Query 004952
Match_columns 722
No_of_seqs 370 out of 3409
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 10:50:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004952.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004952hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vsq_A Surfactin synthetase su 100.0 5E-92 1.7E-96 870.2 25.1 624 20-713 308-959 (1304)
2 1pg4_A Acetyl-COA synthetase; 100.0 5.2E-86 1.8E-90 761.7 53.5 577 120-716 23-623 (652)
3 1ry2_A Acetyl-coenzyme A synth 100.0 1.2E-85 3.9E-90 759.0 52.4 583 114-715 19-638 (663)
4 3g7s_A Long-chain-fatty-acid-- 100.0 5.1E-81 1.7E-85 707.7 41.5 502 185-720 28-548 (549)
5 4dg8_A PA1221; ANL superfamily 100.0 4.3E-81 1.5E-85 714.8 41.2 465 185-715 36-514 (620)
6 3etc_A AMP-binding protein; ad 100.0 2.9E-80 9.9E-85 704.1 46.8 517 165-714 47-579 (580)
7 3ni2_A 4-coumarate:COA ligase; 100.0 2.4E-80 8.2E-85 700.1 45.4 488 185-714 31-535 (536)
8 4fuq_A Malonyl COA synthetase; 100.0 1.6E-79 5.6E-84 687.4 45.0 484 186-716 10-502 (503)
9 1mdb_A 2,3-dihydroxybenzoate-A 100.0 1.4E-79 4.9E-84 693.9 40.8 489 186-718 35-535 (539)
10 3r44_A Fatty acyl COA syntheta 100.0 1.5E-79 5E-84 690.3 39.5 482 185-717 25-516 (517)
11 3rg2_A Enterobactin synthase c 100.0 3.9E-78 1.3E-82 693.0 48.2 484 190-716 39-536 (617)
12 3e7w_A D-alanine--poly(phospho 100.0 2.4E-78 8.2E-83 680.0 45.3 481 185-719 10-508 (511)
13 1amu_A GRSA, gramicidin synthe 100.0 2.1E-78 7.3E-83 686.7 42.3 467 185-712 48-527 (563)
14 3fce_A D-alanine--poly(phospho 100.0 1.3E-78 4.5E-83 682.5 38.7 483 186-720 11-510 (512)
15 1t5h_X 4-chlorobenzoyl COA lig 100.0 1.6E-77 5.3E-82 672.2 46.6 473 186-713 12-503 (504)
16 2d1s_A Luciferase, luciferin 4 100.0 1.2E-77 4E-82 679.3 45.2 490 186-717 36-546 (548)
17 4gr5_A Non-ribosomal peptide s 100.0 4.5E-79 1.5E-83 694.6 32.6 471 185-711 84-568 (570)
18 3tsy_A Fusion protein 4-coumar 100.0 2.4E-78 8.4E-83 730.2 40.3 555 122-717 14-585 (979)
19 3c5e_A Acyl-coenzyme A synthet 100.0 8.4E-77 2.9E-81 674.7 47.8 515 163-715 27-563 (570)
20 3o83_A Peptide arylation enzym 100.0 1.3E-78 4.5E-83 686.8 32.6 491 185-715 39-541 (544)
21 3l8c_A D-alanine--poly(phospho 100.0 7.5E-78 2.6E-82 678.1 37.9 483 186-720 14-518 (521)
22 1v25_A Long-chain-fatty-acid-C 100.0 3.9E-78 1.3E-82 682.5 34.1 488 186-717 28-539 (541)
23 3ivr_A Putative long-chain-fat 100.0 4E-78 1.4E-82 678.1 32.2 483 185-719 15-506 (509)
24 3rix_A Luciferase, luciferin 4 100.0 3.3E-78 1.1E-82 684.8 31.2 497 186-718 30-545 (550)
25 2v7b_A Benzoate-coenzyme A lig 100.0 1.6E-75 5.6E-80 660.1 44.4 491 173-710 23-528 (529)
26 3nyq_A Malonyl-COA ligase; A/B 100.0 5.8E-76 2E-80 658.7 35.0 457 186-710 32-504 (505)
27 3ipl_A 2-succinylbenzoate--COA 100.0 1E-74 3.5E-79 649.4 40.5 482 185-715 10-498 (501)
28 3ite_A SIDN siderophore synthe 100.0 7.6E-74 2.6E-78 651.4 31.1 482 186-715 30-544 (562)
29 3kxw_A Saframycin MX1 syntheta 100.0 1.1E-72 3.6E-77 646.4 36.7 487 186-715 21-568 (590)
30 3gqw_A Fatty acid AMP ligase; 100.0 2.3E-70 7.8E-75 625.5 41.0 482 185-719 30-568 (576)
31 3t5a_A Long-chain-fatty-acid-- 100.0 1.8E-57 6.3E-62 507.0 24.6 387 185-610 33-480 (480)
32 4gs5_A Acyl-COA synthetase (AM 100.0 5.6E-56 1.9E-60 473.4 21.3 316 355-715 36-355 (358)
33 2y4o_A Phenylacetate-coenzyme 100.0 2.9E-50 1E-54 443.6 24.3 328 352-708 88-438 (443)
34 3qov_A Phenylacetate-coenzyme 100.0 7.3E-50 2.5E-54 439.5 26.4 324 352-706 81-429 (436)
35 2y27_A Phenylacetate-coenzyme 100.0 1.5E-48 5.3E-53 429.1 25.6 326 352-707 86-432 (437)
36 3hgu_A EHPF; phenazine, antibi 100.0 2.8E-32 9.5E-37 292.6 15.0 237 353-620 88-368 (369)
37 3lax_A Phenylacetate-coenzyme 99.6 3.3E-15 1.1E-19 129.1 9.6 94 609-705 1-101 (109)
38 3gxs_A Phenylacetate-coenzyme 99.5 1.5E-14 5.1E-19 124.7 9.0 94 609-706 1-102 (109)
39 4b2g_A GH3-1 auxin conjugating 98.7 1.1E-07 3.7E-12 104.8 15.0 71 591-663 412-493 (609)
40 4epl_A Jasmonic acid-amido syn 98.7 1.9E-07 6.6E-12 102.4 15.8 162 470-663 301-488 (581)
41 4eql_A 4-substituted benzoates 98.7 9.6E-08 3.3E-12 105.1 13.2 132 470-633 296-446 (581)
42 2jgp_A Tyrocidine synthetase 3 98.0 7.2E-08 2.4E-12 107.6 -7.5 126 19-152 380-515 (520)
43 4hvm_A Tlmii; PSI-biology, mid 97.4 3E-06 1E-10 93.6 -6.9 122 23-154 311-468 (493)
44 1l5a_A Amide synthase, VIBH; n 97.2 3.5E-06 1.2E-10 91.5 -9.2 129 18-157 283-421 (436)
45 2xhg_A Tyrocidine synthetase A 94.9 0.00064 2.2E-08 74.1 -7.0 116 21-147 317-457 (466)
46 1q9j_A PAPA5, polyketide synth 81.9 0.039 1.3E-06 58.8 -6.7 107 24-147 298-417 (422)
47 3rix_A Luciferase, luciferin 4 81.3 3.6 0.00012 45.2 8.8 100 355-459 34-136 (550)
48 2y27_A Phenylacetate-coenzyme 81.2 7.3 0.00025 41.2 11.0 100 189-290 88-192 (437)
49 2y4o_A Phenylacetate-coenzyme 80.0 8.3 0.00028 40.8 10.9 100 189-290 90-194 (443)
50 3g7s_A Long-chain-fatty-acid-- 79.4 9.5 0.00033 41.7 11.5 103 354-459 32-138 (549)
51 3qov_A Phenylacetate-coenzyme 79.0 8.7 0.0003 40.6 10.7 98 191-290 86-188 (436)
52 1v25_A Long-chain-fatty-acid-C 79.0 11 0.00037 41.2 11.7 100 354-459 31-133 (541)
53 3ivr_A Putative long-chain-fat 78.4 7 0.00024 42.3 9.9 95 354-458 19-116 (509)
54 3ni2_A 4-coumarate:COA ligase; 77.3 8.5 0.00029 42.0 10.2 97 354-458 35-134 (536)
55 1t5h_X 4-chlorobenzoyl COA lig 76.4 13 0.00045 40.0 11.4 98 354-459 15-117 (504)
56 2v7b_A Benzoate-coenzyme A lig 75.1 10 0.00034 41.3 10.0 95 354-458 36-133 (529)
57 3c5e_A Acyl-coenzyme A synthet 74.6 17 0.00057 40.0 11.8 101 354-459 56-160 (570)
58 3r44_A Fatty acyl COA syntheta 73.4 15 0.00051 39.7 10.9 95 354-456 29-126 (517)
59 3t5a_A Long-chain-fatty-acid-- 72.5 18 0.00061 38.5 11.1 105 354-462 37-149 (480)
60 1amu_A GRSA, gramicidin synthe 72.4 16 0.00054 40.1 10.8 96 354-459 52-150 (563)
61 3etc_A AMP-binding protein; ad 70.4 18 0.00062 39.8 10.8 95 354-453 69-166 (580)
62 1ry2_A Acetyl-coenzyme A synth 69.6 21 0.00073 40.0 11.3 97 354-454 95-195 (663)
63 4fuq_A Malonyl COA synthetase; 69.3 15 0.00053 39.5 9.7 80 375-455 28-110 (503)
64 3o83_A Peptide arylation enzym 67.4 20 0.00069 39.0 10.3 90 354-453 43-135 (544)
65 4gr5_A Non-ribosomal peptide s 67.4 22 0.00074 39.1 10.5 92 354-455 88-182 (570)
66 1pg4_A Acetyl-COA synthetase; 66.4 25 0.00086 39.3 11.0 96 354-453 89-187 (652)
67 3kxw_A Saframycin MX1 syntheta 65.4 31 0.0011 37.8 11.4 101 354-460 24-130 (590)
68 2d1s_A Luciferase, luciferin 4 63.1 21 0.00072 38.9 9.3 84 374-458 51-137 (548)
69 1mdb_A 2,3-dihydroxybenzoate-A 62.2 25 0.00084 38.3 9.7 90 354-453 38-130 (539)
70 3l8c_A D-alanine--poly(phospho 60.3 25 0.00086 37.9 9.3 90 354-453 17-109 (521)
71 3tsy_A Fusion protein 4-coumar 58.5 31 0.001 40.8 10.2 96 353-456 73-171 (979)
72 3fce_A D-alanine--poly(phospho 57.1 29 0.00099 37.3 9.1 89 354-452 14-105 (512)
73 3ipl_A 2-succinylbenzoate--COA 52.3 34 0.0012 36.6 8.6 90 354-453 14-103 (501)
74 3hgu_A EHPF; phenazine, antibi 49.5 39 0.0014 34.4 8.2 99 189-290 89-215 (369)
75 4dg8_A PA1221; ANL superfamily 49.5 51 0.0017 36.5 9.6 89 354-452 40-131 (620)
76 3ite_A SIDN siderophore synthe 49.4 66 0.0023 34.9 10.5 97 354-453 33-134 (562)
77 3ezx_A MMCP 1, monomethylamine 47.9 1.3E+02 0.0045 27.9 10.8 91 397-489 92-193 (215)
78 3gqw_A Fatty acid AMP ligase; 43.6 71 0.0024 34.7 9.6 86 373-459 47-142 (576)
79 3rg2_A Enterobactin synthase c 43.6 61 0.0021 35.8 9.1 89 355-453 39-130 (617)
80 3e7w_A D-alanine--poly(phospho 38.2 83 0.0028 33.6 8.9 88 354-451 14-105 (511)
81 2vsq_A Surfactin synthetase su 35.8 86 0.003 38.2 9.4 92 354-455 477-571 (1304)
82 3nyq_A Malonyl-COA ligase; A/B 35.7 91 0.0031 33.3 8.7 88 355-454 37-124 (505)
83 3vc3_A Beta-cyanoalnine syntha 32.7 1.1E+02 0.0036 31.0 8.0 92 190-288 49-141 (344)
84 4h1h_A LMO1638 protein; MCCF-l 31.8 1.4E+02 0.0046 30.0 8.6 70 230-299 9-97 (327)
85 3tbh_A O-acetyl serine sulfhyd 27.8 1.9E+02 0.0064 28.9 8.9 91 191-288 35-126 (334)
86 4e5s_A MCCFLIKE protein (BA_56 27.1 1.8E+02 0.0061 29.1 8.4 70 230-299 9-97 (331)
87 3sr3_A Microcin immunity prote 27.0 1.8E+02 0.0063 29.1 8.6 70 230-299 10-98 (336)
88 3tla_A MCCF; serine protease, 26.4 1.7E+02 0.006 29.8 8.3 70 230-299 40-128 (371)
89 2zbc_A 83AA long hypothetical 26.0 1.1E+02 0.0037 23.0 5.3 47 625-683 16-62 (83)
90 2cvi_A 75AA long hypothetical 25.9 88 0.003 23.8 4.7 48 624-683 15-62 (83)
91 1t90_A MMSDH, probable methylm 25.7 2E+02 0.0068 30.5 9.1 78 396-481 141-228 (486)
92 4e4g_A Methylmalonate-semialde 25.1 2E+02 0.0068 30.9 8.9 77 397-481 163-249 (521)
93 3ju8_A Succinylglutamic semial 21.8 2.5E+02 0.0085 29.8 8.8 77 396-480 139-225 (490)
94 3ri6_A O-acetylhomoserine sulf 21.5 3.5E+02 0.012 28.0 9.8 57 230-288 118-175 (430)
95 3etf_A Putative succinate-semi 21.1 3E+02 0.01 28.9 9.3 76 398-481 128-213 (462)
96 2o2p_A Formyltetrahydrofolate 20.8 2.4E+02 0.0083 30.2 8.5 47 398-444 180-231 (517)
97 1uxt_A Glyceraldehyde-3-phosph 20.7 2.6E+02 0.0091 29.7 8.8 49 396-444 157-210 (501)
98 3ros_A NAD-dependent aldehyde 20.4 3.6E+02 0.012 28.6 9.7 78 396-481 123-210 (484)
No 1
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=5e-92 Score=870.25 Aligned_cols=624 Identities=17% Similarity=0.169 Sum_probs=499.0
Q ss_pred hhHHHHHHHHHHHHHhh-ccCCChhhhhHHHHHhhhcCCCCCCCcchhhhhhhhcccccccC----CC-----CCccCCC
Q 004952 20 LEEAEEFDKILKQVISC-SKGLDAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIK----GP-----PLYWFPS 89 (722)
Q Consensus 20 ~~~~~~~~~~l~~~~~~-~~~~~hq~~Pfe~~lv~~l~p~~~~~~~~~~~~~~~~~~~~~~~----~~-----~~~~~~~ 89 (722)
.++..+|.++|+++++. ..+++||++||++ |++.++ ..++|+ +++++++... .. .....+.
T Consensus 308 ~~~~~s~~~ll~~v~~~~~~a~~hq~~p~~~-i~~~l~---~~~lf~-----~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 378 (1304)
T 2vsq_A 308 LSEGITFNGLLKRLQEQSLQSEPHQYVPLYD-IQSQAD---QPKLID-----HIIVFENYPLQDAKNEESSENGFDMVDV 378 (1304)
T ss_dssp CCTTCBHHHHHHHHHHHHHHHGGGTTSCHHH-HHHSSS---CSSSCC-----CEEEECSSCHHHHSCCCHHHHSEEEEEE
T ss_pred CCCCCcHHHHHHHHHHHHHHhhhcccCCHHH-HHHHhC---CCcccc-----eeEEEeecccccccccccccCCceeEee
Confidence 34566777777777777 6666999999999 999886 344544 4444443210 00 1101100
Q ss_pred -ccccccccHHHHHHHhCCcccccc-cCCCCCCHHHHHHHHhhCHHHHHHHHHhhcceeeecCCeee--ccCCCCCCCCC
Q 004952 90 -LDQSKLTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCI--LDRTDKSKHGG 165 (722)
Q Consensus 90 -~~~~~~~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~--l~~~~~~~~~~ 165 (722)
....++|||++.+.. ++++...+ |+. ++|++.+++++.++|.++|+++...++.+..++ ++..++...+.
T Consensus 379 ~~~~~~~~dL~l~~~~-~~~l~~~~~y~~-----~lf~~~~i~~l~~~~~~lL~~l~~~p~~~~~~~~~l~~~e~~~~~~ 452 (1304)
T 2vsq_A 379 HVFEKSNYDLNLMASP-GDEMLIKLAYNE-----NVFDEAFILRLKSQLLTAIQQLIQNPDQPVSTINLVDDREREFLLT 452 (1304)
T ss_dssp EECCCCCSSEEEEEEC-SSSCEEEEEEET-----TTSCHHHHHHHHHHHHHHHHHHHHSTTSBGGGCCCCCHHHHHHHHT
T ss_pred ecccccccCeEEEEec-CCcEEEEEEECC-----ccCCHHHHHHHHHHHHHHHHHhccCccccccccCCCCHHHHHHHHH
Confidence 013467787775532 45666777 888 999999999999999999999988787776653 33333333345
Q ss_pred CcCCCCccchhhhcccC--cccCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCC
Q 004952 166 TWLPGSVLNIAECCLLP--SNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPM 242 (722)
Q Consensus 166 ~w~~~~~~~~~~~~l~~--~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~ 242 (722)
.|+.+..... ..+++. ..+++++||++|+++.++ ++||+||+++++++|++|++. +++|++|+|+++|
T Consensus 453 ~~~~~~~~~~-~~~l~~~~~~~~~~~p~~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~ 523 (1304)
T 2vsq_A 453 GLNPPAQAHE-TKPLTYWFKEAVNANPDAPALTYSGQ--------TLSYRELDEEANRIARRLQKHGAGKGSVVALYTKR 523 (1304)
T ss_dssp TTSCCCCCCC-CCCHHHHHHHHHHHCTTSEEEESSSC--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCS
T ss_pred hcCCCCCCCC-CCCHHHHHHHHHHhCCCCeEEEECCe--------eEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCC
Confidence 6765543322 133332 345689999999998777 999999999999999999999 9999999999999
Q ss_pred CHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCC
Q 004952 243 TVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVG 322 (722)
Q Consensus 243 s~~~vv~~lA~~~aGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (722)
|+++++++|||+|+|++|||+||.+|.+|+.+++++++++++|++.........++ .....+.+..
T Consensus 524 s~~~vv~~lailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~--------~~~~~~~~~~------ 589 (1304)
T 2vsq_A 524 SLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELP--------YTGTTLFIDD------ 589 (1304)
T ss_dssp SHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTCC--------CCSEEEESSC------
T ss_pred CHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhccC--------CCCcEEEecc------
Confidence 99999999999999999999999999999999999999999999875431111111 0011111110
Q ss_pred CCCCCCCCCHHHHhcccCCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEE
Q 004952 323 IPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCW 402 (722)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~ 402 (722)
..... .. ...+.....++++|||+|||||||+||||+++|+++++. .+....++++++|++++
T Consensus 590 ---------~~~~~-~~------~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~ 652 (1304)
T 2vsq_A 590 ---------QTRFE-EQ------ASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLS 652 (1304)
T ss_dssp ---------GGGGG-SC------SSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEE
T ss_pred ---------ccccc-cc------cCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEE
Confidence 00000 00 011223456899999999999999999999999999877 55666788999999999
Q ss_pred ecCccccchhHHHHHHhhcCCEEEEecC--CCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeec
Q 004952 403 PTNLGWVMGPVILFSSFLNGATLALYQG--SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTG 480 (722)
Q Consensus 403 ~~~~~~~~~~~~~~~~L~~G~~lv~~~~--~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~G 480 (722)
+++++|+.+.+++|.+|++|+++++.+. ..++..+.+.|++++||+++++|++++.|.+.. ...+++||.+++||
T Consensus 653 ~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~---~~~~~~lr~~~~gG 729 (1304)
T 2vsq_A 653 VSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAG---EDWMKGLRCILFGG 729 (1304)
T ss_dssp CSCTTSTHHHHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC---SHHHHTCSEEEEES
T ss_pred ECCccHHHHHHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhc---hhcCCCccEEEEec
Confidence 9999999999999999999999999874 347889999999999999999999999998753 22368999999999
Q ss_pred CCCCcchHHHHHhhccCCcccccccccccccccccCCcC---CcCccccccccCCCceEEEECCCCCcCCCCCCccceEE
Q 004952 481 ETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL---QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVG 557 (722)
Q Consensus 481 e~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~---~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~ 557 (722)
|+++++..+.+.+.+++++++|.||+||++++++..... ......++|+|++|++++|+|++++++|.|++ |||+
T Consensus 730 e~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~G~~--GEl~ 807 (1304)
T 2vsq_A 730 ERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQPFGAV--GELC 807 (1304)
T ss_dssp SCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEEEEEECTTSCBCCTTCC--EEEE
T ss_pred CCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCccccCCCCCCceeeCCCEEEEECCCcCCCCCCCc--eEEE
Confidence 999999988888877778999999999999765543221 22345689999999999999999999999996 9999
Q ss_pred E-----ecccCCCccccccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHh
Q 004952 558 L-----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCD 632 (722)
Q Consensus 558 v-----~~~y~~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~ 632 (722)
| +.||++ +++.|+++|..+|+.+|.|||||||+|||++||+|+|+||+|||||++|+||+|+|||++|.
T Consensus 808 i~G~~v~~GY~~------~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~ 881 (1304)
T 2vsq_A 808 ISGMGVSKGYVN------RADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQ 881 (1304)
T ss_dssp EEETTCCCCBTT------CHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHH
T ss_pred EeccccCccccC------CcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHH
Confidence 8 356665 67799999999999889999999999999999999999999999999999999999999995
Q ss_pred ccCCCcceeEEEeecCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCC-CeeecCCCCCCCCchhhHHHHHHH
Q 004952 633 QADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNP-LFKVVPEFPRTASNKLLRRVLRDQ 711 (722)
Q Consensus 633 ~~~p~V~~~~vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p-~~~~v~~lP~t~~GKvdR~~L~~~ 711 (722)
+||+|.+|+|++.++..++ +.++|||+.+. ..+.++++++|+++||.||+| .++++++||+|+||||||++|++.
T Consensus 882 -~~p~V~~a~V~~~~~~~~~-~~l~a~vv~~~--~~~~~~l~~~l~~~Lp~ymvP~~~~~l~~lP~t~~GKidR~~L~~~ 957 (1304)
T 2vsq_A 882 -EYPGVKDAVVVADRHESGD-ASINAYLVNRT--QLSAEDVKAHLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLLPKP 957 (1304)
T ss_dssp -HSSSCCEEEEEEECCSSSC-CEEEEEEECSS--SSCHHHHHHHHHHHSCGGGSCSEEEEESCCCCCSSCSSCCSCCCCC
T ss_pred -hCCCCceEEEEEEecCCCC-EEEEEEEeCCC--CCCHHHHHHHHHHhChHhhhccEEEEecccCCCCCcccCHhhcCCc
Confidence 9999999999999887777 89999999865 466789999999999999999 466999999999999999999875
Q ss_pred Hh
Q 004952 712 IK 713 (722)
Q Consensus 712 ~~ 713 (722)
..
T Consensus 958 ~~ 959 (1304)
T 2vsq_A 958 DQ 959 (1304)
T ss_dssp CG
T ss_pred ch
Confidence 44
No 2
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=5.2e-86 Score=761.66 Aligned_cols=577 Identities=25% Similarity=0.372 Sum_probs=467.8
Q ss_pred CHHHHHHHHhhCHHHHHHHHHhhcceeeecCCeeeccCCCC-CCCCCCcCCCCccchhhhcccCcccCCCCCCceEEEEe
Q 004952 120 SFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDK-SKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWR 198 (722)
Q Consensus 120 ~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~-~~~~~~w~~~~~~~~~~~~l~~~~~a~~~pd~~Al~~~ 198 (722)
+|..+.++++++++.||..+++. +.|.+++.++++.... ..+..+||.++..|.+.+++++++ +++||++|+++.
T Consensus 23 ~y~~l~~~~~~~p~~~w~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~l~~~a--~~~pd~~Al~~~ 98 (652)
T 1pg4_A 23 QYETKYKQSINDPDTFWGEQGKI--LDWITPYQKVKNTSFAPGNVSIKWYEDGTLNLAANCLDRHL--QENGDRTAIIWE 98 (652)
T ss_dssp HHHHHHHHHHHCHHHHHHHHGGG--SCCSBCCSCCEEEECCTTCCEEEESTTCEECHHHHHTGGGH--HHHTTSEEEEEE
T ss_pred HHHHHHHHHhcCHHHHHHHHHhh--CceecCCcccccCccccCCCCCEECCCCChhHHHHHHHHHh--ccCCCceEEEEE
Confidence 46778899999999999999875 5788888888764321 133568999999999999988765 578999999985
Q ss_pred cCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHH
Q 004952 199 EDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLR 277 (722)
Q Consensus 199 ~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~p~~~~~~l~~~l~ 277 (722)
+. +.+..+++||+||+++++++|++|+++ |++||+|+|+++|++++++++|||+++|++++|++|.++.+++.++++
T Consensus 99 ~~--~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~Gav~vpl~~~~~~~~l~~~l~ 176 (652)
T 1pg4_A 99 GD--DTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCII 176 (652)
T ss_dssp CS--STTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHH
T ss_pred cC--CCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHH
Confidence 43 123346899999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred hcCceEEEeccchhcCCccccchHHHhh---cCC----CcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCCCCCCCCC
Q 004952 278 VSKAKGIFTQDFILRGGRKFPLYSKVLG---AAP----LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSP 350 (722)
Q Consensus 278 ~~~~~~il~~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (722)
++++++||+++...+.++.++....+.+ ..+ ..++++......... ......+|++++..... ..+.
T Consensus 177 ~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~ 250 (652)
T 1pg4_A 177 DSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDW-QEGRDLWWRDLIEKASP-----EHQP 250 (652)
T ss_dssp HHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCC-CBTTEEEHHHHHTTSCS-----CCCC
T ss_pred hcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcccc-cCCCceeHHHHHhhcCC-----CCCc
Confidence 9999999999877665555554433322 221 234444322111100 11234567777654322 1223
Q ss_pred ccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHH-HhhhhcCCCCCCEEEEecCccccchh-HHHHHHhhcCCEEEEe
Q 004952 351 VYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA-EGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLALY 428 (722)
Q Consensus 351 ~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~-~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~~G~~lv~~ 428 (722)
....+++++||+|||||||+||||+++|++++..+. .....++++++|++++.+|++|++++ +.++.+|++|++++++
T Consensus 251 ~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~ 330 (652)
T 1pg4_A 251 EAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMF 330 (652)
T ss_dssp CCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEE
T ss_pred cccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEE
Confidence 345679999999999999999999999999876654 44556899999999999999999998 7899999999999999
Q ss_pred cCC---CChhhHHHHHHHhCCcEEechhHHHHHHHhcCC--CCCCCccceeEEEeecCCCCcchHHHHHhhcc--CCccc
Q 004952 429 QGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAW--YNAII 501 (722)
Q Consensus 429 ~~~---~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~--~~~l~ 501 (722)
++. .++..+++.|++++||+++++|++++.|++... ....++++||.+++|||++++++.+++.+.++ .++++
T Consensus 331 ~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~ 410 (652)
T 1pg4_A 331 EGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVV 410 (652)
T ss_dssp CSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEE
T ss_pred CCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEE
Confidence 853 478899999999999999999999999998653 34567899999999999999999999988764 37899
Q ss_pred ccccccccccccccCCc-CCcCccccccccCCCceEEEECCCCCcCCCCCCccceEEEecccCCCccccc-cccccccce
Q 004952 502 ESCGGTELSSAYIQGSL-LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLL-NADHEEVYF 579 (722)
Q Consensus 502 n~YG~TE~~~~~~~~~~-~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~~~y~~~~~~~~-~~~~t~~~f 579 (722)
|.||+||++++++.... ..+...+++|+|++|++++|+|++|+++|.|+. |||+|...+.+...+|+ +++.+.+.|
T Consensus 411 ~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d~~g~~v~~g~~--GEl~i~g~~p~~~~gY~~~~e~~~~~~ 488 (652)
T 1pg4_A 411 DTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATE--GNLVITDSWPGQARTLFGDHERFEQTY 488 (652)
T ss_dssp EEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECTTCCBCCSSEE--EEEEECSCCTTCCCEETTCHHHHHHHH
T ss_pred ccccCcccccceecCCCCCcCccCCccccCcCCCeEEEECCCCCCcCCCce--EEEEEccCCCchhhhhcCCHHHHHhhh
Confidence 99999999976555433 234566899999999999999999999999984 99999542222222233 334443333
Q ss_pred eccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEEEEE
Q 004952 580 RGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIF 659 (722)
Q Consensus 580 ~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~a~ 659 (722)
.. ...+||+|||+|++|+||+|+|+||+|||||++|+||+|.|||++|. +||+|.+|+|++++++..| +.++||
T Consensus 489 ~~----~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~-~~p~V~ea~Vvg~~~~~~g-~~l~a~ 562 (652)
T 1pg4_A 489 FS----TFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALV-AHPKIAEAAVVGIPHAIKG-QAIYAY 562 (652)
T ss_dssp HS----SSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHH-HSTTEEEEEEEEEEETTTE-EEEEEE
T ss_pred hh----cCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHH-hCCCcceEEEEEEEcCCCC-eEEEEE
Confidence 21 11239999999999999999999999999999999999999999995 9999999999999998887 899999
Q ss_pred EEecCCCCCC---HHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhhhh
Q 004952 660 VVLKKGFTSQ---PDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKHEL 716 (722)
Q Consensus 660 vv~~~~~~~~---~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~~~ 716 (722)
|+++++...+ .++|+++|+++|+.||+|. ++++++||+|+||||+|++|++++.+++
T Consensus 563 Vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~~ 623 (652)
T 1pg4_A 563 VTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGDT 623 (652)
T ss_dssp EEECTTCCCCHHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHTC-
T ss_pred EEECCCCCCCHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCCccchHHHHHHHHhCCC
Confidence 9998875544 4789999999999999995 5599999999999999999999988753
No 3
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=1.2e-85 Score=759.03 Aligned_cols=583 Identities=24% Similarity=0.361 Sum_probs=466.6
Q ss_pred cCCCCCCHHHHHHHHhhCHHHHHHHHHhhcceeeecCCeeeccCC---C-CCCCCCCcCCCCccchhhhcccCcccCCCC
Q 004952 114 YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRT---D-KSKHGGTWLPGSVLNIAECCLLPSNHRRKE 189 (722)
Q Consensus 114 y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~l~~~---~-~~~~~~~w~~~~~~~~~~~~l~~~~~a~~~ 189 (722)
+...+.+|..++++++++++.||..+++.. +.|.+++.++++.. . ...+..+||.++.+|.+.+++++++ +++
T Consensus 19 ~~~~~~~y~~~~~~s~~~~~~fw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~l~~~a--~~~ 95 (663)
T 1ry2_A 19 SHMGLQDYQRLHKESIEDPAKFFGSKATQF-LNWSKPFDKVFIPDPKTGRPSFQNNAWFLNGQLNACYNCVDRHA--LKT 95 (663)
T ss_dssp -----CHHHHHHHHHHHCHHHHHHHHHHHH-CCEEECCSCSBCBCSSSCSBCSTTCCBSTTCEECHHHHHTHHHH--TTC
T ss_pred cCCChhhHHHHHHHHhcCHHHHHHHHHhhc-CeeecCCceeecCccccccCCCCCCCcCCCCCccHHHHHHHHHh--ccC
Confidence 444556788899999999999999998852 57999999988764 2 2233369999999999999998765 679
Q ss_pred CCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHH-hh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCCC
Q 004952 190 DNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALD-TM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSF 267 (722)
Q Consensus 190 pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~-~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~p~~ 267 (722)
||++|+++.+. +.+..+++||+||+++++++|++|+ +. |++||+|+|+++|++++++++|||+++|++++|++|.+
T Consensus 96 pd~~Al~~~~~--~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~~Gav~vpl~~~~ 173 (663)
T 1ry2_A 96 PNKKAIIFEGD--EPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGF 173 (663)
T ss_dssp TTSEEEEEECS--STTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTS
T ss_pred CCceEEEEEcC--CCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEeeCCCC
Confidence 99999998643 1233468999999999999999999 88 99999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhc---CC--CcEEEEcCCCC-CCCCCCCCCCCCHHHHhcccCC
Q 004952 268 AAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA---AP--LKAIVLPAIGN-DVGIPLREQDLSWKDFLSSVDY 341 (722)
Q Consensus 268 ~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 341 (722)
+.+++.++++++++++||+++...+.++.++....+.+. .+ ..++++..... .... ......+|.++......
T Consensus 174 ~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 252 (663)
T 1ry2_A 174 SSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAF-HAPRDLDWATEKKKYKT 252 (663)
T ss_dssp CHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCC-CSSSEEEHHHHHTTSCS
T ss_pred CHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCcccc-CCCccccHHHHHhhcCC
Confidence 999999999999999999998877666666554443332 22 23444433211 0000 11234567777654321
Q ss_pred CCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHH-HhhhhcCCCCCCEEEEecCccccchh-HHHHHHh
Q 004952 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA-EGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSF 419 (722)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~-~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L 419 (722)
..+.....+++++||+|||||||+||||+++|++++..+. .....++++++|++++.++++|+++. +.++.+|
T Consensus 253 -----~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L 327 (663)
T 1ry2_A 253 -----YYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPL 327 (663)
T ss_dssp -----CCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHH
T ss_pred -----CCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHhhhhHHHHHHHH
Confidence 1223345689999999999999999999999999876654 34456899999999999999999998 7889999
Q ss_pred hcCCEEEEecCC---CChhhHHHHHHHhCCcEEechhHHHHHHHhcCC--CCCCCccceeEEEeecCCCCcchHHHHHhh
Q 004952 420 LNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSK 494 (722)
Q Consensus 420 ~~G~~lv~~~~~---~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~ 494 (722)
++|++++++++. .++..+++.|++++||+++++|++++.|.+... ....++++||.+++|||++++++.+++.+.
T Consensus 328 ~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~ 407 (663)
T 1ry2_A 328 LYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEK 407 (663)
T ss_dssp HHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHHHHHT
T ss_pred HhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCCCCHHHHHHHHHH
Confidence 999999999753 477899999999999999999999999987654 345678999999999999999999999887
Q ss_pred cc--CCcccccccccccccccccCCc--CCcCccccccccCCCceEEEECC-CCCcCCC-CCCccceEEEecccCCCccc
Q 004952 495 AW--YNAIIESCGGTELSSAYIQGSL--LQPQAFGAFSTATMTAGLVILDE-CGVPYPD-DQPCVGEVGLFPLYLGASDR 568 (722)
Q Consensus 495 ~~--~~~l~n~YG~TE~~~~~~~~~~--~~~~~~~~iG~p~~~~~~~vld~-~~~~~p~-G~~giGel~v~~~y~~~~~~ 568 (722)
++ .++++|.||+||++++++.... ..+...+++|+|++|++++|+|+ +|+++|. |+. |||++...+.+...+
T Consensus 408 ~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~~--Gel~i~g~~p~~~~g 485 (663)
T 1ry2_A 408 IGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAE--GVLAVKAAWPSFART 485 (663)
T ss_dssp TSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCE--EEEEESSCCTTSCCE
T ss_pred hCCCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCcc--eEEEEecCCCchhcc
Confidence 64 3789999999999876555433 23456789999999999999998 9999998 874 999994321111122
Q ss_pred cc-cccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeec
Q 004952 569 LL-NADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVS 647 (722)
Q Consensus 569 ~~-~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~ 647 (722)
|+ +++.+.+.|... .+| ||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|. +||+|.+|+|++.+
T Consensus 486 y~~~~~~~~~~~~~~--~~g--~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~-~~p~V~ea~Vvg~~ 560 (663)
T 1ry2_A 486 IWKNHDRYLDTYLNP--YPG--YYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAII-EDPIVAECAVVGFN 560 (663)
T ss_dssp ETTCHHHHHHHHTSS--STT--SEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHH-SSTTEEEEEEECCC
T ss_pred cccChHHHHHhhhcC--CCC--EEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHH-hCCCcceEEEEEEe
Confidence 33 444444433211 123 9999999999999999999999999999999999999999995 99999999999999
Q ss_pred CCCCCceEEEEEEEecCCCC---C-C------HHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhhh
Q 004952 648 PAGGGPEVLVIFVVLKKGFT---S-Q------PDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKHE 715 (722)
Q Consensus 648 ~~~~g~~~l~a~vv~~~~~~---~-~------~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~~ 715 (722)
++..| +.++|||+++++.. . + .++|+++|+++|+.||+|. ++++++||+|+||||+|++|++++.++
T Consensus 561 ~~~~g-~~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~ 638 (663)
T 1ry2_A 561 DDLTG-QAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGE 638 (663)
T ss_dssp CCTTS-CCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC--
T ss_pred cCCCC-eEEEEEEEEcCCCccccccchhHHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCccCchHHHHHHHHcCC
Confidence 98777 89999999987643 2 2 4789999999999999995 559999999999999999999988765
No 4
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=5.1e-81 Score=707.70 Aligned_cols=502 Identities=18% Similarity=0.172 Sum_probs=381.1
Q ss_pred cCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 004952 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (722)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl 263 (722)
+++++||++|+++.+.....+..+++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 28 ~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl 107 (549)
T 3g7s_A 28 AAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVPI 107 (549)
T ss_dssp HHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEEEcc
Confidence 347899999999987432233345999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCC
Q 004952 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (722)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (722)
+|.++.+++.+++++++++++|+++... +.............+++.. ....++.++......
T Consensus 108 ~~~~~~~~l~~il~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~-- 169 (549)
T 3g7s_A 108 NPMYKSFELEHILNDSEATTLVVHSMLY------ENFKPVLEKTGVERVFVVG----------GEVNSLSEVMDSGSE-- 169 (549)
T ss_dssp CTTCCHHHHHHHHHHTTCSEEEEEGGGH------HHHHHHHTTSCCCEEEEET----------CSSSCHHHHHHHSCS--
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEChHHH------HHHHHHHhhCCCcEEEEeC----------CCCcCHHHHHhcCcc--
Confidence 9999999999999999999999997542 2223333333332222221 123456666654432
Q ss_pred CCCCCCCccCC-CCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcC
Q 004952 344 RPNYYSPVYNP-VDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNG 422 (722)
Q Consensus 344 ~~~~~~~~~~~-~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G 422 (722)
........ ++++|||+|||||||.||||+++|+++++.+.+....+++.++|++++..|++|+.++..++.++..|
T Consensus 170 ---~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G 246 (549)
T 3g7s_A 170 ---DFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGLVNLMVTVG 246 (549)
T ss_dssp ---CCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHHHHTTHHHHC
T ss_pred ---ccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHHHHHHHHhcC
Confidence 11122223 48999999999999999999999999999998888889999999999999999999987788999999
Q ss_pred CEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCC--CCCccceeEEEeecCCCCcchHHHHHhh----cc
Q 004952 423 ATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLE--GLDWTKIRSFASTGETSNVDDDLWLSSK----AW 496 (722)
Q Consensus 423 ~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~--~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~----~~ 496 (722)
+++++.+ ..++..+++.|+++++|+++++|++++.|++..... ..++++||.+++|||++++++.+++.+. ++
T Consensus 247 ~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~ 325 (549)
T 3g7s_A 247 NEYVVMG-MFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCN 325 (549)
T ss_dssp CEEEEES-SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSS
T ss_pred ceEEEcC-CCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCccCCHHHHHHHHHHHHhhcC
Confidence 9999987 568899999999999999999999999998764332 2578999999999999999998888776 32
Q ss_pred --CCcccccccccccccccccCCcCCcCccccccccCCCceEEEEC-CCCCcCCCCCCccceEEEe-----cccCCCccc
Q 004952 497 --YNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGLF-----PLYLGASDR 568 (722)
Q Consensus 497 --~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~~p~G~~giGel~v~-----~~y~~~~~~ 568 (722)
.++++|.||+||++++++...........++|+|+++++++|+| ++|+++|.|+. |||+|. .||++
T Consensus 326 ~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~--GEl~v~g~~v~~GY~~---- 399 (549)
T 3g7s_A 326 NPRLRHNQIWGMTEACPMVTTNPPLRLDKSTTQGVPMSDIELKVISLEDGRELGVGES--GEIVIRGPNIFKGYWK---- 399 (549)
T ss_dssp CTTCEEEEEEECGGGSSEEEECCGGGGGGTTSCCEECTTCEEEEECSSSCCEECTTCC--EEEEEESTTSCSEETT----
T ss_pred CccccccceEeccccchhhhcCCccccCcCCCccccCCCCEEEEEeCCCCcCCCCCCc--eEEEEECcchhhhhCC----
Confidence 37899999999999876666555545678999999999999999 89999999996 999993 45555
Q ss_pred cccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecC
Q 004952 569 LLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSP 648 (722)
Q Consensus 569 ~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~ 648 (722)
+++.|++.|..++ +|.|||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|. +||+|.+|+|++.++
T Consensus 400 --~~~~t~~~f~~~~--~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~Vv~~~~ 474 (549)
T 3g7s_A 400 --REKENQECWWYDE--KGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLM-KHEAVMDVAVIGKPD 474 (549)
T ss_dssp --CTTGGGTSEEECT--TCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHT-TSTTEEEEEEECCCC
T ss_pred --ChhhhhhhhhccC--CCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHH-hCCCeeeEEEEeeEc
Confidence 6678888886443 47789999999999999999999999999999999999999999995 999999999999999
Q ss_pred CCCCceEEEEEEEecCC--CCCCHHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhhhhhhcc
Q 004952 649 AGGGPEVLVIFVVLKKG--FTSQPDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKHELSVRS 720 (722)
Q Consensus 649 ~~~g~~~l~a~vv~~~~--~~~~~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~~~~~~~ 720 (722)
+..| +.++|||+++++ ...+.++|+++|+++||.||+|. ++++++||+|+||||||++|++...++..+++
T Consensus 475 ~~~g-~~~~a~vv~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~~~~~ 548 (549)
T 3g7s_A 475 EEAG-EVPKAFIVLKPEYRGKVDEEDIIEWVRERISGYKRVREVEFVEELPRTASGKLLRRLLREKEAEGHHHHH 548 (549)
T ss_dssp -------CEEEEEECSTTTTSCCHHHHHHHHHTTCC-----CCCCEEEECC------------------------
T ss_pred cccC-ceEEEEEEECCCccCcCCHHHHHHHHHHhccCcccceEEEEeccCCCCCCcCEeHHHHHHHhhccccccC
Confidence 8887 899999999876 45778999999999999999995 56999999999999999999999887765543
No 5
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=4.3e-81 Score=714.84 Aligned_cols=465 Identities=18% Similarity=0.170 Sum_probs=386.9
Q ss_pred cCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 004952 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (722)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl 263 (722)
+++++||++|+++.++ ++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+|+|++|||+
T Consensus 36 ~a~~~Pd~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailkaGa~~vpl 107 (620)
T 4dg8_A 36 MAALHPHREAIRDRFG--------SVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSGHHYLYI 107 (620)
T ss_dssp HHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHhCCCCeEEEcCCC--------cCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEee
Confidence 4578999999999887 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCC
Q 004952 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (722)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (722)
||.+|.+++.+++++++++++++++......... .... +... ..
