Query 004955
Match_columns 722
No_of_seqs 321 out of 1101
Neff 5.3
Searched_HMMs 46136
Date Thu Mar 28 15:40:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004955.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004955hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02457 phenylalanine ammonia 100.0 7E-211 1E-215 1777.7 72.3 699 19-720 4-706 (706)
2 KOG0222 Phenylalanine and hist 100.0 2E-205 4E-210 1629.9 57.8 680 29-720 35-715 (715)
3 TIGR01226 phe_am_lyase phenyla 100.0 4E-198 9E-203 1670.1 68.4 677 29-710 1-680 (680)
4 COG2986 HutH Histidine ammonia 100.0 1E-145 3E-150 1182.6 49.2 488 58-577 2-491 (498)
5 TIGR01225 hutH histidine ammon 100.0 1E-142 3E-147 1193.3 51.0 487 60-577 1-489 (506)
6 TIGR03832 Tyr_2_3_mutase tyros 100.0 4E-141 8E-146 1183.5 51.6 491 62-575 1-505 (507)
7 PRK09367 histidine ammonia-lya 100.0 5E-140 1E-144 1173.6 51.4 488 58-577 2-491 (500)
8 PF00221 Lyase_aromatic: Aroma 100.0 3E-136 6E-141 1139.9 43.5 470 60-555 1-472 (473)
9 cd00332 PAL-HAL Phenylalanine 100.0 6E-135 1E-139 1120.0 47.5 442 65-530 1-444 (444)
10 cd01594 Lyase_I_like Lyase cla 99.8 4.6E-19 9.9E-24 180.0 10.9 225 160-515 1-230 (231)
11 PLN02972 Histidyl-tRNA synthet 94.9 0.075 1.6E-06 64.0 8.5 186 281-529 39-229 (763)
12 COG5613 Uncharacterized conser 36.2 62 0.0013 36.3 5.4 55 109-166 10-68 (400)
13 COG0061 nadF NAD kinase [Coenz 28.1 44 0.00094 36.1 2.6 33 106-141 77-110 (281)
14 PF08580 KAR9: Yeast cortical 27.6 2.4E+02 0.0052 34.6 8.9 27 620-646 219-245 (683)
15 TIGR01226 phe_am_lyase phenyla 27.1 1E+03 0.022 29.4 13.8 56 594-649 561-616 (680)
No 1
>PLN02457 phenylalanine ammonia-lyase
Probab=100.00 E-value=6.9e-211 Score=1777.66 Aligned_cols=699 Identities=84% Similarity=1.285 Sum_probs=676.7
Q ss_pred cccCccccC-CCCCCHHHHHHHhccCcHHHHHHHHhhccCCeEEEcCCCcCHHHHHHHHhhC-CCCeEEeCHHHHHHHHH
Q 004955 19 TSSLGLCTG-TDPLNWTVAADSLKGSHLDEVKRMIDEYRRPVVKLGGESLTIGQVTAIAAHD-SGVKVELAEAARAGVKA 96 (722)
Q Consensus 19 ~~~~~~~~~-~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~l~g~~Lti~~v~avA~~~-~~~~V~l~~~a~~ri~~ 96 (722)
.+.+++|+. .|||||++||++|+|||+||||+|+++|++..|+|||.+||++||++||++. .+++|++++++++||++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~G~~Lti~~V~aVA~~~~~~~~V~ls~~a~~ri~~ 83 (706)
T PLN02457 4 ASSEGFCIGGADPLNWGKAAEALKGSHLDEVKRMVAEYRKPVVKLEGETLTIAQVAAVARRGAGGVRVELSESARARVKA 83 (706)
T ss_pred ccccccccCCCCCCcHHHHHHHhcCCcHHHHHHHHHHhcCceEEECCCCCCHHHHHHHHhcCCCCCeeeeCHHHHHHHHH
Confidence 344678985 6999999999999999999999999999999999999999999999999732 15899999999999999
Q ss_pred HHHHHHHHHhcCCceeccccCCCCCCCccccchhhhHHHHHHHhhccccCCCCCCCCCCChHHHHHHHHHHHHHhcCCCC
Q 004955 97 SSDWVMDSMMKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYS 176 (722)
Q Consensus 97 s~~~l~~~~~~g~~iYGVnTGfG~~a~~~~~~~~~LQ~~Lir~~~aGv~~~g~~~g~~lp~~~vRA~MlvRlNsL~~G~S 176 (722)
|+++|++.+++|++|||||||||+++|+++++..+||+||||+|+||+++.+. .|++||+++|||+|++|+|+|++|||
T Consensus 84 S~~~l~~~~~~g~~iYGVtTGfG~~~d~ri~~~~~LQ~nLirshaaGvg~~~~-~g~~lp~~~VRAaMliRlNsL~~G~S 162 (706)
T PLN02457 84 SSDWVMESMMKGTDSYGVTTGFGATSHRRTKQGGALQRELIRFLNAGIFGTGE-SGHTLPASATRAAMLVRINTLLQGYS 162 (706)
T ss_pred HHHHHHHHHhcCCeeeeecCCCCCccCCchhHHHHHHHHHHHHHhcCcCCCCC-CCCCCCHHHHHHHHHHHHHHhccCCC
Confidence 99999999999999999999999999999999999999999999999986553 47999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhCCCccccCCCCCCCCcCCchHHHHHHHHhccCCCccccCCCCeeeCHHHHHHHCCCCCCC--ccc
Q 004955 177 GIRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGQVLNPTEAFNLAGVTSGF--FEL 254 (722)
Q Consensus 177 GVr~evle~L~~lLN~~i~P~VP~rGSVGASGDL~PLS~Ia~~L~G~g~~~~~~~~G~~~~a~eAL~~aGl~~~P--~~L 254 (722)
|||||++|+|.+|||+||+|+||++|||||||||+||||||++|+|+|+++++.++|+++++.|||+++||+ | ++|
T Consensus 163 GVr~evle~L~~lLN~~i~PvVP~~GSVGASGDL~PLAhIAl~L~Geg~~~~v~~~G~~~~a~eAL~~aGl~--Pp~~~L 240 (706)
T PLN02457 163 GIRFEILEAITKLLNANVTPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVTPDGEKVTAAEAFKLAGIE--GGFFEL 240 (706)
T ss_pred CCCHHHHHHHHHHHhCcCcccCCCCCCcCccchHHHHHHHHHHHcCCCCceeeccCCEEEcHHHHHHHcCCC--CCCcCC
Confidence 999999999999999999999999999999999999999999999999988778899999999999999999 7 999
Q ss_pred CCccchhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccchhhhhcCCCchHHHHHHHHHHHhcCChh
Q 004955 255 QPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSY 334 (722)
Q Consensus 255 ~pKEGLALiNGTa~s~a~aalal~~a~~L~~~a~v~~Als~Eal~G~~~~fd~~ih~~RphpGQ~e~A~~ir~lL~gS~~ 334 (722)
+|||||||||||++|+|+|+++++||++|+.++++++||++|||+|++++|||++|++||||||+++|++||++|+||++
T Consensus 241 ~~KEGLALiNGTa~~~a~aalal~da~~L~~~a~v~~Als~Eal~G~~~~fdp~ih~~RpHpGQ~e~Aa~ir~lL~GS~l 320 (706)
T PLN02457 241 QPKEGLALVNGTAVGSALASTVLFDANVLAVLAEVLSAVFCEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSY 320 (706)
T ss_pred CCCcchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcchhcCHHHHhcCCChhHHHHHHHHHHHhCcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcccCCCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHhccCCCCccccCCCccccCCCCCCchhHhHHH
Q 004955 335 VKAAQKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRAATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMD 414 (722)
Q Consensus 335 ~~~~~~~~~~d~~~~~~QD~YSlR~~PQvlG~~~d~l~~a~~~ie~ElNS~~DNPlI~~~~~~vl~GGNF~g~~va~AmD 414 (722)
++...+.|+.+|.++++||||||||+||||||++|+|++++++||+||||+|||||||+++++++|||||||+||+++||
T Consensus 321 ~~~~~~~~~~~~~~~~vQD~YSLRc~PQvlGp~~d~l~~a~~~ie~ElNS~tDNPLId~~~~~vl~GGNF~g~~va~amD 400 (706)
T PLN02457 321 MKAAKKLHETDPLQKPKQDRYALRTSPQWLGPQIEVIRAATKSIEREINSVNDNPLIDVARDKALHGGNFQGTPIGVSMD 400 (706)
T ss_pred chhhhhccccccccCcCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHhccCCCCceeCCCCceeeCCCCCchHHHHHHH
Confidence 87766666667667899999999999999999999999999999999999999999999888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHhhccCCCcccccccccccccc
Q 004955 415 NTRLAIASIGKLLFAQFSELVNDFYNNGLPSNLTGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDV 494 (722)
Q Consensus 415 ~l~lAla~lg~l~~~r~~~Lvn~~~n~GLP~~L~~~~~p~l~~Gf~~~qi~~aal~sEl~~LA~PvS~~~~sae~~nqDv 494 (722)
++++||++||+++|||+++|+||.+|+|||+||+++++||++||||++||+||||+|||++||||+|+|++|+++|||||
T Consensus 401 ~l~lAla~lg~ls~rr~~~Lvnp~~n~GLP~fL~~~~~pgl~~Gf~~~q~taAAl~sEl~~LA~PvS~~~~pt~~~nED~ 480 (706)
T PLN02457 401 NTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQYLANPVTNHVQSAEQHNQDV 480 (706)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccccCCCCHhhcCCCCCCcccccHHHHHHHHHHHHHHHHhcCCCccCcccccCCcccc
Confidence 99999999999999999999999999999999997679999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhcccCCCCCCCcCCHHHHHHHH
Q 004955 495 NSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKNTVKNTVSQVAKRVLTMGVNGELHPSRFCEKDLIKVV 574 (722)
Q Consensus 495 ~Sma~~saRk~~~~ve~l~~~~A~ell~a~QAidLR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dR~~~~~l~~~~ 574 (722)
||||++||||+.+++|++++|+||||+++|||+|||+++++|++.++++++++|+++++++.++++++.||+++|+.+++
T Consensus 481 ~Smg~~sArkt~e~ve~l~~~lAieLl~a~QAlDLR~~~~~l~~~~~~~~~~vr~~v~~~~~~~~~~~~~~~~~~l~~~~ 560 (706)
T PLN02457 481 NSLGLISARKTAEAVDILKLMSSTYLVALCQAIDLRHLEENLKSAVKNTVSQVAKKTLTTGANGELHPSRFCEKDLLKVV 560 (706)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHccccCCCccccccccCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhccCCCCCchHHHHHHHHHHHHhhhhcCCCCCCCcchhhccHHHHHHHHHhHhHHHHHHHHHHHhcCChhhhh
Q 004955 575 DREYVFAYIDDPCSASYPLMQKLRQVLVDHALDNGDREKNSTTSIFQKIGAFEDELKTLLPKEVEIARTELESGNAAIAN 654 (722)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~I~~f~~el~~~l~~~~~~~R~~f~~g~~~~~n 654 (722)
+++++|+|+||||+.+|++|++++++|++|++++++++++..+++|++|..|++++++.|+++|+++|++|++|+.+++|
T Consensus 561 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~~~l~~~~~~~r~~~~~~~~~~~~ 640 (706)
T PLN02457 561 DREPVFSYIDDPCSATYPLMQKLRQVLVEHALANGEAEKNASTSVFRKIGAFEEELKAALPKEVEAAREAYENGTAPIPN 640 (706)
T ss_pred hhcceecccCCCcccchhHHHHHHHHHHHHHhhCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 99999999999999999999999999999999988888888889999999999999999999999999999999988999
Q ss_pred hhhccccchhhHHHHhhhCcccccCccccCCCchHHHHHHHHhcCcchhhHHHhhhhccCCCCCCC
Q 004955 655 RIKECRSYPLYKIVREEIGTSLLTGEKVRSPGEEFDKVFAAMCEGKLIDPMLECLKEWNGAPLPIC 720 (722)
Q Consensus 655 ~il~~rS~pLY~FVR~eLgVpfh~Ge~~~t~G~~~~~i~~ai~~g~~~~~LlecL~~w~g~p~~~~ 720 (722)
+|++|||||||+|||+|||||||+|++++|||+||+|||+|||+|+++||||+||++|+|+|+|||
T Consensus 641 ri~~~~s~~lY~fVR~~L~~~~~~g~~~~~~g~~~~~v~~ai~~g~~~~~l~~~~~~~~~~~~~~~ 706 (706)
T PLN02457 641 RIKECRSYPLYRFVREELGTELLTGEKTRSPGEEFDKVFDAICQGKLIDPLLECLKEWNGAPLPIC 706 (706)
T ss_pred hhhcCcchHHHHHHHHHcCCccccCCCCCCCCccHHHHHHHHHCCccHHHHHHHHHhcCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999998
No 2
>KOG0222 consensus Phenylalanine and histidine ammonia-lyase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2e-205 Score=1629.94 Aligned_cols=680 Identities=80% Similarity=1.194 Sum_probs=668.6
Q ss_pred CCCCHHHHHHHhccCcHHHHHHHHhhccCCeEEEcCCCcCHHHHHHHHhhCCCCeEEeCHHHHHHHHHHHHHHHHHHhcC
Q 004955 29 DPLNWTVAADSLKGSHLDEVKRMIDEYRRPVVKLGGESLTIGQVTAIAAHDSGVKVELAEAARAGVKASSDWVMDSMMKG 108 (722)
Q Consensus 29 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~l~g~~Lti~~v~avA~~~~~~~V~l~~~a~~ri~~s~~~l~~~~~~g 108 (722)
||+||..+|++|+++|+||||+|+++||++.|.|||.+||++||+++++ ++.+|+|+++++.+|++|++||++.+++|
T Consensus 35 Dp~n~~~~a~amk~s~ldEvkkm~~~yRkk~v~L~GetLt~~qva~~~k--g~~~veLs~ea~~~V~as~~~v~e~mne~ 112 (715)
T KOG0222|consen 35 DPLNWNAAALAMKGSHLDEVKKMVKEYRKKVVNLGGETLTIGQVAAVAK--GGVKVELSEEARAGVKASSDWVMESMNEG 112 (715)
T ss_pred ChhhhHHHHHHhchhhhHHHHHHHHHHhhhheeeCCccccHHHHHHhcc--CceeEEeCHHHHhhhhhhHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999997 68999999999999999999999999999
Q ss_pred CceeccccCCCCCCCccccchhhhHHHHHHHhhccccCCCCCCCCCCChHHHHHHHHHHHHHhcCCCCcccHHHHHHHHH
Q 004955 109 TDSYGVTTGFGATSHRRTKQGGALQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILETITK 188 (722)
Q Consensus 109 ~~iYGVnTGfG~~a~~~~~~~~~LQ~~Lir~~~aGv~~~g~~~g~~lp~~~vRA~MlvRlNsL~~G~SGVr~evle~L~~ 188 (722)
+++||||||||+..++++.+.+.||+.+||++++|++|.|.+.++.+|.+.+|++|++|+|+|++||||||+|+++++..
