Query 004960
Match_columns 721
No_of_seqs 298 out of 2632
Neff 11.2
Searched_HMMs 46136
Date Thu Mar 28 15:45:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004960.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004960hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2171 Karyopherin (importin) 100.0 7.2E-84 1.6E-88 667.7 71.5 695 2-704 3-719 (1075)
2 KOG1241 Karyopherin (importin) 100.0 9.1E-62 2E-66 478.2 45.4 685 4-702 2-767 (859)
3 KOG2023 Nuclear transport rece 100.0 8.8E-62 1.9E-66 470.0 44.1 651 3-708 13-785 (885)
4 COG5215 KAP95 Karyopherin (imp 100.0 2.4E-52 5.1E-57 397.8 47.6 676 4-693 5-754 (858)
5 KOG1991 Nuclear transport rece 100.0 1E-36 2.3E-41 311.1 59.0 670 1-693 2-795 (1010)
6 KOG2171 Karyopherin (importin) 100.0 5.6E-31 1.2E-35 275.1 55.6 555 13-590 47-686 (1075)
7 KOG2023 Nuclear transport rece 100.0 3.4E-31 7.4E-36 258.2 38.1 612 34-707 9-700 (885)
8 KOG1241 Karyopherin (importin) 100.0 1.9E-29 4E-34 250.5 51.0 616 49-719 103-833 (859)
9 KOG1992 Nuclear export recepto 100.0 9.1E-29 2E-33 247.4 46.0 587 3-594 5-687 (960)
10 COG5656 SXM1 Importin, protein 100.0 2.1E-26 4.5E-31 227.8 56.6 499 1-508 1-587 (970)
11 KOG1993 Nuclear transport rece 100.0 1.1E-25 2.4E-30 224.4 49.6 585 5-597 2-709 (978)
12 KOG2274 Predicted importin 9 [ 100.0 5.4E-24 1.2E-28 215.9 54.8 647 2-705 3-741 (1005)
13 COG5215 KAP95 Karyopherin (imp 100.0 8.7E-23 1.9E-27 196.4 52.5 642 8-702 99-813 (858)
14 KOG1824 TATA-binding protein-i 100.0 2.9E-23 6.3E-28 210.8 51.3 619 7-705 9-687 (1233)
15 KOG0213 Splicing factor 3b, su 99.9 2.6E-21 5.6E-26 191.7 51.6 626 4-699 364-1066(1172)
16 KOG1824 TATA-binding protein-i 99.9 4.6E-22 9.9E-27 202.2 47.3 559 82-702 9-642 (1233)
17 KOG2021 Nuclear mRNA export fa 99.9 1.7E-21 3.8E-26 193.4 47.6 617 1-678 1-785 (980)
18 COG5101 CRM1 Importin beta-rel 99.9 6.6E-19 1.4E-23 171.9 53.6 475 5-489 16-648 (1053)
19 PLN03200 cellulose synthase-in 99.9 1E-18 2.3E-23 198.8 54.1 634 3-701 13-726 (2102)
20 PLN03200 cellulose synthase-in 99.9 4.2E-19 9.1E-24 202.0 46.6 626 5-701 60-767 (2102)
21 COG5181 HSH155 U2 snRNP splice 99.9 1.9E-19 4.1E-24 175.1 36.6 623 5-703 170-875 (975)
22 KOG2022 Nuclear transport rece 99.9 1.7E-15 3.6E-20 154.6 55.4 586 3-594 7-753 (982)
23 KOG1242 Protein containing ada 99.8 3.1E-17 6.7E-22 162.6 38.7 529 89-693 27-559 (569)
24 KOG0213 Splicing factor 3b, su 99.8 2.4E-16 5.3E-21 156.9 42.7 545 16-596 489-1045(1172)
25 KOG0212 Uncharacterized conser 99.8 1.5E-19 3.3E-24 174.3 19.6 395 313-721 14-421 (675)
26 COG5657 CSE1 CAS/CSE protein i 99.8 3.8E-15 8.3E-20 152.9 52.1 521 6-532 7-608 (947)
27 KOG0915 Uncharacterized conser 99.8 1.8E-16 4E-21 170.1 39.7 493 118-679 818-1366(1702)
28 KOG0166 Karyopherin (importin) 99.8 4.1E-17 8.9E-22 160.9 27.9 360 120-493 68-440 (514)
29 KOG1242 Protein containing ada 99.8 3.5E-15 7.6E-20 148.2 38.5 508 47-598 28-546 (569)
30 KOG0915 Uncharacterized conser 99.8 2.9E-15 6.2E-20 161.1 34.2 500 33-575 954-1469(1702)
31 KOG0212 Uncharacterized conser 99.8 2.4E-15 5.3E-20 145.8 30.1 396 164-579 5-410 (675)
32 PF01602 Adaptin_N: Adaptin N 99.7 2.2E-14 4.7E-19 154.7 40.6 506 4-573 8-522 (526)
33 PF01602 Adaptin_N: Adaptin N 99.7 1.1E-13 2.4E-18 149.3 45.3 508 77-696 3-522 (526)
34 PTZ00429 beta-adaptin; Provisi 99.7 1.5E-12 3.1E-17 139.0 51.5 466 7-532 72-545 (746)
35 KOG0166 Karyopherin (importin) 99.7 3.8E-14 8.2E-19 140.2 29.9 353 47-452 77-440 (514)
36 PTZ00429 beta-adaptin; Provisi 99.7 2.9E-11 6.3E-16 129.2 50.0 498 75-692 33-540 (746)
37 COG5181 HSH155 U2 snRNP splice 99.7 1.6E-12 3.6E-17 127.5 36.0 540 16-597 294-851 (975)
38 COG5064 SRP1 Karyopherin (impo 99.7 1.9E-15 4.2E-20 137.2 14.0 358 119-489 72-443 (526)
39 KOG2081 Nuclear transport regu 99.6 2.6E-11 5.7E-16 119.2 37.5 426 21-465 2-512 (559)
40 PF10508 Proteasom_PSMB: Prote 99.6 7.8E-11 1.7E-15 123.1 39.4 393 83-491 43-464 (503)
41 KOG0211 Protein phosphatase 2A 99.5 1.2E-10 2.6E-15 123.0 37.0 535 7-578 124-667 (759)
42 KOG0211 Protein phosphatase 2A 99.5 2.7E-10 5.7E-15 120.4 36.4 558 80-717 119-683 (759)
43 COG5064 SRP1 Karyopherin (impo 99.5 2.6E-12 5.7E-17 117.1 18.3 349 162-532 74-442 (526)
44 PF10508 Proteasom_PSMB: Prote 99.5 4.2E-10 9.2E-15 117.7 36.8 406 123-578 43-465 (503)
45 KOG1943 Beta-tubulin folding c 99.5 3.4E-09 7.3E-14 112.0 40.4 470 74-578 337-840 (1133)
46 KOG2020 Nuclear transport rece 99.4 1.1E-07 2.4E-12 104.0 51.8 144 3-148 10-163 (1041)
47 KOG1991 Nuclear transport rece 99.4 2.4E-07 5.1E-12 97.7 48.8 317 266-597 389-736 (1010)
48 KOG1060 Vesicle coat complex A 99.4 4E-09 8.6E-14 107.4 34.6 434 7-494 75-538 (968)
49 KOG1992 Nuclear export recepto 99.4 1.2E-07 2.5E-12 97.6 44.9 589 11-680 96-774 (960)
50 PRK09687 putative lyase; Provi 99.4 1E-10 2.2E-15 111.6 22.0 253 161-485 25-278 (280)
51 PF12460 MMS19_C: RNAPII trans 99.4 4.1E-09 9E-14 108.1 34.1 378 121-508 2-413 (415)
52 KOG1248 Uncharacterized conser 99.4 7.2E-07 1.6E-11 96.1 50.7 375 200-593 516-917 (1176)
53 PRK09687 putative lyase; Provi 99.4 4.3E-10 9.2E-15 107.4 24.5 254 120-445 25-279 (280)
54 PRK13800 putative oxidoreducta 99.3 4.7E-10 1E-14 126.4 28.4 274 119-485 622-895 (897)
55 PRK13800 putative oxidoreducta 99.3 3.5E-10 7.6E-15 127.4 27.2 273 81-445 624-896 (897)
56 KOG1062 Vesicle coat complex A 99.3 9.5E-08 2.1E-12 98.1 39.6 452 39-579 74-548 (866)
57 KOG1060 Vesicle coat complex A 99.3 1.6E-07 3.5E-12 96.0 38.8 380 83-501 40-470 (968)
58 KOG4224 Armadillo repeat prote 99.3 4.6E-10 9.9E-15 103.8 18.3 421 129-576 58-494 (550)
59 PF08506 Cse1: Cse1; InterPro 99.2 2.8E-09 6.1E-14 105.3 23.0 219 221-443 111-370 (370)
60 PF12755 Vac14_Fab1_bd: Vacuol 99.2 2.7E-10 5.9E-15 87.9 11.8 94 353-447 2-95 (97)
61 KOG1059 Vesicle coat complex A 99.2 1.5E-06 3.2E-11 88.4 40.4 279 126-450 117-403 (877)
62 KOG1943 Beta-tubulin folding c 99.2 1.2E-06 2.6E-11 93.3 40.8 497 46-576 351-882 (1133)
63 KOG1061 Vesicle coat complex A 99.2 1E-07 2.2E-12 98.1 32.0 467 9-532 55-527 (734)
64 KOG4224 Armadillo repeat prote 99.2 7.3E-09 1.6E-13 96.0 20.9 445 19-490 24-494 (550)
65 PF12460 MMS19_C: RNAPII trans 99.2 1.2E-07 2.5E-12 97.5 31.8 366 221-595 17-414 (415)
66 PF12348 CLASP_N: CLASP N term 99.1 5.4E-09 1.2E-13 98.6 18.3 193 337-537 7-210 (228)
67 KOG2032 Uncharacterized conser 99.1 8.5E-08 1.8E-12 93.1 24.2 315 332-698 212-531 (533)
68 PF12348 CLASP_N: CLASP N term 99.1 4.4E-09 9.6E-14 99.2 15.2 196 386-589 15-220 (228)
69 COG5240 SEC21 Vesicle coat com 99.1 7.9E-06 1.7E-10 81.0 37.1 107 79-190 23-132 (898)
70 PF03810 IBN_N: Importin-beta 99.0 1.1E-09 2.4E-14 82.7 8.5 66 23-88 1-76 (77)
71 KOG1248 Uncharacterized conser 99.0 9.7E-05 2.1E-09 80.3 58.1 615 14-698 106-767 (1176)
72 KOG1059 Vesicle coat complex A 99.0 6.5E-05 1.4E-09 76.9 42.8 342 71-451 137-493 (877)
73 KOG1062 Vesicle coat complex A 99.0 1.6E-05 3.5E-10 82.3 38.1 393 49-482 120-574 (866)
74 KOG2274 Predicted importin 9 [ 99.0 0.0001 2.3E-09 77.5 45.7 543 91-699 16-690 (1005)
75 KOG1020 Sister chromatid cohes 99.0 3.5E-05 7.6E-10 85.3 41.6 522 115-699 813-1369(1692)
76 KOG1077 Vesicle coat complex A 98.9 3E-05 6.4E-10 79.0 36.1 334 119-507 112-451 (938)
77 KOG1240 Protein kinase contain 98.9 4E-07 8.7E-12 97.6 23.2 299 161-492 424-728 (1431)
78 KOG1967 DNA repair/transcripti 98.9 2.6E-05 5.6E-10 82.1 35.1 218 352-571 789-1020(1030)
79 PF12755 Vac14_Fab1_bd: Vacuol 98.9 3.6E-08 7.8E-13 76.2 10.9 92 394-486 2-93 (97)
80 PF05804 KAP: Kinesin-associat 98.9 3.6E-05 7.7E-10 82.2 36.8 490 4-578 124-652 (708)
81 KOG1240 Protein kinase contain 98.9 3.3E-07 7.1E-12 98.2 21.5 297 119-451 423-728 (1431)
82 KOG0392 SNF2 family DNA-depend 98.8 4.9E-05 1.1E-09 82.5 36.6 143 47-191 88-239 (1549)
83 KOG1967 DNA repair/transcripti 98.8 0.00035 7.7E-09 73.9 47.3 159 497-696 863-1022(1030)
84 KOG1993 Nuclear transport rece 98.8 0.00035 7.7E-09 72.6 43.5 238 353-597 413-666 (978)
85 KOG1061 Vesicle coat complex A 98.8 3.3E-05 7.2E-10 80.1 31.7 402 115-565 46-479 (734)
86 KOG0414 Chromosome condensatio 98.8 0.00025 5.5E-09 77.0 38.9 112 37-150 314-431 (1251)
87 COG5240 SEC21 Vesicle coat com 98.7 1.7E-05 3.7E-10 78.7 25.5 313 54-406 241-554 (898)
88 cd00020 ARM Armadillo/beta-cat 98.7 1.9E-07 4.1E-12 78.1 10.4 110 338-447 8-119 (120)
89 KOG2021 Nuclear mRNA export fa 98.7 0.00083 1.8E-08 69.5 47.0 213 375-596 530-785 (980)
90 KOG1293 Proteins containing ar 98.7 0.00016 3.5E-09 73.6 31.9 477 6-491 12-535 (678)
91 KOG0168 Putative ubiquitin fus 98.7 6.1E-05 1.3E-09 78.5 29.4 372 119-511 168-653 (1051)
92 KOG1058 Vesicle coat complex C 98.6 0.001 2.2E-08 68.9 41.8 373 10-410 27-466 (948)
93 KOG1078 Vesicle coat complex C 98.6 0.0012 2.6E-08 68.7 37.6 377 94-533 39-421 (865)
94 COG5096 Vesicle coat complex, 98.6 0.0015 3.3E-08 69.6 38.4 164 14-190 30-196 (757)
95 KOG2956 CLIP-associating prote 98.6 1E-05 2.2E-10 78.6 19.8 203 338-550 288-494 (516)
96 KOG4413 26S proteasome regulat 98.5 0.00041 8.9E-09 64.3 28.2 294 137-450 62-379 (524)
97 PF13513 HEAT_EZ: HEAT-like re 98.5 2.6E-07 5.6E-12 64.0 5.8 55 351-405 1-55 (55)
98 KOG2259 Uncharacterized conser 98.5 0.00028 6E-09 71.8 28.1 301 158-494 197-516 (823)
99 KOG1020 Sister chromatid cohes 98.5 0.005 1.1E-07 69.1 46.7 400 80-494 818-1259(1692)
100 cd00020 ARM Armadillo/beta-cat 98.5 6.2E-07 1.3E-11 75.0 8.6 111 378-488 7-119 (120)
101 KOG4535 HEAT and armadillo rep 98.5 0.0001 2.2E-09 71.8 24.0 495 93-598 10-584 (728)
102 KOG2956 CLIP-associating prote 98.5 2.3E-05 4.9E-10 76.2 19.3 198 389-596 298-499 (516)
103 PF04826 Arm_2: Armadillo-like 98.5 1.5E-05 3.3E-10 74.5 17.7 194 337-537 12-209 (254)
104 KOG1058 Vesicle coat complex C 98.5 0.0012 2.6E-08 68.4 32.0 430 84-578 26-466 (948)
105 KOG0414 Chromosome condensatio 98.4 0.0015 3.3E-08 71.3 33.6 460 3-488 541-1063(1251)
106 PF13513 HEAT_EZ: HEAT-like re 98.4 6.4E-07 1.4E-11 62.0 5.7 55 392-446 1-55 (55)
107 KOG1820 Microtubule-associated 98.4 1.5E-05 3.1E-10 86.0 16.8 201 333-542 249-452 (815)
108 COG5096 Vesicle coat complex, 98.3 0.0073 1.6E-07 64.6 36.0 173 163-367 22-196 (757)
109 KOG0168 Putative ubiquitin fus 98.3 0.0022 4.8E-08 67.4 31.2 186 4-191 168-366 (1051)
110 KOG1077 Vesicle coat complex A 98.3 0.0055 1.2E-07 63.2 36.4 425 13-485 121-583 (938)
111 KOG4653 Uncharacterized conser 98.3 7.2E-05 1.6E-09 78.2 20.4 234 421-702 729-968 (982)
112 KOG0891 DNA-dependent protein 98.3 0.0034 7.4E-08 75.6 35.7 543 17-589 458-1055(2341)
113 KOG2259 Uncharacterized conser 98.3 0.0005 1.1E-08 70.0 24.6 288 214-536 206-514 (823)
114 PF05804 KAP: Kinesin-associat 98.3 0.0011 2.4E-08 71.2 28.7 367 91-490 262-650 (708)
115 KOG2032 Uncharacterized conser 98.3 0.00035 7.5E-09 68.8 22.6 264 117-407 257-531 (533)
116 KOG4653 Uncharacterized conser 98.3 0.00011 2.4E-09 76.9 19.8 200 380-586 729-929 (982)
117 cd00256 VATPase_H VATPase_H, r 98.2 0.0019 4.1E-08 64.9 27.6 350 34-407 52-425 (429)
118 KOG1410 Nuclear transport rece 98.2 0.0091 2E-07 61.3 48.9 146 3-149 5-159 (1082)
119 PF08389 Xpo1: Exportin 1-like 98.2 9.1E-06 2E-10 70.8 10.0 129 92-230 1-148 (148)
120 KOG1293 Proteins containing ar 98.1 0.014 3.1E-07 60.0 33.0 466 48-532 21-532 (678)
121 KOG1078 Vesicle coat complex C 98.1 0.017 3.7E-07 60.7 36.4 110 69-189 55-164 (865)
122 KOG4413 26S proteasome regulat 98.1 0.00097 2.1E-08 61.9 21.2 335 96-447 60-438 (524)
123 PF10274 ParcG: Parkin co-regu 98.1 4.1E-05 8.8E-10 66.1 11.7 123 417-539 36-170 (183)
124 PLN03076 ARF guanine nucleotid 98.1 0.046 9.9E-07 65.3 44.0 291 48-345 1149-1510(1780)
125 PF12717 Cnd1: non-SMC mitotic 98.1 0.00018 4E-09 64.2 16.3 109 391-506 1-110 (178)
126 KOG4535 HEAT and armadillo rep 98.1 0.0036 7.8E-08 61.5 25.6 475 172-700 8-561 (728)
127 PF14500 MMS19_N: Dos2-interac 98.1 0.001 2.2E-08 62.9 21.7 237 383-676 4-257 (262)
128 PF13646 HEAT_2: HEAT repeats; 98.1 1.7E-05 3.6E-10 61.7 7.6 85 340-444 2-88 (88)
129 KOG2759 Vacuolar H+-ATPase V1 98.1 0.0064 1.4E-07 59.1 25.9 352 34-407 64-438 (442)
130 PF08167 RIX1: rRNA processing 98.0 0.00034 7.4E-09 61.2 15.9 135 374-510 21-164 (165)
131 PF05004 IFRD: Interferon-rela 98.0 0.0044 9.6E-08 60.4 24.9 205 345-552 51-279 (309)
132 PF05004 IFRD: Interferon-rela 98.0 0.0014 3E-08 63.9 21.4 197 382-579 47-261 (309)
133 KOG4500 Rho/Rac GTPase guanine 98.0 0.0031 6.6E-08 61.1 22.5 155 336-490 314-476 (604)
134 KOG2933 Uncharacterized conser 98.0 0.00027 5.8E-09 65.4 14.6 149 338-492 89-237 (334)
135 PF14500 MMS19_N: Dos2-interac 98.0 0.0016 3.5E-08 61.6 20.4 239 341-593 3-256 (262)
136 PF12717 Cnd1: non-SMC mitotic 98.0 0.00031 6.7E-09 62.7 14.7 107 314-424 3-110 (178)
137 PF03378 CAS_CSE1: CAS/CSE pro 98.0 0.0007 1.5E-08 69.1 18.8 225 350-580 43-277 (435)
138 KOG1820 Microtubule-associated 98.0 0.00021 4.6E-09 77.3 15.8 206 376-590 251-459 (815)
139 PLN03076 ARF guanine nucleotid 97.9 0.014 3E-07 69.5 31.1 348 70-431 1081-1514(1780)
140 COG1413 FOG: HEAT repeat [Ener 97.9 0.0038 8.3E-08 62.9 23.8 252 117-447 42-303 (335)
141 PF03378 CAS_CSE1: CAS/CSE pro 97.9 0.0048 1E-07 63.1 24.0 305 116-432 24-352 (435)
142 PF05918 API5: Apoptosis inhib 97.9 0.0025 5.5E-08 65.8 21.8 275 218-512 34-321 (556)
143 KOG2022 Nuclear transport rece 97.9 0.054 1.2E-06 57.9 38.3 157 115-279 459-620 (982)
144 PF04510 DUF577: Family of unk 97.9 0.0012 2.6E-08 55.8 15.6 154 78-235 3-164 (174)
145 PF13646 HEAT_2: HEAT repeats; 97.9 5.8E-05 1.3E-09 58.6 7.7 86 380-485 1-88 (88)
146 KOG0891 DNA-dependent protein 97.9 0.091 2E-06 64.1 36.3 263 123-406 486-762 (2341)
147 TIGR02270 conserved hypothetic 97.9 0.011 2.5E-07 59.8 25.3 243 78-407 54-296 (410)
148 PF11864 DUF3384: Domain of un 97.9 0.054 1.2E-06 56.8 34.1 299 93-411 4-335 (464)
149 PF08506 Cse1: Cse1; InterPro 97.9 0.0084 1.8E-07 59.9 24.1 239 150-402 73-370 (370)
150 KOG0889 Histone acetyltransfer 97.8 0.18 3.9E-06 62.5 42.3 513 152-699 714-1307(3550)
151 PF04826 Arm_2: Armadillo-like 97.8 0.00096 2.1E-08 62.5 15.5 188 81-279 15-206 (254)
152 PF05918 API5: Apoptosis inhib 97.8 0.011 2.3E-07 61.4 23.9 294 119-444 24-337 (556)
153 COG5656 SXM1 Importin, protein 97.7 0.086 1.9E-06 55.3 44.7 398 65-511 333-780 (970)
154 COG1413 FOG: HEAT repeat [Ener 97.7 0.015 3.2E-07 58.6 23.9 222 159-444 43-269 (335)
155 PF08767 CRM1_C: CRM1 C termin 97.7 0.00033 7.1E-09 68.8 10.8 165 521-720 44-215 (319)
156 KOG1822 Uncharacterized conser 97.7 0.13 2.9E-06 59.8 31.7 382 314-710 891-1346(2067)
157 KOG2160 Armadillo/beta-catenin 97.7 0.0047 1E-07 59.1 17.5 147 347-493 93-244 (342)
158 PF08167 RIX1: rRNA processing 97.6 0.0029 6.3E-08 55.4 15.1 134 334-469 22-164 (165)
159 KOG1851 Uncharacterized conser 97.6 0.22 4.7E-06 57.1 33.0 174 316-493 1504-1682(1710)
160 KOG2062 26S proteasome regulat 97.6 0.022 4.9E-07 59.3 22.8 116 346-475 564-680 (929)
161 PF12231 Rif1_N: Rap1-interact 97.6 0.1 2.2E-06 53.0 31.8 315 172-532 5-351 (372)
162 cd00256 VATPase_H VATPase_H, r 97.6 0.098 2.1E-06 53.0 27.2 312 115-447 102-424 (429)
163 KOG1525 Sister chromatid cohes 97.6 0.24 5.3E-06 57.0 37.5 369 77-477 47-441 (1266)
164 PF10274 ParcG: Parkin co-regu 97.6 0.0013 2.9E-08 57.0 12.0 93 376-468 36-132 (183)
165 KOG2933 Uncharacterized conser 97.6 0.003 6.5E-08 58.7 14.7 180 378-566 88-268 (334)
166 TIGR02270 conserved hypothetic 97.6 0.025 5.5E-07 57.3 22.7 241 118-447 54-295 (410)
167 PF02985 HEAT: HEAT repeat; I 97.6 0.00012 2.7E-09 43.1 3.8 30 379-408 1-30 (31)
168 KOG0413 Uncharacterized conser 97.5 0.2 4.4E-06 54.2 29.7 76 158-241 575-651 (1529)
169 KOG1525 Sister chromatid cohes 97.5 0.098 2.1E-06 60.0 28.4 348 201-575 44-405 (1266)
170 PF11864 DUF3384: Domain of un 97.5 0.19 4.1E-06 52.8 35.3 308 133-466 5-350 (464)
171 PF13001 Ecm29: Proteasome sta 97.5 0.13 2.8E-06 54.4 27.4 384 5-407 25-488 (501)
172 KOG1949 Uncharacterized conser 97.4 0.016 3.5E-07 59.9 18.8 138 9-147 180-331 (1005)
173 KOG4500 Rho/Rac GTPase guanine 97.4 0.14 3.1E-06 50.1 31.0 114 377-490 314-432 (604)
174 KOG1517 Guanine nucleotide bin 97.4 0.019 4.2E-07 62.1 19.8 145 350-494 570-737 (1387)
175 PF13251 DUF4042: Domain of un 97.4 0.0021 4.5E-08 56.4 10.7 142 94-238 1-177 (182)
176 PF13251 DUF4042: Domain of un 97.4 0.0023 5.1E-08 56.1 11.0 139 353-491 2-176 (182)
177 PF13001 Ecm29: Proteasome sta 97.3 0.3 6.5E-06 51.8 30.4 177 313-495 251-449 (501)
178 KOG1048 Neural adherens juncti 97.3 0.12 2.5E-06 55.0 23.2 327 116-450 230-643 (717)
179 PF12719 Cnd3: Nuclear condens 97.2 0.071 1.5E-06 52.3 21.1 169 337-512 26-208 (298)
180 PF11865 DUF3385: Domain of un 97.2 0.0043 9.4E-08 53.8 10.8 143 335-490 8-158 (160)
181 KOG2160 Armadillo/beta-catenin 97.2 0.23 5.1E-06 47.9 22.9 176 315-490 99-283 (342)
182 PF01603 B56: Protein phosphat 97.2 0.0098 2.1E-07 60.8 14.7 234 4-245 134-380 (409)
183 PF12719 Cnd3: Nuclear condens 97.2 0.11 2.5E-06 50.9 21.6 131 118-253 26-162 (298)
184 KOG4524 Uncharacterized conser 97.2 0.22 4.9E-06 54.1 24.5 97 335-431 801-901 (1014)
185 KOG0413 Uncharacterized conser 97.1 0.37 8.1E-06 52.3 25.5 108 79-188 577-684 (1529)
186 PF11865 DUF3385: Domain of un 97.0 0.0081 1.8E-07 52.1 10.7 147 376-533 8-157 (160)
187 PF08064 UME: UME (NUC010) dom 97.0 0.011 2.4E-07 47.2 10.6 95 414-510 6-105 (107)
188 KOG2025 Chromosome condensatio 97.0 0.58 1.3E-05 49.2 35.2 168 3-191 85-262 (892)
189 PF10521 DUF2454: Protein of u 97.0 0.021 4.6E-07 55.3 14.5 165 348-512 86-276 (282)
190 smart00802 UME Domain in UVSB 96.9 0.0075 1.6E-07 47.6 8.8 97 454-555 5-105 (107)
191 KOG2062 26S proteasome regulat 96.9 0.017 3.7E-07 60.1 13.4 152 341-512 523-676 (929)
192 PF02985 HEAT: HEAT repeat; I 96.9 0.0017 3.6E-08 38.2 3.8 30 670-699 1-30 (31)
193 COG5098 Chromosome condensatio 96.9 0.72 1.6E-05 48.3 38.5 107 81-190 302-416 (1128)
194 PF01603 B56: Protein phosphat 96.9 0.093 2E-06 53.8 18.6 227 212-449 139-371 (409)
195 PF08064 UME: UME (NUC010) dom 96.9 0.026 5.6E-07 45.1 11.5 99 370-470 3-106 (107)
196 PF03224 V-ATPase_H_N: V-ATPas 96.9 0.093 2E-06 52.0 18.2 196 34-239 54-273 (312)
197 COG5116 RPN2 26S proteasome re 96.8 0.011 2.3E-07 59.6 10.8 153 340-512 519-673 (926)
198 KOG1243 Protein kinase [Genera 96.8 0.034 7.3E-07 58.1 14.4 190 288-490 326-516 (690)
199 PF05536 Neurochondrin: Neuroc 96.8 1 2.2E-05 48.1 37.2 241 33-281 3-264 (543)
200 smart00802 UME Domain in UVSB 96.8 0.033 7.2E-07 44.0 11.0 98 370-469 3-105 (107)
201 PF05536 Neurochondrin: Neuroc 96.7 1.1 2.4E-05 47.9 35.0 238 117-369 4-264 (543)
202 KOG2149 Uncharacterized conser 96.7 0.053 1.1E-06 52.9 14.2 131 381-511 61-192 (393)
203 KOG0889 Histone acetyltransfer 96.7 3 6.4E-05 52.7 38.7 239 334-573 1030-1304(3550)
204 KOG0392 SNF2 family DNA-depend 96.7 0.022 4.7E-07 63.1 12.5 173 316-492 750-928 (1549)
205 KOG0567 HEAT repeat-containing 96.7 0.52 1.1E-05 43.3 19.4 114 352-495 171-286 (289)
206 KOG0946 ER-Golgi vesicle-tethe 96.6 1.3 2.8E-05 47.3 41.1 210 2-212 21-264 (970)
207 KOG1517 Guanine nucleotide bin 96.6 0.19 4.2E-06 55.0 18.5 115 337-451 599-735 (1387)
208 PF04118 Dopey_N: Dopey, N-ter 96.6 0.19 4.1E-06 48.7 16.9 212 348-569 22-248 (307)
209 PF10363 DUF2435: Protein of u 96.5 0.03 6.5E-07 43.0 9.2 85 338-430 4-88 (92)
210 PF04118 Dopey_N: Dopey, N-ter 96.5 0.69 1.5E-05 44.9 20.0 123 454-580 48-172 (307)
211 COG5098 Chromosome condensatio 96.4 1.7 3.6E-05 45.8 25.7 129 319-449 282-416 (1128)
212 KOG0567 HEAT repeat-containing 96.3 0.88 1.9E-05 41.9 20.9 91 338-448 188-280 (289)
213 PF12054 DUF3535: Domain of un 96.3 1.6 3.4E-05 45.3 22.7 310 351-673 101-440 (441)
214 COG5218 YCG1 Chromosome conden 96.2 1.8 3.9E-05 44.6 35.0 164 3-186 91-263 (885)
215 KOG4524 Uncharacterized conser 96.2 2.7 5.8E-05 46.3 40.9 284 397-701 567-879 (1014)
216 smart00638 LPD_N Lipoprotein N 96.1 1.7 3.7E-05 47.5 23.8 135 291-445 392-542 (574)
217 KOG1222 Kinesin associated pro 96.1 1.2 2.6E-05 44.6 19.3 95 353-447 279-373 (791)
218 KOG2025 Chromosome condensatio 96.1 2.5 5.4E-05 44.8 36.7 109 72-185 79-189 (892)
219 COG5231 VMA13 Vacuolar H+-ATPa 96.0 1.4 3E-05 41.7 22.9 271 115-407 146-428 (432)
220 PF01347 Vitellogenin_N: Lipop 96.0 1.6 3.5E-05 48.3 23.3 124 334-483 487-616 (618)
221 PF08767 CRM1_C: CRM1 C termin 96.0 1.1 2.4E-05 44.3 19.2 140 334-473 68-227 (319)
222 KOG3961 Uncharacterized conser 95.8 0.037 8E-07 48.4 7.2 94 417-510 112-208 (262)
223 KOG2549 Transcription initiati 95.8 0.32 7E-06 49.5 14.8 152 321-472 226-395 (576)
224 smart00638 LPD_N Lipoprotein N 95.8 0.84 1.8E-05 49.9 19.8 152 319-484 376-540 (574)
225 KOG1243 Protein kinase [Genera 95.8 0.26 5.6E-06 51.8 14.5 188 247-452 330-519 (690)
226 PF03224 V-ATPase_H_N: V-ATPas 95.8 0.18 4E-06 49.9 13.2 150 379-532 106-268 (312)
227 KOG1837 Uncharacterized conser 95.8 5.5 0.00012 46.5 28.8 119 459-585 1501-1621(1621)
228 PF10363 DUF2435: Protein of u 95.8 0.062 1.3E-06 41.3 7.6 74 379-453 4-77 (92)
229 KOG1837 Uncharacterized conser 95.7 5.7 0.00012 46.4 36.3 96 435-537 1520-1615(1621)
230 KOG1822 Uncharacterized conser 95.7 6.6 0.00014 46.9 44.0 299 393-697 799-1126(2067)
231 KOG2137 Protein kinase [Signal 95.6 1.2 2.5E-05 47.4 18.0 135 93-237 364-498 (700)
232 COG5116 RPN2 26S proteasome re 95.6 0.11 2.4E-06 52.6 10.3 115 346-474 561-676 (926)
233 KOG1949 Uncharacterized conser 95.5 4.3 9.3E-05 43.0 24.3 137 48-187 186-329 (1005)
234 PF01347 Vitellogenin_N: Lipop 95.3 0.42 9.2E-06 52.8 15.5 149 319-484 414-584 (618)
235 KOG2759 Vacuolar H+-ATPase V1 95.3 3.5 7.6E-05 40.9 23.4 71 377-448 365-438 (442)
236 cd03568 VHS_STAM VHS domain fa 95.2 0.71 1.5E-05 39.2 12.7 99 346-452 13-114 (144)
237 cd08050 TAF6 TATA Binding Prot 95.1 0.29 6.3E-06 48.8 12.0 129 371-512 175-320 (343)
238 KOG2137 Protein kinase [Signal 95.1 5.7 0.00012 42.5 22.7 173 288-471 345-519 (700)
239 COG5095 TAF6 Transcription ini 95.1 0.96 2.1E-05 42.2 13.9 149 371-532 194-358 (450)
240 PF10521 DUF2454: Protein of u 95.0 0.51 1.1E-05 45.8 13.1 146 114-260 115-278 (282)
241 cd08050 TAF6 TATA Binding Prot 94.9 0.18 3.9E-06 50.2 9.9 125 322-446 198-338 (343)
242 KOG2149 Uncharacterized conser 94.9 0.65 1.4E-05 45.6 13.1 133 339-471 60-193 (393)
243 KOG4199 Uncharacterized conser 94.9 3.8 8.2E-05 39.3 24.8 303 346-696 116-442 (461)
244 PF12231 Rif1_N: Rap1-interact 94.8 5.5 0.00012 40.5 27.8 236 313-580 60-308 (372)
245 COG5095 TAF6 Transcription ini 94.6 0.63 1.4E-05 43.3 11.4 96 353-448 252-359 (450)
246 PF08623 TIP120: TATA-binding 94.5 0.13 2.8E-06 44.4 6.5 80 389-471 38-117 (169)
247 COG5231 VMA13 Vacuolar H+-ATPa 94.4 4.7 0.0001 38.3 20.2 71 378-449 356-429 (432)
248 KOG0803 Predicted E3 ubiquitin 94.3 6.8 0.00015 45.9 21.3 111 338-448 42-153 (1312)
249 cd03568 VHS_STAM VHS domain fa 94.3 0.71 1.5E-05 39.2 10.6 76 418-493 36-114 (144)
250 PF14222 MOR2-PAG1_N: Cell mor 94.3 6.4 0.00014 42.1 20.0 324 81-410 132-503 (552)
251 PF00514 Arm: Armadillo/beta-c 94.2 0.097 2.1E-06 33.2 4.1 29 378-406 12-40 (41)
252 PF00514 Arm: Armadillo/beta-c 94.0 0.11 2.5E-06 32.8 4.1 30 418-447 11-40 (41)
253 KOG2549 Transcription initiati 93.9 7.5 0.00016 40.2 18.3 164 382-555 211-392 (576)
254 KOG0803 Predicted E3 ubiquitin 93.9 7.7 0.00017 45.5 20.7 91 158-253 40-130 (1312)
255 PF12074 DUF3554: Domain of un 93.8 8.2 0.00018 38.8 21.1 223 75-305 19-257 (339)
256 PF08569 Mo25: Mo25-like; Int 93.7 7.9 0.00017 38.4 21.2 184 49-237 89-285 (335)
257 PF08389 Xpo1: Exportin 1-like 93.6 1 2.2E-05 38.8 10.9 122 318-443 7-148 (148)
258 cd03567 VHS_GGA VHS domain fam 93.6 2.6 5.7E-05 35.5 12.6 98 346-451 14-119 (139)
259 PF12530 DUF3730: Protein of u 93.6 6.4 0.00014 36.9 20.8 194 13-220 11-217 (234)
260 PF14664 RICTOR_N: Rapamycin-i 93.3 10 0.00022 38.4 20.3 221 215-448 34-269 (371)
261 cd03561 VHS VHS domain family; 93.3 2.3 5E-05 35.7 11.9 86 378-463 37-129 (133)
262 PF08569 Mo25: Mo25-like; Int 93.1 10 0.00022 37.7 22.5 113 378-490 164-284 (335)
263 cd03569 VHS_Hrs_Vps27p VHS dom 93.1 2.2 4.7E-05 36.2 11.4 76 378-453 41-119 (142)
264 cd03561 VHS VHS domain family; 93.0 2.3 4.9E-05 35.8 11.5 77 418-494 36-117 (133)
265 KOG4199 Uncharacterized conser 92.9 9.3 0.0002 36.8 33.1 110 376-487 330-442 (461)
266 PF08623 TIP120: TATA-binding 92.7 0.77 1.7E-05 39.8 8.3 77 350-429 40-116 (169)
267 cd03569 VHS_Hrs_Vps27p VHS dom 92.7 1.5 3.3E-05 37.2 10.0 77 418-494 40-119 (142)
268 COG5218 YCG1 Chromosome conden 92.7 14 0.00031 38.4 40.9 106 74-184 87-194 (885)
269 cd03567 VHS_GGA VHS domain fam 92.6 1.9 4.1E-05 36.3 10.3 75 418-492 37-119 (139)
270 PF14664 RICTOR_N: Rapamycin-i 92.6 13 0.00028 37.6 19.3 220 9-238 31-272 (371)
271 PF12726 SEN1_N: SEN1 N termin 92.5 22 0.00048 40.1 32.4 157 79-238 78-246 (727)
272 PF09324 DUF1981: Domain of un 92.4 0.88 1.9E-05 34.6 7.4 69 158-231 16-84 (86)
273 KOG3961 Uncharacterized conser 91.9 0.4 8.8E-06 42.2 5.6 90 377-466 113-205 (262)
274 smart00288 VHS Domain present 91.5 6.6 0.00014 32.9 12.5 75 378-452 37-115 (133)
275 PF08161 NUC173: NUC173 domain 91.4 3.3 7.1E-05 37.4 11.1 193 465-697 5-198 (198)
276 PF11701 UNC45-central: Myosin 91.3 1.7 3.7E-05 37.7 9.1 130 313-444 19-155 (157)
277 PF11698 V-ATPase_H_C: V-ATPas 91.3 1.1 2.5E-05 36.0 7.1 70 378-448 43-115 (119)
278 KOG2973 Uncharacterized conser 91.3 14 0.0003 35.3 18.4 104 381-487 6-109 (353)
279 KOG1851 Uncharacterized conser 91.2 38 0.00083 40.1 35.0 183 392-582 1501-1685(1710)
280 KOG2038 CAATT-binding transcri 91.0 26 0.00057 37.9 30.7 108 156-277 301-408 (988)
281 PF00790 VHS: VHS domain; Int 91.0 2.5 5.4E-05 35.9 9.6 76 417-492 40-121 (140)
282 cd03565 VHS_Tom1 VHS domain fa 90.9 9 0.00019 32.5 12.6 112 346-465 14-133 (141)
283 smart00288 VHS Domain present 90.8 7.2 0.00016 32.7 12.0 93 443-537 21-115 (133)
284 PF11698 V-ATPase_H_C: V-ATPas 90.7 1.5 3.2E-05 35.4 7.2 74 158-235 42-115 (119)
285 KOG0946 ER-Golgi vesicle-tethe 90.6 29 0.00063 37.8 41.5 199 35-237 22-243 (970)
286 PF12530 DUF3730: Protein of u 90.4 16 0.00034 34.4 20.7 128 317-450 19-153 (234)
287 PF00790 VHS: VHS domain; Int 90.4 4.6 9.9E-05 34.3 10.7 95 442-537 25-122 (140)
288 PF12074 DUF3554: Domain of un 90.3 22 0.00047 35.8 24.1 211 290-511 20-254 (339)
289 PF12333 Ipi1_N: Rix1 complex 90.3 1.4 3.1E-05 34.8 6.9 62 370-431 3-65 (102)
290 PF04078 Rcd1: Cell differenti 90.0 17 0.00037 34.1 15.5 70 119-189 96-168 (262)
291 KOG1048 Neural adherens juncti 89.9 33 0.00072 37.4 24.7 394 3-447 233-683 (717)
292 PF12830 Nipped-B_C: Sister ch 89.9 14 0.00031 33.2 16.3 76 335-414 6-81 (187)
293 PF03542 Tuberin: Tuberin; In 89.9 12 0.00027 37.2 14.5 149 337-491 141-305 (356)
294 PF08161 NUC173: NUC173 domain 89.7 9.9 0.00021 34.4 12.7 59 354-412 17-75 (198)
295 PF12054 DUF3535: Domain of un 89.6 29 0.00062 36.2 19.1 80 313-392 101-182 (441)
296 PF14868 DUF4487: Domain of un 89.5 33 0.00071 36.7 23.9 83 328-410 470-555 (559)
297 PF08713 DNA_alkylation: DNA a 89.3 9.3 0.0002 35.3 12.9 76 336-417 119-194 (213)
298 KOG2199 Signal transducing ada 88.9 6.4 0.00014 38.5 11.2 101 344-452 19-122 (462)
299 KOG2122 Beta-catenin-binding p 88.9 57 0.0012 38.6 26.7 73 377-450 529-603 (2195)
300 PF12765 Cohesin_HEAT: HEAT re 86.9 1.1 2.3E-05 28.5 3.4 40 361-402 3-42 (42)
301 KOG3036 Protein involved in ce 86.8 26 0.00056 32.4 13.5 78 225-302 98-178 (293)
302 KOG2085 Serine/threonine prote 86.2 8.8 0.00019 38.1 10.5 104 137-246 318-425 (457)
303 PF08713 DNA_alkylation: DNA a 86.0 25 0.00055 32.4 13.8 152 18-191 34-186 (213)
304 KOG2213 Apoptosis inhibitor 5/ 85.9 39 0.00085 33.5 17.8 53 393-449 39-91 (460)
305 COG5369 Uncharacterized conser 85.8 2.1 4.6E-05 43.7 6.4 134 355-489 407-545 (743)
306 PF14668 RICTOR_V: Rapamycin-i 85.7 3.7 8E-05 29.9 6.0 56 353-409 3-60 (73)
307 PF14631 FancD2: Fanconi anaem 85.6 24 0.00052 42.6 15.9 140 369-512 426-565 (1426)
308 PF04388 Hamartin: Hamartin pr 85.6 21 0.00046 39.5 14.5 93 116-215 68-161 (668)
309 smart00185 ARM Armadillo/beta- 85.6 1.1 2.4E-05 28.1 3.1 29 419-447 12-40 (41)
310 PF12783 Sec7_N: Guanine nucle 85.3 24 0.00052 31.1 12.5 99 392-490 36-147 (168)
311 PF12765 Cohesin_HEAT: HEAT re 85.3 1.5 3.2E-05 27.9 3.4 41 651-693 2-42 (42)
312 smart00185 ARM Armadillo/beta- 84.9 1.4 3E-05 27.6 3.3 29 378-406 12-40 (41)
313 PF07571 DUF1546: Protein of u 84.8 4.1 8.8E-05 31.5 6.3 60 389-448 17-78 (92)
314 PF14225 MOR2-PAG1_C: Cell mor 84.8 37 0.00081 32.4 21.1 75 416-494 185-259 (262)
315 PF11919 DUF3437: Domain of un 84.8 1.2 2.7E-05 33.9 3.4 59 352-411 4-62 (90)
316 KOG0929 Guanine nucleotide exc 84.4 1E+02 0.0022 37.1 20.0 266 91-429 1049-1321(1514)
317 cd00197 VHS_ENTH_ANTH VHS, ENT 84.2 17 0.00037 29.5 10.2 72 334-405 34-113 (115)
318 KOG2973 Uncharacterized conser 83.9 11 0.00024 35.9 9.7 105 341-449 7-112 (353)
319 cd03565 VHS_Tom1 VHS domain fa 83.9 26 0.00055 29.7 11.9 81 457-537 35-119 (141)
320 PF11701 UNC45-central: Myosin 83.5 29 0.00063 30.1 12.1 141 37-186 5-156 (157)
321 PF11919 DUF3437: Domain of un 83.4 3.4 7.4E-05 31.5 5.3 55 644-699 5-59 (90)
322 PF04078 Rcd1: Cell differenti 83.3 41 0.00088 31.7 14.5 57 224-280 68-127 (262)
323 KOG2085 Serine/threonine prote 82.9 42 0.0009 33.6 13.4 211 378-596 177-393 (457)
324 PF07571 DUF1546: Protein of u 82.7 4.4 9.4E-05 31.3 5.7 60 348-407 17-78 (92)
325 KOG2256 Predicted protein invo 82.6 74 0.0016 34.1 20.3 201 392-594 256-475 (661)
326 KOG1877 Putative transmembrane 81.5 69 0.0015 35.6 15.8 105 346-450 65-176 (819)
327 PF11935 DUF3453: Domain of un 81.5 48 0.001 31.2 19.6 122 386-511 1-163 (239)
328 PF12783 Sec7_N: Guanine nucle 81.0 26 0.00057 30.8 11.0 98 352-449 37-147 (168)
329 PF11707 Npa1: Ribosome 60S bi 80.7 51 0.0011 32.9 14.1 150 339-488 58-236 (330)
330 cd03572 ENTH_epsin_related ENT 80.4 15 0.00033 30.0 8.2 74 458-531 36-117 (122)
331 PF09324 DUF1981: Domain of un 80.2 11 0.00025 28.6 7.2 68 117-185 16-84 (86)
332 PF04510 DUF577: Family of unk 80.1 16 0.00034 31.7 8.5 36 478-513 60-96 (174)
333 PF04388 Hamartin: Hamartin pr 80.0 45 0.00098 37.0 14.4 152 3-169 4-162 (668)
334 KOG2005 26S proteasome regulat 79.8 85 0.0018 33.8 15.0 62 379-446 641-702 (878)
335 PF08146 BP28CT: BP28CT (NUC21 79.6 15 0.00032 31.7 8.5 100 475-575 36-147 (153)
336 PF12333 Ipi1_N: Rix1 complex 79.6 9.2 0.0002 30.2 6.7 61 412-472 4-65 (102)
337 cd06561 AlkD_like A new struct 79.1 9.3 0.0002 34.8 7.8 74 340-418 108-181 (197)
338 PF14911 MMS22L_C: S-phase gen 78.9 76 0.0016 31.9 20.3 103 476-579 204-314 (373)
339 PF11935 DUF3453: Domain of un 78.4 61 0.0013 30.6 15.0 127 168-302 2-163 (239)
340 KOG3036 Protein involved in ce 77.9 59 0.0013 30.1 17.5 75 115-190 120-198 (293)
341 KOG2011 Sister chromatid cohes 77.7 1.2E+02 0.0026 35.0 16.6 133 128-274 297-431 (1048)
342 cd03572 ENTH_epsin_related ENT 77.6 36 0.00078 27.9 9.6 74 334-407 35-119 (122)
343 PF08146 BP28CT: BP28CT (NUC21 76.8 26 0.00057 30.2 9.2 78 520-597 37-118 (153)
344 PF12830 Nipped-B_C: Sister ch 75.7 61 0.0013 29.2 17.1 71 81-154 11-81 (187)
345 KOG3687 Tuberin - Rap/ran-GTPa 75.6 1.5E+02 0.0032 33.6 29.5 208 374-595 301-522 (1697)
346 PF14225 MOR2-PAG1_C: Cell mor 75.4 78 0.0017 30.3 17.8 165 415-597 60-238 (262)
347 PF11841 DUF3361: Domain of un 75.1 54 0.0012 28.3 11.0 97 354-452 34-135 (160)
348 KOG1848 Uncharacterized conser 75.1 1.9E+02 0.004 34.5 26.6 251 172-450 854-1134(1610)
349 PF10350 DUF2428: Putative dea 74.1 84 0.0018 30.0 13.4 129 376-504 94-243 (255)
350 KOG3687 Tuberin - Rap/ran-GTPa 73.3 1.7E+02 0.0037 33.2 27.9 50 389-438 484-533 (1697)
351 COG5101 CRM1 Importin beta-rel 72.8 1.4E+02 0.003 32.0 35.8 138 336-473 784-941 (1053)
352 KOG1087 Cytosolic sorting prot 70.2 74 0.0016 33.2 12.0 100 345-452 13-116 (470)
353 cd00197 VHS_ENTH_ANTH VHS, ENT 70.1 12 0.00027 30.3 5.5 62 655-717 24-85 (115)
354 KOG1087 Cytosolic sorting prot 69.9 54 0.0012 34.2 11.0 100 386-493 13-116 (470)
355 PF03130 HEAT_PBS: PBS lyase H 69.8 3.6 7.8E-05 23.1 1.6 14 394-407 1-14 (27)
356 KOG1848 Uncharacterized conser 69.0 2.5E+02 0.0055 33.5 28.5 153 91-243 854-1034(1610)
357 KOG2011 Sister chromatid cohes 68.5 2.3E+02 0.0051 32.8 17.5 126 354-481 262-391 (1048)
358 KOG0929 Guanine nucleotide exc 68.1 2.8E+02 0.0062 33.7 17.7 240 348-596 1048-1320(1514)
359 PF12726 SEN1_N: SEN1 N termin 68.0 2.2E+02 0.0047 32.3 37.0 202 70-286 34-251 (727)
360 cd06561 AlkD_like A new struct 67.9 94 0.002 28.1 11.9 75 381-460 108-182 (197)
361 COG5369 Uncharacterized conser 67.1 1.2E+02 0.0027 31.7 12.4 130 318-449 408-546 (743)
362 KOG1810 Cell cycle-associated 66.5 2.7E+02 0.0059 32.9 17.4 162 290-451 777-969 (1417)
363 KOG2199 Signal transducing ada 66.5 56 0.0012 32.5 9.6 97 388-492 22-121 (462)
364 KOG1789 Endocytosis protein RM 65.3 2.6E+02 0.0057 32.3 22.8 222 7-236 1816-2077(2235)
365 smart00567 EZ_HEAT E-Z type HE 64.6 11 0.00023 21.6 3.0 15 392-406 1-15 (30)
366 cd07064 AlkD_like_1 A new stru 64.5 59 0.0013 29.9 9.3 74 338-417 116-189 (208)
367 KOG3678 SARM protein (with ste 64.1 1.8E+02 0.0038 29.9 13.9 137 5-147 182-336 (832)
368 KOG1789 Endocytosis protein RM 64.1 2.8E+02 0.006 32.1 25.3 136 52-189 1741-1883(2235)
369 PF12397 U3snoRNP10: U3 small 63.3 44 0.00094 27.4 7.5 73 375-450 3-76 (121)
370 PF12612 TFCD_C: Tubulin foldi 62.9 1.2E+02 0.0025 27.5 10.8 134 352-490 22-159 (193)
371 PF14668 RICTOR_V: Rapamycin-i 62.7 25 0.00054 25.6 5.1 54 395-450 4-60 (73)
372 KOG1877 Putative transmembrane 62.0 1.1E+02 0.0023 34.3 11.7 156 375-532 14-173 (819)
373 PF12397 U3snoRNP10: U3 small 61.5 48 0.001 27.2 7.5 73 334-409 3-76 (121)
374 cd00872 PI3Ka_I Phosphoinositi 61.2 1.2E+02 0.0025 26.8 10.5 67 15-91 51-118 (171)
375 KOG2081 Nuclear transport regu 59.4 2.4E+02 0.0052 29.9 38.7 232 346-592 256-512 (559)
376 PF10350 DUF2428: Putative dea 59.2 1.7E+02 0.0036 28.0 11.9 59 415-473 185-253 (255)
377 PF11841 DUF3361: Domain of un 58.0 1.3E+02 0.0027 26.1 12.5 101 133-237 32-133 (160)
378 cd00864 PI3Ka Phosphoinositide 57.8 1.2E+02 0.0027 26.0 10.7 75 7-91 43-118 (152)
379 KOG2122 Beta-catenin-binding p 57.6 4.3E+02 0.0092 32.2 23.0 71 418-489 529-601 (2195)
380 PF14868 DUF4487: Domain of un 57.2 2.8E+02 0.0061 30.0 27.5 260 314-577 243-554 (559)
381 KOG2213 Apoptosis inhibitor 5/ 57.0 2.2E+02 0.0048 28.7 22.7 55 219-279 37-91 (460)
382 KOG1222 Kinesin associated pro 56.9 2.4E+02 0.0053 29.1 29.3 98 134-237 279-376 (791)
383 KOG4646 Uncharacterized conser 56.6 1.2E+02 0.0025 25.4 9.9 123 83-215 21-150 (173)
384 PF14222 MOR2-PAG1_N: Cell mor 55.5 3E+02 0.0066 29.8 33.5 409 70-492 27-503 (552)
385 COG5234 CIN1 Beta-tubulin fold 54.4 3.3E+02 0.0071 29.9 16.9 69 371-446 684-756 (993)
386 cd00870 PI3Ka_III Phosphoinosi 54.2 1.4E+02 0.003 26.2 9.3 66 16-91 59-125 (166)
387 PF14631 FancD2: Fanconi anaem 53.9 5.2E+02 0.011 32.0 33.7 145 288-441 431-576 (1426)
388 PF06685 DUF1186: Protein of u 53.1 2.1E+02 0.0045 27.1 16.4 83 417-512 109-196 (249)
389 PF14961 BROMI: Broad-minded p 52.5 1.2E+02 0.0025 35.5 10.4 86 81-166 164-251 (1296)
390 cd03562 CID CID (CTD-Interacti 51.9 1.3E+02 0.0027 24.3 9.2 87 390-485 17-104 (114)
391 COG4912 Predicted DNA alkylati 51.2 1.6E+02 0.0035 27.0 9.2 83 323-411 103-187 (222)
392 PF01417 ENTH: ENTH domain; I 51.0 1.4E+02 0.003 24.6 8.7 84 322-405 23-119 (125)
393 PF09759 Atx10homo_assoc: Spin 50.9 63 0.0014 25.5 5.9 57 354-411 3-63 (102)
394 COG5234 CIN1 Beta-tubulin fold 50.8 94 0.002 33.6 8.8 149 335-487 244-414 (993)
395 PF13925 Katanin_con80: con80 49.1 87 0.0019 27.4 7.3 57 91-151 41-102 (164)
396 KOG2842 Interferon-related pro 48.7 3E+02 0.0064 27.7 19.4 207 347-553 70-296 (427)
397 PF14228 MOR2-PAG1_mid: Cell m 48.4 5.5E+02 0.012 30.7 24.5 60 643-702 931-990 (1120)
398 PF05997 Nop52: Nucleolar prot 48.3 1.5E+02 0.0032 27.5 9.1 88 423-510 4-95 (217)
399 PF01465 GRIP: GRIP domain; I 47.9 58 0.0013 21.2 4.5 36 74-110 3-38 (46)
400 KOG2999 Regulator of Rac1, req 47.8 3.7E+02 0.008 28.6 12.6 145 5-152 85-247 (713)
401 PF06371 Drf_GBD: Diaphanous G 46.3 88 0.0019 28.0 7.4 58 349-406 128-186 (187)
402 PF12612 TFCD_C: Tubulin foldi 46.2 2.3E+02 0.0049 25.6 14.2 151 74-236 3-159 (193)
403 KOG2753 Uncharacterized conser 46.0 3E+02 0.0065 27.0 12.5 108 378-490 107-217 (378)
