=37.30 Aligned_cols=70 Identities=17% Similarity=0.242 Sum_probs=53.5
Q ss_pred HHHHHHhhhh-ccccc-cCCHHHHHHHHHH-hhhhcCCCCCChHHHHHHhhhccCCCccccChhhHHhHHHHHH
Q 004951 318 TLGKAFNLID-NYNVG-FLNKEQCIKLFEE-LNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIA 388 (722)
Q Consensus 318 ~l~~af~~L~-~~~~~-~l~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~f~~l~~~~~ 388 (722)
.+.++|+..+ ++++| .++.++...+++. +.... ....++++.+.+...+|.++++.++-++|..+...++
T Consensus 9 ~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~l-g~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~ 81 (88)
T cd05027 9 ALIDVFHQYSGREGDKHKLKKSELKELINNELSHFL-EEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVT 81 (88)
T ss_pred HHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHh-cCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 4678999998 68899 5999987777654 11111 2345778899999999999999999999988766554
No 43
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=88.61 E-value=1.2 Score=42.21 Aligned_cols=65 Identities=28% Similarity=0.478 Sum_probs=54.9
Q ss_pred HHHHHHHHHhhhhccccccCCHHHHHHHHHHhhhhcCCCCCChHHHHHHhhhccCCCccccChhhHHhHH
Q 004951 315 RRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLC 384 (722)
Q Consensus 315 rr~~l~~af~~L~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~f~~l~ 384 (722)
.++.+..||+..|.+++|.++.......++.+ -.+++.++.+.++...+.+++|.++.++|.++.
T Consensus 90 ~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~l-----ge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~ 154 (160)
T COG5126 90 KEEELREAFKLFDKDHDGYISIGELRRVLKSL-----GERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLI 154 (160)
T ss_pred cHHHHHHHHHHhCCCCCceecHHHHHHHHHhh-----cccCCHHHHHHHHHhcCCCCCceEeHHHHHHHH
Confidence 35678999999999999999998866655544 356889999999999999999999999987653
No 44
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=88.24 E-value=2.2 Score=33.55 Aligned_cols=63 Identities=24% Similarity=0.367 Sum_probs=49.6
Q ss_pred HHHHhhhhccccccCCHHHHHHHHHHhhhhcCCCCCChHHHHHHhhhccCCCccccChhhHHhHHHHHHh
Q 004951 320 GKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIAL 389 (722)
Q Consensus 320 ~~af~~L~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~f~~l~~~~~~ 389 (722)
+++|+.++.+++|.++.++....+..+ ..+.++.+.++...|.++++.++.++|..+...+..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~-------g~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~ 64 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKS-------GLPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLIAL 64 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHc-------CCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHH
Confidence 357888999999999998766555433 246778889999999999999999999887765543
No 45
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=88.11 E-value=0.4 Score=53.01 Aligned_cols=46 Identities=11% Similarity=0.275 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchh-hhhccccchhHHHHHHHH
Q 004951 455 VWQEVEFVFGWIYVLEMALKIYSYGFEN-YWRDGQNRFDFLVTWVIV 500 (722)
Q Consensus 455 ~~~~~e~~f~~iF~~E~~lKi~a~g~~~-y~~~~wn~fD~~vvi~~~ 500 (722)
.-+.+|..|.++|.+-+.+|.+|..-+- ||-.-..+.|++-+..++
T Consensus 163 ~tqqidlafnifflvyffirfiaasdklwf~lemys~vdfftippsf 209 (1103)
T KOG1420|consen 163 FTQQIDLAFNIFFLVYFFIRFIAASDKLWFWLEMYSVVDFFTIPPSF 209 (1103)
T ss_pred hHHHhhhHhhHHHHHHHHHHHhhcccceeeeeehhhheeeeecCchh
Confidence 3467899999999999999999875321 344445556666554443
No 46
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=87.97 E-value=2.7 Score=36.10 Aligned_cols=71 Identities=20% Similarity=0.251 Sum_probs=51.7
Q ss_pred HHHHHHhhhh-cccccc-CCHHHHHHHHHHhhhhcCCCCCChHHHHHHhhhccCCCccccChhhHHhHHHHHH
Q 004951 318 TLGKAFNLID-NYNVGF-LNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIA 388 (722)
Q Consensus 318 ~l~~af~~L~-~~~~~~-l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~f~~l~~~~~ 388 (722)
.+.++|+.-+ +++++. ++.++....+..........+.++.+.+.+...+|.++++.++.+||..+...++
T Consensus 11 ~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 11 TLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 4567888888 567774 9998877766542111111234677899999999999999999999988776554
No 47
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=87.80 E-value=4 Score=34.85 Aligned_cols=71 Identities=23% Similarity=0.361 Sum_probs=54.0
Q ss_pred HHHHHHHhhhh-cccccc-CCHHHHHHHHHH-hhhhcCCCCCChHHHHHHhhhccCCCccccChhhHHhHHHHHH
Q 004951 317 RTLGKAFNLID-NYNVGF-LNKEQCIKLFEE-LNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIA 388 (722)
Q Consensus 317 ~~l~~af~~L~-~~~~~~-l~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~f~~l~~~~~ 388 (722)
..+.++|+..+ .+++|. ++.++....++. +.... ....+..+.+.++...|.++++.++.++|..+...++
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~-~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFL-DAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHc-cCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 34788999997 889994 999987777653 42211 1135678899999999999999999999987766544
No 48
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=87.39 E-value=38 Score=39.98 Aligned_cols=63 Identities=19% Similarity=0.449 Sum_probs=45.1
Q ss_pred cccHHHHHHHHHHHHhcCCCCCcchhhhccC---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004951 240 FTSFGTTLYQMFVLFTTSNNPDVWIPAYKAS---RWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAK 306 (722)
Q Consensus 240 F~~~~~s~~~lf~l~t~e~w~dvm~~~~~~~---~~~~ifFi~~i~i~~f~llnLfiaVi~~~f~~~~~~ 306 (722)
.+++..+++++|...- +..| ++..... ...-+-|++|+++.+..++||+||..-|+|.+.-+.
T Consensus 588 ~ds~~~~~l~lf~fti--g~~d--l~~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~ 653 (782)
T KOG3676|consen 588 YDSFSTFLLTLFEFTI--GMGD--LEACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQE 653 (782)
T ss_pred hhHHHHHHHHHHHHhh--hhhh--hhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Confidence 4557778888887654 2223 2333322 445678999999999999999999999999865544
No 49
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=86.45 E-value=3.9 Score=35.12 Aligned_cols=72 Identities=21% Similarity=0.252 Sum_probs=53.3
Q ss_pred HHHHHHHhhhhc-cc-cccCCHHHHHHHHHHhhhhcCCCCCChHHHHHHhhhccCCCccccChhhHHhHHHHHH
Q 004951 317 RTLGKAFNLIDN-YN-VGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIA 388 (722)
Q Consensus 317 ~~l~~af~~L~~-~~-~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~f~~l~~~~~ 388 (722)
..+..+|+..+. ++ +|.++.++....++..-......+.+.++.+.++...|.++++.++.++|..+....+
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~ 81 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLS 81 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 347889999987 76 6999999877766531110001245678889999999999999999999988766544
No 50
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=84.67 E-value=4.9 Score=34.26 Aligned_cols=71 Identities=15% Similarity=0.256 Sum_probs=50.4
Q ss_pred HHHHHHhh-hhccccc-cCCHHHHHHHHHHh-hhhcCCCCCChHHHHHHhhhccCCCccccChhhHHhHHHHHHh
Q 004951 318 TLGKAFNL-IDNYNVG-FLNKEQCIKLFEEL-NKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIAL 389 (722)
Q Consensus 318 ~l~~af~~-L~~~~~~-~l~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~f~~l~~~~~~ 389 (722)
.+..+|+. .++++++ .++.++...++... .... ..+.++.+.+.++..+|.++++.++-+||..+...++.
