BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004960
(721 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BPT|A Chain A, Structure Of The Nup1p:kap95p Complex
pdb|2BKU|B Chain B, Kap95p:rangtp Complex
pdb|2BKU|D Chain D, Kap95p:rangtp Complex
pdb|3EA5|B Chain B, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|D Chain D, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 861
Score = 85.9 bits (211), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 125/572 (21%), Positives = 225/572 (39%), Gaps = 94/572 (16%)
Query: 6 ELLLIQFLMPDNDARRQAEDQIKRLAKDP--QVVPALVQHLRTAKTP-NVRQLAAVLLRK 62
+LL L PD + R +E Q+K+L+ D Q Q L T R LAA+ L+
Sbjct: 8 QLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKN 67
Query: 63 KITG-----------HW-AKLSPQLKQLVK-QSLIESITLEHSAPVRRASANVVSIIAKY 109
++ W ++SP+ K +K +L +++E A +
Sbjct: 68 ELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIE- 126
Query: 110 AVPAGEWPDLLPFLFQFSQSEQEEH-REVALILFSSLTETIGQTFRPHFADMQALLLKCL 168
+P G WP+L+ + + +EQ E+ + +L+ + E+ + + +L+ +
Sbjct: 127 -LPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIV 185
Query: 169 Q----DETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAV 224
Q ETS VR+AAL A+ L F + E R ++ ++ C A+ ED+ V
Sbjct: 186 QGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVV-----CEATQAEDIEV 240
Query: 225 --IAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISW------- 275
AF +++ + ++ + ++L +++ + PN + ++ + W
Sbjct: 241 QAAAFGCLCKIMSKYYTFMKPYMEQAL-YALTIATMKS--PNDKVASMTVEFWSTICEEE 297
Query: 276 ------LAKYKYNSLKKHKLVIPILQVMCP----LLAESNEAGEDDDLAPDRAAAEVIDT 325
LA++ + L+ + + ++ + P LL NE EDDD +A +
Sbjct: 298 IDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQL 357
Query: 326 MALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLG 385
A N H+ PV EF + + + REAAV A G I +G
Sbjct: 358 FAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDG------------------ 399
Query: 386 ALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAA 445
P++ R + LP ILN + D+S +VKE + + +
Sbjct: 400 ----PDKVQR------------------TYYVHQALPSILNLMNDQSLQVKETTAWCIGR 437
Query: 446 FCEDMGEEILP--FLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVL 503
+ + E I P L ++ L L++ P+ + I V AE P
Sbjct: 438 IADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYP 497
Query: 504 ELLKIFMVLTN--DEDLRSRARATELLGLVAE 533
L+ + N D + +RA A L + E
Sbjct: 498 ALVDGLIGAANRIDNEFNARASAFSALTTMVE 529
>pdb|3ND2|A Chain A, Structure Of Yeast Importin-Beta (Kap95p)
Length = 861
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 125/572 (21%), Positives = 225/572 (39%), Gaps = 94/572 (16%)
Query: 6 ELLLIQFLMPDNDARRQAEDQIKRLAKDP--QVVPALVQHLRTAKTP-NVRQLAAVLLRK 62
+LL L PD + R +E Q+K+L+ D Q Q L T R LAA+ L+
Sbjct: 8 QLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKN 67
Query: 63 KITG-----------HW-AKLSPQLKQLVK-QSLIESITLEHSAPVRRASANVVSIIAKY 109
++ W ++SP+ K +K +L +++E A +
Sbjct: 68 ELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIE- 126
Query: 110 AVPAGEWPDLLPFLFQFSQSEQEEH-REVALILFSSLTETIGQTFRPHFADMQALLLKCL 168
+P G WP+L+ + + +EQ E+ + +L+ + E+ + + +L+ +
Sbjct: 127 -LPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIV 185
Query: 169 Q----DETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAV 224
Q ETS VR+AAL A+ L F + E R ++ ++ C A+ ED+ V
Sbjct: 186 QGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVV-----CEATQAEDIEV 240
Query: 225 --IAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISW------- 275
AF +++ + ++ + ++L +++ + PN + ++ + W
Sbjct: 241 QAAAFGCLCKIMSLYYTFMKPYMEQAL-YALTIATMKS--PNDKVASMTVEFWSTICEEE 297
Query: 276 ------LAKYKYNSLKKHKLVIPILQVMCP----LLAESNEAGEDDDLAPDRAAAEVIDT 325
LA++ + L+ + + ++ + P LL NE EDDD +A +
Sbjct: 298 IDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQL 357
Query: 326 MALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLG 385
A N H+ PV EF + + + REAAV A G I +G
Sbjct: 358 FAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDG------------------ 399
Query: 386 ALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAA 445
P++ R + LP ILN + D+S +VKE + + +
Sbjct: 400 ----PDKVQR------------------TYYVHQALPSILNLMNDQSLQVKETTAWCIGR 437
Query: 446 FCEDMGEEILP--FLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVL 503
+ + E I P L ++ L L++ P+ + I V AE P
Sbjct: 438 IADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYP 497
Query: 504 ELLKIFMVLTN--DEDLRSRARATELLGLVAE 533
L+ + N D + +RA A L + E
Sbjct: 498 ALVDGLIGAANRIDNEFNARASAFSALTTMVE 529
>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|2OT8|B Chain B, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|4FDD|A Chain A, Crystal Structure Of Kap Beta2-Py-Nls
pdb|4H1K|A Chain A, Crystal Structure Of Human Kap-Beta2 Bound To The Nls Of
Saccharomyces Cerevisiae Nab2
Length = 852
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 122/603 (20%), Positives = 232/603 (38%), Gaps = 94/603 (15%)
Query: 15 PDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPN--VRQLAAVLLRKKITGHWAKLS 72
PD +R + ++++L + P L+ L K+ + R L+ ++L+ + H+
Sbjct: 25 PDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFP 84
Query: 73 PQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQE 132
+ +K + +I S+P+ RA+ ++ WPDLLP L SE
Sbjct: 85 NGVTDFIKSECLNNIG--DSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDY 142
Query: 133 EHREVALILFSSLTETIGQTFRPHFAD--MQALLLKCLQ--DETSNRVRIAALKAIGSFL 188
E A + E + D + ++ K LQ +S ++R A+ + F+
Sbjct: 143 NTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFI 202
Query: 189 EFTNDGAEVVKFREFIPSILNVSRQCLASGEE-DVAVIAFEIFDELIESPAPLLGDSVKS 247
+ A ++ FI ++ LA EE +V L+E L + +
Sbjct: 203 -ISRTQALMLHIDSFIENLF-----ALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHN 256
Query: 248 IVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKY--NSLKKH-KLVIPIL-------QVM 297
IV + L+ + + + N +A + LA+ + L +H +IP+L +
Sbjct: 257 IVEYMLQ--RTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDID 314
Query: 298 CPLLAESNEAGED-DDLAPD----RAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPK 352
LL E G DD D + +A +D +A + P + +
Sbjct: 315 IILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWV 374
Query: 353 YREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPE 412
+E+ + +G I+EGC + M L ++ ++ L D + VR + L ++A +
Sbjct: 375 VKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHW---- 430
Query: 413 IVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENS 472
+VS +L PLM +LL + +S
Sbjct: 431 VVSQPPDT------------------------------------YLKPLMTELLKRILDS 454
Query: 473 PRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVA 532
+ +QE SA ++ A +PY +L+ L ++L A +G +A