404 PF10193 Telomere_reg-2: Telom 44.0 93 0.002 25.2 6.2 65 432-499 18-89 (114)
405 smart00145 PI3Ka Phosphoinosit 43.7 2.4E+02 0.0052 25.3 10.5 43 40-90 79-122 (184)
406 PF11707 Npa1: Ribosome 60S bi 43.2 3.5E+02 0.0077 27.0 21.4 76 208-283 58-148 (330)
407 PF14961 BROMI: Broad-minded p 42.9 4.1E+02 0.0089 31.4 12.7 130 380-512 163-316 (1296)
408 PF07539 DRIM: Down-regulated 42.4 2.1E+02 0.0046 24.2 8.9 30 157-187 15-44 (141)
409 cd00872 PI3Ka_I Phosphoinositi 42.0 1.3E+02 0.0027 26.6 7.1 77 117-211 38-114 (171)
410 PF03542 Tuberin: Tuberin; In 41.2 3.9E+02 0.0085 27.0 18.3 168 78-256 141-328 (356)
411 PF04869 Uso1_p115_head: Uso1 41.1 3.2E+02 0.007 27.0 10.5 19 391-409 51-69 (312)
412 PF06786 UPF0253: Uncharacteri 41.0 1.2E+02 0.0026 21.0 5.1 51 649-699 5-61 (66)
413 PF14676 FANCI_S2: FANCI solen 40.7 2.4E+02 0.0053 24.5 8.6 105 117-232 54-158 (158)
414 smart00582 RPR domain present 39.3 2.1E+02 0.0045 23.3 9.2 60 384-452 6-65 (121)
415 PF10165 Ric8: Guanine nucleot 38.5 5E+02 0.011 27.4 22.7 42 172-213 44-85 (446)
416 PF11229 DUF3028: Protein of u 37.9 5.1E+02 0.011 27.3 17.1 193 35-238 97-309 (589)
417 PRK04964 hypothetical protein; 37.7 1.4E+02 0.003 20.7 5.1 51 649-699 5-61 (66)
418 PF00613 PI3Ka: Phosphoinositi 37.2 1.7E+02 0.0036 26.3 7.4 19 72-90 105-123 (184)
419 COG5537 IRR1 Cohesin [Cell div 36.9 5.7E+02 0.012 27.6 18.3 113 373-487 269-384 (740)
420 PF06685 DUF1186: Protein of u 36.3 3.8E+02 0.0083 25.4 15.0 41 463-503 114-159 (249)
421 PHA01351 putative minor struct 36.0 6.2E+02 0.013 27.7 13.8 8 493-500 133-140 (1070)
422 cd03571 ENTH_epsin ENTH domain 35.3 89 0.0019 25.7 4.9 53 102-154 21-75 (123)
423 COG5110 RPN1 26S proteasome re 34.7 5.9E+02 0.013 27.1 28.7 75 35-110 47-126 (881)
424 KOG2038 CAATT-binding transcri 34.4 7E+02 0.015 27.9 25.2 51 201-251 299-349 (988)
425 PF12243 CTK3: CTD kinase subu 32.7 3.1E+02 0.0066 23.2 10.5 78 383-469 13-93 (139)
426 PF08324 PUL: PUL domain; Int 32.7 4.5E+02 0.0098 25.2 11.7 100 348-447 121-230 (268)
427 smart00582 RPR domain present 32.5 2.7E+02 0.0059 22.6 10.4 37 156-193 29-65 (121)
428 cd00870 PI3Ka_III Phosphoinosi 32.3 2.2E+02 0.0047 25.0 7.1 77 117-211 45-121 (166)
429 KOG4646 Uncharacterized conser 32.3 3.1E+02 0.0066 23.1 9.6 68 378-447 58-127 (173)
430 PF10441 Urb2: Urb2/Npa2 famil 31.7 4.3E+02 0.0092 24.6 13.8 40 390-429 50-92 (223)
431 PF01417 ENTH: ENTH domain; I 30.9 88 0.0019 25.8 4.4 54 101-154 22-78 (125)
432 PF08620 RPAP1_C: RPAP1-like, 30.8 1E+02 0.0022 22.5 4.0 31 119-149 40-70 (73)
433 PF05327 RRN3: RNA polymerase 30.6 7.5E+02 0.016 27.1 13.6 196 306-509 3-213 (563)
434 COG4912 Predicted DNA alkylati 29.8 3.4E+02 0.0073 25.0 7.8 88 91-191 98-185 (222)
435 PF08158 NUC130_3NT: NUC130/3N 29.5 59 0.0013 21.9 2.4 41 656-696 6-46 (52)
436 cd07064 AlkD_like_1 A new stru 29.2 4.5E+02 0.0098 24.1 16.6 155 15-190 24-180 (208)
437 PF12031 DUF3518: Domain of un 28.5 1.3E+02 0.0027 28.1 5.1 80 290-369 107-205 (257)
438 smart00755 Grip golgin-97, Ran 28.2 1.5E+02 0.0032 19.4 4.0 34 75-110 3-36 (46)
439 smart00145 PI3Ka Phosphoinosit 27.8 3.1E+02 0.0068 24.5 7.5 78 116-211 42-119 (184)
440 cd00864 PI3Ka Phosphoinositide 27.6 3.1E+02 0.0068 23.6 7.2 77 117-211 38-114 (152)
441 COG5537 IRR1 Cohesin [Cell div 27.5 8.2E+02 0.018 26.5 33.3 105 126-236 283-387 (740)
442 COG5209 RCD1 Uncharacterized p 27.4 2E+02 0.0043 26.4 6.0 41 557-597 157-199 (315)
443 PF05997 Nop52: Nucleolar prot 27.1 5.1E+02 0.011 24.0 17.3 118 7-127 4-142 (217)
444 PF04869 Uso1_p115_head: Uso1 26.6 6.1E+02 0.013 25.1 9.9 32 36-67 35-69 (312)
445 PF09759 Atx10homo_assoc: Spin 26.6 2.1E+02 0.0045 22.7 5.3 60 177-238 3-62 (102)
446 cd03562 CID CID (CTD-Interacti 25.5 3.6E+02 0.0077 21.7 8.8 70 117-187 36-106 (114)
447 cd00869 PI3Ka_II Phosphoinosit 24.9 4.8E+02 0.01 23.0 10.3 11 32-42 36-46 (169)
448 PF12243 CTK3: CTD kinase subu 24.6 4.4E+02 0.0094 22.3 10.7 79 424-511 13-94 (139)
449 PF14663 RasGEF_N_2: Rapamycin 24.3 1.2E+02 0.0025 24.7 3.8 33 377-409 7-39 (115)
450 PF00613 PI3Ka: Phosphoinositi 24.0 1.6E+02 0.0034 26.4 5.0 78 115-211 42-120 (184)
451 PF06628 Catalase-rel: Catalas 23.9 2E+02 0.0043 20.7 4.5 40 67-106 16-55 (68)
452 KOG2753 Uncharacterized conser 23.6 7.2E+02 0.016 24.6 16.1 108 460-576 107-217 (378)
453 PF08158 NUC130_3NT: NUC130/3N 22.8 2.1E+02 0.0045 19.3 4.0 43 404-446 4-46 (52)
454 KOG2256 Predicted protein invo 22.6 1E+03 0.023 26.0 20.1 174 378-553 282-475 (661)
455 KOG4346 Uncharacterized conser 22.6 6.7E+02 0.014 27.6 9.5 113 419-537 508-622 (849)
456 KOG2005 26S proteasome regulat 22.2 1.1E+03 0.023 26.1 16.6 79 323-410 629-707 (878)
457 KOG3678 SARM protein (with ste 22.1 9E+02 0.02 25.1 18.6 64 346-409 273-338 (832)
458 PF10441 Urb2: Urb2/Npa2 famil 22.1 6.4E+02 0.014 23.4 11.9 73 438-510 7-88 (223)
459 PF06371 Drf_GBD: Diaphanous G 21.3 5.8E+02 0.013 22.6 9.6 59 389-447 127-186 (187)
460 COG5209 RCD1 Uncharacterized p 21.2 2E+02 0.0042 26.4 4.8 95 352-446 115-216 (315)
461 PF07539 DRIM: Down-regulated 21.1 2.3E+02 0.0049 24.1 5.1 30 377-406 16-45 (141)
462 PF14663 RasGEF_N_2: Rapamycin 20.1 2.4E+02 0.0052 22.9 4.8 36 5-40 10-45 (115)
No 1
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.2e-84 Score=667.71 Aligned_cols=695 Identities=38% Similarity=0.603 Sum_probs=621.0
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhcCCCHHHHHHHHH
Q 004960 2 AQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQ 81 (721)
Q Consensus 2 ~~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i~~ 81 (721)
.+.+.++++.+.|||+++|++||+.|+.....+.....|.+++.+..+|++|++|++++|+.+.++|+.++.+.++.||.
T Consensus 3 ~~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks 82 (1075)
T KOG2171|consen 3 SAPLEQLLQQLLSPDNEVRRQAEEALETLAKTEPLLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKS 82 (1075)
T ss_pred hhHHHHHHHHhcCCCchHHHHHHHHHHHhhcccchHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 46799999999999999999999999877766668899999998889999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccccHHHHH
Q 004960 82 SLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQ 161 (721)
Q Consensus 82 ~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~l~ 161 (721)
.++..+.+|+.+.||+++|++++.|++.+.|. .||++++.+++..+|+++..|+.|+.+|..+.+..++.+.+|++++.
T Consensus 83 ~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~ 161 (1075)
T KOG2171|consen 83 SLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLL 161 (1075)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHH
Confidence 99999999999999999999999999999996 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHhhhhcC-ChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcccc
Q 004960 162 ALLLKCLQDETSNRVRIAALKAIGSFLEFTN-DGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPL 240 (721)
Q Consensus 162 ~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~ 240 (721)
+++.++++| ++..||.+|+++++.++.+.+ +......++.++|.++..+.+.+++++.+....++++|.++++..|++
T Consensus 162 ~lf~q~~~d-~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~ 240 (1075)
T KOG2171|consen 162 RLFSQTMTD-PSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKL 240 (1075)
T ss_pred HHHHHhccC-CcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHH
Confidence 999999999 554599999999999998884 456678899999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhc-CChHHHHHHHHhhhccCCCC---------CCC
Q 004960 241 LGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKH-KLVIPILQVMCPLLAESNEA---------GED 310 (721)
Q Consensus 241 ~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~-~~~~~il~~l~~~l~~~~~~---------~~~ 310 (721)
+++++..++++++.+..++++++.+|..|++++..++++.|...++. .+..+++..++..+++.++| ++|
T Consensus 241 l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded 320 (1075)
T KOG2171|consen 241 LRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDED 320 (1075)
T ss_pred HHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccc
Confidence 99999999999999999999999999999999999999988877653 47788888888888876544 122
Q ss_pred CCCcHHHHHHHHHHHHHHHcC-ccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCC
Q 004960 311 DDLAPDRAAAEVIDTMALNLA-KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRD 389 (721)
Q Consensus 311 ~~~~~~~~a~~~l~~l~~~~~-~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d 389 (721)
+...+...|.++++.++..+| +.+++++++.+...+.|++|+.|+|++.+++.+++||.+.+...++++++.+++.++|
T Consensus 321 ~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~D 400 (1075)
T KOG2171|consen 321 DEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLND 400 (1075)
T ss_pred cccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCC
Confidence 335788999999999999998 7889999999999999999999999999999999999999999999999999999999
Q ss_pred CCHhHHHHHHHHHHHHHhhhhHHHHHhhhh-HHHHHHHhccCC-ChHHHHHHHHHHHHHHHhh-hhccccchHHHHH-HH
Q 004960 390 PEQFVRGAASFALGQFAEYLQPEIVSHYES-VLPCILNALEDE-SDEVKEKSYYALAAFCEDM-GEEILPFLDPLMG-KL 465 (721)
Q Consensus 390 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~-~l~~l~~~l~~~-~~~v~~~a~~al~~l~~~~-~~~~~~~~~~i~~-~l 465 (721)
++|+||++|+.++|++++.+.+.++++.++ +.|.|+..+.+. +++|+.+|+.++-++.+.+ ++.+.||++.+++ .+
T Consensus 401 phprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l 480 (1075)
T KOG2171|consen 401 PHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKL 480 (1075)
T ss_pred CCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999987755 455777777776 4689999999999999888 5678899999999 55
Q ss_pred HHhhcCCChhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHhccCchh-hhhHHHHHHHHHHHHHhhchhhccCCh
Q 004960 466 LAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDED-LRSRARATELLGLVAESVGRARMEPIL 544 (721)
Q Consensus 466 ~~~l~~~~~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~ 544 (721)
..+.+++.+.+++.++.+|++++.+.++.|.||++.++|.|.++++..++++ ..+|+++++|++.++.++|++.|.|+.
T Consensus 481 ~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a 560 (1075)
T KOG2171|consen 481 LLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLA 560 (1075)
T ss_pred HHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhH
Confidence 5555666899999999999999999999999999999999999999876544 568999999999999999999999999
Q ss_pred HHHHHHHHhc---cCCCChhhHHHHHHHHHHHHHHcccCcccchhhhHHHHHhhccCCCCCccCCCCCccccccCCCCCC
Q 004960 545 PPFVEAAISG---FGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVS 621 (721)
Q Consensus 545 ~~i~~~l~~~---l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (721)
.++++.+... ..+++...+++.+.+|+++|+.+|++|.||++.++|.+++.+..+++.. .+++++++......++.
T Consensus 561 ~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~-~~d~~d~e~~~~~~~~e 639 (1075)
T KOG2171|consen 561 EELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVA-LSDEEDEEEEQDLDGWE 639 (1075)
T ss_pred HHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCccc-CcCchhhhhccccccch
Confidence 9999999886 4455778899999999999999999999999999999999998876542 12333433333333321
Q ss_pred CCchhhhhcccc-ceeeecchhhhHHHHHHHHHHHHHHccccccchHHHHHH-HHHhcccCCChhHHHHHHHHHHHHHHH
Q 004960 622 SDDEAHCERSVR-NISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLK-ILVRHASYFHEDVRYQAVFALKNILTA 699 (721)
Q Consensus 622 ~~~~~~~~~~~~-~~~~~~~~~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~vr~~a~~~l~~l~~~ 699 (721)
..+...+ .++|+|+.+++|..|+..|+.++...+++|.||+++.++ .+..+..++++.||.+|+++++.++++
T Consensus 640 -----~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~ 714 (1075)
T KOG2171|consen 640 -----VVELGDKENIGIRTSVLDEKETACEALGEYAKELKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTC 714 (1075)
T ss_pred -----hhccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 1112223 688999999999999999999999999999999999999 455556789999999999999999999
Q ss_pred HHHhc
Q 004960 700 AHAIF 704 (721)
Q Consensus 700 ~~~~~ 704 (721)
.+..-
T Consensus 715 ~~~A~ 719 (1075)
T KOG2171|consen 715 ALKAC 719 (1075)
T ss_pred HHHHh
Confidence 98844
No 2
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.1e-62 Score=478.20 Aligned_cols=685 Identities=22% Similarity=0.349 Sum_probs=561.1
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHhcC--CCcHHHHHHHHhcC-CChhHHHHHHHHHHHhhh-----------hhhc
Q 004960 4 SLELLLIQFLMPDNDARRQAEDQIKRLAKD--PQVVPALVQHLRTA-KTPNVRQLAAVLLRKKIT-----------GHWA 69 (721)
Q Consensus 4 ~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~--p~~~~~l~~il~~~-~~~~vr~~a~~~l~~~i~-----------~~w~ 69 (721)
++.++|..+.|||+.+|++|+++|.++..+ |+|+..|.+++.++ .+...|..|+..|||.+. ++|-
T Consensus 2 ~~~~~le~tlSpD~n~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl 81 (859)
T KOG1241|consen 2 ELLELLEKTLSPDQNVRKRAEKQLEQAQSQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWL 81 (859)
T ss_pred cHHHHHHHHcCCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHH
Confidence 466788889999999999999999998865 79999999999984 688999999999999983 4799
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHH-HHHHHHHHHHHhhhh
Q 004960 70 KLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEE-HREVALILFSSLTET 148 (721)
Q Consensus 70 ~~~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~-~~~~al~~l~~i~~~ 148 (721)
+++.+.+++||+.++..|.+ +.+..++.++++++.||..+.|.+.||++++.+.....++.+. .+++++.++|.+|++
T Consensus 82 ~l~~e~reqVK~~il~tL~~-~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~ 160 (859)
T KOG1241|consen 82 QLPAEIREQVKNNILRTLGS-PEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICED 160 (859)
T ss_pred cCCHHHHHHHHHHHHHHcCC-CCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHcc
Confidence 99999999999999999996 7889999999999999999999999999999999999876654 889999999999998
Q ss_pred h-hhcccccHHHHHHHHHHhhC-CCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHH
Q 004960 149 I-GQTFRPHFADMQALLLKCLQ-DETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIA 226 (721)
Q Consensus 149 ~-~~~~~~~~~~l~~~l~~~l~-~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a 226 (721)
. ++.+....+.++..+..+.. .+++..||.+|+.+|.+.+++...++..+..++++.+.+. +..+.++.+++.+|
T Consensus 161 i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvc---Eatq~~d~~i~~aa 237 (859)
T KOG1241|consen 161 IDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVC---EATQSPDEEIQVAA 237 (859)
T ss_pred CCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeee---ecccCCcHHHHHHH
Confidence 7 45556677788777666664 4478899999999999999988766665556777666655 35667899999999
Q ss_pred HHHHHHHhcCcccchhhhHHH-HHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHh-------hhhh--c--------C
Q 004960 227 FEIFDELIESPAPLLGDSVKS-IVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYN-------SLKK--H--------K 288 (721)
Q Consensus 227 ~~~l~~l~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~-------~~~~--~--------~ 288 (721)
+.||.+++...+.++.++... ++...+..+.+. ++++..++++||+++++-.-+ ...+ + .
T Consensus 238 ~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~--~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~ 315 (859)
T KOG1241|consen 238 FQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSD--NDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQ 315 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHH
Confidence 999999999999988888766 667666666644 789999999999998864322 1110 0 1
Q ss_pred ChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcCccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhcc
Q 004960 289 LVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGC 368 (721)
Q Consensus 289 ~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~ 368 (721)
-++.++|.++..|...++++++|+|++.++|..||..+++..++.+++++++++.+.+++++|+.|++|..+||++.++.
T Consensus 316 a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp 395 (859)
T KOG1241|consen 316 ALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGP 395 (859)
T ss_pred HHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCC
Confidence 13367888999999989999999999999999999999999999999999999999999999999999999999999885
Q ss_pred -HHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHH--HhhhhHHHHHHHhccCCChHHHHHHHHHHHH
Q 004960 369 -AEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIV--SHYESVLPCILNALEDESDEVKEKSYYALAA 445 (721)
Q Consensus 369 -~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~ 445 (721)
++.+.+..++.+|.++..+.|++..||.++.|++|+++++++.... .+++..++.++++|+|. ++|..++||++..
T Consensus 396 ~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~De-Prva~N~CWAf~~ 474 (859)
T KOG1241|consen 396 EPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDE-PRVASNVCWAFIS 474 (859)
T ss_pred chhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhC-chHHHHHHHHHHH
Confidence 5677888899999999999999999999999999999999986544 47889999999999987 7899999999999
Q ss_pred HHHhhhh---------ccccchHHHHHHHHHhhcC---CChhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHH----HHH
Q 004960 446 FCEDMGE---------EILPFLDPLMGKLLAALEN---SPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELL----KIF 509 (721)
Q Consensus 446 l~~~~~~---------~~~~~~~~i~~~l~~~l~~---~~~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~~l----~~~ 509 (721)
+++...+ ...|+++.|+..|++.-.. ++.++|..++++++.++...++...+....+.+.+ .+.
T Consensus 475 Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~ 554 (859)
T KOG1241|consen 475 LAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQT 554 (859)
T ss_pred HHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9987631 2347899999999988765 35789999999999999998887766554444433 333
Q ss_pred Hhc--c--Cchh--hhhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCC-CChhhHHHHHHHHHHHHHHcccCcc
Q 004960 510 MVL--T--NDED--LRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGL-EFSELREYTHGFFSNIAGVLEDGFA 582 (721)
Q Consensus 510 l~~--~--~~~~--~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~-~~~~~~~~~~~~l~~l~~~~~~~~~ 582 (721)
++. . .+.. ..+.+....+++.+.+.+++ .+.++.+++|..+++.++. ++.-+.+.++.+++.++..+|.+|.
T Consensus 555 i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~-~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~ 633 (859)
T KOG1241|consen 555 ISSQILSLADRAQLNELQSLLCNTLQSIIRKVGS-DIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFA 633 (859)
T ss_pred HHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccc-cchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHH
Confidence 331 0 1111 23556667888888888887 8889999999999999987 4666889999999999999999999
Q ss_pred cchhhhHHHHHhhcc-CCC--------CCccCCCCCccccccCCCCCCCCchhhhhccccceeeecchhhhHHHHHHHHH
Q 004960 583 QYLPLVVPLAFSSCN-LDD--------GSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALG 653 (721)
Q Consensus 583 ~~l~~i~~~ll~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~ 653 (721)
.|+|.+.|+|...++ ..+ |-+.|+.+..++++.+|+. +-|..+.+.++-.+...++|...+.+||
T Consensus 634 kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d------~~mt~Lvq~Lss~~~hR~vKP~IlS~Fg 707 (859)
T KOG1241|consen 634 KYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCD------ELMTVLVQCLSSPNLHRNVKPAILSVFG 707 (859)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHH------HHHHHHHHHccCccccccccchHHHHHH
Confidence 999999999998873 222 2223455555555555553 2244455554445555689999999999
Q ss_pred HHHHHccccccchHHHHHHHHHhccc---CC--------ChhHHHHHHHHHHHHHHHHHH
Q 004960 654 LFALHTKSSYAPFLEESLKILVRHAS---YF--------HEDVRYQAVFALKNILTAAHA 702 (721)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~l~~~~~---~~--------~~~vr~~a~~~l~~l~~~~~~ 702 (721)
+|+.+.|..|.||++.+++.+...-+ ++ -+++|+.++++-.-++-..+.
T Consensus 708 DIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~ 767 (859)
T KOG1241|consen 708 DIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKT 767 (859)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999988752 11 257888888877777666663
No 3
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.8e-62 Score=470.02 Aligned_cols=651 Identities=19% Similarity=0.285 Sum_probs=547.8
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCcHHHHHHHHhc--CCChhHHHHHHHHHHHhhhhhhcCCCHHHHHHHH
Q 004960 3 QSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRT--AKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVK 80 (721)
Q Consensus 3 ~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~p~~~~~l~~il~~--~~~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i~ 80 (721)
+++.++|+..+|||+++|+.+...+.++...|+|..+|..++.+ +.+..+|..|+.+|||.++.+|..++++.+.++|
T Consensus 13 ~ql~~lLk~s~Spn~~~~~~~~~~leq~~~~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~yiK 92 (885)
T KOG2023|consen 13 QQLAQLLKNSQSPNSETRNNVQEKLEQFNLFPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSEVLDYIK 92 (885)
T ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHHhcccchhceeeEEEecccccchhHHHHhhhhHhccccccccCCChHHHHHHH
Confidence 67889999999999999999999999999999999999999876 4578889999999999999999999999999999
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhccc-----c
Q 004960 81 QSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFR-----P 155 (721)
Q Consensus 81 ~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~-----~ 155 (721)
..+++++. ++++.+|...+.++..|++...- ..||+++|.|.+++.+++.+..++|+.++..|+++..+.+. .
T Consensus 93 s~~l~~lg-d~~~lIr~tvGivITTI~s~~~~-~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~r 170 (885)
T KOG2023|consen 93 SECLHGLG-DASPLIRATVGIVITTIASTGGL-QHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTR 170 (885)
T ss_pred HHHHhhcc-CchHHHHhhhhheeeeeeccccc-ccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccC
Confidence 99999999 58899999999999999987655 38999999999999999999999999999999999865543 4
Q ss_pred cHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 004960 156 HFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIE 235 (721)
Q Consensus 156 ~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~ 235 (721)
-++-++|.++++.++ +++.+|..|+.|+..++-..... +...+..+++.++....++++++|+..|..+.-+.+
T Consensus 171 pl~~mipkfl~f~~h-~spkiRs~A~~cvNq~i~~~~qa-----l~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Lle 244 (885)
T KOG2023|consen 171 PLNIMIPKFLQFFKH-PSPKIRSHAVGCVNQFIIIQTQA-----LYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLE 244 (885)
T ss_pred chHHhHHHHHHHHhC-CChhHHHHHHhhhhheeecCcHH-----HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 567889999999999 89999999999999987665333 333455666666667788999999999999999999
Q ss_pred CcccchhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhH--hhhhhcCChHHHHHHHHhhhccCCCC------
Q 004960 236 SPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKY--NSLKKHKLVIPILQVMCPLLAESNEA------ 307 (721)
Q Consensus 236 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~--~~~~~~~~~~~il~~l~~~l~~~~~~------ 307 (721)
..+..+.+++++++++|+...++. ++++-..|.+||.++++..- ..+. +|++.+++.++..|.+.++|
T Consensus 245 vr~dkl~phl~~IveyML~~tqd~--dE~VALEACEFwla~aeqpi~~~~L~--p~l~kliPvLl~~M~Ysd~D~~LL~~ 320 (885)
T KOG2023|consen 245 VRPDKLVPHLDNIVEYMLQRTQDV--DENVALEACEFWLALAEQPICKEVLQ--PYLDKLIPVLLSGMVYSDDDIILLKN 320 (885)
T ss_pred hcHHhcccchHHHHHHHHHHccCc--chhHHHHHHHHHHHHhcCcCcHHHHH--HHHHHHHHHHHccCccccccHHHhcC
Confidence 999999999999999999876655 67799999999999997541 1122 56778888887655432110
Q ss_pred ---------------------------------CC------CC----CCcHHHHHHHHHHHHHHHcCccccHhHHHHHHh
Q 004960 308 ---------------------------------GE------DD----DLAPDRAAAEVIDTMALNLAKHVFPPVFEFASV 344 (721)
Q Consensus 308 ---------------------------------~~------~~----~~~~~~~a~~~l~~l~~~~~~~~~~~i~~~l~~ 344 (721)
++ || +|+.|++++.+++.+++.+++++++.++|.+.+
T Consensus 321 ~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~ 400 (885)
T KOG2023|consen 321 NEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKE 400 (885)
T ss_pred ccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 00 11 399999999999999999999999999999999
Q ss_pred hhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHH-HHHhhhhHHHH
Q 004960 345 SCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPE-IVSHYESVLPC 423 (721)
Q Consensus 345 ~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~~l~~ 423 (721)
.+.+++|..|++++.++|+|++||.+.+.++++.++|.++++|+|..|.||..+||+|++++.+.-.. -.+|+.+++..
T Consensus 401 ~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ 480 (885)
T KOG2023|consen 401 HLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEG 480 (885)
T ss_pred HcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999987543 33689999999
Q ss_pred HHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhcch--hhHHH
Q 004960 424 ILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFI--PYAER 501 (721)
Q Consensus 424 l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~~~~--~~~~~ 501 (721)
+++.+-|.+.+|+++||.|+..+-+..++.+.||+..|++.+...++.....--.-...|+|+++...|.... .|++.
T Consensus 481 ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~Yiqi 560 (885)
T KOG2023|consen 481 LLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQI 560 (885)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 9999999999999999999999999999999999999999999999887655455678999999999997765 48999
Q ss_pred HHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhccCChH------------------------------------
Q 004960 502 VLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILP------------------------------------ 545 (721)
Q Consensus 502 i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~------------------------------------ 545 (721)
++|.|.+-++.-+++|.++ -..++|++.++.++|. .|.||.+
T Consensus 561 LmPPLi~KW~~lsd~DKdL-fPLLEClSsia~AL~~-gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~ 638 (885)
T KOG2023|consen 561 LMPPLIEKWELLSDSDKDL-FPLLECLSSIASALGV-GFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIV 638 (885)
T ss_pred hccHHHHHHHhcCcccchH-HHHHHHHHHHHHHHhc-cccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEE
Confidence 9998888877655554443 2457777777776653 4444332
Q ss_pred -----------------------HHHHHHHhccCCCChhhHHHHHHHHHHHHHHcccCcccchhhhHHHHHhhccCCCCC
Q 004960 546 -----------------------PFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGS 602 (721)
Q Consensus 546 -----------------------~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~ 602 (721)
.+++.++.+++|+.++||++++..+|.+++.+.+...|++..++|.+...+.. .
T Consensus 639 sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~--~- 715 (885)
T KOG2023|consen 639 SLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNP--E- 715 (885)
T ss_pred eHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCCh--h-
Confidence 25556667778888999999999999999999999999999999998732211 0
Q ss_pred ccCCCCCccccccCCCCCCCCchhhhhccccceeeecchhhhHHHHHHHHHHHHHHccccccchHHHHHHHHHhcccC--
Q 004960 603 AVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVRHASY-- 680 (721)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 680 (721)
....--+|+|++|+++...+....+|+..++.-|...++.
T Consensus 716 --------------------------------------~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~ 757 (885)
T KOG2023|consen 716 --------------------------------------NISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQN 757 (885)
T ss_pred --------------------------------------hchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccC
Confidence 0122367999999999999999999999988888887664
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhcccCC
Q 004960 681 FHEDVRYQAVFALKNILTAAHAIFQSHN 708 (721)
Q Consensus 681 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 708 (721)
....+-+..+-++|++=..++....+|.
T Consensus 758 ~~~tllENtAITIGrLg~~~Pe~vAp~l 785 (885)
T KOG2023|consen 758 TPKTLLENTAITIGRLGYICPEEVAPHL 785 (885)
T ss_pred chHHHHHhhhhhhhhhhccCHHhcchhH
Confidence 4567888888888888776666655543
No 4
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=100.00 E-value=2.4e-52 Score=397.80 Aligned_cols=676 Identities=19% Similarity=0.256 Sum_probs=523.2
Q ss_pred HHHHHHHHh-cCCChHHHHHHHHHHHHHhcCC--CcHHHHHHHHhc-CCChhHHHHHHHHHHHhhh-----------hhh
Q 004960 4 SLELLLIQF-LMPDNDARRQAEDQIKRLAKDP--QVVPALVQHLRT-AKTPNVRQLAAVLLRKKIT-----------GHW 68 (721)
Q Consensus 4 ~l~~ll~~~-~s~d~~~r~~A~~~L~~~~~~p--~~~~~l~~il~~-~~~~~vr~~a~~~l~~~i~-----------~~w 68 (721)
++..+.++. +|||+..|..||.+|.++..+. +|+..+.+.+.+ +++++.|..|++.|||.+. +.|
T Consensus 5 ef~~l~~n~vLspD~n~rl~aE~ql~~l~~~dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW 84 (858)
T COG5215 5 EFRCLGKNHVLSPDPNARLRAEAQLLELQSGDFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRW 84 (858)
T ss_pred HHHHHHhcccCCCCCCccccHHHHHHHhccccHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhh
Confidence 445555553 8999999999999999999764 788999999988 5789999999999999984 479
Q ss_pred cCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcH-HHHHHHHHHHHHhhh
Q 004960 69 AKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQE-EHREVALILFSSLTE 147 (721)
Q Consensus 69 ~~~~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~-~~~~~al~~l~~i~~ 147 (721)
-.+++|.++++|...++.|.+ +.+...+.+++.++.|++.+.|.+.||+++..+.....++.+ ..+..++.+++..|+
T Consensus 85 ~~~~~E~k~qvK~~al~aL~s-~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ce 163 (858)
T COG5215 85 LGMRHESKEQVKGMALRALKS-PEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCE 163 (858)
T ss_pred ccCCHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhh
Confidence 999999999999999999997 899999999999999999999999999999999999877655 567799999999998
Q ss_pred hhh-hcccccHHHH-HHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHH
Q 004960 148 TIG-QTFRPHFADM-QALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVI 225 (721)
Q Consensus 148 ~~~-~~~~~~~~~l-~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~ 225 (721)
... +.+....+.+ +.++...++.+++..||.+|+++|..-+.+...+...+..++++.+.+. +..+.++.+++..
T Consensus 164 s~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvc---eatq~~d~e~q~a 240 (858)
T COG5215 164 SEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVC---EATQGNDEELQHA 240 (858)
T ss_pred ccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeee---hhccCCcHHHHHH
Confidence 763 3444444444 4666777777689999999999999865555444444444566555444 3567789999999
Q ss_pred HHHHHHHHhcCcccchhhhHHHHHH-HHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhh------h-----hhcCC----
Q 004960 226 AFEIFDELIESPAPLLGDSVKSIVH-FSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNS------L-----KKHKL---- 289 (721)
Q Consensus 226 a~~~l~~l~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~------~-----~~~~~---- 289 (721)
++.|+.+++...+.+++.++++.+- ...+.+.+. ++++..+++++|+.+++..-+. + +.+.|
T Consensus 241 afgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~--nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aa 318 (858)
T COG5215 241 AFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQ--NDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAA 318 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--chHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHH
Confidence 9999999999988888888776543 334444444 7889999999999988643211 1 11122
Q ss_pred hHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcCccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccH
Q 004960 290 VIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCA 369 (721)
Q Consensus 290 ~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~ 369 (721)
+..++|.++.+|...++|.++|+|++..+|..||..+++..|+.++.+++.++.+.+.+++|..|++|..++|++.++..
T Consensus 319 v~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~ 398 (858)
T COG5215 319 VADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPC 398 (858)
T ss_pred HHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCcc
Confidence 45588999999999999999999999999999999999999999999999999999999999999999999999998854
Q ss_pred -HHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHH--hhhhHHHHHHHhccCCChHHHHHHHHHHHHH
Q 004960 370 -EWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVS--HYESVLPCILNALEDESDEVKEKSYYALAAF 446 (721)
Q Consensus 370 -~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~--~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l 446 (721)
.-..+++++.+|.+...+.|+..-|+..++||+|.++.+.+..+.+ |+...+.+.+.++.|. +++..+++|...++
T Consensus 399 ~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~-p~~~~ncsw~~~nl 477 (858)
T COG5215 399 EDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMDC-PFRSINCSWRKENL 477 (858)
T ss_pred HHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhcc-chHHhhhHHHHHhH
Confidence 4556778999999999999999999999999999999998776654 7888899999998886 67888999999999
Q ss_pred HHhhhh-------ccccchHHHHHHHHHhhc--CCChhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHH----HHHHhcc
Q 004960 447 CEDMGE-------EILPFLDPLMGKLLAALE--NSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELL----KIFMVLT 513 (721)
Q Consensus 447 ~~~~~~-------~~~~~~~~i~~~l~~~l~--~~~~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~~l----~~~l~~~ 513 (721)
+....+ .+.+++..|+..|++.-+ .++.+.|...+++++.++..+++...+.+-.+..+. .+.+...
T Consensus 478 v~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~ 557 (858)
T COG5215 478 VDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVL 557 (858)
T ss_pred HHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 988743 345778888888887643 346788999999999999988876665444444333 3322211
Q ss_pred ----Cchhh----hhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCC-ChhhHHHHHHHHHHHHHHcccCcccc
Q 004960 514 ----NDEDL----RSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLE-FSELREYTHGFFSNIAGVLEDGFAQY 584 (721)
Q Consensus 514 ----~~~~~----~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~ 584 (721)
..+|. ++.+..+..+..+.+..++ .+.+..+++|..+++.++.. ...+...++.+++.++..+|+.|..|
T Consensus 558 ~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~-~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y 636 (858)
T COG5215 558 GQILATEDQLLVEELQSNYIGVLEAIIRTRRR-DIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQY 636 (858)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCC-CcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 11121 2334444555555544443 56677788999999999876 44466779999999999999999999
Q ss_pred hhhhHHHHHhhccCCCCC--------ccCCCCCccccccCCCCCCCCchhhhhccccceeeecchhhhHHHHHHHHHHHH
Q 004960 585 LPLVVPLAFSSCNLDDGS--------AVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFA 656 (721)
Q Consensus 585 l~~i~~~ll~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~ 656 (721)
+++++|++.++++..+.. +.++.+..++++..|+.+ -|..+.+.++-.....+.|...+.+||+|+
T Consensus 637 ~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y~d~------~ms~LvQ~lss~~~~R~lKPaiLSvFgDIA 710 (858)
T COG5215 637 ASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIYADV------LMSSLVQCLSSEATHRDLKPAILSVFGDIA 710 (858)
T ss_pred HhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHH------HHHHHHHHhcChhhccccchHHHHHHHHHH
Confidence 999999999998654421 123333334443333321 133344443333445588999999999999
Q ss_pred HHccccccchHHHHHHHHHhccc--C-----CChhHHHHHHHHH
Q 004960 657 LHTKSSYAPFLEESLKILVRHAS--Y-----FHEDVRYQAVFAL 693 (721)
Q Consensus 657 ~~~~~~~~~~~~~~~~~l~~~~~--~-----~~~~vr~~a~~~l 693 (721)
.+.|..|.+|++.++-.++...+ - ...+-|+.+...+
T Consensus 711 laiga~F~~YL~~im~L~qqas~~~p~~~~~~~~dy~~~~~~~v 754 (858)
T COG5215 711 LAIGANFESYLDMIMMLFQQASELDPHSDEVYVDDYRKNAVQLV 754 (858)
T ss_pred HHHhhhHHHHHHHHHHHHHHHhccCCCCCceeHHHHHHHHHHHH
Confidence 99999999999999998888743 1 1245566665543
No 5
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-36 Score=311.08 Aligned_cols=670 Identities=19% Similarity=0.261 Sum_probs=459.0
Q ss_pred ChhHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCcHHHHHHHHhcC-CChhHHHHHHHHHHHhhhhhhcC---------
Q 004960 1 MAQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTA-KTPNVRQLAAVLLRKKITGHWAK--------- 70 (721)
Q Consensus 1 m~~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~-~~~~vr~~a~~~l~~~i~~~w~~--------- 70 (721)
|.+++.+++.++.++|+..|+.||++|+++++.|+|+..|++|+.++ .+..||+.|+++|||.|.+.|+.
