BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004955
(722 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W27|A Chain A, Phenylalanine Ammonia-Lyase (Pal) From Petroselinum
Crispum
pdb|1W27|B Chain B, Phenylalanine Ammonia-Lyase (Pal) From Petroselinum
Crispum
Length = 714
Score = 1252 bits (3240), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 597/693 (86%), Positives = 646/693 (93%), Gaps = 5/693 (0%)
Query: 29 DPLNWTVAADSLKGSHLDEVKRMIDEYRRPVVKLGGESLTIGQVTAIAAHD-SGVKVELA 87
DPL W +AA+++ GSHLDEVK+M+ EYR+PVVKLGGE+LTI QV AI+A D SGV VEL+
Sbjct: 26 DPLYWGIAAEAMTGSHLDEVKKMVAEYRKPVVKLGGETLTISQVAAISARDGSGVTVELS 85
Query: 88 EAARAGVKASSDWVMDSMMKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNSGIFGN 147
EAARAGVKASSDWVMDSM KGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLN+GIFGN
Sbjct: 86 EAARAGVKASSDWVMDSMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGN 145
Query: 148 GTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILETITKFLNHNITPCLPLRGTITAS 207
G S +TLPHSATRAAMLVR+NTLLQGYSGIRFEILE ITKFLN NITPCLPLRGTIT
Sbjct: 146 G--SDNTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKFLNQNITPCLPLRGTITX- 202
Query: 208 GDLVPLSYIAGLLTGRPNSKAVGPNGQVLNPTEAFNLAGVTSGFFELQPKEGLALVNGTA 267
DLVPLSYIAGLLTGRPNSKAVGP G +L+P EAF LAGV GFFELQPKEGLALVNGTA
Sbjct: 203 -DLVPLSYIAGLLTGRPNSKAVGPTGVILSPEEAFKLAGVEGGFFELQPKEGLALVNGTA 261
Query: 268 VGSGLAATVLFEANILAIMSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIMEH 327
VGSG+A+ VLFEANILA+++EV+SAIFAEVM GKPEFTDHLTHKLKHHPGQIEAAAIMEH
Sbjct: 262 VGSGMASMVLFEANILAVLAEVMSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEH 321
Query: 328 ILDGSSYVKAAQKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRAATKMIEREINSVND 387
ILDGS+YVKAAQKLHE+DPLQKPKQDRYALRTSPQWLGPQIEVIR++TKMIEREINSVND
Sbjct: 322 ILDGSAYVKAAQKLHEMDPLQKPKQDRYALRTSPQWLGPQIEVIRSSTKMIEREINSVND 381
Query: 388 NPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLLFAQFSELVNDFYNNGLPSNL 447
NPLIDVSRNKA+HGGNFQGTPIGVSMDNTRLAIA+IGKL+FAQFSELVNDFYNNGLPSNL
Sbjct: 382 NPLIDVSRNKAIHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNL 441
Query: 448 TGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAE 507
+GGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKT+E
Sbjct: 442 SGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTSE 501
Query: 508 AVDILKLMSSTFLVALCQAIDLRHLEENLKNTVKNTVSQVAKRVLTMGVNGELHPSRFCE 567
AV+ILKLMS+TFLV LCQAIDLRHLEENLK+TVKNTVS VAKRVLTMGVNGELHPSRFCE
Sbjct: 502 AVEILKLMSTTFLVGLCQAIDLRHLEENLKSTVKNTVSSVAKRVLTMGVNGELHPSRFCE 561
Query: 568 KDLIKVVDREYVFAYIDDPCSASYPLMQKLRQVLVDHALDNGDREKNSTTSIFQKIGAFE 627
KDL++VVDREY+FAYIDDPCSA+YPLMQKLRQ LV+HAL NGD E+N +TSIFQKI FE
Sbjct: 562 KDLLRVVDREYIFAYIDDPCSATYPLMQKLRQTLVEHALKNGDNERNLSTSIFQKIATFE 621
Query: 628 DELKTLLPKEVEIARTELESGNAAIANRIKECRSYPLYKIVREEIGTSLLTGEKVRSPGE 687
DELK LLPKEVE AR LESGN AI NRI+ECRSYPLYK VR+E+GT LTGEKV SPGE
Sbjct: 622 DELKALLPKEVESARAALESGNPAIPNRIEECRSYPLYKFVRKELGTEYLTGEKVTSPGE 681
Query: 688 EFDKVFAAMCEGKLIDPMLECLKEWNGAPLPIC 720
EF+KVF AM +G++IDP+LECL+ WNGAPLPIC
Sbjct: 682 EFEKVFIAMSKGEIIDPLLECLESWNGAPLPIC 714
>pdb|2YII|A Chain A, Manipulating The Regioselectivity Of Phenylalanine
Aminomutase: New Insights Into The Reaction Mechanism Of
Mio-dependent Enzymes From Structure-guided Directed
Evolution
pdb|2YII|B Chain B, Manipulating The Regioselectivity Of Phenylalanine
Aminomutase: New Insights Into The Reaction Mechanism Of
Mio-dependent Enzymes From Structure-guided Directed
Evolution
pdb|2YII|C Chain C, Manipulating The Regioselectivity Of Phenylalanine
Aminomutase: New Insights Into The Reaction Mechanism Of
Mio-dependent Enzymes From Structure-guided Directed
Evolution
pdb|2YII|D Chain D, Manipulating The Regioselectivity Of Phenylalanine
Aminomutase: New Insights Into The Reaction Mechanism Of
Mio-dependent Enzymes From Structure-guided Directed
Evolution
pdb|4BAB|A Chain A, Redesign Of A Phenylalanine Aminomutase Into A
Beta-phenylalanine Ammonia Lyase
pdb|4BAB|B Chain B, Redesign Of A Phenylalanine Aminomutase Into A
Beta-phenylalanine Ammonia Lyase
pdb|4BAB|C Chain C, Redesign Of A Phenylalanine Aminomutase Into A
Beta-phenylalanine Ammonia Lyase
pdb|4BAB|D Chain D, Redesign Of A Phenylalanine Aminomutase Into A
Beta-phenylalanine Ammonia Lyase
Length = 705
Score = 580 bits (1496), Expect = e-166, Method: Compositional matrix adjust.
Identities = 306/685 (44%), Positives = 442/685 (64%), Gaps = 26/685 (3%)
Query: 43 SHLDEVKRMIDEYR--RPVVKLGGESLTIGQVTAIAA-HDSGVKVELAEAARAGVKASSD 99
SH+ ++ +I+ + + + G +T+ V A+A HD V +E AE RA V+ S
Sbjct: 29 SHVKDILGLINAFNEVKKITVDGTTPITVAHVAALARRHDVKVALE-AEQCRARVETCSS 87
Query: 100 WVMDSMMKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNSGIFGNGTESS-HTLPHS 158
WV G D YGVTTGFGA S RRT + LQ+ LIR L +G+F G S LP +
Sbjct: 88 WVQRKAEDGADIYGVTTGFGACSSRRTNRLSELQESLIRCLLAGVFTKGCAPSVDELPAT 147
Query: 159 ATRAAMLVRVNTLLQGYSGIRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAG 218
ATR+AML+R+N+ G SGIR+E++E + K LN N++P +PLRG++ S DL+PL+YIAG
Sbjct: 148 ATRSAMLLRLNSFTYGCSGIRWEVMEALEKLLNSNVSPKVPLRGSV--SXDLIPLAYIAG 205
Query: 219 LLTGRPNSKA-VGPNGQVLNPTEAFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVL 277
LL G+P+ A +G + +V P EA + G+ F+LQ KEGLALVNGT+ + +A+TV+
Sbjct: 206 LLIGKPSVIARIGDDVEVPAP-EALSRVGLRP--FKLQAKEGLALVNGTSFATAVASTVM 262
Query: 278 FEANILAIMSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKA 337
++AN+L ++ E L +F EV+ G+ EF L HK+K HPGQIE+A ++E +L S + +
Sbjct: 263 YDANVLLLLVETLCGMFCEVIFGREEFAHPLIHKVKPHPGQIESAELLEWLLRSSPFQEL 322
Query: 338 AQKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRAATKMIEREINSVNDNPLIDVSRNK 397
+++ + ID L+KPKQDRYALR+SPQWL P ++ IR AT +E E+NS NDNP+ID + ++
Sbjct: 323 SREYYSIDKLKKPKQDRYALRSSPQWLAPLVQTIRDATTTVETEVNSANDNPIIDHANDR 382
Query: 398 ALHGGNFQGTPIGVSMDNTRLAIASIGKLLFAQFSELVNDFYNNGLPSNLTGGRNPSLDY 457
ALHG NFQG+ +G MD R+A+A +GKLLFAQF+EL+ ++Y+NGLP NL+ G + S+DY
Sbjct: 383 ALHGANFQGSAVGFYMDYVRIAVAGLGKLLFAQFTELMIEYYSNGLPGNLSLGPDLSVDY 442
Query: 458 GFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSS 517
G KG +IAMA+Y SELQ+LANPVT HV SAEQHNQD+NSL LIS+RKT EA+DILKLM +
Sbjct: 443 GLKGLDIAMAAYSSELQYLANPVTTHVHSAEQHNQDINSLALISARKTEEALDILKLMIA 502
Query: 518 TFLVALCQAIDLRHLEENLKNTVKNTVSQVAKRVLTMGVNGELHPSRFCEKDLIKVVDRE 577
+ L A+CQA+DLR LEE L V+N VS +A G+ + + L+ V
Sbjct: 503 SHLTAMCQAVDLRQLEEALVKVVENVVSTLADEC---GLPND------TKARLLYVAKAV 553
Query: 578 YVFAYIDDPCSASYPLMQKLRQVLVDHALDNGDREKNSTTSIFQKIGAFEDELKTLLPKE 637
V+ Y++ PC + PL+ L+Q D L ++ T ++ ++ FE L L E
Sbjct: 554 PVYTYLESPCDPTLPLLLGLKQSCFDTILALHKKDGIETDTLVDRLAEFEKRLSDRLENE 613
Query: 638 VEIARTELESGNAAIAN------RIKECRSYPLYKIVREEIGTSLLTGEKVRSPGEEFDK 691
+ R E A+ RI+ + P Y+ VREE+ T +++ + ++P E+ K
Sbjct: 614 MTAVRVLYEKKGHKTADNNDALVRIQGSKFLPFYRFVREELDTGVMSARREQTPQEDVQK 673
Query: 692 VFAAMCEGKLIDPMLECLKEWNGAP 716
VF A+ +G++ P+L CL+ + G P
Sbjct: 674 VFDAIADGRITVPLLHCLQGFLGQP 698
>pdb|3NZ4|A Chain A, Crystal Structure Of A Taxus Phenylalanine Aminomutase
pdb|3NZ4|B Chain B, Crystal Structure Of A Taxus Phenylalanine Aminomutase
Length = 696
Score = 580 bits (1494), Expect = e-165, Method: Compositional matrix adjust.
