Query 004956
Match_columns 722
No_of_seqs 348 out of 1888
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 10:58:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004956.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004956hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dh4_A Sodium/glucose cotransp 100.0 1.4E-63 4.7E-68 571.2 40.6 454 69-559 6-478 (530)
2 2xq2_A Sodium/glucose cotransp 100.0 3.4E-62 1.2E-66 566.7 43.7 482 40-558 9-506 (593)
3 2jln_A MHP1; hydantoin, transp 99.3 1.1E-08 3.8E-13 115.9 37.4 155 82-243 24-187 (501)
4 3l1l_A Arginine/agmatine antip 98.6 0.00037 1.3E-08 76.7 40.5 157 82-240 7-167 (445)
5 3gia_A Uncharacterized protein 98.5 0.0012 4.1E-08 72.6 39.0 158 82-240 5-167 (444)
6 4djk_A Probable glutamate/gamm 97.8 0.025 8.6E-07 63.2 32.7 143 82-229 10-161 (511)
7 4ain_A Glycine betaine transpo 96.7 0.059 2E-06 60.5 19.1 78 150-230 181-272 (539)
8 2wsw_A BCCT family betaine/car 95.9 0.88 3E-05 50.8 22.8 62 168-232 206-272 (509)
9 3rlb_A THIT; S-component, ECF 55.1 60 0.002 31.3 9.8 26 481-506 104-132 (192)
10 2jwa_A Receptor tyrosine-prote 20.3 1.3E+02 0.0046 21.8 4.2 20 47-67 18-37 (44)
No 1
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=100.00 E-value=1.4e-63 Score=571.20 Aligned_cols=454 Identities=18% Similarity=0.240 Sum_probs=351.7
Q ss_pred cCCCCChhhHHhcCCCCChHHHHHHHHHHHHhHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH-HHHHHHHhhcCCC
Q 004956 69 VGSRHTSEWFNTAGRNVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGPFWYASGATIQVLLFG-VMAIEIKRKASHA 147 (722)
Q Consensus 69 ~~~~~ssedF~~AgRsv~~~l~a~si~at~~sa~t~lg~~g~ay~~Gi~~~~w~~~G~~l~ill~~-~la~~lr~~~~~~ 147 (722)
+||++|+|||++|||++|+|++++|++|||+|+++++|.+|.+|++|+++. ++..+..++.++.+ ++.++.|| .+.
T Consensus 6 ~~~~~~~~dy~laGR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~-~~~~~~~~~~~i~~~~~~p~~~~--~~~ 82 (530)
T 3dh4_A 6 XXXXXXXXXXXXAGKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIA-SYEWMSAITLIIVGKYFLPIFIE--KGI 82 (530)
T ss_dssp HHHHHHHHHHHCCCSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGH-HHHHHHHHHHHHHHHHTHHHHHH--TTC
T ss_pred ccccccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHH-HHHHHHHHHHHHHHHHHHHHHHH--cCC
Confidence 456889999999999999999999999999999999999999999999863 44444444544433 34555554 589
Q ss_pred CCHHHHHHHhhCchhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhCChhHHHHHHHhHhhhHHhhccchHHHHHHHHH
Q 004956 148 HTVCEIVKARWGTAAHLVFLAFCFLTN-IIVTAMLLLGGSAVVNALTGVNIYAASFLIPLGVIVYTLAGGLKATFLASYI 226 (722)
Q Consensus 148 ~Ti~E~l~~Ryg~~~~~v~~~~~li~~-i~~~a~ql~g~a~vl~~l~Gi~~~~~~il~~~iv~iYT~~GGlrav~~TD~i 226 (722)
+|+||++++|||++.|.+.+++.++.+ ..+++.|+++++.+++.++|+|++.++++.++++++||.+||+||+++||.+
T Consensus 83 ~T~~e~l~~Rfg~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~Gi~~~~~i~i~~~i~~~Yt~~GGl~aV~~TD~i 162 (530)
T 3dh4_A 83 YTIPEFVEKRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILGIPLMYSILGLALFALVYSIYGGLSAVVWTDVI 162 (530)
T ss_dssp CSHHHHHHHHTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTC------CCSHHHH
