Query 004953
Match_columns 722
No_of_seqs 735 out of 4834
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 10:52:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004953.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004953hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 3.4E-43 1.2E-47 415.6 26.1 425 29-477 6-480 (768)
2 4ecn_A Leucine-rich repeat pro 100.0 1.3E-40 4.3E-45 392.1 29.0 337 28-385 262-741 (876)
3 4eco_A Uncharacterized protein 100.0 4.6E-41 1.6E-45 388.7 24.8 341 28-385 23-501 (636)
4 1ogq_A PGIP-2, polygalacturona 100.0 9.6E-41 3.3E-45 352.1 17.8 295 31-332 2-302 (313)
5 3rgz_A Protein brassinosteroid 100.0 1.1E-39 3.8E-44 385.6 22.8 279 80-364 267-552 (768)
6 3v47_A TOLL-like receptor 5B a 100.0 3.3E-37 1.1E-41 342.6 25.7 323 61-389 6-412 (455)
7 2id5_A Lingo-1, leucine rich r 100.0 2.3E-36 7.8E-41 338.1 25.6 323 61-390 5-338 (477)
8 4eco_A Uncharacterized protein 100.0 4.6E-35 1.6E-39 338.5 21.5 360 94-476 195-600 (636)
9 3t6q_A CD180 antigen; protein- 100.0 2.8E-34 9.7E-39 330.9 28.0 322 60-387 5-391 (606)
10 3vq2_A TLR4, TOLL-like recepto 100.0 1.8E-33 6E-38 324.3 29.9 133 82-214 32-165 (606)
11 2z81_A CD282 antigen, TOLL-lik 100.0 3.9E-34 1.3E-38 325.7 23.9 199 65-266 4-211 (549)
12 3o6n_A APL1; leucine-rich repe 100.0 6.2E-34 2.1E-38 309.8 21.4 323 54-388 3-355 (390)
13 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 7.1E-33 2.4E-37 316.2 29.3 296 82-389 52-514 (562)
14 2z7x_B TOLL-like receptor 1, v 100.0 2.6E-33 8.8E-38 316.8 25.0 158 223-389 321-485 (520)
15 3t6q_A CD180 antigen; protein- 100.0 3.2E-33 1.1E-37 322.1 26.1 300 83-389 255-564 (606)
16 1ziw_A TOLL-like receptor 3; i 100.0 9.6E-33 3.3E-37 322.5 30.3 319 62-386 1-367 (680)
17 4ecn_A Leucine-rich repeat pro 100.0 3.4E-33 1.2E-37 328.9 24.4 293 80-383 446-787 (876)
18 3oja_B Anopheles plasmodium-re 100.0 2.6E-33 8.8E-38 321.9 22.8 324 53-388 8-361 (597)
19 4g8a_A TOLL-like receptor 4; l 100.0 2.6E-32 9E-37 315.7 28.8 317 68-389 34-584 (635)
20 3j0a_A TOLL-like receptor 5; m 100.0 5.9E-32 2E-36 322.8 32.5 159 81-239 23-187 (844)
21 3j0a_A TOLL-like receptor 5; m 100.0 2.6E-32 8.7E-37 326.0 27.2 298 79-385 45-394 (844)
22 3v47_A TOLL-like receptor 5B a 100.0 1.8E-32 6.3E-37 304.4 23.9 349 84-460 12-417 (455)
23 2id5_A Lingo-1, leucine rich r 100.0 8.5E-32 2.9E-36 301.0 27.8 294 84-386 13-310 (477)
24 2z63_A TOLL-like receptor 4, v 100.0 6.8E-32 2.3E-36 308.6 25.8 135 248-387 344-485 (570)
25 2z63_A TOLL-like receptor 4, v 100.0 8.7E-32 3E-36 307.7 26.1 161 224-389 345-535 (570)
26 2z81_A CD282 antigen, TOLL-lik 100.0 1.5E-31 5.3E-36 304.3 25.8 295 80-389 48-514 (549)
27 1ogq_A PGIP-2, polygalacturona 100.0 7.1E-33 2.4E-37 291.9 12.4 248 106-361 50-302 (313)
28 2z7x_B TOLL-like receptor 1, v 100.0 1.7E-31 5.7E-36 302.0 23.5 291 82-387 21-414 (520)
29 1ziw_A TOLL-like receptor 3; i 100.0 5.2E-31 1.8E-35 307.9 28.4 301 84-389 250-626 (680)
30 1xku_A Decorin; proteoglycan, 100.0 3.6E-30 1.2E-34 273.4 28.9 291 61-382 27-329 (330)
31 2ft3_A Biglycan; proteoglycan, 100.0 3.8E-30 1.3E-34 273.5 27.2 269 106-383 54-331 (332)
32 4fcg_A Uncharacterized protein 100.0 1.9E-31 6.6E-36 282.7 15.9 286 31-365 23-316 (328)
33 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.9E-30 9.8E-35 294.6 26.8 289 84-388 33-444 (562)
34 3vq2_A TLR4, TOLL-like recepto 100.0 7E-30 2.4E-34 294.2 29.6 362 85-477 14-559 (606)
35 4fmz_A Internalin; leucine ric 100.0 6.7E-30 2.3E-34 273.3 26.4 282 81-385 65-346 (347)
36 1xku_A Decorin; proteoglycan, 100.0 2.4E-29 8.3E-34 267.0 26.1 265 83-386 32-307 (330)
37 2ft3_A Biglycan; proteoglycan, 100.0 1.7E-29 5.9E-34 268.5 24.0 288 60-361 28-331 (332)
38 1o6v_A Internalin A; bacterial 100.0 3E-29 1E-33 279.4 25.5 344 82-477 46-389 (466)
39 3bz5_A Internalin-J, INLJ; leu 100.0 1.6E-28 5.5E-33 271.9 30.7 211 82-316 42-252 (457)
40 1o6v_A Internalin A; bacterial 100.0 7.3E-29 2.5E-33 276.2 26.3 281 80-387 66-346 (466)
41 3o6n_A APL1; leucine-rich repe 100.0 3.9E-29 1.3E-33 271.9 22.6 267 103-386 42-309 (390)
42 3oja_B Anopheles plasmodium-re 100.0 1.3E-28 4.4E-33 282.8 27.3 266 104-386 49-315 (597)
43 4fmz_A Internalin; leucine ric 100.0 2.2E-28 7.6E-33 261.4 26.9 283 81-388 43-327 (347)
44 1jl5_A Outer protein YOPM; leu 100.0 1.1E-28 3.9E-33 272.9 24.8 268 82-386 11-291 (454)
45 2z66_A Variable lymphocyte rec 100.0 8.8E-30 3E-34 267.4 14.3 255 60-336 2-263 (306)
46 3zyi_A Leucine-rich repeat-con 100.0 2.1E-28 7.3E-33 271.4 25.7 230 106-389 75-307 (452)
47 2z80_A TOLL-like receptor 2, v 100.0 3.2E-29 1.1E-33 268.8 16.3 253 107-365 53-316 (353)
48 3zyj_A Leucine-rich repeat-con 100.0 4.8E-28 1.6E-32 267.6 24.7 226 106-335 64-293 (440)
49 3bz5_A Internalin-J, INLJ; leu 100.0 2.4E-27 8.3E-32 262.5 29.9 271 94-388 30-302 (457)
50 1jl5_A Outer protein YOPM; leu 100.0 8.8E-27 3E-31 257.8 32.1 261 81-385 90-350 (454)
51 4g8a_A TOLL-like receptor 4; l 100.0 3.7E-27 1.3E-31 272.5 30.4 153 85-240 34-187 (635)
52 2z80_A TOLL-like receptor 2, v 100.0 1.6E-28 5.6E-33 263.2 17.2 266 114-389 39-318 (353)
53 1ozn_A Reticulon 4 receptor; N 100.0 2.3E-28 8E-33 253.8 16.9 252 85-342 14-269 (285)
54 1wwl_A Monocyte differentiatio 100.0 9.7E-30 3.3E-34 267.9 6.2 245 82-335 43-310 (312)
55 3zyj_A Leucine-rich repeat-con 100.0 3.1E-27 1.1E-31 261.1 25.8 248 110-389 47-296 (440)
56 2z66_A Variable lymphocyte rec 99.9 3.6E-27 1.2E-31 247.5 18.5 248 109-365 10-263 (306)
57 4fcg_A Uncharacterized protein 99.9 4.5E-27 1.5E-31 249.1 19.3 234 104-385 79-314 (328)
58 1ozn_A Reticulon 4 receptor; N 99.9 1.1E-26 3.7E-31 241.3 17.0 238 81-319 31-270 (285)
59 3zyi_A Leucine-rich repeat-con 99.9 8.2E-26 2.8E-30 250.6 24.9 253 58-336 45-305 (452)
60 3o53_A Protein LRIM1, AGAP0063 99.9 8E-28 2.7E-32 253.8 6.6 264 83-365 11-278 (317)
61 3g06_A SSPH2 (leucine-rich rep 99.9 6E-25 2.1E-29 250.7 30.3 259 83-388 41-300 (622)
62 1wwl_A Monocyte differentiatio 99.9 5.3E-28 1.8E-32 254.6 2.7 249 102-386 39-310 (312)
63 2o6q_A Variable lymphocyte rec 99.9 5.5E-25 1.9E-29 226.5 23.1 215 61-287 3-218 (270)
64 2z62_A TOLL-like receptor 4, v 99.9 5.4E-25 1.8E-29 227.3 20.3 229 86-338 11-241 (276)
65 3oja_A Leucine-rich immune mol 99.9 2.8E-26 9.5E-31 256.2 9.6 226 104-342 32-259 (487)
66 2z62_A TOLL-like receptor 4, v 99.9 5.9E-25 2E-29 227.0 18.1 229 61-291 1-241 (276)
67 3o53_A Protein LRIM1, AGAP0063 99.9 7.8E-27 2.7E-31 246.2 3.8 245 81-339 33-281 (317)
68 3oja_A Leucine-rich immune mol 99.9 5E-26 1.7E-30 254.1 8.0 236 80-329 32-270 (487)
69 1z7x_W Ribonuclease inhibitor; 99.9 8.5E-28 2.9E-32 267.2 -7.1 305 82-386 56-412 (461)
70 3rfs_A Internalin B, repeat mo 99.9 4E-24 1.4E-28 220.3 14.8 198 83-287 20-218 (272)
71 4glp_A Monocyte differentiatio 99.9 1.1E-23 3.6E-28 221.5 18.2 224 106-335 64-308 (310)
72 3g06_A SSPH2 (leucine-rich rep 99.9 1.5E-22 5.1E-27 230.9 28.1 241 81-366 60-300 (622)
73 1z7x_W Ribonuclease inhibitor; 99.9 8.2E-27 2.8E-31 259.2 -7.8 303 82-385 3-354 (461)
74 3rfs_A Internalin B, repeat mo 99.9 5.5E-23 1.9E-27 211.7 18.5 202 81-293 40-241 (272)
75 2o6q_A Variable lymphocyte rec 99.9 3E-22 1E-26 206.0 23.3 210 56-267 6-221 (270)
76 3m19_A Variable lymphocyte rec 99.9 1.2E-22 4.3E-27 206.5 19.3 190 63-265 4-193 (251)
77 1p9a_G Platelet glycoprotein I 99.9 2.7E-22 9.1E-27 208.4 21.1 205 150-389 6-212 (290)
78 2xwt_C Thyrotropin receptor; s 99.9 6.3E-23 2.1E-27 207.0 15.4 195 107-307 32-236 (239)
79 1p9a_G Platelet glycoprotein I 99.9 4.3E-22 1.5E-26 206.9 21.5 196 82-284 10-205 (290)
80 4glp_A Monocyte differentiatio 99.9 1.5E-22 5.1E-27 212.7 11.6 224 83-311 65-308 (310)
81 2xwt_C Thyrotropin receptor; s 99.9 7.9E-22 2.7E-26 198.9 15.6 218 61-284 6-236 (239)
82 3goz_A Leucine-rich repeat-con 99.9 9.4E-24 3.2E-28 226.9 1.4 252 87-339 3-302 (362)
83 4ay9_X Follicle-stimulating ho 99.9 1.5E-21 5.1E-26 208.7 18.4 244 63-331 7-256 (350)
84 3m19_A Variable lymphocyte rec 99.9 2.4E-21 8.2E-26 196.9 18.4 180 106-289 14-194 (251)
85 2o6s_A Variable lymphocyte rec 99.9 1.2E-21 4.1E-26 193.1 15.1 181 60-268 2-182 (208)
86 3goz_A Leucine-rich repeat-con 99.9 2.3E-23 7.8E-28 223.9 1.1 225 110-334 2-266 (362)
87 1h6u_A Internalin H; cell adhe 99.9 2.7E-21 9.2E-26 202.8 16.6 193 103-334 38-230 (308)
88 1h6u_A Internalin H; cell adhe 99.9 6.4E-21 2.2E-25 199.9 17.5 191 81-287 40-230 (308)
89 2ast_B S-phase kinase-associat 99.9 9.8E-24 3.4E-28 224.2 -4.0 261 66-367 38-310 (336)
90 2ca6_A RAN GTPase-activating p 99.9 1.2E-23 4.2E-28 228.1 -3.5 143 97-239 23-200 (386)
91 2ca6_A RAN GTPase-activating p 99.9 2E-23 6.8E-28 226.5 -2.8 241 122-366 24-319 (386)
92 2ast_B S-phase kinase-associat 99.8 1.3E-22 4.4E-27 215.6 1.9 251 107-389 48-310 (336)
93 3cvr_A Invasion plasmid antige 99.8 2.4E-20 8.2E-25 210.2 15.0 213 55-319 34-252 (571)
94 4ay9_X Follicle-stimulating ho 99.8 4.9E-20 1.7E-24 196.9 16.3 241 109-385 12-259 (350)
95 3cvr_A Invasion plasmid antige 99.8 1.7E-19 5.9E-24 203.2 20.5 188 131-345 60-254 (571)
96 2o6s_A Variable lymphocyte rec 99.8 1.6E-19 5.5E-24 177.8 16.7 152 109-264 10-161 (208)
97 2v9t_B SLIT homolog 2 protein 99.8 2.7E-19 9.2E-24 177.8 16.7 161 60-240 6-166 (220)
98 3e6j_A Variable lymphocyte rec 99.8 8.3E-19 2.8E-23 175.5 17.4 156 64-240 18-173 (229)
99 2v70_A SLIT-2, SLIT homolog 2 99.8 6.4E-19 2.2E-23 175.1 16.3 152 86-240 15-167 (220)
100 3ogk_B Coronatine-insensitive 99.8 3E-21 1E-25 221.4 -2.9 298 81-385 163-501 (592)
101 3ogk_B Coronatine-insensitive 99.8 1.6E-21 5.5E-26 223.6 -5.7 296 83-386 139-477 (592)
102 1h6t_A Internalin B; cell adhe 99.8 2.4E-18 8.3E-23 178.7 16.2 169 105-287 45-213 (291)
103 1h6t_A Internalin B; cell adhe 99.8 1.9E-18 6.6E-23 179.4 15.2 171 127-310 43-213 (291)
104 2xot_A Amphoterin-induced prot 99.8 5.8E-19 2E-23 189.4 11.6 176 86-265 22-203 (361)
105 2v9t_B SLIT homolog 2 protein 99.8 5.8E-18 2E-22 168.2 16.8 153 109-265 14-166 (220)
106 2xot_A Amphoterin-induced prot 99.8 2.8E-18 9.6E-23 184.0 15.2 174 109-287 21-202 (361)
107 2v70_A SLIT-2, SLIT homolog 2 99.8 5.7E-18 1.9E-22 168.3 14.9 153 109-265 14-167 (220)
108 1m9s_A Internalin B; cell inva 99.8 3.2E-18 1.1E-22 194.9 15.0 189 83-287 22-210 (605)
109 1m9s_A Internalin B; cell inva 99.7 8.1E-18 2.8E-22 191.6 16.9 172 81-267 42-213 (605)
110 3e6j_A Variable lymphocyte rec 99.7 2.6E-17 8.9E-22 164.6 17.6 150 109-263 22-171 (229)
111 4b8c_D Glucose-repressible alc 99.7 4.5E-19 1.5E-23 206.9 3.9 215 34-267 131-357 (727)
112 1xeu_A Internalin C; cellular 99.7 2.3E-18 7.8E-23 176.1 7.1 165 108-287 21-185 (263)
113 4ezg_A Putative uncharacterize 99.7 1.7E-17 5.7E-22 161.9 11.3 131 103-239 41-172 (197)
114 2p1m_B Transport inhibitor res 99.7 8E-20 2.7E-24 209.5 -6.3 199 81-281 104-345 (594)
115 4ezg_A Putative uncharacterize 99.7 2E-17 6.9E-22 161.3 11.4 152 81-240 43-195 (197)
116 1xeu_A Internalin C; cellular 99.7 1.8E-17 6.3E-22 169.3 9.9 171 81-267 18-188 (263)
117 2p1m_B Transport inhibitor res 99.7 4E-19 1.4E-23 203.7 -5.7 298 81-384 129-493 (594)
118 1w8a_A SLIT protein; signaling 99.7 1.5E-16 5.1E-21 154.4 13.0 127 86-215 12-139 (192)
119 4asz_A BDNF/NT-3 growth factor 99.7 7.8E-17 2.7E-21 167.0 9.7 90 624-713 13-108 (299)
120 1dce_A Protein (RAB geranylger 99.7 2.4E-19 8.1E-24 203.0 -10.4 188 129-338 348-550 (567)
121 2o6r_A Variable lymphocyte rec 99.7 7.7E-16 2.6E-20 147.2 15.0 135 61-215 3-137 (177)
122 4aoj_A High affinity nerve gro 99.7 1E-16 3.4E-21 168.6 9.6 89 625-713 42-136 (329)
123 1dce_A Protein (RAB geranylger 99.7 9.8E-19 3.4E-23 198.0 -7.2 195 103-304 346-567 (567)
124 4gt4_A Tyrosine-protein kinase 99.7 1.8E-16 6.2E-21 165.0 10.1 87 626-712 28-121 (308)
125 1w8a_A SLIT protein; signaling 99.6 8.8E-16 3E-20 149.0 13.6 129 109-240 11-140 (192)
126 2ell_A Acidic leucine-rich nuc 99.6 5.1E-16 1.7E-20 147.1 11.3 133 105-239 23-160 (168)
127 4b8c_D Glucose-repressible alc 99.6 5.6E-17 1.9E-21 189.3 4.3 185 106-315 173-359 (727)
128 2wfh_A SLIT homolog 2 protein 99.6 1.9E-15 6.6E-20 146.6 14.3 126 86-215 14-139 (193)
129 2ell_A Acidic leucine-rich nuc 99.6 7.3E-16 2.5E-20 146.0 9.7 134 81-216 23-161 (168)
130 2je0_A Acidic leucine-rich nuc 99.6 8.9E-16 3E-20 142.3 7.7 109 106-216 17-127 (149)
131 2je0_A Acidic leucine-rich nuc 99.6 1E-15 3.4E-20 141.9 7.6 129 81-211 16-149 (149)
132 2wfh_A SLIT homolog 2 protein 99.6 8.1E-15 2.8E-19 142.2 14.2 128 109-240 13-140 (193)
133 2o6r_A Variable lymphocyte rec 99.6 2.2E-14 7.5E-19 137.0 15.9 130 108-240 9-138 (177)
134 3sb4_A Hypothetical leucine ri 99.6 3.2E-16 1.1E-20 165.7 2.9 277 82-378 25-327 (329)
135 3sb4_A Hypothetical leucine ri 99.6 1.5E-15 5.2E-20 160.5 6.3 260 81-356 48-327 (329)
136 4b9d_A Serine/threonine-protei 99.5 9.3E-15 3.2E-19 153.8 10.2 90 624-713 24-116 (350)
137 4fih_A Serine/threonine-protei 99.5 6.6E-15 2.3E-19 154.7 8.7 90 624-713 74-164 (346)
138 3omv_A RAF proto-oncogene seri 99.5 1.2E-14 4.3E-19 150.6 9.4 88 622-712 34-123 (307)
139 4ase_A Vascular endothelial gr 99.5 9.8E-15 3.4E-19 154.7 8.3 99 615-713 55-162 (353)
140 4fie_A Serine/threonine-protei 99.5 1.7E-14 5.7E-19 155.5 9.9 90 624-713 151-241 (423)
141 4aw0_A HPDK1, 3-phosphoinositi 99.5 1.8E-14 6.1E-19 149.1 8.0 90 624-713 32-125 (311)
142 3hmm_A TGF-beta receptor type- 99.5 2.4E-14 8.2E-19 149.1 8.5 84 626-713 5-94 (303)
143 4fdw_A Leucine rich hypothetic 99.5 8.2E-13 2.8E-17 142.9 20.4 264 82-364 113-384 (401)
144 3fpq_A Serine/threonine-protei 99.5 5.6E-14 1.9E-18 144.6 10.6 87 627-713 29-122 (290)
145 4fdw_A Leucine rich hypothetic 99.5 1.1E-12 3.8E-17 141.8 20.7 263 103-384 110-382 (401)
146 1a9n_A U2A', U2A'; complex (nu 99.5 4.4E-14 1.5E-18 134.8 8.1 132 101-238 14-152 (176)
147 3g39_A Variable lymphocyte rec 99.5 1.8E-13 6.1E-18 129.8 12.2 105 85-192 12-116 (170)
148 1a9n_A U2A', U2A'; complex (nu 99.4 8.6E-14 2.9E-18 132.8 7.4 109 126-239 15-126 (176)
149 1ds9_A Outer arm dynein; leuci 99.4 3.7E-16 1.3E-20 152.4 -9.5 130 105-239 17-153 (198)
150 1ds9_A Outer arm dynein; leuci 99.4 2.8E-16 9.6E-21 153.3 -10.3 150 83-239 19-185 (198)
151 3hyh_A Carbon catabolite-derep 99.4 1.8E-13 6.2E-18 139.5 9.9 89 624-713 13-105 (275)
152 4g31_A Eukaryotic translation 99.4 1.1E-13 3.7E-18 143.6 8.2 88 625-712 6-107 (299)
153 4g3f_A NF-kappa-beta-inducing 99.4 1E-13 3.6E-18 145.1 7.8 85 624-713 58-143 (336)
154 3g39_A Variable lymphocyte rec 99.4 1.1E-12 3.8E-17 124.3 12.7 105 108-215 11-115 (170)
155 3ubd_A Ribosomal protein S6 ki 99.4 5.6E-14 1.9E-18 145.3 3.3 90 624-713 24-119 (304)
156 2r9u_A Variable lymphocyte rec 99.4 2E-12 7E-17 122.9 12.7 104 85-191 15-118 (174)
157 2r9u_A Variable lymphocyte rec 99.4 2.5E-12 8.5E-17 122.3 12.4 105 109-216 15-119 (174)
158 3uto_A Twitchin; kinase, muscl 99.3 1.7E-12 5.9E-17 146.8 10.4 89 624-712 157-246 (573)
159 2c30_A Serine/threonine-protei 99.3 2.9E-12 9.9E-17 134.7 10.9 101 612-712 23-134 (321)
160 3uim_A Brassinosteroid insensi 99.3 1.7E-12 5.9E-17 136.6 8.0 105 609-713 15-120 (326)
161 4b99_A Mitogen-activated prote 99.3 2.8E-12 9.5E-17 138.2 9.2 87 624-711 54-149 (398)
162 2qkw_B Protein kinase; three-h 99.3 7.6E-13 2.6E-17 139.1 4.5 99 613-711 28-126 (321)
163 2nru_A Interleukin-1 receptor- 99.3 9.5E-12 3.2E-16 129.7 12.8 101 611-712 12-122 (307)
164 2ifg_A High affinity nerve gro 99.3 9.8E-12 3.4E-16 132.1 11.5 112 61-191 3-116 (347)
165 4f9c_A Cell division cycle 7-r 99.3 6.1E-12 2.1E-16 134.0 9.2 89 621-711 18-111 (361)
166 3s95_A LIMK-1, LIM domain kina 99.3 1.1E-11 3.8E-16 129.4 10.9 90 624-713 10-100 (310)
167 3fxz_A Serine/threonine-protei 99.2 1.8E-11 6.3E-16 127.0 11.2 90 624-713 20-110 (297)
168 4aw2_A Serine/threonine-protei 99.2 5.1E-12 1.7E-16 138.3 6.8 100 614-713 64-167 (437)
169 2qol_A Ephrin receptor; recept 99.2 9.1E-12 3.1E-16 133.8 8.3 90 624-713 45-139 (373)
170 3fe3_A MAP/microtubule affinit 99.2 3E-11 1E-15 127.3 11.1 91 623-713 14-107 (328)
171 3kul_A Ephrin type-A receptor 99.2 2E-11 6.8E-16 128.5 9.6 90 624-713 49-143 (325)
172 3v5w_A G-protein coupled recep 99.2 2.4E-11 8.2E-16 137.2 10.1 90 624-713 189-285 (689)
173 3cbl_A C-FES, proto-oncogene t 99.2 1.5E-11 5.2E-16 132.3 8.1 93 621-713 111-205 (377)
174 4hcu_A Tyrosine-protein kinase 99.2 2.8E-11 9.6E-16 123.5 9.5 89 624-713 10-98 (269)
175 3uqc_A Probable conserved tran 99.2 3.2E-11 1.1E-15 124.5 9.9 89 624-712 31-123 (286)
176 1qcf_A Haematopoetic cell kina 99.2 1.1E-11 3.8E-16 136.8 6.9 95 617-713 181-275 (454)
177 2x4f_A Myosin light chain kina 99.2 2.3E-11 7.8E-16 130.6 8.8 87 627-713 92-179 (373)
178 3p86_A Serine/threonine-protei 99.2 1.7E-11 5.8E-16 128.1 7.6 92 621-713 34-127 (309)
179 1k9a_A Carboxyl-terminal SRC k 99.2 2E-11 6.7E-16 134.6 8.4 90 622-714 191-281 (450)
180 1opk_A P150, C-ABL, proto-onco 99.2 9E-12 3.1E-16 139.0 5.8 93 620-713 216-309 (495)
181 4fs7_A Uncharacterized protein 99.2 8.6E-10 3E-14 119.2 21.2 283 80-381 69-375 (394)
182 2psq_A Fibroblast growth facto 99.2 2.8E-11 9.7E-16 129.8 9.3 90 624-713 81-180 (370)
183 3sxs_A Cytoplasmic tyrosine-pr 99.2 4.7E-11 1.6E-15 121.7 10.0 91 623-714 7-97 (268)
184 3ugc_A Tyrosine-protein kinase 99.2 2.7E-11 9.2E-16 125.5 8.3 90 624-713 10-106 (295)
185 3zgw_A Maternal embryonic leuc 99.2 4.4E-11 1.5E-15 126.9 9.9 91 623-713 9-101 (347)
186 1luf_A Muscle-specific tyrosin 99.2 3.1E-11 1E-15 127.9 8.5 93 621-713 44-143 (343)
187 1fmk_A C-SRC, P60-SRC, tyrosin 99.2 1.9E-11 6.5E-16 134.9 7.1 94 618-713 178-271 (452)
188 3v8s_A RHO-associated protein 99.2 1.7E-11 5.9E-16 133.0 6.7 98 616-713 61-162 (410)
189 3hko_A Calcium/calmodulin-depe 99.2 3.5E-11 1.2E-15 127.6 8.8 93 619-711 21-119 (345)
190 2vd5_A DMPK protein; serine/th 99.2 2.5E-11 8.5E-16 131.8 7.8 100 614-713 51-154 (412)
191 3qd2_B Eukaryotic translation 99.2 4.5E-11 1.5E-15 125.8 9.6 70 624-693 6-77 (332)
192 2ifg_A High affinity nerve gro 99.2 6.5E-11 2.2E-15 125.7 10.8 103 110-215 12-116 (347)
193 3vhe_A Vascular endothelial gr 99.2 2E-11 6.7E-16 130.3 6.7 101 614-714 12-121 (359)
194 2clq_A Mitogen-activated prote 99.2 1.1E-10 3.6E-15 120.8 11.8 89 625-713 23-112 (295)
195 3gen_A Tyrosine-protein kinase 99.2 4.6E-11 1.6E-15 122.9 8.8 91 622-713 22-112 (283)
196 2yab_A Death-associated protei 99.2 5.7E-11 1.9E-15 126.8 9.5 89 624-712 12-107 (361)
197 4fvq_A Tyrosine-protein kinase 99.2 4.3E-11 1.5E-15 123.4 8.3 90 624-713 8-105 (289)
198 2h8h_A Proto-oncogene tyrosine 99.2 2.2E-11 7.6E-16 137.2 6.6 94 618-713 261-354 (535)
199 3l9p_A Anaplastic lymphoma kin 99.2 4.5E-11 1.5E-15 128.1 8.7 91 624-714 71-168 (367)
200 3c0i_A Peripheral plasma membr 99.1 4.5E-11 1.5E-15 127.3 8.5 90 624-713 24-119 (351)
201 3tki_A Serine/threonine-protei 99.1 7.1E-11 2.4E-15 124.2 9.9 87 624-710 7-95 (323)
202 1kob_A Twitchin; kinase, intra 99.1 7.7E-11 2.6E-15 127.0 10.3 89 624-712 51-140 (387)
203 2i1m_A Macrophage colony-stimu 99.1 5.1E-11 1.7E-15 125.7 8.6 96 619-714 41-144 (333)
204 3a62_A Ribosomal protein S6 ki 99.1 6.5E-11 2.2E-15 124.7 9.3 90 624-713 17-114 (327)
205 3f3z_A Calcium/calmodulin-depe 99.1 7.4E-11 2.5E-15 120.9 9.5 90 624-713 9-99 (277)
206 1o6l_A RAC-beta serine/threoni 99.1 6E-11 2.1E-15 125.4 8.9 90 624-713 5-98 (337)
207 4eqm_A Protein kinase; transfe 99.1 1E-10 3.5E-15 121.1 10.4 90 624-713 11-104 (294)
208 2ac3_A MAP kinase-interacting 99.1 1.7E-10 5.7E-15 120.7 12.0 89 625-713 13-104 (316)
209 3t9t_A Tyrosine-protein kinase 99.1 8.1E-11 2.8E-15 119.7 9.3 89 624-713 8-96 (267)
210 3kmu_A ILK, integrin-linked ki 99.1 3.2E-11 1.1E-15 123.0 6.2 89 624-713 10-102 (271)
211 3un9_A NLR family member X1; l 99.1 7.3E-13 2.5E-17 141.9 -6.4 162 106-287 72-252 (372)
212 2ivs_A Proto-oncogene tyrosine 99.1 4.1E-11 1.4E-15 125.1 7.0 93 622-714 21-120 (314)
213 1p4o_A Insulin-like growth fac 99.1 3.9E-11 1.3E-15 125.9 6.8 101 614-714 15-122 (322)
214 1tki_A Titin; serine kinase, m 99.1 1.3E-10 4.6E-15 121.9 10.8 88 624-712 5-93 (321)
215 2y0a_A Death-associated protei 99.1 8.3E-11 2.8E-15 123.8 9.2 89 624-712 11-106 (326)
216 2bdw_A Hypothetical protein K1 99.1 9.7E-11 3.3E-15 125.2 9.3 88 624-711 29-119 (362)
217 1x8b_A WEE1HU, WEE1-like prote 99.1 2.2E-10 7.6E-15 117.7 11.7 91 624-714 11-105 (289)
218 2jam_A Calcium/calmodulin-depe 99.1 1.4E-10 4.8E-15 120.6 10.2 90 624-713 9-99 (304)
219 2j7t_A Serine/threonine-protei 99.1 1.6E-10 5.4E-15 120.0 10.5 91 623-713 18-109 (302)
220 3un9_A NLR family member X1; l 99.1 1.1E-12 3.7E-17 140.6 -6.1 134 82-215 72-224 (372)
221 3kfa_A Tyrosine-protein kinase 99.1 4.7E-11 1.6E-15 123.1 6.3 92 621-713 10-102 (288)
222 2w4o_A Calcium/calmodulin-depe 99.1 8.6E-11 3E-15 124.9 8.5 88 623-712 52-140 (349)
223 3uc3_A Serine/threonine-protei 99.1 1.7E-10 5.7E-15 123.3 10.7 90 623-713 19-109 (361)
224 3gni_B Strad alpha; kinase fol 99.1 1.5E-10 5E-15 125.1 10.4 90 624-713 25-119 (389)
225 1t46_A HOMO sapiens V-KIT hard 99.1 6.8E-11 2.3E-15 123.4 7.5 93 622-714 21-121 (313)
226 4euu_A Serine/threonine-protei 99.1 1.3E-10 4.4E-15 121.8 9.6 90 624-713 9-102 (319)
227 1fot_A TPK1 delta, CAMP-depend 99.1 9.7E-11 3.3E-15 122.8 8.5 90 624-713 6-99 (318)
228 3is5_A Calcium-dependent prote 99.1 1.9E-10 6.5E-15 118.5 10.6 90 625-714 23-114 (285)
229 3lxl_A Tyrosine-protein kinase 99.1 1.8E-10 6.1E-15 121.2 10.5 90 624-713 23-119 (327)
230 3soc_A Activin receptor type-2 99.1 9.1E-11 3.1E-15 123.2 8.2 89 623-713 23-115 (322)
231 3bhy_A Death-associated protei 99.1 2.1E-10 7.1E-15 117.9 10.6 90 624-713 5-101 (283)
232 3a8x_A Protein kinase C IOTA t 99.1 1.9E-10 6.5E-15 122.0 10.5 90 624-713 9-103 (345)
233 2zv2_A Calcium/calmodulin-depe 99.1 1.3E-10 4.3E-15 120.6 8.8 84 624-707 13-125 (298)
234 3eqc_A Dual specificity mitoge 99.1 1.8E-10 6.1E-15 123.0 10.0 90 624-713 33-124 (360)
235 3niz_A Rhodanese family protei 99.1 1.5E-10 5E-15 121.0 9.0 87 624-711 21-109 (311)
236 2wqm_A Serine/threonine-protei 99.1 3.4E-10 1.2E-14 118.0 11.7 90 624-713 32-125 (310)
237 2buj_A Serine/threonine-protei 99.1 1.3E-10 4.6E-15 121.5 8.6 92 623-714 28-124 (317)
238 2pvf_A Fibroblast growth facto 99.1 1.5E-10 5E-15 122.3 8.9 91 623-713 34-134 (334)
239 3tt0_A Basic fibroblast growth 99.1 1.6E-10 5.4E-15 124.5 9.2 91 623-713 68-168 (382)
240 3soa_A Calcium/calmodulin-depe 99.1 1.6E-10 5.3E-15 126.9 9.3 91 623-713 10-103 (444)
241 3txo_A PKC-L, NPKC-ETA, protei 99.1 1.8E-10 6E-15 122.6 9.4 91 623-713 22-117 (353)
242 1xjd_A Protein kinase C, theta 99.1 1.6E-10 5.5E-15 122.5 8.9 92 622-713 15-111 (345)
243 2w1i_A JAK2; chromosomal rearr 99.1 2.2E-10 7.5E-15 120.5 9.8 90 624-713 41-137 (326)
244 2pmi_A Negative RE, cyclin-dep 99.1 2.2E-10 7.4E-15 120.1 9.7 90 623-713 4-95 (317)
245 2a2a_A Death-associated protei 99.1 2E-10 7E-15 120.4 9.5 89 624-712 12-107 (321)
246 3qup_A Tyrosine-protein kinase 99.1 9.7E-11 3.3E-15 122.9 6.8 94 621-714 20-125 (323)
247 3kn6_A Ribosomal protein S6 ki 99.1 4.8E-10 1.6E-14 117.9 12.1 82 629-713 16-99 (325)
248 3kk8_A Calcium/calmodulin depe 99.1 4.2E-10 1.4E-14 115.6 11.4 91 623-713 5-98 (284)
249 3dtc_A Mitogen-activated prote 99.1 1.9E-10 6.5E-15 117.3 8.7 87 624-711 7-97 (271)
250 2yfx_A Tyrosine-protein kinase 99.1 1.9E-10 6.4E-15 121.1 8.8 92 623-714 29-127 (327)
251 1qpc_A LCK kinase; alpha beta 99.1 1.1E-10 3.8E-15 119.7 6.9 89 622-712 11-99 (279)
252 1rjb_A FL cytokine receptor; k 99.1 9.5E-11 3.2E-15 124.2 6.5 94 620-713 41-142 (344)
253 4fr4_A YANK1, serine/threonine 99.1 1.5E-10 5.3E-15 124.3 8.2 90 624-713 15-108 (384)
254 3o0g_A Cell division protein k 99.1 2.5E-10 8.5E-15 118.0 9.4 86 624-710 2-90 (292)
255 4e5w_A Tyrosine-protein kinase 99.1 3E-10 1E-14 117.8 10.1 89 625-713 22-118 (302)
256 1rdq_E PKA C-alpha, CAMP-depen 99.1 2.1E-10 7E-15 122.0 9.0 90 624-713 41-134 (350)
257 4dc2_A Protein kinase C IOTA t 99.1 2E-10 6.8E-15 123.9 8.7 90 624-713 52-146 (396)
258 3p1a_A MYT1 kinase, membrane-a 99.1 1.7E-10 5.8E-15 120.5 7.9 89 624-713 57-149 (311)
259 3gxj_A TGF-beta receptor type- 99.1 2.7E-10 9.1E-15 118.2 9.3 86 624-713 3-94 (303)
260 2h6d_A 5'-AMP-activated protei 99.1 3.2E-10 1.1E-14 116.0 9.7 90 624-713 11-104 (276)
261 1phk_A Phosphorylase kinase; g 99.1 4.5E-10 1.5E-14 116.2 10.9 91 623-713 16-117 (298)
262 2rku_A Serine/threonine-protei 99.1 3.7E-10 1.3E-14 116.8 10.2 90 624-713 15-108 (294)
263 3q5i_A Protein kinase; CDPK, m 99.1 3.5E-10 1.2E-14 126.5 10.7 91 623-713 35-139 (504)
264 1mqb_A Ephrin type-A receptor 99.1 3E-10 1E-14 119.9 9.5 89 625-713 45-139 (333)
265 1u5q_A Serine/threonine protei 99.1 2.6E-10 8.9E-15 121.1 9.1 87 625-712 55-145 (348)
266 3fdn_A Serine/threonine-protei 99.0 2.4E-10 8.3E-15 117.2 8.5 91 623-713 8-102 (279)
267 1ob3_A PFPK5, cell division co 99.0 2.9E-10 9.8E-15 117.3 9.1 88 624-712 2-91 (288)
268 2h34_A Serine/threonine-protei 99.0 4E-10 1.4E-14 117.5 10.3 90 624-713 34-127 (309)
269 2w5a_A Serine/threonine-protei 99.0 4.1E-10 1.4E-14 115.4 10.1 91 624-714 6-101 (279)
270 4agu_A Cyclin-dependent kinase 99.0 4.9E-10 1.7E-14 116.8 10.9 89 624-712 3-94 (311)
271 2eva_A TAK1 kinase - TAB1 chim 99.0 1.9E-10 6.4E-15 120.0 7.5 84 624-712 8-91 (307)
272 3cok_A Serine/threonine-protei 99.0 2.2E-10 7.4E-15 117.4 7.8 90 624-713 11-104 (278)
273 3ork_A Serine/threonine protei 99.0 1.2E-10 4.2E-15 121.5 6.0 90 624-713 12-109 (311)
274 2owb_A Serine/threonine-protei 99.0 4.4E-10 1.5E-14 118.7 10.2 90 624-713 41-134 (335)
275 4eut_A Serine/threonine-protei 99.0 2.2E-10 7.7E-15 124.0 8.2 90 624-713 9-102 (396)
276 2xir_A Vascular endothelial gr 99.0 2.3E-10 7.7E-15 119.6 7.9 99 615-713 18-125 (316)
277 2y7j_A Phosphorylase B kinase 99.0 6.3E-10 2.1E-14 119.0 11.3 93 621-713 91-193 (365)
278 3lij_A Calcium/calmodulin depe 99.0 2.8E-10 9.6E-15 127.0 8.9 90 624-713 37-129 (494)
279 3lxp_A Non-receptor tyrosine-p 99.0 5.4E-10 1.8E-14 117.1 10.2 87 626-712 33-127 (318)
280 3h4j_B AMPK kdaid, SNF1-like p 99.0 3E-10 1E-14 119.9 8.3 89 624-713 9-101 (336)
281 2acx_A G protein-coupled recep 99.0 3E-10 1E-14 127.6 8.6 91 623-713 183-277 (576)
282 3e7e_A HBUB1, BUB1A, mitotic c 99.0 4.6E-10 1.6E-14 120.0 9.6 89 622-713 63-160 (365)
283 1mp8_A Focal adhesion kinase 1 99.0 5.4E-10 1.8E-14 114.8 9.7 90 623-713 14-108 (281)
284 2yex_A Serine/threonine-protei 99.0 5.2E-10 1.8E-14 114.3 9.5 87 624-710 7-95 (276)
285 4fl3_A Tyrosine-protein kinase 99.0 4.9E-10 1.7E-14 128.6 10.1 83 630-713 375-462 (635)
286 3a7i_A MST3 kinase, serine/thr 99.0 7.3E-10 2.5E-14 115.1 10.6 89 624-712 22-112 (303)
287 4ejn_A RAC-alpha serine/threon 99.0 1.5E-10 5.2E-15 127.4 5.6 90 624-713 148-241 (446)
288 3i6u_A CDS1, serine/threonine- 99.0 3.1E-10 1E-14 123.8 7.9 88 622-710 133-229 (419)
289 2vgo_A Serine/threonine-protei 99.0 4.1E-10 1.4E-14 115.8 8.3 90 624-713 14-107 (284)
290 2ozo_A Tyrosine-protein kinase 99.0 4.5E-10 1.5E-14 128.5 9.5 81 631-712 343-427 (613)
291 2i0e_A Protein kinase C-beta I 99.0 3.8E-10 1.3E-14 120.0 8.3 91 623-713 19-114 (353)
292 1byg_A CSK, protein (C-termina 99.0 4.3E-10 1.5E-14 115.2 8.5 88 624-714 21-109 (278)
293 3brb_A Proto-oncogene tyrosine 99.0 2.2E-10 7.5E-15 119.6 6.3 92 621-712 31-133 (313)
294 3nyv_A Calmodulin-domain prote 99.0 4.7E-10 1.6E-14 124.8 9.4 89 624-712 26-118 (484)
295 3gbz_A Kinase, CMGC CDK; ssgci 99.0 4.1E-10 1.4E-14 118.6 8.5 91 622-713 32-125 (329)
296 2y94_A 5'-AMP-activated protei 99.0 3.1E-10 1.1E-14 125.4 7.8 89 624-712 16-108 (476)
297 2vwi_A Serine/threonine-protei 99.0 2E-10 6.8E-15 119.2 5.8 92 622-713 13-106 (303)
298 2x7f_A TRAF2 and NCK-interacti 99.0 2.9E-10 9.9E-15 119.4 7.1 99 614-713 14-120 (326)
299 1u59_A Tyrosine-protein kinase 99.0 8.3E-10 2.8E-14 113.7 10.4 82 630-712 16-101 (287)
300 2eue_A Carbon catabolite derep 99.0 8.4E-10 2.9E-14 112.9 10.3 87 624-711 13-103 (275)
301 1xbb_A Tyrosine-protein kinase 99.0 3.9E-10 1.3E-14 116.4 7.8 89 624-713 16-110 (291)
302 3mwu_A Calmodulin-domain prote 99.0 4.7E-10 1.6E-14 124.9 9.0 90 624-713 22-114 (486)
303 1zy4_A Serine/threonine-protei 99.0 4.9E-10 1.7E-14 116.0 8.4 89 624-713 6-108 (303)
304 4f0f_A Serine/threonine-protei 99.0 4.1E-10 1.4E-14 115.9 7.8 87 624-712 19-113 (287)
305 4aaa_A Cyclin-dependent kinase 99.0 6.8E-10 2.3E-14 117.0 9.6 87 624-710 25-114 (331)
306 3q4u_A Activin receptor type-1 99.0 6.6E-10 2.3E-14 115.1 9.4 85 624-712 8-98 (301)
307 3pg1_A Mitogen-activated prote 99.0 5.1E-10 1.7E-14 119.5 8.6 97 615-712 13-125 (362)
308 3c4z_A Rhodopsin kinase; Ser/T 99.0 4.9E-10 1.7E-14 125.5 8.8 90 624-713 185-278 (543)
309 1t4h_A Serine/threonine-protei 99.0 1.1E-09 3.8E-14 112.9 10.8 88 626-713 28-122 (290)
310 2wei_A Calmodulin-domain prote 99.0 8.9E-10 3E-14 113.5 10.0 90 624-713 22-114 (287)
311 4fs7_A Uncharacterized protein 99.0 8.6E-09 2.9E-13 111.4 18.2 262 79-360 91-376 (394)
312 2pml_X PFPK7, Ser/Thr protein 99.0 1.7E-10 5.7E-15 122.5 4.5 86 624-710 31-133 (348)
313 3com_A Serine/threonine-protei 99.0 9.3E-10 3.2E-14 114.8 10.0 89 622-712 27-116 (314)
314 2a19_B Interferon-induced, dou 99.0 5.7E-10 1.9E-14 114.5 8.1 86 624-713 11-113 (284)
315 3llt_A Serine/threonine kinase 99.0 6.5E-10 2.2E-14 118.5 8.7 100 612-713 23-128 (360)
316 2r5t_A Serine/threonine-protei 99.0 3.5E-10 1.2E-14 121.2 6.6 90 624-713 38-132 (373)
317 3cc6_A Protein tyrosine kinase 99.0 9.1E-10 3.1E-14 113.0 9.5 90 623-713 11-105 (281)
318 3poz_A Epidermal growth factor 99.0 6.9E-10 2.4E-14 116.7 8.7 89 624-713 15-109 (327)
319 1fvr_A Tyrosine-protein kinase 99.0 6.5E-10 2.2E-14 116.9 8.4 90 624-713 25-119 (327)
320 2qr7_A Ribosomal protein S6 ki 99.0 6.3E-10 2.2E-14 117.8 8.2 87 623-713 21-109 (342)
321 1vzo_A Ribosomal protein S6 ki 99.0 3.8E-10 1.3E-14 120.2 6.5 90 624-713 54-152 (355)
322 2i6l_A Mitogen-activated prote 99.0 7.2E-10 2.5E-14 115.8 8.3 87 624-711 11-112 (320)
323 2r3i_A Cell division protein k 99.0 1.4E-09 4.7E-14 112.6 10.3 89 624-713 3-94 (299)
324 3c1x_A Hepatocyte growth facto 99.0 4.2E-10 1.4E-14 120.7 6.5 87 626-712 91-183 (373)
325 1b6c_B TGF-B superfamily recep 99.0 1.6E-09 5.4E-14 114.5 10.6 87 623-713 41-133 (342)
326 3nsz_A CK II alpha, casein kin 98.9 1.5E-09 5.1E-14 114.1 9.7 85 624-711 36-124 (330)
327 2vuw_A Serine/threonine-protei 98.9 8.7E-10 3E-14 116.4 7.8 84 624-708 20-150 (336)
328 2ycf_A Serine/threonine-protei 98.9 9.4E-10 3.2E-14 115.4 7.8 87 624-711 10-105 (322)
329 3mtl_A Cell division protein k 98.9 4.6E-10 1.6E-14 117.9 5.3 89 624-713 2-92 (324)
330 3mdy_A Bone morphogenetic prot 98.9 1.8E-09 6.1E-14 113.8 9.9 87 623-713 36-128 (337)
331 3pls_A Macrophage-stimulating 98.9 1.5E-09 5.2E-14 112.2 9.1 88 626-713 23-116 (298)
332 3dbq_A Dual specificity protei 98.9 1.7E-09 5.8E-14 114.5 9.7 89 624-713 9-101 (343)
333 3f66_A Hepatocyte growth facto 98.9 1.2E-09 4.2E-14 113.0 8.2 89 625-713 26-120 (298)
334 2izr_A Casein kinase I isoform 98.9 1.3E-09 4.4E-14 114.8 8.4 87 624-713 9-97 (330)
335 3ttj_A Mitogen-activated prote 98.9 8.4E-10 2.9E-14 121.9 7.2 84 623-706 61-153 (464)
336 3rp9_A Mitogen-activated prote 98.9 1.3E-09 4.4E-14 120.4 8.6 87 624-711 53-147 (458)
337 4gt6_A Cell surface protein; l 98.9 5.7E-08 2E-12 104.9 21.4 281 84-383 66-368 (394)
338 3an0_A Dual specificity mitoge 98.9 2.9E-09 9.8E-14 112.5 10.8 90 623-713 50-142 (340)
339 3dls_A PAS domain-containing s 98.9 4.7E-10 1.6E-14 118.5 4.4 90 623-712 23-122 (335)
340 2pzi_A Probable serine/threoni 98.9 1.2E-09 4E-14 126.9 8.0 88 624-711 80-175 (681)
341 3eb0_A Putative uncharacterize 98.9 2.3E-09 7.7E-14 115.5 9.7 89 620-713 3-130 (383)
342 2zmd_A Dual specificity protei 98.9 2.7E-09 9.3E-14 115.1 10.1 88 625-713 57-148 (390)
343 2wtk_C Serine/threonine-protei 98.9 2.2E-09 7.5E-14 111.5 9.1 87 624-711 5-98 (305)
344 3ll6_A Cyclin G-associated kin 98.9 1.8E-09 6.1E-14 113.7 8.3 90 623-713 27-126 (337)
345 3lm5_A Serine/threonine-protei 98.9 1.9E-09 6.4E-14 113.4 8.1 89 623-711 27-120 (327)
346 3n9x_A Phosphotransferase; mal 98.9 1.9E-09 6.4E-14 118.1 8.3 89 623-712 25-121 (432)
347 1u46_A ACK-1, activated CDC42 98.9 1.6E-09 5.3E-14 111.7 7.2 90 624-714 18-114 (291)
348 1ua2_A CAK, cell division prot 98.9 1.5E-09 5.2E-14 115.1 7.3 88 623-711 9-102 (346)
349 3og7_A AKAP9-BRAF fusion prote 98.9 1.9E-09 6.6E-14 111.1 7.8 86 623-711 23-110 (289)
350 2j0j_A Focal adhesion kinase 1 98.9 3E-09 1E-13 122.5 10.1 91 622-713 388-483 (656)
351 3byv_A Rhoptry kinase; malaria 98.9 7.6E-10 2.6E-14 118.9 4.6 90 623-713 72-192 (377)
352 3fme_A Dual specificity mitoge 98.9 4.3E-09 1.5E-13 108.3 10.2 90 623-713 6-98 (290)
353 3kex_A Receptor tyrosine-prote 98.9 1E-09 3.6E-14 115.3 5.3 89 624-713 13-107 (325)
354 3rgf_A Cyclin-dependent kinase 98.9 4.1E-09 1.4E-13 114.4 10.0 81 629-712 26-111 (405)
355 3mi9_A Cell division protein k 98.9 3.1E-09 1.1E-13 112.8 8.9 86 624-710 17-113 (351)
356 3cek_A Dual specificity protei 98.9 1.7E-09 5.9E-14 112.8 6.6 99 614-713 18-120 (313)
357 2xrw_A Mitogen-activated prote 98.9 4E-09 1.4E-13 113.0 9.4 87 624-711 25-120 (371)
358 1cm8_A Phosphorylated MAP kina 98.9 2.1E-09 7.3E-14 114.9 7.1 90 623-713 24-122 (367)
359 3lb7_A RAF proto-oncogene seri 98.9 3.2E-09 1.1E-13 110.6 8.2 87 623-712 35-123 (307)
360 3oz6_A Mitogen-activated prote 98.9 4.7E-09 1.6E-13 113.2 9.7 90 623-713 8-103 (388)
361 3m2w_A MAP kinase-activated pr 98.8 4.7E-09 1.6E-13 108.8 9.1 84 625-713 18-108 (299)
362 2b9h_A MAP kinase FUS3, mitoge 98.8 5.4E-09 1.8E-13 111.0 9.7 89 623-712 10-105 (353)
363 3aln_A Dual specificity mitoge 98.8 1E-08 3.5E-13 107.6 11.7 89 623-712 21-112 (327)
364 3lzb_A Epidermal growth factor 98.8 3.8E-09 1.3E-13 111.1 8.3 89 624-713 15-109 (327)
365 2iwi_A Serine/threonine-protei 98.8 1.6E-09 5.4E-14 113.0 5.2 93 621-713 28-132 (312)
366 1nxk_A MAP kinase-activated pr 98.8 4.1E-09 1.4E-13 114.1 8.5 84 625-713 62-152 (400)
367 4exu_A Mitogen-activated prote 98.8 4.2E-09 1.4E-13 112.8 8.1 87 623-710 41-136 (371)
368 3g2f_A Bone morphogenetic prot 98.8 9.6E-09 3.3E-13 108.2 10.5 86 624-713 13-105 (336)
369 3qyz_A Mitogen-activated prote 98.8 6.2E-09 2.1E-13 111.2 9.1 89 623-712 26-121 (364)
370 3e3p_A Protein kinase, putativ 98.8 5.4E-09 1.9E-13 111.3 8.4 88 617-705 16-111 (360)
371 2fst_X Mitogen-activated prote 98.8 3.5E-09 1.2E-13 113.2 6.9 87 623-710 28-123 (367)
372 3g33_A Cell division protein k 98.8 6.5E-09 2.2E-13 108.1 8.7 90 623-713 8-111 (308)
373 2rio_A Serine/threonine-protei 98.8 7.3E-09 2.5E-13 113.4 9.5 84 626-713 17-101 (434)
374 3pfq_A PKC-B, PKC-beta, protei 98.8 3.7E-09 1.3E-13 122.1 7.4 91 623-713 340-435 (674)
375 3coi_A Mitogen-activated prote 98.8 5.3E-09 1.8E-13 111.1 7.9 85 624-709 24-117 (353)
376 3qa8_A MGC80376 protein; kinas 98.8 1.1E-09 3.6E-14 124.6 2.5 90 624-713 14-111 (676)
377 2y4i_B KSR2, HKSR2, kinase sup 98.8 7E-10 2.4E-14 116.0 0.9 94 617-712 26-121 (319)
378 1blx_A Cyclin-dependent kinase 98.8 5.8E-09 2E-13 109.4 8.0 91 622-713 9-111 (326)
379 1csn_A Casein kinase-1; phosph 98.8 1E-08 3.5E-13 105.9 9.7 87 624-713 10-98 (298)
380 2jii_A Serine/threonine-protei 98.8 2.7E-09 9.1E-14 113.5 5.3 84 624-713 42-150 (352)
381 4gt6_A Cell surface protein; l 98.8 1.2E-07 4.2E-12 102.3 18.1 286 80-383 85-389 (394)
382 4e7w_A Glycogen synthase kinas 98.8 6.4E-09 2.2E-13 112.4 7.8 80 624-707 40-125 (394)
383 2v62_A Serine/threonine-protei 98.8 5.3E-09 1.8E-13 110.8 6.9 88 624-712 37-143 (345)
384 3op5_A Serine/threonine-protei 98.8 6.1E-09 2.1E-13 111.2 7.4 91 622-713 33-144 (364)
385 1j1b_A Glycogen synthase kinas 98.8 8.9E-09 3E-13 112.2 8.1 80 625-709 55-141 (420)
386 3p23_A Serine/threonine-protei 98.8 7.6E-09 2.6E-13 113.1 7.6 86 623-712 23-109 (432)
387 3kvw_A DYRK2, dual specificity 98.7 3.1E-08 1E-12 108.3 10.7 88 624-713 97-191 (429)
388 2ra8_A Uncharacterized protein 98.7 3.8E-09 1.3E-13 112.1 3.1 203 82-308 107-341 (362)
389 3en9_A Glycoprotease, O-sialog 98.7 1.6E-08 5.6E-13 113.5 8.5 84 628-712 340-431 (540)
390 3fhr_A MAP kinase-activated pr 98.7 2.3E-08 7.7E-13 105.5 9.1 86 623-713 27-119 (336)
391 1z57_A Dual specificity protei 98.7 2.1E-08 7.2E-13 105.4 8.7 88 624-713 14-109 (339)
392 1wak_A Serine/threonine-protei 98.7 1.6E-08 5.5E-13 109.0 8.0 87 624-712 37-136 (397)
393 2ra8_A Uncharacterized protein 98.7 5.4E-09 1.9E-13 110.9 3.2 70 272-341 250-327 (362)
394 3q60_A ROP5B; pseudokinase, tr 98.7 3.3E-08 1.1E-12 105.8 9.2 90 624-714 62-181 (371)
395 2dyl_A Dual specificity mitoge 98.7 4.4E-08 1.5E-12 102.1 9.8 79 624-702 25-106 (318)
396 3uzp_A CKI-delta, CKID, casein 98.7 5.9E-08 2E-12 100.0 10.1 87 623-712 8-96 (296)
397 3a99_A Proto-oncogene serine/t 98.7 9.8E-09 3.4E-13 107.5 4.2 92 622-713 41-142 (320)
398 1zar_A RIO2 kinase; serine kin 98.6 3.4E-08 1.2E-12 101.3 7.7 98 618-719 84-207 (282)
399 1q8y_A SR protein kinase; tran 98.6 3.6E-08 1.2E-12 105.4 7.1 88 624-713 19-122 (373)
400 4hgt_A Casein kinase I isoform 98.6 8.3E-08 2.8E-12 98.8 9.3 88 623-713 8-97 (296)
401 2vx3_A Dual specificity tyrosi 98.6 7.9E-08 2.7E-12 103.3 8.9 90 622-713 52-148 (382)
402 3sv0_A Casein kinase I-like; t 98.6 1.6E-07 5.3E-12 103.9 10.9 87 624-713 7-95 (483)
403 2eu9_A Dual specificity protei 98.5 1.2E-07 4.2E-12 100.3 8.3 88 624-713 19-114 (355)
404 4h09_A Hypothetical leucine ri 98.5 9.2E-06 3.1E-10 86.9 22.6 264 83-365 47-324 (379)
405 4h09_A Hypothetical leucine ri 98.4 2E-05 6.9E-10 84.2 22.7 267 79-365 66-347 (379)
406 4azs_A Methyltransferase WBDD; 98.3 4.4E-07 1.5E-11 102.5 6.2 82 632-713 242-335 (569)
407 1io0_A Tropomodulin; LRR prote 98.2 8.4E-08 2.9E-12 91.7 -1.6 18 102-119 32-50 (185)
408 1io0_A Tropomodulin; LRR prote 98.2 1.9E-07 6.6E-12 89.2 0.9 110 82-191 36-164 (185)
409 3rw6_A Nuclear RNA export fact 98.2 3.9E-07 1.3E-11 91.7 2.5 80 127-208 167-257 (267)
410 3rw6_A Nuclear RNA export fact 98.2 1.1E-07 3.6E-12 95.9 -2.6 105 126-232 137-257 (267)
411 1zth_A RIO1 serine protein kin 98.0 3.4E-06 1.1E-10 85.2 5.6 74 626-703 49-151 (258)
412 3dzo_A Rhoptry kinase domain; 97.8 1.3E-05 4.5E-10 86.8 5.4 57 623-679 77-137 (413)
413 4gyi_A RIO2 kinase; protein ki 97.8 7.1E-06 2.4E-10 86.9 2.4 80 626-707 97-198 (397)
414 3e4g_A ATP synthase subunit S, 97.6 7.6E-06 2.6E-10 76.5 0.1 82 83-164 62-149 (176)
415 3e4g_A ATP synthase subunit S, 97.6 1.3E-05 4.4E-10 74.9 0.5 34 107-140 62-95 (176)
416 3tm0_A Aminoglycoside 3'-phosp 97.2 0.00074 2.5E-08 67.8 8.9 87 623-710 13-100 (263)
417 3rfe_A Platelet glycoprotein I 97.2 0.00037 1.3E-08 61.9 5.8 58 325-389 12-72 (130)
418 3d1u_A Putative fructosamine-3 97.2 0.0006 2.1E-08 69.6 8.2 76 628-707 19-97 (288)
419 1nd4_A Aminoglycoside 3'-phosp 96.9 0.00069 2.4E-08 67.6 5.3 73 633-708 29-103 (264)
420 3rfe_A Platelet glycoprotein I 96.9 0.0015 5.2E-08 57.9 6.5 58 277-335 11-69 (130)
421 1pgv_A TMD-1, tropomodulin TMD 96.8 0.00033 1.1E-08 66.6 1.3 34 298-331 99-136 (197)
422 1pgv_A TMD-1, tropomodulin TMD 96.6 0.00068 2.3E-08 64.4 2.5 82 83-164 42-136 (197)
423 3dxp_A Putative acyl-COA dehyd 94.4 0.041 1.4E-06 57.7 5.9 78 629-707 43-128 (359)
424 3f7w_A Putative fructosamine-3 93.8 0.083 2.8E-06 53.4 6.6 78 626-707 17-97 (288)
425 2k1k_A Ephrin type-A receptor 92.8 0.06 2E-06 35.7 2.3 27 555-581 6-32 (38)
426 3jr1_A Putative fructosamine-3 91.8 0.34 1.2E-05 49.6 7.8 75 629-707 41-118 (312)
427 2olc_A MTR kinase, methylthior 91.3 0.27 9.2E-06 52.2 6.8 76 630-707 36-122 (397)
428 2jwa_A Receptor tyrosine-prote 90.4 0.2 6.8E-06 34.2 2.9 9 560-568 12-20 (44)
429 4gkh_A Aminoglycoside 3'-phosp 90.0 1.4 4.9E-05 43.4 10.5 77 631-710 31-110 (272)
430 3r70_A Aminoglycoside phosphot 88.0 0.86 2.9E-05 46.6 7.3 74 625-708 38-115 (320)
431 3cxl_A N-chimerin; SH2, RHO-GA 87.3 0.071 2.4E-06 58.0 -1.6 59 630-691 148-215 (463)
432 3ovc_A Hygromycin-B 4-O-kinase 86.0 2 6.8E-05 44.8 8.8 73 629-707 46-121 (362)
433 3tdw_A Gentamicin resistance p 85.3 2.4 8.1E-05 43.0 8.8 74 630-709 25-102 (306)
434 3ats_A Putative uncharacterize 79.1 0.79 2.7E-05 47.6 2.4 78 630-707 26-120 (357)
435 2ks1_B Epidermal growth factor 77.9 2.2 7.4E-05 29.2 3.4 18 561-578 9-26 (44)
436 3sg8_A APH(2'')-ID; antibiotic 75.9 2.5 8.5E-05 42.6 5.0 75 629-709 25-105 (304)
437 2l2t_A Receptor tyrosine-prote 74.4 2.5 8.4E-05 28.9 2.9 14 562-575 9-22 (44)
438 2k9y_A Ephrin type-A receptor 72.4 1.6 5.6E-05 29.3 1.7 14 564-577 14-27 (41)
439 2q83_A YTAA protein; 2635576, 71.7 6.1 0.00021 40.2 6.8 72 631-707 39-118 (346)
440 1zyl_A Hypothetical protein YI 68.8 14 0.0005 37.1 8.9 75 631-707 33-114 (328)
441 2ppq_A HSK, HK, homoserine kin 51.8 23 0.0008 35.4 6.8 91 614-707 7-110 (322)
442 1nw1_A Choline kinase (49.2 KD 51.7 22 0.00074 37.7 6.7 72 630-707 79-159 (429)
443 2jwa_A Receptor tyrosine-prote 51.2 13 0.00043 25.4 2.9 9 566-574 14-22 (44)
444 2klu_A T-cell surface glycopro 51.0 10 0.00036 27.9 2.7 20 565-584 12-31 (70)
445 2pyw_A Uncharacterized protein 47.9 23 0.00078 37.3 6.2 72 630-704 40-122 (420)
446 2lz0_A Uncharacterized protein 45.1 49 0.0017 26.9 6.4 36 149-185 15-50 (100)
447 3feg_A Choline/ethanolamine ki 43.8 30 0.001 35.9 6.2 72 631-707 57-137 (379)
448 2k1k_A Ephrin type-A receptor 43.1 27 0.00091 23.0 3.5 29 558-586 5-34 (38)
449 2l34_A TYRO protein tyrosine k 37.1 20 0.0007 22.7 2.1 19 559-577 6-24 (33)
450 2lz0_A Uncharacterized protein 36.9 59 0.002 26.4 5.7 45 118-163 8-52 (100)
451 3csv_A Aminoglycoside phosphot 35.4 1.1E+02 0.0037 30.6 8.8 76 631-711 25-103 (333)
452 3i1a_A Spectinomycin phosphotr 33.7 76 0.0026 32.1 7.2 67 634-707 33-108 (339)
453 2knc_B Integrin beta-3; transm 33.5 27 0.00093 27.2 2.8 13 563-575 11-23 (79)
454 1afo_A Glycophorin A; integral 31.7 40 0.0014 22.0 2.8 20 561-580 11-30 (40)
455 3c5i_A Choline kinase; choline 31.1 38 0.0013 34.8 4.4 73 630-707 39-121 (369)
456 2qg7_A Ethanolamine kinase PV0 25.2 1.1E+02 0.0039 32.4 7.0 73 630-707 114-188 (458)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.4e-43 Score=415.64 Aligned_cols=425 Identities=24% Similarity=0.345 Sum_probs=332.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCCCCCCCCC-CCCCCCCceeecCCCCCCCCccceeEEEcCCCCCccc---cC-----
Q 004953 29 DSITDPIEVSALRSIKKSLVDDYSKLSNWNRG-DPCTSNWTGVLCFNTTMDDGYLHLRELQLLNLNLSGN---LS----- 99 (722)
Q Consensus 29 ~~~~~~~~~~~l~~~k~~l~~~~~~l~~w~~~-~~C~~~w~gv~C~~~~~~~~~~~l~~L~L~~~~l~~~---~~----- 99 (722)
+....++|++||++||+.+.||. .+++|... ++| .|+||+|+ . .+|+.|+|+++.+.|. ++
T Consensus 6 ~~~~~~~~~~all~~k~~~~~~~-~l~~W~~~~~~C--~w~gv~C~-~------~~v~~L~L~~~~l~g~~~~l~~~l~~ 75 (768)
T 3rgz_A 6 PSQSLYREIHQLISFKDVLPDKN-LLPDWSSNKNPC--TFDGVTCR-D------DKVTSIDLSSKPLNVGFSAVSSSLLS 75 (768)
T ss_dssp --CCHHHHHHHHHHHHTTCSCTT-SSTTCCTTSCGG--GSTTEEEE-T------TEEEEEECTTSCCCEEHHHHHHHTTT
T ss_pred cccCCHHHHHHHHHHHhhCCCcc-cccCCCCCCCCc--CCcceEEC-C------CcEEEEECCCCCcCCccCccChhHhc
Confidence 33446789999999999999887 89999754 445 89999996 2 4899999999888876 33
Q ss_pred ------------------ccccCCCCCCEEECCCCCCccCCCc--cccCCCCCCEEeccCCcCCCCCCccC-CCCCCCcE
Q 004953 100 ------------------PEIGRLSYLTILDFMWNKISGSIPK--EIGNIKSLELLLLNGNELTGSLPEEL-GYLPKLDR 158 (722)
Q Consensus 100 ------------------~~~~~l~~L~~L~Ls~n~l~~~~p~--~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~ 158 (722)
+.|+++++|++|||++|.+++.+|. .++++++|++|+|++|.+.+.+|..+ .++++|++
T Consensus 76 L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 155 (768)
T 3rgz_A 76 LTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEV 155 (768)
T ss_dssp CTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSE
T ss_pred cCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCE
Confidence 5788889999999999999998888 89999999999999999998888776 88999999
Q ss_pred EEcccCCCCCCCchh---hcCcCCCCEEECCCccccCCCCcCCCCCCccceeecccCCCCCCCCccCCCCCCCcEEECcC
Q 004953 159 IQIDQNYISGSLPKS---FANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDN 235 (722)
Q Consensus 159 L~L~~N~l~~~~p~~---~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~ 235 (722)
|+|++|++++..|.. +.++++|++|++++|.+++..+. ..+++|++|++++|++++.+|. ++.+++|++|++++
T Consensus 156 L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~ 232 (768)
T 3rgz_A 156 LDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISG 232 (768)
T ss_dssp EECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCS
T ss_pred EECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcC
Confidence 999999999888877 78999999999999999977654 7899999999999999988887 99999999999999
Q ss_pred CCCCCCCcchhccCCCCCcEEEccCCCCccCCCCCCCCCCccEEEccCCCCCccCCCcccc--CCcCEEEccCCcCcccC
Q 004953 236 NNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLDLSSNQLNGSIPPGRLS--LNITTIKLSNNKLTGTI 313 (722)
Q Consensus 236 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~--~~L~~L~L~~N~l~~~~ 313 (722)
|.+++ .+|..+..+++|++|++++|++++..|.. .+++|++|++++|++++.+|..... ++|++|++++|++++.+
T Consensus 233 n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~ 310 (768)
T 3rgz_A 233 NKLSG-DFSRAISTCTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV 310 (768)
T ss_dssp SCCCS-CHHHHTTTCSSCCEEECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECC
T ss_pred CcCCC-cccHHHhcCCCCCEEECCCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCcc
Confidence 99998 58999999999999999999999888776 8899999999999999999987543 79999999999999999
Q ss_pred CccCCCCCCCCEEeCCCCcCcccCChh-hhhhccCCCCcccEEEccCCcCCC-CCCCC-CCC-CceEEEccCCcCcCCCC
Q 004953 314 PSNFSGLPRLQRLFIANNSLSGSIPSS-IWQSRTLNATETFILDFQNNNLTN-ISGSF-NIP-PNVTVRLRGNPFCLNTN 389 (722)
Q Consensus 314 ~~~~~~l~~L~~L~L~~N~l~~~ip~~-~~~~~~l~~~~L~~L~ls~N~l~~-~~~~~-~~~-~l~~l~l~~N~l~~~~~ 389 (722)
|..|..+++|++|++++|+++|.+|.. +.. +++|++|++++|++++ ++..+ .++ ++++|++++|++++..+
T Consensus 311 p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~-----l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~ 385 (768)
T 3rgz_A 311 PPFFGSCSLLESLALSSNNFSGELPMDTLLK-----MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL 385 (768)
T ss_dssp CGGGGGCTTCCEEECCSSEEEEECCHHHHTT-----CTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECC
T ss_pred chHHhcCCCccEEECCCCcccCcCCHHHHhc-----CCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcC
Confidence 999999999999999999999999987 543 4788999999999986 45555 454 88999999999887653
Q ss_pred cccccCCCCCCCCcccCCCCC--------CCCCCCCC-CCCCCccCCCCCCcccccccceEEEEeeCCCCcCCCchhHHH
Q 004953 390 AEQFCGSHSDDDNEIDRSTNS--------TLDCRAQS-CPTDYEYSPTSPIRCFCAAPLLVGYRLKSPGLSYFPAYKNLF 460 (722)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~~~~~~p~~~~~ 460 (722)
...+......+....+..+. ...|.... ..............+....+.+..++++.|.++|.+|..-
T Consensus 386 -~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~-- 462 (768)
T 3rgz_A 386 -PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL-- 462 (768)
T ss_dssp -TTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGG--
T ss_pred -hhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHH--
Confidence 22222111112222222221 11111100 0000000000111223345567888888888888887541
Q ss_pred HHHHh--hhcccccceeee
Q 004953 461 EEYMT--SGLKLNLYQLDI 477 (722)
Q Consensus 461 ~~~~~--~~l~ls~n~l~~ 477 (722)
. ..+ +.|+++.|++++
T Consensus 463 ~-~l~~L~~L~L~~N~l~~ 480 (768)
T 3rgz_A 463 M-YVKTLETLILDFNDLTG 480 (768)
T ss_dssp G-GCTTCCEEECCSSCCCS
T ss_pred c-CCCCceEEEecCCcccC
Confidence 0 011 467888888875
No 2
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.3e-40 Score=392.12 Aligned_cols=337 Identities=22% Similarity=0.304 Sum_probs=286.8
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCCCCCCCC------CCCCCCCC------------ceeecCCCCCCCCccceeEEEc
Q 004953 28 DDSITDPIEVSALRSIKKSLVDDYSKLSNWNR------GDPCTSNW------------TGVLCFNTTMDDGYLHLRELQL 89 (722)
Q Consensus 28 ~~~~~~~~~~~~l~~~k~~l~~~~~~l~~w~~------~~~C~~~w------------~gv~C~~~~~~~~~~~l~~L~L 89 (722)
.++.+..+|++||++||+++.++ +|+. .+||.|.| .||.|+.. .+|+.|+|
T Consensus 262 ~~~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~------~~V~~L~L 330 (876)
T 4ecn_A 262 KETAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNN------GRVTGLSL 330 (876)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTT------SCEEEEEC
T ss_pred cccccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecCC------CCEEEEEC
Confidence 44555668999999999999766 6753 35755799 99999752 48999999
Q ss_pred CCCCCccccCccccCCCCCCEEEC-CCCCCccC-----------------------------------------------
Q 004953 90 LNLNLSGNLSPEIGRLSYLTILDF-MWNKISGS----------------------------------------------- 121 (722)
Q Consensus 90 ~~~~l~~~~~~~~~~l~~L~~L~L-s~n~l~~~----------------------------------------------- 121 (722)
+++++.|.+|+.|++|++|++|+| ++|.++|.
T Consensus 331 s~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~ 410 (876)
T 4ecn_A 331 AGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINR 410 (876)
T ss_dssp TTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHT
T ss_pred ccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhh
Confidence 999999999999999999999999 77755443
Q ss_pred -----------------------------CCccccCCCCCCEEeccCCcCCC-----------------CCCccCC--CC
Q 004953 122 -----------------------------IPKEIGNIKSLELLLLNGNELTG-----------------SLPEELG--YL 153 (722)
Q Consensus 122 -----------------------------~p~~~~~l~~L~~L~L~~n~l~~-----------------~~p~~~~--~l 153 (722)
+|..|+++++|++|+|++|.+++ .+|+.++ ++
T Consensus 411 ~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L 490 (876)
T 4ecn_A 411 NPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNL 490 (876)
T ss_dssp CTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGC
T ss_pred CccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccC
Confidence 78889999999999999999998 3899988 99
Q ss_pred CCCcEEEcccCCCCCCCchhhcCcCCCCEEECCCcc-ccC-CCCcCCCCC-------CccceeecccCCCCCCCCc--cC
Q 004953 154 PKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNS-ISG-QIPPELSRL-------PSLVHMLLDNNNLTGYLPP--EL 222 (722)
Q Consensus 154 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~-~~~~~l~~l-------~~L~~L~L~~N~l~~~~~~--~l 222 (722)
++|++|+|++|.+.+.+|..|.++++|++|+|++|+ +++ .+|..+..+ ++|++|++++|+++ .+|. .+
T Consensus 491 ~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l 569 (876)
T 4ecn_A 491 KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASL 569 (876)
T ss_dssp TTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHH
T ss_pred CCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhh
Confidence 999999999999999999999999999999999998 887 777655554 49999999999999 7888 89
Q ss_pred CCCCCCcEEECcCCCCCCCCcchhccCCCCCcEEEccCCCCccCCCCCCCCCC-ccEEEccCCCCCccCCCcccc---CC
Q 004953 223 SELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPN-LGYLDLSSNQLNGSIPPGRLS---LN 298 (722)
Q Consensus 223 ~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~l~~l~~-L~~L~Ls~N~l~~~ip~~~~~---~~ 298 (722)
+.+++|+.|++++|.++ .+| .+..+++|+.|+|++|+++..+..+..+++ |+.|+|++|.++ .+|..... ++
T Consensus 570 ~~L~~L~~L~Ls~N~l~--~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~ 645 (876)
T 4ecn_A 570 QKMVKLGLLDCVHNKVR--HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYV 645 (876)
T ss_dssp TTCTTCCEEECTTSCCC--BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSC
T ss_pred hcCCCCCEEECCCCCcc--cch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhccccCC
Confidence 99999999999999998 577 899999999999999999954446888998 999999999999 78865333 24
Q ss_pred cCEEEccCCcCcccCCccC---C--CCCCCCEEeCCCCcCcccCChhhhhhccCCCCcccEEEccCCcCCCCCCCC-CCC
Q 004953 299 ITTIKLSNNKLTGTIPSNF---S--GLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGSF-NIP 372 (722)
Q Consensus 299 L~~L~L~~N~l~~~~~~~~---~--~l~~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~ls~N~l~~~~~~~-~~~ 372 (722)
|+.|+|++|++++.+|... . .+++|+.|+|++|+++ .+|..++. .+++|+.|+|++|+|+.++... ...
T Consensus 646 L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~----~l~~L~~L~Ls~N~L~~ip~~~~~~~ 720 (876)
T 4ecn_A 646 MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFA----TGSPISTIILSNNLMTSIPENSLKPK 720 (876)
T ss_dssp EEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHH----TTCCCSEEECCSCCCSCCCTTSSSCT
T ss_pred CCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHc----cCCCCCEEECCCCcCCccChHHhccc
Confidence 9999999999998776432 2 3458999999999999 78887764 2478899999999999887654 222
Q ss_pred --------CceEEEccCCcCc
Q 004953 373 --------PNVTVRLRGNPFC 385 (722)
Q Consensus 373 --------~l~~l~l~~N~l~ 385 (722)
+|+.|+|++|+++
T Consensus 721 ~~~l~nl~~L~~L~Ls~N~L~ 741 (876)
T 4ecn_A 721 DGNYKNTYLLTTIDLRFNKLT 741 (876)
T ss_dssp TSCCTTGGGCCEEECCSSCCC
T ss_pred cccccccCCccEEECCCCCCc
Confidence 8999999999987
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.6e-41 Score=388.73 Aligned_cols=341 Identities=21% Similarity=0.294 Sum_probs=295.3
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCC--------CCCCCCCCCCCCCCCC---ceeecCCCCCCCCccceeEEEcCCCCCcc
Q 004953 28 DDSITDPIEVSALRSIKKSLVDDY--------SKLSNWNRGDPCTSNW---TGVLCFNTTMDDGYLHLRELQLLNLNLSG 96 (722)
Q Consensus 28 ~~~~~~~~~~~~l~~~k~~l~~~~--------~~l~~w~~~~~C~~~w---~gv~C~~~~~~~~~~~l~~L~L~~~~l~~ 96 (722)
.+......|++||.++++++..+. +...+|....+| |.| .||+|+.. .+|+.|+|++++++|
T Consensus 23 ~~~~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~-c~w~~~~GV~C~~~------~~V~~L~L~~~~l~g 95 (636)
T 4eco_A 23 SRTAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKEL-DMWGAQPGVSLNSN------GRVTGLSLEGFGASG 95 (636)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCG-GGTTCCTTEEECTT------CCEEEEECTTSCCEE
T ss_pred hhhhhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCc-ccccCCCCeEEcCC------CCEEEEEecCcccCC
Confidence 344455679999999999986542 233479754333 379 99999653 489999999999999
Q ss_pred ccCccccCCCCCCEEECCCCC-----------------------------------------------------------
Q 004953 97 NLSPEIGRLSYLTILDFMWNK----------------------------------------------------------- 117 (722)
Q Consensus 97 ~~~~~~~~l~~L~~L~Ls~n~----------------------------------------------------------- 117 (722)
.+|+.|+++++|++|+|++|.
T Consensus 96 ~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~ 175 (636)
T 4eco_A 96 RVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSI 175 (636)
T ss_dssp EECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCC
T ss_pred cCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccccc
Confidence 999999999999999999884
Q ss_pred -------------------CccCCCccccCCCCCCEEeccCCcCCCC-----------------CCccCC--CCCCCcEE
Q 004953 118 -------------------ISGSIPKEIGNIKSLELLLLNGNELTGS-----------------LPEELG--YLPKLDRI 159 (722)
Q Consensus 118 -------------------l~~~~p~~~~~l~~L~~L~L~~n~l~~~-----------------~p~~~~--~l~~L~~L 159 (722)
+++ +|..|+++++|++|+|++|.+++. +|+.++ ++++|++|
T Consensus 176 ~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L 254 (636)
T 4eco_A 176 KKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDV 254 (636)
T ss_dssp CCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEE
T ss_pred ccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEE
Confidence 345 788999999999999999999985 999999 99999999
Q ss_pred EcccCCCCCCCchhhcCcCCCCEEECCCcc-ccC-CCCcCCCCC------CccceeecccCCCCCCCCc--cCCCCCCCc
Q 004953 160 QIDQNYISGSLPKSFANLNKTRHFHMNNNS-ISG-QIPPELSRL------PSLVHMLLDNNNLTGYLPP--ELSELPKLL 229 (722)
Q Consensus 160 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~-~~~~~l~~l------~~L~~L~L~~N~l~~~~~~--~l~~l~~L~ 229 (722)
+|++|.+.+.+|..|.++++|++|++++|+ +++ .+|..++.+ ++|++|++++|+++ .+|. .++.+++|+
T Consensus 255 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~ 333 (636)
T 4eco_A 255 EVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLG 333 (636)
T ss_dssp EEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCC
T ss_pred EecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCC
Confidence 999999999999999999999999999998 988 788888776 99999999999999 7888 899999999
Q ss_pred EEECcCCCCCCCCcchhccCCCCCcEEEccCCCCccCCCCCCCCCC-ccEEEccCCCCCccCCCcccc---CCcCEEEcc
Q 004953 230 ILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPN-LGYLDLSSNQLNGSIPPGRLS---LNITTIKLS 305 (722)
Q Consensus 230 ~L~l~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~l~~l~~-L~~L~Ls~N~l~~~ip~~~~~---~~L~~L~L~ 305 (722)
.|++++|.++| .+| .+..+++|+.|++++|+++..+..+..+++ |++|++++|.++ .+|..... ++|++|+++
T Consensus 334 ~L~L~~N~l~g-~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls 410 (636)
T 4eco_A 334 MLECLYNQLEG-KLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFS 410 (636)
T ss_dssp EEECCSCCCEE-ECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECC
T ss_pred EEeCcCCcCcc-chh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECc
Confidence 99999999997 588 899999999999999999955556888999 999999999999 88876433 279999999
Q ss_pred CCcCcccCCccCC-------CCCCCCEEeCCCCcCcccCChhhhhhccCCCCcccEEEccCCcCCCCCCCC-C-CC----
Q 004953 306 NNKLTGTIPSNFS-------GLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGSF-N-IP---- 372 (722)
Q Consensus 306 ~N~l~~~~~~~~~-------~l~~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~ls~N~l~~~~~~~-~-~~---- 372 (722)
+|++++.+|..|. .+++|++|++++|+++ .+|..++. .+++|+.|++++|+++.++... . ..
T Consensus 411 ~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~----~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~ 485 (636)
T 4eco_A 411 YNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFS----TGSPLSSINLMGNMLTEIPKNSLKDENENFK 485 (636)
T ss_dssp SSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHH----TTCCCSEEECCSSCCSBCCSSSSEETTEECT
T ss_pred CCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHc----cCCCCCEEECCCCCCCCcCHHHhcccccccc
Confidence 9999999999888 8889999999999999 78877664 2478999999999999877654 2 22
Q ss_pred ---CceEEEccCCcCc
Q 004953 373 ---PNVTVRLRGNPFC 385 (722)
Q Consensus 373 ---~l~~l~l~~N~l~ 385 (722)
+++.|++++|.++
T Consensus 486 ~l~~L~~L~Ls~N~l~ 501 (636)
T 4eco_A 486 NTYLLTSIDLRFNKLT 501 (636)
T ss_dssp TGGGCCEEECCSSCCC
T ss_pred ccCCccEEECcCCcCC
Confidence 8999999999988
No 4
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=9.6e-41 Score=352.12 Aligned_cols=295 Identities=30% Similarity=0.498 Sum_probs=226.2
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCCCCCCC-CCCCCCCCceeecCCCCCCCCccceeEEEcCCCCCcc--ccCccccCCCC
Q 004953 31 ITDPIEVSALRSIKKSLVDDYSKLSNWNR-GDPCTSNWTGVLCFNTTMDDGYLHLRELQLLNLNLSG--NLSPEIGRLSY 107 (722)
Q Consensus 31 ~~~~~~~~~l~~~k~~l~~~~~~l~~w~~-~~~C~~~w~gv~C~~~~~~~~~~~l~~L~L~~~~l~~--~~~~~~~~l~~ 107 (722)
.|.++|++||++||+.+.++. .+.+|.. .++|.|.|.||.|+... ...+|+.|+++++++++ .+|+.|.++++
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~---~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~ 77 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDT---QTYRVNNLDLSGLNLPKPYPIPSSLANLPY 77 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSS---SCCCEEEEEEECCCCSSCEECCGGGGGCTT
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCCCCCCCCcCCCcceEeCCCC---CCceEEEEECCCCCccCCcccChhHhCCCC
Confidence 477899999999999998775 7889975 46775569999996432 12479999999999998 88999999999
Q ss_pred CCEEECCC-CCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEEcccCCCCCCCchhhcCcCCCCEEECC
Q 004953 108 LTILDFMW-NKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMN 186 (722)
Q Consensus 108 L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 186 (722)
|++|++++ |.+.+.+|..|.++++|++|+|++|.+++.+|..|.++++|++|++++|.+++.+|..|.++++|++|+++
T Consensus 78 L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 157 (313)
T 1ogq_A 78 LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD 157 (313)
T ss_dssp CSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECC
T ss_pred CCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECc
Confidence 99999995 89998999999999999999999999988888889999999999999999988888889889999999999
Q ss_pred CccccCCCCcCCCCCC-ccceeecccCCCCCCCCccCCCCCCCcEEECcCCCCCCCCcchhccCCCCCcEEEccCCCCcc
Q 004953 187 NNSISGQIPPELSRLP-SLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQG 265 (722)
Q Consensus 187 ~N~l~~~~~~~l~~l~-~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 265 (722)
+|.+++.+|..+..++ +|++|++++|++++..|..+..++ |+.|++++|.+++ ..|..+..+++|+.|+|++|++++
T Consensus 158 ~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~ 235 (313)
T 1ogq_A 158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG-DASVLFGSDKNTQKIHLAKNSLAF 235 (313)
T ss_dssp SSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEE-CCGGGCCTTSCCSEEECCSSEECC
T ss_pred CCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccC-cCCHHHhcCCCCCEEECCCCceee
Confidence 9998888888888887 888888888888888888887776 8888888888876 467777777777777777777766
Q ss_pred CCCCCCCCCCccEEEccCCCCCccCCCcccc-CCcCEEEccCCcCcccCCccCCCCCCCCEEeCCCCc
Q 004953 266 PMPDLSRIPNLGYLDLSSNQLNGSIPPGRLS-LNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNS 332 (722)
Q Consensus 266 ~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 332 (722)
..+.+..+++|++|++++|++++.+|..... ++|++|+|++|++++.+|.. ..+++|+.+++++|+
T Consensus 236 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 236 DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp BGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred ecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 5555555556666666655555544443211 34444444444444444433 444444444444443
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.1e-39 Score=385.65 Aligned_cols=279 Identities=35% Similarity=0.510 Sum_probs=220.7
Q ss_pred CccceeEEEcCCCCCccccCccccCC-CCCCEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCcc-CCCCCCCc
Q 004953 80 GYLHLRELQLLNLNLSGNLSPEIGRL-SYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEE-LGYLPKLD 157 (722)
Q Consensus 80 ~~~~l~~L~L~~~~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~ 157 (722)
.+++++.|++++|.+++.+|..+..+ ++|++|+|++|.+++.+|..|+++++|++|++++|.+++.+|.. +.++++|+
T Consensus 267 ~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~ 346 (768)
T 3rgz_A 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK 346 (768)
T ss_dssp CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCC
T ss_pred ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCC
Confidence 45688899999999888888888765 88999999999988888888888999999999999888777765 88888899
Q ss_pred EEEcccCCCCCCCchhhcCcC-CCCEEECCCccccCCCCcCCCC--CCccceeecccCCCCCCCCccCCCCCCCcEEECc
Q 004953 158 RIQIDQNYISGSLPKSFANLN-KTRHFHMNNNSISGQIPPELSR--LPSLVHMLLDNNNLTGYLPPELSELPKLLILQLD 234 (722)
Q Consensus 158 ~L~L~~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~~~~l~~--l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~ 234 (722)
+|++++|++++.+|..+.+++ +|++|++++|.+++.+|..+.. +++|++|++++|++++.+|..+..+++|+.|+++
T Consensus 347 ~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 426 (768)
T 3rgz_A 347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS 426 (768)
T ss_dssp EEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECC
T ss_pred EEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECc
Confidence 999998888888888888877 8888888888887777777665 6778888888888877777777777888888888
Q ss_pred CCCCCCCCcchhccCCCCCcEEEccCCCCccCCCC-CCCCCCccEEEccCCCCCccCCCcccc-CCcCEEEccCCcCccc
Q 004953 235 NNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMPD-LSRIPNLGYLDLSSNQLNGSIPPGRLS-LNITTIKLSNNKLTGT 312 (722)
Q Consensus 235 ~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-l~~l~~L~~L~Ls~N~l~~~ip~~~~~-~~L~~L~L~~N~l~~~ 312 (722)
+|.+++ .+|..+..+++|+.|++++|++++..|. +..+++|++|++++|++++.+|..... ++|++|+|++|++++.
T Consensus 427 ~N~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 505 (768)
T 3rgz_A 427 FNYLSG-TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 505 (768)
T ss_dssp SSEEES-CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSC
T ss_pred CCcccC-cccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCc
Confidence 887776 4777777777888888888877776654 667777778888887777777765322 5777777777777777
Q ss_pred CCccCCCCCCCCEEeCCCCcCcccCChhhhhhccCCCCcccEEEccCCcCCC
Q 004953 313 IPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTN 364 (722)
Q Consensus 313 ~~~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~ls~N~l~~ 364 (722)
+|.+|+.+++|++|+|++|+++|.+|..+..+ ++|+.|++++|++++
T Consensus 506 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l-----~~L~~L~Ls~N~l~g 552 (768)
T 3rgz_A 506 IPKWIGRLENLAILKLSNNSFSGNIPAELGDC-----RSLIWLDLNTNLFNG 552 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCEEECCGGGGGC-----TTCCEEECCSSEEES
T ss_pred CChHHhcCCCCCEEECCCCcccCcCCHHHcCC-----CCCCEEECCCCccCC
Confidence 77777777777777777777777777777653 567777777777764
No 6
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.3e-37 Score=342.62 Aligned_cols=323 Identities=17% Similarity=0.220 Sum_probs=269.1
Q ss_pred CCCCCCCceeecCCCC---CCCCccceeEEEcCCCCCccccCccccCCCCCCEEECCCCCCccCC-CccccCCCCCCEEe
Q 004953 61 DPCTSNWTGVLCFNTT---MDDGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSI-PKEIGNIKSLELLL 136 (722)
Q Consensus 61 ~~C~~~w~gv~C~~~~---~~~~~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~ 136 (722)
..|.|.+..+.|.+.. .+...++++.|++++|.+++..|..|.++++|++|+|++|.+.+.+ +..|.++++|++|+
T Consensus 6 ~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~ 85 (455)
T 3v47_A 6 SECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILK 85 (455)
T ss_dssp -CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEE
T ss_pred ceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEe
Confidence 4565555568997554 2334468999999999999988999999999999999999997555 66799999999999
Q ss_pred ccCCcCCCCCCccCCCCCCCcEEEcccCCCCCCCchh--hcCcCCCCEEECCCccccCCCCcC-CCCCCccceeecccCC
Q 004953 137 LNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKS--FANLNKTRHFHMNNNSISGQIPPE-LSRLPSLVHMLLDNNN 213 (722)
Q Consensus 137 L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~--~~~l~~L~~L~L~~N~l~~~~~~~-l~~l~~L~~L~L~~N~ 213 (722)
|++|.+++..|..|.++++|++|++++|++++..+.. |.++++|++|++++|.+++..|.. +.++++|++|++++|+
T Consensus 86 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 165 (455)
T 3v47_A 86 LDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK 165 (455)
T ss_dssp CTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC
T ss_pred CCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc
Confidence 9999999888999999999999999999998755554 999999999999999999887876 8899999999999999
Q ss_pred CCCCCCccCCCC----------------------------------CCCcEEECcCCCCCCCCcchhcc-----------
Q 004953 214 LTGYLPPELSEL----------------------------------PKLLILQLDNNNFEGTTIPASYS----------- 248 (722)
Q Consensus 214 l~~~~~~~l~~l----------------------------------~~L~~L~l~~N~l~~~~~~~~~~----------- 248 (722)
+++..+..+..+ ++|+.|++++|.+++ ..|..+.
T Consensus 166 l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~~~~~~~~~~L~~L 244 (455)
T 3v47_A 166 VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKE-SMAKRFFDAIAGTKIQSL 244 (455)
T ss_dssp BSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCH-HHHHHHHHHTTTCCEEEE
T ss_pred ccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccc-cchhhhhccccccceeeE
Confidence 998877766543 578888888887764 2333221
Q ss_pred ----------------------------CCCCCcEEEccCCCCccCCCC-CCCCCCccEEEccCCCCCccCCCccc-cCC
Q 004953 249 ----------------------------NMSKLLKLSLRNCSLQGPMPD-LSRIPNLGYLDLSSNQLNGSIPPGRL-SLN 298 (722)
Q Consensus 249 ----------------------------~l~~L~~L~L~~N~l~~~~~~-l~~l~~L~~L~Ls~N~l~~~ip~~~~-~~~ 298 (722)
..++|+.|++++|++++..+. +..+++|++|++++|++++..|.... .++
T Consensus 245 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 324 (455)
T 3v47_A 245 ILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTH 324 (455)
T ss_dssp ECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred eeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCccc
Confidence 125788888888888876664 78899999999999999965554422 268
Q ss_pred cCEEEccCCcCcccCCccCCCCCCCCEEeCCCCcCcccCChhhhhhccCCCCcccEEEccCCcCCCCCCCC--CCCCceE
Q 004953 299 ITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGSF--NIPPNVT 376 (722)
Q Consensus 299 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~ls~N~l~~~~~~~--~~~~l~~ 376 (722)
|++|+|++|++++..|..|..+++|++|+|++|++++..|..+.. +++|+.|++++|+|+++++.. .+++|++
T Consensus 325 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 399 (455)
T 3v47_A 325 LLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLG-----LPNLKELALDTNQLKSVPDGIFDRLTSLQK 399 (455)
T ss_dssp CCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTT-----CTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred CCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccc-----cccccEEECCCCccccCCHhHhccCCcccE
Confidence 999999999999888899999999999999999999888887765 478999999999999987654 7889999
Q ss_pred EEccCCcCcCCCC
Q 004953 377 VRLRGNPFCLNTN 389 (722)
Q Consensus 377 l~l~~N~l~~~~~ 389 (722)
|++++|+|+|+|+
T Consensus 400 L~l~~N~l~~~~~ 412 (455)
T 3v47_A 400 IWLHTNPWDCSCP 412 (455)
T ss_dssp EECCSSCBCCCTT
T ss_pred EEccCCCcccCCC
Confidence 9999999999986
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.3e-36 Score=338.07 Aligned_cols=323 Identities=22% Similarity=0.233 Sum_probs=287.0
Q ss_pred CCCCC--CCceeecCCCCCC----CCccceeEEEcCCCCCccccCccccCCCCCCEEECCCCCCccCCCccccCCCCCCE
Q 004953 61 DPCTS--NWTGVLCFNTTMD----DGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLEL 134 (722)
Q Consensus 61 ~~C~~--~w~gv~C~~~~~~----~~~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 134 (722)
..|.| .|..|.|.+.... ....+++.|++++|.+++..+..|.++++|++|+|++|.+++..|..|.++++|++
T Consensus 5 ~~C~C~~~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 84 (477)
T 2id5_A 5 PRCECSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRT 84 (477)
T ss_dssp TTCEEETTTTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCeECCCCCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCE
Confidence 34555 5789999765432 23458999999999999998999999999999999999999999999999999999
Q ss_pred EeccCCcCCCCCCccCCCCCCCcEEEcccCCCCCCCchhhcCcCCCCEEECCCccccCCCCcCCCCCCccceeecccCCC
Q 004953 135 LLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNL 214 (722)
Q Consensus 135 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l 214 (722)
|+|++|.++...+..|.++++|++|+|++|++++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|++
T Consensus 85 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 164 (477)
T 2id5_A 85 LGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL 164 (477)
T ss_dssp EECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCC
T ss_pred EECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcC
Confidence 99999999977777889999999999999999999999999999999999999999998899999999999999999999
Q ss_pred CCCCCccCCCCCCCcEEECcCCCCCCCCcchhccCCCCCcEEEccCCCCccCCC-CCCCCCCccEEEccCCCCCccCCCc
Q 004953 215 TGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMP-DLSRIPNLGYLDLSSNQLNGSIPPG 293 (722)
Q Consensus 215 ~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~ip~~ 293 (722)
++..+..+..+++|+.|++++|.+++ ..+..+..+++|+.|++++|.+.+..+ ......+|+.|++++|+++ .+|..
T Consensus 165 ~~~~~~~l~~l~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~ 242 (477)
T 2id5_A 165 TSIPTEALSHLHGLIVLRLRHLNINA-IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYL 242 (477)
T ss_dssp SSCCHHHHTTCTTCCEEEEESCCCCE-ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHH
T ss_pred cccChhHhcccCCCcEEeCCCCcCcE-eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccCHH
Confidence 98777789999999999999999986 356689999999999999998876554 3555669999999999999 67743
Q ss_pred cc--cCCcCEEEccCCcCcccCCccCCCCCCCCEEeCCCCcCcccCChhhhhhccCCCCcccEEEccCCcCCCCCCCC--
Q 004953 294 RL--SLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGSF-- 369 (722)
Q Consensus 294 ~~--~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~ls~N~l~~~~~~~-- 369 (722)
.+ .++|+.|+|++|.+++..+..|..+++|+.|+|++|++++..|..+.. +++|+.|++++|+|+++++..
T Consensus 243 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~L~~N~l~~~~~~~~~ 317 (477)
T 2id5_A 243 AVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRG-----LNYLRVLNVSGNQLTTLEESVFH 317 (477)
T ss_dssp HHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTT-----CTTCCEEECCSSCCSCCCGGGBS
T ss_pred HhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcC-----cccCCEEECCCCcCceeCHhHcC
Confidence 33 369999999999999999999999999999999999999888887764 478999999999999987653
Q ss_pred CCCCceEEEccCCcCcCCCCc
Q 004953 370 NIPPNVTVRLRGNPFCLNTNA 390 (722)
Q Consensus 370 ~~~~l~~l~l~~N~l~~~~~~ 390 (722)
.+++|++|++++|+|.|+|..
T Consensus 318 ~l~~L~~L~l~~N~l~c~c~~ 338 (477)
T 2id5_A 318 SVGNLETLILDSNPLACDCRL 338 (477)
T ss_dssp CGGGCCEEECCSSCEECSGGG
T ss_pred CCcccCEEEccCCCccCccch
Confidence 678999999999999999863
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.6e-35 Score=338.46 Aligned_cols=360 Identities=21% Similarity=0.224 Sum_probs=284.4
Q ss_pred CccccCccccCCCCCCEEECCCCCCccC-----------------CCcccc--CCCCCCEEeccCCcCCCCCCccCCCCC
Q 004953 94 LSGNLSPEIGRLSYLTILDFMWNKISGS-----------------IPKEIG--NIKSLELLLLNGNELTGSLPEELGYLP 154 (722)
Q Consensus 94 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-----------------~p~~~~--~l~~L~~L~L~~n~l~~~~p~~~~~l~ 154 (722)
+++ +|+.|+++++|++|+|++|.+++. +|..++ ++++|++|+|++|.+.+.+|..+++++
T Consensus 195 l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 273 (636)
T 4eco_A 195 ITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP 273 (636)
T ss_dssp EEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCS
T ss_pred Ccc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCC
Confidence 345 788899999999999999999986 999999 999999999999999999999999999
Q ss_pred CCcEEEcccCC-CCC-CCchhhcCc------CCCCEEECCCccccCCCCc--CCCCCCccceeecccCCCCCCCCccCCC
Q 004953 155 KLDRIQIDQNY-ISG-SLPKSFANL------NKTRHFHMNNNSISGQIPP--ELSRLPSLVHMLLDNNNLTGYLPPELSE 224 (722)
Q Consensus 155 ~L~~L~L~~N~-l~~-~~p~~~~~l------~~L~~L~L~~N~l~~~~~~--~l~~l~~L~~L~L~~N~l~~~~~~~l~~ 224 (722)
+|++|++++|+ +++ .+|..+.++ ++|++|++++|.++ .+|. .+.++++|++|++++|++++.+| .+..
T Consensus 274 ~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~ 351 (636)
T 4eco_A 274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGS 351 (636)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEE
T ss_pred CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCC
Confidence 99999999998 998 889988887 99999999999999 7888 89999999999999999998899 8999
Q ss_pred CCCCcEEECcCCCCCCCCcchhccCCCC-CcEEEccCCCCccCCCCCCCC--CCccEEEccCCCCCccCCCccc------
Q 004953 225 LPKLLILQLDNNNFEGTTIPASYSNMSK-LLKLSLRNCSLQGPMPDLSRI--PNLGYLDLSSNQLNGSIPPGRL------ 295 (722)
Q Consensus 225 l~~L~~L~l~~N~l~~~~~~~~~~~l~~-L~~L~L~~N~l~~~~~~l~~l--~~L~~L~Ls~N~l~~~ip~~~~------ 295 (722)
+++|+.|++++|.++ .+|..+..+++ |+.|++++|+++..+..+..+ ++|++|++++|.+++.+|....
T Consensus 352 l~~L~~L~L~~N~l~--~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~ 429 (636)
T 4eco_A 352 EIKLASLNLAYNQIT--EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429 (636)
T ss_dssp EEEESEEECCSSEEE--ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSC
T ss_pred CCCCCEEECCCCccc--cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhccccccc
Confidence 999999999999998 58899999999 999999999999544445554 4899999999999988876533
Q ss_pred --cCCcCEEEccCCcCcccCCccCCCCCCCCEEeCCCCcCcccCChhhhhhcc---CCCCcccEEEccCCcCCCCCCCC-
Q 004953 296 --SLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRT---LNATETFILDFQNNNLTNISGSF- 369 (722)
Q Consensus 296 --~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~---l~~~~L~~L~ls~N~l~~~~~~~- 369 (722)
..+|++|+|++|+++...+..+..+++|++|+|++|+++ .+|..++.... -++++|+.|++++|+++.++..+
T Consensus 430 ~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~ 508 (636)
T 4eco_A 430 FKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFR 508 (636)
T ss_dssp CCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGS
T ss_pred ccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCCccChhhh
Confidence 248999999999999766666778999999999999999 88877654310 01238999999999999887654
Q ss_pred --CCCCceEEEccCCcCcCCCCcccccCCCCCCCCcccCCCCCCCCCCCCCCCCCCccCCCCCCcccccccceEEEEeeC
Q 004953 370 --NIPPNVTVRLRGNPFCLNTNAEQFCGSHSDDDNEIDRSTNSTLDCRAQSCPTDYEYSPTSPIRCFCAAPLLVGYRLKS 447 (722)
Q Consensus 370 --~~~~l~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~ 447 (722)
.+++|+.|++++|++++ ++ ....... .+....+..+........ .+..|.. ....+.+..|++++
T Consensus 509 ~~~l~~L~~L~Ls~N~l~~-ip-~~~~~l~--~L~~L~Ls~N~~ls~N~l-----~~~~p~~----l~~l~~L~~L~Ls~ 575 (636)
T 4eco_A 509 ATTLPYLVGIDLSYNSFSK-FP-TQPLNSS--TLKGFGIRNQRDAQGNRT-----LREWPEG----ITLCPSLTQLQIGS 575 (636)
T ss_dssp TTTCTTCCEEECCSSCCSS-CC-CGGGGCS--SCCEEECCSCBCTTCCBC-----CCCCCTT----GGGCSSCCEEECCS
T ss_pred hccCCCcCEEECCCCCCCC-cC-hhhhcCC--CCCEEECCCCcccccCcc-----cccChHH----HhcCCCCCEEECCC
Confidence 68999999999999987 43 2222111 122233322210000000 0111111 22345678899999
Q ss_pred CCCcCCCchhHHHHHHHhhhcccccceee
Q 004953 448 PGLSYFPAYKNLFEEYMTSGLKLNLYQLD 476 (722)
Q Consensus 448 n~~~~~~p~~~~~~~~~~~~l~ls~n~l~ 476 (722)
|.+ +.+|..-. .--+.|++++|.+.
T Consensus 576 N~l-~~ip~~~~---~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 576 NDI-RKVNEKIT---PNISVLDIKDNPNI 600 (636)
T ss_dssp SCC-CBCCSCCC---TTCCEEECCSCTTC
T ss_pred CcC-CccCHhHh---CcCCEEECcCCCCc
Confidence 999 77775411 11145677777554
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.8e-34 Score=330.92 Aligned_cols=322 Identities=19% Similarity=0.186 Sum_probs=259.4
Q ss_pred CCCCCCC--CceeecCCCCCC----CCccceeEEEcCCCCCccccCccccCCCCCCEEECCCCCCccCCCccccCCCCCC
Q 004953 60 GDPCTSN--WTGVLCFNTTMD----DGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLE 133 (722)
Q Consensus 60 ~~~C~~~--w~gv~C~~~~~~----~~~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 133 (722)
...|.|. +..+.|.+.... .-..+++.|++++|.+++..|..|.++++|++|+|++|.+++..|..|.++++|+
T Consensus 5 ~~~C~~~~~~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 84 (606)
T 3t6q_A 5 DQKCIEKEVNKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLD 84 (606)
T ss_dssp -CCCEEEETTTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCC
T ss_pred cCceecccCCceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccC
Confidence 3445543 566888765422 2345799999999999999899999999999999999999999999999999999
Q ss_pred EEeccCCcCCCCCCccCCCCCCCcEEEcccCCCCCCCchhhcCcCCCCEEECCCccccCCCCcCCCCCCccceeecccCC
Q 004953 134 LLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNN 213 (722)
Q Consensus 134 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~ 213 (722)
+|+|++|.+++..|..|+++++|++|++++|.+++..+..|.++++|++|++++|.+++.....+..+++|++|++++|+
T Consensus 85 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 164 (606)
T 3t6q_A 85 TLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA 164 (606)
T ss_dssp EEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSC
T ss_pred eeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCc
Confidence 99999999998899999999999999999999998778889999999999999999998655556669999999999999
Q ss_pred CCCCCCccCCCCCCCc--EEECcCCCCCCCCcchhccC------------------------------------------
Q 004953 214 LTGYLPPELSELPKLL--ILQLDNNNFEGTTIPASYSN------------------------------------------ 249 (722)
Q Consensus 214 l~~~~~~~l~~l~~L~--~L~l~~N~l~~~~~~~~~~~------------------------------------------ 249 (722)
+++..+..++.+++|+ .|++++|.+++ ..|..+..
T Consensus 165 l~~~~~~~~~~l~~L~~l~L~l~~n~l~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i 243 (606)
T 3t6q_A 165 IHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDI 243 (606)
T ss_dssp CCEECHHHHHTTTTCCSEEEECTTCCCCE-ECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCC
T ss_pred ccccChhhhhhhcccceeEEecCCCccCc-cChhHhhhccccccccCCchhHHHHhhhccccchhheechhhcccccccc
Confidence 9988888888899998 89999998875 23333221
Q ss_pred -------C--CCCcEEEccCCCCccCCCC-CCCCCCccEEEccCCCCCccCCCcccc-CCcCEEEccCCcCcccCCccCC
Q 004953 250 -------M--SKLLKLSLRNCSLQGPMPD-LSRIPNLGYLDLSSNQLNGSIPPGRLS-LNITTIKLSNNKLTGTIPSNFS 318 (722)
Q Consensus 250 -------l--~~L~~L~L~~N~l~~~~~~-l~~l~~L~~L~Ls~N~l~~~ip~~~~~-~~L~~L~L~~N~l~~~~~~~~~ 318 (722)
+ .+|+.|++++|.+++..+. +..+++|++|++++|+++ .+|..... ++|++|++++|++++..|..+.
T Consensus 244 ~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 322 (606)
T 3t6q_A 244 SPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISAS 322 (606)
T ss_dssp CGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGG
T ss_pred ChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhh
Confidence 0 1577788888888776664 778888888888888888 67765332 6888888888888888788888
Q ss_pred CCCCCCEEeCCCCcCcccCChhhhhhccCCCCcccEEEccCCcCCCCC---CCC-CCCCceEEEccCCcCcCC
Q 004953 319 GLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNIS---GSF-NIPPNVTVRLRGNPFCLN 387 (722)
Q Consensus 319 ~l~~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~ls~N~l~~~~---~~~-~~~~l~~l~l~~N~l~~~ 387 (722)
.+++|++|++++|.+.+.+|..... .+++|+.|++++|.++++. ..+ .++++++|++++|++.+.
T Consensus 323 ~l~~L~~L~l~~n~~~~~~~~~~~~----~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 391 (606)
T 3t6q_A 323 NFPSLTHLSIKGNTKRLELGTGCLE----NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL 391 (606)
T ss_dssp GCTTCSEEECCSCSSCCBCCSSTTT----TCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEE
T ss_pred ccCcCCEEECCCCCcccccchhhhh----ccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcC
Confidence 8888888888888888777765222 2467788888888887753 334 677788888888877543
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.8e-33 Score=324.29 Aligned_cols=133 Identities=21% Similarity=0.235 Sum_probs=67.2
Q ss_pred cceeEEEcCCCCCccccCccccCCCCCCEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEEc
Q 004953 82 LHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQI 161 (722)
Q Consensus 82 ~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 161 (722)
.+++.|++++|.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|.+++..|..|+++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 34555555555555555555555555555555555555555555555555555555555555544555555555555555
Q ss_pred ccCCCCCCCchhhcCcCCCCEEECCCccccC-CCCcCCCCCCccceeecccCCC
Q 004953 162 DQNYISGSLPKSFANLNKTRHFHMNNNSISG-QIPPELSRLPSLVHMLLDNNNL 214 (722)
Q Consensus 162 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~~~~l~~l~~L~~L~L~~N~l 214 (722)
++|.+++..+..|+++++|++|++++|.+++ .+|..+.++++|++|++++|++
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l 165 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 165 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCC
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcc
Confidence 5555544443444444444444444444433 2344444444444444444433
No 11
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.9e-34 Score=325.70 Aligned_cols=199 Identities=19% Similarity=0.203 Sum_probs=170.8
Q ss_pred CCCceeecCCCC-----CC-CCccceeEEEcCCCCCccccCccccCCCCCCEEECCCCCCccCCCccccCCCCCCEEecc
Q 004953 65 SNWTGVLCFNTT-----MD-DGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLN 138 (722)
Q Consensus 65 ~~w~gv~C~~~~-----~~-~~~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 138 (722)
|.|.|+ |+... .+ ...++++.|++++|.+++..|..|.++++|++|+|++|++++..|..|.++++|++|+|+
T Consensus 4 C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 82 (549)
T 2z81_A 4 CDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS 82 (549)
T ss_dssp ECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred CCCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECC
Confidence 478888 85431 11 234589999999999999989999999999999999999999888999999999999999
Q ss_pred CCcCCCCCCccCCCCCCCcEEEcccCCCCCC-CchhhcCcCCCCEEECCCccccCCC-CcCCCCCCccceeecccCCCCC
Q 004953 139 GNELTGSLPEELGYLPKLDRIQIDQNYISGS-LPKSFANLNKTRHFHMNNNSISGQI-PPELSRLPSLVHMLLDNNNLTG 216 (722)
Q Consensus 139 ~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~-~~~l~~l~~L~~L~L~~N~l~~ 216 (722)
+|++++..|..|+++++|++|++++|.+++. .|..+.++++|++|++++|.+.+.+ +..|.++++|++|++++|++++
T Consensus 83 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 162 (549)
T 2z81_A 83 DNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162 (549)
T ss_dssp TSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred CCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence 9999988888899999999999999999873 5778999999999999999954444 4689999999999999999999
Q ss_pred CCCccCCCCCCCcEEECcCCCCCCCCcchhc-cCCCCCcEEEccCCCCccC
Q 004953 217 YLPPELSELPKLLILQLDNNNFEGTTIPASY-SNMSKLLKLSLRNCSLQGP 266 (722)
Q Consensus 217 ~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~-~~l~~L~~L~L~~N~l~~~ 266 (722)
..|..+..+++|+.|+++.|.+. .+|..+ ..+++|++|++++|++++.
