Query 004955
Match_columns 722
No_of_seqs 321 out of 1101
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 10:56:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004955.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004955hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w27_A Phenylalanine ammonia-l 100.0 3E-202 1E-206 1712.1 67.8 694 22-720 18-714 (714)
2 2yii_A Phenylalanine ammonia-l 100.0 2E-195 5E-200 1654.9 64.0 677 28-720 16-702 (705)
3 1y2m_A Phenylalanine ammonia-l 100.0 2E-183 8E-188 1559.0 57.6 655 28-710 25-716 (716)
4 3unv_A ADMH; MIO, lyase; HET: 100.0 2E-148 6E-153 1244.5 47.7 498 56-577 24-532 (547)
5 2nyn_A Phenylalanine/histidine 100.0 1E-146 5E-151 1232.7 45.7 507 59-577 25-547 (565)
6 1gkm_A Histidase, HAL, histidi 100.0 6E-146 2E-150 1219.4 45.7 487 59-578 2-491 (507)
7 2o6y_A Putative histidine ammo 100.0 5E-145 2E-149 1215.2 51.0 494 59-577 10-515 (521)
8 2qve_A Tyrosine aminomutase; M 100.0 5E-145 2E-149 1215.9 49.7 493 59-577 1-508 (526)
9 3l9k_W Dynein intermediate cha 14.3 2.8E+02 0.0096 20.5 4.7 27 86-112 11-37 (38)
10 2qve_A Tyrosine aminomutase; M 11.9 85 0.0029 35.5 2.0 46 658-707 474-519 (526)
No 1
>1w27_A Phenylalanine ammonia-lyase 1; phenylpropanoid metabolism, MIO; HET: MDO; 1.7A {Petroselinum crispum} SCOP: a.127.1.2
Probab=100.00 E-value=2.9e-202 Score=1712.07 Aligned_cols=694 Identities=86% Similarity=1.315 Sum_probs=663.9
Q ss_pred CccccC-CCCCCHHHHHHHhccCcHHHHHHHHhhccCCeEEEcCCCcCHHHHHHHHhhCC--CCeEEeCHHHHHHHHHHH
Q 004955 22 LGLCTG-TDPLNWTVAADSLKGSHLDEVKRMIDEYRRPVVKLGGESLTIGQVTAIAAHDS--GVKVELAEAARAGVKASS 98 (722)
Q Consensus 22 ~~~~~~-~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~l~g~~Lti~~v~avA~~~~--~~~V~l~~~a~~ri~~s~ 98 (722)
.++|++ .|||||++||++|++||+++|++|+++|+.+.|+|+|.+||++||++||++ . +++|+|++++++||++|+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~l~g~~Ltl~dv~aVa~~-~~~~~~v~ls~~a~~rI~~sr 96 (714)
T 1w27_A 18 MDFCMKTEDPLYWGIAAEAMTGSHLDEVKKMVAEYRKPVVKLGGETLTISQVAAISAR-DGSGVTVELSEAARAGVKASS 96 (714)
T ss_dssp -------CCTTSHHHHHHTTCSCHHHHHHHHHHHHTCSEEEECSSCCCHHHHHHHHCC-SCCCCEEEECGGGHHHHHHHH
T ss_pred cccccCCCCCCChHHhhhhccCCHHHHHHHHHHHhcCCeEEECCCCCCHHHHHHHHhc-CCCCCeEeeCHHHHHHHHHHH
Confidence 569987 499999999999999999999999999988999999999999999999972 2 589999999999999999
Q ss_pred HHHHHHHhcCCceeccccCCCCCCCccccchhhhHHHHHHHhhccccCCCCCCCCCCChHHHHHHHHHHHHHhcCCCCcc
Q 004955 99 DWVMDSMMKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGI 178 (722)
Q Consensus 99 ~~l~~~~~~g~~iYGVnTGfG~~a~~~~~~~~~LQ~~Lir~~~aGv~~~g~~~g~~lp~~~vRA~MlvRlNsL~~G~SGV 178 (722)
++|++.+++|++|||||||||+++++++++..+||+||||+|+||++|.|+ +++||+++|||+|++|+|+|++|||||
T Consensus 97 ~~v~~~~~~g~~VYGVnTGFG~la~~~~~~~~~LQ~nLirsHa~Gv~G~~~--~~~lp~~~vRA~MllRlnsL~~G~SGV 174 (714)
T 1w27_A 97 DWVMDSMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGS--DNTLPHSATRAAMLVRINTLLQGYSGI 174 (714)
T ss_dssp HHHHHHHSTTTTSCSCCCSSCTTSCSSSSSCSHHHHHHHHHHCCCCCCSSS--TTBCCHHHHHHHHHHHHHTTTTSCSCC
T ss_pred HHHHHHHhcCCeeccccCCCCCcccccHHHHHHHHHHHHHHHhCCcCCCCC--CCCCCHHHHHHHHHHHHHHHccCCCCC
Confidence 999999999999999999999999999999999999999999999953221 249999999999999999999999999
Q ss_pred cHHHHHHHHHHHhCCCccccCCCCCCCCcCCchHHHHHHHHhccCCCccccCCCCeeeCHHHHHHHCCCCCCCcccCCcc
Q 004955 179 RFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGQVLNPTEAFNLAGVTSGFFELQPKE 258 (722)
Q Consensus 179 r~evle~L~~lLN~~i~P~VP~rGSVGASGDL~PLS~Ia~~L~G~g~~~~~~~~G~~~~a~eAL~~aGl~~~P~~L~pKE 258 (722)
|||++|+|++|||+||+|+||++|||| |||+||||||++|+|||+++++.|+|+++|+.|||+++||+.+|++|+|||
T Consensus 175 r~evve~L~~lLN~gi~P~VP~~GSVG--GDLaPLAhial~LiGeg~~~~v~~~G~~~~a~eAL~~aGl~~~Pl~L~~KE 252 (714)
T 1w27_A 175 RFEILEAITKFLNQNITPCLPLRGTIT--XDLVPLSYIAGLLTGRPNSKAVGPTGVILSPEEAFKLAGVEGGFFELQPKE 252 (714)
T ss_dssp CHHHHHHHHHHHHTTCEECCBSSCCCS--SCHHHHHHHHHHHTTCTTCCEECTTSCEECHHHHHHHHTCSSSCCCCCTTH
T ss_pred CHHHHHHHHHHHhCCCccccCCCCCcc--ccchHHHHHHHHHhCCCcccccccCCccccHHHHHHHcCCCCCCCCCCCcc
Confidence 999999999999999999999999999 999999999999999999877789999999999999999986699999999
Q ss_pred chhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccchhhhhcCCCchHHHHHHHHHHHhcCChhhhhh
Q 004955 259 GLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAA 338 (722)
Q Consensus 259 GLALiNGTa~s~a~aalal~~a~~L~~~a~v~~Als~Eal~G~~~~fd~~ih~~RphpGQ~e~A~~ir~lL~gS~~~~~~ 338 (722)
||||||||++|+|+|++++++|++|+.++++++||++|||+|++++|||++|++||||||+++|++||++|+||+++...
T Consensus 253 GLALiNGTa~~ta~aalal~~a~~L~~~A~v~~Als~Eal~G~~~~fd~~ih~~RpHpGQ~~~A~~ir~lL~gS~l~~~~ 332 (714)
T 1w27_A 253 GLALVNGTAVGSGMASMVLFEANILAVLAEVMSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSAYVKAA 332 (714)
T ss_dssp HHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCGGGGCHHHHHTTCCHHHHHHHHHHHHHHHTCSSCCCC
T ss_pred hhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhhChHHHhhCCChhHHHHHHHHHHHhCccchhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred hhhcccCCCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHhccCCCCccccCCCccccCCCCCCchhHhHHHHHHH
Q 004955 339 QKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRAATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRL 418 (722)
Q Consensus 339 ~~~~~~d~~~~~~QD~YSlR~~PQvlG~~~d~l~~a~~~ie~ElNS~~DNPlI~~~~~~vl~GGNF~g~~va~AmD~l~l 418 (722)
.+.+..|+.++++||||||||+||||||++|+|++++++|++||||+|||||||+++++++|||||||+||++|||++++
T Consensus 333 ~~~~~~~~~~~rvQD~YSlRc~PQV~Ga~~d~l~~a~~~le~ElNS~tDNPlI~~~~g~v~sGGNFhg~pvA~AmD~L~i 412 (714)
T 1w27_A 333 QKLHEMDPLQKPKQDRYALRTSPQWLGPQIEVIRSSTKMIEREINSVNDNPLIDVSRNKAIHGGNFQGTPIGVSMDNTRL 412 (714)
T ss_dssp CSSCSSCCCCSSSCCCHHHHTHHHHHHHHHHHHHHHHHHHHHHTTSCCCSSEEETTTTEEECCCTTCCHHHHHHHHHHHH
T ss_pred ccccccCcccCcCcCcceecchhhhhHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCCceeeCCCccchHHHHHHHHHHH
Confidence 44444566667999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHhhccCCCcccccccccccccccchh
Q 004955 419 AIASIGKLLFAQFSELVNDFYNNGLPSNLTGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLG 498 (722)
Q Consensus 419 Ala~lg~l~~~r~~~Lvn~~~n~GLP~~L~~~~~p~l~~Gf~~~qi~~aal~sEl~~LA~PvS~~~~sae~~nqDv~Sma 498 (722)
|+++||+++|||+++|+||.+|+|||+||+++++||+|||||++||++|||+||||+||||+|+|++|+++|||||||||
T Consensus 413 Ala~lg~lserR~~~Lvdp~~~~GLP~fL~~~~~~glnsGfmi~Q~taAal~sEnk~LA~PaSvds~pts~~qEDhvSmg 492 (714)
T 1w27_A 413 AIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLG 492 (714)
T ss_dssp HHHHHHHHHHHHHHHHTCTTTSTTCCGGGCCSSCGGGCCTTHHHHHHHHHHHHHHHHHTSCSTTCCCCBTTTTBSSCCCH
T ss_pred HHHHHHHHHHHHHHHhcCcccccCCChhhcCCCCCCcccchHHHHHHHHHHHHHHHHhcCCCccCCccccCCcccccccH
Confidence 99999999999999999999999999999976789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhcccCCCCCCCcCCHHHHHHHHhhhh
Q 004955 499 LISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKNTVKNTVSQVAKRVLTMGVNGELHPSRFCEKDLIKVVDREY 578 (722)
Q Consensus 499 ~~saRk~~~~ve~l~~~~A~ell~a~QAidLR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dR~~~~~l~~~~~~~~ 578 (722)
++||||+.+++|++++|+||||+++|||+|||++++++++.++++++++++++++++.+|++++.||+++|+.+++++++
T Consensus 493 ~~aArk~~~~venl~~vlAiELl~a~QAiDlR~~~~~~~~~~~~~~~~~r~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~ 572 (714)
T 1w27_A 493 LISSRKTSEAVEILKLMSTTFLVGLCQAIDLRHLEENLKSTVKNTVSSVAKRVLTMGVNGELHPSRFCEKDLLRVVDREY 572 (714)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCBTTTBCCSSCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccCCCccccccccCHHHHHHHHhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCCchHHHHHHHHHHHHhhhhcCCCCCCCcchhhccHHHHHHHHHhHhHHHHHHHHHHHhcCChhhhhhhhc
Q 004955 579 VFAYIDDPCSASYPLMQKLRQVLVDHALDNGDREKNSTTSIFQKIGAFEDELKTLLPKEVEIARTELESGNAAIANRIKE 658 (722)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~I~~f~~el~~~l~~~~~~~R~~f~~g~~~~~n~il~ 658 (722)
+|+|++|||+.+||+|+|++++|++|++++++.+++..+++|++|..|+++++++++++|+++|++|++|++++|++|++
T Consensus 573 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~r~~f~~g~~~~~~~i~~ 652 (714)
T 1w27_A 573 IFAYIDDPCSATYPLMQKLRQTLVEHALKNGDNERNLSTSIFQKIATFEDELKALLPKEVESARAALESGNPAIPNRIEE 652 (714)
T ss_dssp GGGTTTSTTCTTSHHHHHHHHHHHHHHHTSGGGGGSGGGCSGGGHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCGGGG
T ss_pred HHHhhcCcccccchHHHHHHHHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCccchhhc
Confidence 99999999999999999999999999998877777777889999999999999999999999999999998899999999
Q ss_pred cccchhhHHHHhhhCcccccCccccCCCchHHHHHHHHhcCcchhhHHHhhhhccCCCCCCC
Q 004955 659 CRSYPLYKIVREEIGTSLLTGEKVRSPGEEFDKVFAAMCEGKLIDPMLECLKEWNGAPLPIC 720 (722)
Q Consensus 659 ~rS~pLY~FVR~eLgVpfh~Ge~~~t~G~~~~~i~~ai~~g~~~~~LlecL~~w~g~p~~~~ 720 (722)
|||||||+|||+|||||||+|++++|||+||||||+|||+|+++||||+||++|+|+|+|||
T Consensus 653 ~~s~~lY~fVR~~Lg~~~~~g~~~~~~g~~~~~i~~ai~~g~~~~~l~~~~~~~~~~~~~~~ 714 (714)
T 1w27_A 653 CRSYPLYKFVRKELGTEYLTGEKVTSPGEEFEKVFIAMSKGEIIDPLLECLESWNGAPLPIC 714 (714)
T ss_dssp STTHHHHHHHHTTSCCCCCCTTSSCCHHHHHHHHHHHHHTTTTHHHHHHTTTTCCSSCCCCC
T ss_pred CCchhHHHHHHHHcCCCcccCCCCCCCchhHHHHHHHHHCCccHHHHHHHHhhhcCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999998
No 2
>2yii_A Phenylalanine ammonia-lyase; HET: MDO; 2.18A {Taxus wallichiana var} PDB: 3nz4_A*
Probab=100.00 E-value=1.6e-195 Score=1654.88 Aligned_cols=677 Identities=45% Similarity=0.765 Sum_probs=618.3
Q ss_pred CCCCCHHHHHHHhccCcHHHHHHHHhhc-cCCeEEEcCCC-cCHHHHHHHHhhCCCCeEEeC-HHHHHHHHHHHHHHHHH
Q 004955 28 TDPLNWTVAADSLKGSHLDEVKRMIDEY-RRPVVKLGGES-LTIGQVTAIAAHDSGVKVELA-EAARAGVKASSDWVMDS 104 (722)
Q Consensus 28 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~-~~~~v~l~g~~-Lti~~v~avA~~~~~~~V~l~-~~a~~ri~~s~~~l~~~ 104 (722)
.|||||++||++ ++|+++|++|+++| +.+.|+|+|.+ ||++||++||++ ++++|+|+ +++++||++|+++|++.
T Consensus 16 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~l~g~~~Ltl~dv~aVa~~-~~~~v~ls~~~a~~rI~~sr~~v~~~ 92 (705)
T 2yii_A 16 PRGSHMGFAVES--RSHVKDILGLINAFNEVKKITVDGTTPITVAHVAALARR-HDVKVALEAEQCRARVETCSSWVQRK 92 (705)
T ss_dssp ---------------CHHHHHHHHHHHHHHCCEEEESSSSCCCHHHHHHHHHC-TTCEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHhhc--cChHHHHHHHHHHhhcCCeEEECCCCCCCHHHHHHHHhc-CCCeEeeChHHHHHHHHHHHHHHHHH
Confidence 399999999999 99999999999999 67889999999 999999999963 46999999 99999999999999999
Q ss_pred HhcCCceeccccCCCCCCCccccchhhhHHHHHHHhhccccCCCCCC-CCCCChHHHHHHHHHHHHHhcCCCCcccHHHH
Q 004955 105 MMKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNSGIFGNGTES-SHTLPHSATRAAMLVRVNTLLQGYSGIRFEIL 183 (722)
Q Consensus 105 ~~~g~~iYGVnTGfG~~a~~~~~~~~~LQ~~Lir~~~aGv~~~g~~~-g~~lp~~~vRA~MlvRlNsL~~G~SGVr~evl 183 (722)
+++|++|||||||||+++++++++..+||+||||+|+||+++.|++. +++||+++|||+|++|+|+|++||||||||++
T Consensus 93 ~~~g~~VYGVnTGFG~la~~~~~~~~~LQ~nLirsHa~GvG~~G~~~~~~~lp~~~vRa~MllRlnsL~~G~SGVr~evv 172 (705)
T 2yii_A 93 AEDGADIYGVTTGFGACSSRRTNRLSELQESLIRCLLAGVFTKGCAPSVDELPATATRSAMLLRLNSFTYGCSGIRWEVM 172 (705)
T ss_dssp HHTTCCCTTTSBCCGGGTTCBCSCHHHHHHHHHHHHCCCCCCC-----CCCBCHHHHHHHHHHHHHHHTTSCSCCCHHHH
T ss_pred HhcCCeeeeeecCCCccccccHHHHHHHHHHHHHHHhcCccCCCCccCCCCCCHHHHHHHHHHHHHHHccCCCCCCHHHH
Confidence 99999999999999999999999999999999999999998544211 28999999999999999999999999999999
Q ss_pred HHHHHHHhCCCccccCCCCCCCCcCCchHHHHHHHHhccCCCccccCCCCeeeCHHHHHHHCCCCCCCcccCCccchhhc
Q 004955 184 ETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGQVLNPTEAFNLAGVTSGFFELQPKEGLALV 263 (722)
Q Consensus 184 e~L~~lLN~~i~P~VP~rGSVGASGDL~PLS~Ia~~L~G~g~~~~~~~~G~~~~a~eAL~~aGl~~~P~~L~pKEGLALi 263 (722)
|+|++|||+||+|+||++||| ||||+||||||++|+|||+++++.|+|+++|+.|||+++||+ |++|+||||||||
T Consensus 173 e~L~~lLN~~I~P~VP~~GSV--SGDLaPLAhial~LiGeG~v~~~~~~G~~~~a~eAL~~aGl~--Pl~L~~KEGLALi 248 (705)
T 2yii_A 173 EALEKLLNSNVSPKVPLRGSV--SXDLIPLAYIAGLLIGKPSVIARIGDDVEVPAPEALSRVGLR--PFKLQAKEGLALV 248 (705)
T ss_dssp HHHHHHHHTTEEECBCSCCCC--SSCHHHHHHHHHHHTTCTTCEEEESSSCEEEHHHHHHHTTCC--CCCCCTTHHHHHH
T ss_pred HHHHHHHhCCCccccCCCCCc--ccchhHHHHHHHHHhCCCCeeeeccCCEEeeHHHHHHHcCCC--CccCCcchHHHHH
Confidence 999999999999999999999 899999999999999999988777999999999999999999 9999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccchhhhhcCCCchHHHHHHHHHHHhcCChhhhhhhhhcc
Q 004955 264 NGTAVGSGLAATVLFEANILAIMSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAQKLHE 343 (722)
Q Consensus 264 NGTa~s~a~aalal~~a~~L~~~a~v~~Als~Eal~G~~~~fd~~ih~~RphpGQ~e~A~~ir~lL~gS~~~~~~~~~~~ 343 (722)
|||++|+|+|++++++|++|+.++++++||++|||+|++++|||++|++||||||+++|++||++|+||+++...++.++
T Consensus 249 NGTa~~ta~aalal~~a~~L~~~A~~~~Als~Eal~G~~~~fd~~ih~~RpHpGQ~~~A~~ir~lL~gS~l~~~~~~~~~ 328 (705)
T 2yii_A 249 NGTSFATAVASTVMYDANVLLLLVETLCGMFCEVIFGREEFAHPLIHKVKPHPGQIESAELLEWLLRSSPFQELSREYYS 328 (705)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCGGGGCHHHHHTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCchHHhhHHHHhcCCChhHHHHHHHHHHHhCcCcchhhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999877654445
Q ss_pred cCCCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHhccCCCCccccCCCccccCCCCCCchhHhHHHHHHHHHHHH
Q 004955 344 IDPLQKPKQDRYALRTSPQWLGPQIEVIRAATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASI 423 (722)
Q Consensus 344 ~d~~~~~~QD~YSlR~~PQvlG~~~d~l~~a~~~ie~ElNS~~DNPlI~~~~~~vl~GGNF~g~~va~AmD~l~lAla~l 423 (722)
.|+.++++||||||||+||||||++|+|++++++|++||||+|||||||+++++++|||||||+||+++||++++|+++|
T Consensus 329 ~~~~~~rvQDpYSlRc~PQV~Ga~~d~l~~a~~~le~ElNS~tDNPlI~~~~g~v~sGGNFhg~pvalamD~L~iAla~l 408 (705)
T 2yii_A 329 IDKLKKPKQDRYALRSSPQWLAPLVQTIRDATTTVETEVNSANDNPIIDHANDRALHGANFQGSAVGFYMDYVRIAVAGL 408 (705)
T ss_dssp TTGGGSCSSCCHHHHTHHHHHHHHHHHHHHHHHHHHHHHTSCCCSSEEEGGGTEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cccccCcCcCCceeechhhhhHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCCccccCCCccchhHHHHHHHHHHHHHHH
Confidence 55556799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHhhccCCCcccccccccccccccchhHHHHH
Q 004955 424 GKLLFAQFSELVNDFYNNGLPSNLTGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSR 503 (722)
Q Consensus 424 g~l~~~r~~~Lvn~~~n~GLP~~L~~~~~p~l~~Gf~~~qi~~aal~sEl~~LA~PvS~~~~sae~~nqDv~Sma~~saR 503 (722)
|+++|||+++|+||.+|+|||+||+++++||+|||||++||++|||++|||+||||+|+|++|+++|||||||||++|||
T Consensus 409 g~lserR~~~Lvdp~~n~GLP~fL~~~~~~GlnsGfmi~Q~taAal~sEnk~LA~PaSvds~pts~~qED~vSmg~~aAr 488 (705)
T 2yii_A 409 GKLLFAQFTELMIEYYSNGLPGNLSLGPDLSVDYGLKGLDIAMAAYSSELQYLANPVTTHVHSAEQHNQDINSLALISAR 488 (705)
T ss_dssp HHHHHHHHHHHHCTTTTTTCCGGGCCCSSGGGCCTTHHHHHHHHHHHHHHHHHTSCSGGGCCCBTTTTBSSCCCHHHHHH
T ss_pred HHHHHHHHHHhcCcccccCCChhhcCCCCCCcccchHHHHHHHHHHHHHHHHhcCCCccCCcccccCcccccccHHHHHH
Confidence 99999999999999998999999997678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhcccCCCCCCCcCCHHHHHHHHhhhhhhhhc
Q 004955 504 KTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKNTVKNTVSQVAKRVLTMGVNGELHPSRFCEKDLIKVVDREYVFAYI 583 (722)
Q Consensus 504 k~~~~ve~l~~~~A~ell~a~QAidLR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dR~~~~~l~~~~~~~~~~~~~ 583 (722)
|+.+++|++++|+||||+++|||+|||++++++.+.+++++.++++++ | ++++ |++|+.++++++++|+|+
T Consensus 489 k~~~~venl~~vlAiELl~a~QAidlR~~~~~~~~~~~~~~~~~~~~~------~-l~~~--~~~~~~~~~~~~~~~~~~ 559 (705)
T 2yii_A 489 KTEEALDILKLMIASHLTAMCQAVDLRQLEEALVKVVENVVSTLADEC------G-LPND--TKARLLYVAKAVPVYTYL 559 (705)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------T-CCHH--HHHHHHHHHHHSCGGGTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHh------C-CChh--HHHHHHHHHhhhHHHHHh
Confidence 999999999999999999999999999999999999999999999886 2 6666 899999999999999999
Q ss_pred cCCCCCchHHHHHHHHHHHHhhhhcCCCCCCCcchhhccHHHHHHHHHhHhHHHHHHHHHHHh-cCChhhhh-----hhh
Q 004955 584 DDPCSASYPLMQKLRQVLVDHALDNGDREKNSTTSIFQKIGAFEDELKTLLPKEVEIARTELE-SGNAAIAN-----RIK 657 (722)
Q Consensus 584 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~I~~f~~el~~~l~~~~~~~R~~f~-~g~~~~~n-----~il 657 (722)
||||+.+||+|+|++++|+||+++++++++...+++|.+|..|+++++++++++|+++|++|+ +|++++|| ||+
T Consensus 560 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~r~~~~~~~~~~~~n~~~~~ri~ 639 (705)
T 2yii_A 560 ESPCDPTLPLLLGLKQSCFDTILALHKKDGIETDTLVDRLAEFEKRLSDRLENEMTAVRVLYEKKGHKTADNNDALVRIQ 639 (705)
T ss_dssp TCTTCTTSHHHHHHHHHHHHHHHHTTC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------CGGG
T ss_pred hccccccccHHHHHHHHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccchhhhhh
Confidence 999999999999999999999999887777778889999999999999999999999999999 89889999 999
Q ss_pred ccccchhhHHHHhhhCcccccCccccCCCchHHHHHHHHhcCcchhhHHHhhhhccCCCCCCC
Q 004955 658 ECRSYPLYKIVREEIGTSLLTGEKVRSPGEEFDKVFAAMCEGKLIDPMLECLKEWNGAPLPIC 720 (722)
Q Consensus 658 ~~rS~pLY~FVR~eLgVpfh~Ge~~~t~G~~~~~i~~ai~~g~~~~~LlecL~~w~g~p~~~~ 720 (722)
+|||||||+|||+|||||||+|++++|||+||+|||+|||+|++++|||+||++|+|+|+||.
