Query 004956
Match_columns 722
No_of_seqs 348 out of 1888
Neff 7.1
Searched_HMMs 46136
Date Thu Mar 28 15:41:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004956.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004956hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2348 Urea transporter [Amin 100.0 7E-134 1E-138 1055.5 18.6 639 33-687 1-652 (667)
2 TIGR02121 Na_Pro_sym sodium/pr 100.0 1.6E-60 3.6E-65 541.8 54.2 462 46-558 3-473 (487)
3 PRK15419 proline:sodium sympor 100.0 2.2E-60 4.8E-65 542.5 52.7 460 47-558 8-478 (502)
4 PRK10484 putative transporter; 100.0 3.5E-60 7.5E-65 543.4 54.5 465 49-559 6-487 (523)
5 PRK09442 panF sodium/panthothe 100.0 1.4E-59 3.1E-64 534.0 51.5 465 44-558 3-475 (483)
6 PRK09395 actP acetate permease 100.0 4.8E-59 1E-63 536.5 53.6 484 40-558 30-525 (551)
7 PRK12488 acetate permease; Pro 100.0 1.2E-58 2.7E-63 532.2 53.7 482 40-556 28-521 (549)
8 TIGR02119 panF sodium/pantothe 100.0 5.5E-58 1.2E-62 519.7 50.9 461 47-555 4-470 (471)
9 COG0591 PutP Na+/proline sympo 100.0 7.1E-58 1.5E-62 518.9 51.1 473 47-556 6-486 (493)
10 TIGR02711 symport_actP cation/ 100.0 2.3E-56 5E-61 513.5 54.2 479 44-557 32-522 (549)
11 COG4145 PanF Na+/panthothenate 100.0 3.6E-55 7.7E-60 454.0 38.4 456 47-556 4-470 (473)
12 TIGR03648 Na_symport_lg probab 100.0 4E-54 8.8E-59 496.1 50.4 472 50-557 5-539 (552)
13 TIGR00813 sss transporter, SSS 100.0 9.2E-54 2E-58 476.6 40.1 399 81-501 1-407 (407)
14 PF00474 SSF: Sodium:solute sy 100.0 1.3E-54 2.7E-59 483.3 30.7 397 78-501 1-406 (406)
15 COG4147 DhlC Predicted symport 100.0 4.2E-50 9.2E-55 429.9 36.2 462 69-559 27-514 (529)
16 KOG2349 Na+:iodide/myo-inosito 100.0 4E-50 8.7E-55 448.1 9.4 437 40-507 7-451 (585)
17 COG4146 Predicted symporter [G 100.0 3.6E-43 7.8E-48 363.4 26.9 480 45-569 4-497 (571)
18 KOG3761 Choline transporter [L 100.0 8.5E-33 1.8E-37 282.5 1.9 421 48-504 8-455 (591)
19 PRK00701 manganese transport p 98.9 6.2E-06 1.3E-10 93.1 35.4 130 83-218 35-166 (439)
20 COG1914 MntH Mn2+ and Fe2+ tra 98.5 0.0014 3E-08 73.3 38.5 128 85-218 20-147 (416)
21 PRK11017 codB cytosine permeas 98.5 0.0027 5.8E-08 71.3 39.7 106 146-255 69-174 (404)
22 PF01566 Nramp: Natural resist 98.4 0.0002 4.4E-09 78.9 29.7 109 108-219 5-115 (358)
23 TIGR01197 nramp NRAMP (natural 98.4 0.0013 2.8E-08 73.2 35.7 129 84-218 6-136 (390)
24 TIGR00835 agcS amino acid carr 98.2 0.013 2.8E-07 65.7 37.9 151 83-235 45-203 (425)
25 PF01235 Na_Ala_symp: Sodium:a 98.2 0.00063 1.4E-08 75.8 27.0 139 83-222 17-163 (416)
26 PRK11375 allantoin permease; P 98.2 0.027 5.8E-07 64.8 40.7 98 146-243 87-203 (484)
27 TIGR00814 stp serine transport 98.0 0.055 1.2E-06 60.6 36.1 96 146-241 64-165 (397)
28 COG1115 AlsT Na+/alanine sympo 98.0 0.012 2.6E-07 65.4 30.0 144 80-224 58-209 (452)
29 TIGR00905 2A0302 transporter, 97.9 0.083 1.8E-06 60.5 39.9 158 82-240 6-171 (473)
30 TIGR00796 livcs branched-chain 97.9 0.027 5.8E-07 62.5 31.6 285 92-417 2-298 (378)
31 PRK15049 L-asparagine permease 97.9 0.097 2.1E-06 60.5 39.0 155 82-238 27-184 (499)
32 TIGR01773 GABAperm gamma-amino 97.9 0.047 1E-06 62.0 34.4 113 81-194 10-122 (452)
33 PF03222 Trp_Tyr_perm: Tryptop 97.8 0.073 1.6E-06 59.6 33.8 134 102-239 19-158 (394)
34 TIGR00909 2A0306 amino acid tr 97.8 0.047 1E-06 61.5 32.8 158 82-240 2-175 (429)
35 PRK10746 putative transport pr 97.8 0.13 2.7E-06 58.9 37.1 154 82-237 9-163 (461)
36 PRK10249 phenylalanine transpo 97.8 0.038 8.2E-07 63.1 31.6 154 82-237 20-174 (458)
37 PRK10238 aromatic amino acid t 97.8 0.053 1.2E-06 61.8 32.3 155 81-238 10-166 (456)
38 TIGR00800 ncs1 NCS1 nucleoside 97.6 0.14 3E-06 58.2 32.7 94 147-240 75-182 (442)
39 COG1457 CodB Purine-cytosine p 97.6 0.11 2.5E-06 58.3 31.0 94 149-243 80-175 (442)
40 PRK11387 S-methylmethionine tr 97.6 0.24 5.2E-06 56.7 38.5 154 82-237 13-168 (471)
41 TIGR00837 araaP aromatic amino 97.6 0.19 4E-06 55.8 32.4 135 102-237 13-153 (381)
42 PF05525 Branch_AA_trans: Bran 97.6 0.13 2.8E-06 57.8 30.8 346 87-488 5-360 (427)
43 PRK09950 putative transporter; 97.6 0.21 4.5E-06 57.4 32.8 59 172-233 202-265 (506)
44 PRK11049 D-alanine/D-serine/gl 97.5 0.28 6.1E-06 56.1 35.3 157 81-240 18-176 (469)
45 PF13520 AA_permease_2: Amino 97.5 0.29 6.3E-06 54.9 36.8 123 110-232 24-152 (426)
46 TIGR00913 2A0310 amino acid pe 97.4 0.39 8.5E-06 55.0 37.1 153 83-237 2-157 (478)
47 PRK10655 potE putrescine trans 97.4 0.38 8.1E-06 54.4 34.4 155 82-238 5-163 (438)
48 PRK11021 putative transporter; 97.4 0.36 7.7E-06 54.2 39.0 109 86-196 2-111 (410)
49 PRK15132 tyrosine transporter 97.4 0.37 7.9E-06 54.1 35.1 137 92-233 10-152 (403)
50 PRK10483 tryptophan permease; 97.4 0.31 6.6E-06 54.8 31.0 127 102-232 27-158 (414)
51 PRK03356 L-carnitine/gamma-but 97.3 0.49 1.1E-05 54.4 32.2 62 171-235 204-270 (504)
52 COG3949 Uncharacterized membra 97.3 0.078 1.7E-06 56.8 23.7 91 144-234 62-152 (349)
53 TIGR03810 arg_ornith_anti argi 97.3 0.51 1.1E-05 54.0 39.6 157 83-240 1-165 (468)
54 PRK09928 choline transport pro 97.2 0.28 6E-06 58.0 29.1 96 322-417 336-440 (679)
55 TIGR00908 2A0305 ethanolamine 97.2 0.67 1.4E-05 52.5 39.1 98 136-233 59-156 (442)
56 COG0833 LysP Amino acid transp 97.2 0.74 1.6E-05 52.7 32.8 156 82-242 43-204 (541)
57 TIGR00842 bcct choline/carniti 97.1 0.49 1.1E-05 53.7 28.5 33 386-418 356-388 (453)
58 PF02028 BCCT: BCCT family tra 97.1 0.15 3.2E-06 58.4 24.5 98 321-418 318-424 (485)
59 PRK15433 branched-chain amino 97.0 0.71 1.5E-05 52.1 29.1 344 87-488 10-363 (439)
60 TIGR02358 thia_cytX probable h 97.0 0.82 1.8E-05 51.1 36.4 95 147-242 57-156 (386)
61 COG1113 AnsP Gamma-aminobutyra 97.0 0.25 5.3E-06 55.4 24.4 157 82-240 12-169 (462)
62 TIGR00930 2a30 K-Cl cotranspor 97.0 1.8 3.9E-05 54.0 34.4 157 81-238 74-243 (953)
63 TIGR00906 2A0303 cationic amin 97.0 1.3 2.8E-05 52.0 38.8 157 82-240 27-203 (557)
64 PRK10435 cadB lysine/cadaverin 96.9 1.2 2.5E-05 50.6 37.9 85 82-169 4-88 (435)
65 COG1953 FUI1 Cytosine/uracil/t 96.9 1.2 2.6E-05 50.7 35.4 348 147-556 102-490 (497)
66 TIGR00912 2A0309 spore germina 96.9 0.98 2.1E-05 49.6 36.0 147 84-234 2-151 (359)
67 COG0814 SdaC Amino acid permea 96.8 1.3 2.9E-05 49.9 34.2 95 138-233 61-163 (415)
68 PRK10580 proY putative proline 96.6 1.8 3.9E-05 49.3 39.9 155 82-238 8-163 (457)
69 TIGR03428 ureacarb_perm permea 96.6 1.9 4.2E-05 49.3 35.7 104 83-189 13-119 (475)
70 PRK10644 arginine:agmatin anti 96.6 1.9 4E-05 49.0 39.4 156 81-238 6-165 (445)
71 PRK10197 gamma-aminobutyrate t 96.6 2 4.3E-05 48.8 32.9 141 97-239 6-147 (446)
72 PF03845 Spore_permease: Spore 96.5 1.6 3.4E-05 47.3 36.1 150 86-240 3-155 (320)
73 PF02133 Transp_cyt_pur: Perme 96.5 0.24 5.2E-06 56.1 20.7 150 83-239 7-178 (440)
74 COG1292 BetT Choline-glycine b 96.4 1.7 3.6E-05 49.9 26.1 84 147-233 169-268 (537)
75 PRK09664 tryptophan permease T 96.4 2.4 5.2E-05 47.7 33.2 126 102-231 25-156 (415)
76 PRK11357 frlA putative fructos 96.2 3.2 6.8E-05 47.1 37.2 148 82-231 7-157 (445)
77 PRK10836 lysine transporter; P 96.0 4.1 8.8E-05 46.9 35.4 166 71-239 4-171 (489)
78 TIGR00910 2A0307_GadC glutamat 95.5 6.6 0.00014 45.5 33.9 65 103-168 21-86 (507)
79 PF02554 CstA: Carbon starvati 95.5 0.58 1.3E-05 51.3 16.5 140 44-191 5-157 (376)
80 PF00324 AA_permease: Amino ac 95.2 0.34 7.4E-06 55.5 15.1 144 97-241 9-160 (478)
81 PRK15015 carbon starvation pro 93.8 1.4 3.1E-05 51.5 15.2 140 42-189 34-186 (701)
82 TIGR00911 2A0308 L-type amino 92.6 24 0.00052 40.7 35.9 157 82-240 41-207 (501)
83 KOG1286 Amino acid transporter 92.2 2.5 5.4E-05 49.4 14.5 110 83-193 30-141 (554)
84 PRK13629 threonine/serine tran 92.0 26 0.00057 39.8 39.4 143 92-240 26-180 (443)
85 COG1114 BrnQ Branched-chain am 91.6 27 0.00058 39.2 29.5 309 86-453 6-329 (431)
86 KOG2466 Uridine permease/thiam 91.3 8.6 0.00019 43.6 16.6 230 301-555 257-518 (572)
87 TIGR03813 put_Glu_GABA_T putat 90.9 34 0.00073 39.1 31.3 79 103-182 18-96 (474)
88 TIGR00907 2A0304 amino acid pe 90.1 40 0.00087 38.6 32.6 54 137-190 67-124 (482)
89 PTZ00206 amino acid transporte 90.0 41 0.00088 38.6 33.0 135 91-228 66-213 (467)
90 COG0531 PotE Amino acid transp 89.4 42 0.0009 37.8 34.3 108 134-241 62-177 (466)
91 COG1966 CstA Carbon starvation 89.2 9.9 0.00021 43.8 15.2 136 44-187 5-153 (575)
92 PLN02776 prenyltransferase 89.0 37 0.0008 37.3 19.1 30 481-511 115-144 (341)
93 PRK15238 inner membrane transp 85.2 78 0.0017 36.5 34.6 90 82-174 6-96 (496)
94 KOG1304 Amino acid transporter 85.1 73 0.0016 36.3 19.0 89 155-243 131-225 (449)
95 PF01490 Aa_trans: Transmembra 77.6 0.37 8.1E-06 53.5 -2.3 150 83-233 1-160 (409)
96 KOG1303 Amino acid transporter 76.9 1.4E+02 0.0031 34.0 30.9 133 80-214 33-179 (437)
97 KOG1287 Amino acid transporter 73.8 1.8E+02 0.0038 33.6 24.2 90 151-240 81-174 (479)
98 COG0591 PutP Na+/proline sympo 73.2 36 0.00077 39.4 12.3 180 317-503 255-443 (493)
99 PF07857 DUF1632: CEO family ( 64.9 18 0.00039 38.1 6.8 75 480-556 59-139 (254)
100 PLN03074 auxin influx permease 58.8 3.3E+02 0.0072 31.3 30.8 79 149-227 121-200 (473)
101 PRK15419 proline:sodium sympor 56.5 3.1E+02 0.0066 31.7 15.8 57 388-445 330-386 (502)
102 KOG1291 Mn2+ and Fe2+ transpor 49.9 4E+02 0.0086 30.7 14.3 98 109-209 53-150 (503)
103 KOG1289 Amino acid transporter 44.5 5.9E+02 0.013 29.9 25.8 40 150-189 120-159 (550)
104 PRK12869 ubiA protoheme IX far 43.7 4.2E+02 0.0092 28.0 22.2 31 480-510 121-151 (279)
105 PF11368 DUF3169: Protein of u 41.5 97 0.0021 32.3 7.9 19 676-694 173-191 (248)
106 PRK10484 putative transporter; 40.7 2.7E+02 0.0058 32.4 12.1 46 396-441 332-378 (523)
107 COG2056 Predicted permease [Ge 39.1 1.2E+02 0.0026 33.5 8.0 181 392-603 62-255 (444)
108 COG0733 Na+-dependent transpor 36.8 6.9E+02 0.015 28.5 32.4 47 371-417 283-333 (439)
109 PF11654 DUF2665: Protein of u 36.6 65 0.0014 24.8 4.0 19 143-161 28-46 (47)
110 TIGR00819 ydaH p-Aminobenzoyl- 35.7 3.2E+02 0.007 31.8 11.4 21 616-637 297-317 (513)
111 PF03600 CitMHS: Citrate trans 32.7 5.2E+02 0.011 28.0 12.2 66 192-261 219-290 (351)
112 PF01102 Glycophorin_A: Glycop 31.2 75 0.0016 29.6 4.4 35 37-71 60-94 (122)
113 PF11744 ALMT: Aluminium activ 29.6 5.3E+02 0.012 29.1 11.6 48 610-659 137-186 (406)
114 PRK00888 ftsB cell division pr 28.4 43 0.00092 30.3 2.2 27 630-656 4-30 (105)
115 KOG2533 Permease of the major 27.9 4.4E+02 0.0096 30.6 11.0 24 465-488 140-165 (495)
116 PF02652 Lactate_perm: L-lacta 27.5 6.8E+02 0.015 29.3 12.4 25 486-511 202-226 (522)
117 COG2271 UhpC Sugar phosphate p 27.3 8.5E+02 0.018 27.9 12.5 36 352-393 34-70 (448)
118 PF12273 RCR: Chitin synthesis 26.3 55 0.0012 30.6 2.7 19 49-67 7-25 (130)
119 PRK09395 actP acetate permease 25.8 1.1E+03 0.024 27.5 14.5 163 387-556 360-526 (551)
120 TIGR02121 Na_Pro_sym sodium/pr 24.9 1.1E+03 0.023 27.1 13.9 59 388-447 323-381 (487)
121 PRK12895 ubiA prenyltransferas 24.4 8.9E+02 0.019 25.9 13.4 33 478-511 117-150 (286)
122 PF05545 FixQ: Cbb3-type cytoc 23.7 1.3E+02 0.0028 23.0 3.9 31 45-77 10-40 (49)
123 PF08570 DUF1761: Protein of u 22.9 5.9E+02 0.013 23.3 11.7 52 45-103 3-60 (126)
124 PRK12886 ubiA prenyltransferas 22.1 9.8E+02 0.021 25.5 16.9 25 486-510 130-154 (291)
125 KOG4491 Predicted membrane pro 21.7 81 0.0018 32.5 3.0 24 483-506 56-79 (323)
126 PF11151 DUF2929: Protein of u 21.4 2.8E+02 0.0061 22.2 5.4 28 528-555 28-55 (57)
127 PRK13362 protoheme IX farnesyl 20.7 1.1E+03 0.023 25.5 16.4 31 480-510 132-162 (306)
No 1
>KOG2348 consensus Urea transporter [Amino acid transport and metabolism]
Probab=100.00 E-value=6.8e-134 Score=1055.53 Aligned_cols=639 Identities=52% Similarity=0.868 Sum_probs=607.8
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHhcCCCCChHHHHHHHHHHHHhHHHHHHHHHHHH
Q 004956 33 QGHAVLNQGVGYSVILGFGAFFAVFTSFLVWLEKRYVGSRHTSEWFNTAGRNVKTGLIASVIVSQWTWAATILQSSNVAW 112 (722)
Q Consensus 33 ~~~~~l~~~~gy~vvi~~~~yfal~~~~~~~~~~r~~~~~~ssedF~~AgRsv~~~l~a~si~at~~sa~t~lg~~g~ay 112 (722)
|.+|+|+|++||++++|+|+.|+++|++.+|+.|||.++++++|+|.+||||+++++++++++|+|+|++|++.+++.+|
T Consensus 1 ~~~~~L~Qg~GY~IVlGlG~~FA~~mi~vt~llKry~~e~~tsE~FtTA~rsVkTGLiasaVVSsWtW~sTlLtSa~~ay 80 (667)
T KOG2348|consen 1 MTETVLNQGVGYGIVLGLGAAFAIVMILVTYLLKRYVGEVQTSEHFTTASRSVKTGLIASAVVSSWTWASTLLTSAGKAY 80 (667)
T ss_pred CCcccccCCcceEEEEechHHHHHHHHHHHHHHHHHhccccchhhhcccccccccceehhhhhhhhhhhHHHHhhccchh
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004956 113 EYGVSGPFWYASGATIQVLLFGVMAIEIKRKASHAHTVCEIVKARWGTAAHLVFLAFCFLTNIIVTAMLLLGGSAVVNAL 192 (722)
Q Consensus 113 ~~Gi~~~~w~~~G~~l~ill~~~la~~lr~~~~~~~Ti~E~l~~Ryg~~~~~v~~~~~li~~i~~~a~ql~g~a~vl~~l 192 (722)
+||++|++||+.|+++|+++|..+++++||++||+||+.|+++.|||+..|.++.++++.+|++++++.+.|++++++.+
T Consensus 81 qyGV~G~~wYasga~vQIl~FtVlAie~Kr~APnAHT~~EiVkaR~G~~~H~vfL~yal~TNIlVtaMLL~gGSavisal 160 (667)
T KOG2348|consen 81 QYGVSGSFWYASGATVQILLFTVLAIEVKRKAPNAHTILEIVKARFGQASHGVFLFYALATNILVTAMLLLGGSAVISAL 160 (667)
T ss_pred hhcccchhhhhccchhhhHHHHHHHHhhhhcCCCcchhhhhhHhhcCcccceEEEhhhhhhhHHHHHHHHhCchhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCChhHHHHHHHhHhhhHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCChHHHHHHHHHhhhhcccCCCC
Q 004956 193 TGVNIYAASFLIPLGVIVYTLAGGLKATFLASYIHSVIVHVVLVIFVYLVYTASSELGSPSVMYNRLVEVASKSRICQEP 272 (722)
Q Consensus 193 ~Gi~~~~~~il~~~iv~iYT~~GGlrav~~TD~iQ~vi~li~~li~~~~v~~~~~~~GG~~~l~~~L~~~~~~~~~~~~~ 272 (722)
||||..++++++|+.|++||++||+||+++||++|+++++++++++.+.+|.+++++|+|++++|.+.|..+.
T Consensus 161 TGmn~vAa~FLlPlGVvvYTl~GGlKaTFLtdy~HtvIv~iillvf~f~vYtss~~iGSp~kvYDllke~~~~------- 233 (667)
T KOG2348|consen 161 TGMNTVAACFLLPLGVVVYTLFGGLKATFLTDYTHTVIVYIILLVFLFVVYTSSKHIGSPGKVYDLLKEASKT------- 233 (667)
T ss_pred ccchhhhhhheeeeeEEEEEecCcchhhhhhhhhhhhHHHHHHHHHHHHhhhcccccCCcHHHHHHHHHHHhc-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred CCCCCCCCCCCCCCCCCcchhhhcchhhHHHHHHHHHhhcccccCcceehhheeeCChhhhHHHHHHHHHHHHHHHHHHH
Q 004956 273 VSHAGQSCGPVNGNYKGSFLTILSSGGLVFGIINIVGNFGTVFVDNGYWVSAIAARPSSTHKGYLLGGLVWFAVPFSLAT 352 (722)
Q Consensus 273 ~~~~~~~~~P~~~~~~gs~~t~~s~~glifg~~~il~~fg~~~~dq~~~QR~~aAk~~~a~k~~~l~~~l~~~ip~~~~~ 352 (722)
+|.+||.+|+|+||.|..+.+|++++++|+||++|+|++||||+++|||.++.|+|.+||+.||.+||.+.+
T Consensus 234 --------~Pv~Gn~qGsYlTm~s~~~~i~~iinliGnFgTVFvDngYw~kAIaA~PasalkgY~lGGLaWfaVP~~~at 305 (667)
T KOG2348|consen 234 --------HPVDGNYQGSYLTMTSRDAAIFGIINLIGNFGTVFVDNGYWQKAIAAKPASALKGYFLGGLAWFAVPWLMAT 305 (667)
T ss_pred --------CCCCCcccceEEEEEccCceEEEEEEeccCceeEEEcCchhHHHhccCchhhccchhhcchHHHhHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcC---------CCCccccCCCCchHHHHHHhhhhHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhh
Q 004956 353 SLGLGALALDL---------PLTETEASHGLVPPATAIALMGKGGSILLLTMLFMAVTSAGSSELIAVSSLCTYDIYRTY 423 (722)
Q Consensus 353 ~iGl~a~al~~---------~l~~~~~~~~~v~p~~~~~llp~~l~gl~l~~i~aA~~ST~ss~l~a~Ssi~t~DIy~~~ 423 (722)
.+|+.+.++++ +++..|++.++++|+.+..+|++.++.+.+.++|||++|..|++++++||++||||||.|
T Consensus 306 tmgL~~Lalen~p~fptyPdp~ss~q~s~Glvlp~aaiAlMGk~Ga~a~llmlFMAvTSA~SaELIAvSSvfTYDIYr~Y 385 (667)
T KOG2348|consen 306 TMGLSCLALENNPVFPTYPDPVSSKQVSEGLVLPYAAIALMGKNGAAAGLLMLFMAVTSATSAELIAVSSVFTYDIYRNY 385 (667)
T ss_pred HhhhhhheeccCCCCCCCCCccchhhhccCCCChHHHHHHhcccchHHHHHHHHHHHhcccchhheeehhhhehHHHHhh
Confidence 99999999972 366678899999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcchhhHhhhHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHhhhHHHhhhhhccCCCchhhHHHHHHHHHH
Q 004956 424 INPDASGEKILKVSRAVILGFGCFMGFLAVILNKAGVSLGWMYLAMGVLIGSAVLPIAFMLLWRKANAIGAIAGTITGCL 503 (722)
Q Consensus 424 i~p~as~k~ll~vsRi~vvv~~i~~~~~a~~~~~~~i~l~~l~~~~g~~~~~~~~plllgl~Wkr~n~~gAi~g~i~G~~ 503 (722)
+||++++||+++.+|.+++++++.+..+|..+++.+++++|++.++|++++|.+.|+.+.++|||+|+.|++.|...|.+
T Consensus 386 i~PrAsGkell~~sh~avi~Fg~~M~~~av~l~y~gismg~iy~~mGili~~AV~pit~~l~~kkmn~~~~iv~~~lG~i 465 (667)
T KOG2348|consen 386 IRPRASGKELLYTSHVAVIIFGVAMGGLAVGLNYGGISMGWIYLFMGILIGPAVFPITLTLLWKKMNKYGAIVGPPLGSI 465 (667)
T ss_pred cCCccCcceeEEEeeeeeehhHHHHHhHhhhhhhcceeHHHHHHHHHHHhcchhHhHHHHHHHHHhhhhhEeecCcccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhcccccccCCCCCCchhhHHHHHHHHhHhHhhhheecc-cCCCCChhhhhhhhhcccccCCC--CCchh
Q 004956 504 LGIITWLSVTAIEYGRINLDTTGRNAPMLAGNLVSILTGGAVHAVCSLL-WPQNYDWDTTKQITMVEKEKGEL--PVDEF 580 (722)
Q Consensus 504 ~~i~~w~~~~~~~~G~i~~~~~~~~~~~l~g~~vsl~~s~i~~vivSll-tp~~~d~~~~~~~~~~~~~~~~~--~~~~~ 580 (722)
.+++.|+..++..++..++++++.+.|++.||+++++.+.+..++.|++ .|+|+||++++|+..++++...+ .+.|+
T Consensus 466 ~~IitWl~~ak~~y~~~~vdtT~~n~PmlaGNlv~llspaiyi~ilsy~f~pqn~D~n~l~e~~~v~~~a~~~E~~d~e~ 545 (667)
T KOG2348|consen 466 TGIITWLVSAKKQYKNLTVDTTGLNTPMLAGNLVGLLSPAIYIVILSYFFPPQNYDWNNLNEIFVVGDDAEAEEIVDAEQ 545 (667)
T ss_pred hhhhhhhhhhhhccceeEEecccCCCccccchhhhhhchhhheeeeeEecCCccCchhhhhheEEeccccccchhcchhH
Confidence 9999999999988999999999999999999999999999999999987 58999999999999887654432 23456
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhheeccCcccccC-CCCccchhHHHHHHHHHHHHHhhhheeeccccchHHHHHHHhhc
Q 004956 581 KEEKLMKAKAWIVKWGVGFTVVIALLWPLLTLPAG-EFSLGYFTFWAVVAIAWGTIGSAVIIALPLIESWETIKSVCVGM 659 (722)
Q Consensus 581 ~~~~l~~~~k~~~~~~~~~~~~~~v~~p~~~~~~~-~fs~~~f~~wv~~~~~w~~~~~~~~~~~p~~e~~~~~~~~~~~~ 659 (722)
|+++++|++|+...++++++++++|+||+||||++ ||||+||||||+|.|||.|++++.|++||||||||+|+.++|||
T Consensus 546 ek~kl~Ra~~i~~~~~li~t~~~viiwP~pmygskyIFSk~fF~gWviV~iiW~~~~a~~i~~~PL~E~rd~I~~v~~~m 625 (667)
T KOG2348|consen 546 EKKKLNRALRIGIFVSLIITFAFVIIWPLPMYGSKYIFSKLFFTGWVIVIIIWTFIAAFAITIYPLWESRDTIYYVCKGM 625 (667)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHhhccccccCccceeechhhhHHHHHHHHHHHHHHHheEeeeeeeccccHHHHHHHH
Confidence 77799999999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred cccchhhhhhHHhhhhhhhhhhcCchhh
Q 004956 660 FTNDLLMERVEEINIKLQTIMLAIPEAE 687 (722)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (722)
+.++ .+++.++..++++...++.++.+
T Consensus 626 ~~~~-~~~~~~d~~~~l~v~~~~is~~~ 652 (667)
T KOG2348|consen 626 IGKA-KGPKPNDYVDDLEVVTESISDDD 652 (667)
T ss_pred hhhc-cCCCcccchhhhheeeeecCcch
Confidence 9544 44466666666766666666554
No 2
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=100.00 E-value=1.6e-60 Score=541.81 Aligned_cols=462 Identities=18% Similarity=0.233 Sum_probs=359.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHhcCCCCChHHHHHHHHHHHHhHHHHHHHHHHHHHhCChHHHHHHHH
Q 004956 46 VILGFGAFFAVFTSFLVWLEKRYVGSRHTSEWFNTAGRNVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGPFWYASG 125 (722)
Q Consensus 46 vvi~~~~yfal~~~~~~~~~~r~~~~~~ssedF~~AgRsv~~~l~a~si~at~~sa~t~lg~~g~ay~~Gi~~~~w~~~G 125 (722)
+++.+.+|+++++.++.|..| |++|.|||++|||++|+++.++|+.||++|+++++|.+|.+|++|+++ .|+..|
T Consensus 3 ~~~~~~~y~~~~l~iG~~~~r----~~~s~~df~lagr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~-~~~~~g 77 (487)
T TIGR02121 3 ILITFGVYLIIMLLIGFYAYK----KTTNLSDYVLGGRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSE-LWIAIG 77 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHhc----ccCchHHHeeeCCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHH-HHHHHH
Confidence 345578899988887777443 467899999999999999999999999999999999999999999987 688888
Q ss_pred HHHHHHH-HHHHHHHHHhh---cCCCCCHHHHHHHhhCchh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhH
Q 004956 126 ATIQVLL-FGVMAIEIKRK---ASHAHTVCEIVKARWGTAA---HLVFLAFCFLTNIIVTAMLLLGGSAVVNALTGVNIY 198 (722)
Q Consensus 126 ~~l~ill-~~~la~~lr~~---~~~~~Ti~E~l~~Ryg~~~---~~v~~~~~li~~i~~~a~ql~g~a~vl~~l~Gi~~~ 198 (722)
..++.++ +.++++|+|+. +++.+|++|++++|||++. |.+.+++.++..+++++.|+++++.+++.++|+|++
T Consensus 78 ~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~~Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~gi~~~ 157 (487)
T TIGR02121 78 LTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFENRFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFGLDYK 157 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHH
Confidence 7776554 55778888852 5799999999999999654 445666667777889999999999999999999999
Q ss_pred HHHHHHhHhhhHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCChHHHHHHHHHhhhhcccCCCCCCCCCC
Q 004956 199 AASFLIPLGVIVYTLAGGLKATFLASYIHSVIVHVVLVIFVYLVYTASSELGSPSVMYNRLVEVASKSRICQEPVSHAGQ 278 (722)
Q Consensus 199 ~~~il~~~iv~iYT~~GGlrav~~TD~iQ~vi~li~~li~~~~v~~~~~~~GG~~~l~~~L~~~~~~~~~~~~~~~~~~~ 278 (722)
.++++..+++++||.+||+||+++||.+|+++|+++.+++.+.++ .+.||++++.+.+.+.+++..
T Consensus 158 ~~iii~~~i~~~Yt~~GGl~av~~TD~iQ~~i~~~~~~~v~~~~~---~~~GG~~~~~~~l~~~~~~~~----------- 223 (487)
T TIGR02121 158 TGLLIGALIIVIYTFFGGFLAVSWTDFVQGLLMFFALVLVPIVAL---FNLGGFGETLSAVAAINPHLL----------- 223 (487)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHcCCHHHHHHHHHhhCcccc-----------
Confidence 999999999999999999999999999999999999887777654 457999999988876544321
Q ss_pred CCCCCCCCCCCcchhhhcchhhHHHHHHHHHhhcccccCcceehhheeeCC-hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004956 279 SCGPVNGNYKGSFLTILSSGGLVFGIINIVGNFGTVFVDNGYWVSAIAARP-SSTHKGYLLGGLVWFAVPFSLATSLGLG 357 (722)
Q Consensus 279 ~~~P~~~~~~gs~~t~~s~~glifg~~~il~~fg~~~~dq~~~QR~~aAk~-~~a~k~~~l~~~l~~~ip~~~~~~iGl~ 357 (722)
++..+. ++.. .+..+.+ .++. +.+|+++||++++|| ++++|+..++... ..+..+....+|+.
T Consensus 224 --~~~~~~---~~~~------~~~~~~~---~~g~-~~~p~~~qR~~aaks~k~~~~~~~~~~~~-~~~~~~~~~~~g~~ 287 (487)
T TIGR02121 224 --DMFKGA---SVIA------IISLLAW---GLGY-FGQPHIIVRFMAIRSHKELPKARRIGMSW-MILSLLGAIAVGLT 287 (487)
T ss_pred --CCCCCC---CHHH------HHHHHHH---HHHh-ccchHHHHHHHhcCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 221111 1111 1111112 2222 257999999999998 5678887776543 32333334457777
Q ss_pred HHHhcCCCCc-cccCCCCchHHHHHHhhhhHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhcCCCCCcchhhHh
Q 004956 358 ALALDLPLTE-TEASHGLVPPATAIALMGKGGSILLLTMLFMAVTSAGSSELIAVSSLCTYDIYRTYINPDASGEKILKV 436 (722)
Q Consensus 358 a~al~~~l~~-~~~~~~~v~p~~~~~llp~~l~gl~l~~i~aA~~ST~ss~l~a~Ssi~t~DIy~~~i~p~as~k~ll~v 436 (722)
+..+.++.++ .+.++|.++|.++.+++||++.+++++++++|.|||+||.+|+.|+++++|+||+++||+++|||++++
T Consensus 288 g~~~~~~~p~~~~~~~d~~~~~~~~~~~p~~l~gl~~a~ilaA~mST~~s~l~s~ss~~~~Diy~~~~~~~~s~~~~l~v 367 (487)
T TIGR02121 288 GIAYFNKNPHVELVDRETIFIVLSQILFHPWIAGILLAAILAAIMSTISSQLLVSSSALTEDFYKAFFKREASQKELVMV 367 (487)
T ss_pred HHHHhccCccccCCCcchhHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHH
Confidence 7776544221 124689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHhhhHHHhhhhhccCCCchhhHHHHHHHHHHHHHHHHHHhhhhc
Q 004956 437 SRAVILGFGCFMGFLAVILNKAGVSLGWMYLAMGVLIGSAVLPIAFMLLWRKANAIGAIAGTITGCLLGIITWLSVTAIE 516 (722)
Q Consensus 437 sRi~vvv~~i~~~~~a~~~~~~~i~l~~l~~~~g~~~~~~~~plllgl~Wkr~n~~gAi~g~i~G~~~~i~~w~~~~~~~ 516 (722)
+|++++++++++..+++. ..+..++.....++...+.+.||+++++||||.|++|+++|+++|+++. ..|...
T Consensus 368 ~R~~~v~~~~~~~~~a~~--~~~~i~~l~~~~~~~~~~~~~p~~llgl~w~r~t~~ga~~g~i~G~~~~-~~~~~~---- 440 (487)
T TIGR02121 368 GRLSVLVIAIIAIILAMN--PNSSILNLVGYAWAGFGAAFGPVVLFSLYWKRMTRNGALAGMIIGAVTV-IVWISK---- 440 (487)
T ss_pred HHHHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH-HHHHHH----
Confidence 999999999999998863 2222144444444444556667788999999999999999999999754 345321
Q ss_pred ccccccCCCCCCchhhHHHHHHHHhHhHhhhheecccCCCCC
Q 004956 517 YGRINLDTTGRNAPMLAGNLVSILTGGAVHAVCSLLWPQNYD 558 (722)
Q Consensus 517 ~G~i~~~~~~~~~~~l~g~~vsl~~s~i~~vivSlltp~~~d 558 (722)
.+. ...+...++++.+|.++++++|+++|++.+
T Consensus 441 ~~~---------~~~~~~~~~g~~~~~~~~~~~s~~t~~~~~ 473 (487)
T TIGR02121 441 LGG---------SFGLYEIVPGFIISSIVIVVVSKLTKAPPA 473 (487)
T ss_pred hcc---------ccchhHhHHHHHHHHHHHHHHHhccCCCCH
Confidence 111 111233345777888899999999888655
No 3
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=100.00 E-value=2.2e-60 Score=542.45 Aligned_cols=460 Identities=18% Similarity=0.195 Sum_probs=347.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHhcCCCCChHHHHHHHHHHHHhHHHHHHHHHHHHHhCChHHHHHHHHH
Q 004956 47 ILGFGAFFAVFTSFLVWLEKRYVGSRHTSEWFNTAGRNVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGPFWYASGA 126 (722)
Q Consensus 47 vi~~~~yfal~~~~~~~~~~r~~~~~~ssedF~~AgRsv~~~l~a~si~at~~sa~t~lg~~g~ay~~Gi~~~~w~~~G~ 126 (722)
++.+++|+.+++.++.|.. ||++|.|||++|||++|+|++++|+.||++|+++++|.+|.+|++|+++ .|+.++.
T Consensus 8 ~~~~~~y~~~~l~iG~~~~----r~~~s~~dy~lagr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~-~~~~~~~ 82 (502)
T PRK15419 8 LVTFCVYIFGMILIGFIAW----RSTKNFDDYILGGRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISE-SWIAIGL 82 (502)
T ss_pred HHHHHHHHHHHHHHHHHHh----hcCCChhHheeeCCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHH-HHHHHHH
Confidence 3446788888887777643 2577899999999999999999999999999999999999999999997 7888887
Q ss_pred HHHHHH-HHHHHHHHHh---hcCCCCCHHHHHHHhhCchh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHH
Q 004956 127 TIQVLL-FGVMAIEIKR---KASHAHTVCEIVKARWGTAA---HLVFLAFCFLTNIIVTAMLLLGGSAVVNALTGVNIYA 199 (722)
Q Consensus 127 ~l~ill-~~~la~~lr~---~~~~~~Ti~E~l~~Ryg~~~---~~v~~~~~li~~i~~~a~ql~g~a~vl~~l~Gi~~~~ 199 (722)
.++.++ +.++++++|+ |+.+.+|+||++++|||++. |.+.+++.++..+++++.|+++++.+++.++|+|++.
T Consensus 83 ~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l~~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~gi~~~~ 162 (502)
T PRK15419 83 TLGAWINWKLVAGRLRVHTEYNNNALTLPDYFTGRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFGMSYET 162 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCceeHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 777544 4456777664 34689999999999999754 4456666777788999999999999999999999999
Q ss_pred HHHHHhHhhhHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCChHHHHHHHHHhhhhcccCCCCCCCCCCC
Q 004956 200 ASFLIPLGVIVYTLAGGLKATFLASYIHSVIVHVVLVIFVYLVYTASSELGSPSVMYNRLVEVASKSRICQEPVSHAGQS 279 (722)
Q Consensus 200 ~~il~~~iv~iYT~~GGlrav~~TD~iQ~vi~li~~li~~~~v~~~~~~~GG~~~l~~~L~~~~~~~~~~~~~~~~~~~~ 279 (722)
++++.++++++||.+||+||+++||.+|+++|+++.+++.+.++ .+.||++++.+.+.+.+++..
T Consensus 163 ~iii~~~iv~iYt~~GGl~aV~~TD~iQ~~imi~g~i~~~~~~~---~~~GG~~~~~~~~~~~~~~~~------------ 227 (502)
T PRK15419 163 ALWAGAAATILYTFIGGFLAVSWTDTVQASLMIFALILTPVIVI---ISVGGFGDSLEVIKQKSIENV------------ 227 (502)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHcCCHHHHHHHHHhcCcccc------------
Confidence 99999999999999999999999999999999998887776654 346999999887755433210
Q ss_pred CCCCCCCCCCcchhhhcchhhHHHHHHHHHhhcccccCcceehhheeeCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004956 280 CGPVNGNYKGSFLTILSSGGLVFGIINIVGNFGTVFVDNGYWVSAIAARPSSTHKGYLLGGLVWFAVPFSLATSLGLGAL 359 (722)
Q Consensus 280 ~~P~~~~~~gs~~t~~s~~glifg~~~il~~fg~~~~dq~~~QR~~aAk~~~a~k~~~l~~~l~~~ip~~~~~~iGl~a~ 359 (722)
++..+ ..+... .+.. ...++. .++||++||++++||+++.|........|..+.......+|+.++
T Consensus 228 -~~~~~---~~~~~~-------~~~~--~~~~g~-~~~p~~~qR~~aak~~~~~~~a~~~~~~~~~~~~~~~~~ig~~~~ 293 (502)
T PRK15419 228 -DMLKG---LNFVAI-------ISLM--GWGLGY-FGQPHILARFMAADSHHSIVHARRISMTWMILCLAGAVAVGFFGI 293 (502)
T ss_pred -CcccC---CCHHHH-------HHHH--HHHHHH-cCChHHHHhheecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 111111 1111 112233 257999999999998643222211122222222223345777777
Q ss_pred HhcCCCCc----cccCCCCchHHHHHHhhhhHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhcCCCCCcchhhH
Q 004956 360 ALDLPLTE----TEASHGLVPPATAIALMGKGGSILLLTMLFMAVTSAGSSELIAVSSLCTYDIYRTYINPDASGEKILK 435 (722)
Q Consensus 360 al~~~l~~----~~~~~~~v~p~~~~~llp~~l~gl~l~~i~aA~~ST~ss~l~a~Ssi~t~DIy~~~i~p~as~k~ll~ 435 (722)
.+.+..+. .+.++|+++|+++.+.+|+++.|++++++++|.|||+||.+++.|+++++|+||+++||+++|||.++
T Consensus 294 ~~~~~~p~~~~~~~~~~d~~~~~l~~~~lp~~l~gl~~a~ilAA~mST~~s~l~a~ss~~~~Diy~~~~~~~~s~~~~l~ 373 (502)
T PRK15419 294 AYFNEHPAVAGAVNQNAERVFIELAQILFNPWIAGILLSAILAAVMSTLSCQLLVCSSAITEDLYKAFLRKHASQKELVW 373 (502)
T ss_pred HHhccCcccccccCCCcchHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHH
Confidence 66543211 12468999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHhhhHHHhhhhhccCCCchhhHHHHHHHHHHHHHHHHHHhhhh
Q 004956 436 VSRAVILGFGCFMGFLAVILNKAGVSLGWMYLAMGVLIGSAVLPIAFMLLWRKANAIGAIAGTITGCLLGIITWLSVTAI 515 (722)
Q Consensus 436 vsRi~vvv~~i~~~~~a~~~~~~~i~l~~l~~~~g~~~~~~~~plllgl~Wkr~n~~gAi~g~i~G~~~~i~~w~~~~~~ 515 (722)
++|+.++++++++..++.. ..+.....+...++...+.+.|++++++||||.|++|+++|+++|.++.+ .|...
T Consensus 374 ~~Ri~~v~~~~~a~~~a~~--~~~~i~~l~~~~~~~~~~~~~p~~llgl~wkr~t~~ga~~g~i~G~~~~~-~~~~~--- 447 (502)
T PRK15419 374 VGRVMVLVVALVAIALAAN--PENRVLGLVSYAWAGFGAAFGPVVLFSVMWSRMTRNGALAGMIIGALTVI-VWKQF--- 447 (502)
T ss_pred HHHHHHHHHHHHHHHHHHC--CcccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH-HHHHh---
Confidence 9999999999999988863 22321333333334433445556789999999999999999999997543 34321
Q ss_pred cccccccCCCCCCchhhHHHHHHHHhHhHhhhheecccCCCCC
Q 004956 516 EYGRINLDTTGRNAPMLAGNLVSILTGGAVHAVCSLLWPQNYD 558 (722)
Q Consensus 516 ~~G~i~~~~~~~~~~~l~g~~vsl~~s~i~~vivSlltp~~~d 558 (722)
+. .+.+ ..+.+++++.++++++|++||++.+
T Consensus 448 --~~------~~~~----~~~~~~~~~~~~~v~~sl~t~~~~~ 478 (502)
T PRK15419 448 --GW------LGLY----EIIPGFIFGSIGIVVFSLLGKAPSA 478 (502)
T ss_pred --hh------cchh----HhHHHHHHHHHHHHHHHhccCCCCH
Confidence 11 0122 2344678888899999999887543
No 4
>PRK10484 putative transporter; Provisional
Probab=100.00 E-value=3.5e-60 Score=543.39 Aligned_cols=465 Identities=19% Similarity=0.223 Sum_probs=349.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCChhhHHhcCCCCChHHHHHHHHHHHHhHHHHHHHHHHHHHhCChHHHHHHHHHHH
Q 004956 49 GFGAFFAVFTSFLVWLEKRYVGSRHTSEWFNTAGRNVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGPFWYASGATI 128 (722)
Q Consensus 49 ~~~~yfal~~~~~~~~~~r~~~~~~ssedF~~AgRsv~~~l~a~si~at~~sa~t~lg~~g~ay~~Gi~~~~w~~~G~~l 128 (722)
.+.+|.+++..++.+..|| ++.+|.|||++|||++|+|+++.|+.|||+|+.+++|.+|.+|++|+++..| ..+..+
T Consensus 6 ~~~~~~~~~~~ig~~~~r~--~~~~s~~dyflagR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~~~~-~~~~~~ 82 (523)
T PRK10484 6 SFLGFTLLVAVISWWKTRK--TDTSSSDGYFLAGRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSVMAW-EVTAAI 82 (523)
T ss_pred HHHHHHHHHHHHHHHHHcc--CCCCCchhheecCCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHHHHH-HHHHHH
Confidence 3567777666555553322 2347899999999999999999999999999999999999999999987334 344445
Q ss_pred HHHH-HHHHHHHHHhhcCCCCCHHHHHHHhhCchhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHH------hhCChhHHH
Q 004956 129 QVLL-FGVMAIEIKRKASHAHTVCEIVKARWGTAAHLVFLAFCFLTNI-IVTAMLLLGGSAVVNA------LTGVNIYAA 200 (722)
Q Consensus 129 ~ill-~~~la~~lr~~~~~~~Ti~E~l~~Ryg~~~~~v~~~~~li~~i-~~~a~ql~g~a~vl~~------l~Gi~~~~~ 200 (722)
+.++ ..++++|+|| .+..|+||++|+|||++.|.+.+.+.++..+ .+.+.++++++..++. ++|+|+..+
T Consensus 83 ~~~~~~~~~~p~~~r--~~~~T~~e~l~~Ryg~~~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~~~~~gi~~~~~ 160 (523)
T PRK10484 83 ALIILALIFLPRYLK--SGITTIPDFLEERYDKTTRRIVSILFLIGYVVSFLPIVLYSGALALNSLFHVSELLGISYGAA 160 (523)
T ss_pred HHHHHHHHHHHHHHh--cCCccHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHH
Confidence 5443 3456777776 5899999999999999988777666655544 4577888888877765 468888877
Q ss_pred HHH----HhHhhhHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC--ChHHHHHHHHHhhhhcccCCCCCC
Q 004956 201 SFL----IPLGVIVYTLAGGLKATFLASYIHSVIVHVVLVIFVYLVYTASSELG--SPSVMYNRLVEVASKSRICQEPVS 274 (722)
Q Consensus 201 ~il----~~~iv~iYT~~GGlrav~~TD~iQ~vi~li~~li~~~~v~~~~~~~G--G~~~l~~~L~~~~~~~~~~~~~~~ 274 (722)
+++ +++++++||..||+||+++||.+|+++|+++.+++.+.++. +.| |..+.++.+.+..++..
T Consensus 161 ~~~~~~~~~~i~~~Yt~~GGl~aV~~TD~iQ~vim~i~~iiv~~~~l~---~~g~g~~~~~~~~~~~~~p~~~------- 230 (523)
T PRK10484 161 IWLLVWLIGIIGAIYAVFGGLKAVAVSDTINGIGLLIGGLLVPVFGLI---ALGDGSFMQGLEQLTTVHPEKL------- 230 (523)
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCccHHhHHHHHhhcCchhh-------
Confidence 654 36677999999999999999999999999988777655432 234 34444444444333211
Q ss_pred CCCCCCCCCCCCC-CCcchhhhcchhhHHHHHHHHHhhcccccCcceehhheeeCC-hhhhHHHHHHHHHHHHHHHHHHH
Q 004956 275 HAGQSCGPVNGNY-KGSFLTILSSGGLVFGIINIVGNFGTVFVDNGYWVSAIAARP-SSTHKGYLLGGLVWFAVPFSLAT 352 (722)
Q Consensus 275 ~~~~~~~P~~~~~-~gs~~t~~s~~glifg~~~il~~fg~~~~dq~~~QR~~aAk~-~~a~k~~~l~~~l~~~ip~~~~~ 352 (722)
++..+.. ...+.+ +..+. .+..++..+.||+++||++++|| ++++|+.++++++++.+|+.. .