T Consensus 113 t~vYGvTTGFG~t~~r~t~~~~aLqk~~i~ll~a~~~g~g~~~s~~~P~~rtR~~m~lRIN~L~qGySGI~~E~leai~~ 192 (715)
T KOG0222|consen 113 TDVYGVTTGFGATSHRRTIPGEALQKELIRLLNAGIFGYGKDTSPTLPNPRTRAAMLLRINTLLQGYSGIRFEILEAITS 192 (715)
T ss_pred CceeeeeccccccccccccCHHHHHHHHHHHHHhcCcccCCCCCCCCCcHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 99999999999999999999999999999999999998876677999999999999999999999999999999999999
Q ss_pred HHhCCCccccCCCCCCCCcCCchHHHHHHHHhccCCCccccCCCCeeeCHHHHHHHCCCCCCC-cccCCccchhhcccch
Q 004955 189 FLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGQVLNPTEAFNLAGVTSGF-FELQPKEGLALVNGTA 267 (722)
Q Consensus 189 lLN~~i~P~VP~rGSVGASGDL~PLS~Ia~~L~G~g~~~~~~~~G~~~~a~eAL~~aGl~~~P-~~L~pKEGLALiNGTa 267 (722)
|||+.|+|.||+||+|||||||+||||||+.|+|+|+.+.|.+.|++.+|.+||+.+|++ | |+|+|||||||||||+
T Consensus 193 ~~N~~~~p~lP~rGTi~aSGDL~PLs~iA~~L~G~pn~K~~~P~~~~~~A~~a~k~~gls--~f~eL~PKEGLALvNGTa 270 (715)
T KOG0222|consen 193 LLNANITPYLPLRGTITASGDLVPLSYIAGGLTGRPNSKMWGPSGEWLTAKEAFKLAGLS--PFFELQPKEGLALVNGTA 270 (715)
T ss_pred HHhcCcccccCcCcccccCCCcccHHHHhhhhcCCCCCcccCCCCCcccHHHHHHHcCCC--cceecccccceeeeccch
Confidence 999999999999999999999999999999999999999999999999999999999999 7 9999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccchhhhhcCCCchHHHHHHHHHHHhcCChhhhhhhhhcccCCC
Q 004955 268 VGSGLAATVLFEANILAIMSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAQKLHEIDPL 347 (722)
Q Consensus 268 ~s~a~aalal~~a~~L~~~a~v~~Als~Eal~G~~~~fd~~ih~~RphpGQ~e~A~~ir~lL~gS~~~~~~~~~~~~d~~ 347 (722)
+.+|+||.++++|+.|+++|++++||+.|+|.|++++|||.+|++||||||||+|++||++|+||++++...+.|+.||+
T Consensus 271 v~s~L~s~vl~~An~ia~~aev~sAl~~eVmkGk~e~~D~~~Hrlk~H~GQieaA~~m~~iLd~ss~~ke~ae~Hr~dpl 350 (715)
T KOG0222|consen 271 VGSGLASTVLERANIIAVQAEVLSALFAEVMKGKPEFTDHLTHRLKHHPGQIEAAARMEHILDGSSYPKEAAESHRMDPL 350 (715)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchhhccCCCcHHHHHHHHHHHhcccccHHHHHHHhccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccccccccchhhHHHHHHHHHHHHHHHHhccCCCCccccCCCccccCCCCCCchhHhHHHHHHHHHHHHHHHH
Q 004955 348 QKPKQDRYALRTSPQWLGPQIEVIRAATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLL 427 (722)
Q Consensus 348 ~~~~QD~YSlR~~PQvlG~~~d~l~~a~~~ie~ElNS~~DNPlI~~~~~~vl~GGNF~g~~va~AmD~l~lAla~lg~l~ 427 (722)
++++||+|.|||+||||||++|+|+++++.|++||||+|||||||+++++++|||||||+|++.|||++|||+++||+||
T Consensus 351 ~k~~QD~YaLR~~PQ~~G~~~evI~fatkiIe~EiNSvnDNPli~vsR~kai~GGNFqGt~~~~AmD~~~laiaei~kl~ 430 (715)
T KOG0222|consen 351 QKPKQDRYALRTSPQWLGPQIEVIRFATKIIEREINSVNDNPLIDVSRNKAIHGGNFQGTPIGVAMDNLRLAIAEIGKLM 430 (715)
T ss_pred ccchhhhhhhhcCchhhchHHHHHHHHHHHHHHHhhccCCCcceecccccccccCccCCCcchhhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHhhccCCCcccccccccccccccchhHHHHHHHHH
Q 004955 428 FAQFSELVNDFYNNGLPSNLTGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAE 507 (722)
Q Consensus 428 ~~r~~~Lvn~~~n~GLP~~L~~~~~p~l~~Gf~~~qi~~aal~sEl~~LA~PvS~~~~sae~~nqDv~Sma~~saRk~~~ 507 (722)
|||++||+|++||||||+||+++++||+|||||++|++||||||||++||||+|+|++|+++|||||||||++|+||+.+
T Consensus 431 ~~q~e~LvN~~~nngLPs~Lt~~rn~~Ld~Gf~~ae~a~As~~SE~q~L~~P~t~~~~sas~~nqD~~SlG~~ssRKt~~ 510 (715)
T KOG0222|consen 431 FAQFEELVNDFYNNGLPSNLTAGRNPSLDYGFKGAEIAMASYCSELQFLANPVTVHVQSASQHNQDVNSLGLISSRKTLE 510 (715)
T ss_pred HHHHHHHhhhhhhcCCCccccCCCCCCcccchhHHHHHHHHHHhhhhhhcCCccccccchhhhcccchhhcchhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhcccCCCCCCCcCCHHHHHHHHhhhhhhhhccCCC
Q 004955 508 AVDILKLMSSTFLVALCQAIDLRHLEENLKNTVKNTVSQVAKRVLTMGVNGELHPSRFCEKDLIKVVDREYVFAYIDDPC 587 (722)
Q Consensus 508 ~ve~l~~~~A~ell~a~QAidLR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dR~~~~~l~~~~~~~~~~~~~~~~~ 587 (722)
+||++++|+++||+++|||+|||++++..+.++...+.++.++|++ ++++||||++||.++++|+++|+|.||||
T Consensus 511 aVe~lk~m~t~~LvA~CQ~id~rhLe~ll~ta~~~kV~qlaksVl~-----~l~~dRf~~~di~avv~re~v~~~ed~~~ 585 (715)
T KOG0222|consen 511 AVEILKLMSTTELVAACQAIDLRHLEELLKTAVLEKVSQLAKSVLT-----PLHPDRFMEPDILAVVDREYVFSYEDDPW 585 (715)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHhhhhHHHhhhhHHHHHHHHHHhcc-----ccCcccccchhHHHHhhhhheeeecCChH
Confidence 9999999999999999999999999999999999999999999986 48899999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHhhhhcCCCCCCCcchhhccHHHHHHHHHhHhHHHHHHHHHHHhcCChhhhhhhhccccchhhHH
Q 004955 588 SASYPLMQKLRQVLVDHALDNGDREKNSTTSIFQKIGAFEDELKTLLPKEVEIARTELESGNAAIANRIKECRSYPLYKI 667 (722)
Q Consensus 588 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~I~~f~~el~~~l~~~~~~~R~~f~~g~~~~~n~il~~rS~pLY~F 667 (722)
+.+||+|||+|.++++|++..++.+++ ++|.||..|+.+++..+|++++..|.+|++|..+++|||++|||||||+|
T Consensus 586 s~t~P~~qklr~~~~~~a~a~~e~e~~---~~f~ki~af~~e~k~~lPke~e~~r~ey~~gt~~~~nrik~crsyplyrf 662 (715)
T KOG0222|consen 586 SATYPLMQKLRHVLVDHALALPETEKN---SVFHKIGAFEAELKALLPKEVERVRAEYENGTSAIANRIKECRSYPLYRF 662 (715)
T ss_pred HHhhHHHHHHHHHhccccccCCccccc---hhhhccchhHHHHhhcCchhHHHHHHHhccCcchhhhHHHHhhcCcHHHH
Confidence 999999999999999999887765543 78999999999999999999999999999999999999999999999999
Q ss_pred HHhhhCcccccCccccCCCchHHHHHHHHhcCcchhhHHHhhhhccCCCCCCC
Q 004955 668 VREEIGTSLLTGEKVRSPGEEFDKVFAAMCEGKLIDPMLECLKEWNGAPLPIC 720 (722)
Q Consensus 668 VR~eLgVpfh~Ge~~~t~G~~~~~i~~ai~~g~~~~~LlecL~~w~g~p~~~~ 720 (722)
||+|||+.+++||+.+|||++++|||.||++||++||+||||++|||+|+|||
T Consensus 663 vr~el~t~lltge~v~spge~fdkvf~ai~~gk~idp~~ecl~ewngap~~ic 715 (715)
T KOG0222|consen 663 VREELGTELLTGEKVRSPGEEFDKVFTAISEGKLIDPLMECLKEWNGAPISIC 715 (715)
T ss_pred HHHHhcceeccCCccCCchHHHHHHHHHHhcCccccHHHHHHHHcCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999
No 3
>TIGR01226 phe_am_lyase phenylalanine ammonia-lyase. Members of this family are found, so far, in plants and fungi. From phenylalanine, this enzyme yields cinnaminic acid, a precursor of many important plant compounds. This protein shows extensive homology to histidine ammonia-lyase, the first enzyme of a histidine degradation pathway.