Identities = 307/685 (44%), Positives = 440/685 (64%), Gaps = 26/685 (3%)
Query: 43 SHLDEVKRMIDEYR--RPVVKLGGESLTIGQVTAIAA-HDSGVKVELAEAARAGVKASSD 99
SH+ ++ +I+ + + + G +T+ V A+A HD V +E AE RA V+ S
Sbjct: 9 SHVKDILGLINTFNEVKKITVDGTTPITVAHVAALARRHDVKVALE-AEQCRARVETCSS 67
Query: 100 WVMDSMMKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNSGIFGNGTESS-HTLPHS 158
WV G D YGVTTGFGA S RRT Q LQ+ LIR L +G+F G SS LP +
Sbjct: 68 WVQRKAEDGADIYGVTTGFGACSSRRTNQLSELQESLIRCLLAGVFTKGCASSVDELPAT 127
Query: 159 ATRAAMLVRVNTLLQGYSGIRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAG 218
TR+AML+R+N+ G SGIR+E++E + K LN N++P +PLRG++ S DL+PL+YIAG
Sbjct: 128 VTRSAMLLRLNSFTYGCSGIRWEVMEALEKLLNSNVSPKVPLRGSV--SXDLIPLAYIAG 185
Query: 219 LLTGRPNSKA-VGPNGQVLNPTEAFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVL 277
LL G+P+ A +G + +V P EA + G+ F+LQ KEGLALVNGT+ + LA+TV+
Sbjct: 186 LLIGKPSVIARIGDDVEVPAP-EALSRVGLRP--FKLQAKEGLALVNGTSFATALASTVM 242
Query: 278 FEANILAIMSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKA 337
++AN+L ++ E L +F EV+ G+ EF L HK+K HPGQIE+A ++E +L S +
Sbjct: 243 YDANVLLLLVETLCGMFCEVIFGREEFAHPLIHKVKPHPGQIESAELLEWLLRSSPFQDL 302
Query: 338 AQKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRAATKMIEREINSVNDNPLIDVSRNK 397
+++ + ID L+KPKQDRYALR+SPQWL P ++ IR AT +E E+NS NDNP+ID + ++
Sbjct: 303 SREYYSIDKLKKPKQDRYALRSSPQWLAPLVQTIRDATTTVETEVNSANDNPIIDHANDR 362
Query: 398 ALHGGNFQGTPIGVSMDNTRLAIASIGKLLFAQFSELVNDFYNNGLPSNLTGGRNPSLDY 457
ALHG NFQG+ +G MD R+A+A +GKLLFAQF+EL+ ++Y+NGLP NL+ G + S+DY
Sbjct: 363 ALHGANFQGSAVGFYMDYVRIAVAGLGKLLFAQFTELMIEYYSNGLPGNLSLGPDLSVDY 422
Query: 458 GFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSS 517
G KG +IAMA+Y SELQ+LANPVT HV SAEQHNQD+NSL LIS+RKT EA+DILKLM +
Sbjct: 423 GLKGLDIAMAAYSSELQYLANPVTTHVHSAEQHNQDINSLALISARKTDEALDILKLMIA 482
Query: 518 TFLVALCQAIDLRHLEENLKNTVKNTVSQVAKRVLTMGVNGELHPSRFCEKDLIKVVDRE 577
+ L A+CQA+DLR LEE L V+N VS +A G+ + + L+ V
Sbjct: 483 SHLTAMCQAVDLRQLEEALVKVVENVVSTLADEC---GLPND------TKARLLYVAKAV 533
Query: 578 YVFAYIDDPCSASYPLMQKLRQVLVDHALDNGDREKNSTTSIFQKIGAFEDELKTLLPKE 637
V+ Y++ PC + PL+ L+Q L ++ T ++ ++ FE L L E
Sbjct: 534 PVYTYLESPCDPTLPLLLGLKQSCFGSILALHKKDGIETDTLVDRLAEFEKRLSDRLENE 593
Query: 638 VEIARTELESGNAAIAN------RIKECRSYPLYKIVREEIGTSLLTGEKVRSPGEEFDK 691
+ R E A+ RI+ R P Y+ VR+E+ T +++ + ++P E+ K
Sbjct: 594 MTAVRVLYEKKGHKTADNNDALVRIQGSRFLPFYRFVRDELDTGVMSARREQTPQEDVQK 653
Query: 692 VFAAMCEGKLIDPMLECLKEWNGAP 716
VF A+ +G++ P+L CL+ + G P
Sbjct: 654 VFDAIADGRITVPLLHCLQGFLGQP 678
>pdb|4BAA|A Chain A, Redesign Of A Phenylalanine Aminomutase Into A Beta-
Phenylalanine Ammonia Lyase
pdb|4BAA|B Chain B, Redesign Of A Phenylalanine Aminomutase Into A Beta-
Phenylalanine Ammonia Lyase
pdb|4BAA|C Chain C, Redesign Of A Phenylalanine Aminomutase Into A Beta-
Phenylalanine Ammonia Lyase
pdb|4BAA|D Chain D, Redesign Of A Phenylalanine Aminomutase Into A Beta-
Phenylalanine Ammonia Lyase
Length = 705
Score = 577 bits (1488), Expect = e-165, Method: Compositional matrix adjust.
Identities = 305/685 (44%), Positives = 441/685 (64%), Gaps = 26/685 (3%)
Query: 43 SHLDEVKRMIDEYR--RPVVKLGGESLTIGQVTAIAA-HDSGVKVELAEAARAGVKASSD 99
SH+ ++ +I+ + + + G +T+ V A+A HD V +E AE RA V+ S
Sbjct: 29 SHVKDILGLINAFNEVKKITVDGTTPITVAHVAALARRHDVKVALE-AEQCRARVETCSS 87
Query: 100 WVMDSMMKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNSGIFGNGTESS-HTLPHS 158
WV G D YGVTTGFGA S RT + LQ+ LIR L +G+F G S LP +
Sbjct: 88 WVQRKAEDGADIYGVTTGFGACSSSRTNRLSELQESLIRCLLAGVFTKGCAPSVDELPAT 147
Query: 159 ATRAAMLVRVNTLLQGYSGIRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAG 218
ATR+AML+R+N+ G SGIR+E++E + K LN N++P +PLRG++ S DL+PL+YIAG
Sbjct: 148 ATRSAMLLRLNSFTYGCSGIRWEVMEALEKLLNSNVSPKVPLRGSV--SXDLIPLAYIAG 205
Query: 219 LLTGRPNSKA-VGPNGQVLNPTEAFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVL 277
LL G+P+ A +G + +V P EA + G+ F+LQ KEGLALVNGT+ + +A+TV+
Sbjct: 206 LLIGKPSVIARIGDDVEVPAP-EALSRVGLRP--FKLQAKEGLALVNGTSFATAVASTVM 262
Query: 278 FEANILAIMSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKA 337
++AN+L ++ E L +F EV+ G+ EF L HK+K HPGQIE+A ++E +L S + +
Sbjct: 263 YDANVLLLLVETLCGMFCEVIFGREEFAHPLIHKVKPHPGQIESAELLEWLLRSSPFQEL 322
Query: 338 AQKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRAATKMIEREINSVNDNPLIDVSRNK 397
+++ + ID L+KPKQDRYALR+SPQWL P ++ IR AT +E E+NS NDNP+ID + ++
Sbjct: 323 SREYYSIDKLKKPKQDRYALRSSPQWLAPLVQTIRDATTTVETEVNSANDNPIIDHANDR 382
Query: 398 ALHGGNFQGTPIGVSMDNTRLAIASIGKLLFAQFSELVNDFYNNGLPSNLTGGRNPSLDY 457
ALHG NFQG+ +G MD R+A+A +GKLLFAQF+EL+ ++Y+NGLP NL+ G + S+DY
Sbjct: 383 ALHGANFQGSAVGFYMDYVRIAVAGLGKLLFAQFTELMIEYYSNGLPGNLSLGPDLSVDY 442
Query: 458 GFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSS 517
G KG +IAMA+Y SELQ+LANPVT HV SAEQHNQD+NSL LIS+RKT EA+DILKLM +
Sbjct: 443 GLKGLDIAMAAYSSELQYLANPVTTHVHSAEQHNQDINSLALISARKTEEALDILKLMIA 502
Query: 518 TFLVALCQAIDLRHLEENLKNTVKNTVSQVAKRVLTMGVNGELHPSRFCEKDLIKVVDRE 577
+ L A+CQA+DLR LEE L V+N VS +A G+ + + L+ V
Sbjct: 503 SHLTAMCQAVDLRQLEEALVKVVENVVSTLADEC---GLPND------TKARLLYVAKAV 553
Query: 578 YVFAYIDDPCSASYPLMQKLRQVLVDHALDNGDREKNSTTSIFQKIGAFEDELKTLLPKE 637
V+ Y++ PC + PL+ L+Q D L ++ T ++ ++ FE L L E
Sbjct: 554 PVYTYLESPCDPTLPLLLGLKQSCFDTILALHKKDGIETDTLVDRLAEFEKRLSDRLENE 613
Query: 638 VEIARTELESGNAAIAN------RIKECRSYPLYKIVREEIGTSLLTGEKVRSPGEEFDK 691
+ R E A+ RI+ + P Y+ VREE+ T +++ + ++P E+ K
Sbjct: 614 MTAVRVLYEKKGHKTADNNDALVRIQGSKFLPFYRFVREELDTGVMSARREQTPQEDVQK 673
Query: 692 VFAAMCEGKLIDPMLECLKEWNGAP 716
VF A+ +G++ P+L CL+ + G P
Sbjct: 674 VFDAIADGRITVPLLHCLQGFLGQP 698
>pdb|1Y2M|A Chain A, Crystal Structure Of Phenylalanine Ammonia-Lyase From
Yeast Rhododporidium Toruloides
pdb|1Y2M|B Chain B, Crystal Structure Of Phenylalanine Ammonia-Lyase From
Yeast Rhododporidium Toruloides
pdb|1Y2M|C Chain C, Crystal Structure Of Phenylalanine Ammonia-Lyase From
Yeast Rhododporidium Toruloides
pdb|1Y2M|D Chain D, Crystal Structure Of Phenylalanine Ammonia-Lyase From
Yeast Rhododporidium Toruloides
Length = 716
Score = 333 bits (855), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 219/525 (41%), Positives = 298/525 (56%), Gaps = 36/525 (6%)
Query: 39 SLKGSHL--------DEVKRMIDEYRRPVVKLGGESLTIGQVTAIAAHDSGVKVELAEAA 90
++ GSHL D V++ + ++L G SL +G V + A V+V+ ++
Sbjct: 31 AVAGSHLPTTQVTQVDIVEKXLAAPTDSTLELDGYSLNLGDVVSAARKGRPVRVKDSDEI 90
Query: 91 RAGVKASSDWVMDSMMKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNSGIF----- 145
R+ + S +++ + YGVTTGFG ++ RT+ +LQK L+ G+
Sbjct: 91 RSKIDKSVEFLRSQLSXSV--YGVTTGFGGSADTRTEDAISLQKALLEHQLCGVLPSSFD 148
Query: 146 ----GNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILETITKFLNHNITPCLPLR 201
G G E+S LP R A +RVN+L +G+S +R +LE +T FLNH ITP +PLR
Sbjct: 149 SFRLGRGLENS--LPLEVVRGAXTIRVNSLTRGHSAVRLVVLEALTNFLNHGITPIVPLR 206
Query: 202 GTITASGDLVPLSYIAGLLTGRPNSKA-VGPNG--QVLNPTEA---FNLAGVTSGFFELQ 255
GTI+ASGDL PLSYIA ++G P+SK V G ++L EA FNL V G
Sbjct: 207 GTISASGDLSPLSYIAAAISGHPDSKVHVVHEGKEKILYAREAXALFNLEPVVLG----- 261
Query: 256 PKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEVMNGKP-EFTDHLTHKLKH 314
PKEGL LVNGTAV + A L +A+ L+++S+ L+A E G F L +
Sbjct: 262 PKEGLGLVNGTAVSASXATLALHDAHXLSLLSQSLTAXTVEAXVGHAGSFHPFLHDVTRP 321
Query: 315 HPGQIEAAAIMEHILDGSSY-VKAAQKLHEIDPLQKPKQDRYALRTSPQWLGPQI-EVIR 372
HP QIE A + +L+GS + V +++ D +QDRY LRTSPQWLGP + ++I
Sbjct: 322 HPTQIEVAGNIRKLLEGSRFAVHHEEEVKVKDDEGILRQDRYPLRTSPQWLGPLVSDLIH 381
Query: 373 AATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLLFAQFS 432
A + S DNPLIDV + HGGNFQ + + + TRL +A IGKL F Q +
Sbjct: 382 AHAVLTIEAGQSTTDNPLIDVENKTSHHGGNFQAAAVANTXEKTRLGLAQIGKLNFTQLT 441
Query: 433 ELVNDFYNNGLPSNLTGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQ 492
E +N N GLPS L +PSL Y KG +IA A+Y SEL LANPVT HVQ AE NQ
Sbjct: 442 EXLNAGXNRGLPSCL-AAEDPSLSYHCKGLDIAAAAYTSELGHLANPVTTHVQPAEXANQ 500
Query: 493 DVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLK 537