T Consensus 640 ~~~S~~lY~FVR~eLG~p~l~G~~~~~~g~~~~~v~~ai~~g~~~~~l~~~~~~~~~~~~~~~ 702 (705)
T 2yii_A 640 GSKFLPFYRFVREELDTGVMSARREQTPQEDVQKVFDAIADGRITVPLLHCLQGFLGQPNGCA 702 (705)
T ss_dssp GSTTHHHHHHHHTTTTCCCCSTTCCSCHHHHHHHHHHHHHTTTTHHHHHHHTTTCC-------
T ss_pred ccCchhHHHHHHHHcCCCccCCCCCCCCCccHHHHHHHHHCCccHHHHHHHHHhhcCCCcccc
Confidence 999999999999999999999999999999999999999999999999999999999999985
No 3
>1y2m_A Phenylalanine ammonia-lyase; alpha helices; HET: MSE; 1.60A {Rhodosporidium toruloides} PDB: 1t6j_A* 1t6p_A*
Probab=100.00 E-value=2.4e-183 Score=1558.99 Aligned_cols=655 Identities=36% Similarity=0.556 Sum_probs=589.7
Q ss_pred CCCCCHHHHHHHhccCcHHHH---HHHHhhccC-CeEEEcCCCcCHHHHHHHHhhCCCCeEEeC--HHHHHHHHHHHHHH
Q 004955 28 TDPLNWTVAADSLKGSHLDEV---KRMIDEYRR-PVVKLGGESLTIGQVTAIAAHDSGVKVELA--EAARAGVKASSDWV 101 (722)
Q Consensus 28 ~~~~~~~~~~~~~~~~h~~~~---~~~~~~~~~-~~v~l~g~~Lti~~v~avA~~~~~~~V~l~--~~a~~ri~~s~~~l 101 (722)
.++++|++||+.++++|+|+| ++|++ |++ +.|+|+|.+||++||++||+ ++.+|+++ |++++||++|+++|
T Consensus 25 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~-~~~~~~v~l~g~~Ltl~dv~aVa~--~~~~v~l~~~~~a~~ri~~s~~~v 101 (716)
T 1y2m_A 25 GASTNLAVAGSHLPTTQVTQVDIVEKMLA-APTDSTLELDGYSLNLGDVVSAAR--KGRPVRVKDSDEIRSKIDKSVEFL 101 (716)
T ss_dssp -CCCCHHHHCCSSCCTTCCHHHHHHHHHT-SCSSSCEEECSSCCCHHHHHHHHH--SCCCEEECCCHHHHHHHHHHHHHH
T ss_pred CCCCCchhhhcccCCcHHHHHHHHHHHHh-hccCCeEEECCCCCCHHHHHHHHc--CCCeeeeCCCHHHHHHHHHHHHHH
Confidence 489999999999999999999 99999 876 56999999999999999997 46888888 99999999999999
Q ss_pred HHHHhcCCceeccccCCCCCCCccccchhhhHHHHHHHhhccccCCCC-------CCCCCCChHHHHHHHHHHHHHhcCC
Q 004955 102 MDSMMKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNSGIFGNGT-------ESSHTLPHSATRAAMLVRVNTLLQG 174 (722)
Q Consensus 102 ~~~~~~g~~iYGVnTGfG~~a~~~~~~~~~LQ~~Lir~~~aGv~~~g~-------~~g~~lp~~~vRA~MlvRlNsL~~G 174 (722)
++.+++ +|||||||||+++++++++..+||+||||+|+||+|..+. ..+.+||+++|||+|++|+|+|++|
T Consensus 102 ~~~~~~--~vYGVnTGfG~~a~~~i~~~~~LQ~nLirsHa~GvG~~~~~~~~~~~~~~~~lp~~~vRa~MllRlnsL~~G 179 (716)
T 1y2m_A 102 RSQLSM--SVYGVTTGFGGSADTRTEDAISLQKALLEHQLCGVLPSSFDSFRLGRGLENSLPLEVVRGAMTIRVNSLTRG 179 (716)
T ss_dssp C-----------------------CHHHHHHHHHHHHHHCCCCCCSCGGGCBTTBSCTTBCCHHHHHHHHHHHHHHHTTS
T ss_pred HHHhhc--CCCccccCCCcccCcchhHHHHHHHHHHHHHhcCCCCCccccccccccccCCCCHHHHHHHHHHHHHHHccC
Confidence 999887 9999999999999999999999999999999999974100 0011899999999999999999999
Q ss_pred CCcccHHHHHHHHHHHhCCCccccCCCCCCCCcCCchHHHHHHHHhccCCCcccc---CCCCeeeCHHHHHHHCCCCCCC
Q 004955 175 YSGIRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAV---GPNGQVLNPTEAFNLAGVTSGF 251 (722)
Q Consensus 175 ~SGVr~evle~L~~lLN~~i~P~VP~rGSVGASGDL~PLS~Ia~~L~G~g~~~~~---~~~G~~~~a~eAL~~aGl~~~P 251 (722)
|||||||++|+|++|||+||+|+||++|||||||||+||||||++|+|||+++.. ..+|+++|+.|||+++||+ |
T Consensus 180 ~SGVr~evle~L~~lLN~~i~P~VP~~GSVGASGDLaPLAhial~LiGeg~v~~~~~~~~~G~~~~a~eAL~~aGl~--P 257 (716)
T 1y2m_A 180 HSAVRLVVLEALTNFLNHGITPIVPLRGTISASGDLSPLSYIAAAISGHPDSKVHVVHEGKEKILYAREAMALFNLE--P 257 (716)
T ss_dssp SSCCCHHHHHHHHHHHHTTCEECCBSSCCCC-CBSHHHHHHHHHHHTTCTTCEEEEEETTEEEEEEHHHHHHHTTCC--C
T ss_pred CCCCCHHHHHHHHHHHhCCCeeccCCCCCCCccccHHHHHHHHHHHcCCCCeEEecccCCCCeEeeHHHHHHHcCCC--C
Confidence 9999999999999999999999999999999999999999999999999998631 1269999999999999999 9
Q ss_pred cccCCccchhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccchhhhhc-CCCchHHHHHHHHHHHhc
Q 004955 252 FELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEVMNGKPEFTDHLTHKL-KHHPGQIEAAAIMEHILD 330 (722)
Q Consensus 252 ~~L~pKEGLALiNGTa~s~a~aalal~~a~~L~~~a~v~~Als~Eal~G~~~~fd~~ih~~-RphpGQ~e~A~~ir~lL~ 330 (722)
++|+|||||||||||++|+|+|+++++++++|+.++++++||++|||+|++++|||++|++ ||||||+++|++||++|+
T Consensus 258 l~L~~KEGLALiNGTa~~ta~aalal~~a~~L~~~A~~~~Als~Eal~G~~~~fd~~ih~~~RpHpGQ~~~A~~ir~lL~ 337 (716)
T 1y2m_A 258 VVLGPKEGLGLVNGTAVSASMATLALHDAHMLSLLSQSLTAMTVEAMVGHAGSFHPFLHDVTRPHPTQIEVAGNIRKLLE 337 (716)
T ss_dssp CCCCTTHHHHHHSBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBGGGGCGGGTTTTSCCHHHHHHHHHHHHHHT
T ss_pred ccCCCchhHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhCHHHHhccCCCchHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred CChhhhhhhhhcccCC-CCCCCCCcccccccccchhhHHHHHHHHHHHHHHHH-hccCCCCccccCCCccccCCCCCCch
Q 004955 331 GSSYVKAAQKLHEIDP-LQKPKQDRYALRTSPQWLGPQIEVIRAATKMIEREI-NSVNDNPLIDVSRNKALHGGNFQGTP 408 (722)
Q Consensus 331 gS~~~~~~~~~~~~d~-~~~~~QD~YSlR~~PQvlG~~~d~l~~a~~~ie~El-NS~~DNPlI~~~~~~vl~GGNF~g~~ 408 (722)
||+++...++.++.|+ .++++||||||||+||||||++|+|++++++|++|| ||+|||||||+++++++|||||||+|
T Consensus 338 gS~l~~~~~~~~~~~~~~~~~vQD~YSlRc~PQv~Ga~~d~l~~a~~~le~El~NS~tDNPlI~~~~g~v~sGGNFhg~~ 417 (716)
T 1y2m_A 338 GSRFAVHHEEEVKVKDDEGILRQDRYPLRTSPQWLGPLVSDLIHAHAVLTIEAGQSTTDNPLIDVENKTSHHGGNFQAAA 417 (716)
T ss_dssp TCSSSBCHHHHC----CCCCCCSCCHHHHTHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSSEEETTTTEEECCCTTCTHH
T ss_pred cCcchhhhhhhcccccccCCcCcCccchhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCeeeCCCCeeecCCCccchH
Confidence 9999987654444442 356999999999999999999999999999999999 99999999999999999999999999
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHhhccCCCcccccccc
Q 004955 409 IGVSMDNTRLAIASIGKLLFAQFSELVNDFYNNGLPSNLTGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAE 488 (722)
Q Consensus 409 va~AmD~l~lAla~lg~l~~~r~~~Lvn~~~n~GLP~~L~~~~~p~l~~Gf~~~qi~~aal~sEl~~LA~PvS~~~~sae 488 (722)
|+++||++++|+++||+++|||+++|+||.+|+|||+||+++ +||+||||||+||++|||++||++||||+|+|++|++
T Consensus 418 va~amD~l~iAla~lg~lserR~~~Lvnp~~~~GLP~fL~~~-~~glnsG~m~~q~taAal~sE~k~LA~PaSvds~pts 496 (716)
T 1y2m_A 418 VANTMEKTRLGLAQIGKLNFTQLTEMLNAGMNRGLPSCLAAE-DPSLSYHCKGLDIAAAAYTSELGHLANPVTTHVQPAE 496 (716)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCTTTSTTCCGGGCSS-CGGGCCTTHHHHHHHHHHHHHHHHHTSCSGGGCCCBT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCChhhCCC-CCCcCcchHHHHHHHHHHHHHHHHhcCCCcccccccc
Confidence 999999999999999999999999999999999999999874 7999999999999999999999999999999999999
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhcccCCCCCCCcCCHH
Q 004955 489 QHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKNTVKNTVSQVAKRVLTMGVNGELHPSRFCEK 568 (722)
Q Consensus 489 ~~nqDv~Sma~~saRk~~~~ve~l~~~~A~ell~a~QAidLR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dR~~~~ 568 (722)
+|||||||||++||||+.+++|++++|+||||+++|||+|||+++++|...+++.+.++.++++. .||+++
T Consensus 497 ~~~ED~vSmg~~aArk~~~~venl~~vlAiEll~a~QAidlR~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~ 567 (716)
T 1y2m_A 497 MANQAVNSLALISARRTTESNDVLSLLLATHLYCVLQAIDLRAIEFEFKKQFGPAIVSLIDQHFG---------SAMTGS 567 (716)