Probab=100.00 E-value=4.3e-198 Score=1670.08 Aligned_cols=677 Identities=78% Similarity=1.186 Sum_probs=654.3
Q ss_pred CCCCHHHHHHHhccCcHHHHHHHHhhcc-CCeEEEcCCCcCHHHHHHHHhhCCCCeEEeCHHHH-HHHHHHHHHHHHHHh
Q 004955 29 DPLNWTVAADSLKGSHLDEVKRMIDEYR-RPVVKLGGESLTIGQVTAIAAHDSGVKVELAEAAR-AGVKASSDWVMDSMM 106 (722)
Q Consensus 29 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~-~~~v~l~g~~Lti~~v~avA~~~~~~~V~l~~~a~-~ri~~s~~~l~~~~~ 106 (722)
||+||++||++|++||+|+|++|+++|+ .+.|+|||.+||++||++||+ .+++|+|+++++ +||++|++||++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~G~~Lti~~v~aVA~--~~~~V~Ls~~a~~~rv~~S~~~l~~~i~ 78 (680)
T TIGR01226 1 DPLNWGTAAKTMAGSQLDEVKRMVAEYRNGPLIKLDGATLTISQVAAAAR--RGVAVELDESARVERVKASSEWVMTQMS 78 (680)
T ss_pred CCccHHHHHHHhccChHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHh--CCCCeeECHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999998 578999999999999999997 478999999999 999999999999999
Q ss_pred cCCceeccccCCCCCCCccccchhhhHHHHHHHhhccccCCCCCCCCCCChHHHHHHHHHHHHHhcCCCCcccHHHHHHH
Q 004955 107 KGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILETI 186 (722)
Q Consensus 107 ~g~~iYGVnTGfG~~a~~~~~~~~~LQ~~Lir~~~aGv~~~g~~~g~~lp~~~vRA~MlvRlNsL~~G~SGVr~evle~L 186 (722)
+|++|||||||||+++|+++++..+||+||||+|+||+++.+...+++||+++|||+|++|+|+|++|||||||+++|+|
T Consensus 79 ~g~~IYGVnTGfG~~~d~r~~~~~~lQ~~Lir~h~aGvg~~~~~~~~~lp~~~vRAaMlvRlNsL~~G~SGVr~evle~l 158 (680)
T TIGR01226 79 KGTDVYGVTTGFGGTSHRRTKQGGALQKELLRFLNAGILGTGSDNHNSLPEEATRAAMLVRINTLLQGYSGIRFEILEAI 158 (680)
T ss_pred cCCeeeeecCCCCCccCccchHHHHHHHHHHHHHhcCCCCCCCcCCCcCCHHHHHHHHHHHHHHhccCCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999865443335999999999999999999999999999999999
Q ss_pred HHHHhCCCccccCCCCCCCCcCCchHHHHHHHHhccCCCccccCCCCeeeCHHHHHHHCCCCCCC-cccCCccchhhccc
Q 004955 187 TKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGQVLNPTEAFNLAGVTSGF-FELQPKEGLALVNG 265 (722)
Q Consensus 187 ~~lLN~~i~P~VP~rGSVGASGDL~PLS~Ia~~L~G~g~~~~~~~~G~~~~a~eAL~~aGl~~~P-~~L~pKEGLALiNG 265 (722)
.+|||+||+|+||++|||||||||+||||||++|+|+|+++++.++|+++++.|||+++||+ | ++|+||||||||||
T Consensus 159 ~~lLN~~i~P~VP~rGSIGASGDL~PLShIa~aL~Geg~v~~~~~~G~~~~a~eAL~~aGl~--p~~~L~pKEGLALvNG 236 (680)
T TIGR01226 159 TKLLNANVTPCLPLRGTITASGDLVPLSYIAGLITGRPNSKVYSPDGQIMSAAEALKLAGIE--GGFELQPKEGLAIVNG 236 (680)
T ss_pred HHHHhCcCcccCCCCCCcCccchHHHHHHHHHHHcCCCCceeecCCCeEEeHHHHHHHcCCC--CCCCCCCccchhhhcc
Confidence 99999999999999999999999999999999999999987776689999999999999999 8 99999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccchhhhhcCCCchHHHHHHHHHHHhcCChhhhhhhhhcccC
Q 004955 266 TAVGSGLAATVLFEANILAIMSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAQKLHEID 345 (722)
Q Consensus 266 Ta~s~a~aalal~~a~~L~~~a~v~~Als~Eal~G~~~~fd~~ih~~RphpGQ~e~A~~ir~lL~gS~~~~~~~~~~~~d 345 (722)
|++|+|+|+++++||++|+.++++++||++|+|+|++++|++.+|++||||||+++|++||++|+||++++...+.++.+
T Consensus 237 Ta~~~a~aalal~~a~~L~~~a~v~~Al~~Eal~G~~~~~~~~~~~~RpHpGQ~e~Aa~ir~lL~GS~l~~~~~~~~~~~ 316 (680)
T TIGR01226 237 TAVGASMASLVLFEANILALLAEVLSAMFCEVMNGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYAKHAEKEVEMD 316 (680)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCcCChHHHHHcCCCCcHHHHHHHHHHHhCCChhhhhhhhccccC
Confidence 99999999999999999999999999999999999999666678899999999999999999999999998876667767
Q ss_pred CCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHhccCCCCccccCCCccccCCCCCCchhHhHHHHHHHHHHHHHH
Q 004955 346 PLQKPKQDRYALRTSPQWLGPQIEVIRAATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGK 425 (722)
Q Consensus 346 ~~~~~~QD~YSlR~~PQvlG~~~d~l~~a~~~ie~ElNS~~DNPlI~~~~~~vl~GGNF~g~~va~AmD~l~lAla~lg~ 425 (722)
+.++++||||||||+||||||++|+|++++++|++||||+|||||||+++++++|||||||+||++|||++++||++||+
T Consensus 317 ~~~~~vQD~YSlRc~PQvlGp~~e~l~~a~~~ie~ElNS~tDNPLI~~~~~~vlhgGNF~g~~ia~amD~l~lAla~lg~ 396 (680)
T TIGR01226 317 PLQKPKQDRYALRTSPQWLGPQIEVIRSATKMIEREINSVNDNPLIDVERGKAHHGGNFQGTPIGVSMDNTRLAIAAIGK 396 (680)
T ss_pred ccCCcCCCcccchhhhhhhHHHHHHHHHHHHHHHHHHccCCCCCceeCCCCceeeCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 76789999999999999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHhhccCCCcccccccccccccccchhHHHHHHH
Q 004955 426 LLFAQFSELVNDFYNNGLPSNLTGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKT 505 (722)
Q Consensus 426 l~~~r~~~Lvn~~~n~GLP~~L~~~~~p~l~~Gf~~~qi~~aal~sEl~~LA~PvS~~~~sae~~nqDv~Sma~~saRk~ 505 (722)
++|+|+++|+||.+|+|||+||+++++||++||||++||+||||++||++||||+|+|++|+++|||||||||++||||+
T Consensus 397 ls~~r~~~Lvnp~~n~GLP~fL~~~~~pgl~~Gf~g~q~~~aal~sEl~~LA~PvS~~~~~a~~~nEDv~Smg~~sArk~ 476 (680)
T TIGR01226 397 LMFAQFSELVNDFYNNGLPSNLAGGRNPSLDYGFKGAEIAMASYTSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKT 476 (680)
T ss_pred HHHHHHHHhcCccccCCCCHhhCCCCCCCcccccHHHHHHHHHHHHHHHHhcCCCccCccccccCcccccccHHHHHHHH
Confidence 99999999999999999999999767999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhcccCCCCCCCcCCHHHHHHHHhhhhhhhhccC
Q 004955 506 AEAVDILKLMSSTFLVALCQAIDLRHLEENLKNTVKNTVSQVAKRVLTMGVNGELHPSRFCEKDLIKVVDREYVFAYIDD 585 (722)
Q Consensus 506 ~~~ve~l~~~~A~ell~a~QAidLR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dR~~~~~l~~~~~~~~~~~~~~~ 585 (722)
.+++|++++|+|+||+++|||+|||+++++|.+.+++.+.++.++++..+.++++++.||+++++.++++++++|+|.||
T Consensus 477 ~~~ve~l~~m~A~eLl~a~QAlDLR~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 556 (680)
T TIGR01226 477 AEAVDILKLMLATYLYALCQAVDLRHLEENFKSTVKNIVSEVAKKVLGMGLTGELHPKRFCEKDLLKVLDRETVFDYIDD 556 (680)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhhhhHHHHHHHHHHHhcccCCCChhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHHhhhhcCCCCCCCcchhhccHHHHHHHHHhHhHHHHHHHHHHHhcCChhhhhhhhccccchhh
Q 004955 586 PCSASYPLMQKLRQVLVDHALDNGDREKNSTTSIFQKIGAFEDELKTLLPKEVEIARTELESGNAAIANRIKECRSYPLY 665 (722)
Q Consensus 586 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~I~~f~~el~~~l~~~~~~~R~~f~~g~~~~~n~il~~rS~pLY 665 (722)
||+.+|++|++|+++|++|+|++++.+++ ..++|++|+.|+++++..+++++++.|.+|.+|..++||||.+|||||||
T Consensus 557 ~~~~~~~~~~~l~~~l~~~~l~~~~~~~~-~~s~~~~~~~~~~~~~~~l~~e~~~~~~~~~~g~~~~~~~i~~c~s~~lY 635 (680)
T TIGR01226 557 PCSANYPLMQKLRQVLVEHALSNGEREKD-LLSSFQKIQVFEAELKAVLPPDVRGARAAGDSGTSPAPNRIGECRSYPLY 635 (680)
T ss_pred cchhhHHHHHHHHHHHHHHhhcCCccccc-hhHHHHHHHHHHHHHHHhCHHHHHHHHHhccCCCchhhHHHhccCCcHHH
Confidence 99999999999999999999998877665 67899999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCcccccCccccCCCchHHHHHHHHhcCcchhhHHHhhh
Q 004955 666 KIVREEIGTSLLTGEKVRSPGEEFDKVFAAMCEGKLIDPMLECLK 710 (722)
Q Consensus 666 ~FVR~eLgVpfh~Ge~~~t~G~~~~~i~~ai~~g~~~~~LlecL~ 710 (722)
+|||+|||||||+|++++|||+||+|||+|||+|+++||||+||+
T Consensus 636 ~fVR~~l~~~~~~g~~~~~~g~~~~~v~~ai~~g~~~~~l~~~~~ 680 (680)
T TIGR01226 636 RFVREELGTKYLTGEKYNSPGEEISKVYEAISEGKIIDPLLKCLD 680 (680)
T ss_pred HHHHHHcCCccccCCcCCCCCccHHHHHHHHHCCcchHHHHHhcC
Confidence 999999999999999999999999999999999999999999985
No 4
>COG2986 HutH Histidine ammonia-lyase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-145 Score=1182.61 Aligned_cols=488 Identities=33% Similarity=0.494 Sum_probs=472.0
Q ss_pred CeEEEcCCCcCHHHHHHHHhhCCCCeEEeCHHHHHHHHHHHHHHHHHHhcCCceeccccCCCCCCCccc--cchhhhHHH
Q 004955 58 PVVKLGGESLTIGQVTAIAAHDSGVKVELAEAARAGVKASSDWVMDSMMKGTDSYGVTTGFGATSHRRT--KQGGALQKE 135 (722)
Q Consensus 58 ~~v~l~g~~Lti~~v~avA~~~~~~~V~l~~~a~~ri~~s~~~l~~~~~~g~~iYGVnTGfG~~a~~~~--~~~~~LQ~~ 135 (722)
..|+|||.+||++||++|+| .+++|+||+++++||++||+.|++.+++|++|||||||||+++++++ ++.++||+|
T Consensus 2 ~~i~l~~~~lt~~dv~~Var--~g~~v~l~~~a~~rI~~sra~v~~iv~~g~~vYGInTGfG~l~~v~I~~~d~~~Lqrn 79 (498)
T COG2986 2 MTIILDPGSLTLEDLAAIAR--EGAPVRLDPAAWARIEKARARVAEIVAGGAPVYGINTGFGKLADVRIAAADLATLQRN 79 (498)
T ss_pred ceEEeCCCCCCHHHHHHHHh--cCCceeeCHHHHHHHHHHHHHHHHHHhCCCeeeeeccccccccccccCHHHHHHHHHh
Confidence 36899999999999999998 58999999999999999999999999999999999999999999987 478999999
Q ss_pred HHHHhhccccCCCCCCCCCCChHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHhCCCccccCCCCCCCCcCCchHHHH
Q 004955 136 LIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSY 215 (722)
Q Consensus 136 Lir~~~aGv~~~g~~~g~~lp~~~vRA~MlvRlNsL~~G~SGVr~evle~L~~lLN~~i~P~VP~rGSVGASGDL~PLS~ 215 (722)
||++|+|||| ++||+++||++|++|+|+|++||||||+++++.|++|||+||+|+||++|||||||||+||||
T Consensus 80 li~SHa~GvG-------~~l~~~~vRaim~~r~nsLa~G~SGvr~~vi~~LlalLN~gv~P~iP~~GSVGASGDLapLaH 152 (498)
T COG2986 80 LILSHACGVG-------EPLPEEIVRAIMALRLNSLARGYSGVRLEVIELLLALLNKGVIPVIPSKGSVGASGDLAPLAH 152 (498)
T ss_pred hHHHhhccCC-------CCCcHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhCCCeecCCCCCCCcccccccHHHH
Confidence 9999999995 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCccccCCCCeeeCHHHHHHHCCCCCCCcccCCccchhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004955 216 IAGLLTGRPNSKAVGPNGQVLNPTEAFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFA 295 (722)