T ss_pred ccHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 999999999999999988888776544 4568999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCChHHHHHHHH---HhhhhcccCCCCCCCCCCCCCCCCCCCCCcchhhhcchhhHHH
Q 004956 227 HSVIVHVVLVIFVYLVYTASSELGSPSVMYNRLV---EVASKSRICQEPVSHAGQSCGPVNGNYKGSFLTILSSGGLVFG 303 (722)
Q Consensus 227 Q~vi~li~~li~~~~v~~~~~~~GG~~~l~~~L~---~~~~~~~~~~~~~~~~~~~~~P~~~~~~gs~~t~~s~~glifg 303 (722)
|+++|+++.+++.+..+ .++||++++.+.+. +..++.. +...++.+++|.++..+ ..+++
T Consensus 163 Q~~im~~g~~~v~~~~~---~~~Gg~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~-~~~i~ 225 (530)
T 3dh4_A 163 QVFFLVLGGFMTTYMAV---SFIGGTDGWFAGVSKMVDAAPGHF-------------EMILDQSNPQYMNLPGI-AVLIG 225 (530)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHTTSCHHHHHHHHHHHCGGGG-------------CSSCCSSSSGGGGSCTT-HHHHS
T ss_pred HHHHHHHHHHHHHHHHH---HHcCChhhHHHHHHHHHhcCchhc-------------ccccCCCCccccccchH-HHHHH
Confidence 99999999888877654 34577665555443 3322211 11111111233332111 11111
Q ss_pred HHHHHHhhcccccCcceehhheeeCC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------------CCccc
Q 004956 304 IINIVGNFGTVFVDNGYWVSAIAARP-SSTHKGYLLGGLVWFAVPFSLATSLGLGALALDLP-------------LTETE 369 (722)
Q Consensus 304 ~~~il~~fg~~~~dq~~~QR~~aAk~-~~a~k~~~l~~~l~~~ip~~~~~~iGl~a~al~~~-------------l~~~~ 369 (722)
-.+ +.+++..++||+++||++++|| +++||+.++++++++.+|++. .++|+++++++++ ..++.
T Consensus 226 ~~~-~~~l~~~g~~q~i~qR~laaks~k~ar~~~~~~~~~~~~~~~~~-~~~Gl~a~~~~~~~~~~~~~~~~~~~~~~~~ 303 (530)
T 3dh4_A 226 GLW-VANLYYWGFNQYIIQRTLAAKSVSEAQKGIVFAAFLKLIVPFLV-VLPGIAAYVITSDPQLMASLGDIAATNLPSA 303 (530)
T ss_dssp THH-HHHHHHTTTTCHHHHHHHSSSCHHHHHHHHHHHHHHHHHGGGTT-HHHHHHHHHHHHCHHHHHHHCTTCCSCCCCS
T ss_pred HHH-HHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcccccchhhcccccccCCCC
Confidence 111 1233344579999999999998 578999999998887766544 4689999887621 00223
Q ss_pred cCCCCchHHHHHHhhhhHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhcCCCCCcchhhHhhhHHHHHHHHHHH
Q 004956 370 ASHGLVPPATAIALMGKGGSILLLTMLFMAVTSAGSSELIAVSSLCTYDIYRTYINPDASGEKILKVSRAVILGFGCFMG 449 (722)
Q Consensus 370 ~~~~~v~p~~~~~llp~~l~gl~l~~i~aA~~ST~ss~l~a~Ssi~t~DIy~~~i~p~as~k~ll~vsRi~vvv~~i~~~ 449 (722)
.++|+++|.++. ++|+++.|++++++++|+|||+||.+|+.||++++|+||+++||+++|||+++++|+.++++++++.
T Consensus 304 ~~~d~~~p~l~~-~lp~~l~Gl~~a~llAA~mST~ss~l~s~st~~~~Diy~~~~~~~~s~~~~~~v~R~~~v~~~i~a~ 382 (530)
T 3dh4_A 304 ANADKAYPWLTQ-FLPVGVKGVVFAALAAAIVSSLASMLNSTATIFTMDIYKEYISPDSGDHKLVNVGRTAAVVALIIAC 382 (530)
T ss_dssp SSGGGHHHHHHT-TCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCSCSCSSHHHHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHH-HcchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 478999999986 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccccHHHHHHHHHHHHHhhhHHHhhhhhccCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCCCCCCc
Q 004956 450 FLAVILNKAGVSLGWMYLAMGVLIGSAVLPIAFMLLWRKANAIGAIAGTITGCLLGIITWLSVTAIEYGRINLDTTGRNA 529 (722)
Q Consensus 450 ~~a~~~~~~~i~l~~l~~~~g~~~~~~~~plllgl~Wkr~n~~gAi~g~i~G~~~~i~~w~~~~~~~~G~i~~~~~~~~~ 529 (722)
.++..++..+..++++....+.+.+++++|+++++||||+|++||++|+++|+++++..+.. ....