VNSL LIS+R+T E+ D+L L+ +T L + QAIDLR +E K
Sbjct: 501 AVNSLALISARRTTESNDVLSLLLATHLYCVLQAIDLRAIEFEFK 545
>pdb|1T6J|A Chain A, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
pdb|1T6J|B Chain B, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
pdb|1T6P|A Chain A, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
pdb|1T6P|B Chain B, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
pdb|1T6P|C Chain C, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
pdb|1T6P|D Chain D, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
pdb|1T6P|E Chain E, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
pdb|1T6P|F Chain F, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
pdb|1T6P|G Chain G, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
pdb|1T6P|H Chain H, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
Length = 714
Score = 323 bits (829), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 217/525 (41%), Positives = 295/525 (56%), Gaps = 38/525 (7%)
Query: 39 SLKGSHL--------DEVKRMIDEYRRPVVKLGGESLTIGQVTAIAAHDSGVKVELAEAA 90
++ GSHL D V++ + ++L G SL +G V + A V+V+ ++
Sbjct: 31 AVAGSHLPTTQVTQVDIVEKXLAAPTDSTLELDGYSLNLGDVVSAARKGRPVRVKDSDEI 90
Query: 91 RAGVKASSDWVMDSMMKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNSGIF----- 145
R+ + S +++ + YGVTTGFG ++ RT+ +LQK L+ G+
Sbjct: 91 RSKIDKSVEFLRSQLSXSV--YGVTTGFGGSADTRTEDAISLQKALLEHQLCGVLPSSFD 148
Query: 146 ----GNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILETITKFLNHNITPCLPLR 201
G G E+S LP R A +RVN+L +G+S +R +LE +T FLNH ITP +PLR
Sbjct: 149 SFRLGRGLENS--LPLEVVRGAXTIRVNSLTRGHSAVRLVVLEALTNFLNHGITPIVPLR 206
Query: 202 GTITASGDLVPLSYIAGLLTGRPNSKA-VGPNGQ--VLNPTEA---FNLAGVTSGFFELQ 255
GTI S DL PLSYIA ++G P+SK V G+ +L EA FNL V G
Sbjct: 207 GTI--SXDLSPLSYIAAAISGHPDSKVHVVHEGKEKILYAREAXALFNLEPVVLG----- 259
Query: 256 PKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEVMNGKP-EFTDHLTHKLKH 314
PKEGL LVNGTAV + A L +A+ L+++S+ L+A E G F L +
Sbjct: 260 PKEGLGLVNGTAVSASXATLALHDAHXLSLLSQSLTAXTVEAXVGHAGSFHPFLHDVTRP 319
Query: 315 HPGQIEAAAIMEHILDGSSY-VKAAQKLHEIDPLQKPKQDRYALRTSPQWLGPQI-EVIR 372
HP QIE A + +L+GS + V +++ D +QDRY LRTSPQWLGP + ++I
Sbjct: 320 HPTQIEVAGNIRKLLEGSRFAVHHEEEVKVKDDEGILRQDRYPLRTSPQWLGPLVSDLIH 379
Query: 373 AATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLLFAQFS 432
A + S DNPLIDV + HGGNFQ + + + TRL +A IGKL F Q +
Sbjct: 380 AHAVLTIEAGQSTTDNPLIDVENKTSHHGGNFQAAAVANTXEKTRLGLAQIGKLNFTQLT 439
Query: 433 ELVNDFYNNGLPSNLTGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQ 492
E +N N GLPS L +PSL Y KG +IA A+Y SEL LANPVT HVQ AE NQ
Sbjct: 440 EXLNAGXNRGLPSCL-AAEDPSLSYHCKGLDIAAAAYTSELGHLANPVTTHVQPAEXANQ 498
Query: 493 DVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLK 537
VNSL LIS+R+T E+ D+L L+ +T L + QAIDLR +E K
Sbjct: 499 AVNSLALISARRTTESNDVLSLLLATHLYCVLQAIDLRAIEFEFK 543
>pdb|2NYF|A Chain A, Crystal Structure Of Phenylalanine Ammonia-Lyase From
Nostoc Punctiforme
Length = 567
Score = 276 bits (705), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 179/482 (37%), Positives = 269/482 (55%), Gaps = 28/482 (5%)
Query: 59 VVKLGGESLTIGQVTAIAAHDSGVKVELAEAARA--GVKASSDWVMDSMMKGTDSYGVTT 116
+V +G +LTI +V +A H G +V L + A GV+AS D++ +++ YGVT+
Sbjct: 25 IVTVGDRNLTIDEVVNVARH--GTQVRLTDNADVIRGVQASCDYINNAVETAQPIYGVTS 82
Query: 117 GFGATSHR--RTKQGGALQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQG 174
GFG + +Q LQ LI FL SG + + L + RAAML+R N+ L G
Sbjct: 83 GFGGMADVVISREQAAELQTNLIWFLKSG-------AGNKLSLADVRAAMLLRANSHLYG 135
Query: 175 YSGIRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGQ 234
SGIR E+++ I FLN +TP + G+I DLVPLSYI G L G S V +G+
Sbjct: 136 ASGIRLELIQRIETFLNAGVTPHVYEFGSI--GXDLVPLSYITGALIGLDPSFTVDFDGK 193
Query: 235 VLNPTEAFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIF 294
++ A + G+ +LQPKEGLA++NGT+V +G+AA +++A +L ++ + A+
Sbjct: 194 EMDAVTALSRLGLPK--LQLQPKEGLAMMNGTSVMTGIAANCVYDAKVLLALTMGVHALA 251
Query: 295 AEVMNGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAQKLHEIDPLQKPK--- 351
+ + G + H+ K HPGQ+ A M +L SS V+ E+D + +
Sbjct: 252 IQGLYGTNQSFHPFIHQCKPHPGQLWTADQMFSLLKDSSLVR-----EELDGKHEYRGKD 306
Query: 352 --QDRYALRTSPQWLGPQIEVIRAATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPI 409
QDRY+LR Q++GP ++ + TK IE E+NSV DNPLIDV + HGGNF G +
Sbjct: 307 LIQDRYSLRCLAQFIGPIVDGVSEITKQIEVEMNSVTDNPLIDVENQVSYHGGNFLGQYV 366
Query: 410 GVSMDNTRLAIASIGKLLFAQFSELVNDFYNNGLPSNLTGGRNPSLDYGFKGAEIAMASY 469
GV+MD R I + K + Q + LV+ ++NGLP +L G + ++ G KG +I+ S
Sbjct: 367 GVTMDRLRYYIGLLAKHIDVQIALLVSPEFSNGLPPSLVGNSDRKVNMGLKGLQISGNSI 426
Query: 470 CSELQFLANPVTNHVQS-AEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAID 528
L F N + + + AEQ NQ++NS G IS+ T +VDI + + L+ QA+D
Sbjct: 427 MPLLSFYGNSLADRFPTHAEQFNQNINSQGYISANLTRRSVDIFQNYMAIALMFGVQAVD 486
Query: 529 LR 530
LR
Sbjct: 487 LR 488
>pdb|2NYN|A Chain A, Crystal Structure Of Phenylalanine Ammonia-Lyase From
Anabaena Variabilis
pdb|2NYN|B Chain B, Crystal Structure Of Phenylalanine Ammonia-Lyase From
Anabaena Variabilis
pdb|2NYN|C Chain C, Crystal Structure Of Phenylalanine Ammonia-Lyase From
Anabaena Variabilis
pdb|2NYN|D Chain D, Crystal Structure Of Phenylalanine Ammonia-Lyase From
Anabaena Variabilis
Length = 565
Score = 267 bits (682), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 179/506 (35%), Positives = 271/506 (53%), Gaps = 32/506 (6%)
Query: 60 VKLGGESLTIGQVTAIAAHDSGVKVELAEAARAGVKASSDWVMDSMMKGTDSYGVTTGFG 119
V +G + LTI V +A + + V + G++AS D++ +++ G YGVT+GFG
Sbjct: 26 VIIGNQKLTINDVARVARNGTLVSLTNNTDILQGIQASCDYINNAVESGEPIYGVTSGFG 85
Query: 120 ATSHRRT--KQGGALQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSG 177
++ +Q LQ L+ FL +G + + LP + RAAML+R N+ ++G SG
Sbjct: 86 GMANVAISREQASELQTNLVWFLKTG-------AGNKLPLADVRAAMLLRANSHMRGASG 138
Query: 178 IRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGQVLN 237
IR E+++ + FLN +TP + G+I DLVPLSYI G L G S V NG+ ++
Sbjct: 139 IRLELIKRMEIFLNAGVTPYVYEFGSI--GXDLVPLSYITGSLIGLDPSFKVDFNGKEMD 196
Query: 238 PTEAF---NLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIF 294
A NL+ +T L PKEGLA++NGT+V +G+AA +++ IL ++ + A+
Sbjct: 197 APTALRQLNLSPLT-----LLPKEGLAMMNGTSVMTGIAANCVYDTQILTAIAMGVHALD 251
Query: 295 AEVMNGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYV------KAAQKLHEIDPLQ 348
+ +NG + H K HPGQ+ AA M +L S V K + HE+
Sbjct: 252 IQALNGTNQSFHPFIHNSKPHPGQLWAADQMISLLANSQLVRDELDGKHDYRDHEL---- 307
Query: 349 KPKQDRYALRTSPQWLGPQIEVIRAATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTP 408
QDRY+LR PQ+LGP ++ I K IE EINSV DNPLIDV + HGGNF G
Sbjct: 308 --IQDRYSLRCLPQYLGPIVDGISQIAKQIEIEINSVTDNPLIDVDNQASYHGGNFLGQY 365
Query: 409 IGVSMDNTRLAIASIGKLLFAQFSELVNDFYNNGLPSNLTGGRNPSLDYGFKGAEIAMAS 468
+G+ MD+ R I + K L Q + L + ++NGLP +L G R ++ G KG +I S
Sbjct: 366 VGMGMDHLRYYIGLLAKHLDVQIALLASPEFSNGLPPSLLGNRERKVNMGLKGLQICGNS 425
Query: 469 YCSELQFLANPVTNHVQS-AEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAI 527
L F N + + + AEQ NQ++NS G S+ +VDI + + L+ QA+
Sbjct: 426 IMPLLTFYGNSIADRFPTHAEQFNQNINSQGYTSATLARRSVDIFQNYVAIALMFGVQAV 485
Query: 528 DLRHLEENLKNTVKNTVSQVAKRVLT 553
DLR ++ + +S +R+ +
Sbjct: 486 DLRTYKKTGHYDARACLSPATERLYS 511
>pdb|3CZO|A Chain A, Crystal Structure Of Double Mutant Phenylalanine
Ammonia-Lyase From Anabaena Variabilis
pdb|3CZO|B Chain B, Crystal Structure Of Double Mutant Phenylalanine
Ammonia-Lyase From Anabaena Variabilis
pdb|3CZO|C Chain C, Crystal Structure Of Double Mutant Phenylalanine
Ammonia-Lyase From Anabaena Variabilis
pdb|3CZO|D Chain D, Crystal Structure Of Double Mutant Phenylalanine
Ammonia-Lyase From Anabaena Variabilis
Length = 539
Score = 253 bits (647), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 176/506 (34%), Positives = 262/506 (51%), Gaps = 32/506 (6%)
Query: 60 VKLGGESLTIGQVTAIAAHDSGVKVELAEAARAGVKASSDWVMDSMMKGTDSYGVTTGFG 119
V +G + LTI V +A + + V + G++AS D++ +++ G YGVT+GFG
Sbjct: 2 VIIGNQKLTINDVARVARNGTLVSLTNNTDILQGIQASCDYINNAVESGEPIYGVTSGFG 61