T Consensus 10 ~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~-~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~~ 83 (89)
T cd05023 10 SLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFT-KNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLAV 83 (89)
T ss_pred HHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhh-cCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHH
Confidence 45677877 5565654 89998877665443 1111 12456788999999999999999999999887665543
No 51
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=84.01 E-value=5.5 Score=37.46 Aligned_cols=64 Identities=27% Similarity=0.430 Sum_probs=55.2
Q ss_pred HHHHHHHHhhhhccccccCCHHHHHHHHHHhhhhcCCCCCChHHHHHHhhhccCCCccccChhhHHhHH
Q 004951 316 RRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLC 384 (722)
Q Consensus 316 r~~l~~af~~L~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~f~~l~ 384 (722)
...+.+||+..|.+.+|-++.........++ .+.+++++...+..+.|.++++.++.++|..+.
T Consensus 105 ~eEi~~afrl~D~D~~Gkis~~~lkrvakeL-----genltD~El~eMIeEAd~d~dgevneeEF~~im 168 (172)
T KOG0028|consen 105 KEEIKKAFRLFDDDKTGKISQRNLKRVAKEL-----GENLTDEELMEMIEEADRDGDGEVNEEEFIRIM 168 (172)
T ss_pred HHHHHHHHHcccccCCCCcCHHHHHHHHHHh-----CccccHHHHHHHHHHhcccccccccHHHHHHHH
Confidence 3457889999999999999998877777777 578999999999999999999999999997653
No 52
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=82.70 E-value=4.6 Score=30.34 Aligned_cols=60 Identities=30% Similarity=0.470 Sum_probs=46.7
Q ss_pred HHHHHhhhhccccccCCHHHHHHHHHHhhhhcCCCCCChHHHHHHhhhccCCCccccChhhHHhH
Q 004951 319 LGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADL 383 (722)
Q Consensus 319 l~~af~~L~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~f~~l 383 (722)
+.++|+..+.+.+|.++.++....++.+ .+..+.+....++...+.++++.++.++|..+
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~ 61 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSL-----GEGLSEEEIDEMIREVDKDGDGKIDFEEFLEL 61 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHh-----CCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHH
Confidence 3467888888899999998877665544 25567778888999999988999998888654
No 53
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=81.77 E-value=5.4 Score=37.53 Aligned_cols=63 Identities=27% Similarity=0.452 Sum_probs=52.3
Q ss_pred HHHHHHHHhhhhccccccCCHHHHHHHHHHhhhhcCCCCCChHHHHHHhhhccCCCccccChhhHHhH
Q 004951 316 RRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADL 383 (722)
Q Consensus 316 r~~l~~af~~L~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~f~~l 383 (722)
.+.+.+||+..+.+++|+++.++....+..+ ..+.+.++.+.+....|.++++.++-++|...
T Consensus 84 ~~el~eaF~~fD~d~~G~Is~~el~~~l~~l-----g~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~ 146 (151)
T KOG0027|consen 84 SEELKEAFRVFDKDGDGFISASELKKVLTSL-----GEKLTDEECKEMIREVDVDGDGKVNFEEFVKM 146 (151)
T ss_pred HHHHHHHHHHHccCCCCcCcHHHHHHHHHHh-----CCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHH
Confidence 4578899999999999999999877766655 24566889999999999999999988777654
No 54
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=81.16 E-value=6 Score=37.23 Aligned_cols=66 Identities=29% Similarity=0.379 Sum_probs=55.3
Q ss_pred HHHHHHHhhhhccccccCCHHHHHHHHHHhhhhcCCCCCChHHHHHHhhhccCCCccccChhhHHhHHHHH
Q 004951 317 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAI 387 (722)
Q Consensus 317 ~~l~~af~~L~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~f~~l~~~~ 387 (722)
..+.++|+..+.+++|.++.++....++.+ ....+..+...+....|.++++.++.++|..++...
T Consensus 8 ~el~~~F~~fD~d~~G~i~~~el~~~lr~l-----g~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~ 73 (151)
T KOG0027|consen 8 LELKEAFQLFDKDGDGKISVEELGAVLRSL-----GQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKL 73 (151)
T ss_pred HHHHHHHHHHCCCCCCcccHHHHHHHHHHc-----CCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhh
Confidence 457899999999999999998877666655 244678899999999999999999999998886543
No 55
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=79.62 E-value=1.1 Score=49.83 Aligned_cols=43 Identities=9% Similarity=0.226 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcccc-cccccccccchhhHHHHHHH
Q 004951 138 YEGITLVILIIHTFFPITYEGSP-IFWKSTYTRLKVLCLLILVA 180 (722)
Q Consensus 138 ~e~~~~~if~~e~~~k~~~~g~~-~y~~~~wn~~d~~i~v~s~i 180 (722)
+++.|-++|.+-+.++.++..-+ -||-.-..++|++.+=.+++
T Consensus 167 idlafnifflvyffirfiaasdklwf~lemys~vdfftippsfv 210 (1103)
T KOG1420|consen 167 IDLAFNIFFLVYFFIRFIAASDKLWFWLEMYSVVDFFTIPPSFV 210 (1103)
T ss_pred hhhHhhHHHHHHHHHHHhhcccceeeeeehhhheeeeecCchhe
Confidence 46677777766666665554433 35566666666655544443
No 56
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=79.26 E-value=3 Score=50.51 Aligned_cols=139 Identities=16% Similarity=0.291 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhccccccCCCCCCCCccccccccccccC
Q 004951 527 LARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFN 606 (722)
Q Consensus 527 ~~R~lR~lrl~~~~~~lr~l~~tl~~~~~~l~~~~~ll~~~~~ifAiiG~~lF~g~~~~~n~~~~~~~~~~~~y~~~nF~ 606 (722)
.|-+..++-+.--++.+|.++.++..-.+.+.--.+++.++.|.|.++..+.|.--.....++... ...=|
T Consensus 4789 fffaahlldiamgfktlrtilssvthngkqlvltvgllavvvylytvvafnffrkfynksed~d~p---------dmkcd 4859 (5019)
T KOG2243|consen 4789 FFFAAHLLDIAMGFKTLRTILSSVTHNGKQLVLTVGLLAVVVYLYTVVAFNFFRKFYNKSEDDDEP---------DMKCD 4859 (5019)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHhccCCeEEEEeehhHHHHHHHHHHHHHHHHHHHhcccccCCCC---------Cccch
Confidence 344556666666777777777777666666655667778888999999999997644332221111 11223
Q ss_pred ChhhHHHHHHHHHh----hcCHHHHHHHHHhhhC---CceeeeehhhHhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh
Q 004951 607 DYPNGMVTLFNLLV----MGNWQVWMQSYKELTG---TAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEKC 679 (722)
Q Consensus 607 ~f~~s~~tLf~i~t----~e~W~~im~~~~~~~g---~~~~~iyFv~f~~i~~~i~lnLfvavi~e~F~~~~~~~~~~~~ 679 (722)
|....+ ||.+-+ +.|-.+-.+ +..| ..+-.+|=+.|+++..+|++.+.-++|+++|-+..++.++-++
T Consensus 4860 dmltcy--lfhmyvgvragggigdeie---dpagd~yeiyriifditffffvivillaiiqgliidafgelrdqqeqvke 4934 (5019)
T KOG2243|consen 4860 DMLTCY--LFHMYVGVRAGGGIGDEIE---DPAGDEYEIYRIIFDITFFFFVIVILLAIIQGLIIDAFGELRDQQEQVKE 4934 (5019)
T ss_pred hhHHHH--hhheeeeeecCCccccccc---CCCCCcceeeeeeehhhHHHHHHHHHHHHHHHHhHHHHHhhHhHHHHHHh
Confidence 332222 232222 222222111 1122 2345677788999999999999999999999998766655443
No 57
>PTZ00183 centrin; Provisional
Probab=79.12 E-value=7.1 Score=36.47 Aligned_cols=63 Identities=29% Similarity=0.394 Sum_probs=51.0
Q ss_pred HHHHHHHhhhhccccccCCHHHHHHHHHHhhhhcCCCCCChHHHHHHhhhccCCCccccChhhHHhHH
Q 004951 317 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLC 384 (722)
Q Consensus 317 ~~l~~af~~L~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~f~~l~ 384 (722)
..+..+|+.++.+++|.++.++....+... .+.++..+...++..++.++++.++.++|..+.