T Consensus 231 ------~~~~~~~~~~~~~~------~~~~~--~~~~~~~~~~~q~~~qR~~aak~~k~a~~~~~~~~~~~~~~~~~~-~ 295 (523)
T PRK10484 231 ------NSIGGATDPVPFPT------LFTGL--ILVNLFYWCTNQSIVQRALGAKNLAEGQKGALLAAFFKLLGPLIL-V 295 (523)
T ss_pred ------cccCCCCCCCcHHH------HHHHH--HHHHHHHHhCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 1111111 111111 11221 11223333479999999999998 578999999988887777644 4
Q ss_pred HHHHHHHHhcCCCCccccCCCCchHHHHHHhhhhHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhcCCCCCcch
Q 004956 353 SLGLGALALDLPLTETEASHGLVPPATAIALMGKGGSILLLTMLFMAVTSAGSSELIAVSSLCTYDIYRTYINPDASGEK 432 (722)
Q Consensus 353 ~iGl~a~al~~~l~~~~~~~~~v~p~~~~~llp~~l~gl~l~~i~aA~~ST~ss~l~a~Ssi~t~DIy~~~i~p~as~k~ 432 (722)
.+|+.++.++++. ..++|.++|.++.+.+|+++.|+++++++||.|||+||.+|+.|+++++|+||+++||+++|||
T Consensus 296 ~~G~~a~~~~p~~---~~~~d~~~p~~~~~~lp~~l~Gl~~a~ilAA~mST~~s~l~s~st~~t~Diy~~~~~~~~s~~~ 372 (523)
T PRK10484 296 LPGIIAFHLYGDG---LPNADMAYPTLVNDVLPVPLVGFFAAVLFGAILSTFNGFLNSASTLFSLDIYKPIINPNASEKQ 372 (523)
T ss_pred HHHHHHHHHhccc---cCChhhHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCHHH
Confidence 5899999987651 2368899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhhHHHHHHHHHHHHHHHHhc-ccccHHHHHHHHHHHHHhhhHHHhhhhhccCCCchhhHHHHHHHHHHHHHHHHHH
Q 004956 433 ILKVSRAVILGFGCFMGFLAVILN-KAGVSLGWMYLAMGVLIGSAVLPIAFMLLWRKANAIGAIAGTITGCLLGIITWLS 511 (722)
Q Consensus 433 ll~vsRi~vvv~~i~~~~~a~~~~-~~~i~l~~l~~~~g~~~~~~~~plllgl~Wkr~n~~gAi~g~i~G~~~~i~~w~~ 511 (722)
+++++|+.++++++++..++.... ..+....++....+...+|+++|+++|+||||+|++|+++|+++|+++.+. |..
T Consensus 373 ~l~v~Ri~~vv~~ii~~~~a~~~~~~~~~i~~~~~~~~~~~~~pl~~~~llgl~wkr~n~~ga~~g~i~G~~~~~~-~~~ 451 (523)
T PRK10484 373 LVKVGKKFGFVLAIISMIVAPLIANAPQGLYSYLQQLNGIYNVPILAIIIVGFFTKRVPALAAKVALGFGIILYII-INF 451 (523)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHhCcCChHHHHHHHHHHHHHHHH-HHH
Confidence 999999999999999999886542 222225556566677778889999999999999999999999999975433 321
Q ss_pred hhhhcccccccCCCCCCchhhHHHHHHHHhHhHhhhheecccCCCCCh
Q 004956 512 VTAIEYGRINLDTTGRNAPMLAGNLVSILTGGAVHAVCSLLWPQNYDW 559 (722)
Q Consensus 512 ~~~~~~G~i~~~~~~~~~~~l~g~~vsl~~s~i~~vivSlltp~~~d~ 559 (722)
.. + ...+.++...+++.+|.++++++|+++|++.|+
T Consensus 452 ~~----~--------~~~~~~~~~~~~~~~~~~v~v~vsl~~~~~~~~ 487 (523)
T PRK10484 452 VL----K--------FDIHFLYVLAILFVINVVVMLIIGKIKPRETPF 487 (523)
T ss_pred Hh----C--------CCccHHHHHHHHHHHHHHHHHHHhcccCCCCch
Confidence 11 0 011234556678889999999999999887553
No 5
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=100.00 E-value=1.4e-59 Score=533.96 Aligned_cols=465 Identities=19% Similarity=0.259 Sum_probs=358.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHhcCCCCChHHHHHHHHHHHHhHHHHHHHHHHHHHhCChHHHHHH
Q 004956 44 YSVILGFGAFFAVFTSFLVWLEKRYVGSRHTSEWFNTAGRNVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGPFWYA 123 (722)
Q Consensus 44 y~vvi~~~~yfal~~~~~~~~~~r~~~~~~ssedF~~AgRsv~~~l~a~si~at~~sa~t~lg~~g~ay~~Gi~~~~w~~ 123 (722)
|.+++.+.+|+++++.++.|..|| .|+.++.|||++|||++|+++.+.+++|||+|+++++|.+|.+|++|+++ .|.+
T Consensus 3 ~~~~~~i~~y~~~~~~ig~~~~r~-~~~~~~~~dy~~agr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~-~~~~ 80 (483)
T PRK09442 3 LEVILPLVIYLVLVFGISVYAYRK-RQAGDFLNEYFLGNRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGW-VLLA 80 (483)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhc-ccCCCcccceeeeCCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHH-HHHH
Confidence 344555689999888877775443 33445679999999999999999999999999999999999999999986 4544
Q ss_pred HHH-HHHHHHHHHHHHHHHh--hcCCCCCHHHHHHHhhCchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHH
Q 004956 124 SGA-TIQVLLFGVMAIEIKR--KASHAHTVCEIVKARWGTAA-HLVFLAFCFLTNIIVTAMLLLGGSAVVNALTGVNIYA 199 (722)
Q Consensus 124 ~G~-~l~ill~~~la~~lr~--~~~~~~Ti~E~l~~Ryg~~~-~~v~~~~~li~~i~~~a~ql~g~a~vl~~l~Gi~~~~ 199 (722)
.+. ....+.+.++++++++ |+.+.+|++|++++|||++. +.+..+..++..+++++.|+.+++.+++.++|+|++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~T~~e~l~~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~gi~~~~ 160 (483)
T PRK09442 81 MIQVPTVWLSLGILGKKFAILARKYNAVTLNDMLRARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATGISYET 160 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 332 2222334456666633 34799999999999999775 5666776777888899999999999999999999999
Q ss_pred HHHHHhHhhhHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCChHHHHHHHHHhhhhcccCCCCCCCCCCC
Q 004956 200 ASFLIPLGVIVYTLAGGLKATFLASYIHSVIVHVVLVIFVYLVYTASSELGSPSVMYNRLVEVASKSRICQEPVSHAGQS 279 (722)
Q Consensus 200 ~~il~~~iv~iYT~~GGlrav~~TD~iQ~vi~li~~li~~~~v~~~~~~~GG~~~l~~~L~~~~~~~~~~~~~~~~~~~~ 279 (722)
++++.++++++||.+||+|++++||.+|+++++++++++.+..+ .+.||++++.+.+++.+++..
T Consensus 161 ~iii~~~iv~iYt~~GGl~av~~TD~iQ~~i~~~~~~vi~~~~~---~~~gG~~~~~~~l~~~~~~~~------------ 225 (483)
T PRK09442 161 GLLIFGITVALYTAFGGFRAVVLTDALQGIVMLVGTVILLIGVI---HAGGGLENAVQTLQAIDPQLV------------ 225 (483)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCHHHHHHHHHhcCcccc------------
Confidence 99999999999999999999999999999999999888776554 457999999998876554421
Q ss_pred CCCCCCCCCCcchhhhcchhhHHHHHHHHHhhcccccCcceehhheeeCC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004956 280 CGPVNGNYKGSFLTILSSGGLVFGIINIVGNFGTVFVDNGYWVSAIAARP-SSTHKGYLLGGLVWFAVPFSLATSLGLGA 358 (722)
Q Consensus 280 ~~P~~~~~~gs~~t~~s~~glifg~~~il~~fg~~~~dq~~~QR~~aAk~-~~a~k~~~l~~~l~~~ip~~~~~~iGl~a 358 (722)
+|...+ ++.+.. ..+.. ++...++.. +.|+++||++++|| ++++|+.+++++++..+.+ ....+|+.+
T Consensus 226 -~~~~~~---~~~~~~----~~~~~-~~~~~~g~~-~~p~~~qR~~aaks~~~a~~~~~~~~~~~~~~~~-~~~~~G~~~ 294 (483)
T PRK09442 226 -TPQGAD---DILSPP----FMTSF-WILVCFGVI-GLPHTAVRCMSYKDSKALHRGIIIGTIVVGFLMF-GMHLAGALG 294 (483)
T ss_pred -CCCCCC---ccccHH----HHHHH-HHHHHHHHh-CCCHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 232111 111110 01110 111233333 56889999999998 5789999998876655443 345689998
Q ss_pred HHhcCCCCccccCCCCchHHHHHHhhhhHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhcCCC--CCcchhhHh
Q 004956 359 LALDLPLTETEASHGLVPPATAIALMGKGGSILLLTMLFMAVTSAGSSELIAVSSLCTYDIYRTYINPD--ASGEKILKV 436 (722)
Q Consensus 359 ~al~~~l~~~~~~~~~v~p~~~~~llp~~l~gl~l~~i~aA~~ST~ss~l~a~Ssi~t~DIy~~~i~p~--as~k~ll~v 436 (722)
+++.|+. .++|.++|.++.+.+|+++.+++++++++|+|||+||.+++.|++++||+|++ ++|+ ++|||.+++
T Consensus 295 ~~~~p~~----~~~~~~~p~l~~~~lp~~l~gl~~a~~~aA~mST~~s~l~~~ss~~~~Di~~~-~~~~~~~s~~~~~~v 369 (483)
T PRK09442 295 RAVLPDL----TVPDKVIPTLMLKVLPPFAAGIFLAAPMAAIMSTVDSQLLQSSSTIIKDLYLN-IRPDQIANEKKLKRI 369 (483)
T ss_pred HHHcCCC----CCccchHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCCCCChHHHHHH
Confidence 8887653 25789999999999999999999999999999999999999999999999999 7888 899999999
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccHHHHHH-HHHHHHHhhhHHHhhhhhccCCCchhhHHHHHHHHHHHHHHHHHHhhhh
Q 004956 437 SRAVILGFGCFMGFLAVILNKAGVSLGWMY-LAMGVLIGSAVLPIAFMLLWRKANAIGAIAGTITGCLLGIITWLSVTAI 515 (722)
Q Consensus 437 sRi~vvv~~i~~~~~a~~~~~~~i~l~~l~-~~~g~~~~~~~~plllgl~Wkr~n~~gAi~g~i~G~~~~i~~w~~~~~~ 515 (722)
+|+.++++++++..+++.. .+. +.++. ..++...+++++|+++++||||.|++||++|+++|+++.+. |.....
T Consensus 370 ~r~~~~~~~~~~~~~a~~~--~~~-~~~~~~~~~~~~~~~~~~p~~lgl~w~r~~~~ga~~~~i~G~~~~~~-~~~~~~- 444 (483)
T PRK09442 370 SLIITLILGLLVLLAALKP--PDM-IIWLNLFAFGGLEAVFLWPIVLGLYWERANATGALASMIVGLVSYLL-LATFGI- 444 (483)
T ss_pred HHHHHHHHHHHHHHHHhCC--chH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH-HHHhcc-
Confidence 9999999999999999642 233 22222 33445567889999999999999999999999999965433 322110
Q ss_pred cccccccCCCCCCchhhHHHHHHHHhHhHhhhheecccCCCCC
Q 004956 516 EYGRINLDTTGRNAPMLAGNLVSILTGGAVHAVCSLLWPQNYD 558 (722)
Q Consensus 516 ~~G~i~~~~~~~~~~~l~g~~vsl~~s~i~~vivSlltp~~~d 558 (722)
+. ...++ .++++.+|.++++++|+++|++.|
T Consensus 445 -------~~-~~~~~----~~~~~~~s~i~~~~vs~~~~~~~~ 475 (483)
T PRK09442 445 -------KI-FGFHP----IVPSLLLSLLAFLIGNLFGTSAIQ 475 (483)
T ss_pred -------cc-cccch----HHHHHHHHHHHHHHHHhccCCCCh
Confidence 00 11233 345778888899999999887654
No 6
>PRK09395 actP acetate permease; Provisional
Probab=100.00 E-value=4.8e-59 Score=536.55 Aligned_cols=484 Identities=17% Similarity=0.219 Sum_probs=367.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHhcCCCCChHHHHHHHHHHHHhHHHHHHHHHHHHHhCChHH
Q 004956 40 QGVGYSVILGFGAFFAVFTSFLVWLEKRYVGSRHTSEWFNTAGRNVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGP 119 (722)
Q Consensus 40 ~~~gy~vvi~~~~yfal~~~~~~~~~~r~~~~~~ssedF~~AgRsv~~~l~a~si~at~~sa~t~lg~~g~ay~~Gi~~~ 119 (722)
+..+|..++.+.+|+.++..++.|.. ||+||.|||++|||++|+|+.+++++||++|+.+++|.+|.+|++|+++
T Consensus 30 ~~~~~~~~~i~~~y~~~~l~iG~~~~----r~~~s~~df~~agr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~- 104 (551)
T PRK09395 30 QPTNWQAIIMFLIFVVFTLGITYWAA----KRTRSASDFYTAGGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDG- 104 (551)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHhh----cccCCHHHHhhcCCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHH-
Confidence 44577777778899988887776643 3578899999999999999999999999999999999999999999987
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHhhcCCCCCHHHHHHHhhCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChh
Q 004956 120 FWYASGATIQVLL-FGVMAIEIKRKASHAHTVCEIVKARWGT-AAHLVFLAFCFLTNIIVTAMLLLGGSAVVNALTGVNI 197 (722)
Q Consensus 120 ~w~~~G~~l~ill-~~~la~~lr~~~~~~~Ti~E~l~~Ryg~-~~~~v~~~~~li~~i~~~a~ql~g~a~vl~~l~Gi~~ 197 (722)
.|+..+..++.++ ..++++|+|| .+.+|+||++++|||+ +.|.+.++..++..++|++.|+.+.+.+++.++|+|+
T Consensus 105 ~~~~~~~~~g~~~~~~~~~~~~r~--~g~~T~~d~l~~Rygs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~gi~~ 182 (551)
T PRK09395 105 LIYSIGFLVGWPIILFLIAERLRN--LGKYTFADVASYRLKQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFGLNY 182 (551)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh--CCCccHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 6888888777665 3456888876 5889999999999995 4799999999999999999999999999999999999
Q ss_pred HHHHHHHhHhhhHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC-ChHHHHHHHHHhhhhcccCCCCCCCC
Q 004956 198 YAASFLIPLGVIVYTLAGGLKATFLASYIHSVIVHVVLVIFVYLVYTASSELG-SPSVMYNRLVEVASKSRICQEPVSHA 276 (722)
Q Consensus 198 ~~~~il~~~iv~iYT~~GGlrav~~TD~iQ~vi~li~~li~~~~v~~~~~~~G-G~~~l~~~L~~~~~~~~~~~~~~~~~ 276 (722)
+.++++.++++++||..||+|++.|||.+|+++|+++.+++.+.++. +.| |++++++.+.+.+++..
T Consensus 183 ~~~ili~~~i~~iYt~~GGm~av~~TD~iQ~iim~~g~ii~~~~~~~---~~ggg~~~~~~~~~~~~~~~~--------- 250 (551)
T PRK09395 183 HVAVVLVGVLMMVYVLFGGMLATTWVQIIKAVLLLSGATFMAFMVMK---HVGFSFENLFSEAVAVHPKGL--------- 250 (551)
T ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCHHHHHHHHHhhCcccc---------
Confidence 99999999999999999999999999999999999998888776542 345 79999888765443210
Q ss_pred CCCCCCCCCCCCCcchhhhcchhhHHHHHHHHHhhcccccCcceehhheeeCC-hhhhHHHHHHHHHHHHHHHHHHHHHH
Q 004956 277 GQSCGPVNGNYKGSFLTILSSGGLVFGIINIVGNFGTVFVDNGYWVSAIAARP-SSTHKGYLLGGLVWFAVPFSLATSLG 355 (722)
Q Consensus 277 ~~~~~P~~~~~~gs~~t~~s~~glifg~~~il~~fg~~~~dq~~~QR~~aAk~-~~a~k~~~l~~~l~~~ip~~~~~~iG 355 (722)
....| ++...+..+ .+.+++... ++. ..+||++||++++|| +++||+..+++...... ......+|
T Consensus 251 -~~~~~--~~~~~~~~~-----~~~~~~~~~---~g~-~~~p~~~qR~~aaks~k~ar~~~~~~~~~~~~~-~~~~~~iG 317 (551)
T PRK09395 251 -AIMGP--GGLVKDPIS-----ALSLGLALM---FGT-AGLPHILMRFFTVSDAKEARKSVFYATGFIGYF-YILTFIIG 317 (551)
T ss_pred -cccCC--CccccchHH-----HHHHHHHHH---HHh-hcccHHHHhhhccCChHHHHHhHHHHHHHHHHH-HHHHHHHH
Confidence 00011 111011111 112222222 233 257899999999998 56788888776443322 23445689
Q ss_pred HHHHHhcCC---CCccc----cCCCCchHHHHHHhhhhHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhcCC-C
Q 004956 356 LGALALDLP---LTETE----ASHGLVPPATAIALMGKGGSILLLTMLFMAVTSAGSSELIAVSSLCTYDIYRTYINP-D 427 (722)
Q Consensus 356 l~a~al~~~---l~~~~----~~~~~v~p~~~~~llp~~l~gl~l~~i~aA~~ST~ss~l~a~Ssi~t~DIy~~~i~p-~ 427 (722)
+.++.+.+. ..+.+ .+++.+.+.+...+.|+++.+++.+++++|.|||.||.+++.|+++++|+|++++|| +
T Consensus 318 ~~a~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~glv~A~~lAA~mST~ss~lla~st~~~~Diy~~~~~~~~ 397 (551)
T PRK09395 318 FGAIVLVGTNPEFKDAAGALIGGNNMAAVHLANAVGGNLFLGFISAVAFATILAVVAGLTLAGASAVSHDLYANVIKKGK 397 (551)
T ss_pred HHHHHHhccCccccccccccCCCcccHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 998887532 21111 123556677777778889999999999999999999999999999999999999876 6
Q ss_pred CCcchhhHhhhHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHhhhHHHhhhhhccCCCchhhHHHHHHHHHHHHHH
Q 004956 428 ASGEKILKVSRAVILGFGCFMGFLAVILNKAGVSLGWMYLAMGVLIGSAVLPIAFMLLWRKANAIGAIAGTITGCLLGII 507 (722)
Q Consensus 428 as~k~ll~vsRi~vvv~~i~~~~~a~~~~~~~i~l~~l~~~~g~~~~~~~~plllgl~Wkr~n~~gAi~g~i~G~~~~i~ 507 (722)
++||+.++++|+.++++++++..+++...+.++ ..++...++...++.+||+++|+||||.|++|+++|+++|+++.+.
T Consensus 398 ~s~~~~l~v~Ri~~v~igi~a~~~a~~~~~~~i-~~~~~~~~~~~~~~~~p~lllglfwkr~~~~gA~ag~i~G~~~~l~ 476 (551)
T PRK09395 398 ATERDELRVSKITTLVLGVVAIILGILFEKQNI-AFMVGLAFAIAASANFPVLLLSMYWKGLTTRGAVIGGWLGLISAVV 476 (551)
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHccCCCcH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHH
Confidence 899999999999999999999999975443333 4445555666667788889999999999999999999999987665
Q ss_pred HHHHhhhhcccccccCCCCCCchhhHHHHHHHHhHhHhhhheecccCCCCC
Q 004956 508 TWLSVTAIEYGRINLDTTGRNAPMLAGNLVSILTGGAVHAVCSLLWPQNYD 558 (722)
Q Consensus 508 ~w~~~~~~~~G~i~~~~~~~~~~~l~g~~vsl~~s~i~~vivSlltp~~~d 558 (722)
...............+ ....++....++++.+++++++++|++|+++.|
T Consensus 477 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~vs~~v~~ivS~~t~~~~~ 525 (551)
T PRK09395 477 LMILSPTVWVDILGHE--KAIFPYEYPALFSMPLAFVGIWFFSITDNSARA 525 (551)
T ss_pred HHHHcchhhhhccccc--cccCCccccHHHHHHHHHHHhheeeecCCCcch
Confidence 4332111000000000 001112234456888889999999999876544
No 7
>PRK12488 acetate permease; Provisional
Probab=100.00 E-value=1.2e-58 Score=532.24 Aligned_cols=482 Identities=18% Similarity=0.198 Sum_probs=367.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHhcCCCCChHHHHHHHHHHHHhHHHHHHHHHHHHHhCChHH
Q 004956 40 QGVGYSVILGFGAFFAVFTSFLVWLEKRYVGSRHTSEWFNTAGRNVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGP 119 (722)
Q Consensus 40 ~~~gy~vvi~~~~yfal~~~~~~~~~~r~~~~~~ssedF~~AgRsv~~~l~a~si~at~~sa~t~lg~~g~ay~~Gi~~~ 119 (722)
+..||.+++.+.+|+++++.++.|.. ||+||.|||++|||++|+|+.++++.++++|+.+++|.+|.+|++|+++
T Consensus 28 ~~~~~~~i~i~~~y~~~~l~ig~~~~----r~~~s~~df~laGR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~~- 102 (549)
T PRK12488 28 QPLNWTAIGMFMVFVLFTLGITRWAA----RRTRSASDFYTAGGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYDG- 102 (549)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhee----eccCChHHHeeeCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhH-
Confidence 34578777778888888777776643 3578899999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHhhcCCCCCHHHHHHHhhCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChh
Q 004956 120 FWYASGATIQVLLF-GVMAIEIKRKASHAHTVCEIVKARWGT-AAHLVFLAFCFLTNIIVTAMLLLGGSAVVNALTGVNI 197 (722)
Q Consensus 120 ~w~~~G~~l~ill~-~~la~~lr~~~~~~~Ti~E~l~~Ryg~-~~~~v~~~~~li~~i~~~a~ql~g~a~vl~~l~Gi~~ 197 (722)
+||..|..++.++. .++++|+|| .+.+|+||++++|||+ +.|.+.+++.++..++|++.|+.+.+.+++.++|+|+
T Consensus 103 ~~~~~g~~~g~~~~~~~~a~~lr~--~g~~T~~d~l~~Rf~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~gi~~ 180 (549)
T PRK12488 103 LLYALGVLAGWPIILFLIAERLRN--LGKYTFADVVSYRLAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFGISY 180 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--CCCcchHHHHHHHcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 78988887777664 467888886 5789999999999995 5899999999999999999999999999999999999
Q ss_pred HHHHHHHhHhhhHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC-ChHHHHHHHHHhhhhcccCCCCCCCC
Q 004956 198 YAASFLIPLGVIVYTLAGGLKATFLASYIHSVIVHVVLVIFVYLVYTASSELG-SPSVMYNRLVEVASKSRICQEPVSHA 276 (722)
Q Consensus 198 ~~~~il~~~iv~iYT~~GGlrav~~TD~iQ~vi~li~~li~~~~v~~~~~~~G-G~~~l~~~L~~~~~~~~~~~~~~~~~ 276 (722)
+.++++..+++++||++|||||+.|||.+|+++|+++.+++.+.++ .+.| |++++++.+.+.++.. +
T Consensus 181 ~~~iii~~~i~~~Yt~~GGm~av~~td~iQ~~im~~~~i~~~~~~l---~~~g~g~~~~~~~~~~~~~~~--------~- 248 (549)
T PRK12488 181 LYAVVIVGALMVLYVTFGGMLATTWVQIIKAVLLLSGTSFMAFMVL---KHFGFSTEAMFASAVAVHAKG--------Q- 248 (549)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCCCHHHHHHHHHhccccc--------h-
Confidence 9999999999999999999999999999999999999888766654 3456 7888887664432110 0
Q ss_pred CCCCCCCCCCCCCcchhhhcchhhHHHHHHHHHhhcccccCcceehhheeeCC-hhhhHHHHHHHHHHHHHHHHHHHHHH
Q 004956 277 GQSCGPVNGNYKGSFLTILSSGGLVFGIINIVGNFGTVFVDNGYWVSAIAARP-SSTHKGYLLGGLVWFAVPFSLATSLG 355 (722)
Q Consensus 277 ~~~~~P~~~~~~gs~~t~~s~~glifg~~~il~~fg~~~~dq~~~QR~~aAk~-~~a~k~~~l~~~l~~~ip~~~~~~iG 355 (722)
....|. +...+..+.++ ..++ . .+|. ..+||++||++++|| +++||+..++..+...+. .....+|
T Consensus 249 -~~~~p~--~~~~~~~~~~~---~~l~--~---~lg~-~~~p~~~qR~~aaks~k~ar~s~~~~~~~~~~~~-~~~~~~G 315 (549)
T PRK12488 249 -AILAPG--GLLSNPIDAIS---LGLG--M---MFGT-AGLPHILMRFFTVSDAREARKSVLYATGFIGYFY-LLIIVVG 315 (549)
T ss_pred -hhcCCc--ccccCHHHHHH---HHHH--H---HHHh-ccCcHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 000221 11111111111 1111 1 2333 257899999999999 568899888765433333 3345689
Q ss_pred HHHHHhcCCCCc-----cc--cCCCCchHHHHHHhhhhHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhcCC-C
Q 004956 356 LGALALDLPLTE-----TE--ASHGLVPPATAIALMGKGGSILLLTMLFMAVTSAGSSELIAVSSLCTYDIYRTYINP-D 427 (722)
Q Consensus 356 l~a~al~~~l~~-----~~--~~~~~v~p~~~~~llp~~l~gl~l~~i~aA~~ST~ss~l~a~Ssi~t~DIy~~~i~p-~ 427 (722)
+++++++++... ++ .++|.+.|.+...++|.++.|++.+++++|.|||.|+.+++.|+.+++|+|++++|| +
T Consensus 316 ~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~GlvaA~~~AA~mST~ss~lls~st~is~Diy~~~~~~~~ 395 (549)
T PRK12488 316 FGAIVMVGTEPSYRDAGGKIIGGGNMVAVHLAQAVGGNLFLGFISAVAFATILAVVAGLALSGASAVSHDLYACVIRKGQ 395 (549)
T ss_pred HHHHHHhccCchhcccccccCCCcchhHHHhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 999988743111 11 135778888888899999999999999999999999999999999999999998865 7
Q ss_pred CCcchhhHhhhHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHhhhHHHhhhhhccCCCchhhHHHHHHHHHHHHHH
Q 004956 428 ASGEKILKVSRAVILGFGCFMGFLAVILNKAGVSLGWMYLAMGVLIGSAVLPIAFMLLWRKANAIGAIAGTITGCLLGII 507 (722)
Q Consensus 428 as~k~ll~vsRi~vvv~~i~~~~~a~~~~~~~i~l~~l~~~~g~~~~~~~~plllgl~Wkr~n~~gAi~g~i~G~~~~i~ 507 (722)
++|||.++++|+.++++++++..+++..+..++ ..+.....+...++.+||+++++||||.|++|+++|+++|+++++.
T Consensus 396 ~s~~~~l~v~Ri~~vvvgv~a~~~a~~~~~~~i-~~l~~~~~~~~a~~~~p~lllgl~wkr~t~~ga~ag~i~G~~~~~~ 474 (549)
T PRK12488 396 ASEAQEMRVSKIATLGIGLLAVVLGLMFESQNI-AFLSGLVLAIAASVNFPVLFLSMFWKGLTTRGAVAGSYAGLVSAVV 474 (549)
T ss_pred CChHHhhHHHHHHHHHHHHHHHHHHHccCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999975443333 3334444566667788889999999999999999999999986654
Q ss_pred HHHHhhhhcccccccCCCCCCchhhHHHHHHHHhHhHhhhheecccCCC
Q 004956 508 TWLSVTAIEYGRINLDTTGRNAPMLAGNLVSILTGGAVHAVCSLLWPQN 556 (722)
Q Consensus 508 ~w~~~~~~~~G~i~~~~~~~~~~~l~g~~vsl~~s~i~~vivSlltp~~ 556 (722)
...............+ ....+.....++++.+|+++++++|+++|++
T Consensus 475 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~v~~vvS~~t~~~ 521 (549)
T PRK12488 475 LVVLGPAVWVNVLHNA--TALFPYSNPALFSMSLAFLSAWVFSVTDRSE 521 (549)
T ss_pred HHHhcchhhhhccccc--cccCCCcccHHHHHHHHHHHHheeeeCCCCC
Confidence 3221110000000000 0011122234568888899999999998764
No 8
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=100.00 E-value=5.5e-58 Score=519.66 Aligned_cols=461 Identities=21% Similarity=0.280 Sum_probs=351.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHhcCCCCChHHHHHHHHHHHHhHHHHHHHHHHHHHhCChHHHHHH-HH
Q 004956 47 ILGFGAFFAVFTSFLVWLEKRYVGSRHTSEWFNTAGRNVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGPFWYA-SG 125 (722)
Q Consensus 47 vi~~~~yfal~~~~~~~~~~r~~~~~~ssedF~~AgRsv~~~l~a~si~at~~sa~t~lg~~g~ay~~Gi~~~~w~~-~G 125 (722)
++.+++|+.+++.++.|..||.++.+++.|||++|||++|+++++.+++|||+|+++++|.++.+|++|+++ .+.. .+
T Consensus 4 ~~~~~~y~~~~~~ig~~~~r~~~~~~~~~~dy~~agr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~-~~~~~~~ 82 (471)
T TIGR02119 4 VIPLIIYLVTVFLIAIYASKRVQSTDSFLNEYFLGGRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGW-VLLAMIQ 82 (471)
T ss_pred HHHHHHHHHHHHHHHHHHheeccCCCCCccceeEeCCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHH-HHHHHHH
Confidence 344488999888877776554222223467999999999999999999999999999999999999999874 2222 22
Q ss_pred HHHHHHHHHHHHHHHHh--hcCCCCCHHHHHHHhhCchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHH
Q 004956 126 ATIQVLLFGVMAIEIKR--KASHAHTVCEIVKARWGTAA-HLVFLAFCFLTNIIVTAMLLLGGSAVVNALTGVNIYAASF 202 (722)
Q Consensus 126 ~~l~ill~~~la~~lr~--~~~~~~Ti~E~l~~Ryg~~~-~~v~~~~~li~~i~~~a~ql~g~a~vl~~l~Gi~~~~~~i 202 (722)
...+.+...++++++++ |+.+.+|++|++++|||++. |.+..+..++..+.+.+.|+++++.+++.++|+|++.+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~T~~e~l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~gi~~~~~ii 162 (471)
T TIGR02119 83 VPTGYFVLGVLGKKFAIISRKYNAITINDVLKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTGLSYLTALF 162 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 22333333455666533 34799999999999999775 6677777777888899999999999999999999999999
Q ss_pred HHhHhhhHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCChHHHHHHHHHhhhhcccCCCCCCCCCCCCCC
Q 004956 203 LIPLGVIVYTLAGGLKATFLASYIHSVIVHVVLVIFVYLVYTASSELGSPSVMYNRLVEVASKSRICQEPVSHAGQSCGP 282 (722)
Q Consensus 203 l~~~iv~iYT~~GGlrav~~TD~iQ~vi~li~~li~~~~v~~~~~~~GG~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~P 282 (722)
+.++++++||..||+|++++||.+|+++++++.+++...+. .+.||+++..+.+++.+++.. +|
T Consensus 163 i~~~iv~iYt~~GG~~av~~td~iQ~~v~~~~~~~~~~~~l---~~~gG~~~~~~~l~~~~~~~~-------------~~ 226 (471)
T TIGR02119 163 IFSSSVLIYTTFGGFRAVALTDAIQGIVMFTGTTILLIAVI---KAGGGVEKIMEKLKDIDPNLI-------------TP 226 (471)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCHHHHHHHHHhcCcccc-------------CC
Confidence 99999999999999999999999999999998888776554 457899999988876544321 22
Q ss_pred CCCCCCCcchhhhcchhhHHHHHHHHHhhcccccCcceehhheeeCC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004956 283 VNGNYKGSFLTILSSGGLVFGIINIVGNFGTVFVDNGYWVSAIAARP-SSTHKGYLLGGLVWFAVPFSLATSLGLGALAL 361 (722)
Q Consensus 283 ~~~~~~gs~~t~~s~~glifg~~~il~~fg~~~~dq~~~QR~~aAk~-~~a~k~~~l~~~l~~~ip~~~~~~iGl~a~al 361 (722)
...+ ++.+. +. -..+.+ ...++.. ..||.+||++++|| ++++|+.++++++...+.+. ...+|+.++++
T Consensus 227 ~~~~---~~~~~-~~-~~~~~~---~~~~g~~-~~p~~~~R~~aak~~~~a~~~~~~~~~~~~~~~~~-~~~~G~~a~~~ 296 (471)
T TIGR02119 227 FGGD---GGLTK-PF-VASFWI---LVGIGVI-GLPQTAVRCMSYKDSKAMHRAMIIGTIVVGIIMLG-MHLAGVLGRAV 296 (471)
T ss_pred CCCC---cchhh-hH-HHHHHH---HHHHHHh-CchHHHHHHHhcCCHHHHhhhHhHHHHHHHHHHHH-HHHHHHhhhhh
Confidence 2111 11110 00 001111 1123332 46789999999998 56899999988776555443 34589888888
Q ss_pred cCCCCccccCCCCchHHHHHHhhhhHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhcCCCCCcchhhHhhhHHH
Q 004956 362 DLPLTETEASHGLVPPATAIALMGKGGSILLLTMLFMAVTSAGSSELIAVSSLCTYDIYRTYINPDASGEKILKVSRAVI 441 (722)
Q Consensus 362 ~~~l~~~~~~~~~v~p~~~~~llp~~l~gl~l~~i~aA~~ST~ss~l~a~Ssi~t~DIy~~~i~p~as~k~ll~vsRi~v 441 (722)
.|++ .++|+++|+++.+.+||++.+++++++++|.|||+||.+++.|+++++|+||+++||+++|||.+|++|+.+
T Consensus 297 ~p~~----~~~d~~~p~~~~~~lp~~~~gl~~a~llaA~mST~~s~l~~~ss~~~~Diy~~~~~~~~~~~~~~~~~r~~~ 372 (471)
T TIGR02119 297 IPDL----TVPDKVIPLLAIKVLPPILAGIFLAAPMAAIMSTVNSLLLQSSSTIIKDLYLNYIPKEAKESKIKKISMCIT 372 (471)
T ss_pred ccCC----CCccchHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Confidence 7654 257899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccccHHHHH-HHHHHHHHhhhHHHhhhhhccCCCchhhHHHHHHHHHHHHHHHHHHhhhhccccc
Q 004956 442 LGFGCFMGFLAVILNKAGVSLGWM-YLAMGVLIGSAVLPIAFMLLWRKANAIGAIAGTITGCLLGIITWLSVTAIEYGRI 520 (722)
Q Consensus 442 vv~~i~~~~~a~~~~~~~i~l~~l-~~~~g~~~~~~~~plllgl~Wkr~n~~gAi~g~i~G~~~~i~~w~~~~~~~~G~i 520 (722)
+++++++..++.. ..+. +.++ ...++...+++++|+++|+||||.|++|+++|+++|+++.+ .|.... ..
T Consensus 373 ~~~g~~~~~~a~~--~~~~-~~~~~~~~~~~~~~~~~~plllgl~w~r~t~~ga~~~~i~G~~~~~-~~~~~~----~~- 443 (471)
T TIGR02119 373 LIIGLLVIIAAIK--PPDL-IIWLNLFAFGGLEAAFIWPIVLGLYWKRANATGALASMIVGVGSYI-TLESFK----PK- 443 (471)
T ss_pred HHHHHHHHHHHhC--CchH-HHHHHHHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHH-HHHHHc----cc-
Confidence 9999998888863 3333 2222 23345556778899999999999999999999999996543 332211 10
Q ss_pred ccCCCCCCchhhHHHHHHHHhHhHhhhheecccCC
Q 004956 521 NLDTTGRNAPMLAGNLVSILTGGAVHAVCSLLWPQ 555 (722)
Q Consensus 521 ~~~~~~~~~~~l~g~~vsl~~s~i~~vivSlltp~ 555 (722)
. .+.++ .++++.+|.++++++|+++++
T Consensus 444 ---~-~~~~~----~~~g~~~~~~~~~~~s~~~~~ 470 (471)
T TIGR02119 444 ---I-FGLHN----IVPSLVFALIAFIIGSLFGKK 470 (471)
T ss_pred ---c-cccch----HHHHHHHHHHHHHHhhccCCC
Confidence 0 11233 345778888899999999665
No 9
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=100.00 E-value=7.1e-58 Score=518.94 Aligned_cols=473 Identities=25% Similarity=0.314 Sum_probs=376.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHhcCCCCChHHHHHHHHHHHHhHHHHHHHHHHHHHhCChHHHHHHHHH
Q 004956 47 ILGFGAFFAVFTSFLVWLEKRYVGSRHTSEWFNTAGRNVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGPFWYASGA 126 (722)
Q Consensus 47 vi~~~~yfal~~~~~~~~~~r~~~~~~ssedF~~AgRsv~~~l~a~si~at~~sa~t~lg~~g~ay~~Gi~~~~w~~~G~ 126 (722)
.+.+.+|++.+..++.+.. ||++|.|||++|||++|+++.++|..++|+|++|++|.+|.+|.+|+.+ +|...+.
T Consensus 6 ~ii~~iyli~~~~ig~~a~----~~~~~~~dy~~~gR~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~-~~~~~~~ 80 (493)
T COG0591 6 LIIFLIYLILMLLIGLYAY----RKTKSLEDYFLGGRSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSG-LWIAIGL 80 (493)
T ss_pred HHHHHHHHHHHHHHHHHHh----cccCchHHHhccCCcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHH-HHHHHHH
Confidence 3445777777666555533 3566999999999999999999999999999999999999999999998 6888876
Q ss_pred HHHHH-HHHHHHHHHHh--hcCCCCCHHHHHHHhhC-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHH
Q 004956 127 TIQVL-LFGVMAIEIKR--KASHAHTVCEIVKARWG-TAAHLVFLAFCFLTNIIVTAMLLLGGSAVVNALTGVNIYAASF 202 (722)
Q Consensus 127 ~l~il-l~~~la~~lr~--~~~~~~Ti~E~l~~Ryg-~~~~~v~~~~~li~~i~~~a~ql~g~a~vl~~l~Gi~~~~~~i 202 (722)
.++.. .+.++++|+|| |++|.+|+||++++||| +..|.+.+++.++.+++|+++|+++++.+++..+|+|+..+++
T Consensus 81 ~~~~~~~~~~~~~rl~~~~~~~~~~T~~d~l~~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~gi~~~~~~~ 160 (493)
T COG0591 81 LIGAFLLWLLFAPRLRRLAKARGATTIPDFLEARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFGISYVTGIL 160 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCccHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHH
Confidence 44444 46788888887 56899999999999999 6779999999999999999999999999999999999999999
Q ss_pred HHhHhhhHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCChHHHHHHHHHhhhhcccCCCCCCCCCCCCCC
Q 004956 203 LIPLGVIVYTLAGGLKATFLASYIHSVIVHVVLVIFVYLVYTASSELGSPSVMYNRLVEVASKSRICQEPVSHAGQSCGP 282 (722)
Q Consensus 203 l~~~iv~iYT~~GGlrav~~TD~iQ~vi~li~~li~~~~v~~~~~~~GG~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~P 282 (722)
+.++++++||.+||+|++.|||.+|+++|++++..+.+.++. ..||.++..+.+.+..+... .+|
T Consensus 161 ~~~~~v~~Yt~~gG~~av~~Td~iqg~im~i~~~~~~i~~~~---~~~g~~~~~~~~~~~~~~~~------------~~~ 225 (493)
T COG0591 161 IGALIVALYTFLGGLRAVVWTDFIQGLIMLIALIVIPILVLI---LFGGFGELFAVLASLAPLFL------------THP 225 (493)
T ss_pred HHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHh---hcccHHHHHHHHHhcccccc------------cCc
Confidence 999999999999999999999999999999999999988764 36899988887766544310 134
Q ss_pred CCCCCCCcchhhhcchhhHHHHHHHHHhhcccccCcceehhheeeCCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004956 283 VNGNYKGSFLTILSSGGLVFGIINIVGNFGTVFVDNGYWVSAIAARPS-STHKGYLLGGLVWFAVPFSLATSLGLGALAL 361 (722)
Q Consensus 283 ~~~~~~gs~~t~~s~~glifg~~~il~~fg~~~~dq~~~QR~~aAk~~-~a~k~~~l~~~l~~~ip~~~~~~iGl~a~al 361 (722)
.+++....+.+... .....+++.+ ..||.+||.++.|+. +.+|....++.+|..+.+..+..+|+...+.
T Consensus 226 ~~~~~~~~~~~~~~-----~~~~~~l~~~----~~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~ 296 (493)
T COG0591 226 FDGALSPIYIISLI-----AWGTLFLGYF----GQPHILPRFMAAKSIKSLPKSARLAGILWPLYCLLGAFLLGLLGIAY 296 (493)
T ss_pred ccccchHHHHHHHH-----HHHHHHhhhh----cCchhhhhhhhhccHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333222322211 1111223333 678999999998764 4566777777777666555556678877777
Q ss_pred cCCCC---ccccCCCCchHHHHHHhhhhHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhcCCCCCcchhhHhhh
Q 004956 362 DLPLT---ETEASHGLVPPATAIALMGKGGSILLLTMLFMAVTSAGSSELIAVSSLCTYDIYRTYINPDASGEKILKVSR 438 (722)
Q Consensus 362 ~~~l~---~~~~~~~~v~p~~~~~llp~~l~gl~l~~i~aA~~ST~ss~l~a~Ssi~t~DIy~~~i~p~as~k~ll~vsR 438 (722)
.++.+ ..+.|+|+++|+++.+.+|||..|+++++++||+|||+|+++++.|+.+++|+||++.|||++||++++++|
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~g~~~~ailaAvmSt~ss~ll~~ss~~t~Diyk~~~~~~a~~k~l~~i~r 376 (493)
T COG0591 297 FPLLPDLSVPLLNPELVFPYLILALFPPWIAGLLLAAILAAVMSTASSQLLVASSAITRDIYKRFLRKNASEKELVRIGR 376 (493)
T ss_pred hcccccccccCCCHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCChhHhhHHHH
Confidence 64432 244689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHhhhHHHhhhhhccCCCchhhHHHHHHHHHHHHHHHHHHhhhhccc
Q 004956 439 AVILGFGCFMGFLAVILNKAGVSLGWMYLAMGVLIGSAVLPIAFMLLWRKANAIGAIAGTITGCLLGIITWLSVTAIEYG 518 (722)
Q Consensus 439 i~vvv~~i~~~~~a~~~~~~~i~l~~l~~~~g~~~~~~~~plllgl~Wkr~n~~gAi~g~i~G~~~~i~~w~~~~~~~~G 518 (722)
+.++++++++..++.. ..+...+.....+..+.++++|++++++||||+|++|+++|+++|.++.+..|....+...
T Consensus 377 ~~v~vi~~~a~~~a~~--~~~~i~~l~~~~~~g~~a~~~p~~~~~L~wkr~t~~ga~agmi~G~i~~~~~~~~~~~~~~- 453 (493)
T COG0591 377 VVVLVIALLALLLALL--PPSSILGLVSLALAGFGAQFLPALLLGLFWKRATKRGAIAGMIAGLIVVLLTWLLFLKSFP- 453 (493)
T ss_pred HHHHHHHHHHHHHHHc--CchhHHHHHHHHHHHHHHHHHHHHhheeeeccchHhHHHHHHHHHHHHHHHHHHhhcCccc-
Confidence 9999999999998864 3333233344444555558999999999999999999999999999887776764432110
Q ss_pred ccccCCCCCCchhhHHHHHHHHhHhHhhhheecccCCC
Q 004956 519 RINLDTTGRNAPMLAGNLVSILTGGAVHAVCSLLWPQN 556 (722)
Q Consensus 519 ~i~~~~~~~~~~~l~g~~vsl~~s~i~~vivSlltp~~ 556 (722)
.. .. ....++..+.++.++.++.+++|+++++.
T Consensus 454 ---~~-~~-~~~~~~~~v~~fiv~~~~~~~~sl~~~~~ 486 (493)
T COG0591 454 ---YG-AF-ALGGLYEVVPGFIVNLLVTVVVSLLTKAE 486 (493)
T ss_pred ---cc-hh-cchhHHHHHHHHHHHHHHHHhhcccCCCC
Confidence 00 00 23345566678888888999999998773
No 10
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=100.00 E-value=2.3e-56 Score=513.49 Aligned_cols=479 Identities=17% Similarity=0.201 Sum_probs=362.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHhcCCCCChHHHHHHHHHHHHhHHHHHHHHHHHHHhCChHHHHHH
Q 004956 44 YSVILGFGAFFAVFTSFLVWLEKRYVGSRHTSEWFNTAGRNVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGPFWYA 123 (722)
Q Consensus 44 y~vvi~~~~yfal~~~~~~~~~~r~~~~~~ssedF~~AgRsv~~~l~a~si~at~~sa~t~lg~~g~ay~~Gi~~~~w~~ 123 (722)
+..++.+.+|+++++.++.|.. ||+++.|||++|||++++++.+.++.++++|+++++|.+|.+|++|+++ +||.
T Consensus 32 ~~~~~~~~~y~~~~l~ig~~~~----r~~~~~~dy~laGr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~~-~~~~ 106 (549)
T TIGR02711 32 IQAIIMFLLFVGFTLYITYWAS----KKTRSRSDYYTAGGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYDG-LIYS 106 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh----cccCCchhheeeCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH-HHHH
Confidence 4444557888888887776643 3567899999999999999999999999999999999999999999998 6888
Q ss_pred HHHHHHHHH-HHHHHHHHHhhcCCCCCHHHHHHHhhCch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHH
Q 004956 124 SGATIQVLL-FGVMAIEIKRKASHAHTVCEIVKARWGTA-AHLVFLAFCFLTNIIVTAMLLLGGSAVVNALTGVNIYAAS 201 (722)
Q Consensus 124 ~G~~l~ill-~~~la~~lr~~~~~~~Ti~E~l~~Ryg~~-~~~v~~~~~li~~i~~~a~ql~g~a~vl~~l~Gi~~~~~~ 201 (722)
.|..++.++ ..++++|+|| .+.+|+||++++|||++ .|.+.++..++..++|++.|+++++.+++.++|+|++.++
T Consensus 107 ~g~~~~~~i~~~~~a~~lrr--~g~~T~~d~l~~Rf~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~gi~~~~~i 184 (549)
T TIGR02711 107 LGFLVGWPIILFLIAERLRN--LGRYTFADVASYRLKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFGLNYHVAV 184 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHH--cCCccHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 887777654 4567899887 57899999999999854 7999999999999999999999999999999999999999
Q ss_pred HHHhHhhhHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC-ChHHHHHHHHHhhhhcccCCCCCCCCCCCC
Q 004956 202 FLIPLGVIVYTLAGGLKATFLASYIHSVIVHVVLVIFVYLVYTASSELG-SPSVMYNRLVEVASKSRICQEPVSHAGQSC 280 (722)
Q Consensus 202 il~~~iv~iYT~~GGlrav~~TD~iQ~vi~li~~li~~~~v~~~~~~~G-G~~~l~~~L~~~~~~~~~~~~~~~~~~~~~ 280 (722)
++..+++++||++||+||+.|||.+|+++|+++.+++.+.+. .+.| |++++++.+.+..++.. ...
T Consensus 185 ii~~~i~~~Yt~~GGm~av~~td~iQ~~im~~g~i~~~~~~~---~~~ggg~~~~~~~~~~~~~~~~----------~~~ 251 (549)
T TIGR02711 185 VLVGILMVMYVLFGGMLATTWVQIIKAVLLLFGATFMAFMVM---KSVGFSFNTLFKEAMAVHPKGV----------AIM 251 (549)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCCCHHHHHHHHHhhCcccc----------ccc
Confidence 999999999999999999999999999999998888776544 3345 78888776654433210 000
Q ss_pred CCCCCCCCCcchhhhcchhhHHHHHHHHHhhcccccCcceehhheeeCC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004956 281 GPVNGNYKGSFLTILSSGGLVFGIINIVGNFGTVFVDNGYWVSAIAARP-SSTHKGYLLGGLVWFAVPFSLATSLGLGAL 359 (722)
Q Consensus 281 ~P~~~~~~gs~~t~~s~~glifg~~~il~~fg~~~~dq~~~QR~~aAk~-~~a~k~~~l~~~l~~~ip~~~~~~iGl~a~ 359 (722)
.| +....+.++. +..++...+ |. ...||++||++++|| +++||+..++..+.. +.+.....+|+.++
T Consensus 252 ~~--~~~~~~~~~~-----~~~~~~~~l---g~-~g~P~~~~R~~taks~k~ar~s~~~~~~~~~-~~~~~~~~~G~~a~ 319 (549)
T TIGR02711 252 SP--GGLVSDPISA-----LSLGLGLMF---GT-AGLPHILMRFFTVSDAKEARKSVFYATGFMG-YFYILTFIIGFGAI 319 (549)
T ss_pred CC--CccccchHHH-----HHHHHHHHH---Hh-cCCchhheeeeecCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 12 1110111111 111222222 33 357899999999998 567888888764432 22334456898888
Q ss_pred HhcC-CC--Ccc----ccCCCCchHHHHHHhhhhHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhcCC-CCCcc
Q 004956 360 ALDL-PL--TET----EASHGLVPPATAIALMGKGGSILLLTMLFMAVTSAGSSELIAVSSLCTYDIYRTYINP-DASGE 431 (722)
Q Consensus 360 al~~-~l--~~~----~~~~~~v~p~~~~~llp~~l~gl~l~~i~aA~~ST~ss~l~a~Ssi~t~DIy~~~i~p-~as~k 431 (722)
++.+ +. .+. ..++|.+.|.+...+.|+++.+++.+++++|.|||.||.+++.|+.+++|+|++++|| +++||
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~glv~A~~~AA~mST~~s~l~a~st~i~~Diy~~~~~~~~~s~~ 399 (549)
T TIGR02711 320 LLVSANPEFKDATGALIGGNNMAAVHLANAVGGNLFLGFISAVAFATILAVVAGLTLAGASAVSHDLYANVIKKGKATER 399 (549)
T ss_pred HHcCCcccccccccccCCCcchHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChh
Confidence 8763 21 111 0134778888888899999999999999999999999999999999999999999864 78999
Q ss_pred hhhHhhhHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHhhhHHHhhhhhccCCCchhhHHHHHHHHHHHHHHHHHH
Q 004956 432 KILKVSRAVILGFGCFMGFLAVILNKAGVSLGWMYLAMGVLIGSAVLPIAFMLLWRKANAIGAIAGTITGCLLGIITWLS 511 (722)
Q Consensus 432 ~ll~vsRi~vvv~~i~~~~~a~~~~~~~i~l~~l~~~~g~~~~~~~~plllgl~Wkr~n~~gAi~g~i~G~~~~i~~w~~ 511 (722)
|.++++|+.++++++++..+++...+.++ ...+...++...++.+|++++|+||||.|++||++|+++|+++++..-..