T Consensus 163 ~~~~~l~~l~~L~~L~l~~n~~~--~~~~~~~~~l~~L~~L~L~~n~l~~~ 211 (549)
T 2z81_A 163 YQSQSLKSIRDIHHLTLHLSESA--FLLEIFADILSSVRYLELRDTNLARF 211 (549)
T ss_dssp ECTTTTTTCSEEEEEEEECSBST--THHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred cChhhhhccccCceEecccCccc--ccchhhHhhcccccEEEccCCccccc
Confidence 99999999988888888888876 345443 5678888888888888763
No 12
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=6.2e-34 Score=309.81 Aligned_cols=323 Identities=19% Similarity=0.166 Sum_probs=237.9
Q ss_pred CCCCCCCCCCCCCCceeec---CCC----C--C-----CCCccceeEEEcCCCCCccccCccccCCCCCCEEECCCCCCc
Q 004953 54 LSNWNRGDPCTSNWTGVLC---FNT----T--M-----DDGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKIS 119 (722)
Q Consensus 54 l~~w~~~~~C~~~w~gv~C---~~~----~--~-----~~~~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 119 (722)
+++|.....|.+.|.+..| +-. . . .-.+.+++.|+++++.++...+..|..+++|++|+|++|.++
T Consensus 3 ~~~~~~~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~ 82 (390)
T 3o6n_A 3 VKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE 82 (390)
T ss_dssp ----CCEECBCC------EEEESCEECSSCCCCEESCSSGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC
T ss_pred cCCCCCccceehhhhhhccceeeeeeecccccccccccccccCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc
Confidence 4678777667665554444 210 0 0 013468999999999988766566889999999999999999
Q ss_pred cCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEEcccCCCCCCCchhhcCcCCCCEEECCCccccCCCCcCCC
Q 004953 120 GSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELS 199 (722)
Q Consensus 120 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~ 199 (722)
+..+..|.++++|++|+|++|.+++..|..|.++++|++|++++|+++...+..|.++++|++|++++|.+++..+..+.
T Consensus 83 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 162 (390)
T 3o6n_A 83 EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ 162 (390)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTS
T ss_pred ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhcc
Confidence 88888999999999999999999988888899999999999999999976666789999999999999999988888899
Q ss_pred CCCccceeecccCCCCCCCCccCCCCCCCcEEECcCCCCCCCCcchhc---------------cCCCCCcEEEccCCCCc
Q 004953 200 RLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASY---------------SNMSKLLKLSLRNCSLQ 264 (722)
Q Consensus 200 ~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~---------------~~l~~L~~L~L~~N~l~ 264 (722)
.+++|++|++++|++++.. +..+++|+.|++++|.+++...+..+ ...++|+.|++++|+++
T Consensus 163 ~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~ 239 (390)
T 3o6n_A 163 ATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLT 239 (390)
T ss_dssp SCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCC
T ss_pred CCCCCCEEECCCCcCCccc---cccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCc
Confidence 9999999999999998653 34455666666655555431111111 12356777777777777
Q ss_pred cCCCCCCCCCCccEEEccCCCCCccCCCccc-cCCcCEEEccCCcCcccCCccCCCCCCCCEEeCCCCcCcccCChhhhh
Q 004953 265 GPMPDLSRIPNLGYLDLSSNQLNGSIPPGRL-SLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQ 343 (722)
Q Consensus 265 ~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~-~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ip~~~~~ 343 (722)
+. +.+..+++|++|++++|.+++..|.... .++|++|+|++|++++. |..+..+++|++|++++|+++ .+|..+..
T Consensus 240 ~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~ 316 (390)
T 3o6n_A 240 DT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQPQ 316 (390)
T ss_dssp CC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHHH
T ss_pred cc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc-CcccCCCCCCCEEECCCCcce-ecCccccc
Confidence 53 4567778888888888888765554422 25788888888888754 455677888888888888887 56666655
Q ss_pred hccCCCCcccEEEccCCcCCCCCCCCCCCCceEEEccCCcCcCCC
Q 004953 344 SRTLNATETFILDFQNNNLTNISGSFNIPPNVTVRLRGNPFCLNT 388 (722)
Q Consensus 344 ~~~l~~~~L~~L~ls~N~l~~~~~~~~~~~l~~l~l~~N~l~~~~ 388 (722)
+ ++|+.|++++|+++.++ ...+++++.|++++|+|.|.+
T Consensus 317 l-----~~L~~L~L~~N~i~~~~-~~~~~~L~~L~l~~N~~~~~~ 355 (390)
T 3o6n_A 317 F-----DRLENLYLDHNSIVTLK-LSTHHTLKNLTLSHNDWDCNS 355 (390)
T ss_dssp H-----TTCSEEECCSSCCCCCC-CCTTCCCSEEECCSSCEEHHH
T ss_pred c-----CcCCEEECCCCccceeC-chhhccCCEEEcCCCCccchh
Confidence 4 56788888888888774 225677888888888887764
No 13
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=7.1e-33 Score=316.19 Aligned_cols=296 Identities=21% Similarity=0.245 Sum_probs=206.6
Q ss_pred cceeEEEcCCCCCccccCccccCCCCCCEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEEc
Q 004953 82 LHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQI 161 (722)
Q Consensus 82 ~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 161 (722)
++++.|++++|.+++..+..|.++++|++|+|++|++++..|..|.++++|++|+|++|+++ .+|.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence 57888888888888777778888888888888888888877888888888888888888887 55555 7888888888
Q ss_pred ccCCCCCC-CchhhcCcCCCCEEECCCccccCC-------------------------CCcCCCCCC-------------
Q 004953 162 DQNYISGS-LPKSFANLNKTRHFHMNNNSISGQ-------------------------IPPELSRLP------------- 202 (722)
Q Consensus 162 ~~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~-------------------------~~~~l~~l~------------- 202 (722)
++|++++. .|..|.++++|++|++++|.+++. .|..+..+.
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~ 208 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSL 208 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSC
T ss_pred CCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccc
Confidence 88888763 457888888888888888877542 122221111
Q ss_pred --------------------------------------------------------------------ccceeecccCCC
Q 004953 203 --------------------------------------------------------------------SLVHMLLDNNNL 214 (722)
Q Consensus 203 --------------------------------------------------------------------~L~~L~L~~N~l 214 (722)
+|++|++++|.+
T Consensus 209 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l 288 (562)
T 3a79_B 209 FSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTI 288 (562)
T ss_dssp CCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEE
T ss_pred hhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEe
Confidence 444455555555
Q ss_pred CCCCCccC-----------------------------------------------------CCCCCCcEEECcCCCCCCC
Q 004953 215 TGYLPPEL-----------------------------------------------------SELPKLLILQLDNNNFEGT 241 (722)
Q Consensus 215 ~~~~~~~l-----------------------------------------------------~~l~~L~~L~l~~N~l~~~ 241 (722)
++.+|..+ ..+++|++|++++|.+++
T Consensus 289 ~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~- 367 (562)
T 3a79_B 289 TERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTD- 367 (562)
T ss_dssp CSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCT-
T ss_pred eccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCcccc-
Confidence 55555443 455667777777777765
Q ss_pred CcchhccCCCCCcEEEccCCCCccCC--C-CCCCCCCccEEEccCCCCCccCCCcccc--CCcCEEEccCCcCcccCCcc
Q 004953 242 TIPASYSNMSKLLKLSLRNCSLQGPM--P-DLSRIPNLGYLDLSSNQLNGSIPPGRLS--LNITTIKLSNNKLTGTIPSN 316 (722)
Q Consensus 242 ~~~~~~~~l~~L~~L~L~~N~l~~~~--~-~l~~l~~L~~L~Ls~N~l~~~ip~~~~~--~~L~~L~L~~N~l~~~~~~~ 316 (722)
..|..+..+++|++|++++|++++.. + .+..+++|++|++++|++++.+|...+. ++|++|++++|++++.+|..
T Consensus 368 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 447 (562)
T 3a79_B 368 SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRC 447 (562)
T ss_dssp TTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSS
T ss_pred chhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhh
Confidence 35666677777777777777776533 1 3666777777777777777556654332 57777777777776655544
Q ss_pred CCCCCCCCEEeCCCCcCcccCChhhhhhccCCCCcccEEEccCCcCCCCCCC-C-CCCCceEEEccCCcCcCCCC
Q 004953 317 FSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGS-F-NIPPNVTVRLRGNPFCLNTN 389 (722)
Q Consensus 317 ~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~ls~N~l~~~~~~-~-~~~~l~~l~l~~N~l~~~~~ 389 (722)
+. ++|+.|+|++|+++ .+|..++. +++|+.|++++|+|+++++. + .+++++.|++++|+|.|+|+
T Consensus 448 l~--~~L~~L~L~~N~l~-~ip~~~~~-----l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 448 LP--PKVKVLDLHNNRIM-SIPKDVTH-----LQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CC--TTCSEEECCSSCCC-CCCTTTTS-----SCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred hc--CcCCEEECCCCcCc-ccChhhcC-----CCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 43 57777777777776 66666543 36778888888888877765 4 67778888888888888775
No 14
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.6e-33 Score=316.80 Aligned_cols=158 Identities=23% Similarity=0.348 Sum_probs=107.6
Q ss_pred CCCCCCcEEECcCCCCCCCCcchhccCCCCCcEEEccCCCCcc--CCC-CCCCCCCccEEEccCCCCCccCCCcccc--C
Q 004953 223 SELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQG--PMP-DLSRIPNLGYLDLSSNQLNGSIPPGRLS--L 297 (722)
Q Consensus 223 ~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~-~l~~l~~L~~L~Ls~N~l~~~ip~~~~~--~ 297 (722)
..+++|++|++++|.+++ ..|..+..+++|++|++++|++++ ..| .+..+++|++|++++|++++.+|...+. +
T Consensus 321 ~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~ 399 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTD-TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK 399 (520)
T ss_dssp SSCCCCCEEECCSSCCCT-TTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred hhCCcccEEEeECCccCh-hhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCc
Confidence 455666667777776665 356666667777777777777764 222 2566677777777777776546654222 5
Q ss_pred CcCEEEccCCcCcccCCccCCCCCCCCEEeCCCCcCcccCChhhhhhccCCCCcccEEEccCCcCCCCCCC-C-CCCCce
Q 004953 298 NITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGS-F-NIPPNV 375 (722)
Q Consensus 298 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~ls~N~l~~~~~~-~-~~~~l~ 375 (722)
+|++|++++|++++..|..+. ++|+.|++++|+++ .+|..++. +++|+.|++++|+|+++++. + .+++++
T Consensus 400 ~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~-----l~~L~~L~L~~N~l~~l~~~~~~~l~~L~ 471 (520)
T 2z7x_B 400 SLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVK-----LEALQELNVASNQLKSVPDGIFDRLTSLQ 471 (520)
T ss_dssp TCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGG-----CTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhc-----CCCCCEEECCCCcCCccCHHHhccCCccc
Confidence 677777777777666655543 67777777777777 67776653 36778888888888887765 4 677888
Q ss_pred EEEccCCcCcCCCC
Q 004953 376 TVRLRGNPFCLNTN 389 (722)
Q Consensus 376 ~l~l~~N~l~~~~~ 389 (722)
+|++++|+|.|+|+
T Consensus 472 ~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 472 KIWLHTNPWDCSCP 485 (520)
T ss_dssp EEECCSSCBCCCHH
T ss_pred EEECcCCCCcccCC
Confidence 88888888888775
No 15
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.2e-33 Score=322.14 Aligned_cols=300 Identities=20% Similarity=0.264 Sum_probs=270.8
Q ss_pred ceeEEEcCCCCCccccCccccCCCCCCEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEEcc
Q 004953 83 HLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQID 162 (722)
Q Consensus 83 ~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 162 (722)
+++.|++++|.+++..+..|..+++|++|++++|.++ .+|..+.++++|++|++++|.+++..|..+..+++|++|+++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 7999999999999888888999999999999999998 788899999999999999999998888899999999999999
Q ss_pred cCCCCCCCch-hhcCcCCCCEEECCCccccCCC--CcCCCCCCccceeecccCCCCCCCCccCCCCCCCcEEECcCCCCC
Q 004953 163 QNYISGSLPK-SFANLNKTRHFHMNNNSISGQI--PPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFE 239 (722)
Q Consensus 163 ~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~--~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~ 239 (722)
+|.+.+.++. .+.++++|++|++++|.+++.. +..+..+++|++|++++|++++..+..+..+++|+.|++++|.++
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 413 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence 9999866654 5999999999999999998766 778999999999999999999999999999999999999999998
Q ss_pred CCCcchhccCCCCCcEEEccCCCCccCCCC-CCCCCCccEEEccCCCCCcc-CCC-ccc--cCCcCEEEccCCcCcccCC
Q 004953 240 GTTIPASYSNMSKLLKLSLRNCSLQGPMPD-LSRIPNLGYLDLSSNQLNGS-IPP-GRL--SLNITTIKLSNNKLTGTIP 314 (722)
Q Consensus 240 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-l~~l~~L~~L~Ls~N~l~~~-ip~-~~~--~~~L~~L~L~~N~l~~~~~ 314 (722)
+...+..+..+++|+.|++++|.+++..+. +..+++|++|++++|++++. ++. ..+ .++|++|++++|++++..|
T Consensus 414 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 493 (606)
T 3t6q_A 414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ 493 (606)
T ss_dssp CCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECT
T ss_pred CcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccCh
Confidence 743345689999999999999999987764 88999999999999999863 222 112 3699999999999999999
Q ss_pred ccCCCCCCCCEEeCCCCcCcccCChhhhhhccCCCCcccEEEccCCcCCCCCCCC--CCCCceEEEccCCcCcCCCC
Q 004953 315 SNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGSF--NIPPNVTVRLRGNPFCLNTN 389 (722)
Q Consensus 315 ~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~ls~N~l~~~~~~~--~~~~l~~l~l~~N~l~~~~~ 389 (722)
..|..+++|++|+|++|++++..|..+..+ +.| .|++++|+++++++.. .+++++.+++++|||.|+|+
T Consensus 494 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l-----~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 494 HAFTSLKMMNHVDLSHNRLTSSSIEALSHL-----KGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp TTTTTCTTCCEEECCSSCCCGGGGGGGTTC-----CSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred hhhccccCCCEEECCCCccCcCChhHhCcc-----ccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 999999999999999999999998888654 678 9999999999987654 68899999999999999986
No 16
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=9.6e-33 Score=322.55 Aligned_cols=319 Identities=22% Similarity=0.255 Sum_probs=241.3
Q ss_pred CCCCCCceeecCCCCC---C-CCccceeEEEcCCCCCccccCccccCCCCCCEEECCCCCCccCCCccccCCCCCCEEec
Q 004953 62 PCTSNWTGVLCFNTTM---D-DGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLL 137 (722)
Q Consensus 62 ~C~~~w~gv~C~~~~~---~-~~~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 137 (722)
+|.|.++.+.|..... + +...+++.|++++|.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|
T Consensus 1 ~C~~~~~~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 80 (680)
T 1ziw_A 1 KCTVSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNL 80 (680)
T ss_dssp ---CBSSEEECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEEC
T ss_pred CceeECCeeECCCCCccccccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEEC
Confidence 3777788888875432 2 23468999999999999888888999999999999999999999999999999999999
Q ss_pred cCCcCCCCCCccCCCCCCCcEEEcccCCCCCCCchhhcCcCCCCEEECCCccccCCCCcCCCCCCccceeecccCCCCCC
Q 004953 138 NGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGY 217 (722)
Q Consensus 138 ~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~ 217 (722)
++|.+++..+..|+++++|++|++++|++++..|..|.++++|++|++++|.+++..+..+.++++|++|++++|++++.
T Consensus 81 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 160 (680)
T 1ziw_A 81 QHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL 160 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCB
T ss_pred CCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccccc
Confidence 99999976666899999999999999999988889999999999999999999999899999999999999999999987
Q ss_pred CCccCC--CCCCCcEEECcCCCCCCCCcchhccCCCC---------------------------CcEEEccCCCCccCCC
Q 004953 218 LPPELS--ELPKLLILQLDNNNFEGTTIPASYSNMSK---------------------------LLKLSLRNCSLQGPMP 268 (722)
Q Consensus 218 ~~~~l~--~l~~L~~L~l~~N~l~~~~~~~~~~~l~~---------------------------L~~L~L~~N~l~~~~~ 268 (722)
.+..+. .+++|+.|++++|.+++ ..|..+..+++ |+.|++++|.+++..+
T Consensus 161 ~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~ 239 (680)
T 1ziw_A 161 KSEELDIFANSSLKKLELSSNQIKE-FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN 239 (680)
T ss_dssp CHHHHGGGTTCEESEEECTTCCCCC-BCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECT
T ss_pred CHHHhhccccccccEEECCCCcccc-cChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccCh
Confidence 776554 56899999999999987 45666665544 5555555555555443
Q ss_pred C-CCCCC--CccEEEccCCCCCccCCCccc-cCCcCEEEccCCcCcccCCccCCCCCCCCEEeCCCCcCcccC-----Ch
Q 004953 269 D-LSRIP--NLGYLDLSSNQLNGSIPPGRL-SLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSI-----PS 339 (722)
Q Consensus 269 ~-l~~l~--~L~~L~Ls~N~l~~~ip~~~~-~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~i-----p~ 339 (722)
. +..++ +|+.|++++|++++..|.... .++|++|++++|++++..|..|..+++|+.|++++|...+.+ |.
T Consensus 240 ~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~ 319 (680)
T 1ziw_A 240 TTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPK 319 (680)
T ss_dssp TTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCE
T ss_pred hHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccc
Confidence 2 44443 366666666666644333211 246666666666666666666666666666666665544322 21
Q ss_pred ----hhhhhccCCCCcccEEEccCCcCCCCCCC-C-CCCCceEEEccCCcCcC
Q 004953 340 ----SIWQSRTLNATETFILDFQNNNLTNISGS-F-NIPPNVTVRLRGNPFCL 386 (722)
Q Consensus 340 ----~~~~~~~l~~~~L~~L~ls~N~l~~~~~~-~-~~~~l~~l~l~~N~l~~ 386 (722)
.+. .+++|+.|++++|+++++++. + .++++++|++++|.+.+
T Consensus 320 i~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~ 367 (680)
T 1ziw_A 320 IDDFSFQ-----WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSL 367 (680)
T ss_dssp ECTTTTT-----TCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCC
T ss_pred cChhhcc-----cCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhh
Confidence 121 346778888888888887554 3 67788888888887653
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.4e-33 Score=328.91 Aligned_cols=293 Identities=17% Similarity=0.211 Sum_probs=255.9
Q ss_pred CccceeEEEcCCCCCcc-----------------ccCcccc--CCCCCCEEECCCCCCccCCCccccCCCCCCEEeccCC
Q 004953 80 GYLHLRELQLLNLNLSG-----------------NLSPEIG--RLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGN 140 (722)
Q Consensus 80 ~~~~l~~L~L~~~~l~~-----------------~~~~~~~--~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 140 (722)
.+++|+.|+|++|.+++ .+|+.++ ++++|++|+|++|.+.+.+|..|+++++|++|+|++|
T Consensus 446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N 525 (876)
T 4ecn_A 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN 525 (876)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTC
T ss_pred cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCC
Confidence 46789999999999999 4899988 9999999999999999999999999999999999999
Q ss_pred c-CCC-CCCccCCC-------CCCCcEEEcccCCCCCCCch--hhcCcCCCCEEECCCccccCCCCcCCCCCCccceeec
Q 004953 141 E-LTG-SLPEELGY-------LPKLDRIQIDQNYISGSLPK--SFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLL 209 (722)
Q Consensus 141 ~-l~~-~~p~~~~~-------l~~L~~L~L~~N~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L 209 (722)
+ +++ .+|..++. +++|++|+|++|.++ .+|. .|.++++|+.|+|++|.++ .+| .|..+++|++|++
T Consensus 526 ~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~L 602 (876)
T 4ecn_A 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKL 602 (876)
T ss_dssp TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEEC
T ss_pred CCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEEC
Confidence 8 987 78875554 459999999999999 7888 9999999999999999999 777 8999999999999
Q ss_pred ccCCCCCCCCccCCCCCC-CcEEECcCCCCCCCCcchhccCCCC--CcEEEccCCCCccCCCCCC------CCCCccEEE
Q 004953 210 DNNNLTGYLPPELSELPK-LLILQLDNNNFEGTTIPASYSNMSK--LLKLSLRNCSLQGPMPDLS------RIPNLGYLD 280 (722)
Q Consensus 210 ~~N~l~~~~~~~l~~l~~-L~~L~l~~N~l~~~~~~~~~~~l~~--L~~L~L~~N~l~~~~~~l~------~l~~L~~L~ 280 (722)
++|+++ .+|..+..+++ |+.|++++|.++ .+|..+..++. |+.|+|++|++++.+|.+. .+++|+.|+
T Consensus 603 s~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~--~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~ 679 (876)
T 4ecn_A 603 DYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK--YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVT 679 (876)
T ss_dssp CSSCCS-CCCTTSCEECTTCCEEECCSSCCC--SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEE
T ss_pred cCCccc-cchHHHhhccccCCEEECcCCCCC--cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEE
Confidence 999999 88889999999 999999999998 57888877654 9999999999998776443 456899999
Q ss_pred ccCCCCCccCCCccc--cCCcCEEEccCCcCcccCCccCCCC-------CCCCEEeCCCCcCcccCChhhhhhccCCCCc
Q 004953 281 LSSNQLNGSIPPGRL--SLNITTIKLSNNKLTGTIPSNFSGL-------PRLQRLFIANNSLSGSIPSSIWQSRTLNATE 351 (722)
Q Consensus 281 Ls~N~l~~~ip~~~~--~~~L~~L~L~~N~l~~~~~~~~~~l-------~~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~ 351 (722)
|++|.++ .+|...+ .++|+.|+|++|+++...+..+... ++|+.|+|++|+++ .+|..++.. .+++
T Consensus 680 Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~---~l~~ 754 (876)
T 4ecn_A 680 LSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRAT---TLPY 754 (876)
T ss_dssp CCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTT---TCTT
T ss_pred ccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhc---cCCC
Confidence 9999999 7887654 3699999999999994444344332 39999999999999 889887510 3478
Q ss_pred ccEEEccCCcCCCCCCCC-CCCCceEEEccCCc
Q 004953 352 TFILDFQNNNLTNISGSF-NIPPNVTVRLRGNP 383 (722)
Q Consensus 352 L~~L~ls~N~l~~~~~~~-~~~~l~~l~l~~N~ 383 (722)
|+.|+|++|+|++++..+ .+++|+.|+|++|+
T Consensus 755 L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~ 787 (876)
T 4ecn_A 755 LSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQR 787 (876)
T ss_dssp CCEEECCSSCCSSCCCGGGGCTTCCEEECCCCB
T ss_pred cCEEEeCCCCCCccchhhhcCCCCCEEECCCCC
Confidence 999999999999987776 89999999999876
No 18
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.6e-33 Score=321.85 Aligned_cols=324 Identities=18% Similarity=0.170 Sum_probs=248.4
Q ss_pred CCCCCCCCCCCCCC---CceeecCCC------CC-----CCCccceeEEEcCCCCCccccCccccCCCCCCEEECCCCCC
Q 004953 53 KLSNWNRGDPCTSN---WTGVLCFNT------TM-----DDGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKI 118 (722)
Q Consensus 53 ~l~~w~~~~~C~~~---w~gv~C~~~------~~-----~~~~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l 118 (722)
.+++|.....|... |.++.|+.. .. .-.+.+++.|+++++.+....+..|..+++|++|+|++|.+
T Consensus 8 ~l~~~~~~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l 87 (597)
T 3oja_B 8 NVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI 87 (597)
T ss_dssp ---CCCSEECCCCC--CCSEEECSCEECSSCCCCEESCSSGGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCC
T ss_pred cccCCCCCCcCcccCcCceeEecCceecccccccccCcccccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCC
Confidence 46788876666543 655555311 00 11245789999999999877666788999999999999999
Q ss_pred ccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEEcccCCCCCCCchhhcCcCCCCEEECCCccccCCCCcCC
Q 004953 119 SGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPEL 198 (722)
Q Consensus 119 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l 198 (722)
++..|..|..+++|++|+|++|.+++..|..|+++++|++|+|++|.+++..+..|.++++|++|+|++|.+++..|..|
T Consensus 88 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 167 (597)
T 3oja_B 88 EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF 167 (597)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTT
T ss_pred CCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhh
Confidence 98888899999999999999999998888889999999999999999997777778999999999999999999888899
Q ss_pred CCCCccceeecccCCCCCCCCccCCCCCCCcEEECcCCCCCCCCcchhc---------------cCCCCCcEEEccCCCC
Q 004953 199 SRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASY---------------SNMSKLLKLSLRNCSL 263 (722)
Q Consensus 199 ~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~---------------~~l~~L~~L~L~~N~l 263 (722)
..+++|++|++++|.+++.. +..+++|+.|++++|.+++...|..+ ...++|+.|+|++|.+
T Consensus 168 ~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l 244 (597)
T 3oja_B 168 QATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNL 244 (597)
T ss_dssp TTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCC
T ss_pred hcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCC
Confidence 99999999999999998753 34455666666666655432111111 1124677888888887
Q ss_pred ccCCCCCCCCCCccEEEccCCCCCccCCCccc-cCCcCEEEccCCcCcccCCccCCCCCCCCEEeCCCCcCcccCChhhh
Q 004953 264 QGPMPDLSRIPNLGYLDLSSNQLNGSIPPGRL-SLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIW 342 (722)
Q Consensus 264 ~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~-~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ip~~~~ 342 (722)
++. +.+..+++|+.|+|++|.+++.+|.... .++|+.|+|++|.+++. |..+..+++|+.|+|++|.++ .+|..+.
T Consensus 245 ~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~ 321 (597)
T 3oja_B 245 TDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQP 321 (597)
T ss_dssp CCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHH
T ss_pred CCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCC-ccCcccc
Confidence 753 5577788888888888888866665432 26888888888888864 556677888888888888888 6777776
Q ss_pred hhccCCCCcccEEEccCCcCCCCCCCCCCCCceEEEccCCcCcCCC
Q 004953 343 QSRTLNATETFILDFQNNNLTNISGSFNIPPNVTVRLRGNPFCLNT 388 (722)
Q Consensus 343 ~~~~l~~~~L~~L~ls~N~l~~~~~~~~~~~l~~l~l~~N~l~~~~ 388 (722)
.+ ++|+.|++++|.|++++ ...+++|+.|++++|+|.|.+
T Consensus 322 ~l-----~~L~~L~L~~N~l~~~~-~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 322 QF-----DRLENLYLDHNSIVTLK-LSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp HH-----TTCSEEECCSSCCCCCC-CCTTCCCSEEECCSSCEEHHH
T ss_pred cC-----CCCCEEECCCCCCCCcC-hhhcCCCCEEEeeCCCCCChh
Confidence 54 67888888888888774 225678888899999888775
No 19
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.6e-32 Score=315.70 Aligned_cols=317 Identities=18% Similarity=0.253 Sum_probs=241.9
Q ss_pred ceeecCCCCC---CCCc-cceeEEEcCCCCCccccCccccCCCCCCEEECCCCCCccCCCccccCCCCCCEEeccCCcCC
Q 004953 68 TGVLCFNTTM---DDGY-LHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELT 143 (722)
Q Consensus 68 ~gv~C~~~~~---~~~~-~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 143 (722)
..+.|....+ +.++ ..++.|||++|.|++..+..|.++++|++|||++|+|++..|.+|.++++|++|+|++|+|+
T Consensus 34 ~~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~ 113 (635)
T 4g8a_A 34 ITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 113 (635)
T ss_dssp TEEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred CEEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC
Confidence 3477875442 3333 47999999999999888889999999999999999999888889999999999999999999
Q ss_pred CCCCccCCCCCCCcEEEcccCCCCCCCchhhcCcCCCCEEECCCccccCC-CCcCCCCCCccceeecccCCCCCCCCccC
Q 004953 144 GSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQ-IPPELSRLPSLVHMLLDNNNLTGYLPPEL 222 (722)
Q Consensus 144 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~~~~l~~l~~L~~L~L~~N~l~~~~~~~l 222 (722)
+..+..|.++++|++|+|++|++++..+..|+++++|++|++++|.+++. .|..+..+++|++|++++|++++..+..+
T Consensus 114 ~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l 193 (635)
T 4g8a_A 114 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 193 (635)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGG
T ss_pred CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccc
Confidence 87778899999999999999999988888899999999999999999764 57788889999999999988764322111
Q ss_pred C-------------------------------------------------------------------------------
Q 004953 223 S------------------------------------------------------------------------------- 223 (722)
Q Consensus 223 ~------------------------------------------------------------------------------- 223 (722)
.
T Consensus 194 ~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~ 273 (635)
T 4g8a_A 194 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS 273 (635)
T ss_dssp HHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTT
T ss_pred cchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccc
Confidence 0
Q ss_pred --------------------------------------------------------------------------------
Q 004953 224 -------------------------------------------------------------------------------- 223 (722)
Q Consensus 224 -------------------------------------------------------------------------------- 223 (722)
T Consensus 274 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~ 353 (635)
T 4g8a_A 274 ALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKR 353 (635)
T ss_dssp TTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCE
T ss_pred ccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhh
Confidence
Q ss_pred ---------------CCCCCcEEECcCCCCCCCC----------------------------------------------
Q 004953 224 ---------------ELPKLLILQLDNNNFEGTT---------------------------------------------- 242 (722)
Q Consensus 224 ---------------~l~~L~~L~l~~N~l~~~~---------------------------------------------- 242 (722)
.+++|+.|++++|.+....
T Consensus 354 l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~ 433 (635)
T 4g8a_A 354 LTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK 433 (635)
T ss_dssp EEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEE
T ss_pred cccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccc
Confidence 1223333444443331100
Q ss_pred ---cchhccCCCCCcEEEccCCCCccCCCC-CCCCCCccEEEccCCCCCccCCCcccc--CCcCEEEccCCcCcccCCcc
Q 004953 243 ---IPASYSNMSKLLKLSLRNCSLQGPMPD-LSRIPNLGYLDLSSNQLNGSIPPGRLS--LNITTIKLSNNKLTGTIPSN 316 (722)
Q Consensus 243 ---~~~~~~~l~~L~~L~L~~N~l~~~~~~-l~~l~~L~~L~Ls~N~l~~~ip~~~~~--~~L~~L~L~~N~l~~~~~~~ 316 (722)
.+..+..+++++.++++.|.+.+..+. +..+++|+.|++++|.+...+++..+. ++|++|+|++|+|++.+|..
T Consensus 434 ~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~ 513 (635)
T 4g8a_A 434 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 513 (635)
T ss_dssp STTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred ccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHH
Confidence 001122334444445555555544443 556677888888887754333322233 58999999999999999999
Q ss_pred CCCCCCCCEEeCCCCcCcccCChhhhhhccCCCCcccEEEccCCcCCCCCCC-C-CC-CCceEEEccCCcCcCCCC
Q 004953 317 FSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGS-F-NI-PPNVTVRLRGNPFCLNTN 389 (722)
Q Consensus 317 ~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~ls~N~l~~~~~~-~-~~-~~l~~l~l~~N~l~~~~~ 389 (722)
|.++++|++|+|++|+|++..|..+.. +++|++||+++|+|+++++. + .+ ++|+.|++++|||.|+|.
T Consensus 514 f~~l~~L~~L~Ls~N~l~~l~~~~~~~-----l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 514 FNSLSSLQVLNMSHNNFFSLDTFPYKC-----LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp TTTCTTCCEEECTTSCCCBCCCGGGTT-----CTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred HcCCCCCCEEECCCCcCCCCChhHHhC-----CCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 999999999999999999877777654 47899999999999998764 4 44 689999999999999986
No 20
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=5.9e-32 Score=322.84 Aligned_cols=159 Identities=19% Similarity=0.195 Sum_probs=102.9
Q ss_pred ccceeEEEcCCCCCccccCccccCCCCCCEEECCCCCCccCC-CccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEE
Q 004953 81 YLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSI-PKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRI 159 (722)
Q Consensus 81 ~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 159 (722)
+++++.|+|++|.+++..+..|.++++|++|+|++|.+.+.+ |..|.++++|++|+|++|.+++..|+.|.++++|++|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 356777777777777766677777777777777777544444 5667777777777777777776667777777777777
Q ss_pred EcccCCCCCCCchh--hcCcCCCCEEECCCccccCCCC-cCCCCCCccceeecccCCCCCCCCccCCCC--CCCcEEECc
Q 004953 160 QIDQNYISGSLPKS--FANLNKTRHFHMNNNSISGQIP-PELSRLPSLVHMLLDNNNLTGYLPPELSEL--PKLLILQLD 234 (722)
Q Consensus 160 ~L~~N~l~~~~p~~--~~~l~~L~~L~L~~N~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l--~~L~~L~l~ 234 (722)
+|++|.+++..|.. |.++++|++|+|++|.+++..+ ..|.++++|++|++++|.+++..+..+..+ ++|+.|+++
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~ 182 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence 77777776655443 6677777777777777765543 456667777777777776665555554443 444444444
Q ss_pred CCCCC
Q 004953 235 NNNFE 239 (722)
Q Consensus 235 ~N~l~ 239 (722)
+|.++
T Consensus 183 ~n~l~ 187 (844)
T 3j0a_A 183 ANSLY 187 (844)
T ss_dssp CSBSC
T ss_pred CCccc
Confidence 44443
No 21
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.6e-32 Score=325.96 Aligned_cols=298 Identities=24% Similarity=0.252 Sum_probs=241.9
Q ss_pred CCccceeEEEcCCCCCcccc-CccccCCCCCCEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCcc--CCCCCC
Q 004953 79 DGYLHLRELQLLNLNLSGNL-SPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEE--LGYLPK 155 (722)
Q Consensus 79 ~~~~~l~~L~L~~~~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~--~~~l~~ 155 (722)
..+.+|+.|++++|...+.+ |..|.++++|++|+|++|.+++..|..|.++++|++|+|++|.+++.+|.. +.++++
T Consensus 45 ~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~ 124 (844)
T 3j0a_A 45 PFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA 124 (844)
T ss_dssp SSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSS
T ss_pred cccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCC
Confidence 45778999999999776666 778999999999999999999999999999999999999999999877665 899999
Q ss_pred CcEEEcccCCCCCCCc-hhhcCcCCCCEEECCCccccCCCCcCCCCC--CccceeecccCCCCCCCCccCCCCCC-----
Q 004953 156 LDRIQIDQNYISGSLP-KSFANLNKTRHFHMNNNSISGQIPPELSRL--PSLVHMLLDNNNLTGYLPPELSELPK----- 227 (722)
Q Consensus 156 L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l--~~L~~L~L~~N~l~~~~~~~l~~l~~----- 227 (722)
|++|+|++|.+++..+ ..|.++++|++|++++|.+++..+..+..+ ++|++|+++.|.+.+..+..+..+++
T Consensus 125 L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~ 204 (844)
T 3j0a_A 125 LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNM 204 (844)
T ss_dssp CCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTC
T ss_pred CCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccC
Confidence 9999999999987755 689999999999999999999888888877 89999999999999988888777766
Q ss_pred -CcEEECcCCCCCCCCcchhccC--------------------------------------CCCCcEEEccCCCCccCCC
Q 004953 228 -LLILQLDNNNFEGTTIPASYSN--------------------------------------MSKLLKLSLRNCSLQGPMP 268 (722)
Q Consensus 228 -L~~L~l~~N~l~~~~~~~~~~~--------------------------------------l~~L~~L~L~~N~l~~~~~ 268 (722)
|+.|++++|.+++ ..+..+.. .++|+.|++++|.+.+..+
T Consensus 205 ~L~~L~Ls~n~l~~-~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~ 283 (844)
T 3j0a_A 205 VLEILDVSGNGWTV-DITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS 283 (844)
T ss_dssp CBSEEBCSSCCSST-TTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECS
T ss_pred ceeEEecCCCcCch-hHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccCh
Confidence 9999999998875 34433321 2568888888888877655
Q ss_pred C-CCCCCCccEEEccCCCCCccCCCccc-cCCcCEEEccCCcCcccCCccCCCCCCCCEEeCCCCcCcccCChhhhhhcc
Q 004953 269 D-LSRIPNLGYLDLSSNQLNGSIPPGRL-SLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRT 346 (722)
Q Consensus 269 ~-l~~l~~L~~L~Ls~N~l~~~ip~~~~-~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~ 346 (722)
. +..+++|+.|+|++|++++..|.... .++|++|+|++|++++..|..|..+++|+.|++++|++++..+..+..
T Consensus 284 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~--- 360 (844)
T 3j0a_A 284 RVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKF--- 360 (844)
T ss_dssp CCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCS---
T ss_pred hhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcC---
Confidence 3 67788888888888888755454322 257888888888888777888888888888888888887555544432
Q ss_pred CCCCcccEEEccCCcCCCCCCCCCCCCceEEEccCCcCc
Q 004953 347 LNATETFILDFQNNNLTNISGSFNIPPNVTVRLRGNPFC 385 (722)
Q Consensus 347 l~~~~L~~L~ls~N~l~~~~~~~~~~~l~~l~l~~N~l~ 385 (722)
+++|+.|++++|.+++++. +++++.|++++|++.
T Consensus 361 --l~~L~~L~Ls~N~l~~i~~---~~~L~~L~l~~N~l~ 394 (844)
T 3j0a_A 361 --LEKLQTLDLRDNALTTIHF---IPSIPDIFLSGNKLV 394 (844)
T ss_dssp --CCCCCEEEEETCCSCCCSS---CCSCSEEEEESCCCC
T ss_pred --CCCCCEEECCCCCCCcccC---CCCcchhccCCCCcc
Confidence 4678888888888877654 567778888888776
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.8e-32 Score=304.38 Aligned_cols=349 Identities=19% Similarity=0.218 Sum_probs=265.7
Q ss_pred eeEEEcCCCCCccccCccccCCCCCCEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCC-CccCCCCCCCcEEEcc
Q 004953 84 LRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSL-PEELGYLPKLDRIQID 162 (722)
Q Consensus 84 l~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~ 162 (722)
-+.++.++++++. +|. +. ++|++|+|++|.+++..|..|.++++|++|+|++|.+.+.+ +..|.++++|++|+|+
T Consensus 12 ~~~~~c~~~~l~~-lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 12 GYNAICINRGLHQ-VPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TTEEECCSSCCSS-CCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred ccccCcCCCCccc-CCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 3568888888874 444 32 78999999999999988999999999999999999997554 6779999999999999
Q ss_pred cCCCCCCCchhhcCcCCCCEEECCCccccCCCCcC--CCCCCccceeecccCCCCCCCCcc-CCCCCCCcEEECcCCCCC
Q 004953 163 QNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPE--LSRLPSLVHMLLDNNNLTGYLPPE-LSELPKLLILQLDNNNFE 239 (722)
Q Consensus 163 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~--l~~l~~L~~L~L~~N~l~~~~~~~-l~~l~~L~~L~l~~N~l~ 239 (722)
+|++++..|..|.++++|++|++++|.+++..+.. +..+++|++|++++|++++..|.. +..+++|++|++++|.++
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 99999989999999999999999999998755444 899999999999999999887876 889999999999999998
Q ss_pred CCCcchhccCC--CCCcEEEccCCCCccCCCC---------CCCCCCccEEEccCCCCCccCCCcc--------------
Q 004953 240 GTTIPASYSNM--SKLLKLSLRNCSLQGPMPD---------LSRIPNLGYLDLSSNQLNGSIPPGR-------------- 294 (722)
Q Consensus 240 ~~~~~~~~~~l--~~L~~L~L~~N~l~~~~~~---------l~~l~~L~~L~Ls~N~l~~~ip~~~-------------- 294 (722)
+ ..+..+..+ .+|+.|++++|.+.+..+. +..+++|++|++++|++++.+|...
T Consensus 168 ~-~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 168 S-ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246 (455)
T ss_dssp C-CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred c-cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence 7 467777665 6788888888888764432 2355678888888887765333211
Q ss_pred --------------------------ccCCcCEEEccCCcCcccCCccCCCCCCCCEEeCCCCcCcccCChhhhhhccCC
Q 004953 295 --------------------------LSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLN 348 (722)
Q Consensus 295 --------------------------~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~l~ 348 (722)
..++|+.|++++|.+++.+|..|..+++|++|++++|++++..|..+..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~----- 321 (455)
T 3v47_A 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG----- 321 (455)
T ss_dssp TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT-----
T ss_pred ccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcC-----
Confidence 0147899999999999888888999999999999999998877777764
Q ss_pred CCcccEEEccCCcCCCCCC-CC-CCCCceEEEccCCcCcCCCCcccccCCCCCCCCcccCCCCCCCCCCCCCCCCCCccC
Q 004953 349 ATETFILDFQNNNLTNISG-SF-NIPPNVTVRLRGNPFCLNTNAEQFCGSHSDDDNEIDRSTNSTLDCRAQSCPTDYEYS 426 (722)
Q Consensus 349 ~~~L~~L~ls~N~l~~~~~-~~-~~~~l~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (722)
+++|+.|++++|+++++++ .+ .+++|++|++++|.+.+..+ ..+.... .+...++..+.....
T Consensus 322 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~--~L~~L~L~~N~l~~~------------ 386 (455)
T 3v47_A 322 LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGD-QSFLGLP--NLKELALDTNQLKSV------------ 386 (455)
T ss_dssp CTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECT-TTTTTCT--TCCEEECCSSCCSCC------------
T ss_pred cccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccCh-hhccccc--cccEEECCCCccccC------------
Confidence 3678899999999988754 33 68889999999998865422 1111111 122233333322110
Q ss_pred CCCCCcccccccceEEEEeeCCCCcCCCchhHHH
Q 004953 427 PTSPIRCFCAAPLLVGYRLKSPGLSYFPAYKNLF 460 (722)
Q Consensus 427 ~~~~~~~~~~~~~~~~l~l~~n~~~~~~p~~~~~ 460 (722)
+ .......+.+..+++++|.+++..|.-..+
T Consensus 387 ~---~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l 417 (455)
T 3v47_A 387 P---DGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 417 (455)
T ss_dssp C---TTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred C---HhHhccCCcccEEEccCCCcccCCCcchHH
Confidence 0 001122345778889999999888854333
No 23
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=8.5e-32 Score=300.98 Aligned_cols=294 Identities=19% Similarity=0.210 Sum_probs=263.5
Q ss_pred eeEEEcCCCCCccccCccccCCCCCCEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEEccc
Q 004953 84 LRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQ 163 (722)
Q Consensus 84 l~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 163 (722)
-+.++.++++++ .+|..+. +++++|+|++|.+++..|..|.++++|++|+|++|.+++..|..|.++++|++|+|++
T Consensus 13 ~~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 13 DRAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TTEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 357888888887 4565554 6899999999999998899999999999999999999988899999999999999999
Q ss_pred CCCCCCCchhhcCcCCCCEEECCCccccCCCCcCCCCCCccceeecccCCCCCCCCccCCCCCCCcEEECcCCCCCCCCc
Q 004953 164 NYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTI 243 (722)
Q Consensus 164 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 243 (722)
|++++..+..|.++++|++|+|++|.+++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|.+++ ..
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~ 168 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS-IP 168 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS-CC
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc-cC
Confidence 99998777889999999999999999999999999999999999999999999999999999999999999999986 35
Q ss_pred chhccCCCCCcEEEccCCCCccCCC-CCCCCCCccEEEccCCCCCccCCCcccc-CCcCEEEccCCcCcccCCccCCCCC
Q 004953 244 PASYSNMSKLLKLSLRNCSLQGPMP-DLSRIPNLGYLDLSSNQLNGSIPPGRLS-LNITTIKLSNNKLTGTIPSNFSGLP 321 (722)
Q Consensus 244 ~~~~~~l~~L~~L~L~~N~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~ip~~~~~-~~L~~L~L~~N~l~~~~~~~~~~l~ 321 (722)
+..+..+++|+.|++++|.+.+..+ .+..+++|+.|++++|.+.+.+|...+. .+|++|++++|++++..+..|..++
T Consensus 169 ~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 248 (477)
T 2id5_A 169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV 248 (477)
T ss_dssp HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCT
T ss_pred hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcc
Confidence 5679999999999999999998766 5889999999999999988888876444 5999999999999977667899999
Q ss_pred CCCEEeCCCCcCcccCChhhhhhccCCCCcccEEEccCCcCCCCCC-CC-CCCCceEEEccCCcCcC
Q 004953 322 RLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISG-SF-NIPPNVTVRLRGNPFCL 386 (722)
Q Consensus 322 ~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~ls~N~l~~~~~-~~-~~~~l~~l~l~~N~l~~ 386 (722)
+|+.|+|++|++++..+..+.. +++|+.|++++|+++++.+ .+ .+++|+.|++++|.++.
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 310 (477)
T 2id5_A 249 YLRFLNLSYNPISTIEGSMLHE-----LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTT 310 (477)
T ss_dssp TCCEEECCSSCCCEECTTSCTT-----CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSC
T ss_pred ccCeeECCCCcCCccChhhccc-----cccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCce
Confidence 9999999999999766666644 4789999999999999754 44 78999999999998864
No 24
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.8e-32 Score=308.59 Aligned_cols=135 Identities=16% Similarity=0.083 Sum_probs=104.2
Q ss_pred cCCCCCcEEEccCCCCccCC---CCCCCCCCccEEEccCCCCCccCCCccccCCcCEEEccCCcCcccCC-ccCCCCCCC
Q 004953 248 SNMSKLLKLSLRNCSLQGPM---PDLSRIPNLGYLDLSSNQLNGSIPPGRLSLNITTIKLSNNKLTGTIP-SNFSGLPRL 323 (722)
Q Consensus 248 ~~l~~L~~L~L~~N~l~~~~---~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~L~~L~L~~N~l~~~~~-~~~~~l~~L 323 (722)
..+++|+.|++++|++++.. ..+..+++|++|++++|.+++..+.....++|++|++++|.+++..+ ..+..+++|
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 423 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTC
T ss_pred ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCC
Confidence 45678888999999888653 24677889999999999888433332223689999999999887766 568888999
Q ss_pred CEEeCCCCcCcccCChhhhhhccCCCCcccEEEccCCcCCC--CCCCC-CCCCceEEEccCCcCcCC
Q 004953 324 QRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTN--ISGSF-NIPPNVTVRLRGNPFCLN 387 (722)
Q Consensus 324 ~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~ls~N~l~~--~~~~~-~~~~l~~l~l~~N~l~~~ 387 (722)
++|++++|++++..|..+.. +++|+.|++++|.+++ ++..+ .+++|+.|++++|++++.
T Consensus 424 ~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~ 485 (570)
T 2z63_A 424 IYLDISHTHTRVAFNGIFNG-----LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485 (570)
T ss_dssp CEEECTTSCCEECCTTTTTT-----CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred CEEeCcCCcccccchhhhhc-----CCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccC
Confidence 99999999998877777654 3678899999998873 55555 788899999999888654
No 25
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=8.7e-32 Score=307.68 Aligned_cols=161 Identities=20% Similarity=0.257 Sum_probs=92.1
Q ss_pred CCCCCcEEECcCCCCCCCC-cchhccCCCCCcEEEccCCC-----------------------CccCCC--CCCCCCCcc
Q 004953 224 ELPKLLILQLDNNNFEGTT-IPASYSNMSKLLKLSLRNCS-----------------------LQGPMP--DLSRIPNLG 277 (722)
Q Consensus 224 ~l~~L~~L~l~~N~l~~~~-~~~~~~~l~~L~~L~L~~N~-----------------------l~~~~~--~l~~l~~L~ 277 (722)
.+++|+.|++++|.+++.. .+..+..+++|++|++++|. +++..+ .+..+++|+
T Consensus 345 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 424 (570)
T 2z63_A 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424 (570)
T ss_dssp BCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCC
T ss_pred cCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCC
Confidence 4566777777777765310 13444455555555555554 444333 245555666
Q ss_pred EEEccCCCCCccCCCccc-cCCcCEEEccCCcCc-ccCCccCCCCCCCCEEeCCCCcCcccCChhhhhhccCCCCcccEE
Q 004953 278 YLDLSSNQLNGSIPPGRL-SLNITTIKLSNNKLT-GTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFIL 355 (722)
Q Consensus 278 ~L~Ls~N~l~~~ip~~~~-~~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L 355 (722)
+|++++|.+++..|.... .++|++|++++|.++ +.+|..|..+++|++|++++|++++..|..+.. +++|+.|
T Consensus 425 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L 499 (570)
T 2z63_A 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS-----LSSLQVL 499 (570)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT-----CTTCCEE
T ss_pred EEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhc-----ccCCCEE
Confidence 666666665544443311 246666666666665 455666666666666666666666555655543 2556667
Q ss_pred EccCCcCCCCCCC-C-CCCCceEEEccCCcCcCCCC
Q 004953 356 DFQNNNLTNISGS-F-NIPPNVTVRLRGNPFCLNTN 389 (722)
Q Consensus 356 ~ls~N~l~~~~~~-~-~~~~l~~l~l~~N~l~~~~~ 389 (722)
++++|+++++++. + .+++++.|++++|+|+|.|+
T Consensus 500 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 500 NMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred eCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 7777766666543 3 56666677777777766654
No 26
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.98 E-value=1.5e-31 Score=304.26 Aligned_cols=295 Identities=20% Similarity=0.266 Sum_probs=180.9
Q ss_pred CccceeEEEcCCCCCccccCccccCCCCCCEEECCCCCCccCCCccccCCCCCCEEeccCCcCCC-CCCccCCCCCCCcE
Q 004953 80 GYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTG-SLPEELGYLPKLDR 158 (722)
Q Consensus 80 ~~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~ 158 (722)
.++++++|++++|.+++..|..|.++++|++|+|++|.+++..|..|+++++|++|++++|.+++ ..|..++++++|++
T Consensus 48 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 127 (549)
T 2z81_A 48 ACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT 127 (549)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCE
T ss_pred cCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccE
Confidence 34567777777777776666667777777777777777776655556777777777777777664 24455666666666
Q ss_pred EEcccCCCCCCC-chhhcCcCCCCEEECCCccccCCCCcCCCC-------------------------------------
Q 004953 159 IQIDQNYISGSL-PKSFANLNKTRHFHMNNNSISGQIPPELSR------------------------------------- 200 (722)
Q Consensus 159 L~L~~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~------------------------------------- 200 (722)
|++++|.+.+.+ +..|.++++|++|++++|.+++..|..+..
T Consensus 128 L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 207 (549)
T 2z81_A 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN 207 (549)
T ss_dssp EEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCB
T ss_pred EECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCc
Confidence 666666532222 234555555555555555554444433322
Q ss_pred --------------------------------------------------------------------------------
Q 004953 201 -------------------------------------------------------------------------------- 200 (722)
Q Consensus 201 -------------------------------------------------------------------------------- 200 (722)
T Consensus 208 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 287 (549)
T 2z81_A 208 LARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVT 287 (549)
T ss_dssp CTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEE
T ss_pred cccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccccccc
Confidence
Q ss_pred ---------------------------------------------CCccceeecccCCCCCCCC---ccCCCCCCCcEEE
Q 004953 201 ---------------------------------------------LPSLVHMLLDNNNLTGYLP---PELSELPKLLILQ 232 (722)
Q Consensus 201 ---------------------------------------------l~~L~~L~L~~N~l~~~~~---~~l~~l~~L~~L~ 232 (722)
+++|++|++++|++++..| ..++.+++|+.|+
T Consensus 288 l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~ 367 (549)
T 2z81_A 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLV 367 (549)
T ss_dssp EESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEE
T ss_pred ccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEE
Confidence 2333333333333333221 1233444444444
Q ss_pred CcCCCCCCCCcc---hhccCCCCCcEEEccCCCCccCCCCCCCCCCccEEEccCCCCCccCCCccccCCcCEEEccCCcC
Q 004953 233 LDNNNFEGTTIP---ASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLDLSSNQLNGSIPPGRLSLNITTIKLSNNKL 309 (722)
Q Consensus 233 l~~N~l~~~~~~---~~~~~l~~L~~L~L~~N~l~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~L~~L~L~~N~l 309 (722)
+++|++++ ++ ..+..+++|++|++++|+++..+..+..+++|++|++++|+++ .+|.. ..++|++|++++|++
T Consensus 368 Ls~N~l~~--~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~-~~~~L~~L~Ls~N~l 443 (549)
T 2z81_A 368 LSQNHLRS--MQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIR-VVKTC-IPQTLEVLDVSNNNL 443 (549)
T ss_dssp CTTSCCCC--HHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCS-CCCTT-SCTTCSEEECCSSCC
T ss_pred ccCCcccc--cccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcc-cccch-hcCCceEEECCCCCh
Confidence 44444442 21 2355555666666666666544334555666666666666665 44433 235677777777777
Q ss_pred cccCCccCCCCCCCCEEeCCCCcCcccCChhhhhhccCCCCcccEEEccCCcCCCCCCC-C-CCCCceEEEccCCcCcCC
Q 004953 310 TGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGS-F-NIPPNVTVRLRGNPFCLN 387 (722)
Q Consensus 310 ~~~~~~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~ls~N~l~~~~~~-~-~~~~l~~l~l~~N~l~~~ 387 (722)
++.+ ..+++|++|+|++|+++ .+|.. . ..++|+.|++++|+++++++. + .+++++.|++++|+|.|+
T Consensus 444 ~~~~----~~l~~L~~L~Ls~N~l~-~ip~~-~-----~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 512 (549)
T 2z81_A 444 DSFS----LFLPRLQELYISRNKLK-TLPDA-S-----LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 512 (549)
T ss_dssp SCCC----CCCTTCCEEECCSSCCS-SCCCG-G-----GCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCC
T ss_pred hhhc----ccCChhcEEECCCCccC-cCCCc-c-----cCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCC
Confidence 6542 47888999999999998 77763 2 247889999999999998765 4 788899999999999988
Q ss_pred CC
Q 004953 388 TN 389 (722)
Q Consensus 388 ~~ 389 (722)
|+
T Consensus 513 ~~ 514 (549)
T 2z81_A 513 CP 514 (549)
T ss_dssp HH
T ss_pred Cc
Confidence 85
No 27
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.98 E-value=7.1e-33 Score=291.91 Aligned_cols=248 Identities=26% Similarity=0.472 Sum_probs=215.8
Q ss_pred CCCCEEECCCCCCcc--CCCccccCCCCCCEEeccC-CcCCCCCCccCCCCCCCcEEEcccCCCCCCCchhhcCcCCCCE
Q 004953 106 SYLTILDFMWNKISG--SIPKEIGNIKSLELLLLNG-NELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRH 182 (722)
Q Consensus 106 ~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 182 (722)
.+++.|+|++|.+++ .+|..|.++++|++|+|++ |.+.+.+|..|+++++|++|+|++|++++.+|..|.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 579999999999999 8999999999999999995 9999999999999999999999999999999999999999999
Q ss_pred EECCCccccCCCCcCCCCCCccceeecccCCCCCCCCccCCCCC-CCcEEECcCCCCCCCCcchhccCCCCCcEEEccCC
Q 004953 183 FHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELP-KLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNC 261 (722)
Q Consensus 183 L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~-~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~L~~N 261 (722)
|++++|.+++.+|..+..+++|++|++++|++++.+|..+..++ +|+.|++++|.+++ .+|..+..++ |+.|++++|
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~-~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG-KIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEE-ECCGGGGGCC-CSEEECCSS
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeec-cCChHHhCCc-ccEEECcCC
Confidence 99999999999999999999999999999999999999999998 99999999999987 5888888887 999999999
Q ss_pred CCccCCCC-CCCCCCccEEEccCCCCCccCCCccccCCcCEEEccCCcCcccCCccCCCCCCCCEEeCCCCcCcccCChh
Q 004953 262 SLQGPMPD-LSRIPNLGYLDLSSNQLNGSIPPGRLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSS 340 (722)
Q Consensus 262 ~l~~~~~~-l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ip~~ 340 (722)
++++..+. +..+++|+.|++++|++++.+|.....++|++|+|++|++++.+|..|..+++|++|+|++|+++|.+|..
T Consensus 208 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred cccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 99887664 78888999999999988876666444467888888888888888888888888888888888888777764
Q ss_pred hhhhccCCCCcccEEEccCCc
Q 004953 341 IWQSRTLNATETFILDFQNNN 361 (722)
Q Consensus 341 ~~~~~~l~~~~L~~L~ls~N~ 361 (722)
.. +++|+.+++++|.
T Consensus 288 -~~-----l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 288 -GN-----LQRFDVSAYANNK 302 (313)
T ss_dssp -TT-----GGGSCGGGTCSSS
T ss_pred -cc-----ccccChHHhcCCC
Confidence 22 2445555555554
No 28
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.98 E-value=1.7e-31 Score=301.98 Aligned_cols=291 Identities=19% Similarity=0.195 Sum_probs=217.5
Q ss_pred cceeEEEcCCCCCccccCccccCCCCCCEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEEc
Q 004953 82 LHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQI 161 (722)
Q Consensus 82 ~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 161 (722)
++++.|++++|.+++..|..|.++++|++|+|++|++++..|..|.++++|++|+|++|+++ .+|.. .+++|++|+|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence 68999999999999888889999999999999999999888999999999999999999999 56665 8999999999
Q ss_pred ccCCCCC-CCchhhcCcCCCCEEECCCccccCCCCcCCCCCCcc--ceeecccCCC--CCCCCccCCC------------
Q 004953 162 DQNYISG-SLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSL--VHMLLDNNNL--TGYLPPELSE------------ 224 (722)
Q Consensus 162 ~~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L--~~L~L~~N~l--~~~~~~~l~~------------ 224 (722)
++|.+++ .+|..|+++++|++|++++|.+++ ..+..+++| ++|++++|.+ .+..|..+..
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 174 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCS
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEecc
Confidence 9999997 478999999999999999999986 457777788 9999999999 6666766655
Q ss_pred --------------CCCCcEEECcCCC-------CCCCCcchhccC---------------------------CCCCcEE
Q 004953 225 --------------LPKLLILQLDNNN-------FEGTTIPASYSN---------------------------MSKLLKL 256 (722)
Q Consensus 225 --------------l~~L~~L~l~~N~-------l~~~~~~~~~~~---------------------------l~~L~~L 256 (722)
+++|+.|++++|. +.+ .++ .+.. .++|++|
T Consensus 175 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L 252 (520)
T 2z7x_B 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLS-ILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF 252 (520)
T ss_dssp SSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHH-HHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEE
T ss_pred Ccchhhhhhhhhhcccceeeccccccccccccceeec-chh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEE
Confidence 3344444444443 111 000 1111 2356666
Q ss_pred EccCCCCccCCCC-C-----CCCCCccEEEccCCCCCccCCC---------------------------ccccCCcCEEE
Q 004953 257 SLRNCSLQGPMPD-L-----SRIPNLGYLDLSSNQLNGSIPP---------------------------GRLSLNITTIK 303 (722)
Q Consensus 257 ~L~~N~l~~~~~~-l-----~~l~~L~~L~Ls~N~l~~~ip~---------------------------~~~~~~L~~L~ 303 (722)
++++|++++..|. + ..+++|+.+++++|.+ .+|. ....++|++|+
T Consensus 253 ~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ 330 (520)
T 2z7x_B 253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLD 330 (520)
T ss_dssp EEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEE
T ss_pred EeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEE
Confidence 6666666654443 3 5555555555555554 2331 01335788888
Q ss_pred ccCCcCcccCCccCCCCCCCCEEeCCCCcCcc--cCChhhhhhccCCCCcccEEEccCCcCCC-CCCC-C-CCCCceEEE
Q 004953 304 LSNNKLTGTIPSNFSGLPRLQRLFIANNSLSG--SIPSSIWQSRTLNATETFILDFQNNNLTN-ISGS-F-NIPPNVTVR 378 (722)
Q Consensus 304 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~ip~~~~~~~~l~~~~L~~L~ls~N~l~~-~~~~-~-~~~~l~~l~ 378 (722)
+++|++++.+|..+..+++|++|++++|++++ .+|..+.. +++|+.|++++|++++ ++.. + .++++++|+
T Consensus 331 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~-----l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~ 405 (520)
T 2z7x_B 331 FSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ-----MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLN 405 (520)
T ss_dssp CCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTT-----CTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEE
T ss_pred eECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhh-----CCCCCEEECCCCcCCcccccchhccCccCCEEE
Confidence 88888888778888888888888888888875 45555543 3678888888888887 6644 3 677888888
Q ss_pred ccCCcCcCC
Q 004953 379 LRGNPFCLN 387 (722)
Q Consensus 379 l~~N~l~~~ 387 (722)
+++|++++.
T Consensus 406 Ls~N~l~~~ 414 (520)
T 2z7x_B 406 MSSNILTDT 414 (520)
T ss_dssp CCSSCCCGG
T ss_pred CcCCCCCcc
Confidence 888887654
No 29
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.98 E-value=5.2e-31 Score=307.86 Aligned_cols=301 Identities=21% Similarity=0.291 Sum_probs=160.4
Q ss_pred eeEEEcCCCCCccccCccccCCCCCCEEECCCCCCccCCCccccC---------------------------------CC
Q 004953 84 LRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGN---------------------------------IK 130 (722)
Q Consensus 84 l~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~---------------------------------l~ 130 (722)
++.|++++|.+++..+..|+.+++|++|++++|.+++..|..|.+ ++
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~ 329 (680)
T 1ziw_A 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK 329 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCT
T ss_pred CCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCC
Confidence 666666666666666666666666666666666666555544444 44
Q ss_pred CCCEEeccCCcCCCCCCccCCCCCCCcEEEcccCC----------------------------CCCCCchhhcCcCCCCE
Q 004953 131 SLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNY----------------------------ISGSLPKSFANLNKTRH 182 (722)
Q Consensus 131 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~----------------------------l~~~~p~~~~~l~~L~~ 182 (722)
+|++|++++|.+++..+..|.++++|++|++++|. +++..|..|..+++|++
T Consensus 330 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 409 (680)
T 1ziw_A 330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV 409 (680)
T ss_dssp TCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCE
Confidence 45555555555555445445555544444444332 22223333444444444
Q ss_pred EECCCccccCCCC-cCCCCCCccceeecccCCCCCCCCccCCCCCCCcEEECcCCCCCCC-CcchhccCCCCCcEEEccC
Q 004953 183 FHMNNNSISGQIP-PELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGT-TIPASYSNMSKLLKLSLRN 260 (722)
Q Consensus 183 L~L~~N~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~-~~~~~~~~l~~L~~L~L~~ 260 (722)
|++++|.+++.+| ..|.++++|++|++++|++++..+..+..+++|+.|++++|.+++. ..|..+..+++|+.|++++
T Consensus 410 L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~ 489 (680)
T 1ziw_A 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489 (680)
T ss_dssp EECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCS
T ss_pred EeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCC
Confidence 4444444433222 2344444444444444444444444444444455555554444311 2455566666666666666
Q ss_pred CCCccCCCC-CCCCCCccEEEccCCCCCccC----CCc-----cccCCcCEEEccCCcCcccCCccCCCCCCCCEEeCCC
Q 004953 261 CSLQGPMPD-LSRIPNLGYLDLSSNQLNGSI----PPG-----RLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIAN 330 (722)
Q Consensus 261 N~l~~~~~~-l~~l~~L~~L~Ls~N~l~~~i----p~~-----~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 330 (722)
|++++..+. +..+++|++|++++|++++.. |.. ...++|++|+|++|+++...+..|.++++|+.|+|++
T Consensus 490 N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 569 (680)
T 1ziw_A 490 NNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGL 569 (680)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCC
Confidence 666655443 556666666666666665321 110 1114666666666666654445566666666666666
Q ss_pred CcCcccCChhhhhhccCCCCcccEEEccCCcCCCCCCCC---CCCCceEEEccCCcCcCCCC
Q 004953 331 NSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGSF---NIPPNVTVRLRGNPFCLNTN 389 (722)
Q Consensus 331 N~l~~~ip~~~~~~~~l~~~~L~~L~ls~N~l~~~~~~~---~~~~l~~l~l~~N~l~~~~~ 389 (722)
|++++ +|...+. .+++|+.|++++|+|+++++.. .+++++.+++++|||.|+|+
T Consensus 570 N~l~~-l~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 570 NNLNT-LPASVFN----NQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp SCCCC-CCTTTTT----TCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred CCCCc-CCHhHhC----CCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 66663 3333221 2356666666666666655432 34566666777777766653
No 30
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=3.6e-30 Score=273.42 Aligned_cols=291 Identities=23% Similarity=0.312 Sum_probs=141.3
Q ss_pred CCCCCCCceeecCCCCCC----CCccceeEEEcCCCCCccccCccccCCCCCCEEECCCCCCccCCCccccCCCCCCEEe
Q 004953 61 DPCTSNWTGVLCFNTTMD----DGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLL 136 (722)
Q Consensus 61 ~~C~~~w~gv~C~~~~~~----~~~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 136 (722)
..|.|.|+.+.|.+.... ...++++.|++++|.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|+
T Consensus 27 ~~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 27 FRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp TTCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCCcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 346566777777543211 1123455555555555554444555555555555555555555555555555555555
Q ss_pred ccCCcCCCCCCccCCCCCCCcEEEcccCCCCCCCchhhcCcCCCCEEECCCccccC--CCCcCCCCCCccceeecccCCC
Q 004953 137 LNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISG--QIPPELSRLPSLVHMLLDNNNL 214 (722)
Q Consensus 137 L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~~~~~l~~l~~L~~L~L~~N~l 214 (722)
+++|.++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+.. ..+..+..+++|++|++++|++
T Consensus 107 Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 183 (330)
T 1xku_A 107 LSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183 (330)
T ss_dssp CCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred CCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence 5555555 3333332 455555555555555555555555555555555555532 3444455555555555555555
Q ss_pred CCCCCccCCCCCCCcEEECcCCCCCCCCcchhccCCCCCcEEEccCCCCccCCC-CCCCCCCccEEEccCCCCCccCCCc
Q 004953 215 TGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMP-DLSRIPNLGYLDLSSNQLNGSIPPG 293 (722)
Q Consensus 215 ~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~ip~~ 293 (722)
+. +|..+. ++|++|++++|.+++ ..+..+..+++|+.|++++|++++..+ .+..+++
T Consensus 184 ~~-l~~~~~--~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~------------------ 241 (330)
T 1xku_A 184 TT-IPQGLP--PSLTELHLDGNKITK-VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH------------------ 241 (330)
T ss_dssp CS-CCSSCC--TTCSEEECTTSCCCE-ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTT------------------
T ss_pred cc-CCcccc--ccCCEEECCCCcCCc-cCHHHhcCCCCCCEEECCCCcCceeChhhccCCCC------------------
Confidence 42 232222 445555555555543 233444445555555555555544333 2444444
Q ss_pred cccCCcCEEEccCCcCcccCCccCCCCCCCCEEeCCCCcCcccCChhhhhhc-cCCCCcccEEEccCCcCCC--CCC-CC
Q 004953 294 RLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSR-TLNATETFILDFQNNNLTN--ISG-SF 369 (722)
Q Consensus 294 ~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~-~l~~~~L~~L~ls~N~l~~--~~~-~~ 369 (722)
|++|++++|+++ .+|..+..+++|++|++++|++++..+..+.... ......++.|++++|.++. +++ .+
T Consensus 242 -----L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f 315 (330)
T 1xku_A 242 -----LRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF 315 (330)
T ss_dssp -----CCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGG
T ss_pred -----CCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcccc
Confidence 555555555554 3444455555555555555555533333332110 0112345555666665543 222 22
Q ss_pred -CCCCceEEEccCC
Q 004953 370 -NIPPNVTVRLRGN 382 (722)
Q Consensus 370 -~~~~l~~l~l~~N 382 (722)
...+++.+++++|
T Consensus 316 ~~~~~l~~l~L~~N 329 (330)
T 1xku_A 316 RCVYVRAAVQLGNY 329 (330)
T ss_dssp TTCCCGGGEEC---
T ss_pred ccccceeEEEeccc
Confidence 4555566666655
No 31
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=3.8e-30 Score=273.50 Aligned_cols=269 Identities=20% Similarity=0.295 Sum_probs=135.1
Q ss_pred CCCCEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEEcccCCCCCCCchhhcCcCCCCEEEC
Q 004953 106 SYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHM 185 (722)
Q Consensus 106 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 185 (722)
++|++|++++|.+++..|..|.++++|++|+|++|.+++..|..|.++++|++|++++|+++ .+|..+. ++|++|++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l 130 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRI 130 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEEC
Confidence 34555555555555444445555555555555555555444555555555555555555554 2232222 45555555
Q ss_pred CCccccCCCCcCCCCCCccceeecccCCCCC--CCCccCCCCCCCcEEECcCCCCCCCCcchhccCCCCCcEEEccCCCC
Q 004953 186 NNNSISGQIPPELSRLPSLVHMLLDNNNLTG--YLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSL 263 (722)
Q Consensus 186 ~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~--~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 263 (722)
++|.++...+..|..+++|++|++++|.++. ..+..+..+ +|+.|++++|.+++ +|..+. ++|++|++++|++
T Consensus 131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~--l~~~~~--~~L~~L~l~~n~i 205 (332)
T 2ft3_A 131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG--IPKDLP--ETLNELHLDHNKI 205 (332)
T ss_dssp CSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS--CCSSSC--SSCSCCBCCSSCC
T ss_pred CCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc--cCcccc--CCCCEEECCCCcC
Confidence 5555554444445555555555555555532 344444444 55555555555553 333322 4555555555555
Q ss_pred ccCCC-CCCCCCCccEEEccCCCCCccCCCcc-ccCCcCEEEccCCcCcccCCccCCCCCCCCEEeCCCCcCcccCChhh
Q 004953 264 QGPMP-DLSRIPNLGYLDLSSNQLNGSIPPGR-LSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSI 341 (722)
Q Consensus 264 ~~~~~-~l~~l~~L~~L~Ls~N~l~~~ip~~~-~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ip~~~ 341 (722)
++..+ .+..+++|++|++++|++++..+... ..++|++|++++|+++ .+|..+..+++|+.|++++|++++..+..+
T Consensus 206 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~ 284 (332)
T 2ft3_A 206 QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDF 284 (332)
T ss_dssp CCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSS
T ss_pred CccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHc
Confidence 55443 35555556666666665553332221 1245666666666665 445556666666666666666664433333
Q ss_pred hhhc-cCCCCcccEEEccCCcCC--CCCCC-C-CCCCceEEEccCCc
Q 004953 342 WQSR-TLNATETFILDFQNNNLT--NISGS-F-NIPPNVTVRLRGNP 383 (722)
Q Consensus 342 ~~~~-~l~~~~L~~L~ls~N~l~--~~~~~-~-~~~~l~~l~l~~N~ 383 (722)
.... ......++.|++++|.++ ++.+. + .+++++.+++++|+
T Consensus 285 ~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 285 CPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 3211 011244566666666665 33322 2 45666666666653
No 32
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=1.9e-31 Score=282.74 Aligned_cols=286 Identities=21% Similarity=0.249 Sum_probs=150.1
Q ss_pred CCCHHHHHHHHHHHHhcC-CCCCCCCCCC---CCCCCCCCCceeecCCCCC---CCCccceeEEEcCCCCCccccCcccc
Q 004953 31 ITDPIEVSALRSIKKSLV-DDYSKLSNWN---RGDPCTSNWTGVLCFNTTM---DDGYLHLRELQLLNLNLSGNLSPEIG 103 (722)
Q Consensus 31 ~~~~~~~~~l~~~k~~l~-~~~~~l~~w~---~~~~C~~~w~gv~C~~~~~---~~~~~~l~~L~L~~~~l~~~~~~~~~ 103 (722)
..-.+|++||++||+.+. ++.+.+..|. ......|.|.|+.|..... .....+++.|+++++.++ .+|+.+.
T Consensus 23 ~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~ 101 (328)
T 4fcg_A 23 TALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAF 101 (328)
T ss_dssp CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGG
T ss_pred ccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhh
Confidence 344578899999999884 5545567783 2222223799999942100 001134555555555554 3444444
Q ss_pred CCCCCCEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEEcccCCCCCCCchhhcCcCCCCEE
Q 004953 104 RLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHF 183 (722)
Q Consensus 104 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 183 (722)
++++|++|+|++|.++ .+|..|+++++|++|+|++|.++ .+|..+.++++|++|++++|++.+.+|..+...
T Consensus 102 ~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~------ 173 (328)
T 4fcg_A 102 RLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST------ 173 (328)
T ss_dssp GGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEE------
T ss_pred hCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhc------
Confidence 4555555555555554 44444555555555555555544 344444444444444444444444444333220
Q ss_pred ECCCccccCCCCcCCCCCCccceeecccCCCCCCCCccCCCCCCCcEEECcCCCCCCCCcchhccCCCCCcEEEccCCCC
Q 004953 184 HMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSL 263 (722)
Q Consensus 184 ~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 263 (722)
..+..+.++++|++|++++|+++ .+|..+..+++|++|++++|.+++ +|..+..+++|++|++++|++
T Consensus 174 ---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~--l~~~l~~l~~L~~L~Ls~n~~ 241 (328)
T 4fcg_A 174 ---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA--LGPAIHHLPKLEELDLRGCTA 241 (328)
T ss_dssp ---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC--CCGGGGGCTTCCEEECTTCTT
T ss_pred ---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc--CchhhccCCCCCEEECcCCcc
Confidence 01112233555666666666555 455555555566666666665553 444555555555555555555
Q ss_pred ccCCCC-CCCCCCccEEEccCCCCCccCCCccccCCcCEEEccCCcCcccCCccCCCCCCCCEEeCCCCcCcccCChhhh
Q 004953 264 QGPMPD-LSRIPNLGYLDLSSNQLNGSIPPGRLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIW 342 (722)
Q Consensus 264 ~~~~~~-l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ip~~~~ 342 (722)
.+..|. +..+++|++|++++| .+.+.+|..+..+++|++|+|++|++.+.+|..++
T Consensus 242 ~~~~p~~~~~l~~L~~L~L~~n-----------------------~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~ 298 (328)
T 4fcg_A 242 LRNYPPIFGGRAPLKRLILKDC-----------------------SNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298 (328)
T ss_dssp CCBCCCCTTCCCCCCEEECTTC-----------------------TTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred hhhhHHHhcCCCCCCEEECCCC-----------------------CchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh
Confidence 544432 444444444444444 44445555556666666666666666666666665
Q ss_pred hhccCCCCcccEEEccCCcCCCC
Q 004953 343 QSRTLNATETFILDFQNNNLTNI 365 (722)
Q Consensus 343 ~~~~l~~~~L~~L~ls~N~l~~~ 365 (722)
.+ ++++.+++..|.+..+
T Consensus 299 ~L-----~~L~~l~l~~~~~~~l 316 (328)
T 4fcg_A 299 QL-----PANCIILVPPHLQAQL 316 (328)
T ss_dssp GS-----CTTCEEECCGGGSCC-
T ss_pred hc-----cCceEEeCCHHHHHHH
Confidence 43 4456666666555543
No 33
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=2.9e-30 Score=294.61 Aligned_cols=289 Identities=17% Similarity=0.195 Sum_probs=219.5
Q ss_pred eeEEEcCCCCCccccCccccCCCCCCEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEEccc
Q 004953 84 LRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQ 163 (722)
Q Consensus 84 l~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 163 (722)
.+.++++++++++ +|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|++++..|+.|.++++|++|+|++
T Consensus 33 ~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 33 ESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 4899999999996 676554 8999999999999988888999999999999999999988899999999999999999
Q ss_pred CCCCCCCchhhcCcCCCCEEECCCccccCC-CCcCCCCCCccceeecccCCCCCCCCccCCCCCCC--cEEECcCCCC--
Q 004953 164 NYISGSLPKSFANLNKTRHFHMNNNSISGQ-IPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKL--LILQLDNNNF-- 238 (722)
Q Consensus 164 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L--~~L~l~~N~l-- 238 (722)
|+++. +|.. .+++|++|++++|.+++. +|..|.++++|++|++++|++++. .+..+++| +.|++++|.+
T Consensus 110 N~l~~-lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~ 183 (562)
T 3a79_B 110 NRLQN-ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHI 183 (562)
T ss_dssp SCCCE-ECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCC
T ss_pred CcCCc-cCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccc
Confidence 99984 5555 899999999999999874 468999999999999999999864 34445555 9999999988
Q ss_pred CCCCcchhccCCC-------------------------------------------------------------------
Q 004953 239 EGTTIPASYSNMS------------------------------------------------------------------- 251 (722)
Q Consensus 239 ~~~~~~~~~~~l~------------------------------------------------------------------- 251 (722)
++ ..|..+..+.
T Consensus 184 ~~-~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~ 262 (562)
T 3a79_B 184 KG-GETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETT 262 (562)
T ss_dssp CS-SSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEEC
T ss_pred cc-cCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCc
Confidence 55 3444444322
Q ss_pred --------------CCcEEEccCCCCccCCCC-C-----CCCC--------------------------CccEEEccCCC
Q 004953 252 --------------KLLKLSLRNCSLQGPMPD-L-----SRIP--------------------------NLGYLDLSSNQ 285 (722)
Q Consensus 252 --------------~L~~L~L~~N~l~~~~~~-l-----~~l~--------------------------~L~~L~Ls~N~ 285 (722)
+|++|++++|++++.+|. + ..++ +|+.|++++|.
T Consensus 263 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~ 342 (562)
T 3a79_B 263 WKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP 342 (562)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSC
T ss_pred HHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCC
Confidence 455555555655554432 2 2222 24444455554
Q ss_pred CCccCCCccccCCcCEEEccCCcCcccCCccCCCCCCCCEEeCCCCcCcc--cCChhhhhhccCCCCcccEEEccCCcCC
Q 004953 286 LNGSIPPGRLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSG--SIPSSIWQSRTLNATETFILDFQNNNLT 363 (722)
Q Consensus 286 l~~~ip~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~ip~~~~~~~~l~~~~L~~L~ls~N~l~ 363 (722)
+. .++.....++|++|++++|++++.+|..+..+++|++|++++|++++ .+|..+.. +++|+.|++++|+++
T Consensus 343 ~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~-----l~~L~~L~l~~N~l~ 416 (562)
T 3a79_B 343 FI-HMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKN-----MSSLETLDVSLNSLN 416 (562)
T ss_dssp CC-CCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTT-----CTTCCEEECTTSCCB
T ss_pred cc-cccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcC-----CCCCCEEECCCCcCC
Confidence 43 11111133578888888888888888888888888888888888885 23334433 467888888888888
Q ss_pred C-CCCC-C-CCCCceEEEccCCcCcCCC
Q 004953 364 N-ISGS-F-NIPPNVTVRLRGNPFCLNT 388 (722)
Q Consensus 364 ~-~~~~-~-~~~~l~~l~l~~N~l~~~~ 388 (722)
+ ++.. + .++++++|++++|++++..
T Consensus 417 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 444 (562)
T 3a79_B 417 SHAYDRTCAWAESILVLNLSSNMLTGSV 444 (562)
T ss_dssp SCCSSCCCCCCTTCCEEECCSSCCCGGG
T ss_pred CccChhhhcCcccCCEEECCCCCCCcch
Confidence 7 6654 3 6788888888888887543
No 34
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=7e-30 Score=294.22 Aligned_cols=362 Identities=17% Similarity=0.129 Sum_probs=267.8
Q ss_pred eEEEcCCCCCccccCccccCCCCCCEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEEcccC
Q 004953 85 RELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQN 164 (722)
Q Consensus 85 ~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N 164 (722)
++++.++++++ .+|..+. ++|++|+|++|.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n 90 (606)
T 3vq2_A 14 ITYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90 (606)
T ss_dssp TEEECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CceEccCCCcc-cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC
Confidence 45677777776 4555554 78999999999999988889999999999999999999888999999999999999999
Q ss_pred CCCCCCchhhcCcCCCCEEECCCccccCCCCcCCCCCCccceeecccCCCCC-CCCccCCCCCCCcEEECcCCCCCCCCc
Q 004953 165 YISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTG-YLPPELSELPKLLILQLDNNNFEGTTI 243 (722)
Q Consensus 165 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~-~~~~~l~~l~~L~~L~l~~N~l~~~~~ 243 (722)
.+++..|..|.++++|++|++++|.+++..+..++++++|++|++++|.+++ .+|..++++++|++|++++|.+++. .
T Consensus 91 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~-~ 169 (606)
T 3vq2_A 91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI-T 169 (606)
T ss_dssp CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE-C
T ss_pred cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec-C
Confidence 9999889999999999999999999998888899999999999999999986 5699999999999999999987642 1
Q ss_pred chhcc---------------------------------------------------------------------------
Q 004953 244 PASYS--------------------------------------------------------------------------- 248 (722)
Q Consensus 244 ~~~~~--------------------------------------------------------------------------- 248 (722)
+..+.
T Consensus 170 ~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~ 249 (606)
T 3vq2_A 170 VNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI 249 (606)
T ss_dssp TTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC
T ss_pred hhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccc
Confidence 11110
Q ss_pred --------------------------------------------------------------------------------
Q 004953 249 -------------------------------------------------------------------------------- 248 (722)
Q Consensus 249 -------------------------------------------------------------------------------- 248 (722)
T Consensus 250 ~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~ 329 (606)
T 3vq2_A 250 FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPF 329 (606)
T ss_dssp CCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCCCCSS
T ss_pred cChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccccCCCCc
Confidence
Q ss_pred ------------------CCCCCcEEEccCCCCccCC--C-CCCCCCCccEEEccCCCCCccCCCcc-ccCCcCEEEccC
Q 004953 249 ------------------NMSKLLKLSLRNCSLQGPM--P-DLSRIPNLGYLDLSSNQLNGSIPPGR-LSLNITTIKLSN 306 (722)
Q Consensus 249 ------------------~l~~L~~L~L~~N~l~~~~--~-~l~~l~~L~~L~Ls~N~l~~~ip~~~-~~~~L~~L~L~~ 306 (722)
.+++|++|++++|++++.. + .+..+++|++|++++|.++ .+|... ..++|+.|++++
T Consensus 330 L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~ 408 (606)
T 3vq2_A 330 LKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQH 408 (606)
T ss_dssp CCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTT
T ss_pred cceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCC
Confidence 1223333444444443321 1 2456678999999999988 455432 236899999999
Q ss_pred CcCcccCC-ccCCCCCCCCEEeCCCCcCcccCChhhhhhccCCCCcccEEEccCCcCCC--CCCCC-CCCCceEEEccCC
Q 004953 307 NKLTGTIP-SNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTN--ISGSF-NIPPNVTVRLRGN 382 (722)
Q Consensus 307 N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~ls~N~l~~--~~~~~-~~~~l~~l~l~~N 382 (722)
|++++..| ..|..+++|++|++++|++++..|..+.. +++|+.|++++|++++ ++..+ .+++|+.|++++|
T Consensus 409 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n 483 (606)
T 3vq2_A 409 STLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG-----LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC 483 (606)
T ss_dssp SEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTT-----CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred CccCCccChhhhhccccCCEEECcCCCCCccchhhhcC-----CCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC
Confidence 99998877 68899999999999999999888887764 3778999999999987 34455 7889999999999
Q ss_pred cCcCCCCcccccCCCCCCCCcccCCCCCCCCCCCCCCCCCCccCCCCCCcccccccceEEEEeeCCCCcCCCchhHHHHH
Q 004953 383 PFCLNTNAEQFCGSHSDDDNEIDRSTNSTLDCRAQSCPTDYEYSPTSPIRCFCAAPLLVGYRLKSPGLSYFPAYKNLFEE 462 (722)
Q Consensus 383 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~~~~~~p~~~~~~~ 462 (722)
++++..+ ..+.... .+...++..+..... .+ ......+.+..+++++|+++. +|.. +..
T Consensus 484 ~l~~~~~-~~~~~l~--~L~~L~Ls~N~l~~~-----------~~----~~~~~l~~L~~L~l~~N~l~~-~p~~--~~~ 542 (606)
T 3vq2_A 484 QLEQISW-GVFDTLH--RLQLLNMSHNNLLFL-----------DS----SHYNQLYSLSTLDCSFNRIET-SKGI--LQH 542 (606)
T ss_dssp CCCEECT-TTTTTCT--TCCEEECCSSCCSCE-----------EG----GGTTTCTTCCEEECTTSCCCC-EESC--GGG
T ss_pred cCCccCh-hhhcccc--cCCEEECCCCcCCCc-----------CH----HHccCCCcCCEEECCCCcCcc-cCHh--Hhh
Confidence 8875432 1111111 122333333322110 00 011223457788888888884 4443 111
Q ss_pred HH--hhhcccccceeee
Q 004953 463 YM--TSGLKLNLYQLDI 477 (722)
Q Consensus 463 ~~--~~~l~ls~n~l~~ 477 (722)
.. -..+++++|.+..
T Consensus 543 l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 543 FPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp SCTTCCEEECCSCCCCC
T ss_pred hcccCcEEEccCCCccc
Confidence 10 1456777777764
No 35
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=6.7e-30 Score=273.28 Aligned_cols=282 Identities=21% Similarity=0.307 Sum_probs=194.7
Q ss_pred ccceeEEEcCCCCCccccCccccCCCCCCEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEE
Q 004953 81 YLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQ 160 (722)
Q Consensus 81 ~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 160 (722)
+++++.|++++|.+++..+ +..+++|++|++++|.++. + +.|.++++|++|++++|.+++. +. +..+++|++|+
T Consensus 65 ~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~ 138 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLN 138 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEE
T ss_pred cCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEECcCCcccCc-hh-hccCCceeEEE
Confidence 4567777777777765433 7777777777777777764 2 3577777777777777777743 32 67777777777
Q ss_pred cccCCCCCCCchhhcCcCCCCEEECCCccccCCCCcCCCCCCccceeecccCCCCCCCCccCCCCCCCcEEECcCCCCCC
Q 004953 161 IDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEG 240 (722)
Q Consensus 161 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~ 240 (722)
+++|......+ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|.+++
T Consensus 139 l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~ 213 (347)
T 4fmz_A 139 LGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD 213 (347)
T ss_dssp CTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred CCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCC
Confidence 77775554333 37777777777777777764433 6677777777777777764332 6677777777777777764
Q ss_pred CCcchhccCCCCCcEEEccCCCCccCCCCCCCCCCccEEEccCCCCCccCCCccccCCcCEEEccCCcCcccCCccCCCC
Q 004953 241 TTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLDLSSNQLNGSIPPGRLSLNITTIKLSNNKLTGTIPSNFSGL 320 (722)
Q Consensus 241 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 320 (722)
.+. +..+++|++|++++|++++..+ +..+++|++|++++|.+++ ++.....++|++|++++|++++. ..+..+
T Consensus 214 --~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l 286 (347)
T 4fmz_A 214 --ITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISD-INAVKDLTKLKMLNVGSNQISDI--SVLNNL 286 (347)
T ss_dssp --CGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSCCCCC--GGGGGC
T ss_pred --Cch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCC-ChhHhcCCCcCEEEccCCccCCC--hhhcCC
Confidence 222 6677778888888887775544 6777778888888887773 44333346788888888877764 357777
Q ss_pred CCCCEEeCCCCcCcccCChhhhhhccCCCCcccEEEccCCcCCCCCCCCCCCCceEEEccCCcCc
Q 004953 321 PRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGSFNIPPNVTVRLRGNPFC 385 (722)
Q Consensus 321 ~~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~ls~N~l~~~~~~~~~~~l~~l~l~~N~l~ 385 (722)
++|+.|++++|++++..|..+..+ ++|+.|++++|+++++++...++++++|++++|+++
T Consensus 287 ~~L~~L~L~~n~l~~~~~~~l~~l-----~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 287 SQLNSLFLNNNQLGNEDMEVIGGL-----TNLTTLFLSQNHITDIRPLASLSKMDSADFANQVIK 346 (347)
T ss_dssp TTCSEEECCSSCCCGGGHHHHHTC-----TTCSEEECCSSSCCCCGGGGGCTTCSEESSSCC---
T ss_pred CCCCEEECcCCcCCCcChhHhhcc-----ccCCEEEccCCccccccChhhhhccceeehhhhccc
Confidence 788888888888777666666543 667778888888877766336777778888887763
No 36
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=2.4e-29 Score=267.04 Aligned_cols=265 Identities=22% Similarity=0.336 Sum_probs=179.3
Q ss_pred ceeEEEcCCCCCccccCccccCCCCCCEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEEcc
Q 004953 83 HLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQID 162 (722)
Q Consensus 83 ~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 162 (722)
+++.++++++.++ .+|..+. ++|++|+|++|.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 5777888877776 3454443 567777777777776666677777777777777777776667777777777777777
Q ss_pred cCCCCCCCchhhcCcCCCCEEECCCccccCCCCcCCCCCCccceeecccCCCCC--CCCccCCCCCCCcEEECcCCCCCC
Q 004953 163 QNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTG--YLPPELSELPKLLILQLDNNNFEG 240 (722)
Q Consensus 163 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~--~~~~~l~~l~~L~~L~l~~N~l~~ 240 (722)
+|+++. +|..+. ++|++|++++|.+++..+..+.++++|++|++++|.++. ..+.
T Consensus 109 ~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-------------------- 165 (330)
T 1xku_A 109 KNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG-------------------- 165 (330)
T ss_dssp SSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTT--------------------
T ss_pred CCcCCc-cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChh--------------------
Confidence 777663 333332 456666666666555444445555555555555555532 3333
Q ss_pred CCcchhccCCCCCcEEEccCCCCccCCCCCCCCCCccEEEccCCCCCccCCCccc-cCCcCEEEccCCcCcccCCccCCC
Q 004953 241 TTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLDLSSNQLNGSIPPGRL-SLNITTIKLSNNKLTGTIPSNFSG 319 (722)
Q Consensus 241 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~-~~~L~~L~L~~N~l~~~~~~~~~~ 319 (722)
.+..+++|++|++++|.++.....+. ++|++|++++|++++..|.... .++|++|++++|.+++..+..|..
T Consensus 166 -----~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 238 (330)
T 1xku_A 166 -----AFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 238 (330)
T ss_dssp -----GGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG
T ss_pred -----hccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC
Confidence 44445555555555555543322222 5677777777777644343321 257888888888888877778999
Q ss_pred CCCCCEEeCCCCcCcccCChhhhhhccCCCCcccEEEccCCcCCCCCCCC--------CCCCceEEEccCCcCcC
Q 004953 320 LPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGSF--------NIPPNVTVRLRGNPFCL 386 (722)
Q Consensus 320 l~~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~ls~N~l~~~~~~~--------~~~~l~~l~l~~N~l~~ 386 (722)
+++|++|++++|+++ .+|..+.. +++|+.|++++|+|+++++.. ..+.+..+++++||+..
T Consensus 239 l~~L~~L~L~~N~l~-~lp~~l~~-----l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 239 TPHLRELHLNNNKLV-KVPGGLAD-----HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp STTCCEEECCSSCCS-SCCTTTTT-----CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred CCCCCEEECCCCcCc-cCChhhcc-----CCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence 999999999999999 88887754 478999999999999986533 23678899999999864
No 37
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.7e-29 Score=268.46 Aligned_cols=288 Identities=24% Similarity=0.317 Sum_probs=240.2
Q ss_pred CCCCCCCCceeecCCCCCC----CCccceeEEEcCCCCCccccCccccCCCCCCEEECCCCCCccCCCccccCCCCCCEE
Q 004953 60 GDPCTSNWTGVLCFNTTMD----DGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELL 135 (722)
Q Consensus 60 ~~~C~~~w~gv~C~~~~~~----~~~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 135 (722)
...|.|.|+.+.|.+.... ...++++.|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|
T Consensus 28 p~~c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 107 (332)
T 2ft3_A 28 PFGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKL 107 (332)
T ss_dssp CSSCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEE
T ss_pred CCCCcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEE
Confidence 3457778999999754421 234589999999999998888899999999999999999998889999999999999
Q ss_pred eccCCcCCCCCCccCCCCCCCcEEEcccCCCCCCCchhhcCcCCCCEEECCCcccc--CCCCcCCCCCCccceeecccCC
Q 004953 136 LLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSIS--GQIPPELSRLPSLVHMLLDNNN 213 (722)
Q Consensus 136 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~~~~l~~l~~L~~L~L~~N~ 213 (722)
++++|.++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.++ +..+..+..+ +|++|++++|+
T Consensus 108 ~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~ 183 (332)
T 2ft3_A 108 YISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK 183 (332)
T ss_dssp ECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB
T ss_pred ECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC
Confidence 99999998 5666555 89999999999999887888999999999999999996 3677888888 99999999999
Q ss_pred CCCCCCccCCCCCCCcEEECcCCCCCCCCcchhccCCCCCcEEEccCCCCccCCC-CCCCCCCccEEEccCCCCCccCCC
Q 004953 214 LTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMP-DLSRIPNLGYLDLSSNQLNGSIPP 292 (722)
Q Consensus 214 l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~ip~ 292 (722)
+++ +|..+. ++|++|++++|.+++ ..+..+..+++|+.|++++|++++..+ .+..+++|++|++++|+++ .+|.
T Consensus 184 l~~-l~~~~~--~~L~~L~l~~n~i~~-~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~ 258 (332)
T 2ft3_A 184 LTG-IPKDLP--ETLNELHLDHNKIQA-IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPA 258 (332)
T ss_dssp CSS-CCSSSC--SSCSCCBCCSSCCCC-CCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCT
T ss_pred CCc-cCcccc--CCCCEEECCCCcCCc-cCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecCh
Confidence 986 555554 789999999999987 356789999999999999999998776 4888999999999999999 7887
Q ss_pred ccc-cCCcCEEEccCCcCcccCCccCCCC------CCCCEEeCCCCcCc--ccCChhhhhhccCCCCcccEEEccCCc
Q 004953 293 GRL-SLNITTIKLSNNKLTGTIPSNFSGL------PRLQRLFIANNSLS--GSIPSSIWQSRTLNATETFILDFQNNN 361 (722)
Q Consensus 293 ~~~-~~~L~~L~L~~N~l~~~~~~~~~~l------~~L~~L~L~~N~l~--~~ip~~~~~~~~l~~~~L~~L~ls~N~ 361 (722)
... .++|++|++++|++++..+..|... ++|+.|++++|++. +..|..+.. +++|+.+++++|+
T Consensus 259 ~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~-----l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 259 GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRC-----VTDRLAIQFGNYK 331 (332)
T ss_dssp TGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTT-----BCCSTTEEC----
T ss_pred hhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccc-----cchhhhhhccccc
Confidence 533 3689999999999998888877654 67999999999987 444444433 4778899999884
No 38
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=3e-29 Score=279.41 Aligned_cols=344 Identities=24% Similarity=0.291 Sum_probs=204.9
Q ss_pred cceeEEEcCCCCCccccCccccCCCCCCEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEEc
Q 004953 82 LHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQI 161 (722)
Q Consensus 82 ~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 161 (722)
.+++.|++.++.+.. +| .+..+++|++|+|++|.+++..| +.++++|++|++++|.+++..+ +.++++|++|++
T Consensus 46 ~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L 119 (466)
T 1o6v_A 46 DQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 119 (466)
T ss_dssp HTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred ccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEEC
Confidence 466777777776654 33 36667777777777777765433 6777777777777777765433 677777777777
Q ss_pred ccCCCCCCCchhhcCcCCCCEEECCCccccCCCCcCCCCCCccceeecccCCCCCCCCccCCCCCCCcEEECcCCCCCCC
Q 004953 162 DQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGT 241 (722)
Q Consensus 162 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~ 241 (722)
++|.+++..+ +.++++|++|++++|.+++. + .+..+++|++|+++ |.+.+.. .+..+++|+.|++++|.+++
T Consensus 120 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~- 191 (466)
T 1o6v_A 120 FNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSD- 191 (466)
T ss_dssp CSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCCC-
T ss_pred CCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCCC-
Confidence 7777765432 66777777777777776642 2 36666777777765 3444322 26666777777777777653
Q ss_pred CcchhccCCCCCcEEEccCCCCccCCCCCCCCCCccEEEccCCCCCccCCCccccCCcCEEEccCCcCcccCCccCCCCC
Q 004953 242 TIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLDLSSNQLNGSIPPGRLSLNITTIKLSNNKLTGTIPSNFSGLP 321 (722)
Q Consensus 242 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 321 (722)
+ ..+..+++|+.|++++|.+++..+ +..+++|++|++++|+++ .++.....++|++|++++|.+++..+ +..++
T Consensus 192 -~-~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~ 265 (466)
T 1o6v_A 192 -I-SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLK-DIGTLASLTNLTDLDLANNQISNLAP--LSGLT 265 (466)
T ss_dssp -C-GGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCC-CCGGGGGCTTCSEEECCSSCCCCCGG--GTTCT
T ss_pred -C-hhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcc-cchhhhcCCCCCEEECCCCccccchh--hhcCC
Confidence 2 236666777777777777665443 555666777777777766 33332233567777777777765544 66667
Q ss_pred CCCEEeCCCCcCcccCChhhhhhccCCCCcccEEEccCCcCCCCCCCCCCCCceEEEccCCcCcCCCCcccccCCCCCCC
Q 004953 322 RLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGSFNIPPNVTVRLRGNPFCLNTNAEQFCGSHSDDD 401 (722)
Q Consensus 322 ~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~ls~N~l~~~~~~~~~~~l~~l~l~~N~l~~~~~~~~~~~~~~~~~ 401 (722)
+|+.|++++|++++..| +. .+++|+.|++++|+++++++...+++|+.|++++|++.+..+ ...+. .+
T Consensus 266 ~L~~L~l~~n~l~~~~~--~~-----~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~----~L 333 (466)
T 1o6v_A 266 KLTELKLGANQISNISP--LA-----GLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP-VSSLT----KL 333 (466)
T ss_dssp TCSEEECCSSCCCCCGG--GT-----TCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG-GGGCT----TC
T ss_pred CCCEEECCCCccCcccc--cc-----CCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchh-hccCc----cC
Confidence 77777777777664332 22 235666777777777666542256667777777776655422 11111 11
Q ss_pred CcccCCCCCCCCCCCCCCCCCCccCCCCCCcccccccceEEEEeeCCCCcCCCchhHHHHHHHhhhcccccceeee
Q 004953 402 NEIDRSTNSTLDCRAQSCPTDYEYSPTSPIRCFCAAPLLVGYRLKSPGLSYFPAYKNLFEEYMTSGLKLNLYQLDI 477 (722)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~~~~~~p~~~~~~~~~~~~l~ls~n~l~~ 477 (722)
....+..+..... ......+.+..++++.|.+++..|... +.. -..|+++.|.+++
T Consensus 334 ~~L~l~~n~l~~~-----------------~~l~~l~~L~~L~l~~n~l~~~~~~~~-l~~--L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 334 QRLFFYNNKVSDV-----------------SSLANLTNINWLSAGHNQISDLTPLAN-LTR--ITQLGLNDQAWTN 389 (466)
T ss_dssp CEEECCSSCCCCC-----------------GGGTTCTTCCEEECCSSCCCBCGGGTT-CTT--CCEEECCCEEEEC
T ss_pred CEeECCCCccCCc-----------------hhhccCCCCCEEeCCCCccCccchhhc-CCC--CCEEeccCCcccC
Confidence 1122221111000 001123456788899999988877321 110 1457788888775
No 39
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=1.6e-28 Score=271.93 Aligned_cols=211 Identities=22% Similarity=0.196 Sum_probs=112.3
Q ss_pred cceeEEEcCCCCCccccCccccCCCCCCEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEEc
Q 004953 82 LHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQI 161 (722)
Q Consensus 82 ~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 161 (722)
++++.|++++|.+++. | .++.+++|++|+|++|.+++. | ++.+++|++|++++|.+++. + ++++++|++|++
T Consensus 42 ~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNC 113 (457)
T ss_dssp TTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEEC
Confidence 3556666666666543 2 455566666666666666543 2 55566666666666666543 2 555666666666
Q ss_pred ccCCCCCCCchhhcCcCCCCEEECCCccccCCCCcCCCCCCccceeecccCCCCCCCCccCCCCCCCcEEECcCCCCCCC
Q 004953 162 DQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGT 241 (722)
Q Consensus 162 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~ 241 (722)
++|++++. + +..+++|++|++++|.+++. .+..+++|++|++++|+..+.+ .+..+++|+.|++++|++++
T Consensus 114 ~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~- 184 (457)
T 3bz5_A 114 DTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE- 184 (457)
T ss_dssp CSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-
T ss_pred CCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-
Confidence 66665542 2 55556666666666665542 2455555555555555333333 24455555555555555553
Q ss_pred CcchhccCCCCCcEEEccCCCCccCCCCCCCCCCccEEEccCCCCCccCCCccccCCcCEEEccCCcCcccCCcc
Q 004953 242 TIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLDLSSNQLNGSIPPGRLSLNITTIKLSNNKLTGTIPSN 316 (722)
Q Consensus 242 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~L~~L~L~~N~l~~~~~~~ 316 (722)
+| +..+++|+.|++++|++++. .+..+++|++|++++|++++ +| ....++|+.|++++|++++..+..
T Consensus 185 -l~--l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~~-ip-~~~l~~L~~L~l~~N~l~~~~~~~ 252 (457)
T 3bz5_A 185 -LD--VSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTE-ID-VTPLTQLTYFDCSVNPLTELDVST 252 (457)
T ss_dssp -CC--CTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCSC-CC-CTTCTTCSEEECCSSCCSCCCCTT
T ss_pred -ec--cccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCcccc-cC-ccccCCCCEEEeeCCcCCCcCHHH
Confidence 22 44555555555555555543 24455555555555555553 44 112245555555555555544333
No 40
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=7.3e-29 Score=276.23 Aligned_cols=281 Identities=25% Similarity=0.322 Sum_probs=221.1
Q ss_pred CccceeEEEcCCCCCccccCccccCCCCCCEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEE
Q 004953 80 GYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRI 159 (722)
Q Consensus 80 ~~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 159 (722)
.+++++.|++++|.+++..+ +.++++|++|++++|.+++..+ +.++++|++|++++|.+++..+ +.++++|++|
T Consensus 66 ~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 139 (466)
T 1o6v_A 66 YLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRL 139 (466)
T ss_dssp GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEE
T ss_pred hhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEE
Confidence 35789999999999987654 9999999999999999996655 9999999999999999996543 8999999999
Q ss_pred EcccCCCCCCCchhhcCcCCCCEEECCCccccCCCCcCCCCCCccceeecccCCCCCCCCccCCCCCCCcEEECcCCCCC
Q 004953 160 QIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFE 239 (722)
Q Consensus 160 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~ 239 (722)
++++|.+++. + .+.++++|++|+++ |.+.+.. .+.++++|++|++++|.+++. ..+..+++|+.|++++|.++
T Consensus 140 ~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~ 212 (466)
T 1o6v_A 140 ELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQIS 212 (466)
T ss_dssp EEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred ECCCCccCCC-h-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccc
Confidence 9999999863 3 47888888888886 4454332 377888888888888888754 34778888888888888887
Q ss_pred CCCcchhccCCCCCcEEEccCCCCccCCCCCCCCCCccEEEccCCCCCccCCCccccCCcCEEEccCCcCcccCCccCCC
Q 004953 240 GTTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLDLSSNQLNGSIPPGRLSLNITTIKLSNNKLTGTIPSNFSG 319 (722)
Q Consensus 240 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 319 (722)
+. .+ +..+++|+.|++++|++++. +.+..+++|+.|++++|.+++..+ ....++|++|++++|.+++..+ +..
T Consensus 213 ~~-~~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~ 285 (466)
T 1o6v_A 213 DI-TP--LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP--LAG 285 (466)
T ss_dssp CC-GG--GGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG--GTT
T ss_pred cc-cc--ccccCCCCEEECCCCCcccc-hhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc--ccC
Confidence 52 23 67788888888888888753 457778888888888888885444 3334688888888888886654 778
Q ss_pred CCCCCEEeCCCCcCcccCChhhhhhccCCCCcccEEEccCCcCCCCCCCCCCCCceEEEccCCcCcCC
Q 004953 320 LPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGSFNIPPNVTVRLRGNPFCLN 387 (722)
Q Consensus 320 l~~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~ls~N~l~~~~~~~~~~~l~~l~l~~N~l~~~ 387 (722)
+++|+.|++++|++++..| +. .+++|+.|++++|+++++++...+++++.|++++|++++.
T Consensus 286 l~~L~~L~L~~n~l~~~~~--~~-----~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~ 346 (466)
T 1o6v_A 286 LTALTNLELNENQLEDISP--IS-----NLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV 346 (466)
T ss_dssp CTTCSEEECCSSCCSCCGG--GG-----GCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred CCccCeEEcCCCcccCchh--hc-----CCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCc
Confidence 8888888888888886443 33 2467888888888888876633778888888888888764
No 41
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=3.9e-29 Score=271.86 Aligned_cols=267 Identities=20% Similarity=0.206 Sum_probs=231.3
Q ss_pred cCCCCCCEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEEcccCCCCCCCchhhcCcCCCCE
Q 004953 103 GRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRH 182 (722)
Q Consensus 103 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 182 (722)
..++++++|++++|.++...+..|.++++|++|+|++|.+++..+..|..+++|++|++++|.+++..|..|.++++|++
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 35689999999999998665566899999999999999999888889999999999999999999988999999999999
Q ss_pred EECCCccccCCCCcCCCCCCccceeecccCCCCCCCCccCCCCCCCcEEECcCCCCCCCCcchhccCCCCCcEEEccCCC
Q 004953 183 FHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCS 262 (722)
Q Consensus 183 L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 262 (722)
|++++|.++...+..|.++++|++|++++|++++..+..+..+++|+.|++++|.+++. .+..+++|+.|++++|.
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV----DLSLIPSLFHANVSYNL 197 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC----CGGGCTTCSEEECCSSC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc----ccccccccceeeccccc
Confidence 99999999976666689999999999999999988888999999999999999999863 35678999999999998
Q ss_pred CccCCCCCCCCCCccEEEccCCCCCccCCCccccCCcCEEEccCCcCcccCCccCCCCCCCCEEeCCCCcCcccCChhhh
Q 004953 263 LQGPMPDLSRIPNLGYLDLSSNQLNGSIPPGRLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIW 342 (722)
Q Consensus 263 l~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ip~~~~ 342 (722)
+++. ...++|++|++++|.++ .+|.. ...+|+.|++++|.+++. ..+..+++|++|++++|++++..|..+.
T Consensus 198 l~~~----~~~~~L~~L~l~~n~l~-~~~~~-~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 269 (390)
T 3o6n_A 198 LSTL----AIPIAVEELDASHNSIN-VVRGP-VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV 269 (390)
T ss_dssp CSEE----ECCSSCSEEECCSSCCC-EEECC-CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred cccc----CCCCcceEEECCCCeee-ecccc-ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcc
Confidence 8753 23457999999999988 44543 456899999999999864 5788899999999999999988787776
Q ss_pred hhccCCCCcccEEEccCCcCCCCCCCC-CCCCceEEEccCCcCcC
Q 004953 343 QSRTLNATETFILDFQNNNLTNISGSF-NIPPNVTVRLRGNPFCL 386 (722)
Q Consensus 343 ~~~~l~~~~L~~L~ls~N~l~~~~~~~-~~~~l~~l~l~~N~l~~ 386 (722)
. +++|+.|++++|++++++... .++++++|++++|++..
T Consensus 270 ~-----l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~ 309 (390)
T 3o6n_A 270 K-----MQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLH 309 (390)
T ss_dssp T-----CSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCC
T ss_pred c-----cccCCEEECCCCcCcccCcccCCCCCCCEEECCCCccee
Confidence 4 367889999999998887655 68889999999998873
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=1.3e-28 Score=282.75 Aligned_cols=266 Identities=20% Similarity=0.211 Sum_probs=236.9
Q ss_pred CCCCCCEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEEcccCCCCCCCchhhcCcCCCCEE
Q 004953 104 RLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHF 183 (722)
Q Consensus 104 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 183 (722)
.+++++.|++++|.+....+..|.++++|++|+|++|.+++..|..|..+++|++|+|++|.+++..|..|+++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 46899999999999997777778999999999999999998888899999999999999999999999999999999999
Q ss_pred ECCCccccCCCCcCCCCCCccceeecccCCCCCCCCccCCCCCCCcEEECcCCCCCCCCcchhccCCCCCcEEEccCCCC
Q 004953 184 HMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSL 263 (722)
Q Consensus 184 ~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 263 (722)
+|++|.+++..+..|.++++|++|++++|.+++..|..|..+++|+.|++++|.+++. .+..+++|+.|++++|.+
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~----~~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV----DLSLIPSLFHANVSYNLL 204 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC----CGGGCTTCSEEECCSSCC
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc----ChhhhhhhhhhhcccCcc
Confidence 9999999977777789999999999999999999999999999999999999999863 356789999999999998
Q ss_pred ccCCCCCCCCCCccEEEccCCCCCccCCCccccCCcCEEEccCCcCcccCCccCCCCCCCCEEeCCCCcCcccCChhhhh
Q 004953 264 QGPMPDLSRIPNLGYLDLSSNQLNGSIPPGRLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQ 343 (722)
Q Consensus 264 ~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ip~~~~~ 343 (722)
++. ...++|+.|++++|.++ .++.. ...+|+.|+|++|.+++. ..+..+++|+.|+|++|.+++.+|..+..
T Consensus 205 ~~l----~~~~~L~~L~ls~n~l~-~~~~~-~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 276 (597)
T 3oja_B 205 STL----AIPIAVEELDASHNSIN-VVRGP-VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVK 276 (597)
T ss_dssp SEE----ECCTTCSEEECCSSCCC-EEECS-CCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred ccc----cCCchhheeeccCCccc-ccccc-cCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcC
Confidence 753 34468999999999998 44443 446899999999999974 67899999999999999999988888865
Q ss_pred hccCCCCcccEEEccCCcCCCCCCCC-CCCCceEEEccCCcCcC
Q 004953 344 SRTLNATETFILDFQNNNLTNISGSF-NIPPNVTVRLRGNPFCL 386 (722)
Q Consensus 344 ~~~l~~~~L~~L~ls~N~l~~~~~~~-~~~~l~~l~l~~N~l~~ 386 (722)
+ ++|+.|+|++|.+++++... .+++|+.|++++|++..
T Consensus 277 l-----~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~ 315 (597)
T 3oja_B 277 M-----QRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLH 315 (597)
T ss_dssp C-----SSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCC
T ss_pred c-----cCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCc
Confidence 4 78999999999999987766 68999999999999873
No 43
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=2.2e-28 Score=261.45 Aligned_cols=283 Identities=20% Similarity=0.296 Sum_probs=241.6
Q ss_pred ccceeEEEcCCCCCccccCccccCCCCCCEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEE
Q 004953 81 YLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQ 160 (722)
Q Consensus 81 ~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 160 (722)
+++++.|+++++.+... + .+..+++|++|++++|.+++..+ +.++++|++|++++|.++. + +.+..+++|++|+
T Consensus 43 l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~ 116 (347)
T 4fmz_A 43 LESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELY 116 (347)
T ss_dssp HTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEE
T ss_pred cccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEE
Confidence 46899999999999754 3 48999999999999999986544 9999999999999999985 3 4699999999999
Q ss_pred cccCCCCCCCchhhcCcCCCCEEECCCccccCCCCcCCCCCCccceeecccCCCCCCCCccCCCCCCCcEEECcCCCCCC
Q 004953 161 IDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEG 240 (722)
Q Consensus 161 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~ 240 (722)
+++|.+++..+ +..+++|++|++++|.....++ .+..+++|++|++++|.+++..+ +..+++|+.|++++|.+++
T Consensus 117 l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~ 191 (347)
T 4fmz_A 117 LNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED 191 (347)
T ss_dssp CTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCC
T ss_pred CcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccc
Confidence 99999986533 8899999999999997665444 48999999999999999986544 8899999999999999985
Q ss_pred CCcchhccCCCCCcEEEccCCCCccCCCCCCCCCCccEEEccCCCCCccCCCccccCCcCEEEccCCcCcccCCccCCCC
Q 004953 241 TTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLDLSSNQLNGSIPPGRLSLNITTIKLSNNKLTGTIPSNFSGL 320 (722)
Q Consensus 241 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 320 (722)
++. +..+++|+.|++++|.+++..+ +..+++|++|++++|.+++ ++.....++|++|++++|.+++. ..+..+
T Consensus 192 --~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l 264 (347)
T 4fmz_A 192 --ISP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITD-LSPLANLSQLTWLEIGTNQISDI--NAVKDL 264 (347)
T ss_dssp --CGG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSCCCCC--GGGTTC
T ss_pred --ccc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCC-CcchhcCCCCCEEECCCCccCCC--hhHhcC
Confidence 444 8899999999999999987555 7889999999999999984 44443457999999999999975 578999
Q ss_pred CCCCEEeCCCCcCcccCChhhhhhccCCCCcccEEEccCCcCCCCCCC-C-CCCCceEEEccCCcCcCCC
Q 004953 321 PRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGS-F-NIPPNVTVRLRGNPFCLNT 388 (722)
Q Consensus 321 ~~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~ls~N~l~~~~~~-~-~~~~l~~l~l~~N~l~~~~ 388 (722)
++|++|++++|++++. | .+.. +++|+.|++++|++++.++. + .+++++.|++++|++++..