T Consensus 90 ~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~-----~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 152 (158)
T PTZ00183 90 EEILKAFRLFDDDKTGKISLKNLKRVAKEL-----GETITDEELQEMIDEADRNGDGEISEEEFYRIM 152 (158)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHh-----CCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 346788999999999999998866655443 256888899999999999999999999987654
No 58
>PRK10537 voltage-gated potassium channel; Provisional
Probab=78.65 E-value=35 Score=37.72 Aligned_cols=42 Identities=24% Similarity=0.448 Sum_probs=29.1
Q ss_pred ccccHHHHHHHHHHHHhcCCCCCcchhhhccCchhHHHHHHHHHHH
Q 004951 239 VFTSFGTTLYQMFVLFTTSNNPDVWIPAYKASRWYCLFFVLYVLIG 284 (722)
Q Consensus 239 ~F~~~~~s~~~lf~l~t~e~w~dvm~~~~~~~~~~~ifFi~~i~i~ 284 (722)
.+.++.+|++..++.+||-|+.|+ .|.-.. .-+|-+++++.|
T Consensus 165 ~~~s~~dA~y~svvt~tTvGyGdi-~p~t~~---grl~~i~~ii~G 206 (393)
T PRK10537 165 PIESLSTAFYFSIVTMSTVGYGDI-VPVSES---ARLFTISVIILG 206 (393)
T ss_pred CCCCHHHHHHhhheeeecccCCCC-CCCCHH---HHHHHHHHHHHH
Confidence 467999999999999999999997 343222 334444444444
No 59
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=75.23 E-value=5.9 Score=29.86 Aligned_cols=35 Identities=17% Similarity=0.353 Sum_probs=27.2
Q ss_pred CCCChHHHHHHhhhccCCCccccChhhHHhHHHHH
Q 004951 353 PNISREEFELIFDELDDTHDFKINLDEFADLCNAI 387 (722)
Q Consensus 353 ~~~~~~~~~~~~~~ld~~~~~~~~~~~f~~l~~~~ 387 (722)
-++++.....+|+..|.++++.++.+||.+.+..+
T Consensus 16 I~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 16 IEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp ----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 56788889999999999999999999999888754
No 60
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=74.57 E-value=7.7 Score=43.59 Aligned_cols=74 Identities=16% Similarity=0.302 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhh--cc------------hhhhhccc
Q 004951 423 KFGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIYSY--GF------------ENYWRDGQ 488 (722)
Q Consensus 423 ~f~~~i~~iilln~i~l~~~~~~~~~~~~~~~~~~~~e~~f~~iF~~E~~lKi~a~--g~------------~~y~~~~w 488 (722)
.|+|.|.++.+-..+.+...-... ........|..+|.+.-+||.++++|.+-.- |+ ..|+++ |
T Consensus 219 ~WDWvIL~LTFYTAimVPyNvaFK-nk~~~~vs~lvvDSiVDVIF~vDIvLNFHTTFVGPgGEVvsdPkvIRmNYlKs-W 296 (971)
T KOG0501|consen 219 IWDWVILILTFYTAIMVPYNVAFK-NKQRNNVSWLVVDSIVDVIFFVDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKS-W 296 (971)
T ss_pred HHHHHHHHHHHHHHheeeeeeeec-ccccCceeEEEecchhhhhhhhhhhhhcceeeecCCCceecChhHHhHHHHHH-H
Confidence 466766655554443332211110 1111223455677888888999999877532 33 467765 7
Q ss_pred cchhHHHHHH
Q 004951 489 NRFDFLVTWV 498 (722)
Q Consensus 489 n~fD~~vvi~ 498 (722)
-++|++..+.
T Consensus 297 FvIDLLSCLP 306 (971)
T KOG0501|consen 297 FVIDLLSCLP 306 (971)
T ss_pred HHHHHHhccc
Confidence 7888875543
No 61
>PTZ00184 calmodulin; Provisional
Probab=73.85 E-value=11 Score=34.62 Aligned_cols=61 Identities=25% Similarity=0.429 Sum_probs=49.4
Q ss_pred HHHHHHhhhhccccccCCHHHHHHHHHHhhhhcCCCCCChHHHHHHhhhccCCCccccChhhHHhH
Q 004951 318 TLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADL 383 (722)
Q Consensus 318 ~l~~af~~L~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~f~~l 383 (722)
.+..+|+..+.+++|.++.++....+... .+..+..+.+.++...|.++++.++.++|..+
T Consensus 85 ~~~~~F~~~D~~~~g~i~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 145 (149)
T PTZ00184 85 EIKEAFKVFDRDGNGFISAAELRHVMTNL-----GEKLTDEEVDEMIREADVDGDGQINYEEFVKM 145 (149)
T ss_pred HHHHHHHhhCCCCCCeEeHHHHHHHHHHH-----CCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHH
Confidence 35677899999999999999877666544 34578888999999999999999999988655
No 62
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=73.30 E-value=16 Score=32.78 Aligned_cols=62 Identities=23% Similarity=0.271 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhhhhccccccCCHHHHHHHHHHhhhhcCCCCCChHHHHHHhhhccCCCccccChhhHHhHH
Q 004951 314 MRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLC 384 (722)
Q Consensus 314 ~rr~~l~~af~~L~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~f~~l~ 384 (722)
..+..+..+|..+|.+++|.++.++..... ..........++...|.++++.|+.+||...+
T Consensus 45 ~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~---------l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 45 MCKDPVGWMFNQLDGNYDGKLSHHELAPIR---------LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHHCCCCCCcCCHHHHHHHH---------ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 445678999999999999999998754332 12234566788999999999999999997765
No 63
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=72.53 E-value=18 Score=34.51 Aligned_cols=67 Identities=24% Similarity=0.388 Sum_probs=52.0
Q ss_pred HHHHHHHHhhhhccccccCCHHHHHHHHHHhhhhcCCCCCChHHHHHHhhhccCCCccccChhhHHhHHHHHH
Q 004951 316 RRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIA 388 (722)
Q Consensus 316 r~~l~~af~~L~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~f~~l~~~~~ 388 (722)
-+.+.+||+.++.++.|.++.......++.+ .-..+.++...++...+. +.+.++-++|...+....
T Consensus 19 i~~lkeaF~l~D~d~~G~I~~~el~~ilr~l-----g~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~ 85 (160)
T COG5126 19 IQELKEAFQLFDRDSDGLIDRNELGKILRSL-----GFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKL 85 (160)
T ss_pred HHHHHHHHHHhCcCCCCCCcHHHHHHHHHHc-----CCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHh
Confidence 3567899999999999999998866655533 123567788889999998 888999888887766543
No 64
>PTZ00184 calmodulin; Provisional
Probab=72.44 E-value=17 Score=33.30 Aligned_cols=64 Identities=22% Similarity=0.351 Sum_probs=50.4
Q ss_pred HHHHHHHhhhhccccccCCHHHHHHHHHHhhhhcCCCCCChHHHHHHhhhccCCCccccChhhHHhHHH
Q 004951 317 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCN 385 (722)
Q Consensus 317 ~~l~~af~~L~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~f~~l~~ 385 (722)
+.+.++|+.++.++.|.++.++....+..+. ...+.++...++...|.++++.++.++|.....
T Consensus 11 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~-----~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 74 (149)
T PTZ00184 11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLG-----QNPTEAELQDMINEVDADGNGTIDFPEFLTLMA 74 (149)
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHhC-----CCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHH
Confidence 4567889999999999999999776655442 234567888999999999999999999876543
No 65
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=71.66 E-value=29 Score=29.34 Aligned_cols=60 Identities=20% Similarity=0.287 Sum_probs=41.6
Q ss_pred ccccCCHHHHHHHHHHhhhhcCCCCCChHHHHHHhhhccCCCccccChhhHHhHHHHHHh
Q 004951 330 NVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIAL 389 (722)
Q Consensus 330 ~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~f~~l~~~~~~ 389 (722)
.++.++.+....++...-........++.+.+.++...|.++++.++.++|..+...+.+
T Consensus 23 ~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~~ 82 (88)
T cd05030 23 HPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVGV 82 (88)
T ss_pred CcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHH
Confidence 367888887776664221110012234788999999999999999999999887765543
No 66
>PTZ00183 centrin; Provisional
Probab=70.66 E-value=20 Score=33.41 Aligned_cols=64 Identities=22% Similarity=0.409 Sum_probs=51.2
Q ss_pred HHHHHHHhhhhccccccCCHHHHHHHHHHhhhhcCCCCCChHHHHHHhhhccCCCccccChhhHHhHHH
Q 004951 317 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCN 385 (722)
Q Consensus 317 ~~l~~af~~L~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~f~~l~~ 385 (722)
+.+.++|..++.+++|.++.++....++.+. ...+......++...|.++++.++.++|.....