T ss_dssp TTTBSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---------TTTTTS
T ss_pred cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh---------ccCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999874 578999
Q ss_pred HHH-HHHhhhhhhhhccC--CCCCchHHHHH-------HHHHHHHhhhhcCCCCCCCcchhhccHHHHHHHHHhHhHHHH
Q 004955 569 DLI-KVVDREYVFAYIDD--PCSASYPLMQK-------LRQVLVDHALDNGDREKNSTTSIFQKIGAFEDELKTLLPKEV 638 (722)
Q Consensus 569 ~l~-~~~~~~~~~~~~~~--~~~~~~~~~~~-------~~~~l~~~~l~~~~~~~~~~~~~~~~I~~f~~el~~~l~~~~ 638 (722)
|+. ++.+ ++|.|++| +|+.+||+|+| ++++|++|+ +++ +++|++|..|+++++++|+++|
T Consensus 568 ~l~~~~~~--~~~~~~~~~~~~t~~~~l~~r~~~~~~~~~~~l~~~~-~~~-------~~~~~~i~~f~~~l~~~l~~~~ 637 (716)
T 1y2m_A 568 NLRDELVE--KVNKTLAKRLEQTNSYDLVPRWHDAFSFAAGTVVEVL-SST-------SLSLAAVNAWKVAAAESAISLT 637 (716)
T ss_dssp SHHHHHHH--HHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHT-TTS-------CCBHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HHHHHHHhhhcccCCCChHHHHHHHHHHHHHHHHHHH-hcc-------ccHHHHHHHHHHHHHHHHHHHH
Confidence 999 8886 56888877 67799999997 789999986 321 5679999999999999999999
Q ss_pred HHHHHHHhcC---ChhhhhhhhccccchhhHHHHhhhCcccccC-----ccccCCCchHHHHHHHHhcCcchhhHHHhhh
Q 004955 639 EIARTELESG---NAAIANRIKECRSYPLYKIVREEIGTSLLTG-----EKVRSPGEEFDKVFAAMCEGKLIDPMLECLK 710 (722)
Q Consensus 639 ~~~R~~f~~g---~~~~~n~il~~rS~pLY~FVR~eLgVpfh~G-----e~~~t~G~~~~~i~~ai~~g~~~~~LlecL~ 710 (722)
+++|++|++| .++++++ ++|||||||+|||+|||||||+| ++++|||+||+|||+|||+|++++|||+||+
T Consensus 638 ~~~R~~f~~~~~~~~~~~~~-lg~~S~plY~fVR~eLg~~~~~G~~~~g~~~~t~g~~~~~v~~ai~~g~~~~~~~~~~~ 716 (716)
T 1y2m_A 638 RQVRETFWSAASTSSPALSY-LSPRTQILYAFVREELGVKARRGDVFLGKQEVTIGSNVSKIYEAIKSGRINNVLLKMLA 716 (716)
T ss_dssp HHHHHHHHHSCGGGCGGGGT-SCTTHHHHHHHHHTTSCCCCCCCHHHHTSCCSCHHHHHHHHHHHHHTSTTHHHHHHHC-
T ss_pred HHHHHHHhcCCCCCccchhh-hcccchHHHHHHHHHcCCCccccccccCCCCCCCcccHHHHHHHHHcCccHHHHHHhhC
Confidence 9999999988 5689996 59999999999999999999996 8899999999999999999999999999985
No 4
>3unv_A ADMH; MIO, lyase; HET: KWS SFE PHE; 1.54A {Pantoea agglomerans}
Probab=100.00 E-value=1.7e-148 Score=1244.52 Aligned_cols=498 Identities=26% Similarity=0.409 Sum_probs=473.6
Q ss_pred cCCeEEEcCCCcCHHHHHHHHhhCCCCeEEeCHHHHHHHHHHHHHHHHHHhcCCceeccccCCCCCCCccc--cchhhhH
Q 004955 56 RRPVVKLGGESLTIGQVTAIAAHDSGVKVELAEAARAGVKASSDWVMDSMMKGTDSYGVTTGFGATSHRRT--KQGGALQ 133 (722)
Q Consensus 56 ~~~~v~l~g~~Lti~~v~avA~~~~~~~V~l~~~a~~ri~~s~~~l~~~~~~g~~iYGVnTGfG~~a~~~~--~~~~~LQ 133 (722)
|.+.|+|+|.+||++||++||+ ++++|+|||++++||++|+++|++.+++|++|||||||||+++++++ ++..+||
T Consensus 24 ~~~~v~l~g~~Ltl~~v~~va~--~~~~v~ls~~a~~ri~~sr~~v~~~~~~g~~vYGvnTGfG~~a~~~i~~~~~~~LQ 101 (547)
T 3unv_A 24 RTSFHISSGKDISLEEIARAAR--DHQPVTLHDEVVNRVTRSRSILESMVSDERVIYGVNTSMGGFVNYIVPIAKASELQ 101 (547)
T ss_dssp --CEEECTTCCCCHHHHHHHHH--HTCCEEECHHHHHHHHHHHHHHHHHHHTTCCCBTTTBCCGGGTTCBCCGGGHHHHH
T ss_pred cCceEEEcCCCCCHHHHHHHHh--CCCccccCHHHHHHHHHHHHHHHHHHhcCCceeceecCCCCccCCccCHHHHHHHH
Confidence 5678999999999999999998 37899999999999999999999999999999999999999999986 6889999
Q ss_pred HHHHHHhhccccCCCCCCCCCCChHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHhCCCccccCCCCCCCCcCCchHH
Q 004955 134 KELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILETITKFLNHNITPCLPLRGTITASGDLVPL 213 (722)
Q Consensus 134 ~~Lir~~~aGv~~~g~~~g~~lp~~~vRA~MlvRlNsL~~G~SGVr~evle~L~~lLN~~i~P~VP~rGSVGASGDL~PL 213 (722)
+||||+|+||+| ++||+++|||+|++|+|+|++|||||||+++|+|++|||+||+|+||++||||| ||+||
T Consensus 102 ~nLirsHa~GvG-------~~l~~~~vRa~mllRlnsL~~G~SGVr~evve~L~~lLN~~i~P~VP~~GSVGA--DLaPL 172 (547)
T 3unv_A 102 NNLINAVATNVG-------KYFDDTTVRATMLARIVSLSRGNSAISIVNFKKLIEIYNQGIVPCIPEKGSLGX--DLGPL 172 (547)
T ss_dssp HHHHHHTCCCEE-------EECCHHHHHHHHHHHHHHHHTSCSCCCHHHHHHHHHHHHTTCEECCEEECCCSS--CHHHH
T ss_pred HHHHHHHhcCCC-------CCCCHHHHHHHHHHHHHHHccCCCCcCHHHHHHHHHHHhCCCcccCCCCCCCCc--cchHH
Confidence 999999999995 899999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHhccCCCccccCCCCeeeCHHHHHHHCCCCCCCcccCCccchhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004955 214 SYIAGLLTGRPNSKAVGPNGQVLNPTEAFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAI 293 (722)
Q Consensus 214 S~Ia~~L~G~g~~~~~~~~G~~~~a~eAL~~aGl~~~P~~L~pKEGLALiNGTa~s~a~aalal~~a~~L~~~a~v~~Al 293 (722)
||||++|+|||+++ |+|+++|+.|||+++||+ |++|+|||||||||||++|+|+|+++++++++|++++++++||
T Consensus 173 ahial~LiGeg~v~---~~G~~~~a~eaL~~aGl~--Pl~L~~KEGLALiNGT~~~ta~a~lal~~a~~L~~~a~~~~Al 247 (547)
T 3unv_A 173 AAIALVCTGQWKAR---YQGEQMSGAMALEKAGIS--PMELSFKEGLALINGTSAMVGLGVLLYDEVKRLFDTYLTVTSL 247 (547)
T ss_dssp HHHHHHHTTCSEEE---ETTEEEEHHHHHHHHTCC--CCCCCTTHHHHHHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCceE---ECCEEeeHHHHHHHcCCC--CccCCcchHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999875 799999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCccccchhhhhcCCCchHHHHHHHHHHHhcCChhhhhhhhh-----cccCC----CCCCCCCcccccccccch
Q 004955 294 FAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAQKL-----HEIDP----LQKPKQDRYALRTSPQWL 364 (722)
Q Consensus 294 s~Eal~G~~~~fd~~ih~~RphpGQ~e~A~~ir~lL~gS~~~~~~~~~-----~~~d~----~~~~~QD~YSlR~~PQvl 364 (722)
++|+|+|++++|||++|++||||||+++|++||++|+||+++...+.. ++.++ ..+++||||||||+||||
T Consensus 248 s~Eal~G~~~~fd~~ih~~Rph~GQ~~~A~~ir~lL~gS~l~~~~~~~r~~~~~~~~~~~~~~~~~vQD~YSlRc~PQv~ 327 (547)
T 3unv_A 248 SIEGLHGKTKPFEPAVHRMKPHQGQLEVATTIWETLADSSLAVNEHEVEKLIAEEMDGLVKASNHQIEDAYSIRCTPQIL 327 (547)
T ss_dssp HHHHTTCBSGGGCHHHHTTSCCHHHHHHHHHHHHHTTTCSSSBCHHHHHHHHHHHCSSSCCCCSCCSSCCHHHHTHHHHH
T ss_pred HHHHHcCCchhcChHHHhhCCCchHHHHHHHHHHHhcCCcccccccccccccccccccccccccCcCcCCccccchhHHh
Confidence 999999999999999999999999999999999999999998764321 11222 235799999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhccCCCCccccCCCccccCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 004955 365 GPQIEVIRAATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLLFAQFSELVNDFYNNGLP 444 (722)
Q Consensus 365 G~~~d~l~~a~~~ie~ElNS~~DNPlI~~~~~~vl~GGNF~g~~va~AmD~l~lAla~lg~l~~~r~~~Lvn~~~n~GLP 444 (722)
||++|+|++++++|++||||+|||||||+++++++|||||||+||+++||++++|+++||+++|||+.+|+||.+|+|||
T Consensus 328 Ga~~d~l~~a~~~le~ElNS~tDNPli~~~~g~v~sgGNFhg~pva~amD~l~iAla~lg~iserR~~~Lvnp~~s~GLP 407 (547)
T 3unv_A 328 GPVADTLKNIKQTLTNELNSSNDNPLIDQTTEEVFHNGHFHGQYVSMAMDHLNIALVTMMNLANRRIDRFMDKSNSNGLP 407 (547)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCCSSEEETTTTEEECCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHccCCCCCceeCCCCceecCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCC
Confidence 99999999999999999999999999999989999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCccccchHHHHHHHHHHHHHhhccCCCcccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004955 445 SNLTGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALC 524 (722)
Q Consensus 445 ~~L~~~~~p~l~~Gf~~~qi~~aal~sEl~~LA~PvS~~~~sae~~nqDv~Sma~~saRk~~~~ve~l~~~~A~ell~a~ 524 (722)
+||++ ++||+|||||++||++|||++|||+||+|+|+|++|+++|||||||||++||||+.+++|++++|+||||+++|
T Consensus 408 ~fL~~-~~~glnsGfmi~Q~taaal~sE~k~La~PaSvds~pts~~qED~vSmg~~aArk~~~~ven~~~vlAiEll~a~ 486 (547)
T 3unv_A 408 PFLCA-ENAGLRLGLMGGQFMTASITAESRASCMPMSIQSLSTTGDFQDIVSFGLVAARRVREQLKNLKYVFSFELLCAC 486 (547)
T ss_dssp GGGCC-SSBTTBCTTTTHHHHHHHHHHHHHHTCCCSTTCCCCBTTTTBCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcC-CCCCcccccHHHHHHHHHHHHHHHHhcCCCccCCccccCcchhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99985 37999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhhhhHHHHHHHHHHHHHhhcccCCCCCCCcCCHHHHHHHHhhh
Q 004955 525 QAIDLRHLEENLKNTVKNTVSQVAKRVLTMGVNGELHPSRFCEKDLIKVVDRE 577 (722)
Q Consensus 525 QAidLR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dR~~~~~l~~~~~~~ 577 (722)
||+|||. +.++++.++++++.+|+.+++++ +||++.+||.++.+..
T Consensus 487 QAidlr~-~~~~s~~~~~~~~~vR~~Vp~~~------~DR~l~~dI~~~~~~i 532 (547)
T 3unv_A 487 QAVDIRG-TAGLSKRTRALYDKTRTLVPYLE------EDKTISDYIESIAQTV 532 (547)
T ss_dssp HHHHHHC-STTCCHHHHHHHHHHHTTSCCCS------SCCCCHHHHHHHHHHT
T ss_pred HHHHhhc-ccCCCHHHHHHHHHHHHhCCCcc------CCCCChHHHHHHHHHH
Confidence 9999996 56889999999999999998755 6999999999998765
No 5
>2nyn_A Phenylalanine/histidine ammonia-lyase; methylidene imidazolone prosthetic group; HET: MDO; 1.90A {Anabaena variabilis} PDB: 3czo_A* 2nyf_A*
Probab=100.00 E-value=1.5e-146 Score=1232.73 Aligned_cols=507 Identities=35% Similarity=0.505 Sum_probs=456.5
Q ss_pred eEEEcCCCcCHHHHHHHHhhCCCCeEEeCHHHHHHHHHHHHHHHHHHhcCCceeccccCCCCCCCccc--cchhhhHHHH
Q 004955 59 VVKLGGESLTIGQVTAIAAHDSGVKVELAEAARAGVKASSDWVMDSMMKGTDSYGVTTGFGATSHRRT--KQGGALQKEL 136 (722)
Q Consensus 59 ~v~l~g~~Lti~~v~avA~~~~~~~V~l~~~a~~ri~~s~~~l~~~~~~g~~iYGVnTGfG~~a~~~~--~~~~~LQ~~L 136 (722)
+|+|+|.+||++||++||+++..++|+++|++++||++|+++|++.+++|++|||||||||+++++++ ++..+||+||
T Consensus 25 ~v~l~g~~Lt~~~v~~va~~~~~~~v~l~~~a~~ri~~sr~~v~~~~~~g~~vYGvnTGfG~~a~~~I~~~~~~~LQ~nL 104 (565)
T 2nyn_A 25 NVIIGNQKLTINDVARVARNGTLVSLTNNTDILQGIQASCDYINNAVESGEPIYGVTSGFGGMANVAISREQASELQTNL 104 (565)
T ss_dssp CEEESSSCCCHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHSCC-----------------CCSHHHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHhCCCCceEeeCHHHHHHHHHHHHHHHHHHhcCCceeeeccCCCcccCcccCHHHHHHHHHHH
Confidence 58999999999999999974112899999999999999999999999999999999999999999885 7889999999
Q ss_pred HHHhhccccCCCCCCCCCCChHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHhCCCccccCCCCCCCCcCCchHHHHH
Q 004955 137 IRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYI 216 (722)
Q Consensus 137 ir~~~aGv~~~g~~~g~~lp~~~vRA~MlvRlNsL~~G~SGVr~evle~L~~lLN~~i~P~VP~rGSVGASGDL~PLS~I 216 (722)
||+|+||+| ++||+++|||+|++|+|+|++||||||||++|+|++|||+||+|+||++||||| ||+|||||
T Consensus 105 irsHa~GvG-------~~l~~~~vRa~mllRlnsL~~G~SGVr~evve~L~~lLN~~i~P~VP~~GSVGA--DLaPLAhi 175 (565)
T 2nyn_A 105 VWFLKTGAG-------NKLPLADVRAAMLLRANSHMRGASGIRLELIKRMEIFLNAGVTPYVYEFGSIGX--DLVPLSYI 175 (565)
T ss_dssp HHHTCCCEE-------EECCHHHHHHHHHHHHHHHTTSCSCCCHHHHHHHHHHHHHTEEECCEEESCCSS--CHHHHHHH
T ss_pred HHHHhccCC-------CCCCHHHHHHHHHHHHHHHccCcCCCcHHHHHHHHHHHhCCCccccCCCCCccc--hHHHHHHH
Confidence 999999995 899999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHhccCCCccccCCCCeeeCHHHHHHHCCCCCCCcccCCccchhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004955 217 AGLLTGRPNSKAVGPNGQVLNPTEAFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAE 296 (722)
Q Consensus 217 a~~L~G~g~~~~~~~~G~~~~a~eAL~~aGl~~~P~~L~pKEGLALiNGTa~s~a~aalal~~a~~L~~~a~v~~Als~E 296 (722)
|++|+|||+++.+.|+|+++|+.|||+++||+ |++|+|||||||||||++|+|+|+++++++++|+.++++++||++|
T Consensus 176 al~LiGeg~~~~v~~~G~~~~a~eaL~~aGl~--Pl~L~~KEGLALiNGT~~~ta~a~lal~~a~~L~~~A~~~~Als~E 253 (565)
T 2nyn_A 176 TGSLIGLDPSFKVDFNGKEMDAPTALRQLNLS--PLTLLPKEGLAMMNGTSVMTGIAANCVYDTQILTAIAMGVHALDIQ 253 (565)
T ss_dssp HHHHTTCCTTSEEEETTEEEEHHHHHHHTTCC--CCCCCTTHHHHHHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCceEEECCEEeeHHHHHHHcCCC--CccCCCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999955556899999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HhcCCccccchhhhhcCCCchHHHHHHHHHHHhcCChhhhhh-hhhcccCCCCCCCCCcccccccccchhhHHHHHHHHH
Q 004955 297 VMNGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAA-QKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRAAT 375 (722)
Q Consensus 297 al~G~~~~fd~~ih~~RphpGQ~e~A~~ir~lL~gS~~~~~~-~~~~~~d~~~~~~QD~YSlR~~PQvlG~~~d~l~~a~ 375 (722)
|++|++++|||++|++||||||+++|++||++|+||+++... .+.|.. ..++++||||||||+||||||++|+|++++
T Consensus 254 al~G~~~~fd~~ih~~Rph~GQ~~~A~~ir~lL~gS~l~~~~~~~~~~~-~~~~~vQD~YSlRc~PQv~Ga~~d~l~~a~ 332 (565)
T 2nyn_A 254 ALNGTNQSFHPFIHNSKPHPGQLWAADQMISLLANSQLVRDELDGKHDY-RDHELIQDRYSLRCLPQYLGPIVDGISQIA 332 (565)
T ss_dssp HTTCBSGGGCHHHHHTSCCHHHHHHHHHHHHHHTTCSSSBCCTTCC---------CCSCHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHcCchhhhCHHHHHhCCCchHHHHHHHHHHHhccCccccccccccccc-cCCCcCcCCcccccchhhhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998751 111100 013589999999999999999999999999
Q ss_pred HHHHHHHhccCCCCccccCCCccccCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCc
Q 004955 376 KMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLLFAQFSELVNDFYNNGLPSNLTGGRNPSL 455 (722)
Q Consensus 376 ~~ie~ElNS~~DNPlI~~~~~~vl~GGNF~g~~va~AmD~l~lAla~lg~l~~~r~~~Lvn~~~n~GLP~~L~~~~~p~l 455 (722)
++|++||||+|||||||+++|+++|||||||+||+++||++++|+++||+++|||+.+|+||.+|+|||+||+++++||+
T Consensus 333 ~~le~ElNS~tDNPlI~~~~g~v~sgGNFhg~~va~a~D~l~iAla~lg~lserR~~~Lvdp~~s~GLP~fL~~~~~~gl 412 (565)
T 2nyn_A 333 KQIEIEINSVTDNPLIDVDNQASYHGGNFLGQYVGMGMDHLRYYIGLLAKHLDVQIALLASPEFSNGLPPSLLGNRERKV 412 (565)
T ss_dssp HHHHHHHTSCCSSSEEEGGGTEEECCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTTSCCGGGCSCTTSTT
T ss_pred HHHHHHHhcCCCCCeEeCCCCeeccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCChhhcCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999998899999986433999
Q ss_pred cccchHHHHHHHHHHHHHhhccCC-CcccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-h
Q 004955 456 DYGFKGAEIAMASYCSELQFLANP-VTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHL-E 533 (722)
Q Consensus 456 ~~Gf~~~qi~~aal~sEl~~LA~P-vS~~~~sae~~nqDv~Sma~~saRk~~~~ve~l~~~~A~ell~a~QAidLR~~-~ 533 (722)
|||||++||++|||++|||+|||| +|+|++|+++|||||||||++||||+.+++|++++|+||||+++|||+|||+. .