T Consensus 383 ~~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~llgl~wkr~~~~gA~~g~i~G~~~~~~~~~~--------------~~~~ 448 (530)
T 3dh4_A 383 LIAPMLGGIGQAFQYIQEYTGLVSPGILAVFLLGLFWKKTTSKGAIIGVVASIPFALFLKFM--------------PLSM 448 (530)
T ss_dssp HHGGGGGGCSCHHHHHHHHHTTTHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHTS--------------SSCC
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH--------------cCCc
Confidence 99976655544467777677777788899999999999999999999999999876543321 1134
Q ss_pred hhhHHHHHHHHhHhHhhhheecccCCCCCh
Q 004956 530 PMLAGNLVSILTGGAVHAVCSLLWPQNYDW 559 (722)
Q Consensus 530 ~~l~g~~vsl~~s~i~~vivSlltp~~~d~ 559 (722)
|.++..++++++|.++++++|+++|++.|+
T Consensus 449 ~~~~~~~~~~~~~~i~~v~vSl~t~~~~~~ 478 (530)
T 3dh4_A 449 PFMDQMLYTLLFTMVVIAFTSLSTSINDDD 478 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTCSSSSC
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Confidence 567778889999999999999999987653
No 2
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=100.00 E-value=3.4e-62 Score=566.74 Aligned_cols=482 Identities=18% Similarity=0.261 Sum_probs=355.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhHHhcCCCCChHHHHHHHHHHHHhHHHHHHHHHHHHHhCChHH
Q 004956 40 QGVGYSVILGFGAFFAVFTSFLVWLEKRYVGSRHTSEWFNTAGRNVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGP 119 (722)
Q Consensus 40 ~~~gy~vvi~~~~yfal~~~~~~~~~~r~~~~~~ssedF~~AgRsv~~~l~a~si~at~~sa~t~lg~~g~ay~~Gi~~~ 119 (722)
+..||.++ ++|+++++.++.|..||.+++++|+|||++|||+++++++++|++|||+|+++++|.+|.+|++|+++
T Consensus 9 ~~~d~~i~---~~yl~~~~~ig~~~~r~~~~~~~~~~dy~laGR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~- 84 (593)
T 2xq2_A 9 SFIDIMVF---AIYVAIIIGVGLWVSRDKKGTQKSTEDYFLAGKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAI- 84 (593)
T ss_dssp CHHHHHHH---HHHHHHHHHHHHTCC-------------------CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGG-
T ss_pred cHHHHHHH---HHHHHHHHHHHHHHHhcccCCCCCHHHHhcCCCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHH-
Confidence 34566555 78999888888776665333356899999999999999999999999999999999999999999986
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHhhcCCCCCHHHHHHHhhCchhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhCChh
Q 004956 120 FWYASGATIQVLLFG-VMAIEIKRKASHAHTVCEIVKARWGTAAHLVFLAFCFLT-NIIVTAMLLLGGSAVVNALTGVNI 197 (722)
Q Consensus 120 ~w~~~G~~l~ill~~-~la~~lr~~~~~~~Ti~E~l~~Ryg~~~~~v~~~~~li~-~i~~~a~ql~g~a~vl~~l~Gi~~ 197 (722)
.||..+..++.++.+ ++.++.|| .+.+|++|++++|||++.|.+.+++.++. .+.+++.|+++++.+++.++|+|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~p~~~r--~~~~T~~e~l~~Rfg~~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~Gi~~ 162 (593)
T 2xq2_A 85 ASYEWMSAITLIIVGKYFLPIFIE--KGIYTIPEFVEKRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILGIPL 162 (593)
T ss_dssp GHHHHHHHHHHHHHHHTHHHHHHH--TTCCSHHHHHHHHTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--CCCCCcHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccH
Confidence 345555444544433 44555554 58999999999999999998888777654 456789999999999999999999
Q ss_pred HHHHHHHhHhhhHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCChHHHHHHHHHhhhhcccCCCCCCCCC
Q 004956 198 YAASFLIPLGVIVYTLAGGLKATFLASYIHSVIVHVVLVIFVYLVYTASSELGSPSVMYNRLVEVASKSRICQEPVSHAG 277 (722)