T Consensus 17 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g-----~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~ 80 (158)
T PTZ00183 17 KEIREAFDLFDTDGSGTIDPKELKVAMRSLG-----FEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMT 80 (158)
T ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhC-----CCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHH
Confidence 4577889999999999999999777665442 234567888999999999999999999977643
No 67
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=68.36 E-value=15 Score=36.24 Aligned_cols=67 Identities=28% Similarity=0.506 Sum_probs=51.4
Q ss_pred HHHHHhhhhccccccCCHHHHHHHHHHhhhhcCC------CCCChHHHHHHhhhccCCCccccChhhHHhHHH
Q 004951 319 LGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTL------PNISREEFELIFDELDDTHDFKINLDEFADLCN 385 (722)
Q Consensus 319 l~~af~~L~~~~~~~l~~~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~~ld~~~~~~~~~~~f~~l~~ 385 (722)
+.-+|++-|.+++|+++++++.+.++.+-..... +.-..+..+.++..+|.++|+.++.++|.+.+.
T Consensus 102 l~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~ 174 (193)
T KOG0044|consen 102 LKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCK 174 (193)
T ss_pred hhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhh
Confidence 4467999999999999999988877666543221 122345667899999999999999999977654
No 68
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=68.17 E-value=27 Score=29.59 Aligned_cols=68 Identities=19% Similarity=0.305 Sum_probs=49.2
Q ss_pred HHHHHhhhhc-cc-cccCCHHHHHHHHHHhhhhcCCCCCChHHHHHHhhhccCCCccccChhhHHhHHHHHH
Q 004951 319 LGKAFNLIDN-YN-VGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIA 388 (722)
Q Consensus 319 l~~af~~L~~-~~-~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~f~~l~~~~~ 388 (722)
+.+.|++-+. ++ ++.++.++....++.... ...+.+.++.+.++..+|.++++.++.++|..+...++
T Consensus 12 ~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~--lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 12 LVAIFHKYSGREGDKNTLSKKELKELIQKELT--IGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred HHHHHHHHHccCCCCCEECHHHHHHHHHHHHh--cCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 4455666555 34 789999887666543111 13457889999999999999999999999987766554
No 69
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=67.90 E-value=17 Score=34.15 Aligned_cols=66 Identities=32% Similarity=0.481 Sum_probs=44.3
Q ss_pred HHHHHHHHhhhhccccccCCHHHHHHHHHHhhhhcCCCCCChHHHH---------------------------------H
Q 004951 316 RRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFE---------------------------------L 362 (722)
Q Consensus 316 r~~l~~af~~L~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~---------------------------------~ 362 (722)
=+++.+||.++|.+++|+++++.....+..+.+. .+.++.+ .
T Consensus 31 IqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~-----~~d~elDaM~~Ea~gPINft~FLTmfGekL~gtdpe~~I~~ 105 (171)
T KOG0031|consen 31 IQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKI-----ASDEELDAMMKEAPGPINFTVFLTMFGEKLNGTDPEEVILN 105 (171)
T ss_pred HHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCC-----CCHHHHHHHHHhCCCCeeHHHHHHHHHHHhcCCCHHHHHHH
Confidence 4567899999999999999998766655555331 2222222 3
Q ss_pred HhhhccCCCccccChhhHHhHHHH
Q 004951 363 IFDELDDTHDFKINLDEFADLCNA 386 (722)
Q Consensus 363 ~~~~ld~~~~~~~~~~~f~~l~~~ 386 (722)
.+...|+++++.++.+.+.++...
T Consensus 106 AF~~FD~~~~G~I~~d~lre~Ltt 129 (171)
T KOG0031|consen 106 AFKTFDDEGSGKIDEDYLRELLTT 129 (171)
T ss_pred HHHhcCccCCCccCHHHHHHHHHH
Confidence 344567777888888777666544
No 70
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=66.99 E-value=29 Score=29.75 Aligned_cols=56 Identities=23% Similarity=0.440 Sum_probs=38.1
Q ss_pred ccCCHHHHHHHH-HHhhhhcCCCCCChHHHHHHhhhccCCCccccChhhHHhHHHHHH
Q 004951 332 GFLNKEQCIKLF-EELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIA 388 (722)
Q Consensus 332 ~~l~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~f~~l~~~~~ 388 (722)
+.+++.+...++ +++..... ....+...+.+...+|.++|+.++-.||..+...++
T Consensus 22 ~tLsk~Elk~Ll~~Elp~~l~-~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 22 NYLNRDDLQKLMEKEFSEFLK-NQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred CcCCHHHHHHHHHHHhHHHHc-CCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 345565555544 33333222 233677888999999999999999999988766554
No 71
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=66.70 E-value=24 Score=38.36 Aligned_cols=63 Identities=22% Similarity=0.340 Sum_probs=51.9
Q ss_pred HHHHHHHHhhhhccccccCCHHHHHHHHHHhhhhcCCCCCChHHHHHHhhhccCCCccccChhhHHhH
Q 004951 316 RRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADL 383 (722)
Q Consensus 316 r~~l~~af~~L~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~f~~l 383 (722)
+..+.+-|+-+|.+.++.++.++....++++ ..+++.++.+.+++..|++++..++.+|+.+.
T Consensus 81 E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~-----gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~ 143 (463)
T KOG0036|consen 81 ELELYRIFQSIDLEHDGKIDPNEIWRYLKDL-----GIQLSDEKAAKFFEHMDKDGKATIDLEEWRDH 143 (463)
T ss_pred HHHHHHHHhhhccccCCccCHHHHHHHHHHh-----CCccCHHHHHHHHHHhccCCCeeeccHHHHhh
Confidence 4456778899999999999998766555544 35689999999999999999999999998764
No 72
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=66.31 E-value=86 Score=35.10 Aligned_cols=47 Identities=21% Similarity=0.557 Sum_probs=34.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHh----hhcc---------hhhhhccccchhHHHHH
Q 004951 451 SLQSVWQEVEFVFGWIYVLEMALKIY----SYGF---------ENYWRDGQNRFDFLVTW 497 (722)
Q Consensus 451 ~~~~~~~~~e~~f~~iF~~E~~lKi~----a~g~---------~~y~~~~wn~fD~~vvi 497 (722)
.+-..|-.+|+.|-.+|+++++++.- -.|. +.|+++.--.+|.+.++
T Consensus 26 ~y~~~wl~ld~~~D~vyllDi~v~~R~gyleqGllV~~~~Kl~~hY~~s~~f~lD~l~li 85 (536)
T KOG0500|consen 26 SYLENWLPLDYLFDFVYLLDIIVRSRTGYLEQGLLVKDTSKLRKHYVHSTQFKLDVLSLI 85 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhcCeeehhhHHHHHHHHHhhhhhhhhhhhc
Confidence 34456778999999999999998765 2353 67777777677766443
No 73
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=65.74 E-value=5.1 Score=26.32 Aligned_cols=26 Identities=31% Similarity=0.576 Sum_probs=21.9
Q ss_pred HHHHhhhccCCCccccChhhHHhHHH
Q 004951 360 FELIFDELDDTHDFKINLDEFADLCN 385 (722)
Q Consensus 360 ~~~~~~~ld~~~~~~~~~~~f~~l~~ 385 (722)
.+.++...|.+++|.++.+||.+.+.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 45678899999999999999987653
No 74
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=65.37 E-value=13 Score=27.87 Aligned_cols=49 Identities=29% Similarity=0.436 Sum_probs=36.0
Q ss_pred cccCCHHHHHHHHHHhhhhcCCCC-CChHHHHHHhhhccCCCccccChhhHHhHH
Q 004951 331 VGFLNKEQCIKLFEELNKYRTLPN-ISREEFELIFDELDDTHDFKINLDEFADLC 384 (722)
Q Consensus 331 ~~~l~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~ld~~~~~~~~~~~f~~l~ 384 (722)
+|.++.++....+..+ ..+ +++++.+.++...|.++++.++.+||....