T Consensus 265 ~~L~~L~l~~n~l~~~-~-~~~~-----l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 327 (347)
T 4fmz_A 265 TKLKMLNVGSNQISDI-S-VLNN-----LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR 327 (347)
T ss_dssp TTCCEEECCSSCCCCC-G-GGGG-----CTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCG
T ss_pred CCcCEEEccCCccCCC-h-hhcC-----CCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccccc
Confidence 9999999999999863 3 3433 47899999999999987644 4 7899999999999998654
No 44
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=1.1e-28 Score=272.92 Aligned_cols=268 Identities=25% Similarity=0.353 Sum_probs=195.4
Q ss_pred cceeEEEcCCCCCccccCccccCCCCCCEEECCCCCCccCCCccccCCCCC-------------CEEeccCCcCCCCCCc
Q 004953 82 LHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSL-------------ELLLLNGNELTGSLPE 148 (722)
Q Consensus 82 ~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L-------------~~L~L~~n~l~~~~p~ 148 (722)
.+++.|++++|++ +.+|+.|+++++|++|++++|.+.+.+|..++++++| ++|++++|.+++ +|.
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~ 88 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPE 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCS
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCC
Confidence 4789999999999 7899999999999999999999999999999888764 999999999985 444
Q ss_pred cCCCCCCCcEEEcccCCCCCCCchhhcCcCCCCEEECCCccccCCCCcCCCCCCccceeecccCCCCCCCCccCCCCCCC
Q 004953 149 ELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKL 228 (722)
Q Consensus 149 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L 228 (722)
. .++|++|++++|.+++ +|.. +++|++|++++|.+++. +.. .++|++|++++|++++ +| .++.+++|
T Consensus 89 ~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L 155 (454)
T 1jl5_A 89 L---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFL 155 (454)
T ss_dssp C---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSS-CC-CCTTCTTC
T ss_pred C---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCC
Confidence 2 4789999999999987 5543 47899999999988853 221 2689999999999986 66 58999999
Q ss_pred cEEECcCCCCCCCCcchhccCCCCCcEEEccCCCCccCCCCCCCCCCccEEEccCCCCCccCCCccccCCcCEEEccCCc
Q 004953 229 LILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLDLSSNQLNGSIPPGRLSLNITTIKLSNNK 308 (722)
Q Consensus 229 ~~L~l~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~L~~L~L~~N~ 308 (722)
++|++++|++++ +|.. ..+|++|++++|++++ .|.+..+++|++|++++|++++ +|.. ..+|++|++++|+
T Consensus 156 ~~L~l~~N~l~~--lp~~---~~~L~~L~L~~n~l~~-l~~~~~l~~L~~L~l~~N~l~~-l~~~--~~~L~~L~l~~n~ 226 (454)
T 1jl5_A 156 KIIDVDNNSLKK--LPDL---PPSLEFIAAGNNQLEE-LPELQNLPFLTAIYADNNSLKK-LPDL--PLSLESIVAGNNI 226 (454)
T ss_dssp CEEECCSSCCSC--CCCC---CTTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSCCSS-CCCC--CTTCCEEECCSSC
T ss_pred CEEECCCCcCcc--cCCC---cccccEEECcCCcCCc-CccccCCCCCCEEECCCCcCCc-CCCC--cCcccEEECcCCc
Confidence 999999999885 5543 3589999999999987 4578889999999999999984 6543 3589999999999
Q ss_pred CcccCCccCCCCCCCCEEeCCCCcCcccCChhhhhhccCCCCcccEEEccCCcCCCCCCCCCCCCceEEEccCCcCcC
Q 004953 309 LTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGSFNIPPNVTVRLRGNPFCL 386 (722)
Q Consensus 309 l~~~~~~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~ls~N~l~~~~~~~~~~~l~~l~l~~N~l~~ 386 (722)
++ .+| .+..+++|++|++++|++++ +|.. .++|+.|++++|++++++.. .++++.|++++|.+++
T Consensus 227 l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~--------~~~L~~L~l~~N~l~~l~~~--~~~L~~L~ls~N~l~~ 291 (454)
T 1jl5_A 227 LE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL--------PPSLEALNVRDNYLTDLPEL--PQSLTFLDVSENIFSG 291 (454)
T ss_dssp CS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC--------CTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSE
T ss_pred CC-ccc-ccCCCCCCCEEECCCCcCCc-cccc--------ccccCEEECCCCcccccCcc--cCcCCEEECcCCccCc
Confidence 98 556 48889999999999999984 5542 25678888888888876543 3667777777777765
No 45
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=8.8e-30 Score=267.42 Aligned_cols=255 Identities=17% Similarity=0.269 Sum_probs=145.3
Q ss_pred CCCCCCCCceeecCCCCCCCCccceeEEEcCCCCCccccCccccCCCCCCEEECCCCCCccCCCccccCCCCCCEEeccC
Q 004953 60 GDPCTSNWTGVLCFNTTMDDGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNG 139 (722)
Q Consensus 60 ~~~C~~~w~gv~C~~~~~~~~~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 139 (722)
++.|.|.|+++.|.+... + .+|..+. ++|++|+|++|.++...+..|.++++|++|+|++
T Consensus 2 P~~C~C~~~~l~c~~~~l-----------------~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~ 61 (306)
T 2z66_A 2 PSRCSCSGTEIRCNSKGL-----------------T-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSS 61 (306)
T ss_dssp CTTCEEETTEEECCSSCC-----------------S-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred cCCCeeCCCEEEcCCCCc-----------------c-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCC
Confidence 356888999999965431 1 1222121 3455555555555533333345555555555555
Q ss_pred CcCCCC--CCccCCCCCCCcEEEcccCCCCCCCchhhcCcCCCCEEECCCccccCCCC-cCCCCCCccceeecccCCCCC
Q 004953 140 NELTGS--LPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIP-PELSRLPSLVHMLLDNNNLTG 216 (722)
Q Consensus 140 n~l~~~--~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~l~~l~~L~~L~L~~N~l~~ 216 (722)
|.++.. .+..+..+++|++|++++|.++ .+|..+.++++|++|++++|.+++..+ ..+..+++|++|++++|.+++
T Consensus 62 n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 140 (306)
T 2z66_A 62 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 140 (306)
T ss_dssp SCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEE
T ss_pred CccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCc
Confidence 555421 1333444555555555555554 234445555566666666665554433 345555666666666666655
Q ss_pred CCCccCCCCCCCcEEECcCCCCCCCCcchhccCCCCCcEEEccCCCCccCCC-CCCCCCCccEEEccCCCCCccCCCccc
Q 004953 217 YLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMP-DLSRIPNLGYLDLSSNQLNGSIPPGRL 295 (722)
Q Consensus 217 ~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~ip~~~~ 295 (722)
..+..+..+++|++|++++|.+++...|..+..+++|++|++++|++++..+ .+..+++|++|++++|++++ ++...+
T Consensus 141 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~ 219 (306)
T 2z66_A 141 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-LDTFPY 219 (306)
T ss_dssp CSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB-CCSGGG
T ss_pred cchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc-cChhhc
Confidence 5555566666666666666665532245556666666666666666665543 35566666666666666663 332212
Q ss_pred c--CCcCEEEccCCcCcccCCccCCCCC-CCCEEeCCCCcCccc
Q 004953 296 S--LNITTIKLSNNKLTGTIPSNFSGLP-RLQRLFIANNSLSGS 336 (722)
Q Consensus 296 ~--~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~ 336 (722)
. ++|++|++++|++++..|..+..++ +|++|+|++|++++.
T Consensus 220 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 220 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp TTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred cCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 2 4677777777777777777777764 777777777777654
No 46
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=2.1e-28 Score=271.41 Aligned_cols=230 Identities=22% Similarity=0.344 Sum_probs=148.0
Q ss_pred CCCCEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEEcccCCCCCCCchhhcCcCCCCEEEC
Q 004953 106 SYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHM 185 (722)
Q Consensus 106 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 185 (722)
++|++|+|++|++++..|..|.++++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..|.++++|++|+|
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 57788888888888777777888888888888888877776677777777777777777777665566666666666666
Q ss_pred CCccccCCCCcCCCCCCccceeecccC-CCCCCCCccCCCCCCCcEEECcCCCCCCCCcchhccCCCCCcEEEccCCCCc
Q 004953 186 NNNSISGQIPPELSRLPSLVHMLLDNN-NLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQ 264 (722)
Q Consensus 186 ~~N~l~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 264 (722)
++|.++...+..|.++++|++|++++| .+....+. .+..+++|++|+|++|+++
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~-------------------------~~~~l~~L~~L~L~~n~l~ 209 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEG-------------------------AFEGLFNLKYLNLGMCNIK 209 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT-------------------------TTTTCTTCCEEECTTSCCS
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChh-------------------------hccCCCCCCEEECCCCccc
Confidence 666666544445555555555555542 22222222 2334444444444444444
Q ss_pred cCCCCCCCCCCccEEEccCCCCCccCCCccccCCcCEEEccCCcCcccCCccCCCCCCCCEEeCCCCcCcccCChhhhhh
Q 004953 265 GPMPDLSRIPNLGYLDLSSNQLNGSIPPGRLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQS 344 (722)
Q Consensus 265 ~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~ 344 (722)
+. +.+..+++| ++|+|++|++++..|..|..+++|+.|+|++|++++..|..+..
T Consensus 210 ~~-~~~~~l~~L-----------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~- 264 (452)
T 3zyi_A 210 DM-PNLTPLVGL-----------------------EELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDG- 264 (452)
T ss_dssp SC-CCCTTCTTC-----------------------CEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTT-
T ss_pred cc-ccccccccc-----------------------cEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcC-
Confidence 22 223334444 44444444444555556677777777777777777666655543
Q ss_pred ccCCCCcccEEEccCCcCCCCCCCC--CCCCceEEEccCCcCcCCCC
Q 004953 345 RTLNATETFILDFQNNNLTNISGSF--NIPPNVTVRLRGNPFCLNTN 389 (722)
Q Consensus 345 ~~l~~~~L~~L~ls~N~l~~~~~~~--~~~~l~~l~l~~N~l~~~~~ 389 (722)
+++|+.|+|++|+|+++++.. .+++++.|++++|||.|+|.
T Consensus 265 ----l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 265 ----LASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp ----CTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred ----CCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence 356777777777777766543 57889999999999999986
No 47
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=3.2e-29 Score=268.78 Aligned_cols=253 Identities=18% Similarity=0.203 Sum_probs=116.5
Q ss_pred CCCEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEEcccCCCCCCCchhhcCcCCCCEEECC
Q 004953 107 YLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMN 186 (722)
Q Consensus 107 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 186 (722)
+|++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|++++..+..|.++++|++|+++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 44444444444444333344444444444444444444444444444444444444444443333334444444444444
Q ss_pred CccccCCCC-cCCCCCCccceeecccC-CCCCCCCccCCCCCCCcEEECcCCCCCCCCcchhccCCCCCcEEEccCCCCc
Q 004953 187 NNSISGQIP-PELSRLPSLVHMLLDNN-NLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQ 264 (722)
Q Consensus 187 ~N~l~~~~~-~~l~~l~~L~~L~L~~N-~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 264 (722)
+|.++...+ ..+..+++|++|++++| .++...+..+..+++|++|++++|.+++ ..|..+..+++|++|++++|+++
T Consensus 133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~ 211 (353)
T 2z80_A 133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS-YEPKSLKSIQNVSHLILHMKQHI 211 (353)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE-ECTTTTTTCSEEEEEEEECSCST
T ss_pred CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc-cCHHHHhccccCCeecCCCCccc
Confidence 444443222 23444444444444444 2333334444444444444444444443 23444444444444444444443
Q ss_pred cCCCC-CCCCCCccEEEccCCCCCccCCCc----cccCCcCEEEccCCcCcc----cCCccCCCCCCCCEEeCCCCcCcc
Q 004953 265 GPMPD-LSRIPNLGYLDLSSNQLNGSIPPG----RLSLNITTIKLSNNKLTG----TIPSNFSGLPRLQRLFIANNSLSG 335 (722)
Q Consensus 265 ~~~~~-l~~l~~L~~L~Ls~N~l~~~ip~~----~~~~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~L~~N~l~~ 335 (722)
..... +..+++|+.|++++|.+++..+.. .....++.++|+++.+++ .+|..+..+++|+.|++++|+++
T Consensus 212 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~- 290 (353)
T 2z80_A 212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK- 290 (353)
T ss_dssp THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-
T ss_pred cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-
Confidence 22111 222444555555555444322111 112345555555555544 24445556666666666666665
Q ss_pred cCChhhhhhccCCCCcccEEEccCCcCCCC
Q 004953 336 SIPSSIWQSRTLNATETFILDFQNNNLTNI 365 (722)
Q Consensus 336 ~ip~~~~~~~~l~~~~L~~L~ls~N~l~~~ 365 (722)
.+|..++. .+++|+.|++++|++++.
T Consensus 291 ~i~~~~~~----~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 291 SVPDGIFD----RLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp CCCTTTTT----TCTTCCEEECCSSCBCCC
T ss_pred ccCHHHHh----cCCCCCEEEeeCCCccCc
Confidence 45544321 234566666666666553
No 48
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=4.8e-28 Score=267.58 Aligned_cols=226 Identities=22% Similarity=0.269 Sum_probs=163.2
Q ss_pred CCCCEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEEcccCCCCCCCchhhcCcCCCCEEEC
Q 004953 106 SYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHM 185 (722)
Q Consensus 106 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 185 (722)
++++.|+|++|++++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|+++...+..|..+++|++|+|
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 56777777777777777777777777777777777777666677777777777777777777666667777777777777
Q ss_pred CCccccCCCCcCCCCCCccceeecccC-CCCCCCCccCCCCCCCcEEECcCCCCCCCCcchhccCCCCCcEEEccCCCCc
Q 004953 186 NNNSISGQIPPELSRLPSLVHMLLDNN-NLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQ 264 (722)
Q Consensus 186 ~~N~l~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 264 (722)
++|.++...+..|..+++|++|++++| .+....+..|..+++|++|++++|.++. +| .+..+++|+.|+|++|+++
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--~~-~~~~l~~L~~L~Ls~N~l~ 220 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE--IP-NLTPLIKLDELDLSGNHLS 220 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS--CC-CCTTCSSCCEEECTTSCCC
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc--cc-ccCCCcccCEEECCCCccC
Confidence 777777666667777777777777774 4444444467777778888888777763 44 3667777777777777777
Q ss_pred cCCC-CCCCCCCccEEEccCCCCCccCCCcccc--CCcCEEEccCCcCcccCCccCCCCCCCCEEeCCCCcCcc
Q 004953 265 GPMP-DLSRIPNLGYLDLSSNQLNGSIPPGRLS--LNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSG 335 (722)
Q Consensus 265 ~~~~-~l~~l~~L~~L~Ls~N~l~~~ip~~~~~--~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 335 (722)
+..+ .+..+++|+.|+|++|++++..+.. +. ++|+.|+|++|++++..+..|..+++|+.|+|++|.+..
T Consensus 221 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 221 AIRPGSFQGLMHLQKLWMIQSQIQVIERNA-FDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp EECTTTTTTCTTCCEEECTTCCCCEECTTS-STTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred ccChhhhccCccCCEEECCCCceeEEChhh-hcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 6554 4677777777777777777443332 32 577777777777777777777788888888888887764
No 49
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=2.4e-27 Score=262.48 Aligned_cols=271 Identities=19% Similarity=0.164 Sum_probs=219.9
Q ss_pred CccccCccccCCCCCCEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEEcccCCCCCCCchh
Q 004953 94 LSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKS 173 (722)
Q Consensus 94 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 173 (722)
..+..+..++++++|++|++++|.+++. | .+..+++|++|+|++|++++. | ++.+++|++|++++|++++. +
T Consensus 30 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~-- 101 (457)
T 3bz5_A 30 MQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D-- 101 (457)
T ss_dssp CCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--
T ss_pred cCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--
Confidence 3344455788999999999999999965 5 699999999999999999975 4 89999999999999999975 3
Q ss_pred hcCcCCCCEEECCCccccCCCCcCCCCCCccceeecccCCCCCCCCccCCCCCCCcEEECcCCCCCCCCcchhccCCCCC
Q 004953 174 FANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKL 253 (722)
Q Consensus 174 ~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L 253 (722)
++++++|++|++++|.+++. + +..+++|++|++++|++++. .++.+++|++|++++|...+ .+ .+..+++|
T Consensus 102 ~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~-~~--~~~~l~~L 172 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKIT-KL--DVTPQTQL 172 (457)
T ss_dssp CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCC-CC--CCTTCTTC
T ss_pred cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccc-cc--ccccCCcC
Confidence 88999999999999999974 3 88999999999999999974 38899999999999996654 34 57889999
Q ss_pred cEEEccCCCCccCCCCCCCCCCccEEEccCCCCCccCCCccccCCcCEEEccCCcCcccCCccCCCCCCCCEEeCCCCcC
Q 004953 254 LKLSLRNCSLQGPMPDLSRIPNLGYLDLSSNQLNGSIPPGRLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSL 333 (722)
Q Consensus 254 ~~L~L~~N~l~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 333 (722)
+.|++++|++++. + +..+++|+.|++++|++++ ++ ....++|++|++++|++++ +| +..+++|+.|++++|++
T Consensus 173 ~~L~ls~n~l~~l-~-l~~l~~L~~L~l~~N~l~~-~~-l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l 245 (457)
T 3bz5_A 173 TTLDCSFNKITEL-D-VSQNKLLNRLNCDTNNITK-LD-LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPL 245 (457)
T ss_dssp CEEECCSSCCCCC-C-CTTCTTCCEEECCSSCCSC-CC-CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCC
T ss_pred CEEECCCCcccee-c-cccCCCCCEEECcCCcCCe-ec-cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcC
Confidence 9999999999984 3 8889999999999999995 44 2234799999999999998 45 88999999999999999
Q ss_pred cccCChhhhhhccC--CCCcccEEEccCCcCCCCCCCCCCCCceEEEccCCcCcCCC
Q 004953 334 SGSIPSSIWQSRTL--NATETFILDFQNNNLTNISGSFNIPPNVTVRLRGNPFCLNT 388 (722)
Q Consensus 334 ~~~ip~~~~~~~~l--~~~~L~~L~ls~N~l~~~~~~~~~~~l~~l~l~~N~l~~~~ 388 (722)
++..+..+..+..+ ...+|+.|++++|.+.+..+...+++++.|++++|++.+..
T Consensus 246 ~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l 302 (457)
T 3bz5_A 246 TELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLL 302 (457)
T ss_dssp SCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEE
T ss_pred CCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCccccee
Confidence 97654433222111 11244555555555544322235688999999999876654
No 50
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=8.8e-27 Score=257.77 Aligned_cols=261 Identities=25% Similarity=0.265 Sum_probs=168.8
Q ss_pred ccceeEEEcCCCCCccccCccccCCCCCCEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEE
Q 004953 81 YLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQ 160 (722)
Q Consensus 81 ~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 160 (722)
.++++.|++++|.+++ +|.. +++|++|++++|++++ +|.. .++|++|++++|++++ +| .++++++|++|+
T Consensus 90 ~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~ 159 (454)
T 1jl5_A 90 PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIID 159 (454)
T ss_dssp CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEE
T ss_pred cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEE
Confidence 3567777887777776 4432 3677777777777764 2221 1577777777777775 55 477777777777
Q ss_pred cccCCCCCCCchhhcCcCCCCEEECCCccccCCCCcCCCCCCccceeecccCCCCCCCCccCCCCCCCcEEECcCCCCCC
Q 004953 161 IDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEG 240 (722)
Q Consensus 161 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~ 240 (722)
+++|++++ +|..+ .+|++|++++|.+++ +| .+.++++|++|++++|++++ +|.. .++|++|++++|.++
T Consensus 160 l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~- 228 (454)
T 1jl5_A 160 VDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE- 228 (454)
T ss_dssp CCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-
T ss_pred CCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-
Confidence 77777774 44332 477777777777775 44 57777777777777777774 3332 246777777777776
Q ss_pred CCcchhccCCCCCcEEEccCCCCccCCCCCCCCCCccEEEccCCCCCccCCCccccCCcCEEEccCCcCcccCCccCCCC
Q 004953 241 TTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLDLSSNQLNGSIPPGRLSLNITTIKLSNNKLTGTIPSNFSGL 320 (722)
Q Consensus 241 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 320 (722)
.+|. +..+++|++|++++|++++... .+++|+.|++++|++++ +|.. .++|++|++++|++++... -.
T Consensus 229 -~lp~-~~~l~~L~~L~l~~N~l~~l~~---~~~~L~~L~l~~N~l~~-l~~~--~~~L~~L~ls~N~l~~l~~----~~ 296 (454)
T 1jl5_A 229 -ELPE-LQNLPFLTTIYADNNLLKTLPD---LPPSLEALNVRDNYLTD-LPEL--PQSLTFLDVSENIFSGLSE----LP 296 (454)
T ss_dssp -SCCC-CTTCTTCCEEECCSSCCSSCCS---CCTTCCEEECCSSCCSC-CCCC--CTTCCEEECCSSCCSEESC----CC
T ss_pred -cccc-cCCCCCCCEEECCCCcCCcccc---cccccCEEECCCCcccc-cCcc--cCcCCEEECcCCccCcccC----cC
Confidence 3553 6677777777777777775332 23677777777777773 5543 3567777777777775211 11
Q ss_pred CCCCEEeCCCCcCcccCChhhhhhccCCCCcccEEEccCCcCCCCCCCCCCCCceEEEccCCcCc
Q 004953 321 PRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGSFNIPPNVTVRLRGNPFC 385 (722)
Q Consensus 321 ~~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~ls~N~l~~~~~~~~~~~l~~l~l~~N~l~ 385 (722)
++|+.|++++|++++ ++.. .++|+.|++++|++++++.. ++++++|++++|.++
T Consensus 297 ~~L~~L~l~~N~l~~-i~~~--------~~~L~~L~Ls~N~l~~lp~~--~~~L~~L~L~~N~l~ 350 (454)
T 1jl5_A 297 PNLYYLNASSNEIRS-LCDL--------PPSLEELNVSNNKLIELPAL--PPRLERLIASFNHLA 350 (454)
T ss_dssp TTCCEEECCSSCCSE-ECCC--------CTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCS
T ss_pred CcCCEEECcCCcCCc-ccCC--------cCcCCEEECCCCcccccccc--CCcCCEEECCCCccc
Confidence 466677777776664 2210 13567777777777776543 466777777777765
No 51
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=3.7e-27 Score=272.50 Aligned_cols=153 Identities=18% Similarity=0.215 Sum_probs=137.8
Q ss_pred eEEEcCCCCCccccCccccCCCCCCEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEEcccC
Q 004953 85 RELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQN 164 (722)
Q Consensus 85 ~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N 164 (722)
++.+-++.+++ .+|..+. +++++|||++|+|++..|.+|.++++|++|+|++|+|++..|.+|.++++|++|+|++|
T Consensus 34 ~~~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N 110 (635)
T 4g8a_A 34 ITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 110 (635)
T ss_dssp TEEECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CEEECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC
Confidence 45677777887 4565553 47999999999999888889999999999999999999888889999999999999999
Q ss_pred CCCCCCchhhcCcCCCCEEECCCccccCCCCcCCCCCCccceeecccCCCCCC-CCccCCCCCCCcEEECcCCCCCC
Q 004953 165 YISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGY-LPPELSELPKLLILQLDNNNFEG 240 (722)
Q Consensus 165 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~-~~~~l~~l~~L~~L~l~~N~l~~ 240 (722)
++++..+..|.++++|++|++++|++++..+..|+++++|++|++++|.++.. .|..++.+++|++|++++|++++
T Consensus 111 ~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 111 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp CCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred cCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc
Confidence 99988888999999999999999999988888899999999999999999864 67888999999999999998764
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.6e-28 Score=263.19 Aligned_cols=266 Identities=20% Similarity=0.244 Sum_probs=225.2
Q ss_pred CCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEEcccCCCCCCCchhhcCcCCCCEEECCCccccCC
Q 004953 114 MWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQ 193 (722)
Q Consensus 114 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 193 (722)
+++.++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|++++..+..|.++++|++|++++|.+++.
T Consensus 39 ~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 115 (353)
T 2z80_A 39 SSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL 115 (353)
T ss_dssp CSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSC
T ss_pred CCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcC
Confidence 344555 4555543 5899999999999987777899999999999999999988889999999999999999999976
Q ss_pred CCcCCCCCCccceeecccCCCCCCCC-ccCCCCCCCcEEECcCCC-CCCCCcchhccCCCCCcEEEccCCCCccCCC-CC
Q 004953 194 IPPELSRLPSLVHMLLDNNNLTGYLP-PELSELPKLLILQLDNNN-FEGTTIPASYSNMSKLLKLSLRNCSLQGPMP-DL 270 (722)
Q Consensus 194 ~~~~l~~l~~L~~L~L~~N~l~~~~~-~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~l 270 (722)
.+..+.++++|++|++++|++++..+ ..+..+++|++|++++|+ ++. ..+..+..+++|++|++++|++++..+ .+
T Consensus 116 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 194 (353)
T 2z80_A 116 SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTK-IQRKDFAGLTFLEELEIDASDLQSYEPKSL 194 (353)
T ss_dssp CHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCE-ECTTTTTTCCEEEEEEEEETTCCEECTTTT
T ss_pred CHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccc-cCHHHccCCCCCCEEECCCCCcCccCHHHH
Confidence 66669999999999999999996544 578999999999999995 654 346789999999999999999998765 58
Q ss_pred CCCCCccEEEccCCCCCccCCCccc--cCCcCEEEccCCcCcccCCccCC---CCCCCCEEeCCCCcCcc----cCChhh
Q 004953 271 SRIPNLGYLDLSSNQLNGSIPPGRL--SLNITTIKLSNNKLTGTIPSNFS---GLPRLQRLFIANNSLSG----SIPSSI 341 (722)
Q Consensus 271 ~~l~~L~~L~Ls~N~l~~~ip~~~~--~~~L~~L~L~~N~l~~~~~~~~~---~l~~L~~L~L~~N~l~~----~ip~~~ 341 (722)
..+++|++|++++|+++ .+|...+ .++|+.|++++|.+++..+..+. ....++.+++++|.+++ .+|..+
T Consensus 195 ~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l 273 (353)
T 2z80_A 195 KSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLL 273 (353)
T ss_dssp TTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHH
T ss_pred hccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHH
Confidence 89999999999999997 6665433 36999999999999987665543 46778999999999987 466666
Q ss_pred hhhccCCCCcccEEEccCCcCCCCCCCC--CCCCceEEEccCCcCcCCCC
Q 004953 342 WQSRTLNATETFILDFQNNNLTNISGSF--NIPPNVTVRLRGNPFCLNTN 389 (722)
Q Consensus 342 ~~~~~l~~~~L~~L~ls~N~l~~~~~~~--~~~~l~~l~l~~N~l~~~~~ 389 (722)
.. +++|+.|++++|+++.++... .++++++|++++|+|.|+|+
T Consensus 274 ~~-----l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 274 NQ-----ISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HT-----CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hc-----ccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 54 478999999999999998764 78999999999999999985
No 53
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=2.3e-28 Score=253.83 Aligned_cols=252 Identities=18% Similarity=0.225 Sum_probs=147.2
Q ss_pred eEEEcCCCCCccccCccccCCCCCCEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEEcccC
Q 004953 85 RELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQN 164 (722)
Q Consensus 85 ~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N 164 (722)
+.++.++++++. +|..+ .++|++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|
T Consensus 14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 344555555542 23222 245666666666666555555666666666666666666555666666666666666666
Q ss_pred C-CCCCCchhhcCcCCCCEEECCCccccCCCCcCCCCCCccceeecccCCCCCCCCccCCCCCCCcEEECcCCCCCCCCc
Q 004953 165 Y-ISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTI 243 (722)
Q Consensus 165 ~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 243 (722)
. ++...+..|..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+++ ..
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~ 169 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VP 169 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE-EC
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc-cC
Confidence 5 555555666666666666666666665556666666666666666666665555556666666666666666653 12
Q ss_pred chhccCCCCCcEEEccCCCCccCCC-CCCCCCCccEEEccCCCCCccCCCccc--cCCcCEEEccCCcCcccCCccCCCC
Q 004953 244 PASYSNMSKLLKLSLRNCSLQGPMP-DLSRIPNLGYLDLSSNQLNGSIPPGRL--SLNITTIKLSNNKLTGTIPSNFSGL 320 (722)
Q Consensus 244 ~~~~~~l~~L~~L~L~~N~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~ip~~~~--~~~L~~L~L~~N~l~~~~~~~~~~l 320 (722)
+..+..+++|+.|++++|++++..+ .+..+++|+.|++++|.+++ ++...+ .++|+.|++++|.+....+.. .-.
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~ 247 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDNPWVCDCRAR-PLW 247 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCHHHHTTCTTCCEEECCSSCEECSGGGH-HHH
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc-CCHHHcccCcccCEEeccCCCccCCCCcH-HHH
Confidence 3345666666666666666665543 35666666666666666663 332212 246666677766665432211 111
Q ss_pred CCCCEEeCCCCcCcccCChhhh
Q 004953 321 PRLQRLFIANNSLSGSIPSSIW 342 (722)
Q Consensus 321 ~~L~~L~L~~N~l~~~ip~~~~ 342 (722)
..++.+..+.+.+.+..|..+.
T Consensus 248 ~~l~~~~~~~~~~~c~~p~~l~ 269 (285)
T 1ozn_A 248 AWLQKFRGSSSEVPCSLPQRLA 269 (285)
T ss_dssp HHHHHCCSEECCCBEEESGGGT
T ss_pred HHHHhcccccCccccCCchHhC
Confidence 2344455667777777777654
No 54
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=9.7e-30 Score=267.88 Aligned_cols=245 Identities=22% Similarity=0.258 Sum_probs=200.4
Q ss_pred cceeEEEcCCCCCccccCccccCCCCCCEEECCCCCC-ccCCCcccc-------CCCCCCEEeccCCcCCCCCCccC--C
Q 004953 82 LHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKI-SGSIPKEIG-------NIKSLELLLLNGNELTGSLPEEL--G 151 (722)
Q Consensus 82 ~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~p~~~~-------~l~~L~~L~L~~n~l~~~~p~~~--~ 151 (722)
.+++.|++++|.+ .+|..+... |++|+|++|.+ ...+|..+. ++++|++|+|++|++++.+|..+ .
T Consensus 43 ~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 43 RSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp EECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred CCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 4688888999998 677766654 88899999998 455666665 78999999999999998888876 8
Q ss_pred CCCCCcEEEcccCCCCCCCchhhcCc-----CCCCEEECCCccccCCCCcCCCCCCccceeecccCCCCCC--CCccC--
Q 004953 152 YLPKLDRIQIDQNYISGSLPKSFANL-----NKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGY--LPPEL-- 222 (722)
Q Consensus 152 ~l~~L~~L~L~~N~l~~~~p~~~~~l-----~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~--~~~~l-- 222 (722)
.+++|++|+|++|++++. |..+..+ ++|++|++++|++++..+..|..+++|++|++++|++.+. .+..+
T Consensus 119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 999999999999999987 8888877 8999999999999988888999999999999999998764 23344
Q ss_pred CCCCCCcEEECcCCCCCCC-Ccc-hhccCCCCCcEEEccCCCCccCCC--CCCCCCCccEEEccCCCCCccCCCccccCC
Q 004953 223 SELPKLLILQLDNNNFEGT-TIP-ASYSNMSKLLKLSLRNCSLQGPMP--DLSRIPNLGYLDLSSNQLNGSIPPGRLSLN 298 (722)
Q Consensus 223 ~~l~~L~~L~l~~N~l~~~-~~~-~~~~~l~~L~~L~L~~N~l~~~~~--~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~ 298 (722)
..+++|++|++++|.+++. .++ ..+..+++|+.|++++|++++..+ .+..+++|++|+|++|+++ .+|.... ++
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-~~ 275 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP-AK 275 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC-SE
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc-CC
Confidence 7889999999999999731 012 334678899999999999988663 4667889999999999998 7887644 78
Q ss_pred cCEEEccCCcCcccCCccCCCCCCCCEEeCCCCcCcc
Q 004953 299 ITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSG 335 (722)
Q Consensus 299 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 335 (722)
|++|+|++|+|++. |. +..+++|++|++++|++++
T Consensus 276 L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 276 LSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp EEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred ceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 88888888888876 54 7888888888888888874
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=3.1e-27 Score=261.10 Aligned_cols=248 Identities=20% Similarity=0.315 Sum_probs=186.6
Q ss_pred EEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEEcccCCCCCCCchhhcCcCCCCEEECCCcc
Q 004953 110 ILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNS 189 (722)
Q Consensus 110 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~ 189 (722)
.++.+++.++ .+|..+. ++++.|+|++|++++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|+
T Consensus 47 ~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 47 KVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp EEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred EEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 4455555555 4565553 789999999999998888999999999999999999998888899999999999999999
Q ss_pred ccCCCCcCCCCCCccceeecccCCCCCCCCccCCCCCCCcEEECcCCCCCCCCcchhccCCCCCcEEEccCCCCccCCCC
Q 004953 190 ISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMPD 269 (722)
Q Consensus 190 l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 269 (722)
++...+..|..+++|++|++++|+++...+..|..+++|+.|++++|+..+...+..|..+++|++|+|++|+++. +|.
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~ 202 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IPN 202 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CCC
T ss_pred CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-ccc
Confidence 9877777888889999999999988877777888888888888887544331122345566666666666665552 223
Q ss_pred CCCCCCccEEEccCCCCCccCCCccccCCcCEEEccCCcCcccCCccCCCCCCCCEEeCCCCcCcccCChhhhhhccCCC
Q 004953 270 LSRIPNLGYLDLSSNQLNGSIPPGRLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNA 349 (722)
Q Consensus 270 l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~l~~ 349 (722)
+..+ ++|++|+|++|++++..|..|..+++|+.|+|++|++++..|..+.. +
T Consensus 203 ~~~l-----------------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-----l 254 (440)
T 3zyj_A 203 LTPL-----------------------IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDN-----L 254 (440)
T ss_dssp CTTC-----------------------SSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTT-----C
T ss_pred cCCC-----------------------cccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcC-----C
Confidence 3333 45666666666666666667777777888888888777666655543 3
Q ss_pred CcccEEEccCCcCCCCCCCC--CCCCceEEEccCCcCcCCCC
Q 004953 350 TETFILDFQNNNLTNISGSF--NIPPNVTVRLRGNPFCLNTN 389 (722)
Q Consensus 350 ~~L~~L~ls~N~l~~~~~~~--~~~~l~~l~l~~N~l~~~~~ 389 (722)
++|+.|+|++|+|+++++.. .+++++.|++++|||.|+|.
T Consensus 255 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 255 QSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp TTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred CCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence 66778888888888776543 67889999999999999986
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=3.6e-27 Score=247.45 Aligned_cols=248 Identities=19% Similarity=0.213 Sum_probs=199.6
Q ss_pred CEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEEcccCCCCCC--CchhhcCcCCCCEEECC
Q 004953 109 TILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGS--LPKSFANLNKTRHFHMN 186 (722)
Q Consensus 109 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~p~~~~~l~~L~~L~L~ 186 (722)
+.++++++.++ .+|..+. ++|++|+|++|.++...+..|.++++|++|+|++|.++.. .+..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 56888888887 5665543 6899999999999865555678899999999999988743 36777788999999999
Q ss_pred CccccCCCCcCCCCCCccceeecccCCCCCCCC-ccCCCCCCCcEEECcCCCCCCCCcchhccCCCCCcEEEccCCCCcc
Q 004953 187 NNSISGQIPPELSRLPSLVHMLLDNNNLTGYLP-PELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQG 265 (722)
Q Consensus 187 ~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 265 (722)
+|.++. +|..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+++ ..+..+..+++|++|++++|.+++
T Consensus 87 ~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 87 FNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-AFNGIFNGLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp SCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEE-CSTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCc-cchhhcccCcCCCEEECCCCcccc
Confidence 998874 56668888999999999999887655 578888999999999998886 467778888999999999999886
Q ss_pred --CCCCCCCCCCccEEEccCCCCCccCCCccc-cCCcCEEEccCCcCcccCCccCCCCCCCCEEeCCCCcCcccCChhhh
Q 004953 266 --PMPDLSRIPNLGYLDLSSNQLNGSIPPGRL-SLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIW 342 (722)
Q Consensus 266 --~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~-~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ip~~~~ 342 (722)
....+..+++|++|++++|++++..|.... .++|++|++++|++++..+..|..+++|++|++++|++++..|..+.
T Consensus 165 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 244 (306)
T 2z66_A 165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244 (306)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHH
Confidence 334578889999999999999855554422 26899999999999988887888899999999999999988887765
Q ss_pred hhccCCCCcccEEEccCCcCCCC
Q 004953 343 QSRTLNATETFILDFQNNNLTNI 365 (722)
Q Consensus 343 ~~~~l~~~~L~~L~ls~N~l~~~ 365 (722)
.+ .++|+.|++++|.+++.
T Consensus 245 ~~----~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 245 HF----PSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CC----CTTCCEEECTTCCEECS
T ss_pred hh----hccCCEEEccCCCeecc
Confidence 43 13788999999998864
No 57
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=4.5e-27 Score=249.13 Aligned_cols=234 Identities=21% Similarity=0.326 Sum_probs=180.8
Q ss_pred CCCCCCEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEEcccCCCCCCCchhhcCcCCCCEE
Q 004953 104 RLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHF 183 (722)
Q Consensus 104 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 183 (722)
...+++.|+|++|.++ .+|..+.++++|++|+|++|.++ .+|..++++++|++|+|++|.++ .+|..+.++++|++|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 3578999999999998 77888888999999999999998 78888888999999999999888 678888888888888
Q ss_pred ECCCccccCCCCcCCCCCCccceeecccCCCCCCCCccCCCCCCCcEEECcCCCCCCCCcchhccCCCCCcEEEccCCCC
Q 004953 184 HMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSL 263 (722)
Q Consensus 184 ~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 263 (722)
++++|++.+.+|..+... ..+..+..+++|++|++++|.++ .+|..+..+++|++|+|++|++
T Consensus 156 ~L~~n~~~~~~p~~~~~~---------------~~~~~~~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~N~l 218 (328)
T 4fcg_A 156 SIRACPELTELPEPLAST---------------DASGEHQGLVNLQSLRLEWTGIR--SLPASIANLQNLKSLKIRNSPL 218 (328)
T ss_dssp EEEEETTCCCCCSCSEEE---------------C-CCCEEESTTCCEEEEEEECCC--CCCGGGGGCTTCCEEEEESSCC
T ss_pred ECCCCCCccccChhHhhc---------------cchhhhccCCCCCEEECcCCCcC--cchHhhcCCCCCCEEEccCCCC
Confidence 888887777777655421 11233556777777777777776 4666677777776666666666
Q ss_pred ccCCCCCCCCCCccEEEccCCCCCccCCCccccCCcCEEEccCCcCcccCCccCCCCCCCCEEeCCCCcCcccCChhhhh
Q 004953 264 QGPMPDLSRIPNLGYLDLSSNQLNGSIPPGRLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQ 343 (722)
Q Consensus 264 ~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ip~~~~~ 343 (722)
++..+.+..++ +|++|+|++|.+.+.+|..|..+++|++|+|++|++.+.+|..+..
T Consensus 219 ~~l~~~l~~l~-----------------------~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~ 275 (328)
T 4fcg_A 219 SALGPAIHHLP-----------------------KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR 275 (328)
T ss_dssp CCCCGGGGGCT-----------------------TCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGG
T ss_pred CcCchhhccCC-----------------------CCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhc
Confidence 64433344444 5555555555555667777899999999999999999999998875
Q ss_pred hccCCCCcccEEEccCCcCCC-CCCCC-CCCCceEEEccCCcCc
Q 004953 344 SRTLNATETFILDFQNNNLTN-ISGSF-NIPPNVTVRLRGNPFC 385 (722)
Q Consensus 344 ~~~l~~~~L~~L~ls~N~l~~-~~~~~-~~~~l~~l~l~~N~l~ 385 (722)
+ ++|+.|++++|++.+ +|..+ .+++++.+++..|.+.
T Consensus 276 l-----~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 276 L-----TQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp C-----TTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred C-----CCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 4 789999999999887 55556 8999999999887664
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1.1e-26 Score=241.26 Aligned_cols=238 Identities=19% Similarity=0.235 Sum_probs=151.4
Q ss_pred ccceeEEEcCCCCCccccCccccCCCCCCEEECCCCCCccCCCccccCCCCCCEEeccCCc-CCCCCCccCCCCCCCcEE
Q 004953 81 YLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNE-LTGSLPEELGYLPKLDRI 159 (722)
Q Consensus 81 ~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L 159 (722)
.++++.|++++|.+++..+..|..+++|++|++++|.+++..|..|.++++|++|++++|. +....|..+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 3456667777766666655666666677777777666666666666666677777777665 555556666666677777
Q ss_pred EcccCCCCCCCchhhcCcCCCCEEECCCccccCCCCcCCCCCCccceeecccCCCCCCCCccCCCCCCCcEEECcCCCCC
Q 004953 160 QIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFE 239 (722)
Q Consensus 160 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~ 239 (722)
++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|+.|++++|.++
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence 77777666666666666667777777777666555555666666777777777666555555666666777777776666
Q ss_pred CCCcchhccCCCCCcEEEccCCCCccCCCC-CCCCCCccEEEccCCCCCccCCCccccCCcCEEEccCCcCcccCCccCC
Q 004953 240 GTTIPASYSNMSKLLKLSLRNCSLQGPMPD-LSRIPNLGYLDLSSNQLNGSIPPGRLSLNITTIKLSNNKLTGTIPSNFS 318 (722)
Q Consensus 240 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~L~~L~L~~N~l~~~~~~~~~ 318 (722)
+ ..|..+..+++|+.|++++|++++..+. +..+++|++|++++|.+....+...+...++.+..+.+.+....|..+.
T Consensus 191 ~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~p~~l~ 269 (285)
T 1ozn_A 191 H-VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLA 269 (285)
T ss_dssp E-ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEESGGGT
T ss_pred c-cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCCchHhC
Confidence 5 3456666666677777777766654443 5666666777777766664443322223344445556666666665544
Q ss_pred C
Q 004953 319 G 319 (722)
Q Consensus 319 ~ 319 (722)
+
T Consensus 270 g 270 (285)
T 1ozn_A 270 G 270 (285)
T ss_dssp T
T ss_pred C
Confidence 3
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=8.2e-26 Score=250.57 Aligned_cols=253 Identities=22% Similarity=0.244 Sum_probs=205.3
Q ss_pred CCCCCCCCC--CceeecCCCCCC----CCccceeEEEcCCCCCccccCccccCCCCCCEEECCCCCCccCCCccccCCCC
Q 004953 58 NRGDPCTSN--WTGVLCFNTTMD----DGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKS 131 (722)
Q Consensus 58 ~~~~~C~~~--w~gv~C~~~~~~----~~~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 131 (722)
.+...|.|. |..+.|.+.... ....+++.|+|++|++++..+..|.++++|++|+|++|.+++..|..|.++++
T Consensus 45 ~Cp~~C~C~~~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 124 (452)
T 3zyi_A 45 NCPSVCSCSNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLAS 124 (452)
T ss_dssp CCCTTSEECSSSCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred CCCCCCEECCCCcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCccc
Confidence 344456554 678999765422 23458999999999999999999999999999999999999998999999999
Q ss_pred CCEEeccCCcCCCCCCccCCCCCCCcEEEcccCCCCCCCchhhcCcCCCCEEECCCc-cccCCCCcCCCCCCccceeecc
Q 004953 132 LELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNN-SISGQIPPELSRLPSLVHMLLD 210 (722)
Q Consensus 132 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~~~~l~~l~~L~~L~L~ 210 (722)
|++|+|++|+++...+..|..+++|++|+|++|+++...+..|.++++|++|++++| .+....+..|.++++|++|+++
T Consensus 125 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~ 204 (452)
T 3zyi_A 125 LNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLG 204 (452)
T ss_dssp CCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECT
T ss_pred CCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECC
Confidence 999999999999887788999999999999999999888889999999999999995 4554455578999999999999
Q ss_pred cCCCCCCCCccCCCCCCCcEEECcCCCCCCCCcchhccCCCCCcEEEccCCCCccCCCC-CCCCCCccEEEccCCCCCcc
Q 004953 211 NNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMPD-LSRIPNLGYLDLSSNQLNGS 289 (722)
Q Consensus 211 ~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-l~~l~~L~~L~Ls~N~l~~~ 289 (722)
+|++++. | .+..+++|+.|++++|.+++ ..|..|..+++|+.|+|++|++++..+. +..+++|+.|+|++|+++
T Consensus 205 ~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-- 279 (452)
T 3zyi_A 205 MCNIKDM-P-NLTPLVGLEELEMSGNHFPE-IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-- 279 (452)
T ss_dssp TSCCSSC-C-CCTTCTTCCEEECTTSCCSE-ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS--
T ss_pred CCccccc-c-cccccccccEEECcCCcCcc-cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC--
Confidence 9999854 3 57888899999999998886 3577788888888888888877765443 555555555555555554
Q ss_pred CCCccccCCcCEEEccCCcCcccCCccCCCCCCCCEEeCCCCcCccc
Q 004953 290 IPPGRLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGS 336 (722)
Q Consensus 290 ip~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 336 (722)
+..+..|..+++|+.|+|++|.+...
T Consensus 280 ---------------------~~~~~~~~~l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 280 ---------------------SLPHDLFTPLRYLVELHLHHNPWNCD 305 (452)
T ss_dssp ---------------------CCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred ---------------------ccChHHhccccCCCEEEccCCCcCCC
Confidence 44455677788888888888888753
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=8e-28 Score=253.81 Aligned_cols=264 Identities=22% Similarity=0.197 Sum_probs=213.3
Q ss_pred ceeEEEcCCCCCccccCccccCCCCCCEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEEcc
Q 004953 83 HLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQID 162 (722)
Q Consensus 83 ~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 162 (722)
+++.++++.+.+.......+..+++|++|+|++|.+++..|..|.++++|++|+|++|.+++..+ +..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 56777888888876666666778899999999999998888899999999999999999986554 8899999999999
Q ss_pred cCCCCCCCchhhcCcCCCCEEECCCccccCCCCcCCCCCCccceeecccCCCCCCCCccCCCCCCCcEEECcCCCCCCCC
Q 004953 163 QNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTT 242 (722)
Q Consensus 163 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~ 242 (722)
+|++++. ...++|++|++++|.+++..+.. +++|++|++++|++++..+..+..+++|++|++++|.+++.
T Consensus 89 ~n~l~~l-----~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~- 159 (317)
T 3o53_A 89 NNYVQEL-----LVGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV- 159 (317)
T ss_dssp SSEEEEE-----EECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE-
T ss_pred CCccccc-----cCCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc-
Confidence 9998743 24589999999999998765543 57899999999999988888888999999999999999863
Q ss_pred cchhc-cCCCCCcEEEccCCCCccCCCCCCCCCCccEEEccCCCCCccCCCcc-ccCCcCEEEccCCcCcccCCccCCCC
Q 004953 243 IPASY-SNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLDLSSNQLNGSIPPGR-LSLNITTIKLSNNKLTGTIPSNFSGL 320 (722)
Q Consensus 243 ~~~~~-~~l~~L~~L~L~~N~l~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~-~~~~L~~L~L~~N~l~~~~~~~~~~l 320 (722)
.+..+ ..+++|++|++++|.+++. +....+++|++|++++|++++ +|... ..++|++|+|++|++++ +|..+..+
T Consensus 160 ~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l 236 (317)
T 3o53_A 160 NFAELAASSDTLEHLNLQYNFIYDV-KGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFS 236 (317)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEE-ECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCC
T ss_pred cHHHHhhccCcCCEEECCCCcCccc-ccccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccc-hhhHhhcC
Confidence 45555 4789999999999999866 344458899999999999984 54442 23689999999999994 57778899
Q ss_pred CCCCEEeCCCCcCc-ccCChhhhhhccCCCCcccEEEcc-CCcCCCC
Q 004953 321 PRLQRLFIANNSLS-GSIPSSIWQSRTLNATETFILDFQ-NNNLTNI 365 (722)
Q Consensus 321 ~~L~~L~L~~N~l~-~~ip~~~~~~~~l~~~~L~~L~ls-~N~l~~~ 365 (722)
++|+.|++++|+++ +.+|..+..+ +.|+.|+++ .+.+++.
T Consensus 237 ~~L~~L~l~~N~~~~~~~~~~~~~~-----~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 237 QNLEHFDLRGNGFHCGTLRDFFSKN-----QRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp TTCCEEECTTCCCBHHHHHHHHHTC-----HHHHHHHHHHHHHHHSS
T ss_pred CCCCEEEccCCCccCcCHHHHHhcc-----ccceEEECCCchhccCC
Confidence 99999999999998 6666666543 567777777 3445553
No 61
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=6e-25 Score=250.67 Aligned_cols=259 Identities=27% Similarity=0.332 Sum_probs=219.7
Q ss_pred ceeEEEcCCCCCccccCccccCCCCCCEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEEcc
Q 004953 83 HLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQID 162 (722)
Q Consensus 83 ~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 162 (722)
.++.|++++++++ .+|..+. ++|++|+|++|.++ .+|. .+++|++|+|++|+++ .+|. .+++|++|+|+
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECc
Confidence 5899999999998 6677665 89999999999999 5565 5799999999999998 4555 78999999999
Q ss_pred cCCCCCCCchhhcCcCCCCEEECCCccccCCCCcCCCCCCccceeecccCCCCCCCCccCCCCCCCcEEECcCCCCCCCC
Q 004953 163 QNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTT 242 (722)
Q Consensus 163 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~ 242 (722)
+|.+++. |. .+++|+.|++++|.++. +|.. +++|++|++++|++++ +|. .+++|+.|++++|.+++
T Consensus 110 ~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-- 175 (622)
T 3g06_A 110 SNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-- 175 (622)
T ss_dssp SCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC--
T ss_pred CCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC--
Confidence 9999864 43 67899999999999986 4543 4899999999999985 343 35789999999999985
Q ss_pred cchhccCCCCCcEEEccCCCCccCCCCCCCCCCccEEEccCCCCCccCCCccccCCcCEEEccCCcCcccCCccCCCCCC
Q 004953 243 IPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLDLSSNQLNGSIPPGRLSLNITTIKLSNNKLTGTIPSNFSGLPR 322 (722)
Q Consensus 243 ~~~~~~~l~~L~~L~L~~N~l~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~ 322 (722)
+| ..+++|+.|++++|++++... .+++|+.|++++|.++ .+|.. .++|+.|+|++|+|++ +| ..+++
T Consensus 176 l~---~~~~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~-~l~~~--~~~L~~L~Ls~N~L~~-lp---~~l~~ 242 (622)
T 3g06_A 176 LP---MLPSGLQELSVSDNQLASLPT---LPSELYKLWAYNNRLT-SLPAL--PSGLKELIVSGNRLTS-LP---VLPSE 242 (622)
T ss_dssp CC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCS-SCCCC--CTTCCEEECCSSCCSC-CC---CCCTT
T ss_pred Cc---ccCCCCcEEECCCCCCCCCCC---ccchhhEEECcCCccc-ccCCC--CCCCCEEEccCCccCc-CC---CCCCc
Confidence 55 557899999999999997443 2478999999999999 67753 4789999999999997 44 56689
Q ss_pred CCEEeCCCCcCcccCChhhhhhccCCCCcccEEEccCCcCCCCCCCC-CCCCceEEEccCCcCcCCC
Q 004953 323 LQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGSF-NIPPNVTVRLRGNPFCLNT 388 (722)
Q Consensus 323 L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~ls~N~l~~~~~~~-~~~~l~~l~l~~N~l~~~~ 388 (722)
|+.|+|++|+|+ .+|.. .++|+.|+|++|+|+.+|+.+ .+++++.|++++|++++..
T Consensus 243 L~~L~Ls~N~L~-~lp~~--------~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~ 300 (622)
T 3g06_A 243 LKELMVSGNRLT-SLPML--------PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERT 300 (622)
T ss_dssp CCEEECCSSCCS-CCCCC--------CTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHHH
T ss_pred CcEEECCCCCCC-cCCcc--------cccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCcC
Confidence 999999999998 67761 368999999999999988777 8899999999999998754
No 62
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=5.3e-28 Score=254.59 Aligned_cols=249 Identities=19% Similarity=0.255 Sum_probs=154.9
Q ss_pred ccCCCCCCEEECCCCCCccCCCccccCCCCCCEEeccCCcCC-CCCCccCC-------CCCCCcEEEcccCCCCCCCchh
Q 004953 102 IGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELT-GSLPEELG-------YLPKLDRIQIDQNYISGSLPKS 173 (722)
Q Consensus 102 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~-~~~p~~~~-------~l~~L~~L~L~~N~l~~~~p~~ 173 (722)
++..++|++|++++|.+ .+|..+... |++|+|++|.++ ..+|..+. ++++|++|+|++|++++..|..
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 45567788888888888 667766554 888888888873 34555444 5777777777777777767765
Q ss_pred h--cCcCCCCEEECCCccccCCCCcCCCCC-----CccceeecccCCCCCCCCccCCCCCCCcEEECcCCCCCCC-Ccch
Q 004953 174 F--ANLNKTRHFHMNNNSISGQIPPELSRL-----PSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGT-TIPA 245 (722)
Q Consensus 174 ~--~~l~~L~~L~L~~N~l~~~~~~~l~~l-----~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~-~~~~ 245 (722)
+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|++++..+..++.+++|++|++++|++.+. ..+.
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence 5 6777777777777777765 6555555 6677777777777666666666666777777766665431 0122
Q ss_pred hc--cCCCCCcEEEccCCCCccCC--C-C-CCCCCCccEEEccCCCCCccCCCccccCCcCEEEccCCcCcccCC-ccCC
Q 004953 246 SY--SNMSKLLKLSLRNCSLQGPM--P-D-LSRIPNLGYLDLSSNQLNGSIPPGRLSLNITTIKLSNNKLTGTIP-SNFS 318 (722)
Q Consensus 246 ~~--~~l~~L~~L~L~~N~l~~~~--~-~-l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~L~~L~L~~N~l~~~~~-~~~~ 318 (722)
.+ ..+++|++|++++|++++.. + . +..++ +|++|++++|++++.+| ..+.
T Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~-----------------------~L~~L~Ls~N~l~~~~~~~~~~ 250 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV-----------------------QLQGLDLSHNSLRDAAGAPSCD 250 (312)
T ss_dssp HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC-----------------------CCSEEECTTSCCCSSCCCSCCC
T ss_pred HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCC-----------------------CCCEEECCCCcCCcccchhhhh
Confidence 22 44555555555555554211 0 1 12334 55555555555555443 3344
Q ss_pred CCCCCCEEeCCCCcCcccCChhhhhhccCCCCcccEEEccCCcCCCCCCCCCCCCceEEEccCCcCcC
Q 004953 319 GLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGSFNIPPNVTVRLRGNPFCL 386 (722)
Q Consensus 319 ~l~~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~ls~N~l~~~~~~~~~~~l~~l~l~~N~l~~ 386 (722)
.+++|++|+|++|+|+ .+|..+. ++|+.||+++|+|++++.-..++++++|++++|++++
T Consensus 251 ~l~~L~~L~Ls~N~l~-~ip~~~~-------~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 251 WPSQLNSLNLSFTGLK-QVPKGLP-------AKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCTTCCEEECTTSCCS-SCCSSCC-------SEEEEEECCSSCCCSCCCTTTSCEEEEEECTTCTTTC
T ss_pred hcCCCCEEECCCCccC-hhhhhcc-------CCceEEECCCCCCCCChhHhhCCCCCEEeccCCCCCC
Confidence 5666666777766666 5665442 4566777777777766442266677777777777754
No 63
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=5.5e-25 Score=226.49 Aligned_cols=215 Identities=21% Similarity=0.281 Sum_probs=172.2
Q ss_pred CCCCCCCceeecCCCCCCCCccceeEEEcCCCCCccccCccccCCCCCCEEECCCCCCccCCCccccCCCCCCEEeccCC
Q 004953 61 DPCTSNWTGVLCFNTTMDDGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGN 140 (722)
Q Consensus 61 ~~C~~~w~gv~C~~~~~~~~~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 140 (722)
+.| .|.|+.|... .+.+.+++++++++. +|..+. ++|++|+|++|++++..+..|.++++|++|+|++|
T Consensus 3 ~~C--~~~~~~C~c~------~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 71 (270)
T 2o6q_A 3 ALC--KKDGGVCSCN------NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN 71 (270)
T ss_dssp CCB--GGGTCSBEEE------TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS
T ss_pred ccC--CCCCCCCEeC------CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC
Confidence 455 7999999653 257889999999984 565554 68999999999999777778999999999999999
Q ss_pred cCCCCCCccCCCCCCCcEEEcccCCCCCCCchhhcCcCCCCEEECCCccccCCCCcCCCCCCccceeecccCCCCCCCCc
Q 004953 141 ELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPP 220 (722)
Q Consensus 141 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~ 220 (722)
.++...+..|.++++|++|++++|++++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|++++..+.
T Consensus 72 ~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 151 (270)
T 2o6q_A 72 KLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG 151 (270)
T ss_dssp CCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred ccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHh
Confidence 99876666778899999999999999887777888899999999999998887777888888888888888888876666
Q ss_pred cCCCCCCCcEEECcCCCCCCCCcchhccCCCCCcEEEccCCCCccCCCC-CCCCCCccEEEccCCCCC
Q 004953 221 ELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMPD-LSRIPNLGYLDLSSNQLN 287 (722)
Q Consensus 221 ~l~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-l~~l~~L~~L~Ls~N~l~ 287 (722)
.|..+++|+.|++++|.+++ ..+..+..+++|+.|+|++|++++..+. +..+++|+.|++++|.+.
T Consensus 152 ~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 152 VFDKLTSLKELRLYNNQLKR-VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred HccCCcccceeEecCCcCcE-eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 77888888888888888875 2444577777777777777777765543 566667777777777655
No 64
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=5.4e-25 Score=227.31 Aligned_cols=229 Identities=20% Similarity=0.251 Sum_probs=148.1
Q ss_pred EEEcCCCCCccccCccccCCCCCCEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEEcccCC
Q 004953 86 ELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNY 165 (722)
Q Consensus 86 ~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~ 165 (722)
.++..+.++. .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++++|.
T Consensus 11 ~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 3455555554 3444443 467888888888877666677778888888888887776666677777777777777777
Q ss_pred CCCCCchhhcCcCCCCEEECCCccccCCCCcCCCCCCccceeecccCCCCCC-CCccCCCCCCCcEEECcCCCCCCCCcc
Q 004953 166 ISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGY-LPPELSELPKLLILQLDNNNFEGTTIP 244 (722)
Q Consensus 166 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~-~~~~l~~l~~L~~L~l~~N~l~~~~~~ 244 (722)
+++..+..|.++++|++|++++|.+.+..+..+..+++|++|++++|++++. +|..+..+++|++|++++|++++ ..+
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~-~~~ 166 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYC 166 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE-ECG
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc-CCH
Confidence 7766666677777777777777766655554555666666666666655542 34555555555555555555543 122
Q ss_pred hhccCCCCCcEEEccCCCCccCCCCCCCCCCcc-EEEccCCCCCccCCCccccCCcCEEEccCCcCcccCCccCCCCCCC
Q 004953 245 ASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLG-YLDLSSNQLNGSIPPGRLSLNITTIKLSNNKLTGTIPSNFSGLPRL 323 (722)
Q Consensus 245 ~~~~~l~~L~~L~L~~N~l~~~~~~l~~l~~L~-~L~Ls~N~l~~~ip~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L 323 (722)
..+..+++|+ .|. .|++++|++++..+......+|++|++++|++++..+..|..+++|
T Consensus 167 ~~~~~l~~L~--------------------~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 226 (276)
T 2z62_A 167 TDLRVLHQMP--------------------LLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSL 226 (276)
T ss_dssp GGGHHHHTCT--------------------TCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSC
T ss_pred HHhhhhhhcc--------------------ccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccc
Confidence 3333333222 222 6677777776333332222478888888888887777778889999
Q ss_pred CEEeCCCCcCcccCC
Q 004953 324 QRLFIANNSLSGSIP 338 (722)
Q Consensus 324 ~~L~L~~N~l~~~ip 338 (722)
+.|++++|++++..|
T Consensus 227 ~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 227 QKIWLHTNPWDCSCP 241 (276)
T ss_dssp CEEECCSSCBCCCTT
T ss_pred cEEEccCCcccccCC
Confidence 999999999987665
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=2.8e-26 Score=256.21 Aligned_cols=226 Identities=24% Similarity=0.222 Sum_probs=166.7
Q ss_pred CCCCCCEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEEcccCCCCCCCchhhcCcCCCCEE
Q 004953 104 RLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHF 183 (722)
Q Consensus 104 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 183 (722)
.+++|++|+|++|.+++..|..|..+++|++|+|++|.+++..| +..+++|++|+|++|.+++.. ..++|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEE
Confidence 34478888888888887777788888888888888888876554 778888888888888776432 23778888
Q ss_pred ECCCccccCCCCcCCCCCCccceeecccCCCCCCCCccCCCCCCCcEEECcCCCCCCCCcchhcc-CCCCCcEEEccCCC
Q 004953 184 HMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYS-NMSKLLKLSLRNCS 262 (722)
Q Consensus 184 ~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~-~l~~L~~L~L~~N~ 262 (722)
++++|.+++..+. .+++|++|++++|.+++..|..++.+++|+.|++++|.+++ ..|..+. .+++|+.|+|++|.
T Consensus 105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT-VNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCE-EEGGGGGGGTTTCCEEECTTSC
T ss_pred ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCC-cChHHHhhhCCcccEEecCCCc
Confidence 8888888766544 34678888888888887777778888888888888888876 3566554 67888888888888
Q ss_pred CccCCCCCCCCCCccEEEccCCCCCccCCCccccCCcCEEEccCCcCcccCCccCCCCCCCCEEeCCCCcCc-ccCChhh
Q 004953 263 LQGPMPDLSRIPNLGYLDLSSNQLNGSIPPGRLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLS-GSIPSSI 341 (722)
Q Consensus 263 l~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~ip~~~ 341 (722)
+++. +....+++|+.|+|++|.+++..|.....++|+.|+|++|.+++ +|..+..+++|+.|++++|.++ +.+|..+
T Consensus 181 l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~ 258 (487)
T 3oja_A 181 IYDV-KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (487)
T ss_dssp CCEE-ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred cccc-cccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence 8765 33445778888888888888533332223678888888888885 5566777888888888888887 4555544
Q ss_pred h
Q 004953 342 W 342 (722)
Q Consensus 342 ~ 342 (722)
.
T Consensus 259 ~ 259 (487)
T 3oja_A 259 S 259 (487)
T ss_dssp T
T ss_pred H
Confidence 3
No 66
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=5.9e-25 Score=226.99 Aligned_cols=229 Identities=20% Similarity=0.235 Sum_probs=188.8
Q ss_pred CCCCCCCc--eeecCCCCC---CC-CccceeEEEcCCCCCccccCccccCCCCCCEEECCCCCCccCCCccccCCCCCCE
Q 004953 61 DPCTSNWT--GVLCFNTTM---DD-GYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLEL 134 (722)
Q Consensus 61 ~~C~~~w~--gv~C~~~~~---~~-~~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 134 (722)
+||.|.+. .+.|.+... +. ..++++.|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++
T Consensus 1 ~~C~~~~~~~~~~c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 80 (276)
T 2z62_A 1 EPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLST 80 (276)
T ss_dssp CCSEEEETTTEEECTTSCCSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred CCceeccCCceEEecCCCccccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCE
Confidence 46655444 577865442 22 2346999999999999888889999999999999999999888889999999999
Q ss_pred EeccCCcCCCCCCccCCCCCCCcEEEcccCCCCCCCchhhcCcCCCCEEECCCccccCC-CCcCCCCCCccceeecccCC
Q 004953 135 LLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQ-IPPELSRLPSLVHMLLDNNN 213 (722)
Q Consensus 135 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~~~~l~~l~~L~~L~L~~N~ 213 (722)
|+|++|.+++..+..|.++++|++|++++|.+++..+..+.++++|++|++++|.+++. +|..+..+++|++|++++|+
T Consensus 81 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~ 160 (276)
T 2z62_A 81 LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160 (276)
T ss_dssp EECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred EECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC
Confidence 99999999988889999999999999999999988777899999999999999999874 58899999999999999999
Q ss_pred CCCCCCccCCCCCCCc----EEECcCCCCCCCCcchhccCCCCCcEEEccCCCCccCCCC-CCCCCCccEEEccCCCCCc
Q 004953 214 LTGYLPPELSELPKLL----ILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMPD-LSRIPNLGYLDLSSNQLNG 288 (722)
Q Consensus 214 l~~~~~~~l~~l~~L~----~L~l~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-l~~l~~L~~L~Ls~N~l~~ 288 (722)
+++..+..+..+++|+ .|++++|.+++ ++.......+|+.|++++|++++..+. +..+++|+.|++++|++.+
T Consensus 161 l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~--~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF--IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CCEECGGGGHHHHTCTTCCEEEECCSSCCCE--ECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred CCcCCHHHhhhhhhccccceeeecCCCcccc--cCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 9988777777766666 88888988874 444444445788888888887765554 5667777777777777765
Q ss_pred cCC
Q 004953 289 SIP 291 (722)
Q Consensus 289 ~ip 291 (722)
..|
T Consensus 239 ~c~ 241 (276)
T 2z62_A 239 SCP 241 (276)
T ss_dssp CTT
T ss_pred cCC
Confidence 443
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=7.8e-27 Score=246.22 Aligned_cols=245 Identities=21% Similarity=0.220 Sum_probs=213.1
Q ss_pred ccceeEEEcCCCCCccccCccccCCCCCCEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEE
Q 004953 81 YLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQ 160 (722)
Q Consensus 81 ~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 160 (722)
+++++.|++++|.+++..|..|..+++|++|+|++|.+++..+ |..+++|++|++++|.+++.. ..++|++|+
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~ 105 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLH 105 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEE
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEEE
Confidence 4589999999999999888899999999999999999987655 999999999999999998433 348999999
Q ss_pred cccCCCCCCCchhhcCcCCCCEEECCCccccCCCCcCCCCCCccceeecccCCCCCCCCccCC-CCCCCcEEECcCCCCC
Q 004953 161 IDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELS-ELPKLLILQLDNNNFE 239 (722)
Q Consensus 161 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~-~l~~L~~L~l~~N~l~ 239 (722)
+++|++++..+. .+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+. .+++|++|++++|.++
T Consensus 106 l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 182 (317)
T 3o53_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (317)
T ss_dssp CCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence 999999876554 367899999999999988888999999999999999999987777764 7899999999999998
Q ss_pred CCCcchhccCCCCCcEEEccCCCCccCCCCCCCCCCccEEEccCCCCCccCCCccc-cCCcCEEEccCCcCc-ccCCccC
Q 004953 240 GTTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLDLSSNQLNGSIPPGRL-SLNITTIKLSNNKLT-GTIPSNF 317 (722)
Q Consensus 240 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~-~~~L~~L~L~~N~l~-~~~~~~~ 317 (722)
+ ++ ....+++|++|+|++|++++..+.+..+++|++|++++|+++ .+|.... .++|+.|++++|.+. +.++..+
T Consensus 183 ~--~~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~ 258 (317)
T 3o53_A 183 D--VK-GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (317)
T ss_dssp E--EE-CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHH
T ss_pred c--cc-cccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHH
Confidence 5 33 334589999999999999988777889999999999999999 6776532 369999999999999 7888899
Q ss_pred CCCCCCCEEeCCC-CcCcccCCh
Q 004953 318 SGLPRLQRLFIAN-NSLSGSIPS 339 (722)
Q Consensus 318 ~~l~~L~~L~L~~-N~l~~~ip~ 339 (722)
..+++|+.|++++ +.++|..|.
T Consensus 259 ~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 259 SKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp HTCHHHHHHHHHHHHHHHSSSSC
T ss_pred hccccceEEECCCchhccCCchh
Confidence 9999999999984 456665543
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=5e-26 Score=254.11 Aligned_cols=236 Identities=21% Similarity=0.216 Sum_probs=208.8
Q ss_pred CccceeEEEcCCCCCccccCccccCCCCCCEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEE
Q 004953 80 GYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRI 159 (722)
Q Consensus 80 ~~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 159 (722)
.+++|+.|+|++|.+++..|..|..+++|++|+|++|.+++..| |..+++|++|+|++|.+++..+ .++|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEE
Confidence 34589999999999999888899999999999999999997666 9999999999999999985432 3899999
Q ss_pred EcccCCCCCCCchhhcCcCCCCEEECCCccccCCCCcCCCCCCccceeecccCCCCCCCCccCC-CCCCCcEEECcCCCC
Q 004953 160 QIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELS-ELPKLLILQLDNNNF 238 (722)
Q Consensus 160 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~-~l~~L~~L~l~~N~l 238 (722)
++++|.+++..+. .+++|+.|++++|.+++..|..+..+++|++|++++|.+++..|..+. .+++|+.|++++|.+
T Consensus 105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 9999999976654 468899999999999998899999999999999999999998888886 799999999999999
Q ss_pred CCCCcchhccCCCCCcEEEccCCCCccCCCCCCCCCCccEEEccCCCCCccCCCcc-ccCCcCEEEccCCcCc-ccCCcc
Q 004953 239 EGTTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLDLSSNQLNGSIPPGR-LSLNITTIKLSNNKLT-GTIPSN 316 (722)
Q Consensus 239 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~-~~~~L~~L~L~~N~l~-~~~~~~ 316 (722)
++ ++ ....+++|+.|+|++|.+++.++.+..+++|+.|++++|.+++ +|... ..++|+.|++++|.+. +.+|..
T Consensus 182 ~~--~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~ 257 (487)
T 3oja_A 182 YD--VK-GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDF 257 (487)
T ss_dssp CE--EE-CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHH
T ss_pred cc--cc-ccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHH
Confidence 85 33 3446999999999999999988888899999999999999994 66653 2369999999999998 777888
Q ss_pred CCCCCCCCEEeCC
Q 004953 317 FSGLPRLQRLFIA 329 (722)
Q Consensus 317 ~~~l~~L~~L~L~ 329 (722)
+..++.|+.++++
T Consensus 258 ~~~l~~L~~l~~~ 270 (487)
T 3oja_A 258 FSKNQRVQTVAKQ 270 (487)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HHhCCCCcEEecc
Confidence 8888888888775
No 69
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.92 E-value=8.5e-28 Score=267.19 Aligned_cols=305 Identities=17% Similarity=0.152 Sum_probs=192.9
Q ss_pred cceeEEEcCCCCCccccCccc-cCCC----CCCEEECCCCCCcc----CCCccccCCCCCCEEeccCCcCCCCCCcc---
Q 004953 82 LHLRELQLLNLNLSGNLSPEI-GRLS----YLTILDFMWNKISG----SIPKEIGNIKSLELLLLNGNELTGSLPEE--- 149 (722)
Q Consensus 82 ~~l~~L~L~~~~l~~~~~~~~-~~l~----~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~p~~--- 149 (722)
++++.|++++|.+++..+..+ ..++ +|++|+|++|.++. .++..+..+++|++|+|++|.++...+..
T Consensus 56 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 135 (461)
T 1z7x_W 56 PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCE 135 (461)
T ss_dssp TTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred CCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHH
Confidence 467777777777765444333 2344 57777777777763 44666777777777777777776432222
Q ss_pred --CCCCCCCcEEEcccCCCCCCC----chhhcCcCCCCEEECCCccccCCCCcCCC-----CCCccceeecccCCCCCC-
Q 004953 150 --LGYLPKLDRIQIDQNYISGSL----PKSFANLNKTRHFHMNNNSISGQIPPELS-----RLPSLVHMLLDNNNLTGY- 217 (722)
Q Consensus 150 --~~~l~~L~~L~L~~N~l~~~~----p~~~~~l~~L~~L~L~~N~l~~~~~~~l~-----~l~~L~~L~L~~N~l~~~- 217 (722)
....++|++|++++|++++.. +..+..+++|++|++++|.++...+..+. ..++|++|++++|.+++.
T Consensus 136 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 215 (461)
T 1z7x_W 136 GLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDN 215 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTH
T ss_pred HHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHH
Confidence 223556777777777776533 44556667777777777777643333332 245777778877777753
Q ss_pred ---CCccCCCCCCCcEEECcCCCCCCCCc----chhccCCCCCcEEEccCCCCccC-----CCCCCCCCCccEEEccCCC
Q 004953 218 ---LPPELSELPKLLILQLDNNNFEGTTI----PASYSNMSKLLKLSLRNCSLQGP-----MPDLSRIPNLGYLDLSSNQ 285 (722)
Q Consensus 218 ---~~~~l~~l~~L~~L~l~~N~l~~~~~----~~~~~~l~~L~~L~L~~N~l~~~-----~~~l~~l~~L~~L~Ls~N~ 285 (722)
++..+..+++|++|++++|.+++... +..+..+++|++|++++|.+++. ...+..+++|++|++++|.
T Consensus 216 ~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 295 (461)
T 1z7x_W 216 CRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE 295 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC
T ss_pred HHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC
Confidence 35556667777888888777753111 22233567788888888877652 2234556778888888887
Q ss_pred CCccCCCcc------ccCCcCEEEccCCcCccc----CCccCCCCCCCCEEeCCCCcCcccCChhhhhhccCCCCcccEE
Q 004953 286 LNGSIPPGR------LSLNITTIKLSNNKLTGT----IPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFIL 355 (722)
Q Consensus 286 l~~~ip~~~------~~~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L 355 (722)
+++..+... ..++|++|++++|.+++. ++..+..+++|++|++++|++++..+..+...-.-..++|+.|
T Consensus 296 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L 375 (461)
T 1z7x_W 296 LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVL 375 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred CchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEE
Confidence 763322111 014788888888887765 4455666778888888888877665555543211123577888
Q ss_pred EccCCcCCC-----CCCCC-CCCCceEEEccCCcCcC
Q 004953 356 DFQNNNLTN-----ISGSF-NIPPNVTVRLRGNPFCL 386 (722)
Q Consensus 356 ~ls~N~l~~-----~~~~~-~~~~l~~l~l~~N~l~~ 386 (722)
++++|++++ ++..+ ..+++++|++++|+++.
T Consensus 376 ~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 376 WLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp ECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred ECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 888888773 33333 56777888888887753
No 70
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=4e-24 Score=220.28 Aligned_cols=198 Identities=18% Similarity=0.250 Sum_probs=130.2
Q ss_pred ceeEEEcCCCCCccccCccccCCCCCCEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEEcc
Q 004953 83 HLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQID 162 (722)
Q Consensus 83 ~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 162 (722)
++..+++..+.+.+.. .+..+++|+.|++++|.++. + ..+..+++|++|++++|.+++. ..+..+++|++|+++
T Consensus 20 ~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~ 93 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILT 93 (272)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECT
T ss_pred HHHHHHhcCccccccc--ccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECC
Confidence 4444555555555432 34566777888887777763 2 3467777778888877777752 356777777777777
Q ss_pred cCCCCCCCchhhcCcCCCCEEECCCccccCCCCcCCCCCCccceeecccCCCCCCCCccCCCCCCCcEEECcCCCCCCCC
Q 004953 163 QNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTT 242 (722)
Q Consensus 163 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~ 242 (722)
+|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|+.|++++|++++ .
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~ 172 (272)
T 3rfs_A 94 GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-L 172 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-C
T ss_pred CCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc-c
Confidence 777776666667777777777777777776666666777777777777777776666666677777777777777764 2
Q ss_pred cchhccCCCCCcEEEccCCCCccCCCC-CCCCCCccEEEccCCCCC
Q 004953 243 IPASYSNMSKLLKLSLRNCSLQGPMPD-LSRIPNLGYLDLSSNQLN 287 (722)
Q Consensus 243 ~~~~~~~l~~L~~L~L~~N~l~~~~~~-l~~l~~L~~L~Ls~N~l~ 287 (722)
.+..+..+++|+.|++++|++++..+. +..+++|++|++++|.+.
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 173 PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc
Confidence 344456666666666666666654443 455555555555555544
No 71
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.91 E-value=1.1e-23 Score=221.49 Aligned_cols=224 Identities=17% Similarity=0.184 Sum_probs=179.1
Q ss_pred CCCCEEECCCCCCccCCCc---cccCCCCCCEEeccCCcCCCCCCccC--CCCCCCcEEEcccCCCCCCCc----hhhcC
Q 004953 106 SYLTILDFMWNKISGSIPK---EIGNIKSLELLLLNGNELTGSLPEEL--GYLPKLDRIQIDQNYISGSLP----KSFAN 176 (722)
Q Consensus 106 ~~L~~L~Ls~n~l~~~~p~---~~~~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p----~~~~~ 176 (722)
..++.|++.++.++...-. .+..+++|++|++++|.+++..|..+ ..+++|++|+|++|.+++..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 4578899988887632111 12345779999999999999999888 899999999999999987655 45567
Q ss_pred cCCCCEEECCCccccCCCCcCCCCCCccceeecccCCCCCC----CCccCCCCCCCcEEECcCCCCCCCCcch----hcc
Q 004953 177 LNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGY----LPPELSELPKLLILQLDNNNFEGTTIPA----SYS 248 (722)
Q Consensus 177 l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~----~~~~l~~l~~L~~L~l~~N~l~~~~~~~----~~~ 248 (722)
+++|++|++++|.+++..+..|..+++|++|++++|++.+. .+..+..+++|++|++++|+++. ++. .+.
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~ 221 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET--PTGVCAALAA 221 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC--HHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc--hHHHHHHHHh
Confidence 99999999999999988888999999999999999998642 12334788999999999999973 444 357
Q ss_pred CCCCCcEEEccCCCCccCCC-CCCCC---CCccEEEccCCCCCccCCCccccCCcCEEEccCCcCcccCCccCCCCCCCC
Q 004953 249 NMSKLLKLSLRNCSLQGPMP-DLSRI---PNLGYLDLSSNQLNGSIPPGRLSLNITTIKLSNNKLTGTIPSNFSGLPRLQ 324 (722)
Q Consensus 249 ~l~~L~~L~L~~N~l~~~~~-~l~~l---~~L~~L~Ls~N~l~~~ip~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 324 (722)
.+++|++|+|++|++++..| .+..+ ++|++|+|++|+++ .+|... .++|++|+|++|+|++. |. +..+++|+
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~-~~~L~~L~Ls~N~l~~~-~~-~~~l~~L~ 297 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGL-PAKLRVLDLSSNRLNRA-PQ-PDELPEVD 297 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCC-CSCCSCEECCSCCCCSC-CC-TTSCCCCS
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhh-cCCCCEEECCCCcCCCC-ch-hhhCCCcc
Confidence 78999999999999998744 34444 79999999999998 777764 47888888888888865 32 67778888
Q ss_pred EEeCCCCcCcc
Q 004953 325 RLFIANNSLSG 335 (722)
Q Consensus 325 ~L~L~~N~l~~ 335 (722)
.|+|++|+++.
T Consensus 298 ~L~L~~N~l~~ 308 (310)
T 4glp_A 298 NLTLDGNPFLV 308 (310)
T ss_dssp CEECSSTTTSC
T ss_pred EEECcCCCCCC
Confidence 88888888864
No 72
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=1.5e-22 Score=230.93 Aligned_cols=241 Identities=26% Similarity=0.313 Sum_probs=201.4
Q ss_pred ccceeEEEcCCCCCccccCccccCCCCCCEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEE
Q 004953 81 YLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQ 160 (722)
Q Consensus 81 ~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 160 (722)
.++++.|++++|.++. +|. .+++|++|+|++|+++ .+|. .+++|++|+|++|.+++ +|. .+++|+.|+
T Consensus 60 ~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~ 127 (622)
T 3g06_A 60 PAHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLW 127 (622)
T ss_dssp CTTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEE
T ss_pred CCCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEE
Confidence 3689999999999984 554 5789999999999998 4565 78999999999999995 444 678999999
Q ss_pred cccCCCCCCCchhhcCcCCCCEEECCCccccCCCCcCCCCCCccceeecccCCCCCCCCccCCCCCCCcEEECcCCCCCC
Q 004953 161 IDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEG 240 (722)
Q Consensus 161 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~ 240 (722)
+++|++++ +|.. +++|++|++++|.+++. |. .+++|+.|++++|++++ +| ..+++|+.|++++|.+++
T Consensus 128 L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~ 195 (622)
T 3g06_A 128 IFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS 195 (622)
T ss_dssp CCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC
T ss_pred CCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC
Confidence 99999986 4543 58999999999999853 43 34789999999999996 44 457899999999999985
Q ss_pred CCcchhccCCCCCcEEEccCCCCccCCCCCCCCCCccEEEccCCCCCccCCCccccCCcCEEEccCCcCcccCCccCCCC
Q 004953 241 TTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLDLSSNQLNGSIPPGRLSLNITTIKLSNNKLTGTIPSNFSGL 320 (722)
Q Consensus 241 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 320 (722)
+|.. +++|+.|++++|.++.... .+++|+.|++++|+++ .+|. ..++|+.|+|++|+|+. +|. .+
T Consensus 196 --l~~~---~~~L~~L~L~~N~l~~l~~---~~~~L~~L~Ls~N~L~-~lp~--~l~~L~~L~Ls~N~L~~-lp~---~~ 260 (622)
T 3g06_A 196 --LPTL---PSELYKLWAYNNRLTSLPA---LPSGLKELIVSGNRLT-SLPV--LPSELKELMVSGNRLTS-LPM---LP 260 (622)
T ss_dssp --CCCC---CTTCCEEECCSSCCSSCCC---CCTTCCEEECCSSCCS-CCCC--CCTTCCEEECCSSCCSC-CCC---CC
T ss_pred --CCCc---cchhhEEECcCCcccccCC---CCCCCCEEEccCCccC-cCCC--CCCcCcEEECCCCCCCc-CCc---cc
Confidence 5543 5789999999999996443 3478999999999999 5773 45799999999999995 444 67
Q ss_pred CCCCEEeCCCCcCcccCChhhhhhccCCCCcccEEEccCCcCCCCC
Q 004953 321 PRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNIS 366 (722)
Q Consensus 321 ~~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~ls~N~l~~~~ 366 (722)
++|+.|+|++|+|+ .+|..+..+ ++|+.|+|++|.+++..
T Consensus 261 ~~L~~L~Ls~N~L~-~lp~~l~~l-----~~L~~L~L~~N~l~~~~ 300 (622)
T 3g06_A 261 SGLLSLSVYRNQLT-RLPESLIHL-----SSETTVNLEGNPLSERT 300 (622)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGS-----CTTCEEECCSCCCCHHH
T ss_pred ccCcEEeCCCCCCC-cCCHHHhhc-----cccCEEEecCCCCCCcC
Confidence 89999999999999 889887654 78999999999999753
No 73
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.90 E-value=8.2e-27 Score=259.21 Aligned_cols=303 Identities=17% Similarity=0.174 Sum_probs=140.6
Q ss_pred cceeEEEcCCCCCccccCcc-ccCCCCCCEEECCCCCCcc----CCCccccCCCCCCEEeccCCcCCCCCCccC-CCCC-
Q 004953 82 LHLRELQLLNLNLSGNLSPE-IGRLSYLTILDFMWNKISG----SIPKEIGNIKSLELLLLNGNELTGSLPEEL-GYLP- 154 (722)
Q Consensus 82 ~~l~~L~L~~~~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~- 154 (722)
++++.|+++++.++...... +..+++|++|+|++|.++. .++..+..+++|++|+|++|.+....+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 34555555555554433222 4455555555555555543 223444555555555555555543222111 1122
Q ss_pred ---CCcEEEcccCCCCC----CCchhhcCcCCCCEEECCCccccCCCCcC-----CCCCCccceeecccCCCCCCC----
Q 004953 155 ---KLDRIQIDQNYISG----SLPKSFANLNKTRHFHMNNNSISGQIPPE-----LSRLPSLVHMLLDNNNLTGYL---- 218 (722)
Q Consensus 155 ---~L~~L~L~~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~~~~-----l~~l~~L~~L~L~~N~l~~~~---- 218 (722)
+|++|+|++|+++. .++..+..+++|++|++++|.++...+.. ....++|++|++++|++++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 45555555555552 23455555555555555555554322211 112345555555555555422
Q ss_pred CccCCCCCCCcEEECcCCCCCCCCcchhcc-----CCCCCcEEEccCCCCccCC----C-CCCCCCCccEEEccCCCCCc
Q 004953 219 PPELSELPKLLILQLDNNNFEGTTIPASYS-----NMSKLLKLSLRNCSLQGPM----P-DLSRIPNLGYLDLSSNQLNG 288 (722)
Q Consensus 219 ~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~-----~l~~L~~L~L~~N~l~~~~----~-~l~~l~~L~~L~Ls~N~l~~ 288 (722)
+..+..+++|++|++++|.++. ..+..+. ..++|+.|++++|.+++.. + .+..+++|++|++++|.+++
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~-~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINE-AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHH-HHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHhhCCCCCEEECcCCCcch-HHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 3333444555555555555542 1111111 2345555555555555421 1 23344555555555555542
Q ss_pred cC----CCccc--cCCcCEEEccCCcCccc----CCccCCCCCCCCEEeCCCCcCcccCChhhhhhccCCCCcccEEEcc
Q 004953 289 SI----PPGRL--SLNITTIKLSNNKLTGT----IPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQ 358 (722)
Q Consensus 289 ~i----p~~~~--~~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~ls 358 (722)
.. ..... .++|++|++++|.+++. ++..+..+++|++|++++|++++..+..+...-....++|+.|+++
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 321 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence 21 01111 23555555555555543 3444444555555555555555443333333211122355555555
Q ss_pred CCcCCCCC-----CCC-CCCCceEEEccCCcCc
Q 004953 359 NNNLTNIS-----GSF-NIPPNVTVRLRGNPFC 385 (722)
Q Consensus 359 ~N~l~~~~-----~~~-~~~~l~~l~l~~N~l~ 385 (722)
+|.+++.. ..+ ..+++++|++++|+++
T Consensus 322 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 354 (461)
T 1z7x_W 322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLE 354 (461)
T ss_dssp TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCH
T ss_pred CCCCchHHHHHHHHHHhhCCCccEEEccCCccc
Confidence 55555421 111 3355555555555554
No 74
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=5.5e-23 Score=211.72 Aligned_cols=202 Identities=17% Similarity=0.242 Sum_probs=181.8
Q ss_pred ccceeEEEcCCCCCccccCccccCCCCCCEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEE
Q 004953 81 YLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQ 160 (722)
Q Consensus 81 ~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 160 (722)
+.+++.|+++++.++.. +.+..+++|++|++++|.+++. ..+.++++|++|++++|.+++..+..+..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 45799999999998743 4588999999999999999863 4799999999999999999988888899999999999
Q ss_pred cccCCCCCCCchhhcCcCCCCEEECCCccccCCCCcCCCCCCccceeecccCCCCCCCCccCCCCCCCcEEECcCCCCCC
Q 004953 161 IDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEG 240 (722)
Q Consensus 161 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~ 240 (722)
+++|++++..+..|.++++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+++
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS 195 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc
Confidence 99999998888889999999999999999998888889999999999999999998888888999999999999999997
Q ss_pred CCcchhccCCCCCcEEEccCCCCccCCCCCCCCCCccEEEccCCCCCccCCCc
Q 004953 241 TTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLDLSSNQLNGSIPPG 293 (722)
Q Consensus 241 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~ 293 (722)
..+..+..+++|+.|++++|.+.+. +++|+.|+++.|.++|.+|..
T Consensus 196 -~~~~~~~~l~~L~~L~l~~N~~~~~------~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 196 -VPDGVFDRLTSLQYIWLHDNPWDCT------CPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp -CCTTTTTTCTTCCEEECCSSCBCCC------TTTTHHHHHHHHHTGGGBBCT
T ss_pred -cCHHHHhCCcCCCEEEccCCCcccc------CcHHHHHHHHHHhCCCcccCc
Confidence 4667789999999999999998754 557888888888888877765
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=3e-22 Score=205.97 Aligned_cols=210 Identities=23% Similarity=0.286 Sum_probs=183.7
Q ss_pred CCCCCCCCCC--CCceeecCCCCCC----CCccceeEEEcCCCCCccccCccccCCCCCCEEECCCCCCccCCCccccCC
Q 004953 56 NWNRGDPCTS--NWTGVLCFNTTMD----DGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNI 129 (722)
Q Consensus 56 ~w~~~~~C~~--~w~gv~C~~~~~~----~~~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l 129 (722)
.|.+ ..|.| .|+.+.|...... ....+++.|++++|.+++..+..|.++++|++|+|++|.++...+..|.++
T Consensus 6 ~~~~-~~C~c~~~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l 84 (270)
T 2o6q_A 6 KKDG-GVCSCNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKEL 84 (270)
T ss_dssp GGGT-CSBEEETTTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSC
T ss_pred CCCC-CCCEeCCCCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCC
Confidence 3543 33443 6888999755432 223479999999999998877889999999999999999997777778999
Q ss_pred CCCCEEeccCCcCCCCCCccCCCCCCCcEEEcccCCCCCCCchhhcCcCCCCEEECCCccccCCCCcCCCCCCccceeec
Q 004953 130 KSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLL 209 (722)
Q Consensus 130 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L 209 (722)
++|++|+|++|.+++..+..|..+++|++|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++
T Consensus 85 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 164 (270)
T 2o6q_A 85 KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRL 164 (270)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEe
Confidence 99999999999999888888899999999999999999988889999999999999999999877778999999999999
Q ss_pred ccCCCCCCCCccCCCCCCCcEEECcCCCCCCCCcchhccCCCCCcEEEccCCCCccCC
Q 004953 210 DNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPM 267 (722)
Q Consensus 210 ~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 267 (722)
++|++++..+..|..+++|+.|++++|.+++ ..+..+..+++|+.|+|++|.+....
T Consensus 165 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 165 YNNQLKRVPEGAFDKLTELKTLKLDNNQLKR-VPEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred cCCcCcEeChhHhccCCCcCEEECCCCcCCc-CCHHHhccccCCCEEEecCCCeeCCC
Confidence 9999998888889999999999999999986 34556889999999999999987654
No 76
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=1.2e-22 Score=206.45 Aligned_cols=190 Identities=18% Similarity=0.259 Sum_probs=142.6
Q ss_pred CCCCCceeecCCCCCCCCccceeEEEcCCCCCccccCccccCCCCCCEEECCCCCCccCCCccccCCCCCCEEeccCCcC
Q 004953 63 CTSNWTGVLCFNTTMDDGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNEL 142 (722)
Q Consensus 63 C~~~w~gv~C~~~~~~~~~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l 142 (722)
|+ .|.|..|.. ..+.+++++++++ .+|..+. ++|++|+|++|.+++..+..|.++++|++|+|++|.+
T Consensus 4 Cp-~~~gC~C~~--------~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 71 (251)
T 3m19_A 4 CE-TVTGCTCNE--------GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL 71 (251)
T ss_dssp CH-HHHSSEEEG--------GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred CC-CCCceEcCC--------CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcC
Confidence 53 688989942 4678899988887 4555554 5889999999999888888888889999999999988
Q ss_pred CCCCCccCCCCCCCcEEEcccCCCCCCCchhhcCcCCCCEEECCCccccCCCCcCCCCCCccceeecccCCCCCCCCccC
Q 004953 143 TGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPEL 222 (722)
Q Consensus 143 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l 222 (722)
++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|.+++..+..|..+++|++|++++|++++..+..|
T Consensus 72 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 151 (251)
T 3m19_A 72 QTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAF 151 (251)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHc
Confidence 88777778888888888888888887777778888888888888888876666667777777777777777776655567
Q ss_pred CCCCCCcEEECcCCCCCCCCcchhccCCCCCcEEEccCCCCcc
Q 004953 223 SELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQG 265 (722)
Q Consensus 223 ~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 265 (722)
..+++|+.|++++|++++ ..+..+..+++|+.|+|++|.+++
T Consensus 152 ~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 152 DKLTNLQTLSLSTNQLQS-VPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp TTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSCCBCT
T ss_pred CcCcCCCEEECCCCcCCc-cCHHHHhCCCCCCEEEeeCCceeC
Confidence 777777777777777764 233445555555555555555543
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=2.7e-22 Score=208.44 Aligned_cols=205 Identities=22% Similarity=0.308 Sum_probs=117.5
Q ss_pred CCCCCCCcEEEcccCCCCCCCchhhcCcCCCCEEECCCccccCCCCcCCCCCCccceeecccCCCCCCCCccCCCCCCCc
Q 004953 150 LGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLL 229 (722)
Q Consensus 150 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~ 229 (722)
+.++++++++++++|.++. +|..+. ++++.|++++|.+++..+..|..+++|++|++++|++++..+ ...+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred ccccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence 3455566666666666653 333332 455566666666555555555555555555555555553322 14455555
Q ss_pred EEECcCCCCCCCCcchhccCCCCCcEEEccCCCCccCCCC-CCCCCCccEEEccCCCCCccCCCccccCCcCEEEccCCc
Q 004953 230 ILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMPD-LSRIPNLGYLDLSSNQLNGSIPPGRLSLNITTIKLSNNK 308 (722)
Q Consensus 230 ~L~l~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~L~~L~L~~N~ 308 (722)
+|++++|.++ .+|..+..+++|+.|++++|++++..+. +..++ +|++|+|++|+
T Consensus 81 ~L~Ls~N~l~--~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~-----------------------~L~~L~L~~N~ 135 (290)
T 1p9a_G 81 TLDLSHNQLQ--SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG-----------------------ELQELYLKGNE 135 (290)
T ss_dssp EEECCSSCCS--SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCT-----------------------TCCEEECTTSC
T ss_pred EEECCCCcCC--cCchhhccCCCCCEEECCCCcCcccCHHHHcCCC-----------------------CCCEEECCCCC
Confidence 5555555554 2444444444444444444444433322 33344 55555555555
Q ss_pred CcccCCccCCCCCCCCEEeCCCCcCcccCChhhhhhccCCCCcccEEEccCCcCCCCCCCC-CCCCceEEEccCCcCcCC
Q 004953 309 LTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGSF-NIPPNVTVRLRGNPFCLN 387 (722)
Q Consensus 309 l~~~~~~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~ls~N~l~~~~~~~-~~~~l~~l~l~~N~l~~~ 387 (722)
+++..+..|..+++|+.|+|++|+|+ .+|...+. .+++|+.|++++|+|+.++..+ ..++++.+++++|||.|+
T Consensus 136 l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~----~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 136 LKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLN----GLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCS-CCCTTTTT----TCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred CCccChhhcccccCCCEEECCCCcCC-ccCHHHhc----CcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCc
Confidence 55555556666777777777777776 34443321 2356777777777777776655 667888999999999998
Q ss_pred CC
Q 004953 388 TN 389 (722)
Q Consensus 388 ~~ 389 (722)
|.
T Consensus 211 c~ 212 (290)
T 1p9a_G 211 CE 212 (290)
T ss_dssp GG
T ss_pred Cc
Confidence 75
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=6.3e-23 Score=207.01 Aligned_cols=195 Identities=16% Similarity=0.189 Sum_probs=137.2
Q ss_pred CCCEEECCCCCCccCCCccccCCCCCCEEeccCCc-CCCCCCccCCCCCCCcEEEccc-CCCCCCCchhhcCcCCCCEEE
Q 004953 107 YLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNE-LTGSLPEELGYLPKLDRIQIDQ-NYISGSLPKSFANLNKTRHFH 184 (722)
Q Consensus 107 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~ 184 (722)
+|++|++++|++++..+..|.++++|++|++++|+ ++...+..|.++++|++|++++ |++++..+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 67777777777776666667777777777777775 6655555677777777777776 777766666777777777777
Q ss_pred CCCccccCCCCcCCCCCCccc---eeecccC-CCCCCCCccCCCCCCCc-EEECcCCCCCCCCcchhccCCCCCcEEEcc
Q 004953 185 MNNNSISGQIPPELSRLPSLV---HMLLDNN-NLTGYLPPELSELPKLL-ILQLDNNNFEGTTIPASYSNMSKLLKLSLR 259 (722)
Q Consensus 185 L~~N~l~~~~~~~l~~l~~L~---~L~L~~N-~l~~~~~~~l~~l~~L~-~L~l~~N~l~~~~~~~~~~~l~~L~~L~L~ 259 (722)
+++|.+++ +|. +..+++|+ +|++++| ++++..+..|..+++|+ .|++++|.++ .+|......++|+.|+++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~--~i~~~~~~~~~L~~L~L~ 187 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT--SVQGYAFNGTKLDAVYLN 187 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC--EECTTTTTTCEEEEEECT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc--ccCHhhcCCCCCCEEEcC
Confidence 77777765 444 66666666 7777777 77766666677777777 7888777776 344433333678888888
Q ss_pred CCC-CccCCCC-CCCC-CCccEEEccCCCCCccCCCccccCCcCEEEccCC
Q 004953 260 NCS-LQGPMPD-LSRI-PNLGYLDLSSNQLNGSIPPGRLSLNITTIKLSNN 307 (722)
Q Consensus 260 ~N~-l~~~~~~-l~~l-~~L~~L~Ls~N~l~~~ip~~~~~~~L~~L~L~~N 307 (722)
+|+ +++..+. +..+ ++|+.|++++|+++ .+|.. ...+|+.|+++++
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~-~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK-GLEHLKELIARNT 236 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT-TCTTCSEEECTTC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh-HhccCceeeccCc
Confidence 884 7765443 6677 78888888888887 56655 4457888887765
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=4.3e-22 Score=206.91 Aligned_cols=196 Identities=25% Similarity=0.214 Sum_probs=103.4
Q ss_pred cceeEEEcCCCCCccccCccccCCCCCCEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEEc
Q 004953 82 LHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQI 161 (722)
Q Consensus 82 ~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 161 (722)
++++.+++++++++. +|..+. +++++|+|++|.+++..|..|.++++|++|+|++|.+++..+ ...+++|++|++
T Consensus 10 ~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L 84 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDL 84 (290)
T ss_dssp TTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEEC
T ss_pred CCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEEC
Confidence 356666666666653 343332 456666666666666556666666666666666666664322 255666666666
Q ss_pred ccCCCCCCCchhhcCcCCCCEEECCCccccCCCCcCCCCCCccceeecccCCCCCCCCccCCCCCCCcEEECcCCCCCCC
Q 004953 162 DQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGT 241 (722)
Q Consensus 162 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~ 241 (722)
++|+++ .+|..+..+++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|+.|++++|+++.
T Consensus 85 s~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~- 162 (290)
T 1p9a_G 85 SHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE- 162 (290)
T ss_dssp CSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC-
T ss_pred CCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc-
Confidence 666665 345555555566666666665555544555555555555555555554444445555555555555555543
Q ss_pred CcchhccCCCCCcEEEccCCCCccCCCCCCCCCCccEEEccCC
Q 004953 242 TIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLDLSSN 284 (722)
Q Consensus 242 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~l~~l~~L~~L~Ls~N 284 (722)
..+..+..+++|+.|+|++|+++...+.+...++|+.|+|++|
T Consensus 163 l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 163 LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSC
T ss_pred cCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCC
Confidence 1122334444444444444444433223333333333333333
No 80
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=1.5e-22 Score=212.68 Aligned_cols=224 Identities=20% Similarity=0.186 Sum_probs=182.2
Q ss_pred ceeEEEcCCCCCccccCc---cccCCCCCCEEECCCCCCccCCCccc--cCCCCCCEEeccCCcCCCCCC----ccCCCC
Q 004953 83 HLRELQLLNLNLSGNLSP---EIGRLSYLTILDFMWNKISGSIPKEI--GNIKSLELLLLNGNELTGSLP----EELGYL 153 (722)
Q Consensus 83 ~l~~L~L~~~~l~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~L~~n~l~~~~p----~~~~~l 153 (722)
.++.+.+.++.++...-. .+..+++|++|++++|.+++..|..+ ..+++|++|+|++|.+++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 467788888777643211 12345779999999999999999988 999999999999999997655 445689
Q ss_pred CCCcEEEcccCCCCCCCchhhcCcCCCCEEECCCccccCC---C-CcCCCCCCccceeecccCCCCCCCCc----cCCCC
Q 004953 154 PKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQ---I-PPELSRLPSLVHMLLDNNNLTGYLPP----ELSEL 225 (722)
Q Consensus 154 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~---~-~~~l~~l~~L~~L~L~~N~l~~~~~~----~l~~l 225 (722)
++|++|+|++|++++..+..|.++++|++|+|++|++.+. . +..+..+++|++|++++|+++.. +. .+..+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP-TGVCAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH-HHHHHHHHHHT
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch-HHHHHHHHhcC
Confidence 9999999999999988889999999999999999997642 1 23357899999999999999732 22 25678
Q ss_pred CCCcEEECcCCCCCCCCcchhccCC---CCCcEEEccCCCCccCCCCCCCCCCccEEEccCCCCCccCCCccccCCcCEE
Q 004953 226 PKLLILQLDNNNFEGTTIPASYSNM---SKLLKLSLRNCSLQGPMPDLSRIPNLGYLDLSSNQLNGSIPPGRLSLNITTI 302 (722)
Q Consensus 226 ~~L~~L~l~~N~l~~~~~~~~~~~l---~~L~~L~L~~N~l~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~L~~L 302 (722)
++|++|++++|.+++ ..|..+..+ ++|++|+|++|+++..+..+. ++|++|+|++|++++ +|.....++|+.|
T Consensus 224 ~~L~~L~Ls~N~l~~-~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~-~~~~~~l~~L~~L 299 (310)
T 4glp_A 224 VQPHSLDLSHNSLRA-TVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNR-APQPDELPEVDNL 299 (310)
T ss_dssp CCCSSEECTTSCCCC-CCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCS-CCCTTSCCCCSCE
T ss_pred CCCCEEECCCCCCCc-cchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCC-CchhhhCCCccEE
Confidence 999999999999997 457777666 699999999999995544453 799999999999995 4443344799999
Q ss_pred EccCCcCcc
Q 004953 303 KLSNNKLTG 311 (722)
Q Consensus 303 ~L~~N~l~~ 311 (722)
+|++|+++.
T Consensus 300 ~L~~N~l~~ 308 (310)
T 4glp_A 300 TLDGNPFLV 308 (310)
T ss_dssp ECSSTTTSC
T ss_pred ECcCCCCCC
Confidence 999999974
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=7.9e-22 Score=198.93 Aligned_cols=218 Identities=16% Similarity=0.171 Sum_probs=145.4
Q ss_pred CCCCCCC-ce--eecCCCC-CCCCccceeEEEcCCCCCccccCccccCCCCCCEEECCCCC-CccCCCccccCCCCCCEE
Q 004953 61 DPCTSNW-TG--VLCFNTT-MDDGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNK-ISGSIPKEIGNIKSLELL 135 (722)
Q Consensus 61 ~~C~~~w-~g--v~C~~~~-~~~~~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L 135 (722)
..|.|.+ .+ |.|.+.. .+....+++.|++++|.+++..+..|.++++|++|++++|+ ++...+..|.++++|++|
T Consensus 6 ~~C~C~~~~~~~v~c~~l~~ip~~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L 85 (239)
T 2xwt_C 6 PPCECHQEEDFRVTCKDIQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHI 85 (239)
T ss_dssp SSCSEEECSTTEEEECSCSSCCCCCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEE
T ss_pred CCCeeCCCCcceeEccCccccCCCCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEE
Confidence 4566543 43 4475421 22223367777777777776666677777777777777775 766656677777777777
Q ss_pred eccC-CcCCCCCCccCCCCCCCcEEEcccCCCCCCCchhhcCcCCCC---EEECCCc-cccCCCCcCCCCCCccc-eeec
Q 004953 136 LLNG-NELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTR---HFHMNNN-SISGQIPPELSRLPSLV-HMLL 209 (722)
Q Consensus 136 ~L~~-n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~---~L~L~~N-~l~~~~~~~l~~l~~L~-~L~L 209 (722)
++++ |.+++..+..|.++++|++|++++|++++ +|. |..+++|+ +|++++| .+++..+..|..+++|+ +|++
T Consensus 86 ~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l 163 (239)
T 2xwt_C 86 EIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKL 163 (239)
T ss_dssp EEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEEC
T ss_pred ECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEc
Confidence 7777 77776666667777777777777777775 444 66677776 7777777 77766666677777777 7777
Q ss_pred ccCCCCCCCCccCCCCCCCcEEECcCCC-CCCCCcchhccCC-CCCcEEEccCCCCccCCCCCCCCCCccEEEccCC
Q 004953 210 DNNNLTGYLPPELSELPKLLILQLDNNN-FEGTTIPASYSNM-SKLLKLSLRNCSLQGPMPDLSRIPNLGYLDLSSN 284 (722)
Q Consensus 210 ~~N~l~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~l~~l~~L~~L~Ls~N 284 (722)
++|+++...+..+.. ++|+.|++++|+ +++ ..+..+..+ ++|+.|++++|++++..+. .+++|+.|+++++
T Consensus 164 ~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~-i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 164 YNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTV-IDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CSCCCCEECTTTTTT-CEEEEEECTTCTTCCE-ECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred CCCCCcccCHhhcCC-CCCCEEEcCCCCCccc-CCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence 777777433334444 677777777774 764 234556677 7777777777777754433 5667777777665
No 82
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=9.4e-24 Score=226.92 Aligned_cols=252 Identities=18% Similarity=0.157 Sum_probs=147.0
Q ss_pred EEcCCCCCccccCccccCCCCCCEEECCCCCCccCCC----ccccCCC-CCCEEeccCCcCCCCCCccCCCC-----CCC
Q 004953 87 LQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIP----KEIGNIK-SLELLLLNGNELTGSLPEELGYL-----PKL 156 (722)
Q Consensus 87 L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p----~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l-----~~L 156 (722)
++++.+++++.+|..+...++|++|||++|.+++..+ ..|.+++ +|++|+|++|.+++..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 5677788887777666666678888888888876666 6677777 78888888888876666666554 778
Q ss_pred cEEEcccCCCCCCCchhhcC----c-CCCCEEECCCccccCCCCcCC----CC-CCccceeecccCCCCCCCCc----cC
Q 004953 157 DRIQIDQNYISGSLPKSFAN----L-NKTRHFHMNNNSISGQIPPEL----SR-LPSLVHMLLDNNNLTGYLPP----EL 222 (722)
Q Consensus 157 ~~L~L~~N~l~~~~p~~~~~----l-~~L~~L~L~~N~l~~~~~~~l----~~-l~~L~~L~L~~N~l~~~~~~----~l 222 (722)
++|+|++|.+++..+..+.. + ++|++|++++|.+++..+..+ .. .++|++|++++|++++.... .+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 88888888877666664443 3 678888888887776554433 23 24777777777777643322 22
Q ss_pred CCCC-CCcEEECcCCCCCCCCcch----hccCC-CCCcEEEccCCCCccCCC-----CCCC-CCCccEEEccCCCCCccC
Q 004953 223 SELP-KLLILQLDNNNFEGTTIPA----SYSNM-SKLLKLSLRNCSLQGPMP-----DLSR-IPNLGYLDLSSNQLNGSI 290 (722)
Q Consensus 223 ~~l~-~L~~L~l~~N~l~~~~~~~----~~~~l-~~L~~L~L~~N~l~~~~~-----~l~~-l~~L~~L~Ls~N~l~~~i 290 (722)
..++ +|++|++++|.+++ ..+. .+..+ ++|+.|+|++|.+++... .+.. .++|++|+|++|.+++..
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLAS-KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HTSCTTCCEEECTTSCGGG-SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred hcCCccccEeeecCCCCch-hhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 3333 66677777766654 2332 22333 366666666666654211 1222 235555666665555322
Q ss_pred CCc-----cccCCcCEEEccCCcCcccC-------CccCCCCCCCCEEeCCCCcCcccCCh
Q 004953 291 PPG-----RLSLNITTIKLSNNKLTGTI-------PSNFSGLPRLQRLFIANNSLSGSIPS 339 (722)
Q Consensus 291 p~~-----~~~~~L~~L~L~~N~l~~~~-------~~~~~~l~~L~~L~L~~N~l~~~ip~ 339 (722)
+.. ...++|+.|+|++|.+.+.. +..+..+++|+.||+++|++.+..+.
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~ 302 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSI 302 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCH
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchH
Confidence 110 01134555555555533221 12344445555555555555544333
No 83
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.87 E-value=1.5e-21 Score=208.67 Aligned_cols=244 Identities=18% Similarity=0.219 Sum_probs=179.2
Q ss_pred CCCCCceeecCCCCCCCCccceeEEEcCCCCCccccCccccCCCCCCEEECCCCCCccCCCccccCCCCCCEEeccCCcC
Q 004953 63 CTSNWTGVLCFNTTMDDGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNEL 142 (722)
Q Consensus 63 C~~~w~gv~C~~~~~~~~~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l 142 (722)
|.|.|+.|.|.+. +++ .+|..+ .+++++|+|++|+|+...+.+|.++++|++|+|++|++
T Consensus 7 C~C~~~~v~C~~~-----------------~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i 66 (350)
T 4ay9_X 7 CHCSNRVFLCQES-----------------KVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 66 (350)
T ss_dssp SEEETTEEEEEST-----------------TCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTT
T ss_pred cEeeCCEEEecCC-----------------CCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCC
Confidence 7778888888543 333 345444 25788999999998866666788899999999999988
Q ss_pred CCCCC-ccCCCCCCCcE-EEcccCCCCCCCchhhcCcCCCCEEECCCccccCCCCcCCCCCCccceeeccc-CCCCCCCC
Q 004953 143 TGSLP-EELGYLPKLDR-IQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDN-NNLTGYLP 219 (722)
Q Consensus 143 ~~~~p-~~~~~l~~L~~-L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~-N~l~~~~~ 219 (722)
.+.+| ..|.++++|++ +.++.|+++...|..|.++++|++|++++|.+....+..+....++..|++.+ +++....+
T Consensus 67 ~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~ 146 (350)
T 4ay9_X 67 LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER 146 (350)
T ss_dssp CCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECT
T ss_pred CCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccc
Confidence 66554 46788888765 56667888888888888899999999999988877766777777888888865 56766666
Q ss_pred ccCCCCC-CCcEEECcCCCCCCCCcchhccCCCCCcEEEccC-CCCccCCCC-CCCCCCccEEEccCCCCCccCCCcccc
Q 004953 220 PELSELP-KLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRN-CSLQGPMPD-LSRIPNLGYLDLSSNQLNGSIPPGRLS 296 (722)
Q Consensus 220 ~~l~~l~-~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~-l~~l~~L~~L~Ls~N~l~~~ip~~~~~ 296 (722)
..|..+. .++.|++++|+++ .++.......+|+.|++.+ |.++...+. |..+++|++|++++|+|+ .+|.. ..
T Consensus 147 ~~f~~~~~~l~~L~L~~N~i~--~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~-~~ 222 (350)
T 4ay9_X 147 NSFVGLSFESVILWLNKNGIQ--EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSY-GL 222 (350)
T ss_dssp TSSTTSBSSCEEEECCSSCCC--EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSS-SC
T ss_pred cchhhcchhhhhhcccccccc--CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChh-hh
Confidence 6676664 5888888888887 3666555667788888875 556554443 678888888888888888 67765 34
Q ss_pred CCcCEEEccCCcCcccCCccCCCCCCCCEEeCCCC
Q 004953 297 LNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANN 331 (722)
Q Consensus 297 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 331 (722)
.+|+.|.+.++.--..+| .+..+++|+.+++.++
T Consensus 223 ~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 223 ENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp TTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred ccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 577777766654444555 3777888888887655
No 84
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=2.4e-21 Score=196.94 Aligned_cols=180 Identities=22% Similarity=0.270 Sum_probs=156.9
Q ss_pred CCCCEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEEcccCCCCCCCchhhcCcCCCCEEEC
Q 004953 106 SYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHM 185 (722)
Q Consensus 106 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 185 (722)
...++++++++.++ .+|..+. ++|++|+|++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|++|++
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 35788999999998 6676664 68999999999999888888999999999999999999888888999999999999
Q ss_pred CCccccCCCCcCCCCCCccceeecccCCCCCCCCccCCCCCCCcEEECcCCCCCCCCcchhccCCCCCcEEEccCCCCcc
Q 004953 186 NNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQG 265 (722)
Q Consensus 186 ~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 265 (722)
++|.+++..+..|..+++|++|++++|++++..+..|..+++|+.|++++|.+++ ..+..+..+++|+.|+|++|++++
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS-IPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCc-cCHHHcCcCcCCCEEECCCCcCCc
Confidence 9999998888888999999999999999997777778899999999999999986 244578889999999999999987
Q ss_pred CCC-CCCCCCCccEEEccCCCCCcc
Q 004953 266 PMP-DLSRIPNLGYLDLSSNQLNGS 289 (722)
Q Consensus 266 ~~~-~l~~l~~L~~L~Ls~N~l~~~ 289 (722)
..+ .+..+++|+.|++++|.+++.