T Consensus 413 nsGfmi~q~taaal~sE~k~La~P~aSvds~pts~~qED~vSmg~~aArk~~~~v~n~~~vlAiEll~a~QAidlr~~~~ 492 (565)
T 2nyn_A 413 NMGLKGLQICGNSIMPLLTFYGNSIADRFPTHAEQFNQNINSQGYTSATLARRSVDIFQNYVAIALMFGVQAVDLRTYKK 492 (565)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHTSCCGGGCCTTTTTTTCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHhcCCCeecccccccCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999 99999999999999999999999999999999999999999999999999963 2
Q ss_pred -------hhhhhHHHHHHHHHHHHHh----hcccCCCCCCCcCCHHHHHHHHhhh
Q 004955 534 -------ENLKNTVKNTVSQVAKRVL----TMGVNGELHPSRFCEKDLIKVVDRE 577 (722)
Q Consensus 534 -------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~dR~~~~~l~~~~~~~ 577 (722)
.++++.++++++.+|+.++ ....++.+.+||++.+||.++.+..
T Consensus 493 ~~~~~~~~~~~~~~~~~~~~vR~~vp~~~~~~~~~~~~~~DR~l~~di~~~~~~i 547 (565)
T 2nyn_A 493 TGHYDARACLSPATERLYSAVRHVVGQKPTSDRPYIWNDNEQGLDEHIARISADI 547 (565)
T ss_dssp HSSCCGGGTSCHHHHHHHHHHHHHHTCCCBTTBCSCCCGGGCCHHHHHHHHHHHH
T ss_pred cccccccccCChhHHHHHHHHHHhCCccccccccCCCCCCCcccHHHHHHHHHHH
Confidence 5789999999999999998 3344556778999999999988765
No 6
>1gkm_A Histidase, HAL, histidine ammonia-lyase; histidine degradation; HET: MDO; 1.0A {Pseudomonas putida} SCOP: a.127.1.2 PDB: 1b8f_A* 1gkj_A* 1eb4_A* 1gk3_A 1gk2_A
Probab=100.00 E-value=5.5e-146 Score=1219.37 Aligned_cols=487 Identities=29% Similarity=0.434 Sum_probs=469.2
Q ss_pred eEEEcCCCcCHHHHHHHHhhCCCCeEEeCHHHHHHHHHHHHHHHHHHhcCCceeccccCCCCCCCccc--cchhhhHHHH
Q 004955 59 VVKLGGESLTIGQVTAIAAHDSGVKVELAEAARAGVKASSDWVMDSMMKGTDSYGVTTGFGATSHRRT--KQGGALQKEL 136 (722)
Q Consensus 59 ~v~l~g~~Lti~~v~avA~~~~~~~V~l~~~a~~ri~~s~~~l~~~~~~g~~iYGVnTGfG~~a~~~~--~~~~~LQ~~L 136 (722)
+|+|+|.+||++||++||+ ++++|+++|++++||++||++|++.+++|++|||||||||+++++++ ++..+||+||
T Consensus 2 ~v~l~g~~Lt~~~v~~va~--~~~~v~l~~~a~~~i~~s~~~v~~~~~~~~~vYGvnTGfG~~~~~~I~~~~~~~lQ~nL 79 (507)
T 1gkm_A 2 ELTLKPGTLTLAQLRAIHA--APVRLQLDASAAPAIDASVACVEQIIAEDRTAYGINTGFGLLASTRIASHDLENLQRSL 79 (507)
T ss_dssp EEEECTTCCCHHHHHHHHH--SCCEEEECGGGHHHHHHHHHHHHHHHHTTCCCTTTTBCSGGGTTCBCCHHHHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHc--CCCceeeCHHHHHHHHHHHHHHHHHHhcCCceeeeccCCCcccCcccCHHHHHHHHHHH
Confidence 5789999999999999997 57999999999999999999999999999999999999999999986 6889999999
Q ss_pred HHHhhccccCCCCCCCCCCChHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHhCCCccccCCCCCCCCcCCchHHHHH
Q 004955 137 IRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYI 216 (722)
Q Consensus 137 ir~~~aGv~~~g~~~g~~lp~~~vRA~MlvRlNsL~~G~SGVr~evle~L~~lLN~~i~P~VP~rGSVGASGDL~PLS~I 216 (722)
||+|+||+| ++||+++|||+|++|+|+|++||||||||++|+|++|||+||+|+||++|||| |||+|||||
T Consensus 80 i~sha~GvG-------~~l~~~~vRa~m~~RlnsL~~G~SGVr~evv~~l~~~LN~~i~P~VP~~GSvG--GDLapLahi 150 (507)
T 1gkm_A 80 VLSHAAGIG-------APLDDDLVRLIMVLKINSLSRGFSGIRRKVIDALIALVNAEVYPHIPLKGSVG--XDLAPLAHM 150 (507)
T ss_dssp HHHHCCCEE-------EECCHHHHHHHHHHHHHHHTTSCSCCCHHHHHHHHHHHHHTEEECCEEECCCC--CSHHHHHHH
T ss_pred HHHHhccCC-------CCCCHHHHHHHHHHHHHHHccCcCcCcHHHHHHHHHHHHCCCcccCCCCCCcc--hhhHHHHHH
Confidence 999999995 89999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHhccCCCccccCCCCeeeCHHHHHHHCCCCCCCcccCCccchhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004955 217 AGLLTGRPNSKAVGPNGQVLNPTEAFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAE 296 (722)
Q Consensus 217 a~~L~G~g~~~~~~~~G~~~~a~eAL~~aGl~~~P~~L~pKEGLALiNGTa~s~a~aalal~~a~~L~~~a~v~~Als~E 296 (722)
|++|+|||+++ |+|+++|+.|||+++||+ |++|+|||||||||||++|+|+|+++++++++|++++++++||++|
T Consensus 151 al~LiGeg~v~---~~G~~~~a~eaL~~~Gl~--P~~L~~KEGLALiNGT~~~ta~a~lal~~a~~L~~~a~~~~Als~E 225 (507)
T 1gkm_A 151 SLVLLGEGKAR---YKGQWLSATEALAVAGLE--PLTLAAKEGLALLNGTQASTAYALRGLFYAEDLYAAAIACGGLSVE 225 (507)
T ss_dssp HHGGGTCSEEE---ETTEEEEHHHHHHHTTCC--CCCCCTTHHHHHHSBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCcee---ECCEEeeHHHHHHHcCCC--CCCCCcchhHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999865 899999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HhcCCccccchhhhhcCCCchHHHHHHHHHHHh-cCChhhhhhhhhcccCCCCCCCCCcccccccccchhhHHHHHHHHH
Q 004955 297 VMNGKPEFTDHLTHKLKHHPGQIEAAAIMEHIL-DGSSYVKAAQKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRAAT 375 (722)
Q Consensus 297 al~G~~~~fd~~ih~~RphpGQ~e~A~~ir~lL-~gS~~~~~~~~~~~~d~~~~~~QD~YSlR~~PQvlG~~~d~l~~a~ 375 (722)
+++|++++|||++|++||||||+++|++||++| +||+++.... .++++||||||||+||||||++|+|++++
T Consensus 226 al~G~~~~fd~~i~~~Rph~GQ~~~A~~lr~lL~~gS~l~~~~~-------~~~~vQD~YSlRc~PQv~Ga~~d~l~~a~ 298 (507)
T 1gkm_A 226 AVLGSRSPFDARIHEARGQRGQIDTAACFRDLLGDSSEVSLSHK-------NADKVQDPYSLRCQPQVMGACLTQLRQAA 298 (507)
T ss_dssp HTTCCSGGGCHHHHHHHCCHHHHHHHHHHHHHHCSCCHHHHHTT-------TGGGSCCCHHHHTHHHHHHHHHHHHHHHH
T ss_pred HhcCchhhhCHHHHHhccCchHHHHHHHHHHHHHcCChhhhccC-------CCCcCcCCcccccchhhhHHHHHHHHHHH
Confidence 999999999999999999999999999999999 9999987542 13489999999999999999999999999
Q ss_pred HHHHHHHhccCCCCccccCCCccccCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCc
Q 004955 376 KMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLLFAQFSELVNDFYNNGLPSNLTGGRNPSL 455 (722)
Q Consensus 376 ~~ie~ElNS~~DNPlI~~~~~~vl~GGNF~g~~va~AmD~l~lAla~lg~l~~~r~~~Lvn~~~n~GLP~~L~~~~~p~l 455 (722)
++|++||||+||||+||+++++++|||||||+||+++||++++|+++||+++|||+.+|+||.+| |||+||++ +||+
T Consensus 299 ~~le~ElNS~tDNPli~~~~~~v~sgGNFhg~~va~a~D~l~iAla~l~~iserR~~~L~d~~~s-gLP~fL~~--~~gl 375 (507)
T 1gkm_A 299 EVLGIEANAVSDNPLVFAAEGDVISGGNFHAEPVAMAADNLALAIAEIGSLSERRISLMMDKHMS-QLPPFLVE--NGGV 375 (507)
T ss_dssp HHHHHHHTCCCCSSEEETTTTEEECCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH-SSCGGGCS--STTT
T ss_pred HHHHHHHhcCCCCCeeeCCCCccccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-CCChhhcC--CCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999986 99999984 7999
Q ss_pred cccchHHHHHHHHHHHHHhhccCCCcccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 004955 456 DYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEEN 535 (722)
Q Consensus 456 ~~Gf~~~qi~~aal~sEl~~LA~PvS~~~~sae~~nqDv~Sma~~saRk~~~~ve~l~~~~A~ell~a~QAidLR~~~~~ 535 (722)
|||||++||++|||++|||+||+|+|+|++|+++|||||||||++||||+.+++|++++|+|||++++|||+|||+ +.+
T Consensus 376 nsGfmi~q~taaal~sE~k~La~PaSvds~pts~~qED~vSmg~~aArk~~~~v~n~~~vlAiEll~a~QAidlr~-~~~ 454 (507)
T 1gkm_A 376 NSGFMIAQVTAAALASENKALSHPHSVDSLPTSANQEDHVSMAPAAGKRLWEMAENTRGVLAIEWLGACQGLDLRK-GLK 454 (507)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHTSCSTTCCCCBTTTTBCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST-TCC
T ss_pred CccchHHHHHHHHHHHHHHHhcCCcccCCccccCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999996 567
Q ss_pred hhhHHHHHHHHHHHHHhhcccCCCCCCCcCCHHHHHHHHhhhh
Q 004955 536 LKNTVKNTVSQVAKRVLTMGVNGELHPSRFCEKDLIKVVDREY 578 (722)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dR~~~~~l~~~~~~~~ 578 (722)
+++.++++++.+|+++++++ +||++.+||.++.+...