T Consensus 108 d~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~------------~~~~------------------~~~~----~~-- 151 (620)
T 4dg8_A 108 DLKQPAAWNAELCRQVDCRLILDCSTTPTPANGL------------PCVP------------------VRHL----PA-- 151 (620)
T ss_dssp CTTSCHHHHHHHHHHHTEEEEEECCSSCCCCTTS------------CEEE------------------GGGC----CC--
T ss_pred CccChHHHHHHHHHhCCCcEEEecCcccccccCC------------ceee------------------eccC----Cc--
Confidence 9999999999999999999999765321100000 0000 0000 00
Q ss_pred CCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcCC
Q 004952 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGA 423 (722)
Q Consensus 344 ~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~ 423 (722)
...........++++|||+|||||||+||||+++|+++.+.+.+ ...+++.+++++++.+|++|+.+++++|.+|++|+
T Consensus 152 ~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~ 230 (620)
T 4dg8_A 152 APASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGG 230 (620)
T ss_dssp CCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTC
T ss_pred CCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCC
Confidence 01111223346799999999999999999999999999887765 56788999999999999999999999999999999
Q ss_pred EEEEecC-CCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCcccc
Q 004952 424 TLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE 502 (722)
Q Consensus 424 ~lv~~~~-~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n 502 (722)
++++.+. ..++..+.++|+++++|+++++|++++.|.+.. ..++++||.+++|||+++++..+++...+++++++|
T Consensus 231 ~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~---~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n 307 (620)
T 4dg8_A 231 CCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLD---PDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVN 307 (620)
T ss_dssp EEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC---GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEE
T ss_pred EEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcC---hhhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEe
Confidence 9999753 457889999999999999999999999998753 345789999999999999988888877778899999
Q ss_pred cccccccccccccCCc---CCcCccccccccCCCceEEEECCCCCc-CCCCCCccceEEE-----ecccCCCcccccccc
Q 004952 503 SCGGTELSSAYIQGSL---LQPQAFGAFSTATMTAGLVILDECGVP-YPDDQPCVGEVGL-----FPLYLGASDRLLNAD 573 (722)
Q Consensus 503 ~YG~TE~~~~~~~~~~---~~~~~~~~iG~p~~~~~~~vld~~~~~-~p~G~~giGel~v-----~~~y~~~~~~~~~~~ 573 (722)
.||+||++++++.... .......++|+|++|++++|+|+++++ +|.|++ |||+| +.||++ +++
T Consensus 308 ~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~~g~~--GEl~i~G~~v~~GY~~------~p~ 379 (620)
T 4dg8_A 308 GYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRA--GEIVAFGAGLAQGYRN------DAA 379 (620)
T ss_dssp EECCGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEECTTSCBCCSSSCC--EEEEEEETTCCSEETT------CHH
T ss_pred eEchhhhhhheEEEeccccccCCCCCCceecccCcEEEEECccCCCCCCCCCc--eEEEEeccccccccCC------Chh
Confidence 9999999876543222 223445789999999999999999988 789985 99998 355655 677
Q ss_pred ccccceeccccCCCc--eecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCC
Q 004952 574 HEEVYFRGMPMYKGM--CLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGG 651 (722)
Q Consensus 574 ~t~~~f~~~p~~~g~--r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~ 651 (722)
.|+++|..+|+ +|. +||||||+|++++||+|+|+||+|||||++|+||+|+|||++|. +||+|.+|+|++.+++..
T Consensus 380 ~t~~~f~~~p~-~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~-~~p~V~~a~Vv~~~~~~~ 457 (620)
T 4dg8_A 380 RTRASFVELPY-RGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFR-RQPGILDCALLVRERNGV 457 (620)
T ss_dssp HHHHHEEEEEE-TTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHH-TSTTEEEEEEEEEEETTE
T ss_pred hhhhhhccCCC-CCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHH-hCCCccEEEEEEEeCCCc
Confidence 89999998884 344 89999999999999999999999999999999999999999995 999999999999987743
Q ss_pred CceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhhh
Q 004952 652 GPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKHE 715 (722)
Q Consensus 652 g~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~~ 715 (722)
..++++++... ++++++|+++||.||+|. ++++++||+|+||||||++|++.+.+.
T Consensus 458 --~~lv~~~~~~~------~~~~~~l~~~Lp~y~~P~~~~~v~~lP~t~~GKidR~~L~~~~~~~ 514 (620)
T 4dg8_A 458 --KQLLCAWTGKA------DASPQALLRQLPTWQRPHACVRVEALPLTAHGKLDRAALLRRLEEP 514 (620)
T ss_dssp --EEEEEEEEECT------TCCCHHHHHHSCGGGSCSEEEECSSCCCC----CCHHHHHHHTCSC
T ss_pred --eEEEEEEecCh------HHHHHHHHHhChhhcCCcEEEEECcCCCCcccCHhHHHHhhccccc
Confidence 45666666432 234567788999999995 569999999999999999999887554
No 6
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=2.9e-80 Score=704.11 Aligned_cols=517 Identities=18% Similarity=0.199 Sum_probs=406.0
Q ss_pred CCcCCCCccchhhhcccCcccCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCC
Q 004952 165 GTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMT 243 (722)
Q Consensus 165 ~~w~~~~~~~~~~~~l~~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s 243 (722)
..|.....+|...+++++++ +++||++|+++.+.. +..+++||+||+++++++|++|++. +++||+|+|+++|+
T Consensus 47 ~~~~~~~~~n~~~~~l~~~a--~~~pd~~Al~~~~~~---g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~ 121 (580)
T 3etc_A 47 FKILVPENFNFAYDVVDVYA--RDSPEKLAMIWCDDY---GNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSR 121 (580)
T ss_dssp CCBCCCSSCCHHHHTHHHHH--HHCTTCEEEEEEESS---SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTC
T ss_pred CCCCCcccchHHHHHHHHHH--hhCCCCEEEEEEcCC---CCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCC
Confidence 45777777888877777755 689999999986531 3346899999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCC---CcEEEEcCCCCC
Q 004952 244 VRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP---LKAIVLPAIGND 320 (722)
Q Consensus 244 ~~~vv~~lA~~~aGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 320 (722)
+++++++|||+|+|++++|++|.++.+++.+++++++++++|++.+.. ..+.........+ ...+.+...
T Consensus 122 ~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~--- 194 (580)
T 3etc_A 122 YDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDD----VPEQVDEAHAECGDIPLKKAKVGGD--- 194 (580)
T ss_dssp THHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTT----HHHHHHHHHHHHCSCCCEEEEESSS---
T ss_pred HHHHHHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchh----HHHHHHHHhhhCCCcceEEEEeCCc---
Confidence 999999999999999999999999999999999999999999987421 0012222222222 233333211
Q ss_pred CCCCCCCCCCCHHHHhcccCCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEE
Q 004952 321 VGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVY 400 (722)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~ 400 (722)
...+..++.+.+....... ..........++|++||+|||||||.||||+++|.+++..+......+++.+++++
T Consensus 195 ----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (580)
T 3etc_A 195 ----VLEGWIDFRKELEESSPIF-ERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLH 269 (580)
T ss_dssp ----CCTTCEEHHHHHHHSCSCC-CCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEE
T ss_pred ----cccccccHHHHHhhCCccc-ccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceE
Confidence 1123455666655443210 00111134578999999999999999999999999998887776667889999999
Q ss_pred EEecCccccchhHH-HHHHhhcCCEEEEec-CCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEe
Q 004952 401 CWPTNLGWVMGPVI-LFSSFLNGATLALYQ-GSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAS 478 (722)
Q Consensus 401 l~~~~~~~~~~~~~-~~~~L~~G~~lv~~~-~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~ 478 (722)
++.++++|+.+.+. ++.++..|+++++.+ ...++..+++.|+++++|+++++|++++.|.+.. ....++++||.+++
T Consensus 270 ~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~-~~~~~l~~lr~i~~ 348 (580)
T 3etc_A 270 YTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED-LSHYNFSTLKYAVV 348 (580)
T ss_dssp EECCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC-C---CCTTCCEEEE
T ss_pred EEeCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc-cccCCCccceEEEE
Confidence 99999999999865 788999999999985 4568889999999999999999999999998863 35567899999999
Q ss_pred ecCCCCcchHHHHHhhccCCcccccccccccccccccCCcCCcCccccccccCCCceEEEECCCCCcCCCCCCccceEEE
Q 004952 479 TGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL 558 (722)
Q Consensus 479 ~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v 558 (722)
|||++++++.+++.+.+ +++++|.||+||+++.++... ......+++|+|++|++++|+|++|+++|.|+. |||+|
T Consensus 349 gGe~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~-~~~~~~~~~G~p~~~~~v~ivd~~g~~~~~g~~--GEl~v 424 (580)
T 3etc_A 349 AGEPLNPEVFNRFLEFT-GIKLMEGFGQTETVVTIATFP-WMEPKPGSIGKPTPGYKIELMDRDGRLCEVGEE--GEIVI 424 (580)
T ss_dssp CSSCCCHHHHHHHHHHH-SCCCEEEECCTTSSCCEECCT-TSCCCTTCCBEECTTCEEEEECTTSCBCCTTCC--EEEEE
T ss_pred ccCCCCHHHHHHHHHHh-CCeEecccccccccceeecCC-CCCCCCCccccCCCCCEEEEECCCCCCCCCCCc--eEEEE
Confidence 99999999999888765 689999999999987554433 334567899999999999999999999999996 99999
Q ss_pred e------cccCCCccccccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHh
Q 004952 559 F------PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCD 632 (722)
Q Consensus 559 ~------~~y~~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~ 632 (722)
. ++.+. .|+.+++.|++.|.. +||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|.
T Consensus 425 ~~~~g~~~~~~~--gY~~~p~~t~~~f~~-------gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~ 495 (580)
T 3etc_A 425 NTMEGKPVGLFV--HYGKDPERTEETWHD-------GYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALI 495 (580)
T ss_dssp ECTTCCCTTCCC--EETTCHHHHHHHEET-------TEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHT
T ss_pred ecCCCCCCeeec--cccCCHhHHHhhcCC-------CEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHH
Confidence 5 22222 233466788888852 39999999999999999999999999999999999999999995
Q ss_pred ccCCCcceeEEEeecCCCCCceEEEEEEEecCCCCCC---HHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHH
Q 004952 633 QADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQ---PDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVL 708 (722)
Q Consensus 633 ~~~p~V~~~~vv~~~~~~~g~~~l~a~vv~~~~~~~~---~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L 708 (722)
+||+|.+|+|++.+++..| +.++|+|++.++...+ .++|+++++++||.||+|+ ++++++||+|+||||+|++|
T Consensus 496 -~~p~V~~a~Vvg~~~~~~g-~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~sGKi~R~~L 573 (580)
T 3etc_A 496 -QHPAVLECAITGVPDPVRG-QVIKATIVLTKDYTPSDSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEI 573 (580)
T ss_dssp -TSTTEEEEEEEEEEETTTE-EEEEEEEEECTTCCCCHHHHHHHHHHHHHHSCGGGCCSEEEEECC--------------
T ss_pred -hCCCeeeEEEEeeeccCCC-cEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCCccCCeEEEEeCCCCCCCCcCCcHHHH
Confidence 9999999999999999888 8999999998875544 3689999999999999996 55899999999999999999
Q ss_pred HHHHhh
Q 004952 709 RDQIKH 714 (722)
Q Consensus 709 ~~~~~~ 714 (722)
++++++
T Consensus 574 r~~~~~ 579 (580)
T 3etc_A 574 RDKDQS 579 (580)
T ss_dssp ------
T ss_pred HhHhhc
Confidence 998765
No 7
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=2.4e-80 Score=700.09 Aligned_cols=488 Identities=20% Similarity=0.245 Sum_probs=411.0
Q ss_pred cCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 004952 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (722)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl 263 (722)
+++++||++|+++.+.+ +++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 31 ~a~~~p~~~a~~~~~~~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~~Gav~vpl 104 (536)
T 3ni2_A 31 NLSNHSSKPCLINGANG------DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAA 104 (536)
T ss_dssp TGGGSTTSEEEEETTTC------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEEC
T ss_pred HhhcCCCceEEEECCCC------CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCEEecc
Confidence 34789999999986321 2899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCC
Q 004952 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (722)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (722)
+|.++.+++.+++++++++++|++.... +.............+.+... ..+...+.++......
T Consensus 105 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~-- 168 (536)
T 3ni2_A 105 NPFSTPAELAKHAKASRAKLLITQACYY------EKVKDFARESDVKVMCVDSA--------PDGCLHFSELTQADEN-- 168 (536)
T ss_dssp CTTCCHHHHHHHHHHHTEEEEEECGGGT------HHHHHHHHHHTCEEEESSCC--------CTTCEETHHHHTSCGG--
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEChHHH------HHHHHHHhhcCceEEEecCC--------CCCccCHHHHhhcccc--
Confidence 9999999999999999999999987542 22222222222233333211 1233445565543321
Q ss_pred CCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhh----hcCCCCCCEEEEecCccccchh-HHHHHH
Q 004952 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA----HIDLKVGDVYCWPTNLGWVMGP-VILFSS 418 (722)
Q Consensus 344 ~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~----~~~~~~~d~~l~~~~~~~~~~~-~~~~~~ 418 (722)
..+.....+++++||+|||||||.||||+++|+++++.+.+... .+++.++|++++..|++|++++ ..++.+
T Consensus 169 ---~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~ 245 (536)
T 3ni2_A 169 ---EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCG 245 (536)
T ss_dssp ---GCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHH
T ss_pred ---ccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHHH
Confidence 12233457899999999999999999999999999887765433 4568899999999999999998 557889
Q ss_pred hhcCCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCC
Q 004952 419 FLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN 498 (722)
Q Consensus 419 L~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~ 498 (722)
|..|+++++.+ ..++..+++.|+++++|++.++|+++..|.+.......++++||.+++|||++++++.+++.+.++++
T Consensus 246 l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~ 324 (536)
T 3ni2_A 246 LRVGAPILIMP-KFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQA 324 (536)
T ss_dssp HHHTCCEEECS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSCCCHHHHHHHHHHCTTS
T ss_pred HhcCCEEEEcC-CCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCCCCCHHHHHHHHHHCCCC
Confidence 99999999987 46788999999999999999999999999988766677899999999999999999999999988889
Q ss_pred cccccccccccccccccCC----cCCcCccccccccCCCceEEEEC-CCCCcCCCCCCccceEEEe-----cccCCCccc
Q 004952 499 AIIESCGGTELSSAYIQGS----LLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGLF-----PLYLGASDR 568 (722)
Q Consensus 499 ~l~n~YG~TE~~~~~~~~~----~~~~~~~~~iG~p~~~~~~~vld-~~~~~~p~G~~giGel~v~-----~~y~~~~~~ 568 (722)
+++|.||+||++.+++... .......+++|+|+++++++|+| ++|+++|.|++ |||+|. .||++
T Consensus 325 ~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~--GEl~v~g~~v~~GY~~---- 398 (536)
T 3ni2_A 325 RLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQP--GEICIRGDQIMKGYLN---- 398 (536)
T ss_dssp EEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCC--EEEEEESTTSCSEETT----
T ss_pred CccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCc--cEEEEeCcccchhhcC----
Confidence 9999999999986544332 12234567899999999999999 67999999996 999993 45555
Q ss_pred cccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecC
Q 004952 569 LLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSP 648 (722)
Q Consensus 569 ~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~ 648 (722)
+++.|++.|.. .+||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|. +||+|.+|+|+++++
T Consensus 399 --~p~~t~~~~~~------~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~Vv~~~~ 469 (536)
T 3ni2_A 399 --DPEATSRTIDK------EGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLI-AHPEISDAAVVGLKD 469 (536)
T ss_dssp --CHHHHHHHBCT------TSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHH-TSTTEEEEEEEEEEE
T ss_pred --ChhHHHhhccC------CCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHH-hCCCcceEEEEeeec
Confidence 56678877753 349999999999999999999999999999999999999999995 999999999999999
Q ss_pred CCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhh
Q 004952 649 AGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKH 714 (722)
Q Consensus 649 ~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~ 714 (722)
+..| +.++|||+..++...+.++|+++|+++||.||+|. ++++++||+|+||||||++|++++++
T Consensus 470 ~~~g-~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 535 (536)
T 3ni2_A 470 EDAG-EVPVAFVVKSEKSQATEDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKLAG 535 (536)
T ss_dssp TTTE-EEEEEEEEECTTCCCCHHHHHHHHHTTSCGGGCCSEEEECSCCCBCTTSCBCHHHHHTC---
T ss_pred CCCC-ceeEEEEEecCCCCCCHHHHHHHHHHhccCCccccEEEEEecCCCCCCCCeeHHHHHHHhcc
Confidence 8887 89999999988877888999999999999999995 66999999999999999999987753
No 8
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=1.6e-79 Score=687.45 Aligned_cols=484 Identities=21% Similarity=0.209 Sum_probs=405.5
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 004952 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (722)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~ 264 (722)
++++||++|+...... .+++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++|++
T Consensus 10 a~~~p~~~a~~~~~~~-----~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~ 84 (503)
T 4fuq_A 10 FDKLDDPHKLAIETAA-----GDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLN 84 (503)
T ss_dssp HSCCSCTTSEEEEETT-----CCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEECC
T ss_pred HHhCCCCceEEEecCC-----CcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEecC
Confidence 3678888888753221 02899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCCC
Q 004952 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (722)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (722)
|.++.+++.+++++++++++|++.... +....+.......+..+... ....+.+......
T Consensus 85 ~~~~~~~l~~il~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~---- 144 (503)
T 4fuq_A 85 TAYTLHELDYFITDAEPKIVVCDPSKR------DGIAAIAAKVGATVETLGPD----------GRGSLTDAAAGAS---- 144 (503)
T ss_dssp TTCCHHHHHHHHHHHCCSEEEECGGGT------TTTHHHHHHHTCEEEECCTT----------SCSHHHHHHHTSC----
T ss_pred CCCCHHHHHHHHHhcCCcEEEECchhh------HHHHHHHhhcCceEEEecCC----------cccccchhhhcCC----
Confidence 999999999999999999999997543 22222222222222222111 1112222222111
Q ss_pred CCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchh-HHHHHHhhcCC
Q 004952 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGA 423 (722)
Q Consensus 345 ~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~~G~ 423 (722)
.........+++++||+|||||||.||||+++|+++.+.+.+....++++++|++++..|++|+.++ ..++.+++.|+
T Consensus 145 -~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~ 223 (503)
T 4fuq_A 145 -EAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARG 223 (503)
T ss_dssp -SCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTC
T ss_pred -CCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCC
Confidence 1122335568999999999999999999999999999999888888999999999999999999997 44778999999
Q ss_pred EEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCccccc
Q 004952 424 TLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 503 (722)
Q Consensus 424 ~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n~ 503 (722)
++++.+ ..++..+++.++ ++|++.++|+++..|++.......++++||.+++|||++++++.+++...+ +++++|.
T Consensus 224 ~~~~~~-~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~-~~~~~~~ 299 (503)
T 4fuq_A 224 SMIFLP-KFDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKT-GHAVLER 299 (503)
T ss_dssp EEEECS-SCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCSTTTTTTCCEEEECSSCCCHHHHHHHHHHH-SCCEEEC
T ss_pred EEEEcC-CCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCccccchhhcEEEEECCCCCCHHHHHHHHHHh-CCCccce
Confidence 999987 568888999987 899999999999999988766667789999999999999999998888765 5789999
Q ss_pred ccccccccccccCCcCCcCccccccccCCCceEEEEC-CCCCcCCCCCCccceEEEe-----cccCCCcccccccccccc
Q 004952 504 CGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGLF-----PLYLGASDRLLNADHEEV 577 (722)
Q Consensus 504 YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~~p~G~~giGel~v~-----~~y~~~~~~~~~~~~t~~ 577 (722)
||+||+++.++ .........+++|+|+++++++|+| ++|+++|.|+. |||+|. .||++ +++.|++
T Consensus 300 YG~TE~~~~~~-~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~--GEl~v~g~~v~~GY~~------~~~~t~~ 370 (503)
T 4fuq_A 300 YGMTETNMNTS-NPYDGDRVPGAVGPALPGVSARVTDPETGKELPRGDI--GMIEVKGPNVFKGYWR------MPEKTKS 370 (503)
T ss_dssp CEETTTEECBC-CCSSSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCC--EEEEEESTTSCCCBTT------CHHHHHH
T ss_pred EcccccCcccc-cCCCCCCcCCccccCCCCeEEEEEECCCCCCCcCCCc--eEEEEECCchhhhhcC------ChhhhHh
Confidence 99999987543 3333445567899999999999999 88999999995 999993 45555 6678888
Q ss_pred ceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEEE
Q 004952 578 YFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLV 657 (722)
Q Consensus 578 ~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~ 657 (722)
.|..+ +||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|. +||+|.+|+|++++++..+ +.++
T Consensus 371 ~f~~~------g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~~-~~~~ 442 (503)
T 4fuq_A 371 EFRDD------GFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEID-AMPGVVESAVIGVPHADFG-EGVT 442 (503)
T ss_dssp TBCTT------SCEEEEEEEEECTTCEEEECCSSTTCEEETTEEECHHHHHHHHH-TSTTEEEEEEEEEEETTTE-EEEE
T ss_pred hhCCC------CCeEcceeEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHH-hCCCeeEEEEEEeEchhcC-ceeE
Confidence 88643 39999999999999999999999999999999999999999995 9999999999999998887 8999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhhhh
Q 004952 658 IFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKHEL 716 (722)
Q Consensus 658 a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~~~ 716 (722)
++|+.+++...+.++++++|+++||.||+|. ++++++||+|+||||||++|++++++..
T Consensus 443 a~v~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~ 502 (503)
T 4fuq_A 443 AVVVRDKGATIDEAQVLHGLDGQLAKFKMPKKVIFVDDLPRNTMGKVQKNVLRETYKDIY 502 (503)
T ss_dssp EEEEECTTCCCCHHHHHHHHBTTBCGGGCCSEEEEESCCCBCTTSCBCHHHHHHHTTTTT
T ss_pred EEEEeCCCCCCCHHHHHHHHHhhcccCCCCCEEEEECCCCCCcccceeHHHHHHHHHHhh
Confidence 9999998888888999999999999999995 5599999999999999999999987654
No 9
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=1.4e-79 Score=693.88 Aligned_cols=489 Identities=19% Similarity=0.213 Sum_probs=405.4
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 004952 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (722)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~ 264 (722)
++++||++|+++.+. ++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|++
T Consensus 35 a~~~p~~~A~~~~~~--------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~ 106 (539)
T 1mdb_A 35 AAKYGDRIAITCGNT--------HWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFAL 106 (539)
T ss_dssp HHHHTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEEECC
T ss_pred HHHCCCCEEEEeCCC--------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeEEecCC
Confidence 468899999998776 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCC-cEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCC
Q 004952 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (722)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (722)
|.++.+++.+++++++++++|+++.... ....+....+....+. ..+++.... ..+.++......
T Consensus 107 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~-- 172 (539)
T 1mdb_A 107 PSHRSSEITYFCEFAEAAAYIIPDAYSG-FDYRSLARQVQSKLPTLKNIIVAGEA-----------EEFLPLEDLHTE-- 172 (539)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEESEETT-EEHHHHHHHHHHHCTTCCCEEEESCC-----------TTSEEGGGCCCC--
T ss_pred CCCCHHHHHHHHHhCCCCEEEecccccc-ccHHHHHHHHHhcCCCccEEEEcCCc-----------cchhhhhhcccc--
Confidence 9999999999999999999999874310 0000112222222222 112221110 012222211111
Q ss_pred CCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchhH--HHHHHhhc
Q 004952 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV--ILFSSFLN 421 (722)
Q Consensus 344 ~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~--~~~~~L~~ 421 (722)
........+++++||+|||||||.||||+++|+++++.+.+....++++++|++++.+|++|++++. .++.+|+.
T Consensus 173 ---~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~ 249 (539)
T 1mdb_A 173 ---PVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYA 249 (539)
T ss_dssp ---CCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHT
T ss_pred ---ccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchhhHHHHHHHHHh
Confidence 1112345679999999999999999999999999999988888888999999999999999999885 58999999
Q ss_pred CCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCccc
Q 004952 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (722)
Q Consensus 422 G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~ 501 (722)
|+++++.+ ..++..+++.|+++++|++.++|+++..|++.......++++||.+++|||++++++.+++.+.+ +++++
T Consensus 250 G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~ 327 (539)
T 1mdb_A 250 GGRVVLSP-SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVF-GCTLQ 327 (539)
T ss_dssp TCEEEECS-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHT-CSEEE
T ss_pred CCEEEECC-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCCHHHHHHHHHHh-CCcEE
Confidence 99999987 46788999999999999999999999999876544556789999999999999999988888766 68999
Q ss_pred ccccccccccccccCCcCCcCccccccccCCCc-eEEEECCCCCcCCCCCCccceEEEe-----cccCCCcccccccccc
Q 004952 502 ESCGGTELSSAYIQGSLLQPQAFGAFSTATMTA-GLVILDECGVPYPDDQPCVGEVGLF-----PLYLGASDRLLNADHE 575 (722)
Q Consensus 502 n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~-~~~vld~~~~~~p~G~~giGel~v~-----~~y~~~~~~~~~~~~t 575 (722)
|.||+||+++.+...........+++|+|+++. +++|+|++|+++|.|+. |||+|. .||++ +++.|
T Consensus 328 ~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~--GEl~v~g~~v~~GY~~------~~~~t 399 (539)
T 1mdb_A 328 QVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGET--GHLLTRGPYTIRGYYK------AEEHN 399 (539)
T ss_dssp EEEECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEECTTSCBCCTTCC--EEEEEECTTSCSSCTT------CHHHH
T ss_pred EEEcCCCCcccccCCCCcHHhcCCCCCcccCCCceEEEECCCCCCCcCCCc--ceEEeeCcccchhhcC------Chhhh
Confidence 999999976543322211123456899999764 79999999999999995 999993 45555 66678
Q ss_pred ccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCceE
Q 004952 576 EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEV 655 (722)
Q Consensus 576 ~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~ 655 (722)
++.|..+ +||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|. +||+|.+|+|++.+++..| +.
T Consensus 400 ~~~f~~~------g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~g-~~ 471 (539)
T 1mdb_A 400 AASFTED------GFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLL-AHPAVHDAAMVSMPDQFLG-ER 471 (539)
T ss_dssp HHHBCTT------SCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHT-TSTTEEEEEEEEEEETTTE-EE
T ss_pred hhhccCC------CCeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHH-hCCCcceEEEEeccccccC-ce
Confidence 8888643 39999999999999999999999999999999999999999995 9999999999999998877 89
Q ss_pred EEEEEEecCCCCCCHHHHHHHHHHH-HHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhhhhhh
Q 004952 656 LVIFVVLKKGFTSQPDKLKMIFSKA-IQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKHELSV 718 (722)
Q Consensus 656 l~a~vv~~~~~~~~~~~l~~~l~~~-l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~~~~~ 718 (722)
++|||++++ ...+.++|+++|+++ ||.||+|. ++++++||+|+||||||++|++++.++++.
T Consensus 472 ~~a~vv~~~-~~~~~~~l~~~l~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~i~~ 535 (539)
T 1mdb_A 472 SCVFIIPRD-EAPKAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKLLA 535 (539)
T ss_dssp EEEEEEESS-SCCCHHHHHHHHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHHHHHT
T ss_pred EEEEEEECC-CCCCHHHHHHHHHhCCCCcccCCCEEEEeccCCCCCCcCEeHHHHHHHHHHHHhc
Confidence 999999874 456778999999998 99999995 558999999999999999999999888764
No 10
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=1.5e-79 Score=690.26 Aligned_cols=482 Identities=21% Similarity=0.210 Sum_probs=403.2
Q ss_pred cCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 004952 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (722)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl 263 (722)
+++++||++|+++.+.. .++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 25 ~a~~~p~~~A~~~~~~~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl 98 (517)
T 3r44_A 25 RATVSPRLQAYVEPSTD------VRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPI 98 (517)
T ss_dssp HHHHSTTSEEEEEGGGT------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEEC
T ss_pred HHHhCCCCeEEEeCCcC------ceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Confidence 34789999999986542 3899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCC--cEEEEcCCCCCCCCCCCCCCCCHHHHhcccCC
Q 004952 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDY 341 (722)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (722)
+|.++.+++.+++++++++++|++.... +....+...... ..+.+. ....+.+.......
T Consensus 99 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~ 160 (517)
T 3r44_A 99 NTRLAAPEVSFILSDSGSKVVIYGAPSA------PVIDAIRAQADPPGTVTDWI------------GADSLAERLRSAAA 160 (517)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECGGGH------HHHHHHHHSSSCCTTCCEEE------------EHHHHHHHHHHCCC
T ss_pred CcccCHHHHHHHHHhcCceEEEECCchH------HHHHHHHhccCCccEEEEcc------------CcccHHHHhhccCc
Confidence 9999999999999999999999987532 222222221111 011010 01123343333221
Q ss_pred CCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhc
Q 004952 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421 (722)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~ 421 (722)
..+.....+++++||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|+.++..++.+++.
T Consensus 161 -----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~~~ 235 (517)
T 3r44_A 161 -----DEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMR 235 (517)
T ss_dssp -----CCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHHHHHHHHH
T ss_pred -----CCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHhc
Confidence 123345578999999999999999999999999999999888888999999999999999999999876677779
Q ss_pred CCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCccc
Q 004952 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (722)
Q Consensus 422 G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~ 501 (722)
|+++++.+ ..++..+++.|+++++|++.++|++++.|.+.......++++||.+++|||++++++.+++... +++++
T Consensus 236 G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~--~~~~~ 312 (517)
T 3r44_A 236 GVTLISMP-QFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAK--NIEVV 312 (517)
T ss_dssp TCEEEECS-SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSCCCHHHHHHHHHT--TCEEE
T ss_pred CeEEEEeC-CCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCCCCHHHHHHHHhc--CCcEE
Confidence 99999987 4688999999999999999999999999988654445568999999999999999999888775 68999
Q ss_pred ccccccccccccccCCcC-CcCccccccccCCCceEEEECCCCCcCCCCCCccceEEEe-----cccCCCcccccccccc
Q 004952 502 ESCGGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF-----PLYLGASDRLLNADHE 575 (722)
Q Consensus 502 n~YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~-----~~y~~~~~~~~~~~~t 575 (722)
|.||+||+++..+..... .....+++|+|+++++++|+|++|+++|.| . |||+|. .||++ +++.|
T Consensus 313 ~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g-~--GEl~v~g~~v~~GY~~------~p~~t 383 (517)
T 3r44_A 313 QGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREHG-E--GEVVIKSDILLKEYWN------RPEAT 383 (517)
T ss_dssp EEEECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEECTTSCEESSE-E--EEEEEEETTSCSEETT------CHHHH
T ss_pred EeecccccccceeecCCccccccCCCCCcCCCCeEEEEECCCCCCCCCC-C--eEEEEeCcchhhhhCC------Chhhh
Confidence 999999998755443332 234567899999999999999999999988 3 999993 45554 66788
Q ss_pred ccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCceE
Q 004952 576 EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEV 655 (722)
Q Consensus 576 ~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~ 655 (722)
++.|.. +||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|. +||+|.+|+|++.+++..| +.
T Consensus 384 ~~~f~~-------g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~~~Vv~~~~~~~g-~~ 454 (517)
T 3r44_A 384 RDAFDN-------GWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVII-GVPGVSEVAVIGLPDEKWG-EI 454 (517)
T ss_dssp HHTEET-------TEEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHT-TSTTEEEEEEEEEEETTTE-EE
T ss_pred HhhhcC-------CCEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHH-hCCCEeEEEEEeccccccC-ce
Confidence 888842 39999999999999999999999999999999999999999995 9999999999999998877 88
Q ss_pred EEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhhhhh
Q 004952 656 LVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKHELS 717 (722)
Q Consensus 656 l~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~~~~ 717 (722)
++++| ..++...+.++|+++|+++||.||+|. ++++++||+|+||||||++|++.+.+.+.
T Consensus 455 ~~a~v-~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~~ 516 (517)
T 3r44_A 455 AAAIV-VADQNEVSEQQIVEYCGTRLARYKLPKKVIFAEAIPRNPTGKILKTVLREQYSATVP 516 (517)
T ss_dssp EEEEE-EECTTTCCHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTCCBCHHHHHHHHGGGCC
T ss_pred EEEEE-ECCCCCCCHHHHHHHHHHhCCCCCCCCEEEEECCCCCCCCcCccHHHHHHHHHhhcc
Confidence 88888 555566788999999999999999995 55999999999999999999999987754
No 11
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=3.9e-78 Score=692.99 Aligned_cols=484 Identities=18% Similarity=0.215 Sum_probs=403.0
Q ss_pred CCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCCCC
Q 004952 190 DNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268 (722)
Q Consensus 190 pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~p~~~ 268 (722)
||++|+++.++ ++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+|+|++|||++|.+|
T Consensus 39 pd~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG~~~vpl~~~~~ 110 (617)
T 3rg2_A 39 SDSIAVIDGER--------QLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQ 110 (617)
T ss_dssp CCSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEEECTTCC
T ss_pred CCCeEEecCCc--------eEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhcCeEEccCCcccc
Confidence 99999999877 999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCC-cEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCCCCCC
Q 004952 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNY 347 (722)
Q Consensus 269 ~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (722)
.+++.++++++++++++++...... ........+....+. ..+.+... .....+.+....... .
T Consensus 111 ~~~l~~~l~~~~~~~vl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~-----~ 175 (617)
T 3rg2_A 111 RSELNAYASQIEPALLIADRQHALF-SGDDFLNTFVTEHSSIRVVQLLND---------SGEHNLQDAINHPAE-----D 175 (617)
T ss_dssp HHHHHHHHHHHCCSEEEEETTSGGG-SSSHHHHHHHHHSTTCCEEEEETC---------CSTTBHHHHHHSCCS-----S
T ss_pred HHHHHHHHhhcCceEEEeccccccc-ccHHHHHHHhhcCCccceeeeccc---------ccccchhhhhccccc-----c
Confidence 9999999999999999998753210 000111222222222 22222111 112234444433221 1
Q ss_pred CCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchh--HHHHHHhhcCCEE
Q 004952 348 YSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP--VILFSSFLNGATL 425 (722)
Q Consensus 348 ~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~--~~~~~~L~~G~~l 425 (722)
.......++++|||+|||||||.||||+++|+++++.+.+....+++.+++++++.+|++|.++. +++|.+|+.|+++
T Consensus 176 ~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~ 255 (617)
T 3rg2_A 176 FTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTV 255 (617)
T ss_dssp CCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEE
T ss_pred cCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEE
Confidence 22334567999999999999999999999999999999988888999999999999997776665 4699999999999
Q ss_pred EEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCC--CCCCccceeEEEeecCCCCcchHHHHHhhccCCccccc
Q 004952 426 ALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL--EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 503 (722)
Q Consensus 426 v~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~--~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n~ 503 (722)
++.+ ..++..+++.|+++++|++.++|+++..|++.... ...++++||.+++|||++++++.+++...+ +++++|.
T Consensus 256 v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~-~~~~~~~ 333 (617)
T 3rg2_A 256 VLAA-DPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEI-GCQLQQV 333 (617)
T ss_dssp EECS-SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHHHHT-CSEEEEE
T ss_pred EEeC-CCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHHHHh-CCcEEEE
Confidence 9987 36778899999999999999999999999875322 233689999999999999999999888765 6899999
Q ss_pred ccccccccccccCCcCCcCccccccccC-CCceEEEECCCCCcCCCCCCccceEEE-----ecccCCCcccccccccccc
Q 004952 504 CGGTELSSAYIQGSLLQPQAFGAFSTAT-MTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEV 577 (722)
Q Consensus 504 YG~TE~~~~~~~~~~~~~~~~~~iG~p~-~~~~~~vld~~~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~t~~ 577 (722)
||+||+++.++...........++|+|+ ++++++|+|++++++|.|++ |||+| +.||++ +++.|++
T Consensus 334 YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~p~G~~--GEl~i~G~~v~~GY~~------~p~~t~~ 405 (617)
T 3rg2_A 334 FGMAEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEV--GRLMTRGPYTFRGYYK------SPQHNAS 405 (617)
T ss_dssp EEETTEEEEECCTTSCHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCC--EEEEEECSSSCSCCTT------CHHHHHH
T ss_pred eccCcceeecccCCCcccccccCCCccCCCCceEEEECCCCCCCCCCCc--eEEEecCccccchhcC------Chhhhhh
Confidence 9999998755443332223346899998 78899999999999999996 99998 355655 6678899
Q ss_pred ceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEEE
Q 004952 578 YFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLV 657 (722)
Q Consensus 578 ~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~ 657 (722)
+|..++ ||||||+|++++||+|+|+||+|||||++|+||+|+|||++|. +||+|.+|+|++.+++..+ +.++
T Consensus 406 ~f~~~~------~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~-~~p~V~~a~vv~~~~~~~~-~~~~ 477 (617)
T 3rg2_A 406 AFDANG------FYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLL-RHPAVIYAALVSMEDELMG-EKSC 477 (617)
T ss_dssp HBCTTS------CEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHT-TSTTEEEEEEEEEEETTTE-EEEE
T ss_pred ccCCCC------ceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHH-hCCCeeEEEEEeccCcccC-eeEE
Confidence 997544 9999999999999999999999999999999999999999995 9999999999999988777 8999
Q ss_pred EEEEecCCCCCCHHHHHHHHHH-HHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhhhh
Q 004952 658 IFVVLKKGFTSQPDKLKMIFSK-AIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKHEL 716 (722)
Q Consensus 658 a~vv~~~~~~~~~~~l~~~l~~-~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~~~ 716 (722)
+|++..+ ..+.+++++++++ .||.||+|. ++++++||+|+||||||++|++++....
T Consensus 478 a~vv~~~--~~~~~~l~~~l~~~~lp~~~vP~~~~~v~~lP~t~~GKidR~~L~~~~~~~~ 536 (617)
T 3rg2_A 478 AYLVVKE--PLRAVQVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASRA 536 (617)
T ss_dssp EEEEESS--CCCHHHHHHHHHTTTCCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHHHH
T ss_pred EEEEeCC--CCCHHHHHHHHHhCCCccccCCcEEEEecccCCCCCCCCcHHHHHHHHhccc
Confidence 9999876 4667899999998 699999994 6699999999999999999999876653
No 12
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=2.4e-78 Score=680.00 Aligned_cols=481 Identities=20% Similarity=0.213 Sum_probs=410.7
Q ss_pred cCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh--cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEe
Q 004952 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM--FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVS 262 (722)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~--v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vp 262 (722)
+|+++||++|+++.++ ++||+||+++++++|++|++. +++||+|+++++|++++++++|||+++|++++|
T Consensus 10 ~a~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~vp 81 (511)
T 3e7w_A 10 HAETYPQTDAFRSQGQ--------SLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYIP 81 (511)
T ss_dssp HHHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHCCCCeEEEcCCc--------eeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCEEEe
Confidence 3478999999998777 999999999999999999885 789999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCC
Q 004952 263 IADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (722)
Q Consensus 263 l~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (722)
++|.++.+++.+++++++++++|+++.... . ... .......+.++......
T Consensus 82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~-----~-------~~~----------------~~~~~~~~~~~~~~~~~- 132 (511)
T 3e7w_A 82 VDLSIPSERIAKIIESSGAELLIHAAGLSI-----D-------AVG----------------QQIQTVSAEELLENEGG- 132 (511)
T ss_dssp EETTSCHHHHHHHHHHHTCCEEEESSSCCT-----T-------CCC----------------CSSCEEEHHHHHTSCSC-
T ss_pred cCCCChHHHHHHHHHhCCCCEEEecccccc-----h-------hcc----------------cccceecHhhhhccccC-
Confidence 999999999999999999999999753210 0 000 00112334454443221
Q ss_pred CCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcC
Q 004952 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNG 422 (722)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G 422 (722)
.........+++++||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|+.+++.++.+|+.|
T Consensus 133 ---~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G 209 (511)
T 3e7w_A 133 ---SVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSG 209 (511)
T ss_dssp ---CCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHHHHHHHHTT
T ss_pred ---CccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHHHHHHHhcC
Confidence 11122345679999999999999999999999999999999888889999999999999999999999999999999
Q ss_pred CEEEEecCC--CChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCcc
Q 004952 423 ATLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (722)
Q Consensus 423 ~~lv~~~~~--~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l 500 (722)
+++++.+.. .++..+++.|+++++|++.++|++++.++.........++++|.+++|||++++++.+++.+.++++++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i 289 (511)
T 3e7w_A 210 GTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKI 289 (511)
T ss_dssp CEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEE
T ss_pred CEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEE
Confidence 999998642 467889999999999999999999999998876666778999999999999999999999999888999
Q ss_pred cccccccccccccccCCcC----CcCccccccccCCCceEEEECCCCCcCCCCCCccceEEEe-----cccCCCcccccc
Q 004952 501 IESCGGTELSSAYIQGSLL----QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF-----PLYLGASDRLLN 571 (722)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~----~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~-----~~y~~~~~~~~~ 571 (722)
+|.||+||+++.++..... ......++|+|+++++++|+|++|+++|.|+. |||+|. .||++ +
T Consensus 290 ~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~--GEl~v~g~~v~~GY~~------~ 361 (511)
T 3e7w_A 290 FNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQPLPEGEK--GEIVIAGPSVSRGYLG------E 361 (511)
T ss_dssp EECCCCGGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEECTTSCBCCTTCC--EEEEEESTTSCCCBTT------C
T ss_pred EeCcccchheeeeeEEeccccccccCCcCCCcceeCCCEEEEECCCCCCCCCCCc--eEEEEecCccChhhCC------C
Confidence 9999999998765433221 12345679999999999999999999999996 999993 45554 6
Q ss_pred ccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCC
Q 004952 572 ADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGG 651 (722)
Q Consensus 572 ~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~ 651 (722)
++.|++.|... +|.+||+|||+|++ +||+|+|+||+||+||++|+||+|.|||++|. +||+|.+|+|++.+++..