Sbjct: 455 NKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDA---IGTLA 511
Query: 533 ESVGRARMEP-----ILPPFVEAAISGFGLEFSELREYTHGFF------SNIAGVLEDGF 581
+SVG +P ++PP ++ +++ L++ F S++A L+ GF
Sbjct: 512 DSVGHHLNKPEYIQMLMPPLIQ--------KWNMLKDEDKDLFPLLECLSSVATALQSGF 563
Query: 582 AQY 584
Y
Sbjct: 564 LPY 566
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 97/489 (19%), Positives = 191/489 (39%), Gaps = 64/489 (13%)
Query: 59 LLRKKITGHWAKLSPQLKQLVKQSLIESITLEHSAP-------------VRRASANVVSI 105
+ + + H KL P L +K S I+ I L+ +R+ SA + +
Sbjct: 288 ICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDV 347
Query: 106 IAKYAVPAGEW-PDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALL 164
+A V E P +LP L + + +E +++ ++ E Q P+ ++ L
Sbjct: 348 LAN--VYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHL 405
Query: 165 LKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFR----EFIPSILNVSRQCLASGEE 220
++CL D+ + VR + + + + E + IL+ +++ +
Sbjct: 406 IQCLSDKKA-LVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACS 464
Query: 221 DVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYK 280
A + E EL+ P L + ++V F+ NL + AI ++ +
Sbjct: 465 AFATLEEEACTELV----PYLAYILDTLV-FAFSKYQHKNLL--ILYDAIGTLADSVGHH 517
Query: 281 YNSLKKHKLVIPILQVMCPLLAESNE-AGEDDDLAPDRAAAEVIDTMALNLAKHVFP--- 336
N + ++++P PL+ + N ED DL P E + ++A L P
Sbjct: 518 LNKPEYIQMLMP------PLIQKWNMLKDEDKDLFP---LLECLSSVATALQSGFLPYCE 568
Query: 337 PVFE---------FASVSCQNASPKYREA-----AVTAIGIISEGCAEWMKEKLE----- 377
PV++ A NA P EA + A+ ++S G AE + +E
Sbjct: 569 PVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLS-GLAEGLGGNIEQLVAR 627
Query: 378 -SVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVK 436
++L ++ ++D VR ++ LG + + +P + L E V
Sbjct: 628 SNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVC 687
Query: 437 EKSYYALAAFCEDMGEEILPFLDPLMGKLLAALE--NSPRNLQETCMSAIGSVAAAAEQA 494
+ +A+ MG E+ P++ ++ +L+ + N+P+ L E IG + Q
Sbjct: 688 NNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQE 747
Query: 495 FIPYAERVL 503
P ++ +
Sbjct: 748 VAPMLQQFI 756
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 43/218 (19%), Positives = 90/218 (41%), Gaps = 17/218 (7%)
Query: 414 VSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGE----EILPF-LDPLMGKLLAA 468
+ ++ +LP + + L+ E E ++ AL CED E ++L L+ ++ K L
Sbjct: 123 LQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQF 182
Query: 469 LENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELL 528
++S ++ ++ + + QA + + + +E L L DE+ R L
Sbjct: 183 FKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENL---FALAGDEEPEVRKNVCRAL 239
Query: 529 GLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIA--GVLEDGFAQYLP 586
++ E V R+ P + VE + + + F+ +A + +D ++LP
Sbjct: 240 VMLLE-VRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLP 298
Query: 587 LVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDD 624
++P+ + D + + G + GG DD
Sbjct: 299 KLIPVLVNGMKYSDIDIILLKGDVE------GGSGGDD 330
>pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls
pdb|2H4M|B Chain B, Karyopherin Beta2TRANSPORTIN-M9nls
Length = 865
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 121/592 (20%), Positives = 244/592 (41%), Gaps = 59/592 (9%)
Query: 15 PDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPN--VRQLAAVLLRKKITGHWAKLS 72
PD +R + ++++L + P L+ L K+ + R L+ ++L+ + H+
Sbjct: 25 PDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFP 84
Query: 73 PQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGE---WPDLLPFLFQFSQS 129
+ +K + +I S+P+ RA+ V I+ GE WPDLLP L S
Sbjct: 85 NGVTDFIKSECLNNIG--DSSPLIRAT---VGILITTIASKGELQNWPDLLPKLCSLLDS 139
Query: 130 EQEEHREVALILFSSLTETIGQTFRPHFAD--MQALLLKCLQ--DETSNRVRIAALKAIG 185
E E A + E + D + ++ K LQ +S ++R A+ +
Sbjct: 140 EDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVN 199
Query: 186 SFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEE-DVAVIAFEIFDELIESPAPLLGDS 244
F+ + A ++ FI ++ LA EE +V L+E L
Sbjct: 200 QFI-ISRTQALMLHIDSFIENLF-----ALAGDEEPEVRKNVCRALVMLLEVRMDRLLPH 253
Query: 245 VKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAES 304
+ +IV + L+ + + + N +A + WL + K +++ L + P+L
Sbjct: 254 MHNIVEYMLQ--RTQDQDENVALEACEF--WLTLAEQPICKD--VLVRHLPKLIPVLVNG 307
Query: 305 NEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGII 364
+ D D+ + E +T+ + + + ++S N R+ + A+ ++
Sbjct: 308 MKYS-DIDIILLKGDVEEDETIP-DSEQDIGGSGGSGDTISDWN----LRKCSAAALDVL 361
Query: 365 SEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCI 424
+ + E L +L ++ L E V+ + LG AE ++ + ++P +
Sbjct: 362 ANV---YRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHL 418
Query: 425 LNALEDESDEVKEKSYYALAAFCEDM-GEEILPFLDPLMGKLLAALENSPRNLQETCMSA 483
+ L D+ V+ + + L+ + + + +L PLM +LL + +S + +QE SA
Sbjct: 419 IQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSA 478
Query: 484 IGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEP- 542
++ A +PY +L+ L ++L A +G +A+SVG +P
Sbjct: 479 FATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDA---IGTLADSVGHHLNKPE 535
Query: 543 ----ILPPFVEAAISGFGLEFSELREYTHGFF------SNIAGVLEDGFAQY 584
++PP ++ +++ L++ F S++A L+ GF Y
Sbjct: 536 YIQMLMPPLIQ--------KWNMLKDEDKDLFPLLECLSSVATALQSGFLPY 579
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 87/440 (19%), Positives = 175/440 (39%), Gaps = 51/440 (11%)
Query: 95 VRRASANVVSIIAKYAVPAGEW-PDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTF 153
+R+ SA + ++A V E P +LP L + + +E +++ ++ E Q
Sbjct: 350 LRKCSAAALDVLAN--VYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGM 407
Query: 154 RPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFR----EFIPSILN 209
P+ ++ L++CL D+ + VR + + + + E + IL+
Sbjct: 408 IPYLPELIPHLIQCLSDKKA-LVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILD 466
Query: 210 VSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQA 269
+++ + A + E EL+ P L + ++V F+ NL + A
Sbjct: 467 SNKRVQEAACSAFATLEEEACTELV----PYLAYILDTLV-FAFSKYQHKNLL--ILYDA 519
Query: 270 IQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNE-AGEDDDLAPDRAAAEVIDTMAL 328
I ++ + N + ++++P PL+ + N ED DL P E + ++A
Sbjct: 520 IGTLADSVGHHLNKPEYIQMLMP------PLIQKWNMLKDEDKDLFP---LLECLSSVAT 570
Query: 329 NLAKHVFP---PVFE---------FASVSCQNASPKYREA-----AVTAIGIISEGCAEW 371
L P PV++ A NA P EA + A+ ++S G AE
Sbjct: 571 ALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLS-GLAEG 629
Query: 372 MKEKLE------SVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCIL 425
+ +E ++L ++ ++D VR ++ LG + + +P +
Sbjct: 630 LGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILG 689
Query: 426 NALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALE--NSPRNLQETCMSA 483
