BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004952
(722 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 156 bits (395), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 153/570 (26%), Positives = 236/570 (41%), Gaps = 49/570 (8%)
Query: 167 WLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANAL 226
W LN+A CL H ++ + AI+W D D S ++Y+EL V AN L
Sbjct: 69 WYEDGTLNLAANCL--DRHLQENGDRTAIIWEGD--DTSQSKHISYRELHRDVCRFANTL 124
Query: 227 -DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIF 285
D KGD +AI MPM A + LA G V I F+ +A R+ S ++ +
Sbjct: 125 LDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVI 184
Query: 286 TQDFILRGGRKFPLYSKVLGA-------APLKAIVLPAIGNDVGIPLREQDLSWKDFLSS 338
T D +R GR PL V A + IVL G+D+ +DL W+D +
Sbjct: 185 TADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDW-QEGRDLWWRDLIEK 243
Query: 339 VDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVG 397
P + N D + IL++SG+TG+PK + T + A + ++ D G
Sbjct: 244 AS----PEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPG 298
Query: 398 DVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVP 453
D+Y ++GWV G +L+ GAT +++G P + V V +L T P
Sbjct: 299 DIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAP 358
Query: 454 SLVKAW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSS 511
+ ++A +EG D + +R S GE N + W W E C +
Sbjct: 359 TAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWY----WKKIGKEKCPVVDTWW 414
Query: 512 AYIQGSLLQPQAFGAFSTATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLG 564
G + GA +A ++D G +P + G + + + G
Sbjct: 415 QTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HPQEGATEGNLVITDSWPG 472
Query: 565 ASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSS 624
+ R L DHE +K M GD +R GY + GR DD +N+ G + +
Sbjct: 473 QA-RTLFGDHERFEQTYFSTFKNMYFS--GDGARRDEDGYYWITGRVDDVLNVSGHRLGT 529
Query: 625 VEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSK 684
EIE A I E A + + A G + + +V L G P+ L ++ +
Sbjct: 530 AEIESAL-VAHPKIAEAAVVGIPHAIKG-QAIYAYVTLNHGEEPSPE-LYAEVRNWVEKE 586
Query: 685 LNPL-----FKVVPEFPRTASNKLLRRVLR 709
+ PL P+T S K++RR+LR
Sbjct: 587 IGPLATPDVLHWTDSLPKTRSGKIMRRILR 616
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 156 bits (395), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 153/570 (26%), Positives = 236/570 (41%), Gaps = 49/570 (8%)
Query: 167 WLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANAL 226
W LN+A CL H ++ + AI+W D D S ++Y+EL V AN L
Sbjct: 69 WYEDGTLNLAANCL--DRHLQENGDRTAIIWEGD--DTSQSKHISYRELHRDVCRFANTL 124
Query: 227 -DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIF 285
D KGD +AI MPM A + LA G V I F+ +A R+ S ++ +
Sbjct: 125 LDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVI 184
Query: 286 TQDFILRGGRKFPLYSKVLGA-------APLKAIVLPAIGNDVGIPLREQDLSWKDFLSS 338
T D +R GR PL V A + IVL G+D+ +DL W+D +
Sbjct: 185 TADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDW-QEGRDLWWRDLIEK 243
Query: 339 VDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVG 397
P + N D + IL++SG+TG+PK + T + A + ++ D G
Sbjct: 244 AS----PEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPG 298
Query: 398 DVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVP 453
D+Y ++GWV G +L+ GAT +++G P + V V +L T P
Sbjct: 299 DIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAP 358
Query: 454 SLVKAW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSS 511
+ ++A +EG D + +R S GE N + W W E C +
Sbjct: 359 TAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWY----WKKIGKEKCPVVDTWW 414
Query: 512 AYIQGSLLQPQAFGAFSTATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLG 564
G + GA +A ++D G +P + G + + + G
Sbjct: 415 QTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HPQEGATEGNLVITDSWPG 472
Query: 565 ASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSS 624
+ R L DHE +K M GD +R GY + GR DD +N+ G + +
Sbjct: 473 QA-RTLFGDHERFEQTYFSTFKNMYFS--GDGARRDEDGYYWITGRVDDVLNVSGHRLGT 529
Query: 625 VEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSK 684
EIE A I E A + + A G + + +V L G P+ L ++ +
Sbjct: 530 AEIESAL-VAHPKIAEAAVVGIPHAIKG-QAIYAYVTLNHGEEPSPE-LYAEVRNWVRKE 586
Query: 685 LNPL-----FKVVPEFPRTASNKLLRRVLR 709
+ PL P+T S K++RR+LR
Sbjct: 587 IGPLATPDVLHWTDSLPKTRSGKIMRRILR 616
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 156 bits (394), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 153/570 (26%), Positives = 236/570 (41%), Gaps = 49/570 (8%)
Query: 167 WLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANAL 226
W LN+A CL H ++ + AI+W D D S ++Y+EL V AN L
Sbjct: 69 WYEDGTLNLAANCL--DRHLQENGDRTAIIWEGD--DTSQSKHISYRELHRDVCRFANTL 124
Query: 227 -DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIF 285
D KGD +AI MPM A + LA G V I F+ +A R+ S ++ +
Sbjct: 125 LDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVI 184
Query: 286 TQDFILRGGRKFPLYSKVLGA-------APLKAIVLPAIGNDVGIPLREQDLSWKDFLSS 338
T D +R GR PL V A + IVL G+D+ +DL W+D +
Sbjct: 185 TADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDW-QEGRDLWWRDLIEK 243
Query: 339 VDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVG 397
P + N D + IL++SG+TG+PK + T + A + ++ D G
Sbjct: 244 AS----PEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPG 298
Query: 398 DVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVP 453
D+Y ++GWV G +L+ GAT +++G P + V V +L T P
Sbjct: 299 DIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAP 358
Query: 454 SLVKAW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSS 511
+ ++A +EG D + +R S GE N + W W E C +
Sbjct: 359 TAIRALMAEGDKAIEGTDRSSLRILGSAGEPINPEAWEWY----WKKIGKEKCPVVDTWW 414
Query: 512 AYIQGSLLQPQAFGAFSTATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLG 564
G + GA +A ++D G +P + G + + + G
Sbjct: 415 QTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HPQEGATEGNLVITDSWPG 472
Query: 565 ASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSS 624
+ R L DHE +K M GD +R GY + GR DD +N+ G + +
Sbjct: 473 QA-RTLFGDHERFEQTYFSTFKNMYFS--GDGARRDEDGYYWITGRVDDVLNVSGHRLGT 529
Query: 625 VEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSK 684
EIE A I E A + + A G + + +V L G P+ L ++ +
Sbjct: 530 AEIESAL-VAHPKIAEAAVVGIPHAIKG-QAIYAYVTLNHGEEPSPE-LYAEVRNWVRKE 586
Query: 685 LNPL-----FKVVPEFPRTASNKLLRRVLR 709
+ PL P+T S K++RR+LR
Sbjct: 587 IGPLATPDVLHWTDSLPKTRSGKIMRRILR 616
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 156 bits (394), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 153/569 (26%), Positives = 237/569 (41%), Gaps = 47/569 (8%)
Query: 167 WLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANAL 226
W LN+A CL H ++ + AI+W D D S ++Y+EL V AN L
Sbjct: 69 WYEDGTLNLAANCL--DRHLQENGDRTAIIWEGD--DTSQSKHISYRELHRDVCRFANTL 124
Query: 227 -DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIF 285
D KGD +AI MPM A + LA G V I F+ +A R+ S ++ +
Sbjct: 125 LDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVI 184
Query: 286 TQDFILRGGRKFPLYSKVLGA-------APLKAIVLPAIGNDVGIPLREQDLSWKDFLSS 338
T D +R GR PL V A + IVL G+D+ +DL W+D +
Sbjct: 185 TADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDW-QEGRDLWWRDLIEK 243
Query: 339 VDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVG 397
P + N D + IL++SG+TG+PK + T + A + ++ D G
Sbjct: 244 AS----PEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPG 298
Query: 398 DVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVP 453
D+Y ++GWV G +L+ GAT +++G P + V V +L T P
Sbjct: 299 DIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAP 358
Query: 454 SLVKAW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSS 511
+ ++A +EG D + +R S GE N + W W E C +
Sbjct: 359 TAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWY----WKKIGKEKCPVVDTWW 414
Query: 512 AYIQGSLLQPQAFGAFSTATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLG 564
G + GA +A ++D G +P + G + + + G
Sbjct: 415 QTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HPQEGATEGNLVITDSWPG 472
Query: 565 ASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSS 624
+ R L DHE +K M GD +R GY + GR DD +N+ G + +
Sbjct: 473 QA-RTLFGDHERFEQTYFSTFKNMYFS--GDGARRDEDGYYWITGRVDDVLNVSGHRLGT 529
Query: 625 VEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPD---KLKMIFSKAI 681
EIE A I E A + + A G + + +V L G P+ +++ +K I
Sbjct: 530 AEIESAL-VAHPKIAEAAVVGIPHAIKG-QAIYAYVTLNHGEEPSPELYAEVRNWVAKEI 587
Query: 682 QSKLNP-LFKVVPEFPRTASNKLLRRVLR 709
P + P+T S K++RR+LR
Sbjct: 588 GPLATPDVLHWTDSLPKTRSGKIMRRILR 616
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 152/570 (26%), Positives = 235/570 (41%), Gaps = 49/570 (8%)
Query: 167 WLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANAL 226
W LN+A CL H ++ + AI+W D D S ++Y+EL V AN L