T Consensus 362 ~~~t~~~f~~~---~g~~~~~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~ 436 (511)
T 3e7w_A 362 PELTEKAFFSH---EGQWAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVR-QSQYVRSAVVIPYQPNGT 436 (511)
T ss_dssp HHHHHHHEEES---SSSEEEEEEEEEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHHHHH-HSTTEEEEEEEEECSSSS
T ss_pred cccchhhhcCC---CCCEEEeCCCeEEc-cCCeEEEEccccCEEEECCEEeCHHHHHHHHH-hCCCcceEEEEEEcCCCC
Confidence 67888888653 36679999999999 69999999999999999999999999999995 999999999999998877
Q ss_pred CceEEEEEEEecCCCCCC----HHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhhhhhhc
Q 004952 652 GPEVLVIFVVLKKGFTSQ----PDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKHELSVR 719 (722)
Q Consensus 652 g~~~l~a~vv~~~~~~~~----~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~~~~~~ 719 (722)
+ +.++|+|+++++...+ .++++++|+++||.||+|. ++++++||+|+||||||++|++.+..+-...
T Consensus 437 ~-~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~v~~lP~t~~GKi~R~~L~~~~~~~~~~~ 508 (511)
T 3e7w_A 437 V-EYLIAAIVPEEHEFEKEFQLTSAIKKELAASLPAYMIPRKFIYQDHIQMTANGKIDRKRIGEEVLVRSHHH 508 (511)
T ss_dssp C-CEEEEEEEECCCCCSSHHHHHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHHHHHTCC
T ss_pred c-eEEEEEEEeccccccchhhHHHHHHHHHHhhCchhhCCeeEEEeccCCCCCCcCccHHHHHhHHhhhcccc
Confidence 7 8999999998765444 2678999999999999995 5599999999999999999999988765443
No 13
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=2.1e-78 Score=686.73 Aligned_cols=467 Identities=19% Similarity=0.196 Sum_probs=392.5
Q ss_pred cCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 004952 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (722)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl 263 (722)
+++++||++|+++.+. ++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 48 ~a~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl 119 (563)
T 1amu_A 48 QVSKRPNNVAIVCENE--------QLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPI 119 (563)
T ss_dssp HHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHHCCCCeEEEeCCc--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEe
Confidence 3468999999998776 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCC--CcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCC
Q 004952 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP--LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDY 341 (722)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (722)
+|.++.+++.+++++++++++|+++.... ...... .....+... . + ....
T Consensus 120 ~~~~~~~~l~~il~~~~~~~li~~~~~~~----------~~~~~~~~~~~~~~~~~-----------~--~----~~~~- 171 (563)
T 1amu_A 120 DIEYPKERIQYILDDSQARMLLTQKHLVH----------LIHNIQFNGQVEIFEED-----------T--I----KIRE- 171 (563)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECGGGHH----------HHTTSCCCSEEEECCCS-----------T--T----TTSC-
T ss_pred CCCCcHHHHHHHHHhcCCCEEEEcCchhh----------hhhhccccCceeeecch-----------h--h----cccc-
Confidence 99999999999999999999999875321 111111 111111100 0 0 0000
Q ss_pred CCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhc
Q 004952 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421 (722)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~ 421 (722)
.........+++++||+|||||||.||||+++|+++.+.+.+....++++++|++++++|++|+.+++.++.+|+.
T Consensus 172 ----~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~ 247 (563)
T 1amu_A 172 ----GTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLT 247 (563)
T ss_dssp ----CSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHHHHHTT
T ss_pred ----CccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHHHHHHHC
Confidence 0011123467899999999999999999999999999988888788999999999999999999999999999999
Q ss_pred CCEEEEecCC--CChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCc
Q 004952 422 GATLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA 499 (722)
Q Consensus 422 G~~lv~~~~~--~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~ 499 (722)
|+++++.+.. .++..+++.|+++++|++.++|+++..|... .+++||.+++|||++++++.+++.+. ++
T Consensus 248 G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------~~~~lr~~~~gG~~l~~~~~~~~~~~---~~ 318 (563)
T 1amu_A 248 GASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------RILSIQTLITAGSATSPSLVNKWKEK---VT 318 (563)
T ss_dssp TCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT------TCCSCSEEEEESSCCCHHHHHHHTTT---SE
T ss_pred CCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc------ccccccEEEEEEecCCHHHHHHHHhC---Ce
Confidence 9999998642 4778899999999999999999999877432 36899999999999999998888653 68
Q ss_pred ccccccccccccccccCCcC--CcCccccccccCCCceEEEECCCCCcCCCCCCccceEEEe-----cccCCCccccccc
Q 004952 500 IIESCGGTELSSAYIQGSLL--QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF-----PLYLGASDRLLNA 572 (722)
Q Consensus 500 l~n~YG~TE~~~~~~~~~~~--~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~-----~~y~~~~~~~~~~ 572 (722)
++|.||+||++++++..... ......++|+|+++++++|+|++|+++|.|+. |||+|. .||++ ++
T Consensus 319 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~g~~--GEl~v~g~~v~~GY~~------~p 390 (563)
T 1amu_A 319 YINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEA--GELCIGGEGLARGYWK------RP 390 (563)
T ss_dssp EEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEECTTSCBCCTTCE--EEEEEEETTCCCEETT------CH
T ss_pred EEEEECcCHHhHhheeeecccccCCCCCcccceeCCCEEEEECCCcCCCCCCCc--EEEEEechhhChhhCC------Cc
Confidence 99999999998655433221 22345689999999999999999999999995 999993 34554 67
Q ss_pred cccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCC
Q 004952 573 DHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGG 652 (722)
Q Consensus 573 ~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g 652 (722)
+.|++.|..+|+.+|.+||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|. +||+|.+|+|++.+++..+
T Consensus 391 e~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~-~~p~V~~a~Vv~~~~~~~~ 469 (563)
T 1amu_A 391 ELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILL-KHMYISETAVSVHKDHQEQ 469 (563)
T ss_dssp HHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHT-TSTTEEEEEEEEEECTTSC
T ss_pred hhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHH-hCCCcceEEEEEeecCCCC
Confidence 789999998888888899999999999999999999999999999999999999999995 9999999999999988777
Q ss_pred ceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHH
Q 004952 653 PEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQI 712 (722)
Q Consensus 653 ~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~ 712 (722)
+.++|||++.. ..+.++|+++++++||.||+|. ++++++||+|+||||||++|++..
T Consensus 470 -~~~~a~vv~~~--~~~~~~l~~~l~~~L~~y~~P~~i~~v~~lP~t~~GKi~r~~L~~~~ 527 (563)
T 1amu_A 470 -PYLCAYFVSEK--HIPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPEPD 527 (563)
T ss_dssp -EEEEEEEEESS--CCCHHHHHHHHHHHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCCCC
T ss_pred -eEEEEEEEeCC--CCCHHHHHHHHHhhCchhhCCcEEEEecccCCCCCcChhHHhcCCcc
Confidence 89999999864 4567899999999999999995 558999999999999999998754
No 14
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=1.3e-78 Score=682.55 Aligned_cols=483 Identities=19% Similarity=0.229 Sum_probs=402.6
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 004952 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (722)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~ 264 (722)
++++||++|+++.++ ++||+||+++++++|++|++. +++||+|+++++|++++++++|||+++|++++|++
T Consensus 11 a~~~p~~~A~~~~~~--------~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~vpl~ 82 (512)
T 3fce_A 11 AAETPDQTAFVWRDA--------KITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIPVD 82 (512)
T ss_dssp HHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHCCCceEEEeCCc--------eEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEeeC
Confidence 468999999999877 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCCC
Q 004952 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (722)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (722)
|.++.+++.+++++++++++|++...... ..+.. ++. ...+.+.......
T Consensus 83 ~~~~~~~l~~il~~~~~~~~i~~~~~~~~------------~~~~~--~~~-------------~~~~~~~~~~~~~--- 132 (512)
T 3fce_A 83 LSIPADRVQRIAENSGAKLLLSATAVTVT------------DLPVR--IVS-------------EDNLKDIFFTHKG--- 132 (512)
T ss_dssp TTSCHHHHHHHHHHSCCCEEEESSCCCSS------------CCSSE--EEE-------------THHHHHHHHHTTT---
T ss_pred CCCcHHHHHHHHHhcCCCEEEecCccccc------------ccccc--eec-------------hhhhhhhcccccc---
Confidence 99999999999999999999998532100 00000 000 0012222211111
Q ss_pred CCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcCCE
Q 004952 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGAT 424 (722)
Q Consensus 345 ~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~ 424 (722)
....+.....+++++||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|+.+++.++.+++.|++
T Consensus 133 ~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~ 212 (512)
T 3fce_A 133 NTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGT 212 (512)
T ss_dssp CCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCE
T ss_pred cCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCE
Confidence 11122334568999999999999999999999999999999988888999999999999999999999999999999999
Q ss_pred EEEecCC--CChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCcccc
Q 004952 425 LALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE 502 (722)
Q Consensus 425 lv~~~~~--~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n 502 (722)
+++.+.. .++..+++.|+++++|++.++|+++..++........++++||.+++|||++++++.+++.+.+++++++|
T Consensus 213 ~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~ 292 (512)
T 3fce_A 213 LWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMN 292 (512)
T ss_dssp EEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEE
T ss_pred EEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEe
Confidence 9998742 47789999999999999999999999998877666778899999999999999999999999988899999
Q ss_pred cccccccccccccCCcC----CcCccccccccCCCceEEEECCCCCcCCCCCCccceEEEe-----cccCCCcccccccc
Q 004952 503 SCGGTELSSAYIQGSLL----QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF-----PLYLGASDRLLNAD 573 (722)
Q Consensus 503 ~YG~TE~~~~~~~~~~~----~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~-----~~y~~~~~~~~~~~ 573 (722)
.||+||++++++..... ......++|+|+++++++|+|++|+++|.|+. |||+|. .||++ +++
T Consensus 293 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~--GEl~v~g~~v~~GY~~------~~~ 364 (512)
T 3fce_A 293 TYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDGTIAPDGEK--GEIVIVGPSVSVGYLG------SPE 364 (512)
T ss_dssp EECCGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEECSSSCBCCTTSC--EEEEEESTTSCSCBTT------CHH
T ss_pred CcccChhhhheeeEEeccccccccCCCccccccCCcEEEEECCCCCCCCCCCe--EEEEEeccccChhhcC------Cch
Confidence 99999998765433221 12245689999999999999999999999995 999993 45554 667
Q ss_pred ccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCc
Q 004952 574 HEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGP 653 (722)
Q Consensus 574 ~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~ 653 (722)
.|++.|... +|++||+|||+|++ +||+|+|+||+||+||++|+||+|.|||++|. +||+|.+|+|++++++..+
T Consensus 365 ~t~~~f~~~---~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~~- 438 (512)
T 3fce_A 365 LTEKAFTMI---DGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLR-ACSYVEGAVIVPIKKGEKY- 438 (512)
T ss_dssp HHHHHEEEE---TTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHH-HSTTEEEEEEEEEEETTEE-
T ss_pred hhhhccccC---CCCEEEeCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHH-hCCCcceEEEEEEecCCCc-
Confidence 888888532 36779999999999 89999999999999999999999999999995 9999999999999988777
Q ss_pred eEEEEEEEecCCCCCCH----HHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhhhhhhcc
Q 004952 654 EVLVIFVVLKKGFTSQP----DKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKHELSVRS 720 (722)
Q Consensus 654 ~~l~a~vv~~~~~~~~~----~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~~~~~~~ 720 (722)
+.++|+|++.++...+. ++++++|+++||.||+|. ++++++||+|+||||||++|++.+.++-+.++
T Consensus 439 ~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~~~~lP~t~~GKi~R~~L~~~~~~~~~~~~ 510 (512)
T 3fce_A 439 DYLLAVVVPGEHSFEKEFKLTSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSEVTALEHHHH 510 (512)
T ss_dssp EEEEEEEEECSCCCSSHHHHHHHHHHHHHTTSCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHC------
T ss_pred eEEEEEEecCCccccchhhhHHHHHHHHHhhCchhcCCeEEEEecccCCCCCcChHHHHHHhhhhhcccccc
Confidence 88999999987543332 578999999999999995 55899999999999999999999988765544
No 15
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=1.6e-77 Score=672.23 Aligned_cols=473 Identities=20% Similarity=0.190 Sum_probs=391.9
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 004952 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (722)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~ 264 (722)
++++||++|+++.+.+ +++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|+|
T Consensus 12 a~~~p~~~a~~~~~~~------~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~ 85 (504)
T 1t5h_X 12 ATRAPDHCALAVPARG------LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLN 85 (504)
T ss_dssp HHHCTTSEEEEETTTT------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEEEEEC
T ss_pred HHhCCCceEEEEcCCC------ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Confidence 4689999999986211 2899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEe--ccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCC
Q 004952 265 DSFAAREIATRLRVSKAKGIFT--QDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (722)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (722)
|.++.+++.+++++++++++|+ +.... ..+....+... ++ .++++.......
T Consensus 86 ~~~~~~~l~~~l~~~~~~~~i~~~~~~~~---------~~~~~~~~~~~-~~----------------~~~~~~~~~~~~ 139 (504)
T 1t5h_X 86 PRLKSAELAELIKRGEMTAAVIAVGRQVA---------DAIFQSGSGAR-II----------------FLGDLVRDGEPY 139 (504)
T ss_dssp TTSCHHHHHHHHHHTTCSEEEECC--CHH---------HHHHHHCCCCE-EE----------------EGGGTEETTEEC
T ss_pred CccChHHHHHHHhhcCCcEEEEecchhhh---------hhhhhccccce-eE----------------EecchhhcCccc
Confidence 9999999999999999999999 54321 11101111111 11 122222211000
Q ss_pred CCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCC--CCCCEEEEecCccccchh-HHHHHHh
Q 004952 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDL--KVGDVYCWPTNLGWVMGP-VILFSSF 419 (722)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~--~~~d~~l~~~~~~~~~~~-~~~~~~L 419 (722)
......+.....+++++||+|||||||.||||+++|+++.+.+.+....+++ ++++++++..|++|+.++ ..++.+|
T Consensus 140 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l 219 (504)
T 1t5h_X 140 SYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAAL 219 (504)
T ss_dssp CCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHHH
T ss_pred ccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHHH
Confidence 0000111134467999999999999999999999999999988887777888 889999999999999998 6688999
Q ss_pred hcCCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcC-C-CCCCCccceeEEEeecCCCCcchHHHHHhhccC
Q 004952 420 LNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTN-C-LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWY 497 (722)
Q Consensus 420 ~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~-~-~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~ 497 (722)
+.|+++++.+ ..++..+++.|+++++|+++++|++++.|.+.. . ....++++||.+++|||++++++.+++.+.+ +
T Consensus 220 ~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~ 297 (504)
T 1t5h_X 220 ALDGTYVVVE-EFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHL-P 297 (504)
T ss_dssp HTTCEEEECS-SCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHHHHHHC-C
T ss_pred HcCceEEeCC-CCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHHHHHhc-C
Confidence 9999999987 468889999999999999999999999998764 2 2445689999999999999999999998876 4
Q ss_pred CcccccccccccccccccCCcCCcCccccccccCCCceEEEECCCC---CcCCCCCCccceEEEe------cccCCCccc
Q 004952 498 NAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECG---VPYPDDQPCVGEVGLF------PLYLGASDR 568 (722)
Q Consensus 498 ~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~---~~~p~G~~giGel~v~------~~y~~~~~~ 568 (722)
++++|.||+||+++++.. . ....+++|+|.++++++|+|+++ +++|.|+. |||+|. .||++
T Consensus 298 ~~~~~~YG~TE~~~~~~~--~--~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~--GEl~v~gg~~~~~GY~~---- 367 (504)
T 1t5h_X 298 GEKVNIYGTTEAMNSLYM--R--QPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEE--GELIVAASDSAFVGYLN---- 367 (504)
T ss_dssp SEEEEEEEETTTEEEEEE--E--SCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCC--EEEEEECCTTSCCCBTT----
T ss_pred cceeeeeccccccccccc--c--CCCCCccccCCCCCceeEEeccCCCCCcCCCCCc--ceEEEeCCceeeceecC----
Confidence 789999999999433221 1 23457899999999999999888 99999995 999996 24444
Q ss_pred cccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecC
Q 004952 569 LLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSP 648 (722)
Q Consensus 569 ~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~ 648 (722)
+++.|++.|.. | ||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|. +||+|.+|+|++.++
T Consensus 368 --~~~~t~~~f~~-----g--~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~Vv~~~~ 437 (504)
T 1t5h_X 368 --QPQATAEKLQD-----G--WYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLG-TAPGVTEVVVIGLAD 437 (504)
T ss_dssp --CHHHHHHHEET-----T--EEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHT-TSTTEEEEEEEEEEC
T ss_pred --CchhhhhhhcC-----C--ccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHH-hCCCcceEEEEEeec
Confidence 66778888842 3 9999999999999999999999999999999999999999995 999999999999999
Q ss_pred CCCCceEEEEEEEecCCCCCCHHHHHHHHHH-HHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHh
Q 004952 649 AGGGPEVLVIFVVLKKGFTSQPDKLKMIFSK-AIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIK 713 (722)
Q Consensus 649 ~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~-~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~ 713 (722)
+..| +.++|||+++++...+.+++++++++ +||.||+|+ ++++++||+|+||||||++|+++++
T Consensus 438 ~~~g-~~~~a~vv~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 438 QRWG-QSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQVS 503 (504)
T ss_dssp SSSS-EEEEEEEEECTTCCCCHHHHHHHHHTSSCCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHC
T ss_pred CCCC-cEEEEEEEecCCcCcCHHHHHHHHhhccCcccccceEEEEhhhCCCCCCCCEeHHHHHHHhc
Confidence 8888 89999999988777788999999998 999999995 5589999999999999999999864
No 16
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=1.2e-77 Score=679.33 Aligned_cols=490 Identities=18% Similarity=0.162 Sum_probs=408.4
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 004952 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (722)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~ 264 (722)
++++ |++|+++.+.+ +++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|++
T Consensus 36 ~~~~-~~~A~~~~~~~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~~Gav~vpl~ 108 (548)
T 2d1s_A 36 YAKL-GAIAFTNAVTG------VDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTN 108 (548)
T ss_dssp HHHH-TCEEEEETTTC------CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCEEEEEC
T ss_pred hccc-CCceEEEcCCC------CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhhCCEEeccC
Confidence 3567 99999974211 2899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCC--CcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCC
Q 004952 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP--LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (722)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (722)
|.++.+++.+++++++++++|+++... +.+..+....+ ..++.+.... ...+...|.++......
T Consensus 109 ~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~- 175 (548)
T 2d1s_A 109 EIYTLRELVHSLGISKPTIVFSSKKGL------DKVITVQKTVTTIKTIVILDSKV------DYRGYQCLDTFIKRNTP- 175 (548)
T ss_dssp TTSCHHHHHHHHHHHCCSEEEECTTTH------HHHHHHHHHSTTCCEEEETTCSS------CBTTBCBHHHHHHHTSC-
T ss_pred CCCCHHHHHHHHHhcCCeEEEEcHHHH------HHHHHHhcCCCCCCEEEEeCCcc------cccccccHHHHHhcCcc-
Confidence 999999999999999999999987532 22222222232 2222222110 00122346666554321
Q ss_pred CCCCCCCCccC------CCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhh---cCCCCCCEEEEecCccccchhH
Q 004952 343 PRPNYYSPVYN------PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH---IDLKVGDVYCWPTNLGWVMGPV 413 (722)
Q Consensus 343 ~~~~~~~~~~~------~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~d~~l~~~~~~~~~~~~ 413 (722)
. ..+.... .+++++||+|||||||.||||+++|+++.+.+.+.... ++++++|++++.+|++|+.+++
T Consensus 176 -~--~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~ 252 (548)
T 2d1s_A 176 -P--GFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMF 252 (548)
T ss_dssp -T--TCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHH
T ss_pred -c--cCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHH
Confidence 0 0111111 23899999999999999999999999999888777665 6889999999999999999986
Q ss_pred H-HHHHhhcCCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHH
Q 004952 414 I-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLS 492 (722)
Q Consensus 414 ~-~~~~L~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~ 492 (722)
. ++.++ .|+++++.+ ..++..+++.|+++++|++.++|++++.|.+.......++++||.+++|||++++++.+++.
T Consensus 253 ~~~~~~l-~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~ 330 (548)
T 2d1s_A 253 TTLGYLI-CGFRVVMLT-KFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVA 330 (548)
T ss_dssp HHHHHHH-TTCEEEECC-CCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSSCCCHHHHHHHH
T ss_pred HHHHHHh-cCcEEEEcC-CCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcCccCCHHHHHHHH
Confidence 6 55667 999999987 46889999999999999999999999999987655556789999999999999999999999
Q ss_pred hhccCCcccccccccccccccccCCcCCcCccccccccCCCceEEEEC-CCCCcCCCCCCccceEEEe-----cccCCCc
Q 004952 493 SKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGLF-----PLYLGAS 566 (722)
Q Consensus 493 ~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~~p~G~~giGel~v~-----~~y~~~~ 566 (722)
+.+++++++|.||+||++.+++... ......+++|+|+++++++|+| ++|+++|.|+. |||+|. .||++
T Consensus 331 ~~~~~~~i~~~YG~TE~~~~~~~~~-~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~--GEl~v~g~~v~~GY~~-- 405 (548)
T 2d1s_A 331 RRFNLPGVRQGYGLTETTSAIIITP-EGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRR--GEVCVKGPMLMKGYVN-- 405 (548)
T ss_dssp HHTTCSCCEEEEECGGGSSEEEECC-TTCCCTTCCBEECTTCEEEEECTTTCCBCCTTCC--EEEEEESTTSCSEETT--
T ss_pred HHcCCCceeeccccccccceeeecC-cccCCCCCCCccCCCceEEEEeCCcCccCCCCCC--eEEEECCHHHhhhhcC--
Confidence 8887889999999999987654432 2234567999999999999999 78999999995 999993 35554
Q ss_pred cccccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEee
Q 004952 567 DRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISV 646 (722)
Q Consensus 567 ~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~ 646 (722)
+++.|++.|.. .+||+|||+|++++||+++|+||+||+||++|+||+|.|||++|. +||+|.+|+|++.
T Consensus 406 ----~~~~t~~~f~~------~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~-~~p~V~~a~V~~~ 474 (548)
T 2d1s_A 406 ----NPEATKELIDE------EGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLL-QHPSIFDAGVAGV 474 (548)
T ss_dssp ----CHHHHHHHBCT------TSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHH-TSTTEEEEEEEEE
T ss_pred ----ChHHhhhcccC------CcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHH-hCCCccEEEEEEE
Confidence 56678777753 239999999999999999999999999999999999999999995 9999999999999
Q ss_pred cCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCC--eeecCCCCCCCCchhhHHHHHHHHhhhhh
Q 004952 647 SPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL--FKVVPEFPRTASNKLLRRVLRDQIKHELS 717 (722)
Q Consensus 647 ~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~--~~~v~~lP~t~~GKvdR~~L~~~~~~~~~ 717 (722)
+++..| +.++|||+++++...+.++|+++|+++|+.|++|. ++++++||+|+|||++|++|++++.+.++
T Consensus 475 ~~~~~g-~~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~p~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~i~ 546 (548)
T 2d1s_A 475 PDPVAG-ELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREILKKPVA 546 (548)
T ss_dssp EETTTE-EEEEEEEEECTTCCCCHHHHHHHHHTTSCGGGSCTTCEEECSSCCBCTTSCBCHHHHHHHHHSCC-
T ss_pred EcCCCC-eeeEEEEEEcCCCCCCHHHHHHHHHHhccccccccccEEEccCCCCCCcchhHHHHHHHHHhhhhh
Confidence 998887 89999999988777788999999999999999997 55899999999999999999999987765
No 17
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=4.5e-79 Score=694.61 Aligned_cols=471 Identities=20% Similarity=0.231 Sum_probs=310.4
Q ss_pred cCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 004952 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (722)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl 263 (722)
+++++||++|+++.++ ++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 84 ~a~~~pd~~A~~~~~~--------~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl 155 (570)
T 4gr5_A 84 QAARAPDAVALLHEAD--------ELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYTML 155 (570)
T ss_dssp HHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHHCCCCeEEECCCC--------cEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHHCCEEEEc
Confidence 3478999999999777 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCC
Q 004952 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (722)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (722)
+|.++.+++.+++++++++++|+++...... .....++.... ....
T Consensus 156 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~-------------~~~~~~~~~~~----------------~~~~----- 201 (570)
T 4gr5_A 156 DPQFPVERLALSLEDTGAPLLVTSRPLSGRL-------------TGTTTLYVEDE----------------AASD----- 201 (570)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECTTTTTSS-------------CSSEEEECCC--------------------------
T ss_pred CCCChHHHHHHHHHhcCCCEEEecchhhhcc-------------cCCcceeeecc----------------cccc-----
Confidence 9999999999999999999999987532111 11111110000 0000
Q ss_pred CCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcCC
Q 004952 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGA 423 (722)
Q Consensus 344 ~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~ 423 (722)
...........+++++||+|||||||.||||+++|+++.+.+.+ ...++++++|++++.+|++|+.+.+.++.+|+.|+
T Consensus 202 ~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~ 280 (570)
T 4gr5_A 202 APAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGA 280 (570)
T ss_dssp --CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTC
T ss_pred ccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCC
Confidence 01111223456899999999999999999999999999877655 45678899999999999999999999999999999
Q ss_pred EEEEecC-CCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCcccc
Q 004952 424 TLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE 502 (722)
Q Consensus 424 ~lv~~~~-~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n 502 (722)
++++.+. ..++..+++.|+++++|++.++|++++.|++... .++++||.+++|||+++++..+++.+.+++++++|
T Consensus 281 ~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~ 357 (570)
T 4gr5_A 281 RCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVP---EAFEGVRYAITGGEPASVPHVAKARRDHPALRLGN 357 (570)
T ss_dssp EEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCG---GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEE
T ss_pred EEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhch---hhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEE
Confidence 9999864 4578899999999999999999999999987643 34789999999999999999888888888899999
Q ss_pred cccccccccccccCCc---CCcCccccccccCCCceEEEECCCCCcCCCCCCccceEEE-----ecccCCCccccccccc
Q 004952 503 SCGGTELSSAYIQGSL---LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADH 574 (722)
Q Consensus 503 ~YG~TE~~~~~~~~~~---~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~ 574 (722)
.||+||++++.+.... .......++|+|+++++++|+|++++++|.|+. |||+| +.||++ +++.
T Consensus 358 ~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~~~~~~~G~~--GEl~v~g~~v~~GY~~------~~~~ 429 (570)
T 4gr5_A 358 GYGPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLDDDLKPAANGAL--GELYVAGAGLAHGYVS------RPAL 429 (570)
T ss_dssp EECCGGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEECTTSCBCCTTCE--EEEEEEETTCCCEETT------CHHH
T ss_pred eechhhheeeeeeeeecccccCCCccccceeeCCCEEEEECCCCCCCCCCCc--EEEEEeecccchhcCC------Cchh
Confidence 9999999865443222 122344679999999999999999999999995 99999 345554 6678
Q ss_pred cccceecccc--CCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCC
Q 004952 575 EEVYFRGMPM--YKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGG 652 (722)
Q Consensus 575 t~~~f~~~p~--~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g 652 (722)
|++.|..+|+ .++.+||||||+|++|+||+|+|+||+|||||++|+||+|.|||++|. +||+|.+|+|++.+++.++
T Consensus 430 t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~-~~p~V~~a~Vv~~~~~~~~ 508 (570)
T 4gr5_A 430 TAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLV-GHPAVRQAAVLAQDSRLGD 508 (570)
T ss_dssp HHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC------------------------------------------
T ss_pred hhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHh-cCCCcceEEEEEeeCCCCC
Confidence 9999988876 356789999999999999999999999999999999999999999995 9999999999999888777
Q ss_pred ceEEEEEEEecCC-CCCCHHHHHHHHHHHHHhhcCC-CeeecCCCCCCCCchhhHHHHHHH
Q 004952 653 PEVLVIFVVLKKG-FTSQPDKLKMIFSKAIQSKLNP-LFKVVPEFPRTASNKLLRRVLRDQ 711 (722)
Q Consensus 653 ~~~l~a~vv~~~~-~~~~~~~l~~~l~~~l~~~~~p-~~~~v~~lP~t~~GKvdR~~L~~~ 711 (722)
+.++|||+++++ ...+.++|+++|+++||.||+| .++++++||+|+||||||++|++.
T Consensus 509 -~~~~a~vv~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~ 568 (570)
T 4gr5_A 509 -KQLVAYVVAERADAPPDAAELRRHVAEALPAYMVPVECVPVDELPRTPNGKLDRRALTGS 568 (570)
T ss_dssp -------------------------------------------------------------
T ss_pred -eEEEEEEEecCCCCCcCHHHHHHHHHhhCccccCCcEEEEcccCCCCCCcCcchHhhhcc
Confidence 899999998753 3456789999999999999999 466899999999999999999875
No 18
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=2.4e-78 Score=730.23 Aligned_cols=555 Identities=19% Similarity=0.201 Sum_probs=327.2
Q ss_pred HHHHHHHhhCHHHHHHHHHhhcceeeecCCeeeccCCCCCCCCCCcCCCCccchhhhcccCcccCCCCCCceEEEEecCC
Q 004952 122 RLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDR 201 (722)
Q Consensus 122 ~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~~~~l~~~~~a~~~pd~~Al~~~~~~ 201 (722)
++.+..||++|+.++..+++.+...+..+.....-... ..........+.. ..+.+ +++++||++|+++.+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~p~~~tl~-~~l~~--~a~~~pd~~Al~~~~~~ 86 (979)
T 3tsy_A 14 LVPRGSHMARMAPQEQAVSQVMEKQSNNNNSDVIFRSK----LPDIYIPNHLSLH-DYIFQ--NISEFATKPCLINGPTG 86 (979)
T ss_dssp -------------------------------CCCBCCS----SCCCCCCTTSCHH-HHHTT--TGGGTTTSEEEEETTTC
T ss_pred cccCcchhhhhhhHHHHHHHhhhhcccCCCCCceeecC----CCCCCCCCCCCHH-HHHHH--HHHhCCCCeEEEECCCC
Confidence 99999999999999999988775544443322211110 0000001111222 22322 45789999999986321
Q ss_pred CCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhcC
Q 004952 202 CDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSK 280 (722)
Q Consensus 202 ~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~p~~~~~~l~~~l~~~~ 280 (722)
+++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|++|.++.+++.+++++++
T Consensus 87 ------~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~ 160 (979)
T 3tsy_A 87 ------HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASN 160 (979)
T ss_dssp ------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHT
T ss_pred ------cEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcC
Confidence 3899999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCCCCCCCCCccCCCCCeEE
Q 004952 281 AKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVN 360 (722)
Q Consensus 281 ~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 360 (722)
++++|+++... +....+.......++.+... .......+...+.++...... .....+.....+++++|
T Consensus 161 ~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~a~ 229 (979)
T 3tsy_A 161 TKLIITEARYV------DKIKPLQNDDGVVIVCIDDN---ESVPIPEGCLRFTELTQSTTE--ASEVIDSVEISPDDVVA 229 (979)
T ss_dssp EEEEEECSTTT------TTSHHHHHTSCCEEEECCCC---TTSCCCTTEEEGGGTSSCCSG--GGGGSCCSCCCTTSEEE
T ss_pred CeEEEEChHHH------HHHHHHhhcCCceEEEeCCc---ccccCCcccccHHHHhhcccc--ccccCCcCCCCccceEE
Confidence 99999997543 22233333222333333211 111122233445554433221 01122334567899999
Q ss_pred EEcCCCCCCCCceEEeCChHHHHHHHHhhh----hcCCCCCCEEEEecCccccchh-HHHHHHhhcCCEEEEecCCCChh
Q 004952 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWA----HIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLALYQGSPLER 435 (722)
Q Consensus 361 il~TSGSTG~PKgV~~th~~~~~~~~~~~~----~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~~G~~lv~~~~~~~~~ 435 (722)
|+|||||||.||||+++|+++++.+.+... .+++.++|++++..|++|+.++ ..++.+|..|+++++.+ ..++.
T Consensus 230 i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~-~~~~~ 308 (979)
T 3tsy_A 230 LPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMP-KFEIN 308 (979)
T ss_dssp CCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECS-SCCHH
T ss_pred EEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeC-CCCHH
Confidence 999999999999999999999887765533 4568899999999999999998 45788999999999987 46788
Q ss_pred hHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCccccccccccccccccc
Q 004952 436 SFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQ 515 (722)
Q Consensus 436 ~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~ 515 (722)
.+++.|+++++|++.++|+++..|.+.......++++||.+++|||++++++.+++.+.+++++++|.||+||++.+++.
T Consensus 309 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~ 388 (979)
T 3tsy_A 309 LLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAM 388 (979)
T ss_dssp HHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEEE
T ss_pred HHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhHHHHh
Confidence 99999999999999999999999998876667789999999999999999999999998888999999999999865443
Q ss_pred CC----cCCcCccccccccCCCceEEEEC-CCCCcCCCCCCccceEEEe-----cccCCCccccccccccccceeccccC
Q 004952 516 GS----LLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGLF-----PLYLGASDRLLNADHEEVYFRGMPMY 585 (722)
Q Consensus 516 ~~----~~~~~~~~~iG~p~~~~~~~vld-~~~~~~p~G~~giGel~v~-----~~y~~~~~~~~~~~~t~~~f~~~p~~ 585 (722)
.. ...+...+++|+|+++++++|+| ++|+++|.|++ |||+|. .||++ +++.|++.|..+
T Consensus 389 ~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~--GEl~i~g~~v~~GY~~------~p~~t~~~f~~~--- 457 (979)
T 3tsy_A 389 SLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQP--GEICIRGHQIMKGYLN------NPAATAETIDKD--- 457 (979)
T ss_dssp CGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCC--EEEEEESTTSCSEETT------CHHHHHHHBCTT---
T ss_pred CCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCc--cEEEEECCCccccccC------ChhhhhhhccCC---
Confidence 32 12234567899999999999999 56999999996 999993 45555 667888888543
Q ss_pred CCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEEEEEEEecCC
Q 004952 586 KGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKG 665 (722)
Q Consensus 586 ~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~a~vv~~~~ 665 (722)
+||||||+|++++||+|+|+||+|||||++|+||+|.|||++|. +||+|.+|+|++++++..+ +.++|||+..++
T Consensus 458 ---g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~-~~p~V~~~~Vv~~~~~~~g-~~~~a~vv~~~~ 532 (979)
T 3tsy_A 458 ---GWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLI-GHPDITDVAVVAMKEEAAG-EVPVAFVVKSKD 532 (979)
T ss_dssp ---SCEEEEEEEEECTTSCEEEEEESCC----------------------------------------------------
T ss_pred ---CcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHH-hCCCcceEEEEEecccCCC-cEEEEEEEECCC
Confidence 39999999999999999999999999999999999999999995 9999999999999988777 899999998877
Q ss_pred CCCCHHHHHHHHHHHHHhhcCC-CeeecCCCCCCCCchhhHHHHHHHHhhhhh
Q 004952 666 FTSQPDKLKMIFSKAIQSKLNP-LFKVVPEFPRTASNKLLRRVLRDQIKHELS 717 (722)
Q Consensus 666 ~~~~~~~l~~~l~~~l~~~~~p-~~~~v~~lP~t~~GKvdR~~L~~~~~~~~~ 717 (722)
...+.++|+++|+++||.||+| .++++++||+|+||||||++|++++.+.++
T Consensus 533 ~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~ 585 (979)
T 3tsy_A 533 SELSEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAKLANGLG 585 (979)
T ss_dssp -----------------------------------------------------
T ss_pred CCCCHHHHHHHHHHhcccccCCeEEEEeCCcCcCCCCCeeHHHHHHHHHhhcC
Confidence 6777789999999999999999 566999999999999999999999876543
No 19
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=8.4e-77 Score=674.67 Aligned_cols=515 Identities=22% Similarity=0.262 Sum_probs=414.1
Q ss_pred CCCCcCCCCccchhhhcccCcc---cCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh--cCCCCEEE
Q 004952 163 HGGTWLPGSVLNIAECCLLPSN---HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM--FSKGDAIA 237 (722)
Q Consensus 163 ~~~~w~~~~~~~~~~~~l~~~~---~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~--v~~gd~V~ 237 (722)
.+..|+.+...|....++.+++ +++++||++|+++.+.. +..+++||+||+++++++|++|++. +++||+|+
T Consensus 27 ~~~~~~~~~~~~~~~~~l~~~a~~~~a~~~p~~~al~~~~~~---g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~ 103 (570)
T 3c5e_A 27 QWGHQEVPAKFNFASDVLDHWADMEKAGKRPPSPALWWVNGK---GKELMWNFRELSENSQQAANVLSGACGLQRGDRVA 103 (570)
T ss_dssp CCCBCCCCSBCCHHHHTHHHHHHHHHTTSSCCCEEEEEECSS---SCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEE
T ss_pred ccccccCCccccHHHHHHHHHHhhccccCCCCceEEEEEcCC---CceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEE
Confidence 3456776666676666665543 23449999999985421 1234899999999999999999986 99999999
Q ss_pred EEcCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCC--cEEEEc
Q 004952 238 IDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLP 315 (722)
Q Consensus 238 l~~~~s~~~vv~~lA~~~aGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 315 (722)
|+++|++++++++|||+++|++++|++|.++.+++.+++++++++++|+++... +....+....+. .++++.
T Consensus 104 i~~~n~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~ 177 (570)
T 3c5e_A 104 VVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVI------QEVDTVASECPSLRIKLLVS 177 (570)
T ss_dssp EECCSCHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTH------HHHHHHGGGCTTCCEEEEES
T ss_pred EEcCCCHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHH------HHHHHHhhcCCceeEEEEec
Confidence 999999999999999999999999999999999999999999999999987432 222222333332 223332
Q ss_pred CCCCCCCCCCCCCCCCHHHHhcccCCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHH-HHHHhhhhcCC
Q 004952 316 AIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIR-CTAEGWAHIDL 394 (722)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~-~~~~~~~~~~~ 394 (722)
... ..+...+.+++..... ..+.....+++++||+|||||||.||||+++|+.+.+ ...+. ..+++
T Consensus 178 ~~~-------~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~-~~~~~ 244 (570)
T 3c5e_A 178 EKS-------CDGWLNFKKLLNEAST-----THHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDA-GWTGL 244 (570)
T ss_dssp SSC-------CTTSEEHHHHHHHSCS-----CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHT-TTTSC
T ss_pred ccC-------ccccccHHHHhhcccc-----cccccCCCCCCcEEEEECCCCCCCCCEEEechHHHHhhhhhhh-hhcCC
Confidence 110 1123356666544322 1122345679999999999999999999999994332 44444 66889
Q ss_pred CCCCEEEEecCccccchhH-HHHHHhhcCCEEEEecC-CCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccc
Q 004952 395 KVGDVYCWPTNLGWVMGPV-ILFSSFLNGATLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTK 472 (722)
Q Consensus 395 ~~~d~~l~~~~~~~~~~~~-~~~~~L~~G~~lv~~~~-~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~ 472 (722)
+++|++++.+|++|+.+++ .++.+|..|+++++.+. ..++..+++.|+++++|++.++|++++.|.+.. ....++++
T Consensus 245 ~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~ 323 (570)
T 3c5e_A 245 QASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD-LSSYKFPH 323 (570)
T ss_dssp CTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC-TTTCCCTT
T ss_pred CCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc-cccccccc
Confidence 9999999999999999985 68899999999999874 568889999999999999999999999998863 34456899
Q ss_pred eeEEEeecCCCCcchHHHHHhhccCCcccccccccccccccccCCcCCcCccccccccCCCceEEEECCCCCcCCCCCCc
Q 004952 473 IRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPC 552 (722)
Q Consensus 473 Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~g 552 (722)
||.+++|||++++++.+++.+.+ +++++|.||+||++++++... ......+++|+|+++++++|+|++|+++|.|+.
T Consensus 324 lr~i~~gGe~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~-~~~~~~~~vG~p~~~~~v~i~d~~g~~~~~G~~- 400 (570)
T 3c5e_A 324 LQNCVTVGESLLPETLENWRAQT-GLDIRESYGQTETGLTCMVSK-TMKIKPGYMGTAASCYDVQIIDDKGNVLPPGTE- 400 (570)
T ss_dssp CCEEEEESSCCCHHHHHHHHHHH-SCCCEEEEEETTTEEEEECCT-TSCCCTTCCCEECTTCCEEEECTTSCBCCTTCC-
T ss_pred ceEEEEcCCcCCHHHHHHHHHHh-CCchhhccchhhcccceecCc-ccccCCCcccccCCCceEEEECCCCCCCCCCCC-
Confidence 99999999999999999888766 688999999999986544332 223456799999999999999999999999995
Q ss_pred cceEEEe------cccCCCccccccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHH
Q 004952 553 VGEVGLF------PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVE 626 (722)
Q Consensus 553 iGel~v~------~~y~~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~e 626 (722)
|||+|. ++.+. .|+.+++.|++.|.. +||+|||+|++++||+|+|+||+|||||++|+||+|.|
T Consensus 401 -GEl~v~~~~~~g~~v~~--GY~~~~~~t~~~f~~-------~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~e 470 (570)
T 3c5e_A 401 -GDIGIRVKPIRPIGIFS--GYVDNPDKTAANIRG-------DFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSE 470 (570)
T ss_dssp -EEEEEECSSBCCTTCCC--EETTCHHHHHHTEET-------TEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHH
T ss_pred -CeeEEeccCCCCchhhc--cccCChhHhhhhhcC-------CccccceeEEEcCCceEEEEecCCCEEEECCEEECHHH
Confidence 999995 21111 123356778888852 39999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCcceeEEEeecCCCCCceEEEEEEEecCCC--CC---CHHHHHHHHHHHHHhhcCCC-eeecCCCCCCCC
Q 004952 627 IERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGF--TS---QPDKLKMIFSKAIQSKLNPL-FKVVPEFPRTAS 700 (722)
Q Consensus 627 IE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~a~vv~~~~~--~~---~~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~ 700 (722)
||++|. +||+|.+|+|++.+++..| +.++|||++.++. .. ..++|+++|+++||.||+|. ++++++||+|+|
T Consensus 471 IE~~l~-~~p~V~~a~Vv~~~~~~~g-~~~~a~vv~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~ 548 (570)
T 3c5e_A 471 VENALM-EHPAVVETAVISSPDPVRG-EVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVT 548 (570)
T ss_dssp HHHHHH-TSTTEEEEEEEEEEETTTE-EEEEEEEEECGGGTTSCHHHHHHHHHHHHHHHSCGGGSCSEEEEESCCCBCTT
T ss_pred HHHHHH-hCCCcceEEEEeeeCCCCC-eEEEEEEEECCcccCcchHHHHHHHHHHHHhhCccccCCcEEEEeccCCCCCC
Confidence 999995 9999999999999998777 8999999987653 11 14689999999999999995 558999999999
Q ss_pred chhhHHHHHHHHhhh
Q 004952 701 NKLLRRVLRDQIKHE 715 (722)
Q Consensus 701 GKvdR~~L~~~~~~~ 715 (722)
|||||++|++.+...