T Consensus 455 ~~~~~~~~~~~vR~~vp~~~------~DR~l~~di~~~~~~l~ 491 (507)
T 1gkm_A 455 TSAKLEKARQALRSEVAHYD------RDRFFAPDIEKAVELLA 491 (507)
T ss_dssp CCHHHHHHHHHHHTTSCCCC------SCCCCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCcc------CCcCcHHHHHHHHHHHH
Confidence 89999999999999998755 69999999999887653
No 7
>2o6y_A Putative histidine ammonia-lyase; methylidene imidazolone prosthetic group; HET: MDO; 1.50A {Rhodobacter sphaeroides} PDB: 2o7b_A* 2o7d_A* 2o7e_A* 2o78_A* 2o7f_A*
Probab=100.00 E-value=4.6e-145 Score=1215.24 Aligned_cols=494 Identities=29% Similarity=0.434 Sum_probs=469.5
Q ss_pred eEEEcCCCcCHHHHHHHHhhCCCCeEEeCHHHHHHHHHHHHHHHHHHhcCCceeccccCCCCCCCccc--cchhhhHHHH
Q 004955 59 VVKLGGESLTIGQVTAIAAHDSGVKVELAEAARAGVKASSDWVMDSMMKGTDSYGVTTGFGATSHRRT--KQGGALQKEL 136 (722)
Q Consensus 59 ~v~l~g~~Lti~~v~avA~~~~~~~V~l~~~a~~ri~~s~~~l~~~~~~g~~iYGVnTGfG~~a~~~~--~~~~~LQ~~L 136 (722)
.|+|+ .+||++||++||+ ++.+|+|+|++++||++||++|++.+++|++|||||||||+++++++ ++..+||+||
T Consensus 10 ~v~l~-~~Ltl~~v~~va~--~~~~v~l~~~a~~ri~~s~~~v~~~~~~~~~vYGvnTGfG~~~~~~i~~~~~~~lQ~nL 86 (521)
T 2o6y_A 10 AVELD-RHIDLDQAHAVAS--GGARIVLAPPARDRCRASEARLGAVIREARHVYGLTTGFGPLANRLISGENVRTLQANL 86 (521)
T ss_dssp EEEES-SCCCHHHHHHHHT--TSSEEEECHHHHHHHHHHHHHHHHHHHTTBCCTTTSBCSGGGGGBBCCGGGHHHHHHHH
T ss_pred eEEeC-CCCCHHHHHHHHc--CCCcEeeCHHHHHHHHHHHHHHHHHHhcCCCcceecCCCCcccCccCCHHHHHHHHHHH
Confidence 38899 9999999999997 57999999999999999999999999999999999999999999988 7899999999
Q ss_pred HHHhhccccCCCCCCCCCCChHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHhCCCccccCCCCCCCCcCCchHHHHH
Q 004955 137 IRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYI 216 (722)
Q Consensus 137 ir~~~aGv~~~g~~~g~~lp~~~vRA~MlvRlNsL~~G~SGVr~evle~L~~lLN~~i~P~VP~rGSVGASGDL~PLS~I 216 (722)
||+|+||+| ++||+++|||+|++|+|+|++||||||||++|+|++|||+||+|+||++||||| ||+|||||
T Consensus 87 i~sha~GvG-------~~l~~~~vRa~m~~RlnsL~~G~SGVr~evve~l~~~LN~~i~P~VP~~GSvGA--DLaPLahi 157 (521)
T 2o6y_A 87 VHHLASGVG-------PVLDWTTARAMVLARLVSIAQGASGASEGTIARLIDLLNSELAPAVPSRGTVGX--DLTPLAHM 157 (521)
T ss_dssp HHHHCCCEE-------EECCHHHHHHHHHHHHHHHTTSCSCCCHHHHHHHHHHHTSSCEECCEEECCCSS--CHHHHHHH
T ss_pred HHHHhccCC-------CCCCHHHHHHHHHHHHHHHccCCCcCcHHHHHHHHHHHhCCCcccCCCCCCccc--chHHHHHH
Confidence 999999995 899999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHhccCCCccccCCCCeeeCHHHHHHHCCCCCCCcccCCccchhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004955 217 AGLLTGRPNSKAVGPNGQVLNPTEAFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAE 296 (722)
Q Consensus 217 a~~L~G~g~~~~~~~~G~~~~a~eAL~~aGl~~~P~~L~pKEGLALiNGTa~s~a~aalal~~a~~L~~~a~v~~Als~E 296 (722)
|++|+|||+++ .|+|+++|+.|||+++||+ |++|+|||||||||||++|+|+|+++++++++|+.++++++||++|
T Consensus 158 al~LiGeg~v~--~~~G~~~~a~eaL~~aGl~--P~~L~~KEGLALiNGT~~~ta~a~lal~~a~~L~~~a~~~~Als~E 233 (521)
T 2o6y_A 158 VLCLQGRGDFL--DRDGTRLDGAEGLRRGRLQ--PLDLSHRDALALVNGTSAMTGIALVNAHACRHLGNWAVALTALLAE 233 (521)
T ss_dssp HHHHTTSSCEE--CTTCCEECHHHHHHHTTCC--CCCCTTSCGGGTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCceE--eeCCEEecHHHHHHHcCCC--CCCCCcchHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999864 3799999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HhcCCccccchhhhhcCCCchHHHHHHHHHHHhcCChhhhhhh------hhcccCCCCCCCCCcccccccccchhhHHHH
Q 004955 297 VMNGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAQ------KLHEIDPLQKPKQDRYALRTSPQWLGPQIEV 370 (722)
Q Consensus 297 al~G~~~~fd~~ih~~RphpGQ~e~A~~ir~lL~gS~~~~~~~------~~~~~d~~~~~~QD~YSlR~~PQvlG~~~d~ 370 (722)
+++|++++|||++|++||||||+++|++||++|+||+++...+ ..++.++.++++||||||||+||||||++|+
T Consensus 234 al~G~~~~fd~~ih~~Rph~GQ~~~A~~ir~lL~gS~l~~~~~~~~~~~~~~~~~~~~~~vQD~YSlRc~PQv~Ga~~d~ 313 (521)
T 2o6y_A 234 CLRGRTEAWAAALSDLRPHPGQKDAAARLRARVDGSARVVRHVIAERRLDAGDIGTEPEAGQDAYSLRCAPQVLGAGFDT 313 (521)
T ss_dssp HTTCBGGGGCHHHHHHSCCHHHHHHHHHHHHHTTTCSSSBCCCGGGCBCCGGGCSBCSSCSSCCHHHHTHHHHHHHHHHH
T ss_pred HhcCchhhhCHHHHhcCCCchHHHHHHHHHHHhccCccccccccccccccccccccccCcCcCcccccchhhhhHHHHHH
Confidence 9999999999999999999999999999999999999987653 2223334456999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCCccccCCC--ccccCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCC
Q 004955 371 IRAATKMIEREINSVNDNPLIDVSRN--KALHGGNFQGTPIGVSMDNTRLAIASIGKLLFAQFSELVNDFYNNGLPSNLT 448 (722)
Q Consensus 371 l~~a~~~ie~ElNS~~DNPlI~~~~~--~vl~GGNF~g~~va~AmD~l~lAla~lg~l~~~r~~~Lvn~~~n~GLP~~L~ 448 (722)
|++++++|++||||+||||+ |++++ +++|||||||+||+++||++++|+++||+++|||+.+|+||.+|+|||+||+
T Consensus 314 l~~a~~~l~~ElNS~tDNPl-~~~~~~~~v~sgGNFhg~~va~a~D~l~iAla~l~~iserR~~~L~~~~~~~gLP~fL~ 392 (521)
T 2o6y_A 314 LAWHDRVLTIELNAVTDNPV-FPPDGSVPALHGGNFMGQHVALTSDALATAVTVLAGLAERQIARLTDERLNRGLPPFLH 392 (521)
T ss_dssp HHHHHHHHHHHHTSCCCSSB-CCTTCSSSCBCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTTTTTCCGGGC
T ss_pred HHHHHHHHHHHHhcCCcCCC-CCCCCCceeccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCChhcC
Confidence 99999999999999999999 98888 9999999999999999999999999999999999999999999889999994
Q ss_pred CCCCCCccccchHHHHHHHHHHHHHhhccCCCcccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004955 449 GGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAID 528 (722)
Q Consensus 449 ~~~~p~l~~Gf~~~qi~~aal~sEl~~LA~PvS~~~~sae~~nqDv~Sma~~saRk~~~~ve~l~~~~A~ell~a~QAid 528 (722)
. ++||+|||||++||++|||++|||+|| |+|+|++|+++|||||||||++||||+.+++|++++|+|||++++|||+|
T Consensus 393 ~-~~~glnsGfm~~q~taaal~sE~k~La-PaS~ds~pts~~~ED~vSmg~~aArk~~~~v~n~~~vlAiell~a~QAid 470 (521)
T 2o6y_A 393 R-GPAGLNSGFMGAQVTATALLAEMRATG-PASIHSISTNAANQDVVSLGTIAARLCREKIDRWAEILAILALCLAQAAE 470 (521)
T ss_dssp C-SSBTTBCTTHHHHHHHHHHHHHHHTBC-CSGGGCCCBTTTTBCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCCCcccchHHHHHHHHHHHHHHHHhC-CCccCcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 589999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred hhhhh-hh-hhhHHHHHHHHHHHHHhhcccCCCCCCCcCCHHHHHHHHhhh
Q 004955 529 LRHLE-EN-LKNTVKNTVSQVAKRVLTMGVNGELHPSRFCEKDLIKVVDRE 577 (722)
Q Consensus 529 LR~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~dR~~~~~l~~~~~~~ 577 (722)
||..+ .+ +++.++++++.+|+.+++++ +||++.+||.++.+..