Sbjct: 69 WYEDGTLNLAANCL--DRHLQENGDRTAIIWEGD--DTSQSKHISYRELHRDVCRFANTL 124
Query: 227 -DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIF 285
D KGD +AI MPM A + LA G V I F+ +A R+ S ++ +
Sbjct: 125 LDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVI 184
Query: 286 TQDFILRGGRKFPLYSKVLGA-------APLKAIVLPAIGNDVGIPLREQDLSWKDFLSS 338
T D +R GR PL V A + IVL G+D+ +DL W+D +
Sbjct: 185 TADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDW-QEGRDLWWRDLIEK 243
Query: 339 VDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVG 397
P + N D + IL++SG+TG+PK + T + A + ++ D G
Sbjct: 244 AS----PEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPG 298
Query: 398 DVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVP 453
D+Y ++GWV G +L+ GAT +++G P + V V +L T P
Sbjct: 299 DIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAP 358
Query: 454 SLVKAW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSS 511
+ ++A +EG D + +R S GE N + W W E C +
Sbjct: 359 TAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWY----WKKIGKEKCPVVDTWW 414
Query: 512 AYIQGSLLQPQAFGAFSTATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLG 564
G + GA +A ++D G +P + G + + + G
Sbjct: 415 QTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HPQEGATEGNLVITDSWPG 472
Query: 565 ASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSS 624
+ R L DHE +K M GD +R GY + GR DD +N+ G + +
Sbjct: 473 QA-RTLFGDHERFEQTYFSTFKNMYFS--GDGARRDEDGYYWITGRVDDVLNVSGHRLGT 529
Query: 625 VEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSK 684
EIE A I E A + + A G + + +V L G P+ L ++ +
Sbjct: 530 AEIESAL-VAHPKIAEAAVVGIPHAIKG-QAIYAYVTLNHGEEPSPE-LYAEVRNWVRKE 586
Query: 685 LNPL-----FKVVPEFPRTASNKLLRRVLR 709
+ PL P+T S ++RR+LR
Sbjct: 587 IGPLATPDVLHWTDSLPKTRSGAIMRRILR 616
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 153 bits (386), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 152/570 (26%), Positives = 235/570 (41%), Gaps = 49/570 (8%)
Query: 167 WLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANAL 226
W LN+A CL H ++ + AI+W D D S ++Y+EL V AN L
Sbjct: 69 WYEDGTLNLAANCL--DRHLQENGDRTAIIWEGD--DTSQSKHISYRELHRDVCRFANTL 124
Query: 227 -DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIF 285
D KGD +AI MPM A + LA G V I F+ +A R+ S ++ +
Sbjct: 125 LDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVI 184
Query: 286 TQDFILRGGRKFPLYSKVLGA-------APLKAIVLPAIGNDVGIPLREQDLSWKDFLSS 338
T D +R G PL V A + IVL G+D+ +DL W+D +
Sbjct: 185 TADEGVRAGASIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDW-QEGRDLWWRDLIEK 243
Query: 339 VDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVG 397
P + N D + IL++SG+TG+PK + T + A + ++ D G
Sbjct: 244 AS----PEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPG 298
Query: 398 DVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVP 453
D+Y ++GWV G +L+ GAT +++G P + V V +L T P
Sbjct: 299 DIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAP 358
Query: 454 SLVKAW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSS 511
+ ++A +EG D + +R S GE N + W W E C +
Sbjct: 359 TAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWY----WKKIGKEKCPVVDTWW 414
Query: 512 AYIQGSLLQPQAFGAFSTATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLG 564
G + GA +A ++D G +P + G + + + G
Sbjct: 415 QTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HPQEGATEGNLVITDSWPG 472
Query: 565 ASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSS 624
+ R L DHE +K M GD +R GY + GR DD +N+ G + +
Sbjct: 473 QA-RTLFGDHERFEQTYFSTFKNMYFS--GDGARRDEDGYYWITGRVDDVLNVSGHRLGT 529
Query: 625 VEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSK 684
EIE A I E A + + A G + + +V L G P+ L ++ +
Sbjct: 530 AEIESAL-VAHPKIAEAAVVGIPHAIKG-QAIYAYVTLNHGEEPSPE-LYAEVRNWVRKE 586
Query: 685 LNPL-----FKVVPEFPRTASNKLLRRVLR 709
+ PL P+T S K++RR+LR
Sbjct: 587 IGPLATPDVLHWTDSLPKTRSGKIMRRILR 616
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 152 bits (385), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 152/570 (26%), Positives = 235/570 (41%), Gaps = 49/570 (8%)
Query: 167 WLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANAL 226
W LN+A CL H ++ + AI+W D D S ++Y+EL V AN L
Sbjct: 69 WYEDGTLNLAANCL--DRHLQENGDRTAIIWEGD--DTSQSKHISYRELHRDVCRFANTL 124
Query: 227 -DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIF 285
D KGD +AI MPM A + LA G V I F+ +A + S ++ +
Sbjct: 125 LDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVI 184
Query: 286 TQDFILRGGRKFPLYSKVLGA-------APLKAIVLPAIGNDVGIPLREQDLSWKDFLSS 338
T D +R GR PL V A + IVL G+D+ +DL W+D +
Sbjct: 185 TADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDW-QEGRDLWWRDLIEK 243
Query: 339 VDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVG 397
P + N D + IL++SG+TG+PK + T + A + ++ D G
Sbjct: 244 AS----PEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPG 298
Query: 398 DVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVP 453
D+Y ++GWV G +L+ GAT +++G P + V V +L T P
Sbjct: 299 DIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAP 358
Query: 454 SLVKAW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSS 511
+ ++A +EG D + +R S GE N + W W E C +
Sbjct: 359 TAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWY----WKKIGKEKCPVVDTWW 414
Query: 512 AYIQGSLLQPQAFGAFSTATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLG 564
G + GA +A ++D G +P + G + + + G
Sbjct: 415 QTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HPQEGATEGNLVITDSWPG 472
Query: 565 ASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSS 624
+ R L DHE +K M GD +R GY + GR DD +N+ G + +
Sbjct: 473 QA-RTLFGDHERFEQTYFSTFKNMYFS--GDGARRDEDGYYWITGRVDDVLNVSGHRLGT 529
Query: 625 VEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSK 684
EIE A I E A + + A G + + +V L G P+ L ++ +
Sbjct: 530 AEIESAL-VAHPKIAEAAVVGIPHAIKG-QAIYAYVTLNHGEEPSPE-LYAEVRNWVRKE 586
Query: 685 LNPL-----FKVVPEFPRTASNKLLRRVLR 709
+ PL P+T S K++RR+LR
Sbjct: 587 IGPLATPDVLHWTDSLPKTRSGKIMRRILR 616
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 109 bits (272), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 140/594 (23%), Positives = 248/594 (41%), Gaps = 63/594 (10%)
Query: 161 SKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVM 220
S W LN C+ H K N AI++ D + +TYKEL E+V
Sbjct: 69 SFQNNAWFLNGQLNACYNCV--DRHALKTPNKKAIIFEGDEPGQGYS--ITYKELLEEVC 124
Query: 221 LVANALDTMFS--KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRV 278
VA L KGD +A+ MPM A+I LAI G + + F++ + R+
Sbjct: 125 QVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRIND 184
Query: 279 SKAKGIFTQDFILRGGRKFP---LYSKVLGAAP-LKAIVLPAIGNDVGIPLRE-QDLSWK 333
+K + T D RGG+ + L P ++ +++ N+ + +DL W
Sbjct: 185 GDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDW- 243
Query: 334 DFLSSVDYHPRPNYYSPVYNPVDAV--VNILFSSGTTGEPKAIPWTQ-------LSSIRC 384
+ + YY PVD+ + +L++SG+TG PK + + L ++R
Sbjct: 244 ----ATEKKKYKTYYP--CTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRY 297
Query: 385 TAEGWAHIDLKVGDVYCWPTNLGWVMGPV-ILFSSFLNGATLALYQGSPLERSFGKF--- 440
T D DV+ ++GW+ G +++ L G +++G+P ++ ++
Sbjct: 298 T------FDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDI 351
Query: 441 VQDAGVTVLGTVPSLVKAWRNT--NCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN 498
+ + VT P+ ++ + + +E +R S GE + W S K N
Sbjct: 352 IDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKN 411
Query: 499 A--IIESCGGTELSSAYIQ--GSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVG 554
I+++ TE S + + P G+ S V+LD + G
Sbjct: 412 EIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEG 471
Query: 555 EVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDT 614
+ + + + R + +H+ + Y G GD + GYI + GR DD
Sbjct: 472 VLAVKAAWPSFA-RTIWKNHDRYLDTYLNPYPGYYFT--GDGAAKDKDGYIWILGRVDDV 528
Query: 615 MNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKG---FTSQPD 671
+N+ G + S+ EIE + D + E A + + G + + FVVLK T+ D
Sbjct: 529 VNVSGHRLSTAEIEAAIIE-DPIVAECAVVGFNDDLTG-QAVAAFVVLKNKSSWSTATDD 586
Query: 672 KLK-----MIFSKAIQSKLNP-----LFKVVPEFPRTASNKLLRRVLRDQIKHE 715
+L+ ++F+ ++ + P L +V + P+T S K++RR+LR + E
Sbjct: 587 ELQDIKKHLVFT--VRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGE 638
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 126/516 (24%), Positives = 196/516 (37%), Gaps = 63/516 (12%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
MTY ++ A+ L + +KGD +A+ MP +V ++ G V V I A
Sbjct: 44 MTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLA 103
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
A E++ L S +K ++ G P+ + A V IG D L E+
Sbjct: 104 APEVSFILSDSGSK------VVIYGAPSAPVIDAIRAQADPPGTVTDWIGAD---SLAER 154