T Consensus 2 ~G~i~~~~~~~~l~~~-----g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~ 51 (54)
T PF13833_consen 2 DGKITREEFRRALSKL-----GIKDLSEEEVDRLFREFDTDGDGYISFDEFISMM 51 (54)
T ss_dssp SSEEEHHHHHHHHHHT-----TSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHH
T ss_pred cCEECHHHHHHHHHHh-----CCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHH
Confidence 3556666655444322 123 889999999999999999999999987653
No 75
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=64.83 E-value=49 Score=37.73 Aligned_cols=46 Identities=20% Similarity=0.373 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHh----hh-cc---------hhhhhccccchhHHHHHH
Q 004951 453 QSVWQEVEFVFGWIYVLEMALKIY----SY-GF---------ENYWRDGQNRFDFLVTWV 498 (722)
Q Consensus 453 ~~~~~~~e~~f~~iF~~E~~lKi~----a~-g~---------~~y~~~~wn~fD~~vvi~ 498 (722)
.+.|-++|++|-+||++++++--- .. |. +.|.++.--.+|++.++.
T Consensus 260 ~~~Wli~Dy~cDiIYllDmlf~q~Rl~fvrgG~~ik~kndtrk~Yl~sr~FklDllsiLP 319 (815)
T KOG0499|consen 260 IHYWLIADYICDIIYLLDMLFIQPRLQFVRGGDIIKDKNDTRKHYLTSRKFKLDLLSILP 319 (815)
T ss_pred chhhhhHHHHhhHHHHHHHhhhhhhheeeeCceEEEechHHHHHHHHhhhhhhhHHhhhh
Confidence 356788999999999999984211 11 22 788888887888876543
No 76
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=60.21 E-value=19 Score=35.26 Aligned_cols=66 Identities=26% Similarity=0.422 Sum_probs=47.1
Q ss_pred HHHHHHHhhhhccccccCCHHHHHHHHHHhhhhcCCCCCChHH----HHHHhhhccCCCccccChhhHHhHH
Q 004951 317 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREE----FELIFDELDDTHDFKINLDEFADLC 384 (722)
Q Consensus 317 ~~l~~af~~L~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~~ld~~~~~~~~~~~f~~l~ 384 (722)
.++.=||++.|.+++|+++.++....++.+-... ...+.+. .+.++.+.|.+++++|+.+||.+..
T Consensus 104 ~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~--~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v 173 (187)
T KOG0034|consen 104 EKLRFAFRVYDLDGDGFISREELKQILRMMVGEN--DDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVV 173 (187)
T ss_pred HHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccC--CcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 4677899999999999999998766555543211 1112333 3456778999999999999987653
No 77
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=59.41 E-value=92 Score=34.86 Aligned_cols=71 Identities=15% Similarity=0.096 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-------------cccccccccccccchhhHHHHHHHHHHHHhhhcCccccccchhhhh
Q 004951 136 LVYEGITLVILIIHTFFPITY-------------EGSPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIA 202 (722)
Q Consensus 136 ~~~e~~~~~if~~e~~~k~~~-------------~g~~~y~~~~wn~~d~~i~v~s~i~~~~~~~~~~~~~~~~~~~r~~ 202 (722)
+.+++++-++|.++++++... .-++.|+++..=.+|++.++.. |++ .... ......|..
T Consensus 32 l~ld~~~D~vyllDi~v~~R~gyleqGllV~~~~Kl~~hY~~s~~f~lD~l~liP~--D~l--~~~~----~~~~~~r~n 103 (536)
T KOG0500|consen 32 LPLDYLFDFVYLLDIIVRSRTGYLEQGLLVKDTSKLRKHYVHSTQFKLDVLSLIPL--DLL--LFKD----GSASLERLN 103 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHhcCeeehhhHHHHHHHHHhhhhhhhhhhhcch--hHH--hhcC----CcchHHHHH
Confidence 456999999999999986541 1235567666666665554443 221 1111 133445667
Q ss_pred hhhHHHHHHhch
Q 004951 203 PYIRVVFFILNI 214 (722)
Q Consensus 203 R~lR~lrli~~~ 214 (722)
|.+|.+|+....
T Consensus 104 Rllk~yRl~~F~ 115 (536)
T KOG0500|consen 104 RLLKIYRLFEFF 115 (536)
T ss_pred HHHHHHHHHHHH
Confidence 777777776644
No 78
>PF06512 Na_trans_assoc: Sodium ion transport-associated; InterPro: IPR010526 Members of this entry contain a region found exclusively in eukaryotic sodium channels or their subunits, many of which are voltage-gated. Members very often also contain between one and four copies of IPR005821 from INTERPRO and, less often, one copy of IPR000048 from INTERPRO.; GO: 0005248 voltage-gated sodium channel activity, 0006814 sodium ion transport, 0001518 voltage-gated sodium channel complex
Probab=58.22 E-value=2.1 Score=43.77 Aligned_cols=24 Identities=8% Similarity=0.141 Sum_probs=21.2
Q ss_pred chHHHHHHHccccchHHHHHHHHH
Q 004951 409 SPFSEKLKAFIRSTKFGYMISIIL 432 (722)
Q Consensus 409 ~~~r~~~~~iv~~~~f~~~i~~ii 432 (722)
..+|+.|+++|+|+||+.+|+++|
T Consensus 216 ~~~R~~c~~iVeh~~FEtfIifmI 239 (239)
T PF06512_consen 216 WNLRKTCYRIVEHKWFETFIIFMI 239 (239)
T ss_pred HHHHhhheeeecccchhheeeeeC
Confidence 457999999999999999998765
No 79
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=55.49 E-value=3.7e+02 Score=31.08 Aligned_cols=42 Identities=19% Similarity=0.382 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHH---HHh-----------cccccccccccccchhhHHHH
Q 004951 136 LVYEGITLVILIIHTFFP---ITY-----------EGSPIFWKSTYTRLKVLCLLI 177 (722)
Q Consensus 136 ~~~e~~~~~if~~e~~~k---~~~-----------~g~~~y~~~~wn~~d~~i~v~ 177 (722)
++.|++|-+++.+++++- +.+ ...+.|.++..=.+|+.-++.
T Consensus 264 li~Dy~cDiIYllDmlf~q~Rl~fvrgG~~ik~kndtrk~Yl~sr~FklDllsiLP 319 (815)
T KOG0499|consen 264 LIADYICDIIYLLDMLFIQPRLQFVRGGDIIKDKNDTRKHYLTSRKFKLDLLSILP 319 (815)
T ss_pred hhHHHHhhHHHHHHHhhhhhhheeeeCceEEEechHHHHHHHHhhhhhhhHHhhhh
Confidence 456999999999999861 111 123568888777777655444
No 80
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=53.05 E-value=42 Score=29.51 Aligned_cols=62 Identities=21% Similarity=0.373 Sum_probs=47.0
Q ss_pred HHHHHHHHhhhhccccccCCHHHHHHHHHHhhhhcCCCCCChHHHHHHhhhccCCCccccChhhHHhHHH
Q 004951 316 RRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCN 385 (722)
Q Consensus 316 r~~l~~af~~L~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~f~~l~~ 385 (722)
++.....|+.++. ++|.++.++....+. ..+++.+....++...|.++++.++.+||.--..