Q Consensus 216 Ia~~L~G~g~~~~~~~~G~~~~a~eAL~~aGl~~~P~~L~pKEGLALiNGTa~s~a~aalal~~a~~L~~~a~v~~Als~ 295 (722)
|+++|+|||+++ |+|+++|++|||+++||+ |++|++||||||||||++|||+|+++++||++|+.++++++||++
T Consensus 153 mal~liGeG~a~---~~G~~~~a~~AL~~agle--Pi~L~aKEGLALiNGTq~~tg~a~lal~~Ae~L~~~A~~~~ALs~ 227 (498)
T COG2986 153 MALALIGEGEAF---YQGERLSAAEALAKAGLE--PVTLAAKEGLALINGTQVSTALALLALFRAERLLRTALIAGALST 227 (498)
T ss_pred HHHHHhcCceee---eCCEeccHHHHHHHcCCC--CcccccccceeeccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999876 999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHhcCCccccchhhhhcCCCchHHHHHHHHHHHhcCChhhhhhhhhcccCCCCCCCCCcccccccccchhhHHHHHHHHH
Q 004955 296 EVMNGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAQKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRAAT 375 (722)
Q Consensus 296 Eal~G~~~~fd~~ih~~RphpGQ~e~A~~ir~lL~gS~~~~~~~~~~~~d~~~~~~QD~YSlR~~PQvlG~~~d~l~~a~ 375 (722)
|+++|+..+|||.||.+||||||+++|++||++|.||.+++... ..++||||||||+|||||+++|+|++++
T Consensus 228 Eal~g~~~~fd~~i~~~Rp~~Gq~~~a~~lR~lLagS~~~~~~~--------~~rvQDpySlRc~PQV~GA~~d~l~~~~ 299 (498)
T COG2986 228 EALMGSDAPFDERIHALRPHPGQIDVAAALRALLAGSAIRRSHL--------EQRVQDPYSLRCQPQVHGACLDALRQAA 299 (498)
T ss_pred HHhcCCccccchHHHHhCCCccHHHHHHHHHHHhccCcchhccc--------cccccCcchhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987643 2589999999999999999999999999
Q ss_pred HHHHHHHhccCCCCccccCCCccccCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCc
Q 004955 376 KMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLLFAQFSELVNDFYNNGLPSNLTGGRNPSL 455 (722)
Q Consensus 376 ~~ie~ElNS~~DNPlI~~~~~~vl~GGNF~g~~va~AmD~l~lAla~lg~l~~~r~~~Lvn~~~n~GLP~~L~~~~~p~l 455 (722)
+.+++|+||+||||||+.+.++|+|||||||+||++|||+|++|++++|++++||+.+|+||.+| |||+||+ ++||+
T Consensus 300 ~~le~ElNsvtDNPlv~~~~~~ViSgGNFhg~pva~A~D~L~iAlae~a~iseRRi~~Lvnp~~s-gLP~FL~--~~~G~ 376 (498)
T COG2986 300 RVLEIELNSVTDNPLVFGDEEEVISGGNFHGEPVALAADFLAIALAELAAISERRIARLVNPALS-GLPAFLV--PKPGL 376 (498)
T ss_pred HHHhhhhhhcCCCCcccCCCCccccCCCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhc-cCCcccc--CCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999997 9999999 58999
Q ss_pred cccchHHHHHHHHHHHHHhhccCCCcccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 004955 456 DYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEEN 535 (722)
Q Consensus 456 ~~Gf~~~qi~~aal~sEl~~LA~PvS~~~~sae~~nqDv~Sma~~saRk~~~~ve~l~~~~A~ell~a~QAidLR~~~~~ 535 (722)
|+|||++||++|||++|||.||+|+|+++.|++.+||||+|||++++||+.+++||+++|+|||++++|||+|||. ...
T Consensus 377 nsGfMI~Q~taAAL~sENk~LA~PaSvDs~ptSanqEDhvSm~~~aa~k~~~iien~~~IlaiE~l~AaQa~dlr~-~~~ 455 (498)
T COG2986 377 NSGFMIAQYTAAALVSENKVLAHPASVDSIPTSANQEDHVSMATHAARKLLEIIENLRTILAIELLAAAQAVDLRA-PLD 455 (498)
T ss_pred ccchHHHHHHHHHHHHHHHhhcCCcccCCccccCcccchhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcc-ccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999997 445
Q ss_pred hhhHHHHHHHHHHHHHhhcccCCCCCCCcCCHHHHHHHHhhh
Q 004955 536 LKNTVKNTVSQVAKRVLTMGVNGELHPSRFCEKDLIKVVDRE 577 (722)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dR~~~~~l~~~~~~~ 577 (722)
+++.++.+++.+|++|++++ +||++.+||.++.+..
T Consensus 456 ~s~~t~~~~~~vR~~V~~~~------~DR~~~~Di~~~~~~l 491 (498)
T COG2986 456 LSPGTKAAYAAVREKVPFLD------DDRPFAPDIEAAAALL 491 (498)
T ss_pred cChHHHHHHHHHHhhCCccc------cCCccchhHHHHHHHH
Confidence 99999999999999999866 5999999999987654
No 5
>TIGR01225 hutH histidine ammonia-lyase. This enzyme deaminates histidine to urocanic acid, the first step in histidine degradation. It is closely related to phenylalanine ammonia-lyase.
Probab=100.00 E-value=1.4e-142 Score=1193.34 Aligned_cols=487 Identities=31% Similarity=0.477 Sum_probs=466.8
Q ss_pred EEEcCCCcCHHHHHHHHhhCCCCeEEeCHHHHHHHHHHHHHHHHHHhcCCceeccccCCCCCCCccc--cchhhhHHHHH
Q 004955 60 VKLGGESLTIGQVTAIAAHDSGVKVELAEAARAGVKASSDWVMDSMMKGTDSYGVTTGFGATSHRRT--KQGGALQKELI 137 (722)
Q Consensus 60 v~l~g~~Lti~~v~avA~~~~~~~V~l~~~a~~ri~~s~~~l~~~~~~g~~iYGVnTGfG~~a~~~~--~~~~~LQ~~Li 137 (722)
|+|||++||++||++||+ ++.+|+|++++++||++||+++++.+++|++|||||||||+++|+++ ++..+||+|||
T Consensus 1 v~l~g~~Lt~~~v~~va~--~~~~v~ls~~a~~~i~~s~~~l~~~~~~g~~iYGvnTGfG~~~d~~i~~~~~~~lq~nLi 78 (506)
T TIGR01225 1 VTLDGGSLTLEDVVAVAR--HGARVSLSAAAREAVAKSRAAIEQIIAGDETVYGINTGFGKLASTRIDSEDLAELQRNLV 78 (506)
T ss_pred CEeCCCCCCHHHHHHHHh--CCCceeeCHHHHHHHHHHHHHHHHHHhcCCceeeecCCCCCccCcccCHHHHHHHHHHHH
Confidence 479999999999999997 47899999999999999999999999999999999999999999985 67899999999
Q ss_pred HHhhccccCCCCCCCCCCChHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHhCCCccccCCCCCCCCcCCchHHHHHH
Q 004955 138 RFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIA 217 (722)
Q Consensus 138 r~~~aGv~~~g~~~g~~lp~~~vRA~MlvRlNsL~~G~SGVr~evle~L~~lLN~~i~P~VP~rGSVGASGDL~PLS~Ia 217 (722)
|+|+||+| ++||+++|||+|++|+|+|++|||||||+++|+|++|||+||+|+||++|||||||||+||||||
T Consensus 79 ~sha~GvG-------~~l~~~~vRa~m~~Rlnsl~~G~SGvr~~vv~~L~~~LN~gi~P~VP~~GSvGaSGDL~pLAhia 151 (506)
T TIGR01225 79 RSHAAGVG-------DPLDEEVVRAIMALRLNSLAKGYSGVRAEVLDQLIALLNAGVHPVVPEKGSVGASGDLAPLAHMA 151 (506)
T ss_pred HHHhcCCC-------CCCCHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHHHHhCCCcccCCCCCCcCcccchHHHHHHH
Confidence 99999995 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCccccCCCCeeeCHHHHHHHCCCCCCCcccCCccchhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004955 218 GLLTGRPNSKAVGPNGQVLNPTEAFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEV 297 (722)
Q Consensus 218 ~~L~G~g~~~~~~~~G~~~~a~eAL~~aGl~~~P~~L~pKEGLALiNGTa~s~a~aalal~~a~~L~~~a~v~~Als~Ea 297 (722)
++|+|||+++ |+|+++++.|||+++||+ |++|++||||||||||++|+|+++++++++++|++++++++||++|+
T Consensus 152 l~LiGeg~v~---~~G~~~~a~eaL~~~gl~--P~~l~~KEgLALiNGt~~~~a~aalal~~a~~L~~~a~~~~Als~Ea 226 (506)
T TIGR01225 152 LVLMGEGKAF---FKGERMPAAEALAAAGLE--PVTLAAKEGLALINGTQAMTALALLALFDAEDLLRAADITAALSVEA 226 (506)
T ss_pred HHHcCCCceE---ECCEeecHHHHHHHcCCC--CCCCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999875 799999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred hcCCccccchhhhhcCCCchHHHHHHHHHHHhcCChhhhhhhhhcccCCCCCCCCCcccccccccchhhHHHHHHHHHHH
Q 004955 298 MNGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAQKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRAATKM 377 (722)
Q Consensus 298 l~G~~~~fd~~ih~~RphpGQ~e~A~~ir~lL~gS~~~~~~~~~~~~d~~~~~~QD~YSlR~~PQvlG~~~d~l~~a~~~ 377 (722)
|+|++++|||++|++||||||+++|++||.+|+||+++...+ ..+++||||||||+||||||++|+|++++++
T Consensus 227 l~g~~~~f~~~i~~~RphpGQ~~~A~~ir~lL~gS~l~~~~~-------~~~~vQD~ySlRc~PQv~Ga~~d~l~~~~~~ 299 (506)
T TIGR01225 227 LLGTTKPFDPDIHEARPHRGQIDVAARFRELLAGSEITLSHR-------DCDRVQDAYSLRCQPQVHGAVLDTLDQVAEV 299 (506)
T ss_pred HCCcchhhCHHHHHhCCChhHHHHHHHHHHHhCCCccchhcc-------cCCCCCCcccchhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999876531 1357999999999999999999999999999
Q ss_pred HHHHHhccCCCCccccCCCccccCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCccc
Q 004955 378 IEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLLFAQFSELVNDFYNNGLPSNLTGGRNPSLDY 457 (722)
Q Consensus 378 ie~ElNS~~DNPlI~~~~~~vl~GGNF~g~~va~AmD~l~lAla~lg~l~~~r~~~Lvn~~~n~GLP~~L~~~~~p~l~~ 457 (722)
|++||||+||||||++++++++|||||||+||+++||++++|++++|++++||+.+|+||.+| |||+||+ ++|++++
T Consensus 300 ve~ElNS~tDNPli~~~~~~v~~gGNFhg~~vala~D~l~iAla~la~~serr~~~L~~p~~s-gLP~fL~--~~~g~~s 376 (506)
T TIGR01225 300 LGIELNSATDNPLVFADGGEVVSGGNFHGEPVALAADFLAIAIAELGSISERRIERLLDPNLS-GLPPFLA--PDGGLNS 376 (506)
T ss_pred HHHHHhcCCCCCceeCCCCceeeCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc-CCChhhC--CCCCccc
Confidence 999999999999999887899999999999999999999999999999999999999999997 9999998 4789999
Q ss_pred cchHHHHHHHHHHHHHhhccCCCcccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 004955 458 GFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLK 537 (722)
Q Consensus 458 Gf~~~qi~~aal~sEl~~LA~PvS~~~~sae~~nqDv~Sma~~saRk~~~~ve~l~~~~A~ell~a~QAidLR~~~~~~~ 537 (722)
|||++||+++||++|||+||+|+|++++|++.+||||||||++||||+.+++|++++|+|||++++|||+|||.. .+.+
T Consensus 377 Gf~~~q~taaal~aE~r~La~PaS~~s~pts~~~ED~vSmg~~aar~~~~~v~~~~~ilAiEll~a~QAldlr~~-~~~~ 455 (506)
T TIGR01225 377 GFMIAQYTAAALVSENKALSHPASVDSIPTSANQEDHVSMGAHAARKLREMIENVRRVIAIELLAACQGLEFRDP-LKTS 455 (506)
T ss_pred chHHHHHHHHHHHHHHHHhcCCCcCCcccccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999973 4568
Q ss_pred hHHHHHHHHHHHHHhhcccCCCCCCCcCCHHHHHHHHhhh
Q 004955 538 NTVKNTVSQVAKRVLTMGVNGELHPSRFCEKDLIKVVDRE 577 (722)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~dR~~~~~l~~~~~~~ 577 (722)
+..+++++.+|+.+++++ +||++.+||.++.+..