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG 388
S +V+ N + I+++SGTTG PK + T S+ A
Sbjct: 155 LRSAAADEPAVECGGDDNLF------------IMYTSGTTGHPKGVVHTH-ESVHSAASS 201
Query: 389 WAH-IDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVT 447
WA ID++ D P + V + S + G TL + + V++ V
Sbjct: 202 WASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEER-VC 260
Query: 448 VLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN-------AI 500
+ G VP+++ R LD R F + G + + A N A+
Sbjct: 261 IGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPM---PEALIKIYAAKNIEVVQGYAL 317
Query: 501 IESCGGTELSSAYIQGSLLQPQAF---GAFSTATMTAGLVILDECGVPYPDDQPCVGEVG 557
ESCGG L LL A G+ ATM + + + GV + GEV
Sbjct: 318 TESCGGGTL--------LLSEDALRKAGSAGRATMFTDVAVRGDDGVIREHGE---GEVV 366
Query: 558 LFPLYLGASDRLLNADHEEVYFRGMPMYKGM--CLRRHGDIIKRTVGGYIIVQGRADDTM 615
+ SD LL +E + R R GDI + GY+ ++ R D +
Sbjct: 367 I------KSDILL----KEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKDRLKDMI 416
Query: 616 NLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKM 675
GG EIE V + E A I + G E+ VV + S+ ++
Sbjct: 417 ISGGENVYPAEIESVIIGV-PGVSEVAVIGLPDEKWG-EIAAAIVVADQNEVSEQQIVEY 474
Query: 676 IFSKAIQSKLNPLFKVVPEFPRTASNKLLRRVLRDQ 711
++ + KL PR + K+L+ VLR+Q
Sbjct: 475 CGTRLARYKLPKKVIFAEAIPRNPTGKILKTVLREQ 510
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 128/549 (23%), Positives = 206/549 (37%), Gaps = 108/549 (19%)
Query: 209 LMTYKELREQVMLVANALDTM--FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADS 266
+ ++EL E AN L +GD +A+ +P ++ L I AG + +
Sbjct: 73 MWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQ 132
Query: 267 FAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLR 326
+ +I RL++SKAK I D +V+ A P++ + + +
Sbjct: 133 MKSTDILYRLQMSKAKAIVAGD-------------EVIQEVDTVASECPSLRIKLLVSEK 179
Query: 327 EQD--LSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRC 384
D L++K L+ + V I F+SGT+G PK + SS+
Sbjct: 180 SCDGWLNFKKLLNEAS-----TTHHCVETGSQEASAIYFTSGTSGLPKMAEHS-YSSLGL 233
Query: 385 TAE---GWAHIDLKVGDVYCWPTNLGWV-------MGPVIL-----------FSSFLNGA 423
A+ GW L+ D+ ++ GW+ M P L F +
Sbjct: 234 KAKMDAGWT--GLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILK 291
Query: 424 TLALY-----QGSPL--------ERSFGKFVQDAGVTVLGT--VPSLVKAWRNTNCLEGL 468
TL+ Y G+P+ + S KF +G +P ++ WR GL
Sbjct: 292 TLSSYPIKSMMGAPIVYRMLLQQDLSSYKFPHLQNCVTVGESLLPETLENWRAQT---GL 348
Query: 469 DWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFS 528
D + TG T V + + K Y SC ++ +G++L P G
Sbjct: 349 DIRESYGQTETGLTCMVSKTMKI--KPGYMGTAASCYDVQIIDD--KGNVLPPGTEG--- 401
Query: 529 TATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGM 588
+ G+ +P +G+F Y+ N D RG
Sbjct: 402 ------------DIGIRVKPIRP----IGIFSGYVD------NPDKTAANIRG------- 432
Query: 589 CLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSP 648
GD + GY GRADD +N G + E+E + +++ETA IS SP
Sbjct: 433 DFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALME-HPAVVETAVIS-SP 490
Query: 649 AGGGPEVLVIFVVLKKGFTSQ-PDKLKMIFSKAIQSKLNPL-----FKVVPEFPRTASNK 702
EV+ FVVL F S P++L + ++S P + V P+T + K
Sbjct: 491 DPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGK 550
Query: 703 LLRRVLRDQ 711
+ R LRD+
Sbjct: 551 IQRAKLRDK 559
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 128/549 (23%), Positives = 206/549 (37%), Gaps = 108/549 (19%)
Query: 209 LMTYKELREQVMLVANALDTM--FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADS 266
+ ++EL E AN L +GD +A+ +P ++ L I AG + +
Sbjct: 73 MWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQ 132
Query: 267 FAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLR 326
+ +I RL++SKAK I D +V+ A P++ + + +
Sbjct: 133 MKSTDILYRLQMSKAKAIVAGD-------------EVIQEVDTVASECPSLRIKLLVSEK 179
Query: 327 EQD--LSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRC 384
D L++K L+ + V I F+SGT+G PK + SS+
Sbjct: 180 SCDGWLNFKKLLNEAS-----TTHHCVETGSQEASAIYFTSGTSGLPKMAEHS-YSSLGL 233
Query: 385 TAE---GWAHIDLKVGDVYCWPTNLGWV-------MGPVIL-----------FSSFLNGA 423
A+ GW L+ D+ ++ GW+ M P L F +
Sbjct: 234 KAKMDAGWT--GLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILK 291
Query: 424 TLALY-----QGSPL--------ERSFGKFVQDAGVTVLGT--VPSLVKAWRNTNCLEGL 468
TL+ Y G+P+ + S KF +G +P ++ WR GL
Sbjct: 292 TLSSYPIKSMMGAPIVYRMLLQQDLSSYKFPHLQNCVTVGESLLPETLENWRAQT---GL 348
Query: 469 DWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFS 528
D + TG T V + + K Y SC ++ +G++L P G
Sbjct: 349 DIRESYGQTETGLTCMVSKTMKI--KPGYMGTAASCYDVQIIDD--KGNVLPPGTEG--- 401
Query: 529 TATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGM 588
+ G+ +P +G+F Y+ N D RG
Sbjct: 402 ------------DIGIRVKPIRP----IGIFSGYVD------NPDKTAANIRG------- 432
Query: 589 CLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSP 648
GD + GY GRADD +N G + E+E + +++ETA IS SP
Sbjct: 433 DFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALME-HPAVVETAVIS-SP 490
Query: 649 AGGGPEVLVIFVVLKKGFTSQ-PDKLKMIFSKAIQSKLNPL-----FKVVPEFPRTASNK 702
EV+ FVVL F S P++L + ++S P + V P+T + K
Sbjct: 491 DPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGK 550
Query: 703 LLRRVLRDQ 711
+ R LRD+
Sbjct: 551 IQRAKLRDK 559
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 95/360 (26%), Positives = 153/360 (42%), Gaps = 29/360 (8%)
Query: 362 LFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVG--DVYCWPTNL--GWVMGPVILFS 417
L+SSG+TG+PK T +++ TAE +A L + DV L + +G + F
Sbjct: 189 LYSSGSTGKPKGTVHTH-ANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFP 247
Query: 418 SFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFA 477
+ + + + + F + V+ TV VP+L + L IR
Sbjct: 248 LSVGATAILMAERPTADAIFARLVEHRP-TVFYGVPTLYANMLVSPNLPARADVAIRICT 306
Query: 478 STGETSNVDDDLWLSSKAWYNA-IIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGL 536
S GE + ++ A + I++ G TE+ ++ + +G +
Sbjct: 307 SAGEA--LPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGAVE-YGTTGRPVPGYEI 363
Query: 537 VILDECGVPYPDDQPCVGEVGLFPLYL-GASDRLLNADHEEVYFRGMPMYKGMCLRRHGD 595
+ DE G PD GEVG LY+ G S ++ ++ E + + G +R GD
Sbjct: 364 ELRDEAGHAVPD-----GEVG--DLYIKGPSAAVMYWNNRE---KSRATFLGEWIRS-GD 412
Query: 596 IIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEV 655
R G + GR+DD + + G S VE+E V Q D ++LE A + V GG
Sbjct: 413 KYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHD-AVLEAAVVGVD--HGGLVK 469
Query: 656 LVIFVVLKKGFTSQ---PDKLKMIFSKAIQSKLNPLFKV-VPEFPRTASNKLLRRVLRDQ 711
FVVLK+ F ++LK + P V V + P+TA+ K+ R LR+Q
Sbjct: 470 TRAFVVLKREFAPSEILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLREQ 529
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 98/397 (24%), Positives = 144/397 (36%), Gaps = 67/397 (16%)
Query: 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGD 398
HP ++ + +P D V S GTTG PK IP T S+R + E +
Sbjct: 171 HPAEDF-TATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVE-ICQFTQQTRY 228
Query: 399 VYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKA 458
+ P + M FL G T+ L F ++ V V VP V
Sbjct: 229 LCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCF-PLIEKHQVNVTALVPPAVSL 287
Query: 459 WRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQ--- 515
W +EG ++ S + GG LS+
Sbjct: 288 WLQA-LIEGESRAQLASLK-----------------------LLQVGGARLSATLAARIP 323
Query: 516 ---GSLLQPQAFGAFSTATMTAGLV-----------ILDECGVPY-PDDQPCVGEVGLFP 560
G LQ Q FG M GLV I+ G P PDD+ V + P
Sbjct: 324 AEIGCQLQ-QVFG------MAEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNP 376
Query: 561 LYLGASDRLLNADHEEVYFRGM---PMYKGMCLRRHG-----DIIKRTVGGYIIVQGRAD 612
L G RL+ FRG P + +G D+I GYI VQGR
Sbjct: 377 LPQGEVGRLMT--RGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREK 434
Query: 613 DTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDK 672
D +N GG K ++ EIE + + +++ A +S+ G E ++V+K+ + +
Sbjct: 435 DQINRGGEKIAAEEIENLLLR-HPAVIYAALVSMEDELMG-EKSCAYLVVKEPLRAVQVR 492
Query: 673 LKMIFSKAIQSKLNPLFKVVPEFPRTASNKLLRRVLR 709
+ + KL + V P TA K+ ++ LR
Sbjct: 493 RFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLR 529
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 85/347 (24%), Positives = 132/347 (38%), Gaps = 46/347 (13%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
MTY ++ A+ L + +KGD +A+ MP +V ++ G V V I A
Sbjct: 30 MTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLA 89
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
A E++ L S +K ++ G P+ + A V IG D L E+
Sbjct: 90 APEVSFILSDSGSK------VVIYGAPSAPVIDAIRAQADPPGTVTDWIGAD---SLAER 140
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG 388
S +V+ N + I+++SGTTG PK + T S+ A
Sbjct: 141 LRSAAADEPAVECGGDDNLF------------IMYTSGTTGHPKGVVHTH-ESVHSAASS 187
Query: 389 WAH-IDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVT 447