T Consensus 9 ~~~y~~~F~~l~~-~~g~isg~~a~~~f~-------~S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 9 KQKYDQIFQSLDP-QDGKISGDQAREFFM-------KSGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp HHHHHHHHHCTSS-STTEEEHHHHHHHHH-------HTTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCCeEeHHHHHHHHH-------HcCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHH
Confidence 4456677888875 568898888665543 2467889999999999999999999999965433
No 81
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=50.47 E-value=19 Score=23.61 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=22.0
Q ss_pred HHHHHhhhhccccccCCHHHHHHHHHH
Q 004951 319 LGKAFNLIDNYNVGFLNKEQCIKLFEE 345 (722)
Q Consensus 319 l~~af~~L~~~~~~~l~~~~~~~~~~~ 345 (722)
+.++|+..|.+++|.++.++....++.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 567899999999999999887665543
No 82
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=47.63 E-value=1.2e+02 Score=24.78 Aligned_cols=57 Identities=28% Similarity=0.377 Sum_probs=35.1
Q ss_pred ccccHHHHHHHHHHHHhcCCCCCcchhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004951 239 VFTSFGTTLYQMFVLFTTSNNPDVWIPAYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSF 300 (722)
Q Consensus 239 ~F~~~~~s~~~lf~l~t~e~w~dvm~~~~~~~~~~~ifFi~~i~i~~f~llnLfiaVi~~~f 300 (722)
.-.++.+|++--+..+||-|++|+ .|. +++.-++-+.+ .+....++.++++.+.+-+
T Consensus 21 ~~~~~~da~yfs~~t~tTvGyGDi-~p~---t~~gr~~~~~~-~~~G~~~~~~~~~~~~~~l 77 (79)
T PF07885_consen 21 EKWSFIDALYFSFVTITTVGYGDI-VPQ---TPAGRIFTIIY-MLIGIFLFALFLSVLASVL 77 (79)
T ss_dssp STTSHHHHHHHHHHHHTT---SSS-STS---SHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHhcccCCCc-cCC---ccchHHHHHHH-HHHHHHHHHHHHHHHHHHh
Confidence 466899999999999999999996 343 33333444343 4444566677777666544
No 83
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=46.76 E-value=1.4e+02 Score=32.82 Aligned_cols=73 Identities=25% Similarity=0.320 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhhhhccccccCCHHHHHHHHHHhhhhcCCCCCChHHHHHHhhhccCCCccccChhhHHhHHHHH
Q 004951 314 MRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAI 387 (722)
Q Consensus 314 ~rr~~l~~af~~L~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~f~~l~~~~ 387 (722)
+-+..+...|+.+|.+..|.++.++.....+-+.++- ...+++++...+-..+|-.+|+.++..||.+-....
T Consensus 544 r~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~-~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 544 RNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHM-NGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred hchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhc-CCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhh
Confidence 3456678889999999999999888665544444443 456889999999999999999999999997765543
No 84
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=46.13 E-value=2.6e+02 Score=30.43 Aligned_cols=20 Identities=20% Similarity=0.378 Sum_probs=10.2
Q ss_pred hhhhhhhhhhHHHHHHHHhh
Q 004951 694 RVGTKTRSQKVDVLLHHMLS 713 (722)
Q Consensus 694 ~~~~k~r~~~~~~l~~~~~~ 713 (722)
+...|.|+...+.+.++|..
T Consensus 239 eVKsr~Rq~~re~a~~rm~~ 258 (363)
T COG1377 239 EVKSRIRQMQREIARRRMMS 258 (363)
T ss_pred hhhHHHHHHHHHHHHHHHHh
Confidence 34444555555555556543
No 85
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=45.72 E-value=74 Score=34.78 Aligned_cols=65 Identities=25% Similarity=0.378 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhhhhccccccCCHHHHHHHHHHhhhhcCCCCCChHHHHHHhhhccCCCccccChhhHHh
Q 004951 314 MRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFAD 382 (722)
Q Consensus 314 ~rr~~l~~af~~L~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~f~~ 382 (722)
+|+...+.-|+.+|.++.+.++..+..+.+..+. .|+...+-...+++..|.+.++..|-++|..
T Consensus 11 er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~----~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~ 75 (463)
T KOG0036|consen 11 ERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLD----HPKPNYEAAKMLFSAMDANRDGRVDYSEFKR 75 (463)
T ss_pred HHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcC----CCCCchHHHHHHHHhcccCcCCcccHHHHHH
Confidence 3444566778999999999999988665555443 2344555566666676766677676666644
No 86
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=43.18 E-value=1.2e+02 Score=33.38 Aligned_cols=79 Identities=24% Similarity=0.361 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhhhhccccccCCHHHHHHHHHHhhhhcC-----CCC---------------------------------
Q 004951 313 RMRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRT-----LPN--------------------------------- 354 (722)
Q Consensus 313 ~~rr~~l~~af~~L~~~~~~~l~~~~~~~~~~~l~~~~~-----~~~--------------------------------- 354 (722)
...+..+.++|+..|.++.|.++..+|..-++.+-+..- .|+
T Consensus 460 ~s~~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slv 539 (631)
T KOG0377|consen 460 RSHRSDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLV 539 (631)
T ss_pred HhhhhHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHH
Confidence 334667889999999999999988887665555433210 000
Q ss_pred ----CChHHHHHHhhhccCCCccccChhhHHhHHHHHHhhh
Q 004951 355 ----ISREEFELIFDELDDTHDFKINLDEFADLCNAIALRF 391 (722)
Q Consensus 355 ----~~~~~~~~~~~~ld~~~~~~~~~~~f~~l~~~~~~~~ 391 (722)
-.++..+.+|..+|.++.+.++.+||.+.++.+....
T Consensus 540 etLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~ 580 (631)
T KOG0377|consen 540 ETLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHM 580 (631)
T ss_pred HHHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhc
Confidence 0223455677888999999999999998888766543
No 87
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=42.75 E-value=1.3e+02 Score=33.31 Aligned_cols=53 Identities=30% Similarity=0.412 Sum_probs=43.0
Q ss_pred HHHHHHHHhhhhccccccCCHHHHHHHHHHhhhhcCCCCCChHHHHHHhhhccCCCccccChhhHHhHHHH
Q 004951 316 RRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNA 386 (722)
Q Consensus 316 r~~l~~af~~L~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~f~~l~~~ 386 (722)
++.+..+|+..|.+++|.++.++... .+.++..+|.+++|.++.+||...+..
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~~------------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWLG------------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHHH------------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 45678899999999999999987421 356788999999999999999886643
No 88
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=41.47 E-value=22 Score=23.32 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=20.7
Q ss_pred HHHHhhhccCCCccccChhhHHhHHH
Q 004951 360 FELIFDELDDTHDFKINLDEFADLCN 385 (722)
Q Consensus 360 ~~~~~~~ld~~~~~~~~~~~f~~l~~ 385 (722)
.+.+|...|.++++.++.+|+..+..
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 45678889999999999999877654
No 89
>PLN02964 phosphatidylserine decarboxylase
Probab=41.07 E-value=79 Score=37.18 Aligned_cols=64 Identities=19% Similarity=0.228 Sum_probs=51.1
Q ss_pred HHHHHHhhhhccccccCCHHHHHHHHHHhhhhcCCCCCChHHHHHHhhhccCCCccccChhhHHhHHHH
Q 004951 318 TLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNA 386 (722)
Q Consensus 318 ~l~~af~~L~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~f~~l~~~ 386 (722)
.+.++|+..|.++++.++.++...++..+. ...+.++...++...|.++++.++.+|+.++...