T Consensus 170 ~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 170 VPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCHHHHhCCCCCCEEEeeCCceeCC
Confidence 766 477888899999999988754
No 85
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.87 E-value=1.2e-21 Score=193.12 Aligned_cols=181 Identities=19% Similarity=0.244 Sum_probs=111.0
Q ss_pred CCCCCCCCceeecCCCCCCCCccceeEEEcCCCCCccccCccccCCCCCCEEECCCCCCccCCCccccCCCCCCEEeccC
Q 004953 60 GDPCTSNWTGVLCFNTTMDDGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNG 139 (722)
Q Consensus 60 ~~~C~~~w~gv~C~~~~~~~~~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 139 (722)
.+.|.|.|+++.|..... + .+|..+ .++|++|++++|++++..+..|.++++|++|++++
T Consensus 2 p~~C~C~~~~v~c~~~~l-----------------~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 61 (208)
T 2o6s_A 2 PSRCSCSGTTVECYSQGR-----------------T-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGG 61 (208)
T ss_dssp CTTCEEETTEEECCSSCC-----------------S-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred cCCCEECCCEEEecCCCc-----------------c-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCC
Confidence 356888999999965321 1 112222 23566666666666655555556666666666666
Q ss_pred CcCCCCCCccCCCCCCCcEEEcccCCCCCCCchhhcCcCCCCEEECCCccccCCCCcCCCCCCccceeecccCCCCCCCC
Q 004953 140 NELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLP 219 (722)
Q Consensus 140 n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~ 219 (722)
|++++..+..|..+++|++|++++|++++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|++++..+
T Consensus 62 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 141 (208)
T 2o6s_A 62 NKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD 141 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCH
Confidence 66665555555666666666666666665555556666666666666666665555556666666666666666665555
Q ss_pred ccCCCCCCCcEEECcCCCCCCCCcchhccCCCCCcEEEccCCCCccCCC
Q 004953 220 PELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMP 268 (722)
Q Consensus 220 ~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 268 (722)
..+..+++|+.|++++|.+.+ .+++|+.|+++.|+++|.+|
T Consensus 142 ~~~~~l~~L~~L~l~~N~~~~--------~~~~l~~L~~~~n~~~g~ip 182 (208)
T 2o6s_A 142 GVFDRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWINKHSGVVR 182 (208)
T ss_dssp TTTTTCTTCCEEECCSCCBCC--------CTTTTHHHHHHHHHCTTTBB
T ss_pred HHhccCCCccEEEecCCCeec--------CCCCHHHHHHHHHhCCceee
Confidence 556666666666666666543 23456666666666666555
No 86
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=2.3e-23 Score=223.93 Aligned_cols=225 Identities=16% Similarity=0.169 Sum_probs=152.6
Q ss_pred EEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCC----ccCCCCC-CCcEEEcccCCCCCCCchhhcCc-----CC
Q 004953 110 ILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLP----EELGYLP-KLDRIQIDQNYISGSLPKSFANL-----NK 179 (722)
Q Consensus 110 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p----~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l-----~~ 179 (722)
++++++|.+++.+|..+...++|++|+|++|.+++..+ ..+..++ +|++|+|++|.+++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46889999998888877777779999999999987666 6777888 89999999999988878777775 88
Q ss_pred CCEEECCCccccCCCCcCCC----CC-CccceeecccCCCCCCCCccC----CC-CCCCcEEECcCCCCCCCC---cchh
Q 004953 180 TRHFHMNNNSISGQIPPELS----RL-PSLVHMLLDNNNLTGYLPPEL----SE-LPKLLILQLDNNNFEGTT---IPAS 246 (722)
Q Consensus 180 L~~L~L~~N~l~~~~~~~l~----~l-~~L~~L~L~~N~l~~~~~~~l----~~-l~~L~~L~l~~N~l~~~~---~~~~ 246 (722)
|++|+|++|.+++..+..+. .+ ++|++|++++|++++..+..+ .. .++|++|++++|.+++.. ++..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 99999999998876665433 33 788888888888876655443 33 357888888888876421 1233
Q ss_pred ccCCC-CCcEEEccCCCCccCCC-----CCCCC-CCccEEEccCCCCCcc----CCCccc--cCCcCEEEccCCcCcccC
Q 004953 247 YSNMS-KLLKLSLRNCSLQGPMP-----DLSRI-PNLGYLDLSSNQLNGS----IPPGRL--SLNITTIKLSNNKLTGTI 313 (722)
Q Consensus 247 ~~~l~-~L~~L~L~~N~l~~~~~-----~l~~l-~~L~~L~Ls~N~l~~~----ip~~~~--~~~L~~L~L~~N~l~~~~ 313 (722)
+..++ +|++|+|++|++++..+ .+... ++|++|+|++|.+++. ++.... .++|++|+|++|.+++..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 34444 77777777777765443 13334 3677777777776631 222211 135666666666665543
Q ss_pred C----ccCCCCCCCCEEeCCCCcCc
Q 004953 314 P----SNFSGLPRLQRLFIANNSLS 334 (722)
Q Consensus 314 ~----~~~~~l~~L~~L~L~~N~l~ 334 (722)
+ ..+..+++|+.|+|++|.+.
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~ 266 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVK 266 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHT
T ss_pred HHHHHHHHhcCCCccEEEeccCCcc
Confidence 3 23345556666666666544
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=2.7e-21 Score=202.79 Aligned_cols=193 Identities=22% Similarity=0.366 Sum_probs=102.4
Q ss_pred cCCCCCCEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEEcccCCCCCCCchhhcCcCCCCE
Q 004953 103 GRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRH 182 (722)
Q Consensus 103 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 182 (722)
..+++|++|++++|.++. +| .+..+++|++|+|++|.+++..+ +..+++|++|++++|++++. ..+..+++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~ 111 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKT 111 (308)
T ss_dssp HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred HHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence 445566666666666653 33 45566666666666666653322 55555666666665555532 23444555555
Q ss_pred EECCCccccCCCCcCCCCCCccceeecccCCCCCCCCccCCCCCCCcEEECcCCCCCCCCcchhccCCCCCcEEEccCCC
Q 004953 183 FHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCS 262 (722)
Q Consensus 183 L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 262 (722)
|++++|.+++ . + .+..+++|++|++++|.+++ ++. +..+++|+.|++++|+
T Consensus 112 L~l~~n~l~~------------------------~-~-~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~l~~n~ 162 (308)
T 1h6u_A 112 LDLTSTQITD------------------------V-T-PLAGLSNLQVLYLDLNQITN--ISP-LAGLTNLQYLSIGNAQ 162 (308)
T ss_dssp EECTTSCCCC------------------------C-G-GGTTCTTCCEEECCSSCCCC--CGG-GGGCTTCCEEECCSSC
T ss_pred EECCCCCCCC------------------------c-h-hhcCCCCCCEEECCCCccCc--Ccc-ccCCCCccEEEccCCc
Confidence 5555554443 2 1 24455555555555555543 222 5555555666665555
Q ss_pred CccCCCCCCCCCCccEEEccCCCCCccCCCccccCCcCEEEccCCcCcccCCccCCCCCCCCEEeCCCCcCc
Q 004953 263 LQGPMPDLSRIPNLGYLDLSSNQLNGSIPPGRLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLS 334 (722)
Q Consensus 263 l~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 334 (722)
+++..+ +..+++|+.|++++|++++ ++.....++|++|++++|++++..+ +..+++|+.|++++|+++
T Consensus 163 l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 163 VSDLTP-LANLSKLTTLKADDNKISD-ISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CCCCGG-GTTCTTCCEEECCSSCCCC-CGGGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred CCCChh-hcCCCCCCEEECCCCccCc-ChhhcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence 554332 5555566666666666552 2222222455555555555554432 556666666666666665
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=6.4e-21 Score=199.91 Aligned_cols=191 Identities=21% Similarity=0.356 Sum_probs=157.1
Q ss_pred ccceeEEEcCCCCCccccCccccCCCCCCEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEE
Q 004953 81 YLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQ 160 (722)
Q Consensus 81 ~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 160 (722)
+++++.|+++++.+.. ++ .+..+++|++|+|++|.+++..+ +.++++|++|+|++|.+++. ..+..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~ 113 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLD 113 (308)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEE
T ss_pred cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEE
Confidence 5689999999999985 34 68999999999999999996554 99999999999999999864 3699999999999
Q ss_pred cccCCCCCCCchhhcCcCCCCEEECCCccccCCCCcCCCCCCccceeecccCCCCCCCCccCCCCCCCcEEECcCCCCCC
Q 004953 161 IDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEG 240 (722)
Q Consensus 161 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~ 240 (722)
+++|++++. + .+..+++|++|++++|.+++..+ +..+++|++|++++|++++..+ +..+++|+.|++++|.+++
T Consensus 114 l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 114 LTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD 187 (308)
T ss_dssp CTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred CCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCc
Confidence 999999864 3 38999999999999999986544 7888899999999998886433 7888888888888888875
Q ss_pred CCcchhccCCCCCcEEEccCCCCccCCCCCCCCCCccEEEccCCCCC
Q 004953 241 TTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLDLSSNQLN 287 (722)
Q Consensus 241 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~l~~l~~L~~L~Ls~N~l~ 287 (722)
++. +..+++|+.|++++|++++.. .+..+++|+.|++++|+++
T Consensus 188 --~~~-l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 188 --ISP-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp --CGG-GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEEEE
T ss_pred --Chh-hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCeee
Confidence 333 677778888888888777554 3666677777777777665
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=9.8e-24 Score=224.20 Aligned_cols=261 Identities=15% Similarity=0.175 Sum_probs=171.6
Q ss_pred CCceeecCCCCCCCCccceeEEEcCCCCCccccCccccCC--CCCCEEECCCCCCccCCCccccCCCCCCEEeccCCcCC
Q 004953 66 NWTGVLCFNTTMDDGYLHLRELQLLNLNLSGNLSPEIGRL--SYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELT 143 (722)
Q Consensus 66 ~w~gv~C~~~~~~~~~~~l~~L~L~~~~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 143 (722)
.|.++.|+. ..++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.++
T Consensus 38 ~W~~~~~~~-------~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~ 106 (336)
T 2ast_B 38 RWYRLASDE-------SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIE 106 (336)
T ss_dssp HHHHHHTCS-------TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEEC
T ss_pred HHHHHhcCc-------hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcC
Confidence 698888742 24788999988876 3456666 7889999999988876655 557888888888888887
Q ss_pred CC-CCccCCCCCCCcEEEcccCCCCCCCchhhcCcCCCCEEECCCc-cccCC-CCcCCCCCCccceeecccC-CCCCC-C
Q 004953 144 GS-LPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNN-SISGQ-IPPELSRLPSLVHMLLDNN-NLTGY-L 218 (722)
Q Consensus 144 ~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~-~~~~l~~l~~L~~L~L~~N-~l~~~-~ 218 (722)
+. +|..+..+++|++|++++|.+++..+..++.+++|++|++++| .+++. ++..+..+++|++|++++| .+++. +
T Consensus 107 ~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~ 186 (336)
T 2ast_B 107 VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHV 186 (336)
T ss_dssp HHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHH
T ss_pred HHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHH
Confidence 55 6777788888888888888887777778888888888888888 56542 4445666777777777777 76643 3
Q ss_pred CccCCCCC-CCcEEECcCC--CCCCCCcchhccCCCCCcEEEccCCC-CccC-CCCCCCCCCccEEEccCCCCCccCCCc
Q 004953 219 PPELSELP-KLLILQLDNN--NFEGTTIPASYSNMSKLLKLSLRNCS-LQGP-MPDLSRIPNLGYLDLSSNQLNGSIPPG 293 (722)
Q Consensus 219 ~~~l~~l~-~L~~L~l~~N--~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~-~~~l~~l~~L~~L~Ls~N~l~~~ip~~ 293 (722)
+..+..++ +|++|++++| .++...++..+..+++|+.|++++|. +++. .+.+..+++|++|++++|.
T Consensus 187 ~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~-------- 258 (336)
T 2ast_B 187 QVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY-------- 258 (336)
T ss_dssp HHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT--------
T ss_pred HHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC--------
Confidence 45556666 7777777777 34321345555666666666666666 4432 2234455555555555553
Q ss_pred cccCCcCEEEccCCcCcccCCccCCCCCCCCEEeCCCCcCcccCChhhhhhccCCCCcccEEEccCCcCCCCCC
Q 004953 294 RLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISG 367 (722)
Q Consensus 294 ~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~ls~N~l~~~~~ 367 (722)
.+.......+..+++|+.|++++| ++...-..+. ..+..|++++|+++++.+
T Consensus 259 --------------~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~-------~~l~~L~l~~n~l~~~~~ 310 (336)
T 2ast_B 259 --------------DIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK-------EALPHLQINCSHFTTIAR 310 (336)
T ss_dssp --------------TCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH-------HHSTTSEESCCCSCCTTC
T ss_pred --------------CCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH-------hhCcceEEecccCccccC
Confidence 111111124566777777777777 3322211221 234556677888877544
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=1.2e-23 Score=228.14 Aligned_cols=143 Identities=17% Similarity=0.237 Sum_probs=87.7
Q ss_pred ccCccccCCCCCCEEECCCCCCccCCC----ccccCCCCCCEEeccCCcC---CCCCCccC-------CCCCCCcEEEcc
Q 004953 97 NLSPEIGRLSYLTILDFMWNKISGSIP----KEIGNIKSLELLLLNGNEL---TGSLPEEL-------GYLPKLDRIQID 162 (722)
Q Consensus 97 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p----~~~~~l~~L~~L~L~~n~l---~~~~p~~~-------~~l~~L~~L~L~ 162 (722)
.++..+..+++|++|+|++|.++...+ ..+..+++|++|+|++|.+ ++.+|..+ ..+++|++|+|+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 345667778888888888888876533 3366788888888888643 34445444 677788888888
Q ss_pred cCCCCC----CCchhhcCcCCCCEEECCCccccCCCCcCCC----CC---------CccceeecccCCCCC-CCC---cc
Q 004953 163 QNYISG----SLPKSFANLNKTRHFHMNNNSISGQIPPELS----RL---------PSLVHMLLDNNNLTG-YLP---PE 221 (722)
Q Consensus 163 ~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~----~l---------~~L~~L~L~~N~l~~-~~~---~~ 221 (722)
+|.++. .++..+..+++|++|+|++|.++...+..+. .+ ++|++|++++|+++. ..+ ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 888776 3566677777788888877777533222222 22 455555555555541 122 23
Q ss_pred CCCCCCCcEEECcCCCCC
Q 004953 222 LSELPKLLILQLDNNNFE 239 (722)
Q Consensus 222 l~~l~~L~~L~l~~N~l~ 239 (722)
+..+++|+.|++++|.++
T Consensus 183 l~~~~~L~~L~L~~n~l~ 200 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIR 200 (386)
T ss_dssp HHHCTTCCEEECCSSCCC
T ss_pred HHhCCCcCEEECcCCCCC
Confidence 334444555555555443
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=2e-23 Score=226.47 Aligned_cols=241 Identities=17% Similarity=0.273 Sum_probs=134.4
Q ss_pred CCccccCCCCCCEEeccCCcCCCC----CCccCCCCCCCcEEEcccCC---CCCCCchhh-------cCcCCCCEEECCC
Q 004953 122 IPKEIGNIKSLELLLLNGNELTGS----LPEELGYLPKLDRIQIDQNY---ISGSLPKSF-------ANLNKTRHFHMNN 187 (722)
Q Consensus 122 ~p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~---l~~~~p~~~-------~~l~~L~~L~L~~ 187 (722)
++..+..+++|++|+|++|.++.. ++..+..+++|++|+|++|. +++.+|..+ ..+++|++|+|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 445556666666666666666543 22335566666666666643 333344333 4566666666666
Q ss_pred ccccC----CCCcCCCCCCccceeecccCCCCCCCCccCC----CC---------CCCcEEECcCCCCCCCCcc---hhc
Q 004953 188 NSISG----QIPPELSRLPSLVHMLLDNNNLTGYLPPELS----EL---------PKLLILQLDNNNFEGTTIP---ASY 247 (722)
Q Consensus 188 N~l~~----~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~----~l---------~~L~~L~l~~N~l~~~~~~---~~~ 247 (722)
|.++. .++..+..+++|++|++++|.++...+..+. .+ ++|++|++++|+++...++ ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 66654 2444555666666666666666533222222 22 5666666666666522233 344
Q ss_pred cCCCCCcEEEccCCCCcc-----CCC-CCCCCCCccEEEccCCCCC----ccCCCccc-cCCcCEEEccCCcCccc----
Q 004953 248 SNMSKLLKLSLRNCSLQG-----PMP-DLSRIPNLGYLDLSSNQLN----GSIPPGRL-SLNITTIKLSNNKLTGT---- 312 (722)
Q Consensus 248 ~~l~~L~~L~L~~N~l~~-----~~~-~l~~l~~L~~L~Ls~N~l~----~~ip~~~~-~~~L~~L~L~~N~l~~~---- 312 (722)
..+++|+.|++++|+++. ..+ .+..+++|+.|+|++|.++ +.+|.... .++|++|+|++|.+++.
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 263 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 263 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence 556666666666666652 223 4556666666666666664 23443211 24666666666666654
Q ss_pred CCccC--CCCCCCCEEeCCCCcCcc----cCChhhhhhccCCCCcccEEEccCCcCCCCC
Q 004953 313 IPSNF--SGLPRLQRLFIANNSLSG----SIPSSIWQSRTLNATETFILDFQNNNLTNIS 366 (722)
Q Consensus 313 ~~~~~--~~l~~L~~L~L~~N~l~~----~ip~~~~~~~~l~~~~L~~L~ls~N~l~~~~ 366 (722)
++..+ ..+++|+.|+|++|++++ .+|..+.. ++++|+.|++++|++++..
T Consensus 264 l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~----~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 264 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDE----KMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHH----HCTTCCEEECTTSBSCTTS
T ss_pred HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHh----cCCCceEEEccCCcCCcch
Confidence 34444 236667777777777665 35555422 1256667777777766543
No 92
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=1.3e-22 Score=215.55 Aligned_cols=251 Identities=16% Similarity=0.201 Sum_probs=166.7
Q ss_pred CCCEEECCCCCCccCCCccccCC--CCCCEEeccCCcCCCCCCccCCCCCCCcEEEcccCCCCCC-CchhhcCcCCCCEE
Q 004953 107 YLTILDFMWNKISGSIPKEIGNI--KSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGS-LPKSFANLNKTRHF 183 (722)
Q Consensus 107 ~L~~L~Ls~n~l~~~~p~~~~~l--~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L 183 (722)
.++.+|+++|.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 4789999999887 5667777 8999999999999876655 55788899999988888755 67777888888888
Q ss_pred ECCCccccCCCCcCCCCCCccceeecccC-CCCCC-CCccCCCCCCCcEEECcCC-CCCCCCcchhccCCC-CCcEEEcc
Q 004953 184 HMNNNSISGQIPPELSRLPSLVHMLLDNN-NLTGY-LPPELSELPKLLILQLDNN-NFEGTTIPASYSNMS-KLLKLSLR 259 (722)
Q Consensus 184 ~L~~N~l~~~~~~~l~~l~~L~~L~L~~N-~l~~~-~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~l~-~L~~L~L~ 259 (722)
++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++..++..+..++ +|++|+++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 88888777666666666777777777776 45542 3444555666666666666 554311344445555 55555555
Q ss_pred CCCCccCCCCCCCCCCccEEEccCCCCC-ccCCCcc-ccCCcCEEEccCCc-CcccCCccCCCCCCCCEEeCCCCcCccc
Q 004953 260 NCSLQGPMPDLSRIPNLGYLDLSSNQLN-GSIPPGR-LSLNITTIKLSNNK-LTGTIPSNFSGLPRLQRLFIANNSLSGS 336 (722)
Q Consensus 260 ~N~l~~~~~~l~~l~~L~~L~Ls~N~l~-~~ip~~~-~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 336 (722)
+|.+ .++ +.+|... ..++|++|++++|. +++..+..+..+++|++|++++|. +.
T Consensus 204 ~~~~---------------------~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~--~~ 260 (336)
T 2ast_B 204 GYRK---------------------NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY--DI 260 (336)
T ss_dssp SCGG---------------------GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT--TC
T ss_pred CCcc---------------------cCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC--CC
Confidence 5421 222 1222211 12467777777777 666667788899999999999996 23
Q ss_pred CChhhhhhccCCCCcccEEEccCCcCCCCCCCC-CC-CCceEEEccCCcCcCCCC
Q 004953 337 IPSSIWQSRTLNATETFILDFQNNNLTNISGSF-NI-PPNVTVRLRGNPFCLNTN 389 (722)
Q Consensus 337 ip~~~~~~~~l~~~~L~~L~ls~N~l~~~~~~~-~~-~~l~~l~l~~N~l~~~~~ 389 (722)
.+..+..+. .+++|+.|++++| ++.. .+ .+ ..+..|++++|.+++..+
T Consensus 261 ~~~~~~~l~--~~~~L~~L~l~~~-i~~~--~~~~l~~~l~~L~l~~n~l~~~~~ 310 (336)
T 2ast_B 261 IPETLLELG--EIPTLKTLQVFGI-VPDG--TLQLLKEALPHLQINCSHFTTIAR 310 (336)
T ss_dssp CGGGGGGGG--GCTTCCEEECTTS-SCTT--CHHHHHHHSTTSEESCCCSCCTTC
T ss_pred CHHHHHHHh--cCCCCCEEeccCc-cCHH--HHHHHHhhCcceEEecccCccccC
Confidence 333222221 2578999999999 4321 11 12 235566789999988764
No 93
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=2.4e-20 Score=210.17 Aligned_cols=213 Identities=29% Similarity=0.380 Sum_probs=138.3
Q ss_pred CCCC-CCCCCCC---CCcee-ecCCCCCCCCccceeEEEcCCCCCccccCccccCCCCCCEEECCCCCCccCCCccccCC
Q 004953 55 SNWN-RGDPCTS---NWTGV-LCFNTTMDDGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNI 129 (722)
Q Consensus 55 ~~w~-~~~~C~~---~w~gv-~C~~~~~~~~~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l 129 (722)
.+|. ..++|.. .|.|+ .|.. .+++.|++++|++++ +|..+. ++|++|+|++|.|+ .+| ..+
T Consensus 34 ~~W~~~~~~~~~~~~~~~~l~~C~~-------~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l 99 (571)
T 3cvr_A 34 DKWEKQALPGENRNEAVSLLKECLI-------NQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELP 99 (571)
T ss_dssp HHHHTTCCTTCCHHHHHHHHHHHHH-------TTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCC
T ss_pred HHHhccCCccccccchhhhcccccc-------CCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---ccc
Confidence 3453 3456743 58888 6743 368999999999987 666553 78999999999988 566 457
Q ss_pred CCCCEEeccCCcCCCCCCccCCCCCCCcEEEcccCCCCCCCchhhcCcCCCCEEECCCccccCCCCcCCCCCCccceeec
Q 004953 130 KSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLL 209 (722)
Q Consensus 130 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L 209 (722)
++|++|+|++|+|++ +|. +.+ +|++|+|++|++++ +|. .+++|+.|++++|.+++ +|. .+++|++|++
T Consensus 100 ~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L 167 (571)
T 3cvr_A 100 ASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSV 167 (571)
T ss_dssp TTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEEC
T ss_pred CCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEEC
Confidence 888999999998886 666 554 88888888888876 444 57778888888888775 444 4567777777
Q ss_pred ccCCCCCCCCccCCCCCCCcEEECcCCCCCCCCcchhccCCCCCcEEEccCCCCccCCCCCCCCCCccEEEccCCCCCcc
Q 004953 210 DNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLDLSSNQLNGS 289 (722)
Q Consensus 210 ~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~l~~l~~L~~L~Ls~N~l~~~ 289 (722)
++|++++ +|. +. ++|+.|++++|.|+ .+|. +.. +| ....+.|+.|+|++|+|+ .
T Consensus 168 s~N~L~~-lp~-l~--~~L~~L~Ls~N~L~--~lp~-~~~--~L----------------~~~~~~L~~L~Ls~N~l~-~ 221 (571)
T 3cvr_A 168 RNNQLTF-LPE-LP--ESLEALDVSTNLLE--SLPA-VPV--RN----------------HHSEETEIFFRCRENRIT-H 221 (571)
T ss_dssp CSSCCSC-CCC-CC--TTCCEEECCSSCCS--SCCC-CC--------------------------CCEEEECCSSCCC-C
T ss_pred CCCCCCC-cch-hh--CCCCEEECcCCCCC--chhh-HHH--hh----------------hcccccceEEecCCCcce-e
Confidence 7777775 444 44 67777777777776 3444 332 33 001112255555555555 4
Q ss_pred CCCcccc-CCcCEEEccCCcCcccCCccCCC
Q 004953 290 IPPGRLS-LNITTIKLSNNKLTGTIPSNFSG 319 (722)
Q Consensus 290 ip~~~~~-~~L~~L~L~~N~l~~~~~~~~~~ 319 (722)
+|...+. ++|+.|+|++|.+++.+|..+..
T Consensus 222 lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 222 IPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp CCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 5543222 45666666666666655555544
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.83 E-value=4.9e-20 Score=196.86 Aligned_cols=241 Identities=18% Similarity=0.197 Sum_probs=143.7
Q ss_pred CEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEEcccCCCCCCCc-hhhcCcCCCCE-EECC
Q 004953 109 TILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLP-KSFANLNKTRH-FHMN 186 (722)
Q Consensus 109 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~-L~L~ 186 (722)
++++.++++++ .+|..+ .+++++|+|++|+|+...+..|.++++|++|+|++|++.+.+| ..|.+++++++ +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 45677777777 566555 3567777777777775555567777777777777777655433 45666666554 4445
Q ss_pred CccccCCCCcCCCCCCccceeecccCCCCCCCCccCCCCCCCcEEECcCCCCCCCCcchhccCCCCCcEEEccCCCCccC
Q 004953 187 NNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGP 266 (722)
Q Consensus 187 ~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 266 (722)
.|+++...|..|..+++|++|++++|+++...+..+....++..|++.++ +++...
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~------------------------~~i~~l 144 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN------------------------INIHTI 144 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESC------------------------TTCCEE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccc------------------------cccccc
Confidence 56666555666666666666666666666544444444445555555332 222222
Q ss_pred CC-CCCCC-CCccEEEccCCCCCccCCCcccc-CCcCEEEccC-CcCcccCCccCCCCCCCCEEeCCCCcCcccCChhhh
Q 004953 267 MP-DLSRI-PNLGYLDLSSNQLNGSIPPGRLS-LNITTIKLSN-NKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIW 342 (722)
Q Consensus 267 ~~-~l~~l-~~L~~L~Ls~N~l~~~ip~~~~~-~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ip~~~~ 342 (722)
.+ .+..+ ..++.|++++|+|+ .+|...+. .+|+.|++++ |.++...+..|..+++|++|+|++|+|+ .+|...
T Consensus 145 ~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~~- 221 (350)
T 4ay9_X 145 ERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYG- 221 (350)
T ss_dssp CTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSSS-
T ss_pred cccchhhcchhhhhhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChhh-
Confidence 21 12222 24566666666666 45444333 4667777653 5565555566778888888888888887 555432
Q ss_pred hhccCCCCcccEEEccC-CcCCCCCCCCCCCCceEEEccCCcCc
Q 004953 343 QSRTLNATETFILDFQN-NNLTNISGSFNIPPNVTVRLRGNPFC 385 (722)
Q Consensus 343 ~~~~l~~~~L~~L~ls~-N~l~~~~~~~~~~~l~~l~l~~N~l~ 385 (722)
..+|+.|.+.+ ++++.+|+--.+++|+.+++.++..|
T Consensus 222 ------~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~~~~c 259 (350)
T 4ay9_X 222 ------LENLKKLRARSTYNLKKLPTLEKLVALMEASLTYPSHC 259 (350)
T ss_dssp ------CTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSCHHHH
T ss_pred ------hccchHhhhccCCCcCcCCCchhCcChhhCcCCCCccc
Confidence 13455555443 45666665347788888888754433
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=1.7e-19 Score=203.17 Aligned_cols=188 Identities=32% Similarity=0.420 Sum_probs=114.9
Q ss_pred CCCEEeccCCcCCCCCCccCCCCCCCcEEEcccCCCCCCCchhhcCcCCCCEEECCCccccCCCCcCCCCCCccceeecc
Q 004953 131 SLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLD 210 (722)
Q Consensus 131 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~ 210 (722)
+|+.|+|++|.+++ +|..+. ++|++|+|++|.|+ .+| ..+++|++|++++|.+++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 44444444444443 333221 34444444444444 233 223445555555555544 333 332 55555555
Q ss_pred cCCCCCCCCccCCCCCCCcEEECcCCCCCCCCcchhccCCCCCcEEEccCCCCccCCCCCCCCCCccEEEccCCCCCccC
Q 004953 211 NNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLDLSSNQLNGSI 290 (722)
Q Consensus 211 ~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~l~~l~~L~~L~Ls~N~l~~~i 290 (722)
+|++++ +|. .+++|+.|++++|.+++ +|. .+++|+.|+|++|++++... +. ++|+.|+|++|+|+ .+
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM--LPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc--CCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCC-ch
Confidence 555554 333 45666666666666653 443 45667777777777766333 43 67888888888887 67
Q ss_pred CCccccCCc-------CEEEccCCcCcccCCccCCCCCCCCEEeCCCCcCcccCChhhhhhc
Q 004953 291 PPGRLSLNI-------TTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSR 345 (722)
Q Consensus 291 p~~~~~~~L-------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~ 345 (722)
|. +..+| +.|+|++|+|+ .+|..+..+++|+.|+|++|++++.+|..+..+.
T Consensus 196 p~--~~~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 196 PA--VPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp CC--CC--------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred hh--HHHhhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 66 33467 99999999999 4677777899999999999999999999988764
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=1.6e-19 Score=177.83 Aligned_cols=152 Identities=17% Similarity=0.219 Sum_probs=96.7
Q ss_pred CEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEEcccCCCCCCCchhhcCcCCCCEEECCCc
Q 004953 109 TILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNN 188 (722)
Q Consensus 109 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 188 (722)
+.++++++.++ .+|..+ .++|++|++++|++++..+..|..+++|++|++++|++++..+..|.++++|++|++++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 56777777776 445433 357777777777777666666777777777777777777665666677777777777777
Q ss_pred cccCCCCcCCCCCCccceeecccCCCCCCCCccCCCCCCCcEEECcCCCCCCCCcchhccCCCCCcEEEccCCCCc
Q 004953 189 SISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQ 264 (722)
Q Consensus 189 ~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 264 (722)
.+++..+..|..+++|++|++++|++++..+..+..+++|+.|++++|.+++ ..+..+..+++|+.|++++|.+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSCCBC
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccce-eCHHHhccCCCccEEEecCCCee
Confidence 7765555556666666666666666665555555666666666666666654 12233444555555555555443
No 97
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=2.7e-19 Score=177.85 Aligned_cols=161 Identities=20% Similarity=0.229 Sum_probs=119.6
Q ss_pred CCCCCCCCceeecCCCCCCCCccceeEEEcCCCCCccccCccccCCCCCCEEECCCCCCccCCCccccCCCCCCEEeccC
Q 004953 60 GDPCTSNWTGVLCFNTTMDDGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNG 139 (722)
Q Consensus 60 ~~~C~~~w~gv~C~~~~~~~~~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 139 (722)
...|.|.|..+.|.+ ++++ .+|..+. ++|++|+|++|.|++..+..|..+++|++|+|++
T Consensus 6 P~~C~C~~~~v~c~~-----------------~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~ 65 (220)
T 2v9t_B 6 PAACTCSNNIVDCRG-----------------KGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSN 65 (220)
T ss_dssp CTTSEEETTEEECTT-----------------SCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCS
T ss_pred CCCCEECCCEEEcCC-----------------CCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCC
Confidence 445777777777743 3343 2344333 5788888888888877777788888888888888
Q ss_pred CcCCCCCCccCCCCCCCcEEEcccCCCCCCCchhhcCcCCCCEEECCCccccCCCCcCCCCCCccceeecccCCCCCCCC
Q 004953 140 NELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLP 219 (722)
Q Consensus 140 n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~ 219 (722)
|++++..|..|.++++|++|+|++|+++...+..|.++++|++|+|++|.+++..+..|..+++|++|++++|++++..+
T Consensus 66 N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 145 (220)
T 2v9t_B 66 NQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK 145 (220)
T ss_dssp SCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH
Confidence 88887778888888888888888888886666667778888888888888877777777777777777777777776666
Q ss_pred ccCCCCCCCcEEECcCCCCCC
Q 004953 220 PELSELPKLLILQLDNNNFEG 240 (722)
Q Consensus 220 ~~l~~l~~L~~L~l~~N~l~~ 240 (722)
..|..+++|+.|++++|.+..
T Consensus 146 ~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 146 GTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp TTTTTCTTCCEEECCSSCEEC
T ss_pred HHHhCCCCCCEEEeCCCCcCC
Confidence 667777777777777777653
No 98
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=8.3e-19 Score=175.48 Aligned_cols=156 Identities=22% Similarity=0.278 Sum_probs=123.6
Q ss_pred CCCCceeecCCCCCCCCccceeEEEcCCCCCccccCccccCCCCCCEEECCCCCCccCCCccccCCCCCCEEeccCCcCC
Q 004953 64 TSNWTGVLCFNTTMDDGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELT 143 (722)
Q Consensus 64 ~~~w~gv~C~~~~~~~~~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 143 (722)
.|.|++|.|.+. .++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|+++
T Consensus 18 ~Cs~~~v~c~~~-----------------~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~ 77 (229)
T 3e6j_A 18 SCSGTTVDCRSK-----------------RHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG 77 (229)
T ss_dssp EEETTEEECTTS-----------------CCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EEeCCEeEccCC-----------------CcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC
Confidence 347999999643 222 3343333 78888999999888888888888888999999999888
Q ss_pred CCCCccCCCCCCCcEEEcccCCCCCCCchhhcCcCCCCEEECCCccccCCCCcCCCCCCccceeecccCCCCCCCCccCC
Q 004953 144 GSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELS 223 (722)
Q Consensus 144 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 223 (722)
...+..|..+++|++|+|++|++++..+..|..+++|++|+|++|.++ .+|..+..+++|++|++++|++++..+..+.
T Consensus 78 ~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 156 (229)
T 3e6j_A 78 ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFD 156 (229)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTT
T ss_pred CcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHh
Confidence 666677788888888888888888777777888888888888888887 5677778888888888888888876666778
Q ss_pred CCCCCcEEECcCCCCCC
Q 004953 224 ELPKLLILQLDNNNFEG 240 (722)
Q Consensus 224 ~l~~L~~L~l~~N~l~~ 240 (722)
.+++|+.|++++|.++.
T Consensus 157 ~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 157 RLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp TCTTCCEEECTTSCBCT
T ss_pred CCCCCCEEEeeCCCccC
Confidence 88888888888888765
No 99
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=6.4e-19 Score=175.11 Aligned_cols=152 Identities=18% Similarity=0.201 Sum_probs=127.4
Q ss_pred EEEcCCCCCccccCccccCCCCCCEEECCCCCCccCCC-ccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEEcccC
Q 004953 86 ELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIP-KEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQN 164 (722)
Q Consensus 86 ~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N 164 (722)
.++++++.++. +|..+. +.+++|+|++|.+++..| ..|.++++|++|+|++|++++..+..|.++++|++|+|++|
T Consensus 15 ~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 45555666653 555553 457899999999997755 45789999999999999999887888999999999999999
Q ss_pred CCCCCCchhhcCcCCCCEEECCCccccCCCCcCCCCCCccceeecccCCCCCCCCccCCCCCCCcEEECcCCCCCC
Q 004953 165 YISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEG 240 (722)
Q Consensus 165 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~ 240 (722)
.+++..+..|.++++|++|+|++|.+++..|..|..+++|++|++++|++++..|..|..+++|+.|++++|.+++
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 9998888889999999999999999998888888888999999999999888888888888888888888888875
No 100
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.79 E-value=3e-21 Score=221.42 Aligned_cols=298 Identities=13% Similarity=0.078 Sum_probs=166.6
Q ss_pred ccceeEEEcCCCCCccc----cCccccCCCCCCEEECCCCCCcc----CCCccccCCCCCCEEeccCCcCCCCCCccCCC
Q 004953 81 YLHLRELQLLNLNLSGN----LSPEIGRLSYLTILDFMWNKISG----SIPKEIGNIKSLELLLLNGNELTGSLPEELGY 152 (722)
Q Consensus 81 ~~~l~~L~L~~~~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~ 152 (722)
+++|+.|+|++|.+++. ++..+..+++|++|++++|.+++ .++..+.++++|++|++++|.+.+ +|..+..
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~ 241 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKA 241 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHH
T ss_pred CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhh
Confidence 46899999999988765 33345678899999999998873 344455678899999999988874 5566777
Q ss_pred CCCCcEEEcccCCCC---CCCchhhcCcCCCCEEECCCccccCCCCcCCCCCCccceeecccCCCCCCCC-ccCCCCCCC
Q 004953 153 LPKLDRIQIDQNYIS---GSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLP-PELSELPKL 228 (722)
Q Consensus 153 l~~L~~L~L~~N~l~---~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-~~l~~l~~L 228 (722)
+++|++|+++..... ...+..+..+++|+.|+++++.. ..+|..+..+++|++|++++|.+++... ..+..+++|
T Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L 320 (592)
T 3ogk_B 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNL 320 (592)
T ss_dssp CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTC
T ss_pred hhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCC
Confidence 777888877653222 22334455666666666666432 2345555566667777776666553322 224556666
Q ss_pred cEEECcCCCCCCCCcchhccCCCCCcEEEccC-----------CCCccCC-CC-CCCCCCccEEEccCCCCCccCCCccc
Q 004953 229 LILQLDNNNFEGTTIPASYSNMSKLLKLSLRN-----------CSLQGPM-PD-LSRIPNLGYLDLSSNQLNGSIPPGRL 295 (722)
Q Consensus 229 ~~L~l~~N~l~~~~~~~~~~~l~~L~~L~L~~-----------N~l~~~~-~~-l~~l~~L~~L~Ls~N~l~~~ip~~~~ 295 (722)
+.|+++ +.+....++.....+++|++|++++ |.+++.. .. ...+++|++|+++.|.+++..+....
T Consensus 321 ~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~ 399 (592)
T 3ogk_B 321 EVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIG 399 (592)
T ss_dssp CEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHH
T ss_pred CEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHH
Confidence 666666 3332212333344556666666662 3443211 11 22355666666666655543322211
Q ss_pred --cCCcCEEEcc----CCcCccc-----CCccCCCCCCCCEEeCCCC--cCcccCChhhhhhccCCCCcccEEEccCCcC
Q 004953 296 --SLNITTIKLS----NNKLTGT-----IPSNFSGLPRLQRLFIANN--SLSGSIPSSIWQSRTLNATETFILDFQNNNL 362 (722)
Q Consensus 296 --~~~L~~L~L~----~N~l~~~-----~~~~~~~l~~L~~L~L~~N--~l~~~ip~~~~~~~~l~~~~L~~L~ls~N~l 362 (722)
.++|+.|+++ .|.+++. ++..+..+++|+.|+++++ .+++..+..+.. .+++|+.|++++|++
T Consensus 400 ~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~----~~~~L~~L~L~~n~l 475 (592)
T 3ogk_B 400 TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQ----YSPNVRWMLLGYVGE 475 (592)
T ss_dssp HHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHH----SCTTCCEEEECSCCS
T ss_pred hhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHH----hCccceEeeccCCCC
Confidence 2356666664 4555542 2222444555666666532 244444443332 134555666666655
Q ss_pred CCC--CCCC-CCCCceEEEccCCcCc
Q 004953 363 TNI--SGSF-NIPPNVTVRLRGNPFC 385 (722)
Q Consensus 363 ~~~--~~~~-~~~~l~~l~l~~N~l~ 385 (722)
++. +... .+++|+.|++++|+++
T Consensus 476 ~~~~~~~~~~~~~~L~~L~l~~n~l~ 501 (592)
T 3ogk_B 476 SDEGLMEFSRGCPNLQKLEMRGCCFS 501 (592)
T ss_dssp SHHHHHHHHTCCTTCCEEEEESCCCB
T ss_pred CHHHHHHHHhcCcccCeeeccCCCCc
Confidence 541 1111 3455556666665553
No 101
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.79 E-value=1.6e-21 Score=223.64 Aligned_cols=296 Identities=13% Similarity=0.026 Sum_probs=220.3
Q ss_pred ceeEEEcCCCC-Ccc-ccCccccCCCCCCEEECCCCCCccC----CCccccCCCCCCEEeccCCcCCCC----CCccCCC
Q 004953 83 HLRELQLLNLN-LSG-NLSPEIGRLSYLTILDFMWNKISGS----IPKEIGNIKSLELLLLNGNELTGS----LPEELGY 152 (722)
Q Consensus 83 ~l~~L~L~~~~-l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~ 152 (722)
+|+.|+++++. ++. .++..+.++++|++|+|++|.+++. ++..+.++++|++|++++|.+++. ++..+.+
T Consensus 139 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~ 218 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARN 218 (592)
T ss_dssp GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHH
T ss_pred cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhh
Confidence 39999999886 221 1223345789999999999998766 334567899999999999999733 3444567
Q ss_pred CCCCcEEEcccCCCCCCCchhhcCcCCCCEEECCCcccc---CCCCcCCCCCCccceeecccCCCCCCCCccCCCCCCCc
Q 004953 153 LPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSIS---GQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLL 229 (722)
Q Consensus 153 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~---~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~ 229 (722)
+++|++|++++|.+.+ ++..+.++++|++|+++.+... ...+..+..+++|+.|+++++.. ..+|..+..+++|+
T Consensus 219 ~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~ 296 (592)
T 3ogk_B 219 CRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIR 296 (592)
T ss_dssp CTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCC
T ss_pred CCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCc
Confidence 8999999999999885 6788999999999999864433 23445678889999999998643 35677788899999
Q ss_pred EEECcCCCCCCCCcchhccCCCCCcEEEccCCCCcc-CCCC-CCCCCCccEEEcc-----------CCCCCccCCCc--c
Q 004953 230 ILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQG-PMPD-LSRIPNLGYLDLS-----------SNQLNGSIPPG--R 294 (722)
Q Consensus 230 ~L~l~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~-l~~l~~L~~L~Ls-----------~N~l~~~ip~~--~ 294 (722)
+|++++|.+++..++..+..+++|+.|+++ +.+.+ ..+. ...+++|++|+++ .|.+++..... .
T Consensus 297 ~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~ 375 (592)
T 3ogk_B 297 KLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQ 375 (592)
T ss_dssp EEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHH
T ss_pred EEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHh
Confidence 999999998653333557889999999999 44443 2222 3567899999999 35665321111 1
Q ss_pred ccCCcCEEEccCCcCcccCCccCCC-CCCCCEEeCC----CCcCccc-----CChhhhhhccCCCCcccEEEccCC--cC
Q 004953 295 LSLNITTIKLSNNKLTGTIPSNFSG-LPRLQRLFIA----NNSLSGS-----IPSSIWQSRTLNATETFILDFQNN--NL 362 (722)
Q Consensus 295 ~~~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~L~----~N~l~~~-----ip~~~~~~~~l~~~~L~~L~ls~N--~l 362 (722)
..++|++|+++.|.+++..+..+.. +++|+.|+++ .|++++. ++..+.. +++|+.|+++++ .+
T Consensus 376 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~-----~~~L~~L~L~~~~~~l 450 (592)
T 3ogk_B 376 GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIG-----CKKLRRFAFYLRQGGL 450 (592)
T ss_dssp HCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHH-----CTTCCEEEEECCGGGC
T ss_pred hCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHh-----CCCCCEEEEecCCCCc
Confidence 2369999999999999877777765 8999999996 7888863 2222332 478999999854 36
Q ss_pred CCC-CCCC--CCCCceEEEccCCcCcC
Q 004953 363 TNI-SGSF--NIPPNVTVRLRGNPFCL 386 (722)
Q Consensus 363 ~~~-~~~~--~~~~l~~l~l~~N~l~~ 386 (722)
++. ...+ ..++|++|++++|++++
T Consensus 451 ~~~~~~~~~~~~~~L~~L~L~~n~l~~ 477 (592)
T 3ogk_B 451 TDLGLSYIGQYSPNVRWMLLGYVGESD 477 (592)
T ss_dssp CHHHHHHHHHSCTTCCEEEECSCCSSH
T ss_pred cHHHHHHHHHhCccceEeeccCCCCCH
Confidence 652 2222 47889999999999865
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=2.4e-18 Score=178.65 Aligned_cols=169 Identities=29% Similarity=0.391 Sum_probs=83.8
Q ss_pred CCCCCEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEEcccCCCCCCCchhhcCcCCCCEEE
Q 004953 105 LSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFH 184 (722)
Q Consensus 105 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 184 (722)
+++|++|++++|.+... + .+..+++|++|++++|++++..+ +..+++|++|++++|.+++. ..+..+++|++|+
T Consensus 45 l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 118 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLS 118 (291)
T ss_dssp HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEEE
T ss_pred cCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEEE
Confidence 34444444444444322 1 24444444444444444443222 44444444444444444431 1244444555555
Q ss_pred CCCccccCCCCcCCCCCCccceeecccCCCCCCCCccCCCCCCCcEEECcCCCCCCCCcchhccCCCCCcEEEccCCCCc
Q 004953 185 MNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQ 264 (722)
Q Consensus 185 L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 264 (722)
+++|.+++. ..+..+++|++|++++|++++. ..+..+++|+.|++++|.+++ ++. +..+++|+.|++++|.++
T Consensus 119 L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~--~~~-l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 119 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD--IVP-LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp CTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCC
T ss_pred CCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcccc--chh-hcCCCccCEEECCCCcCC
Confidence 555544432 2344455555555555555433 345555566666666666553 222 555666666666666665
Q ss_pred cCCCCCCCCCCccEEEccCCCCC
Q 004953 265 GPMPDLSRIPNLGYLDLSSNQLN 287 (722)
Q Consensus 265 ~~~~~l~~l~~L~~L~Ls~N~l~ 287 (722)
+. +.+..+++|+.|++++|+++
T Consensus 192 ~l-~~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 192 DL-RALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp BC-GGGTTCTTCSEEEEEEEEEE
T ss_pred CC-hhhccCCCCCEEECcCCccc
Confidence 43 34566666777777777665
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=1.9e-18 Score=179.44 Aligned_cols=171 Identities=23% Similarity=0.404 Sum_probs=79.3
Q ss_pred cCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEEcccCCCCCCCchhhcCcCCCCEEECCCccccCCCCcCCCCCCccce
Q 004953 127 GNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVH 206 (722)
Q Consensus 127 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~ 206 (722)
..+++|++|++++|.+... + .+..+++|++|++++|++++..+ +.++++|++|++++|.+++. ..+..+++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCE
T ss_pred hhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCE
Confidence 3444555555555554422 2 24444555555555555543322 44455555555555554431 12444555555
Q ss_pred eecccCCCCCCCCccCCCCCCCcEEECcCCCCCCCCcchhccCCCCCcEEEccCCCCccCCCCCCCCCCccEEEccCCCC
Q 004953 207 MLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLDLSSNQL 286 (722)
Q Consensus 207 L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~l~~l~~L~~L~Ls~N~l 286 (722)
|++++|++++. +.+..+++|+.|++++|.+++ + ..+..+++|+.|++++|++++..+ +..+++|+.|++++|.+
T Consensus 117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~--~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITD--I-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCC--C-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCc--c-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcC
Confidence 55555555432 234444555555555555543 1 334445555555555555544333 44445555555555555
Q ss_pred CccCCCccccCCcCEEEccCCcCc
Q 004953 287 NGSIPPGRLSLNITTIKLSNNKLT 310 (722)
Q Consensus 287 ~~~ip~~~~~~~L~~L~L~~N~l~ 310 (722)
+ .++.....++|+.|++++|+++
T Consensus 191 ~-~l~~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 191 S-DLRALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp C-BCGGGTTCTTCSEEEEEEEEEE
T ss_pred C-CChhhccCCCCCEEECcCCccc
Confidence 4 2332222234555555555544
No 104
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=5.8e-19 Score=189.35 Aligned_cols=176 Identities=21% Similarity=0.266 Sum_probs=145.5
Q ss_pred EEEcCCCCCccccCccccCCCCCCEEECCCCCCccCCCcccc-CCCCCCEEeccCCcCCCCCCccCCCCCCCcEEEcccC
Q 004953 86 ELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIG-NIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQN 164 (722)
Q Consensus 86 ~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N 164 (722)
.+++++++++. +|..+. +.++.|+|++|+|++..+..|. ++++|++|+|++|+|++..+..|.++++|++|+|++|
T Consensus 22 ~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 22 ILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp EEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 45555566653 455443 4588999999999987777787 8999999999999999888888999999999999999
Q ss_pred CCCCCCchhhcCcCCCCEEECCCccccCCCCcCCCCCCccceeecccCCCCCCCCccC---CCCCCCcEEECcCCCCCCC
Q 004953 165 YISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPEL---SELPKLLILQLDNNNFEGT 241 (722)
Q Consensus 165 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l---~~l~~L~~L~l~~N~l~~~ 241 (722)
++++..+..|.++++|++|+|++|.+++..+..|..+++|++|+|++|+++...+..| ..+++|+.|+|++|+|++.
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 9998888889999999999999999998888899999999999999999997555555 5789999999999999852
Q ss_pred CcchhccCCCC--CcEEEccCCCCcc
Q 004953 242 TIPASYSNMSK--LLKLSLRNCSLQG 265 (722)
Q Consensus 242 ~~~~~~~~l~~--L~~L~L~~N~l~~ 265 (722)
.+..+..++. |+.|+|++|.+..
T Consensus 179 -~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 179 -PLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp -CHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred -CHHHhhhccHhhcceEEecCCCccC
Confidence 3456777776 4889999999874
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=5.8e-18 Score=168.19 Aligned_cols=153 Identities=21% Similarity=0.307 Sum_probs=119.5
Q ss_pred CEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEEcccCCCCCCCchhhcCcCCCCEEECCCc
Q 004953 109 TILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNN 188 (722)
Q Consensus 109 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 188 (722)
+.++++++.++ .+|..+. ++|++|+|++|+|++..+..|..+++|++|+|++|++++..|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 57888888887 5666554 68899999999988777778888888899998888888888888888888888888888
Q ss_pred cccCCCCcCCCCCCccceeecccCCCCCCCCccCCCCCCCcEEECcCCCCCCCCcchhccCCCCCcEEEccCCCCcc
Q 004953 189 SISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQG 265 (722)
Q Consensus 189 ~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 265 (722)
.++...+..|..+++|++|++++|++++..+..|..+++|+.|++++|.+++ ..+..+..+++|+.|+|++|.+..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT-IAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCE-ECHHHHhCCCCCCEEEeCCCCcCC
Confidence 8886666667788888888888888887777777778888888888887775 234456666666666666666653
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=2.8e-18 Score=184.00 Aligned_cols=174 Identities=22% Similarity=0.282 Sum_probs=94.2
Q ss_pred CEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCC-CCCCCcEEEcccCCCCCCCchhhcCcCCCCEEECCC
Q 004953 109 TILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELG-YLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNN 187 (722)
Q Consensus 109 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 187 (722)
+.++++++.++ .+|..+. ..+++|+|++|+|++..+..+. ++++|++|+|++|+|++..+..|.++++|++|+|++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 34555555555 3444332 3355666666666555555454 556666666666666555555555666666666666
Q ss_pred ccccCCCCcCCCCCCccceeecccCCCCCCCCccCCCCCCCcEEECcCCCCCCCCcchh-c---cCCCCCcEEEccCCCC
Q 004953 188 NSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPAS-Y---SNMSKLLKLSLRNCSL 263 (722)
Q Consensus 188 N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~-~---~~l~~L~~L~L~~N~l 263 (722)
|+++...+..|..+++|++|+|++|++++..+..|..+++|+.|+|++|.+++ +|.. + ..+++|+.|+|++|+|
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~--l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR--FPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS--CCGGGTC----CTTCCEEECCSSCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe--eCHHHhcCcccCCcCCEEECCCCCC
Confidence 66655555555556666666666666655555555566666666666666553 3322 2 3455566666666665
Q ss_pred ccCCC-CCCCCCC--ccEEEccCCCCC
Q 004953 264 QGPMP-DLSRIPN--LGYLDLSSNQLN 287 (722)
Q Consensus 264 ~~~~~-~l~~l~~--L~~L~Ls~N~l~ 287 (722)
++..+ .+..++. ++.|+|++|.+.
T Consensus 176 ~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 176 KKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CccCHHHhhhccHhhcceEEecCCCcc
Confidence 54332 1333443 255566666554
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=5.7e-18 Score=168.25 Aligned_cols=153 Identities=22% Similarity=0.289 Sum_probs=113.2
Q ss_pred CEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCC-ccCCCCCCCcEEEcccCCCCCCCchhhcCcCCCCEEECCC
Q 004953 109 TILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLP-EELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNN 187 (722)
Q Consensus 109 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 187 (722)
+.+++++|.++ .+|..+. ..+++|+|++|++++..+ ..|..+++|++|+|++|++++..+..|.++++|++|+|++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 57888888887 4666553 456788888888886644 4467788888888888888877777788888888888888
Q ss_pred ccccCCCCcCCCCCCccceeecccCCCCCCCCccCCCCCCCcEEECcCCCCCCCCcchhccCCCCCcEEEccCCCCcc
Q 004953 188 NSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQG 265 (722)
Q Consensus 188 N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 265 (722)
|.+++..+..|..+++|++|++++|++++..|..|..+++|+.|++++|++++ ..|..+..+++|+.|+|++|.+.+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITT-VAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCC-BCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCE-ECHHHhcCCCCCCEEEecCcCCcC
Confidence 88877777777777788888888887777777777777777777777777775 245666666666666666666654
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=3.2e-18 Score=194.87 Aligned_cols=189 Identities=27% Similarity=0.371 Sum_probs=111.3
Q ss_pred ceeEEEcCCCCCccccCccccCCCCCCEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEEcc
Q 004953 83 HLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQID 162 (722)
Q Consensus 83 ~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 162 (722)
.+..+.+..+.+.+..+ +..+++|+.|++++|.+.. +| .+..+++|++|+|++|.+++..| +..+++|+.|+|+
T Consensus 22 ~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred HHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECc
Confidence 44455555555554432 4566677777777777663 23 46667777777777777765433 6666777777777
Q ss_pred cCCCCCCCchhhcCcCCCCEEECCCccccCCCCcCCCCCCccceeecccCCCCCCCCccCCCCCCCcEEECcCCCCCCCC
Q 004953 163 QNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTT 242 (722)
Q Consensus 163 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~ 242 (722)
+|.+++. ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|++++. ..+..+++|+.|+|++|.+++.
T Consensus 96 ~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~- 168 (605)
T 1m9s_A 96 ENKIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI- 168 (605)
T ss_dssp SSCCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC-
T ss_pred CCCCCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCc-
Confidence 7766642 2466666666666666666542 3455566666666666666543 4455566666666666666541
Q ss_pred cchhccCCCCCcEEEccCCCCccCCCCCCCCCCccEEEccCCCCC
Q 004953 243 IPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLDLSSNQLN 287 (722)
Q Consensus 243 ~~~~~~~l~~L~~L~L~~N~l~~~~~~l~~l~~L~~L~Ls~N~l~ 287 (722)
.| +..+++|+.|+|++|+|++. +.+..+++|+.|+|++|++.
T Consensus 169 ~~--l~~l~~L~~L~Ls~N~i~~l-~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 169 VP--LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp GG--GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEECCSEEEE
T ss_pred hh--hccCCCCCEEECcCCCCCCC-hHHccCCCCCEEEccCCcCc
Confidence 22 55555666666666655543 34555555555555555554
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=8.1e-18 Score=191.58 Aligned_cols=172 Identities=26% Similarity=0.342 Sum_probs=153.3
Q ss_pred ccceeEEEcCCCCCccccCccccCCCCCCEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEE
Q 004953 81 YLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQ 160 (722)
Q Consensus 81 ~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 160 (722)
+.+|+.|+++++.+... +.+..+++|+.|+|++|.+++..| +..+++|++|+|++|.+++ +| .+..+++|+.|+
T Consensus 42 L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLS 115 (605)
T ss_dssp HTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEE
T ss_pred CCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEE
Confidence 46799999999999754 368999999999999999997655 9999999999999999985 33 699999999999
Q ss_pred cccCCCCCCCchhhcCcCCCCEEECCCccccCCCCcCCCCCCccceeecccCCCCCCCCccCCCCCCCcEEECcCCCCCC
Q 004953 161 IDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEG 240 (722)
Q Consensus 161 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~ 240 (722)
|++|.+++. ..+..+++|+.|+|++|.+++. ..+..+++|++|+|++|++++..| +..+++|+.|+|++|.+++
T Consensus 116 Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 116 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp CTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred ecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC
Confidence 999999863 4689999999999999999975 678999999999999999997666 8999999999999999985
Q ss_pred CCcchhccCCCCCcEEEccCCCCccCC
Q 004953 241 TTIPASYSNMSKLLKLSLRNCSLQGPM 267 (722)
Q Consensus 241 ~~~~~~~~~l~~L~~L~L~~N~l~~~~ 267 (722)
+ ..+..+++|+.|+|++|++.+..
T Consensus 190 --l-~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 190 --L-RALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp --C-GGGTTCTTCSEEECCSEEEECCC
T ss_pred --C-hHHccCCCCCEEEccCCcCcCCc
Confidence 3 46899999999999999998644
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=2.6e-17 Score=164.57 Aligned_cols=150 Identities=22% Similarity=0.307 Sum_probs=86.8
Q ss_pred CEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEEcccCCCCCCCchhhcCcCCCCEEECCCc
Q 004953 109 TILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNN 188 (722)
Q Consensus 109 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 188 (722)
+.++.+++.++ .+|..+. ++|++|+|++|.+++..|..|..+++|++|+|++|+++...+..|..+++|++|+|++|
T Consensus 22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 55777777776 4555443 67777777777777666777777777777777777776555555666666666666666
Q ss_pred cccCCCCcCCCCCCccceeecccCCCCCCCCccCCCCCCCcEEECcCCCCCCCCcchhccCCCCCcEEEccCCCC
Q 004953 189 SISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSL 263 (722)
Q Consensus 189 ~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 263 (722)
.+++..+..|..+++|++|++++|+++ .+|..+..+++|+.|++++|++++. .+..+..+++|+.|++++|.+
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSI-PHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECTTSCB
T ss_pred cCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCcc-CHHHHhCCCCCCEEEeeCCCc
Confidence 666555545555555555555555555 3444444455555555555554431 222333344444444444333
No 111
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.74 E-value=4.5e-19 Score=206.91 Aligned_cols=215 Identities=19% Similarity=0.198 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHhcCCC-CCCCCCCCC-CCCCCCCCceeecCCCCCCCCccceeEEEcCCCCCccccCccccCCCCCCEE
Q 004953 34 PIEVSALRSIKKSLVDD-YSKLSNWNR-GDPCTSNWTGVLCFNTTMDDGYLHLRELQLLNLNLSGNLSPEIGRLSYLTIL 111 (722)
Q Consensus 34 ~~~~~~l~~~k~~l~~~-~~~l~~w~~-~~~C~~~w~gv~C~~~~~~~~~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L 111 (722)
..++++|+++...+..+ ...-..|.. ..++ +.|.++.+.. ++++.|+|..+.+... +..+ |+.+
T Consensus 131 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~-------~~~~~l~L~~n~~~~~-~~~~-----l~~l 196 (727)
T 4b8c_D 131 DCTKQALMEMADTLTDSKTAKKQQPTGDSTPS-GTATNSAVST-------PLTPKIELFANGKDEA-NQAL-----LQHK 196 (727)
T ss_dssp -CCCHHHHHHHHHHHHHHTTC-----------------------------------------------------------
T ss_pred ccchhhhhhhhhhcccccCcccCCCcCCCCcc-ccCCCceecC-------CccceEEeeCCCCCcc-hhhH-----hhcC
Confidence 34567888888776422 122345643 2333 2688877743 4789999998888763 3222 3344
Q ss_pred ECCCCCCcc---------CCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEEcccCCCCCCCchhhcCcCCCCE
Q 004953 112 DFMWNKISG---------SIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRH 182 (722)
Q Consensus 112 ~Ls~n~l~~---------~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 182 (722)
+|+.|.|.+ ..|..|..+++|+.|+|++|.+. .+|..+..+++|++|+|++|.|+ .+|..|.++++|++
T Consensus 197 ~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~ 274 (727)
T 4b8c_D 197 KLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRV 274 (727)
T ss_dssp -------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCE
T ss_pred ccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCE
Confidence 444444332 44666777777888888877777 56666667777777777777777 66777777777777
Q ss_pred EECCCccccCCCCcCCCCCCccceeecccCCCCCCCCccCCCCCCCcEEECcCCCCCCCCcchhccCCCC-CcEEEccCC
Q 004953 183 FHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSK-LLKLSLRNC 261 (722)
Q Consensus 183 L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~-L~~L~L~~N 261 (722)
|+|++|.|+ .+|..|..+++|++|+|++|.|+ .+|..|+.+++|+.|+|++|.+++ .+|..+..+.. +..|+|++|
T Consensus 275 L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~~~~~~~~l~l~~N 351 (727)
T 4b8c_D 275 LDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEK-QFLKILTEKSVTGLIFYLRDN 351 (727)
T ss_dssp EECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred EeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCC-CChHHHhhcchhhhHHhhccC
Confidence 777777777 55777777777777777777776 556667777777777777777776 35555543321 122455555
Q ss_pred CCccCC
Q 004953 262 SLQGPM 267 (722)
Q Consensus 262 ~l~~~~ 267 (722)
.+++.+
T Consensus 352 ~l~~~~ 357 (727)
T 4b8c_D 352 RPEIPL 357 (727)
T ss_dssp CCCCCC
T ss_pred cccCcC
Confidence 555443
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=2.3e-18 Score=176.08 Aligned_cols=165 Identities=20% Similarity=0.346 Sum_probs=90.1
Q ss_pred CCEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEEcccCCCCCCCchhhcCcCCCCEEECCC
Q 004953 108 LTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNN 187 (722)
Q Consensus 108 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 187 (722)
++.+++++|.+++.. .+..+++|++|++++|.++. ++ .+..+++|++|+|++|++++..+ +.++++|++|++++
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred HHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence 334444444444221 34444445555555544442 22 34444555555555555543322 45555555555555
Q ss_pred ccccCCCCcCCCCCCccceeecccCCCCCCCCccCCCCCCCcEEECcCCCCCCCCcchhccCCCCCcEEEccCCCCccCC
Q 004953 188 NSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPM 267 (722)
Q Consensus 188 N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 267 (722)
|++++. +. +.. ++|++|++++|++++. +.+..+++|+.|++++|++++ ++ .+..+++|+.|++++|++++.
T Consensus 95 N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~--~~-~l~~l~~L~~L~L~~N~i~~~- 165 (263)
T 1xeu_A 95 NRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS--IV-MLGFLSKLEVLDLHGNEITNT- 165 (263)
T ss_dssp SCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCB--CG-GGGGCTTCCEEECTTSCCCBC-
T ss_pred CccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCC--Ch-HHccCCCCCEEECCCCcCcch-
Confidence 555432 21 112 5666666666666543 246666777777777777764 23 566677777777777777655
Q ss_pred CCCCCCCCccEEEccCCCCC
Q 004953 268 PDLSRIPNLGYLDLSSNQLN 287 (722)
Q Consensus 268 ~~l~~l~~L~~L~Ls~N~l~ 287 (722)
+.+..+++|+.|++++|.++
T Consensus 166 ~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 166 GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp TTSTTCCCCCEEEEEEEEEE
T ss_pred HHhccCCCCCEEeCCCCccc
Confidence 55666777777777777766
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=1.7e-17 Score=161.90 Aligned_cols=131 Identities=17% Similarity=0.272 Sum_probs=63.8
Q ss_pred cCCCCCCEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEEcccCCCCCCCchhhcCcCCCCE
Q 004953 103 GRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRH 182 (722)
Q Consensus 103 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 182 (722)
..+++|++|++++|.++ .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|++++..+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 44555666666666665 333 4555566666666665443 1224555555555555555555444444555555555
Q ss_pred EECCCccccCCCCcCCCCCCccceeecccCC-CCCCCCccCCCCCCCcEEECcCCCCC
Q 004953 183 FHMNNNSISGQIPPELSRLPSLVHMLLDNNN-LTGYLPPELSELPKLLILQLDNNNFE 239 (722)
Q Consensus 183 L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~l~~l~~L~~L~l~~N~l~ 239 (722)
|++++|.+++..+..+..+++|++|++++|+ ++. ++ .+..+++|+.|++++|.++
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~ 172 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVH 172 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCC
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCc
Confidence 5555555544344444444444444444444 321 22 2334444444444444443
No 114
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.72 E-value=8e-20 Score=209.51 Aligned_cols=199 Identities=17% Similarity=0.202 Sum_probs=121.9
Q ss_pred ccceeEEEcCCCCCccccCcccc-CCCCCCEEECCCC-CCccC-CCccccCCCCCCEEeccCCcCCCCCCccC----CCC
Q 004953 81 YLHLRELQLLNLNLSGNLSPEIG-RLSYLTILDFMWN-KISGS-IPKEIGNIKSLELLLLNGNELTGSLPEEL----GYL 153 (722)
Q Consensus 81 ~~~l~~L~L~~~~l~~~~~~~~~-~l~~L~~L~Ls~n-~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~~----~~l 153 (722)
+++|+.|+++++.+++..+..+. .+++|++|+|++| .++.. ++..+.++++|++|+|++|.+++..+..+ ..+
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 35799999999988877766665 6889999999988 55532 34444578999999999998876544333 467
Q ss_pred CCCcEEEcccCC--CCCC-CchhhcCcCCCCEEECCCc-cccCCCCcCCCCCCccceeecccCC----------------
Q 004953 154 PKLDRIQIDQNY--ISGS-LPKSFANLNKTRHFHMNNN-SISGQIPPELSRLPSLVHMLLDNNN---------------- 213 (722)
Q Consensus 154 ~~L~~L~L~~N~--l~~~-~p~~~~~l~~L~~L~L~~N-~l~~~~~~~l~~l~~L~~L~L~~N~---------------- 213 (722)
++|++|++++|. +... ++..+.++++|++|++++| .+.+ ++..+..+++|++|+++.+.
T Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~ 262 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALS 262 (594)
T ss_dssp CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHH
T ss_pred CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccccCccchhhHHHHHHHHh
Confidence 799999999886 2211 1122345688999999888 3332 44445555566666544331
Q ss_pred ----------CCC----CCCccCCCCCCCcEEECcCCCCCCCCcchhccCCCCCcEEEccCCCCccC-CCC-CCCCCCcc
Q 004953 214 ----------LTG----YLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGP-MPD-LSRIPNLG 277 (722)
Q Consensus 214 ----------l~~----~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~-l~~l~~L~ 277 (722)
+.. .++..+..+++|+.|++++|.+++..+...+..+++|+.|++++| ++.. .+. ...+++|+
T Consensus 263 ~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~ 341 (594)
T 2p1m_B 263 GCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLR 341 (594)
T ss_dssp TCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCC
T ss_pred cCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCC
Confidence 111 112222245677777777776653222333456667777777666 3211 111 12345566
Q ss_pred EEEc
Q 004953 278 YLDL 281 (722)
Q Consensus 278 ~L~L 281 (722)
+|++
T Consensus 342 ~L~L 345 (594)
T 2p1m_B 342 ELRV 345 (594)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6655
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=2e-17 Score=161.28 Aligned_cols=152 Identities=22% Similarity=0.290 Sum_probs=132.8
Q ss_pred ccceeEEEcCCCCCccccCccccCCCCCCEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEE
Q 004953 81 YLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQ 160 (722)
Q Consensus 81 ~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 160 (722)
+++++.|++++|.++ .++ .+..+++|++|++++|.++ .+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 468999999999998 455 6999999999999999776 345799999999999999999987889999999999999
Q ss_pred cccCCCCCCCchhhcCcCCCCEEECCCcc-ccCCCCcCCCCCCccceeecccCCCCCCCCccCCCCCCCcEEECcCCCCC
Q 004953 161 IDQNYISGSLPKSFANLNKTRHFHMNNNS-ISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFE 239 (722)
Q Consensus 161 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~ 239 (722)
+++|.+++..+..+..+++|++|++++|. ++ .++ .+..+++|++|++++|++++. + .+..+++|+.|++++|++.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC---
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccC
Confidence 99999998889999999999999999998 55 455 689999999999999999864 3 6888999999999999886
Q ss_pred C
Q 004953 240 G 240 (722)
Q Consensus 240 ~ 240 (722)
+
T Consensus 195 ~ 195 (197)
T 4ezg_A 195 G 195 (197)
T ss_dssp -
T ss_pred C
Confidence 4
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=1.8e-17 Score=169.32 Aligned_cols=171 Identities=19% Similarity=0.224 Sum_probs=145.5
Q ss_pred ccceeEEEcCCCCCccccCccccCCCCCCEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEE
Q 004953 81 YLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQ 160 (722)
Q Consensus 81 ~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 160 (722)
+.+++.+++.++.+++.. .+..+++|++|++++|.++. +| .+..+++|++|+|++|++++..+ +..+++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 456778888888888654 57889999999999999984 45 68999999999999999996544 89999999999
Q ss_pred cccCCCCCCCchhhcCcCCCCEEECCCccccCCCCcCCCCCCccceeecccCCCCCCCCccCCCCCCCcEEECcCCCCCC
Q 004953 161 IDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEG 240 (722)
Q Consensus 161 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~ 240 (722)
+++|++++. |. +.. ++|++|++++|.+++. ..+..+++|++|++++|++++. +.+..+++|+.|++++|.+++
T Consensus 92 L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 92 VNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp CCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCB
T ss_pred CCCCccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcc
Confidence 999999864 33 233 8999999999999864 3688999999999999999965 368899999999999999986
Q ss_pred CCcchhccCCCCCcEEEccCCCCccCC
Q 004953 241 TTIPASYSNMSKLLKLSLRNCSLQGPM 267 (722)
Q Consensus 241 ~~~~~~~~~l~~L~~L~L~~N~l~~~~ 267 (722)
. ..+..+++|+.|++++|.+++..
T Consensus 165 ~---~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 165 T---GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp C---TTSTTCCCCCEEEEEEEEEECCC
T ss_pred h---HHhccCCCCCEEeCCCCcccCCc
Confidence 3 67889999999999999998653
No 117
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.69 E-value=4e-19 Score=203.72 Aligned_cols=298 Identities=16% Similarity=0.140 Sum_probs=179.0
Q ss_pred ccceeEEEcCCC-CCccc-cCccccCCCCCCEEECCCCCCccCCCcccc----CCCCCCEEeccCCc--CCCC-CCccCC
Q 004953 81 YLHLRELQLLNL-NLSGN-LSPEIGRLSYLTILDFMWNKISGSIPKEIG----NIKSLELLLLNGNE--LTGS-LPEELG 151 (722)
Q Consensus 81 ~~~l~~L~L~~~-~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~----~l~~L~~L~L~~n~--l~~~-~p~~~~ 151 (722)
+++|+.|++++| .++.. ++..+.++++|++|+|++|.+++..+..+. .+++|++|++++|. +... ++..+.
T Consensus 129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~ 208 (594)
T 2p1m_B 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVT 208 (594)
T ss_dssp CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHH
T ss_pred CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHH
Confidence 578999999988 55543 334445789999999999998765554443 66799999999987 2110 111124
Q ss_pred CCCCCcEEEcccCCCCCCCchhhcCcCCCCEEECCCcc--------------------------ccCC----CCcCCCCC
Q 004953 152 YLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNS--------------------------ISGQ----IPPELSRL 201 (722)
Q Consensus 152 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~--------------------------l~~~----~~~~l~~l 201 (722)
.+++|++|++++|...+.++..+.++++|++|+++.+. +... ++..+..+
T Consensus 209 ~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~ 288 (594)
T 2p1m_B 209 RCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVC 288 (594)
T ss_dssp HCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHH
T ss_pred hCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhh
Confidence 56899999999883222356667777778887765442 1111 12222356
Q ss_pred CccceeecccCCCCCCC-CccCCCCCCCcEEECcCCCCCCCCcchhccCCCCCcEEEccC---------CCCccCCC-CC
Q 004953 202 PSLVHMLLDNNNLTGYL-PPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRN---------CSLQGPMP-DL 270 (722)
Q Consensus 202 ~~L~~L~L~~N~l~~~~-~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~L~~---------N~l~~~~~-~l 270 (722)
++|++|++++|.+++.. ...+..+++|+.|++++| ++...++.....+++|++|++.+ +.+++... .+
T Consensus 289 ~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l 367 (594)
T 2p1m_B 289 SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV 367 (594)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHH
T ss_pred CCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHH
Confidence 78888888888876432 223557788888888877 43212233334577888887743 33332111 11
Q ss_pred -CCCCCccEEEccCCCCCccCCCccc--cCCcCEEEcc--C----CcCcccC-----CccCCCCCCCCEEeCCCCcCccc
Q 004953 271 -SRIPNLGYLDLSSNQLNGSIPPGRL--SLNITTIKLS--N----NKLTGTI-----PSNFSGLPRLQRLFIANNSLSGS 336 (722)
Q Consensus 271 -~~l~~L~~L~Ls~N~l~~~ip~~~~--~~~L~~L~L~--~----N~l~~~~-----~~~~~~l~~L~~L~L~~N~l~~~ 336 (722)
..+++|+.|+++.|.+++....... .++|+.|+++ + |.+++.. +..+..+++|+.|++++ .+++.
T Consensus 368 ~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~ 446 (594)
T 2p1m_B 368 SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDK 446 (594)
T ss_dssp HHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHH
T ss_pred HHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHH
Confidence 2356777777777777643332211 2567777777 3 4454221 11245566777777765 55555
Q ss_pred CChhhhhhccCCCCcccEEEccCCcCCCCC-CCC--CCCCceEEEccCCcC
Q 004953 337 IPSSIWQSRTLNATETFILDFQNNNLTNIS-GSF--NIPPNVTVRLRGNPF 384 (722)
Q Consensus 337 ip~~~~~~~~l~~~~L~~L~ls~N~l~~~~-~~~--~~~~l~~l~l~~N~l 384 (722)
.+..+... .++|+.|++++|.+++.. ..+ .+++|+.|++++|++
T Consensus 447 ~~~~l~~~----~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 447 VFEYIGTY----AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp HHHHHHHH----CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred HHHHHHHh----chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 44444431 356677777777765421 111 356677777777776
No 118
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.68 E-value=1.5e-16 Score=154.42 Aligned_cols=127 Identities=23% Similarity=0.290 Sum_probs=81.1
Q ss_pred EEEcCCCCCccccCccccCCCCCCEEECCCCCCccCCCc-cccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEEcccC
Q 004953 86 ELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPK-EIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQN 164 (722)
Q Consensus 86 ~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N 164 (722)
.+++++++++ .+|..+.. +|++|++++|.+++..+. .|.++++|++|+|++|++++..|..|.++++|++|+|++|
T Consensus 12 ~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 12 TVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp EEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred EEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 3444455553 44544432 777888888877765554 3677777777777777777766777777777777777777
Q ss_pred CCCCCCchhhcCcCCCCEEECCCccccCCCCcCCCCCCccceeecccCCCC
Q 004953 165 YISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLT 215 (722)
Q Consensus 165 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~ 215 (722)
++++..+..|.++++|++|+|++|++++..|..|..+++|++|++++|.++
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 776666666666666666666666666555555555555555555555554
No 119
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=99.67 E-value=7.8e-17 Score=167.04 Aligned_cols=90 Identities=26% Similarity=0.414 Sum_probs=78.2
Q ss_pred cCccCCCeeecCCCeeEEEEEeC------CCcEEEEEEccCCChhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEE
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILP------DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVL 697 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~------~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~L 697 (722)
++|...+.||+|+||+||+|++. ++..||||+++.......++|.+|+++|++++|||||+++|+|.+++..+|
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 92 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIM 92 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEE
Confidence 34666788999999999999863 477899999987766667789999999999999999999999999999999
Q ss_pred EecccccCcHHHHHHH
Q 004953 698 PLKLYIYLFIFQFSIK 713 (722)
Q Consensus 698 v~ey~~~G~L~~~l~~ 713 (722)
|||||++|+|.+++++
T Consensus 93 V~Ey~~~G~L~~~l~~ 108 (299)
T 4asz_A 93 VFEYMKHGDLNKFLRA 108 (299)
T ss_dssp EEECCTTCBHHHHHHH
T ss_pred EEEcCCCCcHHHHHHh
Confidence 9999999999999865
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.67 E-value=2.4e-19 Score=203.03 Aligned_cols=188 Identities=18% Similarity=0.177 Sum_probs=99.2
Q ss_pred CCCCCEEeccCCcCCCCCCccCCCCCCCcEEEcccCC-------------CCCCCchhhcCcCCCCEEE-CCCccccCCC
Q 004953 129 IKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNY-------------ISGSLPKSFANLNKTRHFH-MNNNSISGQI 194 (722)
Q Consensus 129 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~-------------l~~~~p~~~~~l~~L~~L~-L~~N~l~~~~ 194 (722)
+++|+.|+|++|+++ .+|+.++++++|+.|++++|. +.+..|..+..+++|+.|+ ++.|.+
T Consensus 348 ~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~---- 422 (567)
T 1dce_A 348 DEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL---- 422 (567)
T ss_dssp TTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH----
T ss_pred CccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc----
Confidence 344444444444443 334444444444444443332 3344555666666666665 444433
Q ss_pred CcCCCCCCccceeecccCCCCCCCCccCCCCCCCcEEECcCCCCCCCCcchhccCCCCCcEEEccCCCCccCCCCCCCCC
Q 004953 195 PPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIP 274 (722)
Q Consensus 195 ~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~l~~l~ 274 (722)
.+|..+.+.+|.++...+ ..|+.|++++|.+++ +|. +..+++|+.|+|++|+|+..+..+..++
T Consensus 423 -------~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~ 486 (567)
T 1dce_A 423 -------DDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLRALPPALAALR 486 (567)
T ss_dssp -------HHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCT
T ss_pred -------chhhhhhhhcccccccCc------cCceEEEecCCCCCC--CcC-ccccccCcEeecCcccccccchhhhcCC
Confidence 234444445555443211 135666666666653 444 6666666666666666663333455666
Q ss_pred CccEEEccCCCCCccCCCccccCCcCEEEccCCcCcccC-CccCCCCCCCCEEeCCCCcCcccCC
Q 004953 275 NLGYLDLSSNQLNGSIPPGRLSLNITTIKLSNNKLTGTI-PSNFSGLPRLQRLFIANNSLSGSIP 338 (722)
Q Consensus 275 ~L~~L~Ls~N~l~~~ip~~~~~~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~ip 338 (722)
+|+.|+|++|+|++ +|.....++|+.|+|++|+|++.. |..|..+++|+.|+|++|++++..|
T Consensus 487 ~L~~L~Ls~N~l~~-lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 487 CLEVLQASDNALEN-VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp TCCEEECCSSCCCC-CGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCCEEECCCCCCCC-CcccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 66666666666663 442222245666666666666554 6666666666666666666665433
No 121
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.66 E-value=7.7e-16 Score=147.22 Aligned_cols=135 Identities=20% Similarity=0.267 Sum_probs=82.9
Q ss_pred CCCCCCCceeecCCCCCCCCccceeEEEcCCCCCccccCccccCCCCCCEEECCCCCCccCCCccccCCCCCCEEeccCC
Q 004953 61 DPCTSNWTGVLCFNTTMDDGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGN 140 (722)
Q Consensus 61 ~~C~~~w~gv~C~~~~~~~~~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 140 (722)
+.|.|.|+++.|.+. +++ .+|..+ .++|++|++++|++++..+..|.++++|++|++++|
T Consensus 3 ~~C~C~~~~l~~~~~-----------------~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 62 (177)
T 2o6r_A 3 SRCSCSGTEIRCNSK-----------------GLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN 62 (177)
T ss_dssp TTCEEETTEEECCSS-----------------CCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred CCCEeCCCEEEecCC-----------------CCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC
Confidence 568788888888542 232 223222 256777777777777665566677777777777777
Q ss_pred cCCCCCCccCCCCCCCcEEEcccCCCCCCCchhhcCcCCCCEEECCCccccCCCCcCCCCCCccceeecccCCCC
Q 004953 141 ELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLT 215 (722)
Q Consensus 141 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~ 215 (722)
.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 63 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 63 QIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 777555555666667777777666666555555566666666666666665444434444555555555555444
No 122
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=99.66 E-value=1e-16 Score=168.60 Aligned_cols=89 Identities=25% Similarity=0.405 Sum_probs=78.9
Q ss_pred CccCCCeeecCCCeeEEEEEeC------CCcEEEEEEccCCChhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEE
Q 004953 625 NFNSSTQIGQGGYGKVYKGILP------DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLP 698 (722)
Q Consensus 625 ~f~~~~~iG~G~fG~Vy~g~l~------~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv 698 (722)
+|...+.||+|+||+||+|++. ++..||||+++.......++|.+|+++|++++|||||+++|+|.+++..+||
T Consensus 42 d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~lV 121 (329)
T 4aoj_A 42 DIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLMV 121 (329)
T ss_dssp GEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEEE
T ss_pred HeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence 4555678999999999999874 4788999999877666677899999999999999999999999999999999
Q ss_pred ecccccCcHHHHHHH
Q 004953 699 LKLYIYLFIFQFSIK 713 (722)
Q Consensus 699 ~ey~~~G~L~~~l~~ 713 (722)
||||++|+|.+|+++
T Consensus 122 ~Ey~~~G~L~~~l~~ 136 (329)
T 4aoj_A 122 FEYMRHGDLNRFLRS 136 (329)
T ss_dssp EECCTTCBHHHHHHT
T ss_pred EEcCCCCcHHHHHHh
Confidence 999999999988753
No 123
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.66 E-value=9.8e-19 Score=197.96 Aligned_cols=195 Identities=23% Similarity=0.274 Sum_probs=152.6
Q ss_pred cCCCCCCEEECCCCCCccCCCccccCCCCCCEEeccCCc-------------CCCCCCccCCCCCCCcEEE-cccCCCCC
Q 004953 103 GRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNE-------------LTGSLPEELGYLPKLDRIQ-IDQNYISG 168 (722)
Q Consensus 103 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-------------l~~~~p~~~~~l~~L~~L~-L~~N~l~~ 168 (722)
..+++|+.|+|++|.++ .+|..++++++|+.|++++|. +.+..|..++.+++|+.|+ ++.|.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 56788899999999887 778889999999999987775 5566777778888888888 56554431
Q ss_pred CCc-----hhhcC--cCCCCEEECCCccccCCCCcCCCCCCccceeecccCCCCCCCCccCCCCCCCcEEECcCCCCCCC
Q 004953 169 SLP-----KSFAN--LNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGT 241 (722)
Q Consensus 169 ~~p-----~~~~~--l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~ 241 (722)
... ..+.. ...|+.|+|++|.+++ +|. +..+++|++|++++|+++ .+|..++.+++|+.|++++|.+++
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~- 500 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN- 500 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-
Confidence 110 01111 1358899999999986 565 889999999999999998 778899999999999999999985
Q ss_pred CcchhccCCCCCcEEEccCCCCccCC-C-CCCCCCCccEEEccCCCCCccCCCccc----cCCcCEEEc
Q 004953 242 TIPASYSNMSKLLKLSLRNCSLQGPM-P-DLSRIPNLGYLDLSSNQLNGSIPPGRL----SLNITTIKL 304 (722)
Q Consensus 242 ~~~~~~~~l~~L~~L~L~~N~l~~~~-~-~l~~l~~L~~L~Ls~N~l~~~ip~~~~----~~~L~~L~L 304 (722)
+| .+..+++|+.|+|++|++++.. | .+..+++|+.|+|++|.+++..|.... .++|+.|++
T Consensus 501 -lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 501 -VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp -CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred -Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 56 7889999999999999999874 4 588899999999999999865543211 368888864
No 124
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=99.65 E-value=1.8e-16 Score=165.01 Aligned_cols=87 Identities=25% Similarity=0.377 Sum_probs=74.4
Q ss_pred ccCCCeeecCCCeeEEEEEeC------CCcEEEEEEccCCCh-hcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEE
Q 004953 626 FNSSTQIGQGGYGKVYKGILP------DGTVVAVKRAQEGSL-QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLP 698 (722)
Q Consensus 626 f~~~~~iG~G~fG~Vy~g~l~------~g~~vAVK~l~~~~~-~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv 698 (722)
+...+.||+|+||+||+|++. +++.||||+++.... ...++|.+|+.+|++++|||||+++|+|.+++..+||
T Consensus 28 ~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~lV 107 (308)
T 4gt4_A 28 VRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSMI 107 (308)
T ss_dssp EEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEE
T ss_pred CeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECCEEEEE
Confidence 334578999999999999973 467899999975432 3356899999999999999999999999999999999
Q ss_pred ecccccCcHHHHHH
Q 004953 699 LKLYIYLFIFQFSI 712 (722)
Q Consensus 699 ~ey~~~G~L~~~l~ 712 (722)
||||++|+|.+|++
T Consensus 108 ~Ey~~~G~L~~~L~ 121 (308)
T 4gt4_A 108 FSYCSHGDLHEFLV 121 (308)
T ss_dssp EECCSSCBHHHHHH
T ss_pred EEcCCCCcHHHHHH
Confidence 99999999999984
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.65 E-value=8.8e-16 Score=148.95 Aligned_cols=129 Identities=26% Similarity=0.394 Sum_probs=102.6
Q ss_pred CEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCc-cCCCCCCCcEEEcccCCCCCCCchhhcCcCCCCEEECCC
Q 004953 109 TILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPE-ELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNN 187 (722)
Q Consensus 109 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 187 (722)
+++++++|+++ .+|..+.. +|++|++++|++++..+. .|..+++|++|+|++|.+++..|..|.++++|++|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 68888888886 56765543 888888888888866654 477888888888888888887788888888888888888
Q ss_pred ccccCCCCcCCCCCCccceeecccCCCCCCCCccCCCCCCCcEEECcCCCCCC
Q 004953 188 NSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEG 240 (722)
Q Consensus 188 N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~ 240 (722)
|++++..+..|..+++|++|++++|++++..|..+..+++|+.|++++|.+++
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 88887777778888888888888888887777777777788888888777765
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=5.1e-16 Score=147.08 Aligned_cols=133 Identities=23% Similarity=0.247 Sum_probs=96.1
Q ss_pred CCCCCEEECCCCCCc-cCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEEcccCCCCCCCchhhcCcCCCCEE
Q 004953 105 LSYLTILDFMWNKIS-GSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHF 183 (722)
Q Consensus 105 l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 183 (722)
.++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++++.+|..+.++++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 367888888888887 66777778888888888888888755 667788888888888888887777777778888888
Q ss_pred ECCCccccCCCC-cCCCCCCccceeecccCCCCCCCC---ccCCCCCCCcEEECcCCCCC
Q 004953 184 HMNNNSISGQIP-PELSRLPSLVHMLLDNNNLTGYLP---PELSELPKLLILQLDNNNFE 239 (722)
Q Consensus 184 ~L~~N~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~~---~~l~~l~~L~~L~l~~N~l~ 239 (722)
++++|.+++... ..+..+++|++|++++|.+++..+ ..+..+++|+.|++++|.+.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 888887775422 556666677777777776664443 35566666666666666554
No 127
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.63 E-value=5.6e-17 Score=189.27 Aligned_cols=185 Identities=17% Similarity=0.188 Sum_probs=74.7
Q ss_pred CCCCEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEEcccCCCCCCCchhhcCcCCCCEEEC
Q 004953 106 SYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHM 185 (722)
Q Consensus 106 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 185 (722)
+.++.|+|.+|.+.. .+..+ |+.++|+.|.|.+ +++..|.+. ..+..|..+++|+.|+|
T Consensus 173 ~~~~~l~L~~n~~~~-~~~~~-----l~~l~Ls~~~i~~--------------~~~~~n~~~-~~~~~~~~l~~L~~L~L 231 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQAL-----LQHKKLSQYSIDE--------------DDDIENRMV-MPKDSKYDDQLWHALDL 231 (727)
T ss_dssp ----------------------------------------------------------------------CCCCCCEEEC
T ss_pred CccceEEeeCCCCCc-chhhH-----hhcCccCcccccC--------------cccccccee-cChhhhccCCCCcEEEC
Confidence 457888888888774 33332 4444455444432 122233333 33444555555555555
Q ss_pred CCccccCCCCcCCCCCCccceeecccCCCCCCCCccCCCCCCCcEEECcCCCCCCCCcchhccCCCCCcEEEccCCCCcc
Q 004953 186 NNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQG 265 (722)
Q Consensus 186 ~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 265 (722)
++|.+. .+|..+..+++|++|+|++|.|+ .+|..|+.+++|+.|+|++|.|+ .+|..+..+++|++|+|++|.|+.
T Consensus 232 s~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~L~~N~l~~ 307 (727)
T 4b8c_D 232 SNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT--SLPAELGSCFQLKYFYFFDNMVTT 307 (727)
T ss_dssp TTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS--SCCSSGGGGTTCSEEECCSSCCCC
T ss_pred CCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC--ccChhhcCCCCCCEEECCCCCCCc
Confidence 555554 34444445555555555555555 45555555556666666666655 345555666666666666666654
Q ss_pred CCCCCCCCCCccEEEccCCCCCccCCCccccC--CcCEEEccCCcCcccCCc
Q 004953 266 PMPDLSRIPNLGYLDLSSNQLNGSIPPGRLSL--NITTIKLSNNKLTGTIPS 315 (722)
Q Consensus 266 ~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~--~L~~L~L~~N~l~~~~~~ 315 (722)
.+..+..+++|++|+|++|.|++.+|...... .+..++|++|.+++.+|.
T Consensus 308 lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 308 LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp CCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred cChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 33345666666666666666665555432211 222355666666655554
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.63 E-value=1.9e-15 Score=146.61 Aligned_cols=126 Identities=24% Similarity=0.308 Sum_probs=86.8
Q ss_pred EEEcCCCCCccccCccccCCCCCCEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEEcccCC
Q 004953 86 ELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNY 165 (722)
Q Consensus 86 ~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~ 165 (722)
.+++++++++ .+|..+. ++|++|+|++|.++ .+|..|.++++|++|+|++|.|++..+..|.++++|++|+|++|+
T Consensus 14 ~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 3444555555 3444433 57888888888887 566778888888888888888887777777777777777777777
Q ss_pred CCCCCchhhcCcCCCCEEECCCccccCCCCcCCCCCCccceeecccCCCC
Q 004953 166 ISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLT 215 (722)
Q Consensus 166 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~ 215 (722)
+++..+..|.++++|++|+|++|.++...+..|..+++|++|++++|.+.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 77766667777777777777777776555555555666666666655554
No 129
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.62 E-value=7.3e-16 Score=146.00 Aligned_cols=134 Identities=17% Similarity=0.195 Sum_probs=121.4
Q ss_pred ccceeEEEcCCCCCc-cccCccccCCCCCCEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEE
Q 004953 81 YLHLRELQLLNLNLS-GNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRI 159 (722)
Q Consensus 81 ~~~l~~L~L~~~~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 159 (722)
+++++.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 357999999999998 78888899999999999999999976 789999999999999999998788888889999999
Q ss_pred EcccCCCCCCC-chhhcCcCCCCEEECCCccccCCCC---cCCCCCCccceeecccCCCCC
Q 004953 160 QIDQNYISGSL-PKSFANLNKTRHFHMNNNSISGQIP---PELSRLPSLVHMLLDNNNLTG 216 (722)
Q Consensus 160 ~L~~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~~---~~l~~l~~L~~L~L~~N~l~~ 216 (722)
++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+..
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 99999998753 3789999999999999999997655 478999999999999999874
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=8.9e-16 Score=142.30 Aligned_cols=109 Identities=23% Similarity=0.256 Sum_probs=58.1
Q ss_pred CCCCEEECCCCCCc-cCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEEcccCCCCCCCchhhcCcCCCCEEE
Q 004953 106 SYLTILDFMWNKIS-GSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFH 184 (722)
Q Consensus 106 ~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 184 (722)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 44555555555555 44555555555555555555555543 4455555666666666665554555555555555555
Q ss_pred CCCccccCC-CCcCCCCCCccceeecccCCCCC
Q 004953 185 MNNNSISGQ-IPPELSRLPSLVHMLLDNNNLTG 216 (722)
Q Consensus 185 L~~N~l~~~-~~~~l~~l~~L~~L~L~~N~l~~ 216 (722)
+++|.+++. .+..+..+++|++|++++|.+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~ 127 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN 127 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc
Confidence 555555532 12344444444444444444443
No 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=1e-15 Score=141.93 Aligned_cols=129 Identities=18% Similarity=0.210 Sum_probs=116.2
Q ss_pred ccceeEEEcCCCCCc-cccCccccCCCCCCEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEE
Q 004953 81 YLHLRELQLLNLNLS-GNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRI 159 (722)
Q Consensus 81 ~~~l~~L~L~~~~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 159 (722)
+++++.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+.++++|++|++++|.+++.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 468999999999998 78888899999999999999999976 779999999999999999998788888889999999
Q ss_pred EcccCCCCCC-CchhhcCcCCCCEEECCCccccCCCC---cCCCCCCccceeeccc
Q 004953 160 QIDQNYISGS-LPKSFANLNKTRHFHMNNNSISGQIP---PELSRLPSLVHMLLDN 211 (722)
Q Consensus 160 ~L~~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~~---~~l~~l~~L~~L~L~~ 211 (722)
++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|++++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999999874 34789999999999999999997765 5788889999998863
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.59 E-value=8.1e-15 Score=142.19 Aligned_cols=128 Identities=24% Similarity=0.340 Sum_probs=96.7
Q ss_pred CEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEEcccCCCCCCCchhhcCcCCCCEEECCCc
Q 004953 109 TILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNN 188 (722)
Q Consensus 109 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 188 (722)
+++++++|.++ .+|..+. ++|++|+|++|.++ .+|..|.++++|++|+|++|.|++..+..|.++++|++|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 57888888887 5665543 57888888888887 66677788888888888888888777777888888888888888
Q ss_pred cccCCCCcCCCCCCccceeecccCCCCCCCCccCCCCCCCcEEECcCCCCCC
Q 004953 189 SISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEG 240 (722)
Q Consensus 189 ~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~ 240 (722)
.+++..+..|..+++|++|++++|+++...+..|..+++|+.|++++|.+..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 8877777777777777777777777776555567777777777777776653
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.58 E-value=2.2e-14 Score=137.02 Aligned_cols=130 Identities=22% Similarity=0.244 Sum_probs=104.5
Q ss_pred CCEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEEcccCCCCCCCchhhcCcCCCCEEECCC
Q 004953 108 LTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNN 187 (722)
Q Consensus 108 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 187 (722)
.+.+++++|+++ .+|..+ .++|++|++++|++++..+..|..+++|++|++++|++++..+..|.++++|++|++++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 467888888887 455444 36889999999998877777778888899999988888877777788888888888888
Q ss_pred ccccCCCCcCCCCCCccceeecccCCCCCCCCccCCCCCCCcEEECcCCCCCC
Q 004953 188 NSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEG 240 (722)
Q Consensus 188 N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~ 240 (722)
|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+++
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 88887777777888888888888888886666667778888888888888775
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.58 E-value=3.2e-16 Score=165.74 Aligned_cols=277 Identities=15% Similarity=0.164 Sum_probs=145.6
Q ss_pred cceeEEEcCCCCCccccCccccC-CCCCCEEECCCCCCc--cCCCccccCCCCCCEEeccCCcCCCCCCccCCC------
Q 004953 82 LHLRELQLLNLNLSGNLSPEIGR-LSYLTILDFMWNKIS--GSIPKEIGNIKSLELLLLNGNELTGSLPEELGY------ 152 (722)
Q Consensus 82 ~~l~~L~L~~~~l~~~~~~~~~~-l~~L~~L~Ls~n~l~--~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~------ 152 (722)
.+++.|.++++ +...-...+.. +++|++|||++|++. ...+..+ +.++.+.+..|.| .+..|.+
T Consensus 25 ~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~I---~~~aF~~~~~~~~ 97 (329)
T 3sb4_A 25 NSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANFV---PAYAFSNVVNGVT 97 (329)
T ss_dssp HHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTEE---CTTTTEEEETTEE
T ss_pred CceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccccc---ccccccccccccc---CHHHhcccccccc
Confidence 45666666542 11111112223 566777777777665 2111111 2234444444432 2334555
Q ss_pred --CCCCcEEEcccCCCCCCCchhhcCcCCCCEEECCCccccCCCCcCCCCCCccceeecccCC----CCCCCCccCCCCC
Q 004953 153 --LPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNN----LTGYLPPELSELP 226 (722)
Q Consensus 153 --l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~----l~~~~~~~l~~l~ 226 (722)
+++|+.|+|.+ .++.+.+.+|.++++|+.|++++|.+....+..|.++.++.++....+. ........|.++.
T Consensus 98 ~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~ 176 (329)
T 3sb4_A 98 KGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE 176 (329)
T ss_dssp EECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred cccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence 66666666666 5655555566666666666666666655555566665555555544421 1222223344444
Q ss_pred CCc-EEECcCCCCCCCCcchhc----cCCCCCcEEEccCCCCccCCCCC-CCCCCccEEEccCCCCCccCCCcccc--CC
Q 004953 227 KLL-ILQLDNNNFEGTTIPASY----SNMSKLLKLSLRNCSLQGPMPDL-SRIPNLGYLDLSSNQLNGSIPPGRLS--LN 298 (722)
Q Consensus 227 ~L~-~L~l~~N~l~~~~~~~~~----~~l~~L~~L~L~~N~l~~~~~~l-~~l~~L~~L~Ls~N~l~~~ip~~~~~--~~ 298 (722)
.|+ .+.+.... .++..+ ....+++.+.+.++-.......+ ..+++|+.|++++|+++ .||...|. .+
T Consensus 177 ~L~~~i~~~~~~----~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~-~I~~~aF~~~~~ 251 (329)
T 3sb4_A 177 PLETTIQVGAMG----KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNAT-TIPDFTFAQKKY 251 (329)
T ss_dssp CCEEEEEECTTC----CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCC-EECTTTTTTCTT
T ss_pred ccceeEEecCCC----cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcc-eecHhhhhCCCC
Confidence 444 33332211 122111 12334444444433111111111 12567777777777777 66666554 47
Q ss_pred cCEEEccCCcCcccCCccCCCCCCCC-EEeCCCCcCcccCChhhhhhccCCCCcccEEEccCCcCCCCCCC-C-CCCCce
Q 004953 299 ITTIKLSNNKLTGTIPSNFSGLPRLQ-RLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGS-F-NIPPNV 375 (722)
Q Consensus 299 L~~L~L~~N~l~~~~~~~~~~l~~L~-~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~ls~N~l~~~~~~-~-~~~~l~ 375 (722)
|+.|+|.+| ++...+.+|.++++|+ .+++.+ +++..-+..|.. +++|+.++++.|+++.+++. + ..++|+
T Consensus 252 L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~-----c~~L~~l~l~~n~i~~I~~~aF~~~~~L~ 324 (329)
T 3sb4_A 252 LLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMG-----CDNLRYVLATGDKITTLGDELFGNGVPSK 324 (329)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTT-----CTTEEEEEECSSCCCEECTTTTCTTCCCC
T ss_pred CCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhC-----CccCCEEEeCCCccCccchhhhcCCcchh
Confidence 777777777 6667777788888887 888877 666333344443 46777888877888777653 3 566676
Q ss_pred EEE
Q 004953 376 TVR 378 (722)
Q Consensus 376 ~l~ 378 (722)
.++
T Consensus 325 ~ly 327 (329)
T 3sb4_A 325 LIY 327 (329)
T ss_dssp EEE
T ss_pred hhc
Confidence 665
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.56 E-value=1.5e-15 Score=160.48 Aligned_cols=260 Identities=12% Similarity=0.109 Sum_probs=160.6
Q ss_pred ccceeEEEcCCCCCc--cccCccccCCCCCCEEECCCCCCccCCCccccC--------CCCCCEEeccCCcCCCCCCccC
Q 004953 81 YLHLRELQLLNLNLS--GNLSPEIGRLSYLTILDFMWNKISGSIPKEIGN--------IKSLELLLLNGNELTGSLPEEL 150 (722)
Q Consensus 81 ~~~l~~L~L~~~~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~--------l~~L~~L~L~~n~l~~~~p~~~ 150 (722)
+++|+.|||++|.+. ......+ +.++.+.+..|.|. +.+|.+ +++|+.|+|.+ .++.+.+.+|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~I~---~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF 120 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANFVP---AYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAF 120 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTEEC---TTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTT
T ss_pred hccCeEEecCcceeEEecCccccc---cccccccccccccC---HHHhcccccccccccCCCcEEECCc-cccchhHHHh
Confidence 467999999999987 3222222 23555666666433 455667 99999999998 8887777889
Q ss_pred CCCCCCcEEEcccCCCCCCCchhhcCcCCCCEEECCCccc----cCCCCcCCCCCCccc-eeecccCCC-CCCCCccCCC
Q 004953 151 GYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSI----SGQIPPELSRLPSLV-HMLLDNNNL-TGYLPPELSE 224 (722)
Q Consensus 151 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l----~~~~~~~l~~l~~L~-~L~L~~N~l-~~~~~~~l~~ 224 (722)
.++++|+.|++.+|.+..+.+..|.++.++..+.+..+.. .......|.++..|+ .+.+....- .......-..
T Consensus 121 ~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~ 200 (329)
T 3sb4_A 121 KGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQ 200 (329)
T ss_dssp TTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCC
T ss_pred hcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccC
Confidence 9999999999999999888888898888888877766432 222334455556665 344432211 0000001112
Q ss_pred CCCCcEEECcCCCCCCCCcchhccCCCCCcEEEccCCCCccCCC-CCCCCCCccEEEccCCCCCccCCCcccc--CCcC-
Q 004953 225 LPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMP-DLSRIPNLGYLDLSSNQLNGSIPPGRLS--LNIT- 300 (722)
Q Consensus 225 l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~ip~~~~~--~~L~- 300 (722)
..++..+.+.++-... ........+++|+.|+|.+|+++...+ .|.++++|+.|++.+| ++ .|+...|. .+|+
T Consensus 201 ~~~~~~l~~~~~l~~~-~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~ 277 (329)
T 3sb4_A 201 PRDINFLTIEGKLDNA-DFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LK-TIGQRVFSNCGRLAG 277 (329)
T ss_dssp GGGCSEEEEEECCCHH-HHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCE
T ss_pred ccccceEEEeeeecHH-HHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cc-eehHHHhhCChhccE
Confidence 3455555555432110 011111236677777777777765444 3667777777777776 55 56665554 4677
Q ss_pred EEEccCCcCcccCCccCCCCCCCCEEeCCCCcCcccCChhhhhhccCCCCcccEEE
Q 004953 301 TIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILD 356 (722)
Q Consensus 301 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~ 356 (722)
.+++.+ .++...+.+|.++++|+.+++++|+++..-+..|.. +++|+.+.
T Consensus 278 ~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~-----~~~L~~ly 327 (329)
T 3sb4_A 278 TLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGN-----GVPSKLIY 327 (329)
T ss_dssp EEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCT-----TCCCCEEE
T ss_pred EEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcC-----Ccchhhhc
Confidence 777776 666666677777777777777777777444444443 34555553
No 136
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=99.54 E-value=9.3e-15 Score=153.85 Aligned_cols=90 Identities=19% Similarity=0.248 Sum_probs=73.3
Q ss_pred cCccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCCC--hhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEec
Q 004953 624 NNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGS--LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPLK 700 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~~--~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~e 700 (722)
++|...+.||+|+||+||+|+. .+|+.||||+++... ....+.|.+|+++|++++|||||++++++.+++..|||||
T Consensus 24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmE 103 (350)
T 4b9d_A 24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMD 103 (350)
T ss_dssp CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred cceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEe
Confidence 5688888999999999999985 469999999996542 3334679999999999999999999999999999999999
Q ss_pred ccccCcHHHHHHH
Q 004953 701 LYIYLFIFQFSIK 713 (722)
Q Consensus 701 y~~~G~L~~~l~~ 713 (722)
||++|+|.+++.+
T Consensus 104 y~~gg~L~~~i~~ 116 (350)
T 4b9d_A 104 YCEGGDLFKRINA 116 (350)
T ss_dssp CCTTCBHHHHHHH
T ss_pred CCCCCcHHHHHHH
Confidence 9999999988754
No 137
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=99.54 E-value=6.6e-15 Score=154.73 Aligned_cols=90 Identities=18% Similarity=0.237 Sum_probs=78.1
Q ss_pred cCccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCCChhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEeccc
Q 004953 624 NNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPLKLY 702 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~ey~ 702 (722)
+.|+..+.||+|+||+||+|.. .+|+.||||+++.......+.+.+|+++|++++|||||++++++.+++..+||||||
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~ 153 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 153 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeCC
Confidence 3466678899999999999996 469999999996544444556899999999999999999999999999999999999
Q ss_pred ccCcHHHHHHH
Q 004953 703 IYLFIFQFSIK 713 (722)
Q Consensus 703 ~~G~L~~~l~~ 713 (722)
++|+|.+++.+
T Consensus 154 ~gg~L~~~l~~ 164 (346)
T 4fih_A 154 EGGALTDIVTH 164 (346)
T ss_dssp TTEEHHHHHHH
T ss_pred CCCcHHHHHHc
Confidence 99999887654
No 138
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=99.53 E-value=1.2e-14 Score=150.59 Aligned_cols=88 Identities=24% Similarity=0.343 Sum_probs=73.7
Q ss_pred hhcCccCCCeeecCCCeeEEEEEeCCCcEEEEEEccCC--ChhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEe
Q 004953 622 ATNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEG--SLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPL 699 (722)
Q Consensus 622 ~t~~f~~~~~iG~G~fG~Vy~g~l~~g~~vAVK~l~~~--~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~ 699 (722)
..+++...+.||+|+||+||+|++.+ .||||+++.. .....++|.+|+++|++++|||||+++|+|.+ +..+|||
T Consensus 34 ~~~~l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVm 110 (307)
T 3omv_A 34 EASEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVT 110 (307)
T ss_dssp CTTSCCEEEECCCCSSSEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEE
T ss_pred cHHHeEEeeEEeeCCCcEEEEEEECC--cEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEC-CeEEEEE
Confidence 34566677889999999999999753 6999998643 23345679999999999999999999999864 5689999
Q ss_pred cccccCcHHHHHH
Q 004953 700 KLYIYLFIFQFSI 712 (722)
Q Consensus 700 ey~~~G~L~~~l~ 712 (722)
|||++|+|.+++.
T Consensus 111 Ey~~gGsL~~~l~ 123 (307)
T 3omv_A 111 QWCEGSSLYKHLH 123 (307)
T ss_dssp ECCSSCBHHHHHH
T ss_pred EcCCCCCHHHHHh
Confidence 9999999988764
No 139
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=99.52 E-value=9.8e-15 Score=154.70 Aligned_cols=99 Identities=19% Similarity=0.384 Sum_probs=82.5
Q ss_pred cHHHHHHhhcCccCCCeeecCCCeeEEEEEeCC------CcEEEEEEccCCCh-hcHHHHHHHHHHHHhcCC-CcccceE
Q 004953 615 TYGEMALATNNFNSSTQIGQGGYGKVYKGILPD------GTVVAVKRAQEGSL-QGEKEFLTEIQFLSRLHH-RNLVSLV 686 (722)
Q Consensus 615 ~~~~~~~~t~~f~~~~~iG~G~fG~Vy~g~l~~------g~~vAVK~l~~~~~-~~~~~f~~E~~~l~~l~H-~Niv~l~ 686 (722)
...+|+...++|...+.||+|+||+||+|.+.. ++.||||+++.... ...++|.+|+++|.+++| ||||+++
T Consensus 55 ~~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~ 134 (353)
T 4ase_A 55 DASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLL 134 (353)
T ss_dssp CHHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred CCcccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEEE
Confidence 345566677889889999999999999998632 36899999976543 345679999999999965 8999999
Q ss_pred EEEEeC-CeEEEEecccccCcHHHHHHH
Q 004953 687 GYCDEE-GEQVLPLKLYIYLFIFQFSIK 713 (722)
Q Consensus 687 g~~~~~-~~~~Lv~ey~~~G~L~~~l~~ 713 (722)
|+|.++ +..+||||||++|+|.+|+++
T Consensus 135 g~~~~~~~~~~iV~Ey~~~G~L~~~L~~ 162 (353)
T 4ase_A 135 GACTKPGGPLMVIVEFCKFGNLSTYLRS 162 (353)
T ss_dssp EEECCTTSCCEEEEECCTTEEHHHHHHH
T ss_pred EEEEecCCEEEEEEEcCCCCCHHHHHHh
Confidence 999775 568999999999999999875
No 140
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=99.52 E-value=1.7e-14 Score=155.53 Aligned_cols=90 Identities=18% Similarity=0.237 Sum_probs=79.5
Q ss_pred cCccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCCChhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEeccc
Q 004953 624 NNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPLKLY 702 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~ey~ 702 (722)
+.|+..+.||+|+||+||+|.. .+|+.||||+++.......+.+.+|+++|++++|||||++++++.+++..|||||||
T Consensus 151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy~ 230 (423)
T 4fie_A 151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 230 (423)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred HhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEEeCC
Confidence 4577788999999999999996 469999999997654445567999999999999999999999999999999999999
Q ss_pred ccCcHHHHHHH
Q 004953 703 IYLFIFQFSIK 713 (722)
Q Consensus 703 ~~G~L~~~l~~ 713 (722)
++|+|.+++++
T Consensus 231 ~gG~L~~~i~~ 241 (423)
T 4fie_A 231 EGGALTDIVTH 241 (423)
T ss_dssp TTEEHHHHHHH
T ss_pred CCCcHHHHHhc
Confidence 99999887653
No 141
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=99.50 E-value=1.8e-14 Score=149.14 Aligned_cols=90 Identities=17% Similarity=0.165 Sum_probs=78.6
Q ss_pred cCccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCCC---hhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEe
Q 004953 624 NNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGS---LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPL 699 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~~---~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~ 699 (722)
++|+..+.||+|+||+||+|+. .+|+.||||+++... ....+.+.+|+++|++++|||||++++++.+++..++||
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivm 111 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL 111 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 4588889999999999999985 568999999996421 223467999999999999999999999999999999999
Q ss_pred cccccCcHHHHHHH
Q 004953 700 KLYIYLFIFQFSIK 713 (722)
Q Consensus 700 ey~~~G~L~~~l~~ 713 (722)
||+++|+|++++++
T Consensus 112 Ey~~gG~L~~~i~~ 125 (311)
T 4aw0_A 112 SYAKNGELLKYIRK 125 (311)
T ss_dssp CCCTTEEHHHHHHH
T ss_pred ecCCCCCHHHHHHH
Confidence 99999999988765
No 142
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=99.50 E-value=2.4e-14 Score=149.08 Aligned_cols=84 Identities=23% Similarity=0.332 Sum_probs=68.7
Q ss_pred ccCCCeeecCCCeeEEEEEeCCCcEEEEEEccCCChhcHHHH--HHHHHHHHhcCCCcccceEEEEEeCC----eEEEEe
Q 004953 626 FNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEF--LTEIQFLSRLHHRNLVSLVGYCDEEG----EQVLPL 699 (722)
Q Consensus 626 f~~~~~iG~G~fG~Vy~g~l~~g~~vAVK~l~~~~~~~~~~f--~~E~~~l~~l~H~Niv~l~g~~~~~~----~~~Lv~ 699 (722)
+...+.||+|+||+||+|++ +|+.||||+++.. ..+++ .+|+..+.+++|||||+++|+|.+++ ..+|||
T Consensus 5 i~L~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~---~~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~ 80 (303)
T 3hmm_A 5 IVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVS 80 (303)
T ss_dssp EEEEEEEEECSSSEEEEEEE-TTEEEEEEEECGG---GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEE
T ss_pred EEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECcc---chhhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEEe
Confidence 44567899999999999998 6899999999643 23334 45566667899999999999998754 579999
Q ss_pred cccccCcHHHHHHH
Q 004953 700 KLYIYLFIFQFSIK 713 (722)
Q Consensus 700 ey~~~G~L~~~l~~ 713 (722)
|||++|+|.+++++
T Consensus 81 Ey~~~gsL~~~l~~ 94 (303)
T 3hmm_A 81 DYHEHGSLFDYLNR 94 (303)
T ss_dssp ECCTTCBHHHHHHH
T ss_pred cCCCCCcHHHHHHh
Confidence 99999999988764
No 143
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.49 E-value=8.2e-13 Score=142.92 Aligned_cols=264 Identities=9% Similarity=0.121 Sum_probs=198.9
Q ss_pred cceeEEEcCCCCCccccCccccCCCCCCEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEEc
Q 004953 82 LHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQI 161 (722)
Q Consensus 82 ~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 161 (722)
..++.+.+.+ +++......|.+. +|+.+++..+ ++.+...+|.++ +|+.+.+.. .++.+.+..|.++++|+.+++
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 3456666654 4555556677775 7999999776 766667778874 799999986 677677788999999999999
Q ss_pred ccCCCCCCCchhhcCcCCCCEEECCCccccCCCCcCCCCCCccceeecccCCCCCCCCccCCCCCCCcEEECcCCCCCCC
Q 004953 162 DQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGT 241 (722)
Q Consensus 162 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~ 241 (722)
..|+++......|. ..+|+.+.+..+ ++......|.++++|+.+++..| ++.....+|.+ .+|+.+.+. +.++.