WA ID++ D P + V + S + G TL + + V++ V
Sbjct: 188 WASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEER-VC 246
Query: 448 VLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN-------AI 500
+ G VP+++ R LD R F + G + + A N A+
Sbjct: 247 IGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPM---PEALIKIYAAKNIEVVQGYAL 303
Query: 501 IESCGGTELSSAYIQGSLLQPQAF---GAFSTATMTAGLVILDECGV 544
ESCGG L LL A G+ ATM + + + GV
Sbjct: 304 TESCGGGTL--------LLSEDALRKAGSAGRATMFTDVAVRGDDGV 342
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 122/560 (21%), Positives = 211/560 (37%), Gaps = 81/560 (14%)
Query: 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMT 243
+ R +A++W +D +E + T+K+L+ AN KGD + + +
Sbjct: 65 YARDSPEKLAMIWCDDYGNE---KIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSR 121
Query: 244 VRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGI--FTQDFILRGGRKFPLYS 301
L + G + V R+I R+ + K I +D + +
Sbjct: 122 YDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDV---PEQVDEAH 178
Query: 302 KVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSP---VYNPVDAV 358
G PLK +G DV W DF ++ P + P V + +
Sbjct: 179 AECGDIPLKK---AKVGGDVL-------EGWIDFRKELE-ESSPIFERPTGEVSTKNEDI 227
Query: 359 VNILFSSGTTGEPKAIPWTQLSSIR--CTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-- 414
+ FSSGT G PK + + TA+ W +++ ++ + GW G +
Sbjct: 228 CLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDD--GLHYTVADSGW--GKCVWG 283
Query: 415 -LFSSFLNGATLALYQGSPLE-RSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTK 472
L+ ++ G + +Y E ++ + GVT P++ + + L +++
Sbjct: 284 KLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED-LSHYNFST 342
Query: 473 IRSFASTGETSNVD-DDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTAT 531
++ GE N + + +L ++E G TE ++P+ G+ T
Sbjct: 343 LKYAVVAGEPLNPEVFNRFLEFTGI--KLMEGFGQTETVVTIATFPWMEPKP-GSIGKPT 399
Query: 532 MTAGLVILDECGVPYPDDQPC-VGE-------------VGLFPLYLGASDRLLNADHEEV 577
+ ++D D + C VGE VGLF Y +R H+
Sbjct: 400 PGYKIELMDR------DGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGY 453
Query: 578 YFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADES 637
Y GD+ GY+ GRADD + G K E+E Q +
Sbjct: 454 Y-------------HTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQH-PA 499
Query: 638 ILETAAISV-SPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNP-----LFKV 691
+LE A V P G +V+ +VL K +T D LK +++ P + +
Sbjct: 500 VLECAITGVPDPVRG--QVIKATIVLTKDYTPS-DSLKNELQDHVKNVTAPYKYPRIIEF 556
Query: 692 VPEFPRTASNKLLRRVLRDQ 711
VPE P+T S K+ R +RD+
Sbjct: 557 VPELPKTISGKIRRVEIRDK 576
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 122/537 (22%), Positives = 203/537 (37%), Gaps = 62/537 (11%)
Query: 201 RCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYV 259
R V+ TY E+ ++ + L + GD +A R + Y A+ G V
Sbjct: 39 RLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAV 98
Query: 260 VVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGN 319
+ + + +EIA L ++ K + +L PL + G LK + + +
Sbjct: 99 LHTANPRLSPKEIAYILNHAEDKVLLFDPNLL------PLVEAIRGE--LKTVQHFVVMD 150
Query: 320 DVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ- 378
+ E L++++ L PV P A + +++GTTG PK + ++
Sbjct: 151 EKA---PEGYLAYEEALG--------EEADPVRVPERAACGMAYTTGTTGLPKGVVYSHR 199
Query: 379 ---LSSIRCT-AEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLE 434
L S+ + +G A L DV + V + +++ L GA L
Sbjct: 200 ALVLHSLAASLVDGTA---LSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDP 256
Query: 435 RSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSK 494
S + GVT VP++ A + G +R G S L +
Sbjct: 257 ASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGG--SAAPRSLIARFE 314
Query: 495 AWYNAIIESCGGTELSSAYIQG-------SLLQPQAFGAFSTATMTAGLV---ILDECGV 544
+ + G TE S +Q SL + + + + LV + DE G
Sbjct: 315 RMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGR 374
Query: 545 PYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKR 599
P P D +GEV L Y G + +A + +FR GDI
Sbjct: 375 PVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFR------------TGDIAVW 422
Query: 600 TVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIF 659
GY+ ++ R D + GG SSV++E + E A +++ L
Sbjct: 423 DEEGYVEIKDRLKDLIKSGGEWISSVDLENAL-MGHPKVKEAAVVAIPHPKWQERPLA-- 479
Query: 660 VVLKKGFTSQPDKLKMIFSKAIQSK--LNPLFKVVPEFPRTASNKLLRRVLRDQIKH 714
VV+ +G P++L KA +K L + E PRT++ K L+R LR+Q K+
Sbjct: 480 VVVPRGEKPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKN 536
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 94/399 (23%), Positives = 149/399 (37%), Gaps = 97/399 (24%)
Query: 358 VVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFS 417
V ++F+SG+TG PK + + ++ T G + +V+ + + W + LF
Sbjct: 216 VACVMFTSGSTGRPKGV-MSPHRALTGTYLGQDYAGFGPDEVFLQCSPVSWDAFGLELFG 274
Query: 418 SFLNGATLALYQGS---PLERSFGKFVQDAGVTVL------------------------- 449
+ L GA L G PLE G+ V GVT+L
Sbjct: 275 ALLFGARCVLQSGQNPDPLE--IGELVARHGVTMLQLSASLFNFLVDEVPEAFEGVRYAI 332
Query: 450 -----GTVPSLVKAWRNTNCLE-GLDWTKIRSFASTGETSNVDDDLW---------LSSK 494
+VP + KA R+ L G + S T + V DL L+ K
Sbjct: 333 TGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGVPLAGK 392
Query: 495 AWY--NAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPC 552
Y + ++ L Y+ G+ L A G S +TA + D P
Sbjct: 393 RAYVLDDDLKPAANGALGELYVAGAGL---AHGYVSRPALTAERFVAD----------PF 439
Query: 553 VGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRAD 612
G G E +Y R GD+ +R G + GRAD
Sbjct: 440 AGPGG-----------------ERMY-------------RTGDLARRRADGVLEYVGRAD 469
Query: 613 DTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPD- 671
D + + G + E+E + AA+ + G + LV +VV ++ + PD
Sbjct: 470 DQVKIRGFRVEPGEVE--ARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERA-DAPPDA 526
Query: 672 -KLKMIFSKAIQSKLNPLFKV-VPEFPRTASNKLLRRVL 708
+L+ ++A+ + + P+ V V E PRT + KL RR L
Sbjct: 527 AELRRHVAEALPAYMVPVECVPVDELPRTPNGKLDRRAL 565
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 115/522 (22%), Positives = 201/522 (38%), Gaps = 62/522 (11%)
Query: 210 MTYKELREQVMLVANALDTMFS-KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
++Y+EL E+ +A L + KG +A+ ++ VI L ++ AG + +
Sbjct: 490 LSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLP 549
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
I+ L S A + T + + P L D EQ
Sbjct: 550 EDRISYMLADSAAACLLTHQEMKEQAAELPYTGTTLFI-------------DDQTRFEEQ 596
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG 388
D +++D PN P Y I+++SGTTG+PK T ++I+ +
Sbjct: 597 ---ASDPATAID----PN--DPAY--------IMYTSGTTGKPKGNITTH-ANIQGLVKH 638
Query: 389 WAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPL---ERSFGKFVQDAG 445
++ D + +N + ++S LN A L + L ER +Q+
Sbjct: 639 VDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQE-N 697
Query: 446 VTVLGTVPSLVKAWRNTNCLEGLDWTK-IRSFASTGETSNVDDDLWLSSKAWYNAIIESC 504
V V+ +L + G DW K +R GE ++V +I
Sbjct: 698 VNVMFATTALFNLLTDA----GEDWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCY 753
Query: 505 G---GTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPL 561
G GT ++A++ L + A + IL+E P G VG +
Sbjct: 754 GPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQP-----FGAVGELCI 808
Query: 562 Y-LGASDRLLN-ADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGG 619
+G S +N AD + F P G L R GD+ + G I GR DD + + G
Sbjct: 809 SGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRG 868
Query: 620 IKTSSVEIERVCDQADESI-LETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFS 678
+ +E+E + Q E ++ A + G + ++V + +++ +K
Sbjct: 869 HR---IELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQLSAE--DVKAHLK 923
Query: 679 KAIQSKLNP-LFKVVPEFPRTASNKLLRRVL----RDQIKHE 715
K + + + P F + E P T + K+ +R+L +DQ+ E
Sbjct: 924 KQLPAYMVPQTFTFLDELPLTTNGKVNKRLLPKPDQDQLAEE 965
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 65/126 (51%), Gaps = 3/126 (2%)
Query: 592 RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGG 651
R GDI++ T GYI+V+GRA D +N GG K ++ E+E A ++ + A +S+
Sbjct: 410 RTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHL-LAHPAVHDAAMVSMPDQFL 468
Query: 652 GPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQS-KLNPLFKVVPEFPRTASNKLLRRVLRD 710
G E +F++ + + + + + + K+ + V FP+T K+ ++ LR+
Sbjct: 469 G-ERSCVFIIPRDEAPKAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALRE 527
Query: 711 QIKHEL 716
I +L
Sbjct: 528 AISEKL 533
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 31/140 (22%)
Query: 592 RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIER-------VCDQA-----DESIL 639
R GDI++ T GYI+V+GRA D +N GG K ++ E+E V D A D+ +
Sbjct: 410 RTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAXVSXPDQFLG 469
Query: 640 ETAAISVSPAGGGPEVLVIFVVLK-KGFTSQ--PDKLKMIFSKAIQSKLNPLFKVVPEFP 696