Query: 120 ATSHR--RTKQGGALQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSG 177
++ +Q LQ L+ FL +G + + LP + RAA L+R N+ +G SG
Sbjct: 62 GXANVAISREQASELQTNLVWFLKTG-------AGNKLPLADVRAAXLLRANSHXRGASG 114
Query: 178 IRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGQVLN 237
IR E+++ FLN +TP + G+I DLVPLSYI G L G S V NG+ +
Sbjct: 115 IRLELIKRXEIFLNAGVTPYVYEFGSI--GXDLVPLSYITGSLIGLDPSFKVDFNGKEXD 172
Query: 238 PTEAF---NLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIF 294
A NL+ +T L PKEGLA NGT+V +G+AA +++ IL ++ + A+
Sbjct: 173 APTALRQLNLSPLT-----LLPKEGLAXXNGTSVXTGIAANCVYDTQILTAIAXGVHALD 227
Query: 295 AEVMNGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYV------KAAQKLHEIDPLQ 348
+ +NG + H K HPGQ+ AA +L S V K + HE+
Sbjct: 228 IQALNGTNQSFHPFIHNSKPHPGQLWAADQXISLLANSQLVRDELDGKHDYRDHEL---- 283
Query: 349 KPKQDRYALRTSPQWLGPQIEVIRAATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTP 408
QDRY+LR PQ+LGP ++ I K IE EINSV DNPLIDV + HGGNF G
Sbjct: 284 --IQDRYSLRCLPQYLGPIVDGISQIAKQIEIEINSVTDNPLIDVDNQASYHGGNFLGQY 341
Query: 409 IGVSMDNTRLAIASIGKLLFAQFSELVNDFYNNGLPSNLTGGRNPSLDYGFKGAEIAMAS 468
+G D+ R I + K L Q + L + ++NGLP +L G R ++ G KG +I S
Sbjct: 342 VGXGXDHLRYYIGLLAKHLDVQIALLASPEFSNGLPPSLLGNRERKVNXGLKGLQICGNS 401
Query: 469 YCSELQFLANPVTNHVQS-AEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAI 527
L F N + + + AEQ NQ++NS G S+ +VDI + + L QA+
Sbjct: 402 IXPLLTFYGNSIADRFPTHAEQFNQNINSQGYTSATLARRSVDIFQNYVAIALXFGVQAV 461
Query: 528 DLRHLEENLKNTVKNTVSQVAKRVLT 553
DLR ++ + ++S +R+ +
Sbjct: 462 DLRTYKKTGHYDARASLSPATERLYS 487
>pdb|3KDY|A Chain A, X-Ray Crystal Structure Of Tyrosine Aminomutase Mutant
Construct
pdb|3KDY|B Chain B, X-Ray Crystal Structure Of Tyrosine Aminomutase Mutant
Construct
Length = 537
Score = 188 bits (478), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 163/533 (30%), Positives = 252/533 (47%), Gaps = 45/533 (8%)
Query: 60 VKLGGESLTIGQVTAIAAHDSGVKVELAEAARAGVKASSDWVMDSMMKGTDSYGVTTGFG 119
V + GE+LT+ V +A + V V A+A + S + + YGVTTG+G
Sbjct: 13 VSVDGETLTVEAVRRVAEERATVDVPAESIAKA--QKSREIFEGIAEQNIPIYGVTTGYG 70
Query: 120 ATSHRRTKQGGA--LQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSG 177
A + + + LQ L+R ++G+ RA + R+NTL +G+S
Sbjct: 71 AMIYMQVDKSKEVELQTNLVRSHSAGV-------GPLFAEDEARAIVAARLNTLAKGHSA 123
Query: 178 IRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGQVLN 237
+R ILE + ++LN ITP +P G++ DL PLS++A L G V +G+ +
Sbjct: 124 VRPIILERLAQYLNEGITPAIPEIGSL--GXDLAPLSHVASTLIG---EGYVLRDGRPVE 178
Query: 238 PTEAFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEV 297
+ G+ EL+ KEGLAL+NGT+ +GL + V+ A A +E+++A+ E
Sbjct: 179 TAQVLAERGIEP--LELRFKEGLALINGTSGMTGLGSLVVGRALEQAQQAEIVTALLIEA 236
Query: 298 MNGKPEFTDHLTHKL-KHHPGQIEAAAIMEHILDGSSYVKAAQKLHEIDPLQKPK----- 351
+ G H + + H GQI+ AA M ++ GS L LQK K
Sbjct: 237 VRGSTSPFLAEGHDIARPHEGQIDTAANMRALMRGSGLTVEHADLRR--ELQKDKEAGKD 294
Query: 352 --------QDRYALRTSPQWLGPQIEVIRAATKMIEREINSVNDNPLIDVSRNKALHGGN 403
Q Y+LR PQ +G + + A + E+NS NDNPL + HG N
Sbjct: 295 VQRSEIYLQKAYSLRAIPQVVGAVRDTLYHARHKLRIELNSANDNPLF-FEGKEIFHGAN 353
Query: 404 FQGTPIGVSMDNTRLAIASIGKLLFAQFSELVNDFYNNGLPSNLTGGRNPSLDYGFKGAE 463
F G PI +MD +A+ +G L Q + ++N + GLP L G +P L GF GA+
Sbjct: 354 FHGQPIAFAMDFVTIALTQLGVLAERQINRVLNRHLSYGLPEFLVSG-DPGLHSGFAGAQ 412
Query: 464 IAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAV-DILKLMSSTFLVA 522
+ +E + + T V S NQDV S+GLIS+R + + K+++ +L A
Sbjct: 413 YPATALVAENRTIGPASTQSVPS-NGDNQDVVSMGLISARNARRVLSNNNKILAVEYLAA 471
Query: 523 LCQAIDLRHLEENLKNTVKNTVSQVAKRVLTMGVNGELHPSRFCEKDLIKVVD 575
QA+D+ + L K T V + V T+GV+ R+ D+ V D
Sbjct: 472 -AQAVDISGRFDGLSPAAKATYEAVRRLVPTLGVD------RYMADDIELVAD 517
>pdb|1GK3|A Chain A, Histidine Ammonia-Lyase (Hal) Mutant D145a From
Pseudomonas Putida
Length = 509
Score = 187 bits (476), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 149/512 (29%), Positives = 253/512 (49%), Gaps = 32/512 (6%)
Query: 66 SLTIGQVTAIAAHDSGVKVELAEAARAGVKASSDWVMDSMMKGTDSYGVTTGFGATSHRR 125
+LT+ Q+ AI H + V+++L +A + AS V + + +YG+ TGFG + R
Sbjct: 9 TLTLAQLRAI--HAAPVRLQLDASAAPAIDASVACVEQIIAEDRTAYGINTGFGLLASTR 66
Query: 126 TKQGGA--LQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEIL 183
LQ+ L+ +GI L R M++++N+L +G+SGIR +++
Sbjct: 67 IASHDLENLQRSLVLSHAAGI-------GAPLDDDLVRLIMVLKINSLSRGFSGIRRKVI 119
Query: 184 ETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGQVLNPTEAFN 243
+ + +N + P +PL+G++ ASG L PL++++ +L G ++ GQ L+ TEA
Sbjct: 120 DALIALVNAEVYPHIPLKGSVGASGALAPLAHMSLVLLGEGKARY---KGQWLSATEALA 176
Query: 244 LAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEVMNGKPE 303
+AG+ L KEGLAL+NGT + A LF A L + + E + G
Sbjct: 177 VAGLEP--LTLAAKEGLALLNGTQASTAYALRGLFYAEDLYAAAIACGGLSVEAVLGSRS 234
Query: 304 FTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAQKLHEIDPLQKPKQDRYALRTSPQW 363
D H+ + GQI+ AA +L SS V + K D +Q P Y+LR PQ
Sbjct: 235 PFDARIHEARGQRGQIDTAACFRDLLGDSSEVSLSHK--NADKVQDP----YSLRCQPQV 288
Query: 364 LGPQIEVIRAATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASI 423
+G + +R A +++ E N+V+DNPL+ + + GGNF P+ ++ DN LAIA I
Sbjct: 289 MGACLTQLRQAAEVLGIEANAVSDNPLVFAAEGDVISGGNFHAEPVAMAADNLALAIAEI 348
Query: 424 GKLLFAQFSELVNDFYNNGLPSNLTGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNH 483
G L + S L+ D + + LP L N ++ GF A++ A+ SE + L++P +
Sbjct: 349 GSLSERRIS-LMMDKHMSQLPPFLV--ENGGVNSGFMIAQVTAAALASENKALSHPHSVD 405
Query: 484 VQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKNTVKNT 543
+ +D S+ + ++ E + + + + + CQ +DLR + LK + K
Sbjct: 406 SLPTSANQEDHVSMAPAAGKRLWEMAENTRGVLAIEWLGACQGLDLR---KGLKTSAKLE 462
Query: 544 VSQVAKRVLTMGVNGELHPSRFCEKDLIKVVD 575
++ A R + + RF D+ K V+
Sbjct: 463 KARQALRSEVAHYDRD----RFFAPDIEKAVE 490
>pdb|1GK2|A Chain A, Histidine Ammonia-Lyase (Hal) Mutant F329g From
Pseudomonas Putida
pdb|1GK2|B Chain B, Histidine Ammonia-Lyase (Hal) Mutant F329g From
Pseudomonas Putida
pdb|1GK2|C Chain C, Histidine Ammonia-Lyase (Hal) Mutant F329g From
Pseudomonas Putida
pdb|1GK2|D Chain D, Histidine Ammonia-Lyase (Hal) Mutant F329g From
Pseudomonas Putida
Length = 509
Score = 187 bits (475), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 149/512 (29%), Positives = 253/512 (49%), Gaps = 32/512 (6%)
Query: 66 SLTIGQVTAIAAHDSGVKVELAEAARAGVKASSDWVMDSMMKGTDSYGVTTGFGATSHRR 125
+LT+ Q+ AI H + V+++L +A + AS V + + +YG+ TGFG + R
Sbjct: 9 TLTLAQLRAI--HAAPVRLQLDASAAPAIDASVACVEQIIAEDRTAYGINTGFGLLASTR 66
Query: 126 TKQGGA--LQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEIL 183
LQ+ L+ +GI L R M++++N+L +G+SGIR +++
Sbjct: 67 IASHDLENLQRSLVLSHAAGI-------GAPLDDDLVRLIMVLKINSLSRGFSGIRRKVI 119
Query: 184 ETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGQVLNPTEAFN 243
+ + +N + P +PL+G++ ASGDL PL++++ +L G ++ GQ L+ TEA
Sbjct: 120 DALIALVNAEVYPHIPLKGSVGASGDLAPLAHMSLVLLGEGKARY---KGQWLSATEALA 176
Query: 244 LAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEVMNGKPE 303
+AG+ L KEGLAL+NGT + A LF A L + + E + G
Sbjct: 177 VAGLEP--LTLAAKEGLALLNGTQASTAYALRGLFYAEDLYAAAIACGGLSVEAVLGSRS 234
Query: 304 FTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAQKLHEIDPLQKPKQDRYALRTSPQW 363
D H+ + GQI+ AA +L SS V + K D +Q P Y+LR PQ
Sbjct: 235 PFDARIHEARGQRGQIDTAACFRDLLGDSSEVSLSHK--NADKVQDP----YSLRCQPQV 288
Query: 364 LGPQIEVIRAATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASI 423
+G + +R A +++ E N+V+DNPL+ + + GGN P+ ++ DN LAIA I
Sbjct: 289 MGACLTQLRQAAEVLGIEANAVSDNPLVFAAEGDVISGGNGHAEPVAMAADNLALAIAEI 348
Query: 424 GKLLFAQFSELVNDFYNNGLPSNLTGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNH 483
G L + S L+ D + + LP L N ++ GF A++ A+ SE + L++P +
Sbjct: 349 GSLSERRIS-LMMDKHMSQLPPFLV--ENGGVNSGFMIAQVTAAALASENKALSHPHSVD 405
Query: 484 VQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKNTVKNT 543
+ +D S+ + ++ E + + + + + CQ +DLR + LK + K
Sbjct: 406 SLPTSANQEDHVSMAPAAGKRLWEMAENTRGVLAIEWLGACQGLDLR---KGLKTSAKLE 462