T Consensus 188 ~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~- 261 (401)
T 4fdw_A 188 SKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTN- 261 (401)
T ss_dssp TTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCE-
T ss_pred CCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccE-
Confidence 99999877667776 589999999855 66667778999999999999875 66566777877 789999994 44543
Q ss_pred CcchhccCCCCCcEEEccCCCCc-----cCC-CCCCCCCCccEEEccCCCCCccCCCcccc--CCcCEEEccCCcCcccC
Q 004953 242 TIPASYSNMSKLLKLSLRNCSLQ-----GPM-PDLSRIPNLGYLDLSSNQLNGSIPPGRLS--LNITTIKLSNNKLTGTI 313 (722)
Q Consensus 242 ~~~~~~~~l~~L~~L~L~~N~l~-----~~~-~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~--~~L~~L~L~~N~l~~~~ 313 (722)
.-...|.++++|+.+++.+|.+. ... ..|.++++|+.+++. +.++ .|+...|. .+|+.++|..| ++...
T Consensus 262 I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~-~I~~~aF~~c~~L~~l~lp~~-l~~I~ 338 (401)
T 4fdw_A 262 IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIR-ILGQGLLGGNRKVTQLTIPAN-VTQIN 338 (401)
T ss_dssp ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCC-EECTTTTTTCCSCCEEEECTT-CCEEC
T ss_pred EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceE-EEhhhhhcCCCCccEEEECcc-ccEEc
Confidence 23567889999999999988876 122 248889999999998 4566 67766665 58999999655 77777
Q ss_pred CccCCCCCCCCEEeCCCCcCcccCChhhhhhccCCCCcccEEEccCCcCCC
Q 004953 314 PSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTN 364 (722)
Q Consensus 314 ~~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~ls~N~l~~ 364 (722)
..+|.++ +|+.+++.+|.+....+..+..+. ..+..|.+..|.+..
T Consensus 339 ~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~----~~l~~l~vp~~~~~~ 384 (401)
T 4fdw_A 339 FSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFP----DDITVIRVPAESVEK 384 (401)
T ss_dssp TTSSSSS-CCCEEEECCSSCCBCCCSSCCCSC----TTCCEEEECGGGHHH
T ss_pred HHhCCCC-CCCEEEEcCCCCcccccccccCCC----CCccEEEeCHHHHHH
Confidence 8899999 999999999988744333443321 357788888776654
No 144
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=99.49 E-value=5.6e-14 Score=144.57 Aligned_cols=87 Identities=23% Similarity=0.302 Sum_probs=72.4
Q ss_pred cCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCC--ChhcHHHHHHHHHHHHhcCCCcccceEEEEEe----CCeEEEEe
Q 004953 627 NSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEG--SLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDE----EGEQVLPL 699 (722)
Q Consensus 627 ~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~--~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~----~~~~~Lv~ 699 (722)
...+.||+|+||+||+|... ++..||||++... .....+.|.+|+++|++++|||||++++++.+ ++..+|||
T Consensus 29 ~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lvm 108 (290)
T 3fpq_A 29 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVT 108 (290)
T ss_dssp EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEEE
T ss_pred EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEEE
Confidence 33467999999999999864 5889999998643 23344679999999999999999999999865 34579999
Q ss_pred cccccCcHHHHHHH
Q 004953 700 KLYIYLFIFQFSIK 713 (722)
Q Consensus 700 ey~~~G~L~~~l~~ 713 (722)
|||++|+|.+++++
T Consensus 109 Ey~~gg~L~~~l~~ 122 (290)
T 3fpq_A 109 ELMTSGTLKTYLKR 122 (290)
T ss_dssp ECCCSCBHHHHHHH
T ss_pred eCCCCCCHHHHHHh
Confidence 99999999888755
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.48 E-value=1.1e-12 Score=141.83 Aligned_cols=263 Identities=11% Similarity=0.096 Sum_probs=205.1
Q ss_pred cCCCCCCEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEEcccCCCCCCCchhhcCcCCCCE
Q 004953 103 GRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRH 182 (722)
Q Consensus 103 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 182 (722)
..+..++.+.+.+ .++.+...+|.++ +|+.+.+..+ ++.+...+|.++ +|+.+.+.. .++.+.+..|.++++|+.
T Consensus 110 ~~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 110 EILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp EECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred EecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCe
Confidence 4457899999975 5665667788885 8999999877 776777788885 799999986 677777889999999999
Q ss_pred EECCCccccCCCCcCCCCCCccceeecccCCCCCCCCccCCCCCCCcEEECcCCCCCCCCcchhccCCCCCcEEEccCCC
Q 004953 183 FHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCS 262 (722)
Q Consensus 183 L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 262 (722)
+++.+|.++......|. ..+|+.+.+..+ ++.....+|.++++|+.+++..| ++. .-...|.+ .+|+.+.+. +.
T Consensus 185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~-I~~~aF~~-~~L~~i~lp-~~ 258 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VST-IGQEAFRE-SGITTVKLP-NG 258 (401)
T ss_dssp EECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCE-ECTTTTTT-CCCSEEEEE-TT
T ss_pred eecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccC-cccccccc-CCccEEEeC-CC
Confidence 99999999876666776 589999999854 77778889999999999999875 442 23456666 789999994 55
Q ss_pred CccCCC-CCCCCCCccEEEccCCCCC----ccCCCcccc--CCcCEEEccCCcCcccCCccCCCCCCCCEEeCCCCcCcc
Q 004953 263 LQGPMP-DLSRIPNLGYLDLSSNQLN----GSIPPGRLS--LNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSG 335 (722)
Q Consensus 263 l~~~~~-~l~~l~~L~~L~Ls~N~l~----~~ip~~~~~--~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 335 (722)
++.... .|.++++|+.+++.+|.+. ..++...|. .+|+.++|. +.++.....+|.++++|+.++|.+| ++.
T Consensus 259 i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~ 336 (401)
T 4fdw_A 259 VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQ 336 (401)
T ss_dssp CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCE
T ss_pred ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccE
Confidence 655433 5889999999999998764 136655555 599999999 5588888899999999999999665 653
Q ss_pred cCChhhhhhccCCCCcccEEEccCCcCCCCCCC-C-CC-CCceEEEccCCcC
Q 004953 336 SIPSSIWQSRTLNATETFILDFQNNNLTNISGS-F-NI-PPNVTVRLRGNPF 384 (722)
Q Consensus 336 ~ip~~~~~~~~l~~~~L~~L~ls~N~l~~~~~~-~-~~-~~l~~l~l~~N~l 384 (722)
.-+..|. ++ +|+.+++++|.+..+... + .. ..+..|++..|.+
T Consensus 337 I~~~aF~-----~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 337 INFSAFN-----NT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp ECTTSSS-----SS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred EcHHhCC-----CC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 3333343 34 799999999999887654 3 44 4678888877653
No 146
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.48 E-value=4.4e-14 Score=134.84 Aligned_cols=132 Identities=18% Similarity=0.219 Sum_probs=79.7
Q ss_pred cccCCCCCCEEECCCCCCccCCCccccCCC-CCCEEeccCCcCCCCCCccCCCCCCCcEEEcccCCCCCCCchhhcCcCC
Q 004953 101 EIGRLSYLTILDFMWNKISGSIPKEIGNIK-SLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNK 179 (722)
Q Consensus 101 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 179 (722)
.+.++.+|++|++++|+++. +|. +..+. +|++|++++|.+++. ..+..+++|++|++++|.+++..+..|..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 45566777777777777773 343 44444 777777777777754 45677777777777777777555555567777
Q ss_pred CCEEECCCccccCCCCc--CCCCCCccceeecccCCCCCCCCc----cCCCCCCCcEEECcCCCC
Q 004953 180 TRHFHMNNNSISGQIPP--ELSRLPSLVHMLLDNNNLTGYLPP----ELSELPKLLILQLDNNNF 238 (722)
Q Consensus 180 L~~L~L~~N~l~~~~~~--~l~~l~~L~~L~L~~N~l~~~~~~----~l~~l~~L~~L~l~~N~l 238 (722)
|++|++++|.++. +|. .+..+++|++|++++|.++. .|. .+..+++|+.|+++.|.+
T Consensus 90 L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 90 LTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCH
Confidence 7777777777643 333 45555555555555555542 222 244444555555544443
No 147
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.48 E-value=1.8e-13 Score=129.75 Aligned_cols=105 Identities=20% Similarity=0.242 Sum_probs=79.3
Q ss_pred eEEEcCCCCCccccCccccCCCCCCEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEEcccC
Q 004953 85 RELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQN 164 (722)
Q Consensus 85 ~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N 164 (722)
+.|+++++.++. +|..+. ++|++|+|++|.|++..|..|.++++|++|+|++|+|++..+..|..+++|++|+|++|
T Consensus 12 ~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 345555666653 454443 77888888888888777888888888888888888888776667788888888888888
Q ss_pred CCCCCCchhhcCcCCCCEEECCCccccC
Q 004953 165 YISGSLPKSFANLNKTRHFHMNNNSISG 192 (722)
Q Consensus 165 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 192 (722)
+|++..+..|.++++|++|+|++|.+..
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 8887666677778888888888887763
No 148
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.44 E-value=8.6e-14 Score=132.79 Aligned_cols=109 Identities=27% Similarity=0.296 Sum_probs=52.3
Q ss_pred ccCCCCCCEEeccCCcCCCCCCccCCCC-CCCcEEEcccCCCCCCCchhhcCcCCCCEEECCCccccCCCCcCCCCCCcc
Q 004953 126 IGNIKSLELLLLNGNELTGSLPEELGYL-PKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSL 204 (722)
Q Consensus 126 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L 204 (722)
+.++.+|++|++++|.++. +|. +..+ ++|++|++++|.+++. ..|..+++|++|++++|.+++..+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 4556666666666666663 333 3222 2555566555555543 344455555555555555543333333444444
Q ss_pred ceeecccCCCCCCCCc--cCCCCCCCcEEECcCCCCC
Q 004953 205 VHMLLDNNNLTGYLPP--ELSELPKLLILQLDNNNFE 239 (722)
Q Consensus 205 ~~L~L~~N~l~~~~~~--~l~~l~~L~~L~l~~N~l~ 239 (722)
++|++++|+++. +|. .+..+++|+.|++++|.++
T Consensus 91 ~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 91 TELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp CEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG
T ss_pred CEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC
Confidence 444444444432 222 3344444444444444443
No 149
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.44 E-value=3.7e-16 Score=152.43 Aligned_cols=130 Identities=20% Similarity=0.289 Sum_probs=63.9
Q ss_pred CCCCCEEECCCCCCccCCCc------cccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEEcccCCCCCCCchhhcCcC
Q 004953 105 LSYLTILDFMWNKISGSIPK------EIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLN 178 (722)
Q Consensus 105 l~~L~~L~Ls~n~l~~~~p~------~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 178 (722)
...++.++++.+.+++..|. .|..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..++
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~ 93 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVAD 93 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCC
Confidence 34444444444444444443 45555555555555555553 33 4455555555555555554 3444444455
Q ss_pred CCCEEECCCccccCCCCcCCCCCCccceeecccCCCCCCCC-ccCCCCCCCcEEECcCCCCC
Q 004953 179 KTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLP-PELSELPKLLILQLDNNNFE 239 (722)
Q Consensus 179 ~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-~~l~~l~~L~~L~l~~N~l~ 239 (722)
+|++|++++|.+++ +| .+..+++|++|++++|++++..+ ..+..+++|+.|++++|.++
T Consensus 94 ~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 94 TLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp HCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred cCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 55555555555543 22 34444555555555555543211 23444555555555555544
No 150
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.44 E-value=2.8e-16 Score=153.27 Aligned_cols=150 Identities=23% Similarity=0.300 Sum_probs=122.2
Q ss_pred ceeEEEcCCCCCccccCc------cccCCCCCCEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCC
Q 004953 83 HLRELQLLNLNLSGNLSP------EIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKL 156 (722)
Q Consensus 83 ~l~~L~L~~~~l~~~~~~------~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 156 (722)
.++.++++.+.+.+.+|. .+..+++|++|++++|.+++ +| .+.++++|++|++++|.++ .+|..+..+++|
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L 95 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL 95 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence 345555566666666555 89999999999999999996 66 8999999999999999999 678777888999
Q ss_pred cEEEcccCCCCCCCchhhcCcCCCCEEECCCccccCCCC-cCCCCCCccceeecccCCCCCCCCcc----------CCCC
Q 004953 157 DRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIP-PELSRLPSLVHMLLDNNNLTGYLPPE----------LSEL 225 (722)
Q Consensus 157 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~~~~----------l~~l 225 (722)
++|++++|++++ +| .+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++..|.. +..+
T Consensus 96 ~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l 173 (198)
T 1ds9_A 96 EELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRL 173 (198)
T ss_dssp SEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHC
T ss_pred CEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhC
Confidence 999999999986 44 68899999999999999985433 46889999999999999998765542 5666
Q ss_pred CCCcEEECcCCCCC
Q 004953 226 PKLLILQLDNNNFE 239 (722)
Q Consensus 226 ~~L~~L~l~~N~l~ 239 (722)
++|+.|+ +|.++
T Consensus 174 ~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 174 PNLKKLD--GMPVD 185 (198)
T ss_dssp SSCSEEC--CGGGT
T ss_pred CCcEEEC--CcccC
Confidence 7777665 55444
No 151
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=99.44 E-value=1.8e-13 Score=139.51 Aligned_cols=89 Identities=20% Similarity=0.352 Sum_probs=72.8
Q ss_pred cCccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCCC---hhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEe
Q 004953 624 NNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGS---LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPL 699 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~~---~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~ 699 (722)
++|+..+.||+|+||+||+|.. .+|+.||||+++... ....+.|.+|+++|++++|||||++++++.+++..++||
T Consensus 13 g~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivm 92 (275)
T 3hyh_A 13 GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVI 92 (275)
T ss_dssp -CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred eCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEE
Confidence 5788889999999999999985 469999999996532 223457999999999999999999999999999999999
Q ss_pred cccccCcHHHHHHH
Q 004953 700 KLYIYLFIFQFSIK 713 (722)
Q Consensus 700 ey~~~G~L~~~l~~ 713 (722)
||+ +|+|.+++++
T Consensus 93 Ey~-~g~L~~~l~~ 105 (275)
T 3hyh_A 93 EYA-GNELFDYIVQ 105 (275)
T ss_dssp ECC-CEEHHHHHHH
T ss_pred eCC-CCCHHHHHHH
Confidence 999 6899887654
No 152
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*
Probab=99.44 E-value=1.1e-13 Score=143.57 Aligned_cols=88 Identities=19% Similarity=0.305 Sum_probs=72.5
Q ss_pred CccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCCCh-hcHHHHHHHHHHHHhcCCCcccceEEEEEeCC---------
Q 004953 625 NFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSL-QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEG--------- 693 (722)
Q Consensus 625 ~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~~~-~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~--------- 693 (722)
+|+..+.||+|+||+||+|+. .+|+.||||+++.... ...+.|.+|+++|++++|||||++++++.+.+
T Consensus 6 dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~~~ 85 (299)
T 4g31_A 6 DFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQPSS 85 (299)
T ss_dssp HEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC---------
T ss_pred hCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCccccccccC
Confidence 477788999999999999986 4689999999965433 33467999999999999999999999987544
Q ss_pred ---eEEEEecccccCcHHHHHH
Q 004953 694 ---EQVLPLKLYIYLFIFQFSI 712 (722)
Q Consensus 694 ---~~~Lv~ey~~~G~L~~~l~ 712 (722)
..++|||||++|+|.+++.
T Consensus 86 ~~~~l~ivmE~~~gg~L~~~l~ 107 (299)
T 4g31_A 86 PKVYLYIQMQLCRKENLKDWMN 107 (299)
T ss_dssp -CEEEEEEEECCCSCCHHHHHH
T ss_pred CCcEEEEEEecCCCCcHHHHHH
Confidence 3689999999999988765
No 153
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=99.43 E-value=1e-13 Score=145.13 Aligned_cols=85 Identities=19% Similarity=0.169 Sum_probs=73.9
Q ss_pred cCccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCCChhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEeccc
Q 004953 624 NNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPLKLY 702 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~ey~ 702 (722)
+.|...+.||+|+||+||+|+. .+|+.||||+++.... +.+|+.+|++++|||||++++++.+++..+||||||
T Consensus 58 ~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-----~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~ 132 (336)
T 4g3f_A 58 HWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-----RVEELVACAGLSSPRIVPLYGAVREGPWVNIFMELL 132 (336)
T ss_dssp TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-----CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred hheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh-----HHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEecc
Confidence 4466667899999999999996 4689999999965322 247999999999999999999999999999999999
Q ss_pred ccCcHHHHHHH
Q 004953 703 IYLFIFQFSIK 713 (722)
Q Consensus 703 ~~G~L~~~l~~ 713 (722)
++|+|.+++++
T Consensus 133 ~gg~L~~~l~~ 143 (336)
T 4g3f_A 133 EGGSLGQLIKQ 143 (336)
T ss_dssp TTCBHHHHHHH
T ss_pred CCCcHHHHHHH
Confidence 99999888765
No 154
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.41 E-value=1.1e-12 Score=124.26 Aligned_cols=105 Identities=25% Similarity=0.351 Sum_probs=63.4
Q ss_pred CCEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEEcccCCCCCCCchhhcCcCCCCEEECCC
Q 004953 108 LTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNN 187 (722)
Q Consensus 108 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 187 (722)
.+++++++|.++ .+|..+ .++|++|+|++|+|++..|..|.++++|++|+|++|+|++..+..|.++++|++|+|++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 456777777776 355444 26666677777766666666666666666666666666655555556666666666666
Q ss_pred ccccCCCCcCCCCCCccceeecccCCCC
Q 004953 188 NSISGQIPPELSRLPSLVHMLLDNNNLT 215 (722)
Q Consensus 188 N~l~~~~~~~l~~l~~L~~L~L~~N~l~ 215 (722)
|++++..+..|..+++|++|++++|.++
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 6665544444555555555555555444
No 155
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=99.40 E-value=5.6e-14 Score=145.32 Aligned_cols=90 Identities=23% Similarity=0.242 Sum_probs=71.7
Q ss_pred cCccCCCeeecCCCeeEEEEEe----CCCcEEEEEEccCCCh--hcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEE
Q 004953 624 NNFNSSTQIGQGGYGKVYKGIL----PDGTVVAVKRAQEGSL--QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVL 697 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l----~~g~~vAVK~l~~~~~--~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~L 697 (722)
++|+..+.||+|+||+||+|+. ..++.||||+++.... .....|.+|+++|++++|||||++++++.+++..++
T Consensus 24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~i 103 (304)
T 3ubd_A 24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLYL 103 (304)
T ss_dssp GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETTEEEE
T ss_pred cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEE
Confidence 4588889999999999999974 2478999999964321 223468899999999999999999999999999999
Q ss_pred EecccccCcHHHHHHH
Q 004953 698 PLKLYIYLFIFQFSIK 713 (722)
Q Consensus 698 v~ey~~~G~L~~~l~~ 713 (722)
|||||++|+|.+++++
T Consensus 104 vmEy~~gg~L~~~l~~ 119 (304)
T 3ubd_A 104 ILDFLRGGDLFTRLSK 119 (304)
T ss_dssp EECCCTTCEEHHHHHH
T ss_pred EEEcCCCCCHHHHHHh
Confidence 9999999999888765
No 156
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.39 E-value=2e-12 Score=122.90 Aligned_cols=104 Identities=21% Similarity=0.269 Sum_probs=71.8
Q ss_pred eEEEcCCCCCccccCccccCCCCCCEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEEcccC
Q 004953 85 RELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQN 164 (722)
Q Consensus 85 ~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N 164 (722)
+.++++++.++ .+|..+. ++|++|+|++|+|++..|..|.++++|++|+|++|+|++..+..|.++++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 56777777775 4555443 67777777777777766777777777777777777777655555667777777777777
Q ss_pred CCCCCCchhhcCcCCCCEEECCCcccc
Q 004953 165 YISGSLPKSFANLNKTRHFHMNNNSIS 191 (722)
Q Consensus 165 ~l~~~~p~~~~~l~~L~~L~L~~N~l~ 191 (722)
+|++..+..|..+++|++|+|++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 776555555666666777666666665
No 157
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.38 E-value=2.5e-12 Score=122.31 Aligned_cols=105 Identities=23% Similarity=0.337 Sum_probs=90.7
Q ss_pred CEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEEcccCCCCCCCchhhcCcCCCCEEECCCc
Q 004953 109 TILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNN 188 (722)
Q Consensus 109 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 188 (722)
+.+++++|.++ .+|..+. ++|++|+|++|+|++..|..|.++++|++|+|++|+|++..+..|.++++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 68899999886 6676664 88999999999999888888999999999999999999877777889999999999999
Q ss_pred cccCCCCcCCCCCCccceeecccCCCCC
Q 004953 189 SISGQIPPELSRLPSLVHMLLDNNNLTG 216 (722)
Q Consensus 189 ~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 216 (722)
++++..+..|..+++|++|++++|.+..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 9987766678889999999999998874
No 158
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=99.34 E-value=1.7e-12 Score=146.82 Aligned_cols=89 Identities=21% Similarity=0.284 Sum_probs=80.0
Q ss_pred cCccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCCChhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEeccc
Q 004953 624 NNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPLKLY 702 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~ey~ 702 (722)
++|...+.||+|+||+||+|.. .+|+.||||++......+.+.+.+|+++|++++|||||++++++.+++..++|||||
T Consensus 157 ~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~E~~ 236 (573)
T 3uto_A 157 DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFM 236 (573)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEEECC
T ss_pred cccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeec
Confidence 5688889999999999999986 469999999997665555667999999999999999999999999999999999999
Q ss_pred ccCcHHHHHH
Q 004953 703 IYLFIFQFSI 712 (722)
Q Consensus 703 ~~G~L~~~l~ 712 (722)
++|+|++++.
T Consensus 237 ~gg~L~~~i~ 246 (573)
T 3uto_A 237 SGGELFEKVA 246 (573)
T ss_dssp CCCBHHHHHT
T ss_pred CCCcHHHHHH
Confidence 9999988763
No 159
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=99.33 E-value=2.9e-12 Score=134.71 Aligned_cols=101 Identities=19% Similarity=0.142 Sum_probs=86.7
Q ss_pred ccccHHHHHHhhcC----------ccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCChhcHHHHHHHHHHHHhcCCC
Q 004953 612 RSFTYGEMALATNN----------FNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHR 680 (722)
Q Consensus 612 ~~~~~~~~~~~t~~----------f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~H~ 680 (722)
..++++++..+++. |+..+.||+|+||+||+|... +|+.||||+++.......+.|.+|+.++.+++||
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~ 102 (321)
T 2c30_A 23 GVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHF 102 (321)
T ss_dssp --CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCCT
T ss_pred CcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCCC
Confidence 46788888887764 555678999999999999975 6999999999766555567899999999999999
Q ss_pred cccceEEEEEeCCeEEEEecccccCcHHHHHH
Q 004953 681 NLVSLVGYCDEEGEQVLPLKLYIYLFIFQFSI 712 (722)
Q Consensus 681 Niv~l~g~~~~~~~~~Lv~ey~~~G~L~~~l~ 712 (722)
|||++++++...+..++||||+++|+|.+++.
T Consensus 103 niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~ 134 (321)
T 2c30_A 103 NVVEMYKSYLVGEELWVLMEFLQGGALTDIVS 134 (321)
T ss_dssp TBCCEEEEEEETTEEEEEECCCCSCBHHHHHT
T ss_pred CcceEEEEEEECCEEEEEEecCCCCCHHHHHH
Confidence 99999999999999999999999999987654
No 160
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*
Probab=99.31 E-value=1.7e-12 Score=136.58 Aligned_cols=105 Identities=37% Similarity=0.622 Sum_probs=91.4
Q ss_pred CCcccccHHHHHHhhcCccCCCeeecCCCeeEEEEEeCCCcEEEEEEccCCCh-hcHHHHHHHHHHHHhcCCCcccceEE
Q 004953 609 DGVRSFTYGEMALATNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSL-QGEKEFLTEIQFLSRLHHRNLVSLVG 687 (722)
Q Consensus 609 ~~~~~~~~~~~~~~t~~f~~~~~iG~G~fG~Vy~g~l~~g~~vAVK~l~~~~~-~~~~~f~~E~~~l~~l~H~Niv~l~g 687 (722)
.....+++.++..++++|...+.||+|+||+||+|...+|+.||||++..... .....|.+|++++.+++|||||++++
T Consensus 15 ~~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~ 94 (326)
T 3uim_A 15 GQLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRG 94 (326)
T ss_dssp CCCEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCE
T ss_pred CccceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEE
Confidence 34567899999999999999999999999999999988899999999975432 22346999999999999999999999
Q ss_pred EEEeCCeEEEEecccccCcHHHHHHH
Q 004953 688 YCDEEGEQVLPLKLYIYLFIFQFSIK 713 (722)
Q Consensus 688 ~~~~~~~~~Lv~ey~~~G~L~~~l~~ 713 (722)
+|..++..++||||+++|+|.+++++
T Consensus 95 ~~~~~~~~~lv~e~~~~~~L~~~l~~ 120 (326)
T 3uim_A 95 FCMTPTERLLVYPYMANGSVASCLRE 120 (326)
T ss_dssp EECCSSCCEEEEECCTTCBHHHHHHC
T ss_pred EEecCCceEEEEEeccCCCHHHHHHh
Confidence 99999999999999999999887753
No 161
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=99.31 E-value=2.8e-12 Score=138.23 Aligned_cols=87 Identities=22% Similarity=0.322 Sum_probs=72.0
Q ss_pred cCccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCCC--hhcHHHHHHHHHHHHhcCCCcccceEEEEEe------CCe
Q 004953 624 NNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGS--LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDE------EGE 694 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~~--~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~------~~~ 694 (722)
++|...+.||+|+||+||+|.. .+|+.||||+++... ....+.+.+|+++|++++|||||++++++.. .+.
T Consensus 54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~ 133 (398)
T 4b99_A 54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKS 133 (398)
T ss_dssp SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCC
T ss_pred CCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCCE
Confidence 4577788999999999999985 469999999996532 2334578999999999999999999999864 357
Q ss_pred EEEEecccccCcHHHHH
Q 004953 695 QVLPLKLYIYLFIFQFS 711 (722)
Q Consensus 695 ~~Lv~ey~~~G~L~~~l 711 (722)
.+||||||+ |+|.+++
T Consensus 134 ~~ivmE~~~-g~L~~~i 149 (398)
T 4b99_A 134 VYVVLDLME-SDLHQII 149 (398)
T ss_dssp EEEEEECCS-EEHHHHH
T ss_pred EEEEEeCCC-CCHHHHH
Confidence 899999996 6786654
No 162
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*
Probab=99.30 E-value=7.6e-13 Score=139.10 Aligned_cols=99 Identities=43% Similarity=0.600 Sum_probs=86.5
Q ss_pred cccHHHHHHhhcCccCCCeeecCCCeeEEEEEeCCCcEEEEEEccCCChhcHHHHHHHHHHHHhcCCCcccceEEEEEeC
Q 004953 613 SFTYGEMALATNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEE 692 (722)
Q Consensus 613 ~~~~~~~~~~t~~f~~~~~iG~G~fG~Vy~g~l~~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~ 692 (722)
.+++.++..++++|+..+.||+|+||.||+|..++|..||||++........+.|.+|++++.+++|||||+++++|...
T Consensus 28 ~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~ 107 (321)
T 2qkw_B 28 RVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDER 107 (321)
T ss_dssp --CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECCCT
T ss_pred eecHHHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCC
Confidence 34555666788899999999999999999999888999999998776555567899999999999999999999999999
Q ss_pred CeEEEEecccccCcHHHHH
Q 004953 693 GEQVLPLKLYIYLFIFQFS 711 (722)
Q Consensus 693 ~~~~Lv~ey~~~G~L~~~l 711 (722)
+..++||||+++|+|.+++
T Consensus 108 ~~~~lv~e~~~~~~L~~~l 126 (321)
T 2qkw_B 108 NEMILIYKYMENGNLKRHL 126 (321)
T ss_dssp TCCEEEEECCTTCBTGGGS
T ss_pred CeEEEEEEcCCCCcHHHHH
Confidence 9999999999999986554
No 163
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Probab=99.30 E-value=9.5e-12 Score=129.67 Aligned_cols=101 Identities=30% Similarity=0.500 Sum_probs=89.6
Q ss_pred cccccHHHHHHhhcCccCC------CeeecCCCeeEEEEEeCCCcEEEEEEccCCC----hhcHHHHHHHHHHHHhcCCC
Q 004953 611 VRSFTYGEMALATNNFNSS------TQIGQGGYGKVYKGILPDGTVVAVKRAQEGS----LQGEKEFLTEIQFLSRLHHR 680 (722)
Q Consensus 611 ~~~~~~~~~~~~t~~f~~~------~~iG~G~fG~Vy~g~l~~g~~vAVK~l~~~~----~~~~~~f~~E~~~l~~l~H~ 680 (722)
...|+++++..++++|+.. +.||+|+||.||+|.. ++..||||++.... ....+.|.+|++++.+++||
T Consensus 12 ~~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~ 90 (307)
T 2nru_A 12 FHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHE 90 (307)
T ss_dssp CEECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCT
T ss_pred CCcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCC
Confidence 4678999999999999888 8999999999999987 68899999986432 22346799999999999999
Q ss_pred cccceEEEEEeCCeEEEEecccccCcHHHHHH
Q 004953 681 NLVSLVGYCDEEGEQVLPLKLYIYLFIFQFSI 712 (722)
Q Consensus 681 Niv~l~g~~~~~~~~~Lv~ey~~~G~L~~~l~ 712 (722)
||+++++++...+..++||||+++|+|.+++.
T Consensus 91 ~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~ 122 (307)
T 2nru_A 91 NLVELLGFSSDGDDLCLVYVYMPNGSLLDRLS 122 (307)
T ss_dssp TBCCEEEEECSSSSCEEEEECCTTCBHHHHHH
T ss_pred CeEEEEEEEecCCceEEEEEecCCCcHHHHHH
Confidence 99999999999999999999999999988875
No 164
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.28 E-value=9.8e-12 Score=132.11 Aligned_cols=112 Identities=18% Similarity=0.278 Sum_probs=81.6
Q ss_pred CCC-CCCCceeecCCCCCCCCccceeEEEcCCCCCccccCccccCCCCCCEEECCC-CCCccCCCccccCCCCCCEEecc
Q 004953 61 DPC-TSNWTGVLCFNTTMDDGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMW-NKISGSIPKEIGNIKSLELLLLN 138 (722)
Q Consensus 61 ~~C-~~~w~gv~C~~~~~~~~~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~L~ 138 (722)
..| .|.|..+.|.+. |+++. +|. |..+++|++|+|++ |.|++..+..|.++++|++|+|+
T Consensus 3 ~~c~~C~~~~v~~~~~----------------n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~ 64 (347)
T 2ifg_A 3 DACCPHGSSGLRCTRD----------------GALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIV 64 (347)
T ss_dssp SSSCCSSSSCEECCSS----------------CCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECC
T ss_pred CcCccccCCEEEcCCC----------------CCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECC
Confidence 346 667777777431 14553 566 88888888888885 88887777778888888888888
Q ss_pred CCcCCCCCCccCCCCCCCcEEEcccCCCCCCCchhhcCcCCCCEEECCCcccc
Q 004953 139 GNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSIS 191 (722)
Q Consensus 139 ~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 191 (722)
+|+|++..|..|.++++|+.|+|++|+|++..+..|..++ |+.|+|.+|.+.
T Consensus 65 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 65 KSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 8888877777778888888888888887766555665555 777777777665
No 165
>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*
Probab=99.27 E-value=6.1e-12 Score=133.97 Aligned_cols=89 Identities=17% Similarity=0.209 Sum_probs=76.1
Q ss_pred HhhcCccCCCeeecCCCeeEEEEEeC----CCcEEEEEEccCCChhcHHHHHHHHHHHHhc-CCCcccceEEEEEeCCeE
Q 004953 621 LATNNFNSSTQIGQGGYGKVYKGILP----DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRL-HHRNLVSLVGYCDEEGEQ 695 (722)
Q Consensus 621 ~~t~~f~~~~~iG~G~fG~Vy~g~l~----~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l-~H~Niv~l~g~~~~~~~~ 695 (722)
...+.|+..+.||+|+||+||+|+.+ .++.||||++.... ....+.+|+++|.++ +|||||++++++.+.+..
T Consensus 18 ~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~--~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~~~ 95 (361)
T 4f9c_A 18 QLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTS--HPIRIAAELQCLTVAGGQDNVMGVKYCFRKNDHV 95 (361)
T ss_dssp GGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTS--CHHHHHHHHHHHHHTCSBTTBCCCSEEEEETTEE
T ss_pred CccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEcccc--CHHHHHHHHHHHHHhcCCCCCceEEEEEEECCEE
Confidence 34567888999999999999999742 46789999986532 345688999999998 699999999999999999
Q ss_pred EEEecccccCcHHHHH
Q 004953 696 VLPLKLYIYLFIFQFS 711 (722)
Q Consensus 696 ~Lv~ey~~~G~L~~~l 711 (722)
++|||||++|+|.+++
T Consensus 96 ~lvmE~~~g~~L~~~~ 111 (361)
T 4f9c_A 96 VIAMPYLEHESFLDIL 111 (361)
T ss_dssp EEEEECCCCCCHHHHH
T ss_pred EEEEeCCCcccHHHHH
Confidence 9999999999997764
No 166
>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}
Probab=99.27 E-value=1.1e-11 Score=129.40 Aligned_cols=90 Identities=16% Similarity=0.228 Sum_probs=80.8
Q ss_pred cCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCChhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEeccc
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPLKLY 702 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~ey~ 702 (722)
++|...+.||+|+||+||+|... ++..||+|++........+.|.+|++++.+++|||||++++++.+++..++||||+
T Consensus 10 ~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~ 89 (310)
T 3s95_A 10 SDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEYI 89 (310)
T ss_dssp GGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred hHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEEEEec
Confidence 45677789999999999999964 58999999987666666678999999999999999999999999999999999999
Q ss_pred ccCcHHHHHHH
Q 004953 703 IYLFIFQFSIK 713 (722)
Q Consensus 703 ~~G~L~~~l~~ 713 (722)
++|+|.+++++
T Consensus 90 ~~~~L~~~l~~ 100 (310)
T 3s95_A 90 KGGTLRGIIKS 100 (310)
T ss_dssp TTCBHHHHHHH
T ss_pred CCCcHHHHHHh
Confidence 99999888765
No 167
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Probab=99.25 E-value=1.8e-11 Score=127.04 Aligned_cols=90 Identities=17% Similarity=0.224 Sum_probs=79.7
Q ss_pred cCccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCCChhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEeccc
Q 004953 624 NNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPLKLY 702 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~ey~ 702 (722)
++|...+.||+|+||+||+|.. .+|+.||||++........+.+.+|+.++.+++|||||++++++..++..++||||+
T Consensus 20 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~ 99 (297)
T 3fxz_A 20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYL 99 (297)
T ss_dssp GTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred hceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEEEECC
Confidence 5688889999999999999984 568999999986544445567999999999999999999999999999999999999
Q ss_pred ccCcHHHHHHH
Q 004953 703 IYLFIFQFSIK 713 (722)
Q Consensus 703 ~~G~L~~~l~~ 713 (722)
++|+|.+++.+
T Consensus 100 ~~~~L~~~~~~ 110 (297)
T 3fxz_A 100 AGGSLTDVVTE 110 (297)
T ss_dssp TTCBHHHHHHH
T ss_pred CCCCHHHHHhh
Confidence 99999888654
No 168
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=99.24 E-value=5.1e-12 Score=138.26 Aligned_cols=100 Identities=19% Similarity=0.214 Sum_probs=84.2
Q ss_pred ccHHHHHHhhcCccCCCeeecCCCeeEEEEEeCC-CcEEEEEEccCCCh---hcHHHHHHHHHHHHhcCCCcccceEEEE
Q 004953 614 FTYGEMALATNNFNSSTQIGQGGYGKVYKGILPD-GTVVAVKRAQEGSL---QGEKEFLTEIQFLSRLHHRNLVSLVGYC 689 (722)
Q Consensus 614 ~~~~~~~~~t~~f~~~~~iG~G~fG~Vy~g~l~~-g~~vAVK~l~~~~~---~~~~~f~~E~~~l~~l~H~Niv~l~g~~ 689 (722)
+.+.++...+++|...+.||+|+||+||+|.... ++.||||+++.... .....|.+|+.++.+++|||||+++++|
T Consensus 64 ~~~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~ 143 (437)
T 4aw2_A 64 SKVKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAF 143 (437)
T ss_dssp HHHHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEE
T ss_pred chhhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEE
Confidence 3455666677899999999999999999999754 78999999864211 1122489999999999999999999999
Q ss_pred EeCCeEEEEecccccCcHHHHHHH
Q 004953 690 DEEGEQVLPLKLYIYLFIFQFSIK 713 (722)
Q Consensus 690 ~~~~~~~Lv~ey~~~G~L~~~l~~ 713 (722)
.+++..++|||||++|+|.+++++
T Consensus 144 ~~~~~~~lV~Ey~~gg~L~~~l~~ 167 (437)
T 4aw2_A 144 QDDNNLYLVMDYYVGGDLLTLLSK 167 (437)
T ss_dssp ECSSEEEEEECCCTTCBHHHHHHT
T ss_pred eeCCEEEEEEecCCCCcHHHHHHH
Confidence 999999999999999999888765
No 169
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=99.23 E-value=9.1e-12 Score=133.78 Aligned_cols=90 Identities=22% Similarity=0.355 Sum_probs=77.7
Q ss_pred cCccCCCeeecCCCeeEEEEEeC----CCcEEEEEEccCCC-hhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEE
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILP----DGTVVAVKRAQEGS-LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLP 698 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~----~g~~vAVK~l~~~~-~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv 698 (722)
.+|...+.||+|+||+||+|... ++..||||+++... ....++|.+|++++.+++|||||+++|+|...+..++|
T Consensus 45 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 124 (373)
T 2qol_A 45 TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIV 124 (373)
T ss_dssp GGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEEE
T ss_pred hhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCceEEE
Confidence 46788899999999999999864 47789999997643 33456799999999999999999999999999999999
Q ss_pred ecccccCcHHHHHHH
Q 004953 699 LKLYIYLFIFQFSIK 713 (722)
Q Consensus 699 ~ey~~~G~L~~~l~~ 713 (722)
|||+++|+|.+++++
T Consensus 125 ~e~~~~~sL~~~l~~ 139 (373)
T 2qol_A 125 TEYMENGSLDSFLRK 139 (373)
T ss_dssp EECCTTCBHHHHHHT
T ss_pred EeCCCCCcHHHHHHh
Confidence 999999999888754
No 170
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=99.22 E-value=3e-11 Score=127.31 Aligned_cols=91 Identities=21% Similarity=0.303 Sum_probs=79.2
Q ss_pred hcCccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCC--ChhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEe
Q 004953 623 TNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEG--SLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPL 699 (722)
Q Consensus 623 t~~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~--~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~ 699 (722)
.++|...+.||+|+||.||+|.. .+|+.||||++... .....+.+.+|+++|.+++|||||++++++..++..++||
T Consensus 14 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~ 93 (328)
T 3fe3_A 14 IGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLIM 93 (328)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEE
Confidence 35688889999999999999986 57999999998643 2334467899999999999999999999999999999999
Q ss_pred cccccCcHHHHHHH
Q 004953 700 KLYIYLFIFQFSIK 713 (722)
Q Consensus 700 ey~~~G~L~~~l~~ 713 (722)
||+++|+|.+++.+
T Consensus 94 e~~~~~~L~~~l~~ 107 (328)
T 3fe3_A 94 EYASGGEVFDYLVA 107 (328)
T ss_dssp CCCTTCBHHHHHHH
T ss_pred ECCCCCcHHHHHHH
Confidence 99999999888754
No 171
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=99.21 E-value=2e-11 Score=128.53 Aligned_cols=90 Identities=21% Similarity=0.308 Sum_probs=76.7
Q ss_pred cCccCCCeeecCCCeeEEEEEeC----CCcEEEEEEccCCC-hhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEE
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILP----DGTVVAVKRAQEGS-LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLP 698 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~----~g~~vAVK~l~~~~-~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv 698 (722)
++|...+.||+|+||+||+|... .+..||||+++... ....++|.+|++++.+++|||||++++++.+.+..++|
T Consensus 49 ~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv 128 (325)
T 3kul_A 49 SRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMIV 128 (325)
T ss_dssp GGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCCEEE
T ss_pred hHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCccEEE
Confidence 34666689999999999999974 34569999997643 33456799999999999999999999999998999999
Q ss_pred ecccccCcHHHHHHH
Q 004953 699 LKLYIYLFIFQFSIK 713 (722)
Q Consensus 699 ~ey~~~G~L~~~l~~ 713 (722)
|||+++|+|.+++++
T Consensus 129 ~e~~~~~~L~~~l~~ 143 (325)
T 3kul_A 129 TEYMENGSLDTFLRT 143 (325)
T ss_dssp EECCTTCBHHHHHHT
T ss_pred eeCCCCCcHHHHHHh
Confidence 999999999888753
No 172
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=99.20 E-value=2.4e-11 Score=137.19 Aligned_cols=90 Identities=21% Similarity=0.202 Sum_probs=73.2
Q ss_pred cCccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCCC---hhcHHHH---HHHHHHHHhcCCCcccceEEEEEeCCeEE
Q 004953 624 NNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGS---LQGEKEF---LTEIQFLSRLHHRNLVSLVGYCDEEGEQV 696 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~~---~~~~~~f---~~E~~~l~~l~H~Niv~l~g~~~~~~~~~ 696 (722)
++|...++||+|+||+||+|.. .+|+.||||+++... ......+ ..++.++..++|||||++++++.+++..|
T Consensus 189 ddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~ly 268 (689)
T 3v5w_A 189 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLS 268 (689)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEEE
T ss_pred HHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEEE
Confidence 4688889999999999999996 469999999985321 1112223 34467777889999999999999999999
Q ss_pred EEecccccCcHHHHHHH
Q 004953 697 LPLKLYIYLFIFQFSIK 713 (722)
Q Consensus 697 Lv~ey~~~G~L~~~l~~ 713 (722)
+|||||++|+|++++++
T Consensus 269 lVmEy~~GGdL~~~l~~ 285 (689)
T 3v5w_A 269 FILDLMNGGDLHYHLSQ 285 (689)
T ss_dssp EEECCCCSCBHHHHHHH
T ss_pred EEEecCCCCcHHHHHHh
Confidence 99999999999888765
No 173
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=99.20 E-value=1.5e-11 Score=132.27 Aligned_cols=93 Identities=30% Similarity=0.478 Sum_probs=80.4
Q ss_pred HhhcCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCCh-hcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEE
Q 004953 621 LATNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL-QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLP 698 (722)
Q Consensus 621 ~~t~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~~-~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv 698 (722)
...++|...+.||+|+||.||+|... +++.||||.++.... ...++|.+|+++|.+++|||||+++|+|..++..++|
T Consensus 111 ~~~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 190 (377)
T 3cbl_A 111 LNHEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIV 190 (377)
T ss_dssp CCGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCEEE
T ss_pred EchHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcEEE
Confidence 34456777889999999999999985 689999999975432 2334699999999999999999999999998999999
Q ss_pred ecccccCcHHHHHHH
Q 004953 699 LKLYIYLFIFQFSIK 713 (722)
Q Consensus 699 ~ey~~~G~L~~~l~~ 713 (722)
||||++|+|.+++++
T Consensus 191 ~e~~~~g~L~~~l~~ 205 (377)
T 3cbl_A 191 MELVQGGDFLTFLRT 205 (377)
T ss_dssp EECCTTCBHHHHHHH
T ss_pred EEcCCCCCHHHHHHh
Confidence 999999999998765
No 174
>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=99.20 E-value=2.8e-11 Score=123.50 Aligned_cols=89 Identities=26% Similarity=0.428 Sum_probs=78.9
Q ss_pred cCccCCCeeecCCCeeEEEEEeCCCcEEEEEEccCCChhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEecccc
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPLKLYI 703 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~ey~~ 703 (722)
++|...+.||+|+||.||+|...++..||||++.... ...++|.+|++++.+++||||+++++++.+++..++||||++
T Consensus 10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~ 88 (269)
T 4hcu_A 10 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGA-MSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFME 88 (269)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTS-BCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECCT
T ss_pred hhceeeheecCCCccEEEEEEecCCCeEEEEEecccc-cCHHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEEEeCC
Confidence 4577778999999999999998888999999997543 234679999999999999999999999999999999999999
Q ss_pred cCcHHHHHHH
Q 004953 704 YLFIFQFSIK 713 (722)
Q Consensus 704 ~G~L~~~l~~ 713 (722)
+|+|.+++.+
T Consensus 89 ~~~L~~~l~~ 98 (269)
T 4hcu_A 89 HGCLSDYLRT 98 (269)
T ss_dssp TCBHHHHHHT
T ss_pred CCcHHHHHHh
Confidence 9999888754
No 175
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A
Probab=99.20 E-value=3.2e-11 Score=124.50 Aligned_cols=89 Identities=9% Similarity=-0.001 Sum_probs=77.8
Q ss_pred cCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCCh---hcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEe
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL---QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPL 699 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~~---~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~ 699 (722)
++|...+.||+|+||.||+|... +|+.||||.+..... ...+.|.+|+.++.+++|||||++++++..++..++||
T Consensus 31 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 110 (286)
T 3uqc_A 31 GRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVVA 110 (286)
T ss_dssp TTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred CcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEEE
Confidence 45777889999999999999975 489999999975432 22367999999999999999999999999999999999
Q ss_pred cccccCcHHHHHH
Q 004953 700 KLYIYLFIFQFSI 712 (722)
Q Consensus 700 ey~~~G~L~~~l~ 712 (722)
||+++|+|.++++
T Consensus 111 e~~~g~~L~~~l~ 123 (286)
T 3uqc_A 111 EWIRGGSLQEVAD 123 (286)
T ss_dssp ECCCEEEHHHHHT
T ss_pred EecCCCCHHHHHh
Confidence 9999999988764
No 176
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=99.20 E-value=1.1e-11 Score=136.77 Aligned_cols=95 Identities=21% Similarity=0.334 Sum_probs=82.2
Q ss_pred HHHHHhhcCccCCCeeecCCCeeEEEEEeCCCcEEEEEEccCCChhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEE
Q 004953 617 GEMALATNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQV 696 (722)
Q Consensus 617 ~~~~~~t~~f~~~~~iG~G~fG~Vy~g~l~~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~ 696 (722)
++++...++|...+.||+|+||+||+|...++..||||+++... ...++|.+|+++|.+++|||||+++|++. .+..+
T Consensus 181 ~~~~i~~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~l~~~~~-~~~~~ 258 (454)
T 1qcf_A 181 DAWEIPRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS-MSVEAFLAEANVMKTLQHDKLVKLHAVVT-KEPIY 258 (454)
T ss_dssp TCSBCCGGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTS-BCHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCE
T ss_pred cceeechHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCC-ccHHHHHHHHHHHhhCCCCCEeeEEEEEe-CCccE
Confidence 34455567788889999999999999999888999999997643 34678999999999999999999999986 66789
Q ss_pred EEecccccCcHHHHHHH
Q 004953 697 LPLKLYIYLFIFQFSIK 713 (722)
Q Consensus 697 Lv~ey~~~G~L~~~l~~ 713 (722)
+|||||++|+|.+++++
T Consensus 259 lv~e~~~~g~L~~~l~~ 275 (454)
T 1qcf_A 259 IITEFMAKGSLLDFLKS 275 (454)
T ss_dssp EEECCCTTCBHHHHHHS
T ss_pred EEEeecCCCcHHHHHHh
Confidence 99999999999998764
No 177
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=99.19 E-value=2.3e-11 Score=130.64 Aligned_cols=87 Identities=23% Similarity=0.325 Sum_probs=72.3
Q ss_pred cCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCCChhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEecccccC
Q 004953 627 NSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPLKLYIYL 705 (722)
Q Consensus 627 ~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~ey~~~G 705 (722)
...+.||+|+||.||+|.. .+|..||||+++.......++|.+|+++|.+++|||||++++++...+..++||||+++|
T Consensus 92 ~~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~~~ 171 (373)
T 2x4f_A 92 SKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGG 171 (373)
T ss_dssp EEEEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTC
T ss_pred ecceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCCC
Confidence 3356799999999999986 468999999998766566678999999999999999999999999999999999999999
Q ss_pred cHHHHHHH
Q 004953 706 FIFQFSIK 713 (722)
Q Consensus 706 ~L~~~l~~ 713 (722)
+|.+++.+
T Consensus 172 ~L~~~l~~ 179 (373)
T 2x4f_A 172 ELFDRIID 179 (373)
T ss_dssp EEHHHHHH
T ss_pred cHHHHHHh
Confidence 99887654
No 178
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*
Probab=99.19 E-value=1.7e-11 Score=128.05 Aligned_cols=92 Identities=25% Similarity=0.378 Sum_probs=79.6
Q ss_pred HhhcCccCCCeeecCCCeeEEEEEeCCCcEEEEEEccCCC--hhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEE
Q 004953 621 LATNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGS--LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLP 698 (722)
Q Consensus 621 ~~t~~f~~~~~iG~G~fG~Vy~g~l~~g~~vAVK~l~~~~--~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv 698 (722)
...++|...+.||+|+||+||+|.. +|..||||++.... ....++|.+|++++.+++|||||++++++...+..++|
T Consensus 34 i~~~~y~i~~~lG~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv 112 (309)
T 3p86_A 34 IPWCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIV 112 (309)
T ss_dssp CCGGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTCCEEE
T ss_pred CChhHceeeeEeecCCCeEEEEEEE-CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCceEEE
Confidence 3446688888999999999999987 68899999986543 23346799999999999999999999999999999999
Q ss_pred ecccccCcHHHHHHH
Q 004953 699 LKLYIYLFIFQFSIK 713 (722)
Q Consensus 699 ~ey~~~G~L~~~l~~ 713 (722)
|||+++|+|.+++.+
T Consensus 113 ~e~~~~~~L~~~l~~ 127 (309)
T 3p86_A 113 TEYLSRGSLYRLLHK 127 (309)
T ss_dssp EECCTTCBHHHHHHS
T ss_pred EecCCCCcHHHHHhh
Confidence 999999999888754
No 179
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=99.19 E-value=2e-11 Score=134.64 Aligned_cols=90 Identities=26% Similarity=0.361 Sum_probs=78.6
Q ss_pred hhcCccCCCeeecCCCeeEEEEEeCCCcEEEEEEccCCChhcHHHHHHHHHHHHhcCCCcccceEEEEEeCC-eEEEEec
Q 004953 622 ATNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEG-EQVLPLK 700 (722)
Q Consensus 622 ~t~~f~~~~~iG~G~fG~Vy~g~l~~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~-~~~Lv~e 700 (722)
..++|...+.||+|+||.||+|.. .|+.||||+++... ..++|.+|+++|.+++|||||+++|+|...+ ..++|||
T Consensus 191 ~~~~~~~~~~lG~G~fg~V~~~~~-~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~iv~e 267 (450)
T 1k9a_A 191 NMKELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTE 267 (450)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEESSCT--TSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEEEEE
T ss_pred ChHHeEEEeeecCcCCeeEEEEEe-cCCeEEEEEeCCch--HHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEEEEE
Confidence 445677788999999999999998 47899999997643 4568999999999999999999999998765 7899999
Q ss_pred ccccCcHHHHHHHH
Q 004953 701 LYIYLFIFQFSIKL 714 (722)
Q Consensus 701 y~~~G~L~~~l~~~ 714 (722)
||++|+|.+++++.
T Consensus 268 ~~~~g~L~~~l~~~ 281 (450)
T 1k9a_A 268 YMAKGSLVDYLRSR 281 (450)
T ss_dssp CCTTCBHHHHHHHH
T ss_pred ecCCCcHHHHHHhc
Confidence 99999999988753
No 180
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=99.19 E-value=9e-12 Score=139.04 Aligned_cols=93 Identities=27% Similarity=0.512 Sum_probs=81.3
Q ss_pred HHhhcCccCCCeeecCCCeeEEEEEeCC-CcEEEEEEccCCChhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEE
Q 004953 620 ALATNNFNSSTQIGQGGYGKVYKGILPD-GTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLP 698 (722)
Q Consensus 620 ~~~t~~f~~~~~iG~G~fG~Vy~g~l~~-g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv 698 (722)
+....+|...+.||+|+||.||+|.... +..||||+++... ...++|.+|+++|.+++|||||+++|+|...+..++|
T Consensus 216 ~~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~lv 294 (495)
T 1opk_A 216 EMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII 294 (495)
T ss_dssp BCCGGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEE
T ss_pred ccCHHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCcc-cchHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEEEE
Confidence 3345567778899999999999999864 8899999997543 3457899999999999999999999999999999999
Q ss_pred ecccccCcHHHHHHH
Q 004953 699 LKLYIYLFIFQFSIK 713 (722)
Q Consensus 699 ~ey~~~G~L~~~l~~ 713 (722)
||||++|+|.+++++
T Consensus 295 ~E~~~~g~L~~~l~~ 309 (495)
T 1opk_A 295 TEFMTYGNLLDYLRE 309 (495)
T ss_dssp EECCTTCBHHHHHHH
T ss_pred EEccCCCCHHHHHHh
Confidence 999999999998865
No 181
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.19 E-value=8.6e-10 Score=119.24 Aligned_cols=283 Identities=14% Similarity=0.041 Sum_probs=147.2
Q ss_pred CccceeEEEcCCCCCccccCccccCCCCCCEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEE
Q 004953 80 GYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRI 159 (722)
Q Consensus 80 ~~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 159 (722)
++.+|+.+.+.. +++......|.++++|+.+++..+ ++.+...+|.++.+|+.+.+..+ +.......|.++..++..
T Consensus 69 ~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~ 145 (394)
T 4fs7_A 69 GCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEIT 145 (394)
T ss_dssp TCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEE
T ss_pred CCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccccc
Confidence 345788888864 466566667888888888888754 55455667777888877766543 222333334433322222
Q ss_pred EcccCCCCCCCchhhcCcCCCCEEECCCccccCCCCcCCCCCCccceeecccCCCCCCCCccCCCCCCCcEEECcCCCCC
Q 004953 160 QIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFE 239 (722)
Q Consensus 160 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~ 239 (722)
.... +.......|.++++|+.+.+.++. .......|.++.+|+.+.+..+ ++......|.++..|+.+.+..+...
T Consensus 146 ~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~ 221 (394)
T 4fs7_A 146 IPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY 221 (394)
T ss_dssp CCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE
T ss_pred cCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE
Confidence 1111 111223455555666666655432 2233345555555665555544 33333444555555555444433221
Q ss_pred C--------------------CCcchhccCCCCCcEEEccCCCCccCCCCCCCCCCccEEEccCCCCCccCCCcccc--C
Q 004953 240 G--------------------TTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLDLSSNQLNGSIPPGRLS--L 297 (722)
Q Consensus 240 ~--------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~--~ 297 (722)
- ..-...+..+..|+.+.+..+...-....+..+..++.+....+. ++...+. .
T Consensus 222 i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~----i~~~~F~~~~ 297 (394)
T 4fs7_A 222 LGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI----VPEKTFYGCS 297 (394)
T ss_dssp ECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE----ECTTTTTTCT
T ss_pred eehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceeccCcee----eccccccccc
Confidence 0 001223445555555555554433222235555556555554432 2332222 4
Q ss_pred CcCEEEccCCcCcccCCccCCCCCCCCEEeCCCCcCcccCChhhhhhccCCCCcccEEEccCCcCCCCCCC-C-CCCCce
Q 004953 298 NITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGS-F-NIPPNV 375 (722)
Q Consensus 298 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~ls~N~l~~~~~~-~-~~~~l~ 375 (722)
+|+.+.+..+ ++.....+|.++.+|+.++|.++ ++..-..+|. ++.+|+.+++..| ++.+... + ...+|+
T Consensus 298 ~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~-----~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~ 369 (394)
T 4fs7_A 298 SLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFR-----GCTSLSNINFPLS-LRKIGANAFQGCINLK 369 (394)
T ss_dssp TCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTT-----TCTTCCEECCCTT-CCEECTTTBTTCTTCC
T ss_pred cccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhcc-----CCCCCCEEEECcc-ccEehHHHhhCCCCCC
Confidence 6777777654 55555667777777777777543 4422223333 2356677777655 5555432 2 456666
Q ss_pred EEEccC
Q 004953 376 TVRLRG 381 (722)
Q Consensus 376 ~l~l~~ 381 (722)
.+.+..
T Consensus 370 ~i~lp~ 375 (394)
T 4fs7_A 370 KVELPK 375 (394)
T ss_dssp EEEEEG
T ss_pred EEEECC
Confidence 666543
No 182
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=99.19 E-value=2.8e-11 Score=129.78 Aligned_cols=90 Identities=17% Similarity=0.394 Sum_probs=77.6
Q ss_pred cCccCCCeeecCCCeeEEEEEe--------CCCcEEEEEEccCCCh-hcHHHHHHHHHHHHhc-CCCcccceEEEEEeCC
Q 004953 624 NNFNSSTQIGQGGYGKVYKGIL--------PDGTVVAVKRAQEGSL-QGEKEFLTEIQFLSRL-HHRNLVSLVGYCDEEG 693 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l--------~~g~~vAVK~l~~~~~-~~~~~f~~E~~~l~~l-~H~Niv~l~g~~~~~~ 693 (722)
++|...+.||+|+||+||+|+. .++..||||+++.... ...++|.+|+++|.++ +|||||+++++|..++
T Consensus 81 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~ 160 (370)
T 2psq_A 81 DKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDG 160 (370)
T ss_dssp GGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECSSS
T ss_pred HHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEccCC
Confidence 5677788999999999999985 2356799999976533 3346799999999999 8999999999999999
Q ss_pred eEEEEecccccCcHHHHHHH
Q 004953 694 EQVLPLKLYIYLFIFQFSIK 713 (722)
Q Consensus 694 ~~~Lv~ey~~~G~L~~~l~~ 713 (722)
..++||||+++|+|.+++++
T Consensus 161 ~~~lv~e~~~~g~L~~~l~~ 180 (370)
T 2psq_A 161 PLYVIVEYASKGNLREYLRA 180 (370)
T ss_dssp SCEEEEECCTTCBHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHh
Confidence 99999999999999998865
No 183
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*
Probab=99.18 E-value=4.7e-11 Score=121.73 Aligned_cols=91 Identities=26% Similarity=0.377 Sum_probs=80.2
Q ss_pred hcCccCCCeeecCCCeeEEEEEeCCCcEEEEEEccCCChhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEeccc
Q 004953 623 TNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPLKLY 702 (722)
Q Consensus 623 t~~f~~~~~iG~G~fG~Vy~g~l~~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~ey~ 702 (722)
.++|...+.||+|+||.||+|...++..||||+++.... ..++|.+|++++.+++|||||++++++..++..++||||+
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 85 (268)
T 3sxs_A 7 REEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSM-SEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTEYI 85 (268)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTTB-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEECC
T ss_pred hhheeeeeeeccCCCceEEEEEecCceeEEEEEeccCCC-cHHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEEEcc
Confidence 345777789999999999999998888999999975432 3467999999999999999999999999999999999999
Q ss_pred ccCcHHHHHHHH
Q 004953 703 IYLFIFQFSIKL 714 (722)
Q Consensus 703 ~~G~L~~~l~~~ 714 (722)
++|+|.+++++.
T Consensus 86 ~~~~L~~~l~~~ 97 (268)
T 3sxs_A 86 SNGCLLNYLRSH 97 (268)
T ss_dssp TTCBHHHHHHHH
T ss_pred CCCcHHHHHHHc
Confidence 999999887663
No 184
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...
Probab=99.18 E-value=2.7e-11 Score=125.47 Aligned_cols=90 Identities=28% Similarity=0.414 Sum_probs=77.8
Q ss_pred cCccCCCeeecCCCeeEEEEEe-----CCCcEEEEEEccCCChhcHHHHHHHHHHHHhcCCCcccceEEEEEeC--CeEE
Q 004953 624 NNFNSSTQIGQGGYGKVYKGIL-----PDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEE--GEQV 696 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l-----~~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~--~~~~ 696 (722)
++|+..+.||+|+||+||+|.+ .+++.||||++........+.|.+|++++.+++|||||+++++|... ...+
T Consensus 10 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 89 (295)
T 3ugc_A 10 RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLK 89 (295)
T ss_dssp GGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHTSCE
T ss_pred HHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCceE
Confidence 4567778999999999999985 35889999999876665567899999999999999999999999653 4589
Q ss_pred EEecccccCcHHHHHHH
Q 004953 697 LPLKLYIYLFIFQFSIK 713 (722)
Q Consensus 697 Lv~ey~~~G~L~~~l~~ 713 (722)
+||||+++|+|.+++.+
T Consensus 90 lv~e~~~~~~L~~~l~~ 106 (295)
T 3ugc_A 90 LIMEYLPYGSLRDYLQK 106 (295)
T ss_dssp EEEECCTTCBHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHh
Confidence 99999999999988765
No 185
>3zgw_A Maternal embryonic leucine zipper kinase; transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=99.18 E-value=4.4e-11 Score=126.93 Aligned_cols=91 Identities=23% Similarity=0.333 Sum_probs=78.3
Q ss_pred hcCccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCCCh-hcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEec
Q 004953 623 TNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSL-QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPLK 700 (722)
Q Consensus 623 t~~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~~~-~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~e 700 (722)
.++|...+.||+|+||+||+|.. .+|+.||||++..... ...+.+.+|++++.+++|||||++++++...+..++|||
T Consensus 9 ~~~y~i~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~Ei~~l~~l~hpnIv~l~~~~~~~~~~~lv~E 88 (347)
T 3zgw_A 9 LKYYELHETIGTGGFAKVKLACHILTGEMVAIKIMDKNTLGSDLPRIKTEIEALKNLRHQHICQLYHVLETANKIFMVLE 88 (347)
T ss_dssp TTTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESSCC---CCHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred hcCeEEEEEEEcCCCeEEEEEEECCCCCEEEEEEEEccccchHHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEEEe
Confidence 46688889999999999999985 5789999999865432 233568999999999999999999999999999999999
Q ss_pred ccccCcHHHHHHH
Q 004953 701 LYIYLFIFQFSIK 713 (722)
Q Consensus 701 y~~~G~L~~~l~~ 713 (722)
|+++|+|.+++.+
T Consensus 89 ~~~gg~L~~~l~~ 101 (347)
T 3zgw_A 89 YCPGGELFDYIIS 101 (347)
T ss_dssp CCTTCBHHHHHHH
T ss_pred CCCCCCHHHHHHH
Confidence 9999999888643
No 186
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=99.17 E-value=3.1e-11 Score=127.85 Aligned_cols=93 Identities=26% Similarity=0.428 Sum_probs=80.7
Q ss_pred HhhcCccCCCeeecCCCeeEEEEEeC------CCcEEEEEEccCCCh-hcHHHHHHHHHHHHhcCCCcccceEEEEEeCC
Q 004953 621 LATNNFNSSTQIGQGGYGKVYKGILP------DGTVVAVKRAQEGSL-QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEG 693 (722)
Q Consensus 621 ~~t~~f~~~~~iG~G~fG~Vy~g~l~------~g~~vAVK~l~~~~~-~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~ 693 (722)
...++|...+.||+|+||.||+|... ++..||||+++.... ...+.|.+|++++.+++|||||+++++|..++
T Consensus 44 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~ 123 (343)
T 1luf_A 44 YPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVGK 123 (343)
T ss_dssp CCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSS
T ss_pred ecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEccCC
Confidence 34567888899999999999999974 347899999975433 33467999999999999999999999999999
Q ss_pred eEEEEecccccCcHHHHHHH
Q 004953 694 EQVLPLKLYIYLFIFQFSIK 713 (722)
Q Consensus 694 ~~~Lv~ey~~~G~L~~~l~~ 713 (722)
..++||||+++|+|.+++++
T Consensus 124 ~~~lv~e~~~~~~L~~~l~~ 143 (343)
T 1luf_A 124 PMCLLFEYMAYGDLNEFLRS 143 (343)
T ss_dssp SCEEEEECCTTCBHHHHHHH
T ss_pred ceEEEEecCCCCcHHHHHHH
Confidence 99999999999999998876
No 187
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=99.17 E-value=1.9e-11 Score=134.85 Aligned_cols=94 Identities=23% Similarity=0.376 Sum_probs=80.7
Q ss_pred HHHHhhcCccCCCeeecCCCeeEEEEEeCCCcEEEEEEccCCChhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEE
Q 004953 618 EMALATNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVL 697 (722)
Q Consensus 618 ~~~~~t~~f~~~~~iG~G~fG~Vy~g~l~~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~L 697 (722)
+++...++|...+.||+|+||.||+|...++..||||+++... ...++|.+|+++|.+++|||||+++|+|.+ +..++
T Consensus 178 ~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~i 255 (452)
T 1fmk_A 178 AWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYI 255 (452)
T ss_dssp CSBCCGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEE
T ss_pred ccccChhHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEcC-CceEE
Confidence 3344556788888999999999999999888889999997643 235689999999999999999999999866 67899
Q ss_pred EecccccCcHHHHHHH
Q 004953 698 PLKLYIYLFIFQFSIK 713 (722)
Q Consensus 698 v~ey~~~G~L~~~l~~ 713 (722)
|||||++|+|.+++++
T Consensus 256 v~e~~~~gsL~~~l~~ 271 (452)
T 1fmk_A 256 VTEYMSKGSLLDFLKG 271 (452)
T ss_dssp EECCCTTCBHHHHHSH
T ss_pred EehhhcCCCHHHHHHh
Confidence 9999999999998864
No 188
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=99.17 E-value=1.7e-11 Score=132.95 Aligned_cols=98 Identities=12% Similarity=0.125 Sum_probs=81.8
Q ss_pred HHHHHHhhcCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCCh---hcHHHHHHHHHHHHhcCCCcccceEEEEEe
Q 004953 616 YGEMALATNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL---QGEKEFLTEIQFLSRLHHRNLVSLVGYCDE 691 (722)
Q Consensus 616 ~~~~~~~t~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~~---~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~ 691 (722)
+.++....++|...+.||+|+||+||+|... +++.||||+++.... ...+.+.+|+.++..++|||||++++++.+
T Consensus 61 ~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~ 140 (410)
T 3v8s_A 61 IRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQD 140 (410)
T ss_dssp HHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEEC
T ss_pred HHhcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEE
Confidence 3455556678999999999999999999975 588999999854211 122358899999999999999999999999
Q ss_pred CCeEEEEecccccCcHHHHHHH
Q 004953 692 EGEQVLPLKLYIYLFIFQFSIK 713 (722)
Q Consensus 692 ~~~~~Lv~ey~~~G~L~~~l~~ 713 (722)
++..++|||||++|+|.+++++
T Consensus 141 ~~~~~lV~E~~~gg~L~~~l~~ 162 (410)
T 3v8s_A 141 DRYLYMVMEYMPGGDLVNLMSN 162 (410)
T ss_dssp SSEEEEEECCCTTEEHHHHHHH
T ss_pred CCEEEEEEeCCCCCcHHHHHHc
Confidence 9999999999999999887654
No 189
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}
Probab=99.17 E-value=3.5e-11 Score=127.62 Aligned_cols=93 Identities=22% Similarity=0.314 Sum_probs=79.0
Q ss_pred HHHhhcCccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCC-----ChhcHHHHHHHHHHHHhcCCCcccceEEEEEeC
Q 004953 619 MALATNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEG-----SLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEE 692 (722)
Q Consensus 619 ~~~~t~~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~-----~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~ 692 (722)
+....++|...+.||+|+||.||+|.. .++..||||++... .....+.|.+|++++.+++|||||++++++.+.
T Consensus 21 ~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~ 100 (345)
T 3hko_A 21 LLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDE 100 (345)
T ss_dssp HHHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEECS
T ss_pred hhhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhccC
Confidence 344556788899999999999999986 45889999998532 223346799999999999999999999999999
Q ss_pred CeEEEEecccccCcHHHHH
Q 004953 693 GEQVLPLKLYIYLFIFQFS 711 (722)
Q Consensus 693 ~~~~Lv~ey~~~G~L~~~l 711 (722)
+..++||||+++|+|.+++
T Consensus 101 ~~~~lv~e~~~gg~L~~~l 119 (345)
T 3hko_A 101 QYICLVMELCHGGHLLDKL 119 (345)
T ss_dssp SEEEEEEECCCSCBHHHHE
T ss_pred CeEEEEEeCCCCCcHHHHH
Confidence 9999999999999998765
No 190
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}
Probab=99.17 E-value=2.5e-11 Score=131.82 Aligned_cols=100 Identities=20% Similarity=0.205 Sum_probs=84.6
Q ss_pred ccHHHHHHhhcCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCCh---hcHHHHHHHHHHHHhcCCCcccceEEEE
Q 004953 614 FTYGEMALATNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL---QGEKEFLTEIQFLSRLHHRNLVSLVGYC 689 (722)
Q Consensus 614 ~~~~~~~~~t~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~~---~~~~~f~~E~~~l~~l~H~Niv~l~g~~ 689 (722)
+.+++.....++|...+.||+|+||+||++... +|+.||||+++.... ...+.+.+|..++.+++|||||++++++
T Consensus 51 ~~~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~ 130 (412)
T 2vd5_A 51 VRLKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAF 130 (412)
T ss_dssp HHHHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEE
T ss_pred hhhhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEE
Confidence 345556666788999999999999999999974 689999999964211 1223488999999999999999999999
Q ss_pred EeCCeEEEEecccccCcHHHHHHH
Q 004953 690 DEEGEQVLPLKLYIYLFIFQFSIK 713 (722)
Q Consensus 690 ~~~~~~~Lv~ey~~~G~L~~~l~~ 713 (722)
.+++..++|||||++|+|.+++.+
T Consensus 131 ~~~~~~~lVmE~~~gg~L~~~l~~ 154 (412)
T 2vd5_A 131 QDENYLYLVMEYYVGGDLLTLLSK 154 (412)
T ss_dssp ECSSEEEEEECCCCSCBHHHHHHH
T ss_pred eeCCEEEEEEcCCCCCcHHHHHHh
Confidence 999999999999999999998865
No 191
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}
Probab=99.17 E-value=4.5e-11 Score=125.78 Aligned_cols=70 Identities=23% Similarity=0.400 Sum_probs=58.0
Q ss_pred cCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCCh-hcHHHHHHHHHHHHhcCCCcccceEEEEEeCC
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL-QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEG 693 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~~-~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~ 693 (722)
++|+..+.||+|+||+||+|+.. +|+.||||+++.... ...+.|.+|++++.+++|||||+++++|.+.+
T Consensus 6 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~ 77 (332)
T 3qd2_B 6 TDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETP 77 (332)
T ss_dssp HHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECC
T ss_pred hcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEec
Confidence 45777889999999999999975 789999999965332 34567999999999999999999999987643
No 192
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.17 E-value=6.5e-11 Score=125.74 Aligned_cols=103 Identities=17% Similarity=0.199 Sum_probs=62.1
Q ss_pred EEECCCC-CCccCCCccccCCCCCCEEeccC-CcCCCCCCccCCCCCCCcEEEcccCCCCCCCchhhcCcCCCCEEECCC
Q 004953 110 ILDFMWN-KISGSIPKEIGNIKSLELLLLNG-NELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNN 187 (722)
Q Consensus 110 ~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 187 (722)
.++++++ +++ .+|. +..+++|++|+|++ |.|++..+..|.++++|+.|+|++|+|++..|..|.++++|++|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 3566666 666 3555 66666777777764 666666556666666666666666666666666666666666666666
Q ss_pred ccccCCCCcCCCCCCccceeecccCCCC
Q 004953 188 NSISGQIPPELSRLPSLVHMLLDNNNLT 215 (722)
Q Consensus 188 N~l~~~~~~~l~~l~~L~~L~L~~N~l~ 215 (722)
|+|++..+..|..++ |++|++.+|.+.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 666644444443333 444444444443
No 193
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*
Probab=99.16 E-value=2e-11 Score=130.30 Aligned_cols=101 Identities=20% Similarity=0.424 Sum_probs=84.5
Q ss_pred ccHHHHHHhhcCccCCCeeecCCCeeEEEEEe------CCCcEEEEEEccCCCh-hcHHHHHHHHHHHHhc-CCCcccce
Q 004953 614 FTYGEMALATNNFNSSTQIGQGGYGKVYKGIL------PDGTVVAVKRAQEGSL-QGEKEFLTEIQFLSRL-HHRNLVSL 685 (722)
Q Consensus 614 ~~~~~~~~~t~~f~~~~~iG~G~fG~Vy~g~l------~~g~~vAVK~l~~~~~-~~~~~f~~E~~~l~~l-~H~Niv~l 685 (722)
+...++....++|...+.||+|+||.||+|.. .+++.||||+++.... ...+.|.+|++++.++ +|||||++
T Consensus 12 ~~~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~~ 91 (359)
T 3vhe_A 12 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL 91 (359)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred CCcccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceeee
Confidence 34556666778899999999999999999974 2467899999976433 3346799999999999 89999999
Q ss_pred EEEEEeCC-eEEEEecccccCcHHHHHHHH
Q 004953 686 VGYCDEEG-EQVLPLKLYIYLFIFQFSIKL 714 (722)
Q Consensus 686 ~g~~~~~~-~~~Lv~ey~~~G~L~~~l~~~ 714 (722)
+|+|...+ ..++||||+++|+|.+++.+.
T Consensus 92 ~~~~~~~~~~~~iv~e~~~~g~L~~~l~~~ 121 (359)
T 3vhe_A 92 LGACTKPGGPLMVIVEFCKFGNLSTYLRSK 121 (359)
T ss_dssp EEEECSTTSCCEEEEECCTTEEHHHHHHTT
T ss_pred eeeeecCCCceEEEEEecCCCcHHHHHHhc
Confidence 99998755 489999999999999999865
No 194
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Probab=99.16 E-value=1.1e-10 Score=120.81 Aligned_cols=89 Identities=21% Similarity=0.274 Sum_probs=76.6
Q ss_pred CccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCCChhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEecccc
Q 004953 625 NFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPLKLYI 703 (722)
Q Consensus 625 ~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~ey~~ 703 (722)
++....+||+|+||.||+|.. .++..||||.+........+.|.+|+.++.+++|||||++++++...+..++||||++
T Consensus 23 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~ 102 (295)
T 2clq_A 23 ENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQVP 102 (295)
T ss_dssp TTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCS
T ss_pred CCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEEeCC
Confidence 355567999999999999995 5688999999976555556789999999999999999999999999999999999999
Q ss_pred cCcHHHHHHH
Q 004953 704 YLFIFQFSIK 713 (722)
Q Consensus 704 ~G~L~~~l~~ 713 (722)
+|+|.+++++
T Consensus 103 ~~~L~~~l~~ 112 (295)
T 2clq_A 103 GGSLSALLRS 112 (295)
T ss_dssp EEEHHHHHHH
T ss_pred CCCHHHHHHh
Confidence 9999888765
No 195
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A
Probab=99.16 E-value=4.6e-11 Score=122.86 Aligned_cols=91 Identities=24% Similarity=0.410 Sum_probs=77.4
Q ss_pred hhcCccCCCeeecCCCeeEEEEEeCCCcEEEEEEccCCChhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEecc
Q 004953 622 ATNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPLKL 701 (722)
Q Consensus 622 ~t~~f~~~~~iG~G~fG~Vy~g~l~~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~ey 701 (722)
..++|...+.||+|+||.||+|...++..||||+++.... ..++|.+|++++.+++|||||++++++.+++..++||||
T Consensus 22 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 100 (283)
T 3gen_A 22 DPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM-SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEY 100 (283)
T ss_dssp CGGGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTSB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEECC
T ss_pred CHHHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCCC-CHHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEEEec
Confidence 3456777889999999999999998888999999975432 356799999999999999999999999999999999999
Q ss_pred cccCcHHHHHHH
Q 004953 702 YIYLFIFQFSIK 713 (722)
Q Consensus 702 ~~~G~L~~~l~~ 713 (722)
+++|+|.+++++
T Consensus 101 ~~~~~L~~~l~~ 112 (283)
T 3gen_A 101 MANGCLLNYLRE 112 (283)
T ss_dssp CTTCBHHHHHHC
T ss_pred cCCCcHHHHHHH
Confidence 999999888755
No 196
>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*
Probab=99.15 E-value=5.7e-11 Score=126.82 Aligned_cols=89 Identities=21% Similarity=0.287 Sum_probs=77.3
Q ss_pred cCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCChh------cHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEE
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQ------GEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQV 696 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~~~------~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~ 696 (722)
+.|...+.||+|+||.||++... +|..||||.++..... ..+.+.+|+.++.+++|||||++++++.+.+..+
T Consensus 12 ~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~ 91 (361)
T 2yab_A 12 DFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTDVV 91 (361)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEE
T ss_pred hceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCEEE
Confidence 46777889999999999999964 5899999998653221 2467999999999999999999999999999999
Q ss_pred EEecccccCcHHHHHH
Q 004953 697 LPLKLYIYLFIFQFSI 712 (722)
Q Consensus 697 Lv~ey~~~G~L~~~l~ 712 (722)
+||||+++|+|.+++.
T Consensus 92 lv~e~~~gg~L~~~l~ 107 (361)
T 2yab_A 92 LILELVSGGELFDFLA 107 (361)
T ss_dssp EEEECCCSCBHHHHHT
T ss_pred EEEEcCCCCcHHHHHH
Confidence 9999999999988763
No 197
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Probab=99.15 E-value=4.3e-11 Score=123.39 Aligned_cols=90 Identities=23% Similarity=0.397 Sum_probs=78.3
Q ss_pred cCccCCCeeecCCCeeEEEEEeCC-C-------cEEEEEEccCCChhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeE
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILPD-G-------TVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQ 695 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~~-g-------~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~ 695 (722)
++|...+.||+|+||+||+|.... + ..||+|.+........+.|.+|++++.+++|||||++++++..++..
T Consensus 8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 87 (289)
T 4fvq_A 8 EDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVCGDEN 87 (289)
T ss_dssp GGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEECCTTCC
T ss_pred hHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeCCCC
Confidence 456777899999999999998642 3 47999999765555567899999999999999999999999999999
Q ss_pred EEEecccccCcHHHHHHH
Q 004953 696 VLPLKLYIYLFIFQFSIK 713 (722)
Q Consensus 696 ~Lv~ey~~~G~L~~~l~~ 713 (722)
++||||+++|+|.+++.+
T Consensus 88 ~lv~e~~~~~~L~~~l~~ 105 (289)
T 4fvq_A 88 ILVQEFVKFGSLDTYLKK 105 (289)
T ss_dssp EEEEECCTTCBHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHh
Confidence 999999999999988765
No 198
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=99.15 E-value=2.2e-11 Score=137.19 Aligned_cols=94 Identities=23% Similarity=0.376 Sum_probs=80.7
Q ss_pred HHHHhhcCccCCCeeecCCCeeEEEEEeCCCcEEEEEEccCCChhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEE
Q 004953 618 EMALATNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVL 697 (722)
Q Consensus 618 ~~~~~t~~f~~~~~iG~G~fG~Vy~g~l~~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~L 697 (722)
+++...++|...+.||+|+||.||+|...++..||||+++... ...++|.+|+++|.+++|+|||+++|+|.+ +..++
T Consensus 261 ~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~~~~l 338 (535)
T 2h8h_A 261 AWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYI 338 (535)
T ss_dssp CSBCCGGGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEE
T ss_pred ceecchhhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEee-ccceE
Confidence 3444556678888999999999999999888889999997643 235689999999999999999999999865 67899
Q ss_pred EecccccCcHHHHHHH
Q 004953 698 PLKLYIYLFIFQFSIK 713 (722)
Q Consensus 698 v~ey~~~G~L~~~l~~ 713 (722)
|||||++|+|.+++++
T Consensus 339 v~e~~~~gsL~~~l~~ 354 (535)
T 2h8h_A 339 VTEYMSKGSLLDFLKG 354 (535)
T ss_dssp EECCCTTEEHHHHHSH
T ss_pred eeehhcCCcHHHHHhh
Confidence 9999999999998864
No 199
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=99.15 E-value=4.5e-11 Score=128.07 Aligned_cols=91 Identities=29% Similarity=0.386 Sum_probs=78.3
Q ss_pred cCccCCCeeecCCCeeEEEEEeC------CCcEEEEEEccCC-ChhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEE
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILP------DGTVVAVKRAQEG-SLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQV 696 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~------~g~~vAVK~l~~~-~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~ 696 (722)
++|...+.||+|+||+||+|.+. ++..||||+++.. ......+|.+|+.++.+++|||||++++++...+..+
T Consensus 71 ~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~ 150 (367)
T 3l9p_A 71 KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRF 150 (367)
T ss_dssp GGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE
T ss_pred hHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCE
Confidence 45777789999999999999953 3668999999654 3344567999999999999999999999999999999
Q ss_pred EEecccccCcHHHHHHHH
Q 004953 697 LPLKLYIYLFIFQFSIKL 714 (722)
Q Consensus 697 Lv~ey~~~G~L~~~l~~~ 714 (722)
+||||+++|+|.+++++.
T Consensus 151 lv~e~~~~g~L~~~l~~~ 168 (367)
T 3l9p_A 151 ILLELMAGGDLKSFLRET 168 (367)
T ss_dssp EEEECCTTEEHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHhh
Confidence 999999999999988753
No 200
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Probab=99.15 E-value=4.5e-11 Score=127.27 Aligned_cols=90 Identities=18% Similarity=0.201 Sum_probs=77.1
Q ss_pred cCccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCCC-----hhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEE
Q 004953 624 NNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGS-----LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVL 697 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~~-----~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~L 697 (722)
+.|...+.||+|+||+||+|.. .+|+.||||+++... ....+.|.+|++++.+++|||||++++++.+++..++
T Consensus 24 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~l 103 (351)
T 3c0i_A 24 DVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLYM 103 (351)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred cceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEE
Confidence 3577788999999999999986 468999999985321 1235679999999999999999999999999999999
Q ss_pred EecccccCcHHHHHHH
Q 004953 698 PLKLYIYLFIFQFSIK 713 (722)
Q Consensus 698 v~ey~~~G~L~~~l~~ 713 (722)
||||+++|+|.+++.+
T Consensus 104 v~e~~~g~~L~~~l~~ 119 (351)
T 3c0i_A 104 VFEFMDGADLCFEIVK 119 (351)
T ss_dssp EEECCSSCBHHHHHHH
T ss_pred EEeCCCCCCHHHHHHH
Confidence 9999999999877654
No 201
>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*
Probab=99.15 E-value=7.1e-11 Score=124.17 Aligned_cols=87 Identities=24% Similarity=0.268 Sum_probs=73.1
Q ss_pred cCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCCh-hcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEecc
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL-QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPLKL 701 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~~-~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~ey 701 (722)
++|...+.||+|+||+||+|... +++.||||++..... ...+.+.+|+.++.+++|||||++++++.+++..++||||
T Consensus 7 ~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~ 86 (323)
T 3tki_A 7 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEY 86 (323)
T ss_dssp TCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred hhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEEc
Confidence 46778899999999999999865 689999999865432 2235689999999999999999999999999999999999
Q ss_pred cccCcHHHH
Q 004953 702 YIYLFIFQF 710 (722)
Q Consensus 702 ~~~G~L~~~ 710 (722)
+++|+|.++
T Consensus 87 ~~~~~L~~~ 95 (323)
T 3tki_A 87 CSGGELFDR 95 (323)
T ss_dssp CTTEEGGGG
T ss_pred CCCCcHHHH
Confidence 999998554
No 202
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=99.15 E-value=7.7e-11 Score=126.99 Aligned_cols=89 Identities=21% Similarity=0.298 Sum_probs=78.8
Q ss_pred cCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCChhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEeccc
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPLKLY 702 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~ey~ 702 (722)
+.|...+.||+|+||.||+|... +|..||+|.+......+...+.+|+++|.+++|||||++++++.+.+..++||||+
T Consensus 51 ~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~E~~ 130 (387)
T 1kob_A 51 DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFL 130 (387)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEECC
T ss_pred cceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEEEEcC
Confidence 46778889999999999999864 68899999997665555567999999999999999999999999999999999999
Q ss_pred ccCcHHHHHH
Q 004953 703 IYLFIFQFSI 712 (722)
Q Consensus 703 ~~G~L~~~l~ 712 (722)
++|+|.+++.
T Consensus 131 ~gg~L~~~l~ 140 (387)
T 1kob_A 131 SGGELFDRIA 140 (387)
T ss_dssp CCCBHHHHTT
T ss_pred CCCcHHHHHH
Confidence 9999977653
No 203
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=99.14 E-value=5.1e-11 Score=125.71 Aligned_cols=96 Identities=24% Similarity=0.419 Sum_probs=81.2
Q ss_pred HHHhhcCccCCCeeecCCCeeEEEEEeCC------CcEEEEEEccCCCh-hcHHHHHHHHHHHHhc-CCCcccceEEEEE
Q 004953 619 MALATNNFNSSTQIGQGGYGKVYKGILPD------GTVVAVKRAQEGSL-QGEKEFLTEIQFLSRL-HHRNLVSLVGYCD 690 (722)
Q Consensus 619 ~~~~t~~f~~~~~iG~G~fG~Vy~g~l~~------g~~vAVK~l~~~~~-~~~~~f~~E~~~l~~l-~H~Niv~l~g~~~ 690 (722)
+....++|...+.||+|+||.||+|.... +..||||.++.... ...+.|.+|++++.++ +|||||+++++|.
T Consensus 41 ~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~ 120 (333)
T 2i1m_A 41 WEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACT 120 (333)
T ss_dssp GBCCTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred ccCCHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEe
Confidence 34455778888999999999999998632 24799999976433 3446799999999999 9999999999999
Q ss_pred eCCeEEEEecccccCcHHHHHHHH
Q 004953 691 EEGEQVLPLKLYIYLFIFQFSIKL 714 (722)
Q Consensus 691 ~~~~~~Lv~ey~~~G~L~~~l~~~ 714 (722)
.++..++||||+++|+|.+++.+.
T Consensus 121 ~~~~~~lv~e~~~~g~L~~~l~~~ 144 (333)
T 2i1m_A 121 HGGPVLVITEYCCYGDLLNFLRRK 144 (333)
T ss_dssp SSSSCEEEEECCTTEEHHHHHHHH
T ss_pred cCCceEEEEecCCCCcHHHHHHHh
Confidence 999999999999999999988753
No 204
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*
Probab=99.14 E-value=6.5e-11 Score=124.70 Aligned_cols=90 Identities=22% Similarity=0.301 Sum_probs=72.6
Q ss_pred cCccCCCeeecCCCeeEEEEEe----CCCcEEEEEEccCCCh----hcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeE
Q 004953 624 NNFNSSTQIGQGGYGKVYKGIL----PDGTVVAVKRAQEGSL----QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQ 695 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l----~~g~~vAVK~l~~~~~----~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~ 695 (722)
++|...+.||+|+||.||++.. .+|+.||||+++.... .....+.+|++++.+++|||||++++++...+..
T Consensus 17 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~ 96 (327)
T 3a62_A 17 ECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGKL 96 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSSCE
T ss_pred HHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCCEE
Confidence 4677889999999999999986 4689999999975421 2234688999999999999999999999999999
Q ss_pred EEEecccccCcHHHHHHH
Q 004953 696 VLPLKLYIYLFIFQFSIK 713 (722)
Q Consensus 696 ~Lv~ey~~~G~L~~~l~~ 713 (722)
++||||+++|+|.+++.+
T Consensus 97 ~lv~e~~~~~~L~~~l~~ 114 (327)
T 3a62_A 97 YLILEYLSGGELFMQLER 114 (327)
T ss_dssp EEEEECCTTEEHHHHHHH
T ss_pred EEEEeCCCCCcHHHHHHh
Confidence 999999999999887754
No 205
>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*
Probab=99.14 E-value=7.4e-11 Score=120.87 Aligned_cols=90 Identities=19% Similarity=0.309 Sum_probs=78.7
Q ss_pred cCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCChhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEeccc
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPLKLY 702 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~ey~ 702 (722)
++|...+.||+|+||+||+|... ++..||+|++........+.|.+|++++.+++|||||++++++...+..++||||+
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 88 (277)
T 3f3z_A 9 QYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVMELC 88 (277)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECC
T ss_pred hhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEEEecc
Confidence 45777889999999999999964 47799999987654455678999999999999999999999999999999999999
Q ss_pred ccCcHHHHHHH
Q 004953 703 IYLFIFQFSIK 713 (722)
Q Consensus 703 ~~G~L~~~l~~ 713 (722)
++|+|.+++.+
T Consensus 89 ~~~~L~~~~~~ 99 (277)
T 3f3z_A 89 TGGELFERVVH 99 (277)
T ss_dssp CSCBHHHHHHH
T ss_pred CCCcHHHHHHH
Confidence 99999877544
No 206
>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...
Probab=99.14 E-value=6e-11 Score=125.40 Aligned_cols=90 Identities=19% Similarity=0.157 Sum_probs=77.7
Q ss_pred cCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCC---hhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEe
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS---LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPL 699 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~---~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~ 699 (722)
++|...+.||+|+||+||++... +|+.||||+++... ....+.+.+|++++.+++|||||++++++.+.+..++||
T Consensus 5 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv~ 84 (337)
T 1o6l_A 5 NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVM 84 (337)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEEEE
Confidence 46777899999999999999864 68999999986431 223457899999999999999999999999999999999
Q ss_pred cccccCcHHHHHHH
Q 004953 700 KLYIYLFIFQFSIK 713 (722)
Q Consensus 700 ey~~~G~L~~~l~~ 713 (722)
||+++|+|.+++.+
T Consensus 85 E~~~gg~L~~~l~~ 98 (337)
T 1o6l_A 85 EYANGGELFFHLSR 98 (337)
T ss_dssp ECCTTCBHHHHHHH
T ss_pred eCCCCCcHHHHHHh
Confidence 99999999887654
No 207
>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}
Probab=99.14 E-value=1e-10 Score=121.15 Aligned_cols=90 Identities=21% Similarity=0.226 Sum_probs=77.6
Q ss_pred cCccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCCC---hhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEe
Q 004953 624 NNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGS---LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPL 699 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~~---~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~ 699 (722)
++|...+.||+|+||.||+|.. .++..||||.+.... ....+.|.+|+.++.+++|||||++++++..++..++||
T Consensus 11 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 90 (294)
T 4eqm_A 11 ERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLVM 90 (294)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEEE
T ss_pred ccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEEE
Confidence 4577788999999999999985 468999999985432 233467999999999999999999999999999999999
Q ss_pred cccccCcHHHHHHH
Q 004953 700 KLYIYLFIFQFSIK 713 (722)
Q Consensus 700 ey~~~G~L~~~l~~ 713 (722)
||+++|+|.+++.+
T Consensus 91 e~~~g~~L~~~l~~ 104 (294)
T 4eqm_A 91 EYIEGPTLSEYIES 104 (294)
T ss_dssp ECCCSCBHHHHHHH
T ss_pred eCCCCCCHHHHHHh
Confidence 99999999888754
No 208
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A
Probab=99.14 E-value=1.7e-10 Score=120.66 Aligned_cols=89 Identities=20% Similarity=0.224 Sum_probs=76.7
Q ss_pred CccC-CCeeecCCCeeEEEEEe-CCCcEEEEEEccCCChhcHHHHHHHHHHHHhc-CCCcccceEEEEEeCCeEEEEecc
Q 004953 625 NFNS-STQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRL-HHRNLVSLVGYCDEEGEQVLPLKL 701 (722)
Q Consensus 625 ~f~~-~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l-~H~Niv~l~g~~~~~~~~~Lv~ey 701 (722)
.|.. .+.||+|+||+||+|.. .+++.||||+++.......+.+.+|++++.++ +|||||++++++..++..++||||
T Consensus 13 ~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e~ 92 (316)
T 2ac3_A 13 VYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLVFEK 92 (316)
T ss_dssp SCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred eEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEEEc
Confidence 3444 36899999999999984 46899999999765545567899999999995 899999999999999999999999
Q ss_pred cccCcHHHHHHH
Q 004953 702 YIYLFIFQFSIK 713 (722)
Q Consensus 702 ~~~G~L~~~l~~ 713 (722)
+++|+|.+++.+
T Consensus 93 ~~~~~L~~~l~~ 104 (316)
T 2ac3_A 93 MRGGSILSHIHK 104 (316)
T ss_dssp CTTCBHHHHHHH
T ss_pred CCCCcHHHHHhc
Confidence 999999888754
No 209
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=99.13 E-value=8.1e-11 Score=119.74 Aligned_cols=89 Identities=26% Similarity=0.430 Sum_probs=79.2
Q ss_pred cCccCCCeeecCCCeeEEEEEeCCCcEEEEEEccCCChhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEecccc
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPLKLYI 703 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~ey~~ 703 (722)
++|...+.||+|+||.||+|...++..||||+++.... ..+++.+|++++.+++||||+++++++..++..++||||++
T Consensus 8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~ 86 (267)
T 3t9t_A 8 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM-SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEFME 86 (267)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTTB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEECCCT
T ss_pred hheeeeeEecCCCceeEEEEEecCCCeEEEEEccccCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEEeCCC
Confidence 45677789999999999999988888999999975432 34679999999999999999999999999999999999999
Q ss_pred cCcHHHHHHH
Q 004953 704 YLFIFQFSIK 713 (722)
Q Consensus 704 ~G~L~~~l~~ 713 (722)
+|+|.+++++
T Consensus 87 ~~~L~~~~~~ 96 (267)
T 3t9t_A 87 HGCLSDYLRT 96 (267)
T ss_dssp TCBHHHHHHH
T ss_pred CCcHHHHHhh
Confidence 9999988765
No 210
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*
Probab=99.13 E-value=3.2e-11 Score=122.95 Aligned_cols=89 Identities=19% Similarity=0.322 Sum_probs=76.7
Q ss_pred cCccCCCeeecCCCeeEEEEEeCCCcEEEEEEccCCC--hhcHHHHHHHHHHHHhcCCCcccceEEEEEeC--CeEEEEe
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGS--LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEE--GEQVLPL 699 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~~g~~vAVK~l~~~~--~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~--~~~~Lv~ 699 (722)
++|...+.||+|+||.||+|+. +|..||||+++... ....+.|.+|++++.+++|||||+++++|... +..++||
T Consensus 10 ~~y~~~~~lg~G~~g~V~~~~~-~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~ 88 (271)
T 3kmu_A 10 KQLNFLTKLNENHSGELWKGRW-QGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLIT 88 (271)
T ss_dssp GGCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEEE
T ss_pred HHhHHHHHhcCCCcceEEEEEE-CCeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEeee
Confidence 3566778999999999999998 48899999997542 33446799999999999999999999999876 7789999
Q ss_pred cccccCcHHHHHHH
Q 004953 700 KLYIYLFIFQFSIK 713 (722)
Q Consensus 700 ey~~~G~L~~~l~~ 713 (722)
||+++|+|.+++.+
T Consensus 89 e~~~~~~L~~~l~~ 102 (271)
T 3kmu_A 89 HWMPYGSLYNVLHE 102 (271)
T ss_dssp ECCTTCBHHHHHHS
T ss_pred cccCCCcHHHHHhh
Confidence 99999999888754
No 211
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.13 E-value=7.3e-13 Score=141.88 Aligned_cols=162 Identities=15% Similarity=0.157 Sum_probs=73.7
Q ss_pred CCCCEEECCCCCCccCCCccccCC-----CCCCEEeccCCcCCCCCCccC-CCCCCCcEEEcccCCCCCCCchhhc----
Q 004953 106 SYLTILDFMWNKISGSIPKEIGNI-----KSLELLLLNGNELTGSLPEEL-GYLPKLDRIQIDQNYISGSLPKSFA---- 175 (722)
Q Consensus 106 ~~L~~L~Ls~n~l~~~~p~~~~~l-----~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~~~---- 175 (722)
+.|++|+|++|.++......+..+ ++|++|+|++|.++......+ ..+++|++|+|++|.++......+.
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 456666666666654333333222 456666666665542211111 1234555555555555433222221
Q ss_pred -CcCCCCEEECCCccccCCCCcCCCCCCccceeecccCCCCCCCCccCCCCCCCcEEECcCCCCCCC---CcchhccCCC
Q 004953 176 -NLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGT---TIPASYSNMS 251 (722)
Q Consensus 176 -~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~---~~~~~~~~l~ 251 (722)
..++|++|+|++|.++..... .++..+..+++|++|+|++|.++.. .+...+...+
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~--------------------~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~ 211 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVA--------------------VLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNR 211 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHH--------------------HHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCS
T ss_pred hcCCccceeeCCCCCCChHHHH--------------------HHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCC
Confidence 234455555555544321000 1111223344444444444444320 0123344455
Q ss_pred CCcEEEccCCCCccCCC-----CCCCCCCccEEEccCCCCC
Q 004953 252 KLLKLSLRNCSLQGPMP-----DLSRIPNLGYLDLSSNQLN 287 (722)
Q Consensus 252 ~L~~L~L~~N~l~~~~~-----~l~~l~~L~~L~Ls~N~l~ 287 (722)
+|+.|+|++|.|++... .+...++|++|+|++|.|+
T Consensus 212 ~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 212 QLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp CCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred CcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 56666666665543211 1334566777777777765
No 212
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*
Probab=99.13 E-value=4.1e-11 Score=125.10 Aligned_cols=93 Identities=26% Similarity=0.422 Sum_probs=79.5
Q ss_pred hhcCccCCCeeecCCCeeEEEEEe------CCCcEEEEEEccCCC-hhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCe
Q 004953 622 ATNNFNSSTQIGQGGYGKVYKGIL------PDGTVVAVKRAQEGS-LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGE 694 (722)
Q Consensus 622 ~t~~f~~~~~iG~G~fG~Vy~g~l------~~g~~vAVK~l~~~~-~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~ 694 (722)
..++|...+.||+|+||.||+|.. .++..||||+++... ....+.+.+|++++.+++|||||++++++...+.
T Consensus 21 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~ 100 (314)
T 2ivs_A 21 PRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGP 100 (314)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSS
T ss_pred chhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEecCCc
Confidence 345677788999999999999985 235789999997543 3344679999999999999999999999999999
Q ss_pred EEEEecccccCcHHHHHHHH
Q 004953 695 QVLPLKLYIYLFIFQFSIKL 714 (722)
Q Consensus 695 ~~Lv~ey~~~G~L~~~l~~~ 714 (722)
.++||||+++|+|.+++.+.
T Consensus 101 ~~lv~e~~~~~~L~~~l~~~ 120 (314)
T 2ivs_A 101 LLLIVEYAKYGSLRGFLRES 120 (314)
T ss_dssp CEEEEECCTTCBHHHHHHHT
T ss_pred eEEEEeecCCCCHHHHHHHH
Confidence 99999999999999998753
No 213
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...
Probab=99.13 E-value=3.9e-11 Score=125.85 Aligned_cols=101 Identities=24% Similarity=0.400 Sum_probs=85.2
Q ss_pred ccHHHHHHhhcCccCCCeeecCCCeeEEEEEeC------CCcEEEEEEccCCCh-hcHHHHHHHHHHHHhcCCCcccceE
Q 004953 614 FTYGEMALATNNFNSSTQIGQGGYGKVYKGILP------DGTVVAVKRAQEGSL-QGEKEFLTEIQFLSRLHHRNLVSLV 686 (722)
Q Consensus 614 ~~~~~~~~~t~~f~~~~~iG~G~fG~Vy~g~l~------~g~~vAVK~l~~~~~-~~~~~f~~E~~~l~~l~H~Niv~l~ 686 (722)
+..+++....++|...+.||+|+||.||+|... .+..||||.+..... ....+|.+|++++.+++||||++++
T Consensus 15 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~ 94 (322)
T 1p4o_A 15 YVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLL 94 (322)
T ss_dssp CCCCTTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEE
T ss_pred cChhhhcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeE
Confidence 444555666778888999999999999999853 367899999975432 3345799999999999999999999
Q ss_pred EEEEeCCeEEEEecccccCcHHHHHHHH
Q 004953 687 GYCDEEGEQVLPLKLYIYLFIFQFSIKL 714 (722)
Q Consensus 687 g~~~~~~~~~Lv~ey~~~G~L~~~l~~~ 714 (722)
+++...+..++||||+++|+|.+++++.
T Consensus 95 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~ 122 (322)
T 1p4o_A 95 GVVSQGQPTLVIMELMTRGDLKSYLRSL 122 (322)
T ss_dssp EEECSSSSCEEEEECCTTCBHHHHHHHH
T ss_pred EEEccCCccEEEEEeCCCCcHHHHHHHh
Confidence 9999999999999999999999988764
No 214
>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7
Probab=99.13 E-value=1.3e-10 Score=121.93 Aligned_cols=88 Identities=19% Similarity=0.238 Sum_probs=77.2
Q ss_pred cCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCChhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEeccc
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPLKLY 702 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~ey~ 702 (722)
++|...+.||+|+||.||+|... +|..||+|.+.... .....+.+|++++.+++|||||++++++.+.+..++||||+
T Consensus 5 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~-~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~~ 83 (321)
T 1tki_A 5 EKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG-TDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEFI 83 (321)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCT-HHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred hceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecCc-ccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEEEEeC
Confidence 56777889999999999999864 58899999987543 33457899999999999999999999999999999999999
Q ss_pred ccCcHHHHHH
Q 004953 703 IYLFIFQFSI 712 (722)
Q Consensus 703 ~~G~L~~~l~ 712 (722)
++|+|.+++.
T Consensus 84 ~g~~L~~~l~ 93 (321)
T 1tki_A 84 SGLDIFERIN 93 (321)
T ss_dssp CCCBHHHHHT
T ss_pred CCCCHHHHHH
Confidence 9999988764
No 215
>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}
Probab=99.13 E-value=8.3e-11 Score=123.81 Aligned_cols=89 Identities=19% Similarity=0.326 Sum_probs=76.9
Q ss_pred cCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCChh------cHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEE
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQ------GEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQV 696 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~~~------~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~ 696 (722)
+.|...+.||+|+||.||++... +|..||||.++..... ..+.+.+|++++.+++|||||++++++...+..+
T Consensus 11 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~ 90 (326)
T 2y0a_A 11 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVI 90 (326)
T ss_dssp HHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred cceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence 34777889999999999999964 5899999998653221 3567999999999999999999999999999999
Q ss_pred EEecccccCcHHHHHH
Q 004953 697 LPLKLYIYLFIFQFSI 712 (722)
Q Consensus 697 Lv~ey~~~G~L~~~l~ 712 (722)
+||||+++|+|.+++.
T Consensus 91 lv~e~~~~~~L~~~l~ 106 (326)
T 2y0a_A 91 LILELVAGGELFDFLA 106 (326)
T ss_dssp EEEECCCSCBHHHHHT
T ss_pred EEEEcCCCCCHHHHHH
Confidence 9999999999988763
No 216
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Probab=99.12 E-value=9.7e-11 Score=125.17 Aligned_cols=88 Identities=20% Similarity=0.277 Sum_probs=76.9
Q ss_pred cCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCC--hhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEec
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS--LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPLK 700 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~--~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~e 700 (722)
++|...+.||+|+||.||+|... +|..||||.+.... ....+.+.+|++++.+++|||||++++++.+++..++|||
T Consensus 29 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~e 108 (362)
T 2bdw_A 29 DNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVFD 108 (362)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred cCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEe
Confidence 46888899999999999999864 58999999996542 2334579999999999999999999999999999999999
Q ss_pred ccccCcHHHHH
Q 004953 701 LYIYLFIFQFS 711 (722)
Q Consensus 701 y~~~G~L~~~l 711 (722)
|+++|+|.+++
T Consensus 109 ~~~gg~L~~~l 119 (362)
T 2bdw_A 109 LVTGGELFEDI 119 (362)
T ss_dssp CCCSCBHHHHH
T ss_pred cCCCCCHHHHH
Confidence 99999997765
No 217
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Probab=99.12 E-value=2.2e-10 Score=117.67 Aligned_cols=91 Identities=21% Similarity=0.292 Sum_probs=79.4
Q ss_pred cCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCC--hhcHHHHHHHHHHHHhc-CCCcccceEEEEEeCCeEEEEe
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS--LQGEKEFLTEIQFLSRL-HHRNLVSLVGYCDEEGEQVLPL 699 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~--~~~~~~f~~E~~~l~~l-~H~Niv~l~g~~~~~~~~~Lv~ 699 (722)
++|...+.||+|+||+||+|... +++.||||+++... .....++.+|+..+.++ +|||||++++++.+++..++||
T Consensus 11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~lv~ 90 (289)
T 1x8b_A 11 TEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLIQN 90 (289)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEEEE
T ss_pred chhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEEE
Confidence 45777889999999999999975 68999999987532 23456789999999999 9999999999999999999999
Q ss_pred cccccCcHHHHHHHH
Q 004953 700 KLYIYLFIFQFSIKL 714 (722)
Q Consensus 700 ey~~~G~L~~~l~~~ 714 (722)
||+++|+|.+++.+.
T Consensus 91 e~~~~~~L~~~l~~~ 105 (289)
T 1x8b_A 91 EYCNGGSLADAISEN 105 (289)
T ss_dssp ECCTTCBHHHHHHHH
T ss_pred EecCCCcHHHHHHhh
Confidence 999999999988653
No 218
>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A
Probab=99.11 E-value=1.4e-10 Score=120.62 Aligned_cols=90 Identities=19% Similarity=0.286 Sum_probs=76.0
Q ss_pred cCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCChhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEeccc
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPLKLY 702 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~ey~ 702 (722)
++|...+.||+|+||+||++... +|+.||||.++.......+.+.+|++++.+++||||+++++++...+..++||||+
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 88 (304)
T 2jam_A 9 KTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQLV 88 (304)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCC
T ss_pred ccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEEEEcC
Confidence 45777889999999999999964 68999999997654444567999999999999999999999999999999999999
Q ss_pred ccCcHHHHHHH
Q 004953 703 IYLFIFQFSIK 713 (722)
Q Consensus 703 ~~G~L~~~l~~ 713 (722)
++|+|.+++.+
T Consensus 89 ~~~~L~~~l~~ 99 (304)
T 2jam_A 89 SGGELFDRILE 99 (304)
T ss_dssp CSCBHHHHHHH
T ss_pred CCccHHHHHHH
Confidence 99999887654
No 219
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Probab=99.11 E-value=1.6e-10 Score=119.99 Aligned_cols=91 Identities=21% Similarity=0.357 Sum_probs=77.2
Q ss_pred hcCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCChhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEecc
Q 004953 623 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPLKL 701 (722)
Q Consensus 623 t~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~ey 701 (722)
.+.|...+.||+|+||.||+|... +|..||+|.+........+.|.+|++++.+++||||+++++++..++..++||||
T Consensus 18 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 97 (302)
T 2j7t_A 18 NEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMIEF 97 (302)
T ss_dssp GGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEEEEC
T ss_pred ccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEEEEe
Confidence 356777889999999999999975 5889999999766555567899999999999999999999999999999999999
Q ss_pred cccCcHHHHHHH
Q 004953 702 YIYLFIFQFSIK 713 (722)
Q Consensus 702 ~~~G~L~~~l~~ 713 (722)
+++|+|.+++.+
T Consensus 98 ~~~~~l~~~~~~ 109 (302)
T 2j7t_A 98 CPGGAVDAIMLE 109 (302)
T ss_dssp CTTEEHHHHHHH
T ss_pred CCCCcHHHHHHh
Confidence 999999887654
No 220
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.11 E-value=1.1e-12 Score=140.56 Aligned_cols=134 Identities=13% Similarity=0.143 Sum_probs=93.4
Q ss_pred cceeEEEcCCCCCccccCccccC-----CCCCCEEECCCCCCccCCCccc-cCCCCCCEEeccCCcCCCCCCccC-----
Q 004953 82 LHLRELQLLNLNLSGNLSPEIGR-----LSYLTILDFMWNKISGSIPKEI-GNIKSLELLLLNGNELTGSLPEEL----- 150 (722)
Q Consensus 82 ~~l~~L~L~~~~l~~~~~~~~~~-----l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~~----- 150 (722)
.+++.|++++|.++......+.. .++|++|+|++|.++......+ ..+++|++|+|++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 47999999999998654444433 3799999999999975443333 356789999999999975433333
Q ss_pred CCCCCCcEEEcccCCCCCC----CchhhcCcCCCCEEECCCccccCCC----CcCCCCCCccceeecccCCCC
Q 004953 151 GYLPKLDRIQIDQNYISGS----LPKSFANLNKTRHFHMNNNSISGQI----PPELSRLPSLVHMLLDNNNLT 215 (722)
Q Consensus 151 ~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~----~~~l~~l~~L~~L~L~~N~l~ 215 (722)
...++|++|+|++|.++.. ++..+..+++|++|+|++|.++... +..+...++|++|+|++|.|+
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 3568899999999998753 3344567788888888888876421 233344445555555555544
No 221
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...