Q Consensus 198 ~~~~il~~~iv~iYT~~GGlrav~~TD~iQ~vi~li~~li~~~~v~~~~~~~GG~~~l~~~L~~~~~~~~~~~~~~~~~~ 277 (722)
+.++++.++++++||..||+||+++||++|+++|+++.+++.+.++ .+.||++++.+.+.+..++..+. +
T Consensus 163 ~~~i~i~~~i~~~Yt~~GGl~av~~TD~iQ~iiml~~~l~v~~~~l---~~~gg~~~~~~~~~~~~~~~~~~---~---- 232 (593)
T 2xq2_A 163 MYSILGLALFALVYSIYGGLSAVVWTDVIQVFFLVLGGFMTTYMAV---SFIGGTDGWFAGVSKMVDAAPGH---F---- 232 (593)
T ss_dssp HHHHHHHHHHHHHHHHTTC---CCHHHHHHHHHHHHHHHHHHHHHH---HHHHGGGHHHHHHHHHHHHCGGG---S----
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH---HHcCCchhHHHHHHHHHhhChhh---c----
Confidence 9999999999999999999999999999999999999988877655 34688777766543322110000 0
Q ss_pred CCCCCCCCCCCCcchhhhcchhhHHHHHHHHHhhcccccCcceehhheeeCC-hhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004956 278 QSCGPVNGNYKGSFLTILSSGGLVFGIINIVGNFGTVFVDNGYWVSAIAARP-SSTHKGYLLGGLVWFAVPFSLATSLGL 356 (722)
Q Consensus 278 ~~~~P~~~~~~gs~~t~~s~~glifg~~~il~~fg~~~~dq~~~QR~~aAk~-~~a~k~~~l~~~l~~~ip~~~~~~iGl 356 (722)
....| .++ +.|.+. ++...+++..+ +.+++.++.||+++||++++|| +++||+.+++++.++.+++.. ..+|+
T Consensus 233 ~~~~~-~~~--~~~~~~-~~~~~~~g~~~-~~~~~~~~~~q~~~qR~laaks~k~ar~~~~~~~~~~~~~~~~~-~~~Gl 306 (593)
T 2xq2_A 233 EMILD-QSN--PQYMNL-PGIAVLIGGLW-VANLYYWGFNQYIIQRTLAAKSVSEAQKGIVFAAFLALIVPFLV-VLPGI 306 (593)
T ss_dssp CSSCC-SSS--GGGGTS-CTTHHHHSTHH-HHHHHHHTTTCSHHHHHHTTSCHHHHHHHHHHHHHHTTTHHHHH-THHHH
T ss_pred ccccC-CCC--cccccc-hHHHHHHHHHH-HHHHHhhcCChHHHHHhheeCCHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 00011 111 112111 11122222111 1122233579999999999998 678999999998877666543 46899
Q ss_pred HHHHhcCCC-------------CccccCCCCchHHHHHHhhhhHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhh
Q 004956 357 GALALDLPL-------------TETEASHGLVPPATAIALMGKGGSILLLTMLFMAVTSAGSSELIAVSSLCTYDIYRTY 423 (722)
Q Consensus 357 ~a~al~~~l-------------~~~~~~~~~v~p~~~~~llp~~l~gl~l~~i~aA~~ST~ss~l~a~Ssi~t~DIy~~~ 423 (722)
+++++..+- .++..++|+++|.++ +.+|+++.|++++++++|+|||+||.+++.|+++++|+|+++
T Consensus 307 ~a~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~p~l~-~~lp~~l~gl~~a~llaA~mST~~s~l~a~st~~~~Diy~~~ 385 (593)
T 2xq2_A 307 AAYVITSDPQLMASLGDIAATNLPSAANADKAYPWLT-QFLPVGVKGVVFAALAAAIVSSLASMLNSTATIFTMDIYKEY 385 (593)
T ss_dssp HHHHHHTCHHHHHHHC-----CCCCSTBGGGHHHHHH-HTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHhcccccccccccccccCCCCCChhhHHHHHH-HHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 988872100 012236899999999 999999999999999999999999999999999999999999
Q ss_pred cCCCCCcchhhHhhhHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHhhhHHHhhhhhccCCCchhhHHHHHHHHHH
Q 004956 424 INPDASGEKILKVSRAVILGFGCFMGFLAVILNKAGVSLGWMYLAMGVLIGSAVLPIAFMLLWRKANAIGAIAGTITGCL 503 (722)
Q Consensus 424 i~p~as~k~ll~vsRi~vvv~~i~~~~~a~~~~~~~i~l~~l~~~~g~~~~~~~~plllgl~Wkr~n~~gAi~g~i~G~~ 503 (722)
+||+++|||+++++|+.++++++++..++...+..+..++++....+...+++++|+++|+||||.|++||++|+++|++
T Consensus 386 ~~~~~s~~~~l~v~Ri~~v~~~~ia~~~a~~~~~~~~i~~~~~~~~g~~~~~~~~~~llglfwkr~~~~gA~~g~i~G~~ 465 (593)
T 2xq2_A 386 ISPDSGDHKLVNVGRTAAVVALIIAALIAPMLGGIGQCFQYIQEYTGLVSPGILAVFLLGLFWKKTTSKGAIIGVVASIP 465 (593)
T ss_dssp TCSCCCHHHHHHHHHHHHHHHHHHHHHHGGGGGGCBCHHHHHHHHHTTTHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999765544444677777777778899999999999999999999999999997
Q ss_pred HHHHHHHHhhhhcccccccCCCCCCchhhHHHHHHHHhHhHhhhheecccCCCCC