L E V + +A+ MG E+ P++ ++ +L+ + N+P+ L E
Sbjct: 690 TNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAIT 749
Query: 484 IGSVAAAAEQAFIPYAERVL 503
IG + Q P ++ +
Sbjct: 750 IGRLGYVCPQEVAPMLQQFI 769
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 40/207 (19%), Positives = 88/207 (42%), Gaps = 11/207 (5%)
Query: 414 VSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGE----EILPF-LDPLMGKLLAA 468
+ ++ +LP + + L+ E E ++ AL CED E ++L L+ ++ K L
Sbjct: 123 LQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQF 182
Query: 469 LENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELL 528
++S ++ ++ + + QA + + + +E L L DE+ R L
Sbjct: 183 FKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENL---FALAGDEEPEVRKNVCRAL 239
Query: 529 GLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIA--GVLEDGFAQYLP 586
++ E V R+ P + VE + + + F+ +A + +D ++LP
Sbjct: 240 VMLLE-VRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLP 298
Query: 587 LVVPLAFSSCNLDDGSAVDIDGSDDEN 613
++P+ + D + + G +E+
Sbjct: 299 KLIPVLVNGMKYSDIDIILLKGDVEED 325
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 99/437 (22%), Positives = 185/437 (42%), Gaps = 55/437 (12%)
Query: 26 QIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIE 85
Q+ R+A Q+ +L T+K P+++ + W + ++ VK +++
Sbjct: 51 QVARVAAGLQIKNSL-----TSKDPDIK--------AQYQQRWLAIDANARREVKNYVLQ 97
Query: 86 SITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLF-QFSQSEQEEHREVALILFSS 144
++ E P +++ V+ IA +P +WP+L+P L + EH + S
Sbjct: 98 TLGTETYRP--SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEH------MKES 149
Query: 145 LTETIG---QTFRP-HFAD-----MQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGA 195
E IG Q P D + A++ ++E SN V++AA A+ + LEFT
Sbjct: 150 TLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANF 209
Query: 196 EVVKFREFIPSILNVSRQC------LASGEEDVAVIA-FEIFDELIESPA-------PLL 241
+ R FI ++ + QC +A+ + V +++ + + E PA +
Sbjct: 210 DKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK 269
Query: 242 GD----SVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVM 297
D +++ I +S +L A Q K+ + + ++PIL
Sbjct: 270 SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILT-- 327
Query: 298 CPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAA 357
L + +E +DDD P +AA + +A + P V F +N +YR+AA
Sbjct: 328 -QTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAA 386
Query: 358 VTAIGIISEGC-AEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVS- 415
V A G I EG +K + + ++ ++DP VR A++ +G+ E L ++
Sbjct: 387 VMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAIND 446
Query: 416 -HYESVLPCILNALEDE 431
+ +L C++ L E
Sbjct: 447 VYLAPLLQCLIEGLSAE 463
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 3/117 (2%)
Query: 394 VRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESD-EVKEKSYYALAAFCEDMGE 452
V+ A A+ E L E + + E+ P + L++ ++ +V + + C +
Sbjct: 624 VQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQS 683
Query: 453 EILPFLDPLMGKLLAAL--ENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLK 507
I+PF D +M LL L EN R+++ +S G +A A F Y E VL L+
Sbjct: 684 NIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQ 740
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 99/437 (22%), Positives = 184/437 (42%), Gaps = 55/437 (12%)
Query: 26 QIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIE 85
Q+ R+A Q+ +L T+K P+++ + W + ++ VK ++
Sbjct: 51 QVARVAAGLQIKNSL-----TSKDPDIK--------AQYQQRWLAIDANARREVKNYVLH 97
Query: 86 SITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLF-QFSQSEQEEHREVALILFSS 144
++ E P +++ V+ IA +P +WP+L+P L + EH + S
Sbjct: 98 TLGTETYRP--SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEH------MKES 149
Query: 145 LTETIG---QTFRP-HFAD-----MQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGA 195
E IG Q P D + A++ ++E SN V++AA A+ + LEFT
Sbjct: 150 TLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANF 209
Query: 196 EVVKFREFIPSILNVSRQC------LASGEEDVAVIA-FEIFDELIESPA-------PLL 241
+ R FI ++ + QC +A+ + V +++ + + E PA +
Sbjct: 210 DKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK 269
Query: 242 GD----SVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVM 297
D +++ I +S +L A Q K+ + + ++PIL
Sbjct: 270 SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILT-- 327
Query: 298 CPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAA 357
L + +E +DDD P +AA + +A + P V F +N +YR+AA
Sbjct: 328 -QTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAA 386
Query: 358 VTAIGIISEGC-AEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVS- 415
V A G I EG +K + + ++ ++DP VR A++ +G+ E L ++
Sbjct: 387 VMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAIND 446
Query: 416 -HYESVLPCILNALEDE 431
+ +L C++ L E
Sbjct: 447 VYLAPLLQCLIEGLSAE 463
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 3/117 (2%)
Query: 394 VRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESD-EVKEKSYYALAAFCEDMGE 452
V+ A A+ E L E + + E+ P + L++ ++ +V + + C +
Sbjct: 624 VQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQS 683
Query: 453 EILPFLDPLMGKLLAAL--ENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLK 507
I+PF D +M LL L EN R+++ +S G +A A F Y E VL L+
Sbjct: 684 NIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQ 740
>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B
Bound To The Non-Classical Nls(67-94) Of Pthrp
Length = 485
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 100/437 (22%), Positives = 186/437 (42%), Gaps = 55/437 (12%)
Query: 26 QIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIE 85
Q+ R+A Q+ +L T+K P+++ + W + ++ VK +++
Sbjct: 51 QVARVAAGLQIKNSL-----TSKDPDIK--------AQYQQRWLAIDANARREVKNYVLQ 97
Query: 86 SITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLF-QFSQSEQEEHREVALILFSS 144
++ E P +++ V+ IA +P +WP+L+P L + EH + S
Sbjct: 98 TLGTETYRP--SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEH------MKES 149
Query: 145 LTETIG---QTFRP-HFAD-----MQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGA 195
E IG Q P D + A++ ++E SN V++AA A+ + LEFT
Sbjct: 150 TLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANF 209
Query: 196 EVVKFREFIPSILNVSRQC------LASGEEDVAVIA-FEIFDELIESPA--PLLGDSVK 246
+ R FI ++ + QC +A+ + V +++ + + E PA + +++K
Sbjct: 210 DKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK 269
Query: 247 S---------IVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVM 297
S I +S +L A Q K+ + + ++PIL
Sbjct: 270 SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQT 329
Query: 298 CPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAA 357
L + +E +DDD P +AA + +A + P V F +N +YR+AA