Probab=99.11 E-value=4.7e-11 Score=123.09 Aligned_cols=92 Identities=27% Similarity=0.517 Sum_probs=80.3
Q ss_pred HhhcCccCCCeeecCCCeeEEEEEeCC-CcEEEEEEccCCChhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEe
Q 004953 621 LATNNFNSSTQIGQGGYGKVYKGILPD-GTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPL 699 (722)
Q Consensus 621 ~~t~~f~~~~~iG~G~fG~Vy~g~l~~-g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~ 699 (722)
...++|...+.||+|+||.||+|.... +..||||.+.... ...++|.+|++++.+++||||+++++++..++..++||
T Consensus 10 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~ 88 (288)
T 3kfa_A 10 MERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIIT 88 (288)
T ss_dssp CCGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCS-THHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEE
T ss_pred ccccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCH-HHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCEEEEE
Confidence 345668888899999999999999754 8899999997543 34567999999999999999999999999999999999
Q ss_pred cccccCcHHHHHHH
Q 004953 700 KLYIYLFIFQFSIK 713 (722)
Q Consensus 700 ey~~~G~L~~~l~~ 713 (722)
||+++|+|.+++++
T Consensus 89 e~~~~~~L~~~~~~ 102 (288)
T 3kfa_A 89 EFMTYGNLLDYLRE 102 (288)
T ss_dssp ECCTTEEHHHHHHH
T ss_pred EcCCCCcHHHHHHh
Confidence 99999999988764
No 222
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=99.11 E-value=8.6e-11 Score=124.92 Aligned_cols=88 Identities=25% Similarity=0.289 Sum_probs=70.5
Q ss_pred hcCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCChhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEecc
Q 004953 623 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPLKL 701 (722)
Q Consensus 623 t~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~ey 701 (722)
.+.|...+.||+|+||+||+|... +++.||||+++... ..+.+.+|++++.+++|||||++++++...+..++||||
T Consensus 52 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~ 129 (349)
T 2w4o_A 52 SDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV--DKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLVLEL 129 (349)
T ss_dssp GGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC------------CHHHHHCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred cCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch--hHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEEEEe
Confidence 356777889999999999999975 57899999997532 345688999999999999999999999999999999999
Q ss_pred cccCcHHHHHH
Q 004953 702 YIYLFIFQFSI 712 (722)
Q Consensus 702 ~~~G~L~~~l~ 712 (722)
+++|+|.+++.
T Consensus 130 ~~~~~L~~~l~ 140 (349)
T 2w4o_A 130 VTGGELFDRIV 140 (349)
T ss_dssp CCSCBHHHHHT
T ss_pred CCCCCHHHHHH
Confidence 99999987753
No 223
>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A
Probab=99.11 E-value=1.7e-10 Score=123.30 Aligned_cols=90 Identities=17% Similarity=0.158 Sum_probs=78.3
Q ss_pred hcCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCChhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEecc
Q 004953 623 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPLKL 701 (722)
Q Consensus 623 t~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~ey 701 (722)
.++|...+.||+|+||+||++... +++.||||++..... ..+.+.+|+.++.+++|||||++++++.+.+..++||||
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~ 97 (361)
T 3uc3_A 19 SDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAA-IDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIIMEY 97 (361)
T ss_dssp TTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTT-SCHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred CCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCcc-ccHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEEEEe
Confidence 356778889999999999999964 689999999975432 235789999999999999999999999999999999999
Q ss_pred cccCcHHHHHHH
Q 004953 702 YIYLFIFQFSIK 713 (722)
Q Consensus 702 ~~~G~L~~~l~~ 713 (722)
+++|+|.+++.+
T Consensus 98 ~~~~~L~~~l~~ 109 (361)
T 3uc3_A 98 ASGGELYERICN 109 (361)
T ss_dssp CCSCBHHHHHHH
T ss_pred CCCCCHHHHHHh
Confidence 999999887643
No 224
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*
Probab=99.11 E-value=1.5e-10 Score=125.09 Aligned_cols=90 Identities=17% Similarity=0.127 Sum_probs=78.2
Q ss_pred cCccCCCeeecC--CCeeEEEEEeC-CCcEEEEEEccCCC--hhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEE
Q 004953 624 NNFNSSTQIGQG--GYGKVYKGILP-DGTVVAVKRAQEGS--LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLP 698 (722)
Q Consensus 624 ~~f~~~~~iG~G--~fG~Vy~g~l~-~g~~vAVK~l~~~~--~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv 698 (722)
++|...+.||+| +||+||+|... +|+.||||+++... ....+.+.+|++++.+++|||||++++++..++..++|
T Consensus 25 ~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 104 (389)
T 3gni_B 25 GCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVV 104 (389)
T ss_dssp GGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred CcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEEEEE
Confidence 457778899999 99999999975 68999999996432 23345688999999999999999999999999999999
Q ss_pred ecccccCcHHHHHHH
Q 004953 699 LKLYIYLFIFQFSIK 713 (722)
Q Consensus 699 ~ey~~~G~L~~~l~~ 713 (722)
||||++|+|.+++.+
T Consensus 105 ~e~~~~~~L~~~l~~ 119 (389)
T 3gni_B 105 TSFMAYGSAKDLICT 119 (389)
T ss_dssp EECCTTCBHHHHHHH
T ss_pred EEccCCCCHHHHHhh
Confidence 999999999888754
No 225
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Probab=99.11 E-value=6.8e-11 Score=123.40 Aligned_cols=93 Identities=25% Similarity=0.425 Sum_probs=79.9
Q ss_pred hhcCccCCCeeecCCCeeEEEEEe------CCCcEEEEEEccCCCh-hcHHHHHHHHHHHHhc-CCCcccceEEEEEeCC
Q 004953 622 ATNNFNSSTQIGQGGYGKVYKGIL------PDGTVVAVKRAQEGSL-QGEKEFLTEIQFLSRL-HHRNLVSLVGYCDEEG 693 (722)
Q Consensus 622 ~t~~f~~~~~iG~G~fG~Vy~g~l------~~g~~vAVK~l~~~~~-~~~~~f~~E~~~l~~l-~H~Niv~l~g~~~~~~ 693 (722)
..++|...+.||+|+||.||+|+. .++..||||.++.... ...+.|.+|++++.++ +|||||+++++|..++
T Consensus 21 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~ 100 (313)
T 1t46_A 21 PRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGG 100 (313)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred ChhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecCC
Confidence 345677889999999999999984 3467899999975433 3446799999999999 9999999999999999
Q ss_pred eEEEEecccccCcHHHHHHHH
Q 004953 694 EQVLPLKLYIYLFIFQFSIKL 714 (722)
Q Consensus 694 ~~~Lv~ey~~~G~L~~~l~~~ 714 (722)
..++||||+++|+|.+++.+.
T Consensus 101 ~~~lv~e~~~~~~L~~~l~~~ 121 (313)
T 1t46_A 101 PTLVITEYCCYGDLLNFLRRK 121 (313)
T ss_dssp SCEEEEECCTTEEHHHHHHHT
T ss_pred CcEEEEecCCCCCHHHHHHhc
Confidence 999999999999999988753
No 226
>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}
Probab=99.11 E-value=1.3e-10 Score=121.83 Aligned_cols=90 Identities=23% Similarity=0.338 Sum_probs=76.5
Q ss_pred cCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCC-hhcHHHHHHHHHHHHhcCCCcccceEEEEEeCC--eEEEEe
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS-LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEG--EQVLPL 699 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~-~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~--~~~Lv~ 699 (722)
+.|...+.||+|+||+||+|... +|+.||||+++... ....+.+.+|++++.+++|||||++++++...+ ..++||
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~ 88 (319)
T 4euu_A 9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIM 88 (319)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEE
T ss_pred CCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEEEE
Confidence 35677789999999999999975 48999999996533 233467899999999999999999999998755 779999
Q ss_pred cccccCcHHHHHHH
Q 004953 700 KLYIYLFIFQFSIK 713 (722)
Q Consensus 700 ey~~~G~L~~~l~~ 713 (722)
||+++|+|.+++++
T Consensus 89 e~~~~~~L~~~l~~ 102 (319)
T 4euu_A 89 EFCPCGSLYTVLEE 102 (319)
T ss_dssp ECCTTCBHHHHHHS
T ss_pred eCCCCCCHHHHHHH
Confidence 99999999888765
No 227
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7
Probab=99.11 E-value=9.7e-11 Score=122.80 Aligned_cols=90 Identities=18% Similarity=0.207 Sum_probs=77.6
Q ss_pred cCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCC---hhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEe
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS---LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPL 699 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~---~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~ 699 (722)
++|...+.||+|+||+||++... +|+.||||+++... ....+.+.+|+.++..++|||||++++++.+.+..++||
T Consensus 6 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv~ 85 (318)
T 1fot_A 6 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIM 85 (318)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEEE
T ss_pred HHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEEE
Confidence 45777889999999999999864 68999999986431 123456889999999999999999999999999999999
Q ss_pred cccccCcHHHHHHH
Q 004953 700 KLYIYLFIFQFSIK 713 (722)
Q Consensus 700 ey~~~G~L~~~l~~ 713 (722)
||+++|+|.+++++
T Consensus 86 e~~~gg~L~~~l~~ 99 (318)
T 1fot_A 86 DYIEGGELFSLLRK 99 (318)
T ss_dssp CCCCSCBHHHHHHH
T ss_pred eCCCCCCHHHHHHH
Confidence 99999999888764
No 228
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}
Probab=99.11 E-value=1.9e-10 Score=118.47 Aligned_cols=90 Identities=14% Similarity=0.180 Sum_probs=78.0
Q ss_pred CccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCCC-hhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEeccc
Q 004953 625 NFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGS-LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPLKLY 702 (722)
Q Consensus 625 ~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~~-~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~ey~ 702 (722)
.|...+.||+|+||.||++.. .++..||||++.... ....+.+.+|++++.+++|||||++++++.+.+..++||||+
T Consensus 23 ~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~ 102 (285)
T 3is5_A 23 LFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVMETC 102 (285)
T ss_dssp HEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCC
T ss_pred heeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEEEEeC
Confidence 477788999999999999986 458899999986432 234567999999999999999999999999999999999999
Q ss_pred ccCcHHHHHHHH
Q 004953 703 IYLFIFQFSIKL 714 (722)
Q Consensus 703 ~~G~L~~~l~~~ 714 (722)
++|+|.+++.+.
T Consensus 103 ~~~~L~~~l~~~ 114 (285)
T 3is5_A 103 EGGELLERIVSA 114 (285)
T ss_dssp SCCBHHHHHHHH
T ss_pred CCCcHHHHHHhh
Confidence 999998887543
No 229
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*
Probab=99.10 E-value=1.8e-10 Score=121.19 Aligned_cols=90 Identities=24% Similarity=0.333 Sum_probs=78.4
Q ss_pred cCccCCCeeecCCCeeEEEEEe-----CCCcEEEEEEccCCChhcHHHHHHHHHHHHhcCCCcccceEEEEEe--CCeEE
Q 004953 624 NNFNSSTQIGQGGYGKVYKGIL-----PDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDE--EGEQV 696 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l-----~~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~--~~~~~ 696 (722)
++|...+.||+|+||.||++.+ .++..||||++........+.|.+|++++.+++||||+++++++.. .+..+
T Consensus 23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~ 102 (327)
T 3lxl_A 23 RHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSLR 102 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCEEE
T ss_pred hhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCceEE
Confidence 4577778999999999999984 3578999999987666666789999999999999999999999874 56689
Q ss_pred EEecccccCcHHHHHHH
Q 004953 697 LPLKLYIYLFIFQFSIK 713 (722)
Q Consensus 697 Lv~ey~~~G~L~~~l~~ 713 (722)
+||||+++|+|.+++.+
T Consensus 103 lv~e~~~~~~L~~~l~~ 119 (327)
T 3lxl_A 103 LVMEYLPSGCLRDFLQR 119 (327)
T ss_dssp EEEECCTTCBHHHHHHH
T ss_pred EEEeecCCCCHHHHHHh
Confidence 99999999999988765
No 230
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*
Probab=99.10 E-value=9.1e-11 Score=123.25 Aligned_cols=89 Identities=18% Similarity=0.130 Sum_probs=74.4
Q ss_pred hcCccCCCeeecCCCeeEEEEEeCCCcEEEEEEccCCChhcHHHHHHHHHHHHhcCCCcccceEEEEEeCC----eEEEE
Q 004953 623 TNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEG----EQVLP 698 (722)
Q Consensus 623 t~~f~~~~~iG~G~fG~Vy~g~l~~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~----~~~Lv 698 (722)
.++|...+.||+|+||+||+|+.. ++.||||++.... .....+..|+.++.+++|||||++++++.... ..++|
T Consensus 23 ~~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~lv 100 (322)
T 3soc_A 23 SMPLQLLEVKARGRFGCVWKAQLL-NEYVAVKIFPIQD-KQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWLI 100 (322)
T ss_dssp TEEEEEEEEEECSTTCEEEEEEET-TEEEEEEEECGGG-HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEE
T ss_pred hhhchhhheecccCceEEEEEEEC-CCEEEEEEeecCc-hHHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceEEEE
Confidence 356778899999999999999874 7899999996432 22345677999999999999999999998744 46999
Q ss_pred ecccccCcHHHHHHH
Q 004953 699 LKLYIYLFIFQFSIK 713 (722)
Q Consensus 699 ~ey~~~G~L~~~l~~ 713 (722)
|||+++|+|.+++++
T Consensus 101 ~e~~~~g~L~~~l~~ 115 (322)
T 3soc_A 101 TAFHEKGSLSDFLKA 115 (322)
T ss_dssp EECCTTCBHHHHHHH
T ss_pred EecCCCCCHHHHHHh
Confidence 999999999888754
No 231
>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...
Probab=99.10 E-value=2.1e-10 Score=117.86 Aligned_cols=90 Identities=22% Similarity=0.344 Sum_probs=77.8
Q ss_pred cCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCCh------hcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEE
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL------QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQV 696 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~~------~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~ 696 (722)
++|...+.||+|+||.||++... +|+.||||.++.... ...+.|.+|++++.+++||||+++++++...+..+
T Consensus 5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~ 84 (283)
T 3bhy_A 5 DHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDVV 84 (283)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred hhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeEE
Confidence 34777889999999999999975 589999999864321 13567999999999999999999999999999999
Q ss_pred EEecccccCcHHHHHHH
Q 004953 697 LPLKLYIYLFIFQFSIK 713 (722)
Q Consensus 697 Lv~ey~~~G~L~~~l~~ 713 (722)
+||||+++|+|.+++.+
T Consensus 85 lv~e~~~~~~L~~~l~~ 101 (283)
T 3bhy_A 85 LILELVSGGELFDFLAE 101 (283)
T ss_dssp EEEECCCSCBHHHHHHH
T ss_pred EEEeecCCCcHHHHHHh
Confidence 99999999999888754
No 232
>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*
Probab=99.10 E-value=1.9e-10 Score=122.03 Aligned_cols=90 Identities=19% Similarity=0.168 Sum_probs=77.0
Q ss_pred cCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCC---hhcHHHHHHHHHHHHhc-CCCcccceEEEEEeCCeEEEE
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS---LQGEKEFLTEIQFLSRL-HHRNLVSLVGYCDEEGEQVLP 698 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~---~~~~~~f~~E~~~l~~l-~H~Niv~l~g~~~~~~~~~Lv 698 (722)
++|...+.||+|+||+||+++.. +|+.||||+++... ....+.+.+|..++.++ +|||||++++++.+.+..++|
T Consensus 9 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv 88 (345)
T 3a8x_A 9 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFV 88 (345)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEEE
Confidence 45777889999999999999974 58899999996432 22345688999999998 899999999999999999999
Q ss_pred ecccccCcHHHHHHH
Q 004953 699 LKLYIYLFIFQFSIK 713 (722)
Q Consensus 699 ~ey~~~G~L~~~l~~ 713 (722)
|||+++|+|.+++++
T Consensus 89 ~e~~~gg~L~~~l~~ 103 (345)
T 3a8x_A 89 IEYVNGGDLMFHMQR 103 (345)
T ss_dssp ECCCCSCBHHHHHHH
T ss_pred EeCCCCCcHHHHHHH
Confidence 999999999887764
No 233
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}
Probab=99.10 E-value=1.3e-10 Score=120.62 Aligned_cols=84 Identities=29% Similarity=0.364 Sum_probs=67.8
Q ss_pred cCccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCCChh--------------------------cHHHHHHHHHHHHh
Q 004953 624 NNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQ--------------------------GEKEFLTEIQFLSR 676 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~~~~--------------------------~~~~f~~E~~~l~~ 676 (722)
++|...+.||+|+||.||+|.. .+|+.||||++...... ..+.|.+|++++.+
T Consensus 13 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~ 92 (298)
T 2zv2_A 13 NQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILKK 92 (298)
T ss_dssp TTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHHT
T ss_pred cceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHHh
Confidence 4677788999999999999986 46889999998643211 12468999999999
Q ss_pred cCCCcccceEEEEEe--CCeEEEEecccccCcH
Q 004953 677 LHHRNLVSLVGYCDE--EGEQVLPLKLYIYLFI 707 (722)
Q Consensus 677 l~H~Niv~l~g~~~~--~~~~~Lv~ey~~~G~L 707 (722)
++|||||++++++.. .+..++||||+++|+|
T Consensus 93 l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l 125 (298)
T 2zv2_A 93 LDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPV 125 (298)
T ss_dssp CCCTTBCCEEEEEECSSSSEEEEEEECCTTCBS
T ss_pred CCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcH
Confidence 999999999999986 5688999999999887
No 234
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...
Probab=99.09 E-value=1.8e-10 Score=122.97 Aligned_cols=90 Identities=21% Similarity=0.215 Sum_probs=78.9
Q ss_pred cCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCC-hhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEecc
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS-LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPLKL 701 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~-~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~ey 701 (722)
++|...+.||+|+||.||++... +|..||+|++.... ....+.+.+|++++.+++|||||++++++..++..++||||
T Consensus 33 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 112 (360)
T 3eqc_A 33 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEH 112 (360)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred ccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEEEEC
Confidence 45777889999999999999974 68999999997543 33346799999999999999999999999999999999999
Q ss_pred cccCcHHHHHHH
Q 004953 702 YIYLFIFQFSIK 713 (722)
Q Consensus 702 ~~~G~L~~~l~~ 713 (722)
+++|+|.+++.+
T Consensus 113 ~~~~~L~~~l~~ 124 (360)
T 3eqc_A 113 MDGGSLDQVLKK 124 (360)
T ss_dssp CTTCBHHHHHHH
T ss_pred CCCCCHHHHHHH
Confidence 999999888765
No 235
>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*
Probab=99.09 E-value=1.5e-10 Score=121.04 Aligned_cols=87 Identities=28% Similarity=0.401 Sum_probs=73.2
Q ss_pred cCccCCCeeecCCCeeEEEEEeCCCcEEEEEEccCCCh--hcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEecc
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSL--QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPLKL 701 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~~g~~vAVK~l~~~~~--~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~ey 701 (722)
++|...+.||+|+||+||+|...+|+.||||+++.... ...+.+.+|++++.+++|||||++++++.+++..++||||
T Consensus 21 ~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~ 100 (311)
T 3niz_A 21 EKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLVFEF 100 (311)
T ss_dssp CEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEEEEC
T ss_pred hhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEEEcC
Confidence 56777889999999999999988899999999865322 2235789999999999999999999999999999999999
Q ss_pred cccCcHHHHH
Q 004953 702 YIYLFIFQFS 711 (722)
Q Consensus 702 ~~~G~L~~~l 711 (722)
+++ +|.+++
T Consensus 101 ~~~-~l~~~~ 109 (311)
T 3niz_A 101 MEK-DLKKVL 109 (311)
T ss_dssp CSE-EHHHHH
T ss_pred CCC-CHHHHH
Confidence 985 665554
No 236
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*
Probab=99.09 E-value=3.4e-10 Score=118.00 Aligned_cols=90 Identities=26% Similarity=0.359 Sum_probs=76.8
Q ss_pred cCccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCC---ChhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEe
Q 004953 624 NNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEG---SLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPL 699 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~---~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~ 699 (722)
++|...+.||+|+||.||+|.. .+|..||||+++.. .....++|.+|++++.+++||||+++++++..++..++||
T Consensus 32 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 111 (310)
T 2wqm_A 32 ANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVL 111 (310)
T ss_dssp GGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred cceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEEEE
Confidence 4577888999999999999986 56899999998643 2334467999999999999999999999999999999999
Q ss_pred cccccCcHHHHHHH
Q 004953 700 KLYIYLFIFQFSIK 713 (722)
Q Consensus 700 ey~~~G~L~~~l~~ 713 (722)
||+++|+|.+++.+
T Consensus 112 e~~~~~~L~~~l~~ 125 (310)
T 2wqm_A 112 ELADAGDLSRMIKH 125 (310)
T ss_dssp ECCCSCBHHHHHHH
T ss_pred ecCCCCCHHHHHHH
Confidence 99999999888765
No 237
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}
Probab=99.09 E-value=1.3e-10 Score=121.47 Aligned_cols=92 Identities=24% Similarity=0.301 Sum_probs=77.5
Q ss_pred hcCccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCCChhcHHHHHHHHHHHHhcCCCcccceEEEEEe----CCeEEE
Q 004953 623 TNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDE----EGEQVL 697 (722)
Q Consensus 623 t~~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~----~~~~~L 697 (722)
.++|...+.||+|+||.||++.. .+|+.||||++........+.+.+|++++.+++|||||++++++.. ....++
T Consensus 28 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~l 107 (317)
T 2buj_A 28 NKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAWL 107 (317)
T ss_dssp TEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEEEEE
T ss_pred CeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCceeEE
Confidence 35688889999999999999996 5789999999876555556789999999999999999999999973 347899
Q ss_pred EecccccCcHHHHHHHH
Q 004953 698 PLKLYIYLFIFQFSIKL 714 (722)
Q Consensus 698 v~ey~~~G~L~~~l~~~ 714 (722)
|+||+++|+|.+++.+.
T Consensus 108 v~e~~~~~~L~~~l~~~ 124 (317)
T 2buj_A 108 LLPFFKRGTLWNEIERL 124 (317)
T ss_dssp EEECCTTCBHHHHHHHH
T ss_pred EEEeCCCCcHHHHHHHH
Confidence 99999999998887763
No 238
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...
Probab=99.08 E-value=1.5e-10 Score=122.27 Aligned_cols=91 Identities=16% Similarity=0.388 Sum_probs=77.6
Q ss_pred hcCccCCCeeecCCCeeEEEEEeC--------CCcEEEEEEccCCC-hhcHHHHHHHHHHHHhc-CCCcccceEEEEEeC
Q 004953 623 TNNFNSSTQIGQGGYGKVYKGILP--------DGTVVAVKRAQEGS-LQGEKEFLTEIQFLSRL-HHRNLVSLVGYCDEE 692 (722)
Q Consensus 623 t~~f~~~~~iG~G~fG~Vy~g~l~--------~g~~vAVK~l~~~~-~~~~~~f~~E~~~l~~l-~H~Niv~l~g~~~~~ 692 (722)
.++|...+.||+|+||+||+|... ++..||||+++... ....+.+.+|++++.++ +|||||+++++|...
T Consensus 34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~ 113 (334)
T 2pvf_A 34 RDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD 113 (334)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred HhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEccC
Confidence 456778899999999999999862 46789999997543 23446799999999999 999999999999999
Q ss_pred CeEEEEecccccCcHHHHHHH
Q 004953 693 GEQVLPLKLYIYLFIFQFSIK 713 (722)
Q Consensus 693 ~~~~Lv~ey~~~G~L~~~l~~ 713 (722)
+..++||||+++|+|.+++.+
T Consensus 114 ~~~~lv~e~~~~~~L~~~l~~ 134 (334)
T 2pvf_A 114 GPLYVIVEYASKGNLREYLRA 134 (334)
T ss_dssp SCCEEEEECCTTCBHHHHHHT
T ss_pred CceEEEEECCCCCcHHHHHHH
Confidence 999999999999999998764
No 239
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=99.08 E-value=1.6e-10 Score=124.54 Aligned_cols=91 Identities=18% Similarity=0.346 Sum_probs=77.7
Q ss_pred hcCccCCCeeecCCCeeEEEEEeC--------CCcEEEEEEccCCC-hhcHHHHHHHHHHHHhc-CCCcccceEEEEEeC
Q 004953 623 TNNFNSSTQIGQGGYGKVYKGILP--------DGTVVAVKRAQEGS-LQGEKEFLTEIQFLSRL-HHRNLVSLVGYCDEE 692 (722)
Q Consensus 623 t~~f~~~~~iG~G~fG~Vy~g~l~--------~g~~vAVK~l~~~~-~~~~~~f~~E~~~l~~l-~H~Niv~l~g~~~~~ 692 (722)
.++|...+.||+|+||+||+|+.. ++..||||+++... ....+++.+|++++.++ +|||||+++++|..+
T Consensus 68 ~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~ 147 (382)
T 3tt0_A 68 RDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQD 147 (382)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred hhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeeccC
Confidence 346777789999999999999852 24579999997543 33346799999999999 999999999999999
Q ss_pred CeEEEEecccccCcHHHHHHH
Q 004953 693 GEQVLPLKLYIYLFIFQFSIK 713 (722)
Q Consensus 693 ~~~~Lv~ey~~~G~L~~~l~~ 713 (722)
+..++||||+++|+|.+++.+
T Consensus 148 ~~~~lv~e~~~~g~L~~~l~~ 168 (382)
T 3tt0_A 148 GPLYVIVEYASKGNLREYLQA 168 (382)
T ss_dssp SSCEEEEECCTTCBHHHHHHH
T ss_pred CceEEEEEecCCCcHHHHHHH
Confidence 999999999999999998865
No 240
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}
Probab=99.08 E-value=1.6e-10 Score=126.87 Aligned_cols=91 Identities=21% Similarity=0.275 Sum_probs=76.1
Q ss_pred hcCccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCCCh--hcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEe
Q 004953 623 TNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSL--QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPL 699 (722)
Q Consensus 623 t~~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~~~--~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~ 699 (722)
.++|...+.||+|+||.||++.. .+|..||+|.+..... ...+.+.+|++++.+++|||||++++++.+++..++||
T Consensus 10 ~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~lv~ 89 (444)
T 3soa_A 10 TEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYLIF 89 (444)
T ss_dssp HHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEEEE
T ss_pred cCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEEEE
Confidence 34577889999999999999985 4689999999865432 23456999999999999999999999999999999999
Q ss_pred cccccCcHHHHHHH
Q 004953 700 KLYIYLFIFQFSIK 713 (722)
Q Consensus 700 ey~~~G~L~~~l~~ 713 (722)
||+++|+|.+++.+
T Consensus 90 E~~~gg~L~~~i~~ 103 (444)
T 3soa_A 90 DLVTGGELFEDIVA 103 (444)
T ss_dssp CCCBCCBHHHHHHH
T ss_pred EeCCCCCHHHHHHH
Confidence 99999999876543
No 241
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}
Probab=99.08 E-value=1.8e-10 Score=122.63 Aligned_cols=91 Identities=21% Similarity=0.208 Sum_probs=77.3
Q ss_pred hcCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCC---hhcHHHHHHHHHHHHhc-CCCcccceEEEEEeCCeEEE
Q 004953 623 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS---LQGEKEFLTEIQFLSRL-HHRNLVSLVGYCDEEGEQVL 697 (722)
Q Consensus 623 t~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~---~~~~~~f~~E~~~l~~l-~H~Niv~l~g~~~~~~~~~L 697 (722)
.++|...+.||+|+||+||+++.. +|+.||||+++... ....+.+.+|.+++..+ +|||||++++++.+.+..++
T Consensus 22 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~l 101 (353)
T 3txo_A 22 IDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLFF 101 (353)
T ss_dssp -CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred hhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEEE
Confidence 467888899999999999999964 58999999986431 12335688999999998 79999999999999999999
Q ss_pred EecccccCcHHHHHHH
Q 004953 698 PLKLYIYLFIFQFSIK 713 (722)
Q Consensus 698 v~ey~~~G~L~~~l~~ 713 (722)
||||+++|+|.+++++
T Consensus 102 v~E~~~gg~L~~~l~~ 117 (353)
T 3txo_A 102 VMEFVNGGDLMFHIQK 117 (353)
T ss_dssp EEECCCSCBHHHHHHH
T ss_pred EEeCCCCCcHHHHHHH
Confidence 9999999999887754
No 242
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*
Probab=99.08 E-value=1.6e-10 Score=122.50 Aligned_cols=92 Identities=14% Similarity=0.158 Sum_probs=78.2
Q ss_pred hhcCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCC---hhcHHHHHHHHHHHHhc-CCCcccceEEEEEeCCeEE
Q 004953 622 ATNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS---LQGEKEFLTEIQFLSRL-HHRNLVSLVGYCDEEGEQV 696 (722)
Q Consensus 622 ~t~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~---~~~~~~f~~E~~~l~~l-~H~Niv~l~g~~~~~~~~~ 696 (722)
..++|...+.||+|+||+||+|+.. +|+.||||+++... ....+.+..|.+++.++ +|||||++++++.+.+..+
T Consensus 15 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~~~ 94 (345)
T 1xjd_A 15 KIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLF 94 (345)
T ss_dssp -CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEE
T ss_pred ChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCEEE
Confidence 4567888899999999999999974 58899999996431 12345688999999987 9999999999999999999
Q ss_pred EEecccccCcHHHHHHH
Q 004953 697 LPLKLYIYLFIFQFSIK 713 (722)
Q Consensus 697 Lv~ey~~~G~L~~~l~~ 713 (722)
+||||+++|+|.+++++
T Consensus 95 lv~E~~~gg~L~~~l~~ 111 (345)
T 1xjd_A 95 FVMEYLNGGDLMYHIQS 111 (345)
T ss_dssp EEEECCTTCBHHHHHHH
T ss_pred EEEeCCCCCcHHHHHHH
Confidence 99999999999888765
No 243
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=99.08 E-value=2.2e-10 Score=120.51 Aligned_cols=90 Identities=29% Similarity=0.442 Sum_probs=76.9
Q ss_pred cCccCCCeeecCCCeeEEEEEe-----CCCcEEEEEEccCCChhcHHHHHHHHHHHHhcCCCcccceEEEEEeCC--eEE
Q 004953 624 NNFNSSTQIGQGGYGKVYKGIL-----PDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEG--EQV 696 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l-----~~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~--~~~ 696 (722)
++|...+.||+|+||.||++.+ .+|+.||||++........+.|.+|++++.+++|||||++++++...+ ..+
T Consensus 41 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 120 (326)
T 2w1i_A 41 RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLK 120 (326)
T ss_dssp GGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC----CCE
T ss_pred HHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCCceE
Confidence 4567778999999999999984 358899999998765555678999999999999999999999987654 679
Q ss_pred EEecccccCcHHHHHHH
Q 004953 697 LPLKLYIYLFIFQFSIK 713 (722)
Q Consensus 697 Lv~ey~~~G~L~~~l~~ 713 (722)
+||||+++|+|.+++.+
T Consensus 121 lv~e~~~~~~L~~~l~~ 137 (326)
T 2w1i_A 121 LIMEYLPYGSLRDYLQK 137 (326)
T ss_dssp EEECCCTTCBHHHHHHH
T ss_pred EEEECCCCCCHHHHHHh
Confidence 99999999999988765
No 244
>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*
Probab=99.08 E-value=2.2e-10 Score=120.06 Aligned_cols=90 Identities=24% Similarity=0.385 Sum_probs=64.5
Q ss_pred hcCccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCCCh-hcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEec
Q 004953 623 TNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSL-QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPLK 700 (722)
Q Consensus 623 t~~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~~~-~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~e 700 (722)
.++|...+.||+|+||+||+|.. .+|+.||||+++.... ...+.+.+|++++.+++|||||++++++..++..++|||
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 83 (317)
T 2pmi_A 4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLVFE 83 (317)
T ss_dssp ---------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEEEE
T ss_pred ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEEEE
Confidence 35678889999999999999986 4589999999865432 234678999999999999999999999999999999999
Q ss_pred ccccCcHHHHHHH
Q 004953 701 LYIYLFIFQFSIK 713 (722)
Q Consensus 701 y~~~G~L~~~l~~ 713 (722)
|++ |+|.+++.+
T Consensus 84 ~~~-~~L~~~l~~ 95 (317)
T 2pmi_A 84 FMD-NDLKKYMDS 95 (317)
T ss_dssp CCC-CBHHHHHHH
T ss_pred ecC-CCHHHHHHh
Confidence 999 688887754
No 245
>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A
Probab=99.08 E-value=2e-10 Score=120.44 Aligned_cols=89 Identities=21% Similarity=0.297 Sum_probs=77.3
Q ss_pred cCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCChh------cHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEE
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQ------GEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQV 696 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~~~------~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~ 696 (722)
+.|...+.||+|+||.||+|... +|..||||.++..... ..++|.+|+.++.+++||||+++++++.+.+..+
T Consensus 12 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 91 (321)
T 2a2a_A 12 DFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTDVV 91 (321)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred ccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEEE
Confidence 35777889999999999999964 5899999998653221 2567999999999999999999999999999999
Q ss_pred EEecccccCcHHHHHH
Q 004953 697 LPLKLYIYLFIFQFSI 712 (722)
Q Consensus 697 Lv~ey~~~G~L~~~l~ 712 (722)
+||||+++|+|.+++.
T Consensus 92 lv~e~~~~~~L~~~l~ 107 (321)
T 2a2a_A 92 LILELVSGGELFDFLA 107 (321)
T ss_dssp EEECCCCSCBHHHHHH
T ss_pred EEEEcCCCCcHHHHHH
Confidence 9999999999988765
No 246
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}
Probab=99.07 E-value=9.7e-11 Score=122.95 Aligned_cols=94 Identities=21% Similarity=0.325 Sum_probs=71.3
Q ss_pred HhhcCccCCCeeecCCCeeEEEEEeCC-C---cEEEEEEccCC--ChhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCe
Q 004953 621 LATNNFNSSTQIGQGGYGKVYKGILPD-G---TVVAVKRAQEG--SLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGE 694 (722)
Q Consensus 621 ~~t~~f~~~~~iG~G~fG~Vy~g~l~~-g---~~vAVK~l~~~--~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~ 694 (722)
...++|...+.||+|+||+||+|.... + ..||||.++.. .....++|.+|++++.+++|||||++++++...+.
T Consensus 20 i~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 99 (323)
T 3qup_A 20 IPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRA 99 (323)
T ss_dssp CC---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC--
T ss_pred cChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeecccc
Confidence 345678888999999999999998643 3 27999999654 23345679999999999999999999999987665
Q ss_pred E------EEEecccccCcHHHHHHHH
Q 004953 695 Q------VLPLKLYIYLFIFQFSIKL 714 (722)
Q Consensus 695 ~------~Lv~ey~~~G~L~~~l~~~ 714 (722)
. ++||||+++|+|.+++.+.
T Consensus 100 ~~~~~~~~~v~e~~~~~~L~~~l~~~ 125 (323)
T 3qup_A 100 KGRLPIPMVILPFMKHGDLHAFLLAS 125 (323)
T ss_dssp -----CEEEEEECCTTCBHHHHHHHH
T ss_pred ccCCCccEEEEEeccCCcHHHHHHhh
Confidence 5 9999999999998887543
No 247
>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A
Probab=99.07 E-value=4.8e-10 Score=117.90 Aligned_cols=82 Identities=22% Similarity=0.216 Sum_probs=72.5
Q ss_pred CCeeecCCCeeEEEEEeC-CCcEEEEEEccCCChhcHHHHHHHHHHHHhcC-CCcccceEEEEEeCCeEEEEecccccCc
Q 004953 629 STQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLH-HRNLVSLVGYCDEEGEQVLPLKLYIYLF 706 (722)
Q Consensus 629 ~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~-H~Niv~l~g~~~~~~~~~Lv~ey~~~G~ 706 (722)
.+.||+|+||.||+|... +|+.||||++.. .....+.+|+.++.+++ |||||++++++.+++..++||||+++|+
T Consensus 16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~---~~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~~~~ 92 (325)
T 3kn6_A 16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISK---RMEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNGGE 92 (325)
T ss_dssp SCCSEEETTEEEEEEEETTTCCEEEEEEEEG---GGHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCSCB
T ss_pred CCccccCCCeEEEEEEECCCCCEEEEEEECh---hhhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEccCCCc
Confidence 478999999999999974 589999999863 23457889999999997 9999999999999999999999999999
Q ss_pred HHHHHHH
Q 004953 707 IFQFSIK 713 (722)
Q Consensus 707 L~~~l~~ 713 (722)
|.+++.+
T Consensus 93 L~~~l~~ 99 (325)
T 3kn6_A 93 LFERIKK 99 (325)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9887654
No 248
>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*
Probab=99.07 E-value=4.2e-10 Score=115.58 Aligned_cols=91 Identities=21% Similarity=0.291 Sum_probs=77.7
Q ss_pred hcCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCC--ChhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEe
Q 004953 623 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEG--SLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPL 699 (722)
Q Consensus 623 t~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~--~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~ 699 (722)
.++|...+.||+|+||.||+|... +|..||||++... .....+.+.+|++++.+++||||+++++++..++..++||
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~ 84 (284)
T 3kk8_A 5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF 84 (284)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEEE
Confidence 356778889999999999999864 5889999998643 2233467899999999999999999999999999999999
Q ss_pred cccccCcHHHHHHH
Q 004953 700 KLYIYLFIFQFSIK 713 (722)
Q Consensus 700 ey~~~G~L~~~l~~ 713 (722)
||+++|+|.+++.+
T Consensus 85 e~~~~~~l~~~~~~ 98 (284)
T 3kk8_A 85 DLVTGGELFEDIVA 98 (284)
T ss_dssp CCCCSCBHHHHHHH
T ss_pred ecCCCCCHHHHHHh
Confidence 99999999776543
No 249
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0
Probab=99.07 E-value=1.9e-10 Score=117.31 Aligned_cols=87 Identities=28% Similarity=0.382 Sum_probs=71.4
Q ss_pred cCccCCCeeecCCCeeEEEEEeCCCcEEEEEEccCCCh----hcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEe
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSL----QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPL 699 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~~g~~vAVK~l~~~~~----~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~ 699 (722)
++|+..+.||+|+||.||+|.. .|..||||+++.... ...+.|.+|++++.+++||||+++++++..++..++||
T Consensus 7 ~~~~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 85 (271)
T 3dtc_A 7 AELTLEEIIGIGGFGKVYRAFW-IGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLVM 85 (271)
T ss_dssp TSEEEEEEEEEETTEEEEEEEE-TTEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEEEE
T ss_pred hheeeeeeeccCCCeEEEEEEE-cCCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEEE
Confidence 4677788999999999999997 488999999865322 22467999999999999999999999999999999999
Q ss_pred cccccCcHHHHH
Q 004953 700 KLYIYLFIFQFS 711 (722)
Q Consensus 700 ey~~~G~L~~~l 711 (722)
||+++|+|.+++
T Consensus 86 e~~~~~~L~~~~ 97 (271)
T 3dtc_A 86 EFARGGPLNRVL 97 (271)
T ss_dssp ECCTTEEHHHHH
T ss_pred EcCCCCCHHHHh
Confidence 999999997764
No 250
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Probab=99.07 E-value=1.9e-10 Score=121.05 Aligned_cols=92 Identities=28% Similarity=0.403 Sum_probs=76.4
Q ss_pred hcCccCCCeeecCCCeeEEEEEe------CCCcEEEEEEccCC-ChhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeE
Q 004953 623 TNNFNSSTQIGQGGYGKVYKGIL------PDGTVVAVKRAQEG-SLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQ 695 (722)
Q Consensus 623 t~~f~~~~~iG~G~fG~Vy~g~l------~~g~~vAVK~l~~~-~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~ 695 (722)
.++|...+.||+|+||.||+|.. .++..||||.+... ......+|.+|+.++.+++|||||++++++...+..
T Consensus 29 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 108 (327)
T 2yfx_A 29 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR 108 (327)
T ss_dssp GGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred hhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCCCc
Confidence 35677889999999999999984 24678999999654 334456799999999999999999999999999999
Q ss_pred EEEecccccCcHHHHHHHH
Q 004953 696 VLPLKLYIYLFIFQFSIKL 714 (722)
Q Consensus 696 ~Lv~ey~~~G~L~~~l~~~ 714 (722)
++||||+++|+|.+++.+.
T Consensus 109 ~lv~e~~~~~~L~~~l~~~ 127 (327)
T 2yfx_A 109 FILMELMAGGDLKSFLRET 127 (327)
T ss_dssp EEEEECCTTEEHHHHHHHT
T ss_pred EEEEecCCCCcHHHHHHhh
Confidence 9999999999999988753
No 251
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...
Probab=99.07 E-value=1.1e-10 Score=119.71 Aligned_cols=89 Identities=24% Similarity=0.375 Sum_probs=76.5
Q ss_pred hhcCccCCCeeecCCCeeEEEEEeCCCcEEEEEEccCCChhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEecc
Q 004953 622 ATNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPLKL 701 (722)
Q Consensus 622 ~t~~f~~~~~iG~G~fG~Vy~g~l~~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~ey 701 (722)
..++|...+.||+|+||.||+|...++..||||.++... ...+.|.+|++++.+++||||+++++++. .+..++||||
T Consensus 11 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~e~ 88 (279)
T 1qpc_A 11 PRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGS-MSPDAFLAEANLMKQLQHQRLVRLYAVVT-QEPIYIITEY 88 (279)
T ss_dssp CGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEEEEC
T ss_pred CHHhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCc-ccHHHHHHHHHHHHhCCCcCcceEEEEEc-CCCcEEEEec
Confidence 345677788999999999999998888899999997543 24567999999999999999999999986 4568999999
Q ss_pred cccCcHHHHHH
Q 004953 702 YIYLFIFQFSI 712 (722)
Q Consensus 702 ~~~G~L~~~l~ 712 (722)
+++|+|.+++.
T Consensus 89 ~~~~~L~~~l~ 99 (279)
T 1qpc_A 89 MENGSLVDFLK 99 (279)
T ss_dssp CTTCBHHHHTT
T ss_pred CCCCCHHHHHh
Confidence 99999988764
No 252
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=99.07 E-value=9.5e-11 Score=124.20 Aligned_cols=94 Identities=23% Similarity=0.428 Sum_probs=78.3
Q ss_pred HHhhcCccCCCeeecCCCeeEEEEEe------CCCcEEEEEEccCCC-hhcHHHHHHHHHHHHhc-CCCcccceEEEEEe
Q 004953 620 ALATNNFNSSTQIGQGGYGKVYKGIL------PDGTVVAVKRAQEGS-LQGEKEFLTEIQFLSRL-HHRNLVSLVGYCDE 691 (722)
Q Consensus 620 ~~~t~~f~~~~~iG~G~fG~Vy~g~l------~~g~~vAVK~l~~~~-~~~~~~f~~E~~~l~~l-~H~Niv~l~g~~~~ 691 (722)
+...++|...+.||+|+||.||+|.. .++..||||.++... ....+.|.+|++++.++ +|||||++++++..
T Consensus 41 ~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~ 120 (344)
T 1rjb_A 41 EFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTL 120 (344)
T ss_dssp BCCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred ccCHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEee
Confidence 34456788889999999999999985 235689999997542 23346799999999999 99999999999999
Q ss_pred CCeEEEEecccccCcHHHHHHH
Q 004953 692 EGEQVLPLKLYIYLFIFQFSIK 713 (722)
Q Consensus 692 ~~~~~Lv~ey~~~G~L~~~l~~ 713 (722)
.+..++||||+++|+|.+++.+
T Consensus 121 ~~~~~lv~e~~~~g~L~~~l~~ 142 (344)
T 1rjb_A 121 SGPIYLIFEYCCYGDLLNYLRS 142 (344)
T ss_dssp SSSCEEEEECCTTCBHHHHHHT
T ss_pred CCccEEEEecCCCCcHHHHHhh
Confidence 9999999999999999998864
No 253
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}
Probab=99.07 E-value=1.5e-10 Score=124.32 Aligned_cols=90 Identities=20% Similarity=0.234 Sum_probs=76.8
Q ss_pred cCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCC---hhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEe
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS---LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPL 699 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~---~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~ 699 (722)
++|...+.||+|+||.||++... +++.||||.+.... ....+.+.+|+++|.+++|||||++++++.+.+..++||
T Consensus 15 ~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv~ 94 (384)
T 4fr4_A 15 DHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMVV 94 (384)
T ss_dssp GGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEE
Confidence 45777889999999999999864 58899999985421 123467899999999999999999999999999999999
Q ss_pred cccccCcHHHHHHH
Q 004953 700 KLYIYLFIFQFSIK 713 (722)
Q Consensus 700 ey~~~G~L~~~l~~ 713 (722)
||+++|+|.+++.+
T Consensus 95 e~~~gg~L~~~l~~ 108 (384)
T 4fr4_A 95 DLLLGGDLRYHLQQ 108 (384)
T ss_dssp CCCTTEEHHHHHHT
T ss_pred ecCCCCcHHHHHHh
Confidence 99999999877653
No 254
>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A
Probab=99.07 E-value=2.5e-10 Score=118.00 Aligned_cols=86 Identities=24% Similarity=0.366 Sum_probs=72.3
Q ss_pred cCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCCh--hcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEec
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL--QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPLK 700 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~~--~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~e 700 (722)
++|...+.||+|+||+||+|... +|+.||||+++.... ...+.+.+|++++.+++|||||++++++.+++..++|||
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 81 (292)
T 3o0g_A 2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE 81 (292)
T ss_dssp CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEEe
Confidence 35777789999999999999964 589999999965332 234678999999999999999999999999999999999
Q ss_pred ccccCcHHHH
Q 004953 701 LYIYLFIFQF 710 (722)
Q Consensus 701 y~~~G~L~~~ 710 (722)
|+++ ++.++
T Consensus 82 ~~~~-~l~~~ 90 (292)
T 3o0g_A 82 FCDQ-DLKKY 90 (292)
T ss_dssp CCSE-EHHHH
T ss_pred cCCC-CHHHH
Confidence 9986 44333
No 255
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*
Probab=99.06 E-value=3e-10 Score=117.81 Aligned_cols=89 Identities=26% Similarity=0.327 Sum_probs=73.6
Q ss_pred CccCCCeeecCCCeeEEEEEe-----CCCcEEEEEEccCCC-hhcHHHHHHHHHHHHhcCCCcccceEEEEEeC--CeEE
Q 004953 625 NFNSSTQIGQGGYGKVYKGIL-----PDGTVVAVKRAQEGS-LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEE--GEQV 696 (722)
Q Consensus 625 ~f~~~~~iG~G~fG~Vy~g~l-----~~g~~vAVK~l~~~~-~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~--~~~~ 696 (722)
.|+..+.||+|+||.||+|.+ .+++.||||+++... ....+.+.+|++++.+++||||+++++++... +..+
T Consensus 22 ~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~ 101 (302)
T 4e5w_A 22 FLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIK 101 (302)
T ss_dssp GEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---CCEE
T ss_pred hhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCceEE
Confidence 466778999999999999984 358899999997543 23346799999999999999999999999876 6689
Q ss_pred EEecccccCcHHHHHHH
Q 004953 697 LPLKLYIYLFIFQFSIK 713 (722)
Q Consensus 697 Lv~ey~~~G~L~~~l~~ 713 (722)
+||||+++|+|.+++.+
T Consensus 102 lv~e~~~~~~L~~~l~~ 118 (302)
T 4e5w_A 102 LIMEFLPSGSLKEYLPK 118 (302)
T ss_dssp EEEECCTTCBHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHh
Confidence 99999999999988754
No 256
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Probab=99.06 E-value=2.1e-10 Score=121.99 Aligned_cols=90 Identities=18% Similarity=0.219 Sum_probs=77.8
Q ss_pred cCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCC---hhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEe
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS---LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPL 699 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~---~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~ 699 (722)
++|...+.||+|+||.||++... +|+.||||+++... ....+.+.+|++++.+++|||||++++++.+.+..++||
T Consensus 41 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 120 (350)
T 1rdq_E 41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVM 120 (350)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEEE
Confidence 45777889999999999999964 68999999985421 123457899999999999999999999999999999999
Q ss_pred cccccCcHHHHHHH
Q 004953 700 KLYIYLFIFQFSIK 713 (722)
Q Consensus 700 ey~~~G~L~~~l~~ 713 (722)
||+++|+|.+++++
T Consensus 121 e~~~gg~L~~~l~~ 134 (350)
T 1rdq_E 121 EYVAGGEMFSHLRR 134 (350)
T ss_dssp ECCTTCBHHHHHHH
T ss_pred cCCCCCcHHHHHHH
Confidence 99999999888765
No 257
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=99.06 E-value=2e-10 Score=123.94 Aligned_cols=90 Identities=18% Similarity=0.187 Sum_probs=75.8
Q ss_pred cCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCCh---hcHHHHHHHHHHHHhc-CCCcccceEEEEEeCCeEEEE
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL---QGEKEFLTEIQFLSRL-HHRNLVSLVGYCDEEGEQVLP 698 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~~---~~~~~f~~E~~~l~~l-~H~Niv~l~g~~~~~~~~~Lv 698 (722)
++|...+.||+|+||+||+++.. +++.||||+++.... ...+.+.+|..++.++ +|||||++++++.+++..++|
T Consensus 52 ~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~lV 131 (396)
T 4dc2_A 52 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFV 131 (396)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEE
T ss_pred hHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEEEE
Confidence 46788899999999999999975 578999999864321 2224588999999887 899999999999999999999
Q ss_pred ecccccCcHHHHHHH
Q 004953 699 LKLYIYLFIFQFSIK 713 (722)
Q Consensus 699 ~ey~~~G~L~~~l~~ 713 (722)
|||+++|+|.+++++
T Consensus 132 ~E~~~gg~L~~~l~~ 146 (396)
T 4dc2_A 132 IEYVNGGDLMFHMQR 146 (396)
T ss_dssp EECCTTCBHHHHHHH
T ss_pred EEcCCCCcHHHHHHH
Confidence 999999999887654
No 258
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=99.06 E-value=1.7e-10 Score=120.53 Aligned_cols=89 Identities=26% Similarity=0.313 Sum_probs=72.9
Q ss_pred cCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCC--hhcHHHHHHHHHHHHhc-CCCcccceEEEEEeCCeEEEEe
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS--LQGEKEFLTEIQFLSRL-HHRNLVSLVGYCDEEGEQVLPL 699 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~--~~~~~~f~~E~~~l~~l-~H~Niv~l~g~~~~~~~~~Lv~ 699 (722)
++|+..+.||+|+||+||+|... +|+.||||++.... .....++..|+..+.++ +|||||+++++|.+++..++||
T Consensus 57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv~ 136 (311)
T 3p1a_A 57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQT 136 (311)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEEEE
Confidence 46888889999999999999975 68999999986532 23334567777777666 9999999999999999999999
Q ss_pred cccccCcHHHHHHH
Q 004953 700 KLYIYLFIFQFSIK 713 (722)
Q Consensus 700 ey~~~G~L~~~l~~ 713 (722)
||+ +|+|.+++.+
T Consensus 137 e~~-~~~L~~~~~~ 149 (311)
T 3p1a_A 137 ELC-GPSLQQHCEA 149 (311)
T ss_dssp ECC-CCBHHHHHHH
T ss_pred ecc-CCCHHHHHHh
Confidence 999 6788776544
No 259
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3hmm_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=99.06 E-value=2.7e-10 Score=118.18 Aligned_cols=86 Identities=21% Similarity=0.367 Sum_probs=72.5
Q ss_pred cCccCCCeeecCCCeeEEEEEeCCCcEEEEEEccCCChhcHHHHHHHHHHHHh--cCCCcccceEEEEEeCC----eEEE
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSR--LHHRNLVSLVGYCDEEG----EQVL 697 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~--l~H~Niv~l~g~~~~~~----~~~L 697 (722)
++|...+.||+|+||.||+|+. +|+.||||+++.. ..+++.+|.+++.. ++|||||++++++...+ ..++
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~l 78 (303)
T 3gxj_A 3 RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWL 78 (303)
T ss_dssp GGCCCCEEEEECSSSEEEEC-C-TTSCEEEEECC-T---THHHHHHHHHHHTSTTCCC-CBCCEEEEEEEECSSSEEEEE
T ss_pred ceeeehhhccCCCCeEEEEEEE-cCcceEEEEeccc---chhhHHHHHHHHHHHhccCcceeeeeeecccCCCccceeEE
Confidence 4577889999999999999987 4899999998643 34568889999887 79999999999998866 7899
Q ss_pred EecccccCcHHHHHHH
Q 004953 698 PLKLYIYLFIFQFSIK 713 (722)
Q Consensus 698 v~ey~~~G~L~~~l~~ 713 (722)
||||+++|+|.+++.+
T Consensus 79 v~e~~~~g~L~~~l~~ 94 (303)
T 3gxj_A 79 VSDYHEHGSLFDYLNR 94 (303)
T ss_dssp EEECCTTCCHHHHHHH
T ss_pred EEeccCCCCHHHHHhc
Confidence 9999999999999865
No 260
>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*
Probab=99.06 E-value=3.2e-10 Score=116.01 Aligned_cols=90 Identities=22% Similarity=0.271 Sum_probs=77.7
Q ss_pred cCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCC---hhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEe
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS---LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPL 699 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~---~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~ 699 (722)
++|...+.||+|+||.||+|... +|+.||||.+.... ....+.+.+|++++.+++||||+++++++..++..++||
T Consensus 11 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 90 (276)
T 2h6d_A 11 GHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMVM 90 (276)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred ccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEEEE
Confidence 45777889999999999999975 68999999986432 123457899999999999999999999999999999999
Q ss_pred cccccCcHHHHHHH
Q 004953 700 KLYIYLFIFQFSIK 713 (722)
Q Consensus 700 ey~~~G~L~~~l~~ 713 (722)
||+++|+|.+++.+
T Consensus 91 e~~~~~~L~~~l~~ 104 (276)
T 2h6d_A 91 EYVSGGELFDYICK 104 (276)
T ss_dssp ECCCSCBHHHHHHH
T ss_pred eccCCCcHHHHHhc
Confidence 99999999888754
No 261
>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
Probab=99.05 E-value=4.5e-10 Score=116.25 Aligned_cols=91 Identities=19% Similarity=0.206 Sum_probs=77.7
Q ss_pred hcCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCCh---------hcHHHHHHHHHHHHhcC-CCcccceEEEEEe
Q 004953 623 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL---------QGEKEFLTEIQFLSRLH-HRNLVSLVGYCDE 691 (722)
Q Consensus 623 t~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~~---------~~~~~f~~E~~~l~~l~-H~Niv~l~g~~~~ 691 (722)
.++|...+.||+|+||.||+|... +|+.||||.++.... ...+.+.+|++++.+++ ||||+++++++..
T Consensus 16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~ 95 (298)
T 1phk_A 16 YENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYET 95 (298)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEC
T ss_pred hhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeecc
Confidence 356888899999999999999974 588999999865321 12346889999999996 9999999999999
Q ss_pred CCeEEEEecccccCcHHHHHHH
Q 004953 692 EGEQVLPLKLYIYLFIFQFSIK 713 (722)
Q Consensus 692 ~~~~~Lv~ey~~~G~L~~~l~~ 713 (722)
.+..++||||+++|+|.+++.+
T Consensus 96 ~~~~~lv~e~~~~~~L~~~l~~ 117 (298)
T 1phk_A 96 NTFFFLVFDLMKKGELFDYLTE 117 (298)
T ss_dssp SSEEEEEEECCTTCBHHHHHHH
T ss_pred CCeEEEEEeccCCCcHHHHHhc
Confidence 9999999999999999888765
No 262
>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*
Probab=99.05 E-value=3.7e-10 Score=116.79 Aligned_cols=90 Identities=17% Similarity=0.290 Sum_probs=77.1
Q ss_pred cCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCC---ChhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEe
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEG---SLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPL 699 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~---~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~ 699 (722)
++|...+.||+|+||+||++... +++.||+|.+... .....+.+.+|+.++.+++|||||++++++...+..++||
T Consensus 15 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 94 (294)
T 2rku_A 15 RRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVVL 94 (294)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEEEE
Confidence 45777889999999999999975 4789999998543 2233467999999999999999999999999999999999
Q ss_pred cccccCcHHHHHHH
Q 004953 700 KLYIYLFIFQFSIK 713 (722)
Q Consensus 700 ey~~~G~L~~~l~~ 713 (722)
||+++|+|.+++.+
T Consensus 95 e~~~~~~L~~~~~~ 108 (294)
T 2rku_A 95 ELCRRRSLLELHKR 108 (294)
T ss_dssp ECCTTCBHHHHHHH
T ss_pred ecCCCCCHHHHHHh
Confidence 99999999887654
No 263
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=99.05 E-value=3.5e-10 Score=126.53 Aligned_cols=91 Identities=21% Similarity=0.306 Sum_probs=75.2
Q ss_pred hcCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCCh-------------hcHHHHHHHHHHHHhcCCCcccceEEE
Q 004953 623 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL-------------QGEKEFLTEIQFLSRLHHRNLVSLVGY 688 (722)
Q Consensus 623 t~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~~-------------~~~~~f~~E~~~l~~l~H~Niv~l~g~ 688 (722)
.+.|...+.||+|+||+||+|... ++..||||++..... ...+++.+|++++.+++|||||+++++
T Consensus 35 ~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~ 114 (504)
T 3q5i_A 35 GESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFDV 114 (504)
T ss_dssp GGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred ccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEEE
Confidence 456888899999999999999964 578999999864321 224579999999999999999999999
Q ss_pred EEeCCeEEEEecccccCcHHHHHHH
Q 004953 689 CDEEGEQVLPLKLYIYLFIFQFSIK 713 (722)
Q Consensus 689 ~~~~~~~~Lv~ey~~~G~L~~~l~~ 713 (722)
|.+.+..++||||+++|+|.+++.+
T Consensus 115 ~~~~~~~~lv~e~~~gg~L~~~l~~ 139 (504)
T 3q5i_A 115 FEDKKYFYLVTEFYEGGELFEQIIN 139 (504)
T ss_dssp EECSSEEEEEEECCTTCBHHHHHHH
T ss_pred EEcCCEEEEEEecCCCCcHHHHHHH
Confidence 9999999999999999999877643
No 264
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=99.05 E-value=3e-10 Score=119.89 Aligned_cols=89 Identities=24% Similarity=0.373 Sum_probs=75.3
Q ss_pred CccCCCeeecCCCeeEEEEEeCC-----CcEEEEEEccCCC-hhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEE
Q 004953 625 NFNSSTQIGQGGYGKVYKGILPD-----GTVVAVKRAQEGS-LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLP 698 (722)
Q Consensus 625 ~f~~~~~iG~G~fG~Vy~g~l~~-----g~~vAVK~l~~~~-~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv 698 (722)
.|...+.||+|+||+||+|.... +..||||.++... .....+|.+|++++.+++|||||+++|++...+..++|
T Consensus 45 ~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv 124 (333)
T 1mqb_A 45 CVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMII 124 (333)
T ss_dssp TEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEE
T ss_pred HhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCCcEEE
Confidence 45556899999999999998642 2469999997543 23345799999999999999999999999999999999
Q ss_pred ecccccCcHHHHHHH
Q 004953 699 LKLYIYLFIFQFSIK 713 (722)
Q Consensus 699 ~ey~~~G~L~~~l~~ 713 (722)
|||+++|+|.+++++
T Consensus 125 ~e~~~~~~L~~~l~~ 139 (333)
T 1mqb_A 125 TEYMENGALDKFLRE 139 (333)
T ss_dssp EECCTTEEHHHHHHH
T ss_pred EeCCCCCcHHHHHHh
Confidence 999999999988765
No 265
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=99.05 E-value=2.6e-10 Score=121.12 Aligned_cols=87 Identities=23% Similarity=0.344 Sum_probs=73.7
Q ss_pred CccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCCCh---hcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEec
Q 004953 625 NFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSL---QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPLK 700 (722)
Q Consensus 625 ~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~~~---~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~e 700 (722)
.|...+.||+|+||+||+|.. .+|+.||||++..... ...++|.+|++++.+++|||||+++|++..++..++|||
T Consensus 55 ~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e 134 (348)
T 1u5q_A 55 LFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVME 134 (348)
T ss_dssp HEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred heeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEEEe
Confidence 366778999999999999985 5789999999865432 223579999999999999999999999999999999999
Q ss_pred ccccCcHHHHHH
Q 004953 701 LYIYLFIFQFSI 712 (722)
Q Consensus 701 y~~~G~L~~~l~ 712 (722)
|++ |++.+++.
T Consensus 135 ~~~-g~l~~~l~ 145 (348)
T 1u5q_A 135 YCL-GSASDLLE 145 (348)
T ss_dssp CCS-EEHHHHHH
T ss_pred cCC-CCHHHHHH
Confidence 998 67766654
No 266
>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...
Probab=99.05 E-value=2.4e-10 Score=117.17 Aligned_cols=91 Identities=23% Similarity=0.354 Sum_probs=77.2
Q ss_pred hcCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCCh---hcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEE
Q 004953 623 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL---QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLP 698 (722)
Q Consensus 623 t~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~~---~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv 698 (722)
.++|...+.||+|+||+||+|... ++..||||++..... ...+.+.+|++++.+++||||+++++++.+.+..++|
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 87 (279)
T 3fdn_A 8 LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLI 87 (279)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEEE
Confidence 356777889999999999999864 577999999854221 2245789999999999999999999999999999999
Q ss_pred ecccccCcHHHHHHH
Q 004953 699 LKLYIYLFIFQFSIK 713 (722)
Q Consensus 699 ~ey~~~G~L~~~l~~ 713 (722)
|||+++|+|.+++.+
T Consensus 88 ~e~~~~~~l~~~l~~ 102 (279)
T 3fdn_A 88 LEYAPLGTVYRELQK 102 (279)
T ss_dssp ECCCTTEEHHHHHHH
T ss_pred EecCCCCcHHHHHHh
Confidence 999999999887654
No 267
>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A
Probab=99.05 E-value=2.9e-10 Score=117.31 Aligned_cols=88 Identities=24% Similarity=0.303 Sum_probs=75.0
Q ss_pred cCccCCCeeecCCCeeEEEEEeCCCcEEEEEEccCCChh--cHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEecc
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQ--GEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPLKL 701 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~~g~~vAVK~l~~~~~~--~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~ey 701 (722)
++|...+.||+|+||+||+|...+|+.||||++...... ..+.+.+|++++.+++|||||++++++...+..++||||
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 81 (288)
T 1ob3_A 2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH 81 (288)
T ss_dssp CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred ccchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEEe
Confidence 356777899999999999999877999999998654322 236789999999999999999999999999999999999
Q ss_pred cccCcHHHHHH
Q 004953 702 YIYLFIFQFSI 712 (722)
Q Consensus 702 ~~~G~L~~~l~ 712 (722)
+++ +|.+++.
T Consensus 82 ~~~-~l~~~~~ 91 (288)
T 1ob3_A 82 LDQ-DLKKLLD 91 (288)
T ss_dssp CSE-EHHHHHH
T ss_pred cCC-CHHHHHH
Confidence 985 7766554
No 268
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}
Probab=99.05 E-value=4e-10 Score=117.51 Aligned_cols=90 Identities=18% Similarity=0.270 Sum_probs=78.6
Q ss_pred cCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCChh---cHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEe
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQ---GEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPL 699 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~~~---~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~ 699 (722)
++|...+.||+|+||.||+|... +++.||||.+...... ..+.|.+|+.++.+++||||+++++++..++..++|+
T Consensus 34 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 113 (309)
T 2h34_A 34 GPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYVDM 113 (309)
T ss_dssp CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred ccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEEEE
Confidence 56888899999999999999964 6889999998654222 2367999999999999999999999999999999999
Q ss_pred cccccCcHHHHHHH
Q 004953 700 KLYIYLFIFQFSIK 713 (722)
Q Consensus 700 ey~~~G~L~~~l~~ 713 (722)
||+++|+|.+++.+
T Consensus 114 e~~~~~~L~~~l~~ 127 (309)
T 2h34_A 114 RLINGVDLAAMLRR 127 (309)
T ss_dssp ECCCCEEHHHHHHH
T ss_pred EecCCCCHHHHHHh
Confidence 99999999888764
No 269
>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*
Probab=99.05 E-value=4.1e-10 Score=115.39 Aligned_cols=91 Identities=20% Similarity=0.248 Sum_probs=77.5
Q ss_pred cCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCC--hhcHHHHHHHHHHHHhcCCCcccceEEEEEe--CCeEEEE
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS--LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDE--EGEQVLP 698 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~--~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~--~~~~~Lv 698 (722)
++|...+.||+|+||.||++... +|+.||+|.+.... ....+.|.+|++++.+++|||||++++++.. .+..++|
T Consensus 6 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv 85 (279)
T 2w5a_A 6 EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIV 85 (279)
T ss_dssp GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEEE
T ss_pred hheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEEE
Confidence 46777889999999999999964 68999999996542 3334679999999999999999999998864 5689999
Q ss_pred ecccccCcHHHHHHHH
Q 004953 699 LKLYIYLFIFQFSIKL 714 (722)
Q Consensus 699 ~ey~~~G~L~~~l~~~ 714 (722)
|||+++|+|.+++.+.
T Consensus 86 ~e~~~~~~L~~~l~~~ 101 (279)
T 2w5a_A 86 MEYCEGGDLASVITKG 101 (279)
T ss_dssp EECCTTEEHHHHHHHH
T ss_pred EeCCCCCCHHHHHHhh
Confidence 9999999999988653
No 270
>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}
Probab=99.05 E-value=4.9e-10 Score=116.77 Aligned_cols=89 Identities=27% Similarity=0.377 Sum_probs=76.3
Q ss_pred cCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCCh--hcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEec
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL--QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPLK 700 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~~--~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~e 700 (722)
++|...+.||+|+||+||+|... +|+.||||++..... ...+.+.+|++++.+++|||||++++++...+..++|||
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 82 (311)
T 4agu_A 3 EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVFE 82 (311)
T ss_dssp CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred ccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEEEE
Confidence 46777889999999999999974 589999999865432 224568999999999999999999999999999999999
Q ss_pred ccccCcHHHHHH
Q 004953 701 LYIYLFIFQFSI 712 (722)
Q Consensus 701 y~~~G~L~~~l~ 712 (722)
|+++|+|.++++
T Consensus 83 ~~~~~~l~~~~~ 94 (311)
T 4agu_A 83 YCDHTVLHELDR 94 (311)
T ss_dssp CCSEEHHHHHHH
T ss_pred eCCCchHHHHHh
Confidence 999999876643
No 271
>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}
Probab=99.04 E-value=1.9e-10 Score=119.95 Aligned_cols=84 Identities=25% Similarity=0.396 Sum_probs=72.4
Q ss_pred cCccCCCeeecCCCeeEEEEEeCCCcEEEEEEccCCChhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEecccc
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPLKLYI 703 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~ey~~ 703 (722)
++|+..+.||+|+||+||+|.. .++.||||++... ...+.|.+|++++.+++|||||+++|++. +..++||||++
T Consensus 8 ~~~~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~--~~~~~~~~E~~~l~~l~hp~iv~~~~~~~--~~~~lv~e~~~ 82 (307)
T 2eva_A 8 KEIEVEEVVGRGAFGVVCKAKW-RAKDVAIKQIESE--SERKAFIVELRQLSRVNHPNIVKLYGACL--NPVCLVMEYAE 82 (307)
T ss_dssp GGEEEEEEEECCSSSEEEEEEE-TTEEEEEEECSST--THHHHHHHHHHHHHHCCCTTBCCEEEBCT--TTTEEEEECCT
T ss_pred hHeeeeeEeecCCCceEEEEEE-CCeeEEEEEecCh--hHHHHHHHHHHHHhcCCCCCcCeEEEEEc--CCcEEEEEcCC
Confidence 3466678999999999999998 4788999999643 34567999999999999999999999886 45789999999
Q ss_pred cCcHHHHHH
Q 004953 704 YLFIFQFSI 712 (722)
Q Consensus 704 ~G~L~~~l~ 712 (722)
+|+|.+++.
T Consensus 83 ~~~L~~~l~ 91 (307)
T 2eva_A 83 GGSLYNVLH 91 (307)
T ss_dssp TCBHHHHHH
T ss_pred CCCHHHHHh
Confidence 999988875
No 272
>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}
Probab=99.04 E-value=2.2e-10 Score=117.44 Aligned_cols=90 Identities=18% Similarity=0.328 Sum_probs=77.2
Q ss_pred cCccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCCCh---hcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEe
Q 004953 624 NNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSL---QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPL 699 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~~~---~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~ 699 (722)
++|...+.||+|+||.||+|+. .+|+.||||.+..... ...+.+.+|++++.+++||||+++++++...+..++||
T Consensus 11 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 90 (278)
T 3cok_A 11 EDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYLVL 90 (278)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEEEE
T ss_pred ccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEEEE
Confidence 4577788999999999999986 5789999999854321 12357999999999999999999999999999999999
Q ss_pred cccccCcHHHHHHH
Q 004953 700 KLYIYLFIFQFSIK 713 (722)
Q Consensus 700 ey~~~G~L~~~l~~ 713 (722)
||+++|+|.+++.+
T Consensus 91 e~~~~~~L~~~l~~ 104 (278)
T 3cok_A 91 EMCHNGEMNRYLKN 104 (278)
T ss_dssp ECCTTEEHHHHHHT
T ss_pred ecCCCCcHHHHHhh
Confidence 99999999887654
No 273
>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*
Probab=99.04 E-value=1.2e-10 Score=121.55 Aligned_cols=90 Identities=18% Similarity=0.127 Sum_probs=75.3
Q ss_pred cCccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCCChh---cHHHHHHHHHHHHhcCCCcccceEEEEEeCC----eE
Q 004953 624 NNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQ---GEKEFLTEIQFLSRLHHRNLVSLVGYCDEEG----EQ 695 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~~~~---~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~----~~ 695 (722)
++|...+.||+|+||+||++.. .+++.||||+++..... ..+.|.+|++++.+++|||||++++++...+ ..
T Consensus 12 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~ 91 (311)
T 3ork_A 12 DRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLP 91 (311)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEEE
T ss_pred CcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCccc
Confidence 4677789999999999999995 56899999999754322 2356899999999999999999999987644 34
Q ss_pred EEEecccccCcHHHHHHH
Q 004953 696 VLPLKLYIYLFIFQFSIK 713 (722)
Q Consensus 696 ~Lv~ey~~~G~L~~~l~~ 713 (722)
++||||+++|+|.+++.+
T Consensus 92 ~lv~e~~~g~~L~~~l~~ 109 (311)
T 3ork_A 92 YIVMEYVDGVTLRDIVHT 109 (311)
T ss_dssp EEEEECCCEEEHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHh
Confidence 999999999999888654
No 274
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=99.04 E-value=4.4e-10 Score=118.72 Aligned_cols=90 Identities=17% Similarity=0.290 Sum_probs=77.2
Q ss_pred cCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCC---ChhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEe
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEG---SLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPL 699 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~---~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~ 699 (722)
++|...+.||+|+||.||++... +++.||+|.+... .....+.|.+|+.++.+++|+|||++++++.+.+..++||
T Consensus 41 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 120 (335)
T 2owb_A 41 RRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVVL 120 (335)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred CceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEE
Confidence 45777789999999999999974 4789999998543 2234467999999999999999999999999999999999
Q ss_pred cccccCcHHHHHHH
Q 004953 700 KLYIYLFIFQFSIK 713 (722)
Q Consensus 700 ey~~~G~L~~~l~~ 713 (722)
||+++|+|.+++.+
T Consensus 121 e~~~~~~L~~~~~~ 134 (335)
T 2owb_A 121 ELCRRRSLLELHKR 134 (335)
T ss_dssp CCCTTCBHHHHHHH
T ss_pred ecCCCCCHHHHHhc
Confidence 99999999887654
No 275
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=99.04 E-value=2.2e-10 Score=123.97 Aligned_cols=90 Identities=23% Similarity=0.338 Sum_probs=75.9
Q ss_pred cCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCC-hhcHHHHHHHHHHHHhcCCCcccceEEEEEeCC--eEEEEe
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS-LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEG--EQVLPL 699 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~-~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~--~~~Lv~ 699 (722)
+.|...+.||+|+||+||+|... +|+.||||+++... ....+.+.+|++++.+++|||||++++++...+ ..++||
T Consensus 9 ~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~lv~ 88 (396)
T 4eut_A 9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIM 88 (396)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEE
T ss_pred CceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEEEE
Confidence 35677789999999999999975 48999999996533 233467899999999999999999999998755 779999
Q ss_pred cccccCcHHHHHHH
Q 004953 700 KLYIYLFIFQFSIK 713 (722)
Q Consensus 700 ey~~~G~L~~~l~~ 713 (722)
||+++|+|.+++++
T Consensus 89 e~~~~g~L~~~l~~ 102 (396)
T 4eut_A 89 EFCPCGSLYTVLEE 102 (396)
T ss_dssp CCCTTEEHHHHTTS
T ss_pred ecCCCCCHHHHHHh
Confidence 99999999887654
No 276
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...
Probab=99.04 E-value=2.3e-10 Score=119.56 Aligned_cols=99 Identities=20% Similarity=0.422 Sum_probs=81.5
Q ss_pred cHHHHHHhhcCccCCCeeecCCCeeEEEEEe------CCCcEEEEEEccCCCh-hcHHHHHHHHHHHHhc-CCCcccceE
Q 004953 615 TYGEMALATNNFNSSTQIGQGGYGKVYKGIL------PDGTVVAVKRAQEGSL-QGEKEFLTEIQFLSRL-HHRNLVSLV 686 (722)
Q Consensus 615 ~~~~~~~~t~~f~~~~~iG~G~fG~Vy~g~l------~~g~~vAVK~l~~~~~-~~~~~f~~E~~~l~~l-~H~Niv~l~ 686 (722)
...++....++|...+.||+|+||+||+|.. .+++.||||.++.... ...+.|.+|++++.++ +|||||+++
T Consensus 18 ~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~ 97 (316)
T 2xir_A 18 DASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLL 97 (316)
T ss_dssp CHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred cccceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeEE
Confidence 3445555667888899999999999999984 3467899999976433 3345799999999999 799999999
Q ss_pred EEEEeCC-eEEEEecccccCcHHHHHHH
Q 004953 687 GYCDEEG-EQVLPLKLYIYLFIFQFSIK 713 (722)
Q Consensus 687 g~~~~~~-~~~Lv~ey~~~G~L~~~l~~ 713 (722)
++|...+ ..++||||+++|+|.+++.+
T Consensus 98 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~ 125 (316)
T 2xir_A 98 GACTKPGGPLMVIVEFCKFGNLSTYLRS 125 (316)
T ss_dssp EEECCTTSCCEEEEECCTTEEHHHHHHT
T ss_pred EEEecCCCceEEEEEcCCCCcHHHHHHh
Confidence 9998754 58999999999999998764
No 277
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=99.04 E-value=6.3e-10 Score=119.01 Aligned_cols=93 Identities=16% Similarity=0.204 Sum_probs=78.7
Q ss_pred HhhcCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCCh----h----cHHHHHHHHHHHHhc-CCCcccceEEEEE
Q 004953 621 LATNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL----Q----GEKEFLTEIQFLSRL-HHRNLVSLVGYCD 690 (722)
Q Consensus 621 ~~t~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~~----~----~~~~f~~E~~~l~~l-~H~Niv~l~g~~~ 690 (722)
...++|...+.||+|+||+||+|... +|+.||||+++.... . ..+.+.+|+.++.++ +||||+++++++.
T Consensus 91 ~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~ 170 (365)
T 2y7j_A 91 EFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSYE 170 (365)
T ss_dssp HHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEE
T ss_pred hhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEEEe
Confidence 34456888899999999999999975 699999999865421 1 134588999999999 8999999999999
Q ss_pred eCCeEEEEecccccCcHHHHHHH
Q 004953 691 EEGEQVLPLKLYIYLFIFQFSIK 713 (722)
Q Consensus 691 ~~~~~~Lv~ey~~~G~L~~~l~~ 713 (722)
..+..++||||+++|+|.+++.+
T Consensus 171 ~~~~~~lv~e~~~g~~L~~~l~~ 193 (365)
T 2y7j_A 171 SSSFMFLVFDLMRKGELFDYLTE 193 (365)
T ss_dssp BSSEEEEEECCCTTCBHHHHHHH
T ss_pred eCCEEEEEEEeCCCCcHHHHHHh
Confidence 99999999999999999887654
No 278
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=99.03 E-value=2.8e-10 Score=126.99 Aligned_cols=90 Identities=21% Similarity=0.320 Sum_probs=73.6
Q ss_pred cCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCC--hhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEec
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS--LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPLK 700 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~--~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~e 700 (722)
+.|...+.||+|+||+||+|... ++..||||++.... ......+.+|++++.+++|||||+++++|...+..++|||
T Consensus 37 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e 116 (494)
T 3lij_A 37 EMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVME 116 (494)
T ss_dssp HHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred cCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEe
Confidence 35777889999999999999964 68899999986532 2234679999999999999999999999999999999999
Q ss_pred ccccCcHHHHHHH
Q 004953 701 LYIYLFIFQFSIK 713 (722)
Q Consensus 701 y~~~G~L~~~l~~ 713 (722)
|+++|+|.+++.+
T Consensus 117 ~~~~g~L~~~~~~ 129 (494)
T 3lij_A 117 CYKGGELFDEIIH 129 (494)
T ss_dssp CCCSCBHHHHHHH
T ss_pred cCCCCcHHHHHHH
Confidence 9999999876543
No 279
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*
Probab=99.03 E-value=5.4e-10 Score=117.05 Aligned_cols=87 Identities=22% Similarity=0.353 Sum_probs=73.7
Q ss_pred ccCCCeeecCCCeeEEEEEeC-----CCcEEEEEEccCCC-hhcHHHHHHHHHHHHhcCCCcccceEEEEEeC--CeEEE
Q 004953 626 FNSSTQIGQGGYGKVYKGILP-----DGTVVAVKRAQEGS-LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEE--GEQVL 697 (722)
Q Consensus 626 f~~~~~iG~G~fG~Vy~g~l~-----~g~~vAVK~l~~~~-~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~--~~~~L 697 (722)
|...+.||+|+||+||++.+. +|+.||||+++... ....+.|.+|++++.+++|||||++++++... ...++
T Consensus 33 ~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~l 112 (318)
T 3lxp_A 33 LKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQL 112 (318)
T ss_dssp EEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTEEEE
T ss_pred HhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCceEEE
Confidence 466789999999999998753 57899999997543 23356799999999999999999999999874 57899
Q ss_pred EecccccCcHHHHHH
Q 004953 698 PLKLYIYLFIFQFSI 712 (722)
Q Consensus 698 v~ey~~~G~L~~~l~ 712 (722)
||||+++|+|.+++.
T Consensus 113 v~e~~~~~~L~~~l~ 127 (318)
T 3lxp_A 113 VMEYVPLGSLRDYLP 127 (318)
T ss_dssp EECCCTTCBHHHHGG
T ss_pred EEecccCCcHHHHHh
Confidence 999999999988753
No 280
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}
Probab=99.03 E-value=3e-10 Score=119.89 Aligned_cols=89 Identities=19% Similarity=0.273 Sum_probs=75.4
Q ss_pred cCccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCCCh---hcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEe
Q 004953 624 NNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSL---QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPL 699 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~~~---~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~ 699 (722)
++|...+.||+|+||+||+|.. .+|+.||||++..... ...+.+.+|++++..++|||||++++++..++..++||
T Consensus 9 ~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~ 88 (336)
T 3h4j_B 9 GPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMVI 88 (336)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred CCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 4677788999999999999996 5689999999854211 12357899999999999999999999999999999999
Q ss_pred cccccCcHHHHHHH
Q 004953 700 KLYIYLFIFQFSIK 713 (722)
Q Consensus 700 ey~~~G~L~~~l~~ 713 (722)
||+ +|+|.+++.+
T Consensus 89 E~~-~g~l~~~l~~ 101 (336)
T 3h4j_B 89 EYA-GGELFDYIVE 101 (336)
T ss_dssp CCC-CEEHHHHHHH
T ss_pred ECC-CCcHHHHHHH
Confidence 999 7899887643
No 281
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=99.02 E-value=3e-10 Score=127.64 Aligned_cols=91 Identities=25% Similarity=0.305 Sum_probs=77.9
Q ss_pred hcCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCC---hhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEE
Q 004953 623 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS---LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLP 698 (722)
Q Consensus 623 t~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~---~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv 698 (722)
.++|...+.||+|+||.||+|... +|+.||||++.... ......+.+|+++|.+++|||||++++++.+.+..++|
T Consensus 183 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV 262 (576)
T 2acx_A 183 KNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLV 262 (576)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred ccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEEE
Confidence 356778889999999999999974 68999999985421 12345689999999999999999999999999999999
Q ss_pred ecccccCcHHHHHHH
Q 004953 699 LKLYIYLFIFQFSIK 713 (722)
Q Consensus 699 ~ey~~~G~L~~~l~~ 713 (722)
||||++|+|.+++++
T Consensus 263 mEy~~gg~L~~~l~~ 277 (576)
T 2acx_A 263 LTLMNGGDLKFHIYH 277 (576)
T ss_dssp ECCCCSCBHHHHHHS
T ss_pred EEcCCCCcHHHHHHh
Confidence 999999999887653
No 282
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Probab=99.02 E-value=4.6e-10 Score=120.04 Aligned_cols=89 Identities=17% Similarity=0.234 Sum_probs=76.2
Q ss_pred hhcCccCCCeeecCCCeeEEEEE------eCCCcEEEEEEccCCChhcHHHHHHHHHHHHhcC---CCcccceEEEEEeC
Q 004953 622 ATNNFNSSTQIGQGGYGKVYKGI------LPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLH---HRNLVSLVGYCDEE 692 (722)
Q Consensus 622 ~t~~f~~~~~iG~G~fG~Vy~g~------l~~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~---H~Niv~l~g~~~~~ 692 (722)
..+.|...+.||+|+||+||+|. ...++.||||+++.. ...+|..|++++.+++ |+|||++++++..+
T Consensus 63 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~~ 139 (365)
T 3e7e_A 63 GSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPA---NPWEFYIGTQLMERLKPSMQHMFMKFYSAHLFQ 139 (365)
T ss_dssp SSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSC---CHHHHHHHHHHHHHSCGGGGGGBCCEEEEEECS
T ss_pred CCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCC---ChhHHHHHHHHHHHhhhhhhhhhhhhheeeecC
Confidence 34667788899999999999994 446889999999754 3457888998888887 99999999999999
Q ss_pred CeEEEEecccccCcHHHHHHH
Q 004953 693 GEQVLPLKLYIYLFIFQFSIK 713 (722)
Q Consensus 693 ~~~~Lv~ey~~~G~L~~~l~~ 713 (722)
+..++|||||++|+|.+++.+
T Consensus 140 ~~~~lv~e~~~~g~L~~~l~~ 160 (365)
T 3e7e_A 140 NGSVLVGELYSYGTLLNAINL 160 (365)
T ss_dssp SCEEEEECCCCSCBHHHHHHH
T ss_pred CCcEEEEeccCCCcHHHHHHH
Confidence 999999999999999998865
No 283
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*
Probab=99.02 E-value=5.4e-10 Score=114.75 Aligned_cols=90 Identities=22% Similarity=0.339 Sum_probs=74.7
Q ss_pred hcCccCCCeeecCCCeeEEEEEeCC----CcEEEEEEccCCCh-hcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEE
Q 004953 623 TNNFNSSTQIGQGGYGKVYKGILPD----GTVVAVKRAQEGSL-QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVL 697 (722)
Q Consensus 623 t~~f~~~~~iG~G~fG~Vy~g~l~~----g~~vAVK~l~~~~~-~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~L 697 (722)
.++|...+.||+|+||.||+|.... +..||||..+.... ...+.|.+|+.++.+++|||||++++++ .++..++
T Consensus 14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~-~~~~~~l 92 (281)
T 1mp8_A 14 RERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVI-TENPVWI 92 (281)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEE-CSSSCEE
T ss_pred hHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEE-ccCccEE
Confidence 3467778899999999999998642 45799999875432 3346799999999999999999999998 4567899
Q ss_pred EecccccCcHHHHHHH
Q 004953 698 PLKLYIYLFIFQFSIK 713 (722)
Q Consensus 698 v~ey~~~G~L~~~l~~ 713 (722)
||||+++|+|.+++.+
T Consensus 93 v~e~~~~~~L~~~l~~ 108 (281)
T 1mp8_A 93 IMELCTLGELRSFLQV 108 (281)
T ss_dssp EEECCTTEEHHHHHHH
T ss_pred EEecCCCCCHHHHHHh
Confidence 9999999999888764
No 284
>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...
Probab=99.02 E-value=5.2e-10 Score=114.31 Aligned_cols=87 Identities=24% Similarity=0.280 Sum_probs=75.2
Q ss_pred cCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCC-hhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEecc
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS-LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPLKL 701 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~-~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~ey 701 (722)
++|+..+.||+|+||.||+|... +++.||||.++... ....+.+.+|+.++.+++||||+++++++.+++..++|+||
T Consensus 7 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 86 (276)
T 2yex_A 7 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEY 86 (276)
T ss_dssp HHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred cceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEEEEe
Confidence 45777889999999999999964 68999999986432 23346799999999999999999999999999999999999
Q ss_pred cccCcHHHH
Q 004953 702 YIYLFIFQF 710 (722)
Q Consensus 702 ~~~G~L~~~ 710 (722)
+++|+|.++
T Consensus 87 ~~~~~L~~~ 95 (276)
T 2yex_A 87 CSGGELFDR 95 (276)
T ss_dssp CTTEEGGGG
T ss_pred cCCCcHHHH
Confidence 999998554
No 285
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=99.02 E-value=4.9e-10 Score=128.60 Aligned_cols=83 Identities=22% Similarity=0.369 Sum_probs=69.9
Q ss_pred CeeecCCCeeEEEEEeC---CCcEEEEEEccCCCh--hcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEeccccc
Q 004953 630 TQIGQGGYGKVYKGILP---DGTVVAVKRAQEGSL--QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPLKLYIY 704 (722)
Q Consensus 630 ~~iG~G~fG~Vy~g~l~---~g~~vAVK~l~~~~~--~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~ey~~~ 704 (722)
+.||+|+||.||+|.+. .+..||||+++.... ...++|.+|+++|.+++|||||+++|+|. .+..++|||||++
T Consensus 375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~-~~~~~lv~E~~~~ 453 (635)
T 4fl3_A 375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICE-AESWMLVMEMAEL 453 (635)
T ss_dssp EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEE-SSSEEEEEECCTT
T ss_pred CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEe-cCCEEEEEEccCC
Confidence 47999999999999753 467899999975422 33568999999999999999999999996 4568899999999
Q ss_pred CcHHHHHHH
Q 004953 705 LFIFQFSIK 713 (722)
Q Consensus 705 G~L~~~l~~ 713 (722)
|+|.+++.+
T Consensus 454 g~L~~~l~~ 462 (635)
T 4fl3_A 454 GPLNKYLQQ 462 (635)
T ss_dssp EEHHHHHHH
T ss_pred CCHHHHHhh
Confidence 999888754
No 286
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*
Probab=99.02 E-value=7.3e-10 Score=115.06 Aligned_cols=89 Identities=20% Similarity=0.232 Sum_probs=77.5
Q ss_pred cCccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCCC-hhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEecc
Q 004953 624 NNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGS-LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPLKL 701 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~~-~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~ey 701 (722)
+.|...+.||+|+||.||+|.. .+++.||||.+.... ....+.|.+|+.++.+++||||+++++++...+..++||||
T Consensus 22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 101 (303)
T 3a7i_A 22 ELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEY 101 (303)
T ss_dssp GTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred HHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEEe
Confidence 4577788999999999999985 468999999986543 23456799999999999999999999999999999999999
Q ss_pred cccCcHHHHHH
Q 004953 702 YIYLFIFQFSI 712 (722)
Q Consensus 702 ~~~G~L~~~l~ 712 (722)
+++|+|.+++.
T Consensus 102 ~~~~~L~~~~~ 112 (303)
T 3a7i_A 102 LGGGSALDLLE 112 (303)
T ss_dssp CTTEEHHHHHT
T ss_pred CCCCcHHHHHh
Confidence 99999988753
No 287
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=99.01 E-value=1.5e-10 Score=127.42 Aligned_cols=90 Identities=20% Similarity=0.162 Sum_probs=69.0
Q ss_pred cCccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCC---ChhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEe
Q 004953 624 NNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEG---SLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPL 699 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~---~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~ 699 (722)
++|...+.||+|+||.||+|.. .+|+.||||+++.. .......+.+|++++.+++|||||+++++|...+..++||
T Consensus 148 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~ 227 (446)
T 4ejn_A 148 NEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVM 227 (446)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEEEEEE
T ss_pred HHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEEEE
Confidence 5688889999999999999985 46899999998642 2223356889999999999999999999999999999999
Q ss_pred cccccCcHHHHHHH
Q 004953 700 KLYIYLFIFQFSIK 713 (722)
Q Consensus 700 ey~~~G~L~~~l~~ 713 (722)
|||++|+|.+++.+
T Consensus 228 e~~~~~~L~~~l~~ 241 (446)
T 4ejn_A 228 EYANGGELFFHLSR 241 (446)
T ss_dssp CCCSSCBHHHHHHH
T ss_pred eeCCCCcHHHHHHh
Confidence 99999999877643
No 288
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=99.01 E-value=3.1e-10 Score=123.83 Aligned_cols=88 Identities=19% Similarity=0.286 Sum_probs=71.3
Q ss_pred hhcCccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCCCh--------hcHHHHHHHHHHHHhcCCCcccceEEEEEeC
Q 004953 622 ATNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSL--------QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEE 692 (722)
Q Consensus 622 ~t~~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~~~--------~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~ 692 (722)
..++|...+.||+|+||+||+|.. .+++.||||.+..... .....|.+|+++|.+++|||||++++++. .
T Consensus 133 ~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~-~ 211 (419)
T 3i6u_A 133 LRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFD-A 211 (419)
T ss_dssp HHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEE-S
T ss_pred hhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEe-c
Confidence 346788889999999999999986 4588999999854211 11124889999999999999999999975 5
Q ss_pred CeEEEEecccccCcHHHH
Q 004953 693 GEQVLPLKLYIYLFIFQF 710 (722)
Q Consensus 693 ~~~~Lv~ey~~~G~L~~~ 710 (722)
+..++|||||++|+|.++
T Consensus 212 ~~~~lv~e~~~~g~L~~~ 229 (419)
T 3i6u_A 212 EDYYIVLELMEGGELFDK 229 (419)
T ss_dssp SEEEEEEECCTTCBGGGG
T ss_pred CceEEEEEcCCCCcHHHH
Confidence 568999999999999554
No 289
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Probab=99.01 E-value=4.1e-10 Score=115.79 Aligned_cols=90 Identities=21% Similarity=0.323 Sum_probs=76.9
Q ss_pred cCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCC---hhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEe
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS---LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPL 699 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~---~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~ 699 (722)
++|...+.||+|+||.||+|... ++..||||.+.... ....+.+.+|++++.+++||||+++++++...+..++||
T Consensus 14 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 93 (284)
T 2vgo_A 14 DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLML 93 (284)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEEEE
Confidence 45777889999999999999975 57889999985421 122457999999999999999999999999999999999
Q ss_pred cccccCcHHHHHHH
Q 004953 700 KLYIYLFIFQFSIK 713 (722)
Q Consensus 700 ey~~~G~L~~~l~~ 713 (722)
||+++|+|.+++.+
T Consensus 94 e~~~~~~L~~~l~~ 107 (284)
T 2vgo_A 94 EFAPRGELYKELQK 107 (284)
T ss_dssp CCCTTEEHHHHHHH
T ss_pred EeCCCCcHHHHHHh
Confidence 99999999887754
No 290
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=99.01 E-value=4.5e-10 Score=128.50 Aligned_cols=81 Identities=23% Similarity=0.445 Sum_probs=70.1
Q ss_pred eeecCCCeeEEEEEeC---CCcEEEEEEccCCCh-hcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEecccccCc
Q 004953 631 QIGQGGYGKVYKGILP---DGTVVAVKRAQEGSL-QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPLKLYIYLF 706 (722)
Q Consensus 631 ~iG~G~fG~Vy~g~l~---~g~~vAVK~l~~~~~-~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~ey~~~G~ 706 (722)
.||+|+||.||+|.+. ++..||||+++.... ...++|.+|+++|.+++|||||+++|+|.. +..++|||||++|+
T Consensus 343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~-~~~~lv~E~~~~g~ 421 (613)
T 2ozo_A 343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLVMEMAGGGP 421 (613)
T ss_dssp EEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES-SSEEEEEECCTTCB
T ss_pred EEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc-CCeEEEEEeCCCCc
Confidence 6999999999999864 456799999976432 345789999999999999999999999976 56899999999999
Q ss_pred HHHHHH
Q 004953 707 IFQFSI 712 (722)
Q Consensus 707 L~~~l~ 712 (722)
|.++++
T Consensus 422 L~~~l~ 427 (613)
T 2ozo_A 422 LHKFLV 427 (613)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 988864
No 291
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*
Probab=99.01 E-value=3.8e-10 Score=120.04 Aligned_cols=91 Identities=15% Similarity=0.093 Sum_probs=77.8
Q ss_pred hcCccCCCeeecCCCeeEEEEEeCC-CcEEEEEEccCCC---hhcHHHHHHHHHHHHhc-CCCcccceEEEEEeCCeEEE
Q 004953 623 TNNFNSSTQIGQGGYGKVYKGILPD-GTVVAVKRAQEGS---LQGEKEFLTEIQFLSRL-HHRNLVSLVGYCDEEGEQVL 697 (722)
Q Consensus 623 t~~f~~~~~iG~G~fG~Vy~g~l~~-g~~vAVK~l~~~~---~~~~~~f~~E~~~l~~l-~H~Niv~l~g~~~~~~~~~L 697 (722)
.++|...+.||+|+||+||++.... |+.||||+++... ....+.+..|.+++..+ +||+|+++++++.+.+..++
T Consensus 19 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~l 98 (353)
T 2i0e_A 19 LTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYF 98 (353)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEEE
T ss_pred hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEEE
Confidence 4578888999999999999999754 7899999986431 12345688999999988 89999999999999999999
Q ss_pred EecccccCcHHHHHHH
Q 004953 698 PLKLYIYLFIFQFSIK 713 (722)
Q Consensus 698 v~ey~~~G~L~~~l~~ 713 (722)
||||+++|+|.+++++
T Consensus 99 v~E~~~gg~L~~~l~~ 114 (353)
T 2i0e_A 99 VMEYVNGGDLMYHIQQ 114 (353)
T ss_dssp EEECCCSCBHHHHHHH
T ss_pred EEeCCCCCcHHHHHHh
Confidence 9999999999888765
No 292
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Probab=99.01 E-value=4.3e-10 Score=115.23 Aligned_cols=88 Identities=27% Similarity=0.401 Sum_probs=74.7
Q ss_pred cCccCCCeeecCCCeeEEEEEeCCCcEEEEEEccCCChhcHHHHHHHHHHHHhcCCCcccceEEEEEeC-CeEEEEeccc
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEE-GEQVLPLKLY 702 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~-~~~~Lv~ey~ 702 (722)
++|...+.||+|+||+||+|.. +|+.||||.++... ..+.|.+|++++.+++|||||++++++.+. +..++||||+
T Consensus 21 ~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~ 97 (278)
T 1byg_A 21 KELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYM 97 (278)
T ss_dssp GGEEEEEEEEECSSCEEEEEEE-TTEEEEEEECCCCC----HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECCC
T ss_pred hhceEEeEEecCCCceEEEEEE-cCCEEEEEEecchh--HHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEEEecC
Confidence 4577788999999999999987 58899999997543 346799999999999999999999998654 4789999999
Q ss_pred ccCcHHHHHHHH
Q 004953 703 IYLFIFQFSIKL 714 (722)
Q Consensus 703 ~~G~L~~~l~~~ 714 (722)
++|+|.+++.+.
T Consensus 98 ~~~~L~~~l~~~ 109 (278)
T 1byg_A 98 AKGSLVDYLRSR 109 (278)
T ss_dssp TTEEHHHHHHHH
T ss_pred CCCCHHHHHHhc
Confidence 999999887653
No 293
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*
Probab=99.01 E-value=2.2e-10 Score=119.64 Aligned_cols=92 Identities=25% Similarity=0.412 Sum_probs=71.6
Q ss_pred HhhcCccCCCeeecCCCeeEEEEEeC----CCcEEEEEEccCCC--hhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCe
Q 004953 621 LATNNFNSSTQIGQGGYGKVYKGILP----DGTVVAVKRAQEGS--LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGE 694 (722)
Q Consensus 621 ~~t~~f~~~~~iG~G~fG~Vy~g~l~----~g~~vAVK~l~~~~--~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~ 694 (722)
...++|...+.||+|+||.||+|... .+..||||.++... ....+.|.+|++++.+++||||+++++++...+.
T Consensus 31 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~ 110 (313)
T 3brb_A 31 IDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMSS 110 (313)
T ss_dssp CCGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC---
T ss_pred cCHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEeeccc
Confidence 34566777889999999999999863 24589999986542 2334679999999999999999999999987553
Q ss_pred -----EEEEecccccCcHHHHHH
Q 004953 695 -----QVLPLKLYIYLFIFQFSI 712 (722)
Q Consensus 695 -----~~Lv~ey~~~G~L~~~l~ 712 (722)
.++||||+++|+|.+++.
T Consensus 111 ~~~~~~~~v~e~~~~~~L~~~l~ 133 (313)
T 3brb_A 111 QGIPKPMVILPFMKYGDLHTYLL 133 (313)
T ss_dssp ----CEEEEEECCTTCBHHHHHH
T ss_pred cCCcccEEEEecccCCCHHHHHH
Confidence 499999999999988874
No 294
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=99.01 E-value=4.7e-10 Score=124.83 Aligned_cols=89 Identities=24% Similarity=0.378 Sum_probs=77.1
Q ss_pred cCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCC---hhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEe
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS---LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPL 699 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~---~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~ 699 (722)
+.|...+.||+|+||.||+|... +|+.||||++.... ....+.+.+|++++.+++|||||++++++...+..++|+
T Consensus 26 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 105 (484)
T 3nyv_A 26 DRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLVG 105 (484)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred CceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEE
Confidence 35777889999999999999964 68999999985432 234567999999999999999999999999999999999
Q ss_pred cccccCcHHHHHH
Q 004953 700 KLYIYLFIFQFSI 712 (722)
Q Consensus 700 ey~~~G~L~~~l~ 712 (722)
||+++|+|.+++.
T Consensus 106 e~~~~~~L~~~~~ 118 (484)
T 3nyv_A 106 EVYTGGELFDEII 118 (484)
T ss_dssp CCCCSCBHHHHHH
T ss_pred ecCCCCCHHHHHH
Confidence 9999999977653
No 295
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*
Probab=99.01 E-value=4.1e-10 Score=118.58 Aligned_cols=91 Identities=24% Similarity=0.357 Sum_probs=74.8
Q ss_pred hhcCccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCCChh--cHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEE
Q 004953 622 ATNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQ--GEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLP 698 (722)
Q Consensus 622 ~t~~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~~~~--~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv 698 (722)
..++|...+.||+|+||+||+|.. .+|+.||||+++..... ..+.+.+|++++.+++|||||++++++..++..++|
T Consensus 32 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv 111 (329)
T 3gbz_A 32 SIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLHLI 111 (329)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEETTEEEEE
T ss_pred chhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEEEE
Confidence 345788889999999999999985 46889999999654322 235688999999999999999999999999999999
Q ss_pred ecccccCcHHHHHHH
Q 004953 699 LKLYIYLFIFQFSIK 713 (722)
Q Consensus 699 ~ey~~~G~L~~~l~~ 713 (722)
|||++ |+|.+++.+
T Consensus 112 ~e~~~-~~L~~~~~~ 125 (329)
T 3gbz_A 112 FEYAE-NDLKKYMDK 125 (329)
T ss_dssp EECCS-EEHHHHHHH
T ss_pred EecCC-CCHHHHHhh
Confidence 99998 588777654
No 296
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}
Probab=99.01 E-value=3.1e-10 Score=125.43 Aligned_cols=89 Identities=20% Similarity=0.266 Sum_probs=76.3
Q ss_pred cCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCCh---hcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEe
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL---QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPL 699 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~~---~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~ 699 (722)
++|...+.||+|+||.||+|... +|+.||||+++.... ...+.+.+|+.++..++|||||++++++...+..++||
T Consensus 16 ~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv~ 95 (476)
T 2y94_A 16 GHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMVM 95 (476)
T ss_dssp TTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEE
Confidence 45777789999999999999964 689999999864321 22357899999999999999999999999999999999
Q ss_pred cccccCcHHHHHH
Q 004953 700 KLYIYLFIFQFSI 712 (722)
Q Consensus 700 ey~~~G~L~~~l~ 712 (722)
||+++|+|.+++.
T Consensus 96 E~~~gg~L~~~l~ 108 (476)
T 2y94_A 96 EYVSGGELFDYIC 108 (476)
T ss_dssp ECCSSEEHHHHTT
T ss_pred eCCCCCcHHHHHH
Confidence 9999999987753
No 297
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*
Probab=99.01 E-value=2e-10 Score=119.17 Aligned_cols=92 Identities=26% Similarity=0.278 Sum_probs=65.4
Q ss_pred hhcCccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCCC-hhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEe
Q 004953 622 ATNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGS-LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPL 699 (722)
Q Consensus 622 ~t~~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~~-~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~ 699 (722)
..++|...+.||+|+||.||+|.. .++..||||++.... ....+++.+|++++.+++||||+++++++...+..++||
T Consensus 13 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 92 (303)
T 2vwi_A 13 NRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWLVM 92 (303)
T ss_dssp CCCCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEESSSCEEEEE
T ss_pred chhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcEEEe
Confidence 456788889999999999999985 468999999986533 233457899999999999999999999999999999999
Q ss_pred cccccCcHHHHHHH
Q 004953 700 KLYIYLFIFQFSIK 713 (722)
Q Consensus 700 ey~~~G~L~~~l~~ 713 (722)
||+++|+|.+++.+
T Consensus 93 e~~~~~~L~~~l~~ 106 (303)
T 2vwi_A 93 KLLSGGSVLDIIKH 106 (303)
T ss_dssp ECCTTCBHHHHHHH
T ss_pred hhccCCchHHHHHH
Confidence 99999999998875
No 298
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Probab=99.01 E-value=2.9e-10 Score=119.41 Aligned_cols=99 Identities=23% Similarity=0.357 Sum_probs=82.5
Q ss_pred ccHHHHHHhhcCccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCCChhcHHHHHHHHHHHHhc-CCCcccceEEEEEe
Q 004953 614 FTYGEMALATNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRL-HHRNLVSLVGYCDE 691 (722)
Q Consensus 614 ~~~~~~~~~t~~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l-~H~Niv~l~g~~~~ 691 (722)
+++.++....+.|...+.||+|+||.||+|.. .+|+.||||.+.... ...+++.+|+.++.++ +||||+++++++..
T Consensus 14 ~~~~~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~ 92 (326)
T 2x7f_A 14 IDLSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTG-DEEEEIKQEINMLKKYSHHRNIATYYGAFIK 92 (326)
T ss_dssp --CCCCCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS-STTHHHHHHHHHHHHHCCSTTBCCEEEEEEE
T ss_pred ccchhccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCc-ccHHHHHHHHHHHHhccCCCCeeeeeeEEee
Confidence 44455555677888899999999999999996 468999999986543 2346799999999999 89999999999987
Q ss_pred ------CCeEEEEecccccCcHHHHHHH
Q 004953 692 ------EGEQVLPLKLYIYLFIFQFSIK 713 (722)
Q Consensus 692 ------~~~~~Lv~ey~~~G~L~~~l~~ 713 (722)
.+..++||||+++|+|.+++.+
T Consensus 93 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~ 120 (326)
T 2x7f_A 93 KNPPGMDDQLWLVMEFCGAGSVTDLIKN 120 (326)
T ss_dssp CC--CCCCEEEEEEECCTTEEHHHHHHH
T ss_pred ccCccccceEEEEEEcCCCCcHHHHHHh
Confidence 4678999999999999888765
No 299
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=99.00 E-value=8.3e-10 Score=113.71 Aligned_cols=82 Identities=23% Similarity=0.444 Sum_probs=70.5
Q ss_pred CeeecCCCeeEEEEEeC---CCcEEEEEEccCCC-hhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEecccccC
Q 004953 630 TQIGQGGYGKVYKGILP---DGTVVAVKRAQEGS-LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPLKLYIYL 705 (722)
Q Consensus 630 ~~iG~G~fG~Vy~g~l~---~g~~vAVK~l~~~~-~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~ey~~~G 705 (722)
..||+|+||.||+|... ++..||||.++... ....++|.+|++++.+++||||+++++++ ..+..++||||+++|
T Consensus 16 ~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~-~~~~~~lv~e~~~~~ 94 (287)
T 1u59_A 16 IELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVC-QAEALMLVMEMAGGG 94 (287)
T ss_dssp EEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-ESSSEEEEEECCTTE
T ss_pred ccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEe-cCCCcEEEEEeCCCC
Confidence 38999999999999853 57789999997643 33456799999999999999999999999 566789999999999
Q ss_pred cHHHHHH
Q 004953 706 FIFQFSI 712 (722)
Q Consensus 706 ~L~~~l~ 712 (722)
+|.+++.
T Consensus 95 ~L~~~l~ 101 (287)
T 1u59_A 95 PLHKFLV 101 (287)
T ss_dssp EHHHHHT
T ss_pred CHHHHHH
Confidence 9988763
No 300
>2eue_A Carbon catabolite derepressing protein kinase; kinase domain; 2.20A {Saccharomyces cerevisiae} PDB: 3fam_A 3hyh_A 3dae_A 2fh9_A 3mn3_A
Probab=99.00 E-value=8.4e-10 Score=112.87 Aligned_cols=87 Identities=21% Similarity=0.342 Sum_probs=65.0
Q ss_pred cCccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCCCh---hcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEe
Q 004953 624 NNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSL---QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPL 699 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~~~---~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~ 699 (722)
++|...+.||+|+||.||+|.. .+|+.||||++..... ...+.+.+|++++.+++||||+++++++.+.+..++||
T Consensus 13 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 92 (275)
T 2eue_A 13 GNYQIVKTLGEGSFAKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVI 92 (275)
T ss_dssp CCBCCCC---------EEEEECTTTCCEEEEEEECSCC-----CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSCEEEEE
T ss_pred cceEEEEEEEcCCCEEEEEEEECCCCCEEEEEEEEhhhcchHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCeEEEEe
Confidence 4688889999999999999985 4689999999865422 23457899999999999999999999999999999999
Q ss_pred cccccCcHHHHH
Q 004953 700 KLYIYLFIFQFS 711 (722)
Q Consensus 700 ey~~~G~L~~~l 711 (722)
||+ +|++.+++
T Consensus 93 e~~-~~~l~~~~ 103 (275)
T 2eue_A 93 EYA-GNELFDYI 103 (275)
T ss_dssp ECC-CEEHHHHH
T ss_pred hhc-CCcHHHHH
Confidence 999 67776654
No 301
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*
Probab=99.00 E-value=3.9e-10 Score=116.43 Aligned_cols=89 Identities=21% Similarity=0.340 Sum_probs=71.9
Q ss_pred cCccCCC-eeecCCCeeEEEEEe---CCCcEEEEEEccCCCh--hcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEE
Q 004953 624 NNFNSST-QIGQGGYGKVYKGIL---PDGTVVAVKRAQEGSL--QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVL 697 (722)
Q Consensus 624 ~~f~~~~-~iG~G~fG~Vy~g~l---~~g~~vAVK~l~~~~~--~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~L 697 (722)
.+|...+ .||+|+||.||+|.. ..+..||||.++.... ...++|.+|++++.+++||||+++++++ ..+..++
T Consensus 16 ~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-~~~~~~l 94 (291)
T 1xbb_A 16 KLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGIC-EAESWML 94 (291)
T ss_dssp GGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEE-ESSSEEE
T ss_pred hhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-CCCCcEE
Confidence 3455555 899999999999964 2467899999975432 2246799999999999999999999999 6677899
Q ss_pred EecccccCcHHHHHHH
Q 004953 698 PLKLYIYLFIFQFSIK 713 (722)
Q Consensus 698 v~ey~~~G~L~~~l~~ 713 (722)
||||+++|+|.+++.+
T Consensus 95 v~e~~~~~~L~~~l~~ 110 (291)
T 1xbb_A 95 VMEMAELGPLNKYLQQ 110 (291)
T ss_dssp EEECCTTEEHHHHHHH
T ss_pred EEEeCCCCCHHHHHHh
Confidence 9999999999888754
No 302
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=99.00 E-value=4.7e-10 Score=124.87 Aligned_cols=90 Identities=23% Similarity=0.334 Sum_probs=77.2
Q ss_pred cCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCC--ChhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEec
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEG--SLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPLK 700 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~--~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~e 700 (722)
++|...+.||+|+||+||++... +|+.||||++... .......+.+|++++.+++|||||++++++...+..++|||
T Consensus 22 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e 101 (486)
T 3mwu_A 22 ERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVGE 101 (486)
T ss_dssp HHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred cceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEEEE
Confidence 35777889999999999999964 6899999998532 12235679999999999999999999999999999999999
Q ss_pred ccccCcHHHHHHH
Q 004953 701 LYIYLFIFQFSIK 713 (722)
Q Consensus 701 y~~~G~L~~~l~~ 713 (722)
|+++|+|.+++.+
T Consensus 102 ~~~~~~L~~~~~~ 114 (486)
T 3mwu_A 102 LYTGGELFDEIIK 114 (486)
T ss_dssp CCCSCBHHHHHHH
T ss_pred cCCCCcHHHHHHh
Confidence 9999999876643
No 303
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A
Probab=99.00 E-value=4.9e-10 Score=116.03 Aligned_cols=89 Identities=19% Similarity=0.308 Sum_probs=75.6
Q ss_pred cCccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCCChhcHHHHHHHHHHHHhcCCCcccceEEEEEe-----------
Q 004953 624 NNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDE----------- 691 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~----------- 691 (722)
++|...+.||+|+||.||+|.. .+|+.||||++... ....+.+.+|++++.+++||||+++++++.+
T Consensus 6 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~ 84 (303)
T 1zy4_A 6 SDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT-EEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMTAV 84 (303)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEE-HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC-----
T ss_pred ccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEecc-HHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhccc
Confidence 4577788999999999999996 46899999998542 2334679999999999999999999999865
Q ss_pred --CCeEEEEecccccCcHHHHHHH
Q 004953 692 --EGEQVLPLKLYIYLFIFQFSIK 713 (722)
Q Consensus 692 --~~~~~Lv~ey~~~G~L~~~l~~ 713 (722)
.+..++||||+++|+|.+++.+
T Consensus 85 ~~~~~~~lv~e~~~~~~L~~~l~~ 108 (303)
T 1zy4_A 85 KKKSTLFIQMEYCENGTLYDLIHS 108 (303)
T ss_dssp -CEEEEEEEEECCCSCBHHHHHHH
T ss_pred ccCCceEEEEecCCCCCHHHhhhc
Confidence 3568999999999999888764
No 304
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Probab=99.00 E-value=4.1e-10 Score=115.92 Aligned_cols=87 Identities=32% Similarity=0.483 Sum_probs=72.6
Q ss_pred cCccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCCChhc-------HHHHHHHHHHHHhcCCCcccceEEEEEeCCeE
Q 004953 624 NNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQG-------EKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQ 695 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~~~~~-------~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~ 695 (722)
++|...+.||+|+||+||+|.. .+++.||||++....... .+.|.+|++++.+++|||||++++++.+..
T Consensus 19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~-- 96 (287)
T 4f0f_A 19 NEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPP-- 96 (287)
T ss_dssp TTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTT--
T ss_pred ccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCC--
Confidence 5677788999999999999996 468999999986432211 157999999999999999999999986554
Q ss_pred EEEecccccCcHHHHHH
Q 004953 696 VLPLKLYIYLFIFQFSI 712 (722)
Q Consensus 696 ~Lv~ey~~~G~L~~~l~ 712 (722)
++||||+++|+|.+++.