T Consensus 2 d~~~l~~~~~~T~d~d~~~R~~AE~~L~q~~K~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~ 81 (1010)
T KOG1991|consen 2 DLQSLLQIFRATIDSDAKERKAAEQQLNQLEKQPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPFG 81 (1010)
T ss_pred ChHHHHHHHHHhcCCChHHHHHHHHHHHHhhcCCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcCC
Confidence 56789999999999999999999999999999999999999999885 57888999999999999999985
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhh
Q 004960 71 LSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIG 150 (721)
Q Consensus 71 ~~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~ 150 (721)
++++.+..||++++..+.+ .+..+|.++..++..|...++| ++||++++.+...+++++.....+|+.|+..+++...
T Consensus 82 I~e~dk~~irenIl~~iv~-~p~~iRvql~~~l~~Ii~~D~p-~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye 159 (1010)
T KOG1991|consen 82 IPEEDKAVIRENILETIVQ-VPELIRVQLTACLNTIIKADYP-EQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYE 159 (1010)
T ss_pred CChHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHhcCCc-ccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHh
Confidence 5789999999999999997 6889999999999999999999 5999999999999999999999999999999998652
Q ss_pred -----------hcccccHHHHHHHHHHhhCCCCCHH---HHHHHHHHHHHhhhhcCChhh---HHHHHhhHHHHHHHHHH
Q 004960 151 -----------QTFRPHFADMQALLLKCLQDETSNR---VRIAALKAIGSFLEFTNDGAE---VVKFREFIPSILNVSRQ 213 (721)
Q Consensus 151 -----------~~~~~~~~~l~~~l~~~l~~~~~~~---vr~~a~~~l~~l~~~~~~~~~---~~~~~~~l~~ll~~l~~ 213 (721)
..+...++.++..+.+++.+ ++.+ .....++....++.+. -+.. ...+...+...+.++.+
T Consensus 160 ~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~-~s~~s~el~klIlKifks~~~~~-LP~~L~~~~~f~~W~~l~l~i~~r 237 (1010)
T KOG1991|consen 160 WKKDEERQPLGEAVEELFPDILQIFNGLLSQ-ESYQSVELQKLILKIFKSLIYYE-LPLELSAPETFTSWMELFLSILNR 237 (1010)
T ss_pred hccccccccHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHHHHHHHh-CCHHhhCchhHHHHHHHHHHHHcC
Confidence 12334456667777777776 4433 3344555555544432 1111 11223333333333222
Q ss_pred Hhhc----CC---------HHHHHHHHHHHHHHhcCccc--------------chhhhHHHHHHHHHH----hhcCCCCC
Q 004960 214 CLAS----GE---------EDVAVIAFEIFDELIESPAP--------------LLGDSVKSIVHFSLE----VSSSHNLE 262 (721)
Q Consensus 214 ~l~~----~~---------~~~~~~a~~~l~~l~~~~~~--------------~~~~~~~~l~~~~~~----~~~~~~~~ 262 (721)
-+.. -+ ++..++|+..+.++.+..+. ++..+++.+++..++ +-+..+++
T Consensus 238 pvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls 317 (1010)
T KOG1991|consen 238 PVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLS 317 (1010)
T ss_pred CCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 1110 12 24578999999998765321 223444444444443 33445678
Q ss_pred hHHHHHHHHHHHHHHHHhHhhhhhcCChHH-HHHHHHhhhccCCCCCC-----------------CCCCcHHHHHHHHHH
Q 004960 263 PNTRHQAIQIISWLAKYKYNSLKKHKLVIP-ILQVMCPLLAESNEAGE-----------------DDDLAPDRAAAEVID 324 (721)
Q Consensus 263 ~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~-il~~l~~~l~~~~~~~~-----------------~~~~~~~~~a~~~l~ 324 (721)
+.+-..++.++..++..+..+-.-.+.+.. +...++|+|+..++|++ +|..+++.+|..++.
T Consensus 318 ~rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~ 397 (1010)
T KOG1991|consen 318 DRVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLT 397 (1010)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHH
Confidence 889999999999998765543111122444 44678999998776542 455788899999999
Q ss_pred HHHHHcCccccHhHHHHHHhhhc--------CCChhhHhHHHHHHHHHhhccH--HHHHHhHHH-HHHHHHhhcCCCCHh
Q 004960 325 TMALNLAKHVFPPVFEFASVSCQ--------NASPKYREAAVTAIGIISEGCA--EWMKEKLES-VLHIVLGALRDPEQF 393 (721)
Q Consensus 325 ~l~~~~~~~~~~~i~~~l~~~l~--------~~~~~~r~~al~~l~~i~~~~~--~~~~~~l~~-i~~~l~~~l~d~~~~ 393 (721)
.++...|++.++.+++++.+.+. ..+.+.+++|+.++|++++... ..++..++. +++.+++.++++...
T Consensus 398 ~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~ 477 (1010)
T KOG1991|consen 398 TLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGY 477 (1010)
T ss_pred HHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhH
Confidence 99999999999999999888765 2468899999999999997643 344455544 457899999999999
Q ss_pred HHHHHHHHHHHHH-hhhhHHHHHhhhhHHHHHHHhcc-CCChHHHHHHHHHHHHHHHhhh---hccccchHHHHHHHHHh
Q 004960 394 VRGAASFALGQFA-EYLQPEIVSHYESVLPCILNALE-DESDEVKEKSYYALAAFCEDMG---EEILPFLDPLMGKLLAA 468 (721)
Q Consensus 394 vr~~a~~~l~~l~-~~~~~~~~~~~~~~l~~l~~~l~-~~~~~v~~~a~~al~~l~~~~~---~~~~~~~~~i~~~l~~~ 468 (721)
.|..|||.++.++ ..+++ ...+...+....+.|. |.+-.||..|+-||..++.+.. +.+.++++++++.|+.+
T Consensus 478 Lrarac~vl~~~~~~df~d--~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L 555 (1010)
T KOG1991|consen 478 LRARACWVLSQFSSIDFKD--PNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKL 555 (1010)
T ss_pred HHHHHHHHHHHHHhccCCC--hHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHH
Confidence 9999999999999 45543 2345667777777777 6677899999999999999885 45889999999999999
Q ss_pred hcCCChhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHH----HHHhccCc-----hhhhhH-HHHHHHHHHHHHhhc--
Q 004960 469 LENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLK----IFMVLTND-----EDLRSR-ARATELLGLVAESVG-- 536 (721)
Q Consensus 469 l~~~~~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~~l~----~~l~~~~~-----~~~~~~-~~~~~~l~~l~~~~~-- 536 (721)
.++.+-+. .-.++..++...++.+.||..++...|. +.++..++ ++..+. ...+.+++.+..++.
T Consensus 556 ~ne~End~---Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~ 632 (1010)
T KOG1991|consen 556 SNEVENDD---LTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENH 632 (1010)
T ss_pred HHhcchhH---HHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88765443 3455677888899999999877666554 34443111 122221 122344444444443
Q ss_pred hhhccCChHHHHHHHHhccCCC------------------ChhhHHHHHHHHHHHHHHcccCcccchhhhHHHHHhhccC
Q 004960 537 RARMEPILPPFVEAAISGFGLE------------------FSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNL 598 (721)
Q Consensus 537 ~~~~~~~~~~i~~~l~~~l~~~------------------~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~ 598 (721)
++.+...-+.+++.+--.++.+ .+++-...++.+.-+.+++.+.-..|.+.++|.+-+.+..
T Consensus 633 p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~ 712 (1010)
T KOG1991|consen 633 PEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIMWGLLELILEVFQDDGIDYFTDMMPALHNYVTY 712 (1010)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhheee
Confidence 1111111111222221122222 2233344555555566666666667777777777655543
Q ss_pred CCCCccCCCCCccccccCCCCCCCCchhhhhccccceeeecchhhhHHHHHHHHHHHHHHccccccchHHHHHHHHHhcc
Q 004960 599 DDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVRHA 678 (721)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 678 (721)
.-+. .....+ |.... -+..-+.++-.+........|++.+..++-.+++.+..|++.+++....++
T Consensus 713 g~~~--~~s~~~------y~~il------~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~dq~iplf~~~a~~~l 778 (1010)
T KOG1991|consen 713 GTPS--LLSNPD------YLQIL------LEIIKKVLTSENGEDSDCESACKLLEVIILNCKGLLDQYIPLFLELALSRL 778 (1010)
T ss_pred Cchh--hhccch------HHHHH------HHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCcHhhHhHHHHHHHHHHH
Confidence 3210 000000 00000 000000111123344678889999999999999988999999999888876
Q ss_pred cC--CChhHHHHHHHHH
Q 004960 679 SY--FHEDVRYQAVFAL 693 (721)
Q Consensus 679 ~~--~~~~vr~~a~~~l 693 (721)
.. .....|..+.+.+
T Consensus 779 ~~~~e~s~~~~~~leVv 795 (1010)
T KOG1991|consen 779 TREVETSELRVMLLEVV 795 (1010)
T ss_pred hccccchHHHHHHHHHH
Confidence 65 4556676666543
No 6
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.6e-31 Score=275.06 Aligned_cols=555 Identities=20% Similarity=0.267 Sum_probs=411.9
Q ss_pred cCCChHHHHHHHHHHHHHhcC----------CCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHH
Q 004960 13 LMPDNDARRQAEDQIKRLAKD----------PQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQS 82 (721)
Q Consensus 13 ~s~d~~~r~~A~~~L~~~~~~----------p~~~~~l~~il~~~~~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i~~~ 82 (721)
.++|++.|+-|.-.+..+... ...-..++.++...+.+.+|+.-+-.+--..++. +++ .-+++.+.
T Consensus 47 ~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~---l~e-~WPell~~ 122 (1075)
T KOG2171|consen 47 TSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARND---LPE-KWPELLQF 122 (1075)
T ss_pred cCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhc---ccc-chHHHHHH
Confidence 367889999998877654321 1345678888888888899987765444443321 222 33566778
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHccccCC--CCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhh--hc----cc
Q 004960 83 LIESITLEHSAPVRRASANVVSIIAKYAVPA--GEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIG--QT----FR 154 (721)
Q Consensus 83 ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~--~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~--~~----~~ 154 (721)
++++..+ +++..|..+..++..+....... +..+++.+.+.+.+.+++..+|..|+++++.++...+ .. +.
T Consensus 123 L~q~~~S-~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~ 201 (1075)
T KOG2171|consen 123 LFQSTKS-PNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFR 201 (1075)
T ss_pred HHHHhcC-CCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 8899886 89999999999999887643211 2456888888999988877799999999999998764 22 23
Q ss_pred ccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcC--CHHHHHHHHHHHHH
Q 004960 155 PHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASG--EEDVAVIAFEIFDE 232 (721)
Q Consensus 155 ~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~--~~~~~~~a~~~l~~ 232 (721)
..++.++..+...+++ ++...-..++.++..+++..+ ..+++++..+++...+...+. ++.+|..|++++..
T Consensus 202 ~llP~~l~vl~~~i~~-~d~~~a~~~l~~l~El~e~~p-----k~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs 275 (1075)
T KOG2171|consen 202 DLLPSLLNVLQEVIQD-GDDDAAKSALEALIELLESEP-----KLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVS 275 (1075)
T ss_pred HHhHHHHHHhHhhhhc-cchHHHHHHHHHHHHHHhhch-----HHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 3445555556666666 677777788888888877542 235667777777655555443 57889999999999
Q ss_pred HhcCccc-------chhhhHHHHHHHHHHhhcC------CCCC----hHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHH
Q 004960 233 LIESPAP-------LLGDSVKSIVHFSLEVSSS------HNLE----PNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQ 295 (721)
Q Consensus 233 l~~~~~~-------~~~~~~~~l~~~~~~~~~~------~~~~----~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~ 295 (721)
+++..|. +..+.++.++..+.+...+ ++.+ +.....|.+.+..++.+-+.. ...+++++
T Consensus 276 ~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~----~v~p~~~~ 351 (1075)
T KOG2171|consen 276 LSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGK----QVLPPLFE 351 (1075)
T ss_pred HHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChh----hehHHHHH
Confidence 9887432 2333333333333322111 1111 224556777777777543322 34677777
Q ss_pred HHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcCcc---ccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHH
Q 004960 296 VMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKH---VFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWM 372 (721)
Q Consensus 296 ~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~---~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~ 372 (721)
.+-.++...+ |..|.++..+++.+++..++. .++++++.+...++++++++|++|+.++|.++......+
T Consensus 352 ~l~~~l~S~~-------w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~i 424 (1075)
T KOG2171|consen 352 ALEAMLQSTE-------WKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEI 424 (1075)
T ss_pred HHHHHhcCCC-------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHH
Confidence 7777777765 999999999999999888753 568889999999999999999999999999999887777
Q ss_pred HHhHHH-HHHHHHhhcCCC-CHhHHHHHHHHHHHHHhhhhH-HHHHhhhhHHHHH-HHhccCCChHHHHHHHHHHHHHHH
Q 004960 373 KEKLES-VLHIVLGALRDP-EQFVRGAASFALGQFAEYLQP-EIVSHYESVLPCI-LNALEDESDEVKEKSYYALAAFCE 448 (721)
Q Consensus 373 ~~~l~~-i~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~-~~~~~~~~~l~~l-~~~l~~~~~~v~~~a~~al~~l~~ 448 (721)
..+... +.+.+...+.++ +++|...|+.++-++.+.+.. .+.+|+++++... ...++++.+.|++.+..+|+.++.
T Consensus 425 qk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~ 504 (1075)
T KOG2171|consen 425 QKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVAD 504 (1075)
T ss_pred HHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence 666554 445777777765 889999999999999887754 5668999999954 455556678899999999999999
Q ss_pred hhhhccccchHHHHHHHHHhhcCCC----hhHHHHHHHHHHHHHHHhh-hcchhhHHHHHHHHHHHHhccCchhhhhHHH
Q 004960 449 DMGEEILPFLDPLMGKLLAALENSP----RNLQETCMSAIGSVAAAAE-QAFIPYAERVLELLKIFMVLTNDEDLRSRAR 523 (721)
Q Consensus 449 ~~~~~~~~~~~~i~~~l~~~l~~~~----~~v~~~~l~~l~~l~~~~~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ 523 (721)
..+..+.||++.+|+.|.+++.+.+ +.+|-..++|++.++.+.| +.|.++.++++..+........+.+...+..
T Consensus 505 AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy 584 (1075)
T KOG2171|consen 505 AAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSY 584 (1075)
T ss_pred HHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHH
Confidence 9999999999999999999998764 5678899999999999999 7899999999998877653222233345677
Q ss_pred HHHHHHHHHHhhchhhccCChHHHHHHHHhccCC--------C----------Ch------------------hhHHHHH
Q 004960 524 ATELLGLVAESVGRARMEPILPPFVEAAISGFGL--------E----------FS------------------ELREYTH 567 (721)
Q Consensus 524 ~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~--------~----------~~------------------~~~~~~~ 567 (721)
.+..++.+++.+|+ .|.||++.+|+.++...+- + ++ +-+..+.
T Consensus 585 ~~~~warmc~ilg~-~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~ 663 (1075)
T KOG2171|consen 585 MIAFWARMCRILGD-DFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETAC 663 (1075)
T ss_pred HHHHHHHHHHHhch-hhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCCceeeeeeehhHHHHHHHH
Confidence 88999999999987 9999999999998864320 0 00 1246688
Q ss_pred HHHHHHHHHcccCcccchhhhHH
Q 004960 568 GFFSNIAGVLEDGFAQYLPLVVP 590 (721)
Q Consensus 568 ~~l~~l~~~~~~~~~~~l~~i~~ 590 (721)
.+++.++..++..|.||+..+++
T Consensus 664 ~~Lv~~a~~lk~~F~pYve~v~~ 686 (1075)
T KOG2171|consen 664 EALGEYAKELKEAFAPYVEQVVE 686 (1075)
T ss_pred HHHHHHHHhhhhhhhhHHHHHHH
Confidence 89999999999999999999888
No 7
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.4e-31 Score=258.17 Aligned_cols=612 Identities=17% Similarity=0.211 Sum_probs=432.8
Q ss_pred CCcHHHHHHHHhc--CCChhHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHHHHHHh--hcCCHHHHHHHHHHHHHHHcc
Q 004960 34 PQVVPALVQHLRT--AKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESIT--LEHSAPVRRASANVVSIIAKY 109 (721)
Q Consensus 34 p~~~~~l~~il~~--~~~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i~~~ll~~l~--~e~~~~vr~~~~~~l~~i~~~ 109 (721)
.+.+..+.+++++ ++++.+|..+...+.+.-. -++.-.+ |+-.|. .+.+..+|..++-.+..=.+.
T Consensus 9 e~~l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~------~pdfnnY----L~~IL~~~~~~d~~~Rs~aGLlLKNnvr~ 78 (885)
T KOG2023|consen 9 EQGLQQLAQLLKNSQSPNSETRNNVQEKLEQFNL------FPDFNNY----LIYILIRAKSEDVPTRSLAGLLLKNNVRG 78 (885)
T ss_pred HHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhc------ccchhce----eeEEEecccccchhHHHHhhhhHhccccc
Confidence 3567788888876 3678889888776665422 1111222 222222 124556677776666543332
Q ss_pred ccCCCCCcchHH----HHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Q 004960 110 AVPAGEWPDLLP----FLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIG 185 (721)
Q Consensus 110 ~~~~~~~~~ll~----~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~ 185 (721)
.++. .-++... .++..+.+.++..|...-.++..|+...+ ...+++++|.+.++|.+ ++......|+.+|.
T Consensus 79 ~~~~-~~~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~---~~~wpelLp~L~~~L~s-~d~n~~EgA~~AL~ 153 (885)
T KOG2023|consen 79 HYNS-IPSEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGG---LQHWPELLPQLCELLDS-PDYNTCEGAFGALQ 153 (885)
T ss_pred cccC-CChHHHHHHHHHHHhhccCchHHHHhhhhheeeeeecccc---cccchhHHHHHHHHhcC-CcccccchhHHHHH
Confidence 2221 1122333 33444455555555433333333332221 34679999999999998 88889999999999
Q ss_pred HhhhhcCChhhH----HHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHhhcCCCC
Q 004960 186 SFLEFTNDGAEV----VKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNL 261 (721)
Q Consensus 186 ~l~~~~~~~~~~----~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 261 (721)
++++...+-.+. ....-++|.+++ ..+.+++.+|..|+.|+.+++-..+.-+-.++..+++.++....++
T Consensus 154 KIcEDsa~~lds~~~~rpl~~mipkfl~----f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~-- 227 (885)
T KOG2023|consen 154 KICEDSAQFLDSDVLTRPLNIMIPKFLQ----FFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDE-- 227 (885)
T ss_pred HHHhhhHHHHhhhcccCchHHhHHHHHH----HHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCC--
Confidence 998865332221 123456666666 6777899999999999999998888777778888888888776444
Q ss_pred ChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHH-cCc----cccH
Q 004960 262 EPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALN-LAK----HVFP 336 (721)
Q Consensus 262 ~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~-~~~----~~~~ 336 (721)
++++|.+....+..+.+..++.+.+ .+..+++.++..-.+.+ .++.-.|.++.-.+++. +++ ..++
T Consensus 228 ~~eVRk~vC~alv~Llevr~dkl~p--hl~~IveyML~~tqd~d-------E~VALEACEFwla~aeqpi~~~~L~p~l~ 298 (885)
T KOG2023|consen 228 DPEVRKNVCRALVFLLEVRPDKLVP--HLDNIVEYMLQRTQDVD-------ENVALEACEFWLALAEQPICKEVLQPYLD 298 (885)
T ss_pred CHHHHHHHHHHHHHHHHhcHHhccc--chHHHHHHHHHHccCcc-------hhHHHHHHHHHHHHhcCcCcHHHHHHHHH
Confidence 8999999999999999888877653 37777777776655544 23555566666666543 222 2334
Q ss_pred hHHHHHHhh----------hc-C---------------------------------------------CChhhHhHHHHH
Q 004960 337 PVFEFASVS----------CQ-N---------------------------------------------ASPKYREAAVTA 360 (721)
Q Consensus 337 ~i~~~l~~~----------l~-~---------------------------------------------~~~~~r~~al~~ 360 (721)
.++|.+.+. ++ . .+|..|..+..+
T Consensus 299 kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAa 378 (885)
T KOG2023|consen 299 KLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAA 378 (885)
T ss_pred HHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHH
Confidence 445544322 11 0 129999998888
Q ss_pred HHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHH
Q 004960 361 IGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSY 440 (721)
Q Consensus 361 l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~ 440 (721)
+..++...++. .++.++|.+.+.|.++.+.||+++.-++|.+++.+-..+.+|++.++|.+++.|.|..+-||.-+|
T Consensus 379 LDVLanvf~~e---lL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITC 455 (885)
T KOG2023|consen 379 LDVLANVFGDE---LLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITC 455 (885)
T ss_pred HHHHHHhhHHH---HHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeee
Confidence 88888765554 356788999999999999999999999999999998888899999999999999999999999999
Q ss_pred HHHHHHHHhhh-hccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHhccCchhhh
Q 004960 441 YALAAFCEDMG-EEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLR 519 (721)
Q Consensus 441 ~al~~l~~~~~-~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~ 519 (721)
|+|+++..-.- ..-..|+.+++..+.+.+-+++..|+++++.+++.+-+..+....||++.++..+...++.-...+..
T Consensus 456 WTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLl 535 (885)
T KOG2023|consen 456 WTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLL 535 (885)
T ss_pred eeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhccee
Confidence 99999987663 33347899999999999999999999999999999999999999999999999888877653222221
Q ss_pred hHHHHHHHHHHHHHhhchhhccC-ChHHHHHHHHhc---cCCCChhhHHHHHHHHHHHHHHcccCcccchhhhHHHHHhh
Q 004960 520 SRARATELLGLVAESVGRARMEP-ILPPFVEAAISG---FGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSS 595 (721)
Q Consensus 520 ~~~~~~~~l~~l~~~~~~~~~~~-~~~~i~~~l~~~---l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~ 595 (721)
...+++|.++.++|...-.| |++-+|+-+++- ++++++++-. .+.|++.++..+|..|.||.+.+...-++.
T Consensus 536 ---ILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfP-LLEClSsia~AL~~gF~P~~~~Vy~Rc~~i 611 (885)
T KOG2023|consen 536 ---ILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDLFP-LLECLSSIASALGVGFLPYAQPVYQRCFRI 611 (885)
T ss_pred ---hHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchHHH-HHHHHHHHHHHHhccccccCHHHHHHHHHH
Confidence 35688899998888633333 566777777664 4466777654 789999999999999999999888776555
Q ss_pred ccCCCCCccCCCCCccccccCCCCCCCCchhhhhccccceeeecchhhhHHHHHHHHHHHHHHccccccchHH--HHHHH
Q 004960 596 CNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLE--ESLKI 673 (721)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~~~~~~~~~~--~~~~~ 673 (721)
++.-........ .+.... ...+.| -..++.+++.++..+|+++.+.+. .+.+.
T Consensus 612 l~~t~q~~~~~~--~~~~~~--------------~pdkdf---------iI~sLDL~SGLaegLg~~ie~Lva~snl~~l 666 (885)
T KOG2023|consen 612 LQKTLQLLAKVQ--QDPTVE--------------APDKDF---------IIVSLDLLSGLAEGLGSHIEPLVAQSNLLDL 666 (885)
T ss_pred HHHHHHHHHhcc--CCcccc--------------CCCcce---------EEEeHHHHhHHHHHhhhchHHHhhhccHHHH
Confidence 431000000000 000000 011222 144789999999999999888755 58888
Q ss_pred HHhcccCCChhHHHHHHHHHHHHHHHHHHhcccC
Q 004960 674 LVRHASYFHEDVRYQAVFALKNILTAAHAIFQSH 707 (721)
Q Consensus 674 l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~ 707 (721)
+.+++.|.-++||+.|...||.+.+++..+..+.
T Consensus 667 ll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~ 700 (885)
T KOG2023|consen 667 LLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPN 700 (885)
T ss_pred HHHHhccCChHHHHHHHHHHHHHHHHHHHhccch
Confidence 9999999999999999999999999987665443
No 8
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-29 Score=250.48 Aligned_cols=616 Identities=16% Similarity=0.197 Sum_probs=427.6
Q ss_pred ChhHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHccccCC---CCCcchHHHHHH
Q 004960 49 TPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPA---GEWPDLLPFLFQ 125 (721)
Q Consensus 49 ~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~---~~~~~ll~~l~~ 125 (721)
.|..+..|+..+-..-.. .+|...-+.+...+..-...++...++....+++|.+...-.|+ ...++++..+.+
T Consensus 103 ep~~~s~Aaq~va~IA~~---ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~ 179 (859)
T KOG1241|consen 103 EPRRPSSAAQCVAAIACI---ELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQ 179 (859)
T ss_pred CCCccchHHHHHHHHHHh---hCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHh
Confidence 344444454444333211 14444445555555555555555679999999999999865553 345677777777
Q ss_pred hccC--CcHHHHHHHHHHHHHhhhhhhhcccc--cHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHH
Q 004960 126 FSQS--EQEEHREVALILFSSLTETIGQTFRP--HFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFR 201 (721)
Q Consensus 126 ~l~~--~~~~~~~~al~~l~~i~~~~~~~~~~--~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 201 (721)
.... ++..+|.+|+.+|..-.+-....|.. ..+-+++..-..-+. ++.+++.+|+.||.+++..+-+. ..
T Consensus 180 gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~-~d~~i~~aa~~ClvkIm~LyY~~-----m~ 253 (859)
T KOG1241|consen 180 GMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQS-PDEEIQVAAFQCLVKIMSLYYEF-----ME 253 (859)
T ss_pred hccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccC-CcHHHHHHHHHHHHHHHHHHHHH-----HH
Confidence 7764 35688999999998877655433321 223445555555556 88999999999999997754211 22
Q ss_pred hhHH-HHHHHHHHHhhcCCHHHHHHHHHHHHHHhcC---------------cc----cchhhhHHHHHHHHHHhhcC--C
Q 004960 202 EFIP-SILNVSRQCLASGEEDVAVIAFEIFDELIES---------------PA----PLLGDSVKSIVHFSLEVSSS--H 259 (721)
Q Consensus 202 ~~l~-~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~---------------~~----~~~~~~~~~l~~~~~~~~~~--~ 259 (721)
.++. .++......+.++++++..+++++|..+.+. .+ .|...-++.+++.+++.+.. +
T Consensus 254 ~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde 333 (859)
T KOG1241|consen 254 PYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDE 333 (859)
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCC
Confidence 2222 2444444567788999999999999977542 12 12233344556666655533 1
Q ss_pred ---CCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcCc----
Q 004960 260 ---NLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAK---- 332 (721)
Q Consensus 260 ---~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~---- 332 (721)
+.+...-..|-.+|.-+++..++ +.++.+++.+-..+..++ |..|.+|..+++.+-.....
T Consensus 334 ~~d~DdWnp~kAAg~CL~l~A~~~~D-----~Iv~~Vl~Fiee~i~~pd-------wr~reaavmAFGSIl~gp~~~~Lt 401 (859)
T KOG1241|consen 334 DDDDDDWNPAKAAGVCLMLFAQCVGD-----DIVPHVLPFIEENIQNPD-------WRNREAAVMAFGSILEGPEPDKLT 401 (859)
T ss_pred CcccccCcHHHHHHHHHHHHHHHhcc-----cchhhhHHHHHHhcCCcc-------hhhhhHHHHHHHhhhcCCchhhhh
Confidence 11233445555555555554333 345566665555555544 99999999888877665442
Q ss_pred cccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHH--hHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhh
Q 004960 333 HVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKE--KLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQ 410 (721)
Q Consensus 333 ~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~--~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 410 (721)
.+.+..++.+...+.++....|.++.+.+|.+++.+++...+ ++...++.+...++| +|+|-..+||++..+++...
T Consensus 402 ~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~ 480 (859)
T KOG1241|consen 402 PIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAY 480 (859)
T ss_pred HHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHH
Confidence 344566777777777888888899999999999998865543 467888899999976 89999999999999997664
Q ss_pred HH---------HHHhhhhHHHHHHHhccCC---ChHHHHHHHHHHHHHHH------------------------------
Q 004960 411 PE---------IVSHYESVLPCILNALEDE---SDEVKEKSYYALAAFCE------------------------------ 448 (721)
Q Consensus 411 ~~---------~~~~~~~~l~~l~~~l~~~---~~~v~~~a~~al~~l~~------------------------------ 448 (721)
.. ..++++.++..|++.-... ....|.+|..||+.+++
T Consensus 481 eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l 560 (859)
T KOG1241|consen 481 EAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQIL 560 (859)
T ss_pred HhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 32 1235666666666654432 24567777777776653
Q ss_pred ------------------------hhhhccccchHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHhhhcchhhHHHHH
Q 004960 449 ------------------------DMGEEILPFLDPLMGKLLAALENS-PRNLQETCMSAIGSVAAAAEQAFIPYAERVL 503 (721)
Q Consensus 449 ------------------------~~~~~~~~~~~~i~~~l~~~l~~~-~~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~ 503 (721)
.++++..++.+.++..+++++++. +.-+.+.++-+++.++...|..|.+|.+.+.
T Consensus 561 ~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~ 640 (859)
T KOG1241|consen 561 SLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFK 640 (859)
T ss_pred cHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 233455667788888888888874 4557889999999999999999999999999
Q ss_pred HHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCC--ChhhHHHHHHHHHHHHHHcccCc
Q 004960 504 ELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLE--FSELREYTHGFFSNIAGVLEDGF 581 (721)
Q Consensus 504 ~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~--~~~~~~~~~~~l~~l~~~~~~~~ 581 (721)
|++...+... .+..+-..++...|.++++++. .|.||.+.+|+.++++++++ +.+++..++++||+++-..|.+|
T Consensus 641 pyL~~gL~n~--~e~qVc~~aVglVgdl~raL~~-~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F 717 (859)
T KOG1241|consen 641 PYLLMGLSNF--QEYQVCAAAVGLVGDLARALED-DILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADF 717 (859)
T ss_pred HHHHHHhhcc--hHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhH
Confidence 9999988543 3456667788999999999965 89999999999999999876 78899999999999999999999
Q ss_pred ccchhhhHHHHHhhccCCCCCccCCCCCccccccCCCCCCCCchhhhhccccceeeecchhhhHHHHHHHHHHHHHHcc-
Q 004960 582 AQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTK- 660 (721)
Q Consensus 582 ~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~~- 660 (721)
.+|+..++|.+-++-+...+. .+++ +. .=..+.|.+++++...+...++
T Consensus 718 ~~Yl~~vm~llq~as~~~~d~------~~~~-----------~~-------------dYvd~LRe~~leay~gi~qglk~ 767 (859)
T KOG1241|consen 718 EPYLEMVMPLLQQASSVQTDP------ADDS-----------MV-------------DYVDELREGILEAYTGIIQGLKT 767 (859)
T ss_pred HHHHHHHHHHHHHHHhccCCC------Cccc-----------HH-------------HHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999998776432211 0000 00 0112578999999988888776
Q ss_pred ----ccccchHHHHHHHHHhcccC--CChhHHHHHHHHHHHHHHHHHHhcccCCcc-hhHHHHHhh
Q 004960 661 ----SSYAPFLEESLKILVRHASY--FHEDVRYQAVFALKNILTAAHAIFQSHNVS-LCYHFFLLS 719 (721)
Q Consensus 661 ----~~~~~~~~~~~~~l~~~~~~--~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~-~~~~~~~~~ 719 (721)
..+.||++.|+..+-+.-.+ .++.+..+|+..||.|+..++....+-... .--+.||.+
T Consensus 768 ~~~~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~~~~~~~~~~~i~~~L~~ 833 (859)
T KOG1241|consen 768 HADVMLVQPYVPHIISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKGVIKLFLDEDWIKDFLNE 833 (859)
T ss_pred ccchhhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccchhhhhcchHHHHHHHHH
Confidence 24679999999998887543 457888889999999988877655544432 333455543
No 9
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.1e-29 Score=247.39 Aligned_cols=587 Identities=18% Similarity=0.211 Sum_probs=404.1
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCcHHHHHHHHhcCC-ChhHHHHHHHHHHHhhhhhhcC-------CCHH
Q 004960 3 QSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAK-TPNVRQLAAVLLRKKITGHWAK-------LSPQ 74 (721)
Q Consensus 3 ~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~-~~~vr~~a~~~l~~~i~~~w~~-------~~~~ 74 (721)
+.+.+.|.++.+||+..|+.||+.|++...+++|...+++++.+++ ++++|..|++++||.++++|.. +.++
T Consensus 5 e~l~~~l~qTl~pdps~rk~aEr~L~~~e~q~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~ 84 (960)
T KOG1992|consen 5 ETLANYLLQTLSPDPSVRKPAERALRSLEGQQNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEE 84 (960)
T ss_pred HHHHHHHHhcCCCCCccCchHHHHHHHhccCCCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccchh
Confidence 5678889999999999999999999999999999999999998854 9999999999999999999974 6788
Q ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhccc
Q 004960 75 LKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFR 154 (721)
Q Consensus 75 ~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~ 154 (721)
.++.||..++..+.+ .+..++..+.++++.|++.++|. .||+++|.+...++++|-++..+.+.+-..+++.....+.
T Consensus 85 ~~e~ikslIv~lMl~-s~~~iQ~qlseal~~Ig~~DFP~-kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efr 162 (960)
T KOG1992|consen 85 DREQIKSLIVTLMLS-SPFNIQKQLSEALSLIGKRDFPD-KWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFR 162 (960)
T ss_pred HHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHhccccch-hhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCcccc
Confidence 999999999999996 68999999999999999999996 9999999999999999988888888888888876532221
Q ss_pred ---------ccHH----HHHHHHH---HhhCC-CCCHH---HHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHH
Q 004960 155 ---------PHFA----DMQALLL---KCLQD-ETSNR---VRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQC 214 (721)
Q Consensus 155 ---------~~~~----~l~~~l~---~~l~~-~~~~~---vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~ 214 (721)
-.++ .+..++. ...+. +.+.. +-...+..+.++.-...-.+-...+.+.+...+..+.+.
T Consensus 163 SdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k~ 242 (960)
T KOG1992|consen 163 SDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHKL 242 (960)
T ss_pred cHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHHH
Confidence 1111 1112221 22211 02222 111111111222111100011222334444444444434
Q ss_pred hhcCC-------------HHHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHhhcCCCC---ChHHHHHHHHHHHHHHH
Q 004960 215 LASGE-------------EDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNL---EPNTRHQAIQIISWLAK 278 (721)
Q Consensus 215 l~~~~-------------~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~r~~a~~~l~~l~~ 278 (721)
+..++ .+++...|+.+.-++...+.-++++++.++...+.++..... -+.....|+.+|..+++
T Consensus 243 l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~ 322 (960)
T KOG1992|consen 243 LTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSR 322 (960)
T ss_pred HhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHh
Confidence 43211 234667888888888888888898999988766665543322 23456678999998886
Q ss_pred Hh--HhhhhhcCChHHHHH-HHHhhhccCCCCCC----------------CCCCcHHHHHHHHHHHHHHHcCccccHhHH
Q 004960 279 YK--YNSLKKHKLVIPILQ-VMCPLLAESNEAGE----------------DDDLAPDRAAAEVIDTMALNLAKHVFPPVF 339 (721)
Q Consensus 279 ~~--~~~~~~~~~~~~il~-~l~~~l~~~~~~~~----------------~~~~~~~~~a~~~l~~l~~~~~~~~~~~i~ 339 (721)
.. +..+.....+..+.+ +++|.+.-..+|+| .|-..-|++|.+.+..++..+...+.+.+-
T Consensus 323 r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~ 402 (960)
T KOG1992|consen 323 RPHYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFS 402 (960)
T ss_pred hhhhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 42 223333334444443 33454433222211 123455788999999999988655555444
Q ss_pred HHHHhhhc------CCChhhHhHHHHHHHHHhhccH---------HHH---HHh-HHHHHHHHHhhcCCCCHhHHHHHHH
Q 004960 340 EFASVSCQ------NASPKYREAAVTAIGIISEGCA---------EWM---KEK-LESVLHIVLGALRDPEQFVRGAASF 400 (721)
Q Consensus 340 ~~l~~~l~------~~~~~~r~~al~~l~~i~~~~~---------~~~---~~~-l~~i~~~l~~~l~d~~~~vr~~a~~ 400 (721)
..+...+. |.+|+.++.++..+.+++.... ..+ ..+ ...+.|.+..-=..++|.++..+.+
T Consensus 403 ~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIK 482 (960)
T KOG1992|consen 403 SEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIK 482 (960)
T ss_pred HHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhcccc
Confidence 44444443 5699999999999998876421 111 111 1233343333222568899988877
Q ss_pred HHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhh---------hccccchHHHHHHHHHhhcC
Q 004960 401 ALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMG---------EEILPFLDPLMGKLLAALEN 471 (721)
Q Consensus 401 ~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~---------~~~~~~~~~i~~~l~~~l~~ 471 (721)
-+-.+-...++ .++-..+|.++..|+.+..-|...|+.++..+....+ ..+.||...++..+++.++.
T Consensus 483 y~~~FR~ql~~---~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~ 559 (960)
T KOG1992|consen 483 YIYTFRNQLGK---EHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSL 559 (960)
T ss_pred eeeeecccCCh---HHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccC
Confidence 76655555543 5677889999999999888899999999998875442 46778999999999998888
Q ss_pred CChhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHhcc--CchhhhhHHHHHHHHHHHHHhhchh---hccCChHH
Q 004960 472 SPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLT--NDEDLRSRARATELLGLVAESVGRA---RMEPILPP 546 (721)
Q Consensus 472 ~~~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~--~~~~~~~~~~~~~~l~~l~~~~~~~---~~~~~~~~ 546 (721)
+...-.+..+.+|-+++....+...|+.+.+++.|.+++... +..+...-...++.++.+....++. .+..+...
T Consensus 560 p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~a 639 (960)
T KOG1992|consen 560 PGKAENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEA 639 (960)
T ss_pred CcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHH
Confidence 766666788889999999888889899999999888887542 2222333345778888887665532 34445566
Q ss_pred HHHHHHhccCCCChhhHHHHHHHHHHHHHHcccCcccchhhhHHHHHh
Q 004960 547 FVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFS 594 (721)
Q Consensus 547 i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~ 594 (721)
+++.+-..++.+-.++-.+++..++.++...+....+....+.|.+++
T Consensus 640 L~p~fq~Il~eDI~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lLs 687 (960)
T KOG1992|consen 640 LFPVFQTILSEDIQEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLS 687 (960)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhcC
Confidence 776666667777778888999999999988887665556666666653
No 10
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=2.1e-26 Score=227.78 Aligned_cols=499 Identities=18% Similarity=0.170 Sum_probs=337.2
Q ss_pred ChhHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCcHHHHHHHHhcC-CChhHHHHHHHHHHHhhhhhhcC---------
Q 004960 1 MAQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTA-KTPNVRQLAAVLLRKKITGHWAK--------- 70 (721)
Q Consensus 1 m~~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~-~~~~vr~~a~~~l~~~i~~~w~~--------- 70 (721)
|.+++.+++.++++.|+..|+.||+.|.+++++|+|+..+++++..+ -++.+|+.|++++||.+.+.|..
T Consensus 1 ~~~ellqcf~qTldada~~rt~AE~~Lk~leKqPgFv~all~i~s~de~~lnvklsAaIYfKNkI~rsWss~~d~~i~~D 80 (970)
T COG5656 1 MREELLQCFLQTLDADAGKRTIAEAMLKDLEKQPGFVMALLHICSKDEGDLNVKLSAAIYFKNKIIRSWSSKRDDGIKAD 80 (970)
T ss_pred ChHHHHHHHHHHhccCcchhhHHHHHHHHhhcCCcHHHHHHHHHhhccCCchhhHHHHHHHhhhhhhhhhhcccCCCCCc
Confidence 78999999999999999999999999999999999999999999876 58999999999999999999987
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhh
Q 004960 71 LSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIG 150 (721)
Q Consensus 71 ~~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~ 150 (721)
.+++.++.++++++..+.. .+...|...-.++..|.+.++|...|+ +.|...+++.+++..+...++.|+.++++...
T Consensus 81 ek~e~K~~lienil~v~l~-sp~~tr~~l~ail~~I~seD~ps~~wg-l~p~~~nll~s~ea~~vy~gLlcl~elfkayR 158 (970)
T COG5656 81 EKSEAKKYLIENILDVFLY-SPEVTRTALNAILVNIFSEDKPSDLWG-LFPKAANLLRSSEANHVYTGLLCLEELFKAYR 158 (970)
T ss_pred ccHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHhccccCchhhcc-cchHHHHhhcccchhHHHHHHHHHHHHHHHHh
Confidence 3345566666666666664 677788888888888999999988999 99999999999999999999999999998642
Q ss_pred -----h--cccccHHHHHHHHHHh---hCCCCCHH---HHHHHHHHHHHhhhhcCChhhH---HHHHhhHHHHHHHHHH-
Q 004960 151 -----Q--TFRPHFADMQALLLKC---LQDETSNR---VRIAALKAIGSFLEFTNDGAEV---VKFREFIPSILNVSRQ- 213 (721)
Q Consensus 151 -----~--~~~~~~~~l~~~l~~~---l~~~~~~~---vr~~a~~~l~~l~~~~~~~~~~---~~~~~~l~~ll~~l~~- 213 (721)
+ .+.+.+..+.|++.+. +.+.+|.. +-...++.... +.+.+-+... ..+...+...+..+++
T Consensus 159 wk~ndeq~di~~li~alfpile~~g~nl~s~~ny~s~e~l~LILk~fKs-vcy~~LP~~lsa~e~f~sw~ql~l~i~qkp 237 (970)
T COG5656 159 WKYNDEQVDILMLITALFPILEKVGGNLESQGNYGSVETLMLILKSFKS-VCYYSLPDFLSAIETFSSWFQLSLRILQKP 237 (970)
T ss_pred hhccchHhhHHHHHHHhhHHHHHHhhccccCCchhHHHHHHHHHHHHHH-HHHhhCCHHHccchhhHHHHHHHHHHHcCC
Confidence 1 1233345555655543 22213332 22222332222 2222111111 1122222222222211
Q ss_pred ----HhhcCCHHH---------HHHHHHHHHHHhcCccc------------chhhhHHHHHHHHHH----hhcC-CCCCh
Q 004960 214 ----CLASGEEDV---------AVIAFEIFDELIESPAP------------LLGDSVKSIVHFSLE----VSSS-HNLEP 263 (721)
Q Consensus 214 ----~l~~~~~~~---------~~~a~~~l~~l~~~~~~------------~~~~~~~~l~~~~~~----~~~~-~~~~~ 263 (721)
.+. -++++ .++|+..+.++...... .+...++.++...++ |.+. -++++
T Consensus 238 lp~evls-ldpevRs~~~wvKckKWa~ynLyR~fqRy~k~s~~~~y~~f~~~f~t~vp~il~tffkqie~wgqgqLWlsd 316 (970)
T COG5656 238 LPNEVLS-LDPEVRSLSKWVKCKKWAAYNLYRSFQRYIKKSYKKSYLSFYITFMTRVPMILATFFKQIEEWGQGQLWLSD 316 (970)
T ss_pred CCHHHhc-cChhhccccchhhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeecch
Confidence 111 13333 46777777666543211 112244444444332 3332 23555
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhcCChHHHH-HHHHhhhccCCCCCC-----------------CCCCcHHHHHHHHHHH
Q 004960 264 NTRHQAIQIISWLAKYKYNSLKKHKLVIPIL-QVMCPLLAESNEAGE-----------------DDDLAPDRAAAEVIDT 325 (721)
Q Consensus 264 ~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il-~~l~~~l~~~~~~~~-----------------~~~~~~~~~a~~~l~~ 325 (721)
..-+....++..++.....+---.+.+.-++ ..++|.++-.++++| ++..++.-+|..++..