Sbjct: 330 ---LTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAA 386
Query: 358 VTAIGIISEGC-AEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVS- 415
V A G I EG +K + + ++ ++DP VR A++ +G+ E L ++
Sbjct: 387 VMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAIND 446
Query: 416 -HYESVLPCILNALEDE 431
+ +L C++ L E
Sbjct: 447 VYLAPLLQCLIEGLSAE 463
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Query: 379 VLHIVLGALRDPEQFVRGAASFALGQFAEYLQP-EIVSHYESVLPCILNALEDESDEVKE 437
VL + +++P+ R AA A G E +P ++ +P ++ ++D S V++
Sbjct: 367 VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRD 426
Query: 438 KSYYALAAFCEDMGEEILP--FLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQA 494
+ + + CE + E + +L PL+ L+ L PR C A S+A AA +A
Sbjct: 427 TAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCW-AFSSLAEAAYEA 484
>pdb|1IBR|D Chain D, Complex Of Ran With Importin Beta
pdb|1IBR|B Chain B, Complex Of Ran With Importin Beta
Length = 462
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 99/434 (22%), Positives = 185/434 (42%), Gaps = 55/434 (12%)
Query: 26 QIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIE 85
Q+ R+A Q+ +L T+K P+++ + W + ++ VK +++
Sbjct: 51 QVARVAAGLQIKNSL-----TSKDPDIK--------AQYQQRWLAIDANARREVKNYVLQ 97
Query: 86 SITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLF-QFSQSEQEEHREVALILFSS 144
++ E P +++ V+ IA +P +WP+L+P L + EH + S
Sbjct: 98 TLGTETYRP--SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEH------MKES 149
Query: 145 LTETIG---QTFRP-HFAD-----MQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGA 195
E IG Q P D + A++ ++E SN V++AA A+ + LEFT
Sbjct: 150 TLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANF 209
Query: 196 EVVKFREFIPSILNVSRQC------LASGEEDVAVIA-FEIFDELIESPA--PLLGDSVK 246
+ R FI ++ + QC +A+ + V +++ + + E PA + +++K
Sbjct: 210 DKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK 269
Query: 247 S---------IVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVM 297
S I +S +L A Q K+ + + ++PIL
Sbjct: 270 SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQT 329
Query: 298 CPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAA 357
L + +E +DDD P +AA + +A + P V F +N +YR+AA
Sbjct: 330 ---LTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAA 386
Query: 358 VTAIGIISEGC-AEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVS- 415
V A G I EG +K + + ++ ++DP VR A++ +G+ E L ++
Sbjct: 387 VMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAIND 446
Query: 416 -HYESVLPCILNAL 428
+ +L C++ L
Sbjct: 447 VYLAPLLQCLIEGL 460
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 97/437 (22%), Positives = 184/437 (42%), Gaps = 55/437 (12%)
Query: 26 QIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIE 85
Q+ R+A Q+ +L T+K P+++ + W + ++ VK +++
Sbjct: 51 QVARVAAGLQIKNSL-----TSKDPDIK--------AQYQQRWLAIDANARREVKNYVLQ 97
Query: 86 SITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLF-QFSQSEQEEHREVALILFSS 144
++ E P +++ V+ IA +P +WP+L+P L + EH + S
Sbjct: 98 TLGTETYRP--SSASQCVAGIACAEIPVSQWPELIPQLVANVTNPNSTEH------MKES 149
Query: 145 LTETIG---QTFRP-HFAD-----MQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGA 195
E IG Q P D + A++ ++E SN V++AA A+ + LEFT
Sbjct: 150 TLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANF 209
Query: 196 EVVKFREFIPSILNVSRQC------LASGEEDVAVIA-FEIFDELIESPA-------PLL 241
+ R FI ++ + QC +A+ + V +++ + + E PA +
Sbjct: 210 DKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK 269
Query: 242 GD----SVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVM 297
D +++ I +S +L A Q K+ + + ++PIL
Sbjct: 270 SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILT-- 327
Query: 298 CPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAA 357
L + +E +DDD P +AA + ++ + P V F +N +YR+AA
Sbjct: 328 -QTLTKQDENDDDDDWNPCKAAGVCLMLLSTCCEDDIVPHVLPFIKEHIKNPDWRYRDAA 386
Query: 358 VTAIGIISEGC-AEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVS- 415
V A G I EG +K + + ++ ++DP VR ++ +G+ E L ++
Sbjct: 387 VMAFGSILEGPEPNQLKPLVIQAMPTLIELMKDPSVVVRDTTAWTVGRICELLPEAAIND 446
Query: 416 -HYESVLPCILNALEDE 431
+ +L C++ L E
Sbjct: 447 VYLAPLLQCLIEGLSAE 463
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 3/117 (2%)
Query: 394 VRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESD-EVKEKSYYALAAFCEDMGE 452
V+ A A+ E L E + + E+ P + L++ ++ +V + + C +
Sbjct: 624 VQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQS 683
Query: 453 EILPFLDPLMGKLLAAL--ENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLK 507
ILPF D +M LL L EN R+++ +S G +A A F Y E VL L+
Sbjct: 684 NILPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQ 740
>pdb|1F59|A Chain A, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1F59|B Chain B, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1O6P|A Chain A, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6P|B Chain B, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6O|A Chain A, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|B Chain B, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|C Chain C, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
Length = 442
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 96/413 (23%), Positives = 175/413 (42%), Gaps = 53/413 (12%)
Query: 26 QIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIE 85
Q+ R+A Q+ +L T+K P+++ + W + ++ VK ++
Sbjct: 51 QVARVAAGLQIKNSL-----TSKDPDIK--------AQYQQRWLAIDANARREVKNYVLH 97
Query: 86 SITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLF-QFSQSEQEEHREVALILFSS 144
++ E P +++ V+ IA +P +WP+L+P L + EH + S
Sbjct: 98 TLGTETYRP--SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEH------MKES 149
Query: 145 LTETIG---QTFRP-HFAD-----MQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGA 195
E IG Q P D + A++ ++E SN V++AA A+ + LEFT
Sbjct: 150 TLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANF 209
Query: 196 EVVKFREFIPSILNVSRQC------LASGEEDVAVIA-FEIFDELIESPA--PLLGDSVK 246
+ R FI ++ + QC +A+ + V +++ + + E PA + +++K
Sbjct: 210 DKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK 269
Query: 247 S---------IVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVM 297
S I +S +L A Q K+ + + ++PIL
Sbjct: 270 SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQT 329
Query: 298 CPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAA 357
L + +E +DDD P +AA + +A + P V F +N +YR+AA
Sbjct: 330 ---LTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAA 386
Query: 358 VTAIGIISEGC-AEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYL 409
V A G I EG +K + + ++ ++DP VR A++ +G+ E L
Sbjct: 387 VMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439