T Consensus 400 ~~~~v~Ri~~vv~g~ia~~~a~~~~~~~i-~~l~~~~~~~~a~~~~p~lllgl~Wkr~n~~GA~ag~i~G~~~~~~~~~~ 478 (549)
T TIGR02711 400 DELRVSKITVLILGVIAIGLGILFENQNI-AFMVGLAFSIAASCNFPIILLSMYWSKLTTRGAMIGGWLGLITAVVLMIL 478 (549)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999975444333 33344455566666777799999999999999999999999876543322
Q ss_pred hhhhcccccccCCCCCCchhhHHHHHHHHhHhHhhhheecccCCCC
Q 004956 512 VTAIEYGRINLDTTGRNAPMLAGNLVSILTGGAVHAVCSLLWPQNY 557 (722)
Q Consensus 512 ~~~~~~G~i~~~~~~~~~~~l~g~~vsl~~s~i~~vivSlltp~~~ 557 (722)
......+... +. .+.+|...+.++++.++++..+++|+.+|++.
T Consensus 479 ~p~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~vs~~~~~~~ 522 (549)
T TIGR02711 479 GPTIWVQILG-HE-KPIYPYEYPALFSMIVAFIGIWFFSITDNSET 522 (549)
T ss_pred Cchhhhhhcc-CC-ccccCCCCchhhhhHHHHHHHheeeecCCchh
Confidence 1110101000 00 11233344567799999999999998886533
No 11
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=100.00 E-value=3.6e-55 Score=453.96 Aligned_cols=456 Identities=21% Similarity=0.269 Sum_probs=369.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHhcCCCCChHHHHHHHHHHHHhHHHHHHHHHHHHHhCChHHHHHHHHH
Q 004956 47 ILGFGAFFAVFTSFLVWLEKRYVGSRHTSEWFNTAGRNVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGPFWYASGA 126 (722)
Q Consensus 47 vi~~~~yfal~~~~~~~~~~r~~~~~~ssedF~~AgRsv~~~l~a~si~at~~sa~t~lg~~g~ay~~Gi~~~~w~~~G~ 126 (722)
++-++.|.+.+..+..|..+| ++|.+-..||++||||++..+.++++.||+.|+++|+|.+|.+|++|+++. +-+
T Consensus 4 ~~pli~YL~~v~~i~iy~~~k-~~k~~fLneYylgnRsmgg~VlAmt~~aTYisaSSFigGpgaayk~Glgwv----lLa 78 (473)
T COG4145 4 ILPLIGYLVVVFGIAIYAYRK-RSKGSFLNEYYLGNRSMGGIVLAMTFTATYISASSFIGGPGAAYKYGLGWV----LLA 78 (473)
T ss_pred ehhHHHHHHHHHHHHHHHHhh-hccccchHHHHhccCcccceehhhHHHHHHHHHhhhcCCCcHHHHhchHHH----HHH
Confidence 344567777777766665444 346677899999999999999999999999999999999999999999852 223
Q ss_pred HHHHH----HHHHHHHHHHh--hcCCCCCHHHHHHHhhCchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHH
Q 004956 127 TIQVL----LFGVMAIEIKR--KASHAHTVCEIVKARWGTAA-HLVFLAFCFLTNIIVTAMLLLGGSAVVNALTGVNIYA 199 (722)
Q Consensus 127 ~l~il----l~~~la~~lr~--~~~~~~Ti~E~l~~Ryg~~~-~~v~~~~~li~~i~~~a~ql~g~a~vl~~l~Gi~~~~ 199 (722)
++|++ .+..+++|+++ |++|+.|++|++++||.++- .++.++..++....+...|+.|++..++...|+|+..
T Consensus 79 ~iqvp~~~l~lgvlgkk~~~~ar~~nAltI~D~l~~RY~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~~gidY~t 158 (473)
T COG4145 79 MIQVPTVWLALGVLGKKFAILAREYNALTINDLLFARYQSRFLVWLASLSLIFFFVGAMTVQFIGGARLLETALGIDYTT 158 (473)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhCCeeHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHCCCchh
Confidence 44543 25678888876 67999999999999998775 5666776777788889999999999999999999999
Q ss_pred HHHHHhHhhhHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCChHHHHHHHHHhhhhcccCCCCCCCCCCC
Q 004956 200 ASFLIPLGVIVYTLAGGLKATFLASYIHSVIVHVVLVIFVYLVYTASSELGSPSVMYNRLVEVASKSRICQEPVSHAGQS 279 (722)
Q Consensus 200 ~~il~~~iv~iYT~~GGlrav~~TD~iQ~vi~li~~li~~~~v~~~~~~~GG~~~l~~~L~~~~~~~~~~~~~~~~~~~~ 279 (722)
+..++++.+.+||.+||.|||++||.+|+++|+++..+....+. +..||.++..+++++.++++.
T Consensus 159 gL~ifa~~V~iYt~fGGFRAvvltD~IQG~vmligtv~Lf~~~i---~~~GG~~~av~tl~~iDp~lv------------ 223 (473)
T COG4145 159 GLLIFAVSVAIYTAFGGFRAVVLTDTIQGLVMLIGTVVLFVGVI---YAGGGLSNAVETLTTIDPGLV------------ 223 (473)
T ss_pred hHHHHHHHHHHHHhhcceeeeehHHHHHHHHHHHHHHHHHHHHH---HhccCHHHHHHHHHhCCcccc------------
Confidence 99999999999999999999999999999999999988887665 446999999999998777654
Q ss_pred CCCCCCCC--CCcchhhhcchhhHHHHHHHHHhhcccccCcceehhheeeCChhh-hHHHHHHHHHHHHHHHHHHHHHHH
Q 004956 280 CGPVNGNY--KGSFLTILSSGGLVFGIINIVGNFGTVFVDNGYWVSAIAARPSST-HKGYLLGGLVWFAVPFSLATSLGL 356 (722)
Q Consensus 280 ~~P~~~~~--~gs~~t~~s~~glifg~~~il~~fg~~~~dq~~~QR~~aAk~~~a-~k~~~l~~~l~~~ip~~~~~~iGl 356 (722)
.|...+. +..+ + .-| +++-++|.. ..||...|++|.||+++ .++.+++.+..- +-.+..-++|.
T Consensus 224 -~P~~~~~~l~~~F--m-----~Sf---wilv~~gvl-glP~t~vr~ia~kDskaih~gmiigt~vi~-il~~gmhl~G~ 290 (473)
T COG4145 224 -TPQGADDILDPPF--M-----ASF---WILVCFGVL-GLPHTAVRCIAFKDSKAIHRGMIIGTIVIA-ILMLGMHLAGA 290 (473)
T ss_pred -CCCCCcccccchH--H-----HHH---HHHHHHHHh-cCcHHHHHHHhccchhHHhcCcchHHHHHH-HHHHHHHHhhh
Confidence 4543332 1111 1 112 334455543 56889999999999765 678888776543 33345566899
Q ss_pred HHHHhcCCCCccccCCCCchHHHHHHhhhhHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhcCCCCCcchhhHh
Q 004956 357 GALALDLPLTETEASHGLVPPATAIALMGKGGSILLLTMLFMAVTSAGSSELIAVSSLCTYDIYRTYINPDASGEKILKV 436 (722)
Q Consensus 357 ~a~al~~~l~~~~~~~~~v~p~~~~~llp~~l~gl~l~~i~aA~~ST~ss~l~a~Ssi~t~DIy~~~i~p~as~k~ll~v 436 (722)
.+++..|+++ ++|++.|.++.+.+||..+++++++.+||+|||.||+++-.||.+.+|+|..+..++.+|++..+.
T Consensus 291 ~graViPdlt----~~D~Vip~lalkvlpp~~agifl~apmaAiMSTIds~L~~~sstliKdLy~~~~~~~~~E~ki~~i 366 (473)
T COG4145 291 LGRAVIPDLT----VVDLVIPTLALKVLPPFAAGIFLAAPMAAIMSTINSQLLQSSSTLIKDLYLNVRDKLKNERKIKRI 366 (473)
T ss_pred hhhhhcCCCC----ccchhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 9999988875 479999999999999999999999999999999999999999999999999986577789999999
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccHHHHHH-HHHHHHHhhhHHHhhhhhccCCCchhhHHHHHHHHHHHHHHHHHHhhhh
Q 004956 437 SRAVILGFGCFMGFLAVILNKAGVSLGWMY-LAMGVLIGSAVLPIAFMLLWRKANAIGAIAGTITGCLLGIITWLSVTAI 515 (722)
Q Consensus 437 sRi~vvv~~i~~~~~a~~~~~~~i~l~~l~-~~~g~~~~~~~~plllgl~Wkr~n~~gAi~g~i~G~~~~i~~w~~~~~~ 515 (722)
+|++++.++.+-..+++ ++++. +-|+. ..+|..-+.+++|+++|+||+|+|+.||.++|++|.+..+ .|......
T Consensus 367 s~~~t~i~~~l~~i~al--~Pp~~-iiwlnlfAfggle~~Fl~plvlgLYw~kaNa~ga~aSMi~g~~~y~-~l~~~~~k 442 (473)
T COG4145 367 SMIATLIFGALLLIAAL--NPPEM-IIWLNLFAFGGLEAVFLWPLVLGLYWEKANAAGALASMIVGLVLYV-LLAFLGIK 442 (473)
T ss_pred HHHHHHHHHHHHHHHhh--CCcce-eeeeehhhhcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH-HHHHHhhH
Confidence 99999999999888885 67776 44544 5667788899999999999999999999999999997543 44433221
Q ss_pred cccccccCCCCCCchhhHHHHHHHHhHhHhhhheecccCCC
Q 004956 516 EYGRINLDTTGRNAPMLAGNLVSILTGGAVHAVCSLLWPQN 556 (722)
Q Consensus 516 ~~G~i~~~~~~~~~~~l~g~~vsl~~s~i~~vivSlltp~~ 556 (722)
. ...+|..+ ++.++++++.+.++..|++
T Consensus 443 i---------~~fhpivP----~l~vsi~~Flv~n~fg~~~ 470 (473)
T COG4145 443 I---------LGFHPIVP----SLLVSIIAFLVGNLFGKSK 470 (473)
T ss_pred h---------heeccccH----HHHHHHHHHHHHHHhcccc
Confidence 1 12567777 6677777999999987654
No 12
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=100.00 E-value=4e-54 Score=496.07 Aligned_cols=472 Identities=19% Similarity=0.204 Sum_probs=337.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCChhhHHhcCCCCChHHHHHHHHHHHHhHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Q 004956 50 FGAFFAVFTSFLVWLEKRYVGSRHTSEWFNTAGRNVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGPFWYASGATIQ 129 (722)
Q Consensus 50 ~~~yfal~~~~~~~~~~r~~~~~~ssedF~~AgRsv~~~l~a~si~at~~sa~t~lg~~g~ay~~Gi~~~~w~~~G~~l~ 129 (722)
+++|+++++.++.|. |+|+.|||++|||++|+|+++.|++||++|+.+++|.+|.+|++|+++ .|+..|..++
T Consensus 5 ~~~y~~~~l~iG~~~------~~~s~~dy~laGr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~-~~~~~g~~~~ 77 (552)
T TIGR03648 5 VGATFALYIGIGIWS------RAGSTSEFYVAGRGVPPVANGMATAADWMSAASFISMAGLIAFLGYDG-LAYLMGWTGG 77 (552)
T ss_pred ehHHHHHHHHHHHhe------ecCchHHHeeeCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHH-HHHHHHHHHH
Confidence 368888887766662 246899999999999999999999999999999999999999999987 6888887777
Q ss_pred HHH-HHHHHHHHHhhcCCCCCHHHHHHHhhCch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHhHh
Q 004956 130 VLL-FGVMAIEIKRKASHAHTVCEIVKARWGTA-AHLVFLAFCFLTNIIVTAMLLLGGSAVVNALTGVNIYAASFLIPLG 207 (722)
Q Consensus 130 ill-~~~la~~lr~~~~~~~Ti~E~l~~Ryg~~-~~~v~~~~~li~~i~~~a~ql~g~a~vl~~l~Gi~~~~~~il~~~i 207 (722)
.++ ..++++++|| .+.+|++|++++|||++ .|.+.++..++..+++++.|+.+++.+++.++|+|++.++++..++
T Consensus 78 ~~~~~~~~~p~~rr--~~~~T~~e~l~~Rf~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~gi~~~~~iii~~~i 155 (552)
T TIGR03648 78 YVLLALLLAPYLRK--FGKYTVPDFIGDRYYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLEVDFETGVFIGMAI 155 (552)
T ss_pred HHHHHHHHHHHHHH--CCCccHHHHHHHHhCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 655 3466888876 58999999999999966 5888888888899999999999999999999999999999999999
Q ss_pred hhHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCh------HHHH------HHHHHhhhhcccCCCCCCC
Q 004956 208 VIVYTLAGGLKATFLASYIHSVIVHVVLVIFVYLVYTASSELGSP------SVMY------NRLVEVASKSRICQEPVSH 275 (722)
Q Consensus 208 v~iYT~~GGlrav~~TD~iQ~vi~li~~li~~~~v~~~~~~~GG~------~~l~------~~L~~~~~~~~~~~~~~~~ 275 (722)
+++||+.||+||++|||.+|+++|+++.+++...+.. +..|++ ++.. +++++.+++ ++.
T Consensus 156 ~~iYt~~GG~~aV~~TD~iQ~iim~ig~i~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 226 (552)
T TIGR03648 156 VFFYAVLGGMKGVTWTQVAQYIVLIVAYLVPAIFISL--KLTGNPVPQLGYGSALSGVYLLDKLDELEVD-------LGF 226 (552)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCCCchhhhhHHHHhhhhhhhhhhhcccc-------cch
Confidence 9999999999999999999999999987766544322 122332 2222 111111100 000
Q ss_pred CCCCCCCCCCCCCCcchhhhcchhhHHHHHHHHHhhcccccCcceehhheeeCC-hhhhHHHHHHHHHHHHHHHHHHHHH
Q 004956 276 AGQSCGPVNGNYKGSFLTILSSGGLVFGIINIVGNFGTVFVDNGYWVSAIAARP-SSTHKGYLLGGLVWFAVPFSLATSL 354 (722)
Q Consensus 276 ~~~~~~P~~~~~~gs~~t~~s~~glifg~~~il~~fg~~~~dq~~~QR~~aAk~-~~a~k~~~l~~~l~~~ip~~~~~~i 354 (722)
. ...+|..+ .+..++++ . .+ ...++. +.+||++||++++|| +++||+..++..... +.+.....+
T Consensus 227 ~-~~~~~~~~---~~~~~~~~---~--~~---~~~lg~-~~~p~~~qR~~aaks~~~a~~~~~~~~~~~~-~~~~~~~~i 292 (552)
T TIGR03648 227 A-EYTEPFGS---KSRINVFA---L--TL---ALMVGT-AGLPHVIVRFYTVPKVRDARWSAGWALFFIA-LLYTTAPAV 292 (552)
T ss_pred h-hhcccccc---CChHHHHH---H--HH---HHHHhc-ccchHHHHHHhcCCCHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 0 00012111 11122111 1 11 112333 257889999999998 567888777654221 111122234
Q ss_pred HHHHHHhcC-CC--------C-------------ccccCCCCchHH-------------------HHHHhhhhHHHHHHH
Q 004956 355 GLGALALDL-PL--------T-------------ETEASHGLVPPA-------------------TAIALMGKGGSILLL 393 (722)
Q Consensus 355 Gl~a~al~~-~l--------~-------------~~~~~~~~v~p~-------------------~~~~llp~~l~gl~l 393 (722)
|..++.... +. + ..+.++|.++|+ ...+.+|+++.++++
T Consensus 293 g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~lp~~l~gl~~ 372 (552)
T TIGR03648 293 AAFARYNLITTVNGTPYAELPGWVANWEKTGLLKFEDKNGDGILQYSGDAGNELTIDRDIIVLATPEIAGLPYWVIGLVA 372 (552)
T ss_pred HHHHHHHhhhcccccccccchhhhhhhhccccccccccCCCCcccccccccccccccccHHHhhHHHHcCChHHHHHHHH
Confidence 555444321 10 0 011234444433 234578999999999
Q ss_pred HHHHHHHHhHHhHHHHHHHHHHHHHHhhhhcCCCCCcchhhHhhhHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Q 004956 394 TMLFMAVTSAGSSELIAVSSLCTYDIYRTYINPDASGEKILKVSRAVILGFGCFMGFLAVILNKAGVSLGWMYLAMGVLI 473 (722)
Q Consensus 394 ~~i~aA~~ST~ss~l~a~Ssi~t~DIy~~~i~p~as~k~ll~vsRi~vvv~~i~~~~~a~~~~~~~i~l~~l~~~~g~~~ 473 (722)
+++++|+|||+||.+++.|+++++|+|++++||+++||+.++++|+.++++++++..++.. ..+....+.....+...
T Consensus 373 ag~~aA~mSt~~s~l~a~st~~~~Di~~~~~~~~~s~~~~l~~~R~~~v~~~~~~~~~a~~--~~~~i~~l~~~~~~~~~ 450 (552)
T TIGR03648 373 AGGLAAALSTAAGLLLVISSAISHDLYYRIINPNASEKQRLLVARIALVVAAVIAGYFGLN--PPGFIAQVVAFAFGLAA 450 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHHHHHHc--cccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999888863 23322555556666667
Q ss_pred hhhHHHhhhhhccCCCchhhHHHHHHHHHHHHHHHHHHhhhhcc--cc-----cccCCCCCCchhhHHHHHHHHhHhHhh
Q 004956 474 GSAVLPIAFMLLWRKANAIGAIAGTITGCLLGIITWLSVTAIEY--GR-----INLDTTGRNAPMLAGNLVSILTGGAVH 546 (722)
Q Consensus 474 ~~~~~plllgl~Wkr~n~~gAi~g~i~G~~~~i~~w~~~~~~~~--G~-----i~~~~~~~~~~~l~g~~vsl~~s~i~~ 546 (722)
+++++|+++++||||.|++|+++|+++|+++.+. +....+... +. ...+.+.+.++..+ .++++.+|.++.
T Consensus 451 ~~~~~~~llgl~w~r~~~~ga~~g~i~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~v~~~v~ 528 (552)
T TIGR03648 451 ASFFPALVLGIFWKRMNREGAIAGMLTGLGFTFS-YIVYFKPWGFIGTNPGANVPENWWFGISPEGI-GLIGMPVNFAVA 528 (552)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH-HHHhccccccccccccccCCccccccCCcccc-hHHHHHHHHHHh
Confidence 8889999999999999999999999999976543 222111100 00 00001111222222 357899999999
Q ss_pred hheecccCCCC
Q 004956 547 AVCSLLWPQNY 557 (722)
Q Consensus 547 vivSlltp~~~ 557 (722)
+++|+++|++.
T Consensus 529 ~~vS~~t~~~~ 539 (552)
T TIGR03648 529 IVVSLVTPPPP 539 (552)
T ss_pred eeeecCCCCCc
Confidence 99999987643
No 13
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=100.00 E-value=9.2e-54 Score=476.59 Aligned_cols=399 Identities=25% Similarity=0.348 Sum_probs=318.8
Q ss_pred cCCCCChHHHHHHHHHHHHhHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhhCc
Q 004956 81 AGRNVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGPFWYASGATIQVLLFGVMAIEIKRKASHAHTVCEIVKARWGT 160 (722)
Q Consensus 81 AgRsv~~~l~a~si~at~~sa~t~lg~~g~ay~~Gi~~~~w~~~G~~l~ill~~~la~~lr~~~~~~~Ti~E~l~~Ryg~ 160 (722)
|||++|+++.+.+++|||+|+++++|.++.+|++|+++ .|+..+..++.++...+..+.+|| .+.+|++|++++|||+
T Consensus 1 agr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~T~~e~l~~Ryg~ 78 (407)
T TIGR00813 1 AGRSLGGWVVAASLFASYISASQFLGLPGAIYAYGFAI-GFYELGALVLLIILGWLFVPIFIN-NGAYTMPEYLEKRFGK 78 (407)
T ss_pred CCCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-cCCCchhHHHHHHhCc
Confidence 79999999999999999999999999999999999987 688888777766655443333333 6899999999999998
Q ss_pred h-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHhHhhhHHhhccchHHHHHHHHHHHHHHHHHHHHHH
Q 004956 161 A-AHLVFLAFCFLTNIIVTAMLLLGGSAVVNALTGVNIYAASFLIPLGVIVYTLAGGLKATFLASYIHSVIVHVVLVIFV 239 (722)
Q Consensus 161 ~-~~~v~~~~~li~~i~~~a~ql~g~a~vl~~l~Gi~~~~~~il~~~iv~iYT~~GGlrav~~TD~iQ~vi~li~~li~~ 239 (722)
+ .|.+.++..++..+++++.|+++.+.+++.++|+|++.++++.++++++||..||+|++++||.+|+++|+++.+++.
T Consensus 79 ~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~gi~~~~~~ii~~~i~~~Yt~~GG~~av~~Td~iQ~~i~~~~~i~~~ 158 (407)
T TIGR00813 79 RILRGLSVLSLILYIFLYMSVDLFSGALLIELITGLDLYLSLLLLGAITILYTVFGGLKAVVWTDTIQAVIMILGTFILP 158 (407)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 788888888999999999999999999999999999999999999999999999999999999999999999888887
Q ss_pred HHHHhhcccCCChHHHHHHHHHhhhhcccCCCCCCCCCCCCCCCCCCCCCcchhhhcchhhHHHHHHHHHhhcccccCcc
Q 004956 240 YLVYTASSELGSPSVMYNRLVEVASKSRICQEPVSHAGQSCGPVNGNYKGSFLTILSSGGLVFGIINIVGNFGTVFVDNG 319 (722)
Q Consensus 240 ~~v~~~~~~~GG~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~P~~~~~~gs~~t~~s~~glifg~~~il~~fg~~~~dq~ 319 (722)
+.++ .+.||++++.+.+++..+......+. + ++. .++... ...+.-..++.+...+.. +.||+
T Consensus 159 ~~~~---~~~GG~~~~~~~l~~~~~~~~~~~~~-----~--~~~---~~~~~~-~~~~~~~~~~~p~~~~~~---~~~~~ 221 (407)
T TIGR00813 159 VFAF---SEVGGLGTFVEKASQAAPTNPSPDDL-----Y--DFF---RDPSTS-DLPWGAGVFGLPHVALWY---WTNQV 221 (407)
T ss_pred HHHH---HHcCCHHHHHHHHHhcCCCccchhhh-----c--cCC---CCCccc-CCChHHHHhChHHHHHHH---hcCHH
Confidence 7655 45799999999887754310000000 0 000 000100 011111122333332222 27999
Q ss_pred eehhheeeCC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc-----ccCCCCchHHHHHHhhhhHHHHHHH
Q 004956 320 YWVSAIAARP-SSTHKGYLLGGLVWFAVPFSLATSLGLGALALDLPLTET-----EASHGLVPPATAIALMGKGGSILLL 393 (722)
Q Consensus 320 ~~QR~~aAk~-~~a~k~~~l~~~l~~~ip~~~~~~iGl~a~al~~~l~~~-----~~~~~~v~p~~~~~llp~~l~gl~l 393 (722)
++||++++|| +++||+..++++.+..++ .+...+|+++++++++..++ +.++|+++|+++.+.+|+++.++++
T Consensus 222 ~~qR~~a~ks~~~~r~~~~~~~~~~~~~~-~~~~l~G~~a~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~lp~~l~gl~~ 300 (407)
T TIGR00813 222 IVQRCLAAKSAKHAKKGCLISGVLKLLPM-FGAVLPGLIARALYTDIDPALAGAVNQNSDQAYPLLVQELMPPGLAGLFL 300 (407)
T ss_pred HhhHHHhcCCHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHhcccChhhhcccCCChhhHHHHHHHHHcCcchHHHHH
Confidence 9999999998 567888888776654444 34556999999987542221 2478999999999999999999999
Q ss_pred HHHHHHHHhHHhHHHHHHHHHHHHHHhhhhcCCCCC-cchhhHhhhHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Q 004956 394 TMLFMAVTSAGSSELIAVSSLCTYDIYRTYINPDAS-GEKILKVSRAVILGFGCFMGFLAVILNKAGVSLGWMYLAMGVL 472 (722)
Q Consensus 394 ~~i~aA~~ST~ss~l~a~Ssi~t~DIy~~~i~p~as-~k~ll~vsRi~vvv~~i~~~~~a~~~~~~~i~l~~l~~~~g~~ 472 (722)
+++++|.|||+||.+++.|++++||+||+++||+.+ ||+.++.+|++++++++++.+++.. +.+...+++....+..
T Consensus 301 agilaA~mST~~s~l~a~ss~~~~Di~~~~~~~~~~~~~~~~~~~r~~~~~~~~i~~~~~~~--~~~~i~~~~~~~~~~~ 378 (407)
T TIGR00813 301 AAILAAVMSTLSSQLNSASTVFTMDLYKKIIRPNASGEKKIVMRGRIAVLVAAVIAGFVAAA--QGGQVLQYVQEAFGGL 378 (407)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHHHHHHHc--CCchHHHHHHHHHHHh
Confidence 999999999999999999999999999999999987 8999999999999999998886542 2332255566677777
Q ss_pred HhhhHHHhhhhhccCCCchhhHHHHHHHH
Q 004956 473 IGSAVLPIAFMLLWRKANAIGAIAGTITG 501 (722)
Q Consensus 473 ~~~~~~plllgl~Wkr~n~~gAi~g~i~G 501 (722)
.+++++|+++++||||.|++|+++|+++|
T Consensus 379 ~~~~~~pl~lgl~w~r~~~~ga~~~~i~G 407 (407)
T TIGR00813 379 GAPFLPVFLLGIFWKRMNAKGALAGMIAG 407 (407)
T ss_pred cchHHHHHHHHHhcCcCChHhHHHHhhcC
Confidence 88999999999999999999999999876
No 14
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=100.00 E-value=1.3e-54 Score=483.29 Aligned_cols=397 Identities=30% Similarity=0.456 Sum_probs=290.1
Q ss_pred HHhcCCCCChHHHHHHHHHHHHhHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH-HHHHHHHHhhcCCCCCHHHHHHH
Q 004956 78 FNTAGRNVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGPFWYASGATIQVLLF-GVMAIEIKRKASHAHTVCEIVKA 156 (722)
Q Consensus 78 F~~AgRsv~~~l~a~si~at~~sa~t~lg~~g~ay~~Gi~~~~w~~~G~~l~ill~-~~la~~lr~~~~~~~Ti~E~l~~ 156 (722)
|++|||++|+++++.+++|+|+|+++++|.++.+|++|+++ .|+.++..++.++. .++++|+|| .+.+|++|++++
T Consensus 1 f~~agr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~-~~~~~~~~~~~~~~~~~~~~~~r~--~~~~T~~e~~~~ 77 (406)
T PF00474_consen 1 FFVAGRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGISG-LWYAIGYAIGFLLFALFFAPRLRR--SGAVTIPEYLEK 77 (406)
T ss_dssp -----S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGG-GHHHHHHHHHHHHHHHHTHHHHHH--TT--SHHHHHHH
T ss_pred CeeCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcce-eeeccccchhHHHHHHHHHHhhcc--cchhhhhhhhhh
Confidence 78999999999999999999999999999999999999997 68888888776664 467888885 689999999999
Q ss_pred hhCchh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHhHhhhHHhhccchHHHHHHHHHHHHHHHHH
Q 004956 157 RWGTAA--HLVFLAFCFLTNIIVTAMLLLGGSAVVNALTGVNIYAASFLIPLGVIVYTLAGGLKATFLASYIHSVIVHVV 234 (722)
Q Consensus 157 Ryg~~~--~~v~~~~~li~~i~~~a~ql~g~a~vl~~l~Gi~~~~~~il~~~iv~iYT~~GGlrav~~TD~iQ~vi~li~ 234 (722)
|||++. |.+.++..++..+++.+.|+++.+.+++.++|+|+..++++..+++++||..||+|++++||.+|+++++++
T Consensus 78 Ryg~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~gi~~~~~~~i~~~i~~iYt~~GGl~av~~td~iQ~~i~~~~ 157 (406)
T PF00474_consen 78 RYGSKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFGIPYNTAILIVGVIVIIYTFFGGLRAVAWTDFIQGVIMIIG 157 (406)
T ss_dssp HT-HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHTTCTT------SHHHHHHHHHHHH
T ss_pred hcCCchhhhhhcccccchhhhhhhhccccccccchhhccchhhhHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHH
Confidence 999988 778788888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccCCChHHHHHHHHHhhhhcccCCCCCCCCCCCCCCCCCCCCCcchhhhcchhhHHHHHHHHHhhccc
Q 004956 235 LVIFVYLVYTASSELGSPSVMYNRLVEVASKSRICQEPVSHAGQSCGPVNGNYKGSFLTILSSGGLVFGIINIVGNFGTV 314 (722)
Q Consensus 235 ~li~~~~v~~~~~~~GG~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~P~~~~~~gs~~t~~s~~glifg~~~il~~fg~~ 314 (722)
.+++.+.++ +++||++++.+.+.+.+++..+ ..+|...+...+.....+ +.+. ..+|..
T Consensus 158 ~~~~~~~~~---~~~gg~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~-----~~~~---~~~g~~ 216 (406)
T PF00474_consen 158 AIVVLIFVL---SAVGGFGGLFQNLSAAHPNFLD----------LFNPGGFSMFSSPLFFLS-----FWIA---LMLGTF 216 (406)
T ss_dssp HHHHHHHHH---HHHHCHHHHHHHHHHH-GGGG-----------SS--SS-----SSGGGGS------TTH---HHHSTH
T ss_pred HHHhhhccc---hhcCCchhhHHHHhhcCccccc----------ccCCCCcccccchhhhHH-----HHHH---HHhhhc
Confidence 998888766 4579999999999887664210 012211110011111111 1111 123332
Q ss_pred ccCcceehhheeeCC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCC-CccccCCCCchHHHHHHhhhhHHH
Q 004956 315 FVDNGYWVSAIAARP-SSTHKGYLLGGLVWFAVPFSLATSLGLGALALD---LPL-TETEASHGLVPPATAIALMGKGGS 389 (722)
Q Consensus 315 ~~dq~~~QR~~aAk~-~~a~k~~~l~~~l~~~ip~~~~~~iGl~a~al~---~~l-~~~~~~~~~v~p~~~~~llp~~l~ 389 (722)
.+|+++||++++|| +++||+...+.+....+. .....+|+.+.++. ++. .+++.++|+++|+++.+++||++.
T Consensus 217 -~~p~~~qR~~aak~~~~ar~~~~~~~~~~~~~~-~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 294 (406)
T PF00474_consen 217 -GAPHFWQRFLAAKSPKTARKGMLIAIIFLIIFY-FLTIFIGLIAIALFGLYPDAAGPSLGDPDLAFPYLAAQYLPPGLA 294 (406)
T ss_dssp -HH-HHHHHHHSSSHHHHHHHHHHHHHGGGTTHH-HHHHHHHHHH-HHHHHH-TT--S-SSSGGGHHHHHHT-TS-TTHH
T ss_pred -cchHHHHHHHhcCCHHHHHHHHhHHhhhheeee-hHHhhhhhhhhcccccccccccccccCCcccchhhhhhhccchhH
Confidence 56999999999998 567888887765443222 22234676655443 222 234457899999999999999999
Q ss_pred HHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhcCCC-CCcchhhHhhhHHHHHHHHHHHHHHHHhcccccHHHHHHHH
Q 004956 390 ILLLTMLFMAVTSAGSSELIAVSSLCTYDIYRTYINPD-ASGEKILKVSRAVILGFGCFMGFLAVILNKAGVSLGWMYLA 468 (722)
Q Consensus 390 gl~l~~i~aA~~ST~ss~l~a~Ssi~t~DIy~~~i~p~-as~k~ll~vsRi~vvv~~i~~~~~a~~~~~~~i~l~~l~~~ 468 (722)
+++++++++|.|||+|+.+++.|++++||+|++++||+ ++|||.++++|+.++++++++.+++...++.++ .......
T Consensus 295 gl~~~~~~aA~~ST~~s~l~a~ss~~~~Di~~~~~~~~~~s~~~~~~~~ri~~~v~~~i~~~la~~~~~~~i-~~~~~~~ 373 (406)
T PF00474_consen 295 GLFLAGILAAIMSTADSLLLAISSIFSRDIYKPFIKPNSASEKQLLRVSRIAIVVIGIIAILLALFFPDSGI-IDLILFA 373 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-SS-S-SSHHHHHHHHHHHHHHHHHHHHGGGGGGSSH-HHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhhhhhhHHhhhccccccccchhhhhhccceeEEeeHHhHHHHHhccccchH-HHHHHHH
Confidence 99999999999999999999999999999999999888 899999999999999999999998875443333 5555556
Q ss_pred HHHHHhhhHHHhhhhhccCCCchhhHHHHHHHH
Q 004956 469 MGVLIGSAVLPIAFMLLWRKANAIGAIAGTITG 501 (722)
Q Consensus 469 ~g~~~~~~~~plllgl~Wkr~n~~gAi~g~i~G 501 (722)
.+...+++++|+++++||||.|++||++|+++|
T Consensus 374 ~~~~~~~~~~~~~~gl~wkr~t~~ga~~~~i~G 406 (406)
T PF00474_consen 374 FGILAAPFFPPLLLGLYWKRATKRGAIAGMIVG 406 (406)
T ss_dssp HTTTHHHHHHHHHHHHH-TT--HHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHhhccCCCCHHHHhhheeeC
Confidence 666678889999999999999999999999987
No 15
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=100.00 E-value=4.2e-50 Score=429.92 Aligned_cols=462 Identities=19% Similarity=0.210 Sum_probs=355.0
Q ss_pred cCCCCChhhHHhcCCCCChHHHHHHHHHHHHhHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH-HHHHHHHhhcCCC
Q 004956 69 VGSRHTSEWFNTAGRNVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGPFWYASGATIQVLLFG-VMAIEIKRKASHA 147 (722)
Q Consensus 69 ~~~~~ssedF~~AgRsv~~~l~a~si~at~~sa~t~lg~~g~ay~~Gi~~~~w~~~G~~l~ill~~-~la~~lr~~~~~~ 147 (722)
.+|.+++.||++|||+++....++++.+.|+|+++|+|.++..+-.|+.+ +||.+|++.+.++.. ++++++|+ .+-
T Consensus 27 ~~R~~s~tdyYvAG~~i~~fqNGlAiagdyMSaASflGiag~I~~~GYdG-~~Y~iG~~~Gy~i~~fL~A~~LRk--~Gk 103 (529)
T COG4147 27 SKRTRSATDYYVAGGRITGFQNGLAIAGDYMSAASFLGIAGLIFISGYDG-LIYSIGWTGGYPILLFLIAEYLRK--LGK 103 (529)
T ss_pred ecccccccceeecCCcccccccceehhccccchHhhhchhHhhhhcccch-HHHHHHHHHHHHHHHHHHHHHHHh--cCC
Confidence 34689999999999999999999999999999999999999999999999 799999999988754 56888887 688
Q ss_pred CCHHHHHHHhhCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHhHhhhHHhhccchHHHHHHHHH
Q 004956 148 HTVCEIVKARWGT-AAHLVFLAFCFLTNIIVTAMLLLGGSAVVNALTGVNIYAASFLIPLGVIVYTLAGGLKATFLASYI 226 (722)
Q Consensus 148 ~Ti~E~l~~Ryg~-~~~~v~~~~~li~~i~~~a~ql~g~a~vl~~l~Gi~~~~~~il~~~iv~iYT~~GGlrav~~TD~i 226 (722)
+|+||++.+||++ +.|.+..+..++....|+..|+.|.+.+++.++|+|++.++++..+++.+|+++|||||+.||..+
T Consensus 104 yT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~gv~~~vgv~ig~ilm~~Yvv~GGM~atTW~Qi~ 183 (529)
T COG4147 104 YTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLGVPYHVGVVIGGILMMVYVVLGGMKATTWVQII 183 (529)
T ss_pred cchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCceeehhhHhHHHHHHHHhcchhhhhHHHHH
Confidence 9999999999995 579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCChHHHHHHHHHhhhhcccCCCCCCCCCCCCCCCCCCCCCcchhhhcchhhHHHHHH
Q 004956 227 HSVIVHVVLVIFVYLVYTASSELGSPSVMYNRLVEVASKSRICQEPVSHAGQSCGPVNGNYKGSFLTILSSGGLVFGIIN 306 (722)
Q Consensus 227 Q~vi~li~~li~~~~v~~~~~~~GG~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~P~~~~~~gs~~t~~s~~glifg~~~ 306 (722)
|.++++.+.++....+.. +.-|++..........++.. .+.....| |.. +-++.+..++.| .+
T Consensus 184 qavlLi~a~~i~ai~i~~--~~~g~~~~~~~~~~~~~~~~--------~~~~~~~p--Gl~---~~~~i~~isl~~--aL 246 (529)
T COG4147 184 QAVLLIVAALIMAIMIMW--KLGGNPNPLFAEAVTVHPKD--------DGSDIMEP--GLL---YKDPIDFISLGF--AL 246 (529)
T ss_pred HHHHHHHHHHHHHHHHHH--HHcCCcchHHHHHhhcCccc--------CcccccCC--CCc---ccCHHHHHHHHH--HH
Confidence 999999999888876543 22345655555443332210 00000012 222 223332212222 22
Q ss_pred HHHhhcccccCcceehhheeeCC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCcc-----------cc---
Q 004956 307 IVGNFGTVFVDNGYWVSAIAARP-SSTHKGYLLGGLVWFAVPFSLATSLGLGALALDL-PLTET-----------EA--- 370 (722)
Q Consensus 307 il~~fg~~~~dq~~~QR~~aAk~-~~a~k~~~l~~~l~~~ip~~~~~~iGl~a~al~~-~l~~~-----------~~--- 370 (722)
.+|+. .-||...|+++-+| +++||+..|+.. +..+.......+|..++.+.. +.... |.
T Consensus 247 ---m~GTA-gLPHil~RFfTvp~~k~AR~Sv~wA~~-fIg~fYi~~~~ig~~A~~~v~t~~~~~p~w~~~w~~~~D~~~~ 321 (529)
T COG4147 247 ---MVGTA-GLPHILMRFFTVPDAKEARKSVFWATG-FIGIFYILTPIIGAGARLLVGTNPVGKPAWAAKWIKTGDANGD 321 (529)
T ss_pred ---HHccC-CCCeEEEEEEecCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhccCCCCCcchhhccccccccccc
Confidence 34553 56899999999998 678988777543 223333444457877777642 11110 11
Q ss_pred ----CCCCchHHHHHHhh-hhHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhcCCCCCcchhhHhhhHHHHHHH
Q 004956 371 ----SHGLVPPATAIALM-GKGGSILLLTMLFMAVTSAGSSELIAVSSLCTYDIYRTYINPDASGEKILKVSRAVILGFG 445 (722)
Q Consensus 371 ----~~~~v~p~~~~~ll-p~~l~gl~l~~i~aA~~ST~ss~l~a~Ssi~t~DIy~~~i~p~as~k~ll~vsRi~vvv~~ 445 (722)
..++..+....++- |+++.+++.++.||+++||++..+++.||.+++|+|.+.+||+++||+.++++|+.+++++
T Consensus 322 gi~~~~n~a~vlaa~~i~~g~~v~g~vsAga~AtaLstaaGL~l~iasavsHDiY~~vik~~ase~~~v~vaRi~~v~~~ 401 (529)
T COG4147 322 GIGGWTNMAAVLAAPAIGGGPWVLGFVSAGAFATALSTAAGLLLVIASAVSHDLYAMVIKKGATEKKEVRVARIAVVILG 401 (529)
T ss_pred ccccccchHHHhhhHHhcCCceehhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhCCCCCccceehhHHHHHHHHH
Confidence 22667788888887 7999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHhhhHHHhhhhhccCCCchhhHHHHHHHHHHHHHHHHHHhhhhccccccc---
Q 004956 446 CFMGFLAVILNKAGVSLGWMYLAMGVLIGSAVLPIAFMLLWRKANAIGAIAGTITGCLLGIITWLSVTAIEYGRINL--- 522 (722)
Q Consensus 446 i~~~~~a~~~~~~~i~l~~l~~~~g~~~~~~~~plllgl~Wkr~n~~gAi~g~i~G~~~~i~~w~~~~~~~~G~i~~--- 522 (722)
+++..+++. +++.........+++..++.+|.+++++||||.|++||++|++.|++.++..|... +...+...-
T Consensus 402 vva~~lgi~--~~gnVaflVa~AF~lAaSa~fPvivlglfWKr~n~~GAi~G~~~GL~~tlv~i~l~-~~i~~~~~~~~~ 478 (529)
T COG4147 402 VVAILLGIL--PPGNVAFLVALAFALAASANFPVIVLGLFWKRLNTAGAIAGMLLGLIVTLVLIILS-PTIWVVILGHPG 478 (529)
T ss_pred HHHHHheec--CCccHHHHHHHHHHHHHHcccchhhHHHHHhhccHHhHHHHHHHHHHHHHHHHHhC-ccccccccCccc
Confidence 999999974 44431333445667777777888999999999999999999999999888776543 321111110
Q ss_pred CCCCCCchhhHHHHHHHHhHhHhhhheecccCCCCCh
Q 004956 523 DTTGRNAPMLAGNLVSILTGGAVHAVCSLLWPQNYDW 559 (722)
Q Consensus 523 ~~~~~~~~~l~g~~vsl~~s~i~~vivSlltp~~~d~ 559 (722)
.......+ -...++++.++++...++|++||++++.
T Consensus 479 ~~~~~~~~-~~~g~~sipv~F~~~~ivSllt~~~~~~ 514 (529)
T COG4147 479 FGWAGFPY-EGPGLFSIPVGFLGAWIVSLLTKPPEED 514 (529)
T ss_pred cccccCCC-CCcchhhhhHHHHHhHheeccCCCCchH
Confidence 01111111 1223458889999999999999886653
No 16
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4e-50 Score=448.09 Aligned_cols=437 Identities=19% Similarity=0.248 Sum_probs=361.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHhcCCCCChHHHHHHHHHHHHhHHHHHHHHHHHHHhCChHH
Q 004956 40 QGVGYSVILGFGAFFAVFTSFLVWLEKRYVGSRHTSEWFNTAGRNVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGP 119 (722)
Q Consensus 40 ~~~gy~vvi~~~~yfal~~~~~~~~~~r~~~~~~ssedF~~AgRsv~~~l~a~si~at~~sa~t~lg~~g~ay~~Gi~~~ 119 (722)
+..||.++ .+||.+.+.++.|...| ++.++.|||++|||++.++-+|.|++||+.|+.+++|.++.+|++|+..
T Consensus 7 ~~~d~~v~---~l~~~~~~~ig~~~~~~--~~~~t~~~y~l~gr~m~~~Pv~~SL~aS~~s~~~~~gl~~e~~~~G~~~- 80 (585)
T KOG2349|consen 7 DAADYSVF---VLYFLLVMAIGLWFGFR--TKRGTVEEYFLGGRSMVWLPVAASLFASNISSVHFLGLPGEGYAYGIQY- 80 (585)
T ss_pred cccchhHH---HHHHHHhhhheeeEEEE--cCCccHhhhhhcCCcceEEEeehhhhhhhhcceeeecCchHHHHHHHHH-
Confidence 37899888 68999999999998754 3334999999999999999999999999999999999999999999996
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHH
Q 004956 120 FWYASGATIQVLLFGVMAIEIKRKASHAHTVCEIVKARWGTAAHLVFLAFCFLTNIIVTAMLLLGGSAVVNALTGVNIYA 199 (722)
Q Consensus 120 ~w~~~G~~l~ill~~~la~~lr~~~~~~~Ti~E~l~~Ryg~~~~~v~~~~~li~~i~~~a~ql~g~a~vl~~l~Gi~~~~ 199 (722)
.++.....+..++..++..|+..| .+..|.+|++++||+++.|.+.++..++.++.++..-+++.+..++..+|++.+.
T Consensus 81 ~~~~~~~l~~~~~~~~~f~Pvf~~-~~v~~~~eYl~~Rf~~~~r~l~~l~f~l~~~~~l~v~~y~pal~~~qvtg~~~~l 159 (585)
T KOG2349|consen 81 WFFEWNALLSVLLLGWIFIPVFYR-LGVTTMYEYLEKRFGGRVRYLATLSFILMIFLYLPVDMYAPALAINQVTGINLYL 159 (585)
T ss_pred HHHHHHHHHHHHhhheEEEEEEEe-cCeeehhHHHHHHhcccchhhHHHHHHHHHHhheeeeEeehHHHHHHHhccCcee
Confidence 345555555555544444444333 6899999999999999999888888888999999999999999999999999999
Q ss_pred HHHHHhHhhhHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCChHHHHHHHHHhhhhcccCCCCCCCCCCC
Q 004956 200 ASFLIPLGVIVYTLAGGLKATFLASYIHSVIVHVVLVIFVYLVYTASSELGSPSVMYNRLVEVASKSRICQEPVSHAGQS 279 (722)
Q Consensus 200 ~~il~~~iv~iYT~~GGlrav~~TD~iQ~vi~li~~li~~~~v~~~~~~~GG~~~l~~~L~~~~~~~~~~~~~~~~~~~~ 279 (722)
..+++..++.+||..||+|||+|||.+|+++|+.+.+.+... +..+.||.+.+++.-.+..+... . + -+.
T Consensus 160 ~~~~~~~ic~~YT~~GGlkaVi~TDv~Q~~iml~~~~~v~i~---gt~~vGG~~~V~e~a~~~gr~~~---~---~-~~~ 229 (585)
T KOG2349|consen 160 IVVILGLICVFYTALGGLKAVIWTDVVQTVIMLGGVLAVMIK---GTMKVGGLGRVLEKAFDAGRVNF---V---A-EFL 229 (585)
T ss_pred ehHHHHHHHHHHHHhcCeeEEEEhhHHHHHHHHHHHHHHhhe---eehhcCcccceeeecccCCceee---c---c-ccc
Confidence 999999999999999999999999999999999999998885 44678999999987655543211 0 0 122
Q ss_pred CCCCCCCCCCcchhhhcchhhHHH-HHHHHHhhcccccCcceehhheeeCC-hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004956 280 CGPVNGNYKGSFLTILSSGGLVFG-IINIVGNFGTVFVDNGYWVSAIAARP-SSTHKGYLLGGLVWFAVPFSLATSLGLG 357 (722)
Q Consensus 280 ~~P~~~~~~gs~~t~~s~~glifg-~~~il~~fg~~~~dq~~~QR~~aAk~-~~a~k~~~l~~~l~~~ip~~~~~~iGl~ 357 (722)
.+|...+. .++ +++| .+..++.+ ++||...||.++.|+ ++++++.++.+...+.+.+ ....+|+.
T Consensus 230 ~dp~vr~t---~W~------~~~Gg~~~~l~~~---~vnQ~~VQR~lsl~slk~ak~~~~~~~~~~~l~~~-~~~~~G~i 296 (585)
T KOG2349|consen 230 RDPTVRHT---PWS------LLFGGTIMWLSYY---GVNQLIVQRYLSLPSLKHAKPSLLLFGYGVLLIMF-IMVFVGMI 296 (585)
T ss_pred CCCccccc---chh------HhcCCcHHHHHHH---hhhHHHHhHHhccccHHHhhhhhhhhhhHHHHHHH-hhccccee
Confidence 35544331 222 2222 22223333 589999999999999 6889999988887765544 44569999
Q ss_pred HHHhcCCCCc----cccCCCCchHHHHHHhhh--hHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhcCCCCCcc
Q 004956 358 ALALDLPLTE----TEASHGLVPPATAIALMG--KGGSILLLTMLFMAVTSAGSSELIAVSSLCTYDIYRTYINPDASGE 431 (722)
Q Consensus 358 a~al~~~l~~----~~~~~~~v~p~~~~~llp--~~l~gl~l~~i~aA~~ST~ss~l~a~Ssi~t~DIy~~~i~p~as~k 431 (722)
.++++.+-++ ....+|+.+|.++.+.+| ||+.|++++++++|.+||+||.+|++|+++++|++|++.| +.+||
T Consensus 297 ~~~~Y~~Cdpl~~g~v~~~D~~~P~fV~d~~~~~pGl~GLfia~vfsA~LSsLSS~~NS~s~v~~eD~ik~~~k-~~se~ 375 (585)
T KOG2349|consen 297 IYALYTDCDPLCGGLVGCPDQLLPLFVMDLMGHLPGLRGLFIAVVFSAALSSLSSIFNSLSTVFLEDYIKPLRK-PLSER 375 (585)
T ss_pred EeeecccCCcccccccCCccccccHHHHHhcCCCCCccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcC-CcChH
Confidence 9998854222 345789999999999999 9999999999999999999999999999999999999854 89999
Q ss_pred hhhHhhhHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHhhhHHHhhhhhccCCCchhhHHHHHHHHHHHHHH
Q 004956 432 KILKVSRAVILGFGCFMGFLAVILNKAGVSLGWMYLAMGVLIGSAVLPIAFMLLWRKANAIGAIAGTITGCLLGII 507 (722)
Q Consensus 432 ~ll~vsRi~vvv~~i~~~~~a~~~~~~~i~l~~l~~~~g~~~~~~~~plllgl~Wkr~n~~gAi~g~i~G~~~~i~ 507 (722)
+..+..|+.+++.+++++.++...+..+..+.......|...+|.+..+++|+||||.|.+||++|++.|++++.+
T Consensus 376 ~~~~~~r~~vvv~G~~si~~~fvv~~~~~vlq~~~si~g~~~gP~~gvF~Lgmf~pr~N~kgA~~Gli~~~~~~~w 451 (585)
T KOG2349|consen 376 ELNIAMRLFVVVLGLISIGLAFVVELLQQVLQYSQSIFGYLGGPLLGVFVLGMFVPRVNEKGALVGLIAGLLLMLW 451 (585)
T ss_pred HHhhhhheeeeeehhHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHhccccCCcchhHHHHHHHHHHHH
Confidence 9999999999999999999998776655447777788899999999999999999999999999999999976543
No 17
>COG4146 Predicted symporter [General function prediction only]
Probab=100.00 E-value=3.6e-43 Score=363.38 Aligned_cols=480 Identities=19% Similarity=0.236 Sum_probs=361.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHhcCCCCChHHHHHHHHHHHHhHHHHHHHHHHHHHhCChHHHHHH-
Q 004956 45 SVILGFGAFFAVFTSFLVWLEKRYVGSRHTSEWFNTAGRNVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGPFWYA- 123 (722)
Q Consensus 45 ~vvi~~~~yfal~~~~~~~~~~r~~~~~~ssedF~~AgRsv~~~l~a~si~at~~sa~t~lg~~g~ay~~Gi~~~~w~~- 123 (722)
..++.|..|-.+++ ++.|.-.| +..-+|++.||+|||+++..++++|++-|..|...++|..+.+|+.+++..-|-.