T Consensus 456 ~~~~~~~~~vR~~vp~~~------~DR~~~~dI~~~~~~l 489 (506)
T TIGR01225 456 AKLEKAYQAVRSVVAPLD------GDRFFAPDIEAARDLV 489 (506)
T ss_pred HHHHHHHHHHHHhCCCCc------CCCCcHHHHHHHHHHH
Confidence 999999999999998755 6999999999988754
No 6
>TIGR03832 Tyr_2_3_mutase tyrosine 2,3-aminomutase. Members of this protein family are tyrosine 2,3-aminomutase. It is variable from member to member as to whether the (R)-beta-Tyr or (S)-beta-Tyr is the preferred product from L-Tyr. This enzyme tends to occur in secondary metabolite biosynthesis systems, as in the production of chondramides in Chondromyces crocatus.
Probab=100.00 E-value=3.5e-141 Score=1183.47 Aligned_cols=491 Identities=31% Similarity=0.456 Sum_probs=465.1
Q ss_pred EcCCCcCHHHHHHHHhhCCCCeEEeCHHHHHHHHHHHHHHHHHHhcCCceeccccCCCCCCCccc--cchhhhHHHHHHH
Q 004955 62 LGGESLTIGQVTAIAAHDSGVKVELAEAARAGVKASSDWVMDSMMKGTDSYGVTTGFGATSHRRT--KQGGALQKELIRF 139 (722)
Q Consensus 62 l~g~~Lti~~v~avA~~~~~~~V~l~~~a~~ri~~s~~~l~~~~~~g~~iYGVnTGfG~~a~~~~--~~~~~LQ~~Lir~ 139 (722)
|||.+||++||++||+ .+.+|+|++++++||++||+++++.+++|++|||||||||+++|+++ ++.++||+||||+
T Consensus 1 l~g~~Lt~~dv~~va~--~~~~v~ls~~a~~ri~~sr~~l~~~~~~g~~iYGvnTGfG~~~d~~i~~~~~~~lQ~nLi~s 78 (507)
T TIGR03832 1 IDGETLTVDAVRRVAE--QRAPCRVPAESLAKAAKSRAIFEGIAEQNVPIYGVTTGYGEMIYMLVDKEHEVELQTNLVRS 78 (507)
T ss_pred CCCCCCCHHHHHHHHh--CCCCeeeCHHHHHHHHHHHHHHHHHHhcCCceeeecCCCCCccCccCCHHHHHHHHHHHHHH
Confidence 5899999999999997 47899999999999999999999999999999999999999999976 6778999999999
Q ss_pred hhccccCCCCCCCCCCChHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHhCCCccccCCCCCCCCcCCchHHHHHHHH
Q 004955 140 LNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGL 219 (722)
Q Consensus 140 ~~aGv~~~g~~~g~~lp~~~vRA~MlvRlNsL~~G~SGVr~evle~L~~lLN~~i~P~VP~rGSVGASGDL~PLS~Ia~~ 219 (722)
|+||+| +++|+++|||+|++|+|+|++|||||||+++|+|++|||+||+|+||++|||||||||+||||||++
T Consensus 79 ha~GvG-------~~l~~~~vRa~m~iRln~l~~G~SGvr~~vve~L~~~LN~gi~PvVP~~GSvGaSGDL~pLAhial~ 151 (507)
T TIGR03832 79 HSAGVG-------PLFAEDEARAIVAARLNALAKGHSAVRPEILERLALYLNLGITPAIPEIGSLGASGDLAPLSHVAST 151 (507)
T ss_pred HhcCCC-------CCCCHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHHHHhCCCcccCCCCCCcCcccchHHHHHHHHH
Confidence 999995 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCccccCCCCeeeCHHHHHHHCCCCCCCcccCCccchhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004955 220 LTGRPNSKAVGPNGQVLNPTEAFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEVMN 299 (722)
Q Consensus 220 L~G~g~~~~~~~~G~~~~a~eAL~~aGl~~~P~~L~pKEGLALiNGTa~s~a~aalal~~a~~L~~~a~v~~Als~Eal~ 299 (722)
|+|+|+++ |+|+++|+.|||+++||+ |++|.|||||||||||++|+|+++++++++++|+.++++++||++|+|+
T Consensus 152 L~Geg~v~---~~G~~~~a~eaL~~~gl~--Pl~L~~KEgLALiNGt~~~~a~aala~~~a~~Ll~~a~~~~Als~Eal~ 226 (507)
T TIGR03832 152 LIGEGYVL---RDGRPVETAQVLRERGIE--PLELRFKEGLALINGTSAMTGLGALVVGRALEQVQQAEIVTALVIEALR 226 (507)
T ss_pred HcCCCcee---ECCEeecHHHHHHHcCCC--CcCCCCcchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999865 799999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred CCccccchhhhh-cCCCchHHHHHHHHHHHhcCChhhhhhhhhcc-----------cCCCCCCCCCcccccccccchhhH
Q 004955 300 GKPEFTDHLTHK-LKHHPGQIEAAAIMEHILDGSSYVKAAQKLHE-----------IDPLQKPKQDRYALRTSPQWLGPQ 367 (722)
Q Consensus 300 G~~~~fd~~ih~-~RphpGQ~e~A~~ir~lL~gS~~~~~~~~~~~-----------~d~~~~~~QD~YSlR~~PQvlG~~ 367 (722)
|++++|||++|+ +||||||+++|++||.+|+||+++........ ..+..+++||||||||+||||||+
T Consensus 227 g~~~~f~~~~~~~~RphpGQ~~~A~~ir~lL~gS~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vQD~ySlRc~PQv~Ga~ 306 (507)
T TIGR03832 227 GSTGPFLAEGHDIARPHPGQIDSAANMRALMRGSGLTVEHADLRREVQERKEAEKSVQRTEIYMQKAYSLRAIPQVLGAV 306 (507)
T ss_pred CChhhcCHHHHhhcCCCchHHHHHHHHHHHhccCccchhchhhhccccccccccccccccCCcCCccccchhHHHHHHHH
Confidence 999999999998 69999999999999999999999875432110 011235799999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCCccccCCCccccCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCC
Q 004955 368 IEVIRAATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLLFAQFSELVNDFYNNGLPSNL 447 (722)
Q Consensus 368 ~d~l~~a~~~ie~ElNS~~DNPlI~~~~~~vl~GGNF~g~~va~AmD~l~lAla~lg~l~~~r~~~Lvn~~~n~GLP~~L 447 (722)
+|+|++++++|++||||+||||+|+ ++++++|||||||+||+++||++++||+++|++++||+.+|+||.+|+|||+||
T Consensus 307 ~d~l~~~~~~le~ElNs~~DNPli~-~~~~v~sgGNFhg~~va~a~D~L~iAla~la~~serR~~~L~~p~~s~gLP~fL 385 (507)
T TIGR03832 307 RDTLYHARTKLEIELNSANDNPLFF-EGREIFHGANFHGQPVAFAMDFVTIALTQLGVLSERRLNRLLNRHLSYGLPEFL 385 (507)
T ss_pred HHHHHHHHHHHHHHHccCCCCCccc-CCCccccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCChhh
Confidence 9999999999999999999999998 568899999999999999999999999999999999999999999989999999
Q ss_pred CCCCCCCccccchHHHHHHHHHHHHHhhccCCCcccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004955 448 TGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAI 527 (722)
Q Consensus 448 ~~~~~p~l~~Gf~~~qi~~aal~sEl~~LA~PvS~~~~sae~~nqDv~Sma~~saRk~~~~ve~l~~~~A~ell~a~QAi 527 (722)
+. ++||+++|||++||+++||++|||+| +|+|+|++|++++||||||||++||||+.++++++++|+|||++++|||+
T Consensus 386 ~~-~~~g~~sGfm~~Q~~aaaL~aE~r~L-~PaS~~s~pts~~~ED~vSmg~~aark~~~~v~~~~~ilAiEll~aaQAl 463 (507)
T TIGR03832 386 VA-GDPGLHSGFAGAQYPATALVAENRTI-GPASTQSVPSNGDNQDVVSMGLIAARNARRVLSNNNKILAVELLAAAQAV 463 (507)
T ss_pred CC-CCCCCCccchHHHHHHHHHHHHHHHh-CCCccCCccccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 85 48899999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhhHHHHHHHHHHHHHhhcccCCCCCCCcCCHHHHHHHHh
Q 004955 528 DLRHLEENLKNTVKNTVSQVAKRVLTMGVNGELHPSRFCEKDLIKVVD 575 (722)
Q Consensus 528 dLR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dR~~~~~l~~~~~ 575 (722)
|||....++++..+++++.+|+.+++++ .||++.+||.++.+
T Consensus 464 dlr~~~~~~~~~~~~~~~~vr~~vp~~~------~DR~l~~di~~~~~ 505 (507)
T TIGR03832 464 DLAGRFDGLSPAARATYEAVRRLVPTLG------VDRYMADDIELVAD 505 (507)
T ss_pred HhhcccccCCHHHHHHHHHHHHhCCCCc------CCCCcHHHHHHHHH
Confidence 9997555789999999999999998755 69999999998765
No 7
>PRK09367 histidine ammonia-lyase; Provisional
Probab=100.00 E-value=5e-140 Score=1173.64 Aligned_cols=488 Identities=33% Similarity=0.494 Sum_probs=466.9
Q ss_pred CeEEEcCCCcCHHHHHHHHhhCCCCeEEeCHHHHHHHHHHHHHHHHHHhcCCceeccccCCCCCCCccc--cchhhhHHH
Q 004955 58 PVVKLGGESLTIGQVTAIAAHDSGVKVELAEAARAGVKASSDWVMDSMMKGTDSYGVTTGFGATSHRRT--KQGGALQKE 135 (722)
Q Consensus 58 ~~v~l~g~~Lti~~v~avA~~~~~~~V~l~~~a~~ri~~s~~~l~~~~~~g~~iYGVnTGfG~~a~~~~--~~~~~LQ~~ 135 (722)
..|+|||++||++||++||+ ++.+|++++++++||++||+++++.+++|++|||||||||+++++++ ++.++||+|
T Consensus 2 ~~v~l~g~~Lt~~~v~~va~--~~~~v~ls~~~~~ri~~sr~~l~~~~~~~~~iYGvnTG~G~~~~~~i~~~~~~~lq~n 79 (500)
T PRK09367 2 MTITLTPGTLTLEDLRAVAR--EGAKVELDPSARAAIAASRAVVERIVAEGRPVYGINTGFGKLASVRIAPEDLEQLQRN 79 (500)
T ss_pred ceEEECCCCCCHHHHHHHHh--CCCceeeCHHHHHHHHHHHHHHHHHHhcCCcccccccCCccccCcccCHHHHHHHHHH
Confidence 35899999999999999997 47899999999999999999999999999999999999999999987 678899999
Q ss_pred HHHHhhccccCCCCCCCCCCChHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHhCCCccccCCCCCCCCcCCchHHHH
Q 004955 136 LIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSY 215 (722)
Q Consensus 136 Lir~~~aGv~~~g~~~g~~lp~~~vRA~MlvRlNsL~~G~SGVr~evle~L~~lLN~~i~P~VP~rGSVGASGDL~PLS~ 215 (722)
|||+|+||+| ++||+++|||+|++|+|+|++||||||||++|+|++|||+||+|+||++|||||||||+||||
T Consensus 80 Li~sha~GvG-------~~l~~~~vRa~m~~Rln~l~~G~SGV~~ev~~~L~~~lN~~i~P~VP~~GSvGaSGDL~pLah 152 (500)
T PRK09367 80 LVLSHAAGVG-------EPLPEEVVRLMMLLRLNSLARGHSGVRPEVIEALLALLNAGVTPVIPEKGSVGASGDLAPLAH 152 (500)
T ss_pred HHHHHHcCCC-------CCCCHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHHHHhCCCcccCCCCCCccccccHHHHHH
Confidence 9999999994 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCccccCCCCeeeCHHHHHHHCCCCCCCcccCCccchhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004955 216 IAGLLTGRPNSKAVGPNGQVLNPTEAFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFA 295 (722)
Q Consensus 216 Ia~~L~G~g~~~~~~~~G~~~~a~eAL~~aGl~~~P~~L~pKEGLALiNGTa~s~a~aalal~~a~~L~~~a~v~~Als~ 295 (722)
||++|+|+|+++ |+|+++++.|||+++||+ |++|+|||||||||||++|+|+++++++++++|++++++++||++
T Consensus 153 ial~L~Geg~v~---~~G~~~~a~eal~~~gl~--p~~l~~KegLALinGt~~~~a~~al~l~~a~~l~~~a~~~~Als~ 227 (500)
T PRK09367 153 MALVLLGEGEAF---YKGERLPAAEALAKAGLE--PVTLAAKEGLALINGTQASTALALLGLFDAEDLLAAADVAGALSV 227 (500)