>pdb|1GCJ|A Chain A, N-Terminal Fragment Of Importin-Beta
pdb|1GCJ|B Chain B, N-Terminal Fragment Of Importin-Beta
Length = 460
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 94/413 (22%), Positives = 171/413 (41%), Gaps = 53/413 (12%)
Query: 26 QIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIE 85
Q+ R+A Q+ +L T+K P+++ + W + ++ VK +++
Sbjct: 57 QVARVAAGLQIKNSL-----TSKDPDIK--------AQYQQRWLAIDANARREVKNYVLQ 103
Query: 86 SITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLF-QFSQSEQEEHREVALILFSS 144
++ E P +++ V+ IA +P +WP+L+P L + EH + S
Sbjct: 104 TLGTETYRP--SSASQCVAGIACAEIPVSQWPELIPQLVANVTNPNSTEHXK------ES 155
Query: 145 LTETIG---QTFRP-HFAD-----MQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGA 195
E IG Q P D + A++ ++E SN V++AA A+ + LEFT
Sbjct: 156 TLEAIGYICQDIDPEQLQDKSNEILTAIIQGXRKEEPSNNVKLAATNALLNSLEFTKANF 215
Query: 196 EVVKFREFIPSILNVSRQC------LASGEEDVAVIA-FEIFDELIESPA--PLLGDSVK 246
+ R FI ++ + QC +A+ + V + + + + E PA + ++ K
Sbjct: 216 DKESERHFIXQVVCEATQCPDTRVRVAALQNLVKIXSLYYQYXETYXGPALFAITIEAXK 275
Query: 247 S---------IVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVM 297
S I +S +L A Q K+ + + ++PIL
Sbjct: 276 SDIDEVALQGIEFWSNVCDEEXDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQT 335
Query: 298 CPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAA 357
L + +E +DDD P +AA + ++ + P V F +N +YR+AA
Sbjct: 336 ---LTKQDENDDDDDWNPCKAAGVCLXLLSTCCEDDIVPHVLPFIKEHIKNPDWRYRDAA 392
Query: 358 VTAIGIISEGC-AEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYL 409
V A G I EG +K + ++ +DP VR ++ +G+ E L
Sbjct: 393 VXAFGSILEGPEPNQLKPLVIQAXPTLIELXKDPSVVVRDTTAWTVGRICELL 445
>pdb|2QMR|A Chain A, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|B Chain B, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|C Chain C, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|D Chain D, Karyopherin Beta2TRANSPORTIN
pdb|2Z5J|A Chain A, Free Transportin 1
pdb|2Z5K|A Chain A, Complex Of Transportin 1 With Tap Nls
pdb|2Z5M|A Chain A, Complex Of Transportin 1 With Tap Nls, Crystal Form 2
pdb|2Z5N|A Chain A, Complex Of Transportin 1 With Hnrnp D Nls
pdb|2Z5O|A Chain A, Complex Of Transportin 1 With Jktbp Nls
Length = 890
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/243 (20%), Positives = 107/243 (44%), Gaps = 26/243 (10%)
Query: 354 REAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEI 413
R+ + A+ +++ + E L +L ++ L E V+ + LG AE +
Sbjct: 376 RKCSAAALDVLANV---YRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGM 432
Query: 414 VSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDM-GEEILPFLDPLMGKLLAALENS 472
+ + ++P ++ L D+ V+ + + L+ + + + +L PLM +LL + +S
Sbjct: 433 IPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDS 492
Query: 473 PRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVA 532
+ +QE SA ++ A +PY +L+ L ++L A +G +A
Sbjct: 493 NKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDA---IGTLA 549
Query: 533 ESVGRARMEP-----ILPPFVEAAISGFGLEFSELREYTHGFF------SNIAGVLEDGF 581
+SVG +P ++PP ++ +++ L++ F S++A L+ GF
Sbjct: 550 DSVGHHLNKPEYIQMLMPPLIQ--------KWNMLKDEDKDLFPLLECLSSVATALQSGF 601
Query: 582 AQY 584
Y
Sbjct: 602 LPY 604
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 87/440 (19%), Positives = 175/440 (39%), Gaps = 51/440 (11%)
Query: 95 VRRASANVVSIIAKYAVPAGEW-PDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTF 153
+R+ SA + ++A V E P +LP L + + +E +++ ++ E Q
Sbjct: 375 LRKCSAAALDVLAN--VYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGM 432
Query: 154 RPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFR----EFIPSILN 209
P+ ++ L++CL D+ + VR + + + + E + IL+
Sbjct: 433 IPYLPELIPHLIQCLSDKKA-LVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILD 491
Query: 210 VSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQA 269
+++ + A + E EL+ P L + ++V F+ NL + A
Sbjct: 492 SNKRVQEAACSAFATLEEEACTELV----PYLAYILDTLV-FAFSKYQHKNLL--ILYDA 544
Query: 270 IQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNE-AGEDDDLAPDRAAAEVIDTMAL 328
I ++ + N + ++++P PL+ + N ED DL P E + ++A
Sbjct: 545 IGTLADSVGHHLNKPEYIQMLMP------PLIQKWNMLKDEDKDLFP---LLECLSSVAT 595
Query: 329 NLAKHVFP---PVFE---------FASVSCQNASPKYREAA-----VTAIGIISEGCAEW 371
L P PV++ A NA P EA + A+ ++S G AE
Sbjct: 596 ALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLS-GLAEG 654
Query: 372 MKEKLE------SVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCIL 425
+ +E ++L ++ ++D VR ++ LG + + +P +
Sbjct: 655 LGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILG 714
Query: 426 NALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALE--NSPRNLQETCMSA 483
L E V + +A+ MG E+ P++ ++ +L+ + N+P+ L E
Sbjct: 715 TNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAIT 774
Query: 484 IGSVAAAAEQAFIPYAERVL 503
IG + Q P ++ +
Sbjct: 775 IGRLGYVCPQEVAPMLQQFI 794
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/198 (20%), Positives = 79/198 (39%), Gaps = 48/198 (24%)
Query: 354 REAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYL--QP 411
+E+ + +G I+EGC + M L ++ ++ L D + VR + L ++A ++ QP
Sbjct: 414 KESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQP 473
Query: 412 EIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALE- 470
++ + ++ +L + D + V+E + A A E+ E++P+L ++ L+ A
Sbjct: 474 P-DTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSK 532
Query: 471 ------------------------NSPRNLQE--------------------TCMSAIGS 486
N P +Q + + S
Sbjct: 533 YQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSS 592
Query: 487 VAAAAEQAFIPYAERVLE 504
VA A + F+PY E V +
Sbjct: 593 VATALQSGFLPYCEPVYQ 610
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 74/180 (41%), Gaps = 8/180 (4%)
Query: 15 PDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPN--VRQLAAVLLRKKITGHWAKLS 72
PD +R + ++++L + P L+ L K+ + R L+ ++L+ + H+
Sbjct: 25 PDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFP 84
Query: 73 PQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQE 132
+ +K + +I S+P+ RA+ ++ WPDLLP L SE
Sbjct: 85 NGVTDFIKSECLNNIG--DSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDY 142
Query: 133 EHREVALILFSSLTETIGQTFRPHFAD--MQALLLKCLQ--DETSNRVRIAALKAIGSFL 188
E A + E + D + ++ K LQ +S ++R A+ + F+
Sbjct: 143 NTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFI 202
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 40/207 (19%), Positives = 88/207 (42%), Gaps = 11/207 (5%)
Query: 414 VSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGE----EILPF-LDPLMGKLLAA 468
+ ++ +LP + + L+ E E ++ AL CED E ++L L+ ++ K L
Sbjct: 123 LQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQF 182