T Consensus 317 ~~LYfi~~Fve~cv~~d~tw~l~ePhlq~ii~~vIfPllc~see~eElfEnDp~eyirry~df~d~g~spdlaal~fl~~ 396 (970)
T COG5656 317 IELYFIDFFVELCVDADQTWRLMEPHLQYIISGVIFPLLCLSEEEEELFENDPDEYIRRYYDFFDNGLSPDLAALFFLII 396 (970)
T ss_pred HHHHHHHHHHHHHhhhHhhHhhhccHHHHHHHhhhhhhcCCChhhHHHHhcCHHHHHHHhcchhcCCCChhHHHHHHHHH
Confidence 5555555555555533322211012344444 467888876654322 3345667778888888
Q ss_pred HHHHcCccccHhHHHHHHhhhcC--------CChhhHhHHHHHHHHHhhc--cHHHHHHhHHH-HHHHHHhhcCCCCHhH
Q 004960 326 MALNLAKHVFPPVFEFASVSCQN--------ASPKYREAAVTAIGIISEG--CAEWMKEKLES-VLHIVLGALRDPEQFV 394 (721)
Q Consensus 326 l~~~~~~~~~~~i~~~l~~~l~~--------~~~~~r~~al~~l~~i~~~--~~~~~~~~l~~-i~~~l~~~l~d~~~~v 394 (721)
.+...++..+..+++++...++. ++....++|+..++++..- -+....+.++. +++.+.+.++++....
T Consensus 397 ~~sKrke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL 476 (970)
T COG5656 397 SKSKRKEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFL 476 (970)
T ss_pred HhcccchhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccch
Confidence 88888888899999988877621 3567889999999999872 23344444443 5678899999999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhh--hhccccchHHHHHHHHHhhcCC
Q 004960 395 RGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDM--GEEILPFLDPLMGKLLAALENS 472 (721)
Q Consensus 395 r~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~--~~~~~~~~~~i~~~l~~~l~~~ 472 (721)
|..||..++.+.+.+++. ....++.+...+.+++.+-.|+..|+-|+..++.+. .+.+..+++.+++.|+.+-++-
T Consensus 477 ~Srace~is~~eeDfkd~--~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~f 554 (970)
T COG5656 477 KSRACEFISTIEEDFKDN--GILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTF 554 (970)
T ss_pred HHHHHHHHHHHHHhcccc--hHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccc
Confidence 999999999997777642 234566666777778877789999999999998765 4567789999999999887776
Q ss_pred ChhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHH
Q 004960 473 PRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKI 508 (721)
Q Consensus 473 ~~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~~l~~ 508 (721)
+.++-.. ++..++...++...||.++++..+.+
T Consensus 555 eiD~LS~---vMe~fVe~fseELspfa~eLa~~Lv~ 587 (970)
T COG5656 555 EIDPLSM---VMESFVEYFSEELSPFAPELAGSLVR 587 (970)
T ss_pred cchHHHH---HHHHHHHHhHHhhchhHHHHHHHHHH
Confidence 6554444 44556777888888998887765544
No 11
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.1e-25 Score=224.38 Aligned_cols=585 Identities=17% Similarity=0.258 Sum_probs=369.9
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHhcCCCcHHHHHHHHhc-CCChhHHHHHHHHHHHhhhhhhcC-----CCHHHHHH
Q 004960 5 LELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRT-AKTPNVRQLAAVLLRKKITGHWAK-----LSPQLKQL 78 (721)
Q Consensus 5 l~~ll~~~~s~d~~~r~~A~~~L~~~~~~p~~~~~l~~il~~-~~~~~vr~~a~~~l~~~i~~~w~~-----~~~~~~~~ 78 (721)
+.+.|+++.|||..+++.||++|++.+++|||...+..++.+ +.+.++|.+|++++||.+.++|.. +++|+++.
T Consensus 2 vvq~Lq~Ats~d~~v~k~AE~qLr~WEtqPGF~~~L~sI~l~~t~dv~vRWmAviyfKNgIdryWR~~~~~sl~~EEK~~ 81 (978)
T KOG1993|consen 2 VVQVLQQATSQDHIVVKPAEAQLRQWETQPGFFSKLYSIFLSKTNDVSVRWMAVIYFKNGIDRYWRRNTKMSLPPEEKDF 81 (978)
T ss_pred HHHHHHHhcCCCcccchhHHHHHHhhccCCcHHHHHHHHHhccccceeeeeehhhhHhcchhHHhhcCCcccCCHHHHHH
Confidence 568899999999999999999999999999999999999987 568999999999999999999984 89999999
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCC----cHHHHHHHHHHHHHhhhhhh----
Q 004960 79 VKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSE----QEEHREVALILFSSLTETIG---- 150 (721)
Q Consensus 79 i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~----~~~~~~~al~~l~~i~~~~~---- 150 (721)
||..++..+. |+++.+..+.|..++.||+.++|. .||+++|.|.+.+++. |....+..+..+..+.+..+
T Consensus 82 iR~~Ll~~~~-E~~nQlaiQ~AvlisrIARlDyPr-eWP~Lf~~L~~~Lq~~~~~gD~~~~~RiLi~l~~ilK~Lat~RL 159 (978)
T KOG1993|consen 82 IRCNLLLHSD-EENNQLAIQNAVLISRIARLDYPR-EWPDLFPDLLGQLQSSLGTGDSLVQHRILITLHHILKALATKRL 159 (978)
T ss_pred HHHHHHHhcc-cchhHHHHHHHHHHHHHHhcCCCc-cchhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhHH
Confidence 9999999988 689999999999999999999996 9999999999999876 77777888999998887653
Q ss_pred ----hcccccHHHHHHHHHHhhCCC-----------CCH-------HHHHHHHHHHHHhhhhc-CChhhHHHHHhhHHHH
Q 004960 151 ----QTFRPHFADMQALLLKCLQDE-----------TSN-------RVRIAALKAIGSFLEFT-NDGAEVVKFREFIPSI 207 (721)
Q Consensus 151 ----~~~~~~~~~l~~~l~~~l~~~-----------~~~-------~vr~~a~~~l~~l~~~~-~~~~~~~~~~~~l~~l 207 (721)
..+.+..+.+.+++...+-++ .+. +.-..+++.+.+++.+. ..+.... +.+-++.+
T Consensus 160 ~a~rk~F~el~~~I~~~l~~~l~s~lt~~~lq~~ss~~ea~~LsalQ~s~~~lk~lRrlvv~G~~~P~kse-~~eRl~~F 238 (978)
T KOG1993|consen 160 LADRKAFYELAPEILTILAPILWSSLTMMFLQSVSSIKEATLLSALQRSYLTLKVLRRLVVFGFQNPSKSE-FFERLLQF 238 (978)
T ss_pred hhhhHHHHHHhHHHHHHHHHHHhcchHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhccCCcchhh-HHHHHHHH
Confidence 123333444444333222220 111 22233455555554432 1221111 12222233
Q ss_pred HHH----HHHHhhcC----CHHHH----HHHHHHHHHHhcCcccchhh--hHHHHHHHHHHhhcCC---------CCC--
Q 004960 208 LNV----SRQCLASG----EEDVA----VIAFEIFDELIESPAPLLGD--SVKSIVHFSLEVSSSH---------NLE-- 262 (721)
Q Consensus 208 l~~----l~~~l~~~----~~~~~----~~a~~~l~~l~~~~~~~~~~--~~~~l~~~~~~~~~~~---------~~~-- 262 (721)
++. +...+..+ ..++. ..-.+.+..+.+.+|.-|.. .++..+++.+....++ +..
T Consensus 239 ~e~~~~~~~~~~s~~~~~vk~di~ek~~i~l~K~l~~l~~rhpfsF~~~~~~~~~l~f~~~yIf~~~~~l~~~~~~~~~f 318 (978)
T KOG1993|consen 239 LELHQRKLLSSLSTGTQSVKSDILEKFCIKLMKVLAFLFNRHPFSFSFYSPCPVKLEFSIDYIFDEYDFLGQISGHLSSF 318 (978)
T ss_pred HHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHhcCCCcccccccccceeeehhhhhhhcccchhcccccccccH
Confidence 332 11111111 11222 22334444555555443333 3333333333322221 000
Q ss_pred hHHHHHHHHHHHHHHHHhHhhh---------------h----------hcCChHHHHHHHHhh--------hccCCCCCC
Q 004960 263 PNTRHQAIQIISWLAKYKYNSL---------------K----------KHKLVIPILQVMCPL--------LAESNEAGE 309 (721)
Q Consensus 263 ~~~r~~a~~~l~~l~~~~~~~~---------------~----------~~~~~~~il~~l~~~--------l~~~~~~~~ 309 (721)
++.-.+++..+..+...+.... . ..+-+..+++.++.. +.+|.+|.+
T Consensus 319 e~f~iq~l~mlK~vm~~~~~~~s~~~k~~~d~~~~~~~~a~~i~~sFl~~~rIt~lcd~Lvt~YflLt~~eLEeW~~dPE 398 (978)
T KOG1993|consen 319 EEFFIQCLNMLKKVMIMKNYKFSLTIKEFCDTKDEHLETAQKIYNSFLTDNRITNLCDLLVTHYFLLTEEELEEWTQDPE 398 (978)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccchhcccCccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcCHHHHHHHhcChH
Confidence 1222333333333322111000 0 001122233333332 112222211
Q ss_pred -------CC--CCcHHHHHHHHHHHHHHHcCccccHhHHHHHHhhhcCC--C-------hhhHhHHHHHHHHHhhccHHH
Q 004960 310 -------DD--DLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNA--S-------PKYREAAVTAIGIISEGCAEW 371 (721)
Q Consensus 310 -------~~--~~~~~~~a~~~l~~l~~~~~~~~~~~i~~~l~~~l~~~--~-------~~~r~~al~~l~~i~~~~~~~ 371 (721)
.. ++..|-+|...+..+-..+++-..|.++..+....+.. . .-.+.|...++|..+....+.
T Consensus 399 ~~~~Eq~~~dwey~lRPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~ 478 (978)
T KOG1993|consen 399 GWVLEQSGGDWEYNLRPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNI 478 (978)
T ss_pred HhhhhcccccceeccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11 24677788888888888888777788888775433221 1 223555566666655433221
Q ss_pred --HHHhH-HHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCC-ChHHHHHHHHHHHHHH
Q 004960 372 --MKEKL-ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDE-SDEVKEKSYYALAAFC 447 (721)
Q Consensus 372 --~~~~l-~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~-~~~v~~~a~~al~~l~ 447 (721)
+...+ ..++|-+- --.+....+|+..+|.+|.....-.. .+.-+-+-.++++.+++. +..|+..++.++.-.+
T Consensus 479 ~dF~~Wl~~~llpEl~-~~~~~~RiiRRRVa~ilg~Wvsvq~~--~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~v 555 (978)
T KOG1993|consen 479 LDFDKWLQEALLPELA-NDHGNSRIIRRRVAWILGQWVSVQQK--LELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVV 555 (978)
T ss_pred CCHHHHHHHhhCHHhh-hcccchhHHHHHHHHHHhhhhheech--HhHHHHHHHHHHHhcCccccceeehHHHHHHHHhh
Confidence 11111 12223222 11133556899999999998764221 233345667788888887 5568999999999998
Q ss_pred Hhh---hhccccchHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHhccCchhhhhHHH
Q 004960 448 EDM---GEEILPFLDPLMGKLLAALENS-PRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRAR 523 (721)
Q Consensus 448 ~~~---~~~~~~~~~~i~~~l~~~l~~~-~~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ 523 (721)
+.. ++.+.||++.+...+.+++... ..+.|..++..++.++...++.+.||...++..+-.+++... ++.-+|.+
T Consensus 556 DD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~-~e~lLr~a 634 (978)
T KOG1993|consen 556 DDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESE-EEPLLRCA 634 (978)
T ss_pred hhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhc-cCcHHHHH
Confidence 876 5678999999999998888764 466788999999999999999999999999999988887543 34457888
Q ss_pred HHHHHHHHHHhhchhh--ccCChHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHcccCcccchhhhHHHHHhhcc
Q 004960 524 ATELLGLVAESVGRAR--MEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCN 597 (721)
Q Consensus 524 ~~~~l~~l~~~~~~~~--~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~ 597 (721)
.+.++..+..++|.+. +.|++-.+++.....-+.++..+-+..+..|+...... +.+.|-+-.+.|.++..++
T Consensus 635 lL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~-~~l~p~ll~L~p~l~~~iE 709 (978)
T KOG1993|consen 635 LLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNS-QKLTPELLLLFPHLLYIIE 709 (978)
T ss_pred HHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcc-cccCHHHHHHHHHHHHHHH
Confidence 8999999999998643 45555566655433222335557788888888876644 3355555556666665443
No 12
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=99.96 E-value=5.4e-24 Score=215.85 Aligned_cols=647 Identities=18% Similarity=0.222 Sum_probs=407.5
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCcHHHHHHHHhcC-CChhHHHHHHHHHHHhhhhhhcC----------
Q 004960 2 AQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTA-KTPNVRQLAAVLLRKKITGHWAK---------- 70 (721)
Q Consensus 2 ~~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~-~~~~vr~~a~~~l~~~i~~~w~~---------- 70 (721)
.+.|.++|++.+|+|+..|.+||.+|+++...++|-..|.+++.+. .+-+.|+.|.+.|++.+.++|..
T Consensus 3 ~~~ii~~L~~~ls~d~~vr~~AE~~l~qle~~~~f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~~~ 82 (1005)
T KOG2274|consen 3 KQAIIELLSGSLSADQNVRSQAETQLKQLELTEGFGVALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEAFRYPLI 82 (1005)
T ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHhccccchHHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhhccCCCc
Confidence 3568999999999999999999999999999999999999999885 68899999999999999999975
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhh
Q 004960 71 LSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIG 150 (721)
Q Consensus 71 ~~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~ 150 (721)
.+++.+..||+.+++.+- +++.++|+.++.+++.|+..++|+ .||+++|.+..++.+++.+...+|+.++..+.....
T Consensus 83 ~~e~~K~~IRe~Ll~~l~-~sn~ki~~~vay~is~Ia~~D~Pd-~WpElv~~i~~~l~~~n~n~i~~am~vL~el~~ev~ 160 (1005)
T KOG2274|consen 83 VSEEVKALIREQLLNLLD-DSNSKIRSAVAYAISSIAAVDYPD-EWPELVPFILKLLSSGNENSIHGAMRVLAELSDEVD 160 (1005)
T ss_pred ccHHHHHHHHHHHHhhhh-ccccccchHHHHHHHHHHhccCch-hhHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHH
Confidence 456788899999999998 689999999999999999999995 999999999999999998999999999999987653
Q ss_pred h-cc----cccHHHHHHHHHHhhCCCCCHHHHHHH--HHHHHHhhhhc---CChh---hHHHHHhhHHHHHHHHHHHhhc
Q 004960 151 Q-TF----RPHFADMQALLLKCLQDETSNRVRIAA--LKAIGSFLEFT---NDGA---EVVKFREFIPSILNVSRQCLAS 217 (721)
Q Consensus 151 ~-~~----~~~~~~l~~~l~~~l~~~~~~~vr~~a--~~~l~~l~~~~---~~~~---~~~~~~~~l~~ll~~l~~~l~~ 217 (721)
. +. ...++++...+ ..... .+...|..+ ...+.++.... .+.. ....+.+.++.+++.+...++-
T Consensus 161 ~ee~~~~~~~~l~~m~~~f-~~~~~-~s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~l~~~~~~l~h~l~~ 238 (1005)
T KOG2274|consen 161 VEEMFFVGPVSLAEMYRIF-ALTIV-YSIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQILNQFMDILEHPLQR 238 (1005)
T ss_pred HHHHhcccccchhhhhhhh-hhccc-cchhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 2 11 11223332222 12222 233333322 24343332221 1110 1122345566666655444432
Q ss_pred ---CCHHHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHhhc------------CC--------CCC------hHHHHH
Q 004960 218 ---GEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSS------------SH--------NLE------PNTRHQ 268 (721)
Q Consensus 218 ---~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~------------~~--------~~~------~~~r~~ 268 (721)
++...+....+++..+.+..|.+..+.....+...+.... .. +-+ ...-..
T Consensus 239 ~~g~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~~dsd~e~~~~~~l~i~ 318 (1005)
T KOG2274|consen 239 NDGSDFSLRMEILKCLTQLVENFPSLINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDARYDSDPEEKSVETLVIQ 318 (1005)
T ss_pred cccchHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCcccccCCchhhhChHHhhhh
Confidence 2345677888899999888877666655444433322111 00 001 123345
Q ss_pred HHHHHHHHHHHhHh--hhhhcCChHHHHHHHHh--hhc-----cCCCC------CCCCCCcHHHHHHHHHHHHHHHcCcc
Q 004960 269 AIQIISWLAKYKYN--SLKKHKLVIPILQVMCP--LLA-----ESNEA------GEDDDLAPDRAAAEVIDTMALNLAKH 333 (721)
Q Consensus 269 a~~~l~~l~~~~~~--~~~~~~~~~~il~~l~~--~l~-----~~~~~------~~~~~~~~~~~a~~~l~~l~~~~~~~ 333 (721)
.++++..++..... .+.+ -++.++..+.. .+. .|..| ++++.+..|..+...+..+...++..
T Consensus 319 i~eF~s~i~t~~~~~~ti~~--~l~~lI~~~v~y~Qlseeqie~w~sD~~~fV~dEd~~~~~~~~~rd~~~~v~~~f~~~ 396 (1005)
T KOG2274|consen 319 IVEFLSTIVTNRFLSKTIKK--NLPELIYQLVAYLQLSEEQIEVWTSDVNQFVADEDDGYTARISVRDLLLEVITTFGNE 396 (1005)
T ss_pred HHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHhhHHHHHHHhccHHHhhccCCCCchhhhhHHHHHHHHHHhccch
Confidence 66777766653221 1211 12222221111 111 11111 22333577777777777778878765
Q ss_pred ccHhHHHHHHh---------hhcCC-ChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcC-CCCHhHHHHHHHHH
Q 004960 334 VFPPVFEFASV---------SCQNA-SPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALR-DPEQFVRGAASFAL 402 (721)
Q Consensus 334 ~~~~i~~~l~~---------~l~~~-~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~-d~~~~vr~~a~~~l 402 (721)
.+..+.+.... .++.+ .|...++.+.+......+ +.....+..+...+...+. ++.|.....+++++
T Consensus 397 ~i~~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~~~--~~~dd~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i 474 (1005)
T KOG2274|consen 397 GINPIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVRID--DANDDKLIELTIMIDNGLVYQESPFLLLRAFLTI 474 (1005)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcccC--cchHHHHHHHHHHHHhhcccccCHHHHHHHHHHH
Confidence 55555554222 22333 466666666666665533 1222334455555555554 56788777999999
Q ss_pred HHHHhhhhHHHHHhhhhHHHHHHHhcc-CCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCChhHHHHHH
Q 004960 403 GQFAEYLQPEIVSHYESVLPCILNALE-DESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCM 481 (721)
Q Consensus 403 ~~l~~~~~~~~~~~~~~~l~~l~~~l~-~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l 481 (721)
+.++..... ..+.+..++...+..+. +..+.++.+|+.++..++ ....+.++.+.++..|.++....+.++-...+
T Consensus 475 ~~fs~~~~~-~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~--~~~vl~~~~p~ild~L~qlas~~s~evl~llm 551 (1005)
T KOG2274|consen 475 SKFSSSTVI-NPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYC--KVKVLLSLQPMILDGLLQLASKSSDEVLVLLM 551 (1005)
T ss_pred HHHHhhhcc-chhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhcc--CceeccccchHHHHHHHHHcccccHHHHHHHH
Confidence 988877432 12344555566665555 445668888888877776 33567799999999999999988888888999
Q ss_pred HHHHHHHHHhhhcchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCC--
Q 004960 482 SAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEF-- 559 (721)
Q Consensus 482 ~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~-- 559 (721)
++++.+++.-++.-...-..+.|.+..+.... ++++.+...+.+++-.+... .....|+....++.+++.++.+.
T Consensus 552 E~Ls~vv~~dpef~as~~skI~P~~i~lF~k~-s~DP~V~~~~qd~f~el~q~--~~~~g~m~e~~iPslisil~~~~~~ 628 (1005)
T KOG2274|consen 552 EALSSVVKLDPEFAASMESKICPLTINLFLKY-SEDPQVASLAQDLFEELLQI--AANYGPMQERLIPSLISVLQLNADK 628 (1005)
T ss_pred HHHHHHhccChhhhhhhhcchhHHHHHHHHHh-cCCchHHHHHHHHHHHHHHH--HHhhcchHHHHHHHHHHHHcCcccc
Confidence 99988887655443333444666665554432 23335555566666666542 23566777888899888887554
Q ss_pred --hhhHHHHHHHHHHHHHHcccCccc-chhhhHHHHHhhccCCCCCccCCCCCccccccCCCCCCCCchhhhhcccccee
Q 004960 560 --SELREYTHGFFSNIAGVLEDGFAQ-YLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNIS 636 (721)
Q Consensus 560 --~~~~~~~~~~l~~l~~~~~~~~~~-~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (721)
+.....++..+..+.+..++.+.. .+....|.+.++.-
T Consensus 629 ~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tl--------------------------------------- 669 (1005)
T KOG2274|consen 629 APAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITL--------------------------------------- 669 (1005)
T ss_pred cCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhhee---------------------------------------
Confidence 566777888888888877766433 34556666665442
Q ss_pred eecchhhhHHHHHHHHHHHHHHccccccch-------HHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHHhcc
Q 004960 637 VRTGVLDEKAAATQALGLFALHTKSSYAPF-------LEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQ 705 (721)
Q Consensus 637 ~~~~~~~~k~~a~~~l~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~ 705 (721)
.+.+-++-+.|=+||..++....+++..+ +-.+++++.++++ +++...++--+|.++.....+.+
T Consensus 670 -HsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLd---p~~sds~a~~VG~lV~tLit~a~ 741 (1005)
T KOG2274|consen 670 -HSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLD---PETSDSAAAFVGPLVLTLITHAS 741 (1005)
T ss_pred -ecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcC---CccchhHHHHHhHHHHHHHHHHH
Confidence 22222344556666666666544333221 3356666676665 23333344455555555444443
No 13
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.96 E-value=8.7e-23 Score=196.44 Aligned_cols=642 Identities=14% Similarity=0.122 Sum_probs=422.3
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHhc--CC-CcHHHHHHHHh----cCCChhHHHHHHHHHHHhhhhhhcCCCHHHHHHHH
Q 004960 8 LLIQFLMPDNDARRQAEDQIKRLAK--DP-QVVPALVQHLR----TAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVK 80 (721)
Q Consensus 8 ll~~~~s~d~~~r~~A~~~L~~~~~--~p-~~~~~l~~il~----~~~~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i~ 80 (721)
+++.+-||.+..-+.|.+-+..+.. -| +.|+-++..+. ..++...+..+...+..... +.+|+....--
T Consensus 99 al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ce----s~~Pe~li~~s 174 (858)
T COG5215 99 ALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCE----SEAPEDLIQMS 174 (858)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhh----ccCHHHHHHHh
Confidence 3666678888888888887776553 23 45566665554 33466667777666555443 33443333222
Q ss_pred H-----HHHHHHhhcCCHHHHHHHHHHHHH-H--HccccC-CCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhh
Q 004960 81 Q-----SLIESITLEHSAPVRRASANVVSI-I--AKYAVP-AGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQ 151 (721)
Q Consensus 81 ~-----~ll~~l~~e~~~~vr~~~~~~l~~-i--~~~~~~-~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~ 151 (721)
+ ...-.+.++++..+|-.+-.++.. + .+..+. ++.-+-++....+..++++.+.+.+++-|+..|....-.
T Consensus 175 N~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~ 254 (858)
T COG5215 175 NVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYK 254 (858)
T ss_pred hHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHH
Confidence 2 223344567889999888888764 2 222221 123345777888888899999999999999999987766
Q ss_pred cccccHHHHH-HHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCC----------------hhhHHHHHhhHHHHHHHHHHH
Q 004960 152 TFRPHFADMQ-ALLLKCLQDETSNRVRIAALKAIGSFLEFTND----------------GAEVVKFREFIPSILNVSRQC 214 (721)
Q Consensus 152 ~~~~~~~~l~-~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~----------------~~~~~~~~~~l~~ll~~l~~~ 214 (721)
.+..+++..+ .+..+++.+ ++.+|...+....+.+++...+ .+......+.+|.+++.+.+.
T Consensus 255 fm~~ymE~aL~alt~~~mks-~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q 333 (858)
T COG5215 255 FMQSYMENALAALTGRFMKS-QNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQ 333 (858)
T ss_pred HHHHHHHHHHHHHHHHHhcC-cchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhc
Confidence 6667776654 555677778 8999999998887666542211 111222456888888876542
Q ss_pred hh---cCCHHHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChH
Q 004960 215 LA---SGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVI 291 (721)
Q Consensus 215 l~---~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~ 291 (721)
-. ++++....+|..||.-++...+..+- ..++.+.-+-..++ +..-|..+.-.++++......... .++++
T Consensus 334 ~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~---~pVl~FvEqni~~~--~w~nreaavmAfGSvm~gp~~~~l-T~~V~ 407 (858)
T COG5215 334 GEDYYGDDWNPSMAASSCLQLFAQLKGDKIM---RPVLGFVEQNIRSE--SWANREAAVMAFGSVMHGPCEDCL-TKIVP 407 (858)
T ss_pred CCCccccccchhhhHHHHHHHHHHHhhhHhH---HHHHHHHHHhccCc--hhhhHHHHHHHhhhhhcCccHHHH-HhhHH
Confidence 22 23566777888888777765543322 22333333333333 445577777777777653322221 24566
Q ss_pred HHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcCcc-----ccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhh
Q 004960 292 PILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKH-----VFPPVFEFASVSCQNASPKYREAAVTAIGIISE 366 (721)
Q Consensus 292 ~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~-----~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~ 366 (721)
+.++.+...+.+.. .-+...+.+|+..++...+.. -++.....+...+.+ .+..-....+.+-.+++
T Consensus 408 qalp~i~n~m~D~~-------l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D-~p~~~~ncsw~~~nlv~ 479 (858)
T COG5215 408 QALPGIENEMSDSC-------LWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMD-CPFRSINCSWRKENLVD 479 (858)
T ss_pred hhhHHHHHhcccce-------eehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhc-cchHHhhhHHHHHhHHH
Confidence 66666666655433 456777888999888766532 223333333333322 23333444556666665
Q ss_pred ccH-------HHHHHhHHHHHHHHHhhc--CCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccC-------
Q 004960 367 GCA-------EWMKEKLESVLHIVLGAL--RDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALED------- 430 (721)
Q Consensus 367 ~~~-------~~~~~~l~~i~~~l~~~l--~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~------- 430 (721)
+.. ..+.++.+.++..+++.- .+.+...|.+++.+||.+...+++.+.+.+.++.....+.|..
T Consensus 480 h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q 559 (858)
T COG5215 480 HIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQ 559 (858)
T ss_pred hhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 543 344555666666666543 2567778999999999999998877665444444433333221
Q ss_pred ----C----ChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCC-hhHHHHHHHHHHHHHHHhhhcchhhHHH
Q 004960 431 ----E----SDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSP-RNLQETCMSAIGSVAAAAEQAFIPYAER 501 (721)
Q Consensus 431 ----~----~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~-~~v~~~~l~~l~~l~~~~~~~~~~~~~~ 501 (721)
. ..+++.+.+..|..+++..+..+.+.-+.++..+.+.+++.+ ..+...++.+|+.+....++.|..|.+.
T Consensus 560 ~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~ 639 (858)
T COG5215 560 ILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASK 639 (858)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1 245788999999999999999999999999999999999884 4456789999999999999999999999
Q ss_pred HHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCC--ChhhHHHHHHHHHHHHHHccc
Q 004960 502 VLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLE--FSELREYTHGFFSNIAGVLED 579 (721)
Q Consensus 502 i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~--~~~~~~~~~~~l~~l~~~~~~ 579 (721)
++|++.+.++.. +..+-..++..+|.++.++|. .|.+|.+.++..+.++++++ +.+++..+++++|+++...|.
T Consensus 640 fiPyl~~aln~~---d~~v~~~avglvgdlantl~~-df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga 715 (858)
T COG5215 640 FIPYLTRALNCT---DRFVLNSAVGLVGDLANTLGT-DFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGA 715 (858)
T ss_pred hhHHHHHHhcch---hHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhh
Confidence 999999999543 344556789999999999986 89999999999999999865 788999999999999999999
Q ss_pred CcccchhhhHHHHHhhccCCCCCccCCCCCccccccCCCCCCCCchhhhhccccceeeecchhhhHHHHHHHHHHHHHHc
Q 004960 580 GFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHT 659 (721)
Q Consensus 580 ~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~ 659 (721)
+|.+|++.++-.+.++-+.++.. .+ +.. ..-....+.....++-.|....
T Consensus 716 ~F~~YL~~im~L~qqas~~~p~~---------~~---~~~------------------~dy~~~~~~~v~~ayVgI~~~~ 765 (858)
T COG5215 716 NFESYLDMIMMLFQQASELDPHS---------DE---VYV------------------DDYRKNAVQLVNCAYVGIGDSS 765 (858)
T ss_pred hHHHHHHHHHHHHHHHhccCCCC---------Cc---eeH------------------HHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999997777665544321 00 000 0000012233333333333333
Q ss_pred ---cccccchHHHHHHHHHhcccCCC--hhHHHHHHHHHHHHHHHHHH
Q 004960 660 ---KSSYAPFLEESLKILVRHASYFH--EDVRYQAVFALKNILTAAHA 702 (721)
Q Consensus 660 ---~~~~~~~~~~~~~~l~~~~~~~~--~~vr~~a~~~l~~l~~~~~~ 702 (721)
.+.+.||+..+...+-....|++ +.--++|...++.+...+++
T Consensus 766 ~nr~~~v~Pyv~sif~~i~~iaeDp~~se~~traalGLigDla~mfpk 813 (858)
T COG5215 766 KNRVRSVLPYVISIFHKIGMIAEDPNGSEAHTRAALGLIGDLAGMFPK 813 (858)
T ss_pred hhhHHHhhhHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHhCCC
Confidence 35688999999888877766643 34445666666666554443
No 14
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.96 E-value=2.9e-23 Score=210.76 Aligned_cols=619 Identities=15% Similarity=0.191 Sum_probs=449.0
Q ss_pred HHHHHhcCCChHHHHHHHHHH-HHHhcC---------CCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhcCCCHHHH
Q 004960 7 LLLIQFLMPDNDARRQAEDQI-KRLAKD---------PQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLK 76 (721)
Q Consensus 7 ~ll~~~~s~d~~~r~~A~~~L-~~~~~~---------p~~~~~l~~il~~~~~~~vr~~a~~~l~~~i~~~w~~~~~~~~ 76 (721)
.++....|+|.+.|-.|+.-| .+++++ +..+..+++.+ ++.+++|+..|+-.+.-... .++++..
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL-~D~ngEVQnlAVKClg~lvs----Kvke~~l 83 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLL-EDKNGEVQNLAVKCLGPLVS----KVKEDQL 83 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHH-hccCcHHHHHHHHHHHHHHh----hchHHHH
Confidence 788889999999999999998 566543 34567788776 45789999999988877663 4788889
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHccccCC-------CCCcchHHHHHHhccC--CcHHHHHHHHHHHHHhhh
Q 004960 77 QLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPA-------GEWPDLLPFLFQFSQS--EQEEHREVALILFSSLTE 147 (721)
Q Consensus 77 ~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~-------~~~~~ll~~l~~~l~~--~~~~~~~~al~~l~~i~~ 147 (721)
+.+.+.|...+.+ ...+.|...+-.+..+.....|. ...+.+.|.+.+.+.. +....+..++..++.+..
T Consensus 84 e~~ve~L~~~~~s-~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ls 162 (1233)
T KOG1824|consen 84 ETIVENLCSNMLS-GKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLS 162 (1233)
T ss_pred HHHHHHHhhhhcc-chhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHH
Confidence 9999999999875 56677777777776665544442 1345566666666543 223467788888888888
Q ss_pred hhhhcccccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhc-CCHHHHHHH
Q 004960 148 TIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLAS-GEEDVAVIA 226 (721)
Q Consensus 148 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~-~~~~~~~~a 226 (721)
..+..+.++-..++..+.--+.+ +...||+.|+.+++.+..+.+.. .+..+++.+.+-+.. ..+.....-
T Consensus 163 r~g~ll~~fh~~il~~l~~ql~s-~R~aVrKkai~~l~~la~~~~~~--------ly~~li~~Ll~~L~~~~q~~~~rt~ 233 (1233)
T KOG1824|consen 163 RFGTLLPNFHLSILKCLLPQLQS-PRLAVRKKAITALGHLASSCNRD--------LYVELIEHLLKGLSNRTQMSATRTY 233 (1233)
T ss_pred hhcccCcchHHHHHHHHhhcccC-hHHHHHHHHHHHHHHHHHhcCHH--------HHHHHHHHHHhccCCCCchHHHHHH
Confidence 88777666666666666666667 77889999999999998877432 233333333333332 344555667
Q ss_pred HHHHHHHhcCcccchhhhHHHHHHHHHHhhcC-CCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCC
Q 004960 227 FEIFDELIESPAPLLGDSVKSIVHFSLEVSSS-HNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESN 305 (721)
Q Consensus 227 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~ 305 (721)
+++|+.+....+..++.+++.+++...+.++. ++.+++.|..+++.+..+....|..+. ++.+.+++.++..+++..
T Consensus 234 Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~--p~~pei~~l~l~yisYDP 311 (1233)
T KOG1824|consen 234 IQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEIL--PHVPEIINLCLSYISYDP 311 (1233)
T ss_pred HHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhc--ccchHHHHHHHHHhccCC
Confidence 88888888888888888888888888777632 233788999999999999988887765 568899999998887642
Q ss_pred C----CCCCCCCcHHHHHHHHHHHHHHHcCccccHhHHHHHHhhh--cCCChhhHhHHHHHHHHHhhccHHHHHHhHHHH
Q 004960 306 E----AGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSC--QNASPKYREAAVTAIGIISEGCAEWMKEKLESV 379 (721)
Q Consensus 306 ~----~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~i~~~l~~~l--~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i 379 (721)
. ++||++.. .++. ..++ .. -.++- .+-+|++|.+|..++..+...-.+.+......+
T Consensus 312 Ny~yd~~eDed~~-------~~ed----~eDd--e~----~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l 374 (1233)
T KOG1824|consen 312 NYNYDTEEDEDAM-------FLED----EEDD--EQ----DDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTL 374 (1233)
T ss_pred CCCCCCccchhhh-------hhhc----cccc--hh----ccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHh
Confidence 1 11111100 0000 0000 00 00111 234799999999999999988777777777888
Q ss_pred HHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhH---------------------HHHHhhhhHHHHHHHhccCCChHHHHH
Q 004960 380 LHIVLGALRDPEQFVRGAASFALGQFAEYLQP---------------------EIVSHYESVLPCILNALEDESDEVKEK 438 (721)
Q Consensus 380 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---------------------~~~~~~~~~l~~l~~~l~~~~~~v~~~ 438 (721)
-|.++..+++....|+...+.+.-.+....++ .+....+.++..+-+.+.+.+.+.+..
T Consensus 375 ~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~ 454 (1233)
T KOG1824|consen 375 GPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQG 454 (1233)
T ss_pred CHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhh
Confidence 89999999999999998888887776544321 112223445555555566555567888
Q ss_pred HHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCC--hhHHHHHHHHHHH-HHHHhhhcchhhHHHHHHHHHHHHhccCc
Q 004960 439 SYYALAAFCEDMGEEILPFLDPLMGKLLAALENSP--RNLQETCMSAIGS-VAAAAEQAFIPYAERVLELLKIFMVLTND 515 (721)
Q Consensus 439 a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~--~~v~~~~l~~l~~-l~~~~~~~~~~~~~~i~~~l~~~l~~~~~ 515 (721)
+...|..++...+..+.++.+.+++.+...+.+.+ ...+..++..+.. ++...++.|.|+.+.+.|.+..... +
T Consensus 455 cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~---d 531 (1233)
T KOG1824|consen 455 CFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVG---D 531 (1233)
T ss_pred HHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhc---C
Confidence 89999999999999999999999999999998874 3455555555543 4445558899999998888777663 3
Q ss_pred hhhhhHHHHHHHHHHHHHhhchh------hccCChHHHHHHHHhccC--CCChhhHHHHHHHHHHHHHHcccCcccchhh
Q 004960 516 EDLRSRARATELLGLVAESVGRA------RMEPILPPFVEAAISGFG--LEFSELREYTHGFFSNIAGVLEDGFAQYLPL 587 (721)
Q Consensus 516 ~~~~~~~~~~~~l~~l~~~~~~~------~~~~~~~~i~~~l~~~l~--~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~ 587 (721)
+-..+...|+.....+.+.+.+- .+.|++..++...++-+. +.|.+||+.++.|+|.++..+|+....++|.
T Consensus 532 ~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~ 611 (1233)
T KOG1824|consen 532 PFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPR 611 (1233)
T ss_pred chHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Confidence 45566677887777777766531 356788899888888776 5589999999999999999999988999999
Q ss_pred hHHHHHhhccCCCCCccCCCCCccccccCCCCCCCCchhhhhccccceeeecchhhhHHHHHHHHHHHHHHc-cccccch
Q 004960 588 VVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHT-KSSYAPF 666 (721)
Q Consensus 588 i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~-~~~~~~~ 666 (721)
++|.+++.+..+ -+|..|+++++.|+..- .-.+.|-
T Consensus 612 ~L~il~eRl~nE-------------------------------------------iTRl~AvkAlt~Ia~S~l~i~l~~~ 648 (1233)
T KOG1824|consen 612 TLPILLERLGNE-------------------------------------------ITRLTAVKALTLIAMSPLDIDLSPV 648 (1233)
T ss_pred HHHHHHHHHhch-------------------------------------------hHHHHHHHHHHHHHhccceeehhhh
Confidence 999999765311 15889999999997764 3356788
Q ss_pred HHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHHhcc
Q 004960 667 LEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQ 705 (721)
Q Consensus 667 ~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~ 705 (721)
+..+++.+...+.......|.....++..++++....++
T Consensus 649 l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~ 687 (1233)
T KOG1824|consen 649 LTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIP 687 (1233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 889999998887777788899999999998888755443
No 15
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.94 E-value=2.6e-21 Score=191.70 Aligned_cols=626 Identities=14% Similarity=0.176 Sum_probs=421.1
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHhcC--CC-cHHHHHHHHhc-CCChhHHHHHHHHHHHhhhhh------hc----
Q 004960 4 SLELLLIQFLMPDNDARRQAEDQIKRLAKD--PQ-VVPALVQHLRT-AKTPNVRQLAAVLLRKKITGH------WA---- 69 (721)
Q Consensus 4 ~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~--p~-~~~~l~~il~~-~~~~~vr~~a~~~l~~~i~~~------w~---- 69 (721)
.+..+|-..-+..+..|+.|..+|..=.-+ ++ .+..++.++.+ .-+.+-|+.-+-.+-+.+-+. +.
T Consensus 364 ~i~~llLkvKNG~ppmRk~~LR~ltdkar~~ga~~lfnqiLpllMs~tLeDqerhllVkvidriLyklDdlvrpYVhkIL 443 (1172)
T KOG0213|consen 364 KIMRLLLKVKNGTPPMRKSALRILTDKARNFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKIL 443 (1172)
T ss_pred HHHHHHHhhcCCCchhHHHHHHHHHHHHHhhccHHHHHHHHHHHcCccccchhhhhHHHHHHHHHHhhcccchhceeeeE
Confidence 355556666678889999999999543322 22 23444445545 346677888776666665321 11
Q ss_pred ------CCCHHHHHH-----HHHHH---------HHHHhh---cCCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHh
Q 004960 70 ------KLSPQLKQL-----VKQSL---------IESITL---EHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQF 126 (721)
Q Consensus 70 ------~~~~~~~~~-----i~~~l---------l~~l~~---e~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~ 126 (721)
.++++.... |..+| +..+.- ..++.||+..+.+++.+++.. ..|.++|+|...
T Consensus 444 vViepllided~yar~egreIisnLakaaGla~mistmrpDidn~deYVRnttarafavvasal----gip~llpfLkav 519 (1172)
T KOG0213|consen 444 VVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNKDEYVRNTTARAFAVVASAL----GIPALLPFLKAV 519 (1172)
T ss_pred EEeecceecchHHHhhchHHHHHHHHHHhhhHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHh----CcHHHHHHHHHH
Confidence 133333322 22222 222211 157899999999999999865 478899999999
Q ss_pred ccCC-cHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHH
Q 004960 127 SQSE-QEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIP 205 (721)
Q Consensus 127 l~~~-~~~~~~~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~ 205 (721)
+.|. +|+.|+.+..+..+|+...+....+++..++.++..++.| .+..||..+..++..+.+... +..+..+...+.
T Consensus 520 c~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~D-e~qkVR~itAlalsalaeaa~-Pygie~fDsVlk 597 (1172)
T KOG0213|consen 520 CGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKD-EQQKVRTITALALSALAEAAT-PYGIEQFDSVLK 597 (1172)
T ss_pred hccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcc-cchhhhhHHHHHHHHHHHhcC-CcchHHHHHHHH
Confidence 9987 8999999999999999998888889999999999999999 889999999999998887653 333444555555
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcccchhhh-HHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhH---
Q 004960 206 SILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDS-VKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKY--- 281 (721)
Q Consensus 206 ~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~--- 281 (721)
.+.. -+....-....+-++.++.++....+....+ ...++-.++.-+.++ +++.+...+.++..+|...+
T Consensus 598 pLwk----gir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sP--DeemkkivLKVv~qcc~t~Gv~~ 671 (1172)
T KOG0213|consen 598 PLWK----GIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSP--DEEMKKIVLKVVKQCCATDGVEP 671 (1172)
T ss_pred HHHH----HHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCC--hHHHHHHHHHHHHHHhcccCCCH
Confidence 5544 3333333444455566666654432222222 222333333333344 56677777777777764321
Q ss_pred hhhhhcCChHHHHH-------------------HHHhhhccC---------CCCCCCCCCcHHHHHHHHHHHHHHHcCc-
Q 004960 282 NSLKKHKLVIPILQ-------------------VMCPLLAES---------NEAGEDDDLAPDRAAAEVIDTMALNLAK- 332 (721)
Q Consensus 282 ~~~~~~~~~~~il~-------------------~l~~~l~~~---------~~~~~~~~~~~~~~a~~~l~~l~~~~~~- 332 (721)
.+.+ .+.++.++. .-..+...- -++-.|+....|+......+.+...+|.
T Consensus 672 ~y~r-~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~ 750 (1172)
T KOG0213|consen 672 AYIR-FDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAA 750 (1172)
T ss_pred HHHh-hhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccc
Confidence 1111 111222211 111111000 0111122233455555666666655552
Q ss_pred ----cccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhh
Q 004960 333 ----HVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEY 408 (721)
Q Consensus 333 ----~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 408 (721)
.....++.-+...++.++.... ..+..|+.+...+...++++++.++..++..|+++.+.||..|+..++.++..
T Consensus 751 diderleE~lidgil~Afqeqtt~d~-vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~V 829 (1172)
T KOG0213|consen 751 DIDERLEERLIDGILYAFQEQTTEDS-VMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKV 829 (1172)
T ss_pred cccHHHHHHHHHHHHHHHHhcccchh-hhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH
Confidence 2223445544444444432222 45678888888888888999999999999999999999999999999999987
Q ss_pred hhHHHHH-hhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhh-hccccchHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 004960 409 LQPEIVS-HYESVLPCILNALEDESDEVKEKSYYALAAFCEDMG-EEILPFLDPLMGKLLAALENSPRNLQETCMSAIGS 486 (721)
Q Consensus 409 ~~~~~~~-~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~-~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~ 486 (721)
+...... .+..+=-.|.+.|....++|--..+.|+..++...+ ....|-+.++++.|..++.+....++++.+..++.
T Consensus 830 lktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~ 909 (1172)
T KOG0213|consen 830 LKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGT 909 (1172)
T ss_pred HHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHH
Confidence 7543222 233333446788888889999999999999988876 34667888999999999999999999999999999
Q ss_pred HHHHhhhcchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCChhhHHHH
Q 004960 487 VAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYT 566 (721)
Q Consensus 487 l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ 566 (721)
|+...++... ..+.+-+...++..-......+|..+.+++|.+++++|| .+++..+++.|+..+...|.+.
T Consensus 910 IadrgpE~v~--aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGP-------qdVLatLlnnLkvqeRq~RvcT 980 (1172)
T KOG0213|consen 910 IADRGPEYVS--AREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGP-------QDVLATLLNNLKVQERQNRVCT 980 (1172)
T ss_pred HHhcCcccCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCH-------HHHHHHHHhcchHHHHHhchhh
Confidence 9987665222 122333333333322223456889999999999999998 5678888888886666666666
Q ss_pred HHHHHHHHHHcccCcccchhhhHHHHHhhccCCCCCccCCCCCccccccCCCCCCCCchhhhhccccceeeecchhhhHH
Q 004960 567 HGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKA 646 (721)
Q Consensus 567 ~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 646 (721)
-.+++-+++.+|. | .++|.|++... ++...+..
T Consensus 981 tvaIaIVaE~c~p----F--tVLPalmneYr-----------------------------------------tPe~nVQn 1013 (1172)
T KOG0213|consen 981 TVAIAIVAETCGP----F--TVLPALMNEYR-----------------------------------------TPEANVQN 1013 (1172)
T ss_pred hhhhhhhhhhcCc----h--hhhHHHHhhcc-----------------------------------------CchhHHHH
Confidence 6667777666665 2 67888885321 23334567
Q ss_pred HHHHHHHHHHHHccccccchHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHH
Q 004960 647 AATQALGLFALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTA 699 (721)
Q Consensus 647 ~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~ 699 (721)
..+++++.+....|+.-..|+-.+.+.|...+-|.+..=|+.|+.++.++.-.
T Consensus 1014 GVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg 1066 (1172)
T KOG0213|consen 1014 GVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALG 1066 (1172)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcC
Confidence 78899999999999999999999999999999999999999999988887654
No 16
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.94 E-value=4.6e-22 Score=202.20 Aligned_cols=559 Identities=13% Similarity=0.171 Sum_probs=409.8
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHH-HHHcc--ccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccccHH
Q 004960 82 SLIESITLEHSAPVRRASANVVS-IIAKY--AVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFA 158 (721)
Q Consensus 82 ~ll~~l~~e~~~~vr~~~~~~l~-~i~~~--~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~ 158 (721)
.|+..+.+ +|+..|-.+..-+. .+-.. ....+..+.++..+.+.+.+.+.+++..|.+|++-+....++. .+.