T Consensus 549 GKi~R~~L~~~~~~~ 563 (570)
T 3c5e_A 549 GKIQRAKLRDKEWKM 563 (570)
T ss_dssp CCBCHHHHHHHHTC-
T ss_pred cCCcHHHHHHHHHhh
Confidence 999999999987653
No 20
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=1.3e-78 Score=686.79 Aligned_cols=491 Identities=19% Similarity=0.203 Sum_probs=315.1
Q ss_pred cCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 004952 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (722)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl 263 (722)
+++++||++|+++.++ ++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 39 ~a~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~Gav~vpl 110 (544)
T 3o83_A 39 GVQSHPHSLAIICGER--------QLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNA 110 (544)
T ss_dssp HHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEEEC
T ss_pred HHHhCCCceEEEcCCC--------ceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEecC
Confidence 3478999999998877 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCC-cEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCC
Q 004952 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (722)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (722)
+|.++.+++.+++++++++++|++...... ........+...... ..+++.... .....+.++......
T Consensus 111 ~~~~~~~~l~~~l~~~~~~~li~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~- 180 (544)
T 3o83_A 111 LYSHRQYELNAFIKQIQPKLLIGSRQHEVF-SNNQFIDSLHDVNLSPEIILMLNHQ--------ATDFGLLDWIETPAE- 180 (544)
T ss_dssp CTTCCHHHHHHHHHHHCCSEEEEETTSGGG-SSSHHHHHHHHTTCCCSEEEEETCC--------TTSEEHHHHHHSCCS-
T ss_pred CCCCCHHHHHHHHHhcCeeEEEEccccccc-cHHHHHHHHhhcccCcceEEEecCC--------ccccchhhhhhcccc-
Confidence 999999999999999999999998753210 001112222222222 222221111 011234444433221
Q ss_pred CCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchhH--HHHHHhh
Q 004952 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV--ILFSSFL 420 (722)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~--~~~~~L~ 420 (722)
.........+++++||+|||||||.||||+++|+++.+.+.+....++++++|++++..|++|.+++. .++.+|+
T Consensus 181 ---~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~ 257 (544)
T 3o83_A 181 ---TFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLH 257 (544)
T ss_dssp ---SCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHSSHHHHHHH
T ss_pred ---cccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeecchHHHHHHHH
Confidence 11122345689999999999999999999999999999999888889999999999999988877764 6899999
Q ss_pred cCCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCcc
Q 004952 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (722)
Q Consensus 421 ~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l 500 (722)
.|+++++.+ ..++..+++.|+++++|++.++|+++..|++.......++++||.+++|||++++++.+++.+.+ ++++
T Consensus 258 ~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~~ 335 (544)
T 3o83_A 258 AGGCVVMAP-NPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVL-NCKL 335 (544)
T ss_dssp TTCEEEECS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCCCHHHHTHHHHHH-CSEE
T ss_pred cCCEEEECC-CCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCCCCHHHHHHHHHHh-CCcE
Confidence 999999987 46788999999999999999999999999887655556688999999999999999998888776 6899
Q ss_pred cccccccccccccccCCcCCcCccccccccC-CCceEEEECCCCCcCCCCCCccceEEEe-----cccCCCccccccccc
Q 004952 501 IESCGGTELSSAYIQGSLLQPQAFGAFSTAT-MTAGLVILDECGVPYPDDQPCVGEVGLF-----PLYLGASDRLLNADH 574 (722)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~-~~~~~~vld~~~~~~p~G~~giGel~v~-----~~y~~~~~~~~~~~~ 574 (722)
+|.||+||+++.++...........++|+|+ ++++++|+|++++++|.|+. |||+|. .||++ +++.
T Consensus 336 ~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~--GEl~v~g~~v~~GY~~------~~~~ 407 (544)
T 3o83_A 336 QQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSDDEIKIVDEQYREVPEGEI--GMLATRGPYTFCGYYQ------SPEH 407 (544)
T ss_dssp EEEEECTTSCEEECCTTSCHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCC--EEEEEECTTSCSCCTT------CHHH
T ss_pred EeeeccccccceeecCCCchhhccCCCceecCCCcEEEEECCCCCCCCCCCe--eEEEEecCCcchhhcC------Chhh
Confidence 9999999998654443333333457899996 89999999999999999995 999993 35554 6678
Q ss_pred cccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCce
Q 004952 575 EEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPE 654 (722)
Q Consensus 575 t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~ 654 (722)
|++.|..+ +||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|. +||+|.+|+|++++++..| +
T Consensus 408 t~~~f~~~------g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~g-~ 479 (544)
T 3o83_A 408 NSQVFDED------NYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLIL-LHPEVMHAALVAIVDEQFG-E 479 (544)
T ss_dssp HHHHBCTT------CCEEEEEEEEECTTSCEEEEEEEC------------------------------------------
T ss_pred hhhhCCCC------CCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHH-hCCCccEEEEEeccCCCCC-c
Confidence 88888543 39999999999999999999999999999999999999999995 9999999999999998888 8
Q ss_pred EEEEEEEecCCCCCCHHHHHHHHHH-HHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhhh
Q 004952 655 VLVIFVVLKKGFTSQPDKLKMIFSK-AIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKHE 715 (722)
Q Consensus 655 ~l~a~vv~~~~~~~~~~~l~~~l~~-~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~~ 715 (722)
.++|||+.++ ...+.+++++++++ +||.||+|. ++++++||+|+||||||++|+++++..
T Consensus 480 ~~~a~vv~~~-~~~~~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 541 (544)
T 3o83_A 480 KSCAFIVSRN-PELKAVVLRRHLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILNTS 541 (544)
T ss_dssp ---------------------------------------------------------------
T ss_pred eEEEEEEeCC-CCCCHHHHHHHHHhCCCCcccCCcEEEEeccCCCCCCCCCcHHHHHHHHhhc
Confidence 9999999876 34556789999999 799999994 669999999999999999999988753
No 21
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=7.5e-78 Score=678.11 Aligned_cols=483 Identities=16% Similarity=0.152 Sum_probs=392.0
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 004952 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (722)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~ 264 (722)
++++||++|+++.++ ++||+||+++++++|++|++. +++||+|+++++|++++++++|||+++|++++|++
T Consensus 14 a~~~p~~~a~~~~~~--------~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~vpl~ 85 (521)
T 3l8c_A 14 AQTQADFPVYDCLGE--------RRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAYIPVD 85 (521)
T ss_dssp HHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHCCCCcceecCCC--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEecC
Confidence 468999999998877 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCCC
Q 004952 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (722)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (722)
|.++.+++.+++++++++++|+++......... ....+.++...... .
T Consensus 86 ~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~--~ 133 (521)
T 3l8c_A 86 VHSAPERILAIIEIAKPSLIIAIEEFPLTIEGI------------------------------SLVSLSEIESAKLA--E 133 (521)
T ss_dssp TTSCHHHHHHHHHHSCCSEEEESSCCCSCCTTS------------------------------EEEEHHHHHHHHHH--T
T ss_pred ccccHHHHHHHHHhCCCCEEEecCccccccccC------------------------------cccchhhhhhcccc--c
Confidence 999999999999999999999987532111000 01112222111000 0
Q ss_pred CCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhh--cCCCCCCEEEEecCccccchhHHHHHHhhcC
Q 004952 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH--IDLKVGDVYCWPTNLGWVMGPVILFSSFLNG 422 (722)
Q Consensus 345 ~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~--~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G 422 (722)
..........+++++||+|||||||.||||+++|+++++.+.+.... +++.+++++++..+++|+.+.+.++.+++.|
T Consensus 134 ~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G 213 (521)
T 3l8c_A 134 MPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYWAPTLALG 213 (521)
T ss_dssp CCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHHHHHHHHHTT
T ss_pred CCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHHHHHHHHhcC
Confidence 01112234567999999999999999999999999999887776555 7788999999999999999998899999999
Q ss_pred CEEEEecCC--CChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCcc
Q 004952 423 ATLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (722)
Q Consensus 423 ~~lv~~~~~--~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l 500 (722)
+++++.+.. .++..+++.|.++++|++.++|+++..+.........++++||.+++|||++++++.+++.+.++++++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i 293 (521)
T 3l8c_A 214 GTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKI 293 (521)
T ss_dssp CEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEE
T ss_pred CEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceEEEEecccCCHHHHHHHHHHCCCceE
Confidence 999998743 377889999999999999999999999988766666778999999999999999999999998888999
Q ss_pred cccccccccccccccCCcC----CcCccccccccCCCceEEEECCCCCcCCCCCCccceEEEe-----cccCCCcccccc
Q 004952 501 IESCGGTELSSAYIQGSLL----QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF-----PLYLGASDRLLN 571 (722)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~----~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~-----~~y~~~~~~~~~ 571 (722)
+|.||+||+++.++..... ......++|+|+++++++|+|++|+++|.|+. |||+|. .||++ +
T Consensus 294 ~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~g~~--GEl~v~g~~v~~GY~~------~ 365 (521)
T 3l8c_A 294 INAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDEDGKELSSGEQ--GEIIVTGPAVSKGYLN------N 365 (521)
T ss_dssp EEEECCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEECTTSCBCCTTCC--EEEEEESTTSCSCBTT------C
T ss_pred EeCcCccHHhhhhceeecccccccCCCccccccccCCCEEEEECCCcCCCCCCCc--eEEEecccccChhhcC------C
Confidence 9999999998755433221 12244689999999999999999999999996 999993 35554 6
Q ss_pred ccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCC
Q 004952 572 ADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGG 651 (722)
Q Consensus 572 ~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~ 651 (722)
++.|++.|... ++.+||+|||+|++++||+++|+||+||+||++|+||+|.|||++|. +||+|.+|+|++.++...
T Consensus 366 ~~~t~~~f~~~---~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~ 441 (521)
T 3l8c_A 366 PEKTAEAFFTF---KGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLN-QSPMVASAVAVPRYNKEH 441 (521)
T ss_dssp HHHHHHHEEEE---TTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHH-TSTTEEEEEEECCCSSSC
T ss_pred chHhhccCcCC---CCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHH-cCCCcceEEEEEeecCCC
Confidence 67888888643 35679999999999999999999999999999999999999999995 999999999999876544
Q ss_pred CceEEEEEEEecCCCCCC-------HHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhhhhhhcc
Q 004952 652 GPEVLVIFVVLKKGFTSQ-------PDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKHELSVRS 720 (722)
Q Consensus 652 g~~~l~a~vv~~~~~~~~-------~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~~~~~~~ 720 (722)
+.+.++|||+++++...+ .++|+++|+++||.||+|. ++++++||+|+||||||++|++.+.++.++..
T Consensus 442 ~~~~~~a~vv~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKidr~~L~~~~~~~~~~~~ 518 (521)
T 3l8c_A 442 KVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTLINEVNNREGHHH 518 (521)
T ss_dssp C---CEEEEEECTTSGGGCSSHHHHHHHHHHHSGGGSCGGGSCSEEEECSSCCBCTTSSBCHHHHHHHTC-------
T ss_pred CceEEEEEEEecCccccccccchhhHHHHHHHHHhhCccccCCeEEEEecccCCCCCcCccHHHHhhhhhcCCcccc
Confidence 337899999998764321 4678999999999999995 55999999999999999999999988766654
No 22
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=3.9e-78 Score=682.45 Aligned_cols=488 Identities=22% Similarity=0.242 Sum_probs=365.6
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 004952 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (722)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~ 264 (722)
++++||++|+++.+. +..+++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|++
T Consensus 28 a~~~p~~~a~~~~~~----~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~ 103 (541)
T 1v25_A 28 AALFGRKEVVSRLHT----GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTAN 103 (541)
T ss_dssp HHHSTTCEEEEECTT----SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECC
T ss_pred HHhCCCceEEEEecC----CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEEecC
Confidence 368999999996321 1224899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCc--EEEEcCCCCCCCCCCCCCCCCHHHHhcccCCC
Q 004952 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLK--AIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (722)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (722)
|.++.+++.+++++++++++|+++... +....+....+.. ++++.... ..+...+.+++.....
T Consensus 104 ~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~- 169 (541)
T 1v25_A 104 PRLSPKEIAYILNHAEDKVLLFDPNLL------PLVEAIRGELKTVQHFVVMDEKA-------PEGYLAYEEALGEEAD- 169 (541)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEECGGGH------HHHHHHGGGCSSCCEEEESSSCC-------CTTCEEHHHHCCSCCC-
T ss_pred cccCHHHHHHHHHhCCCcEEEEChhHH------HHHHHHHhhCCCccEEEEecCCC-------CcccccHHHHhhccCC-
Confidence 999999999999999999999987532 2222333333221 22221110 0123346665443221
Q ss_pred CCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHh--hhhcCCCCCCEEEEecCccccchhHHHHHHhh
Q 004952 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG--WAHIDLKVGDVYCWPTNLGWVMGPVILFSSFL 420 (722)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~--~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~ 420 (722)
.....+++++||+|||||||.||||+++|+++++..... ...++++++|++++.+|++|+.++..++.+++
T Consensus 170 -------~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~ 242 (541)
T 1v25_A 170 -------PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATL 242 (541)
T ss_dssp -------CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHHHHHH
T ss_pred -------cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHHHHHHHHh
Confidence 123467899999999999999999999999998776653 34577899999999999999999877889999
Q ss_pred cCCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCcc
Q 004952 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (722)
Q Consensus 421 ~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l 500 (722)
.|+++++.+...++..+++.|+++++|++.++|+++..|++.......++++||.+++|||++++++.+++ ..+ ++++
T Consensus 243 ~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~-g~~~ 320 (541)
T 1v25_A 243 VGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARF-ERM-GVEV 320 (541)
T ss_dssp HTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHH-HHT-TCEE
T ss_pred cCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECCCCCCHHHHHHH-HHh-CCce
Confidence 99999998755688999999999999999999999999987644344568999999999999999998888 444 7899
Q ss_pred cccccccccccccccCCcCC----------cCccccccccCCCceEEEECCCCCcCCC-C-CCccceEEEe-----cccC
Q 004952 501 IESCGGTELSSAYIQGSLLQ----------PQAFGAFSTATMTAGLVILDECGVPYPD-D-QPCVGEVGLF-----PLYL 563 (722)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~~----------~~~~~~iG~p~~~~~~~vld~~~~~~p~-G-~~giGel~v~-----~~y~ 563 (722)
+|.||+||++.+++...... ....+++|+|+++++++|+|++|+++|. | + +|||+|. .||+
T Consensus 321 ~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~~~~~--~GEl~v~g~~v~~GY~ 398 (541)
T 1v25_A 321 RQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKA--LGEVQLKGPWITGGYY 398 (541)
T ss_dssp EEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTTSCBCCSSSCC--CEEEEEESTTSBSSCB
T ss_pred eecccccccccceecccccccccccCccccccccCCCCCcCCCcEEEEECCCCCCCCCCCCc--ceEEEEeCcchhcccc
Confidence 99999999987655443221 0234789999999999999999999985 3 4 5999993 4555
Q ss_pred CCccccccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEE
Q 004952 564 GASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAA 643 (722)
Q Consensus 564 ~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~v 643 (722)
+ +++.|++.|..+ +||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|. +||+|.+|+|
T Consensus 399 ~------~p~~t~~~f~~~------g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~-~~p~V~~a~V 465 (541)
T 1v25_A 399 G------NEEATRSALTPD------GFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALM-GHPKVKEAAV 465 (541)
T ss_dssp T------CHHHHHTTBCTT------SCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC-----------CE
T ss_pred C------ChhhhhhhccCC------CCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHH-hCCCceEEEE
Confidence 4 667788888642 39999999999999999999999999999999999999999995 9999999999
Q ss_pred EeecCCCCCceEEEEEEEecCCCCCCHHHHHHHHHH-HHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhhhhh
Q 004952 644 ISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSK-AIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKHELS 717 (722)
Q Consensus 644 v~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~-~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~~~~ 717 (722)
++.+++..+ +.++|||+++ +...+.+++++++++ +||.||+|. ++++++||+|+||||||++|++.+.+.++
T Consensus 466 v~~~~~~~~-~~~~a~vv~~-~~~~~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~ 539 (541)
T 1v25_A 466 VAIPHPKWQ-ERPLAVVVPR-GEKPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKNYYG 539 (541)
T ss_dssp EEEECSSSS-EEEEECC--------------------CCCTTTSCSBC--------------CCTTHHHHSTTSSC
T ss_pred EEecCCCcC-ceEEEEEEEC-CCCCCHHHHHHHHHhccCccccCCcEEEEeCCCCCCCccCeeHHHHHHHHHHhhC
Confidence 999998887 8999999987 444566889999999 899999995 55899999999999999999999876654
No 23
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=4e-78 Score=678.12 Aligned_cols=483 Identities=16% Similarity=0.133 Sum_probs=306.1
Q ss_pred cCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 004952 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (722)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl 263 (722)
+++++||++|+++.++ ++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 15 ~a~~~pd~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl 86 (509)
T 3ivr_A 15 NAALFPDRTAFMVDGV--------RLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPV 86 (509)
T ss_dssp HHHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHHCCCceEEEECCc--------EEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEEec
Confidence 3478999999999776 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCC
Q 004952 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (722)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (722)
+|.++.+++.+++++++++++|++.... +.........+....++.... ....+.++.....
T Consensus 87 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~--- 148 (509)
T 3ivr_A 87 NYRLNADEIAFVLGDGAPSVVVAGTDYR------DIVAGVLPSLGGVKKAYAIGD---------GSGPFAPFKDLAS--- 148 (509)
T ss_dssp CTTSCHHHHHHHHHHHCEEEEEECSTTH------HHHHHHGGGCSSCCEEEESSC---------CCSSCEEGGGTCC---
T ss_pred CCCCCHHHHHHHHHhcCceEEEECcchh------hhHHhhhcccCCceEEEEcCC---------CCcChhhHhhccC---
Confidence 9999999999999999999999987532 111122222222211211111 1112222222111
Q ss_pred CCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcCC
Q 004952 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGA 423 (722)
Q Consensus 344 ~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~ 423 (722)
....+.....+++++||+|||||||.||||+++|+++++.+.+....++++++|++++.+|++|++++..++.+++.|+
T Consensus 149 -~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g 227 (509)
T 3ivr_A 149 -DTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGG 227 (509)
T ss_dssp -CSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTC
T ss_pred -CCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCC
Confidence 1112234567899999999999999999999999999999998888999999999999999999999988878777777
Q ss_pred EEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCccccc
Q 004952 424 TLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 503 (722)
Q Consensus 424 ~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n~ 503 (722)
++++.. ..++..+++.|+++++|++.++|+++..|++.. ...++++||.++.+|++ +..+++...+++++++|.
T Consensus 228 ~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~ 301 (509)
T 3ivr_A 228 ASVIAA-KFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA--APAQLASLRAVTGLDTP---ETIERFEATCPNATFWAT 301 (509)
T ss_dssp EEEECS-SCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC--CGGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEE
T ss_pred cEEEec-ccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc--cccchhhhheecccCCh---HHHHHHHHhcCCCeEEcc
Confidence 777766 678899999999999999999999999998875 44568899999999987 777778888888999999
Q ss_pred ccccccccccccCCcCCcCccccccccCCCceEEEECCCCCcCCCCCCccceEEEe-----cccCCCccccccccccccc
Q 004952 504 CGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF-----PLYLGASDRLLNADHEEVY 578 (722)
Q Consensus 504 YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~-----~~y~~~~~~~~~~~~t~~~ 578 (722)
||+||++++++..... ....++|+|+++++++|+|++++++|.|+. |||+|. .||++ +++.|++.
T Consensus 302 YG~TE~~~~~~~~~~~--~~~~~~G~p~~~~~~~i~d~~~~~~~~g~~--GEl~v~g~~~~~gY~~------~~~~t~~~ 371 (509)
T 3ivr_A 302 FGQSETSGLSTFAPYR--DRPKSAGRPLFWRTVAVVDAEDRPLPPGEV--GEIVLRGPTVFKGYWN------NAAATQHA 371 (509)
T ss_dssp EEEGGGTEEEEEEEGG--GSTTSCCEECTTCEEEEECTTSCBCCTTCC--EEEEEESTTSCCEETT------CHHHHHHH
T ss_pred cCccccccccccCccc--cCCCcccccCCCcEEEEECCCCCCCCCCCc--eEEEEecCCccccccC------CHHHhHHH
Confidence 9999998765443322 223459999999999999999999999995 999993 45554 56678878
Q ss_pred eeccccCCCceecccCceEEEecCCcEEEEeec--CCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEE
Q 004952 579 FRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRA--DDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVL 656 (722)
Q Consensus 579 f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~--dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l 656 (722)
|. .+||+|||+|++++||+++|+||+ ||+||++|+||+|.|||++|. +||+|.+|+|++.+++..+ +.+
T Consensus 372 f~-------~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~-~~p~V~~a~vv~~~~~~~~-~~~ 442 (509)
T 3ivr_A 372 FR-------NGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALK-QHPAIADAVVIGVPDPQWS-EAI 442 (509)
T ss_dssp TG-------GGSEEEEEEEEECTTSCEEEEEEC-----------------------------------------------
T ss_pred hh-------cCCcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHH-hCCCceeEEEEeccccccC-cEE
Confidence 75 239999999999999999999999 999999999999999999995 9999999999999998877 899
Q ss_pred EEEEEecCCCCCCHHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhhhhhhc
Q 004952 657 VIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKHELSVR 719 (722)
Q Consensus 657 ~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~~~~~~ 719 (722)
+++|++.++...+.++|+++|+++||.||+|. ++++++||+|+||||||++|++++.+...++
T Consensus 443 ~a~v~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidr~~Lr~~~~~~~~~~ 506 (509)
T 3ivr_A 443 KAVCVCKPGESIAADALAEFVASLIARYKKPKHVVFVEALPKDAKGAIDRAAVKTAHGQEGHHH 506 (509)
T ss_dssp ----------------------------------------------------------------
T ss_pred EEEEEeCCCCCCCHHHHHHHHHhhCcccCCCcEEEEecCCCCCCCCCccHHHHHHHHhhccccc
Confidence 99999988777778899999999999999994 6699999999999999999999988876554
No 24
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=3.3e-78 Score=684.79 Aligned_cols=497 Identities=16% Similarity=0.175 Sum_probs=308.8
Q ss_pred CCCCCCceEEE---EecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEE
Q 004952 186 RRKEDNTVAIV---WREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVV 261 (722)
Q Consensus 186 a~~~pd~~Al~---~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~v 261 (722)
++++||++|++ +... .+++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++
T Consensus 30 a~~~p~~~a~~a~~~~~~------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v 103 (550)
T 3rix_A 30 MKRYALVPGTIAFTDAHI------EVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVA 103 (550)
T ss_dssp HHHHHTSTTCEEEEETTT------CCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCEEE
T ss_pred HHhCCCCceEEEeeecCC------CcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHHHHHHcCCEEe
Confidence 36788888865 3221 13899999999999999999999 99999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCC--cEEEEcCCCCCCCCCCCCCCCCHHHHhccc
Q 004952 262 SIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSV 339 (722)
Q Consensus 262 pl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (722)
|++|.++.+++.+++++++++++|+++... +.........+. .++++.... ...+..++.++....
T Consensus 104 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 171 (550)
T 3rix_A 104 PANDIYNERELLNSMNISQPTVVFVSKKGL------QKILNVQKKLPIIQKIIIMDSKT------DYQGFQSMYTFVTSH 171 (550)
T ss_dssp ECCTTCCHHHHHHHHHHHCCSEEEECGGGH------HHHHHHHHHCTTCCEEEETTCSS------CBTTBCBHHHHHHHH
T ss_pred ecCCcCCHHHHHHHHHhcCCeEEEEcHHHH------HHHHHHHhhCCCcceEEEEcCCc------cccCcccHHHHhhcc
Confidence 999999999999999999999999997532 222333333332 222222111 112344566665443
Q ss_pred CCCCC--CCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhh---cCCCCCCEEEEecCccccchhHH
Q 004952 340 DYHPR--PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH---IDLKVGDVYCWPTNLGWVMGPVI 414 (722)
Q Consensus 340 ~~~~~--~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~d~~l~~~~~~~~~~~~~ 414 (722)
..... ....+.....+++++||+|||||||.||||+++|+++++.+.+.... +++.+++++++..|++|+++++.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~ 251 (550)
T 3rix_A 172 LPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFT 251 (550)
T ss_dssp CCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHH
T ss_pred ccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHH
Confidence 22100 01111222346889999999999999999999999998887766554 57889999999999999999998
Q ss_pred HHHHhhcCCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhh
Q 004952 415 LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSK 494 (722)
Q Consensus 415 ~~~~L~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~ 494 (722)
++.+|+.|+++++.+ ..++..+++.|+++++|++.++|+++..|++.......++++||.+++|||++++++.+++.+.
T Consensus 252 ~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~ 330 (550)
T 3rix_A 252 TLGYLICGFRVVLMY-RFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKR 330 (550)
T ss_dssp HHHHHHHTCEEEECS-SCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEECSSCCCHHHHHHHHHH
T ss_pred HHHHHHcCCEEEEeC-CCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEEecCCCCHHHHHHHHHH
Confidence 999999999999986 4688899999999999999999999999998876667788999999999999999999999888
Q ss_pred ccCCcccccccccccccccccCCcCCcCccccccccCCCceEEEEC-CCCCcCCCCCCccceEEEe-----cccCCCccc
Q 004952 495 AWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGLF-----PLYLGASDR 568 (722)
Q Consensus 495 ~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~~p~G~~giGel~v~-----~~y~~~~~~ 568 (722)
++...++|.||+||+++.++.... .....+++|+|+++++++|+| ++|+++|.|+. |||+|. .||++
T Consensus 331 ~~~~~v~~~YG~TE~~~~~~~~~~-~~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~--GEl~v~g~~v~~GY~~---- 403 (550)
T 3rix_A 331 FHLPGIRQGYGLTETTSAILITPE-GDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQR--GELCVRGPMIMSGYVN---- 403 (550)
T ss_dssp TTCSCCEEEEECGGGSSEEEECCT-TCCCTTEEEEECTTCEEEEECTTTCCBCCTTCC--EEEEEESTTSCSEETT----
T ss_pred cCCCccccccCcCccccceecCCC-CCCCCCCcccccCCcEEEEEeCCCCcCCCCCCC--eEEEEeCCCcchhhcC----
Confidence 765569999999999976554433 335568999999999999999 57999999995 999993 45555
Q ss_pred cccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecC
Q 004952 569 LLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSP 648 (722)
Q Consensus 569 ~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~ 648 (722)
+++.|++.|..+ +||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|. +||+|.+|+|+++++
T Consensus 404 --~~~~t~~~~~~~------g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~ 474 (550)
T 3rix_A 404 --NPEATNALIDKD------GWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILL-QHPNIFDAGVAGLPD 474 (550)
T ss_dssp --CHHHHHHHBCTT------SCEEEEEEEEECTTCCEEEC----------------------------------------
T ss_pred --ChhhhhhhcCCC------CCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHH-hCCCcceEEEEEeec
Confidence 566777777532 39999999999999999999999999999999999999999995 999999999999999
Q ss_pred CCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhh-cCCC-eeecCCCCCCCCchhhHHHHHHHHhhhhhh
Q 004952 649 AGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSK-LNPL-FKVVPEFPRTASNKLLRRVLRDQIKHELSV 718 (722)
Q Consensus 649 ~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~-~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~~~~~ 718 (722)
+..| +.+++||+++++...+.++++++++++|+.+ ++|. ++++++||+|+||||||++|++++.+..+.
T Consensus 475 ~~~g-~~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~~ 545 (550)
T 3rix_A 475 DDAG-ELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKAKKG 545 (550)
T ss_dssp ------------------------------------------------------------------------
T ss_pred CCCC-ceEEEEEEecCCCCCCHHHHHHHHHHhcccccccCCceEEEeecCCCCCcceeHHHHHHHHHhhccc
Confidence 8887 8999999998877777789999999999987 4553 669999999999999999999998776544
No 25
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=1.6e-75 Score=660.10 Aligned_cols=491 Identities=23% Similarity=0.273 Sum_probs=390.1
Q ss_pred cchhhhcccCcccCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHH
Q 004952 173 LNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYL 251 (722)
Q Consensus 173 ~~~~~~~l~~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~l 251 (722)
.|.....+..++ + +||++|+++.+. ++||+||+++++++|++|++. +++||+|+|+++|++++++++|
T Consensus 23 ~~~~~~~l~~~~--~-~p~~~A~~~~~~--------~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~l 91 (529)
T 2v7b_A 23 FNFAAYLFRLNE--T-RAGKTAYIDDTG--------STTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFL 91 (529)
T ss_dssp CCHHHHHHHHTG--G-GTTSEEEECSSC--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHH
T ss_pred eeHHHHHHHhhh--c-cCCceEEEeCCC--------CccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHH
Confidence 344444554443 6 999999998765 999999999999999999999 9999999999999999999999
Q ss_pred HHHHhCcEEEecCCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCC---CcEEEEcCCCCCCCCCCCCC
Q 004952 252 AIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP---LKAIVLPAIGNDVGIPLREQ 328 (722)
Q Consensus 252 A~~~aGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 328 (722)
||+++|++++|++|.++.+++.+++++++++++|+++... +.........+ ..++++..... ....
T Consensus 92 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 160 (529)
T 2v7b_A 92 GALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALV------QNVTQALESAEHDGCQLIVSQPRES-----EPRL 160 (529)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGH------HHHHHHHHCC---CCEEEEECC-----------C
T ss_pred HHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhh------hHHHHHHhhccccCceEEEeccccc-----cccc
Confidence 9999999999999999999999999999999999987532 11222222111 22222221100 0001
Q ss_pred CCCHHHHhcccCCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHH-HHHHHHhhhhcCCCCCCEEEEecCcc
Q 004952 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSS-IRCTAEGWAHIDLKVGDVYCWPTNLG 407 (722)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~-~~~~~~~~~~~~~~~~d~~l~~~~~~ 407 (722)
...++++...... ........+++++||+|||||||.||||+++|+++ .+........+++.++|++++.+|++
T Consensus 161 ~~~~~~~~~~~~~-----~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~ 235 (529)
T 2v7b_A 161 APLFEELIDAAAP-----AAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLF 235 (529)
T ss_dssp CCBHHHHHHTSCC-----CSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTT
T ss_pred ccchhhhhccCCC-----cccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHH
Confidence 2246666543221 11223456799999999999999999999999999 66666666668899999999999999
Q ss_pred ccchhH-HHHHHhhcCCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcc
Q 004952 408 WVMGPV-ILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVD 486 (722)
Q Consensus 408 ~~~~~~-~~~~~L~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~ 486 (722)
|+.++. .++.+|..|+++++.+...++..+++.|+++++|++.++|+++..|+...........+||.+++|||+++++
T Consensus 236 ~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gGe~l~~~ 315 (529)
T 2v7b_A 236 FAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPRE 315 (529)
T ss_dssp SHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGGGCCCCEEEECSSCCCHH
T ss_pred HHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccccCCceEEEEEcCCCCCHH
Confidence 999985 4678999999999986567889999999999999999999999999876543332124899999999999999
Q ss_pred hHHHHHhhccCCcccccccccccccccccCCcCCcCccccccccCCCceEEEECCCCCcCCCCCCccceEEEe-----cc
Q 004952 487 DDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF-----PL 561 (722)
Q Consensus 487 ~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~-----~~ 561 (722)
+.+++.+.+ +++++|.||+||++.+++..... ....+++|+|+++++++|+|++|+++|.|+. |||+|. .|
T Consensus 316 ~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~~~-~~~~~~~G~p~~~~~~~i~d~~g~~~~~g~~--GEl~v~g~~~~~g 391 (529)
T 2v7b_A 316 IGERFTAHF-GCEILDGIGSTEMLHIFLSNRAG-AVEYGTTGRPVPGYEIELRDEAGHAVPDGEV--GDLYIKGPSAAVM 391 (529)
T ss_dssp HHHHHHHHH-SCCEEEEEECTTTSSEEEECCTT-CCCTTSCCEECTTCEEEEECTTSCBCCTTSC--EEEEEECTTCCCC
T ss_pred HHHHHHHHh-CCceeeeEchhhcCceeeccccC-CCccCCcccCCCCCEEEEECCCCCCCCCCCc--cEEEEecCCcccc
Confidence 999888766 68999999999997554443322 2456789999999999999999999999995 999993 34
Q ss_pred cCCCccccccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCccee
Q 004952 562 YLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILET 641 (722)
Q Consensus 562 y~~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~ 641 (722)
|++ +++.|++.|.. +||+|||+|++++||+|+|+||+||+||++|+||+|.|||++|. +||+|.+|
T Consensus 392 Y~~------~~~~t~~~f~~-------~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~~ 457 (529)
T 2v7b_A 392 YWN------NREKSRATFLG-------EWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLV-QHDAVLEA 457 (529)
T ss_dssp BTT------CHHHHHHHEET-------TEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHT-TSTTEEEE
T ss_pred cCC------ChHHHHHhhhc-------CCcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHH-hCCCcceE
Confidence 444 56678888852 39999999999999999999999999999999999999999995 99999999
Q ss_pred EEEeecCCCCCceEEEEEEEecCCCCCC---HHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHH
Q 004952 642 AAISVSPAGGGPEVLVIFVVLKKGFTSQ---PDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRD 710 (722)
Q Consensus 642 ~vv~~~~~~~g~~~l~a~vv~~~~~~~~---~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~ 710 (722)
+|++. ++..+ +.++|+|++.++...+ .++|+++|+++||.||+|. ++++++||+|+|||++|++|++
T Consensus 458 ~vv~~-~~~~~-~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 458 AVVGV-DHGGL-VKTRAFVVLKREFAPSEILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLRE 528 (529)
T ss_dssp EEEEE-EETTE-EEEEEEEEECTTCCCCHHHHHHHHHHHHTTSCTTTSCSEEEEESCCCBCTTSCBCHHHHHC
T ss_pred EEEEe-cCCCc-eEEEEEEEecCCCCcchhHHHHHHHHHHhhcchhhCCeEEEEeccCCCCCccchhHHhHhh
Confidence 99999 55555 8899999988754322 3679999999999999995 5589999999999999999985
No 26
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=5.8e-76 Score=658.68 Aligned_cols=457 Identities=19% Similarity=0.205 Sum_probs=365.5
Q ss_pred CCCCCC-ceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 004952 186 RRKEDN-TVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (722)
Q Consensus 186 a~~~pd-~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~ 264 (722)
++++|+ ++|+++.++ ++||+||+++++++|++|. .|++|+++++|++++++++|||+++|++++|+|
T Consensus 32 a~~~p~d~~Al~~~~~--------~~Ty~eL~~~~~~~A~~L~----~~~~V~i~~~~~~~~~~~~la~~~~Ga~~vpl~ 99 (505)
T 3nyq_A 32 PTGAPADRPALRFGER--------SLTYAELAAAAGATAGRIG----GAGRVAVWATPAMETGVAVVAALLAGVAAVPLN 99 (505)
T ss_dssp CCSGGGGSEEEEETTE--------EEEHHHHHHHHHHHHTTCC-------CEEEECCSSHHHHHHHHHHHHHTCCEEEEC
T ss_pred HHhCCCCCeEEEECCe--------eeeHHHHHHHHHHHHhhcc----CCCEEEEEcCCCHHHHHHHHHHHHhCCEEEEcC
Confidence 466776 999999877 9999999999999998775 589999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCCC
Q 004952 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (722)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (722)
|.+|.+++.+++++++++++|++.... .. .... ....+.+... .
T Consensus 100 ~~~~~~~l~~il~~~~~~~vi~~~~~~-----~~---~~~~--~~~~~~~~~~--------------------------~ 143 (505)
T 3nyq_A 100 PKSGDKELAHILSDSAPSLVLAPPDAE-----LP---PALG--ALERVDVDVR--------------------------A 143 (505)
T ss_dssp TTCCHHHHHHHHHHHCCSEEEECTTCC-----CC---GGGT--TSEEEECCTT--------------------------C
T ss_pred CCCCHHHHHHHHHHCCCCEEEECCccc-----cc---hhhc--cccccccccc--------------------------c
Confidence 999999999999999999999986421 00 0000 0011111000 0
Q ss_pred CCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchh-HHHHHHhhcCC
Q 004952 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGA 423 (722)
Q Consensus 345 ~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~~G~ 423 (722)
....+.....+++++||+|||||||.||||+++|+++.+.+.+....++++++|++++..|++|..+. +.++.+|+.|+
T Consensus 144 ~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~ 223 (505)
T 3nyq_A 144 RGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGG 223 (505)
T ss_dssp CCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTC
T ss_pred ccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCC
Confidence 00112234567999999999999999999999999999999988888999999999999999998887 57899999999
Q ss_pred EEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCC---CCCCccceeEEEeecCCCCcchHHHHHhhccCCcc
Q 004952 424 TLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL---EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (722)
Q Consensus 424 ~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~---~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l 500 (722)
++++.+ ..++..+++.+ ++++|+++++|+++..|.+.... ....++++|.+++|||++++++.+++...+ ++++
T Consensus 224 ~~~~~~-~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~-~~~~ 300 (505)
T 3nyq_A 224 SVRHLG-RFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAAT-GRRV 300 (505)
T ss_dssp EEEECS-SCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHHHH-SCCC
T ss_pred EEEECC-CCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHHhc-CCee
Confidence 999986 56778888888 88999999999999999874221 123468899999999999999988887764 6899
Q ss_pred cccccccccccccccCCcCCcCccccccccCCCceEEEECCCCCcCCC---CCCccceEEEe-----cccCCCccccccc
Q 004952 501 IESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPD---DQPCVGEVGLF-----PLYLGASDRLLNA 572 (722)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~---G~~giGel~v~-----~~y~~~~~~~~~~ 572 (722)
+|.||+||+++.++.. .......+++|+|++|++++|+|++|++++. |+. |||+|. .||++ ++
T Consensus 301 ~~~YG~TE~~~~~~~~-~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~~~~g~~--GEl~v~g~~v~~GY~~------~~ 371 (505)
T 3nyq_A 301 IERYGMTETLMNTSVR-ADGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESV--GEIQVRGPNLFTEYLN------RP 371 (505)
T ss_dssp EEEEEETTTEEEEECC-TTSCCCTTCCCEECTTCEEEEC-----CCCCCCSCCC--EEEEEESTTSCCEETT------CH
T ss_pred ecccchhhcccccccC-CCCCCCCCCcccCCCCCEEEEECCCCCCcccCCCCce--EEEEEecCchhhhhCC------Ch
Confidence 9999999998755443 3334556789999999999999999999986 774 999993 45555 66
Q ss_pred cccccceeccccCCCceecccCceEEEecCCcEEEEeec-CCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCC
Q 004952 573 DHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRA-DDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGG 651 (722)
Q Consensus 573 ~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~-dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~ 651 (722)
+.|++.|..++ ||+|||+|++++||+|+|+||+ |||||++|+||+|.|||++|. +||+|.+|+|++.+++..
T Consensus 372 ~~t~~~f~~~g------~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~-~~p~V~~a~Vv~~~~~~~ 444 (505)
T 3nyq_A 372 DATAAAFTEDG------FFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALL-EHPEVREAAVTGEPDPDL 444 (505)
T ss_dssp HHHHHTBCTTS------CEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHT-TSTTEEEEEEEEEEETTT
T ss_pred hHhhhhhcCCC------CCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHH-HCcCccEEEEEeeECCCC
Confidence 78888886543 9999999999999999999997 699999999999999999995 999999999999999888
Q ss_pred CceEEEEEEEecC-CCCCCHHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHH
Q 004952 652 GPEVLVIFVVLKK-GFTSQPDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRD 710 (722)
Q Consensus 652 g~~~l~a~vv~~~-~~~~~~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~ 710 (722)
+ +.++|||++.+ +...+.++|+++|+++||.||+|. ++++++||+|+||||||++|++
T Consensus 445 g-~~l~a~vv~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 445 G-ERIVAWIVPADPAAPPALGTLADHVAARLAPHKRPRVVRYLDAVPRNDMGKIMKRALNR 504 (505)
T ss_dssp E-EEEEEEEEESSTTSCCCHHHHHHHHHHHTCGGGSCSEEEECSCCCC-------------
T ss_pred C-cEEEEEEEECCCCCCCCHHHHHHHHHhhCCCCcCccEEEEECCCCCCCCcCeeHHhhcc
Confidence 7 89999999986 345677899999999999999995 5599999999999999999986
No 27
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=1e-74 Score=649.38 Aligned_cols=482 Identities=17% Similarity=0.203 Sum_probs=367.3
Q ss_pred cCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 004952 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (722)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~ 264 (722)
+++++||++|+++.++ ++||+||+++++++|++|++. +||+|+|+++|++++++++|||+++|++++|++
T Consensus 10 ~a~~~pd~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~--~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~ 79 (501)
T 3ipl_A 10 QAQQNGHHIAITDGQE--------SYTYQNLYCEASLLAKRLKAY--QQSRVGLYIDNSIQSIILIHACWLANIEIAMIN 79 (501)
T ss_dssp HHHHHTTSEEEECSSC--------EEEHHHHHHHHHHHHHHHHTT--CCSEEEEECCSSHHHHHHHHHHHHTTCEEEECC
T ss_pred HHHhcCCceEEEeCCc--------EEEHHHHHHHHHHHHHHHHHc--CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecC
Confidence 3478999999998777 999999999999999999987 999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCCCC
Q 004952 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (722)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (722)
|.++.+++.+++++++++++|++............... ............. . .......+............