Query: 544 VSQVAKRVLTMGVNGELHPSRFCEKDLIKVVD 575
++ A R + + RF D+ K V+
Sbjct: 463 KARQALRSEVAHYDRD----RFFAPDIEKAVE 490
>pdb|2QVE|A Chain A, Crystal Structure Of Sgtam Bound To Mechanism Based
Inhibitor
pdb|2QVE|B Chain B, Crystal Structure Of Sgtam Bound To Mechanism Based
Inhibitor
Length = 526
Score = 186 bits (473), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 162/533 (30%), Positives = 251/533 (47%), Gaps = 45/533 (8%)
Query: 60 VKLGGESLTIGQVTAIAAHDSGVKVELAEAARAGVKASSDWVMDSMMKGTDSYGVTTGFG 119
V + GE+LT+ V +A + V V A+A + S + + YGVTTG+G
Sbjct: 2 VSVDGETLTVEAVRRVAEERATVDVPAESIAKA--QKSREIFEGIAEQNIPIYGVTTGYG 59
Query: 120 ATSHRRTKQGGA--LQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSG 177
+ + + LQ L+R ++G+ RA + R+NTL +G+S
Sbjct: 60 EMIYMQVDKSKEVELQTNLVRSHSAGV-------GPLFAEDEARAIVAARLNTLAKGHSA 112
Query: 178 IRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGQVLN 237
+R ILE + ++LN ITP +P G++ DL PLS++A L G V +G+ +
Sbjct: 113 VRPIILERLAQYLNEGITPAIPEIGSL--GXDLAPLSHVASTLIG---EGYVLRDGRPVE 167
Query: 238 PTEAFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEV 297
+ G+ EL+ KEGLAL+NGT+ +GL + V+ A A +E+++A+ E
Sbjct: 168 TAQVLAERGIEP--LELRFKEGLALINGTSGMTGLGSLVVGRALEQAQQAEIVTALLIEA 225
Query: 298 MNGKPEFTDHLTHKL-KHHPGQIEAAAIMEHILDGSSYVKAAQKLHEIDPLQKPK----- 351
+ G H + + H GQI+ AA M ++ GS L LQK K
Sbjct: 226 VRGSTSPFLAEGHDIARPHEGQIDTAANMRALMRGSGLTVEHADLRR--ELQKDKEAGKD 283
Query: 352 --------QDRYALRTSPQWLGPQIEVIRAATKMIEREINSVNDNPLIDVSRNKALHGGN 403
Q Y+LR PQ +G + + A + E+NS NDNPL + HG N
Sbjct: 284 VQRSEIYLQKAYSLRAIPQVVGAVRDTLYHARHKLRIELNSANDNPLF-FEGKEIFHGAN 342
Query: 404 FQGTPIGVSMDNTRLAIASIGKLLFAQFSELVNDFYNNGLPSNLTGGRNPSLDYGFKGAE 463
F G PI +MD +A+ +G L Q + ++N + GLP L G +P L GF GA+
Sbjct: 343 FHGQPIAFAMDFVTIALTQLGVLAERQINRVLNRHLSYGLPEFLVSG-DPGLHSGFAGAQ 401
Query: 464 IAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAV-DILKLMSSTFLVA 522
+ +E + + T V S NQDV S+GLIS+R + + K+++ +L A
Sbjct: 402 YPATALVAENRTIGPASTQSVPS-NGDNQDVVSMGLISARNARRVLSNNNKILAVEYLAA 460
Query: 523 LCQAIDLRHLEENLKNTVKNTVSQVAKRVLTMGVNGELHPSRFCEKDLIKVVD 575
QA+D+ + L K T V + V T+GV+ R+ D+ V D
Sbjct: 461 -AQAVDISGRFDGLSPAAKATYEAVRRLVPTLGVD------RYMADDIELVAD 506
>pdb|2RJR|A Chain A, Substrate Mimic Bound To Sgtam
pdb|2RJR|B Chain B, Substrate Mimic Bound To Sgtam
pdb|2RJS|A Chain A, Sgtam Bound To Substrate Mimic
pdb|2RJS|B Chain B, Sgtam Bound To Substrate Mimic
Length = 537
Score = 186 bits (472), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 162/533 (30%), Positives = 251/533 (47%), Gaps = 45/533 (8%)
Query: 60 VKLGGESLTIGQVTAIAAHDSGVKVELAEAARAGVKASSDWVMDSMMKGTDSYGVTTGFG 119
V + GE+LT+ V +A + V V A+A + S + + YGVTTG+G
Sbjct: 13 VSVDGETLTVEAVRRVAEERATVDVPAESIAKA--QKSREIFEGIAEQNIPIYGVTTGYG 70
Query: 120 ATSHRRTKQGGA--LQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSG 177
+ + + LQ L+R ++G+ RA + R+NTL +G+S
Sbjct: 71 EMIYMQVDKSKEVELQTNLVRSHSAGV-------GPLFAEDEARAIVAARLNTLAKGHSA 123
Query: 178 IRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGQVLN 237
+R ILE + ++LN ITP +P G++ DL PLS++A L G V +G+ +
Sbjct: 124 VRPIILERLAQYLNEGITPAIPEIGSL--GXDLAPLSHVASTLIG---EGYVLRDGRPVE 178
Query: 238 PTEAFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEV 297
+ G+ EL+ KEGLAL+NGT+ +GL + V+ A A +E+++A+ E
Sbjct: 179 TAQVLAERGIEP--LELRFKEGLALINGTSGMTGLGSLVVGRALEQAQQAEIVTALLIEA 236
Query: 298 MNGKPEFTDHLTHKL-KHHPGQIEAAAIMEHILDGSSYVKAAQKLHEIDPLQKPK----- 351
+ G H + + H GQI+ AA M ++ GS L LQK K
Sbjct: 237 VRGSTSPFLAEGHDIARPHEGQIDTAANMRALMRGSGLTVEHADLRR--ELQKDKEAGKD 294
Query: 352 --------QDRYALRTSPQWLGPQIEVIRAATKMIEREINSVNDNPLIDVSRNKALHGGN 403
Q Y+LR PQ +G + + A + E+NS NDNPL + HG N
Sbjct: 295 VQRSEIYLQKAYSLRAIPQVVGAVRDTLYHARHKLRIELNSANDNPLF-FEGKEIFHGAN 353
Query: 404 FQGTPIGVSMDNTRLAIASIGKLLFAQFSELVNDFYNNGLPSNLTGGRNPSLDYGFKGAE 463
F G PI +MD +A+ +G L Q + ++N + GLP L G +P L GF GA+
Sbjct: 354 FHGQPIAFAMDFVTIALTQLGVLAERQINRVLNRHLSYGLPEFLVSG-DPGLHSGFAGAQ 412
Query: 464 IAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAV-DILKLMSSTFLVA 522
+ +E + + T V S NQDV S+GLIS+R + + K+++ +L A
Sbjct: 413 YPATALVAENRTIGPASTQSVPS-NGDNQDVVSMGLISARNARRVLSNNNKILAVEYLAA 471
Query: 523 LCQAIDLRHLEENLKNTVKNTVSQVAKRVLTMGVNGELHPSRFCEKDLIKVVD 575
QA+D+ + L K T V + V T+GV+ R+ D+ V D
Sbjct: 472 -AQAVDISGRFDGLSPAAKATYEAVRRLVPTLGVD------RYMADDIELVAD 517
>pdb|2OHY|A Chain A, X-Ray Crystal Structure Of Tyrosine Aminomutase From
Streptomyces Globisporus
pdb|2OHY|B Chain B, X-Ray Crystal Structure Of Tyrosine Aminomutase From
Streptomyces Globisporus
Length = 539
Score = 186 bits (472), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 162/533 (30%), Positives = 251/533 (47%), Gaps = 45/533 (8%)
Query: 60 VKLGGESLTIGQVTAIAAHDSGVKVELAEAARAGVKASSDWVMDSMMKGTDSYGVTTGFG 119
V + GE+LT+ V +A + V V A+A + S + + YGVTTG+G
Sbjct: 15 VSVDGETLTVEAVRRVAEERATVDVPAESIAKA--QKSREIFEGIAEQNIPIYGVTTGYG 72
Query: 120 ATSHRRTKQGGA--LQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSG 177
+ + + LQ L+R ++G+ RA + R+NTL +G+S
Sbjct: 73 EMIYMQVDKSKEVELQTNLVRSHSAGV-------GPLFAEDEARAIVAARLNTLAKGHSA 125
Query: 178 IRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGQVLN 237
+R ILE + ++LN ITP +P G++ DL PLS++A L G V +G+ +
Sbjct: 126 VRPIILERLAQYLNEGITPAIPEIGSL--GXDLAPLSHVASTLIG---EGYVLRDGRPVE 180
Query: 238 PTEAFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEV 297
+ G+ EL+ KEGLAL+NGT+ +GL + V+ A A +E+++A+ E
Sbjct: 181 TAQVLAERGIEP--LELRFKEGLALINGTSGMTGLGSLVVGRALEQAQQAEIVTALLIEA 238
Query: 298 MNGKPEFTDHLTHKL-KHHPGQIEAAAIMEHILDGSSYVKAAQKLHEIDPLQKPK----- 351
+ G H + + H GQI+ AA M ++ GS L LQK K
Sbjct: 239 VRGSTSPFLAEGHDIARPHEGQIDTAANMRALMRGSGLTVEHADLRR--ELQKDKEAGKD 296
Query: 352 --------QDRYALRTSPQWLGPQIEVIRAATKMIEREINSVNDNPLIDVSRNKALHGGN 403
Q Y+LR PQ +G + + A + E+NS NDNPL + HG N
Sbjct: 297 VQRSEIYLQKAYSLRAIPQVVGAVRDTLYHARHKLRIELNSANDNPLF-FEGKEIFHGAN 355
Query: 404 FQGTPIGVSMDNTRLAIASIGKLLFAQFSELVNDFYNNGLPSNLTGGRNPSLDYGFKGAE 463
F G PI +MD +A+ +G L Q + ++N + GLP L G +P L GF GA+
Sbjct: 356 FHGQPIAFAMDFVTIALTQLGVLAERQINRVLNRHLSYGLPEFLVSG-DPGLHSGFAGAQ 414
Query: 464 IAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAV-DILKLMSSTFLVA 522
+ +E + + T V S NQDV S+GLIS+R + + K+++ +L A
Sbjct: 415 YPATALVAENRTIGPASTQSVPS-NGDNQDVVSMGLISARNARRVLSNNNKILAVEYLAA 473
Query: 523 LCQAIDLRHLEENLKNTVKNTVSQVAKRVLTMGVNGELHPSRFCEKDLIKVVD 575
QA+D+ + L K T V + V T+GV+ R+ D+ V D
Sbjct: 474 -AQAVDISGRFDGLSPAAKATYEAVRRLVPTLGVD------RYMADDIELVAD 519
>pdb|3KDZ|A Chain A, X-Ray Crystal Structure Of A Tyrosine Aminomutase Mutant
Construct With Bound Ligand
pdb|3KDZ|B Chain B, X-Ray Crystal Structure Of A Tyrosine Aminomutase Mutant
Construct With Bound Ligand
Length = 537
Score = 185 bits (469), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 161/533 (30%), Positives = 251/533 (47%), Gaps = 45/533 (8%)
Query: 60 VKLGGESLTIGQVTAIAAHDSGVKVELAEAARAGVKASSDWVMDSMMKGTDSYGVTTGFG 119
V + GE+LT+ V +A + V V A+A + S + + +GVTTG+G
Sbjct: 13 VSVDGETLTVEAVRRVAEERATVDVPAESIAKA--QKSREIFEGIAEQNIPIFGVTTGYG 70
Query: 120 ATSHRRTKQGGA--LQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSG 177
+ + + LQ L+R ++G+ RA + R+NTL +G+S
Sbjct: 71 EMIYMQVDKSKEVELQTNLVRSHSAGV-------GPLFAEDEARAIVAARLNTLAKGHSA 123
Query: 178 IRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGQVLN 237
+R ILE + ++LN ITP +P G++ DL PLS++A L G V +G+ +
Sbjct: 124 VRPIILERLAQYLNEGITPAIPEIGSL--GXDLAPLSHVASTLIG---EGYVLRDGRPVE 178
Query: 238 PTEAFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEV 297
+ G+ EL+ KEGLAL+NGT+ +GL + V+ A A +E+++A+ E
Sbjct: 179 TAQVLAERGIEP--LELRFKEGLALINGTSGMTGLGSLVVGRALEQAQQAEIVTALLIEA 236
Query: 298 MNGKPEFTDHLTHKL-KHHPGQIEAAAIMEHILDGSSYVKAAQKLHEIDPLQKPK----- 351
+ G H + + H GQI+ AA M ++ GS L LQK K
Sbjct: 237 VRGSTSPFLAEGHDIARPHEGQIDTAANMRALMRGSGLTVEHADLRR--ELQKDKEAGKD 294
Query: 352 --------QDRYALRTSPQWLGPQIEVIRAATKMIEREINSVNDNPLIDVSRNKALHGGN 403
Q Y+LR PQ +G + + A + E+NS NDNPL + HG N