T Consensus 4 i~i~sFl~~t~~Va-~isW~Ktr-~~Dl~ss~GYFLaGR~Lsg~VI~~SlvLTnLSTEQlvGln~~ayk~~~svmaWeVt 81 (571)
T COG4146 4 ITILSFLGVTLLVA-IISWWKTR-GTDLSSSKGYFLAGRSLSGLVIACSLVLTNLSTEQLVGLNGQAYKGNMSVMAWEVT 81 (571)
T ss_pred HHHHHHHHHHHHHH-heeeeecc-CCccccccceEeccCcccchhheehhhhhcccHHHhccccceeccCCeEEEEEEec
Confidence 34445555444333 35553211 2246789999999999999999999999999999999999999999998533521
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhhCchhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhC------Ch
Q 004956 124 SGATIQVLLFGVMAIEIKRKASHAHTVCEIVKARWGTAAHLVFLAFCFLTN-IIVTAMLLLGGSAVVNALTG------VN 196 (722)
Q Consensus 124 ~G~~l~ill~~~la~~lr~~~~~~~Ti~E~l~~Ryg~~~~~v~~~~~li~~-i~~~a~ql~g~a~vl~~l~G------i~ 196 (722)
....++++.+.++++++|| +.+|+|||+|+||++++|.+.+++.++.. ...+-..++.++.+++.++. ++
T Consensus 82 s~i~L~flAl~~lprylK~---GitTIPdFlE~RfD~~TR~Iis~lFLi~y~~~flPtvLYsGAla~nsiF~l~~v~~IS 158 (571)
T COG4146 82 SVIPLIFLALYFLPRYLKR---GITTIPDFLEERFDKTTRMIISFLFLIAYGVCFLPTVLYSGALALNSIFHLGEVLQIS 158 (571)
T ss_pred chHHHHHHHHHHHHHHHhc---CCccchHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHhhhhchHhhhCcC
Confidence 2223344446678888886 89999999999999999998888777665 34466778899999988753 44
Q ss_pred ----hHHHHHHHhHhhhHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCChHHHHHHHHHhhhhcccCCCC
Q 004956 197 ----IYAASFLIPLGVIVYTLAGGLKATFLASYIHSVIVHVVLVIFVYLVYTASSELGSPSVMYNRLVEVASKSRICQEP 272 (722)
Q Consensus 197 ----~~~~~il~~~iv~iYT~~GGlrav~~TD~iQ~vi~li~~li~~~~v~~~~~~~GG~~~l~~~L~~~~~~~~~~~~~ 272 (722)
.+...+.++++-++|.++||+||+..+|.+.++-++++.+.+.++......+ |+..+=.+.+...+++..
T Consensus 159 ~g~~i~~~viaiG~~g~~Yai~GGLkA~AvsDtiNgigLviGgLlvPifaLi~lG~-Gsfa~G~~~itt~h~eKl----- 232 (571)
T COG4146 159 HGAAIWLLVIAIGLAGILYAIIGGLKAMAVSDTINGIGLVIGGLLVPIFALIALGK-GSFAQGIEQITTVHAEKL----- 232 (571)
T ss_pred cchHHHHHHHHHHHHHHHHHHHcchhheeeccccchhhHhhhhHHHHHHHHHhhcC-ccHhhchhhhhccCHHHh-----
Confidence 3445566778888999999999999999999999999998888776654322 444444444444433311
Q ss_pred CCCCCCCCCCCCCCCCCcchhhhcchhhHHHHHHHHHhhcccccCcceehhheeeCC-hhhhHHHHHHHHHHHHHHHHHH
Q 004956 273 VSHAGQSCGPVNGNYKGSFLTILSSGGLVFGIINIVGNFGTVFVDNGYWVSAIAARP-SSTHKGYLLGGLVWFAVPFSLA 351 (722)
Q Consensus 273 ~~~~~~~~~P~~~~~~gs~~t~~s~~glifg~~~il~~fg~~~~dq~~~QR~~aAk~-~~a~k~~~l~~~l~~~ip~~~~ 351 (722)
+...++++ ..+|..+..|+. +...| .+|+||++.||.++||| ++.+||.++++.+++.-|..+.
T Consensus 233 --------NaIGg~~d-----~vPw~a~fTGll-~vN~F-YWcTNQ~IvQRtLaak~LaeGQKG~Llaa~fk~~~pl~Lv 297 (571)
T COG4146 233 --------NAIGGPTD-----PVPWGAAFTGLL-LVNTF-YWCTNQGIVQRTLAAKSLAEGQKGALLAAVFKMLDPLVLV 297 (571)
T ss_pred --------cccCCCCC-----CCcHHHHHHhHh-hhhee-eeeccHHHHHHHHhhhhhhccccccHHHHHHHHhchHHhh
Confidence 22223322 134555555542 23344 45899999999999999 7889999999999988887665
Q ss_pred HHHHHHHHHhcCCCCccccCCCCchHHHHHHhhhhHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhcCCCCCcc
Q 004956 352 TSLGLGALALDLPLTETEASHGLVPPATAIALMGKGGSILLLTMLFMAVTSAGSSELIAVSSLCTYDIYRTYINPDASGE 431 (722)
Q Consensus 352 ~~iGl~a~al~~~l~~~~~~~~~v~p~~~~~llp~~l~gl~l~~i~aA~~ST~ss~l~a~Ssi~t~DIy~~~i~p~as~k 431 (722)
++|+.+.-++.++. +.|+.+|.++.+.+|..+.|.+.+.+|.|+.||.++.+|+.+++++.|+||+.+|||++|+
T Consensus 298 -LPGliafhlygdL~----~aDmaYP~LVn~VlPv~l~GFf~AvLFGAilStFN~fLNSa~Tlf~~diy~~I~k~na~e~ 372 (571)
T COG4146 298 -LPGLIAFHLYGDLP----KADMAYPTLVNNVLPVPLVGFFGAVLFGAILSTFNGFLNSASTLFSMDIYRRIIKQNAEEQ 372 (571)
T ss_pred -hhHHHHHHHhccCC----ccccccHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhHhhcCCCCcH
Confidence 59999999987753 5789999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHhhhHHHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHHhhhHHHhhhhhccCCCchhhHHHHHHHHHHHHHHHHH
Q 004956 432 KILKVSRAVILGFGCFMGFLAVILNK-AGVSLGWMYLAMGVLIGSAVLPIAFMLLWRKANAIGAIAGTITGCLLGIITWL 510 (722)
Q Consensus 432 ~ll~vsRi~vvv~~i~~~~~a~~~~~-~~i~l~~l~~~~g~~~~~~~~plllgl~Wkr~n~~gAi~g~i~G~~~~i~~w~ 510 (722)
+++.++|.....+++.+.+++..+.+ ++....|+-.+-|...-|++.-++.|+|.||....++-..+..+.+. +.
T Consensus 373 eLv~~grkf~a~~Ai~sv~iaP~i~~apqGly~~~k~~nGfynvPiva~~ivGfF~k~vpalAakva~~ihvil----Y~ 448 (571)
T COG4146 373 ELVTVGRKFGAFIAIVSVLIAPWIANAPQGLYSWMKQLNGFYNVPIVAIIIVGFFFKRVPALAAKVAMGIHVIL----YI 448 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHhcCcccchhHHHHHHHHHHhhcchhHHHHHHHhhhee----Ee
Confidence 99999999999999999999965433 33226667667777777888888999999999999999988877742 22
Q ss_pred HhhhhcccccccCCCCCCchhhHHHHHHHHhHhHhhhheecccCCCCChhhhhhhhhcc
Q 004956 511 SVTAIEYGRINLDTTGRNAPMLAGNLVSILTGGAVHAVCSLLWPQNYDWDTTKQITMVE 569 (722)
Q Consensus 511 ~~~~~~~G~i~~~~~~~~~~~l~g~~vsl~~s~i~~vivSlltp~~~d~~~~~~~~~~~ 569 (722)
...+...+ ..++++-.-.-+..+.++|.++-.++|+..++ ..++.+.+|
T Consensus 449 ~i~~vv~~---------~vnFlYVla~lF~inVvVMLviGflKpr~t~f-~~~~a~~VD 497 (571)
T COG4146 449 TINYVVKF---------DVNFLYVLACLFCINVVVMLVIGFLKPRATPF-TFKDAFAVD 497 (571)
T ss_pred eEEEEEEE---------EeeeehhHHHHHHHHhHHHHhhhcccCCCCcc-ccCcccccc
Confidence 11111111 12344444557888999999999999887653 333334444
No 18
>KOG3761 consensus Choline transporter [Lipid transport and metabolism]
Probab=99.97 E-value=8.5e-33 Score=282.49 Aligned_cols=421 Identities=18% Similarity=0.236 Sum_probs=309.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCC--------hhhHHhcCCCCChHHHHHHHHHHHHhHHHHHHHHHHHHHhCChHH
Q 004956 48 LGFGAFFAVFTSFLVWLEKRYVGSRHT--------SEWFNTAGRNVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGP 119 (722)
Q Consensus 48 i~~~~yfal~~~~~~~~~~r~~~~~~s--------sedF~~AgRsv~~~l~a~si~at~~sa~t~lg~~g~ay~~Gi~~~ 119 (722)
+.+++|+.++..++.|..||- |++++ +|+-.+|||++|..+-++++-+||.+++-+-|.++..|+-|+.-
T Consensus 8 iaii~fyllillvgiwa~~ks-kns~~~e~~agaate~iil~grdig~lvg~ftmtatwvgg~yingtaealy~~gygl- 85 (591)
T KOG3761|consen 8 IAIIFFYLLILLVGIWAARKS-KNSGEAEEEAGAATEAIILAGRDIGLLVGGFTMTATWVGGAYINGTAEALYNGGYGL- 85 (591)
T ss_pred HHHHHHHHHHHHHHHHHhhcc-cCccchhhhccccchhheeccccceeeeeeEEEEEEEecceeeccchhhhccCCccc-
Confidence 445666677777899988763 32222 36788999999999999999999999999999999999986653
Q ss_pred HH--HHHHHHHHHHHH-HHHHHHHHhhcCCCCCHHHHHHHhhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCh
Q 004956 120 FW--YASGATIQVLLF-GVMAIEIKRKASHAHTVCEIVKARWGTAAHLVFLAFCFLTNIIVTAMLLLGGSAVVNALTGVN 196 (722)
Q Consensus 120 ~w--~~~G~~l~ill~-~~la~~lr~~~~~~~Ti~E~l~~Ryg~~~~~v~~~~~li~~i~~~a~ql~g~a~vl~~l~Gi~ 196 (722)
.| -.+|..+.+++- .++++++|++ +..|+.|=+++.||++..-+.-+-.++.-.++.+..+-+.+..++.+.|++
T Consensus 86 ~~~qapigyaislilggl~fak~mr~e--gyitmldpfq~~ygkriggll~ipallge~fwaaai~salgatisvii~id 163 (591)
T KOG3761|consen 86 AGAQAPIGYAISLILGGLFFAKKMREE--GYITMLDPFQHIYGKRIGGLLFIPALLGEMFWAAAIFSALGATISVIIDID 163 (591)
T ss_pred ccccCcchhhHHHHhhhhhhcchhhhc--CcEEeechHHHHhhhhccceEeeHHHHhHHHHHHHHHHHhcCeEEEEEecc
Confidence 23 234555555553 3668888875 899999999999999988777778888999999999999999999999999
Q ss_pred hHHHHHHHhHhhhHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCChHHHHHHHHHhhhhcccCCCCCCCC
Q 004956 197 IYAASFLIPLGVIVYTLAGGLKATFLASYIHSVIVHVVLVIFVYLVYTASSELGSPSVMYNRLVEVASKSRICQEPVSHA 276 (722)
Q Consensus 197 ~~~~~il~~~iv~iYT~~GGlrav~~TD~iQ~vi~li~~li~~~~v~~~~~~~GG~~~l~~~L~~~~~~~~~~~~~~~~~ 276 (722)
..+++++.+.+..+||..||+.+|.+||++|-+.+++++.+....+.. + .+..++-.+... .+
T Consensus 164 m~~sv~isa~ia~~yt~~gg~yavaytdvvqlfcifvglwi~vp~al~---h-~~~~di~~~a~h--ak----------- 226 (591)
T KOG3761|consen 164 MHASVIISACIATFYTFTGGLYAVAYTDVVQLFCIFVGLWICVPAALS---H-DAAADIGFNAGH--AK----------- 226 (591)
T ss_pred ccHhHHHHHHHHHHHhhccceEEEeehhHHHHHHHHhhhheechhhhc---C-chhhhccccccc--cc-----------
Confidence 999999999999999999999999999999999999999988887542 1 111111100000 00
Q ss_pred CCCCCCCCCCCCCcchhhhcchhhHHHHHHHHHhhcccccCcceehhheeeCChh-hhHHHHHHH--HHHHHHHHHHHHH
Q 004956 277 GQSCGPVNGNYKGSFLTILSSGGLVFGIINIVGNFGTVFVDNGYWVSAIAARPSS-THKGYLLGG--LVWFAVPFSLATS 353 (722)
Q Consensus 277 ~~~~~P~~~~~~gs~~t~~s~~glifg~~~il~~fg~~~~dq~~~QR~~aAk~~~-a~k~~~l~~--~l~~~ip~~~~~~ 353 (722)
.+ .|.-|..+|.--+ .+|..- | + +..||-. -.|.|+||++++|+.+ ++.-..+++ ++.+.||-. +
T Consensus 227 -yq-k~wig~i~g~~e~-~~wid~-~-l---ll~~ggi-pwq~yfqrvlss~sa~~aq~lsfla~~gcilmaip~~---l 294 (591)
T KOG3761|consen 227 -YQ-KDWIGEIDGFKET-SLWIDC-F-L---LLMFGGI-PWQAYFQRVLSSKSAHGAQTLSFLAAFGCILMAIPAA---L 294 (591)
T ss_pred -cc-CCceeccCCchhh-HHHHHH-H-H---HHHhcCC-cHHHHHHHHHhccccchhHHHHHHHHhchHheeCCHH---H
Confidence 00 2222222221111 111110 1 1 1223321 4589999999999865 333333332 333445543 4
Q ss_pred HHHHHHHhcCCCCc-------------cccCCCCchHHHHHHhhhhHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHh
Q 004956 354 LGLGALALDLPLTE-------------TEASHGLVPPATAIALMGKGGSILLLTMLFMAVTSAGSSELIAVSSLCTYDIY 420 (722)
Q Consensus 354 iGl~a~al~~~l~~-------------~~~~~~~v~p~~~~~llp~~l~gl~l~~i~aA~~ST~ss~l~a~Ssi~t~DIy 420 (722)
+|-.++-..-+++. +....|+++|...+.+.|.|++-.-+-++-+|+||++||..++.+|++.++||
T Consensus 295 igai~~ntdw~~t~y~~~d~~tkvesip~d~~dmilpiv~qyl~p~~iaf~glgavsaavmssadssilsaasmfa~ni~ 374 (591)
T KOG3761|consen 295 IGAIAANTDWNMTAYGLPDNGTKVESIPPDEADMILPIVFQYLCPRWIAFFGLGAVSAAVMSSADSSILSAASMFAHNIW 374 (591)
T ss_pred HhhhhccCcccccccCCCCCCcccccCCccccceehhHHHHhhchHHHhhhcchHHHHHHHhccchHhhhHHHHHhhhhh
Confidence 67666544311110 11247899999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCcchhhHhhhHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHhhhHHHhhhhhccCCCchhhHHHHHHH
Q 004956 421 RTYINPDASGEKILKVSRAVILGFGCFMGFLAVILNKAGVSLGWMYLAMGVLIGSAVLPIAFMLLWRKANAIGAIAGTIT 500 (722)
Q Consensus 421 ~~~i~p~as~k~ll~vsRi~vvv~~i~~~~~a~~~~~~~i~l~~l~~~~g~~~~~~~~plllgl~Wkr~n~~gAi~g~i~ 500 (722)
|--+||+++||+.+++.|+.++.+|..+...++..... .+..++......-.++|-+++.+|-||.|..|+++|-..
T Consensus 375 kls~r~~asdkeii~vmriai~~~g~~at~mal~~ksi---yglwyl~adlvyiiifpqllcvl~m~~sntygalagy~~ 451 (591)
T KOG3761|consen 375 KLSFRPHASDKEIIIVMRIAIFCFGAMATAMALLIKSI---YGLWYLCADLVYIIIFPQLLCVLFMKGSNTYGALAGYAS 451 (591)
T ss_pred eeeeccCCCCceEEEEEEehhhhhhHHHHHHHHHHHHH---HHHHHHhhceeEeEeccceeeEEEecCCCcchhhhhhhe
Confidence 99999999999999999999999999998888765432 333333334444455666889999999999999999999
Q ss_pred HHHH
Q 004956 501 GCLL 504 (722)
Q Consensus 501 G~~~ 504 (722)
|+.+
T Consensus 452 gl~l 455 (591)
T KOG3761|consen 452 GLFL 455 (591)
T ss_pred eeEE
Confidence 8853
No 19
>PRK00701 manganese transport protein MntH; Reviewed
Probab=98.90 E-value=6.2e-06 Score=93.07 Aligned_cols=130 Identities=8% Similarity=0.204 Sum_probs=92.8
Q ss_pred CCCChHHHHHHHHHHHHhHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhhCchh
Q 004956 83 RNVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGPFWYASGATIQVLLFGVMAIEIKRKASHAHTVCEIVKARWGTAA 162 (722)
Q Consensus 83 Rsv~~~l~a~si~at~~sa~t~lg~~g~ay~~Gi~~~~w~~~G~~l~ill~~~la~~lr~~~~~~~Ti~E~l~~Ryg~~~ 162 (722)
|.+||+.+.+. +..+++++......+.+||++- .|.-+-.++...++-.++.|+-. -..+++.|.+++|||++.
T Consensus 35 ~~lGPG~l~a~---a~idpG~i~t~~~aGA~~Gy~L-LW~llls~~~~~~~Q~~~~Rlgi--vTG~~l~~~ir~~~~~~~ 108 (439)
T PRK00701 35 AFLGPAFLVAV---GYMDPGNWATNIQGGSQFGYTL-LWVILLSNLMAMLLQSLSAKLGI--ATGRDLAQACRDRYPRPV 108 (439)
T ss_pred HHcCcHHHhhh---heecchHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHHHHhHhhh--hcCCCHHHHHHHHCCchH
Confidence 34677765543 6788899999999999999996 56443332222222233344332 246789999999999988
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHhHhhhHHh--hccchH
Q 004956 163 HLVFLAFCFLTNIIVTAMLLLGGSAVVNALTGVNIYAASFLIPLGVIVYT--LAGGLK 218 (722)
Q Consensus 163 ~~v~~~~~li~~i~~~a~ql~g~a~vl~~l~Gi~~~~~~il~~~iv~iYT--~~GGlr 218 (722)
.....+...+.++.+...++.|.+..++.++|+|.+.++.+..+.+.++. ..+|.|
T Consensus 109 ~~~~~~~~~l~~~~~~~~e~~G~a~al~ll~gip~~~~v~i~~~~~~~~l~l~~~~y~ 166 (439)
T PRK00701 109 VWFLWIQAELAIMATDLAEVIGAAIALKLLFGIPLLQGALITALDTFLILMLQRRGFR 166 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 87777777788888899999999999999999998888777665444432 345544
No 20
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=98.52 E-value=0.0014 Score=73.26 Aligned_cols=128 Identities=14% Similarity=0.292 Sum_probs=92.0
Q ss_pred CChHHHHHHHHHHHHhHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhhCchhhH
Q 004956 85 VKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGPFWYASGATIQVLLFGVMAIEIKRKASHAHTVCEIVKARWGTAAHL 164 (722)
Q Consensus 85 v~~~l~a~si~at~~sa~t~lg~~g~ay~~Gi~~~~w~~~G~~l~ill~~~la~~lr~~~~~~~Ti~E~l~~Ryg~~~~~ 164 (722)
+||+.+.+. ++...+.+....+.+.+||++- .|.-+-..+...+.--+..|+-. -..++.+|-+++||+++...
T Consensus 20 lGPg~lva~---a~iDpg~~at~~~~Ga~~Gy~l-l~vills~l~~~~~Q~~~arLgi--vTG~~laq~ir~~y~~~~~~ 93 (416)
T COG1914 20 LGPGFLVAV---AYVDPGNIATSAQAGAQYGYSL-LWVILLSNLMAYILQELSARLGI--VTGKGLAEAIRERYLPGLGI 93 (416)
T ss_pred hCcHHHHHH---hccCchhHHhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH--HhCCcHHHHHHHHccchHHH
Confidence 677665543 5677888888888888888885 35333222211111111222221 24688999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHhHhhhHHhhccchH
Q 004956 165 VFLAFCFLTNIIVTAMLLLGGSAVVNALTGVNIYAASFLIPLGVIVYTLAGGLK 218 (722)
Q Consensus 165 v~~~~~li~~i~~~a~ql~g~a~vl~~l~Gi~~~~~~il~~~iv~iYT~~GGlr 218 (722)
...+...+.++.....++.|.+..++.++|+|...+.++.++.+.+--..+|.|
T Consensus 94 ~~~~~~~i~~~at~iae~~G~aial~ll~~ip~~~g~iItav~~~iil~~~~~r 147 (416)
T COG1914 94 LLWILAEIAGIATDIAEVAGIAIALNLLFGIPLIIGAVITAVDVLIILLLKGYR 147 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhcchH
Confidence 999988999998889999999999999999999999998887776555554333
No 21
>PRK11017 codB cytosine permease; Provisional
Probab=98.47 E-value=0.0027 Score=71.27 Aligned_cols=106 Identities=15% Similarity=0.054 Sum_probs=72.8
Q ss_pred CCCCHHHHHHHhhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHhHhhhHHhhccchHHHHHHHH
Q 004956 146 HAHTVCEIVKARWGTAAHLVFLAFCFLTNIIVTAMLLLGGSAVVNALTGVNIYAASFLIPLGVIVYTLAGGLKATFLASY 225 (722)
Q Consensus 146 ~~~Ti~E~l~~Ryg~~~~~v~~~~~li~~i~~~a~ql~g~a~vl~~l~Gi~~~~~~il~~~iv~iYT~~GGlrav~~TD~ 225 (722)
...+.+..-|.-||.+...+..++..+..+.+.+.|..-++..++.++|++.....++..++. .....-|.|+.-+-+.
T Consensus 69 ~G~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~~~~~~~~~i~~~l~-~~~~~~G~~~i~~~~~ 147 (404)
T PRK11017 69 TGLSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATGLDINLLIVLSGLLM-TVTAYFGISALTILSR 147 (404)
T ss_pred cCcCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 356778888888998887777777778888999999888888889999988877655555554 4455667888877666
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCChHHH
Q 004956 226 IHSVIVHVVLVIFVYLVYTASSELGSPSVM 255 (722)
Q Consensus 226 iQ~vi~li~~li~~~~v~~~~~~~GG~~~l 255 (722)
+-..++.+..+...+... .+.||++.+
T Consensus 148 ~~~p~~~~~~~~~~~~~~---~~~~g~~~~ 174 (404)
T PRK11017 148 IAVPAIALLGGYSVWLAV---NDVGGLDGL 174 (404)
T ss_pred HHHHHHHHHHHHHHHHHH---hccCchhhh
Confidence 655554443333333222 344665443
No 22
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=98.45 E-value=0.0002 Score=78.88 Aligned_cols=109 Identities=21% Similarity=0.364 Sum_probs=78.3
Q ss_pred HHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhhCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004956 108 SNVAWEYGVSGPFWYASGATIQVLLFGVMAIEIKRKASHAHTVCEIVKARWGTAAHLVFLAFCFLTNIIVTAMLLLGGSA 187 (722)
Q Consensus 108 ~g~ay~~Gi~~~~w~~~G~~l~ill~~~la~~lr~~~~~~~Ti~E~l~~Ryg~~~~~v~~~~~li~~i~~~a~ql~g~a~ 187 (722)
+..+.+||++- .|.-+-.++....+--++.|+-- -...++.|.+++|||++......+...+.++.+...++.|.+.
T Consensus 5 ~~aGA~~Gy~L-lw~lll~~~~~~~~q~~~~R~~~--~Tg~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~ 81 (358)
T PF01566_consen 5 TQAGAQYGYSL-LWVLLLSNLLKYVFQEMAARLGI--VTGKGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAI 81 (358)
T ss_pred HHhHHHHCHHH-HHHHHHHHHHHHHHHHHHHHHhh--hcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566778775 46433222222222222333322 3578999999999999988888888888899999999999999
Q ss_pred HHHHhhCChhHHHHHHHhHhhhHHhh--ccchHH
Q 004956 188 VVNALTGVNIYAASFLIPLGVIVYTL--AGGLKA 219 (722)
Q Consensus 188 vl~~l~Gi~~~~~~il~~~iv~iYT~--~GGlra 219 (722)
.++.++|+|.+..+++..+.+.+... .|+.|-
T Consensus 82 al~ll~g~~~~~~~~~~~~~~~~ll~~~~~~y~~ 115 (358)
T PF01566_consen 82 ALNLLFGIPLWIWVLLVAVIAILLLWLSSGGYRR 115 (358)
T ss_pred HHHhhcCCCcHHHHHHHHHHHHHHHHHHhccchH
Confidence 99999999999888888777776666 677553
No 23
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=98.43 E-value=0.0013 Score=73.22 Aligned_cols=129 Identities=11% Similarity=0.204 Sum_probs=84.5
Q ss_pred CCChHHHHHHHHHHHHhHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhhCchhh
Q 004956 84 NVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGPFWYASGATIQVLLFGVMAIEIKRKASHAHTVCEIVKARWGTAAH 163 (722)
Q Consensus 84 sv~~~l~a~si~at~~sa~t~lg~~g~ay~~Gi~~~~w~~~G~~l~ill~~~la~~lr~~~~~~~Ti~E~l~~Ryg~~~~ 163 (722)
.+||+.+. .+++.+..++......+.++|+.- .|..+-..+...++--++.|+-. -..++..|.+++||+++.+
T Consensus 6 ~lGPg~lv---a~a~idPG~i~t~~~aGa~fGy~L-LW~llls~~~~~~~Q~~aaRlg~--vTg~~l~~~~r~~~~~~~~ 79 (390)
T TIGR01197 6 FIGPGFLM---SIAYIDPGNYSTDLQAGAAAGYKL-LWVLLLSNIMALLLQRLCARLGV--VTGLDLAEVCREHYPKVPR 79 (390)
T ss_pred HhChHHHH---HHHhcCchHHHHHHHHHHHhCHHH-HHHHHHHHHHHHHHHHHHHHhee--ecCCCHHHHHHHHCCCchH
Confidence 35666654 345677888888888899999985 56544333322223333444332 2457899999999998766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHhH--hhhHHhhccchH
Q 004956 164 LVFLAFCFLTNIIVTAMLLLGGSAVVNALTGVNIYAASFLIPL--GVIVYTLAGGLK 218 (722)
Q Consensus 164 ~v~~~~~li~~i~~~a~ql~g~a~vl~~l~Gi~~~~~~il~~~--iv~iYT~~GGlr 218 (722)
....+...+..+.....++.|.+..++.++|+|.+.++++..+ +..++...+|.|
T Consensus 80 ~~~~~~~~l~ii~~~~~e~~G~a~al~ll~g~p~~~~v~~~~~~~~~~~~~~~~~yr 136 (390)
T TIGR01197 80 ITLWILAELAIIATDMAEVIGTAIALNLLSHIPLWGGVLITIVDVFLFLFLDKPGLR 136 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhCCce
Confidence 5544444455566677889999999999999998887766333 333344456554
No 24
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=98.24 E-value=0.013 Score=65.72 Aligned_cols=151 Identities=13% Similarity=0.122 Sum_probs=106.1
Q ss_pred CCCChHHHHHHHHHHHHhHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH-H--HHHHHHHHhhcCCC-C--CHHHHHHH
Q 004956 83 RNVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGPFWYASGATIQVLL-F--GVMAIEIKRKASHA-H--TVCEIVKA 156 (722)
Q Consensus 83 Rsv~~~l~a~si~at~~sa~t~lg~~g~ay~~Gi~~~~w~~~G~~l~ill-~--~~la~~lr~~~~~~-~--Ti~E~l~~ 156 (722)
++++++...++..++-++...+.|.+.....-|..+.+|..+...++... + ..++.+.|+|..+. . .+..++++
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GGpGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi~~ 124 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVGVATAIAIGGPGAVFWMWVTAFIGMATKFVESTLAQKYRERDADGVFRGGPMYYIKK 124 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCEecChHHHHHH
Confidence 45999999999999999999999999998888888878988877776654 3 36777777642211 1 34567777
Q ss_pred hhCc-hhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhCChhHHHHHHHhHhhhHHhhccchHHHHHHHHHHHHHHHHH
Q 004956 157 RWGT-AAHLVFLAFCFLTN-IIVTAMLLLGGSAVVNALTGVNIYAASFLIPLGVIVYTLAGGLKATFLASYIHSVIVHVV 234 (722)
Q Consensus 157 Ryg~-~~~~v~~~~~li~~-i~~~a~ql~g~a~vl~~l~Gi~~~~~~il~~~iv~iYT~~GGlrav~~TD~iQ~vi~li~ 234 (722)
..++ +...+++++ ++.. ......|....+.+++...++|.+...+++ ++...|++.||+|.+.-.-..-.-+|.+.
T Consensus 125 gl~~k~lg~lfa~~-~i~~f~~~~~~Q~nsi~~~~~~~~~~~~~v~~i~l-~~l~~~vi~GGik~Ia~v~~~lvP~m~~~ 202 (425)
T TIGR00835 125 GLGMRWLAVLFAVF-LIASFGIGNMVQANAIASALSNAFNVPKLVTGIVL-TVLTALIIFGGLKRIAKISSVVVPFMALL 202 (425)
T ss_pred HhCccHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHcCCcHHHHHHHH-HHHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 7764 445555555 4333 223578888888888866788887766665 44557899999998766554444444443
Q ss_pred H
Q 004956 235 L 235 (722)
Q Consensus 235 ~ 235 (722)
.
T Consensus 203 Y 203 (425)
T TIGR00835 203 Y 203 (425)
T ss_pred H
Confidence 3
No 25
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=98.23 E-value=0.00063 Score=75.76 Aligned_cols=139 Identities=11% Similarity=0.119 Sum_probs=105.3
Q ss_pred CCCChHHHHHHHHHHHHhHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH-H--HHHHHHHHhhcCC---CCCHHHHHHH
Q 004956 83 RNVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGPFWYASGATIQVLL-F--GVMAIEIKRKASH---AHTVCEIVKA 156 (722)
Q Consensus 83 Rsv~~~l~a~si~at~~sa~t~lg~~g~ay~~Gi~~~~w~~~G~~l~ill-~--~~la~~lr~~~~~---~~Ti~E~l~~ 156 (722)
+++.++...++-.|+-++...+.|.+.....-|.++.+|..+.+.+++.. + ..++.+.|+|..+ .-.+.-++++
T Consensus 17 g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GGPGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP~yyi~~ 96 (416)
T PF01235_consen 17 GGISPFQALCTALAGTVGTGNIAGVATAIAIGGPGAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGPMYYIEK 96 (416)
T ss_pred CCcChHHHHHHHHHhccCcchHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecHHHHHHH
Confidence 47888888888899999999999999999999999989998888887766 4 3778777765322 1237788888
Q ss_pred hhCchh-hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhCChhHHHHHHHhHhhhHHhhccchHHHHH
Q 004956 157 RWGTAA-HLVFLAFCFLTNIIV-TAMLLLGGSAVVNALTGVNIYAASFLIPLGVIVYTLAGGLKATFL 222 (722)
Q Consensus 157 Ryg~~~-~~v~~~~~li~~i~~-~a~ql~g~a~vl~~l~Gi~~~~~~il~~~iv~iYT~~GGlrav~~ 222 (722)
..|++. ..+++++.+.+.... ...|....+..++.-+|+|.+...+++.++ +..+++||+|.+.-
T Consensus 97 gl~~k~la~~fai~~~~~~~~~~~~~Q~nsi~~~~~~~f~i~~~~~gi~l~~l-~~~vi~GGikrI~~ 163 (416)
T PF01235_consen 97 GLGSKWLAILFAIFLIIAFGIGFNMVQANSIADALSSAFGIPPWITGIILAIL-VALVIFGGIKRIAK 163 (416)
T ss_pred HhccchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccccHHHHHHHHHHH-HHHHHHcchhHHHH
Confidence 888653 455666644443332 578888888999988999988766665554 46899999997653
No 26
>PRK11375 allantoin permease; Provisional
Probab=98.19 E-value=0.027 Score=64.79 Aligned_cols=98 Identities=19% Similarity=0.103 Sum_probs=62.4
Q ss_pred CCCCHHHHHHHhhCchhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhh-----------------CChh-HHHHHHHhH
Q 004956 146 HAHTVCEIVKARWGTAAHLVFLAFC-FLTNIIVTAMLLLGGSAVVNALT-----------------GVNI-YAASFLIPL 206 (722)
Q Consensus 146 ~~~Ti~E~l~~Ryg~~~~~v~~~~~-li~~i~~~a~ql~g~a~vl~~l~-----------------Gi~~-~~~~il~~~ 206 (722)
.-.+.+-+.|.-||.+...+..++- ++..+.+.+.|..-++..++.+. |++. ...++++..
T Consensus 87 ~Gl~~~v~sR~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~ 166 (484)
T PRK11375 87 YGVPFAMILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFW 166 (484)
T ss_pred cCCChhHhHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHHHHHHH
Confidence 3466777888889977644555544 56778899999888777776443 2221 123333333
Q ss_pred hhhHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004956 207 GVIVYTLAGGLKATFLASYIHSVIVHVVLVIFVYLVY 243 (722)
Q Consensus 207 iv~iYT~~GGlrav~~TD~iQ~vi~li~~li~~~~v~ 243 (722)
++......-|.|..-+-..+-..++++..+...+.+.
T Consensus 167 ~l~~~~~~~g~~~i~~l~~i~~p~~~i~~~~~~~~~~ 203 (484)
T PRK11375 167 LVNVGIGFGGGKVLNKFTAILNPCIYIVFGGMAIWAI 203 (484)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444556678888888777777777666666555443
No 27
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=97.97 E-value=0.055 Score=60.58 Aligned_cols=96 Identities=13% Similarity=0.141 Sum_probs=64.6
Q ss_pred CCCCHHHHHHHhhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hC--ChhHHHHHHHhHhhhHHhhccchHH
Q 004956 146 HAHTVCEIVKARWGTAAHLVFLAFCFLTNIIVTAMLLLGGSAVVNAL----TG--VNIYAASFLIPLGVIVYTLAGGLKA 219 (722)
Q Consensus 146 ~~~Ti~E~l~~Ryg~~~~~v~~~~~li~~i~~~a~ql~g~a~vl~~l----~G--i~~~~~~il~~~iv~iYT~~GGlra 219 (722)
...++.|+.++-+|+..+.+..+..++.....+.....+.+..++.. .+ .+......++.+.+..|...+|.|.
T Consensus 64 p~~~i~~~~~~~fGk~~G~ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~~~p~~~i~~lilv~il~~iv~~G~~~ 143 (397)
T TIGR00814 64 PCEDITEVVEEHFGKNWGILITLLYFFAIYPILLIYSVAITNDSASFLVNQLGTAPPLRGLLSLALILILVAIMSFGEKL 143 (397)
T ss_pred CCCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHhcHHH
Confidence 37999999999999998887777666666555555555555554433 33 3344334444555558999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004956 220 TFLASYIHSVIVHVVLVIFVYL 241 (722)
Q Consensus 220 v~~TD~iQ~vi~li~~li~~~~ 241 (722)
+....-+-...+++.++.+...
T Consensus 144 i~r~~~il~~~~ii~l~~l~~~ 165 (397)
T TIGR00814 144 LFKIMGPLVFPLVLILVLLSLY 165 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888777776665555544443
No 28
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=97.97 E-value=0.012 Score=65.37 Aligned_cols=144 Identities=13% Similarity=0.083 Sum_probs=107.2
Q ss_pred hcCCCCChHHHHHHHHHHHHhHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH-H--HHHHHHHHhhcC-C--CCCHHHH
Q 004956 80 TAGRNVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGPFWYASGATIQVLL-F--GVMAIEIKRKAS-H--AHTVCEI 153 (722)
Q Consensus 80 ~AgRsv~~~l~a~si~at~~sa~t~lg~~g~ay~~Gi~~~~w~~~G~~l~ill-~--~~la~~lr~~~~-~--~~Ti~E~ 153 (722)
-..+.+.++..-++-.|+-.+...+-|.+.....-|..+.||..+-+.+++.- + ..++.+.|+|.. + .--+.=|
T Consensus 58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GGPGAvFWMWi~Al~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~yY 137 (452)
T COG1115 58 AGKGGVSSFQALMTSLAARVGTGNIAGVATAIALGGPGAVFWMWIVALFGMATKFAESTLAQKYRVKDKDGEYRGGPAYY 137 (452)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHhheeEeCCCCCCcCChHHH
Confidence 44566888888888899999999999999999999999889988777776654 3 377877776532 1 1246778
Q ss_pred HHHhhCchh-hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhCChhHHHHHHHhHhhhHHhhccchHHHHHHH
Q 004956 154 VKARWGTAA-HLVFLAFCFLTNI-IVTAMLLLGGSAVVNALTGVNIYAASFLIPLGVIVYTLAGGLKATFLAS 224 (722)
Q Consensus 154 l~~Ryg~~~-~~v~~~~~li~~i-~~~a~ql~g~a~vl~~l~Gi~~~~~~il~~~iv~iYT~~GGlrav~~TD 224 (722)
+++..|.+. ..++++..+++.- .....|-...+..++.-+|+|.+..-+++.+ +..++++||.|.+....
T Consensus 138 i~kGl~~r~l~v~FA~~li~afg~i~n~vQ~NsIa~a~~~af~~~~~~~gi~la~-l~~~VI~GGi~rIa~v~ 209 (452)
T COG1115 138 IEKGLGMRWLAVLFAFALIAAFGFIGNGVQSNSIASALANAFGIPPLVTGIVLAL-LVALVIFGGIKRIAKVS 209 (452)
T ss_pred HHhhcCCcHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHhcCCcHHHHHHHHHH-HHHHHHHcchHHHHHHH
Confidence 999998553 5556633333333 3568999999999999999998877666655 45799999999865443
No 29
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=97.91 E-value=0.083 Score=60.48 Aligned_cols=158 Identities=9% Similarity=0.070 Sum_probs=84.8
Q ss_pred CCCCChHHHHHHHHHHHHhHHHHHHHHHHHHHhCChHHHH-HHHHHHHHHHHHHHHHHHHHhhcCC-CCCHHHHHHHhhC
Q 004956 82 GRNVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGPFW-YASGATIQVLLFGVMAIEIKRKASH-AHTVCEIVKARWG 159 (722)
Q Consensus 82 gRsv~~~l~a~si~at~~sa~t~lg~~g~ay~~Gi~~~~w-~~~G~~l~ill~~~la~~lr~~~~~-~~Ti~E~l~~Ryg 159 (722)
.|+++.+-...-.+++-+++.-+......+..-|.....| +.++... .++.++...++-++.|+ .-...++.+++||
T Consensus 6 ~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~-~~~~al~~aEl~s~~P~~sGG~y~y~~~~~G 84 (473)
T TIGR00905 6 SKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVG-MLALAFVFAILATKKPELDGGIYAYAREGFG 84 (473)
T ss_pred CCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHH-HHHHHHHHHHHHhhCCCCCCChhhhHHhHcc
Confidence 4788888888888888888775544444333333332222 3333322 22233444455555577 7779999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC----ChhH--HHHHHHhHhhhHHhhccchHHHHHHHHHHHHHHHH
Q 004956 160 TAAHLVFLAFCFLTNIIVTAMLLLGGSAVVNALTG----VNIY--AASFLIPLGVIVYTLAGGLKATFLASYIHSVIVHV 233 (722)
Q Consensus 160 ~~~~~v~~~~~li~~i~~~a~ql~g~a~vl~~l~G----i~~~--~~~il~~~iv~iYT~~GGlrav~~TD~iQ~vi~li 233 (722)
+....+......+................++.+.+ .+.+ ....+..+....+....|.|.......+=++++++
T Consensus 85 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~ln~~Gi~~~~~i~~~~~~~~l~ 164 (473)
T TIGR00905 85 PYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGSGNPVPSILGASVLLWVFTFLVLRGVRQAAFINTITTIAKLI 164 (473)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 98776655544333322211111111222333332 1111 11122233345677778888887777776666665
Q ss_pred HHHHHHH
Q 004956 234 VLVIFVY 240 (722)
Q Consensus 234 ~~li~~~ 240 (722)
.++++.+
T Consensus 165 ~l~~~ii 171 (473)
T TIGR00905 165 PLFLFII 171 (473)
T ss_pred HHHHHHH
Confidence 5544444
No 30
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=97.90 E-value=0.027 Score=62.54 Aligned_cols=285 Identities=17% Similarity=0.140 Sum_probs=142.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhhCchhhHHHHHHHH
Q 004956 92 SVIVSQWTWAATILQSSNVAWEYGVSGPFWYASGATIQVLLFGVMAIEIKRKASHAHTVCEIVKARWGTAAHLVFLAFCF 171 (722)
Q Consensus 92 ~si~at~~sa~t~lg~~g~ay~~Gi~~~~w~~~G~~l~ill~~~la~~lr~~~~~~~Ti~E~l~~Ryg~~~~~v~~~~~l 171 (722)
+.++|-..++.-++--+..+++.|-.. .+..+|+.+.-+...+++.-.- ++...-.+.+++|+|++...++.+...
T Consensus 2 ~~lFamffGAGNlIfPp~lG~~aG~~~-~~a~lgf~ltgV~lpllgl~av---~~~gG~~~~l~~~~g~~f~~lf~~~~~ 77 (378)
T TIGR00796 2 FMLFALFFGAGNIIFPPMLGLAAGEHV-WTAALGFLLTGVGLPLLGLIAL---ALVGGGYDSLSARIGKVFGILFTVILY 77 (378)
T ss_pred hHHHHHHHhhhHHhhhHHHHHHhCccH-HHHHHHHHHHHHHHHHHHHhee---eecCCCHHHHHHHhChHHHHHHHHHHH
Confidence 467788889999999999999999763 1223355443332222222111 122346788999999987766544443
Q ss_pred HHH-----HHHHHHHHHHHHHHHHHhhCCh-hHHHHHHHhHhhhHHhhccchHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 004956 172 LTN-----IIVTAMLLLGGSAVVNALTGVN-IYAASFLIPLGVIVYTLAGGLKATFLASYIHSVI---VHVVLVIFVYLV 242 (722)
Q Consensus 172 i~~-----i~~~a~ql~g~a~vl~~l~Gi~-~~~~~il~~~iv~iYT~~GGlrav~~TD~iQ~vi---~li~~li~~~~v 242 (722)
+.. ++-++..=+-.+ ++.+++.+ ......+..++...-+..=-+|..-+.|.+|-+. +++.+.++....
T Consensus 78 l~iGP~~aiPRtaa~s~e~~--i~p~~~~~~~~~~l~i~siiff~i~~~l~~~~~k~~~~iGk~LTP~lLi~l~~lii~g 155 (378)
T TIGR00796 78 LTIGPLFAIPRTATVSFEMG--IAPLLHSPTSLLALFIFSLIFFAVVLLLSLNPSKLIDRVGKFLTPALLVTLLALIIKA 155 (378)
T ss_pred HHHHhchhhhHHHHHHHHHH--HHhccCcccchHHHHHHHHHHHHHHHHHHcCcccHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 322 222333222222 33444431 1122222333333333334456777777777554 344444443333
Q ss_pred HhhcccCCChHHHHHHHHHhhhhcccCCCCCCCCCCCCCCCCCCCCCcchhhhcchhhHHHHHHHHHhhcccccCcceeh
Q 004956 243 YTASSELGSPSVMYNRLVEVASKSRICQEPVSHAGQSCGPVNGNYKGSFLTILSSGGLVFGIINIVGNFGTVFVDNGYWV 322 (722)
Q Consensus 243 ~~~~~~~GG~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~P~~~~~~gs~~t~~s~~glifg~~~il~~fg~~~~dq~~~Q 322 (722)
+. +..|++..-.+...+ ..|.....-..|.||-...++.||+..+ ...
T Consensus 156 ~~--~p~g~~~~~~~~~~~------------------~~~f~~g~l~GY~TmD~laal~fg~iiv-~~i----------- 203 (378)
T TIGR00796 156 LL--WPAGPILAASGAYAS------------------QQAFSKGFLEGYLTMDALAALVFGIIVV-NAI----------- 203 (378)
T ss_pred HH--cCCCCcCCccccccc------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-----------
Confidence 21 112221100000000 0111000012456665445555654322 111
Q ss_pred hheeeCC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCccccCCCCchHHHHHHhhhhHHHHHHHHHHHHH
Q 004956 323 SAIAARP-SSTHKGYLLGGLVWFAVPFSLATSLGLGALALDL--PLTETEASHGLVPPATAIALMGKGGSILLLTMLFMA 399 (722)
Q Consensus 323 R~~aAk~-~~a~k~~~l~~~l~~~ip~~~~~~iGl~a~al~~--~l~~~~~~~~~v~p~~~~~llp~~l~gl~l~~i~aA 399 (722)
|...-|| ++..|..+.+|+.-.. .+..+..|++-..-.+ .+. +..|.+.++...+.+++++.+..++-+.++-|
T Consensus 204 ~~~g~~~~~~~~~~~i~~G~ia~i--~l~~vY~~L~~lGa~~~~~~~-~~~~~~~~l~~~a~~~~G~~G~~ll~i~v~lA 280 (378)
T TIGR00796 204 RSRGVTKPKKITKYTIKAGLIAAV--LLAFIYLSLFYLGATSAAAAG-DAVNGAQILSAYSQHLFGSLGSFLLGLIITLA 280 (378)
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCcHhhhc-ccCCcHHHHHHHHHHHcchhHHHHHHHHHHHH
Confidence 1222344 3445555555542111 1111123433222211 111 22257788889999999999999999999999
Q ss_pred HHhHHhHHHHHHHHHHHH
Q 004956 400 VTSAGSSELIAVSSLCTY 417 (722)
Q Consensus 400 ~~ST~ss~l~a~Ssi~t~ 417 (722)
++.|..+...+.|.-+.+
T Consensus 281 CLtT~iGli~~~a~~f~~ 298 (378)
T TIGR00796 281 CLTTAVGLTTACSEYFHK 298 (378)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999886665544
No 31
>PRK15049 L-asparagine permease; Provisional
Probab=97.88 E-value=0.097 Score=60.46 Aligned_cols=155 Identities=10% Similarity=0.047 Sum_probs=90.2
Q ss_pred CCCCChHHHHHHHHHHHHhHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhhCch
Q 004956 82 GRNVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGPFWYASGATIQVLLFGVMAIEIKRKASHAHTVCEIVKARWGTA 161 (722)
Q Consensus 82 gRsv~~~l~a~si~at~~sa~t~lg~~g~ay~~Gi~~~~w~~~G~~l~ill~~~la~~lr~~~~~~~Ti~E~l~~Ryg~~ 161 (722)
.|+++.+-+..-.+++-+++.-|++.......-|-+...-|.++..+.++...- ..++-.+.|..-+..++.++.+|+.