T Consensus 80 ~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~ 151 (501)
T 3ipl_A 80 TRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDD----IEFAGRDITTNGL-L---DNTMGIQYDTSNETVVPKES 151 (501)
T ss_dssp TTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEETTC----------------------------------------CC
T ss_pred ccCCHHHHHHHHHhcCCCEEEEcccccccccccccccc----ceeeeeecccccc-c---ccccccccccchhhccccCC
Confidence 99999999999999999999998754322111100000 0000000000000 0 00000000000000000000
Q ss_pred CCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcCCE
Q 004952 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGAT 424 (722)
Q Consensus 345 ~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~ 424 (722)
..........+++++||+|||||||.||||+++|+++.+.+.+....++++++|++++..|++|++++..++.+++.|++
T Consensus 152 ~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~ 231 (501)
T 3ipl_A 152 PSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFT 231 (501)
T ss_dssp HHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCE
T ss_pred cccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCce
Confidence 00111234567999999999999999999999999999999888888999999999999999999999889999999999
Q ss_pred EEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCcccccc
Q 004952 425 LALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 504 (722)
Q Consensus 425 lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n~Y 504 (722)
+++.+ ..++..+++.|+++++|++.++|++++.|.+...... .+||.+++|||++++++.+++.+. +++++|.|
T Consensus 232 ~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---~~lr~i~~gG~~l~~~~~~~~~~~--~~~~~~~Y 305 (501)
T 3ipl_A 232 VRIVD-KFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEP---YNLQKILLGGAKLSATMIETALQY--NLPIYNSF 305 (501)
T ss_dssp EEECS-SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSC---TTCCEEEECSSCCCHHHHHHHHHT--TCCEEEEE
T ss_pred EEeCC-CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCc---CcccEEEEeCCCCCHHHHHHHHHh--CCCEeccc
Confidence 99987 4688999999999999999999999999998754332 389999999999999998888763 78999999
Q ss_pred cccccccccccCCcC-CcCccccccccCCCceEEEECCCCCcCCCCCCccceEEEe-----cccCCCccccccccccccc
Q 004952 505 GGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF-----PLYLGASDRLLNADHEEVY 578 (722)
Q Consensus 505 G~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~-----~~y~~~~~~~~~~~~t~~~ 578 (722)
|+||+++.++..... .....+++|+|+++++++|+|++ .|+ +|||+|. .||++ +++.|+.
T Consensus 306 G~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~--~GEl~v~g~~~~~gY~~------~~~~t~~- 371 (501)
T 3ipl_A 306 GMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPN-----KEG--HGELMIKGANVMNGYLY------PTDLTGT- 371 (501)
T ss_dssp EEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCC-----SSC--CEEEEEESTTSCSCCSB------STTCCCS-
T ss_pred cccccccceeecCccccccCCCCCCCCCCCcEEEEecCC-----CCC--ccEEEEeccchhhhhCc------Chhhcch-
Confidence 999998654443322 22355789999999999999976 344 4999993 45554 4555555
Q ss_pred eeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEEEE
Q 004952 579 FRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVI 658 (722)
Q Consensus 579 f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~a 658 (722)
|. .+||+|||+|++++||+++|+||+||+||++|+||+|.|||++|. +||+|.+|+|++.+++..| +.+++
T Consensus 372 ~~-------~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~-~~p~V~~~~vv~~~~~~~g-~~~~a 442 (501)
T 3ipl_A 372 FE-------NGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAK-QFPGISDAVCVGHPDDTWG-QVPKL 442 (501)
T ss_dssp EE-------TTEEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHT-TSTTEEEEEEEEEEETTTE-EEEEE
T ss_pred hc-------CCceecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHH-hCCCccEEEEEEEecccCC-ceEEE
Confidence 42 239999999999999999999999999999999999999999995 9999999999999998887 89999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhhh
Q 004952 659 FVVLKKGFTSQPDKLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKHE 715 (722)
Q Consensus 659 ~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~~ 715 (722)
+++... ..+.++|+++|+++||.||+|. ++++++||+|+||||||++|++...++
T Consensus 443 ~v~~~~--~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~l~~~~~~~ 498 (501)
T 3ipl_A 443 YFVSES--DISKAQLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLYREGHHH 498 (501)
T ss_dssp EEEESS--CCCHHHHHHHHHHHSCGGGSCSEEEECSSCC-------------------
T ss_pred EEEeCC--CCCHHHHHHHHHhhCccccCCCEEEEecccCCCCCCCEeHHHHhhccccc
Confidence 999754 4678999999999999999995 559999999999999999999987654
No 28
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=7.6e-74 Score=651.35 Aligned_cols=482 Identities=19% Similarity=0.201 Sum_probs=296.7
Q ss_pred CCCCCCceEEEEecCC--CCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEe
Q 004952 186 RRKEDNTVAIVWREDR--CDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVS 262 (722)
Q Consensus 186 a~~~pd~~Al~~~~~~--~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vp 262 (722)
++++||++|+++.+.. ......+++||+||+++++++|++|++. + +||+|+|+++|++++++++|||+|+|++++|
T Consensus 30 a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~~~lA~~~~Gav~vp 108 (562)
T 3ite_A 30 AKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAIIVGIMKSGNTYVP 108 (562)
T ss_dssp HHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHHHHHHHHHHTTCEEEE
T ss_pred HHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHHHHHHHHHHhCCEEEe
Confidence 4789999999986521 0112235899999999999999999999 8 7999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHhcccCCC
Q 004952 263 IADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (722)
Q Consensus 263 l~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (722)
++|.++.+++.+++++++++++|+++....... ......++.. ....+.+.......
T Consensus 109 l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~-----------~~~~~~~~~~-----------~~~~~~~~~~~~~~- 165 (562)
T 3ite_A 109 IEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE-----------LPPETKVLDT-----------KNQSFIENLSTQDT- 165 (562)
T ss_dssp CCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC-----------CCTTCEEEET-----------TCHHHHHHHHHSCC-
T ss_pred cCCcCHHHHHHHHHHhcCCCEEEEccccccccc-----------cCccceeecc-----------cchhhhhhcccccc-
Confidence 999999999999999999999999864321110 0111111110 11122232222211
Q ss_pred CCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhh--------hcCCCCCCEEEEecCccccchhHH
Q 004952 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA--------HIDLKVGDVYCWPTNLGWVMGPVI 414 (722)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~--------~~~~~~~d~~l~~~~~~~~~~~~~ 414 (722)
........+++++||+|||||||.||||+++|+++.+.+.+... .+.+...+++++.++++|+.++..
T Consensus 166 ----~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (562)
T 3ite_A 166 ----SDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGE 241 (562)
T ss_dssp ----SCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHH
T ss_pred ----cccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHH
Confidence 11123345788999999999999999999999999887765433 255788999999999999999999
Q ss_pred HHHHhhcCCEEEEecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhh
Q 004952 415 LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSK 494 (722)
Q Consensus 415 ~~~~L~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~ 494 (722)
++.++..|+++++.+....+..+.+.++++++|++.++|++++.+... ..++++||.+++|||++++++.+++...
T Consensus 242 ~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~----~~~~~~lr~~~~gG~~l~~~~~~~~~~~ 317 (562)
T 3ite_A 242 MFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV----PEDAPHLVYLGVGGEKMTPRTQQIWSSS 317 (562)
T ss_dssp HHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC----GGGSTTCCEEEEESSCCCHHHHHHHTTC
T ss_pred HHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC----ccccCceEEEEEecCCCCHHHHHHHhhC
Confidence 999999999999876433456788999999999999999999887433 3457899999999999999998888764
Q ss_pred ccCCcccccccccccccccccCCcCCcCccccccccCCCceEEEECC-CCCcCCCCCCccceEEEe-----cccCCCccc
Q 004952 495 AWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDE-CGVPYPDDQPCVGEVGLF-----PLYLGASDR 568 (722)
Q Consensus 495 ~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~-~~~~~p~G~~giGel~v~-----~~y~~~~~~ 568 (722)
++++++|.||+||+++.++...........++|+|+++++++|+|+ .++++|.|+. |||+|. .||++
T Consensus 318 -~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~--GEl~v~g~~v~~GY~~---- 390 (562)
T 3ite_A 318 -DRVALVNVYGPTEVTIGCSAGRILPDSDTRCIGHPLGDSVAHVLAPGSNEHVKKGMA--GELVIEGSLVANGYLN---- 390 (562)
T ss_dssp -SSCEEEEEECCGGGCSCSEEEECCTTSCTTEEEEECTTCEEEEECTTSSCBCCTTSC--EEEEEESTTSCCEESS----
T ss_pred -CCcEEEEeeccchheeeeeeeeecCCCCCccccccCCCCeEEEEeCCCCCCCCCCCc--eEEEEeccccchhhCC----
Confidence 4789999999999987655544444455678999999999999995 6889999996 999993 45655
Q ss_pred cccccccccceeccccCCCceecccCceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHhccC-CCcceeEEEeec
Q 004952 569 LLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQAD-ESILETAAISVS 647 (722)
Q Consensus 569 ~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~-p~V~~~~vv~~~ 647 (722)
+++.|+..|. +|.+||+|||+|++|+||+|+|+||+|||||++|+||+|.|||++|. +| |.|.+++|++.+
T Consensus 391 --~p~~t~~~~~-----~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~-~~~~~~~~~~v~~~~ 462 (562)
T 3ite_A 391 --RPDAKGFCDI-----NGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIR-SLSPTDIDVVTLLLN 462 (562)
T ss_dssp --CTTCCSEEEE-----TTEEEEEEEEEEEECTTSCEEEEEEC-------------------------------------
T ss_pred --CccccccccC-----CCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHH-hcCCCceeEEEEEec
Confidence 4455554333 36789999999999999999999999999999999999999999996 66 889999999888
Q ss_pred CCCCCceEEEEEEEecCCCCCC-------------HHHHHHHHHHHHHhhcCCC-eeecCCCCCC-CCchhhHHHHHHHH
Q 004952 648 PAGGGPEVLVIFVVLKKGFTSQ-------------PDKLKMIFSKAIQSKLNPL-FKVVPEFPRT-ASNKLLRRVLRDQI 712 (722)
Q Consensus 648 ~~~~g~~~l~a~vv~~~~~~~~-------------~~~l~~~l~~~l~~~~~p~-~~~v~~lP~t-~~GKvdR~~L~~~~ 712 (722)
++..+ +..+++++...+.... .++|+++|+++||.||+|+ ++++++||+| +|||+||++|++++
T Consensus 463 ~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~y~~P~~i~~v~~lP~t~~~GKi~r~~L~~~~ 541 (562)
T 3ite_A 463 HPGTS-KQFLVSFVASSGAAVRGELRWINENYKEINNSLRQACEQTLPAYMVPDFIIPISFIPLRDTSAKTDAKALEHMF 541 (562)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCc-ceEEEEEEecccccccccccccccchhhHHHHHHHHHHhhCCcccCCcEEEEeccCCCCCCCCcchHHHHHHHH
Confidence 87777 5544444443332221 2489999999999999995 5589999998 99999999999998
Q ss_pred hhh
Q 004952 713 KHE 715 (722)
Q Consensus 713 ~~~ 715 (722)
++.
T Consensus 542 ~~~ 544 (562)
T 3ite_A 542 HTL 544 (562)
T ss_dssp ---
T ss_pred hcc
Confidence 754
No 29
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=1.1e-72 Score=646.40 Aligned_cols=487 Identities=15% Similarity=0.128 Sum_probs=392.3
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 004952 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (722)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~ 264 (722)
++++||++|+++.+. +..+++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|++
T Consensus 21 a~~~p~~~a~~~~~~----~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~ 96 (590)
T 3kxw_A 21 ALHSPNKKSCTFLNK----ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIY 96 (590)
T ss_dssp HHHCTTSEEEEEEET----TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHhCCCCeEEEEEcC----CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHHhCcEEEEec
Confidence 478999999998642 1224999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCC---HHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCC--cEEEEcCCCCCCCCCCCCCCCCHHHHhccc
Q 004952 265 DSFA---AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSV 339 (722)
Q Consensus 265 p~~~---~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (722)
|.++ .+++.++++++++++++++.......... .....+. ....+. .+++....
T Consensus 97 ~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~-----~~~~~~~~~~~~~~~----------------~~~~~~~~ 155 (590)
T 3kxw_A 97 PPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTAD-----ELNTNPKFLKIPAIA----------------LESIELNR 155 (590)
T ss_dssp CCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC----------CCEETTEEEEE----------------GGGCCGGG
T ss_pred CCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHh-----hhhhcccccccceee----------------chhccccc
Confidence 9984 57899999999999999987542110000 0000000 001110 11110000
Q ss_pred CCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchhHH-HHHH
Q 004952 340 DYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSS 418 (722)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~-~~~~ 418 (722)
..........+++++||+|||||||.||||+++|+++++.+.+....++++++|++++++|++|+++++. ++.+
T Consensus 156 -----~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~ 230 (590)
T 3kxw_A 156 -----SSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCILTP 230 (590)
T ss_dssp -----GGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHTTTHHH
T ss_pred -----cccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhhHHHHHHH
Confidence 0111223456799999999999999999999999999999999888999999999999999999999976 8899
Q ss_pred hhcCCEEEEecCCC---ChhhHHHHHHHhCCcEEechhHHHHHHHhc---CCCCCCCccceeEEEeecCCCCcchHHHHH
Q 004952 419 FLNGATLALYQGSP---LERSFGKFVQDAGVTVLGTVPSLVKAWRNT---NCLEGLDWTKIRSFASTGETSNVDDDLWLS 492 (722)
Q Consensus 419 L~~G~~lv~~~~~~---~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~---~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~ 492 (722)
++.|+++++.+... ++..+++.|+++++|++.++|+++..+.+. ......++++||.+++|||++++++.+++.
T Consensus 231 l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~ 310 (590)
T 3kxw_A 231 IYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFY 310 (590)
T ss_dssp HHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCHHHHHHHH
T ss_pred HhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCHHHHHHHH
Confidence 99999999986422 678899999999999999999999998775 233456789999999999999999999888
Q ss_pred hhcc-----CCcccccccccccccccccCCcC--------------------------CcCccccccccCCCceEEEECC
Q 004952 493 SKAW-----YNAIIESCGGTELSSAYIQGSLL--------------------------QPQAFGAFSTATMTAGLVILDE 541 (722)
Q Consensus 493 ~~~~-----~~~l~n~YG~TE~~~~~~~~~~~--------------------------~~~~~~~iG~p~~~~~~~vld~ 541 (722)
+.++ +.+++|.||+||++++++..... ......++|+|+++ ++|+|+
T Consensus 311 ~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~ 388 (590)
T 3kxw_A 311 QAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDP 388 (590)
T ss_dssp HHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECT
T ss_pred HHHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcC
Confidence 7753 45799999999999765543211 11234689999998 888997
Q ss_pred C-CCcCCCCCCccceEEEe-----cccCCCccccccccccccceeccccCC--CceecccCceEEEecCCcEEEEeecCC
Q 004952 542 C-GVPYPDDQPCVGEVGLF-----PLYLGASDRLLNADHEEVYFRGMPMYK--GMCLRRHGDIIKRTVGGYIIVQGRADD 613 (722)
Q Consensus 542 ~-~~~~p~G~~giGel~v~-----~~y~~~~~~~~~~~~t~~~f~~~p~~~--g~r~yrTGDl~~~~~dG~l~~~GR~dd 613 (722)
+ ++++|.|+. |||+|. .||++ +++.|++.|..++... |.+||+|||+|+++ ||.|+|+||+||
T Consensus 389 ~~~~~~~~g~~--GEl~v~g~~v~~GY~~------~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd 459 (590)
T 3kxw_A 389 DTLIPCDFDQV--GEIWVQSNSVAKGYWN------QPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKD 459 (590)
T ss_dssp TTCCBCCTTBC--EEEEEESTTSCCCBTT------CHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSC
T ss_pred CCCcCCCCCCE--EEEEEeCCcccccccC------ChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccc
Confidence 6 999999995 999993 45554 6778888998765432 55699999999999 999999999999
Q ss_pred eeecCceeechHHHHHHHhccCCCcc--eeEEEeecCCCCCceEEEEEEEecCCC--CCCHHHHHHHHHHHHHh-hcCCC
Q 004952 614 TMNLGGIKTSSVEIERVCDQADESIL--ETAAISVSPAGGGPEVLVIFVVLKKGF--TSQPDKLKMIFSKAIQS-KLNPL 688 (722)
Q Consensus 614 ~ik~~G~ri~~~eIE~~l~~~~p~V~--~~~vv~~~~~~~g~~~l~a~vv~~~~~--~~~~~~l~~~l~~~l~~-~~~p~ 688 (722)
|||++|+||+|.|||++|+..||+|. +|+|++++++. + +.+++++++.++. ..+.++++++|+++|+. +++|.
T Consensus 460 ~Ik~~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~~-~-~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~ 537 (590)
T 3kxw_A 460 LIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEH-E-YKLTVMCEVKNRFMDDVAQDNLFNEIFELVYENHQLEV 537 (590)
T ss_dssp HHHHHHHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEETT-E-EEEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred eEEECCEecCHHHHHHHHHhcCccccCccEEEEEecCCC-C-ceEEEEEEeccccccchhHHHHHHHHHHHHHHHcCCce
Confidence 99999999999999999944899998 89999998875 4 7899999988753 34567899999999996 77874
Q ss_pred -e-e--ecCCCCCCCCchhhHHHHHHHHhhh
Q 004952 689 -F-K--VVPEFPRTASNKLLRRVLRDQIKHE 715 (722)
Q Consensus 689 -~-~--~v~~lP~t~~GKvdR~~L~~~~~~~ 715 (722)
. . .+++||+|+||||||++|++++.+.
T Consensus 538 ~~i~~v~~~~lP~t~sGKi~R~~L~~~~~~~ 568 (590)
T 3kxw_A 538 HTIVLIPLKAMPHTTSGKIRRNFCRKHLLDK 568 (590)
T ss_dssp CEEEEEETTCSCCCSCHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCccCcCCCcHHHHHHHHHHHHcC
Confidence 2 2 4589999999999999999998654
No 30
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=2.3e-70 Score=625.47 Aligned_cols=482 Identities=17% Similarity=0.174 Sum_probs=381.9
Q ss_pred cCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 004952 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (722)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl 263 (722)
+++++|+.+++.... +..+++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 30 ~a~~~p~~~~~~~~~-----~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl 104 (576)
T 3gqw_A 30 AALSSAGMNFYDRRC-----QLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFACQYAGLVAVPL 104 (576)
T ss_dssp HTTSSCEEEEECTTS-----CEEEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred HhhCCCCeEEeCCCC-----CceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCeEeec
Confidence 346889988875322 1224899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCC-------HHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCCcEEEEcCCCCCCCCCCCCCCCCHHHHh
Q 004952 264 ADSFA-------AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFL 336 (722)
Q Consensus 264 ~p~~~-------~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (722)
++.++ .+++.+++++++++++|+++... +.........+...+.. . ...
T Consensus 105 ~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~------~~~~~~~~~~~~~~~~~-----------------~-~~~ 160 (576)
T 3gqw_A 105 AIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWL------PLVNAATHDNPELHVLS-----------------H-AWF 160 (576)
T ss_dssp CCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGH------HHHHHHGGGCTTCEEEE-----------------H-HHH
T ss_pred CCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHH------HHHHHhhccCCcceecc-----------------h-hhh
Confidence 99999 89999999999999999987532 22222222222111111 0 011
Q ss_pred cccCCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhh-cCCCCCCEEEEecCccccchhHH-
Q 004952 337 SSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH-IDLKVGDVYCWPTNLGWVMGPVI- 414 (722)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~-~~~~~~d~~l~~~~~~~~~~~~~- 414 (722)
..... .........+++++||+|||||||.||||+++|+++++.+.+.... ++++++|++++.+|++|+++++.
T Consensus 161 ~~~~~----~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~ 236 (576)
T 3gqw_A 161 KALPE----ADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGIKLRPGDRCVSWLPFYHDMGLVGF 236 (576)
T ss_dssp HTSCC----CCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTSCCCTTCCEEECCCTTSHHHHHHH
T ss_pred hcccc----cccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhcccCCCCcceEEEcCCccccccHHHH
Confidence 11111 1112233467999999999999999999999999999888776554 78999999999999999999865
Q ss_pred HHHHhhcCCEEEEecC---CCChhhHHHHHHHhCCcEEechhHHHHHHHhcCC---CCCCCccceeEEEeecCCCCcchH
Q 004952 415 LFSSFLNGATLALYQG---SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC---LEGLDWTKIRSFASTGETSNVDDD 488 (722)
Q Consensus 415 ~~~~L~~G~~lv~~~~---~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~---~~~~~l~~Lr~i~~~Ge~l~~~~~ 488 (722)
++.++..|+++++.+. ..++..+++.|+++++|++.++|+++..+.+... ....++++||.+++|||++++++.
T Consensus 237 ~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~ 316 (576)
T 3gqw_A 237 LLTPVATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELDLSCWRVAGIGAEPISAEQL 316 (576)
T ss_dssp THHHHHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHHHTTCCCTTCCEEEECSSCCCHHHH
T ss_pred HHHHHhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccccccCChhhhHhhhccCccCCHHHH
Confidence 6778999999988763 1367889999999999999999999988866432 245568999999999999999999
Q ss_pred HHHHhhcc-----CCcccccccccccccccccCCcCCc---------------------------CccccccccCCCceE
Q 004952 489 LWLSSKAW-----YNAIIESCGGTELSSAYIQGSLLQP---------------------------QAFGAFSTATMTAGL 536 (722)
Q Consensus 489 ~~~~~~~~-----~~~l~n~YG~TE~~~~~~~~~~~~~---------------------------~~~~~iG~p~~~~~~ 536 (722)
+++.+.++ +++++|.||+||++++++....... ....++|+|++++++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~~ 396 (576)
T 3gqw_A 317 HQFAECFRQVNFDNKTFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGI 396 (576)
T ss_dssp HHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCEE
T ss_pred HHHHHHHhhcCCCcccccccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCCeE
Confidence 98887764 6789999999999976554322110 112389999999999
Q ss_pred EEECCCCCcCCCCCCccceEEEe-----cccCCCccccccccccccceeccccCCCceecccCceEEEecCCcEEEEeec
Q 004952 537 VILDECGVPYPDDQPCVGEVGLF-----PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRA 611 (722)
Q Consensus 537 ~vld~~~~~~p~G~~giGel~v~-----~~y~~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~dG~l~~~GR~ 611 (722)
+|+|++|+++|.|++ |||+|. .||++ +++.+++.|. .+||+|||+|++ +||+|+|+||+
T Consensus 397 ~i~d~~g~~~~~g~~--GEl~v~g~~~~~gY~~------~~~~~~~~~~-------~g~~~TGDl~~~-~dG~l~~~GR~ 460 (576)
T 3gqw_A 397 EIRNEAGMPVAERVV--GHICISGPSLMSGYFG------DQVSQDEIAA-------TGWLDTGDLGYL-LDGYLYVTGRI 460 (576)
T ss_dssp EEECTTSCBCCTTBC--EEEEEESTTSCCCBTT------CHHHHHHHHH-------HSCEEEEEEEEE-ETTEEEEEEET
T ss_pred EEECCCCCCCCCCCe--EEEEEeCccccccccC------CccccccccC-------CCeeeccceEEE-ECCEEEEEecC
Confidence 999999999999995 999993 45554 3444444432 249999999999 79999999999
Q ss_pred CCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHH-HhhcCCC-e
Q 004952 612 DDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAI-QSKLNPL-F 689 (722)
Q Consensus 612 dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~l-~~~~~p~-~ 689 (722)
|||||++|+||+|.|||++|. +||+|.+++|++..++.. .++++++...+.....+++++++++++ +.+++|. +
T Consensus 461 dd~ik~~G~~v~p~eIE~~l~-~~p~V~~~~vv~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~i 536 (576)
T 3gqw_A 461 KDLIIIRGRNIWPQDIEYIAE-QEPEIHSGDAIAFVTAQE---KIILQIQCRISDEERRGQLIHALAARIQSEFGVTAAI 536 (576)
T ss_dssp TTCEEETTEEECHHHHHHHHT-TSSSCCTTSEEEEECTTS---CEEEEEECCCCCHHHHHHHHHHHHHHHHHHHSCCEEE
T ss_pred cceEEECCEEECHHHHHHHHH-hCcccccccEEEEEcCCc---cEEEEEEEecCchhHHHHHHHHHHHHHHHHhCCceeE
Confidence 999999999999999999995 999999999998877643 355555554433334468899999999 7899995 4
Q ss_pred eecC--CCCCCCCchhhHHHHHHHHhhhhhhc
Q 004952 690 KVVP--EFPRTASNKLLRRVLRDQIKHELSVR 719 (722)
Q Consensus 690 ~~v~--~lP~t~~GKvdR~~L~~~~~~~~~~~ 719 (722)
.+++ +||+|+|||+||++|+++++++....
T Consensus 537 ~~v~~~~lP~t~~GKi~r~~l~~~~~~~~~~~ 568 (576)
T 3gqw_A 537 DLLPPHSIPRTSSGKPARAEAKKRYQKAYAAS 568 (576)
T ss_dssp EEECSSCSCBCTTSSBCHHHHHHHHHHHHTCC
T ss_pred EEECCCCcCcCCCccchHHHHHHHHHHHhhhc
Confidence 4565 99999999999999999998876553
No 31
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=1.8e-57 Score=506.97 Aligned_cols=387 Identities=16% Similarity=0.133 Sum_probs=297.8
Q ss_pred cCCCCCCceEEEEecCC-CCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEe
Q 004952 185 HRRKEDNTVAIVWREDR-CDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVS 262 (722)
Q Consensus 185 ~a~~~pd~~Al~~~~~~-~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vp 262 (722)
+++++||++|+++.+.. ...+..+++||+||+++++++|++|++. + +||+|+|+++|++++++++|||+++|+++||
T Consensus 33 ~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vp 111 (480)
T 3t5a_A 33 CARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFLGALQAGRIAVP 111 (480)
T ss_dssp HHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHHHHHHTTCEEEE
T ss_pred HHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHHHHHHhCcEEEe
Confidence 34789999999987621 1122335999999999999999999999 8 9999999999999999999999999999999
Q ss_pred cCC---CCCHHHHHHHHHhcCceEEEeccchhcCCccccchHHHhhcCCC--cEEEEcCCCCCCCCCCCCCCCCHHHHhc
Q 004952 263 IAD---SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLS 337 (722)
Q Consensus 263 l~p---~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (722)
+++ .++.+++.+++++++++++|++.... +.........+. ...++. ++....
T Consensus 112 l~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~----------------~~~~~~ 169 (480)
T 3t5a_A 112 LSVPQGGVTDERSDSVLSDSSPVAILTTSSAV------DDVVQHVARRPGESPPSIIE----------------VDLLDL 169 (480)
T ss_dssp ECSCCSCTTCCHHHHHHHHHCCSEEEECTTTH------HHHHHTCC------CCEEEE----------------GGGSCT
T ss_pred eCCCCccchHHHHHHHHHhCCCCEEEeChhHH------HHHHHHHhccccccccceeE----------------eccccc
Confidence 999 88899999999999999999997532 111111111110 001110 000000
Q ss_pred ccCCCCCCCCCCCccCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCC------CCEEEEecCccccch
Q 004952 338 SVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKV------GDVYCWPTNLGWVMG 411 (722)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~------~d~~l~~~~~~~~~~ 411 (722)
. ...........+++++||+|||||||.||||+++|+++++.+.+....+.+.+ +|++++.+|++|+++
T Consensus 170 ~-----~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 244 (480)
T 3t5a_A 170 D-----APNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMG 244 (480)
T ss_dssp T-----CC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCCTTSTTH
T ss_pred c-----cccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCCCcCccH
Confidence 0 01112233456789999999999999999999999999999888878888877 999999999999999
Q ss_pred h-HHHHHHhhcCCEEEEecCC---CChhhHHHHHHHhCCcEEechhHHHHHHHhc----CCCCCCCccceeEEEeecCCC
Q 004952 412 P-VILFSSFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNT----NCLEGLDWTKIRSFASTGETS 483 (722)
Q Consensus 412 ~-~~~~~~L~~G~~lv~~~~~---~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~----~~~~~~~l~~Lr~i~~~Ge~l 483 (722)
+ +.++.+|+.|+++++.+.. .++..+++.|+++++| +.++|+++..++.. ......++++||.+++|||++
T Consensus 245 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~gG~~l 323 (480)
T 3t5a_A 245 LVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILTILSGSERV 323 (480)
T ss_dssp HHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEEECCTTC
T ss_pred HHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhheeeecCCcC
Confidence 6 5789999999999998643 3778999999999999 88899988887753 233456789999999999999
Q ss_pred CcchHHHHHhhc-----cCCcccccccccccccccccCCcCC------------------------cCccccccccCCCc
Q 004952 484 NVDDDLWLSSKA-----WYNAIIESCGGTELSSAYIQGSLLQ------------------------PQAFGAFSTATMTA 534 (722)
Q Consensus 484 ~~~~~~~~~~~~-----~~~~l~n~YG~TE~~~~~~~~~~~~------------------------~~~~~~iG~p~~~~ 534 (722)
++++.+++.+.+ ++++++|.||+||++++++...... .....++|+|++ +
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~ 402 (480)
T 3t5a_A 324 QAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-P 402 (480)
T ss_dssp CHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-S
T ss_pred CHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-C
Confidence 999999998876 3457999999999997665544321 123468999999 9
Q ss_pred eEEEECCC-CCcCCCCCCccceEEE-----ecccCCCccccccccccccceecccc-----CCCceecccCceEEEecCC
Q 004952 535 GLVILDEC-GVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPM-----YKGMCLRRHGDIIKRTVGG 603 (722)
Q Consensus 535 ~~~vld~~-~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~t~~~f~~~p~-----~~g~r~yrTGDl~~~~~dG 603 (722)
+++|+|++ |+++|.|++ |||+| +.||++ +++.|++.|..++. .++.+||||||+|+++ ||
T Consensus 403 ~~~ivd~~~g~~~~~g~~--GEl~v~g~~v~~GY~~------~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG 473 (480)
T 3t5a_A 403 IVRIVDSDTCIECPDGTV--GEIWVHGDNVANGYWQ------KPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DG 473 (480)
T ss_dssp EEEEEETTTTEECCTTBC--EEEEEESTTSCCCBTT------BHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TT
T ss_pred EEEEEcCCCCcCCCCCCE--EEEEEeCCcccccccc------CcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CC
Confidence 99999976 899999995 99999 345554 67788888864332 2356799999999997 99
Q ss_pred cEEEEee
Q 004952 604 YIIVQGR 610 (722)
Q Consensus 604 ~l~~~GR 610 (722)
+|+|+||
T Consensus 474 ~l~~~GR 480 (480)
T 3t5a_A 474 KMFIIGR 480 (480)
T ss_dssp EEEECC-
T ss_pred EEEEeCC
Confidence 9999998
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=5.6e-56 Score=473.41 Aligned_cols=316 Identities=17% Similarity=0.131 Sum_probs=267.0
Q ss_pred CCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcCCEEEEecCCCCh
Q 004952 355 VDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLE 434 (722)
Q Consensus 355 ~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lv~~~~~~~~ 434 (722)
.+++|||+|||||||.||||++||+++++.+.+....++++++|++++.+|++|++++..++.+++.|+++++.+...+
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~~~- 114 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPTAN- 114 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCCSC-
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcccc-
Confidence 3789999999999999999999999999999988889999999999999999999999999999999999999875433
Q ss_pred hhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCcchHHHHHhhccCCcccccccccccccccc
Q 004952 435 RSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYI 514 (722)
Q Consensus 435 ~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~ 514 (722)
+++.|+++++|++.++|++++.|++... ...++++||.+++|||++++++.+++.+. +++++|.||+||++..++
T Consensus 115 --~~~~i~~~~~t~~~~~P~~l~~ll~~~~-~~~~l~~lr~v~~gG~~l~~~~~~~~~~~--~~~~~~~YG~TEt~~~~~ 189 (358)
T 4gs5_A 115 --PLAGLDHADFDFVAMVPMQLQSILENSA-TSGQVDRLGKVLLGGAPVNHALAMQISDL--AMPVYQSYGMTETVSHVA 189 (358)
T ss_dssp --TTTTCSSCCCSEEEECHHHHHHHHHCTT-TGGGGGGGCSEEECSSCCCHHHHHHHHTC--SSCEEEEEECGGGSSEEE
T ss_pred --HHHHHHHhCCeEEEcChHHHHHhhcccc-ccccCCcceEEEEcccCCCchheeccccc--CceEEeccccccccceee
Confidence 3567889999999999999999988754 34568999999999999999999988764 689999999999987554
Q ss_pred cCCcCCcCccccccccCCCceEEEECCCCCcCCCCCCccceEEEecccCCCccccccccccccceeccccCCCceecccC
Q 004952 515 QGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHG 594 (722)
Q Consensus 515 ~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~~~y~~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTG 594 (722)
... ......+.+|.|.||+.+.+.+ .||+++...+. ..+||+||
T Consensus 190 ~~~-~~~~~~g~~~~~~pgv~~~~~~------------~Gel~~~g~~~-----------------------~~g~~~TG 233 (358)
T 4gs5_A 190 LKA-LNGPEASELYVFLPGIQYGVDE------------RGCLHISGAVT-----------------------NGQTVQTN 233 (358)
T ss_dssp EEE-CSSTTCCSCEEECTTCEEEECT------------TSEEEEESGGG-----------------------TTCCEEEE
T ss_pred ccc-ccccccceeeccCCCeEEEecC------------cCceEEecccc-----------------------cCcceecC
Confidence 432 2334557889999999887633 28888743221 12399999
Q ss_pred ceEEEecCCcEEEEeecCCeeecCceeechHHHHHHHh--ccCCCcceeEEE-eecCCCCCceEEEEEEEecCCCCCCHH
Q 004952 595 DIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCD--QADESILETAAI-SVSPAGGGPEVLVIFVVLKKGFTSQPD 671 (722)
Q Consensus 595 Dl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~--~~~p~V~~~~vv-~~~~~~~g~~~l~a~vv~~~~~~~~~~ 671 (722)
|+|++|+|| ++|+||+||+||++|+||+|.|||++|. ..||+|.+|+|+ +.+|+..| +.++|+|+...+ ....+
T Consensus 234 Dlg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~g-e~~~a~v~~~~~-~~~~~ 310 (358)
T 4gs5_A 234 DLVEIHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLG-QKLVLVIENAMP-EALTE 310 (358)
T ss_dssp EEEEECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTE-EEEEEEEESCCC-HHHHH
T ss_pred CccccccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCC-EEEEEEEECCCC-CcCHH
Confidence 999999988 7788999999999999999999998763 268999999887 66777777 889999886653 33457
Q ss_pred HHHHHHHHHHHhhcCCC-eeecCCCCCCCCchhhHHHHHHHHhhh
Q 004952 672 KLKMIFSKAIQSKLNPL-FKVVPEFPRTASNKLLRRVLRDQIKHE 715 (722)
Q Consensus 672 ~l~~~l~~~l~~~~~p~-~~~v~~lP~t~~GKvdR~~L~~~~~~~ 715 (722)
+|+++|+++||.||+|+ ++++++||+|+||||||++|++.+++.
T Consensus 311 ~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~l~e~ 355 (358)
T 4gs5_A 311 RLTAEIRSRVSTYENPKHIYFAKAFAKTQTDKIDKRATFQKLSDS 355 (358)
T ss_dssp HHHHHHHHHSCGGGSCSCEEEESSCCBCTTSCBCHHHHHHHTC--
T ss_pred HHHHHHHhhCCCCCCceEEEEECCcCCCCCCChhHHHHHHHhhhh
Confidence 89999999999999995 558999999999999999999988764
No 33
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=2.9e-50 Score=443.58 Aligned_cols=328 Identities=18% Similarity=0.150 Sum_probs=265.9
Q ss_pred cCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhh---hhcCCCCCCEEEEecCcc-ccchhHHHHHHhhcCCEEEE
Q 004952 352 YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNLG-WVMGPVILFSSFLNGATLAL 427 (722)
Q Consensus 352 ~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~---~~~~~~~~d~~l~~~~~~-~~~~~~~~~~~L~~G~~lv~ 427 (722)
..++++++|++|||||||.||||+++|+++.+...... ..++++++|++++..+++ |..++..++.++..|+++++
T Consensus 88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP 167 (443)
T ss_dssp SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence 34678999999999999999999999999877654433 367899999999999985 55666678899999999998
Q ss_pred ecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCC--ccceeEEEeecCCCCcchHHHHHhhccCCccccccc
Q 004952 428 YQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLD--WTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCG 505 (722)
Q Consensus 428 ~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~--l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG 505 (722)
.+. .++..+++.|+++++|++.++|+++..|++.......+ +++||.+++|||++++++.+++.+.+ +++++|.||
T Consensus 168 ~~~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG 245 (443)
T 2y4o_A 168 MSG-GQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRV-GIDALDIYG 245 (443)
T ss_dssp CCS-CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TCEEEEEEE
T ss_pred CCC-CCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHh-CcCEEeccC
Confidence 764 47889999999999999999999999998753322222 58999999999999999999988776 689999999
Q ss_pred ccccccc-cccCCcCCcCccccccccCCCceEEEECC-CCCcCCCCCCccceEEEecccCCCccccccccccccceeccc
Q 004952 506 GTELSSA-YIQGSLLQPQAFGAFSTATMTAGLVILDE-CGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMP 583 (722)
Q Consensus 506 ~TE~~~~-~~~~~~~~~~~~~~iG~p~~~~~~~vld~-~~~~~p~G~~giGel~v~~~y~~~~~~~~~~~~t~~~f~~~p 583 (722)
+||+++. +...... .....+.|.+++.++|+|+ +|+++|.|+. |||+|... +++.| |
T Consensus 246 ~TE~~g~~~~~~~~~---~~~g~~~~~~~~~~~i~d~~~g~~~~~G~~--Gel~v~~~-------------t~~~~---p 304 (443)
T 2y4o_A 246 LSEVMGPGVACECVE---TKDGPVIWEDHFYPEIIDPVTGEVLPDGSQ--GELVFTSL-------------TKEAM---P 304 (443)
T ss_dssp ETTTTEEEEEEECTT---TCCSEEECTTTEEEEEECTTTCCBCCTTCC--EEEEEEES-------------SCSSS---C
T ss_pred chhhcCCeEEeccCC---CCCceEEccCCeEEEEEcCCCCCCCCCCCc--eEEEEeCC-------------CcccC---h
Confidence 9998432 2221111 1112455778999999994 6999999995 99999641 12233 1
Q ss_pred cCCCceecccCceEEEecC-CcE-----EEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEEE
Q 004952 584 MYKGMCLRRHGDIIKRTVG-GYI-----IVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLV 657 (722)
Q Consensus 584 ~~~g~r~yrTGDl~~~~~d-G~l-----~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~ 657 (722)
..||+|||+|++++| |++ +|+||+||+||++|++|+|.|||++|. +||+|.+++|++++++..+ +.++
T Consensus 305 ----~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~-~~p~V~~~~vv~~~~~~~~-~~~~ 378 (443)
T 2y4o_A 305 ----VIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVV-ALPLLSGQFQITLSRDGHM-DRLD 378 (443)
T ss_dssp ----CSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHH-TSTTEEEEEEEEEEEETTE-EEEE
T ss_pred ----hheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHH-hCcCcCccEEEEEecCCCC-ceEE
Confidence 138999999999999 997 899999999999999999999999995 9999999999998876666 8899
Q ss_pred EEEEecC--CC---CCCHHHHHHHHHHHHHhhc-CCCe-eec--CCCCCCCCchhhHHHH
Q 004952 658 IFVVLKK--GF---TSQPDKLKMIFSKAIQSKL-NPLF-KVV--PEFPRTASNKLLRRVL 708 (722)
Q Consensus 658 a~vv~~~--~~---~~~~~~l~~~l~~~l~~~~-~p~~-~~v--~~lP~t~~GKvdR~~L 708 (722)
++|++.+ +. ..+.++++++|+++|++++ +|.. .++ ++||+|+|||++|+..