Sbjct: 295 VQRSEIYLQKAYSLRAIPQVVGAVRDTLYHARHKLRIELNSANDNPLF-FEGKEIFHGAN 353
Query: 404 FQGTPIGVSMDNTRLAIASIGKLLFAQFSELVNDFYNNGLPSNLTGGRNPSLDYGFKGAE 463
F G PI +MD +A+ +G L Q + ++N + GLP L G +P L GF GA+
Sbjct: 354 FHGQPIAFAMDFVTIALTQLGVLAERQINRVLNRHLSYGLPEFLVSG-DPGLHSGFAGAQ 412
Query: 464 IAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAV-DILKLMSSTFLVA 522
+ +E + + T V S NQDV S+GLIS+R + + K+++ +L A
Sbjct: 413 YPATALVAENRTIGPASTQSVPS-NGDNQDVVSMGLISARNARRVLSNNNKILAVEYLAA 471
Query: 523 LCQAIDLRHLEENLKNTVKNTVSQVAKRVLTMGVNGELHPSRFCEKDLIKVVD 575
QA+D+ + L K T V + V T+GV+ R+ D+ V D
Sbjct: 472 -AQAVDISGRFDGLSPAAKATYEAVRRLVPTLGVD------RYMADDIELVAD 517
>pdb|2O78|A Chain A, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant) Complexed With Cinnamic Acid
pdb|2O78|B Chain B, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant) Complexed With Cinnamic Acid
pdb|2O78|C Chain C, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant) Complexed With Cinnamic Acid
pdb|2O78|D Chain D, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant) Complexed With Cinnamic Acid
pdb|2O78|E Chain E, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant) Complexed With Cinnamic Acid
pdb|2O78|F Chain F, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant) Complexed With Cinnamic Acid
pdb|2O78|G Chain G, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant) Complexed With Cinnamic Acid
pdb|2O78|H Chain H, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant) Complexed With Cinnamic Acid
pdb|2O7E|A Chain A, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant), Bound To 2-aminoindan-2-phosphonic
Acid
pdb|2O7E|B Chain B, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant), Bound To 2-aminoindan-2-phosphonic
Acid
pdb|2O7E|C Chain C, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant), Bound To 2-aminoindan-2-phosphonic
Acid
pdb|2O7E|D Chain D, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant), Bound To 2-aminoindan-2-phosphonic
Acid
pdb|2O7E|E Chain E, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant), Bound To 2-aminoindan-2-phosphonic
Acid
pdb|2O7E|F Chain F, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant), Bound To 2-aminoindan-2-phosphonic
Acid
pdb|2O7E|G Chain G, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant), Bound To 2-aminoindan-2-phosphonic
Acid
pdb|2O7E|H Chain H, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant), Bound To 2-aminoindan-2-phosphonic
Acid
pdb|2O7F|A Chain A, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
(His89phe Variant), Complexed With Coumaric Acid
pdb|2O7F|B Chain B, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
(His89phe Variant), Complexed With Coumaric Acid
pdb|2O7F|C Chain C, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
(His89phe Variant), Complexed With Coumaric Acid
pdb|2O7F|D Chain D, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
(His89phe Variant), Complexed With Coumaric Acid
pdb|2O7F|E Chain E, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
(His89phe Variant), Complexed With Coumaric Acid
pdb|2O7F|F Chain F, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
(His89phe Variant), Complexed With Coumaric Acid
pdb|2O7F|G Chain G, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
(His89phe Variant), Complexed With Coumaric Acid
pdb|2O7F|H Chain H, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
(His89phe Variant), Complexed With Coumaric Acid
Length = 521
Score = 184 bits (468), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 147/484 (30%), Positives = 239/484 (49%), Gaps = 29/484 (5%)
Query: 57 RPVVKLGGESLTIGQVTAIAAHDSGVKVELAEAARAGVKASSDWVMDSMMKGTDSYGVTT 116
+P V+L + + Q A+A+ G ++ LA AR +AS + + + YG+TT
Sbjct: 8 KPAVELD-RHIDLDQAHAVAS--GGARIVLAPPARDRCRASEARLGAVIREARHVYGLTT 64
Query: 117 GFGATSHR--RTKQGGALQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQG 174
GFG ++R + LQ L+ FL SG+ L + RA +L R+ ++ QG
Sbjct: 65 GFGPLANRLISGENVRTLQANLVHFLASGV-------GPVLDWTTARAMVLARLVSIAQG 117
Query: 175 YSGIRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGQ 234
SG + + LN + P +P RGT+ DL PL+++ L GR + + +G
Sbjct: 118 ASGASEGTIARLIDLLNSELAPAVPSRGTV--GXDLTPLAHMVLCLQGRGDF--LDRDGT 173
Query: 235 VLNPTEAFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIF 294
L+ E + +L ++ LALVNGT+ +G+A L + L+A+
Sbjct: 174 RLDGAEGLRRGRLQP--LDLSHRDALALVNGTSAMTGIALVNAHACRHLGNWAVALTALL 231
Query: 295 AEVMNGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSS----YVKAAQKLHEIDPLQKP 350
AE + G+ E L+ HPGQ +AAA + +DGS+ +V A ++L D +P
Sbjct: 232 AECLRGRTEAWAAALSDLRPHPGQKDAAARLRARVDGSARVVRHVIAERRLDAGDIGTEP 291
Query: 351 K--QDRYALRTSPQWLGPQIEVIRAATKMIEREINSVNDNPLIDVSRN-KALHGGNFQGT 407
+ QD Y+LR +PQ LG + + +++ E+N+V DNP+ + ALHGGNF G
Sbjct: 292 EAGQDAYSLRCAPQVLGAGFDTLAWHDRVLTIELNAVTDNPVFPPDGSVPALHGGNFMGQ 351
Query: 408 PIGVSMDNTRLAIASIGKLLFAQFSELVNDFYNNGLPSNLTGGRNPS-LDYGFKGAEIAM 466
+ ++ D A+ + L Q + L ++ N GLP L R P+ L+ GF GA++
Sbjct: 352 HVALTSDALATAVTVLAGLAERQIARLTDERLNRGLPPFLH--RGPAGLNSGFMGAQVTA 409
Query: 467 ASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQA 526
+ +E++ P + H S NQDV SLG I++R E +D + + + L QA
Sbjct: 410 TALLAEMRA-TGPASIHSISTNAANQDVVSLGTIAARLCREKIDRWAEILAILALCLAQA 468
Query: 527 IDLR 530
+LR
Sbjct: 469 AELR 472
>pdb|2O6Y|A Chain A, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
pdb|2O6Y|B Chain B, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
pdb|2O6Y|C Chain C, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
pdb|2O6Y|D Chain D, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
pdb|2O6Y|E Chain E, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
pdb|2O6Y|F Chain F, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
pdb|2O6Y|G Chain G, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
pdb|2O6Y|H Chain H, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
pdb|2O7B|A Chain A, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Coumarate
pdb|2O7B|B Chain B, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Coumarate
pdb|2O7B|C Chain C, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Coumarate
pdb|2O7B|D Chain D, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Coumarate
pdb|2O7B|E Chain E, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Coumarate
pdb|2O7B|F Chain F, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Coumarate
pdb|2O7B|G Chain G, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Coumarate
pdb|2O7B|H Chain H, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Coumarate
pdb|2O7D|A Chain A, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Caffeate
pdb|2O7D|B Chain B, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Caffeate
pdb|2O7D|C Chain C, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Caffeate
pdb|2O7D|D Chain D, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Caffeate
pdb|2O7D|E Chain E, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Caffeate
pdb|2O7D|F Chain F, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Caffeate
pdb|2O7D|G Chain G, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Caffeate
pdb|2O7D|H Chain H, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Caffeate
Length = 521
Score = 181 bits (460), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 146/484 (30%), Positives = 238/484 (49%), Gaps = 29/484 (5%)
Query: 57 RPVVKLGGESLTIGQVTAIAAHDSGVKVELAEAARAGVKASSDWVMDSMMKGTDSYGVTT 116
+P V+L + + Q A+A+ G ++ LA AR +AS + + + YG+TT
Sbjct: 8 KPAVELD-RHIDLDQAHAVAS--GGARIVLAPPARDRCRASEARLGAVIREARHVYGLTT 64
Query: 117 GFGATSHR--RTKQGGALQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQG 174
GFG ++R + LQ L+ L SG+ L + RA +L R+ ++ QG
Sbjct: 65 GFGPLANRLISGENVRTLQANLVHHLASGV-------GPVLDWTTARAMVLARLVSIAQG 117
Query: 175 YSGIRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGQ 234
SG + + LN + P +P RGT+ DL PL+++ L GR + + +G