T Consensus 27 ~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp~~il~~li~~i~~~~v~~s-laELas~~P~aGg~y~y~~~~~G~~ 105 (499)
T PRK15049 27 HKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGPALALVYLICGLFSFFILRA-LGELVLHRPSSGSFVSYAREFLGEK 105 (499)
T ss_pred hccCCHhHhHHHhhhccccchHHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCCCCHHHHHHHHhCcH
Confidence 477888888777788888999999988888778876532233333222222222 2344445688999999999999998
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--h-CChhHHHHHHHhHhhhHHhhccchHHHHHHHHHHHHHHHHHHHHH
Q 004956 162 AHLVFLAFCFLTNIIVTAMLLLGGSAVVNAL--T-GVNIYAASFLIPLGVIVYTLAGGLKATFLASYIHSVIVHVVLVIF 238 (722)
Q Consensus 162 ~~~v~~~~~li~~i~~~a~ql~g~a~vl~~l--~-Gi~~~~~~il~~~iv~iYT~~GGlrav~~TD~iQ~vi~li~~li~ 238 (722)
...+......+..+...+.+..+.+..++.. . +.+.+...+++.+ +....-+-|.|.....+.+-++++++.++.+
T Consensus 106 ~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~iN~~gvk~~~~i~~~~~~iki~~l~~~ 184 (499)
T PRK15049 106 AAYVAGWMYFINWAMTGIVDITAVALYMHYWGAFGGVPQWVFALAALT-IVGTMNMIGVKWFAEMEFWFALIKVLAIVTF 184 (499)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666666555555444444444445544433 2 3444433222222 2223334456665555555555555444443
No 32
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=97.88 E-value=0.047 Score=62.04 Aligned_cols=113 Identities=11% Similarity=0.059 Sum_probs=79.0
Q ss_pred cCCCCChHHHHHHHHHHHHhHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhhCc
Q 004956 81 AGRNVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGPFWYASGATIQVLLFGVMAIEIKRKASHAHTVCEIVKARWGT 160 (722)
Q Consensus 81 AgRsv~~~l~a~si~at~~sa~t~lg~~g~ay~~Gi~~~~w~~~G~~l~ill~~~la~~lr~~~~~~~Ti~E~l~~Ryg~ 160 (722)
=.|+++.+.+..-.+++-+++.-+++........|-.....+.++.. ..++.+....++-++.|..-+..++.++.||+
T Consensus 10 ~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~~~~i~~~i~~v-~~~~~a~~~aEl~s~~P~~Gg~~~~~~~~~g~ 88 (452)
T TIGR01773 10 LPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGPAALLAYLLAGL-LVVFIMRMLGEMAVANPDTGSFSTYADDAIGR 88 (452)
T ss_pred HhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCCHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCCCHHHHHHHHhCc
Confidence 47889999988888888888888888777776777654222333322 22233333445544557788999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 004956 161 AAHLVFLAFCFLTNIIVTAMLLLGGSAVVNALTG 194 (722)
Q Consensus 161 ~~~~v~~~~~li~~i~~~a~ql~g~a~vl~~l~G 194 (722)
....+......+..+...+.+..+.+..++.+.+
T Consensus 89 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (452)
T TIGR01773 89 WAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFP 122 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8877777777777766677777777777776654
No 33
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=97.82 E-value=0.073 Score=59.60 Aligned_cols=134 Identities=15% Similarity=0.187 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhhCchhhHHHHHHHHHHHHHHHHHH
Q 004956 102 ATILQSSNVAWEYGVSGPFWYASGATIQVLLFGVMAIEIKRKASHAHTVCEIVKARWGTAAHLVFLAFCFLTNIIVTAML 181 (722)
Q Consensus 102 ~t~lg~~g~ay~~Gi~~~~w~~~G~~l~ill~~~la~~lr~~~~~~~Ti~E~l~~Ryg~~~~~v~~~~~li~~i~~~a~q 181 (722)
+..++.|-.+...|....................+-.++..+.++..++.|+.++-+|++.+.+..+..++..-..+.+.
T Consensus 19 AGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~g~~~~~~~~~~~~y~ll~AY 98 (394)
T PF03222_consen 19 AGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKKGGIVIGISYLFLLYALLVAY 98 (394)
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777666553221111111112222333334444556799999999999999998887776666666667778
Q ss_pred HHHHHHHHHHhhC------ChhHHHHHHHhHhhhHHhhccchHHHHHHHHHHHHHHHHHHHHHH
Q 004956 182 LLGGSAVVNALTG------VNIYAASFLIPLGVIVYTLAGGLKATFLASYIHSVIVHVVLVIFV 239 (722)
Q Consensus 182 l~g~a~vl~~l~G------i~~~~~~il~~~iv~iYT~~GGlrav~~TD~iQ~vi~li~~li~~ 239 (722)
+.+++.+++..++ ++.+.+.+++.++....... |.| ..|.++.+++..-++.+.
T Consensus 99 isg~g~~~~~~l~~~~~~~~~~~~~~~~f~~i~~~iv~~-g~~---~v~~~n~~lv~~~i~~~~ 158 (394)
T PF03222_consen 99 ISGGGSILSSLLGNQLGTDLSPWLSSLLFTIIFGGIVYF-GTK---AVDRINRVLVFGMIISFI 158 (394)
T ss_pred HHccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHh-hHH---HHHHHHHHHHHHHHHHHH
Confidence 8889999988865 45577777776666655544 455 446666555444333333
No 34
>TIGR00909 2A0306 amino acid transporter.
Probab=97.81 E-value=0.047 Score=61.48 Aligned_cols=158 Identities=12% Similarity=0.070 Sum_probs=97.3
Q ss_pred CCCCChHHHHHHHHHHHHhHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhhCch
Q 004956 82 GRNVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGPFWYASGATIQVLLFGVMAIEIKRKASHAHTVCEIVKARWGTA 161 (722)
Q Consensus 82 gRsv~~~l~a~si~at~~sa~t~lg~~g~ay~~Gi~~~~w~~~G~~l~ill~~~la~~lr~~~~~~~Ti~E~l~~Ryg~~ 161 (722)
.|+++.+-...-.+++-.++..+..........|....+.+.++.. .....++...++-++.|+.-...++.++.+|+.
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~l~~li~~~-~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~~ 80 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGPAVILSFVLAGL-TALFIALVYAELAAMLPVAGSPYTYAYEAMGEL 80 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCCHHHHHHHHHHH-HHHHHHHHHHHHHhhcCCCCcceeeHHHHhCcH
Confidence 3677877776666666666555544444343445554222223322 222344455566666677788999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC---C--hhHH-----------HHHHHhHhhhHHhhccchHHHHHHHH
Q 004956 162 AHLVFLAFCFLTNIIVTAMLLLGGSAVVNALTG---V--NIYA-----------ASFLIPLGVIVYTLAGGLKATFLASY 225 (722)
Q Consensus 162 ~~~v~~~~~li~~i~~~a~ql~g~a~vl~~l~G---i--~~~~-----------~~il~~~iv~iYT~~GGlrav~~TD~ 225 (722)
...+......+......+....+.+..++.+.+ . +.+. ...+..+++..+..+.|.|.....+.
T Consensus 81 ~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~~~~~ 160 (429)
T TIGR00909 81 TAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKESGKVND 160 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 888777777777766677777676666665543 2 2211 11234455566777788888888887
Q ss_pred HHHHHHHHHHHHHHH
Q 004956 226 IHSVIVHVVLVIFVY 240 (722)
Q Consensus 226 iQ~vi~li~~li~~~ 240 (722)
+=++++++.++++..
T Consensus 161 v~~~~~i~~l~~~~~ 175 (429)
T TIGR00909 161 ILVVLKVAALLLFAA 175 (429)
T ss_pred HHHHHHHHHHHHhhh
Confidence 777776665544333
No 35
>PRK10746 putative transport protein YifK; Provisional
Probab=97.79 E-value=0.13 Score=58.88 Aligned_cols=154 Identities=6% Similarity=-0.011 Sum_probs=94.6
Q ss_pred CCCCChHHHHHHHHHHHHhHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhhCch
Q 004956 82 GRNVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGPFWYASGATIQVLLFGVMAIEIKRKASHAHTVCEIVKARWGTA 161 (722)
Q Consensus 82 gRsv~~~l~a~si~at~~sa~t~lg~~g~ay~~Gi~~~~w~~~G~~l~ill~~~la~~lr~~~~~~~Ti~E~l~~Ryg~~ 161 (722)
.|+++..-+.+-.+++-+++.-|++.....-..|-+..+.|.++..+...+. ....++-.+.|..-+..++.++-+|+.
T Consensus 9 ~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp~~~l~~~i~g~~~~~v~-~~~aEl~~~~P~sGg~~~y~~~~~g~~ 87 (461)
T PRK10746 9 QRGLEARHIELIALGGTIGVGLFMGAASTLKWAGPSVLLAYIIAGLFVFFIM-RSMGEMLFLEPVTGSFAVYAHRYMSPF 87 (461)
T ss_pred hccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcChHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCCHHHHHHHHhCcH
Confidence 3788888877777888888888998888777777754223444332222222 222344444588889999999999998
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-ChhHHHHHHHhHhhhHHhhccchHHHHHHHHHHHHHHHHHHHH
Q 004956 162 AHLVFLAFCFLTNIIVTAMLLLGGSAVVNALTG-VNIYAASFLIPLGVIVYTLAGGLKATFLASYIHSVIVHVVLVI 237 (722)
Q Consensus 162 ~~~v~~~~~li~~i~~~a~ql~g~a~vl~~l~G-i~~~~~~il~~~iv~iYT~~GGlrav~~TD~iQ~vi~li~~li 237 (722)
..........+..+...+.++.+.+..++...+ .+.+....+ ...+....-+-|.|-....+..-+.++++.++.
T Consensus 88 ~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~~~~~~~~~~-~~~~~~~lN~~gv~~~~~~e~~~~~~ki~~i~~ 163 (461)
T PRK10746 88 FGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPEMAQWIPALI-AVALVALANLAAVRLYGEIEFWFAMIKVTTIIV 163 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 877777766666666667777777777776654 444332222 223333344445555555555545555444333
No 36
>PRK10249 phenylalanine transporter; Provisional
Probab=97.78 E-value=0.038 Score=63.05 Aligned_cols=154 Identities=10% Similarity=0.013 Sum_probs=94.5
Q ss_pred CCCCChHHHHHHHHHHHHhHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhhCch
Q 004956 82 GRNVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGPFWYASGATIQVLLFGVMAIEIKRKASHAHTVCEIVKARWGTA 161 (722)
Q Consensus 82 gRsv~~~l~a~si~at~~sa~t~lg~~g~ay~~Gi~~~~w~~~G~~l~ill~~~la~~lr~~~~~~~Ti~E~l~~Ryg~~ 161 (722)
.|+++.+-+.+-.+++-+++.-+++........|-....-|.++..+.. +.+....++-.+.|..-+..++.+++||+.
T Consensus 20 ~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp~~~l~~li~~~~~~-~~~~~~aEl~~~~P~~Gg~~~y~~~~~g~~ 98 (458)
T PRK10249 20 HRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGPAVLLGYGVAGIIAF-LIMRQLGEMVVEEPVSGSFAHFAYKYWGPF 98 (458)
T ss_pred hccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCcHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCCHHHHHHHHhChH
Confidence 3788888877777888888888888777666667654222333332222 222333444455688889999999999998
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-ChhHHHHHHHhHhhhHHhhccchHHHHHHHHHHHHHHHHHHHH
Q 004956 162 AHLVFLAFCFLTNIIVTAMLLLGGSAVVNALTG-VNIYAASFLIPLGVIVYTLAGGLKATFLASYIHSVIVHVVLVI 237 (722)
Q Consensus 162 ~~~v~~~~~li~~i~~~a~ql~g~a~vl~~l~G-i~~~~~~il~~~iv~iYT~~GGlrav~~TD~iQ~vi~li~~li 237 (722)
...+......+......+.+..+.+..++...+ .+.+... +..+.+....-+-|.|.....+.+-+++.++.++.
T Consensus 99 ~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~l~~~lN~~gv~~~~~i~~~~~~ikv~~i~~ 174 (458)
T PRK10249 99 AGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPDVPTWIWA-AAFFIIINAVNLVNVRLYGETEFWFALIKVLAIIG 174 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCcHHHHH-HHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHH
Confidence 887777766666666666777666666666554 3333222 22222233344456666666665555555543333
No 37
>PRK10238 aromatic amino acid transporter; Provisional
Probab=97.76 E-value=0.053 Score=61.82 Aligned_cols=155 Identities=15% Similarity=0.092 Sum_probs=101.2
Q ss_pred cCCCCChHHHHHHHHHHHHhHHHHHHHHHHHHHhCChHHHH-HHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhhC
Q 004956 81 AGRNVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGPFW-YASGATIQVLLFGVMAIEIKRKASHAHTVCEIVKARWG 159 (722)
Q Consensus 81 AgRsv~~~l~a~si~at~~sa~t~lg~~g~ay~~Gi~~~~w-~~~G~~l~ill~~~la~~lr~~~~~~~Ti~E~l~~Ryg 159 (722)
=.|+++.+-+.+-.+++-+++.-|++.....-+-|.+. .| |.++..+... .+.-..++-.+.|..-+..++.++.||
T Consensus 10 l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp~~-i~~~~i~gi~~~~-v~~s~aEl~s~~P~aGg~y~~~~~~~g 87 (456)
T PRK10238 10 LKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGPGI-ILGYAIAGFIAFL-IMRQLGEMVVEEPVAGSFSHFAYKYWG 87 (456)
T ss_pred hhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCcHH-HHHHHHHHHHHHH-HHHHHHHHHHhcCCCCCHHHHHHHHcC
Confidence 45888888877777777788887777777666667643 33 3333222222 222223444456888999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-ChhHHHHHHHhHhhhHHhhccchHHHHHHHHHHHHHHHHHHHHH
Q 004956 160 TAAHLVFLAFCFLTNIIVTAMLLLGGSAVVNALTG-VNIYAASFLIPLGVIVYTLAGGLKATFLASYIHSVIVHVVLVIF 238 (722)
Q Consensus 160 ~~~~~v~~~~~li~~i~~~a~ql~g~a~vl~~l~G-i~~~~~~il~~~iv~iYT~~GGlrav~~TD~iQ~vi~li~~li~ 238 (722)
+....+......+..+...+.+..+.+..++...+ .+.+... ++......+.-+.|.|.....+.+-+++.++.++++
T Consensus 88 ~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~i~~~~~~~lN~~gv~~~~~~~~~~~~iki~~i~~~ 166 (456)
T PRK10238 88 SFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPEIPTWVSA-AVFFVVINAINLTNVKVFGEMEFWFAIIKVIAVVAM 166 (456)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcHHHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888888777777777777777777777776654 4444332 223334455566678877777776666766555443
No 38
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=97.62 E-value=0.14 Score=58.24 Aligned_cols=94 Identities=13% Similarity=0.088 Sum_probs=64.7
Q ss_pred CCCHHHHHHHhhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hCC----h------hHHHHHHHhHhhhHHh
Q 004956 147 AHTVCEIVKARWGTAAHLVFLAFCFLTNIIVTAMLLLGGSAVVNAL----TGV----N------IYAASFLIPLGVIVYT 212 (722)
Q Consensus 147 ~~Ti~E~l~~Ryg~~~~~v~~~~~li~~i~~~a~ql~g~a~vl~~l----~Gi----~------~~~~~il~~~iv~iYT 212 (722)
-.+.+.+.|..||.+...+.+++..+..+.+.+.|..-++..++.+ +|- + ...+.+++..+.+..+
T Consensus 75 Gl~~~v~sR~~FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~ 154 (442)
T TIGR00800 75 GLPFPVLSRASFGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFL 154 (442)
T ss_pred CCCcchhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHH
Confidence 4566778889999887777788888888999999988887655444 332 1 2334445555555667
Q ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHH
Q 004956 213 LAGGLKATFLASYIHSVIVHVVLVIFVY 240 (722)
Q Consensus 213 ~~GGlrav~~TD~iQ~vi~li~~li~~~ 240 (722)
..+|.|..-..+..-..+.++.+++..+
T Consensus 155 ~~~g~~~~~~~~~~a~~~~~~~~~~~~~ 182 (442)
T TIGR00800 155 FFFGYKIRHLFEWLAVVPPFAAFGMLIW 182 (442)
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999998877777666665554444443
No 39
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=97.61 E-value=0.11 Score=58.35 Aligned_cols=94 Identities=14% Similarity=0.217 Sum_probs=71.6
Q ss_pred CHHHHHHHhh--CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHhHhhhHHhhccchHHHHHHHHH
Q 004956 149 TVCEIVKARW--GTAAHLVFLAFCFLTNIIVTAMLLLGGSAVVNALTGVNIYAASFLIPLGVIVYTLAGGLKATFLASYI 226 (722)
Q Consensus 149 Ti~E~l~~Ry--g~~~~~v~~~~~li~~i~~~a~ql~g~a~vl~~l~Gi~~~~~~il~~~iv~iYT~~GGlrav~~TD~i 226 (722)
-+|+.+-.|| |.+...+.++...++.+.+.+.+...++......+|.|.++.+++.++++.+-|+ -|.|..-.-+.+
T Consensus 80 Glpqmi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~~~~~~~~~ili~g~l~~l~~i-fG~r~l~~l~~~ 158 (442)
T COG1457 80 GLPQMILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSGTGLPVWAGILIIGVLMTLVTI-FGYRALHKLERI 158 (442)
T ss_pred CCChheeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccCCCCcHHHHHHHHHHHHHHHHH-HhHHHHHHHHHH
Confidence 3445555555 7888888899899999999999988888865555899999999998887765555 578888888888
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004956 227 HSVIVHVVLVIFVYLVY 243 (722)
Q Consensus 227 Q~vi~li~~li~~~~v~ 243 (722)
-...+.+..+.....++
T Consensus 159 a~~~~~~lf~~l~~~~~ 175 (442)
T COG1457 159 AVPLLLLLFLYLLALLF 175 (442)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 87777766666665543
No 40
>PRK11387 S-methylmethionine transporter; Provisional
Probab=97.59 E-value=0.24 Score=56.68 Aligned_cols=154 Identities=13% Similarity=0.094 Sum_probs=89.3
Q ss_pred CCCCChHHHHHHHHHHHHhHHHHHHHHHHHHHhCChHHHH-HHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhhCc
Q 004956 82 GRNVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGPFW-YASGATIQVLLFGVMAIEIKRKASHAHTVCEIVKARWGT 160 (722)
Q Consensus 82 gRsv~~~l~a~si~at~~sa~t~lg~~g~ay~~Gi~~~~w-~~~G~~l~ill~~~la~~lr~~~~~~~Ti~E~l~~Ryg~ 160 (722)
.|+++.+-...-.+++-++++-+.+........|-.+..+ +.++..+..+ .+....++-++.|+.-...++.++-||+
T Consensus 13 ~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~-~~~~~aELas~~P~aGG~y~y~~~~~g~ 91 (471)
T PRK11387 13 KRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYL-VMQCLGELSVAMPETGAFHVYAARYLGP 91 (471)
T ss_pred hhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCCCCHHHHHHHhcCh
Confidence 5889988887777888888887777666666667533222 3333222222 2222234444557788899999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-ChhHHHHHHHhHhhhHHhhccchHHHHHHHHHHHHHHHHHHHH
Q 004956 161 AAHLVFLAFCFLTNIIVTAMLLLGGSAVVNALTG-VNIYAASFLIPLGVIVYTLAGGLKATFLASYIHSVIVHVVLVI 237 (722)
Q Consensus 161 ~~~~v~~~~~li~~i~~~a~ql~g~a~vl~~l~G-i~~~~~~il~~~iv~iYT~~GGlrav~~TD~iQ~vi~li~~li 237 (722)
....+......+......+....+.+..++...+ .+.+....++ .+.....-+-|.|-....+.+-++++++.++.
T Consensus 92 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~in~~gvk~~~~~~~~~~~~ki~~l~~ 168 (471)
T PRK11387 92 ATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFPQVPVWPWCLLF-CALIFGLNVVSTRFFAEGEFWFSLIKVVTILA 168 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCcHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 8776666666666665555555555555554443 3333222222 22233344456666666655555555554443
No 41
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=97.57 E-value=0.19 Score=55.78 Aligned_cols=135 Identities=13% Similarity=0.032 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhhCchhhHHHHHHHHHHHHHHHHHH
Q 004956 102 ATILQSSNVAWEYGVSGPFWYASGATIQVLLFGVMAIEIKRKASHAHTVCEIVKARWGTAAHLVFLAFCFLTNIIVTAML 181 (722)
Q Consensus 102 ~t~lg~~g~ay~~Gi~~~~w~~~G~~l~ill~~~la~~lr~~~~~~~Ti~E~l~~Ryg~~~~~v~~~~~li~~i~~~a~q 181 (722)
+..++.|+...+.|........+...+.......+..++-++.|+..+..|+.++-+|+..+.+..+..++.....++..
T Consensus 13 aGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~~~~~~~~~~~~~G~~~g~~~~~~~~~~~~~~~~ay 92 (381)
T TIGR00837 13 AGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPGGASFNTIAKDLLGKTGNIIAGLSLLFVLYILTYAY 92 (381)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666655555432211111111222223344445545557789999999999999988776654444443444444
Q ss_pred HHHHHHHHHHhhC------ChhHHHHHHHhHhhhHHhhccchHHHHHHHHHHHHHHHHHHHH
Q 004956 182 LLGGSAVVNALTG------VNIYAASFLIPLGVIVYTLAGGLKATFLASYIHSVIVHVVLVI 237 (722)
Q Consensus 182 l~g~a~vl~~l~G------i~~~~~~il~~~iv~iYT~~GGlrav~~TD~iQ~vi~li~~li 237 (722)
..+.+..++.+++ ++.+... +....++.|....|.|.+...+.+-++.+++.++.
T Consensus 93 ~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~v~~~l~~~G~~~~~~v~~i~~~~~l~~l~~ 153 (381)
T TIGR00837 93 ISGGGSILSRLIGEYFGFPWSARAIV-LIFTVLFGSFVWLSTSAVDRITRVLIFGKIIAFAL 153 (381)
T ss_pred HHccHHHHHHHHHHhcCCCccHHHHH-HHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHH
Confidence 4444555554432 3444433 33344556888888887666655555554444333
No 42
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=97.57 E-value=0.13 Score=57.85 Aligned_cols=346 Identities=16% Similarity=0.154 Sum_probs=176.7
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhhCchhhHHH
Q 004956 87 TGLIASVIVSQWTWAATILQSSNVAWEYGVSGPFWYASGATIQVLLFGVMAIEIKRKASHAHTVCEIVKARWGTAAHLVF 166 (722)
Q Consensus 87 ~~l~a~si~at~~sa~t~lg~~g~ay~~Gi~~~~w~~~G~~l~ill~~~la~~lr~~~~~~~Ti~E~l~~Ryg~~~~~v~ 166 (722)
...++++++|-..+|.-++=-+..+++.|-.. ++-.+|..+.-+...+++.-.-.+ .+. +..| +.+|=|++-..++
T Consensus 5 ~l~ig~~LFamFFGAGNLIFPp~lG~~aG~~~-~~a~~GF~lTgV~lP~Lgvia~~~-~~~-~~~~-l~~~v~~~f~~if 80 (427)
T PF05525_consen 5 ILIIGFALFAMFFGAGNLIFPPFLGQQAGSNW-WPAMIGFLLTGVGLPLLGVIAVAK-SGG-GIED-LASRVGPKFALIF 80 (427)
T ss_pred hhhHHHHHHHHHhCCccccchHHHHHHhcchH-HHHHHHHHHHHHHHHHHHHHHHhh-cCC-CHHH-HhcccCcHHHHHH
Confidence 45788999999999999999999999999885 333445444333333333222222 122 4444 4455565544443
Q ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHHHhhCChhHHHHHHHhHhhhHHhhccchHHHHHHHHHH---HHHHHHHHHHH
Q 004956 167 LAFCFLTN-----IIVTAMLLLGGSAVVNALTGVNIYAASFLIPLGVIVYTLAGGLKATFLASYIH---SVIVHVVLVIF 238 (722)
Q Consensus 167 ~~~~li~~-----i~~~a~ql~g~a~vl~~l~Gi~~~~~~il~~~iv~iYT~~GGlrav~~TD~iQ---~vi~li~~li~ 238 (722)
.....+.. ++-++..=+ ...++.+++.+.....++..++...-+..-=+|-.-..|.+- +=++++.+.++
T Consensus 81 ~~~i~l~IGP~~aiPRtaa~sf--e~~i~p~~~~~~~~~~~ifs~iFF~i~~~l~~~p~kivd~iGk~LTP~LL~~l~il 158 (427)
T PF05525_consen 81 TILIYLSIGPLFAIPRTAAVSF--EMGIAPFFPENSNISLLIFSIIFFAITYLLSLNPSKIVDRIGKFLTPILLILLAIL 158 (427)
T ss_pred HHHHHHHHHhcccCcchhhhhH--HHhhhccCCcccccchhhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHH
Confidence 33222221 233322111 112333444344555555555544445555567777777655 33444444444
Q ss_pred HHHHHhhcccCCChHHHHHHHHHhhhhcccCCCCCCCCCCCCCCCCCCCCCcchhhhcchhhHHHHHHHHHhhcccccCc
Q 004956 239 VYLVYTASSELGSPSVMYNRLVEVASKSRICQEPVSHAGQSCGPVNGNYKGSFLTILSSGGLVFGIINIVGNFGTVFVDN 318 (722)
Q Consensus 239 ~~~v~~~~~~~GG~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~P~~~~~~gs~~t~~s~~glifg~~~il~~fg~~~~dq 318 (722)
.+..+. +..|.+.+..+...+ +|........|.||-.-.++.|+.+.+-
T Consensus 159 ii~~i~--~p~g~~~~~~~~y~~-------------------~~f~~Gf~eGY~TMD~laal~Fg~iIi~---------- 207 (427)
T PF05525_consen 159 IIKGIF--SPIGPPQAPSGAYAS-------------------NPFFKGFLEGYQTMDALAALAFGIIIIN---------- 207 (427)
T ss_pred HHHHHH--cCCCCccccchhhhh-------------------hHHHHHHHHHHhhhhHHHHHHHHHHHHH----------
Confidence 443332 233433322111110 2221111125777765555666643221
Q ss_pred ceehhheeeCC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCccccCCCCchHHHHHHhhhhHHHHHHHHHH
Q 004956 319 GYWVSAIAARP-SSTHKGYLLGGLVWFAVPFSLATSLGLGALALD-LPLTETEASHGLVPPATAIALMGKGGSILLLTML 396 (722)
Q Consensus 319 ~~~QR~~aAk~-~~a~k~~~l~~~l~~~ip~~~~~~iGl~a~al~-~~l~~~~~~~~~v~p~~~~~llp~~l~gl~l~~i 396 (722)
+.-|| ..+| ++..|....+++.-... +...-.|++-..-. .+.-+++.|..+.+-....+++|+.+..++-+.+
T Consensus 208 ~i~~~--g~~~~k~~~~~~~~ag~ia~~l--L~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv 283 (427)
T PF05525_consen 208 AIRQK--GYKDKKEIKKYTIKAGLIAGIL--LALIYGGLAYLGATSSGSFPDDINGAELLSQIANHLFGSAGQILLGIIV 283 (427)
T ss_pred HHHHh--CCCCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHHcChhHHHHHHHHH
Confidence 11233 2233 34445444444432111 11112343322211 1111234567788999999999999999999999
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHhhhhcCCCCCcchhhHhhhHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHhhh
Q 004956 397 FMAVTSAGSSELIAVSSLCTYDIYRTYINPDASGEKILKVSRAVILGFGCFMGFLAVILNKAGVSLGWMYLAMGVLIGSA 476 (722)
Q Consensus 397 ~aA~~ST~ss~l~a~Ssi~t~DIy~~~i~p~as~k~ll~vsRi~vvv~~i~~~~~a~~~~~~~i~l~~l~~~~g~~~~~~ 476 (722)
+.|++.|.-+...+.|.-+.+.. |+.+- |..++++.+++..++.. . .+..+.+..=....+.+..
T Consensus 284 ~lACLTTaIGL~~a~a~yf~~~~------~kisY-------~~~v~i~~i~S~~ian~-G-l~~Ii~~s~PiL~~iYP~~ 348 (427)
T PF05525_consen 284 FLACLTTAIGLISACAEYFSELF------PKISY-------KVWVIIFTIFSFIIANL-G-LDQIIKISVPILMFIYPVA 348 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh------cccCh-------HHHHHHHHHHHHHHHHh-C-HHHHHHHHHHHHHHHhHHH
Confidence 99999999998888777665432 23232 44455666777777642 1 1111333333333444444
Q ss_pred HHHhhhhhccCC
Q 004956 477 VLPIAFMLLWRK 488 (722)
Q Consensus 477 ~~plllgl~Wkr 488 (722)
..-+++.++-|.
T Consensus 349 IvLIll~l~~~~ 360 (427)
T PF05525_consen 349 IVLILLNLFDKF 360 (427)
T ss_pred HHHHHHHHHHHH
Confidence 444566666554
No 43
>PRK09950 putative transporter; Provisional
Probab=97.56 E-value=0.21 Score=57.43 Aligned_cols=59 Identities=19% Similarity=0.120 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCChh----HHHHHHHhHhhhHHhhccch-HHHHHHHHHHHHHHHH
Q 004956 172 LTNIIVTAMLLLGGSAVVNALTGVNI----YAASFLIPLGVIVYTLAGGL-KATFLASYIHSVIVHV 233 (722)
Q Consensus 172 i~~i~~~a~ql~g~a~vl~~l~Gi~~----~~~~il~~~iv~iYT~~GGl-rav~~TD~iQ~vi~li 233 (722)
.+.+...+.|+ +..++.++|++. +..++++..++...+..-|+ |++-+-.-+...+.+.
T Consensus 202 atSLGlg~~qi---~~gl~~l~Gi~~~~~~~~~ii~vi~~if~~S~~~Gl~kGIk~LS~~N~~la~~ 265 (506)
T PRK09950 202 TISLVVTAATF---TRGLSALTGLPNNFTVQAFVILLSGVIFCLSSYIGIDNGLQRLSKMVGWGAFL 265 (506)
T ss_pred HHHHHhHHHHH---HHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33344444554 455777888664 33333444444455677788 8888887777555443
No 44
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=97.54 E-value=0.28 Score=56.13 Aligned_cols=157 Identities=11% Similarity=0.010 Sum_probs=93.0
Q ss_pred cCCCCChHHHHHHHHHHHHhHHHHHHHHHHHHHhCChHHHH-HHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhhC
Q 004956 81 AGRNVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGPFW-YASGATIQVLLFGVMAIEIKRKASHAHTVCEIVKARWG 159 (722)
Q Consensus 81 AgRsv~~~l~a~si~at~~sa~t~lg~~g~ay~~Gi~~~~w-~~~G~~l~ill~~~la~~lr~~~~~~~Ti~E~l~~Ryg 159 (722)
=.|+++.+-...-.+.+.++++-+++......+.|-+. .| +.++..+.+. .+....++-...+...+..++.+++||
T Consensus 18 l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp~~-i~~~~i~~i~~~~-~~~s~aEl~s~~~~~~~~~~ya~~~~g 95 (469)
T PRK11049 18 LRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGPSI-IFVYMIIGFMLFF-VMRAMGELLLSNLEYKSFSDFASDLLG 95 (469)
T ss_pred hhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCcHH-HHHHHHHHHHHHH-HHHHHHHHHHhcCCCCcHHHHHHHHhC
Confidence 56888887776666888888888888777777778754 33 2233222221 122223443333566678899999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-ChhHHHHHHHhHhhhHHhhccchHHHHHHHHHHHHHHHHHHHHH
Q 004956 160 TAAHLVFLAFCFLTNIIVTAMLLLGGSAVVNALTG-VNIYAASFLIPLGVIVYTLAGGLKATFLASYIHSVIVHVVLVIF 238 (722)
Q Consensus 160 ~~~~~v~~~~~li~~i~~~a~ql~g~a~vl~~l~G-i~~~~~~il~~~iv~iYT~~GGlrav~~TD~iQ~vi~li~~li~ 238 (722)
+....+......+...........+.+..++...+ .+.+....+ .+.+....-+-|.|-....+.+-+++.++.++.+
T Consensus 96 ~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~~~~~~~~~~-~~~~~~~iN~~g~~~~~~i~~~~~~~kl~~l~~~ 174 (469)
T PRK11049 96 PWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFPDLSDWVASLA-VVLLLLSLNLATVKMFGEMEFWFAMIKIVAIVAL 174 (469)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 98877777766666654444455555555665554 333322222 2223333444577777777766666665555544
Q ss_pred HH
Q 004956 239 VY 240 (722)
Q Consensus 239 ~~ 240 (722)
.+
T Consensus 175 ii 176 (469)
T PRK11049 175 IV 176 (469)
T ss_pred HH
Confidence 43
No 45
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=97.48 E-value=0.29 Score=54.90 Aligned_cols=123 Identities=15% Similarity=0.079 Sum_probs=70.9
Q ss_pred HHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004956 110 VAWEYGVSGPFWYASGATIQVLLFGVMAIEIKRKASHAHTVCEIVKARWGTAAHLVFLAFCFLTNIIVTAMLLLGGSAVV 189 (722)
Q Consensus 110 ~ay~~Gi~~~~w~~~G~~l~ill~~~la~~lr~~~~~~~Ti~E~l~~Ryg~~~~~v~~~~~li~~i~~~a~ql~g~a~vl 189 (722)
....-|.....|+.++..+..+..++.-.++-++.|+.-...++.++-+|++...+......+......+......+..+
T Consensus 24 ~~~~~G~~~~~~~~i~~~~~~l~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (426)
T PF13520_consen 24 AAASAGPSAILAWIIAALLFFLPIALSYAELSSAYPSAGGIYVWVSRAFGPFWGFIVGWLYWVAYILSLASVASSFASYL 103 (426)
T ss_dssp HHTCTGCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCeeeehhhhcccccchhcccceeEEEeeccccccccchhhhh
Confidence 33345666544554444333233444445665556899999999999999998888877777777776655544455545
Q ss_pred HHhhCCh----hHHH--HHHHhHhhhHHhhccchHHHHHHHHHHHHHHH
Q 004956 190 NALTGVN----IYAA--SFLIPLGVIVYTLAGGLKATFLASYIHSVIVH 232 (722)
Q Consensus 190 ~~l~Gi~----~~~~--~il~~~iv~iYT~~GGlrav~~TD~iQ~vi~l 232 (722)
....+.+ .+.. +-++.+....-..+-|.|...+...+=+++.+
T Consensus 104 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i 152 (426)
T PF13520_consen 104 LSLFGPDLNPSPWPQFLIAIILILLFTLLNLLGIKLSGKIQNILTVIKI 152 (426)
T ss_dssp TTTTTGGGTCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred hhccccccccccchheeeeecccccceEeeechhhhhhhhhhhhhhhhh
Confidence 4444321 1111 12222333334455667777666666665555
No 46
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=97.42 E-value=0.39 Score=54.95 Aligned_cols=153 Identities=17% Similarity=0.034 Sum_probs=85.4
Q ss_pred CCCChHHHHHHHHHHHHhHHHHHHHHHHHHHhCChHHHH-HHHHHHHHHHHHHHHHHHHHhhcCC-CCCHHHHHHHhhCc
Q 004956 83 RNVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGPFW-YASGATIQVLLFGVMAIEIKRKASH-AHTVCEIVKARWGT 160 (722)
Q Consensus 83 Rsv~~~l~a~si~at~~sa~t~lg~~g~ay~~Gi~~~~w-~~~G~~l~ill~~~la~~lr~~~~~-~~Ti~E~l~~Ryg~ 160 (722)
|+++.+-...-.+++-++++-+.+.......-|-.+..| +.++..+. ++.+....++-++.|+ .-...++.++.+|+
T Consensus 2 r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~-~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g~ 80 (478)
T TIGR00913 2 KSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSII-YCVMQSLGEMATFYPVVSGSFATYASRFVDP 80 (478)
T ss_pred CCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCCCCCHHHHHHHHcCc
Confidence 667776666666666666666666666655666443223 33332222 2222223444444463 34678999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-ChhHHHHHHHhHhhhHHhhccchHHHHHHHHHHHHHHHHHHHH
Q 004956 161 AAHLVFLAFCFLTNIIVTAMLLLGGSAVVNALTG-VNIYAASFLIPLGVIVYTLAGGLKATFLASYIHSVIVHVVLVI 237 (722)
Q Consensus 161 ~~~~v~~~~~li~~i~~~a~ql~g~a~vl~~l~G-i~~~~~~il~~~iv~iYT~~GGlrav~~TD~iQ~vi~li~~li 237 (722)
....+......+.++...+....+.+..++...+ .+...... +...+....-.-|.|.....+.+-++++++.++.
T Consensus 81 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~in~~gv~~~~~~~~~~~~~ki~~l~~ 157 (478)
T TIGR00913 81 AFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTDKVNPAVWIA-IFYVFIVIINLFGVKGYGEAEFWFSSIKILAIIG 157 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 8887777777777777777777777777775543 33322221 1122222334445666555555445444444433
No 47
>PRK10655 potE putrescine transporter; Provisional
Probab=97.41 E-value=0.38 Score=54.45 Aligned_cols=155 Identities=9% Similarity=0.006 Sum_probs=77.0
Q ss_pred CCCCChHHHHHHHHHHHHhHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhhCch
Q 004956 82 GRNVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGPFWYASGATIQVLLFGVMAIEIKRKASHAHTVCEIVKARWGTA 161 (722)
Q Consensus 82 gRsv~~~l~a~si~at~~sa~t~lg~~g~ay~~Gi~~~~w~~~G~~l~ill~~~la~~lr~~~~~~~Ti~E~l~~Ryg~~ 161 (722)
.|+++.+-...-.+++-+++.-+..... .++.|-.+.+.+.++.. ..++.++...++-.+.|+.-...++.++.||+.
T Consensus 5 ~~~l~~~~~~~l~vg~~iGsGif~~p~~-~~~~G~~~~~~w~i~~~-~~~~~a~~~aeL~~~~P~~GG~y~y~~~~~G~~ 82 (438)
T PRK10655 5 SNKMGVVQLTILTAVNMMGSGIIMLPTK-LAQVGTISILSWLVTAV-GSMALAYAFAKCGMFSRKSGGMGGYAEYAFGKS 82 (438)
T ss_pred cCcccHHHHHHHHHHhhhhhHHHHhHHH-HHHhhHHHHHHHHHHHH-HHHHHHHHHHHHhhhCCCCCchHHHHHHHcCcc
Confidence 4667777776666777777665554333 34456543221222222 222223333444445577788899999999998
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCh--hH-HHH-HHHhHhhhHHhhccchHHHHHHHHHHHHHHHHHHHH
Q 004956 162 AHLVFLAFCFLTNIIVTAMLLLGGSAVVNALTGVN--IY-AAS-FLIPLGVIVYTLAGGLKATFLASYIHSVIVHVVLVI 237 (722)
Q Consensus 162 ~~~v~~~~~li~~i~~~a~ql~g~a~vl~~l~Gi~--~~-~~~-il~~~iv~iYT~~GGlrav~~TD~iQ~vi~li~~li 237 (722)
...+......+.++......-.+.+.-+..+++.+ .. ..+ .+..+.+..+.-+.|.|-...-+.+-.+.+++.+++
T Consensus 83 ~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~ln~~g~~~~~~i~~i~~~~~l~~l~~ 162 (438)
T PRK10655 83 GNFMANYTYGVSLLIANVAIAISAVGYGTELFGATLSPVQICLATIGVLWLCTVANFGGARITGQISSVTVWGVIIPVVG 162 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 77666655444443322111122222333344422 11 111 122222334455667776655555544444443333
Q ss_pred H
Q 004956 238 F 238 (722)
Q Consensus 238 ~ 238 (722)
+
T Consensus 163 ~ 163 (438)
T PRK10655 163 L 163 (438)
T ss_pred H
Confidence 3
No 48
>PRK11021 putative transporter; Provisional
Probab=97.41 E-value=0.36 Score=54.17 Aligned_cols=109 Identities=12% Similarity=0.057 Sum_probs=60.5
Q ss_pred ChHHHHHHHHHHHHhHHHHHHHHHHHHHhCChHHHH-HHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhhCchhhH
Q 004956 86 KTGLIASVIVSQWTWAATILQSSNVAWEYGVSGPFW-YASGATIQVLLFGVMAIEIKRKASHAHTVCEIVKARWGTAAHL 164 (722)
Q Consensus 86 ~~~l~a~si~at~~sa~t~lg~~g~ay~~Gi~~~~w-~~~G~~l~ill~~~la~~lr~~~~~~~Ti~E~l~~Ryg~~~~~ 164 (722)
+.|-...-.+++-+++.-|..........|-+. .| +.++. +..+..++...++-++.|+.-...++.++.||+....
T Consensus 2 g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~~~-~~~~~i~~-~~~~~~al~~aEl~s~~P~aGG~y~y~~~~~G~~~gf 79 (410)
T PRK11021 2 GLWQGIGLLSTSLLGTGVFAVPALAALVAGNNS-LWAWPLLI-LLIFPIAIVFARLGRHFPHAGGPAHFVGMAFGPRLGR 79 (410)
T ss_pred cHHHHHHHHHHHHHhhHHHHhHHHHHHhcCchH-HHHHHHHH-HHHHHHHHHHHHHHHhCCCCCCHHHhHHHHhCchhHH
Confidence 344444455677777777777666555556543 33 22332 2233334444555556688889999999999998766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCh
Q 004956 165 VFLAFCFLTNIIVTAMLLLGGSAVVNALTGVN 196 (722)
Q Consensus 165 v~~~~~li~~i~~~a~ql~g~a~vl~~l~Gi~ 196 (722)
.......+.............+..++.+.+.+
T Consensus 80 ~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (410)
T PRK11021 80 VTGWLFLSVIPVGLPAALQIAAGFGQALFGWS 111 (410)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCC
Confidence 65554443322222222222233445555544
No 49
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=97.40 E-value=0.37 Score=54.13 Aligned_cols=137 Identities=12% Similarity=0.082 Sum_probs=77.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhhCchhhHHHHHHHH
Q 004956 92 SVIVSQWTWAATILQSSNVAWEYGVSGPFWYASGATIQVLLFGVMAIEIKRKASHAHTVCEIVKARWGTAAHLVFLAFCF 171 (722)
Q Consensus 92 ~si~at~~sa~t~lg~~g~ay~~Gi~~~~w~~~G~~l~ill~~~la~~lr~~~~~~~Ti~E~l~~Ryg~~~~~v~~~~~l 171 (722)
+.+++|-+|+. .++.|-.+-..|.....-..+.....+...+.+-.+...+.++..++.+..|+-+|++.+.+..+..+
T Consensus 10 ~li~GTaIGAG-mLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~~~~~~~~a~~~LG~~g~~i~~~~y~ 88 (403)
T PRK15132 10 FIVAGTTIGAG-MLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQWLTGFSMM 88 (403)
T ss_pred HHHHhcchhHH-HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhChHHHHHHHHHHH
Confidence 33445555443 45566555554433211011111111122233333344444566889999999999999888777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh------CChhHHHHHHHhHhhhHHhhccchHHHHHHHHHHHHHHHH
Q 004956 172 LTNIIVTAMLLLGGSAVVNALT------GVNIYAASFLIPLGVIVYTLAGGLKATFLASYIHSVIVHV 233 (722)
Q Consensus 172 i~~i~~~a~ql~g~a~vl~~l~------Gi~~~~~~il~~~iv~iYT~~GGlrav~~TD~iQ~vi~li 233 (722)
+.....+.+...+++.+++... +++...+.+++.++... .+..|.|. .|.+..+++..
T Consensus 89 fl~y~ll~AYisg~g~il~~~l~~~~~~~i~~~~~~l~F~~~~~~-iv~~g~~~---v~~~n~~L~~~ 152 (403)
T PRK15132 89 FLMYALTAAYISGAGELLASSISDWTGISMSPTAGVLLFTLVAGG-VVCVGTSS---VDLFNRFLFSA 152 (403)
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHhccCCCChHHHHHHHHHHHHH-HHhccHHH---HHHHHHHHHHH
Confidence 6665666777777777666554 35666666666666555 55556675 46666655443
No 50
>PRK10483 tryptophan permease; Provisional
Probab=97.40 E-value=0.31 Score=54.79 Aligned_cols=127 Identities=17% Similarity=0.042 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhhCchhhHHHHHHHHHHHHHHHHHH
Q 004956 102 ATILQSSNVAWEYGVSGPFWYASGATIQVLLFGVMAIEIKRKASHAHTVCEIVKARWGTAAHLVFLAFCFLTNIIVTAML 181 (722)
Q Consensus 102 ~t~lg~~g~ay~~Gi~~~~w~~~G~~l~ill~~~la~~lr~~~~~~~Ti~E~l~~Ryg~~~~~v~~~~~li~~i~~~a~q 181 (722)
+..++.|-.....|+....-..+...+.+..-+++.-+...+.++..++..+-|+-.|+..+.+..+..++..-..+.+-
T Consensus 27 aGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~g~~~~tma~~~LG~~g~~i~~~s~lfl~Y~Ll~AY 106 (414)
T PRK10483 27 AGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLGKGWNVVNGISIAFVLYILTYAY 106 (414)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666555542211111222222223344445444446677888888888899877765444333333335556
Q ss_pred HHHHHHHHHHhh-----CChhHHHHHHHhHhhhHHhhccchHHHHHHHHHHHHHHH
Q 004956 182 LLGGSAVVNALT-----GVNIYAASFLIPLGVIVYTLAGGLKATFLASYIHSVIVH 232 (722)
Q Consensus 182 l~g~a~vl~~l~-----Gi~~~~~~il~~~iv~iYT~~GGlrav~~TD~iQ~vi~l 232 (722)
+.+++.+++..+ ++|.+.+.+++.++....... |.|++ |.+..+++.
T Consensus 107 isg~g~il~~~l~~~~~~i~~~~~~llF~~~~~~iv~~-gt~~v---d~~n~~l~~ 158 (414)
T PRK10483 107 ISASGSILHHTFAEMSLNVPARAAGFGFALLVAFVVWL-STKAV---SRMTAIVLG 158 (414)
T ss_pred HhCcHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHh-hhhHH---HHHHHHHHH
Confidence 778888888776 568888888887777665544 55655 555555443
No 51
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=97.33 E-value=0.49 Score=54.40 Aligned_cols=62 Identities=21% Similarity=0.181 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCChhH----HHHHHHhHhhhHHhhccch-HHHHHHHHHHHHHHHHHH
Q 004956 171 FLTNIIVTAMLLLGGSAVVNALTGVNIY----AASFLIPLGVIVYTLAGGL-KATFLASYIHSVIVHVVL 235 (722)
Q Consensus 171 li~~i~~~a~ql~g~a~vl~~l~Gi~~~----~~~il~~~iv~iYT~~GGl-rav~~TD~iQ~vi~li~~ 235 (722)
+.+.+...+.|+ +..++.++|++.. ..++++..++...+..-|+ |++-+-.-+...+.+..+
T Consensus 204 vatSLGlg~~qi---~~gl~~l~Gi~~~~~~~~~ii~~i~~if~~S~~~Gl~kGIk~LS~~N~~la~~ll 270 (504)
T PRK03356 204 MGTSLGLATPLV---TECMQWLFGIPHTLQLDAIIITCWIILNAICVACGLQKGVRIASDVRSYLSFLML 270 (504)
T ss_pred HHHHHHhHHHHH---HHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555 4457788886643 3333333444455666676 787777777665554433
No 52
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=97.33 E-value=0.078 Score=56.85 Aligned_cols=91 Identities=14% Similarity=0.229 Sum_probs=66.0
Q ss_pred cCCCCCHHHHHHHhhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHhHhhhHHhhccchHHHHHH
Q 004956 144 ASHAHTVCEIVKARWGTAAHLVFLAFCFLTNIIVTAMLLLGGSAVVNALTGVNIYAASFLIPLGVIVYTLAGGLKATFLA 223 (722)
Q Consensus 144 ~~~~~Ti~E~l~~Ryg~~~~~v~~~~~li~~i~~~a~ql~g~a~vl~~l~Gi~~~~~~il~~~iv~iYT~~GGlrav~~T 223 (722)
.-|+++..|.++.-.|++...+.-.+.++..+..+..++.|++..++...|+|+|.+.+++...+.+--..++.++..-.
T Consensus 62 ~f~a~~y~~~~~~v~~~~~~ki~d~~iif~lf~~~vVM~AGags~~~e~~~lP~wiGali~i~~v~i~lfl~~vegi~tv 141 (349)
T COG3949 62 KFNATSYREILKYVSGPKFAKIIDIIIIFFLFSTAVVMLAGAGSLLEEMFGLPYWIGALIIILLVLILLFLGRVEGIITV 141 (349)
T ss_pred HhcccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHhCccHHHHHHHHHHHHHHHHHHhcccceeee
Confidence 36899999999999999877776666666666666777777787999999999999966666656555556666665555
Q ss_pred HHHHHHHHHHH
Q 004956 224 SYIHSVIVHVV 234 (722)
Q Consensus 224 D~iQ~vi~li~ 234 (722)
..+=.=++++.
T Consensus 142 n~iI~P~LIi~ 152 (349)
T COG3949 142 NGIITPFLIII 152 (349)
T ss_pred heeHHHHHHHH
Confidence 44444444433
No 53
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=97.32 E-value=0.51 Score=54.00 Aligned_cols=157 Identities=11% Similarity=0.107 Sum_probs=81.6
Q ss_pred CCCChHHHHHHHHHHHHhHHHHHHHHHHHHHhCChHHHH-HHHHHHHHHHHHHHHHHHHHhhcCCCC-CHHHHHHHhhCc
Q 004956 83 RNVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGPFW-YASGATIQVLLFGVMAIEIKRKASHAH-TVCEIVKARWGT 160 (722)
Q Consensus 83 Rsv~~~l~a~si~at~~sa~t~lg~~g~ay~~Gi~~~~w-~~~G~~l~ill~~~la~~lr~~~~~~~-Ti~E~l~~Ryg~ 160 (722)
|+++.+-...-.+++-+++.-+......+...|..+..+ +.++. +..++.+....++-++.|+.. ...++.++.||+
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~-~~~~~~al~~aeL~s~~P~~gGG~y~y~~~~fG~ 79 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITG-VGMLALAFSFQNLANKKPELDGGVYSYAKAGFGP 79 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHH-HHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcCc
Confidence 567777666666777777776665555555556443222 22222 222333344445555557765 899999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-----ChhH-HHHHHHhHhhhHHhhccchHHHHHHHHHHHHHHHHH
Q 004956 161 AAHLVFLAFCFLTNIIVTAMLLLGGSAVVNALTG-----VNIY-AASFLIPLGVIVYTLAGGLKATFLASYIHSVIVHVV 234 (722)
Q Consensus 161 ~~~~v~~~~~li~~i~~~a~ql~g~a~vl~~l~G-----i~~~-~~~il~~~iv~iYT~~GGlrav~~TD~iQ~vi~li~ 234 (722)
....+......+................++...+ .+.. ..+.+..+....+...-|.|.....+.+-++++++.