E + + + P P+ + L+ +G + PD+++ + S FP
Sbjct: 470 ERSCVFIIPRDEAPKAAELKAFLRERGLAAYKIPDRVEFVES----------------FP 513
Query: 697 RTASNKLLRRVLRDQIKHEL 716
+T K+ ++ LR+ I +L
Sbjct: 514 QTGVGKVSKKALREAISEKL 533
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 106/529 (20%), Positives = 204/529 (38%), Gaps = 67/529 (12%)
Query: 208 NLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADS 266
++ TY ++ VA+ L+ + +GD I + +P + V+ +L G ++ +
Sbjct: 48 DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPF 107
Query: 267 FAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKV----LGAAPLKAIVLPAIGNDVG 322
E+A + S+AK + TQ + F S V + +AP D
Sbjct: 108 STPAELAKHAKASRAKLLITQACYYEKVKDFARESDVKVMCVDSAP-----------DGC 156
Query: 323 IPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSI 382
+ E + ++ VD P D VV + +SSGTTG PK + T I
Sbjct: 157 LHFSELTQADENEAPQVDISP------------DDVVALPYSSGTTGLPKGVMLTHKGLI 204
Query: 383 RCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLE-------R 435
A+ +D ++Y ++ + P+ + + L G+P+
Sbjct: 205 TSVAQ---QVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIG 261
Query: 436 SFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKA 495
S ++ V++ VP ++ + + L+ D + +R S G + + + +K
Sbjct: 262 SLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKF 321
Query: 496 WYNAIIESCGGTELSSAYIQGSLLQPQAF----GAFSTATMTAGLVILD-ECGVPYPDDQ 550
+ + G TE + F GA T A + I+D E G P +Q
Sbjct: 322 PQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQ 381
Query: 551 PCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHG-----DIIKRTVGGYI 605
P GE+ + D+++ + P + + G DI +
Sbjct: 382 P--GEICI------RGDQIMKG------YLNDPEATSRTIDKEGWLHTGDIGYIDDDDEL 427
Query: 606 IVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKG 665
+ R + + G + + E+E + A I + A + + G EV V FVV +
Sbjct: 428 FIVDRLKELIKYKGFQVAPAELEALL-IAHPEISDAAVVGLKDEDAG-EVPVAFVVKSEK 485
Query: 666 FTSQPDKLKMIFSKAI--QSKLNPLFKVVPEFPRTASNKLLRRVLRDQI 712
+ D++K SK + ++ +F + P+ S K+LR+ L++++
Sbjct: 486 SQATEDEIKQYISKQVIFYKRIKRVF-FIEAIPKAPSGKILRKNLKEKL 533
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 5/129 (3%)
Query: 586 KGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAIS 645
KG R GD+ G++ Q R + + G + E+E + + E++ + A I
Sbjct: 413 KGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLXK-HEAVXDVAVIG 471
Query: 646 VSPAGGGPEVLVIFVVLK---KGFTSQPDKLKMIFSKAIQSKLNPLFKVVPEFPRTASNK 702
P EV F+VLK +G + D ++ + + K + V E PRTAS K
Sbjct: 472 -KPDEEAGEVPKAFIVLKPEYRGKVDEEDIIEWVRERISGYKRVREVEFVEELPRTASGK 530
Query: 703 LLRRVLRDQ 711
LLRR+LR++
Sbjct: 531 LLRRLLREK 539
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 108/528 (20%), Positives = 191/528 (36%), Gaps = 76/528 (14%)
Query: 221 LVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSK 280
+ AN ++ D + + +P V+ +LA G + F EIA + + S
Sbjct: 101 IAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASN 160
Query: 281 AKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVD 340
K I T+ + + PL + +V+ I ++ +P+ E L + + S
Sbjct: 161 TKLIITEARYVDKIK--PLQND-------DGVVIVCIDDNESVPIPEGCLRFTELTQST- 210
Query: 341 YHPRPNYYSPVYNPV----DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKV 396
S V + V D VV + +SSGTTG PK + T + A+ +D +
Sbjct: 211 -----TEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQ---QVDGEN 262
Query: 397 GDVYCWPTNLGWVMGPV--------ILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTV 448
++Y ++ + P+ I+ GA + + + + +Q VTV
Sbjct: 263 PNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLL-ELIQRCKVTV 321
Query: 449 LGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTE 508
VP +V A ++ E D + IR S + + +++K + + G TE
Sbjct: 322 APMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTE 381
Query: 509 LSSAYIQGSLLQPQAF----GAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLG 564
+ F GA T A + I+D PD
Sbjct: 382 AGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVD------PD---------------- 419
Query: 565 ASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGY--------------IIVQGR 610
D L E+ RG + KG G+ + + R
Sbjct: 420 TGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDR 479
Query: 611 ADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQP 670
+ + G + + E+E + I + A +++ G EV V FVV K
Sbjct: 480 LKELIKYKGFQVAPAELEALL-IGHPDITDVAVVAMKEEAAG-EVPVAFVVKSKDSELSE 537
Query: 671 DKLKMIFSKAI--QSKLNPLFKVVPEFPRTASNKLLRRVLRDQIKHEL 716
D +K SK + ++N +F P+ S K+LR+ LR ++ + L
Sbjct: 538 DDVKQFVSKQVVFYKRINKVF-FTESIPKAPSGKILRKDLRAKLANGL 584
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 109/542 (20%), Positives = 204/542 (37%), Gaps = 75/542 (13%)
Query: 191 NTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDA-IAIDMPMTVRAVII 249
+ A VWR+ + +TYK+L+E +A+ + + + + I + M +I
Sbjct: 16 DQTAFVWRDAK--------ITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIIN 67
Query: 250 YLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL 309
+L + AG+ + + S A + S AK + + + L +++ L
Sbjct: 68 FLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTD----LPVRIVSEDNL 123
Query: 310 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTG 369
K I GN P E + + N+Y I+++SG+TG
Sbjct: 124 KDIFFTHKGN---TPNPEHAVKGDE-----------NFY------------IIYTSGSTG 157
Query: 370 EPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQ 429
PK + T + T +L+ G V+ + + + ++ S + G TL
Sbjct: 158 NPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAID 217
Query: 430 GSPLERSFGKF--VQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDD 487
+ R F ++ + + V + PS + +++F GE +
Sbjct: 218 KDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEV 277
Query: 488 DLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATM-----TAGLVILDEC 542
L + I+ + G TE + A + G + + + + + L+I+ E
Sbjct: 278 ARKLIERFPKATIMNTYGPTEATVA-VTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKED 336
Query: 543 GVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVG 602
G PD + GE+ + +G S + E+ + M G + GD
Sbjct: 337 GTIAPDGEK--GEI----VIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGD-AGYVEN 389
Query: 603 GYIIVQGRADDTMNLGGIKTSSVEIE---RVCDQADESILETAAISVSPAGGGPEVLVIF 659
G + GR D + L G + EIE R C S +E A I P G + +
Sbjct: 390 GLLFYNGRLDFQIKLHGYRMELEEIEHHLRAC-----SYVEGAVI--VPIKKGEKYDYLL 442
Query: 660 VVLKKGFTSQPDKLKMIFSKAIQSKLN---PLFKVVPEF------PRTASNKLLRRVLRD 710
V+ G S + K+ + AI+ +LN P + + +F P T + K+ R+ L
Sbjct: 443 AVVVPGEHSFEKEFKL--TSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLS 500
Query: 711 QI 712
++
Sbjct: 501 EV 502
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 109/542 (20%), Positives = 204/542 (37%), Gaps = 75/542 (13%)
Query: 191 NTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDA-IAIDMPMTVRAVII 249
+ A VWR+ + +TYK+L+E +A+ + + + + I + M +I
Sbjct: 16 DQTAFVWRDAK--------ITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIIN 67
Query: 250 YLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL 309
+L + AG+ + + S A + S AK + + + L +++ L
Sbjct: 68 FLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTD----LPVRIVSEDNL 123
Query: 310 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTG 369
K I GN P E + + N+Y I+++SG+TG
Sbjct: 124 KDIFFTHKGN---TPNPEHAVKGDE-----------NFY------------IIYTSGSTG 157
Query: 370 EPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQ 429
PK + T + T +L+ G V+ + + + ++ S + G TL
Sbjct: 158 NPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAID 217
Query: 430 GSPLERSFGKF--VQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDD 487
+ R F ++ + + V + PS + +++F GE +
Sbjct: 218 KDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEV 277
Query: 488 DLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATM-----TAGLVILDEC 542
L + I+ + G TE + A + G + + + + + L+I+ E
Sbjct: 278 ARKLIERFPKATIMNTYGPTEATVA-VTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKED 336
Query: 543 GVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVG 602
G PD + GE+ + +G S + E+ + M G + GD
Sbjct: 337 GTIAPDGEK--GEI----VIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGD-AGYVEN 389
Query: 603 GYIIVQGRADDTMNLGGIKTSSVEIE---RVCDQADESILETAAISVSPAGGGPEVLVIF 659
G + GR D + L G + EIE R C S +E A I P G + +
Sbjct: 390 GLLFYNGRLDFQIKLHGYRMELEEIEHHLRAC-----SYVEGAVI--VPIKKGEKYDYLL 442
Query: 660 VVLKKGFTSQPDKLKMIFSKAIQSKLN---PLFKVVPEF------PRTASNKLLRRVLRD 710
V+ G S + K+ + AI+ +LN P + + +F P T + K+ R+ L
Sbjct: 443 AVVVPGEHSFEKEFKL--TSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLS 500
Query: 711 QI 712
++
Sbjct: 501 EV 502
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 110/519 (21%), Positives = 191/519 (36%), Gaps = 58/519 (11%)
Query: 210 MTYKEL-REQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