T Consensus 379 a~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~~ 438 (443)
T 2y4o_A 379 LAVELRSEAAASVTDGERAALARELQHRIKTMVGVSSGVTVLAAGGIPATATGKARRVID 438 (443)
T ss_dssp EEEEECHHHHTTCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTCSCCCTTSCCCSEEE
T ss_pred EEEEECCcccccchhhHHHHHHHHHHHHHHHHhCCceEEEEeCCCcccCccCCcceEEEe
Confidence 9999875 32 2334789999999999986 7843 355 6999999999999753
No 34
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=7.3e-50 Score=439.47 Aligned_cols=324 Identities=19% Similarity=0.225 Sum_probs=261.6
Q ss_pred cCCC-CCeEEEEcCCCCCCCCceEEeCChHHHHHHHHh---hhhcCCCCCCEEEEecCccccchh-HHHHHHhhcCCEEE
Q 004952 352 YNPV-DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG---WAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLA 426 (722)
Q Consensus 352 ~~~~-~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~---~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~~G~~lv 426 (722)
..++ ++++|++|||||||.||||+++|+++.+...+. ...+++.++|++++..|++|..+. ..++.++..|++++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~ 160 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTV 160 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEE
Confidence 3455 899999999999999999999999997766554 334689999999999998755554 56788999999999
Q ss_pred EecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCC--CccceeEEEeecCCCCcchHHHHHhhccCCcccccc
Q 004952 427 LYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGL--DWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 504 (722)
Q Consensus 427 ~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~--~l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n~Y 504 (722)
+.+ ..++..+++.|+++++|++.++|+++..|++....... ++++||.+++|||++++++.+++.+.+ +++++|.|
T Consensus 161 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~Y 238 (436)
T 3qov_A 161 PAA-AGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERML-NVKAYNSF 238 (436)
T ss_dssp CCC-SCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEE
T ss_pred eCC-CCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHh-CccEEecC
Confidence 876 35788999999999999999999999999876433333 378999999999999999999998876 78999999
Q ss_pred cccccccccccCCcCCcCccccccccCCCceEEEEC-CCCCcCCCCCCccceEEEecccCCCccccccccccccceeccc
Q 004952 505 GGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMP 583 (722)
Q Consensus 505 G~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~~p~G~~giGel~v~~~y~~~~~~~~~~~~t~~~f~~~p 583 (722)
|+||+++.++.... ......|.|.+++.++|+| ++|+++|.|+. |||+|... ++..| |
T Consensus 239 G~TE~~~~~~~~~~---~~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~--Gel~v~~~-------------~~~~~---~ 297 (436)
T 3qov_A 239 GMTEMNGPGVAFEC---QEQNGMHFWEDCYLVEIIDPETGEPVPEGEI--GELVLTTL-------------DREMM---P 297 (436)
T ss_dssp EEGGGTEEEEEEEC---TTCSSEEECTTTEEEEEECTTTCSBCSTTCC--EEEEEEES-------------SCCSS---C
T ss_pred cchhhcCCeeEEec---CCCCeeEEccCceEEEEEECCCCCCCCCCCc--eEEEEecc-------------CcCCc---e
Confidence 99999643222111 1122367788899999999 78999999995 99999541 11222 1
Q ss_pred cCCCceecccCceEEEecCC------c---EEEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCce
Q 004952 584 MYKGMCLRRHGDIIKRTVGG------Y---IIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPE 654 (722)
Q Consensus 584 ~~~g~r~yrTGDl~~~~~dG------~---l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~ 654 (722)
..||+|||+|+++++| + ++|+||+||+||++|+||+|.|||++|. +||+|.+++|++.+++..+ +
T Consensus 298 ----~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~-~~p~v~~~~vv~~~~~~~~-~ 371 (436)
T 3qov_A 298 ----LIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILV-QFPELGSNYLITLETVNNQ-D 371 (436)
T ss_dssp ----CCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHT-TCTTEEEEEEEEEEEETTE-E
T ss_pred ----EEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHH-hCcCcCCcEEEEEEcCCCC-c
Confidence 1289999999999998 5 6999999999999999999999999995 9999999999999887766 8
Q ss_pred EEEEEEEecCCCCCC----HHHHHHHHHHHHHhh-cCCC-eeecC--CCCCCCCchhhHH
Q 004952 655 VLVIFVVLKKGFTSQ----PDKLKMIFSKAIQSK-LNPL-FKVVP--EFPRTASNKLLRR 706 (722)
Q Consensus 655 ~l~a~vv~~~~~~~~----~~~l~~~l~~~l~~~-~~p~-~~~v~--~lP~t~~GKvdR~ 706 (722)
.++++|+++ +...+ .++++++|+++|+++ ++|. +.+++ +||+|+ ||++|.
T Consensus 372 ~l~a~v~~~-~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~-GKi~R~ 429 (436)
T 3qov_A 372 EMIVEVELS-DLSTDNYIELEKIRRDIIRQLKDEILVTPKVKLVKKGSLPQSE-GKAVRV 429 (436)
T ss_dssp EEEEEEEEC-TTCCCCHHHHHHHHHHHHHHHHHHHSSCCEEEEECTTCCC--------CE
T ss_pred EEEEEEEEc-CccccchhhHHHHHHHHHHHHHHhcCCceEEEEeCCCcccCcC-CcceEE
Confidence 999999998 55444 578999999999999 8885 44777 999999 999985
No 35
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=1.5e-48 Score=429.07 Aligned_cols=326 Identities=19% Similarity=0.160 Sum_probs=265.3
Q ss_pred cCCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhh---hhcCCCCCCEEEEecCc-cccchhHHHHHHhhcCCEEEE
Q 004952 352 YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNL-GWVMGPVILFSSFLNGATLAL 427 (722)
Q Consensus 352 ~~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~---~~~~~~~~d~~l~~~~~-~~~~~~~~~~~~L~~G~~lv~ 427 (722)
..+++++++++|||||||.||||+++|+++.+...+.. ..++++++|++++..|+ .|..++..++.++..|+++++
T Consensus 86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 34678999999999999999999999999877654332 35788999999999998 466666678899999999998
Q ss_pred ecCCCChhhHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCC--ccceeEEEeecCCCCcchHHHHHhhccCCccccccc
Q 004952 428 YQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLD--WTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCG 505 (722)
Q Consensus 428 ~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~--l~~Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG 505 (722)
.+. .++..+++.|+++++|++.++|+++..|++.......+ +++||.+++|||++++++.+++.+.+ +++++|.||
T Consensus 166 ~~~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG 243 (437)
T 2y27_A 166 FGG-GQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRM-GIDAVDIYG 243 (437)
T ss_dssp CCS-CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEEE
T ss_pred CCC-CCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHH-CcCEEecCC
Confidence 763 47889999999999999999999999998753322222 47999999999999999999888766 689999999
Q ss_pred ccccccc-cccCCcCCcCccccccccCCCceEEEECC-CCCcCCCCCCccceEEEecccCCCccccccccccccceeccc
Q 004952 506 GTELSSA-YIQGSLLQPQAFGAFSTATMTAGLVILDE-CGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMP 583 (722)
Q Consensus 506 ~TE~~~~-~~~~~~~~~~~~~~iG~p~~~~~~~vld~-~~~~~p~G~~giGel~v~~~y~~~~~~~~~~~~t~~~f~~~p 583 (722)
+||+++. +....... ....+.|.+++.++|+|+ +|+++|.|+. |||+|... +++.| |
T Consensus 244 ~TE~~g~~~~~~~~~~---~~g~~~~~~~~~~~i~d~~~g~~~~~g~~--Gel~v~~~-------------t~~~~---~ 302 (437)
T 2y27_A 244 LSEVMGPGVASECVET---KDGPTIWEDHFYPEIIDPETGEVLPDGEL--GELVFTSL-------------TKEAL---P 302 (437)
T ss_dssp ETTTTEEEEEECCTTT---CSSCEECTTTEEEEEECTTTCCBCCTTCC--EEEEEEES-------------SCSSS---C
T ss_pred chhhcCCeeEEecCCC---CCceeEccCceEEEEEcCCCCCCCCCCCc--cEEEEecC-------------CcCCc---h
Confidence 9998432 22222111 112566778999999995 6999999995 99998641 22233 1
Q ss_pred cCCCceecccCceEEEec-CCcE-----EEEeecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEEE
Q 004952 584 MYKGMCLRRHGDIIKRTV-GGYI-----IVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLV 657 (722)
Q Consensus 584 ~~~g~r~yrTGDl~~~~~-dG~l-----~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~ 657 (722)
..||+|||+|++++ ||++ +|+||+||+||++|++|+|.|||++|. +||+|.+++|++++++..+ +.++
T Consensus 303 ----~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~-~~p~V~~~~vv~~~~~~~~-~~l~ 376 (437)
T 2y27_A 303 ----IIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLL-KQRALAPHYQIVLTKEGPL-DVLT 376 (437)
T ss_dssp ----CCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHT-TCTTBCSCCEEEEEEETTE-EEEE
T ss_pred ----hheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHH-hCcCcCccEEEEEeecCCC-ceEE
Confidence 12899999999999 6996 899999999999999999999999995 9999999999998877666 8999
Q ss_pred EEEEecCCCC---CCHHHHHHHHHHHHHhhc-CCC-eeec--CCCCCCCCchhhHHH
Q 004952 658 IFVVLKKGFT---SQPDKLKMIFSKAIQSKL-NPL-FKVV--PEFPRTASNKLLRRV 707 (722)
Q Consensus 658 a~vv~~~~~~---~~~~~l~~~l~~~l~~~~-~p~-~~~v--~~lP~t~~GKvdR~~ 707 (722)
++|+++++.. .+.++++++|+++|++++ +|. +.++ ++||+|+ ||++|+.
T Consensus 377 a~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~-GKi~r~~ 432 (437)
T 2y27_A 377 LNVEPCPETAPDTAAIQVAKQALAYDIKSLIGVTAVINVLPVNGIERSV-GKARRVV 432 (437)
T ss_dssp EEECBCTTTTTCHHHHHHHHHHHHHHHHHHHCCCEEEEECCTTCSCCCS-SSCCCEE
T ss_pred EEEEECCCccchhhhHHHHHHHHHHHHHHhcCCceEEEEeCCCCccCCC-CcceEEE
Confidence 9999887543 234789999999999996 884 4455 6999999 9999964
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.97 E-value=2.8e-32 Score=292.61 Aligned_cols=237 Identities=14% Similarity=0.047 Sum_probs=179.3
Q ss_pred CCCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHh---hhhcCCCCCCEEEEecCc-cccchhHHHHHHhhcCCEEEEe
Q 004952 353 NPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG---WAHIDLKVGDVYCWPTNL-GWVMGPVILFSSFLNGATLALY 428 (722)
Q Consensus 353 ~~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~---~~~~~~~~~d~~l~~~~~-~~~~~~~~~~~~L~~G~~lv~~ 428 (722)
.+++++++|+|||||||+||||+++|+++.+.+.+. ...+++.++|++++..|+ .|+.+....+.++..|+ +++.
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~-~v~~ 166 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGG-MFFS 166 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTS-CEEC
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCC-EEEC
Confidence 467899999999999999999999999998888743 355678999999999999 88888887888899999 4444
Q ss_pred cCCCChh-----------------------hHHHHHHHhCCcEEechhHHHHHHHhcCCCCCCCccceeEEEeecCCCCc
Q 004952 429 QGSPLER-----------------------SFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNV 485 (722)
Q Consensus 429 ~~~~~~~-----------------------~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~~Ge~l~~ 485 (722)
. ..++. .++++|+++++|++.++|+++..|++.......++++||.+++|||++++
T Consensus 167 ~-~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~ 245 (369)
T 3hgu_A 167 I-DIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNL 245 (369)
T ss_dssp C-CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSCCCH
T ss_pred c-cCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCccCCH
Confidence 3 34555 77779999999999999999999987633223457899999999999999
Q ss_pred chHHHHH-hhccCCcccccccccccccccccCCcCCcCcccccccc------CCCceEEEECC-CCCcCCCCCCccceEE
Q 004952 486 DDDLWLS-SKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTA------TMTAGLVILDE-CGVPYPDDQPCVGEVG 557 (722)
Q Consensus 486 ~~~~~~~-~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p------~~~~~~~vld~-~~~~~p~G~~giGel~ 557 (722)
++.+++. +.+++++++|.||+||+++++..... .++|+| +++++++|+|+ +|+++|.|+. |||+
T Consensus 246 ~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~------~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~--GEl~ 317 (369)
T 3hgu_A 246 DEIKFIASEILPDCEFSASYGSTSALGVSRSLLI------TSESQQVIYDSFSPFITYDVVDSITAQTVEYGER--GNVI 317 (369)
T ss_dssp HHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB------CTTCSSCEEECCTTTEEEEEECTTTCSBCCTTCE--EEEE
T ss_pred HHHHHHHHHhCCCcEEEcccCchhhhcceecccc------ccCCCcccccCCCCCeEEEEECCCCCcCCCCCCc--eEEE
Confidence 9999999 88878999999999999865432211 158899 99999999997 8999999995 9999
Q ss_pred EecccCCCccccccccccccceeccccCCCceecccCceEEEecC---------CcEEEEeecCCeeecCce
Q 004952 558 LFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVG---------GYIIVQGRADDTMNLGGI 620 (722)
Q Consensus 558 v~~~y~~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~d---------G~l~~~GR~dd~ik~~G~ 620 (722)
|.... +..|.. .|+|||++++.+. ..+..++|.|+++||.|.
T Consensus 318 vt~l~-------------~~~~l~--------ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 318 VTHLS-------------PWAFYP--------RVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp EEEEE-------------TTEEEE--------EEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred EEEcC-------------cccccc--------cccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence 85421 112211 5999999988543 245678899999999885
No 37
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.59 E-value=3.3e-15 Score=129.09 Aligned_cols=94 Identities=20% Similarity=0.308 Sum_probs=75.1
Q ss_pred eecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEEEEEEEecCCCCCCH---HHHHHHHHHHHHhhc
Q 004952 609 GRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQP---DKLKMIFSKAIQSKL 685 (722)
Q Consensus 609 GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~a~vv~~~~~~~~~---~~l~~~l~~~l~~~~ 685 (722)
.|+||+||++|+||+|.|||++|. +||+|.+++|++++++.++ +.++++|+..++...+. +++.+.+++++.+++
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~-~~p~v~~~~vv~v~~~~~~-~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~ 78 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILL-QFKELGSDYLITLETAESN-DEMTVEVELSQLFTDDYGRLQALTREITRQLKDEI 78 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHH-TCTTEEEEEEEEEEEETTE-EEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCEEEEECCEEECHHHHHHHHH-hCCCcccceEEEEeccccc-eeEEEEEEEeeccccccchhhhhHHHHHHHHHHHh
Confidence 499999999999999999999995 9999999999999998887 89999999988655443 456777888887765
Q ss_pred -CC-Ceeec--CCCCCCCCchhhH
Q 004952 686 -NP-LFKVV--PEFPRTASNKLLR 705 (722)
Q Consensus 686 -~p-~~~~v--~~lP~t~~GKvdR 705 (722)
+| ...++ ++||+| +||++|
T Consensus 79 gv~~~v~~v~~~~lPrt-sGKi~R 101 (109)
T 3lax_A 79 LVTPRVKLVPKGALPKS-EGKAVR 101 (109)
T ss_dssp SSCCEEEEECTTCSCCC----CCC
T ss_pred CCccceEEEcCCeecCC-CCCcch
Confidence 34 33344 689998 799977
No 38
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.54 E-value=1.5e-14 Score=124.73 Aligned_cols=94 Identities=20% Similarity=0.319 Sum_probs=73.5
Q ss_pred eecCCeeecCceeechHHHHHHHhccCCCcceeEEEeecCCCCCceEEEEEEEecCCCCC----CHHHHHHHHHHHHHhh
Q 004952 609 GRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTS----QPDKLKMIFSKAIQSK 684 (722)
Q Consensus 609 GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~a~vv~~~~~~~----~~~~l~~~l~~~l~~~ 684 (722)
||.||+||++|++|+|.|||++|. .||+|.++++++++++.++ +.++++|++ ++... +.+++.++|++++.+.
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~-~~p~v~~~~~v~v~~~~~~-e~l~~~ve~-~~~~~~~~~~~~~l~~~i~~~l~~~ 77 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILL-QFKELGSDYLITLETAESN-DEMTVEVEL-SQLFTDDYGRLQALTREITRQLKDE 77 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHH-TCTTEEEEEEEEEEEETTE-EEEEEEEEE-CTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCccCEEEECCEEECHHHHHHHHH-hCCCcCCcEEEEEEcCCCc-eEEEEEEEE-cCccccchhHHHHHHHHHHHHHHHh
Confidence 899999999999999999999996 8999999999888877665 899999998 65322 3467888888888753
Q ss_pred -cCC-CeeecC--CCCCCCCchhhHH
Q 004952 685 -LNP-LFKVVP--EFPRTASNKLLRR 706 (722)
Q Consensus 685 -~~p-~~~~v~--~lP~t~~GKvdR~ 706 (722)
.++ ...+++ +||+| |||+.|.
T Consensus 78 ~~~~~~v~~v~~~~lPrt-sGKi~R~ 102 (109)
T 3gxs_A 78 ILVTPRVKLVPKGALPKS-EGKAVRV 102 (109)
T ss_dssp HSSCCEEEEECTTCSCCC----CCCE
T ss_pred hCCceEEEEECCCCccCC-CCceEEE
Confidence 344 344666 99999 9999873
No 39
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=98.72 E-value=1.1e-07 Score=104.83 Aligned_cols=71 Identities=23% Similarity=0.255 Sum_probs=51.1
Q ss_pred cccCceEEEec----CCcEEEEeecCCeeecCceeechHHHHHHHhccC-----C--CcceeEEEeecCCCCCceEEEEE
Q 004952 591 RRHGDIIKRTV----GGYIIVQGRADDTMNLGGIKTSSVEIERVCDQAD-----E--SILETAAISVSPAGGGPEVLVIF 659 (722)
Q Consensus 591 yrTGDl~~~~~----dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~-----p--~V~~~~vv~~~~~~~g~~~l~a~ 659 (722)
||+||++++.. ...|.|+||.+++++++|.+|...+||++|.+.. . .|.|-.+..-..... ..-+.|
T Consensus 412 Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~a~~~l~~~g~~l~eft~~~d~~~~p--~Hyv~~ 489 (609)
T 4b2g_A 412 YRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDNASKLLREVNTSVVEYTSFADTKTIP--GHYVIY 489 (609)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHGGGGTTEEEEEEEEEEECSSSS--CEEEEE
T ss_pred eecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHHHHHHhhhccCCeEEEEEEecCCCCCC--CcEEEE
Confidence 99999999974 5789999999999999999999999999985322 2 255655543222212 244555
Q ss_pred EEec
Q 004952 660 VVLK 663 (722)
Q Consensus 660 vv~~ 663 (722)
+..+
T Consensus 490 wEl~ 493 (609)
T 4b2g_A 490 WELL 493 (609)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5554
No 40
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.69 E-value=1.9e-07 Score=102.38 Aligned_cols=162 Identities=16% Similarity=0.088 Sum_probs=90.0
Q ss_pred ccceeE--EEeecCCCCcchHHHHHhhccCCccc-ccccccccccccccCCcCCcCccccccccCCCceE-EEE--CCCC
Q 004952 470 WTKIRS--FASTGETSNVDDDLWLSSKAWYNAII-ESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGL-VIL--DECG 543 (722)
Q Consensus 470 l~~Lr~--i~~~Ge~l~~~~~~~~~~~~~~~~l~-n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~-~vl--d~~~ 543 (722)
+++|+. ++++|. + ..-...++..+++.+++ ..|+.||+-..+-..+...+... ....+|+... ..+ |+.+
T Consensus 301 WPnl~~i~~~~~G~-~-~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~gi~~~p~~~~~~~--~~~L~p~~~ffEFiP~~~~~ 376 (581)
T 4epl_A 301 FPNAKYVYGIMTGS-M-EPYVPKLRHYAGDLPLVSHDYGSSEGWIAANVTPRLSPEEA--TFAVIPNLGYFEFLPVSETG 376 (581)
T ss_dssp CTTCCCEEEECSGG-G-GGGHHHHHHHHTTSCEEECCEEETTEEEEECCCTTSCTTTC--CEEECTTSCEEEEEEC----
T ss_pred CCCCceEEEEeCCC-h-HHHHHHHHHHcCCCccccCceeccceeeeeecCCCCCcccc--ceeecCCcEEEEEEeccccc
Confidence 567753 344552 2 22234454445567776 99999997432211111111110 1122333311 222 3221
Q ss_pred ---------CcCCCCCCccceEEEecccCCCccccccccccccceeccccCCCceecccCceEEEecC----CcEEEEee
Q 004952 544 ---------VPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVG----GYIIVQGR 610 (722)
Q Consensus 544 ---------~~~p~G~~giGel~v~~~y~~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~d----G~l~~~GR 610 (722)
..|..|+. +|++|+..- |-.-||+||++++..- ..|.|+||
T Consensus 377 ~~~~~~v~l~eve~G~~--YelviTt~~------------------------GL~RYr~GD~v~v~g~~~~~p~~~~~gR 430 (581)
T 4epl_A 377 EGEEKPVGLTQVKIGEE--YEVVITNYA------------------------GLYRYRLGDVVKVIGFYNNTPQLKFICR 430 (581)
T ss_dssp ---CCCEEGGGCCTTCE--EEEEEESTT------------------------SCSSEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred CCCCceeeHHHcCCCCe--EEEEEeecc------------------------ceeeEEcCCEEEEecccCCCcEEEEEee
Confidence 24556664 788874320 1013999999998642 67999999
Q ss_pred cCCeeecCceeechHHHHHHHhcc-----CC--CcceeEEEeecCCCCCceEEEEEEEec
Q 004952 611 ADDTMNLGGIKTSSVEIERVCDQA-----DE--SILETAAISVSPAGGGPEVLVIFVVLK 663 (722)
Q Consensus 611 ~dd~ik~~G~ri~~~eIE~~l~~~-----~p--~V~~~~vv~~~~~~~g~~~l~a~vv~~ 663 (722)
.|+++++.|.++...+||.+|.+. .. .|.|..+...... .. ..-+.|+...
T Consensus 431 ~~~~l~~~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~~~-~p-~hyv~~wE~~ 488 (581)
T 4epl_A 431 RNLILSINIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVST-DP-GHYAIFWEIS 488 (581)
T ss_dssp TTCCBCSSSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEECSS-SS-CEEEEEEEES
T ss_pred cCCeEEeeeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCCCC-CC-CcEEEEEeec
Confidence 999999999999999999998531 22 3666665542222 11 3445555664
No 41
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=98.68 E-value=9.6e-08 Score=105.11 Aligned_cols=132 Identities=14% Similarity=0.088 Sum_probs=79.2
Q ss_pred ccc---eeEEEeecCCCCcchHHHHHhhccCCccc-ccccccccccccccCCcCCcCccccccc-cCCCc-eEEEEC--C
Q 004952 470 WTK---IRSFASTGETSNVDDDLWLSSKAWYNAII-ESCGGTELSSAYIQGSLLQPQAFGAFST-ATMTA-GLVILD--E 541 (722)
Q Consensus 470 l~~---Lr~i~~~Ge~l~~~~~~~~~~~~~~~~l~-n~YG~TE~~~~~~~~~~~~~~~~~~iG~-p~~~~-~~~vld--~ 541 (722)
+++ +..++.||- ..-...++..+++.+++ ..|+.||+...+-..+...+. ..+. .+++. =...++ +
T Consensus 296 WPnl~~l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~gi~~~p~~~~~---~~~~~L~~~~~ffEFip~~~ 369 (581)
T 4eql_A 296 WPNTKYIETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSETTFGINLDPLCKPE---DVSYTFMPNMSYFEFIPMDG 369 (581)
T ss_dssp STTCCEEEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSCEEEECSCTTSCGG---GCCEEECTTSSEEEEEECST
T ss_pred CCCCcEEEEEcCCCh---HHHHHHHHHHcCCCccccCccccccceeeeccCCCCCcc---cCceeecCCcEEEEEEeccc
Confidence 456 555666662 22234455555667776 899999964322111111111 1111 23333 222343 2
Q ss_pred C--CC-----cCCCCCCccceEEEecccCCCccccccccccccceeccccCCCceecccCceEEEec----CCcEEEEee
Q 004952 542 C--GV-----PYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTV----GGYIIVQGR 610 (722)
Q Consensus 542 ~--~~-----~~p~G~~giGel~v~~~y~~~~~~~~~~~~t~~~f~~~p~~~g~r~yrTGDl~~~~~----dG~l~~~GR 610 (722)
. .+ .|..|+. +|++|+..- |-.-||+||++++.. ...|.|+||
T Consensus 370 ~~~~~~v~l~eVe~G~~--YelViTt~~------------------------GL~RYr~GD~v~v~~f~~~~p~i~f~gR 423 (581)
T 4eql_A 370 GDKNDVVDLEDVKLGCT--YEPVVTNFA------------------------GLYRMRVGDIVLVTGFYNNAPQFKFVRR 423 (581)
T ss_dssp TCCSSCEEGGGCCTTCE--EEEEEECSS------------------------SCCSEECCEEEEEEEEETTEEEEEEEEE
T ss_pred cCCCcEeCHHHcCCCce--EEEEEeecc------------------------ceeeEEcCCEEEEcccCCCCcEEEEEEe
Confidence 1 12 2335553 777774320 111399999999976 568999999
Q ss_pred cCCeeecCceeechHHHHHHHhc
Q 004952 611 ADDTMNLGGIKTSSVEIERVCDQ 633 (722)
Q Consensus 611 ~dd~ik~~G~ri~~~eIE~~l~~ 633 (722)
.+++++++|.++...+||++|.+
T Consensus 424 ~~~~l~~~Gekl~~~~v~~al~~ 446 (581)
T 4eql_A 424 ENVVLSIDSDKTNEEDLFKAVSQ 446 (581)
T ss_dssp TTEEECSSSCCEEHHHHHHHHHH
T ss_pred cCCEEEeeeeECCHHHHHHHHHH
Confidence 99999999999999999999963
No 42
>2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensatio domain, peptide bond formation, ligase; 1.85A {Brevibacillus brevis}
Probab=98.04 E-value=7.2e-08 Score=107.55 Aligned_cols=126 Identities=13% Similarity=0.037 Sum_probs=92.7
Q ss_pred ChhHHHHHHHHHHHHHhh-ccCCChhhhhHHHHHhhhcCCCCCCCcchhhhhhhhcccccccCCC----CCcc--CCCcc
Q 004952 19 KLEEAEEFDKILKQVISC-SKGLDAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGP----PLYW--FPSLD 91 (722)
Q Consensus 19 ~~~~~~~~~~~l~~~~~~-~~~~~hq~~Pfe~~lv~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~--~~~~~ 91 (722)
..++..+|.++++++.+. ..+++||++||++ |++.+++.+..+..|+ |+++|++++..... ...+ .+...
T Consensus 380 ~~~~~~~~~~~l~~v~~~~~~~~~h~~~p~~~-i~~~l~~~r~~~~~~l--f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (520)
T 2jgp_A 380 KPQREKTFSEFLQEVKQNALDAYGHQDYPFEE-LVEKLAIARDLSRNPL--FDTVFTFQNSTEEVMTLPECTLAPFMTDE 456 (520)
T ss_dssp CCCTTSBHHHHHHHHHHHHHHHHHTCCSCHHH-HHHHTCCCCCTTSCSS--CSEEEEEECCCCSCCCCSSEEEEECSSCS
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHhccCCHHH-HHHHhcCCCCCCCCCc--EEEEEEEecCCCccccCCCceeEEeecCC
Confidence 344566777878777777 5556999999999 9999998877667777 88888887643211 1111 11112
Q ss_pred c--cccccHHHHHHHhCCcccccc-cCCCCCCHHHHHHHHhhCHHHHHHHHHhhcceeeecCCe
Q 004952 92 Q--SKLTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPK 152 (722)
Q Consensus 92 ~--~~~~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~ 152 (722)
. ..++||.+.+...++++...+ |+. ++|++++++++.++|.++|+++...|+.+..
T Consensus 457 ~~~~~~~~L~l~~~~~~~~l~~~~~y~~-----~~~~~~~i~~l~~~~~~lL~~l~~~p~~~l~ 515 (520)
T 2jgp_A 457 TGQHAKFDLTFSATEEREEMTIGVEYST-----SLFTRETMERFSRHFLTIAASIVQNPHIRLG 515 (520)
T ss_dssp SCSBCSSSEEEEEEECSSCEEEEEEEET-----TTCCHHHHHHHHHHHHHHHHHHHHCTTCBGG
T ss_pred CCcceeeeeEEEEEECCCeEEEEEEECh-----hhCCHHHHHHHHHHHHHHHHHHHhCccCchh
Confidence 2 567888887766677787788 988 9999999999999999999998766655443
No 43
>4hvm_A Tlmii; PSI-biology, midwest center for structural genomics, MCSG, N product biosynthesis, natPro; 2.70A {Streptoalloteichus hindustanus}
Probab=97.42 E-value=3e-06 Score=93.60 Aligned_cols=122 Identities=5% Similarity=-0.141 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHhh-ccCCChhhhhHHHHHhh---hcCCCCCCCcchhhhhhhhcccccccCCC------------CCcc
Q 004952 23 AEEFDKILKQVISC-SKGLDAREIWRELVARK---VLKPWHPHGLHQLVYYSVYNDWDASIKGP------------PLYW 86 (722)
Q Consensus 23 ~~~~~~~l~~~~~~-~~~~~hq~~Pfe~~lv~---~l~p~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~ 86 (722)
..+|.++++++.+. ..+++| ++||+. |++ .|++.+.....++ |+++|++++..... ....
T Consensus 311 ~~t~~~~l~~v~~~~~~~~~h-~~p~~~-i~~~~~~l~~~~~~~~~~l--f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (493)
T 4hvm_A 311 EPSFRDLMSRTQAGFLDAVVH-YLPYHD-VVDLAVDLGVVTPPRVAAR--WDVAVHLCRNAPSSSLTRGERTLAELGVSI 386 (493)
T ss_dssp SCBHHHHHHHHHHHHHHHHHT-CCCHHH-HHHHHHHTTSCBTTBTTGG--GCEEECC--------------------CEE
T ss_pred CCCHHHHHHHHHHHHHHHHhh-cCCHHH-HHHHHhhhCcccCCCCCcc--eeEEEEEEecCCccccccccccccCCCcee
Confidence 56677777777776 555699 999999 999 8988877777777 89999987543221 1111
Q ss_pred CCCcc----------------cccccc---HHHHHHHhCCcccccc-cCCCCCCHHHHHHHHhhCHHHHHHHHHhhccee
Q 004952 87 FPSLD----------------QSKLTN---LGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVV 146 (722)
Q Consensus 87 ~~~~~----------------~~~~~~---l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~ 146 (722)
.+... ..++++ +.+.+...++++...+ |+. ++| +++++++.++|.++|+++...
T Consensus 387 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~l~v~~~~~~l~~~~~y~~-----~l~-~~~i~~l~~~~~~~L~~~~~~ 460 (493)
T 4hvm_A 387 ELFREADLIGGDTRSATDTWDGTDTWDGTTTDLSVGELGEDMVIVLDQRR-----THP-AGGGSALLDGLDAAMAQAVAD 460 (493)
T ss_dssp EECSHHHHCC-------CCTTCCCCCCCCCEEEEEEEETTEEEEEEEECC-------------CHHHHHHHHHHHHHHHC
T ss_pred eeccccccccccccccccccccccccCCcceEEEEEEeCCeEEEEEEEcc-----ccC-HHHHHHHHHHHHHHHHHHHhC
Confidence 11100 123566 7777666777888888 998 999 999999999999999999888
Q ss_pred eecCCeee
Q 004952 147 FREAPKCI 154 (722)
Q Consensus 147 ~~~~~~~~ 154 (722)
|+.+..++
T Consensus 461 p~~~l~~l 468 (493)
T 4hvm_A 461 PSAPLPHS 468 (493)
T ss_dssp TTSBCCC-
T ss_pred CCCccccC
Confidence 87777664
No 44
>1l5a_A Amide synthase, VIBH; nonribosomal peptide synthetase, NRPS condensation domain, vibriobactin, biosynthetic protein; 2.55A {Vibrio cholerae} SCOP: c.43.1.2 c.43.1.2
Probab=97.22 E-value=3.5e-06 Score=91.47 Aligned_cols=129 Identities=6% Similarity=-0.146 Sum_probs=86.3
Q ss_pred CChhHHHHHHHHHHHHHhh-ccCCChhhhhHHHHHhhhcCCCCCCCcchhhhhhhhcccccccCC--CCCccC--CCccc
Q 004952 18 LKLEEAEEFDKILKQVISC-SKGLDAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKG--PPLYWF--PSLDQ 92 (722)
Q Consensus 18 ~~~~~~~~~~~~l~~~~~~-~~~~~hq~~Pfe~~lv~~l~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~ 92 (722)
+..++..+|.++++++.+. ..+++||++||+. +++.++..+. ..++ |+++|+++..... ....+. .....
T Consensus 283 ~~~~~~~t~~~~l~~v~~~~~~~~~h~~~~~~~-i~~~l~~~~~--~~~l--f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (436)
T 1l5a_A 283 RLSAQQTSLGNYLKQSGQAIRSLYLHGRYRIEQ-IEQDQGLNAE--QSYF--MSPFINILPFESPHFADCQTELKVLASG 357 (436)
T ss_dssp CCCCTTCBHHHHHHHHHHHHHHHHHTTTSCHHH-HHHHTTCCTT--CCBC--CCSEEEEECCCCCCCTTCEEEEEEEEEC
T ss_pred EecCCCCCHHHHHHHHHHHHHHHhhhcCCCHHH-HHHHhccccc--CCCc--cceEEEeeccCccccCCCeeEEEecCCC
Confidence 3445566788888777777 5555999999999 9999987642 2344 6666776643221 111110 01112
Q ss_pred cccccHHHHHH-HhCCcccccc-cCCCCCCHHHHHHHHhhCHHHHHHHHHhhccee---eecCCeeeccC
Q 004952 93 SKLTNLGNALE-IHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVV---FREAPKCILDR 157 (722)
Q Consensus 93 ~~~~~l~~~~~-~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~---~~~~~~~~l~~ 157 (722)
... +|.+.+. ..++.+...+ |+. ++|++.+++++.++|.++|+++... |+.+..++|.+
T Consensus 358 ~~~-~l~l~v~~~~~~~l~~~~~y~~-----~~~~~~~i~~l~~~~~~~l~~l~~~~~~p~~~l~~lL~~ 421 (436)
T 1l5a_A 358 SAE-GINFTFRGSPQHELCLDITADL-----ASYPQSHWQSHCERFPRFFEQLLARFQQVEQDVARLLAE 421 (436)
T ss_dssp CCC-SEEEEEEECTTSCEEEEEEEET-----TTSCHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHS
T ss_pred Ccc-ceEEEEEecCCCcEEEEEEeCh-----hhCCHHHHHHHHHHHHHHHHHHHhccCCCcccHHHHhCC
Confidence 223 6666554 3455677777 888 9999999999999999999998877 77776666444
No 45
>2xhg_A Tyrocidine synthetase A; isomerase, nonribosomal peptide synthesis, cofactor-independ epimerization; 1.50A {Brevibacillus brevis}
Probab=94.86 E-value=0.00064 Score=74.09 Aligned_cols=116 Identities=11% Similarity=0.098 Sum_probs=71.7
Q ss_pred hHHHHHHHHHHHHHhhccCCChhhhhHHHHHhhhcCCC-----CCCCcchhhhhhhhcccccccC----CCCCccCCCc-
Q 004952 21 EEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPW-----HPHGLHQLVYYSVYNDWDASIK----GPPLYWFPSL- 90 (722)
Q Consensus 21 ~~~~~~~~~l~~~~~~~~~~~hq~~Pfe~~lv~~l~p~-----~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~- 90 (722)
++..+|.++++++.+.+.++.||++||+. + +.++.. +.....| +++|++..... .......+..
T Consensus 317 ~~~~~~~~~l~~v~~~~~~~~~~~~~~~~-~-~~l~~~~~~~~~~~~~~p----~~~f~~~~~~~~~~~~~~~~~~~~~~ 390 (466)
T 2xhg_A 317 KQTAPLSDYIKLTKENMRKIPRKGIGYDI-L-KHVTLPENRGSLSFRVQP----EVTFNYLGQFDADMRTELFTRSPYSG 390 (466)
T ss_dssp SCCCSHHHHHHHHHHHHHHSGGGGTHHHH-H-HHTSCGGGSTTCCCCCCC----SEEEEEEEECCTTCSSSSCEECTTCT
T ss_pred CCCCCHHHHHHHHHHHHHhCccCCcccce-e-eecccccccccccccCCC----eEEEeecCcccccccCCceecccccC
Confidence 44557778888877776667999999987 4 566543 2222222 24455432111 1111101100
Q ss_pred --------------cccccccHHHHHHHhCCcccccc-cCCCCCCHHHHHHHHhhCHHHHHHHHHhhcceee
Q 004952 91 --------------DQSKLTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVF 147 (722)
Q Consensus 91 --------------~~~~~~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~ 147 (722)
.....++|++.+...++++...+ |+. ++|++.+|+++.++|.++|+++...+
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~y~~-----~~~~~~~i~~l~~~~~~~L~~l~~~~ 457 (466)
T 2xhg_A 391 GNTLGADGKNNLSPESEVYTALNITGLIEGGELVLTFSYSS-----EQYREESIQQLSQSYQKHLLAIIAHC 457 (466)
T ss_dssp TCCSSTTCTTSBCTTSBCCCSEEEEEEEETTEEEEEEEEET-----TTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCcccccccccccCcceeEEEEEEEECCEEEEEEEECh-----hhCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 11225666665555566777777 988 99999999999999999999875443
No 46
>1q9j_A PAPA5, polyketide synthase associated protein 5; conjugating enzyme PAPA5, structural genomics, PSI protein structure initiative; 2.75A {Mycobacterium tuberculosis} SCOP: c.43.1.2 c.43.1.2
Probab=81.90 E-value=0.039 Score=58.76 Aligned_cols=107 Identities=10% Similarity=-0.082 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHhh-ccCCChhhhh-----HHHHHhhhcCCCCCCCcchhhhhhhhcccccccC---CCCCccCCCc--cc
Q 004952 24 EEFDKILKQVISC-SKGLDAREIW-----RELVARKVLKPWHPHGLHQLVYYSVYNDWDASIK---GPPLYWFPSL--DQ 92 (722)
Q Consensus 24 ~~~~~~l~~~~~~-~~~~~hq~~P-----fe~~lv~~l~p~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~ 92 (722)
.+|.++++++.+. ..+++||++| |++ +++.+++. .++ +++ |+ |+..... .......... ..
T Consensus 298 ~~~~~~l~~v~~~~~~~~~~~~~~~~~l~~~~-i~~~~~~~--~pl-~~~-~~---n~~~~~~~~~~~~~~~~~~~~~~~ 369 (422)
T 1q9j_A 298 TDIVDLASDIVATLRADLANGVIQQSGLHFGT-AFEGTPPG--LPP-LVF-CT---DATSFPTMRTPPGLEIEDIKGQFY 369 (422)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTHHHHSCCBGGG-GGGCCCSS--SCC-CEE-EE---CCCCCCSCCCCTTCEEEEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHHHhcCeeeecccchHH-HhcccCCC--CCc-eEE-Ee---cCCcCCCCCCCCCceeEeeecccc
Confidence 3566666666666 4555999994 999 99988753 333 332 22 3322111 1111111111 11
Q ss_pred -cccccHHHH-HHHhCCcccccccCCCCCCHHHHHHHHhhCHHHHHHHHHhhcceee
Q 004952 93 -SKLTNLGNA-LEIHGPKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALKEISVVF 147 (722)
Q Consensus 93 -~~~~~l~~~-~~~~~~~~~~~~y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~ 147 (722)
...+++.+. +...++.+...+|+. + .+++++.++|.++|+++...+
T Consensus 370 ~~~~~~l~~~~~~~~~~~l~~~~y~~-----~----~~~~~l~~~~~~~L~~l~~~~ 417 (422)
T 1q9j_A 370 CSISVPLDLYSCAVYAGQLIIEHHGH-----I----AEPGKSLEAIRSLLCTVPSEY 417 (422)
T ss_dssp CBSSCCCCEEEEEEETTEEEEEEESS-----C----SSHHHHHHHHHHHHHHTTTSC
T ss_pred cCCCCCceEEEEEeeCCeEEEEEecC-----c----cchHHHHHHHHHHHHHhhcCc
Confidence 334565554 334455555555665 4 889999999999999876443
No 47
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=81.30 E-value=3.6 Score=45.23 Aligned_cols=100 Identities=12% Similarity=0.003 Sum_probs=72.3
Q ss_pred CCCeEEEEcCCCCCCCCceEEeCChHHHHH---HHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcCCEEEEecCC
Q 004952 355 VDAVVNILFSSGTTGEPKAIPWTQLSSIRC---TAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS 431 (722)
Q Consensus 355 ~~~~a~il~TSGSTG~PKgV~~th~~~~~~---~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lv~~~~~ 431 (722)
|+.++++.+..+.++ ..+|.+.+... ++......++.++|++....+-+...- ..+|+++..|+..+..+..
T Consensus 34 p~~~a~~a~~~~~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~-~~~lA~~~~Gav~vpl~~~ 108 (550)
T 3rix_A 34 ALVPGTIAFTDAHIE----VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFF-MPVLGALFIGVAVAPANDI 108 (550)
T ss_dssp HTSTTCEEEEETTTC----CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTH-HHHHHHHHHTCEEEECCTT
T ss_pred CCCceEEEeeecCCC----cEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHH-HHHHHHHHcCCEEeecCCc
Confidence 355555544343333 46888776443 344445568999999998887765543 4477999999999998877
Q ss_pred CChhhHHHHHHHhCCcEEechhHHHHHH
Q 004952 432 PLERSFGKFVQDAGVTVLGTVPSLVKAW 459 (722)
Q Consensus 432 ~~~~~l~~~i~~~~vt~l~~~P~~l~~l 459 (722)
...+++...++..++.++++.+.....+
T Consensus 109 ~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 136 (550)
T 3rix_A 109 YNERELLNSMNISQPTVVFVSKKGLQKI 136 (550)
T ss_dssp CCHHHHHHHHHHHCCSEEEECGGGHHHH
T ss_pred CCHHHHHHHHHhcCCeEEEEcHHHHHHH
Confidence 7788999999999999999887765544
No 48
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=81.17 E-value=7.3 Score=41.18 Aligned_cols=100 Identities=10% Similarity=0.070 Sum_probs=75.7
Q ss_pred CCCceEEEEecCCCCCCcc--ceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCC--CHHHHHHHHHHHHhCcEEEec
Q 004952 189 EDNTVAIVWREDRCDESAV--NLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPM--TVRAVIIYLAIILAGYVVVSI 263 (722)
Q Consensus 189 ~pd~~Al~~~~~~~~~~~~--~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~--s~~~vv~~lA~~~aGa~~vpl 263 (722)
.++.+|.+.... |.+|.. ..+|.+.+...+..+++.+... +.++|++...++- ....+..+++++..|+..+++
T Consensus 88 ~~~~~~~i~~TS-GTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 166 (437)
T 2y27_A 88 PQDRISRIHASS-GTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPF 166 (437)
T ss_dssp CGGGCCEEEECC-CTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECC
T ss_pred ChhHeEEEEECC-CCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeC
Confidence 456666554332 233333 4679999988888888877778 9999999999885 344455678899999999987
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeccch
Q 004952 264 ADSFAAREIATRLRVSKAKGIFTQDFI 290 (722)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~ 290 (722)
++ ...+++...+++.++.+++.....