Query: 469 LENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELL 528
++S ++ ++ + + QA + + + +E L L DE+ R L
Sbjct: 183 FKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENL---FALAGDEEPEVRKNVCRAL 239
Query: 529 GLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIA--GVLEDGFAQYLP 586
++ E V R+ P + VE + + + F+ +A + +D ++LP
Sbjct: 240 VMLLE-VRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLP 298
Query: 587 LVVPLAFSSCNLDDGSAVDIDGSDDEN 613
++P+ + D + + G +E+
Sbjct: 299 KLIPVLVNGMKYSDIDIILLKGDVEED 325
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
Complex With The Ibb-Domain Of Snurportin1 (1-65)
Length = 762
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 68/293 (23%), Positives = 127/293 (43%), Gaps = 24/293 (8%)
Query: 160 MQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQC----- 214
+ A++ ++E SN V++AA A+ + LEFT + R FI ++ + QC
Sbjct: 49 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRV 108
Query: 215 -LASGEEDVAVIA-FEIFDELIESPA-------PLLGD----SVKSIVHFSLEVSSSHNL 261
+A+ + V +++ + + E PA + D +++ I +S +L
Sbjct: 109 RVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDL 168
Query: 262 EPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAE 321
A Q K+ + + ++PIL L + +E +DDD P +AA
Sbjct: 169 AIEASEAAEQGRPPEHTSKFYAKGALQYLVPILT---QTLTKQDENDDDDDWNPCKAAGV 225
Query: 322 VIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGC-AEWMKEKLESVL 380
+ +A + P V F +N +YR+AAV A G I EG +K + +
Sbjct: 226 CLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAM 285
Query: 381 HIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVS--HYESVLPCILNALEDE 431
++ ++DP VR A++ +G+ E L ++ + +L C++ L E
Sbjct: 286 PTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE 338
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 3/117 (2%)
Query: 394 VRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESD-EVKEKSYYALAAFCEDMGE 452
V+ A A+ E L E + + E+ P + L++ ++ +V + + C +
Sbjct: 499 VQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQS 558
Query: 453 EILPFLDPLMGKLLAAL--ENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLK 507
I+PF D +M LL L EN R+++ +S G +A A F Y E VL L+
Sbjct: 559 NIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQ 615
>pdb|1QBK|B Chain B, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 890
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/243 (20%), Positives = 104/243 (42%), Gaps = 26/243 (10%)
Query: 354 REAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEI 413
R+ + A+ +++ + E L +L ++ L E V+ + LG AE
Sbjct: 376 RKCSAAALDVLANV---YRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCXQGX 432
Query: 414 VSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDM-GEEILPFLDPLMGKLLAALENS 472
+ + ++P ++ L D+ V+ + + L+ + + + +L PL +LL + +S
Sbjct: 433 IPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLXTELLKRILDS 492
Query: 473 PRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVA 532
+ +QE SA ++ A +PY +L+ L ++L A +G +A
Sbjct: 493 NKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDA---IGTLA 549
Query: 533 ESVGRARMEP-----ILPPFVEAAISGFGLEFSELREYTHGFF------SNIAGVLEDGF 581
+SVG +P + PP ++ +++ L++ F S++A L+ GF
Sbjct: 550 DSVGHHLNKPEYIQXLXPPLIQ--------KWNXLKDEDKDLFPLLECLSSVATALQSGF 601
Query: 582 AQY 584
Y
Sbjct: 602 LPY 604
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 73/180 (40%), Gaps = 8/180 (4%)
Query: 15 PDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPN--VRQLAAVLLRKKITGHWAKLS 72
PD +R + ++++L + P L+ L K+ + R L+ ++L+ + H+
Sbjct: 25 PDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFP 84
Query: 73 PQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQE 132
+ +K + +I S+P+ RA+ ++ WPDLLP L SE
Sbjct: 85 NGVTDFIKSECLNNIG--DSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDY 142
Query: 133 EHREVALILFSSLTETIGQTFRPHFAD--MQALLLKCLQ--DETSNRVRIAALKAIGSFL 188
E A + E + D + + K LQ +S ++R A+ + F+
Sbjct: 143 NTCEGAFGALQKICEDSAEILDSDVLDRPLNIXIPKFLQFFKHSSPKIRSHAVACVNQFI 202
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/197 (19%), Positives = 74/197 (37%), Gaps = 46/197 (23%)
Query: 354 REAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEI 413
+E+ + +G I+EGC + L ++ ++ L D + VR + L ++A ++ +
Sbjct: 414 KESGILVLGAIAEGCXQGXIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQP 473
Query: 414 VSHYESVLPC-ILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALE-- 470
Y L +L + D + V+E + A A E+ E++P+L ++ L+ A
Sbjct: 474 PDTYLKPLXTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKY 533
Query: 471 -----------------------NSPRNLQE--------------------TCMSAIGSV 487
N P +Q + + SV
Sbjct: 534 QHKNLLILYDAIGTLADSVGHHLNKPEYIQXLXPPLIQKWNXLKDEDKDLFPLLECLSSV 593
Query: 488 AAAAEQAFIPYAERVLE 504
A A + F+PY E V +
Sbjct: 594 ATALQSGFLPYCEPVYQ 610
>pdb|2X1G|F Chain F, Crystal Structure Of Importin13 - Mago-Y14 Complex
pdb|2X1G|G Chain G, Crystal Structure Of Importin13 - Mago-Y14 Complex
Length = 971
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%)
Query: 34 PQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEHSA 93
PQ Q ++ K+ V+ A+ L K+ HW ++ P+ ++ +KQ ++ESI
Sbjct: 38 PQAWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKILESIVRFAGG 97
Query: 94 PVRRASANVVSIIAKYAVPAGEWP 117
P + +S+ A GEWP
Sbjct: 98 PKIVLNRLCISLGAYIVHMLGEWP 121
>pdb|3LTM|A Chain A, Structure Of A New Family Of Artificial Alpha Helicoidal
Repeat Proteins (Alpha-Rep) Based On Thermostable
Heat-Like Repeats
pdb|3LTM|B Chain B, Structure Of A New Family Of Artificial Alpha Helicoidal
Repeat Proteins (Alpha-Rep) Based On Thermostable
Heat-Like Repeats
Length = 211
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 86/208 (41%), Gaps = 43/208 (20%)
Query: 336 PPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVR 395
P E + Q+ S R AA A+G I + E + ++ AL+D + +VR
Sbjct: 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVR 67
Query: 396 GAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEIL 455
AA+ ALGQ + E + ++ AL+DE V++ + AL ++
Sbjct: 68 RAAADALGQIGD----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGDERA---- 113
Query: 456 PFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTND 515
++P L+ AL++ ++ A+G + ER +E L + D
Sbjct: 114 --VEP----LIKALKDEDWFVRIAAAFALGEIG----------DERAVEPL---IKALKD 154
Query: 516 EDLRSRARATELLGLVAESVGRARMEPI 543
ED R A + LG + RA ME +
Sbjct: 155 EDGWVRQSAADALGEIGGERVRAAMEKL 182
>pdb|3LTJ|A Chain A, Structure Of A New Family Of Artificial Alpha Helicoidal
Repeat Proteins (Alpha-Rep) Based On Thermostable
Heat-Like Repeats
Length = 201
Score = 37.7 bits (86), Expect = 0.025, Method: Composition-based stats.