++Y EL R L + KGD + +P I++ A++ AG VV++ S
Sbjct: 56 LSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYSHR 115
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
E+ ++ + K +L G R+ ++S L + L ++ + L Q
Sbjct: 116 QYELNAFIKQIQPK-------LLIGSRQHEVFSNNQFIDSLHDVNLSP---EIILMLNHQ 165
Query: 329 --DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLS---SIR 383
D D++ + P + P D V S G+TG PK IP T S+R
Sbjct: 166 ATDFGLLDWIET----PAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVR 221
Query: 384 CTAEGWA-HIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQ 442
+AE + + ++ P N + P L G + PL + +Q
Sbjct: 222 ASAEICGLNSNTRLLCALPAPHNF-MLSSPGALGVLHAGGCVVMAPNPEPL--NCFSIIQ 278
Query: 443 DAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE 502
V + VPS V W + D + G S + L N ++
Sbjct: 279 RHQVNMASLVPSAVIMWLE-KAAQYKDQIQSLKLLQVGGAS-FPESLARQVPEVLNCKLQ 336
Query: 503 SCGGTELSSAYIQGSLLQPQAFGAFSTA----TMTAGLVILDECGVPYPDDQPCVGEVGL 558
G ++ + + L F+T + + I+DE P+ GE+G+
Sbjct: 337 QVFG--MAEGLVNYTRLDDSDEQIFTTQGRPISSDDEIKIVDEQYREVPE-----GEIGM 389
Query: 559 --------FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGR 610
F Y + + E+ Y+ Y G ++R D G + V GR
Sbjct: 390 LATRGPYTFCGYYQSPEHNSQVFDEDNYY-----YSGDLVQRTPD-------GNLRVVGR 437
Query: 611 ADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQP 670
D +N GG K +S EIE++ E ++ A +++ G + V +
Sbjct: 438 IKDQINRGGEKIASEEIEKLILLHPE-VMHAALVAIVDEQFGEKSCAFIVSRNPELKAVV 496
Query: 671 DKLKMIFSKAIQSKLNPLFKVVPEFPRTASNKLLRRVLR 709
+ ++ Q KL K++ P TA K+ ++ LR
Sbjct: 497 LRRHLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLR 535
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 116/523 (22%), Positives = 194/523 (37%), Gaps = 55/523 (10%)
Query: 202 CDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVV 260
+ +A + ++Y EL + VAN L GD +A +V A+++YLA + AG V
Sbjct: 21 IETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVY 80
Query: 261 VSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGND 320
+ + ++ E+ D+ + K++ P K + AI
Sbjct: 81 LPLNTAYTLHEL---------------DYFITDAE-----PKIVVCDPSKRDGIAAIAAK 120
Query: 321 VGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKA--IPWTQ 378
VG + + L+ + + + D + IL++SGTTG K +
Sbjct: 121 VGATVETLGPDGRGSLTDAAAGASEAFAT-IDRGADDLAAILYTSGTTGRSKGAXLSHDN 179
Query: 379 LSSIRCT-AEGWAHI--DLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLER 435
L+S T + W D+ + + + T+ +V V LF+ G+ + L + P
Sbjct: 180 LASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFA---RGSXIFLPKFDP--- 233
Query: 436 SFGKFVQ-DAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSK 494
K + A TVL VP+ + L R F S D S+K
Sbjct: 234 --DKILDLXARATVLXGVPTFYTRLLQSPRLTKETTGHXRLFISGSAPLLADTHREWSAK 291
Query: 495 AWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCV 553
+ A++E G TE ++ + GA A + D E G P
Sbjct: 292 TGH-AVLERYGXTE-TNXNTSNPYDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGX 349
Query: 554 GEV---GLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGR 610
EV +F Y ++ + ++ +F GD+ K GY+ + GR
Sbjct: 350 IEVKGPNVFKGYWRXPEKTKSEFRDDGFFI------------TGDLGKIDERGYVHILGR 397
Query: 611 ADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQP 670
D + GG EIE D A ++E+A I V A G V + V K +
Sbjct: 398 GKDLVITGGFNVYPKEIESEID-AXPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEA 456
Query: 671 DKLKMIFSKAIQSKLNPLFKVVPEFPRTASNKLLRRVLRDQIK 713
L + + + K V + PR K+ + VLR+ K
Sbjct: 457 QVLHGLDGQLAKFKXPKKVIFVDDLPRNTXGKVQKNVLRETYK 499
>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
pdb|3ITE|B Chain B, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
Length = 562
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 106/490 (21%), Positives = 176/490 (35%), Gaps = 111/490 (22%)
Query: 211 TYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAR 270
TYK+L E VAN + G AIA+ + ++ A I + I +G V I
Sbjct: 57 TYKKLNETANQVANLIIHASLHGRAIAVSLDRSLIAFAIIVGIXKSGNTYVPIEAGLPND 116
Query: 271 EIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDL 330
+ LR S+A F D G + P +KVL ++
Sbjct: 117 RKSFLLRDSRAAXAFVCDNNFD-GVELPPETKVLDT---------------------KNQ 154
Query: 331 SWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA 390
S+ + LS+ D N Y P + +L++SG+TG PK + ++ ++ ++ W
Sbjct: 155 SFIENLSTQDTSDILNNY-----PENLDAYLLYTSGSTGTPKGVRVSR-HNLSSFSDAWG 208
Query: 391 HI-------DLKVG-------------DVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430
+ L++G DV+ L W G + G L+
Sbjct: 209 KLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEXFLAWRFGLCA-----VTGERLSXLDD 263
Query: 431 SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSN-VDDDL 489
P R+F ++ GVT G VPSL+ + L D + GE +
Sbjct: 264 LP--RTF----RELGVTHAGIVPSLL----DQTGLVPEDAPHLVYLGVGGEKXTPRTQQI 313
Query: 490 WLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDD 549
W SS A++ G TE+ T +AG ++ D D
Sbjct: 314 WSSSDRV--ALVNVYGPTEV-------------------TIGCSAGRILPDS-------D 345
Query: 550 QPCV----GEVGLFPLYLGASDRLLNADHEEVYFRG---------MPMYKGMC------L 590
C+ G+ L G+++ + E+ G P KG C
Sbjct: 346 TRCIGHPLGDSVAHVLAPGSNEHVKKGXAGELVIEGSLVANGYLNRPDAKGFCDINGRKX 405
Query: 591 RRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAG 650
R GDI++ I+ GR D+ + + G + E+ V + ++ + ++ G
Sbjct: 406 YRTGDIVRXDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPG 465
Query: 651 GGPEVLVIFV 660
+ LV FV
Sbjct: 466 TSKQFLVSFV 475
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 91/369 (24%), Positives = 143/369 (38%), Gaps = 41/369 (11%)
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVG--DVYCWPTNLGWVMG--PVILF 416
I ++SGTTG PKA Q ++ + L+ G +V L V+G V++
Sbjct: 158 IFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVA 217
Query: 417 SSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEG--LDWTKIR 474
+ L+G + + + P++ + VQ VT L P+ + A G L +R
Sbjct: 218 ALALDGTYVVVEEFRPVDAL--QLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLR 275
Query: 475 SFASTGETSNVDDDLWLSSKAWYNAIIESCGGTE-LSSAYIQ----GSLLQPQAFGAFST 529
G T D L + + + G TE ++S Y++ G+ + P F
Sbjct: 276 HVTFAGATMP-DAVLETVHQHLPGEKVNAYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRI 334
Query: 530 ATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMC 589
+ G+ D+ GE G L + ASD V + P
Sbjct: 335 VRIGGGV-----------DEIVANGEEG--ELIVAASDSAF------VGYLNQPQATAEK 375
Query: 590 LR----RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAIS 645
L+ R D+ T G + + GR DD + GG EIERV A + E I
Sbjct: 376 LQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTA-PGVTEVVVIG 434
Query: 646 VSPAGGGPEVLVIFVVLKKGFTSQPDKLKMI--FSKAIQSKLNPLFKVVPEFPRTASNKL 703
++ G V VV + G T D L S+ K + ++ + P+ A NK+
Sbjct: 435 LADQRWGQSVTAC-VVPRLGETLSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKV 493
Query: 704 LRRVLRDQI 712
LRR L Q+
Sbjct: 494 LRRQLVQQV 502
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 94/387 (24%), Positives = 148/387 (38%), Gaps = 44/387 (11%)
Query: 346 NYYSPVYNPVDAVVN---ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVG--DVY 400
+Y P+ +P I ++SGTTG PKA Q ++ + L+ G +V
Sbjct: 140 SYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVV 199
Query: 401 CWPTNLGWVMG--PVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKA 458
L V+G V++ + L+G + + + P++ + VQ VT L P+ + A
Sbjct: 200 LGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDAL--QLVQQEQVTSLFATPTHLDA 257
Query: 459 WRNTNCLEG--LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTE-LSSAYIQ 515
G L +R G T D L + + G TE ++S Y++
Sbjct: 258 LAAAAAHAGSSLKLDSLRHVTFAGATMP-DAVLETVHQHLPGEKVNGYGTTEAMNSLYMR 316
Query: 516 ----GSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLN 571
G+ + P F + G+ D+ GE G L + ASD
Sbjct: 317 QPKTGTEMAPGFFSEVRIVRIGGGV-----------DEIVANGEEG--ELIVAASDSAF- 362
Query: 572 ADHEEVYFRGMPMYKGMCLR----RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEI 627
V + P L+ R D+ T G + + GR DD + GG EI
Sbjct: 363 -----VGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEI 417
Query: 628 ERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMI--FSKAIQSKL 685
ERV A + E I ++ G V VV + G T D L S+ K
Sbjct: 418 ERVLGTA-PGVTEVVVIGLADQRWGQSVTAC-VVPRLGETLSADALDTFCRSSELADFKR 475
Query: 686 NPLFKVVPEFPRTASNKLLRRVLRDQI 712
+ ++ + P+ A NK+LRR L Q+
Sbjct: 476 PKRYFILDQLPKNALNKVLRRQLVQQV 502
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 91/369 (24%), Positives = 142/369 (38%), Gaps = 41/369 (11%)
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVG--DVYCWPTNLGWVMG--PVILF 416
I ++SGTTG PKA Q ++ + L+ G +V L V+G V++
Sbjct: 158 IFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVA 217
Query: 417 SSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEG--LDWTKIR 474