Q 004956 504 LGIITWLSVTAIEYGRINLDTTGRNAPMLAGNLVSILTGGAVHAVCSLLWPQNYD 558 (722)
Q Consensus 504 ~~i~~w~~~~~~~~G~i~~~~~~~~~~~l~g~~vsl~~s~i~~vivSlltp~~~d 558 (722)
+++..+.. .+..|.++...+++.+|.++++++|+++|++.|
T Consensus 466 ~~~~~~~~--------------~~~~~~~~~~~~~~~~~~iv~v~vSl~t~~~~~ 506 (593)
T 2xq2_A 466 FALFLKFM--------------PLSMPFMDQMLYTLLFTMVVIAFTSLSTSINDD 506 (593)
T ss_dssp HHHHHHHS--------------SCCCCHHHHHHHHHHHHHHHHHHHHHHHCSSSS
T ss_pred HHHHHHHH--------------cCCccHHHHHHHHHHHHHHHHHhheeecCCCch
Confidence 65443211 012346777888999999999999999988765
No 3
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=99.28 E-value=1.1e-08 Score=115.95 Aligned_cols=155 Identities=11% Similarity=0.056 Sum_probs=105.0
Q ss_pred CCCCChHHHHHHHHHHHHhHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH----HHHHHHHHhhcCCCCCHHHHHHHh
Q 004956 82 GRNVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGPFWYASGATIQVLLF----GVMAIEIKRKASHAHTVCEIVKAR 157 (722)
Q Consensus 82 gRsv~~~l~a~si~at~~sa~t~lg~~g~ay~~Gi~~~~w~~~G~~l~ill~----~~la~~lr~~~~~~~Ti~E~l~~R 157 (722)
.|+.+++-...--++...+..++.-.+. ... |++. .+..++..++.++. .+.+.. -.| . ..+.+++.|.+
T Consensus 24 ~R~~~~~~~~~~W~g~~~~i~~~~~Ga~-~~~-GLs~-~~a~lai~lG~li~~~~~~l~~~~-G~~-~-Gl~~~v~~R~~ 97 (501)
T 2jln_A 24 ERSVGPFSLAAIWFAMAIQVAIFIAAGQ-MTS-SFQV-WQVIVAIAAGCTIAVILLFFTQSA-AIR-W-GINFTVAARMP 97 (501)
T ss_dssp GCCBCHHHHHHHHHHHHCSTHHHHHHHH-HTT-TSCH-HHHHHHHHHHHHHHHHHHHHHTHH-HHH-H-CCCHHHHTTTT
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHH-Hhc-CcCH-HHHHHHHHHHHHHHHHHHHHHhHH-Hhh-c-CCChhhhhHhh
Confidence 5777777665555555554445422222 223 8874 33333334444332 222222 222 2 35589999999
Q ss_pred hCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----CCh-hHHHHHHHhHhhhHHhhccchHHHHHHHHHHHHHHH
Q 004956 158 WGTAAHLVFLAFCFLTNIIVTAMLLLGGSAVVNALT----GVN-IYAASFLIPLGVIVYTLAGGLKATFLASYIHSVIVH 232 (722)
Q Consensus 158 yg~~~~~v~~~~~li~~i~~~a~ql~g~a~vl~~l~----Gi~-~~~~~il~~~iv~iYT~~GGlrav~~TD~iQ~vi~l 232 (722)
||.+...+.+++..+..+.+.+.|...++..++.++ |.+ .+.+++++.++.+ .+.+.|+|++.+.+.++..+++
T Consensus 98 FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g~~~~~v~~~i~~~l~~-~~~~~G~~~i~~~~~~~~p~~~ 176 (501)
T 2jln_A 98 FGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTGFTNLPLWIVIFGAIQV-VTTFYGITFIRWMNVFASPVLL 176 (501)
T ss_dssp SCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HHHTTHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHH-HHHHhCHHHHHHHHHHHHHHHH
Confidence 999988888888888899999999999999888775 877 4666666666554 5558899999999999999998
Q ss_pred HHHHHHHHHHH
Q 004956 233 VVLVIFVYLVY 243 (722)
Q Consensus 233 i~~li~~~~v~ 243 (722)
++++.+.+..+
T Consensus 177 i~~i~~~~~~l 187 (501)
T 2jln_A 177 AMGVYMVYLML 187 (501)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88877766544
No 4
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=98.63 E-value=0.00037 Score=76.73 Aligned_cols=157 Identities=10% Similarity=0.050 Sum_probs=99.5
Q ss_pred CCCCChHHHHHHHHHHHHhHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhhCch
Q 004956 82 GRNVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGPFWYASGATIQVLLFGVMAIEIKRKASHAHTVCEIVKARWGTA 161 (722)
Q Consensus 82 gRsv~~~l~a~si~at~~sa~t~lg~~g~ay~~Gi~~~~w~~~G~~l~ill~~~la~~lr~~~~~~~Ti~E~l~~Ryg~~ 161 (722)
.|+++.+-..+-.+++.+++.-+... +...+.|..+.+.+.++. +..++.++...++-++.|+.-...++.++.+|+.