T Consensus 9 ~Llekmts-sDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~---~le 84 (1233)
T KOG1824|consen 9 NLLEKMTS-SDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKED---QLE 84 (1233)
T ss_pred HHHHHccC-CCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHH---HHH
Confidence 46666665 78888887766553 33221 1122467889999999999999999999999999998766542 455
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcC----ChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 004960 159 DMQALLLKCLQDETSNRVRIAALKAIGSFLEFTN----DGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELI 234 (721)
Q Consensus 159 ~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~----~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~ 234 (721)
.++.-+...+-+ +..+.|..+.-.|...+...+ .......+..+.|.+.+.+.. +.+...++..+++.+..+.
T Consensus 85 ~~ve~L~~~~~s-~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~--qe~~sai~~e~lDil~d~l 161 (1233)
T KOG1824|consen 85 TIVENLCSNMLS-GKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISK--QEDVSAIKCEVLDILADVL 161 (1233)
T ss_pred HHHHHHhhhhcc-chhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhh--cccchhhHHHHHHHHHHHH
Confidence 566555544434 344455444333333332221 111122234555555554322 2234457888999999998
Q ss_pred cCcccchhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCc
Q 004960 235 ESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLA 314 (721)
Q Consensus 235 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~ 314 (721)
...+.++.++-..++.++...+... -..+|..++..++.++...+.. .+..+++.++..|.... ..+
T Consensus 162 sr~g~ll~~fh~~il~~l~~ql~s~--R~aVrKkai~~l~~la~~~~~~-----ly~~li~~Ll~~L~~~~------q~~ 228 (1233)
T KOG1824|consen 162 SRFGTLLPNFHLSILKCLLPQLQSP--RLAVRKKAITALGHLASSCNRD-----LYVELIEHLLKGLSNRT------QMS 228 (1233)
T ss_pred HhhcccCcchHHHHHHHHhhcccCh--HHHHHHHHHHHHHHHHHhcCHH-----HHHHHHHHHHhccCCCC------chH
Confidence 8888877776667777666544443 4678999999999888765543 25567777777776553 234
Q ss_pred HHHHHHHHHHHHHHHcCc---cccHhHHHHHHhhh---cCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcC
Q 004960 315 PDRAAAEVIDTMALNLAK---HVFPPVFEFASVSC---QNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALR 388 (721)
Q Consensus 315 ~~~~a~~~l~~l~~~~~~---~~~~~i~~~l~~~l---~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~ 388 (721)
.-+....++..++...|. ...+.+++.+.++. +.++-..|+.++++++.+...++..+.++.+.++..+++.+.
T Consensus 229 ~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yis 308 (1233)
T KOG1824|consen 229 ATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYIS 308 (1233)
T ss_pred HHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhc
Confidence 556677888888887773 34566777777766 666778999999999999999999999999999988887763
Q ss_pred -CC---------------------------------CHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChH
Q 004960 389 -DP---------------------------------EQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDE 434 (721)
Q Consensus 389 -d~---------------------------------~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~ 434 (721)
|| +|.||++|++|+..+...-.+....+++.+-|.++..+++....
T Consensus 309 YDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEn 388 (1233)
T KOG1824|consen 309 YDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREEN 388 (1233)
T ss_pred cCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhh
Confidence 22 27899999999999988776666678888999999999999888
Q ss_pred HHHHHHHHHHHHHHhhhh---------------------ccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhh
Q 004960 435 VKEKSYYALAAFCEDMGE---------------------EILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQ 493 (721)
Q Consensus 435 v~~~a~~al~~l~~~~~~---------------------~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~ 493 (721)
|+.....+...+....+. .+......|+..+.+.+.+.....+..++..+..++...++
T Consensus 389 Vk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~ 468 (1233)
T KOG1824|consen 389 VKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPG 468 (1233)
T ss_pred HHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcc
Confidence 998888888877754421 11223456666777777766656677888889999999999
Q ss_pred cchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCChhhHHHHHHHHHHH
Q 004960 494 AFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNI 573 (721)
Q Consensus 494 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l 573 (721)
...++.+.++|.+...++..++ ....+..++.++.......+++.|.|+.+.+.+.+..+.+++...+...++.....+
T Consensus 469 ~l~~~~~slvpgI~~~l~DkSs-ss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~l 547 (1233)
T KOG1824|consen 469 ALAQHIPSLVPGIIYSLNDKSS-SSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQL 547 (1233)
T ss_pred hhhhcccccchhhhhhcCCccc-hHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHH
Confidence 9999999999998888865432 234566677777666667788999999999999999999999888888888888888
Q ss_pred HHHccc-------CcccchhhhHHHHHhhccCCCCCccCCCCCccccccCCCCCCCCchhhhhccccceeeecchhhhHH
Q 004960 574 AGVLED-------GFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKA 646 (721)
Q Consensus 574 ~~~~~~-------~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 646 (721)
++...+ ++.||...+....++.+.. +..+.|+|+
T Consensus 548 vkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a---------------------------------------~d~DqeVke 588 (1233)
T KOG1824|consen 548 VKVIRPLQPPSSFDASPYVKTMYDCTLQRLKA---------------------------------------TDSDQEVKE 588 (1233)
T ss_pred HHHhcccCCCccCCCChhHHHHHHHHHHHHhc---------------------------------------ccccHHHHH
Confidence 887743 5667777777776655532 233457899
Q ss_pred HHHHHHHHHHHHccccccchHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHH
Q 004960 647 AATQALGLFALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHA 702 (721)
Q Consensus 647 ~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~ 702 (721)
.|+.|+|.++.++|+.+...++.+++.+.+++. ++..|-.|++++..+..+.-.
T Consensus 589 raIscmgq~i~~fgD~l~~eL~~~L~il~eRl~--nEiTRl~AvkAlt~Ia~S~l~ 642 (1233)
T KOG1824|consen 589 RAISCMGQIIANFGDFLGNELPRTLPILLERLG--NEITRLTAVKALTLIAMSPLD 642 (1233)
T ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHh--chhHHHHHHHHHHHHHhccce
Confidence 999999999999999999999999999999987 688999999998877665433
No 17
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=1.7e-21 Score=193.45 Aligned_cols=617 Identities=15% Similarity=0.197 Sum_probs=387.1
Q ss_pred ChhHHHHHHHHhcCC--ChHHHHHHHHHHHHHhcCCCcHHHHHHHHhcC-CChhHHHHHHHHHHHhhhhhhcCCCHHHHH
Q 004960 1 MAQSLELLLIQFLMP--DNDARRQAEDQIKRLAKDPQVVPALVQHLRTA-KTPNVRQLAAVLLRKKITGHWAKLSPQLKQ 77 (721)
Q Consensus 1 m~~~l~~ll~~~~s~--d~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~-~~~~vr~~a~~~l~~~i~~~w~~~~~~~~~ 77 (721)
|.+.+++++.+...| |+..|+||.+++++++..|+.|..|.+++.+. .++.+|.++...|...++..+...+...+.
T Consensus 1 ~mddiEqav~a~ndp~vdsa~KqqA~~y~~qiKsSp~aw~Icie~l~~~ts~d~vkf~clqtL~e~vrekyne~nl~elq 80 (980)
T KOG2021|consen 1 MMDDIEQAVNAVNDPRVDSATKQQAIEYLNQIKSSPNAWEICIELLINETSNDLVKFYCLQTLIELVREKYNEANLNELQ 80 (980)
T ss_pred CchHHHHHHHhhCCCcccHHHHHHHHHHHHhhcCCccHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHhhccCCHHHHH
Confidence 778999999999876 89999999999999999999999999999875 789999999999999999888888999999
Q ss_pred HHHHHHHHHHhh-----c---CCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhh
Q 004960 78 LVKQSLIESITL-----E---HSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETI 149 (721)
Q Consensus 78 ~i~~~ll~~l~~-----e---~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~ 149 (721)
.||..++..+.- + .++.+++.+++.++.+.-..+|. .|+.++..+...+.-+... .++..+..++-..
T Consensus 81 lvR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~-~WnsfF~dlmsv~~~~s~~---~~~dfflkvllaI 156 (980)
T KOG2021|consen 81 LVRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPD-CWNSFFDDLMSVFQVDSAI---SGLDFFLKVLLAI 156 (980)
T ss_pred HHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHhcccch---hhHHHHHHHHHHh
Confidence 999999887752 1 26789999999999999988885 8999999998887643211 1222222222111
Q ss_pred h------------hc----------c-cccHHHHHHHHHHhhC---CCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhh
Q 004960 150 G------------QT----------F-RPHFADMQALLLKCLQ---DETSNRVRIAALKAIGSFLEFTNDGAEVVKFREF 203 (721)
Q Consensus 150 ~------------~~----------~-~~~~~~l~~~l~~~l~---~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ 203 (721)
+ ++ + ...++.++..+.+++. ...++.+-..++.|++++++|..-+- + .-..+
T Consensus 157 dsEiad~dv~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSWIdInL-I-aNd~f 234 (980)
T KOG2021|consen 157 DSEIADQDVIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSWIDINL-I-ANDYF 234 (980)
T ss_pred hhHhhhccccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhhhhhhh-h-hchhH
Confidence 1 10 0 1234666666666664 21378899999999999999975331 1 11334
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcccchhh-----------------------------hH---------
Q 004960 204 IPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGD-----------------------------SV--------- 245 (721)
Q Consensus 204 l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~-----------------------------~~--------- 245 (721)
++.+... +. -+++|.+|+.|+.+++....+-+++ .+
T Consensus 235 ~nLLy~f----l~--ieelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l~lfg~~s~dq~~d~df~e~vskLitg~gv 308 (980)
T KOG2021|consen 235 LNLLYKF----LN--IEELRIAACNCILAIVSKKMKPMDKLALLNMLNQTLELFGYHSADQMDDLDFWESVSKLITGFGV 308 (980)
T ss_pred HHHHHHH----Hh--HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhhccccccCchHHHHHHHHHhhcce
Confidence 4544443 22 4667788888888877643111100 00
Q ss_pred -------------------------HHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH-hHhh-hh--hcCChHHHHHH
Q 004960 246 -------------------------KSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKY-KYNS-LK--KHKLVIPILQV 296 (721)
Q Consensus 246 -------------------------~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~-~~~~-~~--~~~~~~~il~~ 296 (721)
..+++.+++.+.++ .+++....+-+|...... ++.. .. ....+..++..
T Consensus 309 el~~i~s~lnseld~~~kqn~l~~ll~~vpyllq~l~~e--~ddit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~illa 386 (980)
T KOG2021|consen 309 ELTIIISQLNSELDTLYKQNVLSILLEIVPYLLQFLNNE--FDDITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILLA 386 (980)
T ss_pred eeehhHhhhhhccCHHHHHHHHHHHHHHHHHHHHHhccc--chhhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHHH
Confidence 01122222222222 112222222222221110 0000 00 11235556666
Q ss_pred HHhhhccC-----CCCCCC-C----CCcHHHHHHHHHHHHHHHcCccccHhHHHHHHhh---hcCCChhhHhHHHHHHHH
Q 004960 297 MCPLLAES-----NEAGED-D----DLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVS---CQNASPKYREAAVTAIGI 363 (721)
Q Consensus 297 l~~~l~~~-----~~~~~~-~----~~~~~~~a~~~l~~l~~~~~~~~~~~i~~~l~~~---l~~~~~~~r~~al~~l~~ 363 (721)
++..++.. +++.++ + ..+.|......+++++...++.+...+-+.+... .+..+|...+.|+..+..
T Consensus 387 i~kqicydemy~nddn~tg~EeEa~f~e~RkkLk~fqdti~~idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~ 466 (980)
T KOG2021|consen 387 IFKQICYDEMYFNDDNVTGDEEEAFFEEVRKKLKNFQDTIVVIDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYN 466 (980)
T ss_pred HHHHHhccHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 66655543 222111 1 1345556666667776655544444444444433 345689999999999999
Q ss_pred HhhccHHHHH----------HhHHHHHHHHHhh--cCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHH--Hhcc
Q 004960 364 ISEGCAEWMK----------EKLESVLHIVLGA--LRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCIL--NALE 429 (721)
Q Consensus 364 i~~~~~~~~~----------~~l~~i~~~l~~~--l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~--~~l~ 429 (721)
++++.+.... ..+..+++.+... +.++|+.|+..-+..+.++...+..+ ..+++-++.+.+ ++++
T Consensus 467 lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~e-sq~ip~vL~aFld~rglh 545 (980)
T KOG2021|consen 467 LGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYNKFFSTE-SQKIPLVLNAFLDSRGLH 545 (980)
T ss_pred HhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHHHHHhcc-hhhhHHHHHHHccchhcc
Confidence 9987653211 1233444544432 35889999999999999988777543 336666666665 4577
Q ss_pred CCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCC------------hhHHHHHHHHHHHHHHHhh---hc
Q 004960 430 DESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSP------------RNLQETCMSAIGSVAAAAE---QA 494 (721)
Q Consensus 430 ~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~------------~~v~~~~l~~l~~l~~~~~---~~ 494 (721)
+.+..||.+|...+.++++..++.+.||.+.+++.+..++...- .+-+..+++++|.++.... +.
T Consensus 546 n~ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL~~~vtt~N~~s~~lt~fddqlyIfEtiGviI~l~n~paE~ 625 (980)
T KOG2021|consen 546 NKNENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLLHIKVTTINAQSDNLTIFDDQLYIFETIGVIITLNNSPAEL 625 (980)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCcCccccccccccccceeeecceEEEeCCCCCHHH
Confidence 77889999999999999999999999999999999999984321 1224466777776654211 11
Q ss_pred chhhHHHHH---------HHHHHHHhccCchhh-hhHH---HHHHHHHHHHHhhchhh-------ccCChHHHHHHHHhc
Q 004960 495 FIPYAERVL---------ELLKIFMVLTNDEDL-RSRA---RATELLGLVAESVGRAR-------MEPILPPFVEAAISG 554 (721)
Q Consensus 495 ~~~~~~~i~---------~~l~~~l~~~~~~~~-~~~~---~~~~~l~~l~~~~~~~~-------~~~~~~~i~~~l~~~ 554 (721)
-..|.+.++ ..+...+. ++++. .... .++-++|.+++...... .......+.+.++..
T Consensus 626 qaay~~~litpl~~~~~igl~~a~la--sde~~pv~Ia~c~~~lmaig~lakgf~~rlvt~~qvg~~~vf~~~ldvil~~ 703 (980)
T KOG2021|consen 626 QAAYANTLITPLILDQIIGLLFAQLA--SDEASPVVIAECHHILMAIGTLAKGFHIRLVTENQVGNMVVFSNILDVILVT 703 (980)
T ss_pred HHHHHhcccChHHHHHHHHHHHHHHh--ccccccHHHHHHHHHHHHHHHHhhcccccCcchhcccHHHHHHHHHHHHHHH
Confidence 112333222 22222222 22221 1111 22334455554332100 011123444444444
Q ss_pred cC--CCChhhHHHHHHHHHHHHHHcccCcccchhhhHHHHHhhccCCCCCccCCCCCccccccCCCCCCCCchhhhhccc
Q 004960 555 FG--LEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSV 632 (721)
Q Consensus 555 l~--~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (721)
+. .....+|..+...+++++.++|+...||+|+.+..+++.+..
T Consensus 704 ls~f~k~E~iRsavrft~hRmI~~lg~~vlPfipklie~lL~s~d~---------------------------------- 749 (980)
T KOG2021|consen 704 LSFFNKFENIRSAVRFTFHRMIPILGNKVLPFIPKLIELLLSSTDL---------------------------------- 749 (980)
T ss_pred HhhccccchhHHHHHHHHHHHHHhcchhhhcchHHHHHHHHhcCCH----------------------------------
Confidence 43 236779999999999999999999999999999999954321
Q ss_pred cceeeecchhhhHHHHHHHHHHHHHHccccccchHHHHHHHHHhcc
Q 004960 633 RNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVRHA 678 (721)
Q Consensus 633 ~~~~~~~~~~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 678 (721)
.+-..-+..+..+...++.+..+.+++.++.++-+.
T Consensus 750 ----------kEmvdfl~flsQLihkfk~~~~~ilnqmlppll~rI 785 (980)
T KOG2021|consen 750 ----------KEMVDFLGFLSQLIHKFKTDCYQILNQMLPPLLNRI 785 (980)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112445666666777777777788888777766654
No 18
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=99.92 E-value=6.6e-19 Score=171.90 Aligned_cols=475 Identities=18% Similarity=0.262 Sum_probs=307.6
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHhcCCCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHHH
Q 004960 5 LELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLI 84 (721)
Q Consensus 5 l~~ll~~~~s~d~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i~~~ll 84 (721)
+-.+.+....+|+..+++|++.|.+|+..|+.|+..-.|+.++..|+.+..|..+|.+.+...|+-+|++.+..||+.+.
T Consensus 16 lDkVVttfyqg~g~~q~qAq~iLtkFq~~PdaWtkad~IL~~S~~pqskyiALs~LdklIttkWkllp~~~r~GiRnyvv 95 (1053)
T COG5101 16 LDKVVTTFYQGDGRKQEQAQRILTKFQELPDAWTKADYILNNSKLPQSKYIALSLLDKLITTKWKLLPEGMRQGIRNYVV 95 (1053)
T ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHhCchHHHHHHHHHhcccCcchhhhHHHHHHHHHHhhhhhCCcHHHHHHHHHHH
Confidence 34567778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhc-CCH-------HHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhh-------
Q 004960 85 ESITLE-HSA-------PVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETI------- 149 (721)
Q Consensus 85 ~~l~~e-~~~-------~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~------- 149 (721)
+.+.+. ++. .+.+.+-.++-.|+.++||+ .||.++|.+++.-+ .+.++.+..+.++..+.+..
T Consensus 96 ~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP~-nWP~FIpeli~~S~-~s~~vCeNnmivLklLsEEvFdfSaeq 173 (1053)
T COG5101 96 QLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWPR-NWPTFIPELINVSQ-ISMEVCENNMIVLKLLSEEVFDFSAEQ 173 (1053)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhccc-ccchhhHHHHhhcc-chHHHHhccHHHHHHhHHHHHhccHHH
Confidence 887632 233 34456666777889999996 99999999998766 45566666676776665542
Q ss_pred ---------hhcccccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCH
Q 004960 150 ---------GQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEE 220 (721)
Q Consensus 150 ---------~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~ 220 (721)
.+++...+++++..+.+.|....++..-.+.+..+..++.|.+-. .. +...+++.+..-+. ..+
T Consensus 174 mTq~k~~~LkNqm~~EF~qIF~lc~qiLE~~~~~SLi~ATLesllrfl~wiPl~--yI----feTnIieLv~~~f~-s~p 246 (1053)
T COG5101 174 MTQVKKRLLKNQMKIEFPQIFGLCKQILEYSRDESLIEATLESLLRFLEWIPLD--YI----FETNIIELVLEHFN-SMP 246 (1053)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhCchh--HH----HHHHHHHHHHHHhc-cCC
Confidence 133445678888888888876578888889999999998887532 11 12233333222222 356
Q ss_pred HHHHHHHHHHHHHhcCcc--c-------ch---------------------------------hhhHHHHHHHH------
Q 004960 221 DVAVIAFEIFDELIESPA--P-------LL---------------------------------GDSVKSIVHFS------ 252 (721)
Q Consensus 221 ~~~~~a~~~l~~l~~~~~--~-------~~---------------------------------~~~~~~l~~~~------ 252 (721)
+.|..+++||.+++.... . .+ ..++..+..++
T Consensus 247 d~r~~tl~CLtEi~~L~~~pq~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~~~~~neq~Fvq~LA~fL~s~~~~ 326 (1053)
T COG5101 247 DTRVATLSCLTEIVDLGRHPQENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEVYGGMDKNEQIFVQKLAQFLSSLYEV 326 (1053)
T ss_pred chhHHHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHcccChhHHHHHHHHHHHHHHHHHH
Confidence 667777777777765320 0 00 00111111111
Q ss_pred -HHhhcCCC-----------------C-ChHHHHHHHHHHHHHHHHhHhhhhhc--------------------------
Q 004960 253 -LEVSSSHN-----------------L-EPNTRHQAIQIISWLAKYKYNSLKKH-------------------------- 287 (721)
Q Consensus 253 -~~~~~~~~-----------------~-~~~~r~~a~~~l~~l~~~~~~~~~~~-------------------------- 287 (721)
+..+++.+ + +.++-..+++.|..++..--..+++.
T Consensus 327 ~~~lLE~~e~~e~llnah~YLiqiSrInereiFkt~leyW~klVadLy~E~q~lp~tem~Pli~ls~~s~~istnpn~~~ 406 (1053)
T COG5101 327 YISLLEAREMAENLLNAHGYLIQISRINEREIFKTALEYWNKLVADLYSEFQRLPATEMSPLIQLSVGSQAISTNPNQDS 406 (1053)
T ss_pred HHHHhcChhHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCcchhccccchhccCCcchhc
Confidence 11111111 0 12334456677766653211111000
Q ss_pred ------CChHHHHH----HHHhhhccCCC-----CC----------CCCCCcHHHHHHHHHHHHHHHcCccccHhHHHHH
Q 004960 288 ------KLVIPILQ----VMCPLLAESNE-----AG----------EDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFA 342 (721)
Q Consensus 288 ------~~~~~il~----~l~~~l~~~~~-----~~----------~~~~~~~~~~a~~~l~~l~~~~~~~~~~~i~~~l 342 (721)
+.+..++. +++..+..+++ ++ +.|....++...+++-.+....-.+.-...+..+
T Consensus 407 ~~pLrkhiY~~ilsqLrlvlienMvrPEEVliVendegEivRefvketDtI~lYksmRevLvyLthL~v~Dte~~mi~Kl 486 (1053)
T COG5101 407 TKPLRKHIYIGILSQLRLVLIENMVRPEEVLIVENDEGEIVREFVKETDTIELYKSMREVLVYLTHLIVDDTEKYMIGKL 486 (1053)
T ss_pred ccchHHHHHHHHHHHHHHHHHHcCCCcceEEEEECCCcHHHHHHhccccHhHHHHHHhhHHHHHhhhhhhhHHHHHHHHH
Confidence 01112222 22233333322 11 1122344455556666666544433333445555
Q ss_pred HhhhcCC--ChhhHhHHHHHHHHHhhccHHHHHH-hHHHHHHHH-----HhhcCCCCHhHHHHHHHHHHHHHhhhhHHHH
Q 004960 343 SVSCQNA--SPKYREAAVTAIGIISEGCAEWMKE-KLESVLHIV-----LGALRDPEQFVRGAASFALGQFAEYLQPEIV 414 (721)
Q Consensus 343 ~~~l~~~--~~~~r~~al~~l~~i~~~~~~~~~~-~l~~i~~~l-----~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 414 (721)
...+... +|..-..-++++|+++..+.+.... ++-.++..+ .+..+|....|.......+|++-+++.. ..
T Consensus 487 arq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMyvvGQYpRFLka-hw 565 (1053)
T COG5101 487 ARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMYVVGQYPRFLKA-HW 565 (1053)
T ss_pred HHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecceeeeeccchHHHHH-HH
Confidence 5555554 5677888999999999887654332 233333332 3344677788888888999998888753 35
Q ss_pred HhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhh--------ccccchHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 004960 415 SHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGE--------EILPFLDPLMGKLLAALENSPRNLQETCMSAIGS 486 (721)
Q Consensus 415 ~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~--------~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~ 486 (721)
.++..++..|.+.++.....|+..||..+-.+++.++- ...|++..|+..+.+.-.+-.+.-+....+|.+.
T Consensus 566 ~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~dL~pqQ~htfYeAcg~ 645 (1053)
T COG5101 566 SFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTGDLEPQQKHTFYEACGM 645 (1053)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcccCChHHHhHHHHHHhH
Confidence 68899999999999999899999999999999999852 3457888888877776555444333333444444
Q ss_pred HHH
Q 004960 487 VAA 489 (721)
Q Consensus 487 l~~ 489 (721)
+++
T Consensus 646 vIs 648 (1053)
T COG5101 646 VIS 648 (1053)
T ss_pred HHh
Confidence 443
No 19
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.90 E-value=1e-18 Score=198.77 Aligned_cols=634 Identities=15% Similarity=0.127 Sum_probs=401.0
Q ss_pred hHHHHHHHHhcCC--ChHHHHHHHHHHHHHhcC-----------CCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhc
Q 004960 3 QSLELLLIQFLMP--DNDARRQAEDQIKRLAKD-----------PQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWA 69 (721)
Q Consensus 3 ~~l~~ll~~~~s~--d~~~r~~A~~~L~~~~~~-----------p~~~~~l~~il~~~~~~~vr~~a~~~l~~~i~~~w~ 69 (721)
.++..+++.+.+. +.+.|.+|...|..+.+. .++++.|...|.+ .++.+|..|+..|.+.-..
T Consensus 13 ~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~s-g~~~vk~nAaaaL~nLS~~--- 88 (2102)
T PLN03200 13 ASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRS-GTLGAKVNAAAVLGVLCKE--- 88 (2102)
T ss_pred HHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcC-CCHHHHHHHHHHHHHHhcC---
Confidence 4577788888755 678899999999876542 4578889998865 4688898888676665322
Q ss_pred CCCHHHHHH-----HHHHHHHHHhhcCCHHHHHHHHHHHHHHHccccCCCC------CcchHHHHHHhccCCcH---HHH
Q 004960 70 KLSPQLKQL-----VKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGE------WPDLLPFLFQFSQSEQE---EHR 135 (721)
Q Consensus 70 ~~~~~~~~~-----i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~------~~~ll~~l~~~l~~~~~---~~~ 135 (721)
++.+.. ....|+..|.+ .+...|..++.++..++.....++. -...+|.|...+++++. ..+
T Consensus 89 ---e~nk~~Iv~~GaIppLV~LL~s-Gs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~ 164 (2102)
T PLN03200 89 ---EDLRVKVLLGGCIPPLLSLLKS-GSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVE 164 (2102)
T ss_pred ---HHHHHHHHHcCChHHHHHHHHC-CCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHH
Confidence 233322 23356777764 6899999999999999865310112 26678999999987642 244
Q ss_pred HHHHHHHHHhhhhhhhccccc-HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHH
Q 004960 136 EVALILFSSLTETIGQTFRPH-FADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQC 214 (721)
Q Consensus 136 ~~al~~l~~i~~~~~~~~~~~-~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~ 214 (721)
..+..+|.+++...++.-... -...++.+..++.+ +++.++..|+.++..++...++......-.+.+|.++. +
T Consensus 165 ~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS-~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~----L 239 (2102)
T PLN03200 165 GLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSS-GNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLK----L 239 (2102)
T ss_pred HHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHH----H
Confidence 566788888886543221111 13467888999988 89999999999998887664433222223467888888 4
Q ss_pred hhc-CCHHHHHHHHHHHHHHhcCcccchhhhHH-HHHHHHHHhhcCC-------CCChHHHHHHHHHHHHHHHHhHhhhh
Q 004960 215 LAS-GEEDVAVIAFEIFDELIESPAPLLGDSVK-SIVHFSLEVSSSH-------NLEPNTRHQAIQIISWLAKYKYNSLK 285 (721)
Q Consensus 215 l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~l~~~~~~~~~~~-------~~~~~~r~~a~~~l~~l~~~~~~~~~ 285 (721)
+.+ .++.++..|.++|..++...+..-...+. ..++.+++.+..+ +.....+.+|++.+.+++...+..+.
T Consensus 240 L~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~ 319 (2102)
T PLN03200 240 LGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALIL 319 (2102)
T ss_pred HccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHH
Confidence 543 45688999999999999875433222211 1233333333322 12356789999999999864322110
Q ss_pred h-------cCChHHHHH---HHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHc-----------------Ccccc---
Q 004960 286 K-------HKLVIPILQ---VMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNL-----------------AKHVF--- 335 (721)
Q Consensus 286 ~-------~~~~~~il~---~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~-----------------~~~~~--- 335 (721)
. ......+.. .+-.++...+...+.........+...|..+...- ++..+
T Consensus 320 ~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~ 399 (2102)
T PLN03200 320 YLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRK 399 (2102)
T ss_pred HHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHH
Confidence 0 000000001 01011111110000000000001112222222211 11111
Q ss_pred ---HhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhH-HHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhH
Q 004960 336 ---PPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKL-ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQP 411 (721)
Q Consensus 336 ---~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 411 (721)
....+.+...+...+...+..+++++..++.+..+...... ...+|.+++.|.++++.+|..|+++++.++.....
T Consensus 400 L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~nde 479 (2102)
T PLN03200 400 LNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDE 479 (2102)
T ss_pred HHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence 11223344455666788999999999999987555443332 24689999999999999999999999999875543
Q ss_pred HHHHh-hhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccch--HHHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q 004960 412 EIVSH-YESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFL--DPLMGKLLAALENSPRNLQETCMSAIGSVA 488 (721)
Q Consensus 412 ~~~~~-~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~ 488 (721)
..... -.+.+|.|++.|.+++..++..|+|+|.+++.. ++.....+ .+.++.|++++.+.+...+..+..++..++
T Consensus 480 nr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~-~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi 558 (2102)
T PLN03200 480 SKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCH-SEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLV 558 (2102)
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 22222 258999999999999999999999999999864 22233333 267888899999999999999999999987
Q ss_pred HHhhhcchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhcc-C--ChHHHHHHHHhccCCCChhhHHH
Q 004960 489 AAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARME-P--ILPPFVEAAISGFGLEFSELREY 565 (721)
Q Consensus 489 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~--~~~~i~~~l~~~l~~~~~~~~~~ 565 (721)
...... .++.+..++.. ++...+..+++.++.+......+.+. . -...-++.+...++.++..+++.
T Consensus 559 ~~~d~~-------~I~~Lv~LLls---dd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~ 628 (2102)
T PLN03200 559 RTADAA-------TISQLTALLLG---DLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEK 628 (2102)
T ss_pred hccchh-------HHHHHHHHhcC---CChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHH
Confidence 643221 22444455533 23345566788887776433221111 0 01245677777788889999999
Q ss_pred HHHHHHHHHHHcccCcccc-hhhhHHHHHhhccCCCCCccCCCCCccccccCCCCCCCCchhhhhccccceeeecchhhh
Q 004960 566 THGFFSNIAGVLEDGFAQY-LPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDE 644 (721)
Q Consensus 566 ~~~~l~~l~~~~~~~~~~~-l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (721)
+..++++++..-.+..... ....+|+++..++ +...+.
T Consensus 629 Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLs-----------------------------------------s~~~~v 667 (2102)
T PLN03200 629 AASVLADIFSSRQDLCESLATDEIINPCIKLLT-----------------------------------------NNTEAV 667 (2102)
T ss_pred HHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHh-----------------------------------------cCChHH
Confidence 9999999986443322211 2345666665442 222346
Q ss_pred HHHHHHHHHHHHHHcccc-ccchHHH-HHHHHHhcccCCChhHHHHHHHHHHHHHHHHH
Q 004960 645 KAAATQALGLFALHTKSS-YAPFLEE-SLKILVRHASYFHEDVRYQAVFALKNILTAAH 701 (721)
Q Consensus 645 k~~a~~~l~~~~~~~~~~-~~~~~~~-~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~ 701 (721)
++.|.++|+.+....... -..++.. .++.|.+++++.+.+++..|+.+|..+++...
T Consensus 668 ~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e 726 (2102)
T PLN03200 668 ATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPE 726 (2102)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCch
Confidence 888999999998644322 2233443 78889999999999999999999999988653
No 20
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.89 E-value=4.2e-19 Score=201.96 Aligned_cols=626 Identities=15% Similarity=0.127 Sum_probs=402.3
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHhcC---------CCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhh-----hcC
Q 004960 5 LELLLIQFLMPDNDARRQAEDQIKRLAKD---------PQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGH-----WAK 70 (721)
Q Consensus 5 l~~ll~~~~s~d~~~r~~A~~~L~~~~~~---------p~~~~~l~~il~~~~~~~vr~~a~~~l~~~i~~~-----w~~ 70 (721)
+..++..+.+++...|..|...|..+..+ ++.++.|+.+|.+. ++..|..|+-.|....... |..
T Consensus 60 IP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~nk~~Iv~~GaIppLV~LL~sG-s~eaKe~AA~AL~sLS~~~~~D~~~~~ 138 (2102)
T PLN03200 60 MPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDLRVKVLLGGCIPPLLSLLKSG-SAEAQKAAAEAIYAVSSGGLSDHVGSK 138 (2102)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHHHCC-CHHHHHHHHHHHHHHHcCcchhhhhhh
Confidence 44566666688888888888777666543 57889999999765 6889999998888875431 211
Q ss_pred CCHHHHHHHHHHHHHHHhhc--CCHHHHHHHHHHHHHHHccccCCCCCc-----chHHHHHHhccCCcHHHHHHHHHHHH
Q 004960 71 LSPQLKQLVKQSLIESITLE--HSAPVRRASANVVSIIAKYAVPAGEWP-----DLLPFLFQFSQSEQEEHREVALILFS 143 (721)
Q Consensus 71 ~~~~~~~~i~~~ll~~l~~e--~~~~vr~~~~~~l~~i~~~~~~~~~~~-----~ll~~l~~~l~~~~~~~~~~al~~l~ 143 (721)
+- ........|+..+..- .+..++..++.++..++.... +.|. ..+|.+.+.++++++..+..|..++.
T Consensus 139 I~--v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~e--n~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa 214 (2102)
T PLN03200 139 IF--STEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTD--GFWSATLEAGGVDILVKLLSSGNSDAQANAASLLA 214 (2102)
T ss_pred hh--hhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCcc--chHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 10 1123345566666631 134467777888888886542 3553 36999999999999999999999888
Q ss_pred Hhhhhhhhccccc-HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHH----Hhhc-
Q 004960 144 SLTETIGQTFRPH-FADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQ----CLAS- 217 (721)
Q Consensus 144 ~i~~~~~~~~~~~-~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~----~l~~- 217 (721)
.++...++..... -...+|.+.+++.+++++.+|..|.++|.+++....+......-.+-+|.+++.+.. +++.
T Consensus 215 ~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~ 294 (2102)
T PLN03200 215 RLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGE 294 (2102)
T ss_pred HHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccc
Confidence 8876543321111 135578899999764677999999999999987543322222224668888875431 1111
Q ss_pred CCHHHHHHHHHHHHHHhcCcccchhhhHH---------------HHHHHHHHhhcCCCCChHHH----HHHHHHHHHHHH
Q 004960 218 GEEDVAVIAFEIFDELIESPAPLLGDSVK---------------SIVHFSLEVSSSHNLEPNTR----HQAIQIISWLAK 278 (721)
Q Consensus 218 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~---------------~l~~~~~~~~~~~~~~~~~r----~~a~~~l~~l~~ 278 (721)
.+...+..|.++|.+++...+.++..... ..+..++..+..+ ++..+ ..+.+.|..+++
T Consensus 295 ~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~--~~~~~~i~~~~v~~~LV~Llr 372 (2102)
T PLN03200 295 FAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSS--AESTRAFDPTVIEQILVKLLK 372 (2102)
T ss_pred cchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCc--hhhhhhccccccHHHHHHHhC
Confidence 12445789999999998765332111100 0111122222221 22222 123455666665
Q ss_pred HhHhhhhhcCChHHHHH----------------------HHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcCc---c
Q 004960 279 YKYNSLKKHKLVIPILQ----------------------VMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAK---H 333 (721)
Q Consensus 279 ~~~~~~~~~~~~~~il~----------------------~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~---~ 333 (721)
+..... ....+.+ .++.++...+ ...+..+..++..++..-.+ .
T Consensus 373 ~k~p~~----vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~-------~evQ~~Av~aL~~L~~~~~e~~~a 441 (2102)
T PLN03200 373 PRDTKL----VQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMAT-------ADVQEELIRALSSLCCGKGGLWEA 441 (2102)
T ss_pred CCCCch----hHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCC-------HHHHHHHHHHHHHHhCCCHHHHHH
Confidence 431110 0011111 2222333222 45677778888887754221 1
Q ss_pred cc-HhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhH-HHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhH
Q 004960 334 VF-PPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKL-ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQP 411 (721)
Q Consensus 334 ~~-~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 411 (721)
+. ...++.+.+.+.+.+...+..++++++.++.+..+...... ...+|.+.++|.++++.+|..|+|+|++++.. .+
T Consensus 442 Ii~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~-~~ 520 (2102)
T PLN03200 442 LGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCH-SE 520 (2102)
T ss_pred HHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-cH
Confidence 11 22477788888888889999999999999976654322222 36789999999999999999999999999985 33
Q ss_pred HHHHhh--hhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q 004960 412 EIVSHY--ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAA 489 (721)
Q Consensus 412 ~~~~~~--~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~ 489 (721)
..+..+ .+.+|.|++.|.+.+.+++..++++|.+++...... .++.+..++...++.++..++.+++.+..
T Consensus 521 qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~-------~I~~Lv~LLlsdd~~~~~~aL~vLgnIls 593 (2102)
T PLN03200 521 DIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAA-------TISQLTALLLGDLPESKVHVLDVLGHVLS 593 (2102)
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchh-------HHHHHHHHhcCCChhHHHHHHHHHHHHHh
Confidence 444444 489999999999999999999999999998765432 33556677888888999999999998876
Q ss_pred Hhhhcc-h-hh--HHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhcc-CChHHHHHHHHhccCCCChhhHH
Q 004960 490 AAEQAF-I-PY--AERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARME-PILPPFVEAAISGFGLEFSELRE 564 (721)
Q Consensus 490 ~~~~~~-~-~~--~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~~i~~~l~~~l~~~~~~~~~ 564 (721)
.....- . .- -..-+|.|.+++... +...+..|..+++.+...- ++... -.....++.++..++..+.+++.
T Consensus 594 l~~~~d~~~~g~~~~ggL~~Lv~LL~sg---s~~ikk~Aa~iLsnL~a~~-~d~~~avv~agaIpPLV~LLss~~~~v~k 669 (2102)
T PLN03200 594 VASLEDLVREGSAANDALRTLIQLLSSS---KEETQEKAASVLADIFSSR-QDLCESLATDEIINPCIKLLTNNTEAVAT 669 (2102)
T ss_pred hcchhHHHHHhhhccccHHHHHHHHcCC---CHHHHHHHHHHHHHHhcCC-hHHHHHHHHcCCHHHHHHHHhcCChHHHH
Confidence 544321 1 00 123567777777643 3356777888888887422 11100 11123455555667777888999
Q ss_pred HHHHHHHHHHHHcccCc-ccchh-hhHHHHHhhccCCCCCccCCCCCccccccCCCCCCCCchhhhhccccceeeecchh
Q 004960 565 YTHGFFSNIAGVLEDGF-AQYLP-LVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVL 642 (721)
Q Consensus 565 ~~~~~l~~l~~~~~~~~-~~~l~-~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (721)
.+..+++++......+- ..++. ..+|.|++.++.. ..
T Consensus 670 eAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~-----------------------------------------d~ 708 (2102)
T PLN03200 670 QSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS-----------------------------------------SI 708 (2102)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC-----------------------------------------Ch
Confidence 99999999987433322 22233 3777787665321 12
Q ss_pred hhHHHHHHHHHHHHHHccccccchHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHH
Q 004960 643 DEKAAATQALGLFALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAH 701 (721)
Q Consensus 643 ~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~ 701 (721)
+.+..|+.+|..++......-.---...++.|.+++.+-++.+|+.|+.+|..+++...
T Consensus 709 ~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~ 767 (2102)
T PLN03200 709 EVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFP 767 (2102)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCC
Confidence 45788899998887765422111123456778888888889999999999999987644
No 21
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.89 E-value=1.9e-19 Score=175.14 Aligned_cols=623 Identities=14% Similarity=0.146 Sum_probs=397.4
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHhcC--CC-cHHHHHHHHhc-CCChhHHHHHHHHHHHhhhh------hhc-----
Q 004960 5 LELLLIQFLMPDNDARRQAEDQIKRLAKD--PQ-VVPALVQHLRT-AKTPNVRQLAAVLLRKKITG------HWA----- 69 (721)
Q Consensus 5 l~~ll~~~~s~d~~~r~~A~~~L~~~~~~--p~-~~~~l~~il~~-~~~~~vr~~a~~~l~~~i~~------~w~----- 69 (721)
+..+|-..-+..+.-|+.+...|..-.-+ |. .+..++.++.+ .-+.+-|+...-++-+.+-+ .+.
T Consensus 170 v~rllLkvKNG~~~mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~r~LeDqerhl~vk~idr~Ly~lddl~~pyvhkILv 249 (975)
T COG5181 170 VYRLLLKVKNGGKRMRMEGLRILTDKAVNFGAAAVFNKVLPMLMSRELEDQERHLVVKLIDRLLYGLDDLKVPYVHKILV 249 (975)
T ss_pred HHHHHhhcccCCchhhHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHhcccccccceeeEEE
Confidence 44555555677888899988888543333 22 23444444444 44667788887777666532 111
Q ss_pred -----CCCHHHHH-----HHHHHHHHH--Hh----------hcCCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhc
Q 004960 70 -----KLSPQLKQ-----LVKQSLIES--IT----------LEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFS 127 (721)
Q Consensus 70 -----~~~~~~~~-----~i~~~ll~~--l~----------~e~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l 127 (721)
.++++.+. +|..+|... |. ...++.||+..+.+++.++... .-++++|+|....
T Consensus 250 Vv~pllided~~~r~~g~eii~nL~~~~Gl~~~vs~mrpDi~~~deYVRnvt~ra~~vva~al----gv~~llpfl~a~c 325 (975)
T COG5181 250 VVGPLLIDEDLKRRCMGREIILNLVYRCGLGFSVSSMRPDITSKDEYVRNVTGRAVGVVADAL----GVEELLPFLEALC 325 (975)
T ss_pred EeeccccCccHHHhcccHHHHHHHHHHhccceeeeeccCCcccccHHHHHHHHHHHHHHHHhh----CcHHHHHHHHHHh
Confidence 12332221 122222111 11 1157899999999999999865 4678999999999
Q ss_pred cCC-cHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHH
Q 004960 128 QSE-QEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPS 206 (721)
Q Consensus 128 ~~~-~~~~~~~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ 206 (721)
.|. +|+.|+.+..+..+|+...+....+++..++..+..++.| .+.-||..+..+++.+.+... +..+..+...+-.
T Consensus 326 ~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D-~~~~vRi~tA~alS~lae~~~-Pygie~fd~vl~p 403 (975)
T COG5181 326 GSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKD-RSRFVRIDTANALSYLAELVG-PYGIEQFDEVLCP 403 (975)
T ss_pred cCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhc-cceeeeehhHhHHHHHHHhcC-CcchHHHHHHHHH
Confidence 886 8999999999999999998888888999999999999999 888899999999998887653 2233344444444
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHhcCc-ccchhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhH---h
Q 004960 207 ILNVSRQCLASGEEDVAVIAFEIFDELIESP-APLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKY---N 282 (721)
Q Consensus 207 ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~---~ 282 (721)
+.+ -.+...-....+-+++.+.++-.. |.+............+..+.++ +++.+...+.+...+.+... .
T Consensus 404 Lw~----g~~~hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~sp--deemkk~~l~v~~~C~~v~~~tp~ 477 (975)
T COG5181 404 LWE----GASQHRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSP--DEEMKKDLLVVERICDKVGTDTPW 477 (975)
T ss_pred HHH----HHHhcCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCc--hhhcchhHHHHHHHHhccCCCCHH
Confidence 443 222222222233333333333221 2333333333444444444333 22222222222222221110 0
Q ss_pred hhhh----------------------------------cCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHH
Q 004960 283 SLKK----------------------------------HKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMAL 328 (721)
Q Consensus 283 ~~~~----------------------------------~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~ 328 (721)
..+. ..--+.+...++..+++ +....|..++.+.+....
T Consensus 478 ~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~~v~~kil~~~~D-------e~ep~r~m~a~~vsri~~ 550 (975)
T COG5181 478 KLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDPRVSRKILEYYSD-------EPEPYRKMNAGLVSRIFS 550 (975)
T ss_pred HHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCChHHHHHHHhhccC-------CcchhhhhhhHHHHHHHH
Confidence 0000 00001111111111111 112334445555565555
Q ss_pred HcCc-----cccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHH
Q 004960 329 NLAK-----HVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALG 403 (721)
Q Consensus 329 ~~~~-----~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~ 403 (721)
.+|. .....++..+...++.++... --.+.+|+.+.....-..+++++.++..+++.|+++.|.||..|+...+
T Consensus 551 ~lg~~~~dErleerl~d~il~Afqeq~~t~-~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~ 629 (975)
T COG5181 551 RLGRLGFDERLEERLYDSILNAFQEQDTTV-GLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMG 629 (975)
T ss_pred hcccccccHHHHHHHHHHHHHHHHhccccc-cEEEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence 5552 222333444433333322111 0112334444444444567889999999999999999999999999999
Q ss_pred HHHhhhhHHHH-HhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhh-hccccchHHHHHHHHHhhcCCChhHHHHHH
Q 004960 404 QFAEYLQPEIV-SHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMG-EEILPFLDPLMGKLLAALENSPRNLQETCM 481 (721)
Q Consensus 404 ~l~~~~~~~~~-~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~-~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l 481 (721)
.++..+..... +.+..+=..|.+.+....++|--..+.|+..+....+ ..++|-+.+|++.|..++.+....+..+.+
T Consensus 630 sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti 709 (975)
T COG5181 630 SLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTI 709 (975)
T ss_pred HHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHH
Confidence 99877653222 2344455557788888889999999999998888776 457888999999999999999999999999
Q ss_pred HHHHHHHHHhhhcchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCChh
Q 004960 482 SAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSE 561 (721)
Q Consensus 482 ~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~ 561 (721)
..++.++...++...+ .+.+-+...++..-.+-+.++|..|.+++|.+++++|| .+++..+++.++..+..
