Query 004956
Match_columns 722
No_of_seqs 348 out of 1888
Neff 7.1
Searched_HMMs 13730
Date Mon Mar 25 10:58:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004956.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/004956hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pvza_ g.3.7.2 (A:) K+ toxin- 13.3 24 0.0017 21.5 0.4 13 6-18 16-28 (31)
2 d2choa2 c.1.8.10 (A:127-436) G 11.7 47 0.0034 32.0 2.4 61 646-710 17-77 (310)
3 d2cbia2 c.1.8.10 (A:179-495) H 8.2 81 0.0059 30.3 2.6 60 646-710 17-76 (317)
4 d1mjea2 a.171.1.1 (A:2752-2887 6.4 62 0.0045 22.1 0.4 15 694-708 19-33 (49)
5 d1j2za_ b.81.1.1 (A:) UDP N-ac 5.7 98 0.0071 28.3 1.7 46 665-710 202-247 (259)
6 d1fftb2 f.17.2.1 (B:27-117) Cy 5.7 71 0.0051 24.7 0.5 19 54-72 29-47 (91)
7 d1rh5b_ f.23.28.1 (B:) Preprot 5.6 2.1E+02 0.015 20.1 2.9 17 428-444 18-34 (56)
8 d2ciwa2 a.39.3.1 (A:120-298) C 4.9 1.4E+02 0.01 24.2 1.8 24 688-711 29-52 (179)
9 d1kqfb2 f.23.22.1 (B:246-290) 4.8 2.3E+02 0.017 18.9 2.6 26 485-510 7-32 (45)
10 d1uptb_ a.193.1.1 (B:) Golgi a 4.6 2.3E+02 0.017 19.8 2.6 22 684-705 35-56 (58)
No 1
>d1pvza_ g.3.7.2 (A:) K+ toxin-like peptide Bmp07 (BmKK2) {Chinese scorpion (Buthus martensi karsch) [TaxId: 34649]}
Probab=13.26 E-value=24 Score=21.49 Aligned_cols=13 Identities=23% Similarity=0.409 Sum_probs=10.9
Q ss_pred CCCCCCCCCcccc
Q 004956 6 QCPPFGFSRKYYH 18 (722)
Q Consensus 6 ~~~~~~~~~~~~~ 18 (722)
.||+||+..|-|.
T Consensus 16 kcpgnp~cr~gfc 28 (31)
T d1pvza_ 16 KCPGNPPCRNGFC 28 (31)
T ss_dssp HSSSCCCEETTEE
T ss_pred cCCCCCcccCcce
Confidence 4999999988775
No 2
>d2choa2 c.1.8.10 (A:127-436) Glucosaminidase GH84, catalytic domain {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=11.70 E-value=47 Score=31.99 Aligned_cols=61 Identities=13% Similarity=0.070 Sum_probs=47.2
Q ss_pred ccchHHHHHHHhhccccchhhhhhHHhhhhhhhhhhcCchhhhHhHHHHHHhhhHHHhhcccccc
Q 004956 646 IESWETIKSVCVGMFTNDLLMERVEEINIKLQTIMLAIPEAENMYLLEKEKAKNKEAQRNKLDFA 710 (722)
Q Consensus 646 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (722)
||.|..+.+-+.....|-++...-|+.-|+...|.+.-|+.+ +++=|+..+++..|+.+|-
T Consensus 17 ~~~R~~l~~~l~~~~mn~Y~YaPKdD~~hR~~~Wr~~yp~~~----~~~~~~l~~~a~~~~i~f~ 77 (310)
T d2choa2 17 HQARLSQLKFYGKNKMNTYIYGPKDDPYHSAPNWRLPYPDKE----AAQLQELVAVANENEVDFV 77 (310)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECCTTCTTTSTTGGGSCCCHHH----HHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHcCCcEEEEccCCChhhChhhhcccCCHHH----HHHHHHHHHHHHHcCCeEE
Confidence 688999988888776777888888888888766887777554 3445667788889999986
No 3
>d2cbia2 c.1.8.10 (A:179-495) Hyaluronidase catalytic domain {Clostridium perfringens [TaxId: 1502]}
Probab=8.17 E-value=81 Score=30.32 Aligned_cols=60 Identities=13% Similarity=0.097 Sum_probs=44.7
Q ss_pred ccchHHHHHHHhhccccchhhhhhHHhhhhhhhhhhcCchhhhHhHHHHHHhhhHHHhhcccccc
Q 004956 646 IESWETIKSVCVGMFTNDLLMERVEEINIKLQTIMLAIPEAENMYLLEKEKAKNKEAQRNKLDFA 710 (722)
Q Consensus 646 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (722)
||.|..+.+-++....|-++...=|+..|+. .|.+.-|+.+ +++=|+.-+++.+||.+|.