+ L+G + + + P++ + VQ VT L P+ + A G L +R
Sbjct: 218 ALALDGTYVVVEEFRPVDAL--QLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLR 275
Query: 475 SFASTGETSNVDDDLWLSSKAWYNAIIESCGGTE-LSSAYIQ----GSLLQPQAFGAFST 529
G T D L + + G TE ++S Y++ G+ + P F
Sbjct: 276 HVTFAGATMP-DAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRI 334
Query: 530 ATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMC 589
+ G+ D+ GE G L + ASD V + P
Sbjct: 335 VRIGGGV-----------DEIVANGEEG--ELIVAASDSAF------VGYLNQPQATAEK 375
Query: 590 LR----RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAIS 645
L+ R D+ T G + + GR DD + GG EIERV A + E I
Sbjct: 376 LQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTA-PGVTEVVVIG 434
Query: 646 VSPAGGGPEVLVIFVVLKKGFTSQPDKLKMI--FSKAIQSKLNPLFKVVPEFPRTASNKL 703
++ G V VV + G T D L S+ K + ++ + P+ A NK+
Sbjct: 435 LADQRWGQSVTAC-VVPRLGETLSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKV 493
Query: 704 LRRVLRDQI 712
LRR L Q+
Sbjct: 494 LRRQLVQQV 502
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 94/387 (24%), Positives = 148/387 (38%), Gaps = 44/387 (11%)
Query: 346 NYYSPVYNPVDAVVN---ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVG--DVY 400
+Y P+ +P I ++SGTTG PKA Q ++ + L+ G +V
Sbjct: 140 SYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVV 199
Query: 401 CWPTNLGWVMG--PVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKA 458
L V+G V++ + L+G + + + P++ + VQ VT L P+ + A
Sbjct: 200 LGLMPLYHVVGFFAVLVAALALDGTYVVIEEFRPVDAL--QLVQQEQVTSLFATPTHLDA 257
Query: 459 WRNTNCLEG--LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTE-LSSAYIQ 515
G L +R G T D L + + G TE ++S Y++
Sbjct: 258 LAAAAAHAGSSLKLDSLRHVTFAGATMP-DAVLETVHQHLPGEKVNIYGTTEAMNSLYMR 316
Query: 516 ----GSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLN 571
G+ + P F + G+ D+ GE G L + ASD
Sbjct: 317 QPKTGTEMAPGFFSEVRIVRIGGGV-----------DEIVANGEEG--ELIVAASDSAF- 362
Query: 572 ADHEEVYFRGMPMYKGMCLR----RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEI 627
V + P L+ R D+ T G + + GR DD + GG EI
Sbjct: 363 -----VGYLNQPEATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEI 417
Query: 628 ERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMI--FSKAIQSKL 685
ERV A + E I ++ G V VV + G T D L S+ K
Sbjct: 418 ERVLGTA-PGVTEVVVIGLADQRWGQSVTAC-VVPRLGETLSADALDTFCRSSELADFKR 475
Query: 686 NPLFKVVPEFPRTASNKLLRRVLRDQI 712
+ ++ + P+ A NK+LRR L Q+
Sbjct: 476 PKRYFILDQLPKNALNKVLRRQLVQQV 502
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 53/123 (43%), Gaps = 4/123 (3%)
Query: 592 RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGG 651
R D+ T G + + GR DD + GG EIERV A + E I ++
Sbjct: 382 RTSDVAVWTPEGTVRILGRVDDXIISGGENIHPSEIERVLGTA-PGVTEVVVIGLADQRW 440
Query: 652 GPEVLVIFVVLKKGFTSQPDKLKMI--FSKAIQSKLNPLFKVVPEFPRTASNKLLRRVLR 709
G V VV + G T D L S+ K + ++ + P+ A NK+LRR L
Sbjct: 441 GQSVTAC-VVPRLGETLSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLV 499
Query: 710 DQI 712
Q+
Sbjct: 500 QQV 502
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 57/139 (41%), Gaps = 9/139 (6%)
Query: 578 YFRGMPMYKGMCLRRHGDIIKRTVG-----GYIIVQGRADDTMNLGGIKTSSVEIERVCD 632
Y+R MP R G I +G GY+ + GR D + GG EIE D
Sbjct: 361 YWR-MPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEID 419
Query: 633 QADESILETAAISVSPAGGGPEVLVIFVVLKKGFT-SQPDKLKMIFSKAIQSKLNPLFKV 691
A ++E+A I V A G E + FVVL + F S+ L + + +
Sbjct: 420 -AMPGVVESAVIGVPHADFG-EGVTAFVVLXREFAPSEAQVLHGLDGQLAXFXMPXXVIF 477
Query: 692 VPEFPRTASNKLLRRVLRD 710
V + PR + VLR+
Sbjct: 478 VDDLPRNTMGAVQXNVLRE 496
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 202 CDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVV 260
+ +A + ++Y EL + VAN L GD +A +V A+++YLA + AG V
Sbjct: 21 IETAAGDXISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVY 80
Query: 261 VSIADSFAAREI 272
+ + ++ E+
Sbjct: 81 LPLNTAYTLHEL 92
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 58/144 (40%), Gaps = 3/144 (2%)
Query: 340 DYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDV 399
D P P +P D + ++++SGTTG PK +P + + A + D D
Sbjct: 160 DAEPGPVTGAPGPGAED-MAYVIYTSGTTGNPKGVPVRHANVLALLAGAPSVFDFSGDDR 218
Query: 400 YCWPTNLGWVMGPVILFSSFLNGATLAL--YQGSPLERSFGKFVQDAGVTVLGTVPSLVK 457
+ +L + ++ +F GA L + + + + + D GVTV+ P+
Sbjct: 219 WLLFHSLSFDFSVWEIWGAFSTGAELVVLPHWAARTPEQYLAVIIDRGVTVINQTPTAFL 278
Query: 458 AWRNTNCLEGLDWTKIRSFASTGE 481
A G D + +R GE
Sbjct: 279 ALTEAAVRGGRDVSGLRYVIFGGE 302
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 93/387 (24%), Positives = 147/387 (37%), Gaps = 44/387 (11%)
Query: 346 NYYSPVYNPVDAVVN---ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVG--DVY 400
+Y P+ +P I ++SGTTG PKA Q ++ + L+ G +V
Sbjct: 140 SYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVV 199
Query: 401 CWPTNLGWVMG--PVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKA 458
L V+G V++ + L+G + + + P++ + VQ VT L P+ + A
Sbjct: 200 LGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDAL--QLVQQEQVTSLFATPTHLDA 257
Query: 459 WRNTNCLEG--LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTE-LSSAYIQ 515
G L +R G T D L + + G TE ++S Y++
Sbjct: 258 LAAAAAHAGSSLKLDSLRHVTFAGATMP-DAVLETVHQHLPGEKVNIYGTTEAMNSLYMR 316
Query: 516 ----GSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLN 571
G+ + P F + G+ D+ GE G L + ASD
Sbjct: 317 QPKTGTEMAPGFFSEVRIVRIGGGV-----------DEIVANGEEG--ELIVAASDSAF- 362
Query: 572 ADHEEVYFRGMPMYKGMCLR----RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEI 627
V + P L+ R D+ T G + + GR D + GG EI
Sbjct: 363 -----VGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVPDMIISGGENIHPSEI 417
Query: 628 ERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMI--FSKAIQSKL 685
ERV A + E I ++ G V VV + G T D L S+ K
Sbjct: 418 ERVLGTAP-GVTEVVVIGLADQRWGQSVTAC-VVPRLGETLSADALDTFCRSSELADFKR 475
Query: 686 NPLFKVVPEFPRTASNKLLRRVLRDQI 712
+ ++ + P+ A NK+LRR L Q+
Sbjct: 476 PKRYFILDQLPKNALNKVLRRQLVQQV 502
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 6/101 (5%)
Query: 358 VVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFS 417
V ++F+SG+TG PK + + ++ T G + +V+ + + W + LF
Sbjct: 216 VACVMFTSGSTGRPKGV-MSPHRALTGTYLGQDYAGFGPDEVFLQCSPVSWDAFGLELFG 274
Query: 418 SFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVPSL 455
+ L GA L G PLE G+ V GVT+L SL
Sbjct: 275 ALLFGARCVLQSGQNPDPLE--IGELVARHGVTMLQLSASL 313
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 83/380 (21%), Positives = 148/380 (38%), Gaps = 42/380 (11%)
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTA-EGWAHIDLKV--GDVYCWPTNLGWVMGPVILFS 417
I+++SG+TG PK + Q+S+ + W D V G ++ + + + L+
Sbjct: 148 IIYTSGSTGNPKGV---QISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYP 204
Query: 418 SFLNGATLALYQGSPLERSFGKF--VQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTK--- 472
+G TL + + F ++ +G+ V + PS V+ CL +++
Sbjct: 205 CLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQM-----CLMDPGFSQDLL 259
Query: 473 --IRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTE----LSSAYIQGSLLQPQAFGA 526
+F GE V L + I + G TE ++S I ++
Sbjct: 260 PHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLP 319
Query: 527 FSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYK 586
A + I+DE G P P+ + GE+ + G S E+ + ++
Sbjct: 320 VGFAKPDMNIFIMDEEGQPLPEGEK--GEI----VIAGPSVSRGYLGEPELTEKAFFSHE 373
Query: 587 GMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISV 646
G R GD G I QGR D + L G + EIE Q+ + +A +
Sbjct: 374 GQWAYRTGD-AGFIQDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQ--YVRSAVVIP 430
Query: 647 SPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVVPEF------PRTAS 700
G E L+ +V ++ + +L K + + L P + + +F TA+
Sbjct: 431 YQPNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKELAASL-PAYMIPRKFIYQDHIQMTAN 489
Query: 701 NKLLRRVLRDQIKHELSVRS 720
K+ R+ +I E+ VRS
Sbjct: 490 GKIDRK----RIGEEVLVRS 505
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 57/142 (40%), Gaps = 12/142 (8%)
Query: 578 YFRGMPMYKGMCLRRHGDIIKRTVG-----GYIIVQGRADDTMNLGGIKTSSVEIERVCD 632
Y+R MP R G I +G GY+ + GR D + GG EIE D
Sbjct: 361 YWR-MPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEID 419
Query: 633 QADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQ---PDKLKMIFSKAIQSKLNPLF 689
A ++E+A I V A G E + FVVL + F ++L + P
Sbjct: 420 -AMPGVVESAVIGVPHADFG-EGVTAFVVLXREFAPSEILAEELXAFVXDRLAXFXMPXX 477
Query: 690 KV-VPEFPRTASNKLLRRVLRD 710
+ V + PR + VLR+
Sbjct: 478 VIFVDDLPRNTMGAVQXNVLRE 499
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 202 CDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVV 260
+ +A + ++Y EL + VAN L GD +A +V A+++YLA + AG V
Sbjct: 21 IETAAGDXISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVY 80