Sbjct: 118 ASGASEGTIARLIDLLNSELAPAVPSRGTV--GXDLTPLAHMVLCLQGRGDF--LDRDGT 173
Query: 235 VLNPTEAFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIF 294
L+ E + +L ++ LALVNGT+ +G+A L + L+A+
Sbjct: 174 RLDGAEGLRRGRLQP--LDLSHRDALALVNGTSAMTGIALVNAHACRHLGNWAVALTALL 231
Query: 295 AEVMNGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSS----YVKAAQKLHEIDPLQKP 350
AE + G+ E L+ HPGQ +AAA + +DGS+ +V A ++L D +P
Sbjct: 232 AECLRGRTEAWAAALSDLRPHPGQKDAAARLRARVDGSARVVRHVIAERRLDAGDIGTEP 291
Query: 351 K--QDRYALRTSPQWLGPQIEVIRAATKMIEREINSVNDNPLIDVSRN-KALHGGNFQGT 407
+ QD Y+LR +PQ LG + + +++ E+N+V DNP+ + ALHGGNF G
Sbjct: 292 EAGQDAYSLRCAPQVLGAGFDTLAWHDRVLTIELNAVTDNPVFPPDGSVPALHGGNFMGQ 351
Query: 408 PIGVSMDNTRLAIASIGKLLFAQFSELVNDFYNNGLPSNLTGGRNPS-LDYGFKGAEIAM 466
+ ++ D A+ + L Q + L ++ N GLP L R P+ L+ GF GA++
Sbjct: 352 HVALTSDALATAVTVLAGLAERQIARLTDERLNRGLPPFLH--RGPAGLNSGFMGAQVTA 409
Query: 467 ASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQA 526
+ +E++ P + H S NQDV SLG I++R E +D + + + L QA
Sbjct: 410 TALLAEMRA-TGPASIHSISTNAANQDVVSLGTIAARLCREKIDRWAEILAILALCLAQA 468
Query: 527 IDLR 530
+LR
Sbjct: 469 AELR 472
>pdb|1GKM|A Chain A, Histidine Ammonia-Lyase (Hal) From Pseudomonas Putida
Inhibited With L-Cysteine
pdb|1B8F|A Chain A, Histidine Ammonia-Lyase (Hal) From Pseudomonas Putida
Length = 507
Score = 181 bits (458), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 147/512 (28%), Positives = 251/512 (49%), Gaps = 34/512 (6%)
Query: 66 SLTIGQVTAIAAHDSGVKVELAEAARAGVKASSDWVMDSMMKGTDSYGVTTGFGATSHRR 125
+LT+ Q+ AI H + V+++L +A + AS V + + +YG+ TGFG + R
Sbjct: 9 TLTLAQLRAI--HAAPVRLQLDASAAPAIDASVACVEQIIAEDRTAYGINTGFGLLASTR 66
Query: 126 TKQGGA--LQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEIL 183
LQ+ L+ +GI L R M++++N+L +G+SGIR +++
Sbjct: 67 IASHDLENLQRSLVLSHAAGI-------GAPLDDDLVRLIMVLKINSLSRGFSGIRRKVI 119
Query: 184 ETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGQVLNPTEAFN 243
+ + +N + P +PL+G++ DL PL++++ +L G ++ GQ L+ TEA
Sbjct: 120 DALIALVNAEVYPHIPLKGSV--GXDLAPLAHMSLVLLGEGKARY---KGQWLSATEALA 174
Query: 244 LAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEVMNGKPE 303
+AG+ L KEGLAL+NGT + A LF A L + + E + G
Sbjct: 175 VAGLEP--LTLAAKEGLALLNGTQASTAYALRGLFYAEDLYAAAIACGGLSVEAVLGSRS 232
Query: 304 FTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAQKLHEIDPLQKPKQDRYALRTSPQW 363
D H+ + GQI+ AA +L SS V + K D +Q P Y+LR PQ
Sbjct: 233 PFDARIHEARGQRGQIDTAACFRDLLGDSSEVSLSHK--NADKVQDP----YSLRCQPQV 286
Query: 364 LGPQIEVIRAATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASI 423
+G + +R A +++ E N+V+DNPL+ + + GGNF P+ ++ DN LAIA I
Sbjct: 287 MGACLTQLRQAAEVLGIEANAVSDNPLVFAAEGDVISGGNFHAEPVAMAADNLALAIAEI 346
Query: 424 GKLLFAQFSELVNDFYNNGLPSNLTGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNH 483
G L + S L+ D + + LP L N ++ GF A++ A+ SE + L++P +
Sbjct: 347 GSLSERRIS-LMMDKHMSQLPPFLV--ENGGVNSGFMIAQVTAAALASENKALSHPHSVD 403
Query: 484 VQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKNTVKNT 543
+ +D S+ + ++ E + + + + + CQ +DLR + LK + K
Sbjct: 404 SLPTSANQEDHVSMAPAAGKRLWEMAENTRGVLAIEWLGACQGLDLR---KGLKTSAKLE 460
Query: 544 VSQVAKRVLTMGVNGELHPSRFCEKDLIKVVD 575
++ A R + + RF D+ K V+
Sbjct: 461 KARQALRSEVAHYDRD----RFFAPDIEKAVE 488
>pdb|1GKJ|A Chain A, Histidine Ammonia-Lyase (Hal) Mutant Y280f From
Pseudomonas Putida
Length = 507
Score = 179 bits (454), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 146/512 (28%), Positives = 251/512 (49%), Gaps = 34/512 (6%)
Query: 66 SLTIGQVTAIAAHDSGVKVELAEAARAGVKASSDWVMDSMMKGTDSYGVTTGFGATSHRR 125
+LT+ Q+ AI H + V+++L +A + AS V + + +YG+ TGFG + R
Sbjct: 9 TLTLAQLRAI--HAAPVRLQLDASAAPAIDASVACVEQIIAEDRTAYGINTGFGLLASTR 66
Query: 126 TKQGGA--LQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEIL 183
LQ+ L+ +GI L R M++++N+L +G+SGIR +++
Sbjct: 67 IASHDLENLQRSLVLSHAAGI-------GAPLDDDLVRLIMVLKINSLSRGFSGIRRKVI 119
Query: 184 ETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGQVLNPTEAFN 243
+ + +N + P +PL+G++ DL PL++++ +L G ++ GQ L+ TEA
Sbjct: 120 DALIALVNAEVYPHIPLKGSV--GXDLAPLAHMSLVLLGEGKARY---KGQWLSATEALA 174
Query: 244 LAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEVMNGKPE 303
+AG+ L KEGLAL+NGT + A LF A L + + E + G
Sbjct: 175 VAGLEP--LTLAAKEGLALLNGTQASTAYALRGLFYAEDLYAAAIACGGLSVEAVLGSRS 232
Query: 304 FTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAQKLHEIDPLQKPKQDRYALRTSPQW 363
D H+ + GQI+ AA +L SS V + K D +Q P ++LR PQ
Sbjct: 233 PFDARIHEARGQRGQIDTAACFRDLLGDSSEVSLSHK--NADKVQDP----FSLRCQPQV 286
Query: 364 LGPQIEVIRAATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASI 423
+G + +R A +++ E N+V+DNPL+ + + GGNF P+ ++ DN LAIA I
Sbjct: 287 MGACLTQLRQAAEVLGIEANAVSDNPLVFAAEGDVISGGNFHAEPVAMAADNLALAIAEI 346
Query: 424 GKLLFAQFSELVNDFYNNGLPSNLTGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNH 483
G L + S L+ D + + LP L N ++ GF A++ A+ SE + L++P +
Sbjct: 347 GSLSERRIS-LMMDKHMSQLPPFLV--ENGGVNSGFMIAQVTAAALASENKALSHPHSVD 403
Query: 484 VQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKNTVKNT 543
+ +D S+ + ++ E + + + + + CQ +DLR + LK + K
Sbjct: 404 SLPTSANQEDHVSMAPAAGKRLWEMAENTRGVLAIEWLGACQGLDLR---KGLKTSAKLE 460
Query: 544 VSQVAKRVLTMGVNGELHPSRFCEKDLIKVVD 575
++ A R + + RF D+ K V+
Sbjct: 461 KARQALRSEVAHYDRD----RFFAPDIEKAVE 488
>pdb|1EB4|A Chain A, Histidine Ammonia-Lyase (Hal) Mutant F329a From
Pseudomonas Putida
Length = 507
Score = 177 bits (449), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 146/512 (28%), Positives = 250/512 (48%), Gaps = 34/512 (6%)
Query: 66 SLTIGQVTAIAAHDSGVKVELAEAARAGVKASSDWVMDSMMKGTDSYGVTTGFGATSHRR 125
+LT+ Q+ AI H + V+++L +A + AS V + + +YG+ TGFG + R
Sbjct: 9 TLTLAQLRAI--HAAPVRLQLDASAAPAIDASVACVEQIIAEDRTAYGINTGFGLLASTR 66
Query: 126 TKQGGA--LQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEIL 183
LQ+ L+ +GI L R M++++N+L +G+SGIR +++
Sbjct: 67 IASHDLENLQRSLVLSHAAGI-------GAPLDDDLVRLIMVLKINSLSRGFSGIRRKVI 119
Query: 184 ETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGQVLNPTEAFN 243
+ + +N + P +PL+G++ DL PL++++ +L G ++ GQ L+ TEA
Sbjct: 120 DALIALVNAEVYPHIPLKGSV--GXDLAPLAHMSLVLLGEGKARY---KGQWLSATEALA 174
Query: 244 LAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEVMNGKPE 303
+AG+ L KEGLAL+NGT + A LF A L + + E + G
Sbjct: 175 VAGLEP--LTLAAKEGLALLNGTQASTAYALRGLFYAEDLYAAAIACGGLSVEAVLGSRS 232
Query: 304 FTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAQKLHEIDPLQKPKQDRYALRTSPQW 363
D H+ + GQI+ AA +L SS V + K D +Q P Y+LR PQ
Sbjct: 233 PFDARIHEARGQRGQIDTAACFRDLLGDSSEVSLSHK--NADKVQDP----YSLRCQPQV 286
Query: 364 LGPQIEVIRAATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASI 423
+G + +R A +++ E N+V+DNPL+ + + GGN P+ ++ DN LAIA I
Sbjct: 287 MGACLTQLRQAAEVLGIEANAVSDNPLVFAAEGDVISGGNAHAEPVAMAADNLALAIAEI 346
Query: 424 GKLLFAQFSELVNDFYNNGLPSNLTGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNH 483
G L + S L+ D + + LP L N ++ GF A++ A+ SE + L++P +
Sbjct: 347 GSLSERRIS-LMMDKHMSQLPPFLV--ENGGVNSGFMIAQVTAAALASENKALSHPHSVD 403
Query: 484 VQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKNTVKNT 543
+ +D S+ + ++ E + + + + + CQ +DLR + LK + K
Sbjct: 404 SLPTSANQEDHVSMAPAAGKRLWEMAENTRGVLAIEWLGACQGLDLR---KGLKTSAKLE 460
Query: 544 VSQVAKRVLTMGVNGELHPSRFCEKDLIKVVD 575
++ A R + + RF D+ K V+
Sbjct: 461 KARQALRSEVAHYDRD----RFFAPDIEKAVE 488
>pdb|3UNV|A Chain A, Pantoea Agglomerans Phenylalanine Aminomutase
pdb|3UNV|B Chain B, Pantoea Agglomerans Phenylalanine Aminomutase
Length = 547
Score = 176 bits (446), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 150/534 (28%), Positives = 246/534 (46%), Gaps = 65/534 (12%)
Query: 68 TIGQVTAIAAH-DSGVKVELAEAARAGVK--------------ASSDWVMDSMMKGTDS- 111
T+ Q+ + H SG + L E ARA S +++SM+
Sbjct: 18 TLSQIERTSFHISSGKDISLEEIARAARDHQPVTLHDEVVNRVTRSRSILESMVSDERVI 77
Query: 112 YGVTTGFGATSHRRT--KQGGALQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVN 169
YGV T G + + LQ LI + T + RA ML R+