T Consensus 80 ~~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~~i~~~~ki~~ 159 (468)
T TIGR03810 80 FMGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGGGNNPPSIIGASVLLWCVHFLVLRGVEGAAFINTITTIAKLVP 159 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 8776665544333322211111111112222222 1111 111222222344555678887777777666666655
Q ss_pred HHHHHH
Q 004956 235 LVIFVY 240 (722)
Q Consensus 235 ~li~~~ 240 (722)
++.+..
T Consensus 160 l~~~ii 165 (468)
T TIGR03810 160 LFVFIV 165 (468)
T ss_pred HHHHHH
Confidence 554443
No 54
>PRK09928 choline transport protein BetT; Provisional
Probab=97.22 E-value=0.28 Score=57.99 Aligned_cols=96 Identities=14% Similarity=0.037 Sum_probs=47.5
Q ss_pred hhheeeC-Ch-hhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHhc-CC---CCc-cccCCCCchHHHHHHh-hhhHHHHHH
Q 004956 322 VSAIAAR-PS-STHKGYLLGGLVWFA-VPFSLATSLGLGALALD-LP---LTE-TEASHGLVPPATAIAL-MGKGGSILL 392 (722)
Q Consensus 322 QR~~aAk-~~-~a~k~~~l~~~l~~~-ip~~~~~~iGl~a~al~-~~---l~~-~~~~~~~v~p~~~~~l-lp~~l~gl~ 392 (722)
.-.|-|| ++ ++.|-.+++.++.-. ..++...+.|=.+..+. .+ +.. ...+++.++..+..++ ++.....+.
T Consensus 336 VGlFIARISRGRTIREfilgvllvPsl~~~~WfsIfGgsal~l~~~g~~~l~~~~~~~~~~alf~~l~~lP~~~i~~~l~ 415 (679)
T PRK09928 336 VGLFLARISRGRTIRQFVLGTLIIPFTFTLLWLSIFGNSALYEIIHGNAAFAEEAMAHPERGFYSLLAQYPAFTFSASVA 415 (679)
T ss_pred HHHHHhhhcCCccHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCccHHHHhhcchhhHHHHHHHhCcHHHHHHHHH
Confidence 4445566 54 678877776654311 11111122343333322 11 100 0113444444444433 224444455
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHHHH
Q 004956 393 LTMLFMAVTSAGSSELIAVSSLCTY 417 (722)
Q Consensus 393 l~~i~aA~~ST~ss~l~a~Ssi~t~ 417 (722)
++.++.-...|+||....++++.++
T Consensus 416 ~il~~iFfvTSaDS~s~Vla~lts~ 440 (679)
T PRK09928 416 TITGLLFYVTSADSGALVLGNFTSK 440 (679)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHcC
Confidence 5555556667889988888888775
No 55
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=97.17 E-value=0.67 Score=52.48 Aligned_cols=98 Identities=9% Similarity=-0.019 Sum_probs=59.5
Q ss_pred HHHHHHhhcCCCCCHHHHHHHhhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHhHhhhHHhhcc
Q 004956 136 MAIEIKRKASHAHTVCEIVKARWGTAAHLVFLAFCFLTNIIVTAMLLLGGSAVVNALTGVNIYAASFLIPLGVIVYTLAG 215 (722)
Q Consensus 136 la~~lr~~~~~~~Ti~E~l~~Ryg~~~~~v~~~~~li~~i~~~a~ql~g~a~vl~~l~Gi~~~~~~il~~~iv~iYT~~G 215 (722)
...++-.+.|+.-....+.++.||+....+......+......+....+.+..++.+++........++.+.+..+.-+-
T Consensus 59 ~~aEl~s~~P~~Gg~y~~~~~~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~~~~~~~~~~~~~~~~ln~~ 138 (442)
T TIGR00908 59 SLAELSTMIPTAGGGYGFARRAFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPVGPGWLAALVFYIVFIGINIL 138 (442)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHH
Confidence 34455555688889999999999998887777777777666666666677777776665322222222222233344445
Q ss_pred chHHHHHHHHHHHHHHHH
Q 004956 216 GLKATFLASYIHSVIVHV 233 (722)
Q Consensus 216 Glrav~~TD~iQ~vi~li 233 (722)
|.|.....+.+-++++++
T Consensus 139 g~~~~~~i~~~~~~~~~~ 156 (442)
T TIGR00908 139 GVGEAAKLEFVVTAVAII 156 (442)
T ss_pred HHHHHHhHHHHHHHHHHH
Confidence 666665555444444433
No 56
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=97.16 E-value=0.74 Score=52.74 Aligned_cols=156 Identities=15% Similarity=0.113 Sum_probs=99.6
Q ss_pred CCCCChHHHHHHHHHHHHhHHHHHHHHHHHHHhCChHHH-HHHHHHHHHHHHHHHH--HHHHHhhcCCCCCHHHHHHHhh
Q 004956 82 GRNVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGPF-WYASGATIQVLLFGVM--AIEIKRKASHAHTVCEIVKARW 158 (722)
Q Consensus 82 gRsv~~~l~a~si~at~~sa~t~lg~~g~ay~~Gi~~~~-w~~~G~~l~ill~~~l--a~~lr~~~~~~~Ti~E~l~~Ry 158 (722)
.|+++...+.+=-.+.-++..-|+|+...-.+-|-.+.+ -|.+. +..++..+ .-++--..|..-+... ...||
T Consensus 43 kR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~---G~~vy~vm~sLGEma~~~P~sGsF~~-ya~rf 118 (541)
T COG0833 43 KRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLII---GIMVYFVMQSLGELAVFYPVSGSFST-YATRF 118 (541)
T ss_pred hhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHH---HHHHHHHHHHHHHHHhhcCCCCchhh-hhhhh
Confidence 478888777776677788888899999999999988743 24333 23222221 1233223342222333 34566
Q ss_pred -CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--ChhHHHHHHHhHhhhHHhhccchHHHHHHHHHHHHHHHHHH
Q 004956 159 -GTAAHLVFLAFCFLTNIIVTAMLLLGGSAVVNALTG--VNIYAASFLIPLGVIVYTLAGGLKATFLASYIHSVIVHVVL 235 (722)
Q Consensus 159 -g~~~~~v~~~~~li~~i~~~a~ql~g~a~vl~~l~G--i~~~~~~il~~~iv~iYT~~GGlrav~~TD~iQ~vi~li~~ 235 (722)
++...........+......+.++.+.+.+++.-+. +|.+.-+.++.+++.+.-+ -|.|+--=+++.-+.++++.+
T Consensus 119 vdpa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~~v~~~~w~~iF~~~i~~iN~-~~Vk~fGE~Efw~s~iKV~~i 197 (541)
T COG0833 119 VDPAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFPDTVPPWIWIAIFLVLIFLLNL-FGVKGFGETEFWFSSIKVLTI 197 (541)
T ss_pred cCchHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCCCCChHHHHHHHHHHHHHHHH-hcccccceehHHHHHHHHHHH
Confidence 444455566666677778899999999999999862 4655555555444444433 467777778888888887766
Q ss_pred HHHHHHH
Q 004956 236 VIFVYLV 242 (722)
Q Consensus 236 li~~~~v 242 (722)
+.+.+..
T Consensus 198 i~Fii~g 204 (541)
T COG0833 198 IGFIILG 204 (541)
T ss_pred HHHHHHH
Confidence 6665543
No 57
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=97.08 E-value=0.49 Score=53.75 Aligned_cols=33 Identities=12% Similarity=0.167 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHH
Q 004956 386 KGGSILLLTMLFMAVTSAGSSELIAVSSLCTYD 418 (722)
Q Consensus 386 ~~l~gl~l~~i~aA~~ST~ss~l~a~Ssi~t~D 418 (722)
+....+.++.++--...|+||...+++++.+++
T Consensus 356 ~i~~~l~~il~~if~vTs~DS~s~vla~~~s~~ 388 (453)
T TIGR00842 356 TITSALALIVIIIFFITSADSGALVLANTSSRG 388 (453)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 445555555566666789999999999888754
No 58
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=97.07 E-value=0.15 Score=58.44 Aligned_cols=98 Identities=24% Similarity=0.245 Sum_probs=51.1
Q ss_pred ehhheeeC-Ch-hhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcC--CCC--c-cccCCCCchHHHHHHh-hhhHHHHH
Q 004956 321 WVSAIAAR-PS-STHKGYLLGGLVWFAV-PFSLATSLGLGALALDL--PLT--E-TEASHGLVPPATAIAL-MGKGGSIL 391 (722)
Q Consensus 321 ~QR~~aAk-~~-~a~k~~~l~~~l~~~i-p~~~~~~iGl~a~al~~--~l~--~-~~~~~~~v~p~~~~~l-lp~~l~gl 391 (722)
+.-.|-|| ++ ++.|-.+++.++.-.+ .++...+.|=.+..++. ..+ + .+.+++.+.-.+..++ +++.+..+
T Consensus 318 fvG~FiArISkGRTIRE~il~~~~~psl~~~~wf~ifGg~al~~~~~g~~~~~~~~~~g~~~a~~~~l~~lP~~~i~~~~ 397 (485)
T PF02028_consen 318 FVGLFIARISKGRTIREFILGVLLVPSLFCFLWFSIFGGYALYLQLSGAGDLAAANEQGPEAALFAFLEQLPLSKILSIL 397 (485)
T ss_dssp HHHHHHHHCTTTSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSS-HHHHHHH-HHHHHHHHHHTSTTHHHHHHH
T ss_pred HHHHHHhhhcCCcCHHHHHHHHHHhhHHHHHHHHHHHCchHHhhHhhhhhhHHHHhhcchhhHHHHHHHHhhHHHHHHHH
Confidence 34556666 54 6778777766543111 11111123333232221 111 0 1223333443343332 23556666
Q ss_pred HHHHHHHHHHhHHhHHHHHHHHHHHHH
Q 004956 392 LLTMLFMAVTSAGSSELIAVSSLCTYD 418 (722)
Q Consensus 392 ~l~~i~aA~~ST~ss~l~a~Ssi~t~D 418 (722)
.++.++.-...|+||...++|++.+++
T Consensus 398 ~lil~~~f~vTs~DS~~~~la~~s~~~ 424 (485)
T PF02028_consen 398 FLILIFIFFVTSADSATYVLAMLSSKG 424 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHcCC
Confidence 677777777889999999999998876
No 59
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=97.05 E-value=0.71 Score=52.09 Aligned_cols=344 Identities=17% Similarity=0.200 Sum_probs=168.3
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhCChHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhhCchhhHH
Q 004956 87 TGLIASVIVSQWTWAATILQSSNVAWEYGVSGPFWYA-SGATIQVLLFGVMAIEIKRKASHAHTVCEIVKARWGTAAHLV 165 (722)
Q Consensus 87 ~~l~a~si~at~~sa~t~lg~~g~ay~~Gi~~~~w~~-~G~~l~ill~~~la~~lr~~~~~~~Ti~E~l~~Ryg~~~~~v 165 (722)
...+++.++|=..||.-++=-+..+++.|-.. |.+ +|..+.-+...+++.-.-.| .+ .++.| +.+|-|++-..+
T Consensus 10 ~l~iG~~LFamFFGAGNLIFPp~LG~~aG~~~--~~a~~GF~iT~VglPlLgiiava~-~~-g~~~~-l~~rv~~~f~~~ 84 (439)
T PRK15433 10 IIALGFMTFALFVGAGNIIFPPMVGLQAGEHV--WTAAFGFLITAVGLPVLTVVALAK-VG-GGVDS-LSTPIGKVAGVL 84 (439)
T ss_pred HHHHHHHHHHHHhcCcchhccHHHHHHhcchH--HHHHHHHHHHHHHHHHHHHHHHhh-cC-CCHHH-HhhhcchHHHHH
Confidence 36788999999999999999999999999884 443 34433222223332222122 12 24444 456666665554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HhhCChhHHHHHHHhHhhhHHhhccchHHHHHHHHHH---HHHHHHHHHHH
Q 004956 166 FLAFCFLTNIIVTAMLLLGGSAVVN----ALTGVNIYAASFLIPLGVIVYTLAGGLKATFLASYIH---SVIVHVVLVIF 238 (722)
Q Consensus 166 ~~~~~li~~i~~~a~ql~g~a~vl~----~l~Gi~~~~~~il~~~iv~iYT~~GGlrav~~TD~iQ---~vi~li~~li~ 238 (722)
+.+...++.=+.. ..=..++...+ .+++-+ ....++..++...-+..--+|---..|.+- +=++++.+.++
T Consensus 85 f~~~i~l~IGP~~-aiPRtaavsfEm~i~p~~~~~-~~~~~ifs~iFF~i~~~l~l~p~klvd~iGK~LTP~LL~~l~~l 162 (439)
T PRK15433 85 LATVCYLAVGPLF-ATPRTATVSFEVGIAPLTGDS-ALPLFIYSLVYFAIVILVSLYPGKLLDTVGNFLAPLKIIALVIL 162 (439)
T ss_pred HHHHHHHHHhhcc-ccCCccccchhheeeccCCcc-cHHHHHHHHHHHHHHHHHHcChhhHHHHhHHHHHHHHHHHHHHH
Confidence 4433332221111 01112222233 223321 233344444444445555567777777654 33344444444
Q ss_pred HHHHHhhcccCCChHHHHHHHHHhhhhcccCCCCCCCCCCCCCCCCCCCCCcchhhhcchhhHHHHHHHHHhhcccccCc
Q 004956 239 VYLVYTASSELGSPSVMYNRLVEVASKSRICQEPVSHAGQSCGPVNGNYKGSFLTILSSGGLVFGIINIVGNFGTVFVDN 318 (722)
Q Consensus 239 ~~~v~~~~~~~GG~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~P~~~~~~gs~~t~~s~~glifg~~~il~~fg~~~~dq 318 (722)
....+. +..|.+..-.+.-++ +|........|.||-.-.++.|+.+.+-.
T Consensus 163 ii~~i~--~p~g~~~~~~~~y~~-------------------~~f~~Gf~eGY~TMDalaal~Fg~iii~~--------- 212 (439)
T PRK15433 163 SVAAIV--WPAGSISTATEAYQN-------------------AAFSNGFVNGYLTMDTLGAMVFGIVIVNA--------- 212 (439)
T ss_pred HHHHHh--cCCCCCCCcchhhhh-------------------hhHHHHHHhhHHHHHHHHHHHHHHHHHHH---------
Confidence 433332 223432111010000 12211111257888665666666432211
Q ss_pred ceehhheeeCChhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCccccCCCCchHHHHHHhhhhHHHHHHHHHH
Q 004956 319 GYWVSAIAARPSST-HKGYLLGGLVWFAVPFSLATSLGLGALALDL-PLTETEASHGLVPPATAIALMGKGGSILLLTML 396 (722)
Q Consensus 319 ~~~QR~~aAk~~~a-~k~~~l~~~l~~~ip~~~~~~iGl~a~al~~-~l~~~~~~~~~v~p~~~~~llp~~l~gl~l~~i 396 (722)
. |...-+|++. .|....+|+.-. +...+ +-.|++-..-.. +.-++..|...++-..+.+.+++.+..+..+.+
T Consensus 213 -i--~~~G~~~~~~~~k~t~~ag~ia~-~~L~~-vY~gL~~lGa~s~~~~~~~~~g~~il~~~~~~~~G~~G~~ll~iiv 287 (439)
T PRK15433 213 -A--RSRGVTEARLLTRYTVWAGLMAG-VGLTL-LYLALFRLGSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALI 287 (439)
T ss_pred -H--HHcCCCCHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHhcCCcccccCCCcHhHHHHHHHHHHhCHHHHHHHHHHH
Confidence 1 2222233322 333333332211 11111 113333222111 111112255666667788899999999999999
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHhhhhcCCCCCcchhhHhhhHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHhhh
Q 004956 397 FMAVTSAGSSELIAVSSLCTYDIYRTYINPDASGEKILKVSRAVILGFGCFMGFLAVILNKAGVSLGWMYLAMGVLIGSA 476 (722)
Q Consensus 397 ~aA~~ST~ss~l~a~Ssi~t~DIy~~~i~p~as~k~ll~vsRi~vvv~~i~~~~~a~~~~~~~i~l~~l~~~~g~~~~~~ 476 (722)
+.|+..|+-+...+.+.-+.+.. | .+ -|..++++.+++..++.. .-.++ +.+.+=....+.+..
T Consensus 288 ~lACLTTaIGLi~a~a~~f~~~~------~-is-------Y~~~v~i~~l~S~~lSn~-G~~~I-I~~s~PiL~~iYP~~ 351 (439)
T PRK15433 288 FIACLVTAVGLTCACAEFFAQYV------P-LS-------YRTLVFILGGFSMVVSNL-GLSQL-IQISVPVLTAIYPPC 351 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc------C-Cc-------HHHHHHHHHHHHHHHHHh-HHHHH-HHHHHHHHHHHhHHH
Confidence 99999999999888877665432 1 11 145556666777776642 21122 455554444444444
Q ss_pred HHHhhhhhccCC
Q 004956 477 VLPIAFMLLWRK 488 (722)
Q Consensus 477 ~~plllgl~Wkr 488 (722)
..-++++++-|+
T Consensus 352 IvLill~l~~~~ 363 (439)
T PRK15433 352 IALVVLSFTRSW 363 (439)
T ss_pred HHHHHHHHHHHH
Confidence 444566776554
No 60
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=97.04 E-value=0.82 Score=51.07 Aligned_cols=95 Identities=13% Similarity=0.124 Sum_probs=69.5
Q ss_pred CCCHHHHHHHhhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC----C-hhHHHHHHHhHhhhHHhhccchHHHH
Q 004956 147 AHTVCEIVKARWGTAAHLVFLAFCFLTNIIVTAMLLLGGSAVVNALTG----V-NIYAASFLIPLGVIVYTLAGGLKATF 221 (722)
Q Consensus 147 ~~Ti~E~l~~Ryg~~~~~v~~~~~li~~i~~~a~ql~g~a~vl~~l~G----i-~~~~~~il~~~iv~iYT~~GGlrav~ 221 (722)
..+.+-.-|..||.+...+.+++..+..+.+.+.|...+++.++.+.+ . +....+.+.+ .+...+...|.|..-
T Consensus 57 Gl~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~~~~~~~~~~~i~~-~l~~~~~~~G~~~i~ 135 (386)
T TIGR02358 57 GLSAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLFGEESPMLWILIVG-ILVTLWLLSGPLAFV 135 (386)
T ss_pred CcCHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 466778888889988888888888899999999999888888887764 2 2333333333 345566678999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004956 222 LASYIHSVIVHVVLVIFVYLV 242 (722)
Q Consensus 222 ~TD~iQ~vi~li~~li~~~~v 242 (722)
+-+.+-..++++..+...+..
T Consensus 136 ~~~~~~~~~~~i~~~~~~~~~ 156 (386)
T TIGR02358 136 WLNNWSVWLLLIATLWLLVVV 156 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888777777666655443
No 61
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=96.99 E-value=0.25 Score=55.40 Aligned_cols=157 Identities=11% Similarity=0.061 Sum_probs=114.1
Q ss_pred CCCCChHHHHHHHHHHHHhHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhhCch
Q 004956 82 GRNVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGPFWYASGATIQVLLFGVMAIEIKRKASHAHTVCEIVKARWGTA 161 (722)
Q Consensus 82 gRsv~~~l~a~si~at~~sa~t~lg~~g~ay~~Gi~~~~w~~~G~~l~ill~~~la~~lr~~~~~~~Ti~E~l~~Ryg~~ 161 (722)
.|.++...+-+=-.+.-+++.-|+|+...-...|-+..+-|.++..+.++++--++.... ..|+.+|..+|-++-+|+.
T Consensus 12 ~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPSvlLaY~I~G~~~f~iMRaLGEm~~-~~p~~gSF~~~a~~~lG~~ 90 (462)
T COG1113 12 KRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPSVLLAYLIAGIFVFLIMRALGEMLV-ANPVSGSFSDYARKYLGPW 90 (462)
T ss_pred hhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCcHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCCcHHHHHHHHhcch
Confidence 366666666666666778889999999999999999766687775444444444454443 3589999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CChhHHHHHHHhHhhhHHhhccchHHHHHHHHHHHHHHHHHHHHHHH
Q 004956 162 AHLVFLAFCFLTNIIVTAMLLLGGSAVVNALT-GVNIYAASFLIPLGVIVYTLAGGLKATFLASYIHSVIVHVVLVIFVY 240 (722)
Q Consensus 162 ~~~v~~~~~li~~i~~~a~ql~g~a~vl~~l~-Gi~~~~~~il~~~iv~iYT~~GGlrav~~TD~iQ~vi~li~~li~~~ 240 (722)
+.-......-...+.....++.+.+.-++.-+ ++|.|...+...+++..-.. -+.|.---+++--++|++++++.+..
T Consensus 91 Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~vP~Wv~al~~~~l~~~~NL-~sVk~FGE~EfWfAlIKV~aIi~~Iv 169 (462)
T COG1113 91 AGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPDVPQWVFALAAVVLLLAVNL-ISVKVFGELEFWFALIKVAAIIAFIV 169 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777777777777888999999999999988 58777766655554443333 34566666777777777766655544
No 62
>TIGR00930 2a30 K-Cl cotransporter.
Probab=96.97 E-value=1.8 Score=53.96 Aligned_cols=157 Identities=13% Similarity=0.026 Sum_probs=84.6
Q ss_pred cCCCCChHHHHHHH-HHHHHhHHHHHHHHHHHHHhCChHHHH-HHHHHHHHHHHHHHHHHHHHhh-cCCCCCHHHHHHHh
Q 004956 81 AGRNVKTGLIASVI-VSQWTWAATILQSSNVAWEYGVSGPFW-YASGATIQVLLFGVMAIEIKRK-ASHAHTVCEIVKAR 157 (722)
Q Consensus 81 AgRsv~~~l~a~si-~at~~sa~t~lg~~g~ay~~Gi~~~~w-~~~G~~l~ill~~~la~~lr~~-~~~~~Ti~E~l~~R 157 (722)
.+|++|++.-.+.- +.+-.|+.-|+-.+...-+.|+...+. +.++..+. ++.++-...+-.+ .++.--...++++-
T Consensus 74 ~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vt-lltaLS~seiaTng~p~aGG~Y~yisra 152 (953)
T TIGR00930 74 GAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVT-TITGLSMSAIATNGVVKGGGAYYLISRS 152 (953)
T ss_pred CCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 35778776655444 444455555555555555666543221 22222222 2222222233332 45667778889999
Q ss_pred hCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCh----------hHHHHHHHhHhhhHHhhccchHHHHHHHHHH
Q 004956 158 WGTAAHLVFLAFCFLTNIIVTAMLLLGGSAVVNALTGVN----------IYAASFLIPLGVIVYTLAGGLKATFLASYIH 227 (722)
Q Consensus 158 yg~~~~~v~~~~~li~~i~~~a~ql~g~a~vl~~l~Gi~----------~~~~~il~~~iv~iYT~~GGlrav~~TD~iQ 227 (722)
+|+.......+...+.+....++...|.+..+..+++-+ ....+-++.++++....+-|+|-......+=
T Consensus 153 lGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~~~~~~~~~iia~i~l~ll~~In~~Gvk~~ak~q~vl 232 (953)
T TIGR00930 153 LGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKIMVDPINDIRIYGTVTVVVLLGISFAGMEWENKAQVLF 232 (953)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCccccchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 998876666666666777777888888877777765311 0111112233333445566777666655555
Q ss_pred HHHHHHHHHHH
Q 004956 228 SVIVHVVLVIF 238 (722)
Q Consensus 228 ~vi~li~~li~ 238 (722)
+++++++++.+
T Consensus 233 ~vi~ll~ll~~ 243 (953)
T TIGR00930 233 LVIVLLSILNI 243 (953)
T ss_pred HHHHHHHHHHH
Confidence 55544444333
No 63
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=96.95 E-value=1.3 Score=51.98 Aligned_cols=157 Identities=16% Similarity=0.080 Sum_probs=88.9
Q ss_pred CCCCChHHHHHHHHHHHHhHHHHHHHHHHHHH-hCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhhCc
Q 004956 82 GRNVKTGLIASVIVSQWTWAATILQSSNVAWE-YGVSGPFWYASGATIQVLLFGVMAIEIKRKASHAHTVCEIVKARWGT 160 (722)
Q Consensus 82 gRsv~~~l~a~si~at~~sa~t~lg~~g~ay~-~Gi~~~~w~~~G~~l~ill~~~la~~lr~~~~~~~Ti~E~l~~Ryg~ 160 (722)
.|+++.+-...-.+++-.++.-+.-....+.+ .|-+..+.+.++.. ..++.++...++-.+.|+.-+...+.++.+|+
T Consensus 27 ~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~~~ls~liagv-~~l~~al~yaElas~~P~sGg~Y~y~~~~~G~ 105 (557)
T TIGR00906 27 KRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPAIVLSFLISGL-AAVLSGFCYAEFGARVPKAGSAYLYSYVTVGE 105 (557)
T ss_pred hhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCCCcceeeHHHHhCc
Confidence 58899887777767776777666655444443 56654333444433 22334444455555567778888899999998
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC------------C--h-----hHHHHHHHhHhhhHHhhccchHHHH
Q 004956 161 AAHLVFLAFCFLTNIIVTAMLLLGGSAVVNALTG------------V--N-----IYAASFLIPLGVIVYTLAGGLKATF 221 (722)
Q Consensus 161 ~~~~v~~~~~li~~i~~~a~ql~g~a~vl~~l~G------------i--~-----~~~~~il~~~iv~iYT~~GGlrav~ 221 (722)
....+.....++.++...+....+.+..++.+++ + + ..... +..+++......-|.|...
T Consensus 106 ~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a-~~ii~l~~~ln~~Gik~s~ 184 (557)
T TIGR00906 106 LWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFA-VCLILLLAVLLSFGVKESA 184 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHH-HHHHHHHHHHHHhchhHHH
Confidence 8777776666666665555554444444443321 0 0 11111 1122223345566777777
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004956 222 LASYIHSVIVHVVLVIFVY 240 (722)
Q Consensus 222 ~TD~iQ~vi~li~~li~~~ 240 (722)
....+-+++.++.++++.+
T Consensus 185 ~v~~i~~~iki~~l~~~iv 203 (557)
T TIGR00906 185 WVNKIFTAINILVLLFVII 203 (557)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 7666666665555444333
No 64
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=96.90 E-value=1.2 Score=50.56 Aligned_cols=85 Identities=8% Similarity=0.012 Sum_probs=51.3
Q ss_pred CCCCChHHHHHHHHHHHHhHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhhCch
Q 004956 82 GRNVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGPFWYASGATIQVLLFGVMAIEIKRKASHAHTVCEIVKARWGTA 161 (722)
Q Consensus 82 gRsv~~~l~a~si~at~~sa~t~lg~~g~ay~~Gi~~~~w~~~G~~l~ill~~~la~~lr~~~~~~~Ti~E~l~~Ryg~~ 161 (722)
.|+++.+-...-.+++-+++.-+.-... ..+.|-...+.+.++ .++.++.++...++-.+.|+.-...++.++ +|+.
T Consensus 4 ~~~lg~~~~~~l~vg~~IGsGif~lp~~-~a~~G~~~i~~wli~-~~~~l~~al~~aEL~s~~P~~GG~y~y~~~-~g~~ 80 (435)
T PRK10435 4 AKKIGLFACTGVVAGNMMGSGIALLPAN-LASIGSIAIWGWIIS-IIGAMSLAYVYARLATKNPQQGGPIAYAGE-ISPA 80 (435)
T ss_pred CCcCCHHHHHHHHHhhHHHHHHHHHHHH-HHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHhhCCCCCChhHHHHH-HCcH
Confidence 5778887777777777777777754443 445564432212222 233334444445555556888888999987 8887
Q ss_pred hhHHHHHH
Q 004956 162 AHLVFLAF 169 (722)
Q Consensus 162 ~~~v~~~~ 169 (722)
........
T Consensus 81 ~gf~~gw~ 88 (435)
T PRK10435 81 FGFQTGVL 88 (435)
T ss_pred HHHHHHHH
Confidence 65554443
No 65
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=96.89 E-value=1.2 Score=50.67 Aligned_cols=348 Identities=14% Similarity=0.080 Sum_probs=180.8
Q ss_pred CCCHHHHHHHhhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC----C-------------h-hHHHHHHHhHhh
Q 004956 147 AHTVCEIVKARWGTAAHLVFLAFCFLTNIIVTAMLLLGGSAVVNALTG----V-------------N-IYAASFLIPLGV 208 (722)
Q Consensus 147 ~~Ti~E~l~~Ryg~~~~~v~~~~~li~~i~~~a~ql~g~a~vl~~l~G----i-------------~-~~~~~il~~~iv 208 (722)
....|...|.-||-.....-.+.=.+..+.+-+.|-+.++..++.+++ - + ....++++--++
T Consensus 102 gIpFpv~~RaSFGi~Ga~~p~l~R~i~A~~WyGvqty~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~ifW~l 181 (497)
T COG1953 102 GIPFPVLSRASFGIYGANFPALIRAIVAIVWYGVQTYAGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICFFIFWVL 181 (497)
T ss_pred CCCchHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccccccCCccccccCCcHHHHHHHHHHHHH
Confidence 467899999999966544444444455567788888888888887643 1 1 344566666667
Q ss_pred hHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCChHHHHHHHHHhhhhcccCCCCCCCCCCCCCCCCCCCC
Q 004956 209 IVYTLAGGLKATFLASYIHSVIVHVVLVIFVYLVYTASSELGSPSVMYNRLVEVASKSRICQEPVSHAGQSCGPVNGNYK 288 (722)
Q Consensus 209 ~iYT~~GGlrav~~TD~iQ~vi~li~~li~~~~v~~~~~~~GG~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~P~~~~~~ 288 (722)
-+.....|++.+-.-..+-+.+.++.++.+.+.+. .+.||.+.+.+.- .. .+..++
T Consensus 182 ~~l~~~~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~---~~a~g~~~~~~~p----~~---------------~~~~~~-- 237 (497)
T COG1953 182 QLLVLFKGMESIRKFETWAGPLVYIAMLGLAIWAL---VKAGGSSILGELP----AG---------------TVSGSN-- 237 (497)
T ss_pred HHHHHhcCHHHHHHHHHHhchHHHHHHHHHHHHHH---HhcCCcCccccCC----CC---------------CCCcch--
Confidence 78899999999999999999999888888877654 3456633322210 00 111111
Q ss_pred CcchhhhcchhhHHHHHHHHHhhcccccCcceehhheeeCC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 004956 289 GSFLTILSSGGLVFGIINIVGNFGTVFVDNGYWVSAIAARP-SSTHKGYLLGGLVWFAVPFSLATSLGLGALALDLPLTE 367 (722)
Q Consensus 289 gs~~t~~s~~glifg~~~il~~fg~~~~dq~~~QR~~aAk~-~~a~k~~~l~~~l~~~ip~~~~~~iGl~a~al~~~l~~ 367 (722)
..+. .+-++...++++++..+|+.=+-|.- |+ ++.+++-+++-++-+.+--+..+...-++..++.+..
T Consensus 238 -~~w~------~~~~~~~~v~~~Atl~lN~~DFsRfa--~s~~~~~~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~- 307 (497)
T COG1953 238 -SSWA------FLAGIAAWVGFWATLALNIPDFTRFA--KSQKAQIWGQLVGLPVNFALFSLIGVVVTSASYILYGETI- 307 (497)
T ss_pred -hHHH------HHHHHHHHHHHHHHHhcCCchhhccc--CChhhhhhccchhhhHHHHHHHHHHhhHHHHHHHhhCccc-
Confidence 1111 12233345678888778877677753 44 3445553333222211111112223333444443321
Q ss_pred cccCCCCchHHHHHHhhhhHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhcCCCCCcchhhHhhhH--HHHHHH
Q 004956 368 TEASHGLVPPATAIALMGKGGSILLLTMLFMAVTSAGSSELIAVSSLCTYDIYRTYINPDASGEKILKVSRA--VILGFG 445 (722)
Q Consensus 368 ~~~~~~~v~p~~~~~llp~~l~gl~l~~i~aA~~ST~ss~l~a~Ssi~t~DIy~~~i~p~as~k~ll~vsRi--~vvv~~ 445 (722)
-||.+ .+.+..+..... +.+.+.=+++|++....+-.-.-.+|+-.-+ |+.- ..+|- .+.+++
T Consensus 308 --w~P~d----i~~~~~~~~~~~--fl~~l~~~iati~~Ni~aN~vsp~~D~s~l~--Pk~i-----n~krg~liaA~ia 372 (497)
T COG1953 308 --WDPLD----IVARFLSGFYAA--FLAGLTFAVATISTNIAANIVSPGYDLSALF--PKYI-----NIKRGGLIAAIIA 372 (497)
T ss_pred --CCHHH----HHHHhccchHHH--HHHHHHHHHHHHhhhHHhccCChHHHHHHhc--cccc-----chhhhHHHHHHHH
Confidence 12222 223333333333 3344455556666666666666678886543 4332 22232 222333
Q ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHhhhHHHhhhh-------------hccC-------CCchhhHHHHHHHHHHHH
Q 004956 446 CFMGFLAVILNKAGVSLGWMYLAMGVLIGSAVLPIAFM-------------LLWR-------KANAIGAIAGTITGCLLG 505 (722)
Q Consensus 446 i~~~~~a~~~~~~~i~l~~l~~~~g~~~~~~~~plllg-------------l~Wk-------r~n~~gAi~g~i~G~~~~ 505 (722)
++..-+-++ +..+. ........|.+.+|+...++.= +|-. +.-..-|+++.++|.+.+
T Consensus 373 l~~~PW~l~-~s~s~-f~~~L~~yg~~LgpiaGVmiaDyflirk~~~~v~~ly~~~G~y~y~~G~N~rA~~A~~~G~~~~ 450 (497)
T COG1953 373 LLICPWNLL-ESSSS-FTTFLGSYGVFLGPIAGVMIADYFLVRKGRLNLDELYTEPGEYYYYGGWNWRAFAAYLCGVAPS 450 (497)
T ss_pred HHHcChHHH-cCccH-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCccChHHhcCCCCCeEEecCcCHHHHHHHHHhhhcc
Confidence 333333332 33333 3333344566667766665441 1111 122345677777777655
Q ss_pred HHHHHHhhhhcccccccCCCCCCchhhHHHHHHHHhHhHhhhheecccCCC
Q 004956 506 IITWLSVTAIEYGRINLDTTGRNAPMLAGNLVSILTGGAVHAVCSLLWPQN 556 (722)
Q Consensus 506 i~~w~~~~~~~~G~i~~~~~~~~~~~l~g~~vsl~~s~i~~vivSlltp~~ 556 (722)
+.. +. ....+ . ..-+..+-+++++++.+++.+.-...|.+
T Consensus 451 l~G--v~-~~~~~------~--~~~~~~~wF~G~~ia~~iY~~L~~~~p~~ 490 (497)
T COG1953 451 LPG--VG-KVPPG------L--PPLYYYGWFVGVLLAFLIYWGLCKFFPFK 490 (497)
T ss_pred ccc--hh-cCCcc------c--chhhhhhHHHHHHHHHHHHHHHHhhcCCC
Confidence 432 00 10011 0 11122455667777777777666555543
No 66
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=96.88 E-value=0.98 Score=49.57 Aligned_cols=147 Identities=14% Similarity=0.205 Sum_probs=92.8
Q ss_pred CCChHHHHHHHHHHHHhHHHHHHHHHHHHHh-CChHHHHHHH-HHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhhCch
Q 004956 84 NVKTGLIASVIVSQWTWAATILQSSNVAWEY-GVSGPFWYAS-GATIQVLLFGVMAIEIKRKASHAHTVCEIVKARWGTA 161 (722)
Q Consensus 84 sv~~~l~a~si~at~~sa~t~lg~~g~ay~~-Gi~~~~w~~~-G~~l~ill~~~la~~lr~~~~~~~Ti~E~l~~Ryg~~ 161 (722)
+++.+....-++++-.+++ ++..++...+. |-++ |.+. .+.+..++..++..++-+|.|+ .+..|+.++.+|+.
T Consensus 2 ~is~~q~~~l~~~~~iG~g-il~~P~~~~~~a~~~~--wi~~ll~~~~~~~~~~~~~~l~~~~p~-~~~~~~~~~~~Gk~ 77 (359)
T TIGR00912 2 KISSKQLIFLISSTMIGSG-LLTLPALVSQSAGQDG--WISIILGGLIIIFLLCLMIKIMSKFPE-KNFSEILSKYLGKI 77 (359)
T ss_pred cCcHHHHHHHHHHHHHHHH-HHhhhHHHHhccCCCe--eHHHHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHhhHH
Confidence 4555666666666666655 66667665554 4443 4332 2222222333444555555565 58999999999998
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CChhHHHHHHHhHhhhHHhhccchHHHHHHHHHHHHHHHHH
Q 004956 162 AHLVFLAFCFLTNIIVTAMLLLGGSAVVNALT-GVNIYAASFLIPLGVIVYTLAGGLKATFLASYIHSVIVHVV 234 (722)
Q Consensus 162 ~~~v~~~~~li~~i~~~a~ql~g~a~vl~~l~-Gi~~~~~~il~~~iv~iYT~~GGlrav~~TD~iQ~vi~li~ 234 (722)
...+..+..++......+......+..++... +-.+.....+..+++..|...+|.+....+..+-..++++.
T Consensus 78 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tp~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~~i~~ 151 (359)
T TIGR00912 78 LGRLLSILFILYFFLIAAYLIRIFADFIKTYLLPRTPIIVIIILIIIVSIYIVRKGIEVLLRTAEILLIIFLIL 151 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHH
Confidence 87776666665555556666666677666532 22233334455666778999999999999888887776655
No 67
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=96.80 E-value=1.3 Score=49.91 Aligned_cols=95 Identities=11% Similarity=0.101 Sum_probs=64.2
Q ss_pred HHHHhhcCCC-CCHHHHHHHhhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-------ChhHHHHHHHhHhhh
Q 004956 138 IEIKRKASHA-HTVCEIVKARWGTAAHLVFLAFCFLTNIIVTAMLLLGGSAVVNALTG-------VNIYAASFLIPLGVI 209 (722)
Q Consensus 138 ~~lr~~~~~~-~Ti~E~l~~Ryg~~~~~v~~~~~li~~i~~~a~ql~g~a~vl~~l~G-------i~~~~~~il~~~iv~ 209 (722)
.+...+.++. .+..|..++-+|++.+.+..+...+.....+.+-..+++..++...+ .+.....+++..++.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~~~r~~~~lif~~~~~ 140 (415)
T COG0814 61 LEALLSSPNGKASITSLVEDYLGKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNPLPRKLGSLIFALVLA 140 (415)
T ss_pred HHHHHhCCCCcccHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCCcchHHHHHHHHHHHH
Confidence 3444444555 49999999999999999888777777777777777888888887655 466677777666666
Q ss_pred HHhhccchHHHHHHHHHHHHHHHH
Q 004956 210 VYTLAGGLKATFLASYIHSVIVHV 233 (722)
Q Consensus 210 iYT~~GGlrav~~TD~iQ~vi~li 233 (722)
. ...-|-+++..-..+-...+++
T Consensus 141 ~-l~~~~~~~~lk~ts~l~~~~v~ 163 (415)
T COG0814 141 F-LSWLGTLAVLKITSLLVFGKVI 163 (415)
T ss_pred H-HHHhchhHHHHHHHHHHHHHHH
Confidence 6 5555555554444333333333
No 68
>PRK10580 proY putative proline-specific permease; Provisional
Probab=96.65 E-value=1.8 Score=49.31 Aligned_cols=155 Identities=13% Similarity=0.013 Sum_probs=93.5
Q ss_pred CCCCChHHHHHHHHHHHHhHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhhCch
Q 004956 82 GRNVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGPFWYASGATIQVLLFGVMAIEIKRKASHAHTVCEIVKARWGTA 161 (722)
Q Consensus 82 gRsv~~~l~a~si~at~~sa~t~lg~~g~ay~~Gi~~~~w~~~G~~l~ill~~~la~~lr~~~~~~~Ti~E~l~~Ryg~~ 161 (722)
.|+++.+-...-.+++-++++-+.+........|-+..+-+.++..+. ++.+....++-++.|..-...++.++.+|+.
T Consensus 8 ~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~~~~l~~~i~~i~~-~~~a~~~aEl~s~~P~~Gg~y~y~~~~~G~~ 86 (457)
T PRK10580 8 KRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPSVLLAYIIGGVAA-YIIMRALGEMSVHNPAASSFSRYAQENLGPL 86 (457)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCCCCHHHHHHHHcCcH
Confidence 477888877766677777777777766655566765422233333222 2223333455555688889999999999998
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-ChhHHHHHHHhHhhhHHhhccchHHHHHHHHHHHHHHHHHHHHH
Q 004956 162 AHLVFLAFCFLTNIIVTAMLLLGGSAVVNALTG-VNIYAASFLIPLGVIVYTLAGGLKATFLASYIHSVIVHVVLVIF 238 (722)
Q Consensus 162 ~~~v~~~~~li~~i~~~a~ql~g~a~vl~~l~G-i~~~~~~il~~~iv~iYT~~GGlrav~~TD~iQ~vi~li~~li~ 238 (722)
...+......+......+.+..+.+..++...+ .+.+... +..+++..+.-+-|.|.....+.+-++++++.++++
T Consensus 87 ~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~ln~~gv~~~~~~~~~~~~~~~~~l~~~ 163 (457)
T PRK10580 87 AGYITGWTYCFEILIVAIADVTAFGIYMGVWFPTVPHWIWV-LSVVLIICAVNLMSVKVFGELEFWFSFFKVATIIIM 163 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChHHHH-HHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHH
Confidence 776666655555555555555555655555543 3333322 222333445555677888777777676666655443
No 69
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=96.62 E-value=1.9 Score=49.32 Aligned_cols=104 Identities=16% Similarity=0.157 Sum_probs=55.8
Q ss_pred CCCChHHHH---HHHHHHHHhHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhhC
Q 004956 83 RNVKTGLIA---SVIVSQWTWAATILQSSNVAWEYGVSGPFWYASGATIQVLLFGVMAIEIKRKASHAHTVCEIVKARWG 159 (722)
Q Consensus 83 Rsv~~~l~a---~si~at~~sa~t~lg~~g~ay~~Gi~~~~w~~~G~~l~ill~~~la~~lr~~~~~~~Ti~E~l~~Ryg 159 (722)
|+++.+-.. .+.++.| ..+....+.+.+.|=.+..|-.+-..+..++.+....++-++.|+.-...++.++.+|
T Consensus 13 R~~~~~~~~~~~~~~~~~~---~gi~~~~~~~~~~~Gp~~~~~~li~~i~~l~~als~aEL~s~~P~aGG~Y~~~~~~~g 89 (475)
T TIGR03428 13 RKLGRYASFAAGFSFVSIL---TTIFQLFGFGYGFGGPAFFWTWPVVFVGQLLVALNFAELAARYPISGAIYQWSRRMGG 89 (475)
T ss_pred cchhhHHHHHHHHHHHHHH---HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHcC
Confidence 666655442 2333334 3445555565554422323322222233333444445555566888999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004956 160 TAAHLVFLAFCFLTNIIVTAMLLLGGSAVV 189 (722)
Q Consensus 160 ~~~~~v~~~~~li~~i~~~a~ql~g~a~vl 189 (722)
+....+......+......+....+....+
T Consensus 90 ~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~ 119 (475)
T TIGR03428 90 EVIGWFAGWFMIIAQIVTAAAAAIALQVVL 119 (475)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877666666655555444433333433333
No 70
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=96.61 E-value=1.9 Score=48.99 Aligned_cols=156 Identities=11% Similarity=0.076 Sum_probs=79.9
Q ss_pred cCCCCChHHHHHHHHHHHHhHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhhCc
Q 004956 81 AGRNVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGPFWYASGATIQVLLFGVMAIEIKRKASHAHTVCEIVKARWGT 160 (722)
Q Consensus 81 AgRsv~~~l~a~si~at~~sa~t~lg~~g~ay~~Gi~~~~w~~~G~~l~ill~~~la~~lr~~~~~~~Ti~E~l~~Ryg~ 160 (722)
-.|+++.+-...-.+++.+++.-+......+. .|-...+.+.++. +..+..++...++-.+.|+.-...++.+++||+
T Consensus 6 ~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~-~g~~~~~~~~i~~-~~~l~~al~~aEL~s~~P~aGG~y~~~~~~~g~ 83 (445)
T PRK10644 6 DAHKVGLIPVTLMVAGNIMGSGVFLLPANLAS-TGGIAIYGWLVTI-IGALGLSMVYAKMSSLDPSPGGSYAYARRCFGP 83 (445)
T ss_pred cCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHH-HHHHHHHHHHHHH-HHHHHHHHHHHHHHhhCCCCCChhHHHHHHcCc
Confidence 45778887777777788888777766555443 4432211122222 223334444456655668888999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC--hhHH-HH-HHHhHhhhHHhhccchHHHHHHHHHHHHHHHHHHH
Q 004956 161 AAHLVFLAFCFLTNIIVTAMLLLGGSAVVNALTGV--NIYA-AS-FLIPLGVIVYTLAGGLKATFLASYIHSVIVHVVLV 236 (722)
Q Consensus 161 ~~~~v~~~~~li~~i~~~a~ql~g~a~vl~~l~Gi--~~~~-~~-il~~~iv~iYT~~GGlrav~~TD~iQ~vi~li~~l 236 (722)
....+......+...........+.....+.+.+. +.+. .+ .+..+.+..+.-.-|.|.....+.+=+++.++.++
T Consensus 84 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~gvk~~~~i~~i~~~~~~i~l~ 163 (445)
T PRK10644 84 FLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIV 163 (445)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH
Confidence 87665554444333222222111222233333331 1221 11 11122233344455666666655555555444333
Q ss_pred HH
Q 004956 237 IF 238 (722)
Q Consensus 237 i~ 238 (722)
.+
T Consensus 164 ~~ 165 (445)
T PRK10644 164 GI 165 (445)
T ss_pred HH
Confidence 33
No 71
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=96.57 E-value=2 Score=48.85 Aligned_cols=141 Identities=11% Similarity=0.036 Sum_probs=79.9
Q ss_pred HHHhHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhhCchhhHHHHHHHHHHHHH
Q 004956 97 QWTWAATILQSSNVAWEYGVSGPFWYASGATIQVLLFGVMAIEIKRKASHAHTVCEIVKARWGTAAHLVFLAFCFLTNII 176 (722)
Q Consensus 97 t~~sa~t~lg~~g~ay~~Gi~~~~w~~~G~~l~ill~~~la~~lr~~~~~~~Ti~E~l~~Ryg~~~~~v~~~~~li~~i~ 176 (722)
+-+++.-|++......+.|-+..+-+.++..+. .+.+....++-.+.|..-...++.++.||+....+......+..+.
T Consensus 6 ~~IGsGif~~~g~~~~~aG~~~ll~~~i~gi~~-~~~al~~aEL~s~~P~~Gg~y~y~~~~~G~~~gf~~gw~~~~~~~~ 84 (446)
T PRK10197 6 GVIGASLFVGSSVAIAEAGPAVLLAYLFAGLLV-VMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWWFWVL 84 (446)
T ss_pred chhHhHHHHHhHHHHHhcChHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCCCCHHHHHHHHcChHHHHHHHHHHHHHHHH
Confidence 345556677755555566755322233333222 2233444555555688889999999999998887777777766666
Q ss_pred HHHHHHHHHHHHHHHhhC-ChhHHHHHHHhHhhhHHhhccchHHHHHHHHHHHHHHHHHHHHHH
Q 004956 177 VTAMLLLGGSAVVNALTG-VNIYAASFLIPLGVIVYTLAGGLKATFLASYIHSVIVHVVLVIFV 239 (722)
Q Consensus 177 ~~a~ql~g~a~vl~~l~G-i~~~~~~il~~~iv~iYT~~GGlrav~~TD~iQ~vi~li~~li~~ 239 (722)
....+..+.+..++...+ .+.+... +..+.+....-+-|.|.....+.+-++++++.++.+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~lN~~gv~~~~~i~~~~~~~ki~~li~~i 147 (446)
T PRK10197 85 VIPLEANIAAMILHSWVPGIPIWLFS-LVITLALTGSNLLSVKNYGEFEFWLALCKVIAILAFI 147 (446)
T ss_pred HHHHHHHHHHHHHHhccccCcHHHHH-HHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHH
Confidence 666666555656665443 3333222 2222222233344666666666666665555444443
No 72
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=96.54 E-value=1.6 Score=47.32 Aligned_cols=150 Identities=15% Similarity=0.212 Sum_probs=95.7
Q ss_pred ChHHHHHHHHHHHHhHHHHHHHHHHHHHhCChHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhhCchhh
Q 004956 86 KTGLIASVIVSQWTWAATILQSSNVAWEYGVSGPFWYAS--GATIQVLLFGVMAIEIKRKASHAHTVCEIVKARWGTAAH 163 (722)
Q Consensus 86 ~~~l~a~si~at~~sa~t~lg~~g~ay~~Gi~~~~w~~~--G~~l~ill~~~la~~lr~~~~~~~Ti~E~l~~Ryg~~~~ 163 (722)
+......-+..+..+...+..-...+.+.| .+ |.+. +...+. +..++..++-+| .+..|+.|+.++++||..+
T Consensus 3 S~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~-d~--Wi~~ll~~~~~l-~~~~l~~~l~~~-~p~~~l~~~~~~~~Gk~lg 77 (320)
T PF03845_consen 3 SPRQLFFLLISSIIGTGILFLPAILAEQAG-DA--WISVLLGGLIGL-LLALLIYYLLKR-FPGKTLVEISEKLFGKWLG 77 (320)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-Cc--HHHHHHHHHHHH-HHHHHHHHHHHH-CCCCCHHHHHHHHhCcHHH
Confidence 334444444555555444444444455555 44 5432 222233 333444444444 4579999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCChhHHHHHHHhHhhhHHhhccchHHHHHHHHHHHHHHHHHHHHHHH
Q 004956 164 LVFLAFCFLTNIIVTAMLLLGGSAVVNAL-TGVNIYAASFLIPLGVIVYTLAGGLKATFLASYIHSVIVHVVLVIFVY 240 (722)
Q Consensus 164 ~v~~~~~li~~i~~~a~ql~g~a~vl~~l-~Gi~~~~~~il~~~iv~iYT~~GGlrav~~TD~iQ~vi~li~~li~~~ 240 (722)
.+..+...+..+...+..+...+..++.. .+--+...+.+..++++.|...+|++....+..+-..+.++..+.+..