T Consensus 7 ~r~l~~~~~~~l~ig~~iG~Gif~~~-~~~~~~G~~~~~~~li~~-~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~~ 84 (445)
T 3l1l_A 7 AHKVGLIPVTLMVSGAIMGSGVFLLP-ANLASTGGIAIYGWLVTI-IGALGLSMVYAKMSFLDPSPGGSYAYARRCFGPF 84 (445)
T ss_dssp CCCBCHHHHHHHHHHHHCSSHHHHHH-HHHHHHCTHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCTTTHHHHHHHHSCHH
T ss_pred CCcccHHHHHHHHHHhHHhhhHHhhH-HHHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHccCCCCCCchhhHHhHcCCh
Confidence 47888888877778887777766654 444566866422233332 2233344444566566688889999999999998
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-h---hHHHHHHHhHhhhHHhhccchHHHHHHHHHHHHHHHHHHHH
Q 004956 162 AHLVFLAFCFLTNIIVTAMLLLGGSAVVNALTGV-N---IYAASFLIPLGVIVYTLAGGLKATFLASYIHSVIVHVVLVI 237 (722)
Q Consensus 162 ~~~v~~~~~li~~i~~~a~ql~g~a~vl~~l~Gi-~---~~~~~il~~~iv~iYT~~GGlrav~~TD~iQ~vi~li~~li 237 (722)
...+......+......+.+..+.+..++...+. + ......+..+.+..+....|.|.......+-++++++.+++
T Consensus 85 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~ 164 (445)
T 3l1l_A 85 LGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVG 164 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGGSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccccccHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH
Confidence 8877777777766666666666767666655441 1 11222333344556677788888877777666666555444
Q ss_pred HHH
Q 004956 238 FVY 240 (722)
Q Consensus 238 ~~~ 240 (722)
+.+
T Consensus 165 ~~i 167 (445)
T 3l1l_A 165 IAV 167 (445)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 5
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=98.47 E-value=0.0012 Score=72.60 Aligned_cols=158 Identities=13% Similarity=0.070 Sum_probs=95.4
Q ss_pred CCCCChHHHHHHHHHHHHhHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhhCch
Q 004956 82 GRNVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGPFWYASGATIQVLLFGVMAIEIKRKASHAHTVCEIVKARWGTA 161 (722)
Q Consensus 82 gRsv~~~l~a~si~at~~sa~t~lg~~g~ay~~Gi~~~~w~~~G~~l~ill~~~la~~lr~~~~~~~Ti~E~l~~Ryg~~ 161 (722)
.|+++.+-..+-.+++-.++.-+..........|.+..+.+.++..+ ..+..+...++-++.|+.-...++.++.+|++
T Consensus 5 ~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~~~~~~~li~~~~-~~~~~~~~~el~~~~P~~Gg~y~~~~~~~G~~ 83 (444)
T 3gia_A 5 NKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGRNLPETFILSGIY-ALLVAYSYTKLGAKIVSNAGPIAFIHKAIGDN 83 (444)
T ss_dssp CCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGGGHHHHHHHHHHH-HHHHHHHHHHHHTTCCCTTTHHHHHHHHHCSS
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH-HHHHHHHHHHHHhhCCCCCcHHHhHHHHhCcc
Confidence 57788877776666666666655444444444566543333333332 22334444566666688888999999999986
Q ss_pred h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChh--HH--HHHHHhHhhhHHhhccchHHHHHHHHHHHHHHHHHHH
Q 004956 162 A-HLVFLAFCFLTNIIVTAMLLLGGSAVVNALTGVNI--YA--ASFLIPLGVIVYTLAGGLKATFLASYIHSVIVHVVLV 236 (722)
Q Consensus 162 ~-~~v~~~~~li~~i~~~a~ql~g~a~vl~~l~Gi~~--~~--~~il~~~iv~iYT~~GGlrav~~TD~iQ~vi~li~~l 236 (722)