T Consensus 97 ~lv~e~~~~~~L~~~l~ 113 (287)
T 4f0f_A 97 RMVMEFVPCGDLYHRLL 113 (287)
T ss_dssp EEEEECCTTCBHHHHHH
T ss_pred eEEEEecCCCCHHHHHh
Confidence 69999999999977763
No 305
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*
Probab=99.00 E-value=6.8e-10 Score=116.96 Aligned_cols=87 Identities=26% Similarity=0.411 Sum_probs=74.8
Q ss_pred cCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCCh--hcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEec
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL--QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPLK 700 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~~--~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~e 700 (722)
++|...+.||+|+||.||+|... +|+.||||++..... ...+.+.+|++++.+++|||||+++++|...+..++|||
T Consensus 25 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 104 (331)
T 4aaa_A 25 EKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVFE 104 (331)
T ss_dssp GGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred hhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEEEe
Confidence 45777789999999999999974 489999999854432 234568899999999999999999999999999999999
Q ss_pred ccccCcHHHH
Q 004953 701 LYIYLFIFQF 710 (722)
Q Consensus 701 y~~~G~L~~~ 710 (722)
|+++++|.++
T Consensus 105 ~~~~~~l~~~ 114 (331)
T 4aaa_A 105 FVDHTILDDL 114 (331)
T ss_dssp CCSEEHHHHH
T ss_pred cCCcchHHHH
Confidence 9999988665
No 306
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Probab=99.00 E-value=6.6e-10 Score=115.12 Aligned_cols=85 Identities=21% Similarity=0.357 Sum_probs=71.2
Q ss_pred cCccCCCeeecCCCeeEEEEEeCCCcEEEEEEccCCChhcHHHHHHHHHHHHh--cCCCcccceEEEEEeC----CeEEE
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSR--LHHRNLVSLVGYCDEE----GEQVL 697 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~--l~H~Niv~l~g~~~~~----~~~~L 697 (722)
++|...+.||+|+||+||+|.. +|+.||||++.. ...+.+..|.+++.. ++|||||++++++... +..++
T Consensus 8 ~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~---~~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~~l 83 (301)
T 3q4u_A 8 RDITLLECVGKGRYGEVWRGSW-QGENVAVKIFSS---RDEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLWL 83 (301)
T ss_dssp GGCEEEEEEEECSSEEEEEEEE-TTEEEEEEEECG---GGHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEEEE
T ss_pred CcEEEEEeeccCCCcEEEEEEE-CCEEEEEEEecc---ccchhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCceeEE
Confidence 4677788999999999999998 789999999864 244567778888777 7999999999998653 45899
Q ss_pred EecccccCcHHHHHH
Q 004953 698 PLKLYIYLFIFQFSI 712 (722)
Q Consensus 698 v~ey~~~G~L~~~l~ 712 (722)
||||+++|+|.++++
T Consensus 84 v~e~~~~g~L~~~l~ 98 (301)
T 3q4u_A 84 ITHYHEMGSLYDYLQ 98 (301)
T ss_dssp EECCCTTCBHHHHHT
T ss_pred ehhhccCCCHHHHHh
Confidence 999999999988764
No 307
>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*
Probab=99.00 E-value=5.1e-10 Score=119.47 Aligned_cols=97 Identities=25% Similarity=0.291 Sum_probs=79.8
Q ss_pred cHHHHHHhhcCccCCCeeecCCCeeEEEEEeCCCcEEEEEEccCCChh-----------cHHHHHHHHHHHHhcCCCccc
Q 004953 615 TYGEMALATNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQ-----------GEKEFLTEIQFLSRLHHRNLV 683 (722)
Q Consensus 615 ~~~~~~~~t~~f~~~~~iG~G~fG~Vy~g~l~~g~~vAVK~l~~~~~~-----------~~~~f~~E~~~l~~l~H~Niv 683 (722)
..+++....++|...+.||+|+||.||+|...+|..||||++...... ..+.|.+|++++.+++|||||
T Consensus 13 ~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv 92 (362)
T 3pg1_A 13 LIAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNIL 92 (362)
T ss_dssp HHHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBC
T ss_pred HHHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCcc
Confidence 456777888999999999999999999999878999999998542111 126799999999999999999
Q ss_pred ceEEEEEeC-----CeEEEEecccccCcHHHHHH
Q 004953 684 SLVGYCDEE-----GEQVLPLKLYIYLFIFQFSI 712 (722)
Q Consensus 684 ~l~g~~~~~-----~~~~Lv~ey~~~G~L~~~l~ 712 (722)
++++++... ...++||||++ |+|.+++.
T Consensus 93 ~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~ 125 (362)
T 3pg1_A 93 GLRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIH 125 (362)
T ss_dssp CCSEEEEECCTTTCCEEEEEEECCS-EEHHHHHH
T ss_pred ceeeeEEeccCCCcceEEEEEccCC-CCHHHHHH
Confidence 999999653 35799999998 67766543
No 308
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=98.99 E-value=4.9e-10 Score=125.49 Aligned_cols=90 Identities=22% Similarity=0.325 Sum_probs=77.6
Q ss_pred cCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCCh---hcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEe
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL---QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPL 699 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~~---~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~ 699 (722)
++|...+.||+|+||+||++... +|+.||||++..... ...+.+.+|++++.+++|||||++++++.+.+..++||
T Consensus 185 ~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lVm 264 (543)
T 3c4z_A 185 DWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLVM 264 (543)
T ss_dssp GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEEEE
Confidence 46777789999999999999974 589999999954321 23457899999999999999999999999999999999
Q ss_pred cccccCcHHHHHHH
Q 004953 700 KLYIYLFIFQFSIK 713 (722)
Q Consensus 700 ey~~~G~L~~~l~~ 713 (722)
||+++|+|.+++++
T Consensus 265 E~~~gg~L~~~l~~ 278 (543)
T 3c4z_A 265 TIMNGGDIRYHIYN 278 (543)
T ss_dssp CCCTTCBHHHHHHT
T ss_pred EeccCCCHHHHHHH
Confidence 99999999887754
No 309
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A
Probab=98.99 E-value=1.1e-09 Score=112.90 Aligned_cols=88 Identities=23% Similarity=0.304 Sum_probs=73.4
Q ss_pred ccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCC--ChhcHHHHHHHHHHHHhcCCCcccceEEEEEe----CCeEEEE
Q 004953 626 FNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEG--SLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDE----EGEQVLP 698 (722)
Q Consensus 626 f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~--~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~----~~~~~Lv 698 (722)
|...+.||+|+||+||+|.. .++..||+|.+... .....+.|.+|+.++.+++|||||++++++.. .+..++|
T Consensus 28 ~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~lv 107 (290)
T 1t4h_A 28 LKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLV 107 (290)
T ss_dssp EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEE
T ss_pred EEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEEEE
Confidence 45556899999999999986 45789999998643 23345679999999999999999999999875 3568999
Q ss_pred ecccccCcHHHHHHH
Q 004953 699 LKLYIYLFIFQFSIK 713 (722)
Q Consensus 699 ~ey~~~G~L~~~l~~ 713 (722)
|||+++|+|.+++.+
T Consensus 108 ~e~~~~~~L~~~l~~ 122 (290)
T 1t4h_A 108 TELMTSGTLKTYLKR 122 (290)
T ss_dssp EECCCSCBHHHHHHH
T ss_pred EEecCCCCHHHHHHH
Confidence 999999999888765
No 310
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*
Probab=98.99 E-value=8.9e-10 Score=113.48 Aligned_cols=90 Identities=24% Similarity=0.341 Sum_probs=78.1
Q ss_pred cCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCC--hhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEec
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS--LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPLK 700 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~--~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~e 700 (722)
++|...+.||+|+||+||+|... +++.||||++.... ....+.+.+|++++.+++||||+++++++...+..++|+|
T Consensus 22 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 101 (287)
T 2wei_A 22 ERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVGE 101 (287)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred hcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEEEEEE
Confidence 46888899999999999999975 68999999985432 2345679999999999999999999999999999999999
Q ss_pred ccccCcHHHHHHH
Q 004953 701 LYIYLFIFQFSIK 713 (722)
Q Consensus 701 y~~~G~L~~~l~~ 713 (722)
|+++|+|.+++.+
T Consensus 102 ~~~~~~L~~~l~~ 114 (287)
T 2wei_A 102 LYTGGELFDEIIK 114 (287)
T ss_dssp CCCSCBHHHHHHH
T ss_pred ccCCCCHHHHHHh
Confidence 9999999877643
No 311
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.99 E-value=8.6e-09 Score=111.35 Aligned_cols=262 Identities=11% Similarity=0.062 Sum_probs=165.8
Q ss_pred CCccceeEEEcCCCCCccccCccccCCCCCCEEECCCCCCccCC----------------------CccccCCCCCCEEe
Q 004953 79 DGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSI----------------------PKEIGNIKSLELLL 136 (722)
Q Consensus 79 ~~~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~----------------------p~~~~~l~~L~~L~ 136 (722)
.++.+|+.+++.++ ++......|.++.+|+.+.+..+ +.... ..+|.++++|+.+.
T Consensus 91 ~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~ 168 (394)
T 4fs7_A 91 ENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITIPEGVTVIGDEAFATCESLEYVS 168 (394)
T ss_dssp TTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCEEE
T ss_pred hCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccccccCccccccchhhhcccCCCcEEe
Confidence 34567899988754 55555567788888887776543 22122 23455566666666
Q ss_pred ccCCcCCCCCCccCCCCCCCcEEEcccCCCCCCCchhhcCcCCCCEEECCCccccCCCCcCCCCCCccceeecccCCCCC
Q 004953 137 LNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTG 216 (722)
Q Consensus 137 L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 216 (722)
+.++. .......|.++++|+.+.+..| ++.+....|.++..|+.+.+..+... +...+....+|+.+.+..+ ++.
T Consensus 169 l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~ 243 (394)
T 4fs7_A 169 LPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTE 243 (394)
T ss_dssp CCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCE
T ss_pred cCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCCCceEEECCC-cee
Confidence 65433 2244445566666666666544 34344455666666666655554332 2223334456666666533 333
Q ss_pred CCCccCCCCCCCcEEECcCCCCCCCCcchhccCCCCCcEEEccCCCCccCCCCCCCCCCccEEEccCCCCCccCCCcccc
Q 004953 217 YLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLDLSSNQLNGSIPPGRLS 296 (722)
Q Consensus 217 ~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~ 296 (722)
.....+..+..|+.+.+..+... .....|..+..++.+....+.+. ...+..+.+|+.+.+..+ ++ .|+...|.
T Consensus 244 i~~~~f~~~~~l~~~~~~~~~~~--i~~~~F~~~~~l~~~~~~~~~i~--~~~F~~~~~L~~i~l~~~-i~-~I~~~aF~ 317 (394)
T 4fs7_A 244 LGKSVFYGCTDLESISIQNNKLR--IGGSLFYNCSGLKKVIYGSVIVP--EKTFYGCSSLTEVKLLDS-VK-FIGEEAFE 317 (394)
T ss_dssp ECSSTTTTCSSCCEEEECCTTCE--ECSCTTTTCTTCCEEEECSSEEC--TTTTTTCTTCCEEEECTT-CC-EECTTTTT
T ss_pred cccccccccccceeEEcCCCcce--eeccccccccccceeccCceeec--cccccccccccccccccc-cc-eechhhhc
Confidence 44557778888999988877543 23456788888888887766432 224677889999998765 55 66666564
Q ss_pred --CCcCEEEccCCcCcccCCccCCCCCCCCEEeCCCCcCcccCChhhhhhccCCCCcccEEEccCC
Q 004953 297 --LNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNN 360 (722)
Q Consensus 297 --~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~ls~N 360 (722)
.+|+.++|..+ ++.....+|.++.+|+.+++..| ++..-...|. ++.+|+.+++..+
T Consensus 318 ~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~-----~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 318 SCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQ-----GCINLKKVELPKR 376 (394)
T ss_dssp TCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBT-----TCTTCCEEEEEGG
T ss_pred CCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhh-----CCCCCCEEEECCC
Confidence 58999999754 77777788999999999999877 6633333443 3477888888754
No 312
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*
Probab=98.99 E-value=1.7e-10 Score=122.46 Aligned_cols=86 Identities=17% Similarity=0.273 Sum_probs=74.9
Q ss_pred cCccCCCeeecCCCeeEEEEEeCCCcEEEEEEccCCChhc-----------------HHHHHHHHHHHHhcCCCcccceE
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQG-----------------EKEFLTEIQFLSRLHHRNLVSLV 686 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~~g~~vAVK~l~~~~~~~-----------------~~~f~~E~~~l~~l~H~Niv~l~ 686 (722)
++|...+.||+|+||.||+|.. +|..||||++....... .+.|.+|++++.+++||||++++
T Consensus 31 ~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~ 109 (348)
T 2pml_X 31 NDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTCE 109 (348)
T ss_dssp TTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCCS
T ss_pred CceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceEE
Confidence 5688889999999999999999 89999999985321111 17899999999999999999999
Q ss_pred EEEEeCCeEEEEecccccCcHHHH
Q 004953 687 GYCDEEGEQVLPLKLYIYLFIFQF 710 (722)
Q Consensus 687 g~~~~~~~~~Lv~ey~~~G~L~~~ 710 (722)
+++...+..++||||+++|+|.++
T Consensus 110 ~~~~~~~~~~lv~e~~~~~~L~~~ 133 (348)
T 2pml_X 110 GIITNYDEVYIIYEYMENDSILKF 133 (348)
T ss_dssp EEEESSSEEEEEEECCTTCBSSEE
T ss_pred EEEeeCCeEEEEEeccCCCcHHHH
Confidence 999999999999999999988665
No 313
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}
Probab=98.99 E-value=9.3e-10 Score=114.85 Aligned_cols=89 Identities=21% Similarity=0.334 Sum_probs=73.2
Q ss_pred hhcCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCChhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEec
Q 004953 622 ATNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPLK 700 (722)
Q Consensus 622 ~t~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~e 700 (722)
..+.|...+.||+|+||.||+|... +|..||||.+.... ..+++.+|++++.+++||||+++++++...+..++|||
T Consensus 27 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~--~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 104 (314)
T 3com_A 27 PEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES--DLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVME 104 (314)
T ss_dssp ---CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTS--CCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred chhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchH--HHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEee
Confidence 3456888899999999999999975 58999999986532 34679999999999999999999999999999999999
Q ss_pred ccccCcHHHHHH
Q 004953 701 LYIYLFIFQFSI 712 (722)
Q Consensus 701 y~~~G~L~~~l~ 712 (722)
|+++|+|.+++.
T Consensus 105 ~~~~~~L~~~~~ 116 (314)
T 3com_A 105 YCGAGSVSDIIR 116 (314)
T ss_dssp CCTTEEHHHHHH
T ss_pred cCCCCCHHHHHH
Confidence 999999988875
No 314
>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*
Probab=98.98 E-value=5.7e-10 Score=114.52 Aligned_cols=86 Identities=26% Similarity=0.390 Sum_probs=73.9
Q ss_pred cCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCChhcHHHHHHHHHHHHhcCCCcccceEEEEEe-----------
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDE----------- 691 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~----------- 691 (722)
.+|...+.||+|+||.||+|... +|+.||||+++... +.+.+|++++.+++||||+++++++..
T Consensus 11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~ 86 (284)
T 2a19_B 11 MDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN----EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSSKN 86 (284)
T ss_dssp HHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS----GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC-------
T ss_pred cccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc----HHHHHHHHHHHhCCCCCEEEEeeeEeccccCccccccc
Confidence 45777889999999999999975 68999999996542 357789999999999999999999864
Q ss_pred -----CCeEEEEecccccCcHHHHHHH
Q 004953 692 -----EGEQVLPLKLYIYLFIFQFSIK 713 (722)
Q Consensus 692 -----~~~~~Lv~ey~~~G~L~~~l~~ 713 (722)
.+..++||||+++|+|.+++.+
T Consensus 87 ~~~~~~~~~~lv~e~~~~~~L~~~l~~ 113 (284)
T 2a19_B 87 SSRSKTKCLFIQMEFCDKGTLEQWIEK 113 (284)
T ss_dssp --CCEEEEEEEEECCCCSCBHHHHHHH
T ss_pred ccccCcceEEEEEeccCCCCHHHHHhh
Confidence 3457999999999999998864
No 315
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Probab=98.98 E-value=6.5e-10 Score=118.55 Aligned_cols=100 Identities=17% Similarity=0.207 Sum_probs=84.0
Q ss_pred ccccHHHHHHhhcCccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCCChhcHHHHHHHHHHHHhcC-----CCcccce
Q 004953 612 RSFTYGEMALATNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLH-----HRNLVSL 685 (722)
Q Consensus 612 ~~~~~~~~~~~t~~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~-----H~Niv~l 685 (722)
..+++++.....++|...+.||+|+||+||+|.. .+++.||||+++.. ....+.+..|++++.+++ |||||++
T Consensus 23 ~~~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~h~~iv~~ 101 (360)
T 3llt_A 23 VHFSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNI-KKYTRSAKIEADILKKIQNDDINNNNIVKY 101 (360)
T ss_dssp GSCCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC-HHHHHHHHHHHHHHHHTCCCSTTGGGBCCE
T ss_pred eeeeeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccc-hhhhhhhHHHHHHHHHhcccCCCCCCeecc
Confidence 4455555555677899999999999999999996 46889999999642 333457888999999997 9999999
Q ss_pred EEEEEeCCeEEEEecccccCcHHHHHHH
Q 004953 686 VGYCDEEGEQVLPLKLYIYLFIFQFSIK 713 (722)
Q Consensus 686 ~g~~~~~~~~~Lv~ey~~~G~L~~~l~~ 713 (722)
++++...+..++||||+ +|+|.+++.+
T Consensus 102 ~~~~~~~~~~~lv~e~~-~~~L~~~~~~ 128 (360)
T 3llt_A 102 HGKFMYYDHMCLIFEPL-GPSLYEIITR 128 (360)
T ss_dssp EEEEEETTEEEEEECCC-CCBHHHHHHH
T ss_pred cceeeECCeeEEEEcCC-CCCHHHHHHh
Confidence 99999999999999999 9999888765
No 316
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Probab=98.98 E-value=3.5e-10 Score=121.17 Aligned_cols=90 Identities=23% Similarity=0.244 Sum_probs=68.4
Q ss_pred cCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCC---hhcHHHHHHHHHH-HHhcCCCcccceEEEEEeCCeEEEE
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS---LQGEKEFLTEIQF-LSRLHHRNLVSLVGYCDEEGEQVLP 698 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~---~~~~~~f~~E~~~-l~~l~H~Niv~l~g~~~~~~~~~Lv 698 (722)
++|...+.||+|+||+||+++.. ++..||||+++... ....+.+.+|..+ +..++|||||++++++.+.+..++|
T Consensus 38 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~lv 117 (373)
T 2r5t_A 38 SDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFV 117 (373)
T ss_dssp GGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSEEEEE
T ss_pred hheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEEEE
Confidence 45778899999999999999974 58899999996432 1223457778777 5678999999999999999999999
Q ss_pred ecccccCcHHHHHHH
Q 004953 699 LKLYIYLFIFQFSIK 713 (722)
Q Consensus 699 ~ey~~~G~L~~~l~~ 713 (722)
|||+++|+|.+++++
T Consensus 118 ~E~~~gg~L~~~l~~ 132 (373)
T 2r5t_A 118 LDYINGGELFYHLQR 132 (373)
T ss_dssp EECCCSCBHHHHHHH
T ss_pred EeCCCCCcHHHHHHh
Confidence 999999999887765
No 317
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Probab=98.98 E-value=9.1e-10 Score=112.98 Aligned_cols=90 Identities=24% Similarity=0.485 Sum_probs=74.6
Q ss_pred hcCccCCCeeecCCCeeEEEEEeCC----CcEEEEEEccCCC-hhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEE
Q 004953 623 TNNFNSSTQIGQGGYGKVYKGILPD----GTVVAVKRAQEGS-LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVL 697 (722)
Q Consensus 623 t~~f~~~~~iG~G~fG~Vy~g~l~~----g~~vAVK~l~~~~-~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~L 697 (722)
.++|...+.||+|+||+||+|...+ +..||||.++... ....+.|.+|++++.+++||||+++++++.+ +..++
T Consensus 11 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~~ 89 (281)
T 3cc6_A 11 REDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEE-EPTWI 89 (281)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECS-SSCEE
T ss_pred ccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcC-CCCEE
Confidence 4567778899999999999998632 3469999997543 3345679999999999999999999999764 55689
Q ss_pred EecccccCcHHHHHHH
Q 004953 698 PLKLYIYLFIFQFSIK 713 (722)
Q Consensus 698 v~ey~~~G~L~~~l~~ 713 (722)
||||+++|+|.+++.+
T Consensus 90 v~e~~~~~~L~~~l~~ 105 (281)
T 3cc6_A 90 IMELYPYGELGHYLER 105 (281)
T ss_dssp EEECCTTCBHHHHHHH
T ss_pred EEecCCCCCHHHHHHh
Confidence 9999999999888765
No 318
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...
Probab=98.98 E-value=6.9e-10 Score=116.74 Aligned_cols=89 Identities=25% Similarity=0.488 Sum_probs=69.7
Q ss_pred cCccCCCeeecCCCeeEEEEEeC-CCc----EEEEEEccCCC-hhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEE
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILP-DGT----VVAVKRAQEGS-LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVL 697 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~-~g~----~vAVK~l~~~~-~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~L 697 (722)
++|...+.||+|+||+||+|... ++. .||+|.++... ....++|.+|+.++.+++|||||+++++|...+ .++
T Consensus 15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-~~~ 93 (327)
T 3poz_A 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQL 93 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSS-EEE
T ss_pred HHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC-eEE
Confidence 45777889999999999999853 344 46888886432 344568999999999999999999999998754 789
Q ss_pred EecccccCcHHHHHHH
Q 004953 698 PLKLYIYLFIFQFSIK 713 (722)
Q Consensus 698 v~ey~~~G~L~~~l~~ 713 (722)
|+||+++|+|.+++++
T Consensus 94 v~e~~~~g~L~~~l~~ 109 (327)
T 3poz_A 94 ITQLMPFGCLLDYVRE 109 (327)
T ss_dssp EEECCTTCBHHHHHHH
T ss_pred EEEecCCCcHHHHHHh
Confidence 9999999999888765
No 319
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*
Probab=98.98 E-value=6.5e-10 Score=116.88 Aligned_cols=90 Identities=30% Similarity=0.548 Sum_probs=74.5
Q ss_pred cCccCCCeeecCCCeeEEEEEeC-CCcE--EEEEEccCCC-hhcHHHHHHHHHHHHhc-CCCcccceEEEEEeCCeEEEE
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILP-DGTV--VAVKRAQEGS-LQGEKEFLTEIQFLSRL-HHRNLVSLVGYCDEEGEQVLP 698 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~-~g~~--vAVK~l~~~~-~~~~~~f~~E~~~l~~l-~H~Niv~l~g~~~~~~~~~Lv 698 (722)
++|...+.||+|+||.||+|... +|.. ||||.++... ....+.|.+|++++.++ +||||+++++++...+..++|
T Consensus 25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv 104 (327)
T 1fvr_A 25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA 104 (327)
T ss_dssp GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEE
T ss_pred HHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCceEEE
Confidence 45777889999999999999864 4554 4999986532 23345799999999999 999999999999999999999
Q ss_pred ecccccCcHHHHHHH
Q 004953 699 LKLYIYLFIFQFSIK 713 (722)
Q Consensus 699 ~ey~~~G~L~~~l~~ 713 (722)
|||+++|+|.+++++
T Consensus 105 ~e~~~~~~L~~~l~~ 119 (327)
T 1fvr_A 105 IEYAPHGNLLDFLRK 119 (327)
T ss_dssp ECCCTTCBHHHHHHT
T ss_pred EecCCCCCHHHHHHh
Confidence 999999999998864
No 320
>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A
Probab=98.97 E-value=6.3e-10 Score=117.83 Aligned_cols=87 Identities=21% Similarity=0.255 Sum_probs=73.9
Q ss_pred hcCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCChhcHHHHHHHHHHHHhc-CCCcccceEEEEEeCCeEEEEec
Q 004953 623 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRL-HHRNLVSLVGYCDEEGEQVLPLK 700 (722)
Q Consensus 623 t~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l-~H~Niv~l~g~~~~~~~~~Lv~e 700 (722)
.++|...+.||+|+||.||++... +|+.||||.++.... .+.+|++++.++ +|||||++++++.+++..++|||
T Consensus 21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~----~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E 96 (342)
T 2qr7_A 21 TDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKR----DPTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVTE 96 (342)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTC----CCHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEEC
T ss_pred cccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccC----ChHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEEEEe
Confidence 345777889999999999999864 588999999965432 345788899888 89999999999999999999999
Q ss_pred ccccCcHHHHHHH
Q 004953 701 LYIYLFIFQFSIK 713 (722)
Q Consensus 701 y~~~G~L~~~l~~ 713 (722)
|+++|+|.+++.+
T Consensus 97 ~~~gg~L~~~i~~ 109 (342)
T 2qr7_A 97 LMKGGELLDKILR 109 (342)
T ss_dssp CCCSCBHHHHHHT
T ss_pred CCCCCcHHHHHHH
Confidence 9999999887643
No 321
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7
Probab=98.97 E-value=3.8e-10 Score=120.22 Aligned_cols=90 Identities=24% Similarity=0.241 Sum_probs=76.6
Q ss_pred cCccCCCeeecCCCeeEEEEEe----CCCcEEEEEEccCCC----hhcHHHHHHHHHHHHhc-CCCcccceEEEEEeCCe
Q 004953 624 NNFNSSTQIGQGGYGKVYKGIL----PDGTVVAVKRAQEGS----LQGEKEFLTEIQFLSRL-HHRNLVSLVGYCDEEGE 694 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l----~~g~~vAVK~l~~~~----~~~~~~f~~E~~~l~~l-~H~Niv~l~g~~~~~~~ 694 (722)
++|...+.||+|+||+||++.. .+|+.||||+++... ....+.+.+|++++.++ +||||+++++++..++.
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~ 133 (355)
T 1vzo_A 54 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETK 133 (355)
T ss_dssp GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTE
T ss_pred cceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCce
Confidence 4577789999999999999986 368999999986432 12234678899999999 69999999999999999
Q ss_pred EEEEecccccCcHHHHHHH
Q 004953 695 QVLPLKLYIYLFIFQFSIK 713 (722)
Q Consensus 695 ~~Lv~ey~~~G~L~~~l~~ 713 (722)
.++||||+++|+|.+++.+
T Consensus 134 ~~lv~e~~~~~~L~~~l~~ 152 (355)
T 1vzo_A 134 LHLILDYINGGELFTHLSQ 152 (355)
T ss_dssp EEEEECCCCSCBHHHHHHH
T ss_pred EEEEeecCCCCCHHHHHHH
Confidence 9999999999999888764
No 322
>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}
Probab=98.97 E-value=7.2e-10 Score=115.81 Aligned_cols=87 Identities=22% Similarity=0.261 Sum_probs=69.3
Q ss_pred cCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCChhcHHHHHHHHHHHHhcCCCcccceEEEEE------------
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCD------------ 690 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~------------ 690 (722)
++|...+.||+|+||.||+|... +|+.||||++........+++.+|++++.+++|||||++++++.
T Consensus 11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~ 90 (320)
T 2i6l_A 11 SRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVGS 90 (320)
T ss_dssp TTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC----
T ss_pred CceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEecccccccccccccc
Confidence 45777889999999999999975 48999999997665556678999999999999999999999873
Q ss_pred --eCCeEEEEecccccCcHHHHH
Q 004953 691 --EEGEQVLPLKLYIYLFIFQFS 711 (722)
Q Consensus 691 --~~~~~~Lv~ey~~~G~L~~~l 711 (722)
..+..++||||++ |+|.+++
T Consensus 91 ~~~~~~~~lv~e~~~-~~L~~~~ 112 (320)
T 2i6l_A 91 LTELNSVYIVQEYME-TDLANVL 112 (320)
T ss_dssp CCSCSEEEEEEECCS-EEHHHHH
T ss_pred ccccCceeEEeeccC-CCHHHHh
Confidence 3467899999998 6887764
No 323
>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...
Probab=98.97 E-value=1.4e-09 Score=112.64 Aligned_cols=89 Identities=29% Similarity=0.415 Sum_probs=73.7
Q ss_pred cCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCCh--hcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEec
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL--QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPLK 700 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~~--~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~e 700 (722)
++|...+.||+|+||.||+|... +|+.||||+++.... ...+.+.+|++++.+++||||+++++++..++..++|||
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 82 (299)
T 2r3i_A 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFE 82 (299)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred chhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHHHHcCCCCeeeEEEEEecCCceEEEEE
Confidence 46777889999999999999974 689999999865322 223678999999999999999999999999999999999
Q ss_pred ccccCcHHHHHHH
Q 004953 701 LYIYLFIFQFSIK 713 (722)
Q Consensus 701 y~~~G~L~~~l~~ 713 (722)
|++ |+|.+++.+
T Consensus 83 ~~~-~~L~~~~~~ 94 (299)
T 2r3i_A 83 FLH-QDLKKFMDA 94 (299)
T ss_dssp CCS-EEHHHHHHH
T ss_pred ccc-CCHHHHHHh
Confidence 998 688777654
No 324
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=98.96 E-value=4.2e-10 Score=120.66 Aligned_cols=87 Identities=31% Similarity=0.439 Sum_probs=71.9
Q ss_pred ccCCCeeecCCCeeEEEEEeC--CC--cEEEEEEccCCC-hhcHHHHHHHHHHHHhcCCCcccceEEEEEe-CCeEEEEe
Q 004953 626 FNSSTQIGQGGYGKVYKGILP--DG--TVVAVKRAQEGS-LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDE-EGEQVLPL 699 (722)
Q Consensus 626 f~~~~~iG~G~fG~Vy~g~l~--~g--~~vAVK~l~~~~-~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~-~~~~~Lv~ 699 (722)
|...+.||+|+||+||+|... ++ ..||||.++... ....++|.+|+.++.+++|||||+++++|.. ++..++||
T Consensus 91 ~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~lv~ 170 (373)
T 3c1x_A 91 VHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVL 170 (373)
T ss_dssp EEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCEEEE
T ss_pred eecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeEEEE
Confidence 445678999999999999863 22 468999986533 3345679999999999999999999999865 45789999
Q ss_pred cccccCcHHHHHH
Q 004953 700 KLYIYLFIFQFSI 712 (722)
Q Consensus 700 ey~~~G~L~~~l~ 712 (722)
||+++|+|.++++
T Consensus 171 e~~~~g~L~~~l~ 183 (373)
T 3c1x_A 171 PYMKHGDLRNFIR 183 (373)
T ss_dssp ECCTTCBHHHHHH
T ss_pred ECCCCCCHHHHHh
Confidence 9999999988875
No 325
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=98.96 E-value=1.6e-09 Score=114.50 Aligned_cols=87 Identities=21% Similarity=0.374 Sum_probs=75.8
Q ss_pred hcCccCCCeeecCCCeeEEEEEeCCCcEEEEEEccCCChhcHHHHHHHHHHHHh--cCCCcccceEEEEEeCC----eEE
Q 004953 623 TNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSR--LHHRNLVSLVGYCDEEG----EQV 696 (722)
Q Consensus 623 t~~f~~~~~iG~G~fG~Vy~g~l~~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~--l~H~Niv~l~g~~~~~~----~~~ 696 (722)
.++|...+.||+|+||.||+|+. +|+.||||.+.. ...+.+.+|++++.. ++||||+++++++...+ ..+
T Consensus 41 ~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~---~~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~~~~~~~ 116 (342)
T 1b6c_B 41 ARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSS---REERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLW 116 (342)
T ss_dssp HHHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECG---GGHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCSSCCCEE
T ss_pred cccEEEEeeecCCCCcEEEEEEE-cCccEEEEEeCc---hhHHHHHHHHHHHHHhhcCCCcEEEEEeeecccCCccceeE
Confidence 45688889999999999999998 589999999853 345678899999987 79999999999998875 789
Q ss_pred EEecccccCcHHHHHHH
Q 004953 697 LPLKLYIYLFIFQFSIK 713 (722)
Q Consensus 697 Lv~ey~~~G~L~~~l~~ 713 (722)
+||||+++|+|.+++.+
T Consensus 117 lv~e~~~~g~L~~~l~~ 133 (342)
T 1b6c_B 117 LVSDYHEHGSLFDYLNR 133 (342)
T ss_dssp EEECCCTTCBHHHHHHH
T ss_pred EEEeecCCCcHHHHHhc
Confidence 99999999999988754
No 326
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=98.94 E-value=1.5e-09 Score=114.11 Aligned_cols=85 Identities=20% Similarity=0.317 Sum_probs=73.8
Q ss_pred cCccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCCChhcHHHHHHHHHHHHhcC-CCcccceEEEEEe--CCeEEEEe
Q 004953 624 NNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLH-HRNLVSLVGYCDE--EGEQVLPL 699 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~-H~Niv~l~g~~~~--~~~~~Lv~ 699 (722)
++|...+.||+|+||+||+|.. .+++.||||+++.. ..+.+.+|++++.+++ ||||+++++++.. ....++||
T Consensus 36 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~lv~ 112 (330)
T 3nsz_A 36 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPV---KKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVF 112 (330)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC---CHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEEEE
T ss_pred CceEEEEEecccCCeEEEEEEECCCCcEEEEEEeccc---chHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEEEE
Confidence 4577788999999999999985 56899999999743 3467999999999997 9999999999987 56789999
Q ss_pred cccccCcHHHHH
Q 004953 700 KLYIYLFIFQFS 711 (722)
Q Consensus 700 ey~~~G~L~~~l 711 (722)
||+++|+|.+++
T Consensus 113 e~~~~~~l~~~~ 124 (330)
T 3nsz_A 113 EHVNNTDFKQLY 124 (330)
T ss_dssp ECCCCCCHHHHG
T ss_pred eccCchhHHHHH
Confidence 999999997653
No 327
>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A
Probab=98.94 E-value=8.7e-10 Score=116.40 Aligned_cols=84 Identities=21% Similarity=0.292 Sum_probs=68.3
Q ss_pred cCccCCCeeecCCCeeEEEEEeCCCcEEEEEEccCCC--------hhcHHHHHHHHHHHHhcC---------CCcccceE
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGS--------LQGEKEFLTEIQFLSRLH---------HRNLVSLV 686 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~~g~~vAVK~l~~~~--------~~~~~~f~~E~~~l~~l~---------H~Niv~l~ 686 (722)
++|...+.||+|+||+||+|+. +|+.||||+++... ....+.+.+|++++.+++ |||||++.
T Consensus 20 ~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l~ 98 (336)
T 2vuw_A 20 EKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGLN 98 (336)
T ss_dssp HHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCEE
T ss_pred ccchheeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhhc
Confidence 4577788999999999999998 78999999996532 122367999999999886 88888888
Q ss_pred EEEE------------------------------eCCeEEEEecccccCcHH
Q 004953 687 GYCD------------------------------EEGEQVLPLKLYIYLFIF 708 (722)
Q Consensus 687 g~~~------------------------------~~~~~~Lv~ey~~~G~L~ 708 (722)
+.+. ..+..++||||+++|++.
T Consensus 99 ~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll 150 (336)
T 2vuw_A 99 SVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDL 150 (336)
T ss_dssp EEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEET
T ss_pred ceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccH
Confidence 8754 267899999999999653
No 328
>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*
Probab=98.94 E-value=9.4e-10 Score=115.38 Aligned_cols=87 Identities=22% Similarity=0.298 Sum_probs=70.4
Q ss_pred cCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCCh--------hcHHHHHHHHHHHHhcCCCcccceEEEEEeCCe
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL--------QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGE 694 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~~--------~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~ 694 (722)
++|...+.||+|+||.||+|... +++.||||.+..... .....|.+|++++.+++|||||++++++..++
T Consensus 10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~- 88 (322)
T 2ycf_A 10 DEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAED- 88 (322)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESSS-
T ss_pred hceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCCc-
Confidence 45777899999999999999864 588999999864321 11235889999999999999999999987654
Q ss_pred EEEEecccccCcHHHHH
Q 004953 695 QVLPLKLYIYLFIFQFS 711 (722)
Q Consensus 695 ~~Lv~ey~~~G~L~~~l 711 (722)
.++||||+++|+|.+++
T Consensus 89 ~~lv~e~~~~~~L~~~~ 105 (322)
T 2ycf_A 89 YYIVLELMEGGELFDKV 105 (322)
T ss_dssp EEEEEECCTTEETHHHH
T ss_pred eEEEEecCCCCcHHHHH
Confidence 89999999999997764
No 329
>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}
Probab=98.93 E-value=4.6e-10 Score=117.92 Aligned_cols=89 Identities=24% Similarity=0.339 Sum_probs=72.3
Q ss_pred cCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCChhc-HHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEecc
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQG-EKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPLKL 701 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~~~~-~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~ey 701 (722)
++|...+.||+|+||+||+|... +++.||||+++...... ...+.+|++++.+++|||||++++++..++..++||||
T Consensus 2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 81 (324)
T 3mtl_A 2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEY 81 (324)
T ss_dssp CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEecc
Confidence 35777789999999999999975 68999999986543221 12466899999999999999999999999999999999
Q ss_pred cccCcHHHHHHH
Q 004953 702 YIYLFIFQFSIK 713 (722)
Q Consensus 702 ~~~G~L~~~l~~ 713 (722)
++ |+|.+++.+
T Consensus 82 ~~-~~l~~~~~~ 92 (324)
T 3mtl_A 82 LD-KDLKQYLDD 92 (324)
T ss_dssp CS-EEHHHHHHH
T ss_pred cc-cCHHHHHHh
Confidence 98 588776554
No 330
>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7
Probab=98.93 E-value=1.8e-09 Score=113.79 Aligned_cols=87 Identities=21% Similarity=0.302 Sum_probs=72.7
Q ss_pred hcCccCCCeeecCCCeeEEEEEeCCCcEEEEEEccCCChhcHHHHHHHHHHHHhc--CCCcccceEEEEEeC----CeEE
Q 004953 623 TNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRL--HHRNLVSLVGYCDEE----GEQV 696 (722)
Q Consensus 623 t~~f~~~~~iG~G~fG~Vy~g~l~~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l--~H~Niv~l~g~~~~~----~~~~ 696 (722)
.++|...+.||+|+||.||+|+.. |+.||||++... ....+..|.+++... +|||||++++++... +..+
T Consensus 36 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~---~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~ 111 (337)
T 3mdy_A 36 AKQIQMVKQIGKGRYGEVWMGKWR-GEKVAVKVFFTT---EEASWFRETEIYQTVLMRHENILGFIAADIKGTGSWTQLY 111 (337)
T ss_dssp HHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEEEGG---GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGGCEEE
T ss_pred ccceEEEeEeecCCCeEEEEEEEC-CceEEEEEEecc---ccchhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCCCceE
Confidence 356888899999999999999984 899999998532 334566677776655 999999999999887 7899
Q ss_pred EEecccccCcHHHHHHH
Q 004953 697 LPLKLYIYLFIFQFSIK 713 (722)
Q Consensus 697 Lv~ey~~~G~L~~~l~~ 713 (722)
+||||+++|+|.+++++
T Consensus 112 lv~e~~~~g~L~~~l~~ 128 (337)
T 3mdy_A 112 LITDYHENGSLYDYLKS 128 (337)
T ss_dssp EEECCCTTCBHHHHHHH
T ss_pred EEEeccCCCcHHHHhhc
Confidence 99999999999888754
No 331
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7
Probab=98.93 E-value=1.5e-09 Score=112.16 Aligned_cols=88 Identities=25% Similarity=0.290 Sum_probs=72.2
Q ss_pred ccCCCeeecCCCeeEEEEEeC-CC---cEEEEEEccCCCh-hcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeE-EEEe
Q 004953 626 FNSSTQIGQGGYGKVYKGILP-DG---TVVAVKRAQEGSL-QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQ-VLPL 699 (722)
Q Consensus 626 f~~~~~iG~G~fG~Vy~g~l~-~g---~~vAVK~l~~~~~-~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~-~Lv~ 699 (722)
|...+.||+|+||+||+|... ++ ..||||.+..... ...+.|.+|++++.+++|||||++++++.+.+.. ++|+
T Consensus 23 ~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v~ 102 (298)
T 3pls_A 23 THSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHVLL 102 (298)
T ss_dssp EEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEEE
T ss_pred EccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcEEEE
Confidence 445578999999999999853 22 3799999875433 3446799999999999999999999999876554 9999
Q ss_pred cccccCcHHHHHHH
Q 004953 700 KLYIYLFIFQFSIK 713 (722)
Q Consensus 700 ey~~~G~L~~~l~~ 713 (722)
||+.+|+|.+++++
T Consensus 103 e~~~~~~L~~~~~~ 116 (298)
T 3pls_A 103 PYMCHGDLLQFIRS 116 (298)
T ss_dssp CCCTTCBHHHHHHC
T ss_pred ecccCCCHHHHHhc
Confidence 99999999888753
No 332
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Probab=98.93 E-value=1.7e-09 Score=114.54 Aligned_cols=89 Identities=19% Similarity=0.270 Sum_probs=76.0
Q ss_pred cCccCCCeeecCCCeeEEEEEeCCCcEEEEEEccCCC--hhcHHHHHHHHHHHHhcCC--CcccceEEEEEeCCeEEEEe
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGS--LQGEKEFLTEIQFLSRLHH--RNLVSLVGYCDEEGEQVLPL 699 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~~g~~vAVK~l~~~~--~~~~~~f~~E~~~l~~l~H--~Niv~l~g~~~~~~~~~Lv~ 699 (722)
+.|...+.||+|+||.||++...+++.||||++.... ....+.|.+|++++.+++| +|||++++++..++..++||
T Consensus 9 ~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~ 88 (343)
T 3dbq_A 9 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVM 88 (343)
T ss_dssp CEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred CEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEEEE
Confidence 4577778999999999999998889999999986432 3334679999999999987 99999999999999999999
Q ss_pred cccccCcHHHHHHH
Q 004953 700 KLYIYLFIFQFSIK 713 (722)
Q Consensus 700 ey~~~G~L~~~l~~ 713 (722)
| +.+|+|.+++.+
T Consensus 89 e-~~~~~L~~~l~~ 101 (343)
T 3dbq_A 89 E-CGNIDLNSWLKK 101 (343)
T ss_dssp C-CCSEEHHHHHHH
T ss_pred e-CCCCCHHHHHHh
Confidence 9 568899887654
No 333
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...
Probab=98.93 E-value=1.2e-09 Score=113.01 Aligned_cols=89 Identities=29% Similarity=0.368 Sum_probs=72.8
Q ss_pred CccCCCeeecCCCeeEEEEEeCC----CcEEEEEEccCCCh-hcHHHHHHHHHHHHhcCCCcccceEEEEEe-CCeEEEE
Q 004953 625 NFNSSTQIGQGGYGKVYKGILPD----GTVVAVKRAQEGSL-QGEKEFLTEIQFLSRLHHRNLVSLVGYCDE-EGEQVLP 698 (722)
Q Consensus 625 ~f~~~~~iG~G~fG~Vy~g~l~~----g~~vAVK~l~~~~~-~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~-~~~~~Lv 698 (722)
.|...+.||+|+||+||+|...+ +..||||.++.... ...+.|.+|++++.+++|||||+++++|.. ++..++|
T Consensus 26 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v 105 (298)
T 3f66_A 26 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVV 105 (298)
T ss_dssp EEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEE
T ss_pred ehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCceEEE
Confidence 46667899999999999998643 23689999875433 344679999999999999999999999765 5678999
Q ss_pred ecccccCcHHHHHHH
Q 004953 699 LKLYIYLFIFQFSIK 713 (722)
Q Consensus 699 ~ey~~~G~L~~~l~~ 713 (722)
|||+++|+|.+++++
T Consensus 106 ~e~~~~~~L~~~l~~ 120 (298)
T 3f66_A 106 LPYMKHGDLRNFIRN 120 (298)
T ss_dssp EECCTTCBHHHHHHC
T ss_pred EeCCCCCCHHHHHHh
Confidence 999999999888753
No 334
>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
Probab=98.93 E-value=1.3e-09 Score=114.79 Aligned_cols=87 Identities=18% Similarity=0.172 Sum_probs=75.0
Q ss_pred cCccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCCChhcHHHHHHHHHHHHhc-CCCcccceEEEEEeCCeEEEEecc
Q 004953 624 NNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRL-HHRNLVSLVGYCDEEGEQVLPLKL 701 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l-~H~Niv~l~g~~~~~~~~~Lv~ey 701 (722)
++|...+.||+|+||+||+|.. .+|+.||||.+..... .+.+.+|++++.++ +||||+++++++..++..++||||
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e~ 86 (330)
T 2izr_A 9 PNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSR--APQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLEL 86 (330)
T ss_dssp TTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCS--SCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEEEEC
T ss_pred CCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccc--hHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEEEEe
Confidence 4677888999999999999995 5789999999865422 23688999999999 999999999999999999999999
Q ss_pred cccCcHHHHHHH
Q 004953 702 YIYLFIFQFSIK 713 (722)
Q Consensus 702 ~~~G~L~~~l~~ 713 (722)
+ +|+|.+++.+
T Consensus 87 ~-~~~L~~~~~~ 97 (330)
T 2izr_A 87 L-GPSLEDLFDL 97 (330)
T ss_dssp C-CCBHHHHHHH
T ss_pred C-CCCHHHHHHH
Confidence 9 9999888764
No 335
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Probab=98.93 E-value=8.4e-10 Score=121.91 Aligned_cols=84 Identities=19% Similarity=0.262 Sum_probs=70.1
Q ss_pred hcCccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCC--ChhcHHHHHHHHHHHHhcCCCcccceEEEEEeC------C
Q 004953 623 TNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEG--SLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEE------G 693 (722)
Q Consensus 623 t~~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~--~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~------~ 693 (722)
.++|...+.||+|+||+||+|.. .+|+.||||++... .....+.+.+|+.+|.+++|||||++++++... +
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~ 140 (464)
T 3ttj_A 61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQ 140 (464)
T ss_dssp ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCC
T ss_pred cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCC
Confidence 45688889999999999999985 46889999999653 233346789999999999999999999999754 3
Q ss_pred eEEEEecccccCc
Q 004953 694 EQVLPLKLYIYLF 706 (722)
Q Consensus 694 ~~~Lv~ey~~~G~ 706 (722)
..++|||||+++.
T Consensus 141 ~~~lv~E~~~~~l 153 (464)
T 3ttj_A 141 DVYLVMELMDANL 153 (464)
T ss_dssp EEEEEEECCSEEH
T ss_pred eEEEEEeCCCCCH
Confidence 5799999998763
No 336
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Probab=98.92 E-value=1.3e-09 Score=120.40 Aligned_cols=87 Identities=25% Similarity=0.336 Sum_probs=63.3
Q ss_pred cCccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCC--ChhcHHHHHHHHHHHHhcCCCcccceEEEEEeC-----CeE
Q 004953 624 NNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEG--SLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEE-----GEQ 695 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~--~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~-----~~~ 695 (722)
++|...+.||+|+||+||+|.. .+|+.||||++... .....+.+.+|+++|.+++|||||++++++... +..
T Consensus 53 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~ 132 (458)
T 3rp9_A 53 DRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDEL 132 (458)
T ss_dssp TTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCCE
T ss_pred CCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCceE
Confidence 5688889999999999999985 46899999998653 223446799999999999999999999999543 568
Q ss_pred EEEecccccCcHHHHH
Q 004953 696 VLPLKLYIYLFIFQFS 711 (722)
Q Consensus 696 ~Lv~ey~~~G~L~~~l 711 (722)
++||||+. |+|.+++
T Consensus 133 ~lv~e~~~-~~L~~~~ 147 (458)
T 3rp9_A 133 YVVLEIAD-SDFKKLF 147 (458)
T ss_dssp EEEECCCS-EEHHHHH
T ss_pred EEEEeccc-cchhhhc
Confidence 99999985 6776554
No 337
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.92 E-value=5.7e-08 Score=104.86 Aligned_cols=281 Identities=13% Similarity=0.143 Sum_probs=154.7
Q ss_pred eeEEEcCCCCCccccCccccCCCCCCEEECCCCC---CccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEE
Q 004953 84 LRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNK---ISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQ 160 (722)
Q Consensus 84 l~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 160 (722)
|+.+.+.. .++.....+|.++++|+.+.+..|. ++.+-..+|.++.+|+.+.+..+ ++......|..+.+|+.+.
T Consensus 66 L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~ 143 (394)
T 4gt6_A 66 LTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVT 143 (394)
T ss_dssp CCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEE
T ss_pred CEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccc
Confidence 66666654 3555556667777777777776653 55445566777777777776544 4435556677777777777
Q ss_pred cccCCCCCCCchhhcCcCCCCEEECCCccccCCCCcCCCCCCccceeecccCCCCCCCCccCCCCCCCcEEECcCCCCCC
Q 004953 161 IDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEG 240 (722)
Q Consensus 161 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~ 240 (722)
+..+ +..+....|.++.+|+.+.+..+ ++......|. ..+|+.+.+..+-. ......|..+.+++......+....
T Consensus 144 lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~-~i~~~af~~c~~l~~~~~~~~~~~~ 219 (394)
T 4gt6_A 144 IPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVT-RIGTNAFSECFALSTITSDSESYPA 219 (394)
T ss_dssp CCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCC-EECTTTTTTCTTCCEEEECCSSSCB
T ss_pred ccce-eeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCccc-ccccchhhhccccceeccccccccc
Confidence 7643 33345566777777777777654 3323333443 35677777665432 2445566677777766655443321
Q ss_pred CCcchhc--------------cCCCCCcEEEccCCCCccCC-CCCCCCCCccEEEccCCCCCccCCCcccc--CCcCEEE
Q 004953 241 TTIPASY--------------SNMSKLLKLSLRNCSLQGPM-PDLSRIPNLGYLDLSSNQLNGSIPPGRLS--LNITTIK 303 (722)
Q Consensus 241 ~~~~~~~--------------~~l~~L~~L~L~~N~l~~~~-~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~--~~L~~L~ 303 (722)
....+ .....+..+.+.. .++... ..|..+..|+.+.+..+.. .+....+. .+|+.+.
T Consensus 220 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~--~I~~~aF~~c~~L~~i~ 294 (394)
T 4gt6_A 220 --IDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVV--SIGTGAFMNCPALQDIE 294 (394)
T ss_dssp --SSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCC--EECTTTTTTCTTCCEEE
T ss_pred --ccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccc--eecCccccccccccccc
Confidence 11000 0111122222211 111111 1355666677777655433 34443333 4677777
Q ss_pred ccCCcCcccCCccCCCCCCCCEEeCCCCcCcccCChhhhhhccCCCCcccEEEccCCcCCCCCC-CC-CCCCceEEEccC
Q 004953 304 LSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISG-SF-NIPPNVTVRLRG 381 (722)
Q Consensus 304 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~ls~N~l~~~~~-~~-~~~~l~~l~l~~ 381 (722)
+. +.++.....+|.++.+|+.++|..+ ++..-...|. .+.+|+.+.+..+ ++.+.. .+ ...+|+.+.+.+
T Consensus 295 l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~-----~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 295 FS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFA-----GCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp CC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-----TCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESS
T ss_pred CC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhh-----CCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECC
Confidence 74 4455555666777777777777654 4422222333 2356667777543 555543 23 556777777766
Q ss_pred Cc
Q 004953 382 NP 383 (722)
Q Consensus 382 N~ 383 (722)
|.
T Consensus 367 ~~ 368 (394)
T 4gt6_A 367 SR 368 (394)
T ss_dssp CH
T ss_pred ce
Confidence 64
No 338
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=98.92 E-value=2.9e-09 Score=112.55 Aligned_cols=90 Identities=23% Similarity=0.367 Sum_probs=73.8
Q ss_pred hcCccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCCC-hhcHHHHHHHHHH-HHhcCCCcccceEEEEEeCCeEEEEe
Q 004953 623 TNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGS-LQGEKEFLTEIQF-LSRLHHRNLVSLVGYCDEEGEQVLPL 699 (722)
Q Consensus 623 t~~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~~-~~~~~~f~~E~~~-l~~l~H~Niv~l~g~~~~~~~~~Lv~ 699 (722)
.++|...+.||+|+||+||+|.. .+|+.||||+++... .....++..|+.+ +..++|||||++++++..++..++||
T Consensus 50 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~~~~~~~~~~~~~lv~ 129 (340)
T 3an0_A 50 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICM 129 (340)
T ss_dssp SSCEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCCCCHHHHHHHHHHHHHHTTCCCTTTCCEEEEEECSSCEEEEE
T ss_pred hhheeEeeEecccCCEEEEEEEEcCCCCEEEEEEeccccCcHHHHHHHHHHHHHHhhcCCCcEEEEeeEEEeCCcEEEEH
Confidence 45677778999999999999995 578999999997543 2334556667666 77889999999999999999999999
Q ss_pred cccccCcHHHHHHH
Q 004953 700 KLYIYLFIFQFSIK 713 (722)
Q Consensus 700 ey~~~G~L~~~l~~ 713 (722)
||+++ +|.+++.+
T Consensus 130 e~~~~-~L~~~l~~ 142 (340)
T 3an0_A 130 ELMDT-SLDKFYKQ 142 (340)
T ss_dssp CCCSE-EHHHHHHH
T ss_pred HHhhC-cHHHHHHH
Confidence 99985 88777664
No 339
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Probab=98.91 E-value=4.7e-10 Score=118.50 Aligned_cols=90 Identities=20% Similarity=0.311 Sum_probs=75.7
Q ss_pred hcCccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCCChh--------cHHHHHHHHHHHHhcCCCcccceEEEEEeCC
Q 004953 623 TNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQ--------GEKEFLTEIQFLSRLHHRNLVSLVGYCDEEG 693 (722)
Q Consensus 623 t~~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~~~~--------~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~ 693 (722)
.++|...+.||+|+||.||+|.. .+++.||||+++..... ..+.|.+|++++.+++|||||++++++.+.+
T Consensus 23 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~~ 102 (335)
T 3dls_A 23 SQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQG 102 (335)
T ss_dssp HHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECSS
T ss_pred ccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeCC
Confidence 35688889999999999999985 56889999998654211 2235788999999999999999999999999
Q ss_pred eEEEEecccccC-cHHHHHH
Q 004953 694 EQVLPLKLYIYL-FIFQFSI 712 (722)
Q Consensus 694 ~~~Lv~ey~~~G-~L~~~l~ 712 (722)
..++||||+..| +|.+++.
T Consensus 103 ~~~lv~e~~~~g~~l~~~~~ 122 (335)
T 3dls_A 103 FFQLVMEKHGSGLDLFAFID 122 (335)
T ss_dssp EEEEEEECCTTSCBHHHHHH
T ss_pred EEEEEEEeCCCCccHHHHHH
Confidence 999999999887 8877654
No 340
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.91 E-value=1.2e-09 Score=126.92 Aligned_cols=88 Identities=16% Similarity=0.281 Sum_probs=73.1
Q ss_pred cCccCCCeeecCCCeeEEEEEeC--CCcEEEEEEccCCC-hhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCe-----E
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILP--DGTVVAVKRAQEGS-LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGE-----Q 695 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~--~g~~vAVK~l~~~~-~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~-----~ 695 (722)
++|...+.||+|+||.||+|... +|+.||||++.... ....+.|.+|++++.+++|||||++++++...+. .
T Consensus 80 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~~ 159 (681)
T 2pzi_A 80 GQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPVG 159 (681)
T ss_dssp TTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEEE
T ss_pred CceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCcee
Confidence 56888899999999999999974 58999999986533 3344579999999999999999999999987655 7
Q ss_pred EEEecccccCcHHHHH
Q 004953 696 VLPLKLYIYLFIFQFS 711 (722)
Q Consensus 696 ~Lv~ey~~~G~L~~~l 711 (722)
++|||||++|+|.+++
T Consensus 160 ~lv~E~~~g~~L~~~~ 175 (681)
T 2pzi_A 160 YIVMEYVGGQSLKRSK 175 (681)
T ss_dssp EEEEECCCCEECC---
T ss_pred EEEEEeCCCCcHHHHH
Confidence 9999999999986543
No 341
>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}
Probab=98.91 E-value=2.3e-09 Score=115.46 Aligned_cols=89 Identities=16% Similarity=0.227 Sum_probs=68.8
Q ss_pred HHhhcCccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCCChhcHHHHHHHHHHHHhcCCCcccceEEEEEeC------
Q 004953 620 ALATNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEE------ 692 (722)
Q Consensus 620 ~~~t~~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~------ 692 (722)
....++|...+.||+|+||+||+|.. .+|+.||||++..... .+.+|+++|++++|||||++++++...
T Consensus 3 ~~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~----~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~ 78 (383)
T 3eb0_A 3 ETSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPR----YKNRELDIMKVLDHVNIIKLVDYFYTTGDEEPK 78 (383)
T ss_dssp ---CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTT----SCCHHHHHHTTCCCTTBCCEEEEEEEC------
T ss_pred ccccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcc----hHHHHHHHHHHcCCCCccchhheeeecCccccc
Confidence 34556788889999999999999985 5689999999864322 234799999999999999999998543
Q ss_pred --------------------------------CeEEEEecccccCcHHHHHHH
Q 004953 693 --------------------------------GEQVLPLKLYIYLFIFQFSIK 713 (722)
Q Consensus 693 --------------------------------~~~~Lv~ey~~~G~L~~~l~~ 713 (722)
...++||||++ |+|.+++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~ 130 (383)
T 3eb0_A 79 PPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKS 130 (383)
T ss_dssp -------------------------------CCEEEEEECCCS-EEHHHHHHH
T ss_pred ccccccccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHH
Confidence 34889999999 576655543
No 342
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=98.90 E-value=2.7e-09 Score=115.12 Aligned_cols=88 Identities=19% Similarity=0.268 Sum_probs=75.5
Q ss_pred CccCCCeeecCCCeeEEEEEeCCCcEEEEEEccCC--ChhcHHHHHHHHHHHHhcC--CCcccceEEEEEeCCeEEEEec
Q 004953 625 NFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEG--SLQGEKEFLTEIQFLSRLH--HRNLVSLVGYCDEEGEQVLPLK 700 (722)
Q Consensus 625 ~f~~~~~iG~G~fG~Vy~g~l~~g~~vAVK~l~~~--~~~~~~~f~~E~~~l~~l~--H~Niv~l~g~~~~~~~~~Lv~e 700 (722)
.|...+.||+|+||+||++...+++.||||++... .....+.|.+|+++|.+++ |||||++++++..++..++|||
T Consensus 57 ~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~E 136 (390)
T 2zmd_A 57 IYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVME 136 (390)
T ss_dssp EEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEEE
T ss_pred ceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEEEe
Confidence 47778899999999999999878999999998643 2334467999999999996 5999999999999999999999
Q ss_pred ccccCcHHHHHHH
Q 004953 701 LYIYLFIFQFSIK 713 (722)
Q Consensus 701 y~~~G~L~~~l~~ 713 (722)
+.+|+|.+++.+
T Consensus 137 -~~~~~L~~~l~~ 148 (390)
T 2zmd_A 137 -CGNIDLNSWLKK 148 (390)
T ss_dssp -CCSEEHHHHHHH
T ss_pred -cCCCCHHHHHHh
Confidence 578899887654
No 343
>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}
Probab=98.90 E-value=2.2e-09 Score=111.45 Aligned_cols=87 Identities=24% Similarity=0.340 Sum_probs=70.7
Q ss_pred cCccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCCC----hhcHHHHHHHHHHHHhcCCCcccceEEEEEe--CCeEE
Q 004953 624 NNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGS----LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDE--EGEQV 696 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~~----~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~--~~~~~ 696 (722)
++|...+.||+|+||.||++.. .++..||||.++... ....+.|.+|++++.+++||||+++++++.. .+..+
T Consensus 5 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~ 84 (305)
T 2wtk_C 5 GKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKMY 84 (305)
T ss_dssp CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CEE
T ss_pred cceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeEE
Confidence 5788899999999999999996 468899999986432 1234679999999999999999999999853 45789
Q ss_pred EEecccccCcHHHHH
Q 004953 697 LPLKLYIYLFIFQFS 711 (722)
Q Consensus 697 Lv~ey~~~G~L~~~l 711 (722)
+||||+++| |.+++
T Consensus 85 lv~e~~~~~-l~~~~ 98 (305)
T 2wtk_C 85 MVMEYCVCG-MQEML 98 (305)
T ss_dssp EEEECCSEE-HHHHH
T ss_pred EEehhccCC-HHHHH
Confidence 999999987 44443
No 344
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}
Probab=98.90 E-value=1.8e-09 Score=113.69 Aligned_cols=90 Identities=21% Similarity=0.327 Sum_probs=75.5
Q ss_pred hcCccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCCChhcHHHHHHHHHHHHhcC-CCcccceEEEEEe--------C
Q 004953 623 TNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLH-HRNLVSLVGYCDE--------E 692 (722)
Q Consensus 623 t~~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~-H~Niv~l~g~~~~--------~ 692 (722)
..+|...+.||+|+||.||+|.. .+|+.||||++........+.+.+|+.++.+++ |||||++++++.. .
T Consensus 27 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~ 106 (337)
T 3ll6_A 27 ELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQ 106 (337)
T ss_dssp TEEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTSS
T ss_pred CceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhccccccccccccccCC
Confidence 34677789999999999999996 468999999986655555678999999999996 9999999999953 3
Q ss_pred CeEEEEecccccCcHHHHHHH
Q 004953 693 GEQVLPLKLYIYLFIFQFSIK 713 (722)
Q Consensus 693 ~~~~Lv~ey~~~G~L~~~l~~ 713 (722)
...++|+||++ |+|.+++++
T Consensus 107 ~~~~lv~e~~~-g~L~~~l~~ 126 (337)
T 3ll6_A 107 AEFLLLTELCK-GQLVEFLKK 126 (337)
T ss_dssp EEEEEEEECCS-EEHHHHHHH
T ss_pred ceEEEEEEecC-CCHHHHHHH
Confidence 45799999996 789888765
No 345
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*
Probab=98.89 E-value=1.9e-09 Score=113.44 Aligned_cols=89 Identities=21% Similarity=0.243 Sum_probs=73.5
Q ss_pred hcCccCC-CeeecCCCeeEEEEEeC-CCcEEEEEEccCCC--hhcHHHHHHHHHHHHhc-CCCcccceEEEEEeCCeEEE
Q 004953 623 TNNFNSS-TQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS--LQGEKEFLTEIQFLSRL-HHRNLVSLVGYCDEEGEQVL 697 (722)
Q Consensus 623 t~~f~~~-~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~--~~~~~~f~~E~~~l~~l-~H~Niv~l~g~~~~~~~~~L 697 (722)
.+.|... +.||+|+||.||+|... +|+.||||+++... .....++.+|+.++.++ +||||+++++++...+..++
T Consensus 27 ~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~~~~~l 106 (327)
T 3lm5_A 27 NNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYENTSEIIL 106 (327)
T ss_dssp HHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred hhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEEEeCCeEEE
Confidence 3445444 78999999999999864 58999999986432 23356899999999999 56999999999999999999
Q ss_pred EecccccCcHHHHH
Q 004953 698 PLKLYIYLFIFQFS 711 (722)
Q Consensus 698 v~ey~~~G~L~~~l 711 (722)
||||+++|+|.+++
T Consensus 107 v~e~~~~~~L~~~~ 120 (327)
T 3lm5_A 107 ILEYAAGGEIFSLC 120 (327)
T ss_dssp EEECCTTEEGGGGG
T ss_pred EEEecCCCcHHHHH
Confidence 99999999886553
No 346
>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*
Probab=98.89 E-value=1.9e-09 Score=118.07 Aligned_cols=89 Identities=25% Similarity=0.302 Sum_probs=74.2
Q ss_pred hcCccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCC--ChhcHHHHHHHHHHHHhcCCCcccceEEEEEeC-----Ce
Q 004953 623 TNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEG--SLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEE-----GE 694 (722)
Q Consensus 623 t~~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~--~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~-----~~ 694 (722)
.++|...+.||+|+||.||+|.. .+|+.||||+++.. .....+.+.+|+++|.+++|||||++++++... +.
T Consensus 25 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~ 104 (432)
T 3n9x_A 25 PDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDE 104 (432)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred cCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCe
Confidence 35688889999999999999986 45889999999653 223446799999999999999999999999775 57
Q ss_pred EEEEecccccCcHHHHHH
Q 004953 695 QVLPLKLYIYLFIFQFSI 712 (722)
Q Consensus 695 ~~Lv~ey~~~G~L~~~l~ 712 (722)
.++|||||+ |+|.++++
T Consensus 105 ~~lv~e~~~-~~L~~~~~ 121 (432)
T 3n9x_A 105 LYIVLEIAD-SDLKKLFK 121 (432)
T ss_dssp EEEEEECCS-EEHHHHHH
T ss_pred EEEEEecCC-cCHHHHHh
Confidence 899999997 58866654
No 347
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*
Probab=98.89 E-value=1.6e-09 Score=111.68 Aligned_cols=90 Identities=23% Similarity=0.326 Sum_probs=67.4
Q ss_pred cCccCCCeeecCCCeeEEEEEeC--CCc--EEEEEEccCCC---hhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEE
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILP--DGT--VVAVKRAQEGS---LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQV 696 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~--~g~--~vAVK~l~~~~---~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~ 696 (722)
++|...+.||+|+||+||+|... ++. .||||+++... ....+.|.+|++++.+++||||+++++++..++ .+
T Consensus 18 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-~~ 96 (291)
T 1u46_A 18 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPP-MK 96 (291)
T ss_dssp GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-CE
T ss_pred hHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCC-ce
Confidence 45777889999999999999853 333 68999986532 233467999999999999999999999997654 78
Q ss_pred EEecccccCcHHHHHHHH
Q 004953 697 LPLKLYIYLFIFQFSIKL 714 (722)
Q Consensus 697 Lv~ey~~~G~L~~~l~~~ 714 (722)
+|+||+++|+|.+++++.
T Consensus 97 ~v~e~~~~~~L~~~l~~~ 114 (291)
T 1u46_A 97 MVTELAPLGSLLDRLRKH 114 (291)
T ss_dssp EEEECCTTCBHHHHHHHH
T ss_pred eeEecccCCCHHHHHHhc
Confidence 999999999999887653
No 348
>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7
Probab=98.89 E-value=1.5e-09 Score=115.05 Aligned_cols=88 Identities=20% Similarity=0.342 Sum_probs=68.8
Q ss_pred hcCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCChhc-----HHHHHHHHHHHHhcCCCcccceEEEEEeCCeEE
Q 004953 623 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQG-----EKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQV 696 (722)
Q Consensus 623 t~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~~~~-----~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~ 696 (722)
.++|...+.||+|+||.||+|... +|+.||||+++...... .+.+.+|++++.+++|||||++++++...+..+
T Consensus 9 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 88 (346)
T 1ua2_A 9 AKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNIS 88 (346)
T ss_dssp ----CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCE
T ss_pred hcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCCceE
Confidence 456888899999999999999964 58999999986432211 246889999999999999999999999999999
Q ss_pred EEecccccCcHHHHH
Q 004953 697 LPLKLYIYLFIFQFS 711 (722)
Q Consensus 697 Lv~ey~~~G~L~~~l 711 (722)
+||||+++ +|.+++
T Consensus 89 lv~e~~~~-~l~~~~ 102 (346)
T 1ua2_A 89 LVFDFMET-DLEVII 102 (346)
T ss_dssp EEEECCSE-EHHHHH
T ss_pred EEEEcCCC-CHHHHH
Confidence 99999986 665554
No 349
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...
Probab=98.89 E-value=1.9e-09 Score=111.10 Aligned_cols=86 Identities=23% Similarity=0.357 Sum_probs=72.0
Q ss_pred hcCccCCCeeecCCCeeEEEEEeCCCcEEEEEEccCCC--hhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEec
Q 004953 623 TNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGS--LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPLK 700 (722)
Q Consensus 623 t~~f~~~~~iG~G~fG~Vy~g~l~~g~~vAVK~l~~~~--~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~e 700 (722)
.++|...+.||+|+||+||+|... ..||||+++... ....+.|.+|++++.+++||||+++++++ ..+..++|||
T Consensus 23 ~~~y~~~~~lG~G~~g~Vy~~~~~--~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-~~~~~~lv~e 99 (289)
T 3og7_A 23 DGQITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TAPQLAIVTQ 99 (289)
T ss_dssp TTSCEEEEEEEECSSEEEEEEESS--SEEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEE-CSSSCEEEEE
T ss_pred ccceeeeeEecCCCCeEEEEEEEc--CceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeec-cCCccEEEEE
Confidence 456788899999999999999864 359999986543 33446799999999999999999999976 4566899999
Q ss_pred ccccCcHHHHH
Q 004953 701 LYIYLFIFQFS 711 (722)
Q Consensus 701 y~~~G~L~~~l 711 (722)
|+++|+|.+++
T Consensus 100 ~~~~~~L~~~l 110 (289)
T 3og7_A 100 WCEGSSLYHHL 110 (289)
T ss_dssp CCCEEEHHHHH
T ss_pred ecCCCcHHHHH
Confidence 99999998776
No 350
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=98.88 E-value=3e-09 Score=122.47 Aligned_cols=91 Identities=22% Similarity=0.337 Sum_probs=75.3
Q ss_pred hhcCccCCCeeecCCCeeEEEEEeCC----CcEEEEEEccCCCh-hcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEE
Q 004953 622 ATNNFNSSTQIGQGGYGKVYKGILPD----GTVVAVKRAQEGSL-QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQV 696 (722)
Q Consensus 622 ~t~~f~~~~~iG~G~fG~Vy~g~l~~----g~~vAVK~l~~~~~-~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~ 696 (722)
..++|...+.||+|+||.||+|.... +..||||+++.... ...+.|.+|+.++.+++|||||+++|++. ++..+
T Consensus 388 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~~~ 466 (656)
T 2j0j_A 388 QRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVW 466 (656)
T ss_dssp CGGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCE
T ss_pred ccccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-cCceE
Confidence 34567777899999999999998632 46799999875432 33467999999999999999999999984 56789
Q ss_pred EEecccccCcHHHHHHH
Q 004953 697 LPLKLYIYLFIFQFSIK 713 (722)
Q Consensus 697 Lv~ey~~~G~L~~~l~~ 713 (722)
+||||+++|+|.+++++
T Consensus 467 lv~E~~~~g~L~~~l~~ 483 (656)
T 2j0j_A 467 IIMELCTLGELRSFLQV 483 (656)
T ss_dssp EEEECCTTCBHHHHHHH
T ss_pred EEEEcCCCCcHHHHHHh
Confidence 99999999999988764
No 351
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=98.88 E-value=7.6e-10 Score=118.93 Aligned_cols=90 Identities=10% Similarity=0.075 Sum_probs=71.7
Q ss_pred hcCccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCC---ChhcHHHHHHHH---HHHHhcCCCcccceE-------EE
Q 004953 623 TNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEG---SLQGEKEFLTEI---QFLSRLHHRNLVSLV-------GY 688 (722)
Q Consensus 623 t~~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~---~~~~~~~f~~E~---~~l~~l~H~Niv~l~-------g~ 688 (722)
.++|...+.||+|+||+||+|.. .+|+.||||++... .....+.|.+|+ +.+++++|||||+++ ++
T Consensus 72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~ 151 (377)
T 3byv_A 72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL 151 (377)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEE
T ss_pred CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhh
Confidence 45677788999999999999995 56999999998632 233456799999 566667899999998 66
Q ss_pred EEeCCe-----------------EEEEecccccCcHHHHHHH
Q 004953 689 CDEEGE-----------------QVLPLKLYIYLFIFQFSIK 713 (722)
Q Consensus 689 ~~~~~~-----------------~~Lv~ey~~~G~L~~~l~~ 713 (722)
+..++. .++||||+ +|+|.+++.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~ 192 (377)
T 3byv_A 152 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEV 192 (377)
T ss_dssp EECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHH
T ss_pred hhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHh
Confidence 665532 88999999 6899988875
No 352
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A
Probab=98.88 E-value=4.3e-09 Score=108.26 Aligned_cols=90 Identities=22% Similarity=0.294 Sum_probs=70.5
Q ss_pred hcCccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCCCh-hcHHH-HHHHHHHHHhcCCCcccceEEEEEeCCeEEEEe
Q 004953 623 TNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSL-QGEKE-FLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPL 699 (722)
Q Consensus 623 t~~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~~~-~~~~~-f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~ 699 (722)
.++|...+.||+|+||+||++.. .+|+.||||+++.... ....+ +..+...+..++||||+++++++..++..++||
T Consensus 6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~lv~ 85 (290)
T 3fme_A 6 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICM 85 (290)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEEEE
T ss_pred HHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEEEE
Confidence 35677788999999999999996 5689999999975422 22233 445555688889999999999999999999999
Q ss_pred cccccCcHHHHHHH
Q 004953 700 KLYIYLFIFQFSIK 713 (722)
Q Consensus 700 ey~~~G~L~~~l~~ 713 (722)
||++ |+|.+++.+
T Consensus 86 e~~~-~~l~~~l~~ 98 (290)
T 3fme_A 86 ELMD-TSLDKFYKQ 98 (290)
T ss_dssp ECCS-EEHHHHHHH
T ss_pred ehhc-cchHHHHHH
Confidence 9998 577666554
No 353
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*
Probab=98.87 E-value=1e-09 Score=115.25 Aligned_cols=89 Identities=20% Similarity=0.333 Sum_probs=71.7
Q ss_pred cCccCCCeeecCCCeeEEEEEeC-CCc----EEEEEEccCCC-hhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEE
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILP-DGT----VVAVKRAQEGS-LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVL 697 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~-~g~----~vAVK~l~~~~-~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~L 697 (722)
++|...+.||+|+||+||+|... ++. .||+|.+.... ....+.+.+|+.++.+++|||||+++++|. ++..++
T Consensus 13 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~~ 91 (325)
T 3kex_A 13 TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCP-GSSLQL 91 (325)
T ss_dssp TTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEEC-BSSEEE
T ss_pred hHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEc-CCccEE
Confidence 35677789999999999999863 344 38888875432 223356889999999999999999999986 567889
Q ss_pred EecccccCcHHHHHHH
Q 004953 698 PLKLYIYLFIFQFSIK 713 (722)
Q Consensus 698 v~ey~~~G~L~~~l~~ 713 (722)
|+||+++|+|.+++++
T Consensus 92 v~e~~~~~~L~~~l~~ 107 (325)
T 3kex_A 92 VTQYLPLGSLLDHVRQ 107 (325)
T ss_dssp EEECCTTCBSHHHHHS
T ss_pred EEEeCCCCCHHHHHHH
Confidence 9999999999888754
No 354
>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=98.87 E-value=4.1e-09 Score=114.35 Aligned_cols=81 Identities=23% Similarity=0.285 Sum_probs=62.6
Q ss_pred CCeeecCCCeeEEEEEeC---CCcEEEEEEccCCChhcHHHHHHHHHHHHhcCCCcccceEEEEEe--CCeEEEEecccc
Q 004953 629 STQIGQGGYGKVYKGILP---DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDE--EGEQVLPLKLYI 703 (722)
Q Consensus 629 ~~~iG~G~fG~Vy~g~l~---~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~--~~~~~Lv~ey~~ 703 (722)
.+.||+|+||+||+|... ++..||||++.... ....+.+|+++|.+++|||||++++++.. ....++||||++
T Consensus 26 g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~lv~e~~~ 103 (405)
T 3rgf_A 26 GCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTG--ISMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAE 103 (405)
T ss_dssp SCCCC-----EEEEEEESSSSCCCCEEEEECSSSS--CCHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEEEEEECCS
T ss_pred CcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCC--CCHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEEEEEeCCC
Confidence 468999999999999965 47889999996532 23578899999999999999999999965 678999999998
Q ss_pred cCcHHHHHH
Q 004953 704 YLFIFQFSI 712 (722)
Q Consensus 704 ~G~L~~~l~ 712 (722)
+ +|.+++.
T Consensus 104 ~-~l~~~~~ 111 (405)
T 3rgf_A 104 H-DLWHIIK 111 (405)
T ss_dssp E-EHHHHHH
T ss_pred C-CHHHHHH
Confidence 4 6766554
No 355
>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*
Probab=98.87 E-value=3.1e-09 Score=112.80 Aligned_cols=86 Identities=27% Similarity=0.407 Sum_probs=70.2
Q ss_pred cCccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCCCh--hcHHHHHHHHHHHHhcCCCcccceEEEEEe--------C
Q 004953 624 NNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSL--QGEKEFLTEIQFLSRLHHRNLVSLVGYCDE--------E 692 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~~~--~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~--------~ 692 (722)
++|...+.||+|+||+||+|.. .+|+.||||++..... .....+.+|++++.+++|||||++++++.. .
T Consensus 17 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 96 (351)
T 3mi9_A 17 SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRCK 96 (351)
T ss_dssp GGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC--------
T ss_pred cceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccCC
Confidence 4577788999999999999997 5689999999854322 224578899999999999999999999987 3
Q ss_pred CeEEEEecccccCcHHHH
Q 004953 693 GEQVLPLKLYIYLFIFQF 710 (722)
Q Consensus 693 ~~~~Lv~ey~~~G~L~~~ 710 (722)
+..++||||+++ +|.++
T Consensus 97 ~~~~lv~e~~~~-~l~~~ 113 (351)
T 3mi9_A 97 GSIYLVFDFCEH-DLAGL 113 (351)
T ss_dssp CEEEEEEECCSE-EHHHH
T ss_pred ceEEEEEeccCC-CHHHH
Confidence 468999999985 55443
No 356
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Probab=98.86 E-value=1.7e-09 Score=112.81 Aligned_cols=99 Identities=18% Similarity=0.273 Sum_probs=80.5
Q ss_pred ccHHHHHHhhcCccCCCeeecCCCeeEEEEEeCCCcEEEEEEccCC--ChhcHHHHHHHHHHHHhcC--CCcccceEEEE
Q 004953 614 FTYGEMALATNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEG--SLQGEKEFLTEIQFLSRLH--HRNLVSLVGYC 689 (722)
Q Consensus 614 ~~~~~~~~~t~~f~~~~~iG~G~fG~Vy~g~l~~g~~vAVK~l~~~--~~~~~~~f~~E~~~l~~l~--H~Niv~l~g~~ 689 (722)
+.++.+....++|...+.||+|+||.||++...+++.||||.+... .....+.|.+|++++.+++ |+||+++++++
T Consensus 18 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~ 97 (313)
T 3cek_A 18 LYFQSMSVKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYE 97 (313)
T ss_dssp --CCEEEETTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEE
T ss_pred CCeeeeeeccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEe
Confidence 3344444445678888999999999999999888999999998643 2334467999999999997 59999999999
Q ss_pred EeCCeEEEEecccccCcHHHHHHH
Q 004953 690 DEEGEQVLPLKLYIYLFIFQFSIK 713 (722)
Q Consensus 690 ~~~~~~~Lv~ey~~~G~L~~~l~~ 713 (722)
..++..++||| +.+|+|.+++.+
T Consensus 98 ~~~~~~~lv~e-~~~~~L~~~l~~ 120 (313)
T 3cek_A 98 ITDQYIYMVME-CGNIDLNSWLKK 120 (313)
T ss_dssp ECSSEEEEEEC-CCSEEHHHHHHH
T ss_pred ecCCEEEEEEe-cCCCcHHHHHHh
Confidence 99999999999 678899887654
No 357
>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...
Probab=98.86 E-value=4e-09 Score=113.02 Aligned_cols=87 Identities=17% Similarity=0.229 Sum_probs=71.9
Q ss_pred cCccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCCC--hhcHHHHHHHHHHHHhcCCCcccceEEEEEeCC------e
Q 004953 624 NNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGS--LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEG------E 694 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~~--~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~------~ 694 (722)
++|...+.||+|+||.||+|.. .+|+.||||++.... ....+.+.+|+.++.+++|||||++++++...+ .
T Consensus 25 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~ 104 (371)
T 2xrw_A 25 KRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQD 104 (371)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCCE
T ss_pred hheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeeccccccccccc
Confidence 5688889999999999999985 468899999986532 233457899999999999999999999997654 7
Q ss_pred EEEEecccccCcHHHHH
Q 004953 695 QVLPLKLYIYLFIFQFS 711 (722)
Q Consensus 695 ~~Lv~ey~~~G~L~~~l 711 (722)
.++||||+++ +|.+++
T Consensus 105 ~~lv~e~~~~-~l~~~~ 120 (371)
T 2xrw_A 105 VYIVMELMDA-NLCQVI 120 (371)
T ss_dssp EEEEEECCSE-EHHHHH
T ss_pred eEEEEEcCCC-CHHHHH
Confidence 8999999985 565543
No 358
>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7
Probab=98.86 E-value=2.1e-09 Score=114.94 Aligned_cols=90 Identities=18% Similarity=0.265 Sum_probs=68.2
Q ss_pred hcCccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCCC--hhcHHHHHHHHHHHHhcCCCcccceEEEEEeCC------
Q 004953 623 TNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGS--LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEG------ 693 (722)
Q Consensus 623 t~~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~~--~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~------ 693 (722)
.+.|...+.||+|+||.||+|.. .+|+.||||++.... ....+.+.+|++++.+++|||||++++++...+
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~ 103 (367)
T 1cm8_A 24 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT 103 (367)
T ss_dssp BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred cceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCc
Confidence 35677888999999999999986 468999999995432 223457899999999999999999999997653
Q ss_pred eEEEEecccccCcHHHHHHH
Q 004953 694 EQVLPLKLYIYLFIFQFSIK 713 (722)
Q Consensus 694 ~~~Lv~ey~~~G~L~~~l~~ 713 (722)
..++||||| +++|.+++++
T Consensus 104 ~~~lv~e~~-~~~L~~~~~~ 122 (367)
T 1cm8_A 104 DFYLVMPFM-GTDLGKLMKH 122 (367)
T ss_dssp CCEEEEECC-SEEHHHHHHH
T ss_pred eEEEEEecC-CCCHHHHHhc
Confidence 459999999 8888776543
No 359
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain, alternative splicing, ATP-binding, disease MU kinase, metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Probab=98.85 E-value=3.2e-09 Score=110.59 Aligned_cols=87 Identities=24% Similarity=0.338 Sum_probs=72.3
Q ss_pred hcCccCCCeeecCCCeeEEEEEeCCCcEEEEEEccCCC--hhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEec
Q 004953 623 TNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGS--LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPLK 700 (722)
Q Consensus 623 t~~f~~~~~iG~G~fG~Vy~g~l~~g~~vAVK~l~~~~--~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~e 700 (722)
.++|...+.||+|+||.||+|... ..+|||.++... ....+.|.+|++++.+++|||||++++++. .+..++|||
T Consensus 35 ~~~~~~~~~lG~G~~g~Vy~~~~~--~~~avk~~k~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-~~~~~lv~e 111 (307)
T 3lb7_A 35 ASEVMLSTRIGSGSFGTVYKGKWH--GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMT-KDNLAIVTQ 111 (307)
T ss_dssp TTSCCEEEEEEECSSCEEEEEESS--SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEEE
T ss_pred ccceEEEeEecCCCCeEEEEEEEC--CEEEEEEEecCCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEc-cCcEEEEEe
Confidence 356777889999999999999863 469999886532 333467999999999999999999999875 556889999
Q ss_pred ccccCcHHHHHH
Q 004953 701 LYIYLFIFQFSI 712 (722)
Q Consensus 701 y~~~G~L~~~l~ 712 (722)
|+++|+|.+++.
T Consensus 112 ~~~~~~L~~~l~ 123 (307)
T 3lb7_A 112 WCEGSSLYKHLH 123 (307)
T ss_dssp CCSSCBHHHHHH
T ss_pred cCCCCcHHHHHH
Confidence 999999988764
No 360
>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}
Probab=98.85 E-value=4.7e-09 Score=113.17 Aligned_cols=90 Identities=24% Similarity=0.390 Sum_probs=67.0
Q ss_pred hcCccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCC--ChhcHHHHHHHHHHHHhcC-CCcccceEEEEEeCC--eEE
Q 004953 623 TNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEG--SLQGEKEFLTEIQFLSRLH-HRNLVSLVGYCDEEG--EQV 696 (722)
Q Consensus 623 t~~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~--~~~~~~~f~~E~~~l~~l~-H~Niv~l~g~~~~~~--~~~ 696 (722)
.++|...+.||+|+||.||+|.. .+|+.||||++... .....+.+.+|+.++.+++ |||||++++++..++ ..+
T Consensus 8 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~~~ 87 (388)
T 3oz6_A 8 LRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRDVY 87 (388)
T ss_dssp HTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSCEE
T ss_pred cCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCEEE
Confidence 45788889999999999999985 46899999998543 2334457889999999997 999999999998654 689
Q ss_pred EEecccccCcHHHHHHH
Q 004953 697 LPLKLYIYLFIFQFSIK 713 (722)
Q Consensus 697 Lv~ey~~~G~L~~~l~~ 713 (722)
+|||||+ |+|.+++++
T Consensus 88 lv~e~~~-~~L~~~~~~ 103 (388)
T 3oz6_A 88 LVFDYME-TDLHAVIRA 103 (388)
T ss_dssp EEEECCS-EEHHHHHHH
T ss_pred EEecccC-cCHHHHHHc
Confidence 9999998 688776653
No 361
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*
Probab=98.85 E-value=4.7e-09 Score=108.75 Aligned_cols=84 Identities=14% Similarity=0.124 Sum_probs=70.4
Q ss_pred CccCC-CeeecCCCeeEEEEEe-CCCcEEEEEEccCCChhcHHHHHHHHHHH-HhcCCCcccceEEEEEe----CCeEEE
Q 004953 625 NFNSS-TQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQGEKEFLTEIQFL-SRLHHRNLVSLVGYCDE----EGEQVL 697 (722)
Q Consensus 625 ~f~~~-~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~~~~~~~~f~~E~~~l-~~l~H~Niv~l~g~~~~----~~~~~L 697 (722)
+|... +.||+|+||.||++.. .+++.||||+++. ...+.+|++++ ...+||||+++++++.. .+..++
T Consensus 18 ~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~-----~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~l 92 (299)
T 3m2w_A 18 DYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD-----CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLI 92 (299)
T ss_dssp TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC-----SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEE
T ss_pred chhhcCcccccCCCeEEEEEEEcCCCcEEEEEEecc-----cHHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCceEEE
Confidence 45444 6799999999999986 4689999999853 34678899888 55699999999999977 667899
Q ss_pred EecccccCcHHHHHHH
Q 004953 698 PLKLYIYLFIFQFSIK 713 (722)
Q Consensus 698 v~ey~~~G~L~~~l~~ 713 (722)
||||+++|+|.+++.+
T Consensus 93 v~e~~~~~~L~~~l~~ 108 (299)
T 3m2w_A 93 VMECLDGGELFSRIQD 108 (299)
T ss_dssp EECCCCSCBHHHHHHH
T ss_pred EEeecCCCcHHHHHHh
Confidence 9999999999888765
No 362
>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*
Probab=98.85 E-value=5.4e-09 Score=110.98 Aligned_cols=89 Identities=20% Similarity=0.330 Sum_probs=74.0
Q ss_pred hcCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCCh-hcHHHHHHHHHHHHhcCCCcccceEEEEEeC-----CeE
Q 004953 623 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL-QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEE-----GEQ 695 (722)
Q Consensus 623 t~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~~-~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~-----~~~ 695 (722)
.++|...+.||+|+||.||+|... +|+.||||+++.... .....+.+|++++.+++|||||++++++..+ +..
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 89 (353)
T 2b9h_A 10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEV 89 (353)
T ss_dssp CTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCCE
T ss_pred ccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccceE
Confidence 356888899999999999999964 588999999965432 3345789999999999999999999998764 678
Q ss_pred EEEecccccCcHHHHHH
Q 004953 696 VLPLKLYIYLFIFQFSI 712 (722)
Q Consensus 696 ~Lv~ey~~~G~L~~~l~ 712 (722)
++|+||++ |+|.+++.
T Consensus 90 ~lv~e~~~-~~L~~~~~ 105 (353)
T 2b9h_A 90 YIIQELMQ-TDLHRVIS 105 (353)
T ss_dssp EEEECCCS-EEHHHHHH
T ss_pred EEEEeccC-ccHHHHHh
Confidence 99999998 68877654
No 363
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*
Probab=98.84 E-value=1e-08 Score=107.63 Aligned_cols=89 Identities=22% Similarity=0.358 Sum_probs=71.8
Q ss_pred hcCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCC-hhcHHHHHHHHH-HHHhcCCCcccceEEEEEeCCeEEEEe
Q 004953 623 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS-LQGEKEFLTEIQ-FLSRLHHRNLVSLVGYCDEEGEQVLPL 699 (722)
Q Consensus 623 t~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~-~~~~~~f~~E~~-~l~~l~H~Niv~l~g~~~~~~~~~Lv~ 699 (722)
.++|...+.||+|+||.||+|... +|+.||||+++... .....++..|+. ++..++|||||+++|++..++..++||
T Consensus 21 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~lv~ 100 (327)
T 3aln_A 21 AEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICM 100 (327)
T ss_dssp SCSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEEEE
Confidence 356888899999999999999974 68999999997543 233445667776 677789999999999999999999999
Q ss_pred cccccCcHHHHHH
Q 004953 700 KLYIYLFIFQFSI 712 (722)
Q Consensus 700 ey~~~G~L~~~l~ 712 (722)
||+++ +|.+++.
T Consensus 101 e~~~~-~l~~~~~ 112 (327)
T 3aln_A 101 ELMST-SFDKFYK 112 (327)
T ss_dssp CCCSE-EHHHHHH
T ss_pred eecCC-ChHHHHH
Confidence 99995 6666554
No 364
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}
Probab=98.84 E-value=3.8e-09 Score=111.07 Aligned_cols=89 Identities=26% Similarity=0.490 Sum_probs=73.5
Q ss_pred cCccCCCeeecCCCeeEEEEEeC-CCc----EEEEEEccCC-ChhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEE
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILP-DGT----VVAVKRAQEG-SLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVL 697 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~-~g~----~vAVK~l~~~-~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~L 697 (722)
++|...+.||+|+||+||+|... ++. .||+|.+... .....++|.+|+.++.+++|||||+++++|...+ .++
T Consensus 15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-~~~ 93 (327)
T 3lzb_A 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQL 93 (327)
T ss_dssp TTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSS-EEE
T ss_pred hHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCC-ceE
Confidence 46777899999999999999853 444 4688887543 2344578999999999999999999999998754 789
Q ss_pred EecccccCcHHHHHHH
Q 004953 698 PLKLYIYLFIFQFSIK 713 (722)
Q Consensus 698 v~ey~~~G~L~~~l~~ 713 (722)
|+||+++|+|.+++++
T Consensus 94 v~~~~~~g~L~~~l~~ 109 (327)
T 3lzb_A 94 ITQLMPFGCLLDYVRE 109 (327)
T ss_dssp EECCCSSCBHHHHHHH
T ss_pred EEEecCCCcHHHHHHh
Confidence 9999999999888765
No 365
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Probab=98.84 E-value=1.6e-09 Score=113.01 Aligned_cols=93 Identities=18% Similarity=0.334 Sum_probs=69.8
Q ss_pred HhhcCccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCCChh------cHHHHHHHHHHHHhc----CCCcccceEEEE
Q 004953 621 LATNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQ------GEKEFLTEIQFLSRL----HHRNLVSLVGYC 689 (722)
Q Consensus 621 ~~t~~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~~~~------~~~~f~~E~~~l~~l----~H~Niv~l~g~~ 689 (722)
...++|...+.||+|+||.||+|.. .+++.||||+++..... ....+.+|+.++.++ +|+||+++++++
T Consensus 28 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~~ 107 (312)
T 2iwi_A 28 AFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDWF 107 (312)
T ss_dssp -----CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEEC
T ss_pred hhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEEE
Confidence 3456788889999999999999985 46889999999654321 123467899999998 899999999999
Q ss_pred EeCCeEEEEecc-cccCcHHHHHHH
Q 004953 690 DEEGEQVLPLKL-YIYLFIFQFSIK 713 (722)
Q Consensus 690 ~~~~~~~Lv~ey-~~~G~L~~~l~~ 713 (722)
...+..++|+|| +++|+|.+++.+
T Consensus 108 ~~~~~~~~v~e~~~~~~~L~~~l~~ 132 (312)
T 2iwi_A 108 ETQEGFMLVLERPLPAQDLFDYITE 132 (312)
T ss_dssp -----CEEEEECCSSEEEHHHHHHH
T ss_pred ecCCeEEEEEEecCCCCCHHHHHHh
Confidence 998999999999 899999888764
No 366
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=98.84 E-value=4.1e-09 Score=114.07 Aligned_cols=84 Identities=15% Similarity=0.133 Sum_probs=68.5
Q ss_pred CccCC-CeeecCCCeeEEEEEeC-CCcEEEEEEccCCChhcHHHHHHHHHHHHh-cCCCcccceEEEEEe----CCeEEE
Q 004953 625 NFNSS-TQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSR-LHHRNLVSLVGYCDE----EGEQVL 697 (722)
Q Consensus 625 ~f~~~-~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~-l~H~Niv~l~g~~~~----~~~~~L 697 (722)
+|... +.||+|+||+||++... +|+.||||+++. ...+.+|++++.+ .+|||||++++++.. .+..++
T Consensus 62 ~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~-----~~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~~l 136 (400)
T 1nxk_A 62 DYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD-----CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLI 136 (400)
T ss_dssp TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC-----SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEE
T ss_pred cceeccceeeeccCeEEEEEEECCCCCEEEEEEeCc-----chhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEEEE
Confidence 34443 68999999999999864 588999999863 2457789988754 589999999999875 557899
Q ss_pred EecccccCcHHHHHHH
Q 004953 698 PLKLYIYLFIFQFSIK 713 (722)
Q Consensus 698 v~ey~~~G~L~~~l~~ 713 (722)
|||||++|+|.+++.+
T Consensus 137 v~E~~~gg~L~~~l~~ 152 (400)
T 1nxk_A 137 VMECLDGGELFSRIQD 152 (400)
T ss_dssp EEECCCSEEHHHHHHC
T ss_pred EEEeCCCCcHHHHHHH
Confidence 9999999999888754
No 367
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=98.83 E-value=4.2e-09 Score=112.83 Aligned_cols=87 Identities=22% Similarity=0.326 Sum_probs=71.9
Q ss_pred hcCccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCCC--hhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCeE----
Q 004953 623 TNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGS--LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQ---- 695 (722)
Q Consensus 623 t~~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~~--~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~---- 695 (722)
.++|...+.||+|+||+||+|.. .+|+.||||++.... ....+.+.+|+.++.+++|||||++++++...+..
T Consensus 41 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 120 (371)
T 4exu_A 41 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY 120 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCC
T ss_pred cccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccce
Confidence 35677788999999999999985 468999999997542 22346789999999999999999999999876654
Q ss_pred --EEEecccccCcHHHH
Q 004953 696 --VLPLKLYIYLFIFQF 710 (722)
Q Consensus 696 --~Lv~ey~~~G~L~~~ 710 (722)
++||||++ |+|.++
T Consensus 121 ~~~lv~e~~~-~~l~~~ 136 (371)
T 4exu_A 121 DFYLVMPFMQ-TDLQKI 136 (371)
T ss_dssp CCEEEEECCC-EEHHHH
T ss_pred eEEEEEcccc-ccHHHH
Confidence 99999998 577553
No 368
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}
Probab=98.82 E-value=9.6e-09 Score=108.20 Aligned_cols=86 Identities=27% Similarity=0.395 Sum_probs=68.0
Q ss_pred cCccCCCeeecCCCeeEEEEEeCCCcEEEEEEccCCChhcHHHHHHHHHH--HHhcCCCcccceEEEEEe-----CCeEE
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQF--LSRLHHRNLVSLVGYCDE-----EGEQV 696 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~~g~~vAVK~l~~~~~~~~~~f~~E~~~--l~~l~H~Niv~l~g~~~~-----~~~~~ 696 (722)
++|...+.||+|+||.||+|.. +++.||||++... ....+..|.++ +..++|+||+++++++.. ....+
T Consensus 13 ~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~ 88 (336)
T 3g2f_A 13 DNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFA---NRQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEYL 88 (336)
T ss_dssp TSEEEEEEEEECSSEEEEEEEE-TTEEEEEEEEEGG---GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEEEE
T ss_pred HHhheeeecccCCCeEEEEEEE-CCeEEEEEEeecc---chhhHHHHHHHHHHHhccCcchhhheecccccccCCCceEE
Confidence 5677788999999999999987 6899999998643 23455555555 445899999999987653 23568
Q ss_pred EEecccccCcHHHHHHH
Q 004953 697 LPLKLYIYLFIFQFSIK 713 (722)
Q Consensus 697 Lv~ey~~~G~L~~~l~~ 713 (722)
+||||+++|+|.+++.+
T Consensus 89 lv~e~~~~g~L~~~l~~ 105 (336)
T 3g2f_A 89 LVMEYYPNGSLXKYLSL 105 (336)
T ss_dssp EEECCCTTCBHHHHHHH
T ss_pred EEEecCCCCcHHHHHhh
Confidence 99999999999888753
No 369
>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...
Probab=98.82 E-value=6.2e-09 Score=111.18 Aligned_cols=89 Identities=19% Similarity=0.262 Sum_probs=73.7
Q ss_pred hcCccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCCC-hhcHHHHHHHHHHHHhcCCCcccceEEEEEeC-----CeE
Q 004953 623 TNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGS-LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEE-----GEQ 695 (722)
Q Consensus 623 t~~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~~-~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~-----~~~ 695 (722)
..+|...+.||+|+||.||+|.. .++..||||++.... ....+.+.+|++++.+++|||||++++++... ...
T Consensus 26 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 105 (364)
T 3qyz_A 26 GPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDV 105 (364)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCE
T ss_pred cccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccceE
Confidence 45688889999999999999985 468899999997533 23346799999999999999999999999764 368
Q ss_pred EEEecccccCcHHHHHH
Q 004953 696 VLPLKLYIYLFIFQFSI 712 (722)
Q Consensus 696 ~Lv~ey~~~G~L~~~l~ 712 (722)
++|+||++ |+|.++++
T Consensus 106 ~iv~e~~~-~~L~~~l~ 121 (364)
T 3qyz_A 106 YIVQDLME-TDLYKLLK 121 (364)
T ss_dssp EEEEECCS-EEHHHHHH
T ss_pred EEEEcccC-cCHHHHHH
Confidence 99999998 58877654
No 370
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}
Probab=98.81 E-value=5.4e-09 Score=111.26 Aligned_cols=88 Identities=26% Similarity=0.312 Sum_probs=61.8
Q ss_pred HHHHHhhcCccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCCChhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCe-
Q 004953 617 GEMALATNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGE- 694 (722)
Q Consensus 617 ~~~~~~t~~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~- 694 (722)
.+.....++|...+.||+|+||+||+|.. .+|..||||++.... .....+.+|++.+.+++|||||++++++...+.
T Consensus 16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~ 94 (360)
T 3e3p_A 16 ERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDP-RFRNRELQIMQDLAVLHHPNIVQLQSYFYTLGER 94 (360)
T ss_dssp HHHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCT-TCCCHHHHHHHHHHHHCCTTBCCEEEEEEEECSS
T ss_pred hhchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCc-cccHHHHHHHHHHHhcCCCCcccHHHhhhccccc
Confidence 34456678899999999999999999997 468999999985432 223457788899999999999999999976443
Q ss_pred ------EEEEecccccC
Q 004953 695 ------QVLPLKLYIYL 705 (722)
Q Consensus 695 ------~~Lv~ey~~~G 705 (722)
.++||||++++
T Consensus 95 ~~~~~~~~lv~e~~~~~ 111 (360)
T 3e3p_A 95 DRRDIYLNVVMEYVPDT 111 (360)
T ss_dssp CTTCEEEEEEEECCSCB
T ss_pred cccceeEEEEeeccccc
Confidence 78999999975
No 371
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...
Probab=98.81 E-value=3.5e-09 Score=113.23 Aligned_cols=87 Identities=21% Similarity=0.334 Sum_probs=66.8
Q ss_pred hcCccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCCC--hhcHHHHHHHHHHHHhcCCCcccceEEEEEeC------C
Q 004953 623 TNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGS--LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEE------G 693 (722)
Q Consensus 623 t~~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~~--~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~------~ 693 (722)
.++|...+.||+|+||.||+|.. .+|+.||||++.... ....+.+.+|++++.+++|||||++++++... .
T Consensus 28 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~~ 107 (367)
T 2fst_X 28 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN 107 (367)
T ss_dssp ETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred CCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccCC
Confidence 35788889999999999999985 568999999996532 23346789999999999999999999999754 5
Q ss_pred eEEEEecccccCcHHHH
Q 004953 694 EQVLPLKLYIYLFIFQF 710 (722)
Q Consensus 694 ~~~Lv~ey~~~G~L~~~ 710 (722)
..++|+||+ +++|.++
T Consensus 108 ~~~lv~e~~-~~~L~~~ 123 (367)
T 2fst_X 108 DVYLVTHLM-GADLNNI 123 (367)
T ss_dssp CCEEEEECC-CEECC--
T ss_pred eEEEEeccc-CCCHHHH
Confidence 679999999 5777444
No 372
>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=98.81 E-value=6.5e-09 Score=108.15 Aligned_cols=90 Identities=27% Similarity=0.363 Sum_probs=69.9
Q ss_pred hcCccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCCC-----hhcHHHHHHHHHHHHhc---CCCcccceEEEEEeCC
Q 004953 623 TNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGS-----LQGEKEFLTEIQFLSRL---HHRNLVSLVGYCDEEG 693 (722)
Q Consensus 623 t~~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~~-----~~~~~~f~~E~~~l~~l---~H~Niv~l~g~~~~~~ 693 (722)
+++|...+.||+|+||+||+|.. .+|+.||||+++... ......+.+|++++.++ +|||||+++++|....
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~~ 87 (308)
T 3g33_A 8 TSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATSR 87 (308)
T ss_dssp --CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEECC
T ss_pred ccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeeccC
Confidence 56788889999999999999995 568999999985321 11234677888777766 4999999999998755
Q ss_pred -----eEEEEecccccCcHHHHHHH
Q 004953 694 -----EQVLPLKLYIYLFIFQFSIK 713 (722)
Q Consensus 694 -----~~~Lv~ey~~~G~L~~~l~~ 713 (722)
..++||||++ |+|.+++.+
T Consensus 88 ~~~~~~~~lv~e~~~-~~L~~~~~~ 111 (308)
T 3g33_A 88 TDREIKVTLVFEHVD-QDLRTYLDK 111 (308)
T ss_dssp SSSEEEEEEEEECCC-CBHHHHHHT
T ss_pred CCCceeEEEEehhhh-cCHHHHHhh
Confidence 4799999998 588776543
No 373
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*
Probab=98.81 E-value=7.3e-09 Score=113.41 Aligned_cols=84 Identities=24% Similarity=0.158 Sum_probs=70.1
Q ss_pred ccCCCeeecCCCeeEEEEEeCCCcEEEEEEccCCChhcHHHHHHHHHHHHhc-CCCcccceEEEEEeCCeEEEEeccccc
Q 004953 626 FNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRL-HHRNLVSLVGYCDEEGEQVLPLKLYIY 704 (722)
Q Consensus 626 f~~~~~iG~G~fG~Vy~g~l~~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l-~H~Niv~l~g~~~~~~~~~Lv~ey~~~ 704 (722)
+...+.||+|+||+||.+...+|+.||||++... ..+.+.+|++++.++ +|||||++++++.+++..++||||++
T Consensus 17 ~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~---~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E~~~- 92 (434)
T 2rio_A 17 VVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLID---FCDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELCN- 92 (434)
T ss_dssp EEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGG---GHHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCCS-
T ss_pred eeccCeEeeCCCeEEEEEEEECCeEEEEEEEcHH---HHHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEecCC-
Confidence 3345789999999998766668999999998642 245688999999987 89999999999999999999999996
Q ss_pred CcHHHHHHH
Q 004953 705 LFIFQFSIK 713 (722)
Q Consensus 705 G~L~~~l~~ 713 (722)
|+|.+++.+
T Consensus 93 gsL~~~l~~ 101 (434)
T 2rio_A 93 LNLQDLVES 101 (434)
T ss_dssp EEHHHHHHT
T ss_pred CCHHHHHhc
Confidence 699777653
No 374
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=98.81 E-value=3.7e-09 Score=122.09 Aligned_cols=91 Identities=15% Similarity=0.093 Sum_probs=77.2
Q ss_pred hcCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCC---hhcHHHHHHHHHHHHhc-CCCcccceEEEEEeCCeEEE
Q 004953 623 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS---LQGEKEFLTEIQFLSRL-HHRNLVSLVGYCDEEGEQVL 697 (722)
Q Consensus 623 t~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~---~~~~~~f~~E~~~l~~l-~H~Niv~l~g~~~~~~~~~L 697 (722)
.++|...+.||+|+||+||+|... +++.||||+++... ....+.+..|.+++..+ +||+|+++++++.+.+..++
T Consensus 340 ~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~~l 419 (674)
T 3pfq_A 340 LTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYF 419 (674)
T ss_dssp CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEEEE
T ss_pred ccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEEEE
Confidence 457888899999999999999964 58899999986421 12335688999999988 89999999999999999999
Q ss_pred EecccccCcHHHHHHH
Q 004953 698 PLKLYIYLFIFQFSIK 713 (722)
Q Consensus 698 v~ey~~~G~L~~~l~~ 713 (722)
|||||++|+|.+++++
T Consensus 420 V~E~~~gg~L~~~l~~ 435 (674)
T 3pfq_A 420 VMEYVNGGDLMYHIQQ 435 (674)
T ss_dssp EEECCCSCBHHHHHHH
T ss_pred EEeCcCCCcHHHHHHh
Confidence 9999999999888765
No 375
>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}
Probab=98.80 E-value=5.3e-09 Score=111.13 Aligned_cols=85 Identities=22% Similarity=0.325 Sum_probs=69.9
Q ss_pred cCccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCCC--hhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCe------
Q 004953 624 NNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGS--LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGE------ 694 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~~--~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~------ 694 (722)
++|...+.||+|+||.||+|.. .+|+.||||++.... ....+.+.+|+.++.+++|||||++++++...+.
T Consensus 24 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 103 (353)
T 3coi_A 24 KTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYD 103 (353)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCCC
T ss_pred ceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEeccccccccee
Confidence 4577788999999999999986 468999999996532 2234578999999999999999999999987654
Q ss_pred EEEEecccccCcHHH
Q 004953 695 QVLPLKLYIYLFIFQ 709 (722)
Q Consensus 695 ~~Lv~ey~~~G~L~~ 709 (722)
.++||||++ |+|.+
T Consensus 104 ~~lv~e~~~-~~l~~ 117 (353)
T 3coi_A 104 FYLVMPFMQ-TDLQK 117 (353)
T ss_dssp CEEEEECCS-EEGGG
T ss_pred EEEEecccc-CCHHH
Confidence 499999998 56643
No 376
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=98.80 E-value=1.1e-09 Score=124.63 Aligned_cols=90 Identities=23% Similarity=0.352 Sum_probs=75.2
Q ss_pred cCccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCC-ChhcHHHHHHHHHHHHhcCCCcccceEEEEEe------CCeE
Q 004953 624 NNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEG-SLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDE------EGEQ 695 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~-~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~------~~~~ 695 (722)
++|...+.||+|+||.||+|.. .+|..||||+++.. .....+.|.+|++++.+++|||||++++++.. .+..
T Consensus 14 grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~~~ 93 (676)
T 3qa8_A 14 GPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDLP 93 (676)
T ss_dssp ---CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTSSC
T ss_pred CCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCCeE
Confidence 5688899999999999999986 45899999998754 33345679999999999999999999999765 6678
Q ss_pred EEEecccccCcHHHHHHH
Q 004953 696 VLPLKLYIYLFIFQFSIK 713 (722)
Q Consensus 696 ~Lv~ey~~~G~L~~~l~~ 713 (722)
++||||+++|+|.+++.+
T Consensus 94 ~LVmEy~~ggsL~~~L~~ 111 (676)
T 3qa8_A 94 LLAMEYCEGGDLRKYLNQ 111 (676)
T ss_dssp CCEEECCSSCBHHHHHHS
T ss_pred EEEEEeCCCCCHHHHHHh
Confidence 999999999999888764
No 377
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}
Probab=98.80 E-value=7e-10 Score=116.04 Aligned_cols=94 Identities=20% Similarity=0.294 Sum_probs=78.1
Q ss_pred HHHHHhhcCccCCCeeecCCCeeEEEEEeCCCcEEEEEEccCCC--hhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCe
Q 004953 617 GEMALATNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGS--LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGE 694 (722)
Q Consensus 617 ~~~~~~t~~f~~~~~iG~G~fG~Vy~g~l~~g~~vAVK~l~~~~--~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~ 694 (722)
+++....++|...+.||+|+||.||+|...+ .||||+++... ....+.|.+|+.++.+++||||+++++++..++.
T Consensus 26 ~~~~i~~~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~ 103 (319)
T 2y4i_B 26 QEWDIPFEQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPH 103 (319)
T ss_dssp GGSSSCCSCEECCCBCCCSSSSEEEEEEESS--SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSSC
T ss_pred ccccCCHHHeEEeeEeccCCceEEEEEEEcC--eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCc
Confidence 4444456778889999999999999998743 49999986432 2223468899999999999999999999999999
Q ss_pred EEEEecccccCcHHHHHH
Q 004953 695 QVLPLKLYIYLFIFQFSI 712 (722)
Q Consensus 695 ~~Lv~ey~~~G~L~~~l~ 712 (722)
.++|+||+++|+|.+++.
T Consensus 104 ~~iv~e~~~~~~L~~~l~ 121 (319)
T 2y4i_B 104 LAIITSLCKGRTLYSVVR 121 (319)
T ss_dssp EEEECBCCCSEEHHHHTT
T ss_pred eEEEeecccCCcHHHHHH
Confidence 999999999999987754
No 378
>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B
Probab=98.80 E-value=5.8e-09 Score=109.35 Aligned_cols=91 Identities=27% Similarity=0.397 Sum_probs=72.3
Q ss_pred hhcCccCCCeeecCCCeeEEEEEe--CCCcEEEEEEccCCC--hhcHHHHHHHHHHHHhc---CCCcccceEEEEE----
Q 004953 622 ATNNFNSSTQIGQGGYGKVYKGIL--PDGTVVAVKRAQEGS--LQGEKEFLTEIQFLSRL---HHRNLVSLVGYCD---- 690 (722)
Q Consensus 622 ~t~~f~~~~~iG~G~fG~Vy~g~l--~~g~~vAVK~l~~~~--~~~~~~f~~E~~~l~~l---~H~Niv~l~g~~~---- 690 (722)
+.++|...+.||+|+||.||+|.. .+|+.||||+++... ......+.+|+.++.++ +||||++++++|.