T ss_pred HHHHHhCCCcee---eCCEeecHHHHHHHcCCC--CcCCCCcchhHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999864 899999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHhcCCccccchhhhhcCCCchHHHHHHHHHHHhcCChhhhhhhhhcccCCCCCCCCCcccccccccchhhHHHHHHHHH
Q 004955 296 EVMNGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAQKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRAAT 375 (722)
Q Consensus 296 Eal~G~~~~fd~~ih~~RphpGQ~e~A~~ir~lL~gS~~~~~~~~~~~~d~~~~~~QD~YSlR~~PQvlG~~~d~l~~a~ 375 (722)
|+++|+++||||++|++||||||+++|++||.+|+||+++...+ ..+++||||||||+||||||++|+|++++
T Consensus 228 Eal~g~~~~f~~~~~~~Rph~Gq~~~A~~lr~lL~gS~l~~~~~-------~~~~vQD~ySlRc~PQv~Ga~~d~l~~~~ 300 (500)
T PRK09367 228 EALLGSDAPFDARIHALRGHPGQIDVAANLRALLEGSSIITSSH-------DCERVQDPYSLRCQPQVHGACLDQLRYAA 300 (500)
T ss_pred HHHCCchhhhCHHHHHhCCChhHHHHHHHHHHHHcCCccccccc-------CCCcCCccccchhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999876532 13579999999999999999999999999
Q ss_pred HHHHHHHhccCCCCccccCCCccccCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCc
Q 004955 376 KMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLLFAQFSELVNDFYNNGLPSNLTGGRNPSL 455 (722)
Q Consensus 376 ~~ie~ElNS~~DNPlI~~~~~~vl~GGNF~g~~va~AmD~l~lAla~lg~l~~~r~~~Lvn~~~n~GLP~~L~~~~~p~l 455 (722)
++|++||||+||||+|+++ ++++|||||||+||+++||++++||+++|++++||+.+|+||.+| |||+||+ ++|++
T Consensus 301 ~~v~~ElNS~~DNPlv~~~-~~v~~gGNF~g~~lala~D~L~iAla~la~~serR~~~L~~p~~s-gLp~fL~--~~~g~ 376 (500)
T PRK09367 301 EVLEIEANAVTDNPLVFPD-GDVISGGNFHGEPVAFAADFLAIAVAEIGSISERRIARLVDPALS-GLPPFLV--PDPGL 376 (500)
T ss_pred HHHHHHHhcCCcCCcccCC-CCeeeCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc-CCChhhC--CCCCc
Confidence 9999999999999999874 789999999999999999999999999999999999999999997 9999998 47899
Q ss_pred cccchHHHHHHHHHHHHHhhccCCCcccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 004955 456 DYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEEN 535 (722)
Q Consensus 456 ~~Gf~~~qi~~aal~sEl~~LA~PvS~~~~sae~~nqDv~Sma~~saRk~~~~ve~l~~~~A~ell~a~QAidLR~~~~~ 535 (722)
++|||++||+++||++|+|+||+|+|++++|++.+||||||||++||||+.+++|++++|+|||++++|||+|||. ..+
T Consensus 377 ~~G~~~~q~taaal~ae~r~la~PaS~~s~pts~~~ED~~Smg~~aark~~~~~~~~~~ilAiell~a~QA~dlr~-~~~ 455 (500)
T PRK09367 377 NSGFMIAQVTAAALVSENKTLAHPASVDSIPTSANQEDHVSMGTHAARKLREMAENLRRVLAIELLAAAQGLDFRA-PLK 455 (500)
T ss_pred ccchHHHHHHHHHHHHHHHHhcCCCcCCCcCccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999997 345
Q ss_pred hhhHHHHHHHHHHHHHhhcccCCCCCCCcCCHHHHHHHHhhh
Q 004955 536 LKNTVKNTVSQVAKRVLTMGVNGELHPSRFCEKDLIKVVDRE 577 (722)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dR~~~~~l~~~~~~~ 577 (722)
+++..+++++.+|+.+++++ +||++.+||.++.+..
T Consensus 456 ~~~~~~~~~~~vr~~vp~~~------~Dr~l~~di~~~~~~l 491 (500)
T PRK09367 456 TSPALEAAYALLREKVPFLD------EDRYFAPDIEAAAELV 491 (500)
T ss_pred CChHHHHHHHHHHhhCCCCc------cCCCchHHHHHHHHHH
Confidence 78899999999999998755 6999999999987754
No 8
>PF00221 Lyase_aromatic: Aromatic amino acid lyase; InterPro: IPR001106 This entry represents phenylalanine ammonia-lyase (PAL; 4.3.1.24 from EC) and the mechanistically related protein histidine ammonia lyase (HAL; 4.3.1.3 from EC). Both contain a catalytic Ala-Ser-Gly triad that is post-translationally cyclised []. PAL is a key biosynthetic catalyst in phenylpropanoid assembly in plants and fungi, and is involved in the biosynthesis of a wide variety of secondary metabolites such as flavanoids, furanocoumarin phytoalexins and cell wall components. These compounds are important for normal growth and in responses to environmental stress. HAL catalyses the first step in histidine degradation, the removal of an ammonia group from histidine to produce urocanic acid. The core domain in PAL and Hal share about 30% sequence identity, with PAL containing an additional approximately 160 residues extending from the common fold [].; GO: 0016841 ammonia-lyase activity, 0009058 biosynthetic process; PDB: 2RJR_A 2RJS_A 2OHY_B 3KDZ_B 2QVE_A 3KDY_A 2NYF_A 2YII_B 1Y2M_B 1T6P_B ....
Probab=100.00 E-value=2.7e-136 Score=1139.88 Aligned_cols=470 Identities=38% Similarity=0.576 Sum_probs=422.4
Q ss_pred EEEcCCCcCHHHHHHHHhhCCCCeEEeCHHHHHHHHHHHHHHHHHHhcCCceeccccCCCCCCCccc--cchhhhHHHHH
Q 004955 60 VKLGGESLTIGQVTAIAAHDSGVKVELAEAARAGVKASSDWVMDSMMKGTDSYGVTTGFGATSHRRT--KQGGALQKELI 137 (722)
Q Consensus 60 v~l~g~~Lti~~v~avA~~~~~~~V~l~~~a~~ri~~s~~~l~~~~~~g~~iYGVnTGfG~~a~~~~--~~~~~LQ~~Li 137 (722)
|+|||.+||++||++||+ .+.+|+|+|++++||++||+++++.+++|++|||||||||+++|+++ ++..++|+|||
T Consensus 1 i~l~g~~Lti~~v~~va~--~~~~v~l~~~a~~ri~~sr~~l~~~~~~~~~iYGvnTG~G~~~~~~i~~~~~~~~q~nll 78 (473)
T PF00221_consen 1 IVLDGESLTIDDVVAVAR--GGAKVELSPEARERIEASRAFLEDILASGKPIYGVNTGFGALKDVRIPPEELAELQRNLL 78 (473)
T ss_dssp EEESSSS--HHHHHHHHH--STSEEEE-HHHHHHHHHHHHHHHHHHHTTCTCTTTSBSSGGGTTSBC-GHHHHHHHHHHH
T ss_pred CeeCCCCCCHHHHHHHHc--CCCcEEECHHHHHHHHHHHHHHHHHHhcCCceeccccCCccccCCcCCHHHHHHHHHHHH
Confidence 689999999999999997 58999999999999999999999999999999999999999999987 78899999999
Q ss_pred HHhhccccCCCCCCCCCCChHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHhCCCccccCCCCCCCCcCCchHHHHHH
Q 004955 138 RFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIA 217 (722)
Q Consensus 138 r~~~aGv~~~g~~~g~~lp~~~vRA~MlvRlNsL~~G~SGVr~evle~L~~lLN~~i~P~VP~rGSVGASGDL~PLS~Ia 217 (722)
++|++|+| +++|+++|||+|++|+|+|++||||||||++++|++|||+||+|+||++|||||||||+||||||
T Consensus 79 ~~h~~gvG-------~~l~~~~vRa~m~~Rln~l~~G~SGv~~e~v~~l~~~ln~~i~P~Vp~~GSvGaSGDL~pLahia 151 (473)
T PF00221_consen 79 RSHAAGVG-------PPLPPEVVRAAMLLRLNSLARGYSGVRPELVERLVEMLNRGITPVVPERGSVGASGDLAPLAHIA 151 (473)
T ss_dssp HHH---EE-------EEB-HHHHHHHHHHHHHHHTTSTS---HHHHHHHHHHHHHTEEE-BEEES-SSSSSSHHHHHHHH
T ss_pred Hhhccccc-------cCCCHHHHHHHHHHHHHHHccCCCccCHHHHHHHHHHHhCCCCceeeCCCCCCccccHHHHHHHH
Confidence 99999995 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCccccCCCCeeeCHHHHHHHCCCCCCCcccCCccchhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004955 218 GLLTGRPNSKAVGPNGQVLNPTEAFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEV 297 (722)
Q Consensus 218 ~~L~G~g~~~~~~~~G~~~~a~eAL~~aGl~~~P~~L~pKEGLALiNGTa~s~a~aalal~~a~~L~~~a~v~~Als~Ea 297 (722)
++|+|||+++ |+|+++|+.|||+++||+ |++|+|||||||||||++++|+++++++++++|++++++++||++|+
T Consensus 152 l~l~Geg~v~---~~G~~~~a~eal~~~gl~--p~~l~~kEgLAlinGt~~~~a~aalal~~a~~ll~~a~~~~Als~Ea 226 (473)
T PF00221_consen 152 LALIGEGEVY---YDGERMPAAEALARAGLE--PLELGPKEGLALINGTAVSTALAALALHDARRLLRLADIVAALSLEA 226 (473)
T ss_dssp HHHTTSTTEE---ECTEEEEHHHHHHHTT-S--S---TTTHHHHHHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCccee---ecceeccHHHHHHhcCcC--CeecCCcchHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999875 799999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred hcCCccccchhhhhcCCCchHHHHHHHHHHHhcCChhhhhhhhhcccCCCCCCCCCcccccccccchhhHHHHHHHHHHH
Q 004955 298 MNGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAQKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRAATKM 377 (722)
Q Consensus 298 l~G~~~~fd~~ih~~RphpGQ~e~A~~ir~lL~gS~~~~~~~~~~~~d~~~~~~QD~YSlR~~PQvlG~~~d~l~~a~~~ 377 (722)
++|+++||||++|++||||||+++|++||++|+||++++..+ ++||||||||+||||||++|+|++++++
T Consensus 227 l~g~~~~f~~~~~~~rph~Gq~~~A~~lr~lL~gS~l~~~~~----------~vQDpySlRc~PQv~G~~~d~l~~~~~~ 296 (473)
T PF00221_consen 227 LRGNPSPFDPRVHAARPHPGQIESAANLRELLKGSYLWSSHD----------RVQDPYSLRCAPQVHGAARDALAHAREV 296 (473)
T ss_dssp TT-BCGGG-HHHHHTST-HHHHHHHHHHHHHHTT-SSSBHHH----------CSSS-HHHHTHHHHHHHHHHHHHHHHHH
T ss_pred hcCchhhhhhhhhcccCCchHHHHHHHHHHhhCCCcCccccc----------ccCCcceeeehHHHhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987643 5999999999999999999999999999
Q ss_pred HHHHHhccCCCCccccCCCccccCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCccc
Q 004955 378 IEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLLFAQFSELVNDFYNNGLPSNLTGGRNPSLDY 457 (722)
Q Consensus 378 ie~ElNS~~DNPlI~~~~~~vl~GGNF~g~~va~AmD~l~lAla~lg~l~~~r~~~Lvn~~~n~GLP~~L~~~~~p~l~~ 457 (722)
|++||||++|||+|++++++++|||||||+||+++||++++|++++|++++||+.+|+||.+|+|||+||++ +|++++
T Consensus 297 v~~ElNs~~DNPlv~~~~~~v~~ggnF~~~~va~a~D~l~~Ala~l~~~s~rR~~~L~~p~~~~gLP~fL~~--~~g~~~ 374 (473)
T PF00221_consen 297 VEIELNSATDNPLVFPDDGRVLSGGNFHGQPVALAMDALAIALAHLANLSERRIARLVNPAFNNGLPPFLAA--EPGLNS 374 (473)
T ss_dssp HHHHHTS--SSSEEEGGGTEEE-S-TT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTTTS-GGGSS--SCTTB-
T ss_pred HHHHHcCCCCCceEecCCCeeeecCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCcCCCChhhcC--CCCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999998899999995 789999