T Consensus 710 ~lvg~I~~~~peyi~~--rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGP-------qdvL~~LlnnLkvqeRq 780 (975)
T COG5181 710 ALVGTICMNSPEYIGV--REWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGP-------QDVLDILLNNLKVQERQ 780 (975)
T ss_pred HHHHHHHhcCcccCCH--HHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCH-------HHHHHHHHhcchHHHHH
Confidence 9999988876653321 22333333333221223446888999999999999998 56788888888876777
Q ss_pred hHHHHHHHHHHHHHHcccCcccchhhhHHHHHhhccCCCCCccCCCCCccccccCCCCCCCCchhhhhccccceeeecch
Q 004960 562 LREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGV 641 (721)
Q Consensus 562 ~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (721)
.|...-.+++-+++..|.- .++|.|++-.. |+.
T Consensus 781 ~RvctsvaI~iVae~cgpf------sVlP~lm~dY~-----------------------------------------TPe 813 (975)
T COG5181 781 QRVCTSVAISIVAEYCGPF------SVLPTLMSDYE-----------------------------------------TPE 813 (975)
T ss_pred hhhhhhhhhhhhHhhcCch------hhHHHHHhccc-----------------------------------------Cch
Confidence 7777777788888777762 57888884221 233
Q ss_pred hhhHHHHHHHHHHHHHHccccccchHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHHh
Q 004960 642 LDEKAAATQALGLFALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAI 703 (721)
Q Consensus 642 ~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~ 703 (721)
..+....+++++.+....|.+-..|+-.+.+.|...+.|.++.=|+.|++.+.+++-++.+.
T Consensus 814 ~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gt 875 (975)
T COG5181 814 ANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGT 875 (975)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCc
Confidence 34567788999999999999999999999999999999999999999999999988765443
No 22
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1.7e-15 Score=154.60 Aligned_cols=586 Identities=15% Similarity=0.206 Sum_probs=358.2
Q ss_pred hHHHHHHHHhcCC-ChHHHHHHHHHHHHHhcCCCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhcCCCHHHHHHHHH
Q 004960 3 QSLELLLIQFLMP-DNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQ 81 (721)
Q Consensus 3 ~~l~~ll~~~~s~-d~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i~~ 81 (721)
.++.+++..++++ +.+....++++|..++..|+.+..-.++++.++.+.+|.++|..|.-.+..+|+..+++...+++-
T Consensus 7 a~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~S~Q~w~~s~~llQ~~k~~evqyFGAltL~~ki~~~~e~~~~~~~~qL~~ 86 (982)
T KOG2022|consen 7 ATVEELVTTLYSHRNHENDAITQKWLQDAQCSQQGWHFSWQLLQPDKSSEVQYFGALTLHDKINTRWEECPANEAVQLKL 86 (982)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCchhHHHHHhHHHHHHHHHhhhccCChhHHHHHHH
Confidence 4678888899876 778899999999999999999999999998888888999999999999999999999999999999
Q ss_pred HHHHHHhhc--CCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCc-H----HHH-HHHHHHHHHhhhhhh---
Q 004960 82 SLIESITLE--HSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQ-E----EHR-EVALILFSSLTETIG--- 150 (721)
Q Consensus 82 ~ll~~l~~e--~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~-~----~~~-~~al~~l~~i~~~~~--- 150 (721)
.++..+... .+.-|-+..+-+++.++-+..|+ .||.-+..++..++... + ..+ ...+..|..+.....
T Consensus 87 klf~~l~~~~g~~~lVl~kl~~sLasl~l~~~~d-~Wp~ai~~vi~~l~~q~~p~v~ad~n~~~~Le~Ls~~p~e~q~~~ 165 (982)
T KOG2022|consen 87 KLFLILSRFAGGPKLVLNKLCASLASLILYMVPD-LWPTAIQDVIPTLQGQASPLVLADINCEILLEVLSFMPAEFQHVT 165 (982)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHHHHccc-cCCchHHHHHHHHhcccCccccchhhHHHHHHHhccCcHhhhhcc
Confidence 988887632 24556677777777776655563 89999999998887532 1 111 122223322222110
Q ss_pred ----------hcccccHHHHHHHHHHhhCCCC--CH-----HHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHH-
Q 004960 151 ----------QTFRPHFADMQALLLKCLQDET--SN-----RVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSR- 212 (721)
Q Consensus 151 ----------~~~~~~~~~l~~~l~~~l~~~~--~~-----~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~- 212 (721)
..+........+++...++... .+ -++.++++|...++.+...+. .....++..++..+.
T Consensus 166 l~~t~~~~l~~eLak~~~~v~~l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~~Wi~~i~~~~--~~c~~i~~~ll~~l~~ 243 (982)
T KOG2022|consen 166 LPLTRRSVLRGELAKFSENVISLLEVVLRGGSNSTSSLINLIFKQAAVDCVEQWIRYISLTG--MDCDQITQVLLDVLGQ 243 (982)
T ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHhcccc--ccHHHHHHHHHHHHhh
Confidence 1111222333444444444311 12 356678888887766432110 001111111111111
Q ss_pred --------------------------------------------------------HH------hhcCC--HHHHHHHHH
Q 004960 213 --------------------------------------------------------QC------LASGE--EDVAVIAFE 228 (721)
Q Consensus 213 --------------------------------------------------------~~------l~~~~--~~~~~~a~~ 228 (721)
+. ..+.+ .+.....+.
T Consensus 244 s~~~~~~a~~~cmt~~~n~la~~~l~~~v~~i~q~d~~~y~nti~~li~i~~~~l~e~~~~~~~~e~~d~~~e~i~~~~~ 323 (982)
T KOG2022|consen 244 STEGSYEAAEKCMTIFGNVLADDTLLASVNDIIQPDCEFYRNTITLLISICLGILQEVSGKIQEEENADASEEEIVTFLA 323 (982)
T ss_pred hccccccchhhhcccchhhhccchHHHHHHHhcChHHHhccchHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 00 00011 111111111
Q ss_pred HHHHHhcCccc-ch--------hhhHHHHHHHHHHhhcCC---CCChHHHHHHHHHHHHHHHHhHhh------hhh----
Q 004960 229 IFDELIESPAP-LL--------GDSVKSIVHFSLEVSSSH---NLEPNTRHQAIQIISWLAKYKYNS------LKK---- 286 (721)
Q Consensus 229 ~l~~l~~~~~~-~~--------~~~~~~l~~~~~~~~~~~---~~~~~~r~~a~~~l~~l~~~~~~~------~~~---- 286 (721)
+....++...+ .+ ...+-.+++.+..+..-+ -+++.+...++.+|..+.+..... .++
T Consensus 324 i~v~~~En~l~~lid~~~~g~~~e~v~rlv~vll~~t~~PG~ypveE~~S~~~l~FW~tL~dei~~~~~e~~~~~~~i~~ 403 (982)
T KOG2022|consen 324 ITVSSVENHLPTLIDCAAQGEQSELVIRLVQVLLVLTNFPGQYPVEEIVSDRTLIFWYTLQDEIMQTINETQQIKKQILS 403 (982)
T ss_pred HHHHHHhcccHHHHHHHhhcchHHHHHHHHHHHHHHhCCCCCccHHHHHhHHHHHHHHHHHHHHHHhhhccCCcchhHHH
Confidence 11111221111 11 111222333333322211 123445566777887776432111 111
Q ss_pred cCChHHHHHHHHhhhccCCC--------CCCCCCCcHHHHHHHHHHHHHHHcCccccHhHHHHHHhhhcCCC-----hhh
Q 004960 287 HKLVIPILQVMCPLLAESNE--------AGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNAS-----PKY 353 (721)
Q Consensus 287 ~~~~~~il~~l~~~l~~~~~--------~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~i~~~l~~~l~~~~-----~~~ 353 (721)
.+.+.++++.+++.+.-+.+ ++.+...+.|+.-.+.+...=..+|+..+..+++.+.+.+.+.+ |..
T Consensus 404 ~qIy~qlvei~l~K~~~Ps~e~~~~W~S~s~e~F~~YR~diSD~~~~~Y~ilgd~ll~~L~~~l~q~~aa~d~~p~s~~~ 483 (982)
T KOG2022|consen 404 QQIYAQLVEILLKKLALPSKEIWLSWSSDSREQFESYRKDISDLLMSSYSILGDGLLDFLIDTLEQALAAGDEDPDSLNR 483 (982)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCchHHHH
Confidence 12334555666665544332 22222234455555566555566666677777777877776655 889
Q ss_pred HhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhh-cCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCC
Q 004960 354 REAAVTAIGIISEGCAEWMKEKLESVLHIVLGA-LRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDES 432 (721)
Q Consensus 354 r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~-l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~ 432 (721)
-++.+..+..+++..+....+.++.++...... ++-.++..-..+...+|.++.++++. .-|+...+|.|+++|+.+.
T Consensus 484 tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~-P~~ln~sl~~L~~~Lh~sk 562 (982)
T KOG2022|consen 484 TEACIFQFQSVAEYLGETESTWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEH-PMYLNPSLPLLFQGLHNSK 562 (982)
T ss_pred HHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcC-CcccCchHHHHHHHhcCch
Confidence 999999999999988876666666666654443 23458889999999999999998642 3478899999999998653
Q ss_pred hHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCC--ChhHHHHHHHHHHHHHHHhh-hcchhhHHHHHHHHHHH
Q 004960 433 DEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENS--PRNLQETCMSAIGSVAAAAE-QAFIPYAERVLELLKIF 509 (721)
Q Consensus 433 ~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~--~~~v~~~~l~~l~~l~~~~~-~~~~~~~~~i~~~l~~~ 509 (721)
....+...+..+++.++.++.||.++++.....++... ..+.+..++.++|.+.+... +...+|+..++..+..-
T Consensus 563 --~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~q 640 (982)
T KOG2022|consen 563 --ESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQ 640 (982)
T ss_pred --HHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHH
Confidence 34456677999999999999999999999998888775 47789999999999988776 66667877777666555
Q ss_pred Hhcc-----CchhhhhHHH-HHHHHHHHHHhhch-----------hhccC--------ChHHHHHHHHhccC--CCChhh
Q 004960 510 MVLT-----NDEDLRSRAR-ATELLGLVAESVGR-----------ARMEP--------ILPPFVEAAISGFG--LEFSEL 562 (721)
Q Consensus 510 l~~~-----~~~~~~~~~~-~~~~l~~l~~~~~~-----------~~~~~--------~~~~i~~~l~~~l~--~~~~~~ 562 (721)
++.. .+++..+|.. -+.+++.+..+... +.-.| ...++|+.+-..+. -.+.++
T Consensus 641 le~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~~~s~v 720 (982)
T KOG2022|consen 641 LEINLAPGIDDQENHLRIAFQLNTISALFTSLINKKDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSMWLGLSDV 720 (982)
T ss_pred HHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCccccccchhhhccccccCCHHHHHHHHHHHHHHHHHHHhcchhH
Confidence 5432 1222233322 34667776654421 00111 11233333322221 235556
Q ss_pred HHHHHHHHHHHHHHcccCc-ccchhhhHHHHHh
Q 004960 563 REYTHGFFSNIAGVLEDGF-AQYLPLVVPLAFS 594 (721)
Q Consensus 563 ~~~~~~~l~~l~~~~~~~~-~~~l~~i~~~ll~ 594 (721)
.+.++..+..=....++.| .|+++.+.+.+.+
T Consensus 721 ve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r 753 (982)
T KOG2022|consen 721 VEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVR 753 (982)
T ss_pred HHHHHHHHHhccccccccchhhhHHHHHHHHHH
Confidence 6666555555566667778 8888999988876
No 23
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=3.1e-17 Score=162.57 Aligned_cols=529 Identities=17% Similarity=0.134 Sum_probs=342.4
Q ss_pred hcCCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCc-HHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHh
Q 004960 89 LEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQ-EEHREVALILFSSLTETIGQTFRPHFADMQALLLKC 167 (721)
Q Consensus 89 ~e~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~-~~~~~~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~ 167 (721)
.|+...+|.....+.......... .+-..++|...+.+++.. ...|.+.....+..... .....+....++..+.+-
T Consensus 27 ~d~~~~v~~~ml~a~~~~~~~~~~-~~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~-~~~~d~~~~~~~~~~~~~ 104 (569)
T KOG1242|consen 27 EDRRIDVRGNMLEAGEAAINQHGD-QNVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFH-LQIVDPRPISIIEILLEE 104 (569)
T ss_pred CCcchhhHHhHHHHHHHHHHhhhH-HHHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHh-ccccCcchhHHHHHHHHh
Confidence 356677887777776555432211 133556777777777543 34444444444444432 223344556777777777
Q ss_pred hCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCccc-chhhhHH
Q 004960 168 LQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAP-LLGDSVK 246 (721)
Q Consensus 168 l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~ 246 (721)
+.- +++.+|.+...|+..+....... .. ..+.+.+.+ .+....-..+..+...+..+.....- .+.+ .
T Consensus 105 ~~t-ps~~~q~~~~~~l~~~~~~~~~~-~~---~~~l~~l~~----ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~--~ 173 (569)
T KOG1242|consen 105 LDT-PSKSVQRAVSTCLPPLVVLSKGL-SG---EYVLELLLE----LLTSTKIAERAGAAYGLAGLVNGLGIESLKE--F 173 (569)
T ss_pred cCC-CcHHHHHHHHHHhhhHHHHhhcc-CH---HHHHHHHHH----HhccccHHHHhhhhHHHHHHHcCcHHhhhhh--h
Confidence 766 89999999999998776544221 11 223333333 44434455555565555555543321 1111 1
Q ss_pred HHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHH
Q 004960 247 SIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTM 326 (721)
Q Consensus 247 ~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l 326 (721)
.++..+.....+.. +...|..+.-.....+..-+.. ..+|+.++++.++....+.. ..+|.++..+...+
T Consensus 174 ~~l~~l~~ai~dk~-~~~~re~~~~a~~~~~~~Lg~~--~EPyiv~~lp~il~~~~d~~-------~~Vr~Aa~~a~kai 243 (569)
T KOG1242|consen 174 GFLDNLSKAIIDKK-SALNREAALLAFEAAQGNLGPP--FEPYIVPILPSILTNFGDKI-------NKVREAAVEAAKAI 243 (569)
T ss_pred hHHHHHHHHhcccc-hhhcHHHHHHHHHHHHHhcCCC--CCchHHhhHHHHHHHhhccc-------hhhhHHHHHHHHHH
Confidence 12222222333332 2222322222222223222211 12567777777776665544 57899999999999
Q ss_pred HHHcCccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHH
Q 004960 327 ALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFA 406 (721)
Q Consensus 327 ~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~ 406 (721)
..+++..-+..+++.+...+....|+.+.+++..+|.++...++.+...+++++|.+.+.|.|.++.||.++..++.+++
T Consensus 244 ~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~ 323 (569)
T KOG1242|consen 244 MRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFG 323 (569)
T ss_pred HHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 99888766666766666666666999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 004960 407 EYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGS 486 (721)
Q Consensus 407 ~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~ 486 (721)
..... +.+..++|.|++.+.++...+.. +...|+.- ......-.|-+.-+++.+.+-+.+.+...+..+...+++
T Consensus 324 svidN---~dI~~~ip~Lld~l~dp~~~~~e-~~~~L~~t-tFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidN 398 (569)
T KOG1242|consen 324 SVIDN---PDIQKIIPTLLDALADPSCYTPE-CLDSLGAT-TFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDN 398 (569)
T ss_pred Hhhcc---HHHHHHHHHHHHHhcCcccchHH-HHHhhcce-eeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHH
Confidence 88753 34678899999999998643332 23333210 001122236677888888888888888888899999999
Q ss_pred HHHHh--hhcchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCChhhHH
Q 004960 487 VAAAA--EQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELRE 564 (721)
Q Consensus 487 l~~~~--~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~ 564 (721)
++.-. +....||++.++|.+...+... ..++|..+...++.+.+.+|.+.|....+.+.+. ..+....+.
T Consensus 399 m~~LveDp~~lapfl~~Llp~lk~~~~d~---~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~e~----~~~~k~~~~- 470 (569)
T KOG1242|consen 399 MCKLVEDPKDLAPFLPSLLPGLKENLDDA---VPEVRAVAARALGALLERLGEVSFDDLIPELSET----LTSEKSLVD- 470 (569)
T ss_pred HHHhhcCHHHHhhhHHHHhhHHHHHhcCC---ChhHHHHHHHHHHHHHHHHHhhcccccccHHHHh----hccchhhhh-
Confidence 99988 5778999999999999888543 4567888999999999999877773334444443 433222211
Q ss_pred HHHHHHHHHHHHcccCcccchhhhHHHHHhhccCCCCCccCCCCCccccccCCCCCCCCchhhhhccccceeeecchhhh
Q 004960 565 YTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDE 644 (721)
Q Consensus 565 ~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (721)
...+...++..++..-..++..++|.++..+..... ++ ..
T Consensus 471 -~~g~aq~l~evl~~~~v~~~~~~~~~~~a~~~~~~~---------~~------------------------------~~ 510 (569)
T KOG1242|consen 471 -RSGAAQDLSEVLAGLGVEKVEDILPEILANASSVLI---------DE------------------------------RI 510 (569)
T ss_pred -hHHHhhhHHHHHhcccchHHHHHHHHHHHHHhhccc---------hh------------------------------hh
Confidence 123334455555555566777888888765432210 00 11
Q ss_pred HHHHHHHHHHHHHHccccccchHHHHHHHHHhcccCCChhHHHHHHHHH
Q 004960 645 KAAATQALGLFALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAVFAL 693 (721)
Q Consensus 645 k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l 693 (721)
+..-+++++.+-..++..+.+|+.++++.+.+.+.+.++.+|..+.++=
T Consensus 511 ~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad~de~~~~~~~~~~ 559 (569)
T KOG1242|consen 511 RDGVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLADNDEKGRDTALEAG 559 (569)
T ss_pred ccCeeehhhccchhhhHHhHHHHHHHHHHHHHHhhhcCCccccchhhhh
Confidence 2234455666666778899999999999999999888899888887653
No 24
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.84 E-value=2.4e-16 Score=156.90 Aligned_cols=545 Identities=13% Similarity=0.129 Sum_probs=346.1
Q ss_pred ChHHHHHHHHHHHHHhc---CCCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHHHHHHhhcCC
Q 004960 16 DNDARRQAEDQIKRLAK---DPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEHS 92 (721)
Q Consensus 16 d~~~r~~A~~~L~~~~~---~p~~~~~l~~il~~~~~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i~~~ll~~l~~e~~ 92 (721)
|.-+|+.......-+.+ -|...++|-.+..+..+.+-|+.+.-+...+..-.-..+-+ ....+.+.+-.++. |.+
T Consensus 489 deYVRnttarafavvasalgip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlp-hl~~lv~ii~~gl~-De~ 566 (1172)
T KOG0213|consen 489 DEYVRNTTARAFAVVASALGIPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLP-HLKPLVKIIEHGLK-DEQ 566 (1172)
T ss_pred cHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhh-hhHHHHHHHHHhhc-ccc
Confidence 44455554444443333 34444433333333346777777764444432211111111 12223333444444 678
Q ss_pred HHHHHHHHHHHHHHHccccCC--CCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccccH-HHHHHHHHHhhC
Q 004960 93 APVRRASANVVSIIAKYAVPA--GEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHF-ADMQALLLKCLQ 169 (721)
Q Consensus 93 ~~vr~~~~~~l~~i~~~~~~~--~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~-~~l~~~l~~~l~ 169 (721)
..||...|.+++.++....|- +.+..++..|++.+++..-....+-+.+++.++-........++ .+++-++.+-.+
T Consensus 567 qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~ 646 (1172)
T KOG0213|consen 567 QKVRTITALALSALAEAATPYGIEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFG 646 (1172)
T ss_pred hhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhC
Confidence 999999999999999866663 36788888888888766556666778888888866655444443 577778888888
Q ss_pred CCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcccchhhhHHHHH
Q 004960 170 DETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIV 249 (721)
Q Consensus 170 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~ 249 (721)
+ ++.+.+...++.+.+++....-..... ..+.+|.++..+..--...+....++....-..++...+. .+.+..+
T Consensus 647 s-PDeemkkivLKVv~qcc~t~Gv~~~y~-r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~--~~~v~R~- 721 (1172)
T KOG0213|consen 647 S-PDEEMKKIVLKVVKQCCATDGVEPAYI-RFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGS--DPIVSRV- 721 (1172)
T ss_pred C-ChHHHHHHHHHHHHHHhcccCCCHHHH-hhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCc--hHHHHHH-
Confidence 8 999999999999998877543222222 2456676666432100001111222233333333332211 1222222
Q ss_pred HHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHH
Q 004960 250 HFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALN 329 (721)
Q Consensus 250 ~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~ 329 (721)
+.-+.++ ++..|....+.+..+....+..-......+.++..++-.+.+.+.+ .......+..+++.
T Consensus 722 ---v~~lkde--~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~--------d~vml~gfg~V~~~ 788 (1172)
T KOG0213|consen 722 ---VLDLKDE--PEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTE--------DSVMLLGFGTVVNA 788 (1172)
T ss_pred ---hhhhccc--cHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccc--------hhhhhhhHHHHHHH
Confidence 2222222 6778888888877777554332111112344555555555554311 12334567777777
Q ss_pred cC---ccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHH-HHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHH
Q 004960 330 LA---KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWM-KEKLESVLHIVLGALRDPEQFVRGAASFALGQF 405 (721)
Q Consensus 330 ~~---~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~-~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l 405 (721)
++ +.+++++...+...+++.....|..|...++.++.-++.-- ...+..+=-.+.+.+..+.|.|.-..+.++..+
T Consensus 789 lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI 868 (1172)
T KOG0213|consen 789 LGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAI 868 (1172)
T ss_pred HhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHH
Confidence 76 45778888888889999999999999999999886543211 112233334678889999999988888888877
Q ss_pred HhhhhH-HHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhcccc-chHHHHHHHHHhhcCCChhHHHHHHHH
Q 004960 406 AEYLQP-EIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILP-FLDPLMGKLLAALENSPRNLQETCMSA 483 (721)
Q Consensus 406 ~~~~~~-~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~-~~~~i~~~l~~~l~~~~~~v~~~~l~~ 483 (721)
....+- ...+=..+++|.|...|++....|+.++...++.++...++.+.+ -.-.|.=.|+..+...+.++|.++.+.
T Consensus 869 ~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nT 948 (1172)
T KOG0213|consen 869 VNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNT 948 (1172)
T ss_pred HHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 766532 122345788999999999999999999999999999988764431 233455567778888889999999999
Q ss_pred HHHHHHHhhhcchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCChhhH
Q 004960 484 IGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELR 563 (721)
Q Consensus 484 l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~ 563 (721)
+|.|+.+.|.+ .++..|.+-+. ..+...|--..-.++.++..+|+ -.+++.+++....+...|+
T Consensus 949 fG~IakaIGPq------dVLatLlnnLk---vqeRq~RvcTtvaIaIVaE~c~p-------FtVLPalmneYrtPe~nVQ 1012 (1172)
T KOG0213|consen 949 FGYIAKAIGPQ------DVLATLLNNLK---VQERQNRVCTTVAIAIVAETCGP-------FTVLPALMNEYRTPEANVQ 1012 (1172)
T ss_pred hhHHHHhcCHH------HHHHHHHhcch---HHHHHhchhhhhhhhhhhhhcCc-------hhhhHHHHhhccCchhHHH
Confidence 99999998853 33443333332 23333333333445666666654 2467788887888888999
Q ss_pred HHHHHHHHHHHHHcccCcccchhhhHHHHHhhc
Q 004960 564 EYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSC 596 (721)
Q Consensus 564 ~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~ 596 (721)
..++.+++.+.+..|+--..|+-.+.|.|-+++
T Consensus 1013 nGVLkalsf~FeyigemskdYiyav~PlleDAl 1045 (1172)
T KOG0213|consen 1013 NGVLKALSFMFEYIGEMSKDYIYAVTPLLEDAL 1045 (1172)
T ss_pred HhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhh
Confidence 999999999999999988999999999987655
No 25
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.84 E-value=1.5e-19 Score=174.35 Aligned_cols=395 Identities=13% Similarity=0.094 Sum_probs=299.0
Q ss_pred CcHHHHHHHHHHHHHHHcC----ccccHhHHH-HHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhc
Q 004960 313 LAPDRAAAEVIDTMALNLA----KHVFPPVFE-FASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGAL 387 (721)
Q Consensus 313 ~~~~~~a~~~l~~l~~~~~----~~~~~~i~~-~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l 387 (721)
++-|++|+.-+..+.+.+- -..+..+++ .+.++..+.+...|.+++..+++.+-+.+....+|+..+++.++.++
T Consensus 14 YekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~cf 93 (675)
T KOG0212|consen 14 YEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNCF 93 (675)
T ss_pred HHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHHHHHhc
Confidence 4456666666666655433 124456666 45567778888888899999999988877666669999999999999
Q ss_pred CCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhh-cc-ccchHHHHHHH
Q 004960 388 RDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGE-EI-LPFLDPLMGKL 465 (721)
Q Consensus 388 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~-~~-~~~~~~i~~~l 465 (721)
+|++..||..||..+-+++.....++..|++.++..+.+...|.+..||. +...+.++++.... .- .-.++.+++.|
T Consensus 94 ~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIVte~~~tFsL~~~ipLL 172 (675)
T KOG0212|consen 94 SDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIVTESASTFSLPEFIPLL 172 (675)
T ss_pred cCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhccccccccCHHHHHHHH
Confidence 99999999999999999999988888889999999999999999887875 56777777776532 22 34678999999
Q ss_pred HHhhcCCChhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhccCChH
Q 004960 466 LAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILP 545 (721)
Q Consensus 466 ~~~l~~~~~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 545 (721)
...+...++..|..++..+..+-...+-++..|++.+++.|.+.+.. +..++|..+=.+++.+...+..+.-.-..+
T Consensus 173 ~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD---~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~ 249 (675)
T KOG0212|consen 173 RERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSD---SSDEVRTLTDTLLSEFLAEIRSSPSSMDYD 249 (675)
T ss_pred HHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcC---CcHHHHHHHHHHHHHHHHHHhcCccccCcc
Confidence 99888889999999999999998888888999999999999998854 333455555566666665553322222567
Q ss_pred HHHHHHHhccCCCChhhHHHHHHHHHHHHHHcccCcccchhhhHHHHHhhccCCCCC-ccCCCCCccccccCCCCC-CCC
Q 004960 546 PFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGS-AVDIDGSDDENINGFGGV-SSD 623 (721)
Q Consensus 546 ~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~ 623 (721)
++++.++..++++++.++..++..+..+++..|.++.+|++.++..++.++...+.. +.+.+......+-...+. ...
T Consensus 250 ~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~ 329 (675)
T KOG0212|consen 250 DMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLK 329 (675)
T ss_pred cchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhc
Confidence 788888888999999999999999999999999999999999999999998765542 100000000000000000 000
Q ss_pred c----hhhhhccccceeeecchhhhHHHHHHHHHHHHHHccccccchHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHH
Q 004960 624 D----EAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTA 699 (721)
Q Consensus 624 ~----~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~ 699 (721)
. ...++...+. +.+...++|.+++.++..+-...|.++.-+..++.+.|++.++|.+++|...+...+..++..
T Consensus 330 ~~id~~~ii~vl~~~--l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s 407 (675)
T KOG0212|consen 330 EEIDYGSIIEVLTKY--LSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSS 407 (675)
T ss_pred cccchHHHHHHHHHH--hhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcC
Confidence 0 0001111121 455667899999999999999999999999999999999999999999999999999999874
Q ss_pred HHHhcccCCcchhHHHHHhhcC
Q 004960 700 AHAIFQSHNVSLCYHFFLLSCL 721 (721)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~ 721 (721)
- +..+|..|++|.|
T Consensus 408 ~--------~~~~~~~fl~sLL 421 (675)
T KOG0212|consen 408 S--------NSPNLRKFLLSLL 421 (675)
T ss_pred c--------ccccHHHHHHHHH
Confidence 2 2227899999864
No 26
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=99.84 E-value=3.8e-15 Score=152.91 Aligned_cols=521 Identities=14% Similarity=0.158 Sum_probs=282.0
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHhcCCCcHHHHHHHHhcC-CChhHHHHHHHHHHHhhhhhhcC-----CCHHHHHHH
Q 004960 6 ELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTA-KTPNVRQLAAVLLRKKITGHWAK-----LSPQLKQLV 79 (721)
Q Consensus 6 ~~ll~~~~s~d~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~-~~~~vr~~a~~~l~~~i~~~w~~-----~~~~~~~~i 79 (721)
...+...+|+|+..++.||+.|++++++++|...|..+..+. .+-+.|..|++++||.+.++|.. +.++....|
T Consensus 7 v~~~~~aqs~~p~s~k~AE~~Lrqwe~q~gF~~kL~~I~~~~~~~m~lR~~a~i~fkn~I~~~W~~~~~~~i~p~e~v~I 86 (947)
T COG5657 7 VKQLDLAQSPDPPSVKCAEERLRQWEKQHGFALKLLSINLSAFNSMSLRWAALIQFKNYIDKHWREENGNSILPDENVLI 86 (947)
T ss_pred HHHHHhhcCCCCchHhhHHHHHHhhhccccHHHHHHHHHhccccchhHHHHHHHHHHhhHHHHhhhhcccCCCCccchHH
Confidence 345677889999999999999999999999999999999874 78999999999999999999985 556666699
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhh------cc
Q 004960 80 KQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQ------TF 153 (721)
Q Consensus 80 ~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~------~~ 153 (721)
|..++..+.+ .+..+.-+.|.+++.||+.++|. .||+++|.+...++++|.......+.++..+++.... .+
T Consensus 87 R~~l~~lii~-s~n~l~iq~a~avs~IA~~DfPd-eWpTL~~DL~~~Ls~~D~~tn~~~L~~~h~Ifk~~r~l~Rsd~lf 164 (947)
T COG5657 87 RDELFSLIIS-SSNQLQIQNALAVSRIARLDFPD-EWPTLVPDLLSLLSEKDMVTNENSLRVLHHIFKRLRRLFRSDALF 164 (947)
T ss_pred HHHHHHHHHc-ccchHHHHHHHHHHHHHhccCcc-cchhHHHHHHhhhcccchHHHHHHHHHHHHHHHHHhhhhccHHHH
Confidence 9999999986 67777779999999999999995 9999999999999998888888999999999887542 22
Q ss_pred cccHHHHHHHHHHhhCCC-CCHHHHH-----------HHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHH
Q 004960 154 RPHFADMQALLLKCLQDE-TSNRVRI-----------AALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEED 221 (721)
Q Consensus 154 ~~~~~~l~~~l~~~l~~~-~~~~vr~-----------~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~ 221 (721)
....+.+.+++...+... ..+..+. .+++.+..+....-+. ....+.+.++..+......+...++.
T Consensus 165 ~ei~p~L~~~l~pfl~~~~~~~s~~~~~~~~llslfqv~L~~~r~~~~~~~qd-i~eFfEd~l~~~m~~F~klls~~~~~ 243 (947)
T COG5657 165 LEIAPVLLSILCPFLFSSAYFWSMSENLDESLLSLFQVCLKLIRRYYDLGFQD-IPEFFEDNLDKFMEHFCKLLSYSNPV 243 (947)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHhhcchhhHHHHHHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHHHHHHHhhcchh
Confidence 333344444443333210 1111111 1222222222221111 12345667777777666666544444
Q ss_pred HHHH-------------HHHHHHHHhcCcccchhhhHHHHHHHHHHhhcC---CCCChHHHHHHHHHHHHHHHHh-H---
Q 004960 222 VAVI-------------AFEIFDELIESPAPLLGDSVKSIVHFSLEVSSS---HNLEPNTRHQAIQIISWLAKYK-Y--- 281 (721)
Q Consensus 222 ~~~~-------------a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~r~~a~~~l~~l~~~~-~--- 281 (721)
.+.. .+..+.-+....|..+...+-.+++..+...++ +..-+.+...++.++....+.. +
T Consensus 244 lq~~~le~~~~~~l~~~i~e~f~ly~t~yp~~it~li~dfv~~vw~~lttit~~~~~d~Lv~k~l~~l~~v~k~~irk~~ 323 (947)
T COG5657 244 LQKDCLEDCVYFKLKGSICEIFNLYTTKYPEVITYLIYDFVEIVWNLLTTITRPYIRDYLVSKSLTVLINVIKYPIRKTA 323 (947)
T ss_pred hhhhhcccceeeeecccHHHHHHHHhhccHHHhhHHHHHHHHHHHHHHHhhcCccccchhhhhHHHHHHHhhccccHHHH
Confidence 3332 233333333334444554444444443333322 1111223333444444333311 1
Q ss_pred hhhhh--cCChHHHHHHHH-hhhccCCCCCC----------------CCCCcHHHHHHHHHHHHHHHcCccccHhHHHHH
Q 004960 282 NSLKK--HKLVIPILQVMC-PLLAESNEAGE----------------DDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFA 342 (721)
Q Consensus 282 ~~~~~--~~~~~~il~~l~-~~l~~~~~~~~----------------~~~~~~~~~a~~~l~~l~~~~~~~~~~~i~~~l 342 (721)
..+.. ...+..+++.++ +.+.-.++|.+ +-+..+|..+...+...-..+++-..+.+...+
T Consensus 324 e~l~n~~~~~~~~lvd~l~l~n~~lreed~E~~~ddp~eyire~s~~dye~~vr~~~~~~l~~~f~~~~~i~~~~~~~~i 403 (947)
T COG5657 324 EVLSNVSENLINNLVDLLILPNLILREEDLEEWEDDPLEYIREQSKTDYEVNVRPCIENELKDLFDVFGRIAVGHELTVI 403 (947)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccCcccccccccCHHHHHHhhccccchhhhhHHHHHHHHHHHHHHhhHhHHHHHHHH
Confidence 11111 012233333322 22221111111 112344555666666665555543445566666
Q ss_pred HhhhcCCChhhHhHHHHHHHHHhhc-cH----HHHHHhHHHHHHHHHhhcCC----CCHhHHHHH-HHHHHHHHhhhhHH
Q 004960 343 SVSCQNASPKYREAAVTAIGIISEG-CA----EWMKEKLESVLHIVLGALRD----PEQFVRGAA-SFALGQFAEYLQPE 412 (721)
Q Consensus 343 ~~~l~~~~~~~r~~al~~l~~i~~~-~~----~~~~~~l~~i~~~l~~~l~d----~~~~vr~~a-~~~l~~l~~~~~~~ 412 (721)
.+....+ +....+......++.. .+ ..+.+...-.-....+-+.+ .+.+++... ...+..-......+
T Consensus 404 e~~~t~P--~~~d~~~~~~a~~a~~g~g~~av~~~~~~v~~~~~~~~pd~~s~~~~~~~ri~~~~i~~i~~~r~~l~~~~ 481 (947)
T COG5657 404 ESEATTP--NILDEARQLFAAYASFGLGVEAVNRMVDFVKFLGSIIYPDLLSPNEIIHLRILRSRIAYILTFRNQLDSSE 481 (947)
T ss_pred HHHhcCc--hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCccccCcccCceeEEehhccchheechhhhhhhh
Confidence 6555555 3333333333333321 11 11112211111222222222 233433222 22211111100011
Q ss_pred --HHHhh-hhHHHHHHHhccCCC--hHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCC-ChhHHHHHHHHHHH
Q 004960 413 --IVSHY-ESVLPCILNALEDES--DEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENS-PRNLQETCMSAIGS 486 (721)
Q Consensus 413 --~~~~~-~~~l~~l~~~l~~~~--~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~-~~~v~~~~l~~l~~ 486 (721)
..+++ .+.+..+.....+.. -.++.+....+....-.. .......+.++-.+.+.+.+. +..-++..++++++
T Consensus 482 ~~~~~fl~~~~F~~yt~~~id~~~lLT~~~a~~t~~~~~n~~~-~~~~~~lenl~~lvl~~~as~~~~~e~~~ll~~i~r 560 (947)
T COG5657 482 LSESKFLASQFFVNYTTACIDAVVLLTTREAYSTIFDDWNFSV-CSKIGLLENLILLVLSLMASPSSLEEREFLLQLISR 560 (947)
T ss_pred hhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccc-ccccccHHHHHHHHHHhcCCcchhHHHHHHHHHHHH
Confidence 01111 112222222222211 123333333333222111 133345566666666666665 45668899999999
Q ss_pred HHHHhhhcchhhHHHHHHHHHHHHhcc-Cchh-hhhHHHHHHHHHHHH
Q 004960 487 VAAAAEQAFIPYAERVLELLKIFMVLT-NDED-LRSRARATELLGLVA 532 (721)
Q Consensus 487 l~~~~~~~~~~~~~~i~~~l~~~l~~~-~~~~-~~~~~~~~~~l~~l~ 532 (721)
++...++...|..+++++.+.++.... +++. ...-....+.++.++
T Consensus 561 ii~~~~~~i~pl~~~il~~L~~lv~~~~knps~p~~~h~~fe~I~al~ 608 (947)
T COG5657 561 IIIIDPELIAPLGSEILQLLDNLVEINAKNPSNPQFAHYTFEDIGALV 608 (947)
T ss_pred HHHhCHHhhhhhHHHHHHHHHHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 999999999999999999998887642 2221 222233445555554
No 27
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.82 E-value=1.8e-16 Score=170.09 Aligned_cols=493 Identities=15% Similarity=0.203 Sum_probs=344.3
Q ss_pred chHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhh--cccccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChh
Q 004960 118 DLLPFLFQFSQSEQEEHREVALILFSSLTETIGQ--TFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGA 195 (721)
Q Consensus 118 ~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~--~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~ 195 (721)
.+...+...+.+++++.|++++.-+-.++...+. ......+++...+..+|.| .+.-++..|.+.++-+.+....+.
T Consensus 818 ~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd-~dEf~QDvAsrGlglVYelgd~~~ 896 (1702)
T KOG0915|consen 818 IILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSD-NDEFSQDVASRGLGLVYELGDSSL 896 (1702)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcc-cHHHHHHHHhcCceEEEecCCchh
Confidence 3566777788899999999999988888887753 2344568888999999999 888899999999887777654332
Q ss_pred hHHHHHhhHHHHHHHHHHHhh-----cCCHHH-------------HHHHHHHHHHHhcCcccchhhhHHHHHHHHHHhhc
Q 004960 196 EVVKFREFIPSILNVSRQCLA-----SGEEDV-------------AVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSS 257 (721)
Q Consensus 196 ~~~~~~~~l~~ll~~l~~~l~-----~~~~~~-------------~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~ 257 (721)
. ..+...+++.+...=. +++.++ ....++-|..++...+. |+++-.++++..
T Consensus 897 k----~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~q------PdLVYKFM~LAn 966 (1702)
T KOG0915|consen 897 K----KSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQ------PDLVYKFMQLAN 966 (1702)
T ss_pred H----HHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCC------hHHHHHHHHHhh
Confidence 1 3455556654422100 011111 12344445555544322 556666666665
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcC---ccc
Q 004960 258 SHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA---KHV 334 (721)
Q Consensus 258 ~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~---~~~ 334 (721)
+.. ....|.-|.-=++.+++.+..... +|++.++|.++.+--+++ ..++.+.......+..... +.+
T Consensus 967 h~A-~wnSk~GaAfGf~~i~~~a~~kl~--p~l~kLIPrLyRY~yDP~-------~~Vq~aM~sIW~~Li~D~k~~vd~y 1036 (1702)
T KOG0915|consen 967 HNA-TWNSKKGAAFGFGAIAKQAGEKLE--PYLKKLIPRLYRYQYDPD-------KKVQDAMTSIWNALITDSKKVVDEY 1036 (1702)
T ss_pred hhc-hhhcccchhhchHHHHHHHHHhhh--hHHHHhhHHHhhhccCCc-------HHHHHHHHHHHHHhccChHHHHHHH
Confidence 542 344555555556677766655543 457777777666544443 5667777777777765433 567
Q ss_pred cHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccH-HHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhh---h
Q 004960 335 FPPVFEFASVSCQNASPKYREAAVTAIGIISEGCA-EWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYL---Q 410 (721)
Q Consensus 335 ~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~---~ 410 (721)
+..+++.+...+.+..|++|+++|.++..+..+-+ +.+...+++++..+++.++|-...||.+|-.+...++..+ .
T Consensus 1037 ~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~ 1116 (1702)
T KOG0915|consen 1037 LNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRIC 1116 (1702)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 78888888888999999999999999999999876 6777889999999999999999999988755544443322 1
Q ss_pred -----HHHHHhhhhHHHHHHH-hccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCChhHHH------
Q 004960 411 -----PEIVSHYESVLPCILN-ALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQE------ 478 (721)
Q Consensus 411 -----~~~~~~~~~~l~~l~~-~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~------ 478 (721)
....+.+..++|.++. ++-+..+.||..++..+..+++..+..+.||++.+++.|.+.++.-++.|-.
T Consensus 1117 d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~ 1196 (1702)
T KOG0915|consen 1117 DVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRL 1196 (1702)
T ss_pred ccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhh
Confidence 2234567888888873 4446678899999999999999999999999999999999998886554421
Q ss_pred -----HHHHHHHH-HHHHhh-----hcchhh-----HHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhccC
Q 004960 479 -----TCMSAIGS-VAAAAE-----QAFIPY-----AERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEP 542 (721)
Q Consensus 479 -----~~l~~l~~-l~~~~~-----~~~~~~-----~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 542 (721)
++++.... .+...+ +.+.+| +++++|.+.+.+... -....|..+-.++..++..+|. .+.|
T Consensus 1197 ~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~s--Vgl~Tkvg~A~fI~~L~~r~~~-emtP 1273 (1702)
T KOG0915|consen 1197 INIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGS--VGLGTKVGCASFISLLVQRLGS-EMTP 1273 (1702)
T ss_pred hhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc--CCCCcchhHHHHHHHHHHHhcc-ccCc
Confidence 22222211 111111 112222 555677777666542 1223466777888888888875 7899
Q ss_pred ChHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHccc-CcccchhhhHHHHHhhccCCCCCccCCCCCccccccCCCCCC
Q 004960 543 ILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLED-GFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVS 621 (721)
Q Consensus 543 ~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (721)
|...++..++..+++.++.++.....++|.+++.-.+ ++..++..++-.++.-. +
T Consensus 1274 ~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~-------------e----------- 1329 (1702)
T KOG0915|consen 1274 YSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKD-------------E----------- 1329 (1702)
T ss_pred chhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccC-------------C-----------
Confidence 9999999999999999999999999999999987776 67777777666665100 0
Q ss_pred CCchhhhhccccceeeecchhhhHHHHHHHHHHHHHHccccccchHHHHHHHHHhccc
Q 004960 622 SDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVRHAS 679 (721)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 679 (721)
..+..++..+..|+.+..+.+..|...++|.+.-.+.
T Consensus 1330 ---------------------s~~siscatis~Ian~s~e~Lkn~asaILPLiFLa~~ 1366 (1702)
T KOG0915|consen 1330 ---------------------SLKSISCATISNIANYSQEMLKNYASAILPLIFLAMH 1366 (1702)
T ss_pred ---------------------CccchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHh
Confidence 0135577777778999999999999999998776654
No 28
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=4.1e-17 Score=160.87 Aligned_cols=360 Identities=16% Similarity=0.176 Sum_probs=270.1
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHHhhhhhhh--cccccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhH
Q 004960 120 LPFLFQFSQSEQEEHREVALILFSSLTETIGQ--TFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEV 197 (721)
Q Consensus 120 l~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~--~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 197 (721)
.+.+.+.+.+++...+..+...+..+...... .-......++|.+..++....++.++..|.++|.+++....+....
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 66777778888888888888888887754321 1111224678999999975378999999999999998866443222
Q ss_pred HHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcccchhhhHH-HHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 004960 198 VKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVK-SIVHFSLEVSSSHNLEPNTRHQAIQIISWL 276 (721)
Q Consensus 198 ~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l 276 (721)
..-.+-+|.++. ++.+++.+++.+|.|.|+.++...+.+-.-.+. ..+..++..+.... .....+.+.++++++
T Consensus 148 vv~agavp~fi~----Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~-~~~~lRn~tW~LsNl 222 (514)
T KOG0166|consen 148 VVDAGAVPIFIQ----LLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSD-KLSMLRNATWTLSNL 222 (514)
T ss_pred cccCCchHHHHH----HhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhcccc-chHHHHHHHHHHHHH
Confidence 222456676666 678899999999999999999988665443332 24455555544432 346788899999999
Q ss_pred HHHhH-hhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcCcc---c-cHhHHHHHHhhhcCCCh
Q 004960 277 AKYKY-NSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKH---V-FPPVFEFASVSCQNASP 351 (721)
Q Consensus 277 ~~~~~-~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~---~-~~~i~~~l~~~l~~~~~ 351 (721)
|+.+. ..- ...+..+++.+..++...| ..+...|.++++.++..-.+. + -..+.+.+...+.+.+.
T Consensus 223 crgk~P~P~--~~~v~~iLp~L~~ll~~~D-------~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~ 293 (514)
T KOG0166|consen 223 CRGKNPSPP--FDVVAPILPALLRLLHSTD-------EEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSP 293 (514)
T ss_pred HcCCCCCCc--HHHHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCc
Confidence 98752 110 0236778888888887765 456777888999888654421 1 13467788888999999
Q ss_pred hhHhHHHHHHHHHhhccHHHHHHhH-HHHHHHHHhhcC-CCCHhHHHHHHHHHHHHHhhhhHHHHHhh-hhHHHHHHHhc
Q 004960 352 KYREAAVTAIGIISEGCAEWMKEKL-ESVLHIVLGALR-DPEQFVRGAASFALGQFAEYLQPEIVSHY-ESVLPCILNAL 428 (721)
Q Consensus 352 ~~r~~al~~l~~i~~~~~~~~~~~l-~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~l~~l~~~l 428 (721)
..+-.|+.++|+|+.+........+ ...+|.+..++. ++...+|+.|||++++++...+..++..+ .+++|.|+..+
T Consensus 294 ~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l 373 (514)
T KOG0166|consen 294 KVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLL 373 (514)
T ss_pred ccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHH
Confidence 9999999999999988765443332 467788888888 66777999999999999998777776655 58999999999
Q ss_pred cCCChHHHHHHHHHHHHHHHhhhhccccchH--HHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhh
Q 004960 429 EDESDEVKEKSYYALAAFCEDMGEEILPFLD--PLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQ 493 (721)
Q Consensus 429 ~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~--~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~ 493 (721)
+..+.++|..|+|++++++.........|+- .+++.+..+|...+..+...++.++..+....+.