T Consensus 180 fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg-----~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 180 FARRILAIVDYDEDGQLSFSEFSDLIKAFG-----NLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHHhCCCCCCeEcHHHHHHHHHHhc-----cCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 356777888999999999998777766542 2356778999999999999999999998876543
No 90
>PF14658 EF-hand_9: EF-hand domain
Probab=40.20 E-value=72 Score=25.56 Aligned_cols=58 Identities=21% Similarity=0.344 Sum_probs=45.1
Q ss_pred HHhhhhccccccCCHHHHHHHHHHhhhhcCCCCCChHHHHHHhhhccCCCc-cccChhhHHhH
Q 004951 322 AFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHD-FKINLDEFADL 383 (722)
Q Consensus 322 af~~L~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~~~~-~~~~~~~f~~l 383 (722)
+|++-|.++.|.+...+....++.+.. +..+.++.+.+..++|.++. +.++.+.|..+
T Consensus 3 ~F~~fD~~~tG~V~v~~l~~~Lra~~~----~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~i 61 (66)
T PF14658_consen 3 AFDAFDTQKTGRVPVSDLITYLRAVTG----RSPEESELQDLINELDPEGRDGSVNFDTFLAI 61 (66)
T ss_pred chhhcCCcCCceEeHHHHHHHHHHHcC----CCCcHHHHHHHHHHhCCCCCCceEeHHHHHHH
Confidence 577788888898888887777766632 34567789999999999887 88888877543
No 91
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=39.28 E-value=31 Score=21.69 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=18.9
Q ss_pred HHHHHhhhhccccccCCHHHHHH
Q 004951 319 LGKAFNLIDNYNVGFLNKEQCIK 341 (722)
Q Consensus 319 l~~af~~L~~~~~~~l~~~~~~~ 341 (722)
+.++|+.+|.+++|.++.++..+
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~ 23 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQR 23 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHH
Confidence 35688999999999999987654
No 92
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=38.70 E-value=86 Score=26.74 Aligned_cols=29 Identities=21% Similarity=0.360 Sum_probs=19.5
Q ss_pred eeeehhhHhHHHHHHHHHHHHHHHHHHHH
Q 004951 640 TLAYFVSFYLITVLLLLNLVIAFVLEAFF 668 (722)
Q Consensus 640 ~~iyFv~f~~i~~~i~lnLfvavi~e~F~ 668 (722)
+...|.+|..+..+++|=++.+-|.+.=.
T Consensus 14 ~K~~~FA~L~i~~FiILLIi~~~IW~~~r 42 (121)
T PF10669_consen 14 TKIMFFAFLFIVVFIILLIITKSIWHDSR 42 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 44556677777777777777777776433
No 93
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=36.84 E-value=3.8e+02 Score=29.05 Aligned_cols=19 Identities=32% Similarity=0.223 Sum_probs=8.3
Q ss_pred hhhHhHHHHHHHHHHHHHH
Q 004951 644 FVSFYLITVLLLLNLVIAF 662 (722)
Q Consensus 644 Fv~f~~i~~~i~lnLfvav 662 (722)
-.++.++....++-+++|+
T Consensus 180 ~~~~~l~~~~~~~~~via~ 198 (342)
T TIGR01404 180 ELLKLLILVCLGFFLVVGL 198 (342)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 94
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=34.19 E-value=1.3e+02 Score=32.42 Aligned_cols=66 Identities=14% Similarity=0.122 Sum_probs=40.9
Q ss_pred ccccCChhhHHHHHHHHHhhcCHHHHHHHHHhhhCCceeeeehhhHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 004951 602 LFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEME 672 (722)
Q Consensus 602 ~~nF~~f~~s~~tLf~i~t~e~W~~im~~~~~~~g~~~~~iyFv~f~~i~~~i~lnLfvavi~e~F~~~~~ 672 (722)
..|.++|..||+--.+..|+=|+... ..++.-....+.+++-.+.+.++..+.+|++.-.|+.-..
T Consensus 79 v~~~~~f~~aF~FSveT~tTIGYG~~-----~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~srP~~ 144 (336)
T PF01007_consen 79 VSNVNSFTSAFLFSVETQTTIGYGSR-----YPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFSRPKK 144 (336)
T ss_dssp ECT-TTHHHHHHHHHHHHTT---SSS-----EB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred eecccchhhheeEEEEEEEEeccCCc-----ccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 35788999999887777777655431 1222223455666677777777888888888777776543
No 95
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=33.55 E-value=6.6e+02 Score=27.30 Aligned_cols=31 Identities=26% Similarity=0.339 Sum_probs=13.9
Q ss_pred eehhhHhHHHHHHHHHHHHHHHHHHHHHHHhH
Q 004951 642 AYFVSFYLITVLLLLNLVIAFVLEAFFAEMEL 673 (722)
Q Consensus 642 iyFv~f~~i~~~i~lnLfvavi~e~F~~~~~~ 673 (722)
++-.++.++....++-+++|+ +|-.-+.++-
T Consensus 179 ~~~~~~~l~~~~~~~~~via~-~D~~~qr~~~ 209 (349)
T PRK12721 179 VSTLIFWLWGGLLACYLVFGI-LDYSFQRYKI 209 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 333444444444444455554 4444443333
No 96
>PF03303 WTF: WTF protein; InterPro: IPR004982 This is a family of mainly hypothetical Schizosacchoromyces pombe proteins that are often encoded near long terminal repeats within the genome. Their function is unknown but they contain several predicted transmembrane regions and at least one protein is up-regulated during meiosis []. Upregulation is also observed in histone deacetylase mutants, indicating their transcription is normally inhibited by hypoacetylation [].
Probab=29.79 E-value=3.7e+02 Score=27.10 Aligned_cols=24 Identities=17% Similarity=0.083 Sum_probs=13.1
Q ss_pred HHHHHHHH-------Hhcccccccccccccc
Q 004951 147 IIHTFFPI-------TYEGSPIFWKSTYTRL 170 (722)
Q Consensus 147 ~~e~~~k~-------~~~g~~~y~~~~wn~~ 170 (722)
..|...|. ...|.+.+.|+..|..
T Consensus 144 fYETWtKavK~tvi~~~~Gi~~~~kk~~v~~ 174 (247)
T PF03303_consen 144 FYETWTKAVKVTVIVCGKGIKNFRKKWVVII 174 (247)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhHHHHHHHHH
Confidence 34666655 2455565666555543
No 97
>PRK08156 type III secretion system protein SpaS; Validated
Probab=28.78 E-value=6.3e+02 Score=27.58 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=9.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH
Q 004951 647 FYLITVLLLLNLVIAFVLEAFFAEM 671 (722)
Q Consensus 647 f~~i~~~i~lnLfvavi~e~F~~~~ 671 (722)
+.++..+.++=+.+|+ +|-.-..|
T Consensus 179 ~~l~~~~~~~~lvia~-~D~~~Qr~ 202 (361)
T PRK08156 179 VKLVLTFLACALIVLI-LDFIAEYF 202 (361)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 3333333334444443 34433333
No 98
>KOG3533 consensus Inositol 1,4,5-trisphosphate receptor [Signal transduction mechanisms]
Probab=28.38 E-value=1.1e+02 Score=38.21 Aligned_cols=33 Identities=27% Similarity=0.526 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004951 275 LFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQ 307 (722)
Q Consensus 275 ifFi~~i~i~~f~llnLfiaVi~~~f~~~~~~~ 307 (722)
+|=..|+++.-.+++||+.|||++.|...+.+.
T Consensus 2544 ~YDllFffivIiIVLNLIFGVIIDTFaDLRsEK 2576 (2706)
T KOG3533|consen 2544 AYDLLFFFIVIIIVLNLIFGVIIDTFADLRSEK 2576 (2706)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhh
Confidence 455555666666799999999999998665543
No 99
>PRK06298 type III secretion system protein; Validated
Probab=27.23 E-value=4.1e+02 Score=28.94 Aligned_cols=32 Identities=16% Similarity=0.259 Sum_probs=13.8
Q ss_pred eehhhHhHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 004951 642 AYFVSFYLITVLLLLNLVIAFVLEAFFAEMELE 674 (722)
Q Consensus 642 iyFv~f~~i~~~i~lnLfvavi~e~F~~~~~~~ 674 (722)
++...+.++..+.+.-+.+|+ +|-.-..|+-.