Q ss_pred cchHHHHHHHHHHHHHhhccCCCcccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 004955 458 GFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLK 537 (722)
Q Consensus 458 Gf~~~qi~~aal~sEl~~LA~PvS~~~~sae~~nqDv~Sma~~saRk~~~~ve~l~~~~A~ell~a~QAidLR~~~~~~~ 537 (722)
|||++||++++|++|+|+||+|+|.|++|++++||||+|||++||||+.+++|++++|+|||++++|||+|||.....++
T Consensus 375 G~~~~q~~aaaL~aE~r~La~P~s~~s~pts~~~ED~~Sm~~~aa~k~~~~v~~~~~ilAiell~a~QA~dlr~~~~~~~ 454 (473)
T PF00221_consen 375 GFMILQYTAAALVAENRHLANPASIDSIPTSGGQEDHVSMGPLAARKLRRIVENLRYILAIELLAAAQALDLRGPERSLG 454 (473)
T ss_dssp TTHHHHHHHHHHHHHHHHHTS-SCGGG--BTTTTBSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHhHHHHHHHHHHHhhccCcccccccchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999996556679
Q ss_pred hHHHHHHHHHHHHHhhcc
Q 004955 538 NTVKNTVSQVAKRVLTMG 555 (722)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~ 555 (722)
+..+++++.+|+.+++++
T Consensus 455 ~~~~~~~~~~R~~vp~~~ 472 (473)
T PF00221_consen 455 PGTRALYDAVRSVVPFLD 472 (473)
T ss_dssp HHHHHHHHHHHHHSTT-S
T ss_pred HHHHHHHHHHHHhCCccc
Confidence 999999999999998754
No 9
>cd00332 PAL-HAL Phenylalanine ammonia-lyase (PAL) and histidine ammonia-lyase (HAL). PAL and HAL are members of the Lyase class I_like superfamily of enzymes that, catalyze similar beta-elimination reactions and are active as homotetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. PAL, present in plants and fungi, catalyzes the conversion of L-phenylalanine to E-cinnamic acid. HAL, found in several bacteria and animals, catalyzes the conversion of L-histidine to E-urocanic acid. Both PAL and HAL contain the cofactor 3, 5-dihydro-5-methylidene-4H-imidazol-4-one (MIO) which is formed by autocatalytic excision/cyclization of the internal tripeptide, Ala-Ser-Gly. PAL is being explored as enzyme substitution therapy for Phenylketonuria (PKU), a disorder which involves an inability to metabolize phenylalanine. HAL failure in humans results in the disease histidinemia.
Probab=100.00 E-value=5.9e-135 Score=1120.03 Aligned_cols=442 Identities=40% Similarity=0.571 Sum_probs=427.3
Q ss_pred CCcCHHHHHHHHhhCCCCeEEeCHHHHHHHHHHHHHHHHHHhcCCceeccccCCCCCCCcccc--chhhhHHHHHHHhhc
Q 004955 65 ESLTIGQVTAIAAHDSGVKVELAEAARAGVKASSDWVMDSMMKGTDSYGVTTGFGATSHRRTK--QGGALQKELIRFLNS 142 (722)
Q Consensus 65 ~~Lti~~v~avA~~~~~~~V~l~~~a~~ri~~s~~~l~~~~~~g~~iYGVnTGfG~~a~~~~~--~~~~LQ~~Lir~~~a 142 (722)
.+||++||++||+ ++.+|++++++++||++||+++++.+++|++|||||||||+++|++++ +..++|+||||+|+|
T Consensus 1 ~~Lt~~~v~~va~--~~~~v~ls~~a~~ri~~s~~~l~~~~~~~~~iYGvnTG~G~~~d~~i~~~~~~~~q~nLi~sha~ 78 (444)
T cd00332 1 GSLTLEDVVAVAR--GGEKVELSPEARERVDASRAALEEAAAEGKPVYGVNTGFGALADVRIDDADLRALQRNLLRSHAA 78 (444)
T ss_pred CCCCHHHHHHHHh--CCCceeeCHHHHHHHHHHHHHHHHHHhcCCceeeeCCCCCCcCCcccCHHHHHHHHHHHHHHHhc
Confidence 4799999999997 478999999999999999999999999999999999999999999864 578999999999999
Q ss_pred cccCCCCCCCCCCChHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHhCCCccccCCCCCCCCcCCchHHHHHHHHhcc
Q 004955 143 GIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTG 222 (722)
Q Consensus 143 Gv~~~g~~~g~~lp~~~vRA~MlvRlNsL~~G~SGVr~evle~L~~lLN~~i~P~VP~rGSVGASGDL~PLS~Ia~~L~G 222 (722)
|+| +++|+++|||+|++|+|+|++|||||||+++|+|++|||+||+|+||++|||||||||+||||||++|+|
T Consensus 79 GvG-------~~l~~~~vRa~m~~Rln~l~~G~SGV~~~vv~~L~~~lN~~i~P~VP~~GSvGaSGDL~pLahial~l~G 151 (444)
T cd00332 79 GVG-------PPLPEEVVRAAMLLRLNSLARGHSGVRPEVLERLVALLNAGVTPVVPERGSVGASGDLAPLAHIALALIG 151 (444)
T ss_pred CCC-------CCCCHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHHHHhCCCcccCCCCCCcccccchHHHHHHHHHHcC
Confidence 995 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccCCCCeeeCHHHHHHHCCCCCCCcccCCccchhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 004955 223 RPNSKAVGPNGQVLNPTEAFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEVMNGKP 302 (722)
Q Consensus 223 ~g~~~~~~~~G~~~~a~eAL~~aGl~~~P~~L~pKEGLALiNGTa~s~a~aalal~~a~~L~~~a~v~~Als~Eal~G~~ 302 (722)
||+++ |+|+++++.|||+++||+ |++|++||||||||||++|+|+++++++++++|+.++++++||++|+++|++
T Consensus 152 eg~v~---~~G~~~~a~eal~~~gl~--p~~l~~KegLALingta~~~a~aalal~~a~~l~~~a~~~~Als~Eal~g~~ 226 (444)
T cd00332 152 EGEVF---YKGERMPAAEALARAGLE--PLELGAKEGLALINGTAVMTALAALALHDAERLLDLADIAGALSLEALRGSD 226 (444)
T ss_pred CCcEE---ECCEEeeHHHHHHHcCCC--CCCCCCcchhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 99865 799999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhhcCCCchHHHHHHHHHHHhcCChhhhhhhhhcccCCCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHH
Q 004955 303 EFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAQKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRAATKMIEREI 382 (722)
Q Consensus 303 ~~fd~~ih~~RphpGQ~e~A~~ir~lL~gS~~~~~~~~~~~~d~~~~~~QD~YSlR~~PQvlG~~~d~l~~a~~~ie~El 382 (722)
++|||++|++||||||+++|++||.+|+||++|... +..+++||||||||+||||||++|+|++++++|++||
T Consensus 227 ~~f~~~~~~~rphpGq~~~A~~lr~lL~gs~l~~~~-------~~~~~lQDpySlRc~PQv~G~~~d~l~~~~~~v~~El 299 (444)
T cd00332 227 APFDPRIHAARPHPGQIEVAANLRALLAGSSLWESH-------DGERRVQDPYSLRCAPQVHGAARDALRYAARVLEIEL 299 (444)
T ss_pred hhcCHhHHhhCCChhHHHHHHHHHHHhCCCcccccc-------CCCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999987321 1245899999999999999999999999999999999
Q ss_pred hccCCCCccccCCCccccCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCccccchHH
Q 004955 383 NSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLLFAQFSELVNDFYNNGLPSNLTGGRNPSLDYGFKGA 462 (722)
Q Consensus 383 NS~~DNPlI~~~~~~vl~GGNF~g~~va~AmD~l~lAla~lg~l~~~r~~~Lvn~~~n~GLP~~L~~~~~p~l~~Gf~~~ 462 (722)
||+||||+|++++++++|||||||+||+++||++++|++++|++++||+.+|+||.+| |||+||++ +|++++|||++
T Consensus 300 Ns~~DNPli~~~~~~v~~ggNF~~~~va~a~D~l~iala~la~~s~rr~~~L~~p~~~-gLp~fL~~--~~g~~~Gf~~~ 376 (444)
T cd00332 300 NSVTDNPLVDPDNGEVLSGGNFHGQPVALAMDFLAIALAELANLSERRIARLVNPALS-GLPAFLVA--DPGLNSGFMIA 376 (444)
T ss_pred hcCCCCCceeCCCCceeeCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc-CCChhhCC--CCCcccchHHH
Confidence 9999999999988999999999999999999999999999999999999999999997 99999984 78899999999
Q ss_pred HHHHHHHHHHHhhccCCCcccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004955 463 EIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLR 530 (722)
Q Consensus 463 qi~~aal~sEl~~LA~PvS~~~~sae~~nqDv~Sma~~saRk~~~~ve~l~~~~A~ell~a~QAidLR 530 (722)
||+++||++|+|+||+|+|+|++|++++||||+|||++||||+.+++|++++|+|||++++|||+|||
T Consensus 377 q~~aaal~ae~r~la~P~s~~s~~~s~~~ED~~Sm~~~aa~~~~~~v~~~~~ilAiell~a~QA~dlr 444 (444)
T cd00332 377 QYTAAALVAENKALAHPASVDSIPTSAGQEDHVSMGLIAARKLREIVDNLRRILAIELLAAAQALDLR 444 (444)
T ss_pred HHHHHHHHHHHHHhcCCCcCCCccccCCccchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999997
No 10
>cd01594 Lyase_I_like Lyase class I_like superfamily: contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase, which catalyze similar beta-elimination reactions. Lyase class I_like superfamily of enzymes that catalyze beta-elimination reactions and are active as homotetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. This superfamily contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase. The lyase class I family comprises proteins similar to class II fumarase, aspartase, adenylosuccinate lyase, argininosuccinate lyase, and 3-carboxy-cis, cis-muconate lactonizing enzyme which, for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. Histidine or phenylalanine ammonia-lyase catalyze a beta-elimination of ammonia from histidine and phenylalanine, respective
Probab=99.78 E-value=4.6e-19 Score=179.98 Aligned_cols=225 Identities=23% Similarity=0.143 Sum_probs=197.0
Q ss_pred HHHHHHHHHHHhcCCCCcccHHHHHHHHHHHhCCCccccCCCCCCCCcCCchHHHHHHHHhccCCCccccCCCCeeeCHH
Q 004955 160 TRAAMLVRVNTLLQGYSGIRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGQVLNPT 239 (722)
Q Consensus 160 vRA~MlvRlNsL~~G~SGVr~evle~L~~lLN~~i~P~VP~rGSVGASGDL~PLS~Ia~~L~G~g~~~~~~~~G~~~~a~ 239 (722)
+|+.|.+|+|.+..| |..+|+|++... ++|..++
T Consensus 1 ~~~~~~i~~a~~~~~-----------------------------------------i~~~L~~~~~~~---~~~~~~~-- 34 (231)
T cd01594 1 VRADLLVELAAALAL-----------------------------------------VEEVLAGRAGEL---AGGLHGS-- 34 (231)
T ss_pred CHHHHHHHHHHHHHH-----------------------------------------HHHHHHHHHHHH---hccccCC--
Confidence 589999999999998 888899886532 3443332