T Consensus 374 ~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~ 440 (514)
T KOG0166|consen 374 QTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEA 440 (514)
T ss_pred hccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887655555553 7888999999888888888999999988776543
No 29
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=3.5e-15 Score=148.15 Aligned_cols=508 Identities=15% Similarity=0.157 Sum_probs=341.5
Q ss_pred CCChhHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHccccCCC-CCcchHHHHHH
Q 004960 47 AKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAG-EWPDLLPFLFQ 125 (721)
Q Consensus 47 ~~~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~-~~~~ll~~l~~ 125 (721)
+..+.+|.--.-.....+.++ ..+....+++..-+.|.+..+..+|+.....-+..+.+.+... .--.++..+.+
T Consensus 28 d~~~~v~~~ml~a~~~~~~~~----~~~~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~d~~~~~~~~~~~~ 103 (569)
T KOG1242|consen 28 DRRIDVRGNMLEAGEAAINQH----GDQNVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIVDPRPISIIEILLE 103 (569)
T ss_pred CcchhhHHhHHHHHHHHHHhh----hHHHHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhccccCcchhHHHHHHHH
Confidence 345666655554444444443 2334556667777778777788899988888888887654321 22345667777
Q ss_pred hccCCcHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHH
Q 004960 126 FSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIP 205 (721)
Q Consensus 126 ~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~ 205 (721)
.+..+....+.+...|+..+.-.... .....+.+.+.++++. +...-|..+...+..++...... ... -..
T Consensus 104 ~~~tps~~~q~~~~~~l~~~~~~~~~---~~~~~~l~~l~~ll~~-~~~~~~~~aa~~~ag~v~g~~i~-~~~-~~~--- 174 (569)
T KOG1242|consen 104 ELDTPSKSVQRAVSTCLPPLVVLSKG---LSGEYVLELLLELLTS-TKIAERAGAAYGLAGLVNGLGIE-SLK-EFG--- 174 (569)
T ss_pred hcCCCcHHHHHHHHHHhhhHHHHhhc---cCHHHHHHHHHHHhcc-ccHHHHhhhhHHHHHHHcCcHHh-hhh-hhh---
Confidence 77788888998888888877644432 2345667777788876 77777777777776665543110 000 112
Q ss_pred HHHHHHHHHhhcCCHHH-HHHHHHHHHHHhcCcccchhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhh
Q 004960 206 SILNVSRQCLASGEEDV-AVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSL 284 (721)
Q Consensus 206 ~ll~~l~~~l~~~~~~~-~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~ 284 (721)
++..+.+.+.+..... +..+.-++.......++.+.+++..+++.++..+.+. ...+|..+......+.+..+..-
T Consensus 175 -~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~--~~~Vr~Aa~~a~kai~~~~~~~a 251 (569)
T KOG1242|consen 175 -FLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDK--INKVREAAVEAAKAIMRCLSAYA 251 (569)
T ss_pred -HHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhcc--chhhhHHHHHHHHHHHHhcCcch
Confidence 3344444555543332 2233333444444444556666666666666555444 67899999888887776543321
Q ss_pred hhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcCc---cccHhHHHHHHhhhcCCChhhHhHHHHHH
Q 004960 285 KKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAK---HVFPPVFEFASVSCQNASPKYREAAVTAI 361 (721)
Q Consensus 285 ~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~---~~~~~i~~~l~~~l~~~~~~~r~~al~~l 361 (721)
++.+++.++.-+.+. -|....++.+.++.++.+.+. ..++.++|.+.+.+.+.....|.++..++
T Consensus 252 -----VK~llpsll~~l~~~-------kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l 319 (569)
T KOG1242|consen 252 -----VKLLLPSLLGSLLEA-------KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETL 319 (569)
T ss_pred -----hhHhhhhhHHHHHHH-------hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHH
Confidence 333444344333332 288899999999999988874 46789999999999999999999998888
Q ss_pred HHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHH--HHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHH
Q 004960 362 GIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQ--FAEYLQPEIVSHYESVLPCILNALEDESDEVKEKS 439 (721)
Q Consensus 362 ~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~--l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a 439 (721)
-.+...... +.+..++|.++.++.|+...+.. +...|+. +..... .+.+.-++|.+.+++.+.+...+..+
T Consensus 320 ~~~~svidN---~dI~~~ip~Lld~l~dp~~~~~e-~~~~L~~ttFV~~V~---~psLalmvpiL~R~l~eRst~~kr~t 392 (569)
T KOG1242|consen 320 LKFGSVIDN---PDIQKIIPTLLDALADPSCYTPE-CLDSLGATTFVAEVD---APSLALMVPILKRGLAERSTSIKRKT 392 (569)
T ss_pred HHHHHhhcc---HHHHHHHHHHHHHhcCcccchHH-HHHhhcceeeeeeec---chhHHHHHHHHHHHHhhccchhhhhH
Confidence 777765332 33678899999999999876663 3344432 111111 14677889999999999988899999
Q ss_pred HHHHHHHHHhh--hhccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHhccCchh
Q 004960 440 YYALAAFCEDM--GEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDED 517 (721)
Q Consensus 440 ~~al~~l~~~~--~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~ 517 (721)
+..+.+++... +..+.||++.+++.+...+.+..+++|..+..+++.+.+..|.... +...|.+...+.....
T Consensus 393 ~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f---~d~~p~l~e~~~~~k~-- 467 (569)
T KOG1242|consen 393 AIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF---DDLIPELSETLTSEKS-- 467 (569)
T ss_pred HHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc---cccccHHHHhhccchh--
Confidence 99999999988 5678899999999999999999999999999999999999886432 5566666665533211
Q ss_pred hhhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccC--CCChhhHHHHHHHHHHHHHHcccCcccchhhhHHHHHhh
Q 004960 518 LRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFG--LEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSS 595 (721)
Q Consensus 518 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~--~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~ 595 (721)
...+..+...++.+....|-+ +...+++.++.... ..++.++.....++.-+-...|..|.+|+-.+++.+++.
T Consensus 468 ~~~~~g~aq~l~evl~~~~v~----~~~~~~~~~~a~~~~~~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~ 543 (569)
T KOG1242|consen 468 LVDRSGAAQDLSEVLAGLGVE----KVEDILPEILANASSVLIDERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFLKG 543 (569)
T ss_pred hhhhHHHhhhHHHHHhcccch----HHHHHHHHHHHHHhhccchhhhccCeeehhhccchhhhHHhHHHHHHHHHHHHHH
Confidence 112333444445544444432 33444555444333 235668888888888788888999999999999999987
Q ss_pred ccC
Q 004960 596 CNL 598 (721)
Q Consensus 596 ~~~ 598 (721)
+..
T Consensus 544 ~ad 546 (569)
T KOG1242|consen 544 LAD 546 (569)
T ss_pred hhh
Confidence 763
No 30
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=2.9e-15 Score=161.10 Aligned_cols=500 Identities=15% Similarity=0.179 Sum_probs=323.4
Q ss_pred CCCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHHHHHHh--hcCCHHHHHHHHHHHHHHHcc-
Q 004960 33 DPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESIT--LEHSAPVRRASANVVSIIAKY- 109 (721)
Q Consensus 33 ~p~~~~~l~~il~~~~~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i~~~ll~~l~--~e~~~~vr~~~~~~l~~i~~~- 109 (721)
+|+.+..+.++...+..-+.|.-||..|+.+..+.- ++..++++..+-.... -||++.|++....++..+...
T Consensus 954 qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~----~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~ 1029 (1702)
T KOG0915|consen 954 QPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAG----EKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDS 1029 (1702)
T ss_pred ChHHHHHHHHHhhhhchhhcccchhhchHHHHHHHH----HhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccCh
Confidence 577777777766556677778888888888777652 3334444443333322 479999999999999988742
Q ss_pred -ccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhh-hcccccHHHHHHHHHHhhCCCCCHHHHHHH---HHHH
Q 004960 110 -AVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIG-QTFRPHFADMQALLLKCLQDETSNRVRIAA---LKAI 184 (721)
Q Consensus 110 -~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~-~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a---~~~l 184 (721)
.....++++++..|...+.+..|.+|++++.++..+..+.+ +.+.+.++++...+++.+.| -...||.+| +.++
T Consensus 1030 k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDD-IKEsVR~aa~~~~~~l 1108 (1702)
T KOG0915|consen 1030 KKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDD-IKESVREAADKAARAL 1108 (1702)
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 11223678899999999999999999999999999998764 34566778888888888877 788899886 4455
Q ss_pred HHhhhhcCChhh----HHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHhhcCCC
Q 004960 185 GSFLEFTNDGAE----VVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHN 260 (721)
Q Consensus 185 ~~l~~~~~~~~~----~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~ 260 (721)
++++-...+... ......++|.+++ +.+.+.-+++|..++..+..+++..+..+.++++.+++.++...+.-
T Consensus 1109 sKl~vr~~d~~~~~~~~~~l~~iLPfLl~---~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~l- 1184 (1702)
T KOG0915|consen 1109 SKLCVRICDVTNGAKGKEALDIILPFLLD---EGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSEL- 1184 (1702)
T ss_pred HHHHhhhcccCCcccHHHHHHHHHHHHhc---cCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHcccc-
Confidence 555433222211 2223444554443 23335678999999999999999999999999999999998876443
Q ss_pred CChHHHH-HHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcCccccHhHH
Q 004960 261 LEPNTRH-QAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVF 339 (721)
Q Consensus 261 ~~~~~r~-~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~i~ 339 (721)
++.+-. .++.. .+.... .++.+-.-... .++ ..+.+..+.+.....++..++
T Consensus 1185 -E~~vLnYls~r~-~~~e~e-------------alDt~R~s~ak---------ssp---mmeTi~~ci~~iD~~vLeeli 1237 (1702)
T KOG0915|consen 1185 -EPQVLNYLSLRL-INIETE-------------ALDTLRASAAK---------SSP---MMETINKCINYIDISVLEELI 1237 (1702)
T ss_pred -chHHHHHHHHhh-hhhHHH-------------HHHHHHHhhhc---------CCc---HHHHHHHHHHhhhHHHHHHHH
Confidence 333322 22222 111100 00000000000 000 012233334444455777888
Q ss_pred HHHHhhhcC-CChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhH-HHHHhh
Q 004960 340 EFASVSCQN-ASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQP-EIVSHY 417 (721)
Q Consensus 340 ~~l~~~l~~-~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~ 417 (721)
|.+.+.+.+ .....|-++...+..++..++..+.|+...++..++..++|.++.+|++...++|.++..-.+ ..++++
T Consensus 1238 p~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLi 1317 (1702)
T KOG0915|consen 1238 PRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLI 1317 (1702)
T ss_pred HHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 888887754 477889999999999999999999999999999999999999999999999999999987765 455566
Q ss_pred hhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhcchh
Q 004960 418 ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIP 497 (721)
Q Consensus 418 ~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~~~~~ 497 (721)
+.++..++.-..+ .+..+|..+.+|.....+.+..|...+++.++=.....+...++--=+.+..+... +..-.+
T Consensus 1318 e~~l~~~l~k~es----~~siscatis~Ian~s~e~Lkn~asaILPLiFLa~~ee~Ka~q~Lw~dvW~e~vsg-gagtvr 1392 (1702)
T KOG0915|consen 1318 ETLLADLLGKDES----LKSISCATISNIANYSQEMLKNYASAILPLIFLAMHEEEKANQELWNDVWAELVSG-GAGTVR 1392 (1702)
T ss_pred HHHHHHHhccCCC----ccchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCC-Ccchhh
Confidence 6665555432222 23566777777777778888899999999876554433222222221222222211 222333
Q ss_pred -hHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCChhhHHHHHHHHHHHHH
Q 004960 498 -YAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAG 575 (721)
Q Consensus 498 -~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~ 575 (721)
|+++++..+.... .++..+.+|..+...+-.++.......-.|++..+...+...++...++=++..+.++.....
T Consensus 1393 l~~~eiLn~iceni--~nn~~w~lr~q~Akai~~~a~~~sss~~~p~ilkl~~~ll~~L~GRiwdGKe~iLKAl~~~~~ 1469 (1702)
T KOG0915|consen 1393 LYLLEILNLICENI--TNNESWKLRKQAAKAIRVIAEGLSSSAPIPVILKLALSLLDTLNGRIWDGKEEILKALASAFE 1469 (1702)
T ss_pred hhHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHHcccccccCChHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHH
Confidence 6666554433222 234557788888777777775554433446667777777766665444434444444443333
No 31
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=2.4e-15 Score=145.75 Aligned_cols=396 Identities=15% Similarity=0.170 Sum_probs=285.0
Q ss_pred HHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcccchhh
Q 004960 164 LLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGD 243 (721)
Q Consensus 164 l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~ 243 (721)
+.++++| .--+-|++|..-+.+++...-...+....+.++..+.. +...+.+...++.++-.+...+-..+.--.+
T Consensus 5 i~r~ltd-KlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~---d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~ 80 (675)
T KOG0212|consen 5 IARGLTD-KLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAG---DYAYSPHANMRKGGLIGLAAVAIALGIKDAG 80 (675)
T ss_pred hhhhhhh-HHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHH---HhccCcccccccchHHHHHHHHHHhccccHH
Confidence 4567777 77788888888887776654333333334444443333 3444444444444444443332222222223
Q ss_pred hHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHH
Q 004960 244 SVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVI 323 (721)
Q Consensus 244 ~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l 323 (721)
++..+++..+.++.+. +..+|+.|++.+.++++.....+. .+.+.++.++..+..+.+ .+++ .+.+.+
T Consensus 81 Y~~~iv~Pv~~cf~D~--d~~vRyyACEsLYNiaKv~k~~v~--~~Fn~iFdvL~klsaDsd-------~~V~-~~aeLL 148 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQ--DSQVRYYACESLYNIAKVAKGEVL--VYFNEIFDVLCKLSADSD-------QNVR-GGAELL 148 (675)
T ss_pred HHHHhhHHHHHhccCc--cceeeeHhHHHHHHHHHHhccCcc--cchHHHHHHHHHHhcCCc-------cccc-cHHHHH
Confidence 5555565555566555 678999999999999986554432 457788888888777665 2333 345677
Q ss_pred HHHHHHcC-c----cccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHH
Q 004960 324 DTMALNLA-K----HVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAA 398 (721)
Q Consensus 324 ~~l~~~~~-~----~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a 398 (721)
+.+.+.+. + --++.++|.+.+.+...++..|..-+.++..+-...+-.+..|++.+++.++.+|.|+++.||..+
T Consensus 149 dRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~ 228 (675)
T KOG0212|consen 149 DRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLT 228 (675)
T ss_pred HHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHH
Confidence 77776654 1 135788999999888889999999999999988877788899999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHH-hhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCCh-hH
Q 004960 399 SFALGQFAEYLQPEIVS-HYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPR-NL 476 (721)
Q Consensus 399 ~~~l~~l~~~~~~~~~~-~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~-~v 476 (721)
-.+++.+.......-.. .++++++.++..++++++.++..|+..+..++.-.|..+.+|+..++..+++++.+.+. +.
T Consensus 229 ~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i 308 (675)
T KOG0212|consen 229 DTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSI 308 (675)
T ss_pred HHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccH
Confidence 99898887655432122 45789999999999999999999999999999999999999999999999999998865 45
Q ss_pred HHHHHHHHHHHHHHhhhcch---hhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHh
Q 004960 477 QETCMSAIGSVAAAAEQAFI---PYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAIS 553 (721)
Q Consensus 477 ~~~~l~~l~~l~~~~~~~~~---~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~ 553 (721)
++.+...-+.+....+.... --+..++..+.+.+.. +....|..+++++..+-...+. .+..|..++++.++.
T Consensus 309 ~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~---~~~~tri~~L~Wi~~l~~~~p~-ql~~h~~~if~tLL~ 384 (675)
T KOG0212|consen 309 KEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSD---DREETRIAVLNWIILLYHKAPG-QLLVHNDSIFLTLLK 384 (675)
T ss_pred HHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhc---chHHHHHHHHHHHHHHHhhCcc-hhhhhccHHHHHHHH
Confidence 55554443333333332211 2255677777777743 3345677899999999877754 667788999999999
Q ss_pred ccCCCChhhHHHHHHHHHHHHHHccc
Q 004960 554 GFGLEFSELREYTHGFFSNIAGVLED 579 (721)
Q Consensus 554 ~l~~~~~~~~~~~~~~l~~l~~~~~~ 579 (721)
.+.+++.++...++..++.+|..-..
T Consensus 385 tLsd~sd~vvl~~L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 385 TLSDRSDEVVLLALSLLASICSSSNS 410 (675)
T ss_pred hhcCchhHHHHHHHHHHHHHhcCccc
Confidence 99999999988888989888875544
No 32
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.75 E-value=2.2e-14 Score=154.67 Aligned_cols=506 Identities=17% Similarity=0.194 Sum_probs=337.3
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHh--c-CC-CcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhcCCCHHHHHHH
Q 004960 4 SLELLLIQFLMPDNDARRQAEDQIKRLA--K-DP-QVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLV 79 (721)
Q Consensus 4 ~l~~ll~~~~s~d~~~r~~A~~~L~~~~--~-~p-~~~~~l~~il~~~~~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i 79 (721)
++.+++.... .+...+.++-+.+-.+. . +. .+....+..+. +++...|+.+-.++...... +++....+
T Consensus 8 el~~~~~~~~-~~~~~~~~~l~kli~~~~~G~~~~~~~~~vi~l~~-s~~~~~Krl~yl~l~~~~~~-----~~~~~~l~ 80 (526)
T PF01602_consen 8 ELAKILNSFK-IDISKKKEALKKLIYLMMLGYDISFLFMEVIKLIS-SKDLELKRLGYLYLSLYLHE-----DPELLILI 80 (526)
T ss_dssp HHHHHHHCSS-THHHHHHHHHHHHHHHHHTT---GSTHHHHHCTCS-SSSHHHHHHHHHHHHHHTTT-----SHHHHHHH
T ss_pred HHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhc-----chhHHHHH
Confidence 4444444444 47777888877775433 2 22 23444554444 67899999999888776543 45566667
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccccHHH
Q 004960 80 KQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFAD 159 (721)
Q Consensus 80 ~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~ 159 (721)
.+.+..-+.+ +++.+|..+..+++.+...+ ..+.+++.+.+.+.++++.+|..|+.++..+.+..++.+...
T Consensus 81 ~n~l~kdl~~-~n~~~~~lAL~~l~~i~~~~----~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~--- 152 (526)
T PF01602_consen 81 INSLQKDLNS-PNPYIRGLALRTLSNIRTPE----MAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE--- 152 (526)
T ss_dssp HHHHHHHHCS-SSHHHHHHHHHHHHHH-SHH----HHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG---
T ss_pred HHHHHHhhcC-CCHHHHHHHHhhhhhhcccc----hhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH---
Confidence 7788888775 89999999999999888543 467899999999999999999999999999998877644322
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCccc
Q 004960 160 MQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAP 239 (721)
Q Consensus 160 l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~ 239 (721)
+++.+.+++.| +++.|+.+|+.++..+ ... +. .+..+++.++..+.+.+...++-.+..+++++..+....+.
T Consensus 153 ~~~~l~~lL~d-~~~~V~~~a~~~l~~i-~~~-~~----~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~ 225 (526)
T PF01602_consen 153 LIPKLKQLLSD-KDPSVVSAALSLLSEI-KCN-DD----SYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPE 225 (526)
T ss_dssp HHHHHHHHTTH-SSHHHHHHHHHHHHHH-HCT-HH----HHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHH
T ss_pred HHHHHhhhccC-CcchhHHHHHHHHHHH-ccC-cc----hhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChh
Confidence 68888888988 8999999999999888 211 11 12257777777777677778888888999998888766554
Q ss_pred chhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHH
Q 004960 240 LLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAA 319 (721)
Q Consensus 240 ~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a 319 (721)
.... ..+++.+...+++. ++.+...++.++..+....+ ....+++.+...+...+ .+.+..+
T Consensus 226 ~~~~--~~~i~~l~~~l~s~--~~~V~~e~~~~i~~l~~~~~-------~~~~~~~~L~~lL~s~~-------~nvr~~~ 287 (526)
T PF01602_consen 226 DADK--NRIIEPLLNLLQSS--SPSVVYEAIRLIIKLSPSPE-------LLQKAINPLIKLLSSSD-------PNVRYIA 287 (526)
T ss_dssp HHHH--HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHSSSHH-------HHHHHHHHHHHHHTSSS-------HHHHHHH
T ss_pred hhhH--HHHHHHHHHHhhcc--ccHHHHHHHHHHHHhhcchH-------HHHhhHHHHHHHhhccc-------chhehhH
Confidence 4411 22333333333322 45666666666554442211 24566777777777443 5678888
Q ss_pred HHHHHHHHHHcCccccHhHHHHHHhhhc-CCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCC-CCHhHHHH
Q 004960 320 AEVIDTMALNLAKHVFPPVFEFASVSCQ-NASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRD-PEQFVRGA 397 (721)
Q Consensus 320 ~~~l~~l~~~~~~~~~~~i~~~l~~~l~-~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d-~~~~vr~~ 397 (721)
...+..++...++.+... ......+. +++...|..++..+..++.. .....+++.+.+.+.+ .++.+|..
T Consensus 288 L~~L~~l~~~~~~~v~~~--~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~------~n~~~Il~eL~~~l~~~~d~~~~~~ 359 (526)
T PF01602_consen 288 LDSLSQLAQSNPPAVFNQ--SLILFFLLYDDDPSIRKKALDLLYKLANE------SNVKEILDELLKYLSELSDPDFRRE 359 (526)
T ss_dssp HHHHHHHCCHCHHHHGTH--HHHHHHHHCSSSHHHHHHHHHHHHHH--H------HHHHHHHHHHHHHHHHC--HHHHHH
T ss_pred HHHHHHhhcccchhhhhh--hhhhheecCCCChhHHHHHHHHHhhcccc------cchhhHHHHHHHHHHhccchhhhhh
Confidence 888888876663323311 11122334 77888999999999998863 3455677777777744 47789999
Q ss_pred HHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcC-CChhH
Q 004960 398 ASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALEN-SPRNL 476 (721)
Q Consensus 398 a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~-~~~~v 476 (721)
++..++.++...++ ..+..++.+++.+......+...+...+.+++...+.. -..++..+.+.+.+ .++.+
T Consensus 360 ~i~~I~~la~~~~~----~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~----~~~~l~~L~~~l~~~~~~~~ 431 (526)
T PF01602_consen 360 LIKAIGDLAEKFPP----DAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPEL----REKILKKLIELLEDISSPEA 431 (526)
T ss_dssp HHHHHHHHHHHHGS----SHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTT----HHHHHHHHHHHHTSSSSHHH
T ss_pred HHHHHHHHHhccCc----hHHHHHHHHHHhhhhccccccchHHHHHHHHhhcChhh----hHHHHHHHHHHHHHhhHHHH
Confidence 99999999988753 34566677777777776777888888888888765432 23456666666665 46778
Q ss_pred HHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccC
Q 004960 477 QETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFG 556 (721)
Q Consensus 477 ~~~~l~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~ 556 (721)
+..+++++|......++ .. ....++..+.+.... +...+|...+.++..+....+.+. ..+.+.+.+....+
T Consensus 432 ~~~~~wilGEy~~~~~~-~~-~~~~~~~~l~~~~~~---~~~~vk~~ilt~~~Kl~~~~~~~~---~~~~i~~~~~~~~~ 503 (526)
T PF01602_consen 432 LAAAIWILGEYGELIEN-TE-SAPDILRSLIENFIE---ESPEVKLQILTALAKLFKRNPENE---VQNEILQFLLSLAT 503 (526)
T ss_dssp HHHHHHHHHHHCHHHTT-TT-HHHHHHHHHHHHHTT---SHHHHHHHHHHHHHHHHHHSCSTT---HHHHHHHHHHCHHH
T ss_pred HHHHHhhhcccCCcccc-cc-cHHHHHHHHHHhhcc---ccHHHHHHHHHHHHHHHhhCCchh---hHHHHHHHHHHHhc
Confidence 88888888887776655 11 334444444443322 234566677777777764433211 12467777766666
Q ss_pred --CCChhhHHHHHHHHHHH
Q 004960 557 --LEFSELREYTHGFFSNI 573 (721)
Q Consensus 557 --~~~~~~~~~~~~~l~~l 573 (721)
+.++++|+.+...+.-+
T Consensus 504 ~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 504 EDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp HS-SSHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHH
Confidence 67999999998877644
No 33
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.74 E-value=1.1e-13 Score=149.26 Aligned_cols=508 Identities=15% Similarity=0.158 Sum_probs=327.6
Q ss_pred HHHHHHHHHHHhhcC--CH-HHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcc
Q 004960 77 QLVKQSLIESITLEH--SA-PVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTF 153 (721)
Q Consensus 77 ~~i~~~ll~~l~~e~--~~-~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~ 153 (721)
..+.+.+-+.+.+ . +. ..++.+..++....... ....+++.+.+++.+++...+..+...+..+....++
T Consensus 3 ~~~~~el~~~~~~-~~~~~~~~~~~l~kli~~~~~G~----~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~-- 75 (526)
T PF01602_consen 3 KRISQELAKILNS-FKIDISKKKEALKKLIYLMMLGY----DISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPE-- 75 (526)
T ss_dssp HHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHHHTT-------GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHH--
T ss_pred chHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHcCC----CCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchh--
Confidence 3444455555553 3 33 34445555555444322 3446889999999999999999999999888876654
Q ss_pred cccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 004960 154 RPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDEL 233 (721)
Q Consensus 154 ~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l 233 (721)
...-+++.+.+-+++ +++.+|..|+++++++.. .++.+.++..+.+.+.++++.+|+.|+-++..+
T Consensus 76 --~~~l~~n~l~kdl~~-~n~~~~~lAL~~l~~i~~-----------~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i 141 (526)
T PF01602_consen 76 --LLILIINSLQKDLNS-PNPYIRGLALRTLSNIRT-----------PEMAEPLIPDVIKLLSDPSPYVRKKAALALLKI 141 (526)
T ss_dssp --HHHHHHHHHHHHHCS-SSHHHHHHHHHHHHHH-S-----------HHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhhcC-CCHHHHHHHHhhhhhhcc-----------cchhhHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 234466777788888 999999999999998763 224444555555578889999999999999999
Q ss_pred hcCcccchhh-hHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCC
Q 004960 234 IESPAPLLGD-SVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDD 312 (721)
Q Consensus 234 ~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~ 312 (721)
....|..+.. .++.+.. .+.++ +..++..|+.++..+ +..+.... .+++.++..+...+...+ .
T Consensus 142 ~~~~p~~~~~~~~~~l~~----lL~d~--~~~V~~~a~~~l~~i-~~~~~~~~--~~~~~~~~~L~~~l~~~~------~ 206 (526)
T PF01602_consen 142 YRKDPDLVEDELIPKLKQ----LLSDK--DPSVVSAALSLLSEI-KCNDDSYK--SLIPKLIRILCQLLSDPD------P 206 (526)
T ss_dssp HHHCHCCHHGGHHHHHHH----HTTHS--SHHHHHHHHHHHHHH-HCTHHHHT--THHHHHHHHHHHHHTCCS------H
T ss_pred hccCHHHHHHHHHHHHhh----hccCC--cchhHHHHHHHHHHH-ccCcchhh--hhHHHHHHHhhhcccccc------h
Confidence 9988877766 3444443 44334 688999999888888 33333221 335555555555543322 1
Q ss_pred CcHHHHHHHHHHHHHHHcCc--ccc--HhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcC
Q 004960 313 LAPDRAAAEVIDTMALNLAK--HVF--PPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALR 388 (721)
Q Consensus 313 ~~~~~~a~~~l~~l~~~~~~--~~~--~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~ 388 (721)
| ... .++..+....+. ... ..+++.+...+.+.++.....++.++..+..... .+..+++.+...+.
T Consensus 207 ~-~q~---~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-----~~~~~~~~L~~lL~ 277 (526)
T PF01602_consen 207 W-LQI---KILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-----LLQKAINPLIKLLS 277 (526)
T ss_dssp H-HHH---HHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-----HHHHHHHHHHHHHT
T ss_pred H-HHH---HHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH-----HHHhhHHHHHHHhh
Confidence 2 122 223333322221 112 3467777777777778888888888887765432 45678888999999
Q ss_pred CCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHh
Q 004960 389 DPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAA 468 (721)
Q Consensus 389 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~ 468 (721)
++++.+|..++.++..++...++.+. ..-..+.....+++..+|..++..+..++.... ...+++.|.+.
T Consensus 278 s~~~nvr~~~L~~L~~l~~~~~~~v~----~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n------~~~Il~eL~~~ 347 (526)
T PF01602_consen 278 SSDPNVRYIALDSLSQLAQSNPPAVF----NQSLILFFLLYDDDPSIRKKALDLLYKLANESN------VKEILDELLKY 347 (526)
T ss_dssp SSSHHHHHHHHHHHHHHCCHCHHHHG----THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHH------HHHHHHHHHHH
T ss_pred cccchhehhHHHHHHHhhcccchhhh----hhhhhhheecCCCChhHHHHHHHHHhhcccccc------hhhHHHHHHHH
Confidence 99999999999999999888643332 111122222347778899999999999886542 34577777777
Q ss_pred h-cCCChhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhccCChHHH
Q 004960 469 L-ENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPF 547 (721)
Q Consensus 469 l-~~~~~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i 547 (721)
+ ...+..++..++.+++.++...+.....|++.++..+ ...+ + .+...++..+..+.... + ..-..+
T Consensus 348 l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll----~~~~-~--~~~~~~~~~i~~ll~~~-~----~~~~~~ 415 (526)
T PF01602_consen 348 LSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLL----EISG-D--YVSNEIINVIRDLLSNN-P----ELREKI 415 (526)
T ss_dssp HHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHH----HCTG-G--GCHCHHHHHHHHHHHHS-T----TTHHHH
T ss_pred HHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhh----hhcc-c--cccchHHHHHHHHhhcC-h----hhhHHH
Confidence 7 4457889999999999999998766655555555544 3321 1 22334555555554332 2 112345
Q ss_pred HHHHHhccCC-CChhhHHHHHHHHHHHHHHcccCcccchhhhHHHHHhhccCCCCCccCCCCCccccccCCCCCCCCchh
Q 004960 548 VEAAISGFGL-EFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEA 626 (721)
Q Consensus 548 ~~~l~~~l~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (721)
+..+...+.+ .+++++..++.++|..+...+. .. ..+.++..+.+...
T Consensus 416 l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~-~~-~~~~~~~~l~~~~~----------------------------- 464 (526)
T PF01602_consen 416 LKKLIELLEDISSPEALAAAIWILGEYGELIEN-TE-SAPDILRSLIENFI----------------------------- 464 (526)
T ss_dssp HHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTT-TT-HHHHHHHHHHHHHT-----------------------------
T ss_pred HHHHHHHHHHhhHHHHHHHHHhhhcccCCcccc-cc-cHHHHHHHHHHhhc-----------------------------
Confidence 5555555553 4777888888888887666555 11 44555555543221
Q ss_pred hhhccccceeeecchhhhHHHHHHHHHHHHHHccccccchHHHHHHHHHhccc--CCChhHHHHHHHHHHHH
Q 004960 627 HCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVRHAS--YFHEDVRYQAVFALKNI 696 (721)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~vr~~a~~~l~~l 696 (721)
....++|...+.++..+....++.- ..+.+.+.+.+... +.+.+||+.|...+.-+
T Consensus 465 ------------~~~~~vk~~ilt~~~Kl~~~~~~~~--~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 465 ------------EESPEVKLQILTALAKLFKRNPENE--VQNEILQFLLSLATEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp ------------TSHHHHHHHHHHHHHHHHHHSCSTT--HHHHHHHHHHCHHHHS-SSHHHHHHHHHHHHHH
T ss_pred ------------cccHHHHHHHHHHHHHHHhhCCchh--hHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 1123578899999988887766321 13477788888877 78999999998876544
No 34
>PTZ00429 beta-adaptin; Provisional
Probab=99.74 E-value=1.5e-12 Score=139.05 Aligned_cols=466 Identities=12% Similarity=0.101 Sum_probs=268.5
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHhc-CCCcHHHHHHHHhc---CCChhHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHH
Q 004960 7 LLLIQFLMPDNDARRQAEDQIKRLAK-DPQVVPALVQHLRT---AKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQS 82 (721)
Q Consensus 7 ~ll~~~~s~d~~~r~~A~~~L~~~~~-~p~~~~~l~~il~~---~~~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i~~~ 82 (721)
+++..+.++|-+.|+-..-++..+.+ +|+.....++.+.+ +++|.+|-.|.-.+.+. -.++..+.+...
T Consensus 72 dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~I-------r~~~i~e~l~~~ 144 (746)
T PTZ00429 72 DVVKLAPSTDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCI-------RVSSVLEYTLEP 144 (746)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcC-------CcHHHHHHHHHH
Confidence 44444555555666666666655544 45432222233322 24566666665444432 124445555555
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccccHHHHHH
Q 004960 83 LIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQA 162 (721)
Q Consensus 83 ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~l~~ 162 (721)
+.+++. ++++.||+.++-++..+.+.....-.-.++++.+.+++.+.++.+...|+.++..+.+..+..+ ......+.
T Consensus 145 lkk~L~-D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l-~l~~~~~~ 222 (746)
T PTZ00429 145 LRRAVA-DPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI-ESSNEWVN 222 (746)
T ss_pred HHHHhc-CCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh-HHHHHHHH
Confidence 555555 5777777777777777766432110112456667777777777777777777777765544322 12233334
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCc-ccch
Q 004960 163 LLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESP-APLL 241 (721)
Q Consensus 163 ~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~-~~~~ 241 (721)
.+.+.+.+ -++=.+...+.++.. +.+.. ..... .+++.+...++..++.+...|++++..+.... +...
T Consensus 223 ~Ll~~L~e-~~EW~Qi~IL~lL~~---y~P~~--~~e~~----~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~ 292 (746)
T PTZ00429 223 RLVYHLPE-CNEWGQLYILELLAA---QRPSD--KESAE----TLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELI 292 (746)
T ss_pred HHHHHhhc-CChHHHHHHHHHHHh---cCCCC--cHHHH----HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHH
Confidence 44444444 344445455555533 22211 11112 34444444677788899999999998887643 2333
Q ss_pred hhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHH
Q 004960 242 GDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAE 321 (721)
Q Consensus 242 ~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~ 321 (721)
...+..+-..++.+. ++ ++++++.++..+..++...|..+.+ -+...+-...+ ...++....+
T Consensus 293 ~~~~~rl~~pLv~L~-ss--~~eiqyvaLr~I~~i~~~~P~lf~~------~~~~Ff~~~~D--------p~yIK~~KLe 355 (746)
T PTZ00429 293 ERCTVRVNTALLTLS-RR--DAETQYIVCKNIHALLVIFPNLLRT------NLDSFYVRYSD--------PPFVKLEKLR 355 (746)
T ss_pred HHHHHHHHHHHHHhh-CC--CccHHHHHHHHHHHHHHHCHHHHHH------HHHhhhcccCC--------cHHHHHHHHH
Confidence 333333334444442 33 5679999998888888766554432 11222222221 1234555555
Q ss_pred HHHHHHHHcCccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHH
Q 004960 322 VIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFA 401 (721)
Q Consensus 322 ~l~~l~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~ 401 (721)
.+..++ .+..+..++..+.++..+.+...+..++.++|.++...+. ..+.++..++..+.+....+ ..++..
T Consensus 356 IL~~La---ne~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~----~a~~cV~~Ll~ll~~~~~~v-~e~i~v 427 (746)
T PTZ00429 356 LLLKLV---TPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVDS----VAPDCANLLLQIVDRRPELL-PQVVTA 427 (746)
T ss_pred HHHHHc---CcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChH----HHHHHHHHHHHHhcCCchhH-HHHHHH
Confidence 555444 4555677888888888888899999999999999976554 34566677777776544434 356677
Q ss_pred HHHHHhhhhHHHHHhhhhHHHHHHHhcc---CCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCChhHHH
Q 004960 402 LGQFAEYLQPEIVSHYESVLPCILNALE---DESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQE 478 (721)
Q Consensus 402 l~~l~~~~~~~~~~~~~~~l~~l~~~l~---~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~ 478 (721)
+..+....+.. .+++.++..+. -.++..+.+.+|.++.+++..+. .+.++..+.+.+.+.+..||-
T Consensus 428 ik~IlrkyP~~------~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~-----a~~~L~~~i~~f~~E~~~Vql 496 (746)
T PTZ00429 428 AKDIVRKYPEL------LMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN-----GKDIIQRFIDTIMEHEQRVQL 496 (746)
T ss_pred HHHHHHHCccH------HHHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh-----HHHHHHHHHhhhccCCHHHHH
Confidence 77776655432 14555554331 12467899999999999875532 345666666666667888999
Q ss_pred HHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHH
Q 004960 479 TCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVA 532 (721)
Q Consensus 479 ~~l~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~ 532 (721)
+++.+...+....++...+.+.. .+....+. +++.++|.+|......+.
T Consensus 497 qlLta~vKlfl~~p~~~~~~l~~---vL~~~t~~--~~d~DVRDRA~~Y~rLLs 545 (746)
T PTZ00429 497 AILSAAVKMFLRDPQGMEPQLNR---VLETVTTH--SDDPDVRDRAFAYWRLLS 545 (746)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHH---HHHHHHhc--CCChhHHHHHHHHHHHHc
Confidence 99999888877765443322222 22222222 344567777876666553
No 35
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=3.8e-14 Score=140.18 Aligned_cols=353 Identities=14% Similarity=0.153 Sum_probs=251.0
Q ss_pred CCChhHHHHHHHHHHHhhhhh-hcCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHccccCCC---CCcchHHH
Q 004960 47 AKTPNVRQLAAVLLRKKITGH-WAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAG---EWPDLLPF 122 (721)
Q Consensus 47 ~~~~~vr~~a~~~l~~~i~~~-w~~~~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~---~~~~ll~~ 122 (721)
+++++.+..|...+++.+... -+.+.+-.+..+...+.++|..+.++.++..+|.++..|++...... .-...+|.
T Consensus 77 S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~ 156 (514)
T KOG0166|consen 77 SDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPI 156 (514)
T ss_pred CCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHH
Confidence 346777888888888887542 13455556667778888999876789999999999999998543211 22557899
Q ss_pred HHHhccCCcHHHHHHHHHHHHHhhhhhhhcccccH--HHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHH
Q 004960 123 LFQFSQSEQEEHREVALILFSSLTETIGQTFRPHF--ADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKF 200 (721)
Q Consensus 123 l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 200 (721)
+.+++.+++..+++.|..+|++++.+.+.. ..++ ..+++.++..+..+........+.|+|.++++....+......
T Consensus 157 fi~Ll~s~~~~v~eQavWALgNIagds~~~-Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v 235 (514)
T KOG0166|consen 157 FIQLLSSPSADVREQAVWALGNIAGDSPDC-RDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVV 235 (514)
T ss_pred HHHHhcCCcHHHHHHHHHHHhccccCChHH-HHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHH
Confidence 999999999999999999999999765432 2222 3456777777776233356678999999999987443334444
Q ss_pred HhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcccchhhhHH-HHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 004960 201 REFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVK-SIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKY 279 (721)
Q Consensus 201 ~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~ 279 (721)
...+|.+.. .+.+.|+++...|+|.+..+.........-.+. .+++.+..++.+. +..++..|+..+++++..
T Consensus 236 ~~iLp~L~~----ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~--~~~v~~PaLRaiGNIvtG 309 (514)
T KOG0166|consen 236 APILPALLR----LLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHS--SPKVVTPALRAIGNIVTG 309 (514)
T ss_pred HHHHHHHHH----HHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCC--CcccccHHHhhccceeec
Confidence 555555544 778899999999999999999876654443332 2344444455554 344555566665555432
Q ss_pred hHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcCccccHhHHHHHHhhhc-CCChhhHhHHH
Q 004960 280 KYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQ-NASPKYREAAV 358 (721)
Q Consensus 280 ~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~i~~~l~~~l~-~~~~~~r~~al 358 (721)
...... .+ +-...++.+...+. ++....|..|+
T Consensus 310 ~d~QTq------~v----------------------------------------i~~~~L~~l~~ll~~s~~~~ikkEAc 343 (514)
T KOG0166|consen 310 SDEQTQ------VV----------------------------------------INSGALPVLSNLLSSSPKESIKKEAC 343 (514)
T ss_pred cHHHHH------HH----------------------------------------HhcChHHHHHHHhccCcchhHHHHHH
Confidence 111000 00 00123444444454 45556889999
Q ss_pred HHHHHHhhccHHHHHHhH-HHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhh--hhHHHHHHHhccCCChHH
Q 004960 359 TAIGIISEGCAEWMKEKL-ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY--ESVLPCILNALEDESDEV 435 (721)
Q Consensus 359 ~~l~~i~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~~l~~l~~~l~~~~~~v 435 (721)
+++++|..|..+.+...+ ..++|.++..+...+..+|+.|+|++++++....++...|+ .++++.+...|.-.+.++
T Consensus 344 W~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~i 423 (514)
T KOG0166|consen 344 WTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKI 423 (514)
T ss_pred HHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHH
Confidence 999999999887766654 47899999999998999999999999999987776656665 579999999998888888
Q ss_pred HHHHHHHHHHHHHhhhh
Q 004960 436 KEKSYYALAAFCEDMGE 452 (721)
Q Consensus 436 ~~~a~~al~~l~~~~~~ 452 (721)
...++.++.++......
T Consensus 424 i~v~Ld~l~nil~~~e~ 440 (514)
T KOG0166|consen 424 ILVALDGLENILKVGEA 440 (514)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88899999998877643
No 36
>PTZ00429 beta-adaptin; Provisional
Probab=99.67 E-value=2.9e-11 Score=129.24 Aligned_cols=498 Identities=12% Similarity=0.081 Sum_probs=313.5
Q ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhccc
Q 004960 75 LKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFR 154 (721)
Q Consensus 75 ~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~ 154 (721)
...+|++.| .+......+..+-.+++.+.... .-..+++.+..++.+++...|..+...+....+..++.
T Consensus 33 e~~ELr~~L----~s~~~~~kk~alKkvIa~mt~G~----DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pel-- 102 (746)
T PTZ00429 33 EGAELQNDL----NGTDSYRKKAAVKRIIANMTMGR----DVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEK-- 102 (746)
T ss_pred hHHHHHHHH----HCCCHHHHHHHHHHHHHHHHCCC----CchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHH--
Confidence 334555444 33223344566666777666532 45668999999999999999998888888876554431
Q ss_pred ccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 004960 155 PHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELI 234 (721)
Q Consensus 155 ~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~ 234 (721)
.--.++.+.+-+++ +|+.+|..|+++++.+-. ..+++.++..+.+++.+.++-+|+.|.-++.++.
T Consensus 103 --alLaINtl~KDl~d-~Np~IRaLALRtLs~Ir~-----------~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly 168 (746)
T PTZ00429 103 --ALLAVNTFLQDTTN-SSPVVRALAVRTMMCIRV-----------SSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLF 168 (746)
T ss_pred --HHHHHHHHHHHcCC-CCHHHHHHHHHHHHcCCc-----------HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 23446777788888 899999999999886543 3466667777777899999999999999999998
Q ss_pred cCcccchh--hhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCC
Q 004960 235 ESPAPLLG--DSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDD 312 (721)
Q Consensus 235 ~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~ 312 (721)
...+..+. .+++.+.. .+.+. +..+...|+..+..+.+..+..+. .....+..++..+.+.+ +
T Consensus 169 ~~~pelv~~~~~~~~L~~----LL~D~--dp~Vv~nAl~aL~eI~~~~~~~l~---l~~~~~~~Ll~~L~e~~------E 233 (746)
T PTZ00429 169 HDDMQLFYQQDFKKDLVE----LLNDN--NPVVASNAAAIVCEVNDYGSEKIE---SSNEWVNRLVYHLPECN------E 233 (746)
T ss_pred hhCcccccccchHHHHHH----HhcCC--CccHHHHHHHHHHHHHHhCchhhH---HHHHHHHHHHHHhhcCC------h
Confidence 87776542 23444433 33333 788999999999988865543221 12233333444443322 2
Q ss_pred CcHHHHHHHHHHHHHHHcC--ccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccH-HHHHHhHHHHHHHHHhhcCC
Q 004960 313 LAPDRAAAEVIDTMALNLA--KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCA-EWMKEKLESVLHIVLGALRD 389 (721)
Q Consensus 313 ~~~~~~a~~~l~~l~~~~~--~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~-~~~~~~l~~i~~~l~~~l~d 389 (721)
|..- ..+..+....+ +.-...++..+...+++.+..+..+|+.++-.+...+. +........+-+.++.+ ..
T Consensus 234 W~Qi----~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L-~s 308 (746)
T PTZ00429 234 WGQL----YILELLAAQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTL-SR 308 (746)
T ss_pred HHHH----HHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHh-hC
Confidence 4332 34444544433 22335677777888888898899999998888876543 33333333444545554 45
Q ss_pred CCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhh
Q 004960 390 PEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAAL 469 (721)
Q Consensus 390 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l 469 (721)
.++.+|..++..+..+....+.-+.+ -+..+.-...|+. .|+...+..|..++... .+..|+..|....
T Consensus 309 s~~eiqyvaLr~I~~i~~~~P~lf~~----~~~~Ff~~~~Dp~-yIK~~KLeIL~~Lane~------Nv~~IL~EL~eYa 377 (746)
T PTZ00429 309 RDAETQYIVCKNIHALLVIFPNLLRT----NLDSFYVRYSDPP-FVKLEKLRLLLKLVTPS------VAPEILKELAEYA 377 (746)
T ss_pred CCccHHHHHHHHHHHHHHHCHHHHHH----HHHhhhcccCCcH-HHHHHHHHHHHHHcCcc------cHHHHHHHHHHHh
Confidence 67899999999998888776543333 2444444456664 58888888888776332 3567888888888
Q ss_pred cCCChhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhccCChHHHHH
Q 004960 470 ENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVE 549 (721)
Q Consensus 470 ~~~~~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~ 549 (721)
.+.+..++..++.++|.++...+. ..+.++..|.+++... .+ ....++..+..+.+.. ++. .++.