T Consensus 167 ~~-~~~~~~~~~i~~~~~t~l~~~Ps~ 192 (437)
T 2y27_A 167 GG-GQTEKQVQLIQDFRPDIIMVTPSY 192 (437)
T ss_dssp CS-CCHHHHHHHHHHHCCSEEEECHHH
T ss_pred CC-CCHHHHHHHHHHhCCCEEEECHHH
Confidence 65 478899999999999999887643
No 49
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=80.00 E-value=8.3 Score=40.83 Aligned_cols=100 Identities=13% Similarity=0.054 Sum_probs=75.3
Q ss_pred CCCceEEEEecCCCCCCcc--ceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCC--HHHHHHHHHHHHhCcEEEec
Q 004952 189 EDNTVAIVWREDRCDESAV--NLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMT--VRAVIIYLAIILAGYVVVSI 263 (722)
Q Consensus 189 ~pd~~Al~~~~~~~~~~~~--~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s--~~~vv~~lA~~~aGa~~vpl 263 (722)
.++.+|.+.... |.+|.. ..+|.+.+...+..++..+... ++++|++..+++-+ ...+..+++++..|+..+++
T Consensus 90 ~~~~~~~i~~TS-GTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 168 (443)
T 2y4o_A 90 PREQVVRVHASS-GTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPM 168 (443)
T ss_dssp CGGGCCEEEEEC-CSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECC
T ss_pred ChhheEEEEECC-CCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEEC
Confidence 456666544322 233333 4679999998888888877778 99999999998863 44456678889999999987
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeccch
Q 004952 264 ADSFAAREIATRLRVSKAKGIFTQDFI 290 (722)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~ 290 (722)
++ ...+++...+++.++.+++.....
T Consensus 169 ~~-~~~~~~~~~i~~~~~t~l~~~Ps~ 194 (443)
T 2y4o_A 169 SG-GQTEKQVQLIRDFEPKIILVTPSY 194 (443)
T ss_dssp CS-CCHHHHHHHHHHHCCSEEEECHHH
T ss_pred CC-CCHHHHHHHHHHhCCcEEEECHHH
Confidence 65 478899999999999999877643
No 50
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=79.37 E-value=9.5 Score=41.71 Aligned_cols=103 Identities=11% Similarity=-0.030 Sum_probs=74.0
Q ss_pred CCCCeEEEEcCCCC-CCCCceEEeCChHHHH---HHHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcCCEEEEec
Q 004952 354 PVDAVVNILFSSGT-TGEPKAIPWTQLSSIR---CTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQ 429 (722)
Q Consensus 354 ~~~~~a~il~TSGS-TG~PKgV~~th~~~~~---~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lv~~~ 429 (722)
.|+.+|++....+. .+. .-.+|.+.+.. .++......++.++|++....+-+..+- ..+|+++..|+..+..+
T Consensus 32 ~p~~~A~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~-~~~lA~~~~G~~~vpl~ 108 (549)
T 3g7s_A 32 FGEKTAIISAEPKFPSEF--PESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYV-MTIYALWRVAATPVPIN 108 (549)
T ss_dssp HTTSEEEEEESSCCCCSS--CSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH-HHHHHHHHTTCEEEECC
T ss_pred CCCceEEEeCCCcccccc--cceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHH-HHHHHHHHhCCEEEccC
Confidence 46778877543221 111 24577777644 3444445678999999998887775543 34779999999999998
Q ss_pred CCCChhhHHHHHHHhCCcEEechhHHHHHH
Q 004952 430 GSPLERSFGKFVQDAGVTVLGTVPSLVKAW 459 (722)
Q Consensus 430 ~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l 459 (722)
.....+++...+++.++++++..+.....+
T Consensus 109 ~~~~~~~l~~il~~~~~~~~i~~~~~~~~~ 138 (549)
T 3g7s_A 109 PMYKSFELEHILNDSEATTLVVHSMLYENF 138 (549)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEEGGGHHHH
T ss_pred CCCCHHHHHHHHHhcCCCEEEEChHHHHHH
Confidence 777788999999999999999887665544
No 51
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=78.99 E-value=8.7 Score=40.57 Aligned_cols=98 Identities=11% Similarity=0.007 Sum_probs=76.3
Q ss_pred CceEEEEecCCCCCCcc--ceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCC--CHHHHHHHHHHHHhCcEEEecCC
Q 004952 191 NTVAIVWREDRCDESAV--NLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPM--TVRAVIIYLAIILAGYVVVSIAD 265 (722)
Q Consensus 191 d~~Al~~~~~~~~~~~~--~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~--s~~~vv~~lA~~~aGa~~vpl~p 265 (722)
+.+|.+.... |.+|.. ..+|.+.+...+..+++.+... +.++|++...++- ....+..+++++..|+..++.++
T Consensus 86 ~~~a~i~~TS-GTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~ 164 (436)
T 3qov_A 86 RDGVRIHSSS-GTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAA 164 (436)
T ss_dssp HHEEEEEECS-CSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCS
T ss_pred CCeEEEEECC-CcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCC
Confidence 7777665433 233333 4689999999888888888888 9999999999874 45556677889999999998765
Q ss_pred CCCHHHHHHHHHhcCceEEEeccch
Q 004952 266 SFAAREIATRLRVSKAKGIFTQDFI 290 (722)
Q Consensus 266 ~~~~~~l~~~l~~~~~~~il~~~~~ 290 (722)
...+++...+++.++.+++.....
T Consensus 165 -~~~~~~~~~i~~~~~t~~~~~P~~ 188 (436)
T 3qov_A 165 -GNSKRQIKFISDFKTTALHAIPSY 188 (436)
T ss_dssp -CCHHHHHHHHHHHTCCEEECCHHH
T ss_pred -CCHHHHHHHHHHHCCCEEEECHHH
Confidence 467889999999999999887643
No 52
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=78.97 E-value=11 Score=41.22 Aligned_cols=100 Identities=16% Similarity=-0.004 Sum_probs=73.3
Q ss_pred CCCCeEEEEcCCCCCCCCceEEeCChHHHHH---HHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcCCEEEEecC
Q 004952 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRC---TAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (722)
Q Consensus 354 ~~~~~a~il~TSGSTG~PKgV~~th~~~~~~---~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lv~~~~ 430 (722)
.|+.+|++....+ .+..+|.+.+... ++......++.++|++....+-+...- ..+|+++..|+..+..+.
T Consensus 31 ~p~~~a~~~~~~~-----~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~-~~~lA~~~~Gav~vpl~~ 104 (541)
T 1v25_A 31 FGRKEVVSRLHTG-----EVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHL-EAYFAVPGMGAVLHTANP 104 (541)
T ss_dssp STTCEEEEECTTS-----CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH-HHHHHHHHTTCEEEECCT
T ss_pred CCCceEEEEecCC-----CCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHH-HHHHHHHhcCcEEEecCc
Confidence 4577777643211 3457888776443 344445678999999998887775543 346789999999999887
Q ss_pred CCChhhHHHHHHHhCCcEEechhHHHHHH
Q 004952 431 SPLERSFGKFVQDAGVTVLGTVPSLVKAW 459 (722)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P~~l~~l 459 (722)
....+++...+++.++.++++.+.....+
T Consensus 105 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 133 (541)
T 1v25_A 105 RLSPKEIAYILNHAEDKVLLFDPNLLPLV 133 (541)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred ccCHHHHHHHHHhCCCcEEEEChhHHHHH
Confidence 77788999999999999999887765544
No 53
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=78.38 E-value=7 Score=42.32 Aligned_cols=95 Identities=14% Similarity=0.011 Sum_probs=72.4
Q ss_pred CCCCeEEEEcCCCCCCCCceEEeCChHHHHH---HHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcCCEEEEecC
Q 004952 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRC---TAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (722)
Q Consensus 354 ~~~~~a~il~TSGSTG~PKgV~~th~~~~~~---~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lv~~~~ 430 (722)
.|+.+|++. .+..+|.+.+... ++......++.++|++....+-+..+- ..+|+++..|+..+..+.
T Consensus 19 ~pd~~Al~~---------~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~-~~~lA~~~~Ga~~vpl~~ 88 (509)
T 3ivr_A 19 FPDRTAFMV---------DGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMI-ELIGAVALIGAILLPVNY 88 (509)
T ss_dssp STTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHH-HHHHHHHHTTCEEEECCT
T ss_pred CCCceEEEE---------CCcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHH-HHHHHHHHhCCEEEecCC
Confidence 467888764 1356888877444 334445578999999998887775543 447799999999999987
Q ss_pred CCChhhHHHHHHHhCCcEEechhHHHHH
Q 004952 431 SPLERSFGKFVQDAGVTVLGTVPSLVKA 458 (722)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P~~l~~ 458 (722)
....+++...+++.++.+++..+.....
T Consensus 89 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 116 (509)
T 3ivr_A 89 RLNADEIAFVLGDGAPSVVVAGTDYRDI 116 (509)
T ss_dssp TSCHHHHHHHHHHHCEEEEEECSTTHHH
T ss_pred CCCHHHHHHHHHhcCceEEEECcchhhh
Confidence 7778899999999999999988776555
No 54
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=77.33 E-value=8.5 Score=41.98 Aligned_cols=97 Identities=14% Similarity=0.051 Sum_probs=71.4
Q ss_pred CCCCeEEEEcCCCCCCCCceEEeCChHHHH---HHHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcCCEEEEecC
Q 004952 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIR---CTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (722)
Q Consensus 354 ~~~~~a~il~TSGSTG~PKgV~~th~~~~~---~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lv~~~~ 430 (722)
.|+.+|++... +| -.+|.+.+.. .++......++.++|++....+-+..+- ..+|+++..|+..+..+.
T Consensus 35 ~p~~~a~~~~~---~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~-~~~la~~~~Gav~vpl~~ 106 (536)
T 3ni2_A 35 HSSKPCLINGA---NG----DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFV-LAFLGASHRGAIITAANP 106 (536)
T ss_dssp STTSEEEEETT---TC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH-HHHHHHHHHTCEEEECCT
T ss_pred CCCceEEEECC---CC----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHH-HHHHHHHHhCCEEeccCC
Confidence 56888876432 22 3578877644 3444445578999999988887765543 447799999999999887
Q ss_pred CCChhhHHHHHHHhCCcEEechhHHHHH
Q 004952 431 SPLERSFGKFVQDAGVTVLGTVPSLVKA 458 (722)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P~~l~~ 458 (722)
....+++...++..++.+++..+.....
T Consensus 107 ~~~~~~l~~~l~~~~~~~~i~~~~~~~~ 134 (536)
T 3ni2_A 107 FSTPAELAKHAKASRAKLLITQACYYEK 134 (536)
T ss_dssp TCCHHHHHHHHHHHTEEEEEECGGGTHH
T ss_pred CCCHHHHHHHHHhcCCEEEEEChHHHHH
Confidence 7778899999999999999887654443
No 55
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=76.38 E-value=13 Score=40.00 Aligned_cols=98 Identities=10% Similarity=-0.012 Sum_probs=70.6
Q ss_pred CCCCeEEEEcCCCCCCCCceEEeCChHHHHH---HHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcCCEEEEecC
Q 004952 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRC---TAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (722)
Q Consensus 354 ~~~~~a~il~TSGSTG~PKgV~~th~~~~~~---~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lv~~~~ 430 (722)
.|+.+|++... .+..+|.+.+... ++......++.++|++....+-+..+- ..+|+++..|+..+..+.
T Consensus 15 ~p~~~a~~~~~-------~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~-~~~lA~~~~G~~~vpl~~ 86 (504)
T 1t5h_X 15 APDHCALAVPA-------RGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVV-IAILALHRLGAVPALLNP 86 (504)
T ss_dssp CTTSEEEEETT-------TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHH-HHHHHHHHHTCEEEEECT
T ss_pred CCCceEEEEcC-------CCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHH-HHHHHHHHhCcEEEecCC
Confidence 45777776432 2356888876443 333445578999999998888776543 447799999999999987
Q ss_pred CCChhhHHHHHHHhCCcEEec--hhHHHHHH
Q 004952 431 SPLERSFGKFVQDAGVTVLGT--VPSLVKAW 459 (722)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~--~P~~l~~l 459 (722)
....+++...+++.++++++. .+.....+
T Consensus 87 ~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~ 117 (504)
T 1t5h_X 87 RLKSAELAELIKRGEMTAAVIAVGRQVADAI 117 (504)
T ss_dssp TSCHHHHHHHHHHTTCSEEEECC--CHHHHH
T ss_pred ccChHHHHHHHhhcCCcEEEEecchhhhhhh
Confidence 777889999999999999888 55554444
No 56
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=75.14 E-value=10 Score=41.29 Aligned_cols=95 Identities=7% Similarity=-0.069 Sum_probs=69.8
Q ss_pred CCCCeEEEEcCCCCCCCCceEEeCChHHHHH---HHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcCCEEEEecC
Q 004952 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRC---TAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (722)
Q Consensus 354 ~~~~~a~il~TSGSTG~PKgV~~th~~~~~~---~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lv~~~~ 430 (722)
.|+.+|++.. +..+|.+.+... ++......++.++|++....+-+...- ..+|+++..|+..+..+.
T Consensus 36 ~p~~~A~~~~---------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~-~~~lA~~~~G~~~vpl~~ 105 (529)
T 2v7b_A 36 RAGKTAYIDD---------TGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALP-VAFLGALYAGVVPVVANT 105 (529)
T ss_dssp GTTSEEEECS---------SCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHH-HHHHHHHHHTCEEEECCT
T ss_pred cCCceEEEeC---------CCCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHH-HHHHHHHHcCceEEecCc
Confidence 5677777532 135788776443 344445678999999998887775543 346799999999999887
Q ss_pred CCChhhHHHHHHHhCCcEEechhHHHHH
Q 004952 431 SPLERSFGKFVQDAGVTVLGTVPSLVKA 458 (722)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P~~l~~ 458 (722)
....+++...+++.++.+++..+.....
T Consensus 106 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 133 (529)
T 2v7b_A 106 LLTPADYVYMLTHSHARAVIASGALVQN 133 (529)
T ss_dssp TCCHHHHHHHHHHHTCSEEEEEGGGHHH
T ss_pred ccCHHHHHHHHhccCCeEEEechhhhhH
Confidence 7778889999999999999887665443
No 57
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=74.63 E-value=17 Score=39.99 Aligned_cols=101 Identities=9% Similarity=-0.036 Sum_probs=72.7
Q ss_pred CCCCeEEEEcCCCCCCCCceEEeCChHHHHHH---HHhhhhc-CCCCCCEEEEecCccccchhHHHHHHhhcCCEEEEec
Q 004952 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCT---AEGWAHI-DLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQ 429 (722)
Q Consensus 354 ~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~---~~~~~~~-~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lv~~~ 429 (722)
.|+.+|++.... .| ....+|.+.+...+ +...... ++.++|++....+-+..+- ..+|+++..|+..+..+
T Consensus 56 ~p~~~al~~~~~--~g--~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~~-~~~lA~~~~Ga~~vpl~ 130 (570)
T 3c5e_A 56 RPPSPALWWVNG--KG--KELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWW-LVILGCIRAGLIFMPGT 130 (570)
T ss_dssp SCCCEEEEEECS--SS--CEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHHH-HHHHHHHHHTCEEEECC
T ss_pred CCCceEEEEEcC--CC--ceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHHH-HHHHHHHHcCeEEEecC
Confidence 467788765421 12 24578887764433 3333344 8999999998887775543 34679999999999988
Q ss_pred CCCChhhHHHHHHHhCCcEEechhHHHHHH
Q 004952 430 GSPLERSFGKFVQDAGVTVLGTVPSLVKAW 459 (722)
Q Consensus 430 ~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l 459 (722)
.....+++...++..++.++++.+.....+
T Consensus 131 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 160 (570)
T 3c5e_A 131 IQMKSTDILYRLQMSKAKAIVAGDEVIQEV 160 (570)
T ss_dssp TTCCHHHHHHHHHHHTCSEEEEETTTHHHH
T ss_pred CCCCHHHHHHHHHhcCCeEEEechHHHHHH
Confidence 777778899999999999999877665544
No 58
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=73.39 E-value=15 Score=39.75 Aligned_cols=95 Identities=9% Similarity=-0.012 Sum_probs=70.3
Q ss_pred CCCCeEEEEcCCCCCCCCceEEeCChHHHH---HHHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcCCEEEEecC
Q 004952 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIR---CTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (722)
Q Consensus 354 ~~~~~a~il~TSGSTG~PKgV~~th~~~~~---~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lv~~~~ 430 (722)
.|+.+|++.. | +...+|.+.+.. .++......++.++|++....+-+..+- ..+|+++..|+..+..+.
T Consensus 29 ~p~~~A~~~~--~-----~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~-~~~lA~~~~G~~~vpl~~ 100 (517)
T 3r44_A 29 SPRLQAYVEP--S-----TDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFC-CLFYGAAKLGAVAVPINT 100 (517)
T ss_dssp STTSEEEEEG--G-----GTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH-HHHHHHHHHTCEEEECCT
T ss_pred CCCCeEEEeC--C-----cCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHH-HHHHHHHHhCcEEEecCc
Confidence 4677887653 1 234688887644 3444445578999999998887775543 347799999999999987
Q ss_pred CCChhhHHHHHHHhCCcEEechhHHH
Q 004952 431 SPLERSFGKFVQDAGVTVLGTVPSLV 456 (722)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P~~l 456 (722)
....+++...+++.++.+++..+...
T Consensus 101 ~~~~~~l~~~l~~~~~~~vi~~~~~~ 126 (517)
T 3r44_A 101 RLAAPEVSFILSDSGSKVVIYGAPSA 126 (517)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGGH
T ss_pred ccCHHHHHHHHHhcCceEEEECCchH
Confidence 77778899999999999988765443
No 59
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=72.45 E-value=18 Score=38.54 Aligned_cols=105 Identities=14% Similarity=0.061 Sum_probs=73.2
Q ss_pred CCCCeEEEEcCC--CCCCCCceEEeCChHHHHHHH---HhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcCCEEEEe
Q 004952 354 PVDAVVNILFSS--GTTGEPKAIPWTQLSSIRCTA---EGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALY 428 (722)
Q Consensus 354 ~~~~~a~il~TS--GSTG~PKgV~~th~~~~~~~~---~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lv~~ 428 (722)
.|+.+|++.... +.+| ....+|.+.+...+. ......+. ++|++....+-+..+- ..+|+++..|+..+..
T Consensus 37 ~pd~~Al~~~~~~~~~~g--~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~-~~~lA~~~~G~v~vpl 112 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDG--VAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYV-VAFLGALQAGRIAVPL 112 (480)
T ss_dssp STTSEEEEEEETTTCTTC--EEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHH-HHHHHHHHTTCEEEEE
T ss_pred CCCCceEEEecccCCCCC--ceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHH-HHHHHHHHhCcEEEee
Confidence 568888775442 2222 336788887755443 33344565 8999988877765543 3477999999999988
Q ss_pred cC---CCChhhHHHHHHHhCCcEEechhHHHHHHHhc
Q 004952 429 QG---SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNT 462 (722)
Q Consensus 429 ~~---~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~ 462 (722)
+. ....+++...+++.++.+++..+.....+...
T Consensus 113 ~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~ 149 (480)
T 3t5a_A 113 SVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQH 149 (480)
T ss_dssp CSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHT
T ss_pred CCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHH
Confidence 64 33457889999999999999988877766543
No 60
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=72.37 E-value=16 Score=40.12 Aligned_cols=96 Identities=9% Similarity=-0.065 Sum_probs=71.0
Q ss_pred CCCCeEEEEcCCCCCCCCceEEeCChHHHHH---HHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcCCEEEEecC
Q 004952 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRC---TAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (722)
Q Consensus 354 ~~~~~a~il~TSGSTG~PKgV~~th~~~~~~---~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lv~~~~ 430 (722)
.|+.+|++.. +-.+|.+.+... ++......++.++|++....+-+...- ..+|+++..|+..+..+.
T Consensus 52 ~p~~~Al~~~---------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~-~~~lA~~~~Gav~vpl~~ 121 (563)
T 1amu_A 52 RPNNVAIVCE---------NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLF-IGILAVLKAGGAYVPIDI 121 (563)
T ss_dssp CTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH-HHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEEeC---------CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHH-HHHHHHHHhCCEEEEeCC
Confidence 4677777631 236788776443 333344568999999988887765543 347789999999999887
Q ss_pred CCChhhHHHHHHHhCCcEEechhHHHHHH
Q 004952 431 SPLERSFGKFVQDAGVTVLGTVPSLVKAW 459 (722)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P~~l~~l 459 (722)
....+++...+++.++.+++..+.....+
T Consensus 122 ~~~~~~l~~il~~~~~~~li~~~~~~~~~ 150 (563)
T 1amu_A 122 EYPKERIQYILDDSQARMLLTQKHLVHLI 150 (563)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred CCcHHHHHHHHHhcCCCEEEEcCchhhhh
Confidence 77778999999999999999887655443
No 61
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=70.43 E-value=18 Score=39.79 Aligned_cols=95 Identities=12% Similarity=0.040 Sum_probs=70.8
Q ss_pred CCCCeEEEEcCCCCCCCCceEEeCChHHHH---HHHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcCCEEEEecC
Q 004952 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIR---CTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (722)
Q Consensus 354 ~~~~~a~il~TSGSTG~PKgV~~th~~~~~---~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lv~~~~ 430 (722)
.|+.+|++.... .| ....+|.+.+.. .++......+++++|++....+-+..+- ..+|+++..|+..+..+.
T Consensus 69 ~pd~~Al~~~~~--~g--~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~-~~~lA~~~~Gav~vpl~~ 143 (580)
T 3etc_A 69 SPEKLAMIWCDD--YG--NEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFW-YCMLGLHKLGAIAVPATH 143 (580)
T ss_dssp CTTCEEEEEEES--SS--CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHH-HHHHHHHHHTCEEEECCT
T ss_pred CCCCEEEEEEcC--CC--CEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHH-HHHHHHHhCCEEEEeCCc
Confidence 578888876532 12 346788877644 3444445679999999998887775543 347789999999999887
Q ss_pred CCChhhHHHHHHHhCCcEEechh
Q 004952 431 SPLERSFGKFVQDAGVTVLGTVP 453 (722)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P 453 (722)
....+++...+++.++.++++.+
T Consensus 144 ~~~~~~l~~~l~~~~~~~ii~~~ 166 (580)
T 3etc_A 144 MLKTRDIVYRIEKAGLKMIVCIA 166 (580)
T ss_dssp TCCHHHHHHHHHHHTCCEEEEES
T ss_pred cCCHHHHHHHHHhcCCCEEEEec
Confidence 77788999999999999988754
No 62
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=69.59 E-value=21 Score=39.99 Aligned_cols=97 Identities=13% Similarity=0.043 Sum_probs=71.4
Q ss_pred CCCCeEEEEcCCCCCCCCceEEeCChHHHH---HHHHhhh-hcCCCCCCEEEEecCccccchhHHHHHHhhcCCEEEEec
Q 004952 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIR---CTAEGWA-HIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQ 429 (722)
Q Consensus 354 ~~~~~a~il~TSGSTG~PKgV~~th~~~~~---~~~~~~~-~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lv~~~ 429 (722)
.|+.+|++... ..+| .+..+|.+.+.. .++.... ..+++++|++..+.+.+...- ..+|+++..|+..+...
T Consensus 95 ~pd~~Al~~~~-~~~~--~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v-~a~lA~~~~Gav~vpl~ 170 (663)
T 1ry2_A 95 TPNKKAIIFEG-DEPG--QGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAI-ITLLAISRIGAIHSVVF 170 (663)
T ss_dssp CTTSEEEEEEC-SSTT--CCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHH-HHHHHHHHTTCEEEECC
T ss_pred CCCceEEEEEc-CCCC--ceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHH-HHHHHHHHcCCEEEeeC
Confidence 46778876542 2222 245688877644 3444444 678999999999988876544 34779999999999988
Q ss_pred CCCChhhHHHHHHHhCCcEEechhH
Q 004952 430 GSPLERSFGKFVQDAGVTVLGTVPS 454 (722)
Q Consensus 430 ~~~~~~~l~~~i~~~~vt~l~~~P~ 454 (722)
.....+.+...|++.++.++++...
T Consensus 171 ~~~~~~~l~~~l~~~~~~~li~~~~ 195 (663)
T 1ry2_A 171 AGFSSNSLRDRINDGDSKVVITTDE 195 (663)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEEESB
T ss_pred CCCCHHHHHHHHHhcCCeEEEEccc
Confidence 7778889999999999999987653
No 63
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=69.28 E-value=15 Score=39.51 Aligned_cols=80 Identities=16% Similarity=0.101 Sum_probs=62.1
Q ss_pred EeCChHHHHH---HHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcCCEEEEecCCCChhhHHHHHHHhCCcEEec
Q 004952 375 PWTQLSSIRC---TAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGT 451 (722)
Q Consensus 375 ~~th~~~~~~---~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~ 451 (722)
.+|.+.+... ++......++.++|++....+-+..+- ..+|+++..|+..+..+.....+++...+++.++.++++
T Consensus 28 ~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~-~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~ 106 (503)
T 4fuq_A 28 KISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEAL-VLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVC 106 (503)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHH-HHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEEE
T ss_pred EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHH-HHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEEE
Confidence 5788776443 334445568999999998887775543 347799999999999987777889999999999999988
Q ss_pred hhHH
Q 004952 452 VPSL 455 (722)
Q Consensus 452 ~P~~ 455 (722)
.+..
T Consensus 107 ~~~~ 110 (503)
T 4fuq_A 107 DPSK 110 (503)
T ss_dssp CGGG
T ss_pred Cchh
Confidence 7643
No 64
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=67.42 E-value=20 Score=39.00 Aligned_cols=90 Identities=13% Similarity=0.017 Sum_probs=67.5
Q ss_pred CCCCeEEEEcCCCCCCCCceEEeCChHHHH---HHHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcCCEEEEecC
Q 004952 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIR---CTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (722)
Q Consensus 354 ~~~~~a~il~TSGSTG~PKgV~~th~~~~~---~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lv~~~~ 430 (722)
.|+.+|++. .+-.+|.+.+.. .++......++.++|++....+-+..+- ..+|+++..|+..+..+.
T Consensus 43 ~p~~~Al~~---------~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~-~~~lA~~~~Gav~vpl~~ 112 (544)
T 3o83_A 43 HPHSLAIIC---------GERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFY-IVFFALLKAGVVVLNALY 112 (544)
T ss_dssp CTTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHH-HHHHHHHHHTCEEEECCT
T ss_pred CCCceEEEc---------CCCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHH-HHHHHHHHhCcEEecCCC
Confidence 568888763 134688877644 3444445678999999998887765543 347789999999988876
Q ss_pred CCChhhHHHHHHHhCCcEEechh
Q 004952 431 SPLERSFGKFVQDAGVTVLGTVP 453 (722)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P 453 (722)
......+...+++.++.+++..+
T Consensus 113 ~~~~~~l~~~l~~~~~~~li~~~ 135 (544)
T 3o83_A 113 SHRQYELNAFIKQIQPKLLIGSR 135 (544)
T ss_dssp TCCHHHHHHHHHHHCCSEEEEET
T ss_pred CCCHHHHHHHHHhcCeeEEEEcc
Confidence 67778899999999999998765
No 65
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=67.36 E-value=22 Score=39.05 Aligned_cols=92 Identities=18% Similarity=0.110 Sum_probs=68.9
Q ss_pred CCCCeEEEEcCCCCCCCCceEEeCChHHHH---HHHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcCCEEEEecC
Q 004952 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIR---CTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (722)
Q Consensus 354 ~~~~~a~il~TSGSTG~PKgV~~th~~~~~---~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lv~~~~ 430 (722)
.|+.+|++.- +-.+|.+.+.. .++......++.++|++....+-+..+- ..+|+++..|+..+..+.
T Consensus 88 ~pd~~A~~~~---------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~-~~~lA~~~~G~~~vpl~~ 157 (570)
T 4gr5_A 88 APDAVALLHE---------ADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMV-VALLAVLKAGGGYTMLDP 157 (570)
T ss_dssp CTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH-HHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEECC---------CCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHH-HHHHHHHHHCCEEEEcCC
Confidence 4677887631 23578877644 3344445578999999998887775543 347799999999999987
Q ss_pred CCChhhHHHHHHHhCCcEEechhHH
Q 004952 431 SPLERSFGKFVQDAGVTVLGTVPSL 455 (722)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P~~ 455 (722)
....+++...++..++.++++....
T Consensus 158 ~~~~~~l~~~l~~~~~~~~i~~~~~ 182 (570)
T 4gr5_A 158 QFPVERLALSLEDTGAPLLVTSRPL 182 (570)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECTTT
T ss_pred CChHHHHHHHHHhcCCCEEEecchh
Confidence 7778899999999999999876543
No 66
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=66.45 E-value=25 Score=39.29 Aligned_cols=96 Identities=16% Similarity=0.052 Sum_probs=70.3
Q ss_pred CCCCeEEEEcCCCCCCCCceEEeCChHHHHH---HHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcCCEEEEecC
Q 004952 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRC---TAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (722)
Q Consensus 354 ~~~~~a~il~TSGSTG~PKgV~~th~~~~~~---~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lv~~~~ 430 (722)
.|+.+|++.. +..+| .+..+|.+.+... ++......+++++|++..+.+-+..+- ..+|+++..|+..+..+.
T Consensus 89 ~pd~~Al~~~-~~~~~--~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~v-va~lA~~~~Gav~vpl~~ 164 (652)
T 1pg4_A 89 NGDRTAIIWE-GDDTS--QSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAA-VAMLACARIGAVHSVIFG 164 (652)
T ss_dssp HTTSEEEEEE-CSSTT--CEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHH-HHHHHHHHHTCEEEECCT
T ss_pred CCCceEEEEE-cCCCC--ceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHH-HHHHHHHHcCcEEEecCC
Confidence 4577887643 22222 3456888776443 344445578999999999888776543 447799999999999887
Q ss_pred CCChhhHHHHHHHhCCcEEechh
Q 004952 431 SPLERSFGKFVQDAGVTVLGTVP 453 (722)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P 453 (722)
...++.+...+++.++.++++..
T Consensus 165 ~~~~~~l~~~l~~~~~~~li~~~ 187 (652)
T 1pg4_A 165 GFSPEAVAGCIIDSSSRLVITAD 187 (652)
T ss_dssp TSCHHHHHHHHHHHTCSEEEEES
T ss_pred CCCHHHHHHHHHhcCCCEEEEcC
Confidence 77888999999999999988753
No 67
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=65.36 E-value=31 Score=37.83 Aligned_cols=101 Identities=10% Similarity=0.023 Sum_probs=72.6
Q ss_pred CCCCeEEEEcCCCCCCCCceEEeCChHHHH---HHHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcCCEEEEecC
Q 004952 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIR---CTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (722)
Q Consensus 354 ~~~~~a~il~TSGSTG~PKgV~~th~~~~~---~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lv~~~~ 430 (722)
.|+.+|++....+ .+-.+|.+.+.. .++......++.++|++....+-+..+- ..+|+++..|+..+..+.
T Consensus 24 ~p~~~a~~~~~~~-----~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~-~~~lA~~~~G~~~vpl~~ 97 (590)
T 3kxw_A 24 SPNKKSCTFLNKE-----LEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLI-QAFLGCLYAGCIAVPIYP 97 (590)
T ss_dssp CTTSEEEEEEETT-----EEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH-HHHHHHHHTTCEEEEECC
T ss_pred CCCCeEEEEEcCC-----eeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHH-HHHHHHHHhCcEEEEecC
Confidence 5678887654411 345788887744 3444445678999999998887775543 447799999999998865
Q ss_pred CC---ChhhHHHHHHHhCCcEEechhHHHHHHH
Q 004952 431 SP---LERSFGKFVQDAGVTVLGTVPSLVKAWR 460 (722)
Q Consensus 431 ~~---~~~~l~~~i~~~~vt~l~~~P~~l~~l~ 460 (722)
.. ..+.+...++..++.++...+.....+.
T Consensus 98 ~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 130 (590)
T 3kxw_A 98 PAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFT 130 (590)
T ss_dssp CCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHC
T ss_pred CCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHH
Confidence 43 2356788899999999999888776653
No 68
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=63.13 E-value=21 Score=38.93 Aligned_cols=84 Identities=7% Similarity=-0.023 Sum_probs=64.0
Q ss_pred EEeCChHHHHHH---HHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcCCEEEEecCCCChhhHHHHHHHhCCcEEe
Q 004952 374 IPWTQLSSIRCT---AEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLG 450 (722)
Q Consensus 374 V~~th~~~~~~~---~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~ 450 (722)
..+|.+.+...+ +......++.++|++....+-+...- ..+|+++..|+..+..+.....+++...+++.++.+++
T Consensus 51 ~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~-~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi 129 (548)
T 2d1s_A 51 VDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFF-IPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVF 129 (548)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTH-HHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEE
T ss_pred CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHH-HHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEE
Confidence 357887764443 33344578999999998888776544 34679999999999998777788999999999999998
Q ss_pred chhHHHHH
Q 004952 451 TVPSLVKA 458 (722)
Q Consensus 451 ~~P~~l~~ 458 (722)
+.+.....
T Consensus 130 ~~~~~~~~ 137 (548)
T 2d1s_A 130 SSKKGLDK 137 (548)
T ss_dssp ECTTTHHH
T ss_pred EcHHHHHH
Confidence 87665443
No 69
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=62.24 E-value=25 Score=38.25 Aligned_cols=90 Identities=14% Similarity=0.041 Sum_probs=66.6
Q ss_pred CCCCeEEEEcCCCCCCCCceEEeCChHHHHH---HHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcCCEEEEecC
Q 004952 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRC---TAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (722)
Q Consensus 354 ~~~~~a~il~TSGSTG~PKgV~~th~~~~~~---~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lv~~~~ 430 (722)
.|+.+|++. + +..+|.+.+... ++......++.++|++....+-+..+- ..+|+++..|+..+..+.
T Consensus 38 ~p~~~A~~~---~------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~-~~~lA~~~~Ga~~vpl~~ 107 (539)
T 1mdb_A 38 YGDRIAITC---G------NTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFF-EVIFALFRLGALPVFALP 107 (539)
T ss_dssp HTTSEEEEE---T------TEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHH-HHHHHHHHHTCEEEECCT
T ss_pred CCCCEEEEe---C------CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHH-HHHHHHHHcCeEEecCCC
Confidence 457777763 1 246788776443 334445578999999998887765543 347799999999988877
Q ss_pred CCChhhHHHHHHHhCCcEEechh
Q 004952 431 SPLERSFGKFVQDAGVTVLGTVP 453 (722)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P 453 (722)
....+++...++..++.+++..+
T Consensus 108 ~~~~~~l~~~l~~~~~~~vi~~~ 130 (539)
T 1mdb_A 108 SHRSSEITYFCEFAEAAAYIIPD 130 (539)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEES
T ss_pred CCCHHHHHHHHHhCCCCEEEecc
Confidence 77778899999999999988765
No 70
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=60.26 E-value=25 Score=37.91 Aligned_cols=90 Identities=10% Similarity=-0.105 Sum_probs=65.5
Q ss_pred CCCCeEEEEcCCCCCCCCceEEeCChHHHHH---HHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcCCEEEEecC
Q 004952 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRC---TAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (722)
Q Consensus 354 ~~~~~a~il~TSGSTG~PKgV~~th~~~~~~---~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lv~~~~ 430 (722)
.|+.+|++.. +-.+|.+.+... ++......++.++|++....+-+...- ..+|+++..|+..+..+.
T Consensus 17 ~p~~~a~~~~---------~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~-~~~lA~~~~G~v~vpl~~ 86 (521)
T 3l8c_A 17 QADFPVYDCL---------GERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDML-ATFVALTKSGHAYIPVDV 86 (521)
T ss_dssp STTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHH-HHHHHHHHTTCCEEEEET
T ss_pred CCCCcceecC---------CCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHH-HHHHHHHHhCCEEEecCc
Confidence 4567776531 235788776443 344445678999999988777665443 346789999999999887
Q ss_pred CCChhhHHHHHHHhCCcEEechh
Q 004952 431 SPLERSFGKFVQDAGVTVLGTVP 453 (722)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P 453 (722)
....+.+...++..++.+++...
T Consensus 87 ~~~~~~l~~il~~~~~~~ii~~~ 109 (521)
T 3l8c_A 87 HSAPERILAIIEIAKPSLIIAIE 109 (521)
T ss_dssp TSCHHHHHHHHHHSCCSEEEESS
T ss_pred cccHHHHHHHHHhCCCCEEEecC
Confidence 77788999999999999887643
No 71
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=58.50 E-value=31 Score=40.77 Aligned_cols=96 Identities=14% Similarity=-0.001 Sum_probs=71.3
Q ss_pred CCCCCeEEEEcCCCCCCCCceEEeCChHHHH---HHHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcCCEEEEec
Q 004952 353 NPVDAVVNILFSSGTTGEPKAIPWTQLSSIR---CTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQ 429 (722)
Q Consensus 353 ~~~~~~a~il~TSGSTG~PKgV~~th~~~~~---~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lv~~~ 429 (722)
..|+.+|++.-. +| ..+|.+.+.. .++......++.++|++....+-+..+- ..+|+++..|+..+..+
T Consensus 73 ~~pd~~Al~~~~---~~----~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~-v~~lA~~~~Ga~~vpl~ 144 (979)
T 3tsy_A 73 EFATKPCLINGP---TG----HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFV-LSFLAASFRGATATAAN 144 (979)
T ss_dssp GTTTSEEEEETT---TC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHH-HHHHHHHHHTCEEEEEC
T ss_pred hCCCCeEEEECC---CC----cEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHH-HHHHHHHHcCCEEEeeC
Confidence 357888876432 22 4578877644 3444445678999999998888775443 44779999999999998
Q ss_pred CCCChhhHHHHHHHhCCcEEechhHHH
Q 004952 430 GSPLERSFGKFVQDAGVTVLGTVPSLV 456 (722)
Q Consensus 430 ~~~~~~~l~~~i~~~~vt~l~~~P~~l 456 (722)
....++++...+++.++.++++.+...
T Consensus 145 ~~~~~~~l~~~l~~~~~~~vi~~~~~~ 171 (979)
T 3tsy_A 145 PFFTPAEIAKQAKASNTKLIITEARYV 171 (979)
T ss_dssp TTSCHHHHHHHHHHHTEEEEEECSTTT
T ss_pred CCCCHHHHHHHHHHcCCeEEEEChHHH
Confidence 777888999999999999998876543
No 72
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=57.06 E-value=29 Score=37.32 Aligned_cols=89 Identities=9% Similarity=-0.085 Sum_probs=64.5
Q ss_pred CCCCeEEEEcCCCCCCCCceEEeCChHHHHH---HHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcCCEEEEecC
Q 004952 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRC---TAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (722)
Q Consensus 354 ~~~~~a~il~TSGSTG~PKgV~~th~~~~~~---~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lv~~~~ 430 (722)
.|+.+|++.. +-.+|.+.+... ++......++.++|++....+-+... +..+|+++..|+..+..+.
T Consensus 14 ~p~~~A~~~~---------~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~-~~~~la~~~~G~v~vpl~~ 83 (512)
T 3fce_A 14 TPDQTAFVWR---------DAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEM-IINFLGCVKAGHAYIPVDL 83 (512)
T ss_dssp STTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHH-HHHHHHHHHTTCCEEEEET
T ss_pred CCCceEEEeC---------CceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHH-HHHHHHHHHhCCEEEeeCC
Confidence 4577777531 135788776443 33344456889999988877666543 3447799999999999887
Q ss_pred CCChhhHHHHHHHhCCcEEech
Q 004952 431 SPLERSFGKFVQDAGVTVLGTV 452 (722)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~ 452 (722)
....+++...++..++.+++..
T Consensus 84 ~~~~~~l~~il~~~~~~~~i~~ 105 (512)
T 3fce_A 84 SIPADRVQRIAENSGAKLLLSA 105 (512)
T ss_dssp TSCHHHHHHHHHHSCCCEEEES
T ss_pred CCcHHHHHHHHHhcCCCEEEec
Confidence 7778899999999999888754
No 73
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=52.33 E-value=34 Score=36.56 Aligned_cols=90 Identities=6% Similarity=-0.061 Sum_probs=64.9
Q ss_pred CCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcCCEEEEecCCCC
Q 004952 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPL 433 (722)
Q Consensus 354 ~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lv~~~~~~~ 433 (722)
.|+.+|++. + +-.+|.+.+...+......+.-.++|++....+-+..+- ..+|+++..|+..+..+....
T Consensus 14 ~pd~~Al~~---~------~~~~Ty~eL~~~~~~lA~~L~~~~gd~V~i~~~n~~e~~-~~~lA~~~~Gav~vpl~~~~~ 83 (501)
T 3ipl_A 14 NGHHIAITD---G------QESYTYQNLYCEASLLAKRLKAYQQSRVGLYIDNSIQSI-ILIHACWLANIEIAMINTRLT 83 (501)
T ss_dssp HTTSEEEEC---S------SCEEEHHHHHHHHHHHHHHHHTTCCSEEEEECCSSHHHH-HHHHHHHHTTCEEEECCTTSC
T ss_pred cCCceEEEe---C------CcEEEHHHHHHHHHHHHHHHHHcCCCEEEEEcCCCHHHH-HHHHHHHHcCCEEEecCccCC
Confidence 457777652 1 236888887655554444433238999988888765543 447799999999999987777
Q ss_pred hhhHHHHHHHhCCcEEechh
Q 004952 434 ERSFGKFVQDAGVTVLGTVP 453 (722)
Q Consensus 434 ~~~l~~~i~~~~vt~l~~~P 453 (722)
.+.+...++..++.++++..
T Consensus 84 ~~~l~~~l~~~~~~~li~~~ 103 (501)
T 3ipl_A 84 PNEMTNQMRSIDVQLIFCTL 103 (501)
T ss_dssp HHHHHHHHHHTTCCEEEESS
T ss_pred HHHHHHHHHhcCCCEEEEcc
Confidence 88999999999999887653
No 74
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=49.52 E-value=39 Score=34.36 Aligned_cols=99 Identities=10% Similarity=0.053 Sum_probs=66.1
Q ss_pred CCCceEEEEecCCCCCCcc--ceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCC--CHHHHHHHHHHHHhCcEEEec
Q 004952 189 EDNTVAIVWREDRCDESAV--NLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPM--TVRAVIIYLAIILAGYVVVSI 263 (722)
Q Consensus 189 ~pd~~Al~~~~~~~~~~~~--~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~--s~~~vv~~lA~~~aGa~~vpl 263 (722)
.++.+|.+.... |.+|.. ..+|.+.+...+..+++.+... +.++|++..++|- ..--+...++++..|+..++.