Sbjct: 78 YGVNTSMGGFVNYIVPIAKASELQNNLINAV-------ATNVGKYFDDTTVRATMLARIV 130
Query: 170 TLLQGYSGIRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAV 229
+L +G S I + + + N I PC+P +G++ DL PL+ IA + TG+ ++
Sbjct: 131 SLSRGNSAISIVNFKKLIEIYNQGIVPCIPEKGSL--GXDLGPLAAIALVCTGQWKARY- 187
Query: 230 GPNGQVLNPTEAFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEV 289
G+ ++ A AG++ EL KEGLAL+NGT+ GL + E L
Sbjct: 188 --QGEQMSGAMALEKAGISP--MELSFKEGLALINGTSAMVGLGVLLYDEVKRLFDTYLT 243
Query: 290 LSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAA-IMEHILDGSSYVKA--AQKL--HEI 344
++++ E ++GK + + H++K H GQ+E A I E + D S V +KL E+
Sbjct: 244 VTSLSIEGLHGKTKPFEPAVHRMKPHQGQLEVATTIWETLADSSLAVNEHEVEKLIAEEM 303
Query: 345 DPLQKPK----QDRYALRTSPQWLGPQIEVIRAATKMIEREINSVNDNPLIDVSRNKALH 400
D L K +D Y++R +PQ LGP + ++ + + E+NS NDNPLID + + H
Sbjct: 304 DGLVKASNHQIEDAYSIRCTPQILGPVADTLKNIKQTLTNELNSSNDNPLIDQTTEEVFH 363
Query: 401 GGNFQGTPIGVSMDNTRLAIASIGKLLFAQFSELVNDFYNNGLPSNLTGGRNPSLDYGFK 460
G+F G + ++MD+ +A+ ++ L + ++ +NGLP L N L G
Sbjct: 364 NGHFHGQYVSMAMDHLNIALVTMMNLANRRIDRFMDKSNSNGLPPFLC-AENAGLRLGLM 422
Query: 461 GAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFL 520
G + AS +E + P++ S QD+ S GL+++R+ E + LK + S L
Sbjct: 423 GGQFMTASITAESRASCMPMSIQSLSTTGDFQDIVSFGLVAARRVREQLKNLKYVFSFEL 482
Query: 521 VALCQAIDLR---------------------HLEENLKNTVKNTVSQVAKRVLT 553
+ CQA+D+R +LEE+ T+ + + +A+ VLT
Sbjct: 483 LCACQAVDIRGTAGLSKRTRALYDKTRTLVPYLEED--KTISDYIESIAQTVLT 534
>pdb|1SQB|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin
pdb|1SQP|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Myxothiazol
Length = 480
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 65/155 (41%), Gaps = 23/155 (14%)
Query: 295 AEVMNGKPEFTDHLTHK-LKHHPG---QIEAAAIMEHILDGSSYVKAAQKLHEIDPLQKP 350
+E NG F +HL K K+ PG + E ++ H+ ++Y + I L K
Sbjct: 83 SEKNNGAGYFVEHLAFKGTKNRPGNALEKEVESMGAHL---NAYSTREHTAYYIKALSKD 139
Query: 351 KQDRYALRTSPQWLGPQIEVIRAATKMIEREINSV------NDNPLIDVSRNKALHGGNF 404
L + + L ++ IE+E + + ND + DV N LH F
Sbjct: 140 ------LPKAVELLADIVQNCSLEDSQIEKERDVILQELQENDTSMRDVVFNY-LHATAF 192
Query: 405 QGTPIGVSMDNTRLAIASIGKLLFAQFSELVNDFY 439
QGTP+ S++ ++ KL A +E ++ Y
Sbjct: 193 QGTPLAQSVEGPS---ENVRKLSRADLTEYLSRHY 224
>pdb|1BGY|A Chain A, Cytochrome Bc1 Complex From Bovine
pdb|1BGY|M Chain M, Cytochrome Bc1 Complex From Bovine
pdb|1BE3|A Chain A, Cytochrome Bc1 Complex From Bovine
pdb|1L0L|A Chain A, Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex
With A Bound Fungicide Famoxadone
pdb|1L0N|A Chain A, Native Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex
pdb|1NTK|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1 In
Complex With Antimycin A1
pdb|1NTM|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
At 2.4 Angstrom
pdb|1NTZ|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
Bound With Ubiquinone
pdb|1NU1|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complexed With 2- Nonyl-4-Hydroxyquinoline N-Oxide
(Nqno)
pdb|1PP9|A Chain A, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PP9|N Chain N, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PPJ|A Chain A, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1PPJ|N Chain N, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|2A06|A Chain A, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|2A06|N Chain N, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1SQV|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Uhdbt
pdb|1SQX|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Stigmatellin
A
pdb|1SQQ|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Methoxy
Acrylate Stilbene (Moas)
pdb|2FYU|A Chain A, Crystal Structure Of Bovine Heart Mitochondrial Bc1 With
Jg144 Inhibitor
pdb|2YBB|A Chain A, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|2YBB|AA Chain a, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 446
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 65/155 (41%), Gaps = 23/155 (14%)
Query: 295 AEVMNGKPEFTDHLTHK-LKHHPG---QIEAAAIMEHILDGSSYVKAAQKLHEIDPLQKP 350
+E NG F +HL K K+ PG + E ++ H+ ++Y + I L K
Sbjct: 49 SEKNNGAGYFVEHLAFKGTKNRPGNALEKEVESMGAHL---NAYSTREHTAYYIKALSKD 105
Query: 351 KQDRYALRTSPQWLGPQIEVIRAATKMIEREINSV------NDNPLIDVSRNKALHGGNF 404
L + + L ++ IE+E + + ND + DV N LH F
Sbjct: 106 ------LPKAVELLADIVQNCSLEDSQIEKERDVILQELQENDTSMRDVVFNY-LHATAF 158
Query: 405 QGTPIGVSMDNTRLAIASIGKLLFAQFSELVNDFY 439
QGTP+ S++ ++ KL A +E ++ Y
Sbjct: 159 QGTPLAQSVEGPS---ENVRKLSRADLTEYLSRHY 190
>pdb|1QCR|A Chain A, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex, Alpha Carbon Atoms Only
Length = 446
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 65/155 (41%), Gaps = 23/155 (14%)
Query: 295 AEVMNGKPEFTDHLTHK-LKHHPG---QIEAAAIMEHILDGSSYVKAAQKLHEIDPLQKP 350
+E NG F +HL K K+ PG + E ++ H+ ++Y + I L K
Sbjct: 49 SEKNNGAGYFVEHLAFKGTKNRPGNALEKEVESMGAHL---NAYSTREHTAYYIKALSKD 105
Query: 351 KQDRYALRTSPQWLGPQIEVIRAATKMIEREINSV------NDNPLIDVSRNKALHGGNF 404
L + + L ++ IE+E + + ND + DV N LH F
Sbjct: 106 ------LPKAVELLADIVQNCSLEDSQIEKERDVILQELQENDTSMRDVVFNY-LHATAF 158
Query: 405 QGTPIGVSMDNTRLAIASIGKLLFAQFSELVNDFY 439
QGTP+ S++ ++ KL A +E ++ Y
Sbjct: 159 QGTPLAQSVEGPS---ENVRKLSRADLTEYLSRHY 190
>pdb|3I7J|A Chain A, Crystal Structure Of A Beta-Lactamase (Mb2281c) From
Mycobacterium Bovis, Northeast Structural Genomics
Consortium Target Mbr246
pdb|3I7J|B Chain B, Crystal Structure Of A Beta-Lactamase (Mb2281c) From
Mycobacterium Bovis, Northeast Structural Genomics
Consortium Target Mbr246
Length = 280
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 225 NSKAVGPNGQVLNPTEAFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILA 284
NSK+ G+ N T F G + GF + PK LALV TA G A L+ A A
Sbjct: 208 NSKSPHWTGEC-NSTRTFGHFGQSGGFIWVDPKADLALVVLTARDFGDWALDLWPAISDA 266
Query: 285 IMSE 288
+++E
Sbjct: 267 VLAE 270
>pdb|2V1Y|A Chain A, Structure Of A Phosphoinositide 3-Kinase Alpha Adaptor-
Binding Domain (Abd) In A Complex With The Ish2 Domain
From P85 Alpha
Length = 108
Score = 29.3 bits (64), Expect = 8.8, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 657 KECRSYPLYKIVREEIGTSLLTGEKVRSPGEEFDKVFAAMCEGKLIDPMLECLK 710
KE R YPL++++++E + + + EEF +C+ +L P L+ ++
Sbjct: 51 KEARKYPLHQLLQDE-SSYIFVSVTQEAEREEFFDETRRLCDLRLFQPFLKVIE 103
>pdb|1XI3|A Chain A, Thiamine Phosphate Pyrophosphorylase From Pyrococcus
Furiosus Pfu-1255191-001
pdb|1XI3|B Chain B, Thiamine Phosphate Pyrophosphorylase From Pyrococcus
Furiosus Pfu-1255191-001
Length = 215
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 11/60 (18%)
Query: 634 LPKEVEIARTELESGNAAIANRIKECRSYPLYKIVREEIGTSLLTGEKVRSPGEEFDKVF 693
L EVE R LE G AI RIK + +Y+I G+ +R E+D +F
Sbjct: 25 LKPEVESVREALEGGATAIQMRIKNAPTREMYEI-----------GKTLRQLTREYDALF 73
>pdb|2RD0|A Chain A, Structure Of A Human P110alpha/p85alpha Complex
Length = 1096
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 656 IKECRSYPLYKIVREEIGTSLLTGEKVRSPGEEFDKVFAAMCEGKLIDPMLECLK 710
KE R YPL++++++E + + + EEF +C+ +L P L+ ++
Sbjct: 78 FKEARKYPLHQLLQDE-SSYIFVSVTQEAEREEFFDETRRLCDLRLFQPFLKVIE 131
>pdb|3HIZ|A Chain A, Crystal Structure Of P110alpha H1047r Mutant In Complex
With Nish2 Of P85alpha
Length = 1096
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 656 IKECRSYPLYKIVREEIGTSLLTGEKVRSPGEEFDKVFAAMCEGKLIDPMLECLK 710
KE R YPL++++++E + + + EEF +C+ +L P L+ ++
Sbjct: 78 FKEARKYPLHQLLQDE-SSYIFVSVTQEAEREEFFDETRRLCDLRLFQPFLKVIE 131
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,522,070
Number of Sequences: 62578
Number of extensions: 846908
Number of successful extensions: 2198
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 2059
Number of HSP's gapped (non-prelim): 46
length of query: 722
length of database: 14,973,337
effective HSP length: 106
effective length of query: 616
effective length of database: 8,340,069
effective search space: 5137482504
effective search space used: 5137482504
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)