T Consensus 17 ~e~R~~l~~~l~~~~mn~YiYAPKdD~~hR~-~Wr~~Yp~~~----l~~~~~l~~~a~~~~v~fv 76 (317)
T d2cbia2 17 HQDRLDQIKFYGENKLNTYIYAPKDDPYHRE-KWREPYPESE----MQRMQELINASAENKVDFV 76 (317)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECCTTCGGGTT-TTTSCCCGGG----HHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHcCCcEEEEecCCCHHHHH-HhCccCCHHH----HHHHHHHHHHHHHcCCeEE
Confidence 7889999888887666777777777777775 5766666554 3556777888888999885
No 4
>d1mjea2 a.171.1.1 (A:2752-2887) BRCA2 tower domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.38 E-value=62 Score=22.05 Aligned_cols=15 Identities=47% Similarity=0.563 Sum_probs=7.9
Q ss_pred HHHhhhHHHhhcccc
Q 004956 694 KEKAKNKEAQRNKLD 708 (722)
Q Consensus 694 ~~~~~~~~~~~~~~~ 708 (722)
||..|-.|+|++||+
T Consensus 19 kEA~k~a~~qqKklE 33 (49)
T d1mjea2 19 KEALRFAEAQQKKLE 33 (49)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444445555555554
No 5
>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]}
Probab=5.73 E-value=98 Score=28.28 Aligned_cols=46 Identities=17% Similarity=0.179 Sum_probs=24.2
Q ss_pred hhhhhHHhhhhhhhhhhcCchhhhHhHHHHHHhhhHHHhhcccccc
Q 004956 665 LMERVEEINIKLQTIMLAIPEAENMYLLEKEKAKNKEAQRNKLDFA 710 (722)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (722)
..++++++..+.+.+.+...+-++.-..++++..+.++.+.-+||-
T Consensus 202 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fi 247 (259)
T d1j2za_ 202 ESKDIDFIYALYKRLFRPIPSLRESAKLELEEHANNPFVKEICSFI 247 (259)
T ss_dssp CHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 3456777777777776555443333322233333445555566764
No 6
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=5.68 E-value=71 Score=24.68 Aligned_cols=19 Identities=16% Similarity=0.043 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHhhhcCCC
Q 004956 54 FAVFTSFLVWLEKRYVGSR 72 (722)
Q Consensus 54 fal~~~~~~~~~~r~~~~~ 72 (722)
|.++.....|...||++++
T Consensus 29 ~v~V~~~~~~~~~ryR~~~ 47 (91)
T d1fftb2 29 VIPAILMAVGFAWKYRASN 47 (91)
T ss_dssp TTHHHHHHHTTTTTTTTST
T ss_pred HHHHHHHHHhhheeeeccC
Confidence 4444555667777776543
No 7
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=5.59 E-value=2.1e+02 Score=20.09 Aligned_cols=17 Identities=24% Similarity=0.503 Sum_probs=8.1
Q ss_pred CCcchhhHhhhHHHHHH
Q 004956 428 ASGEKILKVSRAVILGF 444 (722)
Q Consensus 428 as~k~ll~vsRi~vvv~ 444 (722)
.+.++..++++++.+.+
T Consensus 18 P~~~Ef~~ia~v~~iG~ 34 (56)
T d1rh5b_ 18 PTKDEYLAVAKVTALGI 34 (56)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 34455555555444433
No 8
>d2ciwa2 a.39.3.1 (A:120-298) Cloroperoxidase {Fungus (Caldariomyces fumago) [TaxId: 5474]}
Probab=4.95 E-value=1.4e+02 Score=24.20 Aligned_cols=24 Identities=29% Similarity=0.304 Sum_probs=20.0
Q ss_pred hHhHHHHHHhhhHHHhhccccccC
Q 004956 688 NMYLLEKEKAKNKEAQRNKLDFAS 711 (722)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~ 711 (722)
-.|.-|.|-.+++|...|.|||..
T Consensus 29 fdyadmneirlqreslsneldfpg 52 (179)
T d2ciwa2 29 FDYADMNEIRLQRESLSNELDFPG 52 (179)
T ss_dssp ECHHHHHHHHHHHHHHHHHHBCTT
T ss_pred ccccchhHHHHhHhhhcccccCCc
Confidence 347778899999999999999953
No 9
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=4.79 E-value=2.3e+02 Score=18.94 Aligned_cols=26 Identities=31% Similarity=0.316 Sum_probs=20.1
Q ss_pred ccCCCchhhHHHHHHHHHHHHHHHHH
Q 004956 485 LWRKANAIGAIAGTITGCLLGIITWL 510 (722)
Q Consensus 485 ~Wkr~n~~gAi~g~i~G~~~~i~~w~ 510 (722)
+||...+.-+.+|+....+.++.-++
T Consensus 7 lWKgv~Kpl~~~~~~~~~~~~~fHYv 32 (45)
T d1kqfb2 7 LWKGALKPLAAAGFIATFAGLIFHYI 32 (45)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHhhh
Confidence 59999999999998888876654443
No 10
>d1uptb_ a.193.1.1 (B:) Golgi autoantigen, golgin-245 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.55 E-value=2.3e+02 Score=19.82 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=0.0
Q ss_pred chhhhHhHHHHHHhhhHHHhhc
Q 004956 684 PEAENMYLLEKEKAKNKEAQRN 705 (722)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~ 705 (722)
|+.+..-.+|||+.++|...+.
T Consensus 35 ~~~Q~q~iL~kE~~r~~swl~~ 56 (58)
T d1uptb_ 35 PDDQTQKILEREDARLMSWLRS 56 (58)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHhcchhhHHhc
Done!