Identities = 51/208 (24%), Positives = 84/208 (40%), Gaps = 43/208 (20%)
Query: 336 PPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVR 395
P E + Q+ S R AA A+G I + E + ++ AL+D + +VR
Sbjct: 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVR 62
Query: 396 GAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEIL 455
AA+ ALGQ + E + ++ AL+DE V++ + AL ++ E
Sbjct: 63 RAAADALGQIGD----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAVE-- 110
Query: 456 PFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTND 515
L+ AL++ ++ A+G + ER +E L + D
Sbjct: 111 --------PLIKALKDEDWFVRIAAAFALGEIG----------DERAVEPL---IKALKD 149
Query: 516 EDLRSRARATELLGLVAESVGRARMEPI 543
ED R A + LG + RA ME +
Sbjct: 150 EDGWVRQSAADALGEIGGERVRAAMEKL 177
>pdb|1OYZ|A Chain A, X-Ray Structure Of Yiba_ecoli Northeast Structural
Genomics Consortium Target Et31
Length = 280
Score = 35.8 bits (81), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 25/131 (19%), Positives = 59/131 (45%), Gaps = 31/131 (23%)
Query: 336 PPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVR 395
P + E + ++ + S R A AI +I++ ++ + +++ L+DP VR
Sbjct: 127 PKIVEQSQITAFDKSTNVRRATAFAISVIND----------KATIPLLINLLKDPNGDVR 176
Query: 396 GAASFALGQFAEYLQPEIVSHYES--VLPCILNALEDESDEVK---------EKSYYALA 444
A+FA+ ++ Y++ + C + L+D+++EV+ K L+
Sbjct: 177 NWAAFAIN----------INKYDNSDIRDCFVEXLQDKNEEVRIEAIIGLSYRKDKRVLS 226
Query: 445 AFCEDMGEEIL 455
C+++ + +
Sbjct: 227 VLCDELKKNTV 237
>pdb|1B3U|A Chain A, Crystal Structure Of Constant Regulatory Domain Of Human
Pp2a, Pr65alpha
pdb|1B3U|B Chain B, Crystal Structure Of Constant Regulatory Domain Of Human
Pp2a, Pr65alpha
Length = 588
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 76/181 (41%), Gaps = 7/181 (3%)
Query: 373 KEKLES-VLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDE 431
+E LE+ V+ + A D VR + + + + PEI ++P N ++D
Sbjct: 236 QEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITK--TDLVPAFQNLMKDC 293
Query: 432 SDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAA 491
EV+ + + + FCE++ + + +M ++L ++ + + SA+ SV
Sbjct: 294 EAEVRAAASHKVKEFCENLSADCRE--NVIMSQILPCIKELVSDANQHVKSALASVIMGL 351
Query: 492 EQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVG-RARMEPILPPFVEA 550
+ + LL +F+ DE R L V E +G R + +LP VE
Sbjct: 352 -SPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVEL 410
Query: 551 A 551
A
Sbjct: 411 A 411
>pdb|2PKG|A Chain A, Structure Of A Complex Between The A Subunit Of Protein
Phosphatase 2a And The Small T Antigen Of Sv40
pdb|2PKG|B Chain B, Structure Of A Complex Between The A Subunit Of Protein
Phosphatase 2a And The Small T Antigen Of Sv40
Length = 580
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 76/181 (41%), Gaps = 7/181 (3%)
Query: 373 KEKLES-VLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDE 431
+E LE+ V+ + A D VR + + + + PEI ++P N ++D
Sbjct: 228 QEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITK--TDLVPAFQNLMKDC 285
Query: 432 SDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAA 491
EV+ + + + FCE++ + + +M ++L ++ + + SA+ SV
Sbjct: 286 EAEVRAAASHKVKEFCENLSADCRE--NVIMSQILPCIKELVSDANQHVKSALASVIMGL 343
Query: 492 EQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVG-RARMEPILPPFVEA 550
+ + LL +F+ DE R L V E +G R + +LP VE
Sbjct: 344 -SPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVEL 402
Query: 551 A 551
A
Sbjct: 403 A 403
>pdb|3DW8|A Chain A, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|D Chain D, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
Length = 582
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 76/181 (41%), Gaps = 7/181 (3%)
Query: 373 KEKLES-VLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDE 431
+E LE+ V+ + A D VR + + + + PEI ++P N ++D
Sbjct: 230 QEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITK--TDLVPAFQNLMKDC 287
Query: 432 SDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAA 491
EV+ + + + FCE++ + + +M ++L ++ + + SA+ SV
Sbjct: 288 EAEVRAAASHKVKEFCENLSADCRE--NVIMSQILPCIKELVSDANQHVKSALASVIMGL 345
Query: 492 EQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVG-RARMEPILPPFVEA 550
+ + LL +F+ DE R L V E +G R + +LP VE
Sbjct: 346 -SPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVEL 404
Query: 551 A 551
A
Sbjct: 405 A 405
>pdb|2IE3|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound
To Tumor- Inducing Toxins
pdb|2IE4|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound
To Okadaic Acid
pdb|2NPP|A Chain A, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|2NPP|D Chain D, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|3K7V|A Chain A, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-1
pdb|3K7W|A Chain A, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-2
Length = 589
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 76/181 (41%), Gaps = 7/181 (3%)
Query: 373 KEKLES-VLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDE 431
+E LE+ V+ + A D VR + + + + PEI ++P N ++D
Sbjct: 237 QEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITK--TDLVPAFQNLMKDC 294
Query: 432 SDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAA 491
EV+ + + + FCE++ + + +M ++L ++ + + SA+ SV
Sbjct: 295 EAEVRAAASHKVKEFCENLSADCRE--NVIMSQILPCIKELVSDANQHVKSALASVIMGL 352
Query: 492 EQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVG-RARMEPILPPFVEA 550
+ + LL +F+ DE R L V E +G R + +LP VE
Sbjct: 353 -SPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVEL 411
Query: 551 A 551
A
Sbjct: 412 A 412
>pdb|3FGA|A Chain A, Structural Basis Of Pp2a And Sgo Interaction
Length = 588
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 76/181 (41%), Gaps = 7/181 (3%)
Query: 373 KEKLES-VLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDE 431
+E LE+ V+ + A D VR + + + + PEI ++P N ++D
Sbjct: 236 QEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITK--TDLVPAFQNLMKDC 293
Query: 432 SDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAA 491
EV+ + + + FCE++ + + +M ++L ++ + + SA+ SV
Sbjct: 294 EAEVRAAASHKVKEFCENLSADCRE--NVIMTQILPCIKELVSDANQHVKSALASVIMGL 351
Query: 492 EQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVG-RARMEPILPPFVEA 550
+ + LL +F+ DE R L V E +G R + +LP VE
Sbjct: 352 -SPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVEL 410
Query: 551 A 551
A
Sbjct: 411 A 411