. .........+......+.+..+.+..++.+.+.+. +. .+.+..+++..+....|.|.......+-+.++++.++
T Consensus 84 ~~~g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~ 163 (444)
T 3gia_A 84 IITGALSILLWMSYVISIALFAKGFAGYFLPLINAPINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILG 163 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3 11223444455566677777788887887776432 22 2223344445566777888877777776666666555
Q ss_pred HHHH
Q 004956 237 IFVY 240 (722)
Q Consensus 237 i~~~ 240 (722)
.+.+
T Consensus 164 ~~ii 167 (444)
T 3gia_A 164 LFIF 167 (444)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 6
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=97.81 E-value=0.025 Score=63.19 Aligned_cols=143 Identities=17% Similarity=0.094 Sum_probs=78.7
Q ss_pred CCCCChHHHHHHHHHHHHhHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHh--hcCCCCCHHHHHHHhhC
Q 004956 82 GRNVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGPFWYASGATIQVLLFGVMAIEIKR--KASHAHTVCEIVKARWG 159 (722)
Q Consensus 82 gRsv~~~l~a~si~at~~sa~t~lg~~g~ay~~Gi~~~~w~~~G~~l~ill~~~la~~lr~--~~~~~~Ti~E~l~~Ryg 159 (722)
.|+++.+-..+-.+++-.+ +.+.++ ....|.+...|+.++..+..+..++...++-+ +.| .-....+.++-+|
T Consensus 10 ~r~l~~~~~~~l~~~~~ig---~~~~~~-~~~~G~~~~~~~~i~~~~~~l~~al~~ael~s~~~~P-~GG~y~~~~~~~g 84 (511)
T 4djk_A 10 AKQLTLLGFFAITASMVMA---VYEYPT-FATSGFSLVFFLLLGGILWFIPVGLCAAEMATVDGWE-EGGVFAWVSNTLG 84 (511)
T ss_dssp --CCCHHHHHHHTGGGGCC---GGGHHH-HHTTTTHHHHHHHHHHHHTHHHHHHHHHHHHTTSCC----CHHHHHHHHHC
T ss_pred CccccHHHHHHHHHHHHHh---hchhHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCC-CCChhhhHHhhcC
Confidence 3677776655444444433 233333 34567665445444433332324444566666 678 8899999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC---Ch--h--HHHHHHHhHhhhHHhhccchHHHHHHHHHHHH
Q 004956 160 TAAHLVFLAFCFLTNIIVTAMLLLGGSAVVNALTG---VN--I--YAASFLIPLGVIVYTLAGGLKATFLASYIHSV 229 (722)
Q Consensus 160 ~~~~~v~~~~~li~~i~~~a~ql~g~a~vl~~l~G---i~--~--~~~~il~~~iv~iYT~~GGlrav~~TD~iQ~v 229 (722)
++...+......+.++...+....+.+..++.+.+ .+ . ...+.+..+.+....-+-|.|.......+=++
T Consensus 85 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~ 161 (511)
T 4djk_A 85 PRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILKWPALNEDPITKTIAALIILWALALTQFGGTKYTARIAKVGFF 161 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTTCGGGTSCSSHHHHHHHHHHHHHHHHHHTCSSSHHHHTHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCcHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 98887777777777766666666666666666531 22 1 12222233333445556677766555544433
No 7
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=96.71 E-value=0.059 Score=60.51 Aligned_cols=78 Identities=12% Similarity=0.118 Sum_probs=41.4
Q ss_pred HHHHHHHh--hCchhhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCh-----hHHHHHHHhHhhhHHhhccc
Q 004956 150 VCEIVKAR--WGTAAHLV------FLAFCFLTNIIVTAMLLLGGSAVVNALTGVN-----IYAASFLIPLGVIVYTLAGG 216 (722)