T Consensus 471 lr~~~~~~~~~~~~~~~~~~vR~~vp~~~------~DR~l~~di~~~~~~l 515 (521)
T 2o6y_A 471 LRCGSGLDGVSPAGKKLVQALREQFPPLE------TDRPLGQEIAALATHL 515 (521)
T ss_dssp HHHTTTTTTCCHHHHHHHHHHHTTSCCCS------SCCCCHHHHHHHHHHH
T ss_pred HhccccccCCChhHHHHHHHHHHhCCCcc------CCcCcHHHHHHHHHHH
Confidence 99433 45 89999999999999988755 6999999999987755
No 8
>2qve_A Tyrosine aminomutase; MIO, enediyne, transferase; HET: MDO 247; 2.00A {Streptomyces globisporus} PDB: 2rjr_A* 2rjs_A* 2ohy_A* 3kdz_A* 3kdy_A*
Probab=100.00 E-value=5.2e-145 Score=1215.91 Aligned_cols=493 Identities=30% Similarity=0.446 Sum_probs=469.5
Q ss_pred eEEEcCCCcCHHHHHHHHhhCCCCeEEeCHHHHHHHHHHHHHHHHHHhcCCceeccccCCCCCCCccc--cchhhhHHHH
Q 004955 59 VVKLGGESLTIGQVTAIAAHDSGVKVELAEAARAGVKASSDWVMDSMMKGTDSYGVTTGFGATSHRRT--KQGGALQKEL 136 (722)
Q Consensus 59 ~v~l~g~~Lti~~v~avA~~~~~~~V~l~~~a~~ri~~s~~~l~~~~~~g~~iYGVnTGfG~~a~~~~--~~~~~LQ~~L 136 (722)
.|+|+|.+||++||++||+ ++.+|+|+|++++||++|+++|++.+++|++|||||||||+++++++ ++..+||+||
T Consensus 1 ~v~l~g~~Lt~~~v~~va~--~~~~v~l~~~a~~ri~~s~~~v~~~~~~~~~vYGvnTGfG~~a~~~i~~~~~~~LQ~nL 78 (526)
T 2qve_A 1 PVSVDGETLTVEAVRRVAE--ERATVDVPAESIAKAQKSREIFEGIAEQNIPIYGVTTGYGEMIYMQVDKSKEVELQTNL 78 (526)
T ss_dssp CEECCSSSCCHHHHHHHHH--SCCCEECCHHHHHHHHHHHHHHHHHHTTTCCCTTTSBCSGGGGGEEECGGGHHHHHHHH
T ss_pred CeEecCCCCCHHHHHHHHc--CCCcEeeCHHHHHHHHHHHHHHHHHHhcCCceeeeccCCCcccCCCcCHHHHHHHHHHH
Confidence 3679999999999999997 57999999999999999999999999999999999999999999987 7899999999
Q ss_pred HHHhhccccCCCCCCCCCCChHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHhCCCccccCCCCCCCCcCCchHHHHH
Q 004955 137 IRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYI 216 (722)
Q Consensus 137 ir~~~aGv~~~g~~~g~~lp~~~vRA~MlvRlNsL~~G~SGVr~evle~L~~lLN~~i~P~VP~rGSVGASGDL~PLS~I 216 (722)
||+|+||+| ++||+++|||+|++|+|+|++|||||||+++|+|++|||+||+|+||++||||| ||+|||||
T Consensus 79 i~sha~GvG-------~~l~~~~vRa~m~~RlnsL~~G~SGVr~evve~l~~~LN~~i~P~VP~~GSvGA--DLaPLahi 149 (526)
T 2qve_A 79 VRSHSAGVG-------PLFAEDEARAIVAARLNTLAKGHSAVRPIILERLAQYLNEGITPAIPEIGSLGX--DLAPLSHV 149 (526)
T ss_dssp HHHTCCCEE-------EECCHHHHHHHHHHHHHHHTTSCSCCCHHHHHHHHHHHHTTCEECCEEECCCSS--CHHHHHHH
T ss_pred HHHHhccCC-------CCCCHHHHHHHHHHHHHHHccCcCCCcHHHHHHHHHHHhCCCccccCCCCCcch--hhHHHHHH
Confidence 999999995 899999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHhccCCCccccCCCCeeeCHHHHHHHCCCCCCCcccCCccchhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004955 217 AGLLTGRPNSKAVGPNGQVLNPTEAFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAE 296 (722)
Q Consensus 217 a~~L~G~g~~~~~~~~G~~~~a~eAL~~aGl~~~P~~L~pKEGLALiNGTa~s~a~aalal~~a~~L~~~a~v~~Als~E 296 (722)
|++|+|||+++ |+|+++|+.|||+++||+ |++|+|||||||||||++|+|+|+++++++++|+.++++++||++|
T Consensus 150 al~LiGeg~v~---~~G~~~~a~eaL~~~Gl~--P~~L~~KEGLALiNGT~~~ta~a~lal~~a~~L~~~a~~~~Als~E 224 (526)
T 2qve_A 150 ASTLIGEGYVL---RDGRPVETAQVLAERGIE--PLELRFKEGLALINGTSGMTGLGSLVVGRALEQAQQAEIVTALLIE 224 (526)
T ss_dssp HHHHTTCSEEE---ETTEEEEHHHHHHTTTCC--CCCCCTTHHHHHHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCcee---ECCEeecHHHHHHHcCCC--CCCCCchHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999865 899999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HhcCCccccchhhhhc-CCCchHHHHHHHHHHHhcCChhhhhhhhhc-----------ccCCCCCCCCCcccccccccch
Q 004955 297 VMNGKPEFTDHLTHKL-KHHPGQIEAAAIMEHILDGSSYVKAAQKLH-----------EIDPLQKPKQDRYALRTSPQWL 364 (722)
Q Consensus 297 al~G~~~~fd~~ih~~-RphpGQ~e~A~~ir~lL~gS~~~~~~~~~~-----------~~d~~~~~~QD~YSlR~~PQvl 364 (722)
+++|++++|||++|++ ||||||+++|++||.+|+||+++...+..+ ..++.++++||||||||+||||
T Consensus 225 al~G~~~~fd~~ih~~~Rph~GQ~~~A~~lr~lL~gS~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vQD~YSlRc~PQv~ 304 (526)
T 2qve_A 225 AVRGSTSPFLAEGHDIARPHEGQIDTAANMRALMRGSGLTVEHADLRRELQKDKEAGKDVQRSEIYLQKAYSLRAIPQVV 304 (526)
T ss_dssp HTTCBSGGGCGGGTTTTCCCHHHHHHHHHHHHHHTTCSSSBCHHHHHHHHHHHCCSSCSEECCSCCSSCCGGGTSHHHHH
T ss_pred HhcCchhhhCHHHHhccCCCchHHHHHHHHHHHhccCcccccchhhhcccccccccccccccccCcCcCCeeccchhhhh
Confidence 9999999999999999 999999999999999999999987654211 1223346899999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhccCCCCccccCCCccccCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 004955 365 GPQIEVIRAATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLLFAQFSELVNDFYNNGLP 444 (722)
Q Consensus 365 G~~~d~l~~a~~~ie~ElNS~~DNPlI~~~~~~vl~GGNF~g~~va~AmD~l~lAla~lg~l~~~r~~~Lvn~~~n~GLP 444 (722)
||++|+|++++++|++||||+||||||| ++|+++|||||||+||+++||++++|+++||+++|||+.+|+||.+|+|||
T Consensus 305 Ga~~d~l~~a~~~le~ElNS~tDNPli~-~~~~v~sgGNFhg~~va~a~D~l~iAla~lg~lserR~~~L~d~~~~~gLP 383 (526)
T 2qve_A 305 GAVRDTLYHARHKLRIELNSANDNPLFF-EGKEIFHGANFHGQPIAFAMDFVTIALTQLGVLAERQINRVLNRHLSYGLP 383 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCCSSBCC-TTSCCBCSCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSSSCC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCccc-CCCceecCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCC
Confidence 9999999999999999999999999999 899999999999999999999999999999999999999999999988999
Q ss_pred CCCCCCCCCCccccchHHHHHHHHHHHHHhhccCCCcccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004955 445 SNLTGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALC 524 (722)
Q Consensus 445 ~~L~~~~~p~l~~Gf~~~qi~~aal~sEl~~LA~PvS~~~~sae~~nqDv~Sma~~saRk~~~~ve~l~~~~A~ell~a~ 524 (722)
+||+. ++||+|||||++||++|||++|||+|| |+|+|++|+++|||||||||++||||+.+++|++++|+|||++++|
T Consensus 384 ~fL~~-~~~glnsGfm~~q~taaal~sE~k~La-PaSvds~pts~~~ED~vSmg~~aArk~~~~v~n~~~vlAiEll~a~ 461 (526)
T 2qve_A 384 EFLVS-GDPGLHSGFAGAQYPATALVAENRTIG-PASTQSVPSNGDNQDVVSMGLISARNARRVLSNNNKILAVEYLAAA 461 (526)
T ss_dssp GGGCS-SCBTTBCTTHHHHHHHHHHHHHHTTCC-CSTTCCCCBTTTTBCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCC-CCCCcCcccHHHHHHHHHHHHHHHHhC-CCccCCccccCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99943 589999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhh-hhhHHHHHHHHHHHHHhhcccCCCCCCCcCCHHHHHHHHhhh
Q 004955 525 QAIDLRHLEEN-LKNTVKNTVSQVAKRVLTMGVNGELHPSRFCEKDLIKVVDRE 577 (722)
Q Consensus 525 QAidLR~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~dR~~~~~l~~~~~~~ 577 (722)
||+|||+ +.+ +++.++++++.+|+.+++++ +||++.+||.++.+..
T Consensus 462 QAidlr~-~~~~~~~~~~~~~~~vR~~vp~~~------~DR~l~~di~~~~~~l 508 (526)
T 2qve_A 462 QAVDISG-RFDGLSPAAKATYEAVRRLVPTLG------VDRYMADDIELVADAL 508 (526)
T ss_dssp HHHHHHT-CGGGSCHHHHHHHHHHHHHSCCCC------SCCCCHHHHHHHHHHH
T ss_pred HHHHHhc-cccCCChhHHHHHHHHHHhCCCcc------CCcCcHHHHHHHHHHH
Confidence 9999996 355 89999999999999998755 6999999999987755
No 9
>3l9k_W Dynein intermediate chain, cytosolic; LC7, light chain 7, KM23, RO hydrolase, alternative splicing, lysosome, membrane; 3.00A {Drosophila melanogaster}
Probab=14.32 E-value=2.8e+02 Score=20.50 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=23.9
Q ss_pred eCHHHHHHHHHHHHHHHHHHhcCCcee
Q 004955 86 LAEAARAGVKASSDWVMDSMMKGTDSY 112 (722)
Q Consensus 86 l~~~a~~ri~~s~~~l~~~~~~g~~iY 112 (722)
.|++...-+++|.+.+++++.+..+||
T Consensus 11 ~S~~F~~F~~rsskviERAL~e~yDi~ 37 (38)
T 3l9k_W 11 LSENFQRFVVRAGRVIERALSENVDIY 37 (38)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred cCHHHHHHHHHHHHHHHHHHccccccc
Confidence 489999999999999999999877665
No 10
>2qve_A Tyrosine aminomutase; MIO, enediyne, transferase; HET: MDO 247; 2.00A {Streptomyces globisporus} PDB: 2rjr_A* 2rjs_A* 2ohy_A* 3kdz_A* 3kdy_A*
Probab=11.86 E-value=85 Score=35.55 Aligned_cols=46 Identities=17% Similarity=0.252 Sum_probs=38.8
Q ss_pred ccccchhhHHHHhhhCcccccCccccCCCchHHHHHHHHhcCcchhhHHH
Q 004955 658 ECRSYPLYKIVREEIGTSLLTGEKVRSPGEEFDKVFAAMCEGKLIDPMLE 707 (722)
Q Consensus 658 ~~rS~pLY~FVR~eLgVpfh~Ge~~~t~G~~~~~i~~ai~~g~~~~~Lle 707 (722)
+.++..+|+.||+. |||.. +++....+|.++.+.|++|++...+-+
T Consensus 474 ~~~~~~~~~~vR~~--vp~~~--~DR~l~~di~~~~~~l~~~~~~~~~~~ 519 (526)
T 2qve_A 474 SPAAKATYEAVRRL--VPTLG--VDRYMADDIELVADALSRGEFLRAIAR 519 (526)
T ss_dssp CHHHHHHHHHHHHH--SCCCC--SCCCCHHHHHHHHHHHHTTHHHHHHHH
T ss_pred ChhHHHHHHHHHHh--CCCcc--CCcCcHHHHHHHHHHHHcCcHHHHHHH
Confidence 66889999999997 77774 668899999999999999998666544
Done!