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~ 88 (326)
T 1blx_A 9 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRT 88 (326)
T ss_dssp GGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEEC
T ss_pred chhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeeccc
Confidence 456788889999999999999997 468899999985422 11223577788777766 8999999999997
Q ss_pred -eCCeEEEEecccccCcHHHHHHH
Q 004953 691 -EEGEQVLPLKLYIYLFIFQFSIK 713 (722)
Q Consensus 691 -~~~~~~Lv~ey~~~G~L~~~l~~ 713 (722)
.....++||||++ |+|.+++.+
T Consensus 89 ~~~~~~~lv~e~~~-~~L~~~l~~ 111 (326)
T 1blx_A 89 DRETKLTLVFEHVD-QDLTTYLDK 111 (326)
T ss_dssp SSEEEEEEEEECCS-CBHHHHHHH
T ss_pred CCCceEEEEEecCC-CCHHHHHHh
Confidence 4567899999998 699887655
No 379
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*
Probab=98.80 E-value=1e-08 Score=105.92 Aligned_cols=87 Identities=17% Similarity=0.227 Sum_probs=75.7
Q ss_pred cCccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCCChhcHHHHHHHHHHHHhc-CCCcccceEEEEEeCCeEEEEecc
Q 004953 624 NNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRL-HHRNLVSLVGYCDEEGEQVLPLKL 701 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l-~H~Niv~l~g~~~~~~~~~Lv~ey 701 (722)
++|...+.||+|+||.||+|.. .+|+.||||++.... ..+++.+|++++.++ +|+|++++++++......++||||
T Consensus 10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e~ 87 (298)
T 1csn_A 10 VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS--DAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDL 87 (298)
T ss_dssp TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT--TSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEEC
T ss_pred cceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCC--ccHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEEEEe
Confidence 4577788999999999999995 578999999986432 234688999999999 899999999999999999999999
Q ss_pred cccCcHHHHHHH
Q 004953 702 YIYLFIFQFSIK 713 (722)
Q Consensus 702 ~~~G~L~~~l~~ 713 (722)
+ +|+|.+++.+
T Consensus 88 ~-~~~L~~~l~~ 98 (298)
T 1csn_A 88 L-GPSLEDLLDL 98 (298)
T ss_dssp C-CCBHHHHHHH
T ss_pred c-CCCHHHHHHH
Confidence 9 9999888764
No 380
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=98.80 E-value=2.7e-09 Score=113.46 Aligned_cols=84 Identities=12% Similarity=0.102 Sum_probs=71.1
Q ss_pred cCccCCCeeecCCCeeEEEEEeCC---------CcEEEEEEccCCChhcHHHHHHHHHHHHhcCCCcccc----------
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILPD---------GTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVS---------- 684 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~~---------g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~H~Niv~---------- 684 (722)
++|...+.||+|+||.||+|.... ++.||||.+... +.+.+|++++.+++|||||+
T Consensus 42 ~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~-----~~~~~E~~~l~~l~h~niv~~~~~~~~~~~ 116 (352)
T 2jii_A 42 RQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD-----GRLFNEQNFFQRAAKPLQVNKWKKLYSTPL 116 (352)
T ss_dssp CEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT-----STHHHHHHHHHHHCCHHHHHHHHHHTTCTT
T ss_pred CeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc-----chHHHHHHHHHHhcccchhhhhhhhccCCc
Confidence 467788999999999999999753 789999998643 36889999999999999998
Q ss_pred -----eEEEEEe-CCeEEEEecccccCcHHHHHHH
Q 004953 685 -----LVGYCDE-EGEQVLPLKLYIYLFIFQFSIK 713 (722)
Q Consensus 685 -----l~g~~~~-~~~~~Lv~ey~~~G~L~~~l~~ 713 (722)
+++++.. ++..++||||+ +|+|.+++.+
T Consensus 117 ~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~ 150 (352)
T 2jii_A 117 LAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDV 150 (352)
T ss_dssp CSCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHH
T ss_pred cCccchhhccccCCcEEEEEecCC-CcCHHHHHHh
Confidence 7888876 77899999999 9999998765
No 381
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.79 E-value=1.2e-07 Score=102.25 Aligned_cols=286 Identities=10% Similarity=0.162 Sum_probs=169.5
Q ss_pred CccceeEEEcCCCC---CccccCccccCCCCCCEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCC
Q 004953 80 GYLHLRELQLLNLN---LSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKL 156 (722)
Q Consensus 80 ~~~~l~~L~L~~~~---l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 156 (722)
++.+|+.+.+..+. ++......|..+.+|+.+.+..+ ++.....+|.++.+|+.+.+..+ +.......|..+.+|
T Consensus 85 ~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L 162 (394)
T 4gt6_A 85 NCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSL 162 (394)
T ss_dssp TCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred CCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce-eeeecccceeccccc
Confidence 45678888887653 55555677888899998888655 55466677899999999999754 443666778889999
Q ss_pred cEEEcccCCCCCCCchhhcCcCCCCEEECCCccccCCCCcCCCCCCccceeecccCCCCCCCCcc-------------CC
Q 004953 157 DRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPE-------------LS 223 (722)
Q Consensus 157 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~-------------l~ 223 (722)
+.+.+..+ ++.+....|.+ .+|+.+.+..+... .....|..+.+++......+......... +.
T Consensus 163 ~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (394)
T 4gt6_A 163 HTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYP 239 (394)
T ss_dssp CEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECC
T ss_pred ccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhccccceecccccccccccceeecccccccccccccc
Confidence 99998765 45455556654 67888888765432 44556777777777766555433111100 11
Q ss_pred CCCCCcEEECcCCCCCCCCcchhccCCCCCcEEEccCCCCccCCCCCCCCCCccEEEccCCCCCccCCCcccc--CCcCE
Q 004953 224 ELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLDLSSNQLNGSIPPGRLS--LNITT 301 (722)
Q Consensus 224 ~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~--~~L~~ 301 (722)
....+..+.+..+ ++. .-...|.++.+|+.+.+..+..+-....+.++++|+.+.+. +.++ .|+...|. .+|+.
T Consensus 240 ~~~~~~~~~ip~~-v~~-i~~~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~-~I~~~aF~~c~~L~~ 315 (394)
T 4gt6_A 240 SQREDPAFKIPNG-VAR-IETHAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SRIT-ELPESVFAGCISLKS 315 (394)
T ss_dssp TTCCCSEEECCTT-EEE-ECTTTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TTCC-EECTTTTTTCTTCCE
T ss_pred cccccceEEcCCc-ceE-cccceeeecccccEEecccccceecCcccccccccccccCC-Cccc-ccCceeecCCCCcCE
Confidence 1122333333221 111 11345667777777777655443222346677777777775 3444 56665554 47888
Q ss_pred EEccCCcCcccCCccCCCCCCCCEEeCCCCcCcccCCh-hhhhhccCCCCcccEEEccCCcCCCCCCCCCCCCceEEEcc
Q 004953 302 IKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPS-SIWQSRTLNATETFILDFQNNNLTNISGSFNIPPNVTVRLR 380 (722)
Q Consensus 302 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ip~-~~~~~~~l~~~~L~~L~ls~N~l~~~~~~~~~~~l~~l~l~ 380 (722)
++|..+ ++.....+|.++.+|+.+.+..+ ++ .|.. .|. ++++|+.+++.+|.... ..-....+|+.+.+.
T Consensus 316 i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~-----~C~~L~~i~~~~~~~~~-~~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 316 IDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPESAFS-----NCTALNNIEYSGSRSQW-NAISTDSGLQNLPVA 386 (394)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCGGGGT-----TCTTCCEEEESSCHHHH-HTCBCCCCC------
T ss_pred EEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhHhHhh-----CCCCCCEEEECCceeeh-hhhhccCCCCEEEeC
Confidence 887654 55566677888888888887644 54 3433 333 34677777777764321 111134455666555
Q ss_pred CCc
Q 004953 381 GNP 383 (722)
Q Consensus 381 ~N~ 383 (722)
.|.
T Consensus 387 ~~~ 389 (394)
T 4gt6_A 387 PGS 389 (394)
T ss_dssp ---
T ss_pred CCC
Confidence 543
No 382
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}
Probab=98.78 E-value=6.4e-09 Score=112.37 Aligned_cols=80 Identities=23% Similarity=0.343 Sum_probs=64.8
Q ss_pred cCccCCCeeecCCCeeEEEEEeCCCcEEEEEEccCCChhcHHHHHHHHHHHHhcCCCcccceEEEEEeCCe------EEE
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGE------QVL 697 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~------~~L 697 (722)
.+|...+.||+|+||.||+|....+..||+|++..... ...+|+++|.+++|||||++++++...+. .++
T Consensus 40 ~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~----~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~l 115 (394)
T 4e7w_A 40 IAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKR----FKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLNL 115 (394)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCTT----SCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEEE
T ss_pred ceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCcc----hHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEEE
Confidence 34777889999999999999987777799998854322 12369999999999999999999975433 789
Q ss_pred EecccccCcH
Q 004953 698 PLKLYIYLFI 707 (722)
Q Consensus 698 v~ey~~~G~L 707 (722)
||||++++.+
T Consensus 116 v~e~~~~~l~ 125 (394)
T 4e7w_A 116 VLEYVPETVY 125 (394)
T ss_dssp EEECCSEEHH
T ss_pred EeeccCccHH
Confidence 9999997643
No 383
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Probab=98.78 E-value=5.3e-09 Score=110.84 Aligned_cols=88 Identities=15% Similarity=0.167 Sum_probs=66.4
Q ss_pred cCccCCCeeecCCCeeEEEEEeC----CCcEEEEEEccCCChh-----------cHHHHHHHHHHHHhcCCCcccceEEE
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILP----DGTVVAVKRAQEGSLQ-----------GEKEFLTEIQFLSRLHHRNLVSLVGY 688 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~----~g~~vAVK~l~~~~~~-----------~~~~f~~E~~~l~~l~H~Niv~l~g~ 688 (722)
++|...+.||+|+||.||+|... .+..||||+....... ..+.+.+|+..+..++||||++++++
T Consensus 37 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~~ 116 (345)
T 2v62_A 37 NQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGS 116 (345)
T ss_dssp CEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEEE
T ss_pred ceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeecc
Confidence 46777889999999999999975 5678999998654321 11347788999999999999999999
Q ss_pred EEe----CCeEEEEecccccCcHHHHHH
Q 004953 689 CDE----EGEQVLPLKLYIYLFIFQFSI 712 (722)
Q Consensus 689 ~~~----~~~~~Lv~ey~~~G~L~~~l~ 712 (722)
+.. .+..++||||+ +|+|.+++.
T Consensus 117 ~~~~~~~~~~~~lv~e~~-~~~L~~~l~ 143 (345)
T 2v62_A 117 GLTEFKGRSYRFMVMERL-GIDLQKISG 143 (345)
T ss_dssp EEEESSSCEEEEEEEECE-EEEHHHHCB
T ss_pred cccccCCCcEEEEEEecc-CCCHHHHHH
Confidence 988 67899999999 999977643
No 384
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Probab=98.78 E-value=6.1e-09 Score=111.25 Aligned_cols=91 Identities=14% Similarity=0.135 Sum_probs=70.2
Q ss_pred hhcCccCCCeeecCCCeeEEEEEeCC------CcEEEEEEccCCChhc-----------HHHHHHHHHHHHhcCCCcccc
Q 004953 622 ATNNFNSSTQIGQGGYGKVYKGILPD------GTVVAVKRAQEGSLQG-----------EKEFLTEIQFLSRLHHRNLVS 684 (722)
Q Consensus 622 ~t~~f~~~~~iG~G~fG~Vy~g~l~~------g~~vAVK~l~~~~~~~-----------~~~f~~E~~~l~~l~H~Niv~ 684 (722)
..++|...+.||+|+||.||+|.... ++.||||++....... ...+..|+..+.+++|+|||+
T Consensus 33 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~ 112 (364)
T 3op5_A 33 AAAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPK 112 (364)
T ss_dssp TCCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCC
T ss_pred CCCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCe
Confidence 34578888999999999999998754 4789999986543211 123455667778889999999
Q ss_pred eEEEEEeC----CeEEEEecccccCcHHHHHHH
Q 004953 685 LVGYCDEE----GEQVLPLKLYIYLFIFQFSIK 713 (722)
Q Consensus 685 l~g~~~~~----~~~~Lv~ey~~~G~L~~~l~~ 713 (722)
++|++... ...++||||+ +|+|.+++.+
T Consensus 113 ~~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~ 144 (364)
T 3op5_A 113 YWGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEA 144 (364)
T ss_dssp EEEEEEEEETTEEEEEEEEECE-EEEHHHHHHH
T ss_pred EEeeeeeccCCcceEEEEEeCC-CCCHHHHHHh
Confidence 99999864 4589999999 9999888754
No 385
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=98.76 E-value=8.9e-09 Score=112.24 Aligned_cols=80 Identities=25% Similarity=0.411 Sum_probs=63.8
Q ss_pred CccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCChhcHHHHHHHHHHHHhcCCCcccceEEEEEeC----C--eEEE
Q 004953 625 NFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEE----G--EQVL 697 (722)
Q Consensus 625 ~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~----~--~~~L 697 (722)
.|...+.||+|+||.||+|... +|+.||||++.... +.+.+|+++|.+++|||||++++++... + ..++
T Consensus 55 ~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~----~~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~~l 130 (420)
T 1j1b_A 55 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK----RFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNL 130 (420)
T ss_dssp EEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCT----TSCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEEEE
T ss_pred eEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccc----hhHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeEEe
Confidence 4666789999999999999974 58999999986432 2234799999999999999999998642 2 3678
Q ss_pred EecccccCcHHH
Q 004953 698 PLKLYIYLFIFQ 709 (722)
Q Consensus 698 v~ey~~~G~L~~ 709 (722)
||||+++ ++.+
T Consensus 131 v~e~~~~-~l~~ 141 (420)
T 1j1b_A 131 VLDYVPE-TVYR 141 (420)
T ss_dssp EEECCCE-EHHH
T ss_pred ehhcccc-cHHH
Confidence 9999986 4433
No 386
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}
Probab=98.76 E-value=7.6e-09 Score=113.10 Aligned_cols=86 Identities=20% Similarity=0.217 Sum_probs=70.7
Q ss_pred hcCccCCCeeecCCCeeEEEEEeCCCcEEEEEEccCCChhcHHHHHHHHHHHHhc-CCCcccceEEEEEeCCeEEEEecc
Q 004953 623 TNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRL-HHRNLVSLVGYCDEEGEQVLPLKL 701 (722)
Q Consensus 623 t~~f~~~~~iG~G~fG~Vy~g~l~~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l-~H~Niv~l~g~~~~~~~~~Lv~ey 701 (722)
..+|...+.||+|+||+||.....+|+.||||++..... ..+.+|++++.++ +|||||++++++.+.+..++||||
T Consensus 23 ~~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~---~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~E~ 99 (432)
T 3p23_A 23 KISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECF---SFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIEL 99 (432)
T ss_dssp TEEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTTE---EECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred cEEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHHHH---HHHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEEEC
Confidence 345777889999999996655455789999999965332 2356899999999 899999999999999999999999
Q ss_pred cccCcHHHHHH
Q 004953 702 YIYLFIFQFSI 712 (722)
Q Consensus 702 ~~~G~L~~~l~ 712 (722)
++ |+|.+++.
T Consensus 100 ~~-g~L~~~l~ 109 (432)
T 3p23_A 100 CA-ATLQEYVE 109 (432)
T ss_dssp CS-EEHHHHHH
T ss_pred CC-CCHHHHHH
Confidence 97 58877654
No 387
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=98.72 E-value=3.1e-08 Score=108.26 Aligned_cols=88 Identities=18% Similarity=0.287 Sum_probs=73.1
Q ss_pred cCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCChhcHHHHHHHHHHHHhc------CCCcccceEEEEEeCCeEE
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRL------HHRNLVSLVGYCDEEGEQV 696 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l------~H~Niv~l~g~~~~~~~~~ 696 (722)
.+|...+.||+|+||+||+|... +++.||||+++.. ....+++.+|++++..+ .|+||+++++++...+..+
T Consensus 97 ~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~~ 175 (429)
T 3kvw_A 97 YRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNE-KRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHIC 175 (429)
T ss_dssp TTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETTEEE
T ss_pred CcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCc-cchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCCeEE
Confidence 45777889999999999999864 5889999999753 23345788899988887 5679999999999999999
Q ss_pred EEecccccCcHHHHHHH
Q 004953 697 LPLKLYIYLFIFQFSIK 713 (722)
Q Consensus 697 Lv~ey~~~G~L~~~l~~ 713 (722)
+||||+. |+|.+++.+
T Consensus 176 lv~e~~~-~~L~~~l~~ 191 (429)
T 3kvw_A 176 MTFELLS-MNLYELIKK 191 (429)
T ss_dssp EEECCCC-CBHHHHHHH
T ss_pred EEEeccC-CCHHHHHHh
Confidence 9999997 688776654
No 388
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.71 E-value=3.8e-09 Score=112.13 Aligned_cols=203 Identities=12% Similarity=0.193 Sum_probs=109.6
Q ss_pred cceeEEEcCCCCCcc-c-------cCccccCCCCCCEEECCCCCCc---------cCCCccccCCCCCCEEeccCCcCCC
Q 004953 82 LHLRELQLLNLNLSG-N-------LSPEIGRLSYLTILDFMWNKIS---------GSIPKEIGNIKSLELLLLNGNELTG 144 (722)
Q Consensus 82 ~~l~~L~L~~~~l~~-~-------~~~~~~~l~~L~~L~Ls~n~l~---------~~~p~~~~~l~~L~~L~L~~n~l~~ 144 (722)
.+++.|.+......+ . +...+.++++|+.|.+..+... +.+...+..+++|+.|+|++|.-.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l- 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL- 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence 467888887665442 1 1233556788999988665331 123334566788888888776311
Q ss_pred CCCccCCCCCCCcEEEcccCCCCCCCchhhc--CcCCCCEEECCC--ccccCCCCcCCCCCCccceeecccCCCCCCCCc
Q 004953 145 SLPEELGYLPKLDRIQIDQNYISGSLPKSFA--NLNKTRHFHMNN--NSISGQIPPELSRLPSLVHMLLDNNNLTGYLPP 220 (722)
Q Consensus 145 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~--~l~~L~~L~L~~--N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~ 220 (722)
.++. + .+++|++|+|..+.+.......+. .+++|++|+|+. |...+.. .+. .| ..
T Consensus 186 ~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~--~~~---~l--------------~~ 244 (362)
T 2ra8_A 186 SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDG--DMN---VF--------------RP 244 (362)
T ss_dssp BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCS--CGG---GT--------------GG
T ss_pred eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccch--hHH---HH--------------HH
Confidence 2222 3 367788888877776543333343 567777777643 2211110 000 00 01
Q ss_pred cC--CCCCCCcEEECcCCCCCCCCcchhc---cCCCCCcEEEccCCCCccCC-----CCCCCCCCccEEEccCCCCCccC
Q 004953 221 EL--SELPKLLILQLDNNNFEGTTIPASY---SNMSKLLKLSLRNCSLQGPM-----PDLSRIPNLGYLDLSSNQLNGSI 290 (722)
Q Consensus 221 ~l--~~l~~L~~L~l~~N~l~~~~~~~~~---~~l~~L~~L~L~~N~l~~~~-----~~l~~l~~L~~L~Ls~N~l~~~i 290 (722)
.+ ..+++|+.|++.+|.+++ ..+..+ ..+++|+.|+|+.|.+++.. ..+..+++|+.|++++|.++...
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~i~~-~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~ 323 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAEEQN-VVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM 323 (362)
T ss_dssp GSCTTTCTTCCEEEEESCTTHH-HHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHH
T ss_pred HHhcCCCCCcCEEeCCCCCCch-HHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHH
Confidence 11 235677777777666643 122222 24677777777777776521 12345677888888888776322
Q ss_pred CCccccC-CcCEEEccCCc
Q 004953 291 PPGRLSL-NITTIKLSNNK 308 (722)
Q Consensus 291 p~~~~~~-~L~~L~L~~N~ 308 (722)
-.. +.. -...++++.++
T Consensus 324 ~~~-l~~alg~~~~~~~~~ 341 (362)
T 2ra8_A 324 KKE-LQKSLPMKIDVSDSQ 341 (362)
T ss_dssp HHH-HHHHCCSEEECCSBC
T ss_pred HHH-HHHHcCCEEEecCCc
Confidence 111 111 12446666655
No 389
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=98.71 E-value=1.6e-08 Score=113.48 Aligned_cols=84 Identities=8% Similarity=0.040 Sum_probs=62.5
Q ss_pred CCCeeecCCCeeEEEEEeCCCcEEEEEEccCCChh--------cHHHHHHHHHHHHhcCCCcccceEEEEEeCCeEEEEe
Q 004953 628 SSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQ--------GEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPL 699 (722)
Q Consensus 628 ~~~~iG~G~fG~Vy~g~l~~g~~vAVK~l~~~~~~--------~~~~f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~ 699 (722)
..+.||+|+||+||+|.. .+..+|+|+....... ..+.|.+|++++.+++|||||++..++...+..++||
T Consensus 340 ~~~~LG~G~fg~Vy~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lVm 418 (540)
T 3en9_A 340 PEHLIGKGAEADIKRDSY-LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRIMM 418 (540)
T ss_dssp --------CCEEEEEEEC-SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEEEE
T ss_pred CCCEEeeCCCEEEEEEEE-CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEEEE
Confidence 457899999999999965 5788999986432211 1245899999999999999998888888888889999
Q ss_pred cccccCcHHHHHH
Q 004953 700 KLYIYLFIFQFSI 712 (722)
Q Consensus 700 ey~~~G~L~~~l~ 712 (722)
||+++|+|.+++.
T Consensus 419 E~~~ggsL~~~l~ 431 (540)
T 3en9_A 419 SYINGKLAKDVIE 431 (540)
T ss_dssp ECCCSEEHHHHST
T ss_pred ECCCCCCHHHHHH
Confidence 9999999988754
No 390
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Probab=98.71 E-value=2.3e-08 Score=105.54 Aligned_cols=86 Identities=14% Similarity=0.158 Sum_probs=66.5
Q ss_pred hcCccC-CCeeecCCCeeEEEEEeC-CCcEEEEEEccCCChhcHHHHHHHH-HHHHhcCCCcccceEEEEEe----CCeE
Q 004953 623 TNNFNS-STQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEI-QFLSRLHHRNLVSLVGYCDE----EGEQ 695 (722)
Q Consensus 623 t~~f~~-~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~~~~~~~f~~E~-~~l~~l~H~Niv~l~g~~~~----~~~~ 695 (722)
.++|.. .++||+|+||+||+|... +|+.||||++... ....+|+ ..+..++||||+++++++.. .+..
T Consensus 27 ~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-----~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~ 101 (336)
T 3fhr_A 27 TDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDS-----PKARQEVDHHWQASGGPHIVCILDVYENMHHGKRCL 101 (336)
T ss_dssp GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEE
T ss_pred cceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCc-----HHHHHHHHHHHHhcCCCChHHHHHHHhhccCCCceE
Confidence 345766 356999999999999975 6899999998642 1222333 34567799999999999976 4458
Q ss_pred EEEecccccCcHHHHHHH
Q 004953 696 VLPLKLYIYLFIFQFSIK 713 (722)
Q Consensus 696 ~Lv~ey~~~G~L~~~l~~ 713 (722)
++||||+++|+|.+++.+
T Consensus 102 ~lv~e~~~gg~L~~~l~~ 119 (336)
T 3fhr_A 102 LIIMECMEGGELFSRIQE 119 (336)
T ss_dssp EEEEECCTTEEHHHHHHT
T ss_pred EEEEeccCCCCHHHHHHh
Confidence 999999999999888754
No 391
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Probab=98.71 E-value=2.1e-08 Score=105.44 Aligned_cols=88 Identities=24% Similarity=0.363 Sum_probs=74.3
Q ss_pred cCccCCCeeecCCCeeEEEEEe--CCCcEEEEEEccCCChhcHHHHHHHHHHHHhcCCCc------ccceEEEEEeCCeE
Q 004953 624 NNFNSSTQIGQGGYGKVYKGIL--PDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRN------LVSLVGYCDEEGEQ 695 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l--~~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~H~N------iv~l~g~~~~~~~~ 695 (722)
++|...+.||+|+||+||+|.. .+|+.||||+++.. ....+.+.+|++++.+++|++ ++++++++...+..
T Consensus 14 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~~~ 92 (339)
T 1z57_A 14 ARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNV-DRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGHI 92 (339)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETTEE
T ss_pred CceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecC-CchhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCCcE
Confidence 4677788999999999999985 36889999999643 233467899999999887765 99999999999999
Q ss_pred EEEecccccCcHHHHHHH
Q 004953 696 VLPLKLYIYLFIFQFSIK 713 (722)
Q Consensus 696 ~Lv~ey~~~G~L~~~l~~ 713 (722)
++||||+ +|+|.+++.+
T Consensus 93 ~lv~e~~-~~~l~~~l~~ 109 (339)
T 1z57_A 93 CIVFELL-GLSTYDFIKE 109 (339)
T ss_dssp EEEEECC-CCBHHHHHHH
T ss_pred EEEEcCC-CCCHHHHHHh
Confidence 9999999 8899887654
No 392
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=98.71 E-value=1.6e-08 Score=109.02 Aligned_cols=87 Identities=15% Similarity=0.247 Sum_probs=70.7
Q ss_pred cCccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCCChhcHHHHHHHHHHHHhcC--------CCcccceEEEEE----
Q 004953 624 NNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLH--------HRNLVSLVGYCD---- 690 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~--------H~Niv~l~g~~~---- 690 (722)
++|...+.||+|+||+||+|.. .+++.||||+++.. ....+.+.+|++++.+++ |+|||++++++.
T Consensus 37 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~~ 115 (397)
T 1wak_A 37 GRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSA-EHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGV 115 (397)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEET
T ss_pred CeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecC-CcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecCC
Confidence 5688889999999999999985 46889999999643 333467899999999986 788999999997
Q ss_pred eCCeEEEEecccccCcHHHHHH
Q 004953 691 EEGEQVLPLKLYIYLFIFQFSI 712 (722)
Q Consensus 691 ~~~~~~Lv~ey~~~G~L~~~l~ 712 (722)
.....++||||+ +|++.+++.
T Consensus 116 ~~~~~~lv~e~~-~~~l~~~~~ 136 (397)
T 1wak_A 116 NGTHICMVFEVL-GHHLLKWII 136 (397)
T ss_dssp TEEEEEEEECCC-CCBHHHHHH
T ss_pred CCceEEEEEecc-CccHHHHHH
Confidence 455789999999 556655543
No 393
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.68 E-value=5.4e-09 Score=110.91 Aligned_cols=70 Identities=19% Similarity=0.272 Sum_probs=38.4
Q ss_pred CCCCccEEEccCCCCCccCCCc----cccCCcCEEEccCCcCcccC----CccCCCCCCCCEEeCCCCcCcccCChhh
Q 004953 272 RIPNLGYLDLSSNQLNGSIPPG----RLSLNITTIKLSNNKLTGTI----PSNFSGLPRLQRLFIANNSLSGSIPSSI 341 (722)
Q Consensus 272 ~l~~L~~L~Ls~N~l~~~ip~~----~~~~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~ip~~~ 341 (722)
.+++|++|+|++|.+.+..+.. ...++|++|+|+.|.+++.. +..+..+++|+.|+|++|.++...-..+
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l 327 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKEL 327 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHH
Confidence 4567777777777765322211 12346666777666666532 2222345667777777776664433333
No 394
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=98.68 E-value=3.3e-08 Score=105.81 Aligned_cols=90 Identities=10% Similarity=-0.057 Sum_probs=60.2
Q ss_pred cCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCCh---hcHHHHHHHHHHHHhc--CCCcccceE-------EEEE
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL---QGEKEFLTEIQFLSRL--HHRNLVSLV-------GYCD 690 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~~---~~~~~f~~E~~~l~~l--~H~Niv~l~-------g~~~ 690 (722)
..|...+.||+|+||.||+|... +|+.||||++..... ...+.+.+|++++..+ +|||||+++ +++.
T Consensus 62 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d~~~ 141 (371)
T 3q60_A 62 RKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAVA 141 (371)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCCCEEEE
T ss_pred eeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeehhee
Confidence 44777889999999999999964 689999999976432 2234577885544444 699988755 4444
Q ss_pred eC-----------------CeEEEEecccccCcHHHHHHHH
Q 004953 691 EE-----------------GEQVLPLKLYIYLFIFQFSIKL 714 (722)
Q Consensus 691 ~~-----------------~~~~Lv~ey~~~G~L~~~l~~~ 714 (722)
.+ ...++|||||+ |+|.+++.+.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~ 181 (371)
T 3q60_A 142 VQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTL 181 (371)
T ss_dssp ETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHH
T ss_pred cCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHh
Confidence 33 23799999999 9999988763
No 395
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}
Probab=98.67 E-value=4.4e-08 Score=102.11 Aligned_cols=79 Identities=20% Similarity=0.326 Sum_probs=58.9
Q ss_pred cCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCCh-hcHHH-HHHHHHHHHhcCCCcccceEEEEEeCCeEEEEec
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL-QGEKE-FLTEIQFLSRLHHRNLVSLVGYCDEEGEQVLPLK 700 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~~-~~~~~-f~~E~~~l~~l~H~Niv~l~g~~~~~~~~~Lv~e 700 (722)
++|...+.||+|+||.||+|... +|+.||||++..... ....+ +..+..++..++||||+++++++..++..++|||
T Consensus 25 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lv~e 104 (318)
T 2dyl_A 25 NDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIAME 104 (318)
T ss_dssp GGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEEC
T ss_pred ccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEEEEEe
Confidence 45777789999999999999974 689999999975432 22233 4455567888899999999999999999999999
Q ss_pred cc
Q 004953 701 LY 702 (722)
Q Consensus 701 y~ 702 (722)
|+
T Consensus 105 ~~ 106 (318)
T 2dyl_A 105 LM 106 (318)
T ss_dssp CC
T ss_pred cc
Confidence 99
No 396
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Probab=98.66 E-value=5.9e-08 Score=100.02 Aligned_cols=87 Identities=18% Similarity=0.293 Sum_probs=72.7
Q ss_pred hcCccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCCChhcHHHHHHHHHHHHhcCCCcccceEEEE-EeCCeEEEEec
Q 004953 623 TNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYC-DEEGEQVLPLK 700 (722)
Q Consensus 623 t~~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~-~~~~~~~Lv~e 700 (722)
.++|...+.||+|+||+||+|.. .+|+.||||++..... .+++.+|++++.+++|++++..+++| ...+..++|||
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e 85 (296)
T 3uzp_A 8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVME 85 (296)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSS--CCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred ccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcc--hhHHHHHHHHHHHhhcCCCCCccccccCCCCceEEEEE
Confidence 35688889999999999999995 5789999999865432 24689999999999999888777776 45678899999
Q ss_pred ccccCcHHHHHH
Q 004953 701 LYIYLFIFQFSI 712 (722)
Q Consensus 701 y~~~G~L~~~l~ 712 (722)
|+ +|+|.+++.
T Consensus 86 ~~-~~~L~~~~~ 96 (296)
T 3uzp_A 86 LL-GPSLEDLFN 96 (296)
T ss_dssp CC-CCBHHHHHH
T ss_pred ec-CCCHHHHHH
Confidence 99 999988876
No 397
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=98.65 E-value=9.8e-09 Score=107.51 Aligned_cols=92 Identities=22% Similarity=0.421 Sum_probs=75.9
Q ss_pred hhcCccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCCChh------cHHHHHHHHHHHHhcC--CCcccceEEEEEeC
Q 004953 622 ATNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQ------GEKEFLTEIQFLSRLH--HRNLVSLVGYCDEE 692 (722)
Q Consensus 622 ~t~~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~~~~------~~~~f~~E~~~l~~l~--H~Niv~l~g~~~~~ 692 (722)
..++|...+.||+|+||.||+|.. .+++.||||.++..... ..+.+.+|++++.+++ |+||+++++++..+
T Consensus 41 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~~ 120 (320)
T 3a99_A 41 LESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERP 120 (320)
T ss_dssp CTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECS
T ss_pred ccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEecC
Confidence 345688889999999999999985 56889999998643211 1245778999999996 59999999999999
Q ss_pred CeEEEEeccccc-CcHHHHHHH
Q 004953 693 GEQVLPLKLYIY-LFIFQFSIK 713 (722)
Q Consensus 693 ~~~~Lv~ey~~~-G~L~~~l~~ 713 (722)
+..++|+||+.+ |+|.+++.+
T Consensus 121 ~~~~lv~e~~~~~~~L~~~l~~ 142 (320)
T 3a99_A 121 DSFVLILERPEPVQDLFDFITE 142 (320)
T ss_dssp SEEEEEEECCSSEEEHHHHHHH
T ss_pred CcEEEEEEcCCCCccHHHHHhc
Confidence 999999999986 899887654
No 398
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=98.64 E-value=3.4e-08 Score=101.33 Aligned_cols=98 Identities=11% Similarity=0.069 Sum_probs=71.5
Q ss_pred HHHHhhcCccCCCeeecCCCeeEEEEEeCCCcEEEEEEccCCCh------------------hcHHHHHHHHHHHHhcCC
Q 004953 618 EMALATNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSL------------------QGEKEFLTEIQFLSRLHH 679 (722)
Q Consensus 618 ~~~~~t~~f~~~~~iG~G~fG~Vy~g~l~~g~~vAVK~l~~~~~------------------~~~~~f~~E~~~l~~l~H 679 (722)
.+......|...+.||+|+||.||+|...+|+.||||.++.... .....|.+|+++|.+++
T Consensus 84 ~~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~- 162 (282)
T 1zar_A 84 RLVRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ- 162 (282)
T ss_dssp HHHHTTSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHhCCeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc-
Confidence 33444445666689999999999999997799999999864321 12356999999999999
Q ss_pred CcccceEEEEEeCCeEEEEecccccCcHHH--------HHHHHHhhhc
Q 004953 680 RNLVSLVGYCDEEGEQVLPLKLYIYLFIFQ--------FSIKLIFAIA 719 (722)
Q Consensus 680 ~Niv~l~g~~~~~~~~~Lv~ey~~~G~L~~--------~l~~~~~~~a 719 (722)
| +++.+++. .+..++||||+++|+|.+ +..+++.+++
T Consensus 163 -~-~~v~~~~~-~~~~~lvmE~~~g~~L~~l~~~~~~~i~~qi~~~l~ 207 (282)
T 1zar_A 163 -G-LAVPKVYA-WEGNAVLMELIDAKELYRVRVENPDEVLDMILEEVA 207 (282)
T ss_dssp -T-SSSCCEEE-EETTEEEEECCCCEEGGGCCCSCHHHHHHHHHHHHH
T ss_pred -C-CCcCeEEe-ccceEEEEEecCCCcHHHcchhhHHHHHHHHHHHHH
Confidence 4 66666553 356699999999998854 4455555544
No 399
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A
Probab=98.61 E-value=3.6e-08 Score=105.37 Aligned_cols=88 Identities=17% Similarity=0.239 Sum_probs=73.7
Q ss_pred cCccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCCChhcHHHHHHHHHHHHhcC-----------CCcccceEEEEEe
Q 004953 624 NNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLH-----------HRNLVSLVGYCDE 691 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~-----------H~Niv~l~g~~~~ 691 (722)
++|...+.||+|+||+||+|.. .+++.||||++... ....+.+.+|++++.+++ |+||+++++++..
T Consensus 19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~~ 97 (373)
T 1q8y_A 19 ARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGD-KVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNH 97 (373)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEE
T ss_pred CeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCC-ccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhhc
Confidence 4677789999999999999985 56899999999643 233467899999999886 8999999999986
Q ss_pred CC----eEEEEecccccCcHHHHHHH
Q 004953 692 EG----EQVLPLKLYIYLFIFQFSIK 713 (722)
Q Consensus 692 ~~----~~~Lv~ey~~~G~L~~~l~~ 713 (722)
.+ ..++||||+ +|+|.+++.+
T Consensus 98 ~~~~~~~~~lv~e~~-~~~L~~~~~~ 122 (373)
T 1q8y_A 98 KGPNGVHVVMVFEVL-GENLLALIKK 122 (373)
T ss_dssp EETTEEEEEEEECCC-CEEHHHHHHH
T ss_pred cCCCCceEEEEEecC-CCCHHHHHHH
Confidence 54 789999999 8999887765
No 400
>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A
Probab=98.60 E-value=8.3e-08 Score=98.82 Aligned_cols=88 Identities=18% Similarity=0.277 Sum_probs=70.0
Q ss_pred hcCccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCCChhcHHHHHHHHHHHHhcCCCcccceEEEE-EeCCeEEEEec
Q 004953 623 TNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYC-DEEGEQVLPLK 700 (722)
Q Consensus 623 t~~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~H~Niv~l~g~~-~~~~~~~Lv~e 700 (722)
.++|...+.||+|+||+||+|.. .+++.||||++..... .+++.+|++++.+++|++++..+++| ...+..++|||
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e 85 (296)
T 4hgt_A 8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVME 85 (296)
T ss_dssp ---CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC-----CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred CCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeeccccc--chHHHHHHHHHHHhcCCCCCCeeeeecCCCCceEEEEE
Confidence 46788889999999999999995 5688999998754322 23588999999999999888887777 45778899999
Q ss_pred ccccCcHHHHHHH
Q 004953 701 LYIYLFIFQFSIK 713 (722)
Q Consensus 701 y~~~G~L~~~l~~ 713 (722)
|+ +|+|.+++.+
T Consensus 86 ~~-~~~L~~~~~~ 97 (296)
T 4hgt_A 86 LL-GPSLEDLFNF 97 (296)
T ss_dssp CC-CCBHHHHHHH
T ss_pred cc-CCCHHHHHHH
Confidence 99 9999888763
No 401
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=98.58 E-value=7.9e-08 Score=103.28 Aligned_cols=90 Identities=17% Similarity=0.225 Sum_probs=74.1
Q ss_pred hhcCccCCCeeecCCCeeEEEEEeC-CCcEEEEEEccCCChhcHHHHHHHHHHHHhcC-CC-----cccceEEEEEeCCe
Q 004953 622 ATNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLH-HR-----NLVSLVGYCDEEGE 694 (722)
Q Consensus 622 ~t~~f~~~~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~-H~-----Niv~l~g~~~~~~~ 694 (722)
..++|...+.||+|+||+||+|... +++.||||+++.. ....+++..|++++..++ |+ +||++.+++...+.
T Consensus 52 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~ 130 (382)
T 2vx3_A 52 WMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNK-KAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNH 130 (382)
T ss_dssp ETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETTE
T ss_pred eeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEecc-HHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccCCc
Confidence 3567888899999999999999864 5889999999743 233456888999998885 55 49999999999999
Q ss_pred EEEEecccccCcHHHHHHH
Q 004953 695 QVLPLKLYIYLFIFQFSIK 713 (722)
Q Consensus 695 ~~Lv~ey~~~G~L~~~l~~ 713 (722)
.++||||++ |+|.+++++
T Consensus 131 ~~lv~e~~~-~~L~~~l~~ 148 (382)
T 2vx3_A 131 LCLVFEMLS-YNLYDLLRN 148 (382)
T ss_dssp EEEEEECCC-CBHHHHHHH
T ss_pred eEEEEecCC-CCHHHHHhh
Confidence 999999996 588887654
No 402
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}
Probab=98.57 E-value=1.6e-07 Score=103.93 Aligned_cols=87 Identities=21% Similarity=0.255 Sum_probs=71.2
Q ss_pred cCccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCCChhcHHHHHHHHHHHHhcCC-CcccceEEEEEeCCeEEEEecc
Q 004953 624 NNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHH-RNLVSLVGYCDEEGEQVLPLKL 701 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~H-~Niv~l~g~~~~~~~~~Lv~ey 701 (722)
++|...+.||+|+||.||+|+. .+++.||||++..... ..++..|++++..++| ++++.+..++...+..++||||
T Consensus 7 ~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~--~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvme~ 84 (483)
T 3sv0_A 7 NKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTK--HPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVMDL 84 (483)
T ss_dssp TTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCS--SCCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEEEC
T ss_pred CcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccc--cHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEEEC
Confidence 5688899999999999999995 5689999998764432 2358899999999987 5556666666778899999999
Q ss_pred cccCcHHHHHHH
Q 004953 702 YIYLFIFQFSIK 713 (722)
Q Consensus 702 ~~~G~L~~~l~~ 713 (722)
+ +|+|.+++.+
T Consensus 85 ~-g~sL~~ll~~ 95 (483)
T 3sv0_A 85 L-GPSLEDLFNF 95 (483)
T ss_dssp C-CCBHHHHHHH
T ss_pred C-CCCHHHHHHh
Confidence 9 9999888753
No 403
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*
Probab=98.53 E-value=1.2e-07 Score=100.30 Aligned_cols=88 Identities=19% Similarity=0.317 Sum_probs=72.2
Q ss_pred cCccCCCeeecCCCeeEEEEEeC-CC-cEEEEEEccCCChhcHHHHHHHHHHHHhcCCCc------ccceEEEEEeCCeE
Q 004953 624 NNFNSSTQIGQGGYGKVYKGILP-DG-TVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRN------LVSLVGYCDEEGEQ 695 (722)
Q Consensus 624 ~~f~~~~~iG~G~fG~Vy~g~l~-~g-~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~H~N------iv~l~g~~~~~~~~ 695 (722)
++|...+.||+|+||+||+|... ++ ..||||+++.. ....+.+.+|++++.+++|++ ++.+.+++...+..
T Consensus 19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 97 (355)
T 2eu9_A 19 ERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNV-GKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHM 97 (355)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETTEE
T ss_pred ccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEccc-ccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCCeE
Confidence 56888899999999999999863 34 68999999643 233467889999999998877 99999999999999
Q ss_pred EEEecccccCcHHHHHHH
Q 004953 696 VLPLKLYIYLFIFQFSIK 713 (722)
Q Consensus 696 ~Lv~ey~~~G~L~~~l~~ 713 (722)
++||||+ +|++.+++.+
T Consensus 98 ~lv~e~~-~~~l~~~l~~ 114 (355)
T 2eu9_A 98 CIAFELL-GKNTFEFLKE 114 (355)
T ss_dssp EEEEECC-CCBHHHHHHH
T ss_pred EEEEecc-CCChHHHHHh
Confidence 9999999 6666665543
No 404
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.51 E-value=9.2e-06 Score=86.87 Aligned_cols=264 Identities=10% Similarity=0.047 Sum_probs=129.2
Q ss_pred ceeEEEcCCCCCccccCccccCCCCCCEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEEcc
Q 004953 83 HLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQID 162 (722)
Q Consensus 83 ~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 162 (722)
+++.+.+.. +++......|.++.+|+.++|..+ ++.+-..+|.++ +|+.+.+..+ ++......|.. .+|+.+.+.
T Consensus 47 ~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i~lp 121 (379)
T 4h09_A 47 RISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDDFEFP 121 (379)
T ss_dssp GCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSEEECC
T ss_pred CCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcccccCC
Confidence 566666653 455555567778888888888644 554555667665 5666666543 44333444544 367777776
Q ss_pred cCCCCCCCchhhcCcCCCCEEECCCccccCCCCcCCCCCCccceeecccCCCCC------------CCCccCCCCCCCcE
Q 004953 163 QNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTG------------YLPPELSELPKLLI 230 (722)
Q Consensus 163 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~------------~~~~~l~~l~~L~~ 230 (722)
.+ ++......|.+. +|+.+.+..+ ++......|....+++.+.+..+.... .....+.....+..
T Consensus 122 ~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (379)
T 4h09_A 122 GA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTE 198 (379)
T ss_dssp TT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSE
T ss_pred Cc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccccc
Confidence 54 332333444443 4555544433 222334455566666666555443221 11112233334444
Q ss_pred EECcCCCCCCCCcchhccCCCCCcEEEccCCCCccCCCCCCCCCCccEEEccCCCCCccCCCcccc--CCcCEEEccCCc
Q 004953 231 LQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLDLSSNQLNGSIPPGRLS--LNITTIKLSNNK 308 (722)
Q Consensus 231 L~l~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~--~~L~~L~L~~N~ 308 (722)
+.+....-. .....+..+.+|+.+.+..+--.-....+..+..|+.+.+..+ ++ .|....+. .+|+.+.+..+
T Consensus 199 ~~~~~~~~~--i~~~~f~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~- 273 (379)
T 4h09_A 199 FTIPSTVKT--VTAYGFSYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYAK- 273 (379)
T ss_dssp EECCTTCCE--ECTTTTTTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTT-CC-EECTTTTTTCTTCCEEEECCC-
T ss_pred cccccceeE--EeecccccccccceeeeccceeEEccccccCCccceEEEcCCC-cc-EeCccccceeehhcccccccc-
Confidence 443332211 1223344455566555544322111123455556666666544 33 33333332 35666665433
Q ss_pred CcccCCccCCCCCCCCEEeCCCCcCcccCChhhhhhccCCCCcccEEEccCCcCCCC
Q 004953 309 LTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNI 365 (722)
Q Consensus 309 l~~~~~~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~ls~N~l~~~ 365 (722)
++......|.++.+|+.+.+.++.++..-...|.. +.+|+.+++..+ ++.+
T Consensus 274 i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~-----c~~L~~i~lp~~-l~~I 324 (379)
T 4h09_A 274 VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMD-----CVKLSSVTLPTA-LKTI 324 (379)
T ss_dssp CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTT-----CTTCCEEECCTT-CCEE
T ss_pred ceeccccccccccccccccccccccceehhhhhcC-----CCCCCEEEcCcc-ccEE
Confidence 44444455666666666666665555222223322 345555655433 4433
No 405
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.43 E-value=2e-05 Score=84.19 Aligned_cols=267 Identities=10% Similarity=0.057 Sum_probs=159.0
Q ss_pred CCccceeEEEcCCCCCccccCccccCCCCCCEEECCCCCCccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcE
Q 004953 79 DGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDR 158 (722)
Q Consensus 79 ~~~~~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 158 (722)
.++.+|+.+++.. .++......|.++ +|+.+.+..+ +......+|.. .+|+.+.+..+- .......|.+. +|+.
T Consensus 66 ~~C~~L~~I~lp~-~v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i~lp~~~-~~i~~~~F~~~-~l~~ 139 (379)
T 4h09_A 66 NSCYNMTKVTVAS-TVTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDDFEFPGAT-TEIGNYIFYNS-SVKR 139 (379)
T ss_dssp TTCTTCCEEEECT-TCCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSEEECCTTC-CEECTTTTTTC-CCCE
T ss_pred hCCCCCCEEEeCC-cceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcccccCCCcc-ccccccccccc-eeee
Confidence 4456899999975 4666666778776 6888888654 54344555655 489999997653 32444445544 5666
Q ss_pred EEcccCCCCCCCchhhcCcCCCCEEECCCccccC------------CCCcCCCCCCccceeecccCCCCCCCCccCCCCC
Q 004953 159 IQIDQNYISGSLPKSFANLNKTRHFHMNNNSISG------------QIPPELSRLPSLVHMLLDNNNLTGYLPPELSELP 226 (722)
Q Consensus 159 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~------------~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~ 226 (722)
+.+..+ ++......|.+..+++.+.+..+.... .....+.....+..+.+.... .......+..+.
T Consensus 140 ~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~ 217 (379)
T 4h09_A 140 IVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTV-KTVTAYGFSYGK 217 (379)
T ss_dssp EEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTC-CEECTTTTTTCS
T ss_pred eeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccce-eEEeeccccccc
Confidence 666543 444556677778888877766543221 111223334445555444332 223445566677
Q ss_pred CCcEEECcCCCCCCCCcchhccCCCCCcEEEccCCCCccCCC-CCCCCCCccEEEccCCCCCccCCCcccc--CCcCEEE
Q 004953 227 KLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMP-DLSRIPNLGYLDLSSNQLNGSIPPGRLS--LNITTIK 303 (722)
Q Consensus 227 ~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~ip~~~~~--~~L~~L~ 303 (722)
+|+.+.+..+- +. .....+.++.+|+.+.+..+ ++.... .+..+.+|+.+.+..+ ++ .++...+. .+|+.++
T Consensus 218 ~l~~i~~~~~~-~~-i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~ 292 (379)
T 4h09_A 218 NLKKITITSGV-TT-LGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVV 292 (379)
T ss_dssp SCSEEECCTTC-CE-ECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEE
T ss_pred ccceeeeccce-eE-EccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-ecccccccccccccccc
Confidence 77777776542 21 12345667777877777655 333222 3666777777777544 44 45554444 5788888
Q ss_pred ccCCcCcccCCccCCCCCCCCEEeCCCCcCcccCChhhhhhccCCCCcccEEEccCCcCCCC
Q 004953 304 LSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNI 365 (722)
Q Consensus 304 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~ls~N~l~~~ 365 (722)
+.++.++.....+|.++.+|+.+.|..+ ++..-..+|.. +.+|+.+.+..+ ++.+
T Consensus 293 l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~-----C~~L~~i~ip~~-v~~I 347 (379)
T 4h09_A 293 MDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKN-----CKALSTISYPKS-ITLI 347 (379)
T ss_dssp ECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-----CTTCCCCCCCTT-CCEE
T ss_pred ccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhC-----CCCCCEEEECCc-cCEE
Confidence 8777777777777888888888888654 54222333433 355666666543 5444
No 406
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=98.31 E-value=4.4e-07 Score=102.48 Aligned_cols=82 Identities=11% Similarity=-0.041 Sum_probs=58.9
Q ss_pred eecCCCeeEEEEE-eCCCcEEEEEEccCCC----------hhcHHHHHHHHHHHHhc-CCCcccceEEEEEeCCeEEEEe
Q 004953 632 IGQGGYGKVYKGI-LPDGTVVAVKRAQEGS----------LQGEKEFLTEIQFLSRL-HHRNLVSLVGYCDEEGEQVLPL 699 (722)
Q Consensus 632 iG~G~fG~Vy~g~-l~~g~~vAVK~l~~~~----------~~~~~~f~~E~~~l~~l-~H~Niv~l~g~~~~~~~~~Lv~ 699 (722)
.+.|+.|.++++. .--|..+|||.+.... ....++|.+|+++|.++ .|+||+++++++.+++..||||
T Consensus 242 ~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLVM 321 (569)
T 4azs_A 242 PYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLVM 321 (569)
T ss_dssp -C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEEE
T ss_pred cccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEEE
Confidence 4555555554433 2247889999985431 11235799999999999 7999999999999999999999
Q ss_pred cccccCcHHHHHHH
Q 004953 700 KLYIYLFIFQFSIK 713 (722)
Q Consensus 700 ey~~~G~L~~~l~~ 713 (722)
||++||+|.+++++
T Consensus 322 Eyv~G~~L~d~i~~ 335 (569)
T 4azs_A 322 EKLPGRLLSDMLAA 335 (569)
T ss_dssp ECCCSEEHHHHHHT
T ss_pred ecCCCCcHHHHHHh
Confidence 99999999888754
No 407
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.23 E-value=8.4e-08 Score=91.73 Aligned_cols=18 Identities=11% Similarity=-0.067 Sum_probs=8.7
Q ss_pred ccCCCCCCEEECCCC-CCc
Q 004953 102 IGRLSYLTILDFMWN-KIS 119 (722)
Q Consensus 102 ~~~l~~L~~L~Ls~n-~l~ 119 (722)
+...+.|++|+|++| .+.
T Consensus 32 l~~~~~L~~L~L~~n~~i~ 50 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIP 50 (185)
T ss_dssp HTTCTTCCEEECTTCTTCC
T ss_pred HhcCCCCCEEEecCCCCCC
Confidence 344445555555555 443
No 408
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.23 E-value=1.9e-07 Score=89.23 Aligned_cols=110 Identities=15% Similarity=0.211 Sum_probs=81.7
Q ss_pred cceeEEEcCCC-CCccc----cCccccCCCCCCEEECCCCCCccC----CCccccCCCCCCEEeccCCcCCCC----CCc
Q 004953 82 LHLRELQLLNL-NLSGN----LSPEIGRLSYLTILDFMWNKISGS----IPKEIGNIKSLELLLLNGNELTGS----LPE 148 (722)
Q Consensus 82 ~~l~~L~L~~~-~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~p~ 148 (722)
+.++.|+|++| .+... +...+...++|++|+|++|.|... +...+...++|++|+|++|.|... +..
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~ 115 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE 115 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence 57999999999 88753 344566788999999999999753 334456668899999999998743 345
Q ss_pred cCCCCCCCcEEEc--ccCCCCCCC----chhhcCcCCCCEEECCCcccc
Q 004953 149 ELGYLPKLDRIQI--DQNYISGSL----PKSFANLNKTRHFHMNNNSIS 191 (722)
Q Consensus 149 ~~~~l~~L~~L~L--~~N~l~~~~----p~~~~~l~~L~~L~L~~N~l~ 191 (722)
.+...++|++|+| ++|.+.... ...+...++|++|+|++|.+.
T Consensus 116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 5667788888888 778887542 334455577888888887764
No 409
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.20 E-value=3.9e-07 Score=91.72 Aligned_cols=80 Identities=20% Similarity=0.329 Sum_probs=48.3
Q ss_pred cCCCCCCEEeccCCcCCC--CCCccCCCCCCCcEEEcccCCCCCCCchhhcCcC--CCCEEECCCccccCCCCc------
Q 004953 127 GNIKSLELLLLNGNELTG--SLPEELGYLPKLDRIQIDQNYISGSLPKSFANLN--KTRHFHMNNNSISGQIPP------ 196 (722)
Q Consensus 127 ~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~--~L~~L~L~~N~l~~~~~~------ 196 (722)
.++++|++|+|++|+|++ .+|..+..+++|+.|+|++|+|++. ..+..+. +|++|+|++|.+.+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 456667777777777765 2334455667777777777777654 2233333 677777777777654442
Q ss_pred -CCCCCCccceee
Q 004953 197 -ELSRLPSLVHML 208 (722)
Q Consensus 197 -~l~~l~~L~~L~ 208 (722)
.+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 245566666655
No 410
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.17 E-value=1.1e-07 Score=95.92 Aligned_cols=105 Identities=18% Similarity=0.260 Sum_probs=75.3
Q ss_pred ccCCCCCCE--EeccCCcCC---CCCCccCCCCCCCcEEEcccCCCCC--CCchhhcCcCCCCEEECCCccccCCCCcCC
Q 004953 126 IGNIKSLEL--LLLNGNELT---GSLPEELGYLPKLDRIQIDQNYISG--SLPKSFANLNKTRHFHMNNNSISGQIPPEL 198 (722)
Q Consensus 126 ~~~l~~L~~--L~L~~n~l~---~~~p~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l 198 (722)
|...+.|+. ++++.|... ..++....++++|+.|+|++|+|++ .++..+..+++|+.|+|++|.+++. ..+
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l 214 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--REL 214 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhh
Confidence 444455555 667777433 1111122468899999999999987 4457788999999999999999865 334
Q ss_pred CCCC--ccceeecccCCCCCCCCc-------cCCCCCCCcEEE
Q 004953 199 SRLP--SLVHMLLDNNNLTGYLPP-------ELSELPKLLILQ 232 (722)
Q Consensus 199 ~~l~--~L~~L~L~~N~l~~~~~~-------~l~~l~~L~~L~ 232 (722)
..+. +|++|+|++|.+.+..|+ .+..+|+|+.||
T Consensus 215 ~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 215 DKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred hhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 4444 899999999999876652 366788998886
No 411
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*
Probab=98.04 E-value=3.4e-06 Score=85.15 Aligned_cols=74 Identities=19% Similarity=0.060 Sum_probs=54.6
Q ss_pred ccCCCeeecCCCeeEEEEEe-CCCcE--EEEEEccCCChh------------------------cHHHHHHHHHHHHhcC
Q 004953 626 FNSSTQIGQGGYGKVYKGIL-PDGTV--VAVKRAQEGSLQ------------------------GEKEFLTEIQFLSRLH 678 (722)
Q Consensus 626 f~~~~~iG~G~fG~Vy~g~l-~~g~~--vAVK~l~~~~~~------------------------~~~~f~~E~~~l~~l~ 678 (722)
+...+.||+|+||.||+|.. .+|+. ||||.++..... ....+.+|+++|.+++
T Consensus 49 ~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~ 128 (258)
T 1zth_A 49 TAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAK 128 (258)
T ss_dssp EEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHH
T ss_pred hhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999997 68888 999987543110 0135889999999998
Q ss_pred CCcc--cceEEEEEeCCeEEEEecccc
Q 004953 679 HRNL--VSLVGYCDEEGEQVLPLKLYI 703 (722)
Q Consensus 679 H~Ni--v~l~g~~~~~~~~~Lv~ey~~ 703 (722)
|+++ ...+++ +..+|||||+.
T Consensus 129 ~~~i~~p~~~~~----~~~~lVmE~~g 151 (258)
T 1zth_A 129 EAGVSVPQPYTY----MKNVLLMEFIG 151 (258)
T ss_dssp HTTCCCCCEEEE----ETTEEEEECCE
T ss_pred hCCCCCCeEEEc----CCCEEEEEecC
Confidence 8864 344432 35689999995
No 412
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=97.80 E-value=1.3e-05 Score=86.76 Aligned_cols=57 Identities=16% Similarity=0.061 Sum_probs=45.4
Q ss_pred hcCccCCCeeecCCCeeEEEEEe-CCCcEEEEEEccCCCh---hcHHHHHHHHHHHHhcCC
Q 004953 623 TNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSL---QGEKEFLTEIQFLSRLHH 679 (722)
Q Consensus 623 t~~f~~~~~iG~G~fG~Vy~g~l-~~g~~vAVK~l~~~~~---~~~~~f~~E~~~l~~l~H 679 (722)
+..|...+.||+|+||+||+|.. .+|+.||||+++.... ...+.|.+|+.++..++|
T Consensus 77 ~~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~ 137 (413)
T 3dzo_A 77 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRG 137 (413)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTT
T ss_pred ceeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhcc
Confidence 34566678999999999999994 5699999999874322 224679999999999987
No 413
>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A
Probab=97.77 E-value=7.1e-06 Score=86.86 Aligned_cols=80 Identities=14% Similarity=0.189 Sum_probs=52.9
Q ss_pred ccCCCeeecCCCeeEEEEEeCCCcEEEEEEccCCCh--------------hcHHH--------HHHHHHHHHhcCCCccc
Q 004953 626 FNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSL--------------QGEKE--------FLTEIQFLSRLHHRNLV 683 (722)
Q Consensus 626 f~~~~~iG~G~fG~Vy~g~l~~g~~vAVK~l~~~~~--------------~~~~~--------f~~E~~~l~~l~H~Niv 683 (722)
|.....||+|+||.||+|..++|+.||||.++.... ..... ..+|...|.++.+..+.
T Consensus 97 Y~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~gv~ 176 (397)
T 4gyi_A 97 YSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEGFP 176 (397)
T ss_dssp SEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred EEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 667789999999999999988899999998753210 00111 23466667776555443
Q ss_pred ceEEEEEeCCeEEEEecccccCcH
Q 004953 684 SLVGYCDEEGEQVLPLKLYIYLFI 707 (722)
Q Consensus 684 ~l~g~~~~~~~~~Lv~ey~~~G~L 707 (722)
...-+... ..+|||||++++.|
T Consensus 177 vp~p~~~~--~~~LVME~i~G~~L 198 (397)
T 4gyi_A 177 VPEPIAQS--RHTIVMSLVDALPM 198 (397)
T ss_dssp CCCEEEEE--TTEEEEECCSCEEG
T ss_pred CCeeeecc--CceEEEEecCCccH
Confidence 22222222 23699999998877
No 414
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.63 E-value=7.6e-06 Score=76.45 Aligned_cols=82 Identities=10% Similarity=0.077 Sum_probs=43.8
Q ss_pred ceeEEEcCCCCCccccCccccCCCCCCEEECCCCC-CccCCCccccCC----CCCCEEeccCCc-CCCCCCccCCCCCCC
Q 004953 83 HLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNK-ISGSIPKEIGNI----KSLELLLLNGNE-LTGSLPEELGYLPKL 156 (722)
Q Consensus 83 ~l~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l----~~L~~L~L~~n~-l~~~~p~~~~~l~~L 156 (722)
+|+.||++++.++...-..+..+++|++|+|++|. |++.--..+..+ ++|++|+|++|. ++..--..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 56677777666665555556666666666666663 554333333332 246666666553 443222233445555
Q ss_pred cEEEcccC
Q 004953 157 DRIQIDQN 164 (722)
Q Consensus 157 ~~L~L~~N 164 (722)
++|+|+++
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 55555554
No 415
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.56 E-value=1.3e-05 Score=74.87 Aligned_cols=34 Identities=12% Similarity=-0.008 Sum_probs=18.3
Q ss_pred CCCEEECCCCCCccCCCccccCCCCCCEEeccCC
Q 004953 107 YLTILDFMWNKISGSIPKEIGNIKSLELLLLNGN 140 (722)
Q Consensus 107 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 140 (722)
+|+.||++++.|+..--..+.++++|++|+|++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 4666666666655443344445555555555555
No 416
>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*
Probab=97.22 E-value=0.00074 Score=67.75 Aligned_cols=87 Identities=10% Similarity=0.034 Sum_probs=68.5
Q ss_pred hcCccCCCeeecCCCeeEEEEEeCCCcEEEEEEccCCChhcHHHHHHHHHHHHhcC-CCcccceEEEEEeCCeEEEEecc
Q 004953 623 TNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLH-HRNLVSLVGYCDEEGEQVLPLKL 701 (722)
Q Consensus 623 t~~f~~~~~iG~G~fG~Vy~g~l~~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~-H~Niv~l~g~~~~~~~~~Lv~ey 701 (722)
..+|......+.|+.+.||+... ++..+++|............+.+|++++..+. |..+.++++++...+..++||||
T Consensus 13 l~~~~~~~~~~g~s~~~v~~~~~-~~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv~e~ 91 (263)
T 3tm0_A 13 IEKYRCVKDTEGMSPAKVYKLVG-ENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLMSE 91 (263)
T ss_dssp HTTSEEEECCSCCSSSEEEEEEC-SSCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEEC
T ss_pred hccceeEeeccCCCCCeEEEEEC-CCCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCceEEEEEe
Confidence 34566566778888899999985 46899999986421122345889999999884 67788999999999999999999
Q ss_pred cccCcHHHH
Q 004953 702 YIYLFIFQF 710 (722)
Q Consensus 702 ~~~G~L~~~ 710 (722)
++|.+|.+.
T Consensus 92 i~G~~l~~~ 100 (263)
T 3tm0_A 92 ADGVLCSEE 100 (263)
T ss_dssp CSSEEHHHH
T ss_pred cCCeehhhc
Confidence 999998764
No 417
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.22 E-value=0.00037 Score=61.90 Aligned_cols=58 Identities=24% Similarity=0.344 Sum_probs=44.2
Q ss_pred EEeCCCCcCc-ccCChhhhhhccCCCCcccEEEccCCcCCCCCCCC--CCCCceEEEccCCcCcCCCC
Q 004953 325 RLFIANNSLS-GSIPSSIWQSRTLNATETFILDFQNNNLTNISGSF--NIPPNVTVRLRGNPFCLNTN 389 (722)
Q Consensus 325 ~L~L~~N~l~-~~ip~~~~~~~~l~~~~L~~L~ls~N~l~~~~~~~--~~~~l~~l~l~~N~l~~~~~ 389 (722)
.++.+++.++ ..+|..+. .+++.|+|++|+|+.+++.. .+++++.|+|++|||.|+|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp-------~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~ 72 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP-------VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR 72 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC-------TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred EEEeCCCCCccccCCCCCC-------cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence 5667777775 35665432 45788888888888887654 67889999999999999986
No 418
>3d1u_A Putative fructosamine-3-kinase; YP_290396.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.85A {Thermobifida fusca} PDB: 3f7w_A
Probab=97.22 E-value=0.0006 Score=69.62 Aligned_cols=76 Identities=18% Similarity=0.159 Sum_probs=61.6
Q ss_pred CCCeeecCCCeeEEEEEeCCCcEEEEEEccCCChhcHHHHHHHHHHHHhcCCC---cccceEEEEEeCCeEEEEeccccc
Q 004953 628 SSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHR---NLVSLVGYCDEEGEQVLPLKLYIY 704 (722)
Q Consensus 628 ~~~~iG~G~fG~Vy~g~l~~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~H~---Niv~l~g~~~~~~~~~Lv~ey~~~ 704 (722)
..+.+|.|.++.||+....+|..++||+...........|.+|++.|..++|. .+.+++++. ..++||||+++
T Consensus 19 ~~~~l~gG~~n~vy~v~~~dG~~~vvK~~~~~~~~~~~~~~~E~~~L~~L~~~~~v~vP~v~~~~----~~~lvme~l~g 94 (288)
T 3d1u_A 19 AVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWD----DRTLAMEWVDE 94 (288)
T ss_dssp EEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE----TTEEEEECCCC
T ss_pred ceeeeCCcchhheEEEEeCCCCeEEEEecCCCCcchhHHHHHHHHHHHHHHhcCCCCcCeEEEec----CcEEEEEeccc
Confidence 34679999999999999988999999997543333345799999999999876 577888764 36899999999
Q ss_pred CcH
Q 004953 705 LFI 707 (722)
Q Consensus 705 G~L 707 (722)
+.+
T Consensus 95 ~~~ 97 (288)
T 3d1u_A 95 RPP 97 (288)
T ss_dssp CCC
T ss_pred CCC
Confidence 875
No 419
>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6
Probab=96.92 E-value=0.00069 Score=67.63 Aligned_cols=73 Identities=19% Similarity=0.097 Sum_probs=57.7
Q ss_pred ecCCCeeEEEEEeCCCcEEEEEEccCCChhcHHHHHHHHHHHHhcCCCc--ccceEEEEEeCCeEEEEecccccCcHH
Q 004953 633 GQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRN--LVSLVGYCDEEGEQVLPLKLYIYLFIF 708 (722)
Q Consensus 633 G~G~fG~Vy~g~l~~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~H~N--iv~l~g~~~~~~~~~Lv~ey~~~G~L~ 708 (722)
+.|..+.||+....+|..++||..... ....+.+|++++..+++.+ +.+++++...++..++||||+++.++.
T Consensus 29 ~gg~~~~v~~~~~~~g~~~vlK~~~~~---~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~e~i~G~~l~ 103 (264)
T 1nd4_A 29 IGCSDAAVFRLSAQGRPVLFVKTDLSG---ALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDLL 103 (264)
T ss_dssp CTTSSCEEEEEECTTSCCEEEEEECSC---TTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECCSSEETT
T ss_pred cCCCCceEEEEecCCCCeEEEEeCCcc---cchhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEEEecCCcccC
Confidence 456669999998877888999987543 2235788999999986555 456888888778899999999998884
No 420
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.88 E-value=0.0015 Score=57.87 Aligned_cols=58 Identities=24% Similarity=0.414 Sum_probs=48.2
Q ss_pred cEEEccCCCCC-ccCCCccccCCcCEEEccCCcCcccCCccCCCCCCCCEEeCCCCcCcc
Q 004953 277 GYLDLSSNQLN-GSIPPGRLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSG 335 (722)
Q Consensus 277 ~~L~Ls~N~l~-~~ip~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 335 (722)
..++.+++.++ ..+|.. ++.+|+.|+|++|+|+...+..|..+++|+.|+|++|.+..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~-lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTA-FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TEEECCSSCCCTTTSCSC-CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CEEEeCCCCCccccCCCC-CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 36788888875 366755 66789999999999998888889999999999999998874
No 421
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.77 E-value=0.00033 Score=66.60 Aligned_cols=34 Identities=12% Similarity=0.110 Sum_probs=16.8
Q ss_pred CcCEEEccCCcCccc----CCccCCCCCCCCEEeCCCC
Q 004953 298 NITTIKLSNNKLTGT----IPSNFSGLPRLQRLFIANN 331 (722)
Q Consensus 298 ~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N 331 (722)
.|++|+|++|.|+.. +-+.+..-+.|++|+|++|
T Consensus 99 tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 99 SLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp SCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred ccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 455555555555432 1123444455666666543
No 422
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.64 E-value=0.00068 Score=64.44 Aligned_cols=82 Identities=21% Similarity=0.174 Sum_probs=41.9
Q ss_pred ceeEEEcCCC-CCccc----cCccccCCCCCCEEECCCCCCccCC----CccccCCCCCCEEeccCCcCCCC----CCcc
Q 004953 83 HLRELQLLNL-NLSGN----LSPEIGRLSYLTILDFMWNKISGSI----PKEIGNIKSLELLLLNGNELTGS----LPEE 149 (722)
Q Consensus 83 ~l~~L~L~~~-~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~----p~~~~~l~~L~~L~L~~n~l~~~----~p~~ 149 (722)
.|+.|+|+++ .|... +...+..-+.|+.|+|++|.|...- ...+..-+.|++|+|++|.|... +-+.
T Consensus 42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~a 121 (197)
T 1pgv_A 42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS 121 (197)
T ss_dssp SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHH
Confidence 4666666654 55432 2233444556666666666665322 22233445666666666666531 1223
Q ss_pred CCCCCCCcEEEcccC
Q 004953 150 LGYLPKLDRIQIDQN 164 (722)
Q Consensus 150 ~~~l~~L~~L~L~~N 164 (722)
+..-+.|++|+|++|
T Consensus 122 L~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 122 TLVTQSIVEFKADNQ 136 (197)
T ss_dssp TTTTCCCSEEECCCC
T ss_pred HhhCCceeEEECCCC
Confidence 344445666666543
No 423
>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}
Probab=94.39 E-value=0.041 Score=57.70 Aligned_cols=78 Identities=13% Similarity=0.261 Sum_probs=56.5
Q ss_pred CCeeecCCCeeEEEEEeCCCcEEEEEEcc--CCCh-hcHHHHHHHHHHHHhcC--CCcccceEEEEEeC---CeEEEEec
Q 004953 629 STQIGQGGYGKVYKGILPDGTVVAVKRAQ--EGSL-QGEKEFLTEIQFLSRLH--HRNLVSLVGYCDEE---GEQVLPLK 700 (722)
Q Consensus 629 ~~~iG~G~fG~Vy~g~l~~g~~vAVK~l~--~~~~-~~~~~f~~E~~~l~~l~--H~Niv~l~g~~~~~---~~~~Lv~e 700 (722)
.+.++.|.++.||+....+ ..+++|+.. .... .....+.+|++++..++ +..+.++++++.+. +..++|||
T Consensus 43 ~~~l~~G~sn~~y~v~~~~-~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~vme 121 (359)
T 3dxp_A 43 VEQFKGGQSNPTFKLVTPG-QTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFYIME 121 (359)
T ss_dssp EEECCC-CCSCEEEEECSS-CEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEEEEE
T ss_pred EEEcCCcccceEEEEEECC-ceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEEEEE
Confidence 3568899999999998754 678888775 3221 22346889999999987 45688999998776 45899999
Q ss_pred ccccCcH
Q 004953 701 LYIYLFI 707 (722)
Q Consensus 701 y~~~G~L 707 (722)
|+++..+
T Consensus 122 ~v~G~~l 128 (359)
T 3dxp_A 122 FVSGRVL 128 (359)
T ss_dssp CCCCBCC
T ss_pred ecCCeec
Confidence 9998876
No 424
>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}
Probab=93.80 E-value=0.083 Score=53.43 Aligned_cols=78 Identities=18% Similarity=0.179 Sum_probs=56.9
Q ss_pred ccCCCeeecCCCeeEEEEEeCCCcEEEEEEccCCChhcHHHHHHHHHHHHhcCCC---cccceEEEEEeCCeEEEEeccc
Q 004953 626 FNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHR---NLVSLVGYCDEEGEQVLPLKLY 702 (722)
Q Consensus 626 f~~~~~iG~G~fG~Vy~g~l~~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~H~---Niv~l~g~~~~~~~~~Lv~ey~ 702 (722)
+.....+|.|..+.||+.++.+|+.|.||+-..........|.+|++.|..+.-. -+.+.+++ . ..++||||+
T Consensus 17 v~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~--~--~~~lv~e~l 92 (288)
T 3f7w_A 17 VAAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGW--D--DRTLAMEWV 92 (288)
T ss_dssp EEEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEE--E--TTEEEEECC
T ss_pred eEEEEecCCCCCeEEEEEEECCCCEEEEEEeCCCCcchhhHHHHHHHHHHHHHhhCCCCcceEEec--c--CceEEEEee
Confidence 4445678999999999999999999999987544333345688999999887422 23455543 2 237899999
Q ss_pred ccCcH
Q 004953 703 IYLFI 707 (722)
Q Consensus 703 ~~G~L 707 (722)
+.+..
T Consensus 93 ~~~~~ 97 (288)
T 3f7w_A 93 DERPP 97 (288)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 88754
No 425
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=92.77 E-value=0.06 Score=35.74 Aligned_cols=27 Identities=22% Similarity=0.537 Sum_probs=17.4
Q ss_pred CCCCccceeeehHHHHHHHHHHHHHHH
Q 004953 555 SGISKAALAGIILGAIAGAVTISAIVS 581 (722)
Q Consensus 555 ~~~~~~~~~~ii~~~~~~~~~~~~~~~ 581 (722)
+..+...++++++|+++++++++.+++
T Consensus 6 ~~ls~GaIAGiVvG~v~gv~li~~l~~ 32 (38)
T 2k1k_A 6 RGLTGGEIVAVIFGLLLGAALLLGILV 32 (38)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCceeeeehHHHHHHHHHHHHHH
Confidence 345567788888888776655554443
No 426
>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}
Probab=91.78 E-value=0.34 Score=49.58 Aligned_cols=75 Identities=17% Similarity=0.105 Sum_probs=60.2
Q ss_pred CCeeecCCCeeEEEEEeCCCcEEEEEEccCCChhcHHHHHHHHHHHHhcC---CCcccceEEEEEeCCeEEEEecccccC
Q 004953 629 STQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLH---HRNLVSLVGYCDEEGEQVLPLKLYIYL 705 (722)
Q Consensus 629 ~~~iG~G~fG~Vy~g~l~~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~---H~Niv~l~g~~~~~~~~~Lv~ey~~~G 705 (722)
.+.|+.|.+..+|+... ++..+.||.-... ....|.+|++.|..+. ..-+.+.++++...+..++||||+++.
T Consensus 41 ~~~l~gG~~n~~y~v~~-~~~~~vlK~~~~~---~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~~lvme~l~G~ 116 (312)
T 3jr1_A 41 KEKLYSGEMNEIWLIND-EVQTVFVKINERS---YRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHSFLLLEALNKS 116 (312)
T ss_dssp EEEECCSSSSEEEEEES-SSCEEEEEEEEGG---GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEEEEEEECCCCC
T ss_pred eEEeCCccceeeeEEEE-CCCeEEEEeCCcc---cHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCceEEEEEeccCC
Confidence 45689999999999886 5678888876532 3456889999988873 356889999988888999999999998
Q ss_pred cH
Q 004953 706 FI 707 (722)
Q Consensus 706 ~L 707 (722)
.+
T Consensus 117 ~~ 118 (312)
T 3jr1_A 117 KN 118 (312)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 427
>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*
Probab=91.32 E-value=0.27 Score=52.16 Aligned_cols=76 Identities=18% Similarity=0.096 Sum_probs=49.9
Q ss_pred CeeecCCCeeEEEEEeC-CCcEEEEEEccCCCh-------hcHHHHHHHHHHHHhcCC--Cccc-ceEEEEEeCCeEEEE
Q 004953 630 TQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL-------QGEKEFLTEIQFLSRLHH--RNLV-SLVGYCDEEGEQVLP 698 (722)
Q Consensus 630 ~~iG~G~fG~Vy~g~l~-~g~~vAVK~l~~~~~-------~~~~~f~~E~~~l~~l~H--~Niv-~l~g~~~~~~~~~Lv 698 (722)
+.+|.|.++.||++... +++.++||....... .....+..|++++..+.+ +..| +++.+ +.+..++|
T Consensus 36 ~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~--d~~~~~lv 113 (397)
T 2olc_A 36 QEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAVTV 113 (397)
T ss_dssp EECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTEEE
T ss_pred EECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE--cCCccEEE
Confidence 57899999999999764 468899998643211 112356788888887732 4444 55543 34556899
Q ss_pred ecccccCcH
Q 004953 699 LKLYIYLFI 707 (722)
Q Consensus 699 ~ey~~~G~L 707 (722)
|||+++...
T Consensus 114 mE~l~g~~~ 122 (397)
T 2olc_A 114 MEDLSHLKI 122 (397)
T ss_dssp ECCCTTSEE
T ss_pred EEeCCCcch
Confidence 999987543
No 428
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=90.38 E-value=0.2 Score=34.18 Aligned_cols=9 Identities=11% Similarity=0.549 Sum_probs=5.0
Q ss_pred cceeeehHH
Q 004953 560 AALAGIILG 568 (722)
Q Consensus 560 ~~~~~ii~~ 568 (722)
..+++.++|
T Consensus 12 ~~Ia~~vVG 20 (44)
T 2jwa_A 12 TSIISAVVG 20 (44)
T ss_dssp HHHHHHHHH
T ss_pred cchHHHHHH
Confidence 345556666
No 429
>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*
Probab=89.99 E-value=1.4 Score=43.42 Aligned_cols=77 Identities=14% Similarity=0.114 Sum_probs=57.0
Q ss_pred eeecCCCe-eEEEEEeC-CCcEEEEEEccCCChhcHHHHHHHHHHHHhcC-CCcccceEEEEEeCCeEEEEecccccCcH
Q 004953 631 QIGQGGYG-KVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLH-HRNLVSLVGYCDEEGEQVLPLKLYIYLFI 707 (722)
Q Consensus 631 ~iG~G~fG-~Vy~g~l~-~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~-H~Niv~l~g~~~~~~~~~Lv~ey~~~G~L 707 (722)
.+..|..| .||+-... ++..+.||+-.. ....++.+|+..|..+. +--+.++++++..++..++||||+++.++
T Consensus 31 ~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~---~~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvme~l~G~~~ 107 (272)
T 4gkh_A 31 RDNVGQSGATIYRLYGKPNAPELFLKHGKG---SVANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTAIPGKTA 107 (272)
T ss_dssp EEECSSSSCEEEEEECCTTCCCEEEEEEET---HHHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCCSEEH
T ss_pred EccCCCcCCeEEEEEecCCCeEEEEEECCC---CCHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEEEeeCCccc
Confidence 44556655 68988754 456788887643 23457889999998874 33366889999999999999999999877
Q ss_pred HHH
Q 004953 708 FQF 710 (722)
Q Consensus 708 ~~~ 710 (722)
.+.
T Consensus 108 ~~~ 110 (272)
T 4gkh_A 108 FQV 110 (272)
T ss_dssp HHH
T ss_pred ccc
Confidence 553
No 430
>3r70_A Aminoglycoside phosphotransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE ADP PE3; 1.80A {Escherichia coli} PDB: 3r6z_A* 3uzr_A* 4dca_A* 3hav_A* 3ham_A*
Probab=88.04 E-value=0.86 Score=46.61 Aligned_cols=74 Identities=12% Similarity=0.061 Sum_probs=54.1
Q ss_pred CccCCCeeecCCCeeEEEEEeCCCcEEEEEEccCCChhcHHHHHHHHHHHHhcCC----CcccceEEEEEeCCeEEEEec
Q 004953 625 NFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHH----RNLVSLVGYCDEEGEQVLPLK 700 (722)
Q Consensus 625 ~f~~~~~iG~G~fG~Vy~g~l~~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~H----~Niv~l~g~~~~~~~~~Lv~e 700 (722)
.....+.++.|....||+. |..+++|..... .....+.+|.+++..+.+ ..+.+++++ +..++|||
T Consensus 38 ~i~~v~~l~~G~~n~vy~v----g~~~vlR~~~~~--~~~~~~~~E~~~L~~L~~~~~~~~vP~v~~~----~~~~lvme 107 (320)
T 3r70_A 38 KINELRYLSSGDDSDTFLC----NEQYVVKVPKRD--SVRISQKRELELYRFLENCKLSYQIPAVVYQ----SDRFNIMK 107 (320)
T ss_dssp CCSCEEEEEECSSEEEEEE----TTTEEEEEESSH--HHHHHHHHHHHHHHHHTTSCCSSBCCCEEEE----CSSCEEEE
T ss_pred ceEEEEeCCCCCCceEEEE----CCEEEEEeCCcH--HHHHHHHHHHHHHHHHHhcCCCCCcceEEec----CCcEEEEe
Confidence 3445567999999999998 667888876432 223468999999998876 223455554 56789999
Q ss_pred ccccCcHH
Q 004953 701 LYIYLFIF 708 (722)
Q Consensus 701 y~~~G~L~ 708 (722)
|+++..+.
T Consensus 108 ~i~G~~l~ 115 (320)
T 3r70_A 108 YIKGERIT 115 (320)
T ss_dssp CCCCBCCC
T ss_pred ecCCcccc
Confidence 99998875
No 431
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=87.35 E-value=0.071 Score=58.01 Aligned_cols=59 Identities=5% Similarity=0.064 Sum_probs=17.5
Q ss_pred CeeecCCCeeEEEEEeCC-CcEEEE------EEccCCCh--hcHHHHHHHHHHHHhcCCCcccceEEEEEe
Q 004953 630 TQIGQGGYGKVYKGILPD-GTVVAV------KRAQEGSL--QGEKEFLTEIQFLSRLHHRNLVSLVGYCDE 691 (722)
Q Consensus 630 ~~iG~G~fG~Vy~g~l~~-g~~vAV------K~l~~~~~--~~~~~f~~E~~~l~~l~H~Niv~l~g~~~~ 691 (722)
+.+| ||.||+|.+.. ..+||| |+.+.... +...+|.+|+.++.+.+|+|+++.+++...
T Consensus 148 ~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~~~e~~~~~~rea~l~~~~~H~niv~~h~f~~~ 215 (463)
T 3cxl_A 148 EHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKVH 215 (463)
T ss_dssp TTSS---BCCC---------CCBGGGC-----------------------------------CBCCCEEEE
T ss_pred ccCC---chhhhcccccccCCchhhhhccCccccccccccccccccccccccccccccccccCCCcceEEe
Confidence 4566 99999999854 368899 77765332 223469999999999999999999988754
No 432
>3ovc_A Hygromycin-B 4-O-kinase; aminoglycoside phosphotransferase, structural genomics, PSI- protein structure initiative; HET: HY0 PE4; 1.95A {Escherichia coli} PDB: 3tyk_A*
Probab=86.00 E-value=2 Score=44.78 Aligned_cols=73 Identities=5% Similarity=0.019 Sum_probs=56.5
Q ss_pred CCeeecCCCeeEEEEEeCCCcEEEEEEccCCChhcHHHHHHHHHHHHhcCCCc--ccceEEEEEeC-CeEEEEecccccC
Q 004953 629 STQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRN--LVSLVGYCDEE-GEQVLPLKLYIYL 705 (722)
Q Consensus 629 ~~~iG~G~fG~Vy~g~l~~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~H~N--iv~l~g~~~~~-~~~~Lv~ey~~~G 705 (722)
.+.++.|....+|+... +|..+++|.-... ..+.+|+.++..+.... +.++++++... +..++||||+++.
T Consensus 46 i~~l~gG~~n~~y~v~~-~g~~~vlK~~~~~-----~~~~~E~~~l~~L~~~gvpvP~vl~~~~~~~g~~~lv~e~l~G~ 119 (362)
T 3ovc_A 46 LMQLSEGEESRAFSFDV-GGRGYVLRVNSCA-----DGFYKDRYVYRHFASAALPIPEVLDIGEFSESLTYCISRRAQGV 119 (362)
T ss_dssp EEEEEECSSEEEEEEEE-TTEEEEEEEESCC-----HHHHHHHHHHHHHCCSSSCCCCEEEEEESSSSCEEEEEECCCSE
T ss_pred EEECCCCCcceEEEEEE-CCcEEEEEeCCch-----hhHHHHHHHHHHHHhcCCCCceEEEeccCCCCCeEEEEEecCCC
Confidence 45688999999999886 5788899877432 25889999999886544 46778877764 6789999999986
Q ss_pred cH
Q 004953 706 FI 707 (722)
Q Consensus 706 ~L 707 (722)
.+
T Consensus 120 ~l 121 (362)
T 3ovc_A 120 TL 121 (362)
T ss_dssp ET
T ss_pred Cc
Confidence 65
No 433
>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*
Probab=85.30 E-value=2.4 Score=42.98 Aligned_cols=74 Identities=19% Similarity=0.134 Sum_probs=55.0
Q ss_pred CeeecCCCeeEEEEEeCCCcEEEEEEccCCChhcHHHHHHHHHHHHhcCCC---cccceEEEEE-eCCeEEEEecccccC
Q 004953 630 TQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHR---NLVSLVGYCD-EEGEQVLPLKLYIYL 705 (722)
Q Consensus 630 ~~iG~G~fG~Vy~g~l~~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~H~---Niv~l~g~~~-~~~~~~Lv~ey~~~G 705 (722)
..++.|....||+. |..++||.-. .......+.+|+++|..+.+. -+.+.++++. ..+..++||||++|.
T Consensus 25 ~~l~~G~~n~v~~v----g~~~VlR~~~--~~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e~i~G~ 98 (306)
T 3tdw_A 25 ESLGEGFRNYAILV----NGDWVFRFPK--SQQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRKVQGQ 98 (306)
T ss_dssp EEEEECSSEEEEEE----TTTEEEEEES--SHHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEECCCSE
T ss_pred eecCCCcceeEEEE----CCEEEEEecC--CchHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEeccCCe
Confidence 45788888899987 5667888743 222345789999999999753 3567777774 456688999999998
Q ss_pred cHHH
Q 004953 706 FIFQ 709 (722)
Q Consensus 706 ~L~~ 709 (722)
.+.+
T Consensus 99 ~l~~ 102 (306)
T 3tdw_A 99 ILGE 102 (306)
T ss_dssp ECHH
T ss_pred ECch
Confidence 8765
No 434
>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*
Probab=79.14 E-value=0.79 Score=47.59 Aligned_cols=78 Identities=4% Similarity=-0.065 Sum_probs=54.0
Q ss_pred Cee-ecCCCeeEEEEEeC-------CCcEEEEEEccCCC---hhcHHHHHHHHHHHHhcCC---CcccceEEEEEeC---
Q 004953 630 TQI-GQGGYGKVYKGILP-------DGTVVAVKRAQEGS---LQGEKEFLTEIQFLSRLHH---RNLVSLVGYCDEE--- 692 (722)
Q Consensus 630 ~~i-G~G~fG~Vy~g~l~-------~g~~vAVK~l~~~~---~~~~~~f~~E~~~l~~l~H---~Niv~l~g~~~~~--- 692 (722)
+.| +.|....+|+.... ++..+++|.-.... ......+.+|++++..++. -.+.++++++.+.
T Consensus 26 ~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~~~ 105 (357)
T 3ats_A 26 SGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGDVL 105 (357)
T ss_dssp EEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSSTTT
T ss_pred EECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCCcc
Confidence 456 78888999998764 26678888764322 0012357788888887743 3567888887654
Q ss_pred CeEEEEecccccCcH
Q 004953 693 GEQVLPLKLYIYLFI 707 (722)
Q Consensus 693 ~~~~Lv~ey~~~G~L 707 (722)
+..++||||+++..+
T Consensus 106 g~~~~v~e~l~G~~l 120 (357)
T 3ats_A 106 GTPFFLMDYVEGVVP 120 (357)
T ss_dssp SSCEEEEECCCCBCC
T ss_pred CCceEEEEecCCCCh
Confidence 457899999998654
No 435
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=77.92 E-value=2.2 Score=29.22 Aligned_cols=18 Identities=11% Similarity=0.281 Sum_probs=10.2
Q ss_pred ceeeehHHHHHHHHHHHH
Q 004953 561 ALAGIILGAIAGAVTISA 578 (722)
Q Consensus 561 ~~~~ii~~~~~~~~~~~~ 578 (722)
-..+|++|++.+++++++
T Consensus 9 ~~~~IA~gVVgGv~~~~i 26 (44)
T 2ks1_B 9 KIPSIATGMVGALLLLLV 26 (44)
T ss_dssp CSSSSTHHHHHHHHHHHH
T ss_pred CcceEEeehhHHHHHHHH
Confidence 356777776665444333
No 436
>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A
Probab=75.88 E-value=2.5 Score=42.61 Aligned_cols=75 Identities=13% Similarity=0.096 Sum_probs=51.4
Q ss_pred CCeeecCCCeeEEEEEeCCCcEEEEEEccCCChhcHHHHHHHHHHHHhcC-CCc--ccceEEEEEeCC---eEEEEeccc
Q 004953 629 STQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLH-HRN--LVSLVGYCDEEG---EQVLPLKLY 702 (722)
Q Consensus 629 ~~~iG~G~fG~Vy~g~l~~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~-H~N--iv~l~g~~~~~~---~~~Lv~ey~ 702 (722)
.+.++.|....||+.. ..+++|.-... .....+.+|+++|..+. |.. +.+.++++...+ ..++||||+
T Consensus 25 i~~~~~G~~n~v~~v~----~~~vlR~~~~~--~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~vm~~i 98 (304)
T 3sg8_A 25 IEISGEGNDCIAYEIN----RDFIFKFPKHS--RGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGFTKI 98 (304)
T ss_dssp CCEEEECSSEEEEEST----TSEEEEEESSH--HHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEEEECC
T ss_pred eEecCCCCcceEEEEC----CEEEEEecCCc--chHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEEEccc
Confidence 4568999999999863 45888875432 23457899999999883 333 345555443332 358899999
Q ss_pred ccCcHHH
Q 004953 703 IYLFIFQ 709 (722)
Q Consensus 703 ~~G~L~~ 709 (722)
+|..+.+
T Consensus 99 ~G~~l~~ 105 (304)
T 3sg8_A 99 KGVPLTP 105 (304)
T ss_dssp CCEECCH
T ss_pred CCeECCc
Confidence 9987754
No 437
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=74.35 E-value=2.5 Score=28.89 Aligned_cols=14 Identities=29% Similarity=0.304 Sum_probs=7.6
Q ss_pred eeeehHHHHHHHHH
Q 004953 562 LAGIILGAIAGAVT 575 (722)
Q Consensus 562 ~~~ii~~~~~~~~~ 575 (722)
..+|++|++.++++
T Consensus 9 ~~aIA~gVVgGv~~ 22 (44)
T 2l2t_A 9 TPLIAAGVIGGLFI 22 (44)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred cceEEEeehHHHHH
Confidence 45566666554444
No 438
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=72.41 E-value=1.6 Score=29.34 Aligned_cols=14 Identities=29% Similarity=0.446 Sum_probs=6.3
Q ss_pred eehHHHHHHHHHHH
Q 004953 564 GIILGAIAGAVTIS 577 (722)
Q Consensus 564 ~ii~~~~~~~~~~~ 577 (722)
++++++++++++++
T Consensus 14 ~I~~~vv~Gv~ll~ 27 (41)
T 2k9y_A 14 AVIGGVAVGVVLLL 27 (41)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred EEEeehhHHHHHHH
Confidence 34444444444433
No 439
>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}
Probab=71.72 E-value=6.1 Score=40.16 Aligned_cols=72 Identities=19% Similarity=0.119 Sum_probs=40.9
Q ss_pred eeecCCCeeEEEEEeCCCcEEEEEEccCCChhcHHHHHHHHHHHHhc-----CCCcccceE-E--EEEeCCeEEEEeccc
Q 004953 631 QIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRL-----HHRNLVSLV-G--YCDEEGEQVLPLKLY 702 (722)
Q Consensus 631 ~iG~G~fG~Vy~g~l~~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l-----~H~Niv~l~-g--~~~~~~~~~Lv~ey~ 702 (722)
.++.|..+.||+....+| .+++|+.... ..+...|++++..+ ..|.++.-. | +....+..++||||+
T Consensus 39 ~l~gG~~n~~~~v~~~~~-~~vlk~~~~~----~~~~~~e~~~l~~L~~~g~~vp~~~~~~~g~~~~~~~~~~~~l~~~i 113 (346)
T 2q83_A 39 VIQGNQMALVWKVHTDSG-AVCLKRIHRP----EKKALFSIFAQDYLAKKGMNVPGILPNKKGSLYSKHGSFLFVVYDWI 113 (346)
T ss_dssp ECC----CEEEEEEETTE-EEEEEEECSC----HHHHHHHHHHHHHHHHHTCSSCCBCCCTTSCSCEEETTEEEEEEECC
T ss_pred eccccccCcEEEEEeCCC-CEEEEecCCC----HHHHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCEEEEEEEee
Confidence 455567889999987555 5889988652 22333445544443 234444310 1 123467789999999
Q ss_pred ccCcH
Q 004953 703 IYLFI 707 (722)
Q Consensus 703 ~~G~L 707 (722)
++..+
T Consensus 114 ~G~~~ 118 (346)
T 2q83_A 114 EGRPF 118 (346)
T ss_dssp CCBCC
T ss_pred cCccC
Confidence 98754
No 440
>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6
Probab=68.84 E-value=14 Score=37.15 Aligned_cols=75 Identities=16% Similarity=0.069 Sum_probs=49.5
Q ss_pred eeecCCCeeEEEEEeCCCcEEEEEEccCCChhcHHHHHHHHHHHHhcCCC--cccceEEE-----EEeCCeEEEEecccc
Q 004953 631 QIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHR--NLVSLVGY-----CDEEGEQVLPLKLYI 703 (722)
Q Consensus 631 ~iG~G~fG~Vy~g~l~~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~H~--Niv~l~g~-----~~~~~~~~Lv~ey~~ 703 (722)
.++ |....||+....+|..+++|...... ....++..|..++..++.. .+++++.. ....+..++||||++
T Consensus 33 ~l~-g~~n~~y~v~~~~g~~~vlK~~~~~~-~~~~~~~~E~~~~~~L~~~g~~vp~~~~~~g~~~~~~~g~~~~l~~~i~ 110 (328)
T 1zyl_A 33 PLN-SYENRVYQFQDEDRRRFVVKFYRPER-WTADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPSVG 110 (328)
T ss_dssp EEC-CSSSEEEEECCTTCCCEEEEEECTTT-SCHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEEEECCC
T ss_pred eec-CcccceEEEEcCCCCEEEEEEcCCCC-CCHHHHHHHHHHHHHHHHcCCeecceeecCCcEEEEECCEEEEEEEecC
Confidence 466 77889999887778789999986432 1234566788777766322 23444432 123566788999999
Q ss_pred cCcH
Q 004953 704 YLFI 707 (722)
Q Consensus 704 ~G~L 707 (722)
+..+
T Consensus 111 G~~~ 114 (328)
T 1zyl_A 111 GRQF 114 (328)
T ss_dssp CEEC
T ss_pred CCCC
Confidence 8654
No 441
>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6
Probab=51.84 E-value=23 Score=35.43 Aligned_cols=91 Identities=7% Similarity=0.051 Sum_probs=50.4
Q ss_pred ccHHHHHHhhcCccC-----CCeeecCCCeeEEEEEeCCCcEEEEEEccCCChhcHHHHHHHHHHHHhcCCCc--ccceE
Q 004953 614 FTYGEMALATNNFNS-----STQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRN--LVSLV 686 (722)
Q Consensus 614 ~~~~~~~~~t~~f~~-----~~~iG~G~fG~Vy~g~l~~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~H~N--iv~l~ 686 (722)
++.+++......|.. .+.|+.|....+|+....+| .+++|...... ...++..|++++..++... +.+++
T Consensus 7 ~~~~~l~~~l~~~~~~~~~~~~~i~~G~~n~~~~v~~~~g-~~vlk~~~~~~--~~~~l~~e~~~l~~L~~~g~~vP~~~ 83 (322)
T 2ppq_A 7 ITEDELRNFLTQYDVGSLTSYKGIAEGVENSNFLLHTTKD-PLILTLYEKRV--EKNDLPFFLGLMQHLAAKGLSCPLPL 83 (322)
T ss_dssp CCHHHHHHHHTTBCCCCEEEEEEECC---EEEEEEEESSC-CEEEEEECC-----CCHHHHHHHHHHHHHHTTCCCCCBC
T ss_pred CCHHHHHHHHHhCCCCcceEeeccCCCcccceEEEEeCCc-cEEEEEeCCCC--CHHHHHHHHHHHHHHHHCCCCCCccc
Confidence 444555444444543 23466788889999987666 57788876421 1234556777776663222 23333
Q ss_pred EE------EEeCCeEEEEecccccCcH
Q 004953 687 GY------CDEEGEQVLPLKLYIYLFI 707 (722)
Q Consensus 687 g~------~~~~~~~~Lv~ey~~~G~L 707 (722)
.. ....+..++++||+++..+
T Consensus 84 ~~~~g~~~~~~~g~~~~l~~~l~G~~~ 110 (322)
T 2ppq_A 84 PRKDGELLGELSGRPAALISFLEGMWL 110 (322)
T ss_dssp CBTTCCSCEEETTEEEEEEECCCCBCC
T ss_pred CCCCCCEEEEECCEEEEEEEeCCCcCC
Confidence 21 1224667899999998654
No 442
>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8
Probab=51.75 E-value=22 Score=37.74 Aligned_cols=72 Identities=17% Similarity=0.143 Sum_probs=49.0
Q ss_pred CeeecCCCeeEEEEEeCC--------CcEEEEEEccCCChhcHHHHHHHHHHHHhcCCCcc-cceEEEEEeCCeEEEEec
Q 004953 630 TQIGQGGYGKVYKGILPD--------GTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNL-VSLVGYCDEEGEQVLPLK 700 (722)
Q Consensus 630 ~~iG~G~fG~Vy~g~l~~--------g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~H~Ni-v~l~g~~~~~~~~~Lv~e 700 (722)
+.|+.|....+|+...++ +..+.+|+-... .....+.+|..++..+...++ .++++.+. + .+|+|
T Consensus 79 ~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~--~~~~~li~E~~~l~~L~~~g~~P~l~~~~~--~--g~v~e 152 (429)
T 1nw1_A 79 SRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNP--ETESHLVAESVIFTLLSERHLGPKLYGIFS--G--GRLEE 152 (429)
T ss_dssp EEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSC--CCHHHHHHHHHHHHHHHHTTSSSCEEEEET--T--EEEEC
T ss_pred EEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCC--CcHHHHHHHHHHHHHHHhCCCCCcEEEEeC--C--CEEEE
Confidence 457778889999998753 478888887432 112456689998888744444 56776653 2 38999
Q ss_pred ccccCcH
Q 004953 701 LYIYLFI 707 (722)
Q Consensus 701 y~~~G~L 707 (722)
|+++-.+
T Consensus 153 ~l~G~~l 159 (429)
T 1nw1_A 153 YIPSRPL 159 (429)
T ss_dssp CCCEEEC
T ss_pred EeCCccc
Confidence 9986444
No 443
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=51.18 E-value=13 Score=25.35 Aligned_cols=9 Identities=33% Similarity=0.756 Sum_probs=3.8
Q ss_pred hHHHHHHHH
Q 004953 566 ILGAIAGAV 574 (722)
Q Consensus 566 i~~~~~~~~ 574 (722)
+++.+++++
T Consensus 14 Ia~~vVGvl 22 (44)
T 2jwa_A 14 IISAVVGIL 22 (44)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 444444433
No 444
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=51.04 E-value=10 Score=27.94 Aligned_cols=20 Identities=25% Similarity=0.488 Sum_probs=11.6
Q ss_pred ehHHHHHHHHHHHHHHHHHH
Q 004953 565 IILGAIAGAVTISAIVSLLI 584 (722)
Q Consensus 565 ii~~~~~~~~~~~~~~~~~~ 584 (722)
+++|.++++++++.+.++++
T Consensus 12 ivlGg~~~lll~~glcI~cc 31 (70)
T 2klu_A 12 IVLGGVAGLLLFIGLGIFFS 31 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHh
Confidence 56677666665555554433
No 445
>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}
Probab=47.88 E-value=23 Score=37.30 Aligned_cols=72 Identities=10% Similarity=0.099 Sum_probs=45.7
Q ss_pred CeeecCCCeeEEEEEeCCCcEEEEEEccCC----Ch-----hcHHHHHHHHHHHH-hcCCCcccceEEEEEeCCeEEEEe
Q 004953 630 TQIGQGGYGKVYKGILPDGTVVAVKRAQEG----SL-----QGEKEFLTEIQFLS-RLHHRNLVSLVGYCDEEGEQVLPL 699 (722)
Q Consensus 630 ~~iG~G~fG~Vy~g~l~~g~~vAVK~l~~~----~~-----~~~~~f~~E~~~l~-~l~H~Niv~l~g~~~~~~~~~Lv~ 699 (722)
+.+|.|..+.||+... ++..++||..... .. .....+..|+..+. ...+..+.+++++. ++..++||
T Consensus 40 ~~l~~G~~n~vyrv~~-~~~~~vvK~~~p~~~~~~~~~~~~~~~~~~E~e~l~~~~~~~~~~vP~v~~~~--~~~~~lv~ 116 (420)
T 2pyw_A 40 KEVGDGNLNFVFIVVG-SSGSLVIKQALPYIRCIGESWPMTKERAYFEATTLRKHGNLSPDHVPEVYHFD--RTMALIGM 116 (420)
T ss_dssp EECCCSSSCEEEEEEC-SSCEEEEEECCSBCTTTCTTSBCCTTHHHHHHHHHHHHHHHSGGGSCCEEEEE--TTTTEEEE
T ss_pred EEccCCCcEEEEEEEc-CCceEEEEECchhhcccCcccccchhHHHHHHHHHHHHHhhCCCCCCeEEEEC--CCccEEEE
Confidence 5688999999999975 5678999943211 01 12234555543332 22334566777665 56779999
Q ss_pred ccc-cc
Q 004953 700 KLY-IY 704 (722)
Q Consensus 700 ey~-~~ 704 (722)
||+ ++
T Consensus 117 e~l~~g 122 (420)
T 2pyw_A 117 RYLEPP 122 (420)
T ss_dssp CCCCTT
T ss_pred eecCCc
Confidence 999 76
No 446
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=45.09 E-value=49 Score=26.92 Aligned_cols=36 Identities=11% Similarity=0.092 Sum_probs=13.8
Q ss_pred cCCCCCCCcEEEcccCCCCCCCchhhcCcCCCCEEEC
Q 004953 149 ELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHM 185 (722)
Q Consensus 149 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 185 (722)
.|.++.+|+.+.|-.+ ++.+....|.++.+|+.+.+
T Consensus 15 aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~ 50 (100)
T 2lz0_A 15 LFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLIL 50 (100)
T ss_dssp TTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEE
T ss_pred HhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEE
Confidence 3444444444444332 22223333444444444443
No 447
>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*
Probab=43.78 E-value=30 Score=35.93 Aligned_cols=72 Identities=19% Similarity=0.157 Sum_probs=43.2
Q ss_pred eeecCCCeeEEEEEeCC--------CcEEEEEEccCCChhcHHHHHHHHHHHHhcCCCcc-cceEEEEEeCCeEEEEecc
Q 004953 631 QIGQGGYGKVYKGILPD--------GTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNL-VSLVGYCDEEGEQVLPLKL 701 (722)
Q Consensus 631 ~iG~G~fG~Vy~g~l~~--------g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~H~Ni-v~l~g~~~~~~~~~Lv~ey 701 (722)
.+..|-...+|+...++ +..+.+|+-... ........+|.+++..+.-..+ .++++++. + .+||||
T Consensus 57 ~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~~-~~~~~~~~rE~~vl~~L~~~gv~P~ll~~~~--~--g~v~e~ 131 (379)
T 3feg_A 57 PVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAI-LQGVDSLVLESVMFAILAERSLGPQLYGVFP--E--GRLEQY 131 (379)
T ss_dssp EC-----CCEEEEECCTTSCCCSSCCSEEEEEECC----CCHHHHHHHHHHHHHHHHTTSSCCEEEEET--T--EEEEEC
T ss_pred EcCCcccccEEEEEeCCCccccCCCCCeEEEEECCCc-cchHHHHHHHHHHHHHHHhcCCCCeEEEEcC--C--ccEEEE
Confidence 45556677889888742 468888875322 1234566789999887743233 56666653 2 289999
Q ss_pred cccCcH
Q 004953 702 YIYLFI 707 (722)
Q Consensus 702 ~~~G~L 707 (722)
+++..+
T Consensus 132 i~G~~l 137 (379)
T 3feg_A 132 IPSRPL 137 (379)
T ss_dssp CSEEEC
T ss_pred ecCccC
Confidence 998655
No 448
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=43.06 E-value=27 Score=22.98 Aligned_cols=29 Identities=28% Similarity=0.350 Sum_probs=15.5
Q ss_pred CccceeeehHHHHHHHHHHHHHHHH-HHhh
Q 004953 558 SKAALAGIILGAIAGAVTISAIVSL-LIVR 586 (722)
Q Consensus 558 ~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~ 586 (722)
+...-.+.++|++++.++.++++.. .++.
T Consensus 5 ~~~ls~GaIAGiVvG~v~gv~li~~l~~~~ 34 (38)
T 2k1k_A 5 SRGLTGGEIVAVIFGLLLGAALLLGILVFR 34 (38)
T ss_dssp STTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCceeeeehHHHHHHHHHHHHHHHH
Confidence 3344456677777776554444443 4443
No 449
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=37.13 E-value=20 Score=22.72 Aligned_cols=19 Identities=37% Similarity=0.606 Sum_probs=10.9
Q ss_pred ccceeeehHHHHHHHHHHH
Q 004953 559 KAALAGIILGAIAGAVTIS 577 (722)
Q Consensus 559 ~~~~~~ii~~~~~~~~~~~ 577 (722)
...++++++|.+++.++++
T Consensus 6 ~gaIaGIVvgdi~~t~~i~ 24 (33)
T 2l34_A 6 PGVLAGIVVGDLVLTVLIA 24 (33)
T ss_dssp THHHHHHHHHHHHHHHHHH
T ss_pred cceEEeEeHHHHHHHHHHH
Confidence 3456677777666544333
No 450
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=36.87 E-value=59 Score=26.38 Aligned_cols=45 Identities=7% Similarity=0.042 Sum_probs=22.5
Q ss_pred CccCCCccccCCCCCCEEeccCCcCCCCCCccCCCCCCCcEEEccc
Q 004953 118 ISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQ 163 (722)
Q Consensus 118 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 163 (722)
++.+...+|.++++|+.+.+-.+ ++.+-..+|.++.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 33334445555555555555433 3334445555555565555543
No 451
>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}
Probab=35.43 E-value=1.1e+02 Score=30.57 Aligned_cols=76 Identities=7% Similarity=-0.007 Sum_probs=40.3
Q ss_pred eeecCCCee-EEEEEeCCCcEEEEEEccCCChhcHHHHHHHHHHHHhcCC--CcccceEEEEEeCCeEEEEecccccCcH
Q 004953 631 QIGQGGYGK-VYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHH--RNLVSLVGYCDEEGEQVLPLKLYIYLFI 707 (722)
Q Consensus 631 ~iG~G~fG~-Vy~g~l~~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~H--~Niv~l~g~~~~~~~~~Lv~ey~~~G~L 707 (722)
.++.|.... +|+....+|..+.+|.-..... .++..|+.++..+.. -.+.+++.++...+ +++||++.+..+
T Consensus 25 ~l~gg~s~~~~~r~~~~~~~~~vlk~~~~~~~---~~~~~e~~~l~~L~~~g~~vP~v~~~d~~~g--~ll~e~l~~~~l 99 (333)
T 3csv_A 25 PLAGDASSRRYQRLRSPTGAKAVLMDWSPEEG---GDTQPFVDLAQYLRNLDISAPEIYAEEHARG--LLLIEDLGDALF 99 (333)
T ss_dssp C--------CCEEEECTTCCEEEEEECCTTTT---CCSHHHHHHHHHHHHTTCBCCCEEEEETTTT--EEEECCCCSCBH
T ss_pred ECCCCCCCceEEEEEcCCCCeEEEEECCCCCC---ccccHHHHHHHHHHhCCCCCCceeeecCCCC--EEEEeeCCCcch
Confidence 344444433 6677654467777776543211 223456666665532 23566777654444 789999987777
Q ss_pred HHHH
Q 004953 708 FQFS 711 (722)
Q Consensus 708 ~~~l 711 (722)
.+++
T Consensus 100 ~~~l 103 (333)
T 3csv_A 100 TEVI 103 (333)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6554
No 452
>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*
Probab=33.69 E-value=76 Score=32.10 Aligned_cols=67 Identities=6% Similarity=-0.068 Sum_probs=41.6
Q ss_pred cCCCeeEEEEEeCCCcEEEEEEccCCChhcHHHHHHHHHHHHhcC---CCcccceEEE------EEeCCeEEEEeccccc
Q 004953 634 QGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLH---HRNLVSLVGY------CDEEGEQVLPLKLYIY 704 (722)
Q Consensus 634 ~G~fG~Vy~g~l~~g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~---H~Niv~l~g~------~~~~~~~~Lv~ey~~~ 704 (722)
.|....||+....+| .+++|+...... ..|++++..+. -+.+.+.+.. +...+..++||||+++
T Consensus 33 ~g~~N~vy~v~~~~g-~~vLK~~~~~~~------~~E~~~l~~L~~~g~~~vp~pi~~~~G~~~~~~~g~~~~l~~~i~G 105 (339)
T 3i1a_A 33 ADTNAFAYQADSESK-SYFIKLKYGYHD------EINLSIIRLLHDSGIKEIIFPIHTLEAKLFQQLKHFKIIAYPFIHA 105 (339)
T ss_dssp SCSSCEEEEEECSSC-EEEEEEEECSSC------CHHHHHHHHHHHTTCCSSCCCCCCTTSCSSEECSSEEEEEEECCCC
T ss_pred CccccceEEEEeCCC-CEEEEEecCccc------hHHHHHHHHHHhcCCcccccceecCCCCEEEEECCEEEEEEeccCC
Confidence 333678999987777 899998765432 23444444442 1224444422 2335778999999998
Q ss_pred CcH
Q 004953 705 LFI 707 (722)
Q Consensus 705 G~L 707 (722)
..+
T Consensus 106 ~~~ 108 (339)
T 3i1a_A 106 PNG 108 (339)
T ss_dssp CBT
T ss_pred CcC
Confidence 766
No 453
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=33.49 E-value=27 Score=27.17 Aligned_cols=13 Identities=8% Similarity=0.235 Sum_probs=5.8
Q ss_pred eeehHHHHHHHHH
Q 004953 563 AGIILGAIAGAVT 575 (722)
Q Consensus 563 ~~ii~~~~~~~~~ 575 (722)
.+++.|+++++++
T Consensus 11 ~~Iv~gvi~gill 23 (79)
T 2knc_B 11 LVVLLSVMGAILL 23 (79)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHH
Confidence 3444455444433
No 454
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=31.72 E-value=40 Score=22.03 Aligned_cols=20 Identities=25% Similarity=0.527 Sum_probs=11.1
Q ss_pred ceeeehHHHHHHHHHHHHHH
Q 004953 561 ALAGIILGAIAGAVTISAIV 580 (722)
Q Consensus 561 ~~~~ii~~~~~~~~~~~~~~ 580 (722)
.++.++.++.++++-.++++
T Consensus 11 ~i~lII~~vmaGiIG~IllI 30 (40)
T 1afo_A 11 EITLIIFGVMAGVIGTILLI 30 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 55666667666654443333
No 455
>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*
Probab=31.09 E-value=38 Score=34.76 Aligned_cols=73 Identities=12% Similarity=0.015 Sum_probs=42.8
Q ss_pred CeeecCCCeeEEEEEeCC---------CcEEEEEEccCCChhcHHHHHHHHHHHHhcCCCcc-cceEEEEEeCCeEEEEe
Q 004953 630 TQIGQGGYGKVYKGILPD---------GTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNL-VSLVGYCDEEGEQVLPL 699 (722)
Q Consensus 630 ~~iG~G~fG~Vy~g~l~~---------g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~H~Ni-v~l~g~~~~~~~~~Lv~ 699 (722)
..++.|....+|+....+ +..+.+|.-..... ...+...|.+++..+....+ .++++.. .+ ++||
T Consensus 39 ~~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~~~-~~~~~~~E~~~l~~L~~~g~~P~~~~~~--~~--~~v~ 113 (369)
T 3c5i_A 39 KQILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKHVD-ELYNTISEFEVYKTMSKYKIAPQLLNTF--NG--GRIE 113 (369)
T ss_dssp EEC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTTGG-GTSCHHHHHHHHHHHHHTTSSCCEEEEE--TT--EEEE
T ss_pred EEeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCCcc-ceecHHHHHHHHHHHHhcCCCCceEEec--CC--cEEE
Confidence 346677778899988754 26788887644321 11123577878877743344 4666543 33 6899
Q ss_pred cccccCcH
Q 004953 700 KLYIYLFI 707 (722)
Q Consensus 700 ey~~~G~L 707 (722)
||+++..+
T Consensus 114 e~i~G~~l 121 (369)
T 3c5i_A 114 EWLYGDPL 121 (369)
T ss_dssp ECCCSEEC
T ss_pred EEecCCcC
Confidence 99997544
No 456
>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}
Probab=25.22 E-value=1.1e+02 Score=32.43 Aligned_cols=73 Identities=8% Similarity=-0.113 Sum_probs=46.8
Q ss_pred CeeecCCCeeEEEEEeCC-CcEEEEEEccCCChhcHHHHHHHHHHHHhcCCCcc-cceEEEEEeCCeEEEEecccccCcH
Q 004953 630 TQIGQGGYGKVYKGILPD-GTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNL-VSLVGYCDEEGEQVLPLKLYIYLFI 707 (722)
Q Consensus 630 ~~iG~G~fG~Vy~g~l~~-g~~vAVK~l~~~~~~~~~~f~~E~~~l~~l~H~Ni-v~l~g~~~~~~~~~Lv~ey~~~G~L 707 (722)
+.|+.|-...+|+...++ +..+.+|........ .-+-.+|..++..+...++ .++++++ .+ .+||||+++-.+
T Consensus 114 ~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~~~-~idR~~E~~vl~~L~~~gl~P~ll~~~--~~--G~v~e~I~G~~l 188 (458)
T 2qg7_A 114 QIINGGITNILIKVKDMSKQAKYLIRLYGPKTDE-IINREREKKISCILYNKNIAKKIYVFF--TN--GRIEEFMDGYAL 188 (458)
T ss_dssp EEECC--CEEEEEEEETTTTEEEEEEEECC-CCS-CSCHHHHHHHHHHHTTSSSBCCEEEEE--TT--EEEEECCCSEEC
T ss_pred EEcCCCeEeEEEEEEECCCCceEEEEECCCChhh-hcCHHHHHHHHHHHHhcCCCCCEEEEe--CC--eEEEEeeCCccC
Confidence 457778889999998865 467888876432111 0112578888888865555 4677766 23 259999997555
Done!