T Consensus 89 ~~~~~a~i~~TS-GTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~ 167 (369)
T 3hgu_A 89 PADSHPQVYESG-GTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSI 167 (369)
T ss_dssp CTTCCCEEEEEC-C---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECC
T ss_pred CccccEEEEECC-CCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECc
Confidence 456666654332 233333 3578888888887777777777 8999999999886 223334455568999966654
Q ss_pred CCCCCHH-----------------------HHHHHHHhcCceEEEeccch
Q 004952 264 ADSFAAR-----------------------EIATRLRVSKAKGIFTQDFI 290 (722)
Q Consensus 264 ~p~~~~~-----------------------~l~~~l~~~~~~~il~~~~~ 290 (722)
+ +.+. ++...+++.++.+++.....
T Consensus 168 ~--~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~ 215 (369)
T 3hgu_A 168 D--IDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPV 215 (369)
T ss_dssp C--CCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHH
T ss_pred c--CChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHH
Confidence 3 3444 66668999999999887643
No 75
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=49.46 E-value=51 Score=36.51 Aligned_cols=89 Identities=4% Similarity=-0.164 Sum_probs=65.7
Q ss_pred CCCCeEEEEcCCCCCCCCceEEeCChHHHH---HHHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcCCEEEEecC
Q 004952 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIR---CTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (722)
Q Consensus 354 ~~~~~a~il~TSGSTG~PKgV~~th~~~~~---~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lv~~~~ 430 (722)
.|+.+|++. . +-.+|.+.+.. .++......++.+++++....+-+..+- ..+|+++..|+..+..+.
T Consensus 40 ~Pd~~Av~~-~--------~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~v-va~lailkaGa~~vpld~ 109 (620)
T 4dg8_A 40 HPHREAIRD-R--------FGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESI-TCLLAILLSGHHYLYIDL 109 (620)
T ss_dssp CTTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHH-HHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEEc-C--------CCcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHH-HHHHHHHHhCCEEEeeCc
Confidence 567787663 1 22578877644 4444445568999999988887775543 347799999999999887
Q ss_pred CCChhhHHHHHHHhCCcEEech
Q 004952 431 SPLERSFGKFVQDAGVTVLGTV 452 (722)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~ 452 (722)
....+++...+++.++.++...
T Consensus 110 ~~p~~~l~~il~~~~~~~vl~~ 131 (620)
T 4dg8_A 110 KQPAAWNAELCRQVDCRLILDC 131 (620)
T ss_dssp TSCHHHHHHHHHHHTEEEEEEC
T ss_pred cChHHHHHHHHHhCCCcEEEec
Confidence 7777889999999999888743
No 76
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=49.37 E-value=66 Score=34.89 Aligned_cols=97 Identities=13% Similarity=0.077 Sum_probs=66.0
Q ss_pred CCCCeEEEEcCCCCCCCCc--eEEeCChHHHHH---HHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcCCEEEEe
Q 004952 354 PVDAVVNILFSSGTTGEPK--AIPWTQLSSIRC---TAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALY 428 (722)
Q Consensus 354 ~~~~~a~il~TSGSTG~PK--gV~~th~~~~~~---~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lv~~ 428 (722)
.|+.+|++... |..+..+ .-.+|.+.+... ++......++ ++|++...++-+..+- ..+|+++..|+..+..
T Consensus 33 ~p~~~A~~~~~-~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~-~~~lA~~~~Gav~vpl 109 (562)
T 3ite_A 33 HPEWKAVEVAT-GFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAF-AIIVGIMKSGNTYVPI 109 (562)
T ss_dssp CTTSEEEEEEE-CC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHH-HHHHHHHHTTCEEEEC
T ss_pred CCCchhhhccc-ccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHH-HHHHHHHHhCCEEEec
Confidence 56778876442 3333332 356788776443 3333344577 7999988887776543 3477999999999998
Q ss_pred cCCCChhhHHHHHHHhCCcEEechh
Q 004952 429 QGSPLERSFGKFVQDAGVTVLGTVP 453 (722)
Q Consensus 429 ~~~~~~~~l~~~i~~~~vt~l~~~P 453 (722)
+.....+++...++..++.+++...
T Consensus 110 ~~~~~~~~l~~~l~~~~~~~~i~~~ 134 (562)
T 3ite_A 110 EAGLPNDRKSFLLRDSRAAMAFVCD 134 (562)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECT
T ss_pred CCcCHHHHHHHHHHhcCCCEEEEcc
Confidence 8777778899999999999877643
No 77
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=47.90 E-value=1.3e+02 Score=27.92 Aligned_cols=91 Identities=11% Similarity=-0.040 Sum_probs=53.2
Q ss_pred CCEEEEecCcc--ccchhHHHHHHh-hcCCEEEEecCCCChhhHHHHHHHhCCcEEec------hhHH--HHHHHhcCCC
Q 004952 397 GDVYCWPTNLG--WVMGPVILFSSF-LNGATLALYQGSPLERSFGKFVQDAGVTVLGT------VPSL--VKAWRNTNCL 465 (722)
Q Consensus 397 ~d~~l~~~~~~--~~~~~~~~~~~L-~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~------~P~~--l~~l~~~~~~ 465 (722)
..+++..++.+ |+.|...+-..| .+|-.++.......++.+.+.++++++.++.+ ++++ ++.+++....
T Consensus 92 ~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~ 171 (215)
T 3ezx_A 92 AGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLNE 171 (215)
T ss_dssp CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHHH
T ss_pred CCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHHH
Confidence 34555544443 888875433333 46777776666667889999999999987766 3332 2222222111
Q ss_pred CCCCccceeEEEeecCCCCcchHH
Q 004952 466 EGLDWTKIRSFASTGETSNVDDDL 489 (722)
Q Consensus 466 ~~~~l~~Lr~i~~~Ge~l~~~~~~ 489 (722)
... -..++ +++||.+++++..+
T Consensus 172 ~~~-~~~v~-v~vGG~~~~~~~a~ 193 (215)
T 3ezx_A 172 EKL-RDSVK-CMFGGAPVSDKWIE 193 (215)
T ss_dssp TTC-GGGSE-EEEESSSCCHHHHH
T ss_pred cCC-CCCCE-EEEECCCCCHHHHH
Confidence 111 01333 78899988865443
No 78
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=43.61 E-value=71 Score=34.67 Aligned_cols=86 Identities=9% Similarity=-0.049 Sum_probs=63.1
Q ss_pred eEEeCChHHHHH---HHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcCCEEEEecCCCC-------hhhHHHHHH
Q 004952 373 AIPWTQLSSIRC---TAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPL-------ERSFGKFVQ 442 (722)
Q Consensus 373 gV~~th~~~~~~---~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lv~~~~~~~-------~~~l~~~i~ 442 (722)
+-.+|.+.+... ++......++.++|++....+-+..+- ..+|+++..|+..+..+.... ...+...++
T Consensus 47 ~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~-~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~ 125 (576)
T 3gqw_A 47 EDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFV-EAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLA 125 (576)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHHH-HHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHH
T ss_pred eeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHH-HHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHH
Confidence 357888876444 334445578999999998888776543 347799999999998865443 467888899
Q ss_pred HhCCcEEechhHHHHHH
Q 004952 443 DAGVTVLGTVPSLVKAW 459 (722)
Q Consensus 443 ~~~vt~l~~~P~~l~~l 459 (722)
..++..++........+
T Consensus 126 ~~~~~~ii~~~~~~~~~ 142 (576)
T 3gqw_A 126 SCQPAAIITGDEWLPLV 142 (576)
T ss_dssp HHCCSEEEECGGGHHHH
T ss_pred hcCCCEEEecHHHHHHH
Confidence 99999999877655544
No 79
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=43.58 E-value=61 Score=35.79 Aligned_cols=89 Identities=12% Similarity=0.009 Sum_probs=66.4
Q ss_pred CCCeEEEEcCCCCCCCCceEEeCChHHHH---HHHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcCCEEEEecCC
Q 004952 355 VDAVVNILFSSGTTGEPKAIPWTQLSSIR---CTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS 431 (722)
Q Consensus 355 ~~~~a~il~TSGSTG~PKgV~~th~~~~~---~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lv~~~~~ 431 (722)
|+.+|.+- | +-.+|.+.+.. .++......++++++++....+-+..+- ..+|+++..|+..+..+..
T Consensus 39 pd~~Av~~---~------~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~v-va~lA~l~aG~~~vpl~~~ 108 (617)
T 3rg2_A 39 SDSIAVID---G------ERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELY-ITFFALLKLGVAPVLALFS 108 (617)
T ss_dssp CCSEEEEE---T------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH-HHHHHHHHHTCEEEEECTT
T ss_pred CCCeEEec---C------CceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHH-HHHHHHHhcCeEEccCCcc
Confidence 57777762 1 24578877644 4444445578999999998887775543 3477999999999988777
Q ss_pred CChhhHHHHHHHhCCcEEechh
Q 004952 432 PLERSFGKFVQDAGVTVLGTVP 453 (722)
Q Consensus 432 ~~~~~l~~~i~~~~vt~l~~~P 453 (722)
....++...++..++.++....
T Consensus 109 ~~~~~l~~~l~~~~~~~vl~~~ 130 (617)
T 3rg2_A 109 HQRSELNAYASQIEPALLIADR 130 (617)
T ss_dssp CCHHHHHHHHHHHCCSEEEEET
T ss_pred ccHHHHHHHHhhcCceEEEecc
Confidence 7778899999999999988754
No 80
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=38.18 E-value=83 Score=33.62 Aligned_cols=88 Identities=11% Similarity=-0.051 Sum_probs=62.5
Q ss_pred CCCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhh----hhcCCCCCCEEEEecCccccchhHHHHHHhhcCCEEEEec
Q 004952 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW----AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQ 429 (722)
Q Consensus 354 ~~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~----~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lv~~~ 429 (722)
.|+.+|++. .+-.+|.+.+...+.... ...+..+++++....+-+... +..+|+++..|+..+..+
T Consensus 14 ~p~~~Al~~---------~~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~-~~~~lA~~~~G~~~vpl~ 83 (511)
T 3e7w_A 14 YPQTDAFRS---------QGQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHM-IVSFLGSVKAGHPYIPVD 83 (511)
T ss_dssp STTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHH-HHHHHHHHHHTCCEEEEE
T ss_pred CCCCeEEEc---------CCceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHH-HHHHHHHHHhCCEEEecC
Confidence 457777653 134688887755443332 234666788887776655433 344779999999999998
Q ss_pred CCCChhhHHHHHHHhCCcEEec
Q 004952 430 GSPLERSFGKFVQDAGVTVLGT 451 (722)
Q Consensus 430 ~~~~~~~l~~~i~~~~vt~l~~ 451 (722)
.....+++...++..++++++.
T Consensus 84 ~~~~~~~l~~~l~~~~~~~li~ 105 (511)
T 3e7w_A 84 LSIPSERIAKIIESSGAELLIH 105 (511)
T ss_dssp TTSCHHHHHHHHHHHTCCEEEE
T ss_pred CCChHHHHHHHHHhCCCCEEEe
Confidence 7778889999999999999886
No 81
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=35.76 E-value=86 Score=38.24 Aligned_cols=92 Identities=14% Similarity=0.044 Sum_probs=68.3
Q ss_pred CCCCeEEEEcCCCCCCCCceEEeCChHHHH---HHHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcCCEEEEecC
Q 004952 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIR---CTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (722)
Q Consensus 354 ~~~~~a~il~TSGSTG~PKgV~~th~~~~~---~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lv~~~~ 430 (722)
.|+.+|.+ +. +-.+|.+.+.. .++......++++++++....+-+..+- ..+++.+..|+..|..+.
T Consensus 477 ~p~~~Av~-~~--------~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~v-v~~lailkaG~~~vpldp 546 (1304)
T 2vsq_A 477 NPDAPALT-YS--------GQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELV-IGILGVLKAGAAYLPVDP 546 (1304)
T ss_dssp CTTSEEEE-SS--------SCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHH-HHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEE-EC--------CeeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHH-HHHHHHHHHCCEEEEECC
Confidence 56777765 21 23578777643 4444445678999999998888776554 347799999999999887
Q ss_pred CCChhhHHHHHHHhCCcEEechhHH
Q 004952 431 SPLERSFGKFVQDAGVTVLGTVPSL 455 (722)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P~~ 455 (722)
....+++...+++.++.++.+.+..
T Consensus 547 ~~p~~rl~~il~~~~~~~vl~~~~~ 571 (1304)
T 2vsq_A 547 KLPEDRISYMLADSAAACLLTHQEM 571 (1304)
T ss_dssp TSCHHHHHHHHHHHTCCEEEECSTT
T ss_pred CCHHHHHHHHHHHcCCCEEEECcch
Confidence 7777889999999999998876543
No 82
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=35.74 E-value=91 Score=33.30 Aligned_cols=88 Identities=10% Similarity=0.068 Sum_probs=63.0
Q ss_pred CCCeEEEEcCCCCCCCCceEEeCChHHHHHHHHhhhhcCCCCCCEEEEecCccccchhHHHHHHhhcCCEEEEecCCCCh
Q 004952 355 VDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLE 434 (722)
Q Consensus 355 ~~~~a~il~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lv~~~~~~~~ 434 (722)
+|.+|++. .+-.+|.+.+...+......+ ..++++....+-+...- ..+|+++..|+..+..+.....
T Consensus 37 ~d~~Al~~---------~~~~~Ty~eL~~~~~~~A~~L--~~~~~V~i~~~~~~~~~-~~~la~~~~Ga~~vpl~~~~~~ 104 (505)
T 3nyq_A 37 ADRPALRF---------GERSLTYAELAAAAGATAGRI--GGAGRVAVWATPAMETG-VAVVAALLAGVAAVPLNPKSGD 104 (505)
T ss_dssp GGSEEEEE---------TTEEEEHHHHHHHHHHHHTTC--C---CEEEECCSSHHHH-HHHHHHHHHTCCEEEECTTCCH
T ss_pred CCCeEEEE---------CCeeeeHHHHHHHHHHHHhhc--cCCCEEEEEcCCCHHHH-HHHHHHHHhCCEEEEcCCCCCH
Confidence 34777653 134688888877666555443 45788887777665543 3477999999999999877778
Q ss_pred hhHHHHHHHhCCcEEechhH
Q 004952 435 RSFGKFVQDAGVTVLGTVPS 454 (722)
Q Consensus 435 ~~l~~~i~~~~vt~l~~~P~ 454 (722)
+++...+++.++.+++..+.
T Consensus 105 ~~l~~il~~~~~~~vi~~~~ 124 (505)
T 3nyq_A 105 KELAHILSDSAPSLVLAPPD 124 (505)
T ss_dssp HHHHHHHHHHCCSEEEECTT
T ss_pred HHHHHHHHHCCCCEEEECCc
Confidence 89999999999999987653
No 83
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=32.74 E-value=1.1e+02 Score=31.01 Aligned_cols=92 Identities=16% Similarity=0.186 Sum_probs=63.9
Q ss_pred CCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCCCC
Q 004952 190 DNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268 (722)
Q Consensus 190 pd~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~p~~~ 268 (722)
.-++-+-.++.+. +=||+. .-..+.+.....+. +++|.+..+....+-.-+..-++|.+.|.-++.+-|...
T Consensus 49 G~~IylK~E~lnp------tGSfK~-RgA~~~i~~a~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~ 121 (344)
T 3vc3_A 49 GAYVAVKQEMMQP------TASIAD-RPAYAMITDAEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYT 121 (344)
T ss_dssp CSEEEEEEGGGST------TSBTTH-HHHHHHHHHHHHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTS
T ss_pred CCEEEEEecCCCC------CCCcHH-HHHHHHHHHHHHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCC
Confidence 4466666666532 334542 22234455555555 888887777888888888888999999987766666655
Q ss_pred HHHHHHHHHhcCceEEEecc
Q 004952 269 AREIATRLRVSKAKGIFTQD 288 (722)
Q Consensus 269 ~~~l~~~l~~~~~~~il~~~ 288 (722)
+..-...++..++++++++.
T Consensus 122 ~~~k~~~~~~~GA~Vv~v~~ 141 (344)
T 3vc3_A 122 SLERRVTMRAFGAELILTDP 141 (344)
T ss_dssp CHHHHHHHHHTTCEEEEECG
T ss_pred hHHHHHHHHHcCCEEEEECC
Confidence 55666788999999999865
No 84
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=31.84 E-value=1.4e+02 Score=29.95 Aligned_cols=70 Identities=21% Similarity=0.195 Sum_probs=42.6
Q ss_pred cCCCCEEEEEcCCCH------HHHHHHHHHH-HhCcEEEecCCC---------C---CHHHHHHHHHhcCceEEEeccch
Q 004952 230 FSKGDAIAIDMPMTV------RAVIIYLAII-LAGYVVVSIADS---------F---AAREIATRLRVSKAKGIFTQDFI 290 (722)
Q Consensus 230 v~~gd~V~l~~~~s~------~~vv~~lA~~-~aGa~~vpl~p~---------~---~~~~l~~~l~~~~~~~il~~~~~ 290 (722)
+++||+|+|++|.+. +.+-.-...+ ..|.-.+.-..- . .+++|..++.|-.++.|++..+-
T Consensus 9 L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rGG 88 (327)
T 4h1h_A 9 LKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVIGG 88 (327)
T ss_dssp CCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCCC
T ss_pred CCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcCCc
Confidence 789999999999853 2332333333 346555432221 1 24457778888999999998755
Q ss_pred hcCCccccc
Q 004952 291 LRGGRKFPL 299 (722)
Q Consensus 291 ~~~~~~~~~ 299 (722)
+...+.++.
T Consensus 89 ~g~~rlL~~ 97 (327)
T 4h1h_A 89 FNSNQLLPY 97 (327)
T ss_dssp SCGGGGGGG
T ss_pred hhHHHHhhh
Confidence 443344443
No 85
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=27.82 E-value=1.9e+02 Score=28.94 Aligned_cols=91 Identities=16% Similarity=0.131 Sum_probs=57.6
Q ss_pred CceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCCCCH
Q 004952 191 NTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269 (722)
Q Consensus 191 d~~Al~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-v~~gd~V~l~~~~s~~~vv~~lA~~~aGa~~vpl~p~~~~ 269 (722)
.++-+-.++.+. +=||+.-. ....+.....+- +++|+.|.+....+-.-...-++|.+.|.-++.+-|...+
T Consensus 35 ~~i~~K~E~~~p------tGSfK~R~-a~~~i~~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~ 107 (334)
T 3tbh_A 35 AKVVLKMECENP------MASVKDRL-GFAIYDKAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMS 107 (334)
T ss_dssp SEEEEEEGGGST------TSBTHHHH-HHHHHHHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSC
T ss_pred CEEEEEeCCCCC------ccCcHHHH-HHHHHHHHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCC
Confidence 456666655532 23454432 122333444444 6889987566666777777788888889876655555444
Q ss_pred HHHHHHHHhcCceEEEecc
Q 004952 270 REIATRLRVSKAKGIFTQD 288 (722)
Q Consensus 270 ~~l~~~l~~~~~~~il~~~ 288 (722)
..-..+++..++.+++++.
T Consensus 108 ~~k~~~~~~~GA~V~~~~~ 126 (334)
T 3tbh_A 108 LERRCLLRIFGAEVILTPA 126 (334)
T ss_dssp HHHHHHHHHTTCEEEEECG
T ss_pred HHHHHHHHHCCCEEEEECC
Confidence 4556678899999999975
No 86
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=27.06 E-value=1.8e+02 Score=29.13 Aligned_cols=70 Identities=17% Similarity=0.168 Sum_probs=43.7
Q ss_pred cCCCCEEEEEcCCCH------HHHHHHHHHHH-hCcEEEecCC---------CCC---HHHHHHHHHhcCceEEEeccch
Q 004952 230 FSKGDAIAIDMPMTV------RAVIIYLAIIL-AGYVVVSIAD---------SFA---AREIATRLRVSKAKGIFTQDFI 290 (722)
Q Consensus 230 v~~gd~V~l~~~~s~------~~vv~~lA~~~-aGa~~vpl~p---------~~~---~~~l~~~l~~~~~~~il~~~~~ 290 (722)
+++||+|+|++|.+. +.+-.-...++ .|.-++.-.. ..+ .++|..++.|-.+++|++..+-
T Consensus 9 L~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rGG 88 (331)
T 4e5s_A 9 LKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTLGG 88 (331)
T ss_dssp CCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCCC
T ss_pred CCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcccc
Confidence 789999999999875 23333344444 5666553321 112 3356667788899999998765
Q ss_pred hcCCccccc
Q 004952 291 LRGGRKFPL 299 (722)
Q Consensus 291 ~~~~~~~~~ 299 (722)
+...+.++.
T Consensus 89 ~g~~rlL~~ 97 (331)
T 4e5s_A 89 YNSNGLLKY 97 (331)
T ss_dssp SCGGGGGGG
T ss_pred ccHHHHHhh
Confidence 444444444
No 87
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=27.03 E-value=1.8e+02 Score=29.11 Aligned_cols=70 Identities=17% Similarity=0.216 Sum_probs=43.4
Q ss_pred cCCCCEEEEEcCCCH------HHHHHHHHHHH-hCcEEEecCC---------CCC---HHHHHHHHHhcCceEEEeccch
Q 004952 230 FSKGDAIAIDMPMTV------RAVIIYLAIIL-AGYVVVSIAD---------SFA---AREIATRLRVSKAKGIFTQDFI 290 (722)
Q Consensus 230 v~~gd~V~l~~~~s~------~~vv~~lA~~~-aGa~~vpl~p---------~~~---~~~l~~~l~~~~~~~il~~~~~ 290 (722)
+++||+|+|++|.+. +.+-.-...++ .|.-++.-.. ..+ .++|..++.|-.+++|++..+-
T Consensus 10 L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rGG 89 (336)
T 3sr3_A 10 LKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTIGG 89 (336)
T ss_dssp CCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESCCC
T ss_pred CCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEcccc
Confidence 789999999999983 22333333443 5666554211 112 3356667788899999998765
Q ss_pred hcCCccccc
Q 004952 291 LRGGRKFPL 299 (722)
Q Consensus 291 ~~~~~~~~~ 299 (722)
+...+.++.
T Consensus 90 ~g~~rlL~~ 98 (336)
T 3sr3_A 90 MNSNSLLPY 98 (336)
T ss_dssp SCGGGGGGG
T ss_pred ccHHHHhhh
Confidence 444444443
No 88
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=26.37 E-value=1.7e+02 Score=29.76 Aligned_cols=70 Identities=14% Similarity=0.086 Sum_probs=43.3
Q ss_pred cCCCCEEEEEcCCCH------HHHHHHHHHHH-hCcEEEecCCC---------CC---HHHHHHHHHhcCceEEEeccch
Q 004952 230 FSKGDAIAIDMPMTV------RAVIIYLAIIL-AGYVVVSIADS---------FA---AREIATRLRVSKAKGIFTQDFI 290 (722)
Q Consensus 230 v~~gd~V~l~~~~s~------~~vv~~lA~~~-aGa~~vpl~p~---------~~---~~~l~~~l~~~~~~~il~~~~~ 290 (722)
+++||+|+|++|.+. +.+-.-...++ .|.-++.-... .+ .++|..++.|-.+++|++..+-
T Consensus 40 Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~rGG 119 (371)
T 3tla_A 40 LAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTIGG 119 (371)
T ss_dssp CCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESCCC
T ss_pred CCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcccc
Confidence 899999999999974 22333333443 56665533221 12 3356667777889999998765
Q ss_pred hcCCccccc
Q 004952 291 LRGGRKFPL 299 (722)
Q Consensus 291 ~~~~~~~~~ 299 (722)
+...+.++.
T Consensus 120 yga~rlLp~ 128 (371)
T 3tla_A 120 DNSNSLLPF 128 (371)
T ss_dssp SCGGGGGGG
T ss_pred ccHHHHHhh
Confidence 444444444
No 89
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=25.99 E-value=1.1e+02 Score=23.02 Aligned_cols=47 Identities=19% Similarity=0.137 Sum_probs=33.0
Q ss_pred HHHHHHHhccCCCcceeEEEeecCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHh
Q 004952 625 VEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQS 683 (722)
Q Consensus 625 ~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~ 683 (722)
.++++.| +++|+|.+|..+.-+ .-+++-+.. .+.+++.+.+.++|..
T Consensus 16 ~~~~~~l-~~~peV~~~~~vtG~------~d~l~~v~~-----~d~~~l~~~~~~~l~~ 62 (83)
T 2zbc_A 16 DEVFERL-KSMSEVTEVHVVYGV------YDIVVKVEA-----DSMDKLKDFVTNTIRK 62 (83)
T ss_dssp HHHHHHH-TTCTTEEEEEECSSS------CSEEEEEEC-----SSHHHHHHHHHHTGGG
T ss_pred HHHHHHH-hCCCCeEEEEEEecc------CCEEEEEEE-----CCHHHHHHHHHHHhcC
Confidence 6888988 599999999876422 234555543 3468888888777754
No 90
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=25.90 E-value=88 Score=23.76 Aligned_cols=48 Identities=15% Similarity=0.092 Sum_probs=33.3
Q ss_pred hHHHHHHHhccCCCcceeEEEeecCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHh
Q 004952 624 SVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQS 683 (722)
Q Consensus 624 ~~eIE~~l~~~~p~V~~~~vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~ 683 (722)
..++++.| ++.|+|.+|..+.-+ .-+++-+..+ +.+++.+.+.+++..
T Consensus 15 ~~~~~~~l-~~~peV~e~~~vtG~------~D~ll~v~~~-----d~~~l~~~i~~~l~~ 62 (83)
T 2cvi_A 15 EREVMEKL-LAMPEVKEAYVVYGE------YDLIVKVETD-----TLKDLDQFITEKIRK 62 (83)
T ss_dssp HHHHHHHH-HTSTTEEEEEECBSS------CSEEEEEEES-----SHHHHHHHHHTTGGG
T ss_pred HHHHHHHH-hCCCCeeEEEEEccc------CCEEEEEEEC-----CHHHHHHHHHHHhcc
Confidence 37899998 599999999887532 2345555543 467888888766643
No 91
>1t90_A MMSDH, probable methylmalonate-semialdehyde dehydrogenase; oxidoreductase, NAD; HET: NAD; 2.50A {Bacillus subtilis}
Probab=25.72 E-value=2e+02 Score=30.54 Aligned_cols=78 Identities=14% Similarity=0.117 Sum_probs=48.7
Q ss_pred CCCEEEEecCccccchh--HHHHHHhhcCCEEEEecCCCCh---hhHHHHHHHhC-----CcEEechhHHHHHHHhcCCC
Q 004952 396 VGDVYCWPTNLGWVMGP--VILFSSFLNGATLALYQGSPLE---RSFGKFVQDAG-----VTVLGTVPSLVKAWRNTNCL 465 (722)
Q Consensus 396 ~~d~~l~~~~~~~~~~~--~~~~~~L~~G~~lv~~~~~~~~---~~l~~~i~~~~-----vt~l~~~P~~l~~l~~~~~~ 465 (722)
|-.+++..+|++|-..+ +-+..+|++|.++|+-+....+ ..+.+++.+.+ ++++...+..-..|+.+
T Consensus 141 P~GVV~~I~PwN~P~~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~~aGlP~gvv~vv~g~~~~~~~L~~~--- 217 (486)
T 1t90_A 141 PIGVVGGIAPFNFPMMVPCWMFPMAIALGNTFILKPSERTPLLTEKLVELFEKAGLPKGVFNVVYGAHDVVNGILEH--- 217 (486)
T ss_dssp ECSEEEEECCSSCTTHHHHHHHHHHHHTTCEEEEECCSSSCHHHHHHHHHHHHTTCCTTSEEECCCSHHHHHHHHHC---
T ss_pred ccCEEEEECCCchhHHHHHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhC---
Confidence 34578888898876554 5577899999999997654433 35667777653 12333333344555543
Q ss_pred CCCCccceeEEEeecC
Q 004952 466 EGLDWTKIRSFASTGE 481 (722)
Q Consensus 466 ~~~~l~~Lr~i~~~Ge 481 (722)
+.++.|.+.|.
T Consensus 218 -----~~v~~I~fTGS 228 (486)
T 1t90_A 218 -----PEIKAISFVGS 228 (486)
T ss_dssp -----TTEEEEEEESC
T ss_pred -----CCCCEEEEeCC
Confidence 34666766664
No 92
>4e4g_A Methylmalonate-semialdehyde dehydrogenase; structural genomics, protein structure INI nysgrc, PSI-biology; 2.90A {Sinorhizobium meliloti}
Probab=25.14 E-value=2e+02 Score=30.90 Aligned_cols=77 Identities=13% Similarity=0.088 Sum_probs=47.8
Q ss_pred CCEEEEecCccccchh--HHHHHHhhcCCEEEEecCCCCh---hhHHHHHHHhC-----CcEEechhHHHHHHHhcCCCC
Q 004952 397 GDVYCWPTNLGWVMGP--VILFSSFLNGATLALYQGSPLE---RSFGKFVQDAG-----VTVLGTVPSLVKAWRNTNCLE 466 (722)
Q Consensus 397 ~d~~l~~~~~~~~~~~--~~~~~~L~~G~~lv~~~~~~~~---~~l~~~i~~~~-----vt~l~~~P~~l~~l~~~~~~~ 466 (722)
-.+++..+|++|-..+ +-+..+|++|.++|+-+....+ ..+.+++.+.+ ++++.........|+.+
T Consensus 163 ~GVV~~I~PwN~P~~~~~~~~a~ALaaGN~VVlKpse~tp~t~~~l~~l~~eaGlP~gvv~vv~g~~~~~~~L~~~---- 238 (521)
T 4e4g_A 163 VGIGAGITPFNFPGMIPMWMFAPAIACGNAFILKPSERDPSVPIRLAELMIEAGLPAGILNVVNGDKGAVDAILTH---- 238 (521)
T ss_dssp CCEEEEECCSSCTTHHHHHHHHHHHHTTCEEEEECCTTSTHHHHHHHHHHHHTTCCTTSEEECCCCHHHHHHHHTC----
T ss_pred CcEEEEECCCcchHHHHHHHHHHHHHcCCEEEEECCCcchHHHHHHHHHHHHhCCCcCeEEEEeCChHHHHHHHhC----
Confidence 3467788888877665 4577889999999997654433 35667777653 23333334444566543
Q ss_pred CCCccceeEEEeecC
Q 004952 467 GLDWTKIRSFASTGE 481 (722)
Q Consensus 467 ~~~l~~Lr~i~~~Ge 481 (722)
+.++.|.+.|.
T Consensus 239 ----p~vd~I~FTGS 249 (521)
T 4e4g_A 239 ----PDIAAVSFVGS 249 (521)
T ss_dssp ----TTCCEEEEESC
T ss_pred ----CCcCEEEEECC
Confidence 23556666664
No 93
>3ju8_A Succinylglutamic semialdehyde dehydrogenase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: NAD; 1.82A {Pseudomonas aeruginosa}
Probab=21.76 E-value=2.5e+02 Score=29.82 Aligned_cols=77 Identities=12% Similarity=-0.012 Sum_probs=46.3
Q ss_pred CCCEEEEecCccccchh--HHHHHHhhcCCEEEEecCCCChh---hHHHHHHHhC-----CcEEechhHHHHHHHhcCCC
Q 004952 396 VGDVYCWPTNLGWVMGP--VILFSSFLNGATLALYQGSPLER---SFGKFVQDAG-----VTVLGTVPSLVKAWRNTNCL 465 (722)
Q Consensus 396 ~~d~~l~~~~~~~~~~~--~~~~~~L~~G~~lv~~~~~~~~~---~l~~~i~~~~-----vt~l~~~P~~l~~l~~~~~~ 465 (722)
|-.+++..+|++|-..+ +-+..+|.+|.++|+-+....+. .+.+++.+.+ ++++...+..-..|+.+
T Consensus 139 P~GVv~~I~PwN~P~~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~~aGlP~gvv~vv~g~~~~~~~L~~~--- 215 (490)
T 3ju8_A 139 PHGVVAVFGPYNFPGHLPNGHIVPALLAGNCVVFKPSELTPKVAELTLKAWIQAGLPAGVLNLVQGGRETGVALAAH--- 215 (490)
T ss_dssp ECSEEEEECCSSSTTHHHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHHTTCCTTTEEECCCSHHHHHHHHTC---
T ss_pred CCCEEEEECCCcchHHHHHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHHhCcCcCeEEEEeCCHHHHHHHHhC---
Confidence 33577888888877665 55778899999999977544432 4556666643 23333333444555543
Q ss_pred CCCCccceeEEEeec
Q 004952 466 EGLDWTKIRSFASTG 480 (722)
Q Consensus 466 ~~~~l~~Lr~i~~~G 480 (722)
+.++.|.+.|
T Consensus 216 -----~~v~~V~fTG 225 (490)
T 3ju8_A 216 -----RGLDGLFFTG 225 (490)
T ss_dssp -----TTCSEEEEES
T ss_pred -----CCcCEEEEEC
Confidence 2355565555
No 94
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=21.55 E-value=3.5e+02 Score=28.00 Aligned_cols=57 Identities=11% Similarity=0.103 Sum_probs=33.4
Q ss_pred cCCCCEEEEEcCCCHHHHHHHH-HHHHhCcEEEecCCCCCHHHHHHHHHhcCceEEEecc
Q 004952 230 FSKGDAIAIDMPMTVRAVIIYL-AIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 288 (722)
Q Consensus 230 v~~gd~V~l~~~~s~~~vv~~l-A~~~aGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~ 288 (722)
+++||.|.+.-+.-....-.+- .+.+.|+.++.++.+ ..+.++..++. +.++|++..
T Consensus 118 ~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~-d~~~l~~ai~~-~t~~v~~e~ 175 (430)
T 3ri6_A 118 ARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVM-DSLAVEHACDE-TTKLLFLET 175 (430)
T ss_dssp CCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTT-CHHHHHHHCCT-TEEEEEEES
T ss_pred hCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCC-CHHHHHHhhCC-CCeEEEEEC
Confidence 6778887666555444333322 455667777766655 55666666543 556666543
No 95
>3etf_A Putative succinate-semialdehyde dehydrogenase; center for ST genomics of infectious diseases, oxidoreductase, csgid; 1.85A {Salmonella typhimurium} PDB: 3efv_A
Probab=21.05 E-value=3e+02 Score=28.88 Aligned_cols=76 Identities=14% Similarity=0.128 Sum_probs=46.9
Q ss_pred CEEEEecCccccchh--HHHHHHhhcCCEEEEecCCCChh---hHHHHHHHhC-----CcEEechhHHHHHHHhcCCCCC
Q 004952 398 DVYCWPTNLGWVMGP--VILFSSFLNGATLALYQGSPLER---SFGKFVQDAG-----VTVLGTVPSLVKAWRNTNCLEG 467 (722)
Q Consensus 398 d~~l~~~~~~~~~~~--~~~~~~L~~G~~lv~~~~~~~~~---~l~~~i~~~~-----vt~l~~~P~~l~~l~~~~~~~~ 467 (722)
.+++..+|++|-..+ +-+..+|.+|.++++-+....+. .+.+++.+.. ++++...+.....|+.+
T Consensus 128 GVv~~I~PwN~P~~~~~~~~~~ALaaGN~VvlKps~~tp~~~~~l~~~l~~aglP~gv~~vv~g~~~~~~~l~~~----- 202 (462)
T 3etf_A 128 GVILAIMPWNFPLWQVLRGAVPILLAGNSYLLKHAPNVTGCAQMIARILAEAGTPAGVYGWVNANNEGVSQMIND----- 202 (462)
T ss_dssp SEEEEECCSSSTTHHHHHHHHHHHHTTCEEEEECCTTCHHHHHHHHHHHHHTTCCBTTEEECCCCHHHHHHHHTS-----
T ss_pred cEEEEECCCchHHHHHHHHHHHHHhcCCEEEEECCCCCcHHHHHHHHHHHHhCCCcCeEEEEECCHHHHHHHhcC-----
Confidence 467778888876665 45778999999999976544432 4556666642 23333334455555543
Q ss_pred CCccceeEEEeecC
Q 004952 468 LDWTKIRSFASTGE 481 (722)
Q Consensus 468 ~~l~~Lr~i~~~Ge 481 (722)
+.++.|.+.|.
T Consensus 203 ---~~v~~v~fTGS 213 (462)
T 3etf_A 203 ---PRIAAVTVTGS 213 (462)
T ss_dssp ---TTEEEEEEESC
T ss_pred ---CCCCEEEEeCC
Confidence 34566666664
No 96
>2o2p_A Formyltetrahydrofolate dehydrogenase; aldehyde dehydrogenase, FDH, oxidoreductase; 1.70A {Rattus norvegicus} PDB: 2o2q_A* 2o2r_A* 3rho_A* 3rhm_A* 3rhj_A* 3rhq_A* 3rhp_A* 3rhr_A* 3rhl_A*
Probab=20.81 E-value=2.4e+02 Score=30.15 Aligned_cols=47 Identities=11% Similarity=0.048 Sum_probs=33.7
Q ss_pred CEEEEecCccccchh--HHHHHHhhcCCEEEEecCCCCh---hhHHHHHHHh
Q 004952 398 DVYCWPTNLGWVMGP--VILFSSFLNGATLALYQGSPLE---RSFGKFVQDA 444 (722)
Q Consensus 398 d~~l~~~~~~~~~~~--~~~~~~L~~G~~lv~~~~~~~~---~~l~~~i~~~ 444 (722)
.+++..+|++|-..+ +-+..+|++|.++|+-+....| ..+.+++.+.
T Consensus 180 GVV~~I~PwN~P~~~~~~~~a~ALaaGNtVVlKps~~tp~ta~~l~~l~~ea 231 (517)
T 2o2p_A 180 GVCGIVIPWNYPLMMLSWKTAACLAAGNTVVIKPAQVTPLTALKFAELTLKA 231 (517)
T ss_dssp CEEEEECCSSSHHHHHHHHHHHHHHTTCEEEEECCTTCCHHHHHHHHHHHHT
T ss_pred ccEEEECCCcchHHHHHHHHHHHHHcCCEEEEECCCccHHHHHHHHHHHHHh
Confidence 477888888876554 4577889999999997654443 3566777765
No 97
>1uxt_A Glyceraldehyde-3-phosphate dehydrogenase (NADP+); GAPN, ALDH, glucose 1-phosphate, glycolysis, regulation, catatysis, oxidoreductase; HET: G1P NAD; 2.2A {Thermoproteus tenax} SCOP: c.82.1.1 PDB: 1uxp_A* 1uxq_A* 1uxr_A* 1uxn_A* 1uxu_A* 1uxv_A* 1ky8_A*
Probab=20.69 E-value=2.6e+02 Score=29.72 Aligned_cols=49 Identities=16% Similarity=0.017 Sum_probs=34.7
Q ss_pred CCCEEEEecCccccchh--HHHHHHhhcCCEEEEecCCCCh---hhHHHHHHHh
Q 004952 396 VGDVYCWPTNLGWVMGP--VILFSSFLNGATLALYQGSPLE---RSFGKFVQDA 444 (722)
Q Consensus 396 ~~d~~l~~~~~~~~~~~--~~~~~~L~~G~~lv~~~~~~~~---~~l~~~i~~~ 444 (722)
|-.+++..+|++|-..+ +.+..+|++|.++|+-+....+ ..+.+++.+.
T Consensus 157 P~GVv~~I~PwN~P~~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~ea 210 (501)
T 1uxt_A 157 PLGVVAAITPFNYPLFDAVNKITYSFIYGNAVVVKPSISDPLPAAMAVKALLDA 210 (501)
T ss_dssp ECSEEEEECCTTSTTHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eccEEEEECCCccHHHHHHHHHHHHHHcCCEEEEeCCCCchHHHHHHHHHHHHh
Confidence 33578888888886655 5577899999999997654433 2456666664
No 98
>3ros_A NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Lactobacillus acidophilus}
Probab=20.40 E-value=3.6e+02 Score=28.55 Aligned_cols=78 Identities=15% Similarity=0.155 Sum_probs=48.7
Q ss_pred CCCEEEEecCccccchh--HHHHHHhhcCCEEEEecCCCCh---hhHHHHHHHhC-----CcEEechhHHHHHHHhcCCC
Q 004952 396 VGDVYCWPTNLGWVMGP--VILFSSFLNGATLALYQGSPLE---RSFGKFVQDAG-----VTVLGTVPSLVKAWRNTNCL 465 (722)
Q Consensus 396 ~~d~~l~~~~~~~~~~~--~~~~~~L~~G~~lv~~~~~~~~---~~l~~~i~~~~-----vt~l~~~P~~l~~l~~~~~~ 465 (722)
|-.+++..+|++|-..+ +-+..+|.+|.++|+-+....+ ..+.+++.+.+ ++++.........|+.+
T Consensus 123 P~GVV~~I~PwN~P~~~~~~~~a~ALaaGN~VVlKps~~tp~t~~~l~~l~~~aGlP~gvv~vv~g~~~~~~~L~~~--- 199 (484)
T 3ros_A 123 STGVIMACEPWNFPLYQVIRVFAPNFIVGNPILLKHAHNVPGSAALTAKIIKRAGAPEGSLINLYPSYDQLADIIAD--- 199 (484)
T ss_dssp CCCEEEEECCSSSTTHHHHHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHHHTCCTTSEEEECCCHHHHHHHHTS---
T ss_pred CCceEEEECCCchHHHHHHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHHhCcCcCeEEEEeCChHHHHHHHhC---
Confidence 33577788888876665 4577899999999997755444 34667777663 23444333333335443
Q ss_pred CCCCccceeEEEeecC
Q 004952 466 EGLDWTKIRSFASTGE 481 (722)
Q Consensus 466 ~~~~l~~Lr~i~~~Ge 481 (722)
+.++.|.+.|.
T Consensus 200 -----p~vd~I~fTGS 210 (484)
T 3ros_A 200 -----PRIQGVALTGS 210 (484)
T ss_dssp -----TTEEEEEEESC
T ss_pred -----CCcCEEEEECC
Confidence 34667776664
Done!