Q ss_pred HHHHHCCCCCCCcccCCccchhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccchhhhhcCCCchHH
Q 004955 240 EAFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQI 319 (722)
Q Consensus 240 eAL~~aGl~~~P~~L~pKEGLALiNGTa~s~a~aalal~~a~~L~~~a~v~~Als~Eal~G~~~~fd~~ih~~RphpGQ~ 319 (722)
.+..|++++..|+++++.+.+..++.++..++.....+.+...|..++++.++.+ |
T Consensus 35 -------------~~~h~g~s~~d~~~t~~~~~~~~~l~~l~~~l~~~~~~l~~~a~~~~~~~~~~~t-------h---- 90 (231)
T cd01594 35 -------------ALVHKGRSSNDIGTTALRLALRDALDDLLPLLKALIDALALKAEAHKGTVMPGRT-------H---- 90 (231)
T ss_pred -------------CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEeeccc-------c----
Confidence 2889999999999999999999999999999999999999999999999999977 1
Q ss_pred HHHHHHHHHhcCChhhhhhhhhcccCCCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHhccCCCCccccCCCccc
Q 004955 320 EAAAIMEHILDGSSYVKAAQKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRAATKMIEREINSVNDNPLIDVSRNKAL 399 (722)
Q Consensus 320 e~A~~ir~lL~gS~~~~~~~~~~~~d~~~~~~QD~YSlR~~PQvlG~~~d~l~~a~~~ie~ElNS~~DNPlI~~~~~~vl 399 (722)
+ + + ..|+||+|+|||.||++|+.+|.|..+
T Consensus 91 -----------~----q--------~--A~p~t~g~~~~~~~~~l~~~~~rL~~~------------------------- 120 (231)
T cd01594 91 -----------L----Q--------D--AQPVTLGYELRAWAQVLGRDLERLEEA------------------------- 120 (231)
T ss_pred -----------c----c--------c--CccccHHHHHHHHHHHHHHHHHHHHHH-------------------------
Confidence 0 0 0 137999999999999999999999999
Q ss_pred cCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHhhccCC
Q 004955 400 HGGNFQGTPIGVSMDNTRLAIASIGKLLFAQFSELVNDFYNNGLPSNLTGGRNPSLDYGFKGAEIAMASYCSELQFLANP 479 (722)
Q Consensus 400 ~GGNF~g~~va~AmD~l~lAla~lg~l~~~r~~~Lvn~~~n~GLP~~L~~~~~p~l~~Gf~~~qi~~aal~sEl~~LA~P 479 (722)
+++..++.+++++++++++.+.++..+.+|..+ ..|+++. ..++.+.+++..+..++.++.|+..+++|
T Consensus 121 --------~~~~~~~~l~~~~~~l~r~a~d~~~~~~~~~~~-~~~~~~~--~~~gSS~mp~k~Np~~~e~~~~~~~~~~~ 189 (231)
T cd01594 121 --------AVAEALDALALAAAHLSKIAEDLRLLLSGEFGE-LGEPFLP--GQPGSSIMPQKVNPVAAELVRGLAGLVIG 189 (231)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCe-eeCccCC--CCCCCcCCCCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999875 5566664 25666899999999999999999999999
Q ss_pred Ccccccccc-----cccccccchhHHHHHHHHHHHHHHHHH
Q 004955 480 VTNHVQSAE-----QHNQDVNSLGLISSRKTAEAVDILKLM 515 (722)
Q Consensus 480 vS~~~~sae-----~~nqDv~Sma~~saRk~~~~ve~l~~~ 515 (722)
.+.++.++. .+|||.++++...++.+.++.+.+..|
T Consensus 190 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~ 230 (231)
T cd01594 190 NLVAVLTALKGGPERDNEDSPSMREILADSLLLLIDALRLL 230 (231)
T ss_pred hHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHh
Confidence 998876665 789999999999999999999988765
No 11
>PLN02972 Histidyl-tRNA synthetase
Probab=94.92 E-value=0.075 Score=64.03 Aligned_cols=186 Identities=20% Similarity=0.189 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccccchhhh-hcCCCchHHHHHHHHHHHhcCChhhhhhhhhcccCCCCCCCCCcccccc
Q 004955 281 NILAIMSEVLSAIFAEVMNGKPEFTDHLTH-KLKHHPGQIEAAAIMEHILDGSSYVKAAQKLHEIDPLQKPKQDRYALRT 359 (722)
Q Consensus 281 ~~L~~~a~v~~Als~Eal~G~~~~fd~~ih-~~RphpGQ~e~A~~ir~lL~gS~~~~~~~~~~~~d~~~~~~QD~YSlR~ 359 (722)
..|....+.++|++||+.+|...+||-.-. +=-...-.+.+|..|.-||.||+++... +.-+|--
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~ 104 (763)
T PLN02972 39 TCLARVVDAVAALSCEAAKADVAAFDVLDSGDGLSDKDEADVAGDMKVLLNGSKLVGKA--------------QAEVFSK 104 (763)
T ss_pred hHHHHHHHHHHhcccHhhhcchhhccCCCCCCCcccccccchhccceeeecccchhhhh--------------HHHHHhc
Confidence 667888899999999999999999986432 2223334678899999999999987543 2356667
Q ss_pred cccchhhHHHHHHHHHHHHHHHHhccCCCCccccCCCccccCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHH----hh
Q 004955 360 SPQWLGPQIEVIRAATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLLFAQFSE----LV 435 (722)
Q Consensus 360 ~PQvlG~~~d~l~~a~~~ie~ElNS~~DNPlI~~~~~~vl~GGNF~g~~va~AmD~l~lAla~lg~l~~~r~~~----Lv 435 (722)
+|.++|-.+++.+..+..+.+|+||.. --..++.+ +-+ +.+..|++.+|++++.|-.. +.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~---------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (763)
T PLN02972 105 IPKINGIFREAVKAVHAVVRIELNSPV----KLGKRDAI---------QTG---EGLARAVQALGKLSVARAKLCLEVIG 168 (763)
T ss_pred CcccchHHHHHHHHHHHHHHHHhcCcc----cccccCcc---------hhh---HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 899999999999999999999999852 11112221 111 12778899999999988532 23
Q ss_pred ccccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHhhccCCCcccccccccccccccchhHHHHHHHHHHHHHHHHH
Q 004955 436 NDFYNNGLPSNLTGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLM 515 (722)
Q Consensus 436 n~~~n~GLP~~L~~~~~p~l~~Gf~~~qi~~aal~sEl~~LA~PvS~~~~sae~~nqDv~Sma~~saRk~~~~ve~l~~~ 515 (722)
|..+..+|.....-+ + .||+ .--++. .+|.+|+ .+.....+-+++.+
T Consensus 169 ~~~~~~~~~~~~~~~-~---~~~~-----------------~~~~~~--------~~~~~~~----~~~~~~~~~~~~~~ 215 (763)
T PLN02972 169 DEELRKKLTSGVVLD-N---LYGL-----------------LLKVSI--------EEDAVSF----LHGVNNLLGIVWDI 215 (763)
T ss_pred cHHHHHhhhcceeeh-h---hhhh-----------------hhheee--------cchHHHH----HHHHHHHHHHHHHH
Confidence 333333333222110 1 1231 111211 1565655 46677788889999
Q ss_pred HHHHHHHHHHHHHh
Q 004955 516 SSTFLVALCQAIDL 529 (722)
Q Consensus 516 ~A~ell~a~QAidL 529 (722)
+|.|..++.-.++-
T Consensus 216 ~~~~~~~~~~~~~~ 229 (763)
T PLN02972 216 VAWEAAAAFAVLEG 229 (763)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999988877754
No 12
>COG5613 Uncharacterized conserved protein [Function unknown]
Probab=36.19 E-value=62 Score=36.27 Aligned_cols=55 Identities=24% Similarity=0.323 Sum_probs=36.4
Q ss_pred CceeccccCCCCCCCcccc--ch-hhhHHHHHHHhhccccCCCCCCCCCCC-hHHHHHHHHH
Q 004955 109 TDSYGVTTGFGATSHRRTK--QG-GALQKELIRFLNSGIFGNGTESSHTLP-HSATRAAMLV 166 (722)
Q Consensus 109 ~~iYGVnTGfG~~a~~~~~--~~-~~LQ~~Lir~~~aGv~~~g~~~g~~lp-~~~vRA~Mlv 166 (722)
.+.|||||-||...-.+.. ++ -.++.+++...+.++.++|- .|+| +..|-++|+-
T Consensus 10 ~v~sGVn~a~g~p~~~~p~~g~lslq~vs~~lk~~~~sasgtgv---~plPtppAv~s~~~t 68 (400)
T COG5613 10 SVTSGVNTASGTPGITQPETGKLSLQLVSNLLKSMNSSASGTGV---SPLPTPPAVHSLVTT 68 (400)
T ss_pred ccccCccccCCCCcccCcCCCcccHHHHHHHHHHhhccCCCCCC---CCCCCChHHHHHHhH
Confidence 4899999999976544332 22 23346799999999987652 4467 5555555543
No 13
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=28.13 E-value=44 Score=36.07 Aligned_cols=33 Identities=21% Similarity=0.301 Sum_probs=23.4
Q ss_pred hcCCceeccccC-CCCCCCccccchhhhHHHHHHHhh
Q 004955 106 MKGTDSYGVTTG-FGATSHRRTKQGGALQKELIRFLN 141 (722)
Q Consensus 106 ~~g~~iYGVnTG-fG~~a~~~~~~~~~LQ~~Lir~~~ 141 (722)
+.+.||||||+| +|-+.+...+ ++|+.+.+...
T Consensus 77 ~~~~pilgin~G~lGFLt~~~~~---~~~~~~~~~~~ 110 (281)
T COG0061 77 RLDIPVLGINLGHLGFLTDFEPD---ELEKALDALLE 110 (281)
T ss_pred cCCCCEEEEeCCCcccccccCHH---HHHHHHHHHhc
Confidence 356799999999 9999887744 44555444444
No 14
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=27.58 E-value=2.4e+02 Score=34.55 Aligned_cols=27 Identities=19% Similarity=0.357 Sum_probs=19.6
Q ss_pred hccHHHHHHHHHhHhHHHHHHHHHHHh
Q 004955 620 FQKIGAFEDELKTLLPKEVEIARTELE 646 (722)
Q Consensus 620 ~~~I~~f~~el~~~l~~~~~~~R~~f~ 646 (722)
..+|..|+......++...+.....|.
T Consensus 219 P~Ri~~F~~ra~~~fp~a~e~L~~r~~ 245 (683)
T PF08580_consen 219 PMRIEEFQSRAESIFPSACEELEDRYE 245 (683)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 346888888877777777777666665
No 15
>TIGR01226 phe_am_lyase phenylalanine ammonia-lyase. Members of this family are found, so far, in plants and fungi. From phenylalanine, this enzyme yields cinnaminic acid, a precursor of many important plant compounds. This protein shows extensive homology to histidine ammonia-lyase, the first enzyme of a histidine degradation pathway.
Probab=27.13 E-value=1e+03 Score=29.43 Aligned_cols=56 Identities=11% Similarity=0.013 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhhhhcCCCCCCCcchhhccHHHHHHHHHhHhHHHHHHHHHHHhcCC
Q 004955 594 MQKLRQVLVDHALDNGDREKNSTTSIFQKIGAFEDELKTLLPKEVEIARTELESGN 649 (722)
Q Consensus 594 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~~I~~f~~el~~~l~~~~~~~R~~f~~g~ 649 (722)
...+.+.|++.+....-...+.....++.+..|+....+.....+.++|++|+..+
T Consensus 561 ~~~~~~~l~~~l~~~~l~~~~~~~~~~s~~~~~~~~~~~~~~~l~~e~~~~~~~~~ 616 (680)
T TIGR01226 561 NYPLMQKLRQVLVEHALSNGEREKDLLSSFQKIQVFEAELKAVLPPDVRGARAAGD 616 (680)
T ss_pred hHHHHHHHHHHHHHHhhcCCccccchhHHHHHHHHHHHHHHHhCHHHHHHHHHhcc
Confidence 33445788887554332222223345778999999999999999999999999754
Done!