T Consensus 78 ~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~lp~TP~~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~~~~i~~~~i~~ 155 (320)
T PF03845_consen 78 KIINLLYILYFLLISALVLREFSEFIKTYLLPETPIWVIILLFLLVAAYAARKGIEVIARVAEILFPIFLILLLLILL 155 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777777777788888888888888864 454444555566667889999999999998555555554444444433
No 73
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=96.49 E-value=0.24 Score=56.08 Aligned_cols=150 Identities=20% Similarity=0.157 Sum_probs=77.2
Q ss_pred CCCChHHHHHHHHHHHHhHHHH-HHHHHHHHHhCChHHHHHHH-----HHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHH
Q 004956 83 RNVKTGLIASVIVSQWTWAATI-LQSSNVAWEYGVSGPFWYAS-----GATIQVLLFGVMAIEIKRKASHAHTVCEIVKA 156 (722)
Q Consensus 83 Rsv~~~l~a~si~at~~sa~t~-lg~~g~ay~~Gi~~~~w~~~-----G~~l~ill~~~la~~lr~~~~~~~Ti~E~l~~ 156 (722)
|+-+++-...--++...+..++ +|... ..+|++ +|.++ |..++.++..+.+..=.| .-.+....-|.
T Consensus 7 R~~~~~~~~~iW~~~~~~~~~~~~G~~~--~~~gL~--~~~ailai~~G~~l~~i~~~~~~~~G~r---~Gl~~~v~sR~ 79 (440)
T PF02133_consen 7 RTWSPWSLFWIWFGANISIATFVTGALG--VALGLS--FWQAILAILIGNLLGAILVALMGIIGPR---TGLPTMVLSRA 79 (440)
T ss_dssp --B-HHHHHHHHCHHH-SCHHH-HHHHH--HCCCS---HHHHHHHHHHHHHHHHHHHHHHTHHHHC---C---HHHHTTT
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHH--HccCch--HHHHHHHHHHHHHHHHHHHHHhcccccc---cCCCchhcchh
Confidence 3444444444434444444444 33333 456776 34332 333333333333332222 23445555566
Q ss_pred hhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCh----------------hHHHHHHHhHhhhHHhhccchHHH
Q 004956 157 RWGTAAHLVFLAFCFLTNIIVTAMLLLGGSAVVNALTGVN----------------IYAASFLIPLGVIVYTLAGGLKAT 220 (722)
Q Consensus 157 Ryg~~~~~v~~~~~li~~i~~~a~ql~g~a~vl~~l~Gi~----------------~~~~~il~~~iv~iYT~~GGlrav 220 (722)
-||.+...+.+++..+..+.+.+.|..-++..++.+++.. ....++++..++..++...|++..
T Consensus 80 ~FG~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~l 159 (440)
T PF02133_consen 80 SFGYRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGSFLWIGNAIIGIALPLWVCFFIFWLIQTLFAIYGMKAL 159 (440)
T ss_dssp TS-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HH-----------HHHHHHHHHHHHHHCTHHHHH
T ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhhhhhcchhhHHHHHHHHHHHHHHHHhcCHHHH
Confidence 6688888888888888889999999888888888776422 111222233344556677788877
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004956 221 FLASYIHSVIVHVVLVIFV 239 (722)
Q Consensus 221 ~~TD~iQ~vi~li~~li~~ 239 (722)
..-..+-..++.+..+...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~ 178 (440)
T PF02133_consen 160 RRLAVIAAPILLVVFIGML 178 (440)
T ss_dssp HHHHHCCHHHHHHHHHHHH
T ss_pred HhHHhhhhHHHHhhhhhee
Confidence 7666655555444433333
No 74
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=96.42 E-value=1.7 Score=49.88 Aligned_cols=84 Identities=19% Similarity=0.262 Sum_probs=49.0
Q ss_pred CCCHHHHHHHhhCchh-----h------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCh--hHHHHHHHhHhhhHHh-
Q 004956 147 AHTVCEIVKARWGTAA-----H------LVFLAFCFLTNIIVTAMLLLGGSAVVNALTGVN--IYAASFLIPLGVIVYT- 212 (722)
Q Consensus 147 ~~Ti~E~l~~Ryg~~~-----~------~v~~~~~li~~i~~~a~ql~g~a~vl~~l~Gi~--~~~~~il~~~iv~iYT- 212 (722)
-.++..-++-+.|++. | ++..++.+.+.+...+.|+-+ -++.++|++ .+.-..++++++++++
T Consensus 169 pl~lss~l~Pllg~~~~G~~G~~IDi~aiiaTl~GiATsLG~ga~qi~~---Gl~~l~gip~~~~~q~~iI~vi~~~~~~ 245 (537)
T COG1292 169 PLLLSSALYPLLGERIKGPIGHAVDILAIIATLFGIATSLGLGALQLTA---GLSYLFGIPNSFAVQAIIIAVITALFTI 245 (537)
T ss_pred CchhhhhhhhhhcccccCccchhhHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHhCCCChHHHHHHHHHHHHHHHHH
Confidence 4556666666666442 2 234555566666667777744 477888876 3344444455554443
Q ss_pred -hccch-HHHHHHHHHHHHHHHH
Q 004956 213 -LAGGL-KATFLASYIHSVIVHV 233 (722)
Q Consensus 213 -~~GGl-rav~~TD~iQ~vi~li 233 (722)
..-|+ |++-+..-+...+..+
T Consensus 246 S~~sGv~KGIr~LS~~n~~la~~ 268 (537)
T COG1292 246 SVWSGLDKGIRVLSNINMVLAFL 268 (537)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHH
Confidence 34455 8888777666655443
No 75
>PRK09664 tryptophan permease TnaB; Provisional
Probab=96.39 E-value=2.4 Score=47.73 Aligned_cols=126 Identities=13% Similarity=0.006 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhhCchhhHHHHHHHHHHHHHHHHHH
Q 004956 102 ATILQSSNVAWEYGVSGPFWYASGATIQVLLFGVMAIEIKRKASHAHTVCEIVKARWGTAAHLVFLAFCFLTNIIVTAML 181 (722)
Q Consensus 102 ~t~lg~~g~ay~~Gi~~~~w~~~G~~l~ill~~~la~~lr~~~~~~~Ti~E~l~~Ryg~~~~~v~~~~~li~~i~~~a~q 181 (722)
+..++.|-.....|+....-..+...+.+..-+++.-+...+.++..++..+-|+-.|++.+.+..+..++..-..+.+-
T Consensus 25 AGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~g~~l~tma~~~LG~~g~~i~~~~~~fl~Y~Ll~AY 104 (415)
T PRK09664 25 GGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPVGSSFNTITKDLIGNTWNIISGITVAFVLYILTYAY 104 (415)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHH
Confidence 34556665555555432111112222222223444445555556778888888888899888776665544444446667
Q ss_pred HHHHHHHHHHhh------CChhHHHHHHHhHhhhHHhhccchHHHHHHHHHHHHHH
Q 004956 182 LLGGSAVVNALT------GVNIYAASFLIPLGVIVYTLAGGLKATFLASYIHSVIV 231 (722)
Q Consensus 182 l~g~a~vl~~l~------Gi~~~~~~il~~~iv~iYT~~GGlrav~~TD~iQ~vi~ 231 (722)
+.+++.+++..+ ++|...+.+++.++.......| .|+ .|.+..+++
T Consensus 105 isggG~il~~~l~~~~~~~i~~~~~~llF~~~~~~~v~~g-t~~---vd~~nr~l~ 156 (415)
T PRK09664 105 ISANGAIISETISMNLGYHANPRIVGICTAIFVASVLWIS-SLA---ASRITSLFL 156 (415)
T ss_pred HhccHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHHHHhc-hhH---HHHHHHHHH
Confidence 778888888776 3566666666666665555554 344 455555554
No 76
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=96.19 E-value=3.2 Score=47.09 Aligned_cols=148 Identities=12% Similarity=0.060 Sum_probs=70.4
Q ss_pred CCCCChHHHHHHHHHHHHhHHHHHHHHHHHHHhCChHHHH--HHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhhC
Q 004956 82 GRNVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGPFW--YASGATIQVLLFGVMAIEIKRKASHAHTVCEIVKARWG 159 (722)
Q Consensus 82 gRsv~~~l~a~si~at~~sa~t~lg~~g~ay~~Gi~~~~w--~~~G~~l~ill~~~la~~lr~~~~~~~Ti~E~l~~Ryg 159 (722)
.|+++.+-...-.+++-.++.-+......+-..|-.+..+ +.++.. ..+..++...++-++.|+.-....+.++.||
T Consensus 7 ~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v-~~l~~al~~aEl~s~~P~~GG~y~y~~~~~g 85 (445)
T PRK11357 7 QRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGL-IVIPQMCVYAELSTAYPENGADYVYLKNAGS 85 (445)
T ss_pred cccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHH-HHHHHHHHHHHHHhhcCCCCCceeeHHHhcC
Confidence 5777776655554555555554443333233345432122 222222 2223334444554555777788889999999
Q ss_pred chhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHhHhhhHHhhccchHHHHHHHHHHHHHH
Q 004956 160 TAAHLVFLAFCFL-TNIIVTAMLLLGGSAVVNALTGVNIYAASFLIPLGVIVYTLAGGLKATFLASYIHSVIV 231 (722)
Q Consensus 160 ~~~~~v~~~~~li-~~i~~~a~ql~g~a~vl~~l~Gi~~~~~~il~~~iv~iYT~~GGlrav~~TD~iQ~vi~ 231 (722)
+....+....... ......+.+..+.+.-++..++.+......+..++..+.+.+ ..|++-....+|.++.
T Consensus 86 ~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l-n~~gv~~~~~v~~~~~ 157 (445)
T PRK11357 86 RPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTPIDPLLGKFIAAGLIIAFMLL-HLRSVEGGAAFQTLIT 157 (445)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHH
Confidence 8766555554332 223333444444444455556654433222222222222222 3344444444444443
No 77
>PRK10836 lysine transporter; Provisional
Probab=96.02 E-value=4.1 Score=46.90 Aligned_cols=166 Identities=13% Similarity=0.055 Sum_probs=92.5
Q ss_pred CCCChhhHHhcCCCCChHHHHHHHHHHHHhHHHHHHHHHHHHHhCChHHHH-HHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 004956 71 SRHTSEWFNTAGRNVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGPFW-YASGATIQVLLFGVMAIEIKRKASHAHT 149 (722)
Q Consensus 71 ~~~ssedF~~AgRsv~~~l~a~si~at~~sa~t~lg~~g~ay~~Gi~~~~w-~~~G~~l~ill~~~la~~lr~~~~~~~T 149 (722)
+.+++||.- =.|+++.+-..+-.+++-+++.-|++......+.|-.+..+ +.++..+. ++.+....++-.+.|+.-.
T Consensus 4 ~~~~~~~~~-l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~-~~~al~~aEL~s~~P~sGg 81 (489)
T PRK10836 4 ETKTTEAPG-LRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMV-YFLMTSLGELAAYMPVSGS 81 (489)
T ss_pred ccccCCccc-ccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCCCC
Confidence 345555532 34889998888877888888888888877777778653232 33332222 2223333444455688888
Q ss_pred HHHHHHHhhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-ChhHHHHHHHhHhhhHHhhccchHHHHHHHHHHH
Q 004956 150 VCEIVKARWGTAAHLVFLAFCFLTNIIVTAMLLLGGSAVVNALTG-VNIYAASFLIPLGVIVYTLAGGLKATFLASYIHS 228 (722)
Q Consensus 150 i~E~l~~Ryg~~~~~v~~~~~li~~i~~~a~ql~g~a~vl~~l~G-i~~~~~~il~~~iv~iYT~~GGlrav~~TD~iQ~ 228 (722)
..++.++-+|+....+......+......+.+..+....++...+ .+.+. ..++.+.+....-+-|.|.....+.+.+
T Consensus 82 ~y~y~~~~~g~~~gf~~Gw~~~~~~~~~~a~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~lN~~gv~~~~~~~~~~~ 160 (489)
T PRK10836 82 FATYGQNYVEEGFGFALGWNYWYNWAVTIAVDLVAAQLVMSWWFPDTPGWI-WSALFLGVIFLLNYISVRGFGEAEYWFS 160 (489)
T ss_pred HHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHH-HHHHHHHHHHHHHHHcchhhhhhHHHHH
Confidence 888877777776655444443444443444444444444554432 23221 1222222333444456676666666666
Q ss_pred HHHHHHHHHHH
Q 004956 229 VIVHVVLVIFV 239 (722)
Q Consensus 229 vi~li~~li~~ 239 (722)
++.++.++.+.
T Consensus 161 ~~ki~~~~~~i 171 (489)
T PRK10836 161 LIKVTTVIVFI 171 (489)
T ss_pred HHHHHHHHHHH
Confidence 66665544433
No 78
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=95.50 E-value=6.6 Score=45.49 Aligned_cols=65 Identities=11% Similarity=0.112 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCHHHHHHHhhCchhhHHHHH
Q 004956 103 TILQSSNVAWEYGVSGPFWYASGATIQVLLFGVMAIEIKRKAS-HAHTVCEIVKARWGTAAHLVFLA 168 (722)
Q Consensus 103 t~lg~~g~ay~~Gi~~~~w~~~G~~l~ill~~~la~~lr~~~~-~~~Ti~E~l~~Ryg~~~~~v~~~ 168 (722)
++.+.+. .+++|.+..+|+.++..+-++..++...++-...| +.-...++.++-+|++...+...
T Consensus 21 ~~~~~~~-~a~~G~~~i~~~i~~~l~~~lp~al~~AELas~~p~~~GG~y~wv~~a~G~~~Gf~~~~ 86 (507)
T TIGR00910 21 AVYEYPT-FATSGFHLVFFLLLGGILWFIPVALCAAEMATVDGWEEGGIFAWVSNTLGERFGFAAIF 86 (507)
T ss_pred HHHhhHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeeeehhhccCccHHHHHHH
Confidence 4455553 45788887667766643322223444555544333 55678889999999887655433
No 79
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=95.45 E-value=0.58 Score=51.26 Aligned_cols=140 Identities=16% Similarity=0.281 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcC---CC-------CChhhHHhcCCCCChHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 004956 44 YSVILGFGAFFAVFTSFLVWLEKRYVG---SR-------HTSEWFNTAGRNVKTGLIASVIVSQWTWAATILQSSNVAWE 113 (722)
Q Consensus 44 y~vvi~~~~yfal~~~~~~~~~~r~~~---~~-------~ssedF~~AgRsv~~~l~a~si~at~~sa~t~lg~~g~ay~ 113 (722)
+.+++++.+|+......+-|+.||..+ ++ +|=.||.=. +.+.+..--+++-.++.-++|-. .+..
T Consensus 5 ~~~~~~~~~l~~~Y~~Yg~~l~~~~~~~d~~~~TPA~~~~DGvDYvP~----~~~vlfghhf~sIAGaGPI~GPi-~aa~ 79 (376)
T PF02554_consen 5 WLFLISLAILIIAYRFYGKFLEKKFGKLDDSRPTPAHTMNDGVDYVPT----NKWVLFGHHFASIAGAGPIVGPI-LAAQ 79 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheeccCCCCCCCCeeECCCCCCCCCC----chHHhhHHHHHHHhccccchHHH-HHHH
Confidence 456777778887777888888887652 11 233455443 44555555566666666777654 5588
Q ss_pred hCCh-HHHHHHHHHHHHHHH--HHHHHHHHHhhcCCCCCHHHHHHHhhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004956 114 YGVS-GPFWYASGATIQVLL--FGVMAIEIKRKASHAHTVCEIVKARWGTAAHLVFLAFCFLTNIIVTAMLLLGGSAVVN 190 (722)
Q Consensus 114 ~Gi~-~~~w~~~G~~l~ill--~~~la~~lr~~~~~~~Ti~E~l~~Ryg~~~~~v~~~~~li~~i~~~a~ql~g~a~vl~ 190 (722)
+|.. +..|..+|..+.=-. +.-+..-+|+ +..|++|+.++--|++++.++.+++++..+++.+.-....+..+.
T Consensus 80 ~GwlPa~lWI~~G~if~GaVHD~~sl~~SvR~---~G~Si~~i~~~~lG~~~~~lf~~f~~~~lilV~avF~~v~a~~~~ 156 (376)
T PF02554_consen 80 FGWLPALLWIVFGCIFAGAVHDYGSLMASVRH---KGKSIGEIAGKYLGKRAKKLFLIFIFFLLILVIAVFADVVANTFV 156 (376)
T ss_pred hcchHHHHHHHHccHHHHHHHHHHHHhhhhcC---CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8987 656888876442222 2333344453 689999999999999999999999998888887776666665554
Q ss_pred H
Q 004956 191 A 191 (722)
Q Consensus 191 ~ 191 (722)
.
T Consensus 157 ~ 157 (376)
T PF02554_consen 157 N 157 (376)
T ss_pred c
Confidence 4
No 80
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=95.25 E-value=0.34 Score=55.48 Aligned_cols=144 Identities=17% Similarity=0.167 Sum_probs=86.3
Q ss_pred HHHhHHHHHHHHHHHHHhCChH-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhhCchhhHHHHHHHHHHHH
Q 004956 97 QWTWAATILQSSNVAWEYGVSG-PFWYASGATIQVLLFGVMAIEIKRKASHAHTVCEIVKARWGTAAHLVFLAFCFLTNI 175 (722)
Q Consensus 97 t~~sa~t~lg~~g~ay~~Gi~~-~~w~~~G~~l~ill~~~la~~lr~~~~~~~Ti~E~l~~Ryg~~~~~v~~~~~li~~i 175 (722)
+-.+...+++......+.|..+ +.-|.++.. ...+...-..++-++.|+.-...++.++=.|++..........+..+
T Consensus 9 ~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i-~~~~~~~~~~ems~~~p~~Gg~y~y~~~~lg~~~Gf~~gw~y~~~~~ 87 (478)
T PF00324_consen 9 GIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGI-IVLLVALSLAEMSRRFPSAGGFYAYASRGLGPALGFAAGWAYWLSYI 87 (478)
T ss_pred HHHHHHHHHHHHHHHHhcccccchhHhHHHHH-HHHhhhhhhhhhhhhhccccchhhhhhhccCCcCCceeeHHHHHHHH
Confidence 3445567777777777777733 222333322 22222222234444557788888888887888776666666677777
Q ss_pred HHHHHHHHHHHHHHHHh---hCCh-hHHH---HHHHhHhhhHHhhccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 004956 176 IVTAMLLLGGSAVVNAL---TGVN-IYAA---SFLIPLGVIVYTLAGGLKATFLASYIHSVIVHVVLVIFVYL 241 (722)
Q Consensus 176 ~~~a~ql~g~a~vl~~l---~Gi~-~~~~---~il~~~iv~iYT~~GGlrav~~TD~iQ~vi~li~~li~~~~ 241 (722)
...+.+..+.+..++.. .+.+ .+.. ...+..+++.....-|.|.....+.+-++++++.++.+...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~gv~~~~~~~~~~~~i~~~~li~~ii~ 160 (478)
T PF00324_consen 88 AAIAAEATAAGSFLQFWGYFPGLPSTWVWGILIAIIFILLITLLNLFGVRVSGKIEFILTIIKLIALIAFIIV 160 (478)
T ss_pred HHHHhhhhhhhhhhccccccccccccccccchhhhhhhhhhhhhhhhhhhccchHHHHHHHHhhhHhhhhhhh
Confidence 77788887888777765 3444 2322 12223333344555578888888887777776666655543
No 81
>PRK15015 carbon starvation protein A; Provisional
Probab=93.77 E-value=1.4 Score=51.52 Aligned_cols=140 Identities=16% Similarity=0.320 Sum_probs=93.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhcC---C-------CCChhhHHhcCCCCChHHHHHHHHHHHHhHHHHHHHHHHH
Q 004956 42 VGYSVILGFGAFFAVFTSFLVWLEKRYVG---S-------RHTSEWFNTAGRNVKTGLIASVIVSQWTWAATILQSSNVA 111 (722)
Q Consensus 42 ~gy~vvi~~~~yfal~~~~~~~~~~r~~~---~-------~~ssedF~~AgRsv~~~l~a~si~at~~sa~t~lg~~g~a 111 (722)
.=|.+++++..|+...-..+-|+.+|..+ + .+|-.||.=.+|.+ +..--+++-.++.-++|-.-.+
T Consensus 34 al~lv~aa~~~y~iaYrfYgr~ia~kv~~lD~~r~TPA~~~~DG~DYvPt~k~V----LfGHHFasIAGAGPivGPvlAa 109 (701)
T PRK15015 34 ALWIVVASVCIYLIAYRFYGLYIAKNVLAVDPTRMTPAVRHNDGLDYVPTDKKV----LFGHHFAAIAGAGPLVGPVLAA 109 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCceECCCCCCcCcCCccc----hhHHHHHHHhccCccHHHHHHH
Confidence 34788888888888877777777766532 1 22445665555554 4444566666777777765544
Q ss_pred HHhCCh-HHHHHHHHHHHHHHH--HHHHHHHHHhhcCCCCCHHHHHHHhhCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004956 112 WEYGVS-GPFWYASGATIQVLL--FGVMAIEIKRKASHAHTVCEIVKARWGTAAHLVFLAFCFLTNIIVTAMLLLGGSAV 188 (722)
Q Consensus 112 y~~Gi~-~~~w~~~G~~l~ill--~~~la~~lr~~~~~~~Ti~E~l~~Ryg~~~~~v~~~~~li~~i~~~a~ql~g~a~v 188 (722)
++|+- +..|.-+|..+.=-. +..+..-+|| +..|+.|+.++--|++++.++.++.++.+++..+..-...+..
T Consensus 110 -~~GwlP~~LWIl~G~vf~GaVhD~~~L~~S~R~---~GrSig~ia~~~iG~~~~~lfli~i~~iliiviAvfalvvv~a 185 (701)
T PRK15015 110 -QMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTRR---DGRSLGELVKEEMGPTAGVIALVACFMIMVIILAVLAMIVVKA 185 (701)
T ss_pred -HHcchHHHHHHHHcceeechhhhhhheeeeecC---CCccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78876 556887775432111 2333344454 6899999999999999999999888888877776654444443
Q ss_pred H
Q 004956 189 V 189 (722)
Q Consensus 189 l 189 (722)
+
T Consensus 186 l 186 (701)
T PRK15015 186 L 186 (701)
T ss_pred H
Confidence 3
No 82
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=92.57 E-value=24 Score=40.69 Aligned_cols=157 Identities=11% Similarity=0.052 Sum_probs=74.3
Q ss_pred CCCCChHHHHHHHHHHHHhHHHHHHHHHHHHH-hCChHH-HH-HHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhh
Q 004956 82 GRNVKTGLIASVIVSQWTWAATILQSSNVAWE-YGVSGP-FW-YASGATIQVLLFGVMAIEIKRKASHAHTVCEIVKARW 158 (722)
Q Consensus 82 gRsv~~~l~a~si~at~~sa~t~lg~~g~ay~-~Gi~~~-~w-~~~G~~l~ill~~~la~~lr~~~~~~~Ti~E~l~~Ry 158 (722)
.|+++.+-...-.+++-+++.-+ ..++...+ -|-.+. ++ +.++.. ..+..++...++-.+.|+.-...++.++.|
T Consensus 41 ~r~l~~~~~~~l~vg~iiGsGif-~~~~~~~~~~G~~g~~~~~~ii~~i-~~~~~al~~aELas~~P~sGG~y~~~~~~~ 118 (501)
T TIGR00911 41 KKEITLLSGVGIIVGTIIGSGIF-VSPKGVLKNAGSVGLALIMWAVCGI-FSIVGALVYAELGTTIPKSGGEYNYILEVF 118 (501)
T ss_pred CccccHhHhhHhheeceEEeeEe-ecHHHHHhhCCChHHHHHHHHHHHH-HHHHHHHHHHHHHhhcCCCCchhhhHHhHh
Confidence 46677765555445544444322 23333333 354331 11 122222 222233334455445577778999999999
Q ss_pred CchhhHHHHHHHHHH-HHHHHHHHHHHHHH-HHHHhhC---ChhHH--HHHHHhHhhhHHhhccchHHHHHHHHHHHHHH
Q 004956 159 GTAAHLVFLAFCFLT-NIIVTAMLLLGGSA-VVNALTG---VNIYA--ASFLIPLGVIVYTLAGGLKATFLASYIHSVIV 231 (722)
Q Consensus 159 g~~~~~v~~~~~li~-~i~~~a~ql~g~a~-vl~~l~G---i~~~~--~~il~~~iv~iYT~~GGlrav~~TD~iQ~vi~ 231 (722)
|+....+......+. .....+..-.+.+. .++.+.+ .+.+. .+.+..+.+..+.-..|.|.....+.+-+++.
T Consensus 119 g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~i~~~~i~~~~~ln~~Gvk~~~~~~~i~~~~~ 198 (501)
T TIGR00911 119 GPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCEVPEWAIRLVAVLCVLLLTLVNCLSVKWATRVQDIFTACK 198 (501)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 998766554443321 11112221122222 2232221 22221 12222233344455667787777777767666
Q ss_pred HHHHHHHHH
Q 004956 232 HVVLVIFVY 240 (722)
Q Consensus 232 li~~li~~~ 240 (722)
++.++++.+
T Consensus 199 l~~l~~~ii 207 (501)
T TIGR00911 199 LLALLLIII 207 (501)
T ss_pred HHHHHHHHH
Confidence 665554443
No 83
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=92.18 E-value=2.5 Score=49.43 Aligned_cols=110 Identities=13% Similarity=0.025 Sum_probs=63.4
Q ss_pred CCCChHHHHHHHHHHHHhHHHHHHHHHHHHHhCChHHH-HHHHHHHHHHHHHHHHHHHHHhhcCCC-CCHHHHHHHhhCc
Q 004956 83 RNVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGPF-WYASGATIQVLLFGVMAIEIKRKASHA-HTVCEIVKARWGT 160 (722)
Q Consensus 83 Rsv~~~l~a~si~at~~sa~t~lg~~g~ay~~Gi~~~~-w~~~G~~l~ill~~~la~~lr~~~~~~-~Ti~E~l~~Ryg~ 160 (722)
|.+++.-+.+--+++-+++.-++++....++.|-.+.. -|.+.. +.+++...-..++--+.|.. -+..-+-.+-.|.
T Consensus 30 R~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g-~~~~~~~~~~~E~~~~~P~~aGs~~~ya~~~i~e 108 (554)
T KOG1286|consen 30 RCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAG-IAALLSALCLGEFAVRFPVSAGSFYTYAYRFVGE 108 (554)
T ss_pred ccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHH-HHHHHHHHHHHHHheecccccccceeeeeeeeCc
Confidence 44555544444455566667788888888888876532 133222 12222112122322233442 2233333333455
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004956 161 AAHLVFLAFCFLTNIIVTAMLLLGGSAVVNALT 193 (722)
Q Consensus 161 ~~~~v~~~~~li~~i~~~a~ql~g~a~vl~~l~ 193 (722)
........-.++..+...+.+..+.+..++..+
T Consensus 109 ~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~ 141 (554)
T KOG1286|consen 109 SLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWT 141 (554)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 556666667777888889999999999999986
No 84
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=91.96 E-value=26 Score=39.80 Aligned_cols=143 Identities=12% Similarity=0.030 Sum_probs=72.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhCChHHHHHHHHH-HHHHHHHHHHHHHHHh---hc-CCCCCHHHHHHHhhCchhhHHH
Q 004956 92 SVIVSQWTWAATILQSSNVAWEYGVSGPFWYASGA-TIQVLLFGVMAIEIKR---KA-SHAHTVCEIVKARWGTAAHLVF 166 (722)
Q Consensus 92 ~si~at~~sa~t~lg~~g~ay~~Gi~~~~w~~~G~-~l~ill~~~la~~lr~---~~-~~~~Ti~E~l~~Ryg~~~~~v~ 166 (722)
.++++|-+||+. +..|-.+ |..| +|..+-. .+..+++.+-++.+-| +. ++..++.|..++-+|++.+.+.
T Consensus 26 l~l~GTAIGAGm-LfLPI~~---g~~G-f~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i~ 100 (443)
T PRK13629 26 LGLFGTAIGAGV-LFFPIRA---GFGG-LIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVI 100 (443)
T ss_pred HHHHHHHHhHHH-HHHHHHH---hcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHHH
Confidence 556666666554 3445443 3334 3433222 2222222222222222 22 5678999999999999988776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh----hCC---hhHHHHHHHhHhhhHHhhccchHHHHHHHHHHHHHHHHHHHHHH
Q 004956 167 LAFCFLTNIIVTAMLLLGGSAVVNAL----TGV---NIYAASFLIPLGVIVYTLAGGLKATFLASYIHSVIVHVVLVIFV 239 (722)
Q Consensus 167 ~~~~li~~i~~~a~ql~g~a~vl~~l----~Gi---~~~~~~il~~~iv~iYT~~GGlrav~~TD~iQ~vi~li~~li~~ 239 (722)
.+..++...+.+.+-..+....++.. .|+ |.+...+++.++.. ..+.-|-|.+....-+-...+++.++.+.
T Consensus 101 ~ilYff~ly~ll~aY~~~itn~l~sfl~~ql~~~~~~r~l~slifv~~l~-~iv~~G~~~v~kv~~~Lv~~~i~~l~~l~ 179 (443)
T PRK13629 101 TFLYFFAICPLLWIYGVTITNTFMTFWENQLGFAPLNRGFVALFLLLLMA-FVIWFGKDLMVKVMSYLVWPFIASLVLIS 179 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCccHHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555554444433334444455443 343 55555555444443 34444456665555544444444444433
Q ss_pred H
Q 004956 240 Y 240 (722)
Q Consensus 240 ~ 240 (722)
.
T Consensus 180 ~ 180 (443)
T PRK13629 180 L 180 (443)
T ss_pred H
Confidence 3
No 85
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=91.64 E-value=27 Score=39.19 Aligned_cols=309 Identities=19% Similarity=0.262 Sum_probs=156.1
Q ss_pred ChHHHHHHHHHHHHhHHHHHHHHHHHHHhCChHHHHHHH-HHHH---HHHHHHHHHHHHHhhcCCCCCHHHHHHHhhCch
Q 004956 86 KTGLIASVIVSQWTWAATILQSSNVAWEYGVSGPFWYAS-GATI---QVLLFGVMAIEIKRKASHAHTVCEIVKARWGTA 161 (722)
Q Consensus 86 ~~~l~a~si~at~~sa~t~lg~~g~ay~~Gi~~~~w~~~-G~~l---~ill~~~la~~lr~~~~~~~Ti~E~l~~Ryg~~ 161 (722)
..+.+++.++|=..+|.-++=-+-.+++.|-. +|.+. |..+ ++.+..+++.-.. .+ .. |=+.+|=|++
T Consensus 6 ~~~~~GfmLFalFFGAGNlIFPP~LG~~aG~~--~~~A~lGFllTgVglPlLgiIa~a~~---g~--~~-~~l~~~i~~~ 77 (431)
T COG1114 6 DIIALGFMLFALFFGAGNLIFPPMLGLHAGEH--VWPAILGFLLTGVGLPLLGIIAVALY---GG--GV-ESLATRIGPW 77 (431)
T ss_pred hHHHHHHHHHHHHhcCCCccCChhhhhhcCcc--HHHHHHHHHHHHhhHHHHHHHHhhcc---CC--CH-HHHhhhccch
Confidence 34677888899888888888889999999988 46543 4332 3333333332211 11 22 3344555665
Q ss_pred hhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhhCChhHHHHHHHhHhhhHHhhccchHHHHHHHHHHHH---HHHH
Q 004956 162 AHLVFLAFCFLTN-----IIVTAMLLLGGSAVVNALTGVNIYAASFLIPLGVIVYTLAGGLKATFLASYIHSV---IVHV 233 (722)
Q Consensus 162 ~~~v~~~~~li~~-----i~~~a~ql~g~a~vl~~l~Gi~~~~~~il~~~iv~iYT~~GGlrav~~TD~iQ~v---i~li 233 (722)
...++.....+.. ++-++..=+ ...+.-+.+-+.....++..++...-+..--+|-.-..|.+--+ ++++
T Consensus 78 fg~~f~~~iyLsIGPffAiPRt~~vsf--e~~i~p~~~~~~~~~l~ifs~ifF~ia~~~sl~psklid~vGk~LTPilLv 155 (431)
T COG1114 78 FGVLFAIAIYLSIGPFFAIPRTGAVSF--EVGISPLLGDSSLPSLFIFSVIFFAIAYLFSLNPSKLIDRVGKFLTPILLV 155 (431)
T ss_pred HHHHHHHHHHHHhcccccCCcccchhH--HHhhhcccCCCcchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhHHHHH
Confidence 5554444333222 222221111 11122223332233344444444444444456666667765433 3444
Q ss_pred HHHHHHHHHHhhcccCCChHHHHHHHHHhhhhcccCCCCCCCCCCCCCCCCCCCCCcchhhhcchhhHHHHHHHHHhhcc
Q 004956 234 VLVIFVYLVYTASSELGSPSVMYNRLVEVASKSRICQEPVSHAGQSCGPVNGNYKGSFLTILSSGGLVFGIINIVGNFGT 313 (722)
Q Consensus 234 ~~li~~~~v~~~~~~~GG~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~P~~~~~~gs~~t~~s~~glifg~~~il~~fg~ 313 (722)
.+.++.+..+. ...|.+++-.+.-++ +|........|.||-.-.++.|+.+.. .
T Consensus 156 ~l~il~i~~~~--~p~g~~~~a~~~y~~-------------------~pf~~GfleGY~TMDaLAal~FgivIv-~---- 209 (431)
T COG1114 156 LLLILVIAAII--PPAGPISAASGAYQS-------------------QPFSKGFLEGYLTMDALAALAFGIVIV-N---- 209 (431)
T ss_pred HHHHHHHHHHh--CCCCCcccccHHHHh-------------------ChHHHHHhcchHHHHHHHHHHHHHHHH-H----
Confidence 44444443332 233544433222221 232211222588887656666664321 1
Q ss_pred cccCcceehhheeeCC---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCchHHHHHHhhhhHHHH
Q 004956 314 VFVDNGYWVSAIAARP---SSTHKGYLLGGLVWFAVPFSLATSLGLGALALDLPLTETEASHGLVPPATAIALMGKGGSI 390 (722)
Q Consensus 314 ~~~dq~~~QR~~aAk~---~~a~k~~~l~~~l~~~ip~~~~~~iGl~a~al~~~l~~~~~~~~~v~p~~~~~llp~~l~g 390 (722)
..-||-...+. +...+.-+.+++....+-..+ .-+|-...... ++-.|..+++-...++++|+.+..
T Consensus 210 -----alk~~g~~~~~~~~~~~~~aglIa~i~La~iY~~L-~ylGa~s~~~~----~~~~nG~~IL~~~s~~~fG~~G~~ 279 (431)
T COG1114 210 -----ALKSKGVTTKKQIIKYTIKAGLIAAILLALIYLSL-FYLGATSASAA----GLAANGGQILSAYSQHLFGSYGSI 279 (431)
T ss_pred -----HHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhccchHhhc----ccccchHHHHHHHHHHHhchhhHH
Confidence 11133222221 223333333333222111111 12331111111 122356788889999999999999
Q ss_pred HHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhcCCCCCcchhhHhhhHHHHHHHHHHHHHHH
Q 004956 391 LLLTMLFMAVTSAGSSELIAVSSLCTYDIYRTYINPDASGEKILKVSRAVILGFGCFMGFLAV 453 (722)
Q Consensus 391 l~l~~i~aA~~ST~ss~l~a~Ssi~t~DIy~~~i~p~as~k~ll~vsRi~vvv~~i~~~~~a~ 453 (722)
+.-+.++-|++.|.-+...++|.-+.+ +. |+.|- |..+.++.+.+..++.
T Consensus 280 lL~~iv~lACLTTaiGLi~a~aefF~~-----~~-p~~SY-------~~~v~if~i~sflvan 329 (431)
T COG1114 280 LLGLIVFLACLTTAVGLIVACAEFFSK-----LV-PKLSY-------KTWVIIFTLISFLVAN 329 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----hc-ccccH-------HHHHHHHHHHHHHHHH
Confidence 999999999999999988887765544 22 44443 3344566777777774
No 86
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=91.33 E-value=8.6 Score=43.61 Aligned_cols=230 Identities=15% Similarity=0.123 Sum_probs=110.3
Q ss_pred HHHHHHHHHhhcccccCcceehhheeeCChhhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHhcCCCCccccCCCCch
Q 004956 301 VFGIINIVGNFGTVFVDNGYWVSAIAARPSSTHKGYLLGGLVWFAVPFSLATSLGLG----ALALDLPLTETEASHGLVP 376 (722)
Q Consensus 301 ifg~~~il~~fg~~~~dq~~~QR~~aAk~~~a~k~~~l~~~l~~~ip~~~~~~iGl~----a~al~~~l~~~~~~~~~v~ 376 (722)
+.++..-+++|++-.+||.=+.|+-.... +.. ++-++-+.+|+.+..++|.. +..++..- --+|-+++
T Consensus 257 ~~~i~~~~~~fstl~~N~pDFsRF~ksp~-a~~----~~Ql~alp~~~~l~~liGVlv~sa~~~iYG~~---~W~Pldil 328 (572)
T KOG2466|consen 257 VRSIMSCIANFSTLIVNAPDFSRFAKSPN-AIW----WGQLIALPLPFGLTPLIGVLVTSASKIIYGTN---YWSPLDIL 328 (572)
T ss_pred HHHHHHHHhccchhhccCchhHhhcCCCC-ccc----hhhhhhhhhhhhhhhheeeEehhhhhhhhccc---ccCHHHHH
Confidence 34555567788887788877788643322 222 22222233444443445533 33333210 01222222
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhcCCCCCcchhhHhhhHHHHHHHHHHHHHHH--H
Q 004956 377 PATAIALMGKGGSILLLTMLFMAVTSAGSSELIAVSSLCTYDIYRTYINPDASGEKILKVSRAVILGFGCFMGFLAV--I 454 (722)
Q Consensus 377 p~~~~~llp~~l~gl~l~~i~aA~~ST~ss~l~a~Ssi~t~DIy~~~i~p~as~k~ll~vsRi~vvv~~i~~~~~a~--~ 454 (722)
-....+--..|.++-++...+.=++|.++..+.+-+-...+|.-.- .|+ .+.++|-..+... ++.++.. +
T Consensus 329 ~~~l~~~y~~G~RAgvFfi~~~f~laql~~NISan~vaagnDl~~L--~Pk-----yinIrRG~~~~a~-ia~a~~PWnl 400 (572)
T KOG2466|consen 329 NQWLDTNYSAGARAGVFFIGFGFALAQLGTNISANSVAAGNDLSAL--LPK-----YINIRRGALICAI-IAWAICPWNL 400 (572)
T ss_pred HHHhccccccccchhhhHHHHHHHHHHHhcchhccccccchhhHhh--Ccc-----eEEecccHHHHHH-HHHHhCchHH
Confidence 2222222233666666777777778888887777777777887542 343 3555565543322 2333332 1
Q ss_pred hcccccHHHHHHHHHHHHHhhhHHHhhhh-----------------------hccCCCchhhHHHHHHHHHHHHHHHHHH
Q 004956 455 LNKAGVSLGWMYLAMGVLIGSAVLPIAFM-----------------------LLWRKANAIGAIAGTITGCLLGIITWLS 511 (722)
Q Consensus 455 ~~~~~i~l~~l~~~~g~~~~~~~~plllg-----------------------l~Wkr~n~~gAi~g~i~G~~~~i~~w~~ 511 (722)
++..+ ........++++.+|+...+++= .+ |+.-.+-|+++.++|++-.+-...
T Consensus 401 l~SSs-~F~t~LssysvfLspiagViiaDyF~iRk~~~~i~~~y~~~~g~yY~~-~~G~NwRA~vA~vcG~~P~lpG~a- 477 (572)
T KOG2466|consen 401 LSSSS-KFLTALSSYSVFLSPIAGVIIADYFLIRKGYYKITHLYSLSKGSYYYF-KKGINWRAFVAYVCGMAPNLPGFA- 477 (572)
T ss_pred hcccc-HHHHHHHHHHHHHhhccceEeehhheeecceeeeeeeeecCCCceeee-ecCccHHHHHHHHhccccCCcchh-
Confidence 22222 13323344566666665554431 12 344445577777777754332211
Q ss_pred hhhhcccccccC---CCCCCchhhHHHHHHHHhHhHhhhheecccCC
Q 004956 512 VTAIEYGRINLD---TTGRNAPMLAGNLVSILTGGAVHAVCSLLWPQ 555 (722)
Q Consensus 512 ~~~~~~G~i~~~---~~~~~~~~l~g~~vsl~~s~i~~vivSlltp~ 555 (722)
|.++.+ +.|...-...+-+++++++.+++.+.-++.|.
T Consensus 478 ------~~V~~~~~v~~G~~~~yy~~yf~sf~isf~vYwiLc~~fP~ 518 (572)
T KOG2466|consen 478 ------GSVGADIKVPDGAVKLYYLDYFFSFLISFLVYWILCLFFPV 518 (572)
T ss_pred ------hhcCcccccccceEEEEechHHHHHHHHHHHHHHHHhhcCc
Confidence 111100 01111112233455666666677666666554
No 87
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=90.95 E-value=34 Score=39.13 Aligned_cols=79 Identities=18% Similarity=0.225 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhhCchhhHHHHHHHHHHHHHHHHHHH
Q 004956 103 TILQSSNVAWEYGVSGPFWYASGATIQVLLFGVMAIEIKRKASHAHTVCEIVKARWGTAAHLVFLAFCFLTNIIVTAMLL 182 (722)
Q Consensus 103 t~lg~~g~ay~~Gi~~~~w~~~G~~l~ill~~~la~~lr~~~~~~~Ti~E~l~~Ryg~~~~~v~~~~~li~~i~~~a~ql 182 (722)
++.+.+.. .++|.+..+|+.++..+.++..++...++-.+.|+.-...++.++.||+...........+..+.+....+
T Consensus 18 ~~~~~~~~-a~~G~~~~~~~~i~~~~~~ip~al~~aEL~~~~P~~GG~y~~~~~a~G~~~gf~~gw~~w~~~~~~~p~~~ 96 (474)
T TIGR03813 18 SLRGLPAE-AEYGLSAAFYYLFAAIFFLVPVSLVAAELATAWPEKGGVFRWVGEAFGARWGFLAIFMLWAQVTIWFPTVL 96 (474)
T ss_pred HhhcchHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCceeeHhhhcChhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444544 35787764555555433332244444555555577888999999999998877766655555544443333
No 88
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=90.07 E-value=40 Score=38.56 Aligned_cols=54 Identities=11% Similarity=-0.104 Sum_probs=28.5
Q ss_pred HHHHHhhcCCCCCHHHHHHHhhCch----hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004956 137 AIEIKRKASHAHTVCEIVKARWGTA----AHLVFLAFCFLTNIIVTAMLLLGGSAVVN 190 (722)
Q Consensus 137 a~~lr~~~~~~~Ti~E~l~~Ryg~~----~~~v~~~~~li~~i~~~a~ql~g~a~vl~ 190 (722)
..++-.+.|+.-....+.++=+|++ ...+......+......+..-.+.+..+.
T Consensus 67 ~aEl~s~~P~~Gg~y~~~~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~ 124 (482)
T TIGR00907 67 LAELSSAYPTSGGQYFWSAKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLIL 124 (482)
T ss_pred HHHHHhhCCCCccHHHHHHHhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455455677888888777666543 33333344444444444444444444443
No 89
>PTZ00206 amino acid transporter; Provisional
Probab=90.05 E-value=41 Score=38.60 Aligned_cols=135 Identities=11% Similarity=0.018 Sum_probs=72.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhCChHHHH-HHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhhCchhhHHHHHH
Q 004956 91 ASVIVSQWTWAATILQSSNVAWEYGVSGPFW-YASGATIQVLLFGVMAIEIKRKASHAHTVCEIVKARWGTAAHLVFLAF 169 (722)
Q Consensus 91 a~si~at~~sa~t~lg~~g~ay~~Gi~~~~w-~~~G~~l~ill~~~la~~lr~~~~~~~Ti~E~l~~Ryg~~~~~v~~~~ 169 (722)
+++++.+.++ ...++.|..-.+.|+....- ..+.+.+...-...+ .+..++ .+..|..|+.++=||++.+.+..+.
T Consensus 66 ~fnL~~~~iG-aGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL-~~~~~~-~~~~sY~~la~~~~G~~g~~~v~~~ 142 (467)
T PTZ00206 66 AFNIASSTVG-AGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYAL-GVAADK-TNIRTYEGVARVLLGPWGSYYVAAT 142 (467)
T ss_pred HHHHHHHHHh-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-HHHhcc-CCCCCHHHHHHHHhCHHHHHHHHHH
Confidence 4444554444 34566666666666552211 111111111111122 222333 5688999999999999988888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC-C--hhH---------HHHHHHhHhhhHHhhccchHHHHHHHHHHH
Q 004956 170 CFLTNIIVTAMLLLGGSAVVNALTG-V--NIY---------AASFLIPLGVIVYTLAGGLKATFLASYIHS 228 (722)
Q Consensus 170 ~li~~i~~~a~ql~g~a~vl~~l~G-i--~~~---------~~~il~~~iv~iYT~~GGlrav~~TD~iQ~ 228 (722)
.++.....+..-+.-.+..++.++. . +.. ....+..++.+-.+..=-++..-++..+=.
T Consensus 143 ~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~i~~ 213 (467)
T PTZ00206 143 RAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVSTIAV 213 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccchHHHHHHHHHHH
Confidence 7777766666666666666665442 1 101 011222233444555666677777766644
No 90
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=89.38 E-value=42 Score=37.76 Aligned_cols=108 Identities=17% Similarity=0.209 Sum_probs=65.3
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHhhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCh--------hHHHHHHHh
Q 004956 134 GVMAIEIKRKASHAHTVCEIVKARWGTAAHLVFLAFCFLTNIIVTAMLLLGGSAVVNALTGVN--------IYAASFLIP 205 (722)
Q Consensus 134 ~~la~~lr~~~~~~~Ti~E~l~~Ryg~~~~~v~~~~~li~~i~~~a~ql~g~a~vl~~l~Gi~--------~~~~~il~~ 205 (722)
+....++-++.|+.-...++.++-+|++..........+......+......+..++.+.+.+ ....+.+..
T Consensus 62 a~~~~el~~~~p~~GG~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (466)
T COG0531 62 ALSYAELSSAIPSAGGAYAYAKRALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGLLSIGPLLIILIALAL 141 (466)
T ss_pred HHHHHHHHhcCCCCCCeeeehhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhcCCchHHHHHHHHH
Confidence 344445444557777899999999998877777777777666666665555565666666532 112222223
Q ss_pred HhhhHHhhccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 004956 206 LGVIVYTLAGGLKATFLASYIHSVIVHVVLVIFVYL 241 (722)
Q Consensus 206 ~iv~iYT~~GGlrav~~TD~iQ~vi~li~~li~~~~ 241 (722)
..+....-..|.|.......+-+++.++..+++.+.
T Consensus 142 ~~~~~~ln~~G~~~~~~~~~~~~~~~i~~~i~~~i~ 177 (466)
T COG0531 142 IALLTLLNLRGIKASAKINSIITILKIIILLIFIIL 177 (466)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344555666777666666666666655555544
No 91
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=89.22 E-value=9.9 Score=43.84 Aligned_cols=136 Identities=13% Similarity=0.218 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcC----------CCCChhhHHhcCCCCChHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 004956 44 YSVILGFGAFFAVFTSFLVWLEKRYVG----------SRHTSEWFNTAGRNVKTGLIASVIVSQWTWAATILQSSNVAWE 113 (722)
Q Consensus 44 y~vvi~~~~yfal~~~~~~~~~~r~~~----------~~~ssedF~~AgRsv~~~l~a~si~at~~sa~t~lg~~g~ay~ 113 (722)
|.++....+|....-..+.++.+|-.+ +.+|=.||.=.+| +++-.--+++-.++.=++| |-.+.+
T Consensus 5 ~~v~aa~~iy~igYr~Yg~fi~eKV~~~dp~R~TPA~~~nDG~DYVPtnk----~vlfGhHFaaIAGAGPivG-PvlAAq 79 (575)
T COG1966 5 WFVLAAAIVYAIGYFFYGKFIAEKVFRLDPNRPTPAHRKNDGVDYVPTNK----WVLFGHHFASIAGAGPIVG-PALAAQ 79 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHheeecCCCCCCCceeccCCcccccCCc----hhhhHHHHHHHhccCcchh-HHHHHH
Confidence 344444455555444455554443322 1234556655554 4444455565556666666 667888
Q ss_pred hC-ChHHHHHHHHHHHHHHH--HHHHHHHHHhhcCCCCCHHHHHHHhhCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004956 114 YG-VSGPFWYASGATIQVLL--FGVMAIEIKRKASHAHTVCEIVKARWGTAAHLVFLAFCFLTNIIVTAMLLLGGSA 187 (722)
Q Consensus 114 ~G-i~~~~w~~~G~~l~ill--~~~la~~lr~~~~~~~Ti~E~l~~Ryg~~~~~v~~~~~li~~i~~~a~ql~g~a~ 187 (722)
+| ..+..|.-+|..+.=-. +..+..-.|| +..|++|+.++--|+.++..+.+.+++..++..+..-...+.