T Consensus 180 ~~~~~~~l~~~~~~~~~via~-~D~~~qr~~~~ 211 (356)
T PRK06298 180 FKEILYKAVTSIGIFFLVVAV-LDLVYQRHNFA 211 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 333444444444444444443 45444444333
No 100
>COG5249 RER1 Golgi protein involved in Golgi-to-ER retrieval [Intracellular trafficking and secretion]
Probab=26.54 E-value=1.5e+02 Score=27.44 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhh
Q 004951 652 VLLLLNLVIAFVLEAFFAEMELESS 676 (722)
Q Consensus 652 ~~i~lnLfvavi~e~F~~~~~~~~~ 676 (722)
++.++|.|+|++.-.|.-..++.++
T Consensus 65 giyLLn~flaFLTPKfdms~eq~e~ 89 (180)
T COG5249 65 GIYLLNAFLAFLTPKFDMSFEQIED 89 (180)
T ss_pred HHHHHHHHHHHhCCCCcccHhhhcc
Confidence 3459999999998888776555443
No 101
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=26.32 E-value=1.9e+02 Score=32.73 Aligned_cols=67 Identities=22% Similarity=0.317 Sum_probs=51.6
Q ss_pred HHHHHHHHhhhhccccccCCHHHHHHHHHHhhhhcCCCCCChHHHHHHhhhccCCCccccChhhHHhHHH
Q 004951 316 RRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCN 385 (722)
Q Consensus 316 r~~l~~af~~L~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~f~~l~~ 385 (722)
.+.+..+|..++ ++.|+++..+-...+.+.+... .....++.+.+....+.+.+++++.|+|..++-
T Consensus 18 l~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~--g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~ 84 (627)
T KOG0046|consen 18 LRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPL--GYFVREEIKEILGEVGVDADGRVEFEEFVGIFL 84 (627)
T ss_pred HHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccc--cchhHHHHHHHHhccCCCcCCccCHHHHHHHHH
Confidence 345778889998 8899999988777776665422 334567788888888889999999999988653
No 102
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=25.94 E-value=1.3e+02 Score=21.87 Aligned_cols=27 Identities=11% Similarity=0.262 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 004951 648 YLITVLLLLNLVIAFVLEAFFAEMELE 674 (722)
Q Consensus 648 ~~i~~~i~lnLfvavi~e~F~~~~~~~ 674 (722)
.+++.++++.+|.-+=+.-|+...+-.
T Consensus 7 ~iFsvvIil~If~~iGl~IyQkikqIr 33 (49)
T PF11044_consen 7 TIFSVVIILGIFAWIGLSIYQKIKQIR 33 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888777667777655433
No 103
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=25.36 E-value=1.1e+03 Score=27.33 Aligned_cols=44 Identities=20% Similarity=0.289 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhcCCCCCcchhhhccCchhHHHHHHHHHHHHHHHHHHH
Q 004951 245 TTLYQMFVLFTTSNNPDVWIPAYKASRWYCLFFVLYVLIGVYFVTNLI 292 (722)
Q Consensus 245 ~s~~~lf~l~t~e~w~dvm~~~~~~~~~~~ifFi~~i~i~~f~llnLf 292 (722)
+|++-....+|+-|++.+- |.. -.--+|-++.+++|+.+--.+|
T Consensus 426 ssLYfTMt~mttvGFGNiA-~~T---D~EKiF~v~mMii~aLLYAtIF 469 (971)
T KOG0501|consen 426 SSLYFTMTCMTTVGFGNIA-PNT---DNEKIFGVCMMIIGALLYATIF 469 (971)
T ss_pred hhhhhhhhhhhcccccccC-CCc---cHHHHHHHHHHHHHHHHHHHHH
Confidence 3443333566777776652 222 2234677888888877666666
No 104
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=23.27 E-value=3.2e+02 Score=25.95 Aligned_cols=61 Identities=15% Similarity=0.262 Sum_probs=44.9
Q ss_pred HHHHHHHHhhhhccccccCCHHHHHHHHHHhhhhcCCCCCChHHHHHHhhhccCCCccccChhhHH
Q 004951 316 RRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFA 381 (722)
Q Consensus 316 r~~l~~af~~L~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~f~ 381 (722)
+..+..||+..|+++.|.++.+..+.++... .-+.++++.+.++...-.+..+.++-.+|.
T Consensus 100 e~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~-----gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~ 160 (171)
T KOG0031|consen 100 EEVILNAFKTFDDEGSGKIDEDYLRELLTTM-----GDRFTDEEVDEMYREAPIDKKGNFDYKAFT 160 (171)
T ss_pred HHHHHHHHHhcCccCCCccCHHHHHHHHHHh-----cccCCHHHHHHHHHhCCcccCCceeHHHHH
Confidence 3457789999999999999998876665543 346788999888877666666666655443
No 105
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=20.38 E-value=5.3e+02 Score=25.59 Aligned_cols=62 Identities=21% Similarity=0.383 Sum_probs=44.9
Q ss_pred HHHHHhhhhccccccCCHHHHHHHHHHhhhhcCCCCCChHHHHHHhhhccCCCccccChhhHHhHHH
Q 004951 319 LGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCN 385 (722)
Q Consensus 319 l~~af~~L~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~f~~l~~ 385 (722)
....|++.|.+.+|+++..+-..+++++.. |+ +.--...+..+.|.+.+++++.-+|.=++.
T Consensus 101 ~~~~Fk~yDe~rDgfIdl~ELK~mmEKLga----pQ-THL~lK~mikeVded~dgklSfreflLIfr 162 (244)
T KOG0041|consen 101 AESMFKQYDEDRDGFIDLMELKRMMEKLGA----PQ-THLGLKNMIKEVDEDFDGKLSFREFLLIFR 162 (244)
T ss_pred HHHHHHHhcccccccccHHHHHHHHHHhCC----ch-hhHHHHHHHHHhhcccccchhHHHHHHHHH
Confidence 567789999999999999887777776632 22 122344567788889999999888765543
No 106
>PF14089 KbaA: KinB-signalling pathway activation in sporulation
Probab=20.35 E-value=8e+02 Score=23.85 Aligned_cols=44 Identities=14% Similarity=0.332 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccc--cccchhhHHHHHHHHHHHH
Q 004951 135 SLVYEGITLVILIIHTFFPITYEGSPIFWKST--YTRLKVLCLLILVADFLVY 185 (722)
Q Consensus 135 ~~~~e~~~~~if~~e~~~k~~~~g~~~y~~~~--wn~~d~~i~v~s~i~~~~~ 185 (722)
|++.++.|...++++-+-. . .||+. ||.+-+++++..+.|++..
T Consensus 44 SviSQMGFFAYLt~h~~gl------g-iFRs~~lWn~vQ~~li~fvlfDLvY~ 89 (180)
T PF14089_consen 44 SVISQMGFFAYLTVHRFGL------G-IFRSKSLWNAVQLVLIAFVLFDLVYF 89 (180)
T ss_pred HHHHHHHHHHHHHHHHHHH------H-HhccHhHHHHHHHHHHHHHHHHHHHH
Confidence 4444666666665554432 2 56776 9999999999999998643
No 107
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=20.32 E-value=1.1e+02 Score=27.21 Aligned_cols=59 Identities=25% Similarity=0.317 Sum_probs=32.9
Q ss_pred HHHHHHHHhhhhccccccCCHHHHHHHHHHhhhhcCCCCCChHHHHHHhhhccCCCccccChhhHH
Q 004951 316 RRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFA 381 (722)
Q Consensus 316 r~~l~~af~~L~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~f~ 381 (722)
...+.=.|..||..+++.++..+ ++..+..-.....-...++..=|.++++.|+..|+.
T Consensus 53 ~~~~~W~F~~LD~n~d~~L~~~E-------l~~l~~~l~~~e~C~~~F~~~CD~n~d~~Is~~EW~ 111 (113)
T PF10591_consen 53 KRVVHWKFCQLDRNKDGVLDRSE-------LKPLRRPLMPPEHCARPFFRSCDVNKDGKISLDEWC 111 (113)
T ss_dssp HHHHHHHHHHH--T-SSEE-TTT-------TGGGGSTTSTTGGGHHHHHHHH-TT-SSSEEHHHHH
T ss_pred hhhhhhhHhhhcCCCCCccCHHH-------HHHHHHHHhhhHHHHHHHHHHcCCCCCCCCCHHHHc
Confidence 44556668888888888888765 332222223334456667777777888888877753
No 108
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=20.08 E-value=6.7e+02 Score=27.36 Aligned_cols=25 Identities=16% Similarity=0.429 Sum_probs=10.3
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004951 646 SFYLITVLLLLNLVIAFVLEAFFAEM 671 (722)
Q Consensus 646 ~f~~i~~~i~lnLfvavi~e~F~~~~ 671 (722)
.+.++..+.+.-+++|+ +|-.-..|
T Consensus 192 ~~~l~~~~~~~~~via~-~D~~~q~~ 216 (358)
T PRK13109 192 AIRLVSAVAIATIVLVA-LDLVWARF 216 (358)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 34444444444444443 34333333
Done!