>pdb|2IAE|A Chain A, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2IAE|D Chain D, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2PF4|A Chain A, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|B Chain B, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|C Chain C, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|D Chain D, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
Length = 589
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 76/181 (41%), Gaps = 7/181 (3%)
Query: 373 KEKLES-VLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDE 431
+E LE+ V+ + A D VR + + + + PEI ++P N ++D
Sbjct: 237 QEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITK--TDLVPAFQNLMKDC 294
Query: 432 SDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAA 491
EV+ + + + FCE++ + + +M ++L ++ + + SA+ SV
Sbjct: 295 EAEVRAAASHKVKEFCENLSADCRE--NVIMTQILPCIKELVSDANQHVKSALASVIMGL 352
Query: 492 EQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVG-RARMEPILPPFVEA 550
+ + LL +F+ DE R L V E +G R + +LP VE
Sbjct: 353 -SPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVEL 411
Query: 551 A 551
A
Sbjct: 412 A 412
>pdb|4A0C|A Chain A, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|B Chain B, Structure Of The Cand1-Cul4b-Rbx1 Complex
Length = 1253
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
Query: 413 IVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAAL-EN 471
+V+ + S+L C+L L V++++ AL G + F+D L+ LL+ L +N
Sbjct: 192 LVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV--FVD-LIEHLLSELSKN 248
Query: 472 SPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDE 516
+ T + I +++ A Y E+++ L+ F + +DE
Sbjct: 249 DSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDE 293
>pdb|1U6G|C Chain C, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
Length = 1230
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
Query: 413 IVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAAL-EN 471
+V+ + S+L C+L L V++++ AL G + F+D L+ LL+ L +N
Sbjct: 169 LVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV--FVD-LIEHLLSELSKN 225
Query: 472 SPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDE 516
+ T + I +++ A Y E+++ L+ F + +DE
Sbjct: 226 DSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDE 270
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 66/164 (40%), Gaps = 23/164 (14%)
Query: 394 VRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEE 453
+R A +LG+ ++ +SV IL A S+EVK + YAL + E
Sbjct: 834 IRLLALLSLGEVGHHIDLSGQLELKSV---ILEAFSSPSEEVKSAASYALGSISVGNLPE 890
Query: 454 ILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLT 513
LPF +L + + P+ S +++A+ PY E + LL L
Sbjct: 891 YLPF-------VLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALL-----LK 938
Query: 514 NDEDLRSRARATELLGLVAESVGRARM---EPILPPFVEAAISG 554
+ E R +VAE +G+ + E +LP ISG
Sbjct: 939 HCECAEEGTR-----NVVAECLGKLTLIDPETLLPRLKGYLISG 977
>pdb|1YHU|D Chain D, Crystal Structure Of Riftia Pachyptila C1 Hemoglobin
Reveals Novel Assembly Of 24 Subunits.
pdb|1YHU|H Chain H, Crystal Structure Of Riftia Pachyptila C1 Hemoglobin
Reveals Novel Assembly Of 24 Subunits.
pdb|1YHU|L Chain L, Crystal Structure Of Riftia Pachyptila C1 Hemoglobin
Reveals Novel Assembly Of 24 Subunits.
pdb|1YHU|P Chain P, Crystal Structure Of Riftia Pachyptila C1 Hemoglobin
Reveals Novel Assembly Of 24 Subunits.
pdb|1YHU|T Chain T, Crystal Structure Of Riftia Pachyptila C1 Hemoglobin
Reveals Novel Assembly Of 24 Subunits.
pdb|1YHU|X Chain X, Crystal Structure Of Riftia Pachyptila C1 Hemoglobin
Reveals Novel Assembly Of 24 Subunits
Length = 149
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 13/81 (16%)
Query: 617 FGGVSSDD------EAHCERSVRNISVRTGVLDEKAAATQALGLFALH-------TKSSY 663
FG V D+ +AHC R V + G+L + A + L A TK +
Sbjct: 50 FGAVKGDEVNSNEFKAHCIRVVNGLDSSIGLLSDPATLNEQLSHLATQHKARSGVTKGGF 109
Query: 664 APFLEESLKILVRHASYFHED 684
+ + L+++ + AS F+ D
Sbjct: 110 SAIAQSFLRVMPQVASCFNPD 130
>pdb|4GH4|B Chain B, Crystal Structure Of Foot And Mouth Disease Virus A22
Serotype
Length = 207
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 261 LEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGE 309
+ P T A ++ +L +Y+ KKHK ++ V+ PL + AG+
Sbjct: 137 ISPRTNMTAHIVVPYLGVNRYDQYKKHKPWTLVVMVVSPLTTNTVSAGQ 185
>pdb|2NYL|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYL|D Chain D, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYM|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
pdb|2NYM|D Chain D, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
Length = 582
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 74/181 (40%), Gaps = 7/181 (3%)
Query: 373 KEKLESVLHIVL-GALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDE 431
+E LE+++ L A D VR + + + + PEI ++P N +D
Sbjct: 230 QEDLEALVXPTLRQAAEDKSWRVRYXVADKFTELQKAVGPEITK--TDLVPAFQNLXKDC 287
Query: 432 SDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAA 491
EV+ + + + FCE++ + + + ++L ++ + + SA+ SV
Sbjct: 288 EAEVRAAASHKVKEFCENLSADCRE--NVIXSQILPCIKELVSDANQHVKSALASVIXGL 345
Query: 492 EQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVG-RARMEPILPPFVEA 550
+ + LL +F+ DE R L V E +G R + +LP VE
Sbjct: 346 -SPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVEL 404
Query: 551 A 551
A
Sbjct: 405 A 405
>pdb|2KBI|A Chain A, Solution Nmr Structure Of The C-Terminal Ef-Hand Domain Of
Human Cardiac Sodium Channel Nav1.5
Length = 97
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 68 WAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSII 106
W K P+ Q ++ S++ S P+R A N +S+I
Sbjct: 30 WEKFDPEATQFIEYSVLSDFADALSEPLRIAKPNQISLI 68
>pdb|4DCK|A Chain A, Crystal Structure Of The C-Terminus Of Voltage-Gated
Sodium Channel In Complex With Fgf13 And Cam
Length = 168
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 68 WAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSII-AKYAVPAGEWPDLLPFLFQF 126
W K P+ Q ++ S++ S P+R A N +S+I + +G+ + LF F
Sbjct: 26 WEKFDPEATQFIEYSVLSDFADALSEPLRIAKPNQISLINMDLPMVSGDRIHCMDILFAF 85
Query: 127 SQ 128
++
Sbjct: 86 TK 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,282,544
Number of Sequences: 62578
Number of extensions: 758956
Number of successful extensions: 2207
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 2044
Number of HSP's gapped (non-prelim): 134
length of query: 721
length of database: 14,973,337
effective HSP length: 106
effective length of query: 615
effective length of database: 8,340,069
effective search space: 5129142435
effective search space used: 5129142435
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)