Q Consensus 150 i~E~l~~R--yg~~~~~v------~~~~~li~~i~~~a~ql~g~a~vl~~l~Gi~-----~~~~~il~~~iv~iYT~~GG 216 (722)
..-++++| +|...|.+ ..++.+.+.+...+.|+-+ -++.++|++ ....++++..++...+..-|
T Consensus 181 l~PllG~r~~~G~~G~~IDilav~atv~GvatSLGlg~~Qi~~---Gl~~lfGi~~~~~~~qi~ii~vit~i~~~Sa~sG 257 (539)
T 4ain_A 181 FVPLIGEKGAEGWLGKLIDILAIIATVFGTACSLGLGALQIGA---GLSAANIIEDPSDWTIVGIVSVLTLAFIFSAISG 257 (539)
T ss_dssp GHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHC--CCCSTTTTTHHHHHHHHHHHHHHHC-
T ss_pred hHhhcCCCccCCcchhhhHHHHHHHHHHHHhhhHHHHHHHHHH---HHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHh
Confidence 44577777 56544432 2344455556666677644 356788876 22344444444445566777
Q ss_pred h-HHHHHHHHHHHHH
Q 004956 217 L-KATFLASYIHSVI 230 (722)
Q Consensus 217 l-rav~~TD~iQ~vi 230 (722)
+ |++-+-.-+...+
T Consensus 258 l~kGIk~LS~~N~~L 272 (539)
T 4ain_A 258 VGKGIQYLSNANMVL 272 (539)
T ss_dssp --CCHHHHGGGHCCC
T ss_pred HHHHHHHHHHHHHHH
Confidence 7 7777766665433
No 8
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=95.93 E-value=0.88 Score=50.81 Aligned_cols=62 Identities=18% Similarity=0.220 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCChh--HHHHHHHhHhhh--HHhhccch-HHHHHHHHHHHHHHH
Q 004956 168 AFCFLTNIIVTAMLLLGGSAVVNALTGVNI--YAASFLIPLGVI--VYTLAGGL-KATFLASYIHSVIVH 232 (722)
Q Consensus 168 ~~~li~~i~~~a~ql~g~a~vl~~l~Gi~~--~~~~il~~~iv~--iYT~~GGl-rav~~TD~iQ~vi~l 232 (722)
++.+.+.+...+.|+-+ -++.++|++. ..-+.++.++++ .++..-|+ |++-+-.-+...+.+
T Consensus 206 ~~G~atsLGlg~~qi~~---Gl~~lfGi~~~~~~qi~ii~vit~~~~~Sa~sGl~kGIk~LS~~N~~la~ 272 (509)
T 2wsw_A 206 ILAMGTSLGLATPLVTE---CIQYLFGIPHTLQLDAIIISCWILLNAICVAFGLQKGVKIASDVRTYLSF 272 (509)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33444555555666644 3677888762 222333344444 45667788 888666656555443
No 9
>3rlb_A THIT; S-component, ECF transporter, ABC transporter, substrate-BIN domain, membrane, thiamine-binding protein; HET: BNG VIB; 2.00A {Lactococcus lactis subsp}
Probab=55.14 E-value=60 Score=31.29 Aligned_cols=26 Identities=23% Similarity=0.248 Sum_probs=17.5
Q ss_pred hhhhccCCCch---hhHHHHHHHHHHHHH
Q 004956 481 AFMLLWRKANA---IGAIAGTITGCLLGI 506 (722)
Q Consensus 481 llgl~Wkr~n~---~gAi~g~i~G~~~~i 506 (722)
+.|+++||-++ .+++.|.++|.+.-.
T Consensus 104 laG~f~~~~~~~~~~~~~lg~~ig~~~r~ 132 (192)
T 3rlb_A 104 IAGLFRQKTAPLKLAPVLLGTFVAVLLKY 132 (192)
T ss_dssp GGGGGCCCSSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHhheeccccccHHHHHHHHHHHHHHHH
Confidence 44888887432 567888888876544
No 10
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=20.32 E-value=1.3e+02 Score=21.79 Aligned_cols=20 Identities=20% Similarity=0.218 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 004956 47 ILGFGAFFAVFTSFLVWLEKR 67 (722)
Q Consensus 47 vi~~~~yfal~~~~~~~~~~r 67 (722)
++|+.+.+.+...+..| .||
T Consensus 18 vVGvll~vi~~l~~~~~-~RR 37 (44)
T 2jwa_A 18 VVGILLVVVLGVVFGIL-IKR 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHhh-eeh
Confidence 44444444444444445 444
Done!