T Consensus 80 ~G~Lp~~LWIl~G~VfaGaVhD~~~L~~SvR~---~G~Si~~ia~~~lG~~a~~~~~~~~l~iliiv~Avfa~vv~~ 153 (575)
T COG1966 80 YGWLPAFLWILLGCVFAGAVHDYFSLMLSVRH---GGKSIGEIAGKYLGRTAKVFFLLLALILLILVGAVFAAVIAK 153 (575)
T ss_pred hcCcHHHHHHHHhhhhhhhhhhhhheeeeecc---CCccHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99 56667988886543222 2222333444 689999999999999999988888887777766654443333
No 92
>PLN02776 prenyltransferase
Probab=89.01 E-value=37 Score=37.31 Aligned_cols=30 Identities=10% Similarity=0.441 Sum_probs=21.9
Q ss_pred hhhhccCCCchhhHHHHHHHHHHHHHHHHHH
Q 004956 481 AFMLLWRKANAIGAIAGTITGCLLGIITWLS 511 (722)
Q Consensus 481 llgl~Wkr~n~~gAi~g~i~G~~~~i~~w~~ 511 (722)
+... .||.+....+.|.+.|..--++.|..
T Consensus 115 vYt~-lKR~t~~~~~lG~~~Ga~ppL~Gw~A 144 (341)
T PLN02776 115 VYTP-LKQIHPANTWVGAVVGAIPPLMGWAA 144 (341)
T ss_pred HHHh-HccCCchhHHHHHHHHHHHHHHHHHH
Confidence 4553 79999888888888885445667754
No 93
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=85.25 E-value=78 Score=36.46 Aligned_cols=90 Identities=14% Similarity=0.128 Sum_probs=52.5
Q ss_pred CCCCChHHHHHHHHHHHHhHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCHHHHHHHhhCc
Q 004956 82 GRNVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGPFWYASGATIQVLLFGVMAIEIKRKASH-AHTVCEIVKARWGT 160 (722)
Q Consensus 82 gRsv~~~l~a~si~at~~sa~t~lg~~g~ay~~Gi~~~~w~~~G~~l~ill~~~la~~lr~~~~~-~~Ti~E~l~~Ryg~ 160 (722)
.|+++.+-+..-.+++-.+.. +.+......|.+..+|+.++..+..+..++...++-.+.|+ .-....+.++-+|+
T Consensus 6 ~~~l~~~~l~~~~~~~vig~~---~~~~~~~~~G~~~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y~w~~~~~G~ 82 (496)
T PRK15238 6 KKKLSLIGLILMIFTSVFGFA---NSPRAFYLMGYSAIPWYILSAILFFIPFALMMAEYGSAFKDEKGGIYSWMNKSVGP 82 (496)
T ss_pred cCeeeHHHHHHHHHHHHHhCC---chHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHcCc
Confidence 356777666555444444321 22322335677765666665544434344545566555575 68999999999999
Q ss_pred hhhHHHHHHHHHHH
Q 004956 161 AAHLVFLAFCFLTN 174 (722)
Q Consensus 161 ~~~~v~~~~~li~~ 174 (722)
+...+........+
T Consensus 83 ~~gf~~~w~~~~~~ 96 (496)
T PRK15238 83 KFAFIGTFMWFASY 96 (496)
T ss_pred hHHHHHHHHHHHHH
Confidence 87765444443333
No 94
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=85.08 E-value=73 Score=36.32 Aligned_cols=89 Identities=18% Similarity=0.230 Sum_probs=65.6
Q ss_pred HHhhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC------ChhHHHHHHHhHhhhHHhhccchHHHHHHHHHHH
Q 004956 155 KARWGTAAHLVFLAFCFLTNIIVTAMLLLGGSAVVNALTG------VNIYAASFLIPLGVIVYTLAGGLKATFLASYIHS 228 (722)
Q Consensus 155 ~~Ryg~~~~~v~~~~~li~~i~~~a~ql~g~a~vl~~l~G------i~~~~~~il~~~iv~iYT~~GGlrav~~TD~iQ~ 228 (722)
.++||+.+|.+.-+..+++.+..++.-+.=.+.-++.+.+ +|...-+++.....+.-....-+|...-...+--
T Consensus 131 ~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~~~~s~~~~i~~~~~~~lll~~Ir~Lk~Lsp~Sl~An 210 (449)
T KOG1304|consen 131 LRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHSPGVLSVRLYILIQLPPLLLLNLIRNLKILSPFSLFAN 210 (449)
T ss_pred HHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccCCCCccHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHH
Confidence 6788888888888877888777766655555666665544 3444444555556667788889999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 004956 229 VIVHVVLVIFVYLVY 243 (722)
Q Consensus 229 vi~li~~li~~~~v~ 243 (722)
+++++++.++....+
T Consensus 211 v~~~~g~~ii~~y~~ 225 (449)
T KOG1304|consen 211 VFILVGLAIIMYYLV 225 (449)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999888887643
No 95
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=77.59 E-value=0.37 Score=53.55 Aligned_cols=150 Identities=9% Similarity=-0.002 Sum_probs=79.9
Q ss_pred CCCChHHHHHHHHHHHHhHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHhh---cCCCCCHHHHHHHhhC
Q 004956 83 RNVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGPFWYASGATIQVLLFGVMAIEIKRK---ASHAHTVCEIVKARWG 159 (722)
Q Consensus 83 Rsv~~~l~a~si~at~~sa~t~lg~~g~ay~~Gi~~~~w~~~G~~l~ill~~~la~~lr~~---~~~~~Ti~E~l~~Ryg 159 (722)
|+-+++-.+..++.+.+|+ ..++.|-.-++.|+....-..+...+....-..+..+.+++ ..+.+|..|+.++-||
T Consensus 1 ~~~s~~~~~~~l~~~~iG~-G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~G 79 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGA-GILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAFG 79 (409)
T ss_pred CCccHHHHHHHHHHHHHhH-HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccc
Confidence 3445556666666666554 45677777777776532111111111001111111222221 2579999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-------ChhHHHHHHHhHhhhHHhhccchHHHHHHHHHHHHHHH
Q 004956 160 TAAHLVFLAFCFLTNIIVTAMLLLGGSAVVNALTG-------VNIYAASFLIPLGVIVYTLAGGLKATFLASYIHSVIVH 232 (722)
Q Consensus 160 ~~~~~v~~~~~li~~i~~~a~ql~g~a~vl~~l~G-------i~~~~~~il~~~iv~iYT~~GGlrav~~TD~iQ~vi~l 232 (722)
++.+.+..+..++.+.......+.-.+..++.+.+ .+.....++..+++..-+..-=++...+...+-.+.++
T Consensus 80 ~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~~~~~~~ 159 (409)
T PF01490_consen 80 PKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGDLFISRYVWIIIFALIVLPLSFLKNLKSLRYLSILGLFSIF 159 (409)
T ss_pred ccccccccchheeccccccceeEEEeeeeeecccccccccccccccccccccccccccccccchhhHHHHHhhhhhhccc
Confidence 98877766666655554443333334444444332 34444445555555555666666666666655554444
Q ss_pred H
Q 004956 233 V 233 (722)
Q Consensus 233 i 233 (722)
.
T Consensus 160 ~ 160 (409)
T PF01490_consen 160 Y 160 (409)
T ss_pred e
Confidence 3
No 96
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=76.93 E-value=1.4e+02 Score=34.02 Aligned_cols=133 Identities=13% Similarity=0.045 Sum_probs=70.1
Q ss_pred hcCCCCChHHHHHHHHHHHHhHHHHHHHHHHHHHhCChHHHH-HHHHHHHHHHHHHHHHHHHHhhcCCC-----CCHHHH
Q 004956 80 TAGRNVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGPFW-YASGATIQVLLFGVMAIEIKRKASHA-----HTVCEI 153 (722)
Q Consensus 80 ~AgRsv~~~l~a~si~at~~sa~t~lg~~g~ay~~Gi~~~~w-~~~G~~l~ill~~~la~~lr~~~~~~-----~Ti~E~ 153 (722)
...|+-+++..++..+..-. +..+++.|-.--+.|+.+..- ..+.+.+.. -.+.+..+..+..+.. .+.+|.
T Consensus 33 ~~~~~~s~~~a~~~~i~~~~-G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~-YT~~LL~~~~~~~~~~~~~r~~~Y~dl 110 (437)
T KOG1303|consen 33 TPSRGGSWWQAAFHIINALI-GAGVLSLPYALAQLGWISGIVILLLFAIITL-YTATLLSRCWEMHEAVPGKRRYRYPDL 110 (437)
T ss_pred ccCCCCcceehhhheehhhh-hhhhhhhHHHHHhCchHHHHHHHHHHHHHHH-HHHHHHHHHHHhccCCCCccCCChHHH
Confidence 35788788887777665443 355667765555556553111 111111111 0122222333322333 459999
Q ss_pred HHHhhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--------ChhHHHHHHHhHhhhHHhhc
Q 004956 154 VKARWGTAAHLVFLAFCFLTNIIVTAMLLLGGSAVVNALTG--------VNIYAASFLIPLGVIVYTLA 214 (722)
Q Consensus 154 l~~Ryg~~~~~v~~~~~li~~i~~~a~ql~g~a~vl~~l~G--------i~~~~~~il~~~iv~iYT~~ 214 (722)
-++-||++.|.+......+.....+...+..+++.++.+.. ++...-+++++++.+..+.+
T Consensus 111 ~~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~~l~~~~f~iif~~i~~~~s~l 179 (437)
T KOG1303|consen 111 GQAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDNSLDKQYFIIIFGLIVLPLSQL 179 (437)
T ss_pred HHHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccceehhhhHHHHHHHHHHC
Confidence 99999977777666666555555555555556666665532 11223344555555555543
No 97
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=73.82 E-value=1.8e+02 Score=33.60 Aligned_cols=90 Identities=14% Similarity=0.142 Sum_probs=49.1
Q ss_pred HHHHHHhhCchhhHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHhhC--ChhHHHHHHHhHhhhHHhhccchHHHHHHHHH
Q 004956 151 CEIVKARWGTAAHLVFLAFCFLTNIIVT-AMLLLGGSA-VVNALTG--VNIYAASFLIPLGVIVYTLAGGLKATFLASYI 226 (722)
Q Consensus 151 ~E~l~~Ryg~~~~~v~~~~~li~~i~~~-a~ql~g~a~-vl~~l~G--i~~~~~~il~~~iv~iYT~~GGlrav~~TD~i 226 (722)
.-|+.+-||+..........++...+.. +.+-...+. .++..++ -.+..+.-+++...+.|...=+..+|-++-.+
T Consensus 81 ~ayi~~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~c~~p~~~~~lla~~~l~~lt~~n~~~V~~a~~v 160 (479)
T KOG1287|consen 81 YAYISEAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPLCDVPRVASKLLAAALLVLLTLINSFSVKWATRV 160 (479)
T ss_pred hhhHHHHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 3467778888766555555555544443 444444443 3555554 22334444444445555555556666677777
Q ss_pred HHHHHHHHHHHHHH
Q 004956 227 HSVIVHVVLVIFVY 240 (722)
Q Consensus 227 Q~vi~li~~li~~~ 240 (722)
|-+..+.=++++..
T Consensus 161 q~~ft~~Kl~al~l 174 (479)
T KOG1287|consen 161 QIVFTIAKLLALLL 174 (479)
T ss_pred HHHHHHHHHHHHHH
Confidence 76665544444333
No 98
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=73.17 E-value=36 Score=39.40 Aligned_cols=180 Identities=16% Similarity=0.045 Sum_probs=100.6
Q ss_pred CcceehhheeeCCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCccccCCC---CchHHHHHHhhhhH
Q 004956 317 DNGYWVSAIAARPS-STHKGYLLGGLVWFAVPFSLATSLGLGALALDL-----PLTETEASHG---LVPPATAIALMGKG 387 (722)
Q Consensus 317 dq~~~QR~~aAk~~-~a~k~~~l~~~l~~~ip~~~~~~iGl~a~al~~-----~l~~~~~~~~---~v~p~~~~~llp~~ 387 (722)
-|+++|+.-..|++ ++++......+.++..-+++ ...|.+.....+ +.++++.-+. ..+|.... -.
T Consensus 255 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~----g~ 329 (493)
T COG0591 255 LPRFMAAKSIKSLPKSARLAGILWPLYCLLGAFLL-GLLGIAYFPLLPDLSVPLLNPELVFPYLILALFPPWIA----GL 329 (493)
T ss_pred hhhhhhhccHhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcccccccccCCCHHHHHHHHHHHHChHHHH----HH
Confidence 46788888888864 78887777666555443333 346777655442 2222322222 22332222 23
Q ss_pred HHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhcCCCCCcchhhHhhhHHHHHHHHHHHHHHHHhcccccHHHHHHH
Q 004956 388 GSILLLTMLFMAVTSAGSSELIAVSSLCTYDIYRTYINPDASGEKILKVSRAVILGFGCFMGFLAVILNKAGVSLGWMYL 467 (722)
Q Consensus 388 l~gl~l~~i~aA~~ST~ss~l~a~Ssi~t~DIy~~~i~p~as~k~ll~vsRi~vvv~~i~~~~~a~~~~~~~i~l~~l~~ 467 (722)
....+++++.+.+.|...+...+.+--+-+++.|+. ..+.+....-|+.=+.+.+++..-.......-..-.++.+...
T Consensus 330 ~~~ailaAvmSt~ss~ll~~ss~~t~Diyk~~~~~~-a~~k~l~~i~r~~v~vi~~~a~~~a~~~~~~i~~l~~~~~~g~ 408 (493)
T COG0591 330 LLAAILAAVMSTASSQLLVASSAITRDIYKRFLRKN-ASEKELVRIGRVVVLVIALLALLLALLPPSSILGLVSLALAGF 408 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCC-CChhHhhHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHH
Confidence 455667788899999999999999999999999984 4544555555555444444444433222111000011222222
Q ss_pred HHHHHHhhhHHHhhhhhccCCCchhhHHHHHHHHHH
Q 004956 468 AMGVLIGSAVLPIAFMLLWRKANAIGAIAGTITGCL 503 (722)
Q Consensus 468 ~~g~~~~~~~~plllgl~Wkr~n~~gAi~g~i~G~~ 503 (722)
.. .+.++.+..+.---..||....|.++|+++++.
T Consensus 409 ~a-~~~p~~~~~L~wkr~t~~ga~agmi~G~i~~~~ 443 (493)
T COG0591 409 GA-QFLPALLLGLFWKRATKRGAIAGMIAGLIVVLL 443 (493)
T ss_pred HH-HHHHHHhheeeeccchHhHHHHHHHHHHHHHHH
Confidence 11 223333444444344466667777777777776
No 99
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=64.86 E-value=18 Score=38.09 Aligned_cols=75 Identities=20% Similarity=0.258 Sum_probs=39.7
Q ss_pred hhhhhccCCCchhhHHHHHHHHHHHHHHHHHHhh------hhcccccccCCCCCCchhhHHHHHHHHhHhHhhhheeccc
Q 004956 480 IAFMLLWRKANAIGAIAGTITGCLLGIITWLSVT------AIEYGRINLDTTGRNAPMLAGNLVSILTGGAVHAVCSLLW 553 (722)
Q Consensus 480 lllgl~Wkr~n~~gAi~g~i~G~~~~i~~w~~~~------~~~~G~i~~~~~~~~~~~l~g~~vsl~~s~i~~vivSllt 553 (722)
++.|.+|--.|..+.-+==.+|+.+++.+|-... ...+|.+..+.-....++ -|.+++++..+-.++.+.++
T Consensus 59 mlgG~lW~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~--Ln~~G~~l~~~~~~~f~fik 136 (254)
T PF07857_consen 59 MLGGALWATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPW--LNYIGVALVLVSGIIFSFIK 136 (254)
T ss_pred HhhhhhhhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhH--HHHHHHHHHHHHHHheeeec
Confidence 4556777766666655444455555666664311 011233322211122333 35667777777777778887
Q ss_pred CCC
Q 004956 554 PQN 556 (722)
Q Consensus 554 p~~ 556 (722)
++.
T Consensus 137 ~~~ 139 (254)
T PF07857_consen 137 SEE 139 (254)
T ss_pred CCC
Confidence 665
No 100
>PLN03074 auxin influx permease; Provisional
Probab=58.84 E-value=3.3e+02 Score=31.32 Aligned_cols=79 Identities=10% Similarity=0.090 Sum_probs=42.2
Q ss_pred CHHHHHHHhhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CChhHHHHHHHhHhhhHHhhccchHHHHHHHHHH
Q 004956 149 TVCEIVKARWGTAAHLVFLAFCFLTNIIVTAMLLLGGSAVVNALT-GVNIYAASFLIPLGVIVYTLAGGLKATFLASYIH 227 (722)
Q Consensus 149 Ti~E~l~~Ryg~~~~~v~~~~~li~~i~~~a~ql~g~a~vl~~l~-Gi~~~~~~il~~~iv~iYT~~GGlrav~~TD~iQ 227 (722)
+..|..+..+|+..+.+..++..+..+..+..++...+..+..+- .++....+.++.++.+.-+..=-++...+..++=
T Consensus 121 ~~~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~~~~~~~~~~~i~~~v~~~~~~i~sl~~l~~~S~ig 200 (473)
T PLN03074 121 QWFEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLG 200 (473)
T ss_pred HHHHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhCCCcCCCeEEeehHHHHHHHHHccCHHHHHHHHHHH
Confidence 457788889999887777666666666666666666555444442 2332222222222222233333366666544333
No 101
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=56.49 E-value=3.1e+02 Score=31.74 Aligned_cols=57 Identities=9% Similarity=-0.101 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhcCCCCCcchhhHhhhHHHHHHH
Q 004956 388 GSILLLTMLFMAVTSAGSSELIAVSSLCTYDIYRTYINPDASGEKILKVSRAVILGFG 445 (722)
Q Consensus 388 l~gl~l~~i~aA~~ST~ss~l~a~Ssi~t~DIy~~~i~p~as~k~ll~vsRi~vvv~~ 445 (722)
+.+.++++.++.+-|.+.+.-...+.=+-+...++- .++.+..+.-|+.-+.+.+++
T Consensus 330 ~~a~ilAA~mST~~s~l~a~ss~~~~Diy~~~~~~~-~s~~~~l~~~Ri~~v~~~~~a 386 (502)
T PRK15419 330 LLSAILAAVMSTLSCQLLVCSSAITEDLYKAFLRKH-ASQKELVWVGRVMVLVVALVA 386 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CChHHHHHHHHHHHHHHHHHH
Confidence 445556677777777777777888888888887764 355566666666555544444
No 102
>KOG1291 consensus Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=49.85 E-value=4e+02 Score=30.65 Aligned_cols=98 Identities=15% Similarity=0.253 Sum_probs=62.7
Q ss_pred HHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhhCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004956 109 NVAWEYGVSGPFWYASGATIQVLLFGVMAIEIKRKASHAHTVCEIVKARWGTAAHLVFLAFCFLTNIIVTAMLLLGGSAV 188 (722)
Q Consensus 109 g~ay~~Gi~~~~w~~~G~~l~ill~~~la~~lr~~~~~~~Ti~E~l~~Ryg~~~~~v~~~~~li~~i~~~a~ql~g~a~v 188 (722)
+.+.++|+.- .|.-+-+.+.-++.--++.|+-- -...-+.|.-++-|.+..|.+.-++.=++.+..--.+..|.+..
T Consensus 53 qaGA~~~YkL-LwilL~a~~~alllQ~LaARLGv--VTG~hLAe~Cr~~Ypk~~~~~Lwi~aEiAiI~sDiqEVIGTAiA 129 (503)
T KOG1291|consen 53 QAGARAGYKL-LWILLLANFMALLLQRLAARLGV--VTGKHLAEICREEYPKWPRMVLWIMAEIAIIASDIQEVIGTAIA 129 (503)
T ss_pred hcchhhchhH-HHHHHHHHHHHHHHHHHHHHHcc--cccHHHHHHHHHHccccHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4455556653 45433333222222233444321 12233788888899998888776666566666666778899999
Q ss_pred HHHhhCChhHHHHHHHhHhhh
Q 004956 189 VNALTGVNIYAASFLIPLGVI 209 (722)
Q Consensus 189 l~~l~Gi~~~~~~il~~~iv~ 209 (722)
++.++++|.|+++++..+=+.
T Consensus 130 lniL~~IPL~~GVliTilD~f 150 (503)
T KOG1291|consen 130 LNILSNIPLWAGVLITILDTF 150 (503)
T ss_pred HHHHhCCcHHHHHHHHHHHHH
Confidence 999999999999988755433
No 103
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=44.46 E-value=5.9e+02 Score=29.90 Aligned_cols=40 Identities=13% Similarity=0.133 Sum_probs=22.2
Q ss_pred HHHHHHHhhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004956 150 VCEIVKARWGTAAHLVFLAFCFLTNIIVTAMLLLGGSAVV 189 (722)
Q Consensus 150 i~E~l~~Ryg~~~~~v~~~~~li~~i~~~a~ql~g~a~vl 189 (722)
..++.-.|||+-...+......+.+....+..-++.+..+
T Consensus 120 aa~lap~k~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i 159 (550)
T KOG1289|consen 120 AAVLAPPKYGPFASWVTGWLNYLGQATGVASITYSLAQLI 159 (550)
T ss_pred HHHhcCcchhhHHHHHHHHHHHHHHHhhchhhhHHHHHHH
Confidence 3455566888776666666666655444444444444433
No 104
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=43.69 E-value=4.2e+02 Score=28.05 Aligned_cols=31 Identities=6% Similarity=0.281 Sum_probs=18.1
Q ss_pred hhhhhccCCCchhhHHHHHHHHHHHHHHHHH
Q 004956 480 IAFMLLWRKANAIGAIAGTITGCLLGIITWL 510 (722)
Q Consensus 480 lllgl~Wkr~n~~gAi~g~i~G~~~~i~~w~ 510 (722)
++....-||.+....+.+.+.|...-+..|.
T Consensus 121 ~~Yt~~lKr~~~~~~~v~~~~g~~~~l~g~~ 151 (279)
T PRK12869 121 VVYTIWLKPRTWLNIVIGGFAGNAAALAGYA 151 (279)
T ss_pred hhhCcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 3445556777776666666666644344443
No 105
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=41.51 E-value=97 Score=32.30 Aligned_cols=19 Identities=16% Similarity=0.135 Sum_probs=12.9
Q ss_pred hhhhhhcCchhhhHhHHHH
Q 004956 676 LQTIMLAIPEAENMYLLEK 694 (722)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~ 694 (722)
.+.+.++.||+|+.--.|+
T Consensus 173 ~kk~i~s~DEgEk~i~y~~ 191 (248)
T PF11368_consen 173 VKKWIESCDEGEKQINYEA 191 (248)
T ss_pred HHHHHHhCCHHHHHHHHHH
Confidence 4556777888887655544
No 106
>PRK10484 putative transporter; Provisional
Probab=40.75 E-value=2.7e+02 Score=32.43 Aligned_cols=46 Identities=7% Similarity=-0.104 Sum_probs=23.8
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHhhhhcCCCCC-cchhhHhhhHHH
Q 004956 396 LFMAVTSAGSSELIAVSSLCTYDIYRTYINPDAS-GEKILKVSRAVI 441 (722)
Q Consensus 396 i~aA~~ST~ss~l~a~Ssi~t~DIy~~~i~p~as-~k~ll~vsRi~v 441 (722)
++++.++..-|...+.-...+.-+-+...+|-.+ +....+.-|+.=
T Consensus 332 ~~a~ilAA~mST~~s~l~s~st~~t~Diy~~~~~~~~s~~~~l~v~R 378 (523)
T PRK10484 332 FAAVLFGAILSTFNGFLNSASTLFSLDIYKPIINPNASEKQLVKVGK 378 (523)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHH
Confidence 4445456666666665555666666666555432 233433334433
No 107
>COG2056 Predicted permease [General function prediction only]
Probab=39.13 E-value=1.2e+02 Score=33.47 Aligned_cols=181 Identities=10% Similarity=0.050 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhcCCCCCcchhhHhhhHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Q 004956 392 LLTMLFMAVTSAGSSELIAVSSLCTYDIYRTYINPDASGEKILKVSRAVILGFGCFMGFLAVILNKAGVSLGWMYLAMGV 471 (722)
Q Consensus 392 ~l~~i~aA~~ST~ss~l~a~Ssi~t~DIy~~~i~p~as~k~ll~vsRi~vvv~~i~~~~~a~~~~~~~i~l~~l~~~~g~ 471 (722)
.+.|.||++.|-. .....+.+-+.+.. .+.++++-....|...+....+..+++-.+-+..+ .
T Consensus 62 alLGafAvaIsks-----Gltd~l~~kvi~~i--~~~~~~~~~~~~K~~l~~~i~~~a~~SQNliPVHI----------A 124 (444)
T COG2056 62 ALLGAFAVAISKS-----GLTDVLAKKVIRLL--GGDESRRGKTLKKYLLLLIILLIACFSQNLIPVHI----------A 124 (444)
T ss_pred HHHHHHHHHHHhc-----ChHHHHHHHHHHHh--cCCccccchhhHHHHHHHHHHHHHHhcCCccceee----------e
Q ss_pred HHhhhHHHhhhhhccCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccC-------------CCCCCchhhHHHHHH
Q 004956 472 LIGSAVLPIAFMLLWRKANAIGAIAGTITGCLLGIITWLSVTAIEYGRINLD-------------TTGRNAPMLAGNLVS 538 (722)
Q Consensus 472 ~~~~~~~plllgl~Wkr~n~~gAi~g~i~G~~~~i~~w~~~~~~~~G~i~~~-------------~~~~~~~~l~g~~vs 538 (722)
+++-+.||++.-+=--|.-|+..-..+-.|+ ..=....+.-+|.+..+ ........++-...+
T Consensus 125 FIPilIPPLL~lfn~LkiDRR~vAc~ltFGL----~apYi~LPvGFG~IF~~ii~~n~~~a~~~~~~~~V~~am~ip~lg 200 (444)
T COG2056 125 FIPILIPPLLSLFNKLKIDRRLVACVLTFGL----TAPYILLPVGFGLIFQSIILDNINAAGVSLSVNQVPKAMWIPGLG 200 (444)
T ss_pred eehhhhhHHHHHHHHhhhhHHHHHHHhhccc----ccceeEecchHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHHHH
Q ss_pred HHhHhHhhhheecccCCCCChhhhhhhhhcccccCCCCCchhhHHHHHHHHHHHHHHHHHHHhhh
Q 004956 539 ILTGGAVHAVCSLLWPQNYDWDTTKQITMVEKEKGELPVDEFKEEKLMKAKAWIVKWGVGFTVVI 603 (722)
Q Consensus 539 l~~s~i~~vivSlltp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k~~~~~~~~~~~~~ 603 (722)
+++.+++.+.+|+=+|+.|+-++..+.+. +.++.+..+++..+....+++.+++.
T Consensus 201 Mi~GLl~ai~~~YrKpReY~~~~~~~~~~----------~~~~~~~~~~~~~~~alvaiv~af~v 255 (444)
T COG2056 201 MIVGLLLAIFVSYRKPREYQTNEIEEAEN----------AIEDYAALEEYKLALALVAIVVAFAV 255 (444)
T ss_pred HHHHHHHHHHHhhcCCccccccccchhhh----------hhhhhcchhhHHHHHHHHHHHHHHHH
No 108
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=36.85 E-value=6.9e+02 Score=28.55 Aligned_cols=47 Identities=26% Similarity=0.273 Sum_probs=26.9
Q ss_pred CCCCch---HHHHHHh-hhhHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Q 004956 371 SHGLVP---PATAIAL-MGKGGSILLLTMLFMAVTSAGSSELIAVSSLCTY 417 (722)
Q Consensus 371 ~~~~v~---p~~~~~l-lp~~l~gl~l~~i~aA~~ST~ss~l~a~Ssi~t~ 417 (722)
.+++++ |.+..+. ++.-...+++..++-|.+|+.-|.+-...+.+.+
T Consensus 283 GpgL~Fi~LP~if~~mp~G~~~~~lFFl~l~fAalTS~iSmlE~~va~l~~ 333 (439)
T COG0733 283 GPGLVFIVLPAVFNQMPLGTLFGILFFLLLLFAALTSAISMLEVLVAALID 333 (439)
T ss_pred CCeeehhHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456554 4443332 3445566666666666666666666666655544
No 109
>PF11654 DUF2665: Protein of unknown function (DUF2665); InterPro: IPR024242 This entry represents the non classical export protein 1 family. Family members are Involved in a novel pathway of export of proteins that lack a cleavable signal sequence [].; GO: 0009306 protein secretion
Probab=36.58 E-value=65 Score=24.83 Aligned_cols=19 Identities=16% Similarity=0.548 Sum_probs=16.4
Q ss_pred hcCCCCCHHHHHHHhhCch
Q 004956 143 KASHAHTVCEIVKARWGTA 161 (722)
Q Consensus 143 ~~~~~~Ti~E~l~~Ryg~~ 161 (722)
..|..||..|++++||+++
T Consensus 28 ~rp~g~~L~eLl~~k~~~~ 46 (47)
T PF11654_consen 28 GRPEGHSLNELLRRKWNKW 46 (47)
T ss_pred cCCCCCcHHHHHHHHhhcc
Confidence 4589999999999999864
No 110
>TIGR00819 ydaH p-Aminobenzoyl-glutamate transporter family. The p-Aminobenzoyl-glutamate transporter family includes two transporters, the AbgT (YdaH) protein of E. coli and MtrF of Neisseria gonorrhoea. AbgT is apparently cryptic in wild type cells, but when expressed on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs. p-Aminobenzoate is a constituent of and a precursor for the biosynthesis of folic acid.
Probab=35.70 E-value=3.2e+02 Score=31.82 Aligned_cols=21 Identities=14% Similarity=-0.392 Sum_probs=11.7
Q ss_pred CCCccchhHHHHHHHHHHHHHh
Q 004956 616 EFSLGYFTFWAVVAIAWGTIGS 637 (722)
Q Consensus 616 ~fs~~~f~~wv~~~~~w~~~~~ 637 (722)
.+ ++-|-.|++--+.=.|...
T Consensus 297 l~-~SPf~~~iipii~~~Fli~ 317 (513)
T TIGR00819 297 VA-GSPFIKGIVPFIFLFFALP 317 (513)
T ss_pred cc-CChHHHhHHHHHHHHHHHH
Confidence 45 5666666665555444433
No 111
>PF03600 CitMHS: Citrate transporter; InterPro: IPR004680 Characterised proteins in this entry belong mostly to the divalent anion symporter family, which is found in bacteria, archaea and eukaryotes. Substrates shown to be transported by these proteins include citrate and phosphate []. This entry also contains the melanocyte-specific transporter protein P, mutation of which leads to albinism []. Another protein in this entry, SAC1, has been shown to regulate the sulphur deprivation response in Chlamydomonas by inducing cysteine biosynthesis, though its precise role in this induction is not known [].; GO: 0015137 citrate transmembrane transporter activity, 0015746 citrate transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=32.71 E-value=5.2e+02 Score=27.98 Aligned_cols=66 Identities=20% Similarity=0.231 Sum_probs=35.7
Q ss_pred hhCChhHHHHHHHhHhhhHHhhccchHHHHH------HHHHHHHHHHHHHHHHHHHHHhhcccCCChHHHHHHHHH
Q 004956 192 LTGVNIYAASFLIPLGVIVYTLAGGLKATFL------ASYIHSVIVHVVLVIFVYLVYTASSELGSPSVMYNRLVE 261 (722)
Q Consensus 192 l~Gi~~~~~~il~~~iv~iYT~~GGlrav~~------TD~iQ~vi~li~~li~~~~v~~~~~~~GG~~~l~~~L~~ 261 (722)
..|..+....++.+.+..+-+-+-..|...- ..-.+.++++.++..+.-.+ ++.|..+.+.+.+.+
T Consensus 219 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~l----~~tG~~~~la~~l~~ 290 (351)
T PF03600_consen 219 VSGLVPIWIALLIGALLALLTNCKDLKEAYRVLNSGASIDWNTLLFFAGLFIFVGAL----SNTGAFEALADWLLS 290 (351)
T ss_pred HhccCcHHHHHHHHHHHHHHHhcccchhhhHHHHhhccchHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHH
Confidence 4554444444444444444444555555555 44556666666665555432 445766666666554
No 112
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=31.21 E-value=75 Score=29.64 Aligned_cols=35 Identities=11% Similarity=0.080 Sum_probs=20.0
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 004956 37 VLNQGVGYSVILGFGAFFAVFTSFLVWLEKRYVGS 71 (722)
Q Consensus 37 ~l~~~~gy~vvi~~~~yfal~~~~~~~~~~r~~~~ 71 (722)
-++++.=-+|++|+.+-.+++++++.|..||.+||
T Consensus 60 ~fs~~~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 60 RFSEPAIIGIIFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp SSS-TCHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred CccccceeehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44444445566666666666666777878774443
No 113
>PF11744 ALMT: Aluminium activated malate transporter; InterPro: IPR020966 This entry represents an malate transporter which has been is identified as being critical for aluminium tolerance in Arabidopsis thaliana [].; GO: 0010044 response to aluminum ion
Probab=29.62 E-value=5.3e+02 Score=29.14 Aligned_cols=48 Identities=13% Similarity=0.102 Sum_probs=25.6
Q ss_pred cccccC-CCCccchhH-HHHHHHHHHHHHhhhheeeccccchHHHHHHHhhc
Q 004956 610 LTLPAG-EFSLGYFTF-WAVVAIAWGTIGSAVIIALPLIESWETIKSVCVGM 659 (722)
Q Consensus 610 ~~~~~~-~fs~~~f~~-wv~~~~~w~~~~~~~~~~~p~~e~~~~~~~~~~~~ 659 (722)
.-|+.+ .+.-...+. =+++++.|.. ..-+.++|.|.+.+--..+.+.+
T Consensus 137 s~yr~~~~~~~A~~R~~~I~iGv~i~l--~vsi~IfPvwAg~~Lh~~~a~~l 186 (406)
T PF11744_consen 137 SGYRTDEFLMLAVWRLLTIVIGVAICL--LVSIFIFPVWAGEDLHKLTAKNL 186 (406)
T ss_pred ecCCcchHHHHHHHHHHHHHHHHHHHH--HHHHheeechhhHHHHHHHHHHH
Confidence 456555 333333332 2344444443 34567899999876555555444
No 114
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=28.38 E-value=43 Score=30.32 Aligned_cols=27 Identities=11% Similarity=-0.036 Sum_probs=20.1
Q ss_pred HHHHHHHhhhheeeccccchHHHHHHH
Q 004956 630 IAWGTIGSAVIIALPLIESWETIKSVC 656 (722)
Q Consensus 630 ~~w~~~~~~~~~~~p~~e~~~~~~~~~ 656 (722)
++.++++.+....|++|-|++.+.+..
T Consensus 4 ~~~vll~ll~~l~y~l~~g~~G~~~~~ 30 (105)
T PRK00888 4 LTLLLLALLVWLQYSLWFGKNGILDYW 30 (105)
T ss_pred HHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 345667777888899999988775554
No 115
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=27.92 E-value=4.4e+02 Score=30.57 Aligned_cols=24 Identities=8% Similarity=0.148 Sum_probs=15.6
Q ss_pred HHHHHHHHHhhhHHHh--hhhhccCC
Q 004956 465 MYLAMGVLIGSAVLPI--AFMLLWRK 488 (722)
Q Consensus 465 l~~~~g~~~~~~~~pl--llgl~Wkr 488 (722)
+....|.+-+...|+. ++|-+.+|
T Consensus 140 lr~llGl~es~~wP~~~~~lg~wy~~ 165 (495)
T KOG2533|consen 140 LRFLLGLFESGGWPGVVAILGNWYGK 165 (495)
T ss_pred HHHHHHHHhcccchHHHHHHHhhcCh
Confidence 4456677777777775 45666665
No 116
>PF02652 Lactate_perm: L-lactate permease; InterPro: IPR003804 L-lactate permease is an integral membrane protein probably involved in L-lactate transport.; GO: 0015129 lactate transmembrane transporter activity, 0015727 lactate transport
Probab=27.52 E-value=6.8e+02 Score=29.32 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=15.5
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHH
Q 004956 486 WRKANAIGAIAGTITGCLLGIITWLS 511 (722)
Q Consensus 486 Wkr~n~~gAi~g~i~G~~~~i~~w~~ 511 (722)
||+ -|...-..++.|...++..|..
T Consensus 202 ~k~-~r~~~p~~L~~g~~~~~~~~~~ 226 (522)
T PF02652_consen 202 WKG-VREVWPFALVAGLSFAIPQWLV 226 (522)
T ss_pred chh-HHHHHHHHHHHHHHHHHHHHHH
Confidence 443 3556666777777766665654
No 117
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=27.32 E-value=8.5e+02 Score=27.87 Aligned_cols=36 Identities=22% Similarity=0.126 Sum_probs=23.4
Q ss_pred HHHHHHHHHhcCCCCccccCCCCchHHHHHHh-hhhHHHHHHH
Q 004956 352 TSLGLGALALDLPLTETEASHGLVPPATAIAL-MGKGGSILLL 393 (722)
Q Consensus 352 ~~iGl~a~al~~~l~~~~~~~~~v~p~~~~~l-lp~~l~gl~l 393 (722)
+.+|.++.-+.++ |-+.+.|.+..+. +.+.=.|++.
T Consensus 34 ~fiGYa~fYl~Rk------nF~~a~p~l~e~~~lsk~~lG~i~ 70 (448)
T COG2271 34 IFIGYAAFYLTRK------NFNLAMPALIEDGGLSKTQLGILG 70 (448)
T ss_pred HHHHHHHHHHHHH------hHhhccHHHHHhcCCCHHHHHHHH
Confidence 3578887777432 4567788888877 6665555443
No 118
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=26.30 E-value=55 Score=30.61 Aligned_cols=19 Identities=11% Similarity=0.048 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 004956 49 GFGAFFAVFTSFLVWLEKR 67 (722)
Q Consensus 49 ~~~~yfal~~~~~~~~~~r 67 (722)
++++.+++++++..+..||
T Consensus 7 iii~~i~l~~~~~~~~~rR 25 (130)
T PF12273_consen 7 IIIVAILLFLFLFYCHNRR 25 (130)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334343333334444554
No 119
>PRK09395 actP acetate permease; Provisional
Probab=25.84 E-value=1.1e+03 Score=27.52 Aligned_cols=163 Identities=14% Similarity=0.099 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhcCCCCCcchhhHhhhHHHHHHHHHHHHHHHHhcccccHHHHHH
Q 004956 387 GGSILLLTMLFMAVTSAGSSELIAVSSLCTYDIYRTYINPDASGEKILKVSRAVILGFGCFMGFLAVILNKAGVSLGWMY 466 (722)
Q Consensus 387 ~l~gl~l~~i~aA~~ST~ss~l~a~Ssi~t~DIy~~~i~p~as~k~ll~vsRi~vvv~~i~~~~~a~~~~~~~i~l~~l~ 466 (722)
.+.+..++++++.+-|.+.+.-...+.=+-++..++--.++.+..+.-|+.-+.+.+++++....-...+.... +.+.+
T Consensus 360 lv~A~~lAA~mST~ss~lla~st~~~~Diy~~~~~~~~~s~~~~l~v~Ri~~v~igi~a~~~a~~~~~~~i~~~-~~~~~ 438 (551)
T PRK09395 360 FISAVAFATILAVVAGLTLAGASAVSHDLYANVIKKGKATERDELRVSKITTLVLGVVAIILGILFEKQNIAFM-VGLAF 438 (551)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccchhhhhHHHHHHHHHHHHHHHHHHccCCCcHHHH-HHHHH
Confidence 34455566666666666666666677777777664321244455666666666555555444332100010011 12222
Q ss_pred HHH-HHHHhhhHHHhhhhhccCCCchhhHHHHHHHHHHHHHHH---HHHhhhhcccccccCCCCCCchhhHHHHHHHHhH
Q 004956 467 LAM-GVLIGSAVLPIAFMLLWRKANAIGAIAGTITGCLLGIIT---WLSVTAIEYGRINLDTTGRNAPMLAGNLVSILTG 542 (722)
Q Consensus 467 ~~~-g~~~~~~~~plllgl~Wkr~n~~gAi~g~i~G~~~~i~~---w~~~~~~~~G~i~~~~~~~~~~~l~g~~vsl~~s 542 (722)
... ....++++..+.--=..++.--.|.+.|.++.+...+.. |.... ..+. +.- +..+|.+++..+++++.
T Consensus 439 ~~~~~~~~p~lllglfwkr~~~~gA~ag~i~G~~~~l~~~~~~~~~~~~~~--~~~~-~~~--~~~~~~~~~~~vs~~v~ 513 (551)
T PRK09395 439 AIAASANFPVLLLSMYWKGLTTRGAVIGGWLGLISAVVLMILSPTVWVDIL--GHEK-AIF--PYEYPALFSMPLAFVGI 513 (551)
T ss_pred HHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHcchhhhhcc--cccc-ccC--CccccHHHHHHHHHHHh
Confidence 222 222333444555555566666677777777777654432 22110 0011 111 11356677777777777
Q ss_pred hHhhhheecccCCC
Q 004956 543 GAVHAVCSLLWPQN 556 (722)
Q Consensus 543 ~i~~vivSlltp~~ 556 (722)
.++..+- --.+++
T Consensus 514 ~ivS~~t-~~~~~~ 526 (551)
T PRK09395 514 WFFSITD-NSARAK 526 (551)
T ss_pred heeeecC-CCcchh
Confidence 7777544 344443
No 120
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=24.91 E-value=1.1e+03 Score=27.06 Aligned_cols=59 Identities=10% Similarity=-0.010 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhcCCCCCcchhhHhhhHHHHHHHHH
Q 004956 388 GSILLLTMLFMAVTSAGSSELIAVSSLCTYDIYRTYINPDASGEKILKVSRAVILGFGCF 447 (722)
Q Consensus 388 l~gl~l~~i~aA~~ST~ss~l~a~Ssi~t~DIy~~~i~p~as~k~ll~vsRi~vvv~~i~ 447 (722)
..+.++++.++..-|.+.+.-...+-=+-+.+.++-. .+.+..+.-|+.-+.+.+++++
T Consensus 323 ~~a~ilaA~mST~~s~l~s~ss~~~~Diy~~~~~~~~-s~~~~l~v~R~~~v~~~~~~~~ 381 (487)
T TIGR02121 323 LLAAILAAIMSTISSQLLVSSSALTEDFYKAFFKREA-SQKELVMVGRLSVLVIAIIAII 381 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666677777766777777777666543 4445556666665555554443
No 121
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=24.36 E-value=8.9e+02 Score=25.89 Aligned_cols=33 Identities=15% Similarity=0.174 Sum_probs=23.0
Q ss_pred HHhhhhhccCCCchhh-HHHHHHHHHHHHHHHHHH
Q 004956 478 LPIAFMLLWRKANAIG-AIAGTITGCLLGIITWLS 511 (722)
Q Consensus 478 ~plllgl~Wkr~n~~g-Ai~g~i~G~~~~i~~w~~ 511 (722)
..++..-+-||.|... .+.|...|. .-+..|..
T Consensus 117 ~l~~~yp~~KR~t~~~~~~lG~~~g~-~~l~g~~A 150 (286)
T PRK12895 117 FLFIIDPFLKRYTAWRHIYMGSIIGL-GVLAGYLA 150 (286)
T ss_pred HHHHHHHHHHhCccccHHHHHHHHHh-HHHHHHHH
Confidence 3445566789999988 678988886 34555643
No 122
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=23.68 E-value=1.3e+02 Score=23.01 Aligned_cols=31 Identities=19% Similarity=0.415 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhh
Q 004956 45 SVILGFGAFFAVFTSFLVWLEKRYVGSRHTSEW 77 (722)
Q Consensus 45 ~vvi~~~~yfal~~~~~~~~~~r~~~~~~ssed 77 (722)
.=.++.+++++++.+++.|..++ +++++.||
T Consensus 10 ~~~~~~v~~~~~F~gi~~w~~~~--~~k~~~e~ 40 (49)
T PF05545_consen 10 ARSIGTVLFFVFFIGIVIWAYRP--RNKKRFEE 40 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc--cchhhHHH
Confidence 33445566666666677776543 22444444
No 123
>PF08570 DUF1761: Protein of unknown function (DUF1761); InterPro: IPR013879 This entry shows conserved fungal proteins with unknown function.
Probab=22.89 E-value=5.9e+02 Score=23.31 Aligned_cols=52 Identities=15% Similarity=0.165 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HhhhcCC-CCChhhHHhcCCCCChH-HHHHHHHHHHHhHHH
Q 004956 45 SVILGFGAFFAVFTSFLVWL----EKRYVGS-RHTSEWFNTAGRNVKTG-LIASVIVSQWTWAAT 103 (722)
Q Consensus 45 ~vvi~~~~yfal~~~~~~~~----~~r~~~~-~~ssedF~~AgRsv~~~-l~a~si~at~~sa~t 103 (722)
+++++....|++ ...|+ .|++.|. ..+.|| .|+-+.. ....+++++-.-+..
T Consensus 3 avlvaa~~~~~~---G~lWY~plFg~~W~~~~g~~~~~----~~~~~~~~~~~~~~~~~~v~a~~ 60 (126)
T PF08570_consen 3 AVLVAAIAAFVL---GFLWYGPLFGKAWMRAMGITPED----AKKGNPAKPFIISFLGSLVQAYF 60 (126)
T ss_pred HHHHHHHHHHHH---HHHHHhHHHHHHHHHHcCCCccc----ccCcchhhhHHHHHHHHHHHHHH
Confidence 455555555544 23344 3444443 445566 3333322 445555554443333
No 124
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=22.10 E-value=9.8e+02 Score=25.53 Aligned_cols=25 Identities=12% Similarity=0.254 Sum_probs=16.2
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHH
Q 004956 486 WRKANAIGAIAGTITGCLLGIITWL 510 (722)
Q Consensus 486 Wkr~n~~gAi~g~i~G~~~~i~~w~ 510 (722)
.||.+..+-+.+-+.|-..-+..|.
T Consensus 130 ~Kr~t~~~~~~~g~~~~~~~l~g~~ 154 (291)
T PRK12886 130 CKRFTALAHVVLGFCLALAPLGAWI 154 (291)
T ss_pred hhccccccHHHHHHHHHHHHHHHHH
Confidence 6999998877766665544344443
No 125
>KOG4491 consensus Predicted membrane protein [Function unknown]
Probab=21.71 E-value=81 Score=32.55 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=18.7
Q ss_pred hhccCCCchhhHHHHHHHHHHHHH
Q 004956 483 MLLWRKANAIGAIAGTITGCLLGI 506 (722)
Q Consensus 483 gl~Wkr~n~~gAi~g~i~G~~~~i 506 (722)
++-.|-.+.-|++.|+++|+++++
T Consensus 56 ~lkrkSld~SGa~~G~lV~filtI 79 (323)
T KOG4491|consen 56 GLKRKSLDHSGALGGLLVGFILTI 79 (323)
T ss_pred HHhhcccccccchhHHHHHHHHHH
Confidence 555556899999999999996543
No 126
>PF11151 DUF2929: Protein of unknown function (DUF2929); InterPro: IPR021324 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=21.40 E-value=2.8e+02 Score=22.20 Aligned_cols=28 Identities=7% Similarity=0.197 Sum_probs=20.4
Q ss_pred CchhhHHHHHHHHhHhHhhhheecccCC
Q 004956 528 NAPMLAGNLVSILTGGAVHAVCSLLWPQ 555 (722)
Q Consensus 528 ~~~~l~g~~vsl~~s~i~~vivSlltp~ 555 (722)
.++...+.+++..++.++.++...++++
T Consensus 28 ~~n~~~~~Ii~vi~~i~~~~~~~~i~~~ 55 (57)
T PF11151_consen 28 TYNFTTAAIIAVIFGIIVANIIAVIPKK 55 (57)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4445666777888888888888877655
No 127
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=20.69 E-value=1.1e+03 Score=25.48 Aligned_cols=31 Identities=13% Similarity=0.476 Sum_probs=21.0
Q ss_pred hhhhhccCCCchhhHHHHHHHHHHHHHHHHH
Q 004956 480 IAFMLLWRKANAIGAIAGTITGCLLGIITWL 510 (722)
Q Consensus 480 lllgl~Wkr~n~~gAi~g~i~G~~~~i~~w~ 510 (722)
++...+-||.+..+-+.+-+.|...-+..|.
T Consensus 132 ~~Yt~~lKr~t~~~~~vgg~~ga~p~l~G~~ 162 (306)
T PRK13362 132 GVYSLYLKRNSVYGTLVGSLSGAMPPVVGYC 162 (306)
T ss_pred HHHhHHHhccCcHhHHHHHHHHHHHHHHHHH
Confidence 3556667888888888777776654445554
Done!