Query: 261 VSIADSFAAREI 272
+ + ++ E+
Sbjct: 81 LPLNTAYTLHEL 92
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 12/109 (11%)
Query: 579 FRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESI 638
F+G P Y GDI T ++ GR D + G + +E+E V Q ++S
Sbjct: 376 FKGQPAY------HTGDIGSLTEDNILLYGGRLDFQIKYAGYR---IELEDVSQQLNQSP 426
Query: 639 LETAAISVSPAGGGPEV--LVIFVVLKKGFTSQPDKLKMIFSKAIQSKL 685
+ +A++V +V L+ ++V+K G + D+ ++ +KAI++ +
Sbjct: 427 MVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDR-ELELTKAIKASV 474
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 73/168 (43%), Gaps = 12/168 (7%)
Query: 211 TYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAR 270
TY+ L + L+A L + ID +++++I+ A LA + I
Sbjct: 28 TYQNLYCEASLLAKRLKAYQQSRVGLYIDN--SIQSIILIHACWLANIEIAMINTRLTPN 85
Query: 271 EIATRLRVSKAKGIF-TQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQD 329
E+ ++R + IF T LRG + L + L + N +GI + D
Sbjct: 86 EMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGL--LDNTMGI---QYD 140
Query: 330 LSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWT 377
S + + V N + +N +D + +I+F+SGTTG KA+P T
Sbjct: 141 TSNE---TVVPKESPSNILNTSFN-LDDIASIMFTSGTTGPQKAVPQT 184
>pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains
pdb|4DG9|A Chain A, Structure Of Holo-Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains Bound To Vinylsulfonamide
Inhibitor
Length = 620
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 355 VDAVVNILFSSGTTGEPKAIPWTQLSSIR-CTAEGWAHIDLKVGDVYCWPTNLGWVMGPV 413
D + I FSSGTTG PKAI T R C + + ++ + P L + +
Sbjct: 163 ADQIAYINFSSGTTGRPKAIACTHAGITRLCLGQSFLAFAPQMRFLVNSP--LSFDAATL 220
Query: 414 ILFSSFLNGATLALYQGSPLE 434
++ + LNG L PL+
Sbjct: 221 EIWGALLNGGCCVLNDLGPLD 241
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 202 CDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVV 260
+ +A + ++Y EL + VAN L GD +A +V A+++YLA + AG V
Sbjct: 21 IETAAGDXISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVY 80
Query: 261 VSIADSFAAREI 272
+ + ++ E+
Sbjct: 81 LPLNTAYTLHEL 92
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 51/138 (36%), Gaps = 7/138 (5%)
Query: 578 YFRGMPMYKGMCLRRHGDIIKRTVG-----GYIIVQGRADDTMNLGGIKTSSVEIERVCD 632
Y+R MP R G I +G GY+ + GR D + GG EIE D
Sbjct: 361 YWR-MPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEID 419
Query: 633 QADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVV 692
A ++E+A I V A G V + V + L + + + V
Sbjct: 420 -AMPGVVESAVIGVPHADFGEGVTAVVVRDXGATIDEAQVLHGLDGQLAXFXMPXXVIFV 478
Query: 693 PEFPRTASNKLLRRVLRD 710
+ PR + VLR+
Sbjct: 479 DDLPRNTMGAVQXNVLRE 496
>pdb|4AC0|A Chain A, Tetr(B) In Complex With Minocycline And Magnesium
Length = 202
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 90 LDQSKLTNLGNALEIHGPKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALK 141
LD+SK+ N +ALE LL + +T+ +L QK VE P YW + K
Sbjct: 3 LDKSKVIN--SALE-----LLNEVGIEGLTTRKLAQKLGVEQPTLYWHVKNK 47
>pdb|2NS7|A Chain A, How An In Vitro Selected Peptide Mimics The Antibiotic
Tetracycline To Induce Tet Repressor
pdb|2NS7|B Chain B, How An In Vitro Selected Peptide Mimics The Antibiotic
Tetracycline To Induce Tet Repressor
pdb|2NS7|C Chain C, How An In Vitro Selected Peptide Mimics The Antibiotic
Tetracycline To Induce Tet Repressor
pdb|2NS7|D Chain D, How An In Vitro Selected Peptide Mimics The Antibiotic
Tetracycline To Induce Tet Repressor
pdb|2NS8|A Chain A, How An In Vitro Selected Peptide Mimics The Antibiotic
Tetracycline To Induce Tet Repressor
pdb|2NS8|B Chain B, How An In Vitro Selected Peptide Mimics The Antibiotic
Tetracycline To Induce Tet Repressor
pdb|2NS8|C Chain C, How An In Vitro Selected Peptide Mimics The Antibiotic
Tetracycline To Induce Tet Repressor
pdb|2NS8|D Chain D, How An In Vitro Selected Peptide Mimics The Antibiotic
Tetracycline To Induce Tet Repressor
pdb|3ZQF|A Chain A, Structure Of Tetracycline Repressor In Complex With
Antiinducer Peptide-Tap1
pdb|3ZQG|A Chain A, Structure Of Tetracycline Repressor In Complex With
Antiinducer Peptide-Tap2
pdb|3ZQH|A Chain A, Structure Of Tetracycline Repressor In Complex With
Inducer Peptide-Tip3
pdb|3ZQI|A Chain A, Structure Of Tetracycline Repressor In Complex With
Inducer Peptide-Tip2
pdb|3ZQI|B Chain B, Structure Of Tetracycline Repressor In Complex With
Inducer Peptide-Tip2
Length = 208
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 90 LDQSKLTNLGNALEIHGPKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALK 141
LD+SK+ N +ALE LL + +T+ +L QK VE P YW + K
Sbjct: 4 LDKSKVIN--SALE-----LLNEVGIEGLTTRKLAQKLGVEQPTLYWHVKNK 48
>pdb|3URZ|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacova_03105)
From Bacteroides Ovatus Atcc 8483 At 2.19 A Resolution
pdb|3URZ|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacova_03105)
From Bacteroides Ovatus Atcc 8483 At 2.19 A Resolution
Length = 208
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 663 KKGFTSQPDKLKMIFSKAIQSKLNPLFKVVPEFPRTASNKLLRRVLR 709
K + D L +F+ + N L KV+ FP T + K L ++LR
Sbjct: 155 KXQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDKILR 201
>pdb|2VKV|A Chain A, Tetr (Bd) Variant L17g With Reverse Phenotype
Length = 208
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 15/56 (26%)
Query: 90 LDQSKLTN----LGNALEIHGPKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALK 141
LD+SK+ N LGN + I G +T+ +L QK VE P YW + K
Sbjct: 4 LDKSKVINSALELGNEVGIEG-----------LTTRKLAQKLGVEQPTLYWHVKNK 48
>pdb|1A6I|A Chain A, Tet Repressor, Class D Variant
Length = 217
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 90 LDQSKLTNLGNALEIHGPKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALK 141
LD+SK+ N +ALE LL + +T+ +L QK VE P YW + K
Sbjct: 3 LDKSKVIN--SALE-----LLNEVGIEGLTTRKLAQKLGVEQPTLYWHVKNK 47
>pdb|2XGC|B Chain B, Crystal Structure Of A Designed Heterodimeric Variant
T-A(I) B Of The Tetracycline Repressor
pdb|2XGE|B Chain B, Crystal Structure Of A Designed Heterodimeric Variant
T-A(A) B Of The Tetracycline Repressor
Length = 211
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 90 LDQSKLTNLGNALEIHGPKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALK 141
LD+SK+ N +ALE LL + +T+ +L QK VE P YW + K
Sbjct: 7 LDKSKVIN--SALE-----LLNEVGIEGLTTRKLAQKLGVEQPTLYWHVKNK 51
>pdb|2XGE|A Chain A, Crystal Structure Of A Designed Heterodimeric Variant
T-A(A) B Of The Tetracycline Repressor
Length = 208
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 90 LDQSKLTNLGNALEIHGPKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALK 141
LD+SK+ N +ALE LL + +T+ +L QK VE P YW + K
Sbjct: 4 LDKSKVIN--SALE-----LLNEVGIEGLTTRKLAQKLGVEQPTLYWHVKNK 48
>pdb|2XGC|A Chain A, Crystal Structure Of A Designed Heterodimeric Variant
T-A(I) B Of The Tetracycline Repressor
Length = 208
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 90 LDQSKLTNLGNALEIHGPKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALK 141
LD+SK+ N +ALE LL + +T+ +L QK VE P YW + K
Sbjct: 4 LDKSKVIN--SALE-----LLNEVGIEGLTTRKLAQKLGVEQPTLYWHVKNK 48
>pdb|3FK6|A Chain A, Crystal Structure Of Tetr Triple Mutant (H64k, S135l,
S138i)
pdb|3FK6|B Chain B, Crystal Structure Of Tetr Triple Mutant (H64k, S135l,
S138i)
pdb|3FK7|A Chain A, Crystal Structure Of Tetr Triple Mutant (H64k, S135l,
S138i) In Complex With 4-Ddma-Atc
pdb|3FK7|B Chain B, Crystal Structure Of Tetr Triple Mutant (H64k, S135l,
S138i) In Complex With 4-Ddma-Atc
Length = 208
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 90 LDQSKLTNLGNALEIHGPKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALK 141
LD+SK+ N +ALE LL + +T+ +L QK VE P YW + K
Sbjct: 4 LDKSKVIN--SALE-----LLNEVGIEGLTTRKLAQKLGVEQPTLYWHVKNK 48
>pdb|2XGD|A Chain A, Crystal Structure Of A Designed Homodimeric Variant
T-A(L)a( L) Of The Tetracycline Repressor
Length = 208
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 90 LDQSKLTNLGNALEIHGPKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALK 141
LD+SK+ N +ALE LL + +T+ +L QK VE P YW + K
Sbjct: 4 LDKSKVIN--SALE-----LLNEVGIEGLTTRKLAQKLGVEQPTLYWHVKNK 48
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,948,683
Number of Sequences: 62578
Number of extensions: 964985
Number of successful extensions: 1966
Number of sequences better than 100.0: 58
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 1852
Number of HSP's gapped (non-prelim): 93
length of query: 722
length of database: 14,973,337
effective HSP length: 106
effective length of query: 616
effective length of database: 8,340,069
effective search space: 5137482504
effective search space used: 5137482504
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)