T Consensus 378 ~d~D~ef~r~aIrAIg~lA~k~~~----~a~~cV~~Ll~ll~~~--~~--~v~e~i~vik~Ilrky-P~~------~il~ 442 (746)
T PTZ00429 378 SGVDMVFVVEVVRAIASLAIKVDS----VAPDCANLLLQIVDRR--PE--LLPQVVTAAKDIVRKY-PEL------LMLD 442 (746)
T ss_pred hcCCHHHHHHHHHHHHHHHHhChH----HHHHHHHHHHHHhcCC--ch--hHHHHHHHHHHHHHHC-ccH------HHHH
Confidence 888899999999999999977654 4555666666666432 22 2234555555554433 211 1344
Q ss_pred HHHhcc---CCCChhhHHHHHHHHHHHHHHcccCcccchhhhHHHHHhhccCCCCCccCCCCCccccccCCCCCCCCchh
Q 004960 550 AAISGF---GLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEA 626 (721)
Q Consensus 550 ~l~~~l---~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (721)
.+...+ .-.+++.|.+.+..+|..+..... .+.++..+++..
T Consensus 443 ~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~-----a~~~L~~~i~~f------------------------------ 487 (746)
T PTZ00429 443 TLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN-----GKDIIQRFIDTI------------------------------ 487 (746)
T ss_pred HHHHhhcccccccHHHHHHHHHHHHhhHhhHhh-----HHHHHHHHHhhh------------------------------
Confidence 444322 124778888888888887664332 233333322110
Q ss_pred hhhccccceeeecchhhhHHHHHHHHHHHHHHccccccchHHHHHHHHH-hccc-CCChhHHHHHHHH
Q 004960 627 HCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILV-RHAS-YFHEDVRYQAVFA 692 (721)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~vr~~a~~~ 692 (721)
.....++|...+-+...+....++...+ .+..++ .+.+ +.+++||..|.--
T Consensus 488 -----------~~E~~~VqlqlLta~vKlfl~~p~~~~~----~l~~vL~~~t~~~~d~DVRDRA~~Y 540 (746)
T PTZ00429 488 -----------MEHEQRVQLAILSAAVKMFLRDPQGMEP----QLNRVLETVTTHSDDPDVRDRAFAY 540 (746)
T ss_pred -----------ccCCHHHHHHHHHHHHHHHhcCcHHHHH----HHHHHHHHHHhcCCChhHHHHHHHH
Confidence 0111246777777777776666644333 333333 3433 4678999999753
No 37
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.66 E-value=1.6e-12 Score=127.51 Aligned_cols=540 Identities=12% Similarity=0.106 Sum_probs=321.1
Q ss_pred ChHHHHHHHHHHHHHhc---CCCcHHHHHHHHhcC-CChhHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHHHHHHhhcC
Q 004960 16 DNDARRQAEDQIKRLAK---DPQVVPALVQHLRTA-KTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEH 91 (721)
Q Consensus 16 d~~~r~~A~~~L~~~~~---~p~~~~~l~~il~~~-~~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i~~~ll~~l~~e~ 91 (721)
|.-+|+-......-+.+ -|+.. .+++.++.+ .+.+-|+.+.-...++..-.-... -.....+...+-.++. |.
T Consensus 294 deYVRnvt~ra~~vva~algv~~ll-pfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~-l~hl~~l~~ci~~~l~-D~ 370 (975)
T COG5181 294 DEYVRNVTGRAVGVVADALGVEELL-PFLEALCGSRKSWEARHTGIRIAQQICELLGRSR-LSHLGPLLKCISKLLK-DR 370 (975)
T ss_pred cHHHHHHHHHHHHHHHHhhCcHHHH-HHHHHHhcCccchhhhchhhHHHHHHHHHhCccH-HhhhhhHHHHHHHHhh-cc
Confidence 44445444433333332 33433 334444443 467777777644443321100000 0011222333333443 67
Q ss_pred CHHHHHHHHHHHHHHHccccCC--CCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhh-hcccccHHHHHHHHHHhh
Q 004960 92 SAPVRRASANVVSIIAKYAVPA--GEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIG-QTFRPHFADMQALLLKCL 168 (721)
Q Consensus 92 ~~~vr~~~~~~l~~i~~~~~~~--~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~-~~~~~~~~~l~~~l~~~l 168 (721)
+..+|-..|.+++.++....|- +++.+++..|++..++..-.....-+.+.|.++-... +....+..+.+.++...+
T Consensus 371 ~~~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref 450 (975)
T COG5181 371 SRFVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREF 450 (975)
T ss_pred ceeeeehhHhHHHHHHHhcCCcchHHHHHHHHHHHHHHHhcCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHh
Confidence 8889999999999999876664 3567777777777765544444556666666664443 233334578889999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHH---HHHHHHHHHhcCcccchhhhH
Q 004960 169 QDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAV---IAFEIFDELIESPAPLLGDSV 245 (721)
Q Consensus 169 ~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~---~a~~~l~~l~~~~~~~~~~~~ 245 (721)
++ ++.+.+...+.....+.....+ ....-..+..|.+++-...--...+....+ .+--.+.+....
T Consensus 451 ~s-pdeemkk~~l~v~~~C~~v~~~-tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~--------- 519 (975)
T COG5181 451 KS-PDEEMKKDLLVVERICDKVGTD-TPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGD--------- 519 (975)
T ss_pred CC-chhhcchhHHHHHHHHhccCCC-CHHHHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCC---------
Confidence 88 7777776655555444333222 112222445555555331110001111111 111122222211
Q ss_pred HHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHH
Q 004960 246 KSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDT 325 (721)
Q Consensus 246 ~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~ 325 (721)
+.+...++..++++ .+..|..+......+...-+..--.....+.++..++..+.+.+..+ . ....+++.
T Consensus 520 ~~v~~kil~~~~De--~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~---~-----~il~~f~t 589 (975)
T COG5181 520 PRVSRKILEYYSDE--PEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTV---G-----LILPCFST 589 (975)
T ss_pred hHHHHHHHhhccCC--cchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccc---c-----EEEecccc
Confidence 23344444444444 44566666665555544322210000112334444444554433110 0 01112222
Q ss_pred HHH---HcCccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccH---HHHHHhHHHHHHHHHhhcCCCCHhHHHHHH
Q 004960 326 MAL---NLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCA---EWMKEKLESVLHIVLGALRDPEQFVRGAAS 399 (721)
Q Consensus 326 l~~---~~~~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~---~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~ 399 (721)
+.. ..++..++.++..+...++++.+..|..|...++.++.-.+ +. ..+..+=..+.+.+....|.|--..+
T Consensus 590 v~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~--~~l~klg~iLyE~lge~ypEvLgsil 667 (975)
T COG5181 590 VLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGET--KELAKLGNILYENLGEDYPEVLGSIL 667 (975)
T ss_pred eeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchH--HHHHHHhHHHHHhcCcccHHHHHHHH
Confidence 221 23356788899999999999999999999988888876433 21 22344445678888888999988777
Q ss_pred HHHHHHHhhhh-HHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhcccc-chHHHHHHHHHhhcCCChhHH
Q 004960 400 FALGQFAEYLQ-PEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILP-FLDPLMGKLLAALENSPRNLQ 477 (721)
Q Consensus 400 ~~l~~l~~~~~-~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~-~~~~i~~~l~~~l~~~~~~v~ 477 (721)
.++..+..... ..+++-..+++|.|...|.+...+|..+....++.++...++.+.+ ..-.|.=.|...+.+.+.++|
T Consensus 668 ~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiR 747 (975)
T COG5181 668 KAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIR 747 (975)
T ss_pred HHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHH
Confidence 77776655432 2233456788899999999999999999999999999988764442 233455567788888899999
Q ss_pred HHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCC
Q 004960 478 ETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGL 557 (721)
Q Consensus 478 ~~~l~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~ 557 (721)
.+|.+.+|.+..+.|. +.++..|.+-+. .++...|--.--.++.++..+|+ -.+++.+++....
T Consensus 748 R~A~~tfG~Is~aiGP------qdvL~~LlnnLk---vqeRq~RvctsvaI~iVae~cgp-------fsVlP~lm~dY~T 811 (975)
T COG5181 748 RNATETFGCISRAIGP------QDVLDILLNNLK---VQERQQRVCTSVAISIVAEYCGP-------FSVLPTLMSDYET 811 (975)
T ss_pred HhhhhhhhhHHhhcCH------HHHHHHHHhcch---HHHHHhhhhhhhhhhhhHhhcCc-------hhhHHHHHhcccC
Confidence 9999999999999885 234444444332 23333333334456777777765 3567888888888
Q ss_pred CChhhHHHHHHHHHHHHHHcccCcccchhhhHHHHHhhcc
Q 004960 558 EFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCN 597 (721)
Q Consensus 558 ~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~ 597 (721)
+...++..++.++..+.+..|+.-..|+-.+.|.|-+++.
T Consensus 812 Pe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAlt 851 (975)
T COG5181 812 PEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALT 851 (975)
T ss_pred chhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhc
Confidence 8889999999999999999999999999999999987764
No 38
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.65 E-value=1.9e-15 Score=137.21 Aligned_cols=358 Identities=16% Similarity=0.166 Sum_probs=242.4
Q ss_pred hHHHHHHhccCCcHHHHHHHHHHHHHhhhhh-hhcccccH-HHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhh
Q 004960 119 LLPFLFQFSQSEQEEHREVALILFSSLTETI-GQTFRPHF-ADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAE 196 (721)
Q Consensus 119 ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~-~~~~~~~~-~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~ 196 (721)
-+|.+.+.+.|++.+....|..-++.+...- ...+.+.+ ..++|.+.+++.+......+..|.+++.++.+.......
T Consensus 72 elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTk 151 (526)
T COG5064 72 ELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTK 151 (526)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceE
Confidence 4588888888888888888888888776432 12222332 456788888885436677888999999999876543322
Q ss_pred HHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcccchhhhHH-HHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 004960 197 VVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVK-SIVHFSLEVSSSHNLEPNTRHQAIQIISW 275 (721)
Q Consensus 197 ~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~r~~a~~~l~~ 275 (721)
+.....-+|.+++ .+.+.+.+++.++.|.|+.++...+.+-.-.+. ..++.++.++.++..+...-+.+-+.|++
T Consensus 152 vVvd~~AVPlfiq----lL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSN 227 (526)
T COG5064 152 VVVDAGAVPLFIQ----LLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSN 227 (526)
T ss_pred EEEeCCchHHHHH----HHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHH
Confidence 2222456777777 566788999999999999999876543322221 23344444444444455677788899999
Q ss_pred HHHHhHh-hhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcCc---ccc-HhHHHHHHhhhcCCC
Q 004960 276 LAKYKYN-SLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAK---HVF-PPVFEFASVSCQNAS 350 (721)
Q Consensus 276 l~~~~~~-~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~---~~~-~~i~~~l~~~l~~~~ 350 (721)
+|+.+.. .-+ ..+...++.+.+++-..+ .++-..|.++++.++..-.+ .++ .-+.+.+.+.+.+++
T Consensus 228 lcRGknP~P~w--~~isqalpiL~KLiys~D-------~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~s 298 (526)
T COG5064 228 LCRGKNPPPDW--SNISQALPILAKLIYSRD-------PEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHES 298 (526)
T ss_pred hhCCCCCCCch--HHHHHHHHHHHHHHhhcC-------HHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCcc
Confidence 9975321 111 125667777777665543 34556677888887643221 111 123445777888888
Q ss_pred hhhHhHHHHHHHHHhhccHHHHHHhH-HHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhh-hhHHHHHHHhc
Q 004960 351 PKYREAAVTAIGIISEGCAEWMKEKL-ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY-ESVLPCILNAL 428 (721)
Q Consensus 351 ~~~r~~al~~l~~i~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~l~~l~~~l 428 (721)
....-.++..+|+|..+......-.+ -..++.+...|+++...+|+.|||+++++.......++..+ .+++|.|++.|
T Consensus 299 a~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~ll 378 (526)
T COG5064 299 AKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLL 378 (526)
T ss_pred ccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHH
Confidence 88999999999999987543221111 13456667778899889999999999999877666555554 58999999999
Q ss_pred cCCChHHHHHHHHHHHHHHHhh--hhccccch--HHHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q 004960 429 EDESDEVKEKSYYALAAFCEDM--GEEILPFL--DPLMGKLLAALENSPRNLQETCMSAIGSVAA 489 (721)
Q Consensus 429 ~~~~~~v~~~a~~al~~l~~~~--~~~~~~~~--~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~ 489 (721)
...+..++..||||+++..... .+++..|+ ...+..|...+.-.+-.+-+-++.++..+..
T Consensus 379 s~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk 443 (526)
T COG5064 379 SSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILK 443 (526)
T ss_pred HHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHh
Confidence 9998999999999999987765 23333443 2566677777766665566666666665554
No 39
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=2.6e-11 Score=119.18 Aligned_cols=426 Identities=16% Similarity=0.198 Sum_probs=260.2
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHHHHHHhh--cCCHHHHHH
Q 004960 21 RQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITL--EHSAPVRRA 98 (721)
Q Consensus 21 ~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i~~~ll~~l~~--e~~~~vr~~ 98 (721)
.+|-++|++|++.+..|..+-+++....+.....+|+..++++++..+..+++......|+.++..+.. +..+.++.+
T Consensus 2 ~~A~~~L~~FQ~S~~aW~i~~eiL~~~~~~~~~~FaaqTlr~Ki~~~F~~Lp~~~~~slrdsl~thl~~l~~~~~~i~tQ 81 (559)
T KOG2081|consen 2 EKANNWLGNFQKSNDAWQICEEILSQKCDVEALLFAAQTLRNKIQYDFSELPPLTHASLRDSLITHLKELHDHPDVIRTQ 81 (559)
T ss_pred chHhHHHHHhCCChHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhhHHhcCcchhHHHHHHHHHHHHHHHhCCchHHHH
Confidence 478899999999999999999999877788899999999999999999999998888888877766652 344489999
Q ss_pred HHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhh---------------hcccccHHHHHHH
Q 004960 99 SANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIG---------------QTFRPHFADMQAL 163 (721)
Q Consensus 99 ~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~---------------~~~~~~~~~l~~~ 163 (721)
++-+++.++-+-. .|.+-++.+++.+.+..+. ...-+..|.-+.+... +.+......++..
T Consensus 82 L~vavA~Lal~~~---~W~n~I~e~v~~~~~~~~~-~~~lLeiL~VlPEE~~~~~~~~~a~Rr~e~~~~l~~~~~~~L~~ 157 (559)
T KOG2081|consen 82 LAVAVAALALHMP---EWVNPIFELVRALSNKHPA-VPILLEILKVLPEETRDIRLTVGANRRHEFIDELAAQVSKVLVF 157 (559)
T ss_pred HHHHHHHHHHHhH---hhcchHHHHHHHhhcCCcc-HHHHHHHHHhCcHhhcchhhhhhhhhHHHHHHHHHHhHHHHHHH
Confidence 9999999987652 6988888888888777665 2244444544444321 1223334556666
Q ss_pred HHHhhCCC--CCHHHHHHHHHHHHHhhhhcCCh-hhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCc---
Q 004960 164 LLKCLQDE--TSNRVRIAALKAIGSFLEFTNDG-AEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESP--- 237 (721)
Q Consensus 164 l~~~l~~~--~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~--- 237 (721)
+..+++.. ++..+-..++++++++.....-+ ..+.....++..+ ...++ +......|..++..+....
T Consensus 158 l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~~~d~v~a~~pLi~l~----F~sl~--~~~lhe~At~cic~ll~~~~~~ 231 (559)
T KOG2081|consen 158 LSDLLERSDLKSSDDLEQVLRCLGSWLRLHVFPPDQVLASFPLITLA----FRSLS--DDELHEEATECICALLYCSLDR 231 (559)
T ss_pred HHHHHhhcCCChhhHHHHHHHHHhhhhhhccCCHHHHHhhhHHHHHH----HHHcc--cchhhHHHHHHHHHHHHHhhhh
Confidence 67777642 23567778888888876633211 1111111222222 22332 2222333333333332110
Q ss_pred -c--cc----------h-------------------hhhHH------------------HHHHHHHHhhcCCCCChHHHH
Q 004960 238 -A--PL----------L-------------------GDSVK------------------SIVHFSLEVSSSHNLEPNTRH 267 (721)
Q Consensus 238 -~--~~----------~-------------------~~~~~------------------~l~~~~~~~~~~~~~~~~~r~ 267 (721)
. ++ + ...+. .++..++-...+. +.++-.
T Consensus 232 ~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~~h~--~~evie 309 (559)
T KOG2081|consen 232 SEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVAGHN--DTEVIE 309 (559)
T ss_pred hccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhccCC--chhhhh
Confidence 0 00 0 00000 0111111122222 234555
Q ss_pred HHHHHHHHHHHHhHh----hhhh--cCChHHHHHHHHhhhccCCC-----CCCCCCCcHHHHHHHHHHHHHHHcC-cccc
Q 004960 268 QAIQIISWLAKYKYN----SLKK--HKLVIPILQVMCPLLAESNE-----AGEDDDLAPDRAAAEVIDTMALNLA-KHVF 335 (721)
Q Consensus 268 ~a~~~l~~l~~~~~~----~~~~--~~~~~~il~~l~~~l~~~~~-----~~~~~~~~~~~~a~~~l~~l~~~~~-~~~~ 335 (721)
.++.+|..+.+.-.. .... .+|+..++..+.+-...+.+ +++++....|....+.+..++..+| +..+
T Consensus 310 ~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~e~l 389 (559)
T KOG2081|consen 310 ASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFIIGSDECL 389 (559)
T ss_pred hhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCccccCccchhHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence 566666666542110 0110 13344445555544443331 1122223456667777777777777 4445
Q ss_pred HhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHH
Q 004960 336 PPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVS 415 (721)
Q Consensus 336 ~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 415 (721)
......+.+ .++.|+.-++++..+..++.+.+..-.+.++.++..+...- ....+|++++..+|.++++... ...
T Consensus 390 k~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~nlp--~Q~~~~~ts~ll~g~~~ew~~~-~p~ 464 (559)
T KOG2081|consen 390 KQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPEENTIMPEVLKLICNLP--EQAPLRYTSILLLGEYSEWVEQ-HPE 464 (559)
T ss_pred HHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCccccchHHHHHHHHhCCc--cchhHHHHHHHHHHHHHHHHHh-CcH
Confidence 555544444 56789999999999999998876554555666666665542 3333999999999999999853 234
Q ss_pred hhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHH
Q 004960 416 HYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKL 465 (721)
Q Consensus 416 ~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l 465 (721)
.++.++..+..++.... ....+..++..++..+.....+.++.+...+
T Consensus 465 ~le~v~~~~~~~~~~~~--~as~~a~~~~~i~~~c~~~~~~l~~~~~~l~ 512 (559)
T KOG2081|consen 465 LLEPVLRYIRQGLQLKR--LASAAALAFHRICSACRVQMTCLIPSLLELI 512 (559)
T ss_pred HHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 56777788888877664 6777888888888888766555555544433
No 40
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.56 E-value=7.8e-11 Score=123.14 Aligned_cols=393 Identities=16% Similarity=0.222 Sum_probs=258.9
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhccc-ccHHHHH
Q 004960 83 LIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFR-PHFADMQ 161 (721)
Q Consensus 83 ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~-~~~~~l~ 161 (721)
++.+|.+ .+...-..++.++..+.....|....+.+.+.+...+.++++.+|..++..++++......... -.-.+++
T Consensus 43 lf~~L~~-~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~ 121 (503)
T PF10508_consen 43 LFDCLNT-SNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELL 121 (503)
T ss_pred HHHHHhh-cChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHH
Confidence 5666664 3555556777777777765555434677788888888888888888888888887754432111 1125788
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhH-HHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcccc
Q 004960 162 ALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFI-PSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPL 240 (721)
Q Consensus 162 ~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l-~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~ 240 (721)
+.+..++.+ ++..|...|.++|..+...... ...++ +.++..+...+...+..+|..+++++..++...+..
T Consensus 122 ~~i~~~L~~-~d~~Va~~A~~~L~~l~~~~~~------~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~ 194 (503)
T PF10508_consen 122 PLIIQCLRD-PDLSVAKAAIKALKKLASHPEG------LEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEA 194 (503)
T ss_pred HHHHHHHcC-CcHHHHHHHHHHHHHHhCCchh------HHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHH
Confidence 999999999 9999999999999999875422 11121 112444444565557889999999999999888766
Q ss_pred hhhhHH-HHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHh--hhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHH
Q 004960 241 LGDSVK-SIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYN--SLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDR 317 (721)
Q Consensus 241 ~~~~~~-~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~ 317 (721)
+..... .+++.++..+.++ |.-++..+++++..+++.... .+.+. .+++.+...+....+|. +.....-
T Consensus 195 ~~~~~~sgll~~ll~eL~~d--DiLvqlnalell~~La~~~~g~~yL~~~----gi~~~L~~~l~~~~~dp--~~~~~~l 266 (503)
T PF10508_consen 195 AEAVVNSGLLDLLLKELDSD--DILVQLNALELLSELAETPHGLQYLEQQ----GIFDKLSNLLQDSEEDP--RLSSLLL 266 (503)
T ss_pred HHHHHhccHHHHHHHHhcCc--cHHHHHHHHHHHHHHHcChhHHHHHHhC----CHHHHHHHHHhccccCC--cccchhh
Confidence 654432 4667766666554 667899999999999973322 12111 35666677666655332 0111111
Q ss_pred -HHHHHHHHHHHHcCcc---ccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccH--HHH----HHhHHHHHHHHHhhc
Q 004960 318 -AAAEVIDTMALNLAKH---VFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCA--EWM----KEKLESVLHIVLGAL 387 (721)
Q Consensus 318 -~a~~~l~~l~~~~~~~---~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~--~~~----~~~l~~i~~~l~~~l 387 (721)
....++..++...+.. .+|.++..+.+.+.+.+...+..|+.++|.++.... ..+ .+.+..++..+....
T Consensus 267 ~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~ 346 (503)
T PF10508_consen 267 PGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAI 346 (503)
T ss_pred hhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHh
Confidence 1224555555543322 346777778888889999999999999999986543 222 223556677777777
Q ss_pred CCCCHhHHHHHHHHHHHHHhhhhH----H---HHH----hh-hhHHH-HHHHhccCCChHHHHHHHHHHHHHHHhh-hhc
Q 004960 388 RDPEQFVRGAASFALGQFAEYLQP----E---IVS----HY-ESVLP-CILNALEDESDEVKEKSYYALAAFCEDM-GEE 453 (721)
Q Consensus 388 ~d~~~~vr~~a~~~l~~l~~~~~~----~---~~~----~~-~~~l~-~l~~~l~~~~~~v~~~a~~al~~l~~~~-~~~ 453 (721)
......+|..++.+++.+....++ + +.. .+ ..-.. .++..++.|-+++|.++...+..++... +-.
T Consensus 347 ~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~ 426 (503)
T PF10508_consen 347 KSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQR 426 (503)
T ss_pred cCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHH
Confidence 777888999999999999654432 1 111 11 11122 6777888888999999999999988654 111
Q ss_pred cccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHh
Q 004960 454 ILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAA 491 (721)
Q Consensus 454 ~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~ 491 (721)
..-..+++++.+...-.+.++..++.=..++..++...
T Consensus 427 ~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~~ 464 (503)
T PF10508_consen 427 EICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAKSS 464 (503)
T ss_pred HHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 12234466777766666667777777777777777543
No 41
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.52 E-value=1.2e-10 Score=123.05 Aligned_cols=535 Identities=16% Similarity=0.126 Sum_probs=330.9
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHhc---CCCcHHHHH---HHHhcCCChhHHHHHHHHHHHhhhhhhcCCCHHHHHHHH
Q 004960 7 LLLIQFLMPDNDARRQAEDQIKRLAK---DPQVVPALV---QHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVK 80 (721)
Q Consensus 7 ~ll~~~~s~d~~~r~~A~~~L~~~~~---~p~~~~~l~---~il~~~~~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i~ 80 (721)
..+......+-+....+..++..+.. .|.|...+. +.+.......+|..++..++.....+ +.+......
T Consensus 124 pf~~e~~~~~dev~~~~a~~~~~~~~~v~~~~~~~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~----~~~~~~~~l 199 (759)
T KOG0211|consen 124 PFLTEAEDDEDEVLLDLAEQLGTFLPDVGGPEYAHMLLPPLELLATVEETGVREKAVESLLKVAVGL----PKEKLREHL 199 (759)
T ss_pred hHHHHhccchhHHHHHHHHHhcccchhccchhHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhc----ChHHHHHHH
Confidence 33444445555677777777766654 355544333 33334456778999998888877654 332222222
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccccHHHH
Q 004960 81 QSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADM 160 (721)
Q Consensus 81 ~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~l 160 (721)
..++..+....--.-|..++.+++..+....+...-.++.+...++.++..+.+|.++..-++.+....+. ......+
T Consensus 200 v~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~--~~~~s~v 277 (759)
T KOG0211|consen 200 VPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLES--EIVKSEV 277 (759)
T ss_pred HHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHH--HHHHhhc
Confidence 23333333321223466667777776654432234567888889999999999999999999999887765 2345677
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcccc
Q 004960 161 QALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPL 240 (721)
Q Consensus 161 ~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~ 240 (721)
++.+.++..| ....||.+|...+..+..+..... ...+.+.+.+++ ...++++.++-...+....+....++-
T Consensus 278 ~~~~~~L~~D-dqdsVr~~a~~~~~~l~~l~~~~~--d~~~~~~~~l~~----~~~d~~~~v~~~~~~~~~~L~~~~~~~ 350 (759)
T KOG0211|consen 278 LPTLIQLLRD-DQDSVREAAVESLVSLLDLLDDDD--DVVKSLTESLVQ----AVEDGSWRVSYMVADKFSELSSAVGPS 350 (759)
T ss_pred cHHHhhhhhc-chhhHHHHHHHHHHHHHHhcCCch--hhhhhhhHHHHH----HhcChhHHHHHHHhhhhhhHHHHhccc
Confidence 7888888888 778899999999999998886542 223445555555 667777777766655555554433221
Q ss_pred hhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHH
Q 004960 241 LGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAA 320 (721)
Q Consensus 241 ~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~ 320 (721)
. .-...++.....+... ..+.|.....-...++.........+-....+++.+.....+.. ..++.+..
T Consensus 351 ~--~~~~~~~~~~~l~~~~--~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~-------~~vr~a~a 419 (759)
T KOG0211|consen 351 A--TRTQLVPPVSNLLKDE--EWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNA-------LHVRSALA 419 (759)
T ss_pred c--CcccchhhHHHHhcch--hhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhccc-------chHHHHHh
Confidence 0 0011222222222222 34445544433333433222111011112233343333333322 45555555
Q ss_pred HHHHHHHHHcC-ccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccH-HHHHHhHHHHHHHHHhhcCCCCHhHHHHH
Q 004960 321 EVIDTMALNLA-KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCA-EWMKEKLESVLHIVLGALRDPEQFVRGAA 398 (721)
Q Consensus 321 ~~l~~l~~~~~-~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a 398 (721)
.....+....| +..+..+.+.....+++....+|......+..+-.... ..........+|.+...-.|.++++|.+.
T Consensus 420 ~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ai 499 (759)
T KOG0211|consen 420 SVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAI 499 (759)
T ss_pred ccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHH
Confidence 54444444555 44567777777778888888888887766544333221 22233445677888888788899999999
Q ss_pred HHHHHHHHhhhhHHHHHhh-hhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCChhHH
Q 004960 399 SFALGQFAEYLQPEIVSHY-ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQ 477 (721)
Q Consensus 399 ~~~l~~l~~~~~~~~~~~~-~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~ 477 (721)
.+.+..++...+. .++ +.+-+.+...+.+....+|.+|...+..++...| ..-+...+++.++....+++...|
T Consensus 500 l~~ip~la~q~~~---~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G--~~w~~~~~i~k~L~~~~q~~y~~R 574 (759)
T KOG0211|consen 500 LEYIPQLALQLGV---EFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG--SEWARLEEIPKLLAMDLQDNYLVR 574 (759)
T ss_pred HHHHHHHHHhhhh---HHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC--cchhHHHhhHHHHHHhcCcccchh
Confidence 9999998887663 232 2344444555777778899999999999999988 233455677777777777778899
Q ss_pred HHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCC
Q 004960 478 ETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGL 557 (721)
Q Consensus 478 ~~~l~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~ 557 (721)
...+.++..++...|..+ +...++|.+..+. .|+..++|-.+...+..+...+....... .+.+......++
T Consensus 575 ~t~l~si~~la~v~g~ei--~~~~Llp~~~~l~---~D~vanVR~nvak~L~~i~~~L~~~~~~~---~v~pll~~L~~d 646 (759)
T KOG0211|consen 575 MTTLFSIHELAEVLGQEI--TCEDLLPVFLDLV---KDPVANVRINVAKHLPKILKLLDESVRDE---EVLPLLETLSSD 646 (759)
T ss_pred hHHHHHHHHHHHHhccHH--HHHHHhHHHHHhc---cCCchhhhhhHHHHHHHHHhhcchHHHHH---HHHHHHHHhccC
Confidence 999999999999998754 3455666665544 34555778788888877776554423222 333333333446
Q ss_pred CChhhHHHHHHHHHHHHHHcc
Q 004960 558 EFSELREYTHGFFSNIAGVLE 578 (721)
Q Consensus 558 ~~~~~~~~~~~~l~~l~~~~~ 578 (721)
++.++|-.+..+++.+....-
T Consensus 647 ~~~dvr~~a~~a~~~i~l~~~ 667 (759)
T KOG0211|consen 647 QELDVRYRAILAFGSIELSRL 667 (759)
T ss_pred cccchhHHHHHHHHHHHHHHH
Confidence 788888888888887765443
No 42
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.49 E-value=2.7e-10 Score=120.45 Aligned_cols=558 Identities=15% Similarity=0.079 Sum_probs=353.8
Q ss_pred HHHHHHHHhh--cCCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccccH
Q 004960 80 KQSLIESITL--EHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHF 157 (721)
Q Consensus 80 ~~~ll~~l~~--e~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~ 157 (721)
+..+++.+.. +....++..++.-++.+....+....-..+++.+........+..|+.++..+..++...+..- ..
T Consensus 119 r~~lipf~~e~~~~~dev~~~~a~~~~~~~~~v~~~~~~~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~--~~ 196 (759)
T KOG0211|consen 119 RLELIPFLTEAEDDEDEVLLDLAEQLGTFLPDVGGPEYAHMLLPPLELLATVEETGVREKAVESLLKVAVGLPKEK--LR 196 (759)
T ss_pred hhhhhhHHHHhccchhHHHHHHHHHhcccchhccchhHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHH--HH
Confidence 4445555542 2345666666776776655432211223356666666666667788999999988887765432 24
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCc
Q 004960 158 ADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESP 237 (721)
Q Consensus 158 ~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~ 237 (721)
..+++++.+...+ .-...|..++..++..+...++.. .+.- +.....+.-++..+.++..+.+-++.++...
T Consensus 197 ~~lv~l~~~l~~~-d~~~sr~sacglf~~~~~~~~~~~----vk~e---lr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~ 268 (759)
T KOG0211|consen 197 EHLVPLLKRLATG-DWFQSRLSACGLFGKLYVSLPDDA----VKRE---LRPIVQSLCQDDTPMVRRAVASNLGNIAKVL 268 (759)
T ss_pred HHHHHHHHHccch-hhhhcchhhhhhhHHhccCCChHH----HHHH---HHHHHHhhccccchhhHHHHHhhhHHHHHHH
Confidence 5566666655544 333466777777777666554321 1112 2222223556778899999999988888755
Q ss_pred ccchhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHH
Q 004960 238 APLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDR 317 (721)
Q Consensus 238 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~ 317 (721)
+. ......+++...++..++ .+.+|..|++.+..+........ +....+.+.++....+ ..|..+.
T Consensus 269 ~~--~~~~s~v~~~~~~L~~Dd--qdsVr~~a~~~~~~l~~l~~~~~---d~~~~~~~~l~~~~~d-------~~~~v~~ 334 (759)
T KOG0211|consen 269 ES--EIVKSEVLPTLIQLLRDD--QDSVREAAVESLVSLLDLLDDDD---DVVKSLTESLVQAVED-------GSWRVSY 334 (759)
T ss_pred HH--HHHHhhccHHHhhhhhcc--hhhHHHHHHHHHHHHHHhcCCch---hhhhhhhHHHHHHhcC-------hhHHHHH
Confidence 43 111122223223333333 57799999988887776533221 1233444444443333 3477777
Q ss_pred HHHHHHHHHHHHcCcc-ccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHH--hHHHHHHHHHhhcCCCCHhH
Q 004960 318 AAAEVIDTMALNLAKH-VFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKE--KLESVLHIVLGALRDPEQFV 394 (721)
Q Consensus 318 ~a~~~l~~l~~~~~~~-~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~--~l~~i~~~l~~~l~d~~~~v 394 (721)
........+...++++ ..+...+.....+++..|..|.+...-...+.........+ ....++|.+.....|.+..|
T Consensus 335 ~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~v 414 (759)
T KOG0211|consen 335 MVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHV 414 (759)
T ss_pred HHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchH
Confidence 7777777777777742 23455666677788888999988766555555443311111 23456788888999999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhh-hccccchHHHHHHHHHhhcCCC
Q 004960 395 RGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMG-EEILPFLDPLMGKLLAALENSP 473 (721)
Q Consensus 395 r~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~-~~~~~~~~~i~~~l~~~l~~~~ 473 (721)
|.+.+..+..+...++. ......+.|.+...+++..+.|+.+..+.+..+....+ ..+..+.+..++.+.....+..
T Consensus 415 r~a~a~~~~~~~p~~~k--~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~ 492 (759)
T KOG0211|consen 415 RSALASVITGLSPILPK--ERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLL 492 (759)
T ss_pred HHHHhccccccCccCCc--CcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchh
Confidence 99888887777666652 24567888889999999999999998887765544433 2344566777788877777778
Q ss_pred hhHHHHHHHHHHHHHHHhhhcchhhHHHHH-HHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhccCChHHHHHHHH
Q 004960 474 RNLQETCMSAIGSVAAAAEQAFIPYAERVL-ELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAI 552 (721)
Q Consensus 474 ~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~-~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~ 552 (721)
+.+|.++++.+..++...|. .++.+.+ +.+...+ .+....+|..|..++..++...|.+ -+...+++.++
T Consensus 493 wRvr~ail~~ip~la~q~~~---~~~~~~~~~l~~~~l---~d~v~~Ir~~aa~~l~~l~~~~G~~---w~~~~~i~k~L 563 (759)
T KOG0211|consen 493 WRVRLAILEYIPQLALQLGV---EFFDEKLAELLRTWL---PDHVYSIREAAARNLPALVETFGSE---WARLEEIPKLL 563 (759)
T ss_pred HHHHHHHHHHHHHHHHhhhh---HHhhHHHHHHHHhhh---hhhHHHHHHHHHHHhHHHHHHhCcc---hhHHHhhHHHH
Confidence 89999999999888887772 2222222 2222222 2234567888999999999888742 12344555555
Q ss_pred hccCCCChhhHHHHHHHHHHHHHHcccCcccchhhhHHHHHhhccCCCCCccCCCCCccccccCCCCCCCCchhhhhccc
Q 004960 553 SGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSV 632 (721)
Q Consensus 553 ~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (721)
....+++.-.|...+.++..++..+|..+ +...++|.+....
T Consensus 564 ~~~~q~~y~~R~t~l~si~~la~v~g~ei--~~~~Llp~~~~l~------------------------------------ 605 (759)
T KOG0211|consen 564 AMDLQDNYLVRMTTLFSIHELAEVLGQEI--TCEDLLPVFLDLV------------------------------------ 605 (759)
T ss_pred HHhcCcccchhhHHHHHHHHHHHHhccHH--HHHHHhHHHHHhc------------------------------------
Confidence 55555567889999999999999999965 3566777766432
Q ss_pred cceeeecchhhhHHHHHHHHHHHHHHccccccchHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHHhcccCCcchh
Q 004960 633 RNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNVSLC 712 (721)
Q Consensus 633 ~~~~~~~~~~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ 712 (721)
..+..++|..++..|..+........ .=+.+.+.+..+..|.+-+||..|..+++.+-.+.....--....+.
T Consensus 606 -----~D~vanVR~nvak~L~~i~~~L~~~~--~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~~~~~~~d~~~~~~ 678 (759)
T KOG0211|consen 606 -----KDPVANVRINVAKHLPKILKLLDESV--RDEEVLPLLETLSSDQELDVRYRAILAFGSIELSRLESSLDVRDKKQ 678 (759)
T ss_pred -----cCCchhhhhhHHHHHHHHHhhcchHH--HHHHHHHHHHHhccCcccchhHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 12234578899999998877776422 23346666777777889999999999988887665554333333444
Q ss_pred HHHHH
Q 004960 713 YHFFL 717 (721)
Q Consensus 713 ~~~~~ 717 (721)
+-.|+
T Consensus 679 ~~a~~ 683 (759)
T KOG0211|consen 679 LIAFL 683 (759)
T ss_pred HHHHH
Confidence 44443
No 43
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.49 E-value=2.6e-12 Score=117.14 Aligned_cols=349 Identities=13% Similarity=0.143 Sum_probs=231.1
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHhhhhcC-ChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcccc
Q 004960 162 ALLLKCLQDETSNRVRIAALKAIGSFLEFTN-DGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPL 240 (721)
Q Consensus 162 ~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~ 240 (721)
|-+.+.+.+ .+.+.+..|..-+.++++... .+.+...-...+|.+++.+.. ....-....|.|.|..+++....-
T Consensus 74 p~lt~~l~S-dDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~---~q~~mlqfEAaWalTNiaSGtt~Q 149 (526)
T COG5064 74 PQLTQQLFS-DDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDE---IQRDMLQFEAAWALTNIASGTTQQ 149 (526)
T ss_pred HHHHHHHhh-hHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHh---cchhHHHHHHHHHHhhhccCcccc
Confidence 445555555 556666666655555554332 233333345788888885432 123334568899999998764321
Q ss_pred h-----hhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHh---hhhhcCChHHHHHHHHhhhccCCCCCCCCC
Q 004960 241 L-----GDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYN---SLKKHKLVIPILQVMCPLLAESNEAGEDDD 312 (721)
Q Consensus 241 ~-----~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~~~~~~il~~l~~~l~~~~~~~~~~~ 312 (721)
- ...+|.+++ .+.+. +.++|.++++.|++++..++. .+-....+.+++..+ .+.. -.
T Consensus 150 TkvVvd~~AVPlfiq----lL~s~--~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll----~ss~-----~~ 214 (526)
T COG5064 150 TKVVVDAGAVPLFIQ----LLSST--EDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLL----LSSA-----IH 214 (526)
T ss_pred eEEEEeCCchHHHHH----HHcCc--hHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHH----Hhcc-----ch
Confidence 1 223444444 44444 678999999999999854332 222223344444433 2221 11
Q ss_pred CcHHHHHHHHHHHHHHHcCc----cccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHH-HHHHHHHhhc
Q 004960 313 LAPDRAAAEVIDTMALNLAK----HVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLE-SVLHIVLGAL 387 (721)
Q Consensus 313 ~~~~~~a~~~l~~l~~~~~~----~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~-~i~~~l~~~l 387 (721)
.+.-+.+.+.|+.++....+ ..+...++.+.+.+.+.+...-..|+++++.++++..+.....++ .+.+.+++.|
T Consensus 215 ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElL 294 (526)
T COG5064 215 ISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELL 294 (526)
T ss_pred HHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHh
Confidence 35566778888988875441 345678888999999999999999999999999997776665554 3456899999
Q ss_pred CCCCHhHHHHHHHHHHHHHhhhhHHHHHhh-hhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchH-HHHHHH
Q 004960 388 RDPEQFVRGAASFALGQFAEYLQPEIVSHY-ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLD-PLMGKL 465 (721)
Q Consensus 388 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~-~i~~~l 465 (721)
.+++..|+.-|+..+|++.......-+-.+ -+.++.+...|.++...+|..+||+++++...-.++++..++ .+++.|
T Consensus 295 s~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpL 374 (526)
T COG5064 295 SHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPL 374 (526)
T ss_pred cCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHH
Confidence 999999999999999999876533222222 467788888888888899999999999998766666665554 678889
Q ss_pred HHhhcCCChhHHHHHHHHHHHHHHHhh--hcchhhHH--HHHHHHHHHHhccCchhhhhHHHHHHHHHHHH
Q 004960 466 LAALENSPRNLQETCMSAIGSVAAAAE--QAFIPYAE--RVLELLKIFMVLTNDEDLRSRARATELLGLVA 532 (721)
Q Consensus 466 ~~~l~~~~~~v~~~~l~~l~~l~~~~~--~~~~~~~~--~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~ 532 (721)
..+++..+...+.+++++++......- .+...|+- .++..|..++.-.++ .+...+++++..+.
T Consensus 375 i~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dN---kiiev~LD~~eniL 442 (526)
T COG5064 375 IHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDN---KIIEVALDAIENIL 442 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCc---cchhhhHHHHHHHH
Confidence 999999999999999999887654321 23334432 255566666654322 23334566666654
No 44
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.48 E-value=4.2e-10 Score=117.69 Aligned_cols=406 Identities=18% Similarity=0.213 Sum_probs=250.5
Q ss_pred HHHhccCCcHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHh
Q 004960 123 LFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFRE 202 (721)
Q Consensus 123 l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 202 (721)
++..+++.+.+....++.++..+++.... ....+.+.+.+..+|.+ +++.||..+++.+.+++...........-.+
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~--~~l~~~~~~~L~~gL~h-~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~ 119 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSP--DSLLPQYQPFLQRGLTH-PSPKVRRLALKQLGRIARHSEGAAQLLVDNE 119 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCH--HHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCHHHHHHhcCcc
Confidence 78888887777778888899998876532 22368888999999999 9999999999999988765422111111245
Q ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcccchhhhH-HHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhH
Q 004960 203 FIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSV-KSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKY 281 (721)
Q Consensus 203 ~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~ 281 (721)
+++.++. ++.+++.++...|.++|..++..... +...+ +.++..+...+... ++.+|..+++++..+++..+
T Consensus 120 l~~~i~~----~L~~~d~~Va~~A~~~L~~l~~~~~~-~~~l~~~~~~~~L~~l~~~~--~~~vR~Rv~el~v~i~~~S~ 192 (503)
T PF10508_consen 120 LLPLIIQ----CLRDPDLSVAKAAIKALKKLASHPEG-LEQLFDSNLLSKLKSLMSQS--SDIVRCRVYELLVEIASHSP 192 (503)
T ss_pred HHHHHHH----HHcCCcHHHHHHHHHHHHHHhCCchh-HHHHhCcchHHHHHHHHhcc--CHHHHHHHHHHHHHHHhcCH
Confidence 5666665 78889999999999999999986532 22221 11133333344343 56789999999999988776
Q ss_pred hhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcC-cccc--HhHHHHHHhhhcCC--Ch----h
Q 004960 282 NSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA-KHVF--PPVFEFASVSCQNA--SP----K 352 (721)
Q Consensus 282 ~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~-~~~~--~~i~~~l~~~l~~~--~~----~ 352 (721)
...... .-..+++.++..+.. +|.-++..+.+++..++..-. -.++ ..+++.+...+.+. ++ -
T Consensus 193 ~~~~~~-~~sgll~~ll~eL~~-------dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~ 264 (503)
T PF10508_consen 193 EAAEAV-VNSGLLDLLLKELDS-------DDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSL 264 (503)
T ss_pred HHHHHH-HhccHHHHHHHHhcC-------ccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccch
Confidence 654210 001255555554443 235677888899999887322 1111 22455555544332 22 1
Q ss_pred hHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHH--H----HHhhhhHHHHHHH
Q 004960 353 YREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPE--I----VSHYESVLPCILN 426 (721)
Q Consensus 353 ~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~----~~~~~~~l~~l~~ 426 (721)
.-.+.+..+|.++...+..+....+.++..+...+.+.++..+..|+.++|.++...... + .+.++.++..+..
T Consensus 265 ~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~ 344 (503)
T PF10508_consen 265 LLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGD 344 (503)
T ss_pred hhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHH
Confidence 223445677777776666666677888999999999999999999999999998654321 1 1234566777777
Q ss_pred hccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHH
Q 004960 427 ALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELL 506 (721)
Q Consensus 427 ~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~~l 506 (721)
...+...++|.+++.+++.++......-..-+..+.....+. .++.... . .+
T Consensus 345 ~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~----------------------~~~~~~~--~----~l 396 (503)
T PF10508_consen 345 AIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYES----------------------LSGSPLS--N----LL 396 (503)
T ss_pred HhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH----------------------hcCCchH--H----HH
Confidence 777777889999999999998654321111111111111111 2211110 0 22
Q ss_pred HHHHhccCchhhhhHHHHHHHHHHHHHhh-chhhccCChHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHcc
Q 004960 507 KIFMVLTNDEDLRSRARATELLGLVAESV-GRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLE 578 (721)
Q Consensus 507 ~~~l~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~ 578 (721)
.+.++ .|-.++|..++..+..++..- |-..+ -..+.+++.++.--.+.+.+.++.=..++..+++...
T Consensus 397 ~~~~~---qPF~elr~a~~~~l~~l~~~~Wg~~~i-~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~~~ 465 (503)
T PF10508_consen 397 MSLLK---QPFPELRCAAYRLLQALAAQPWGQREI-CSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAKSST 465 (503)
T ss_pred HHHhc---CCchHHHHHHHHHHHHHhcCHHHHHHH-HhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhccc
Confidence 23332 233456667777777665211 11111 1124566666665555577777776777777775444
No 45
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=3.4e-09 Score=111.98 Aligned_cols=470 Identities=14% Similarity=0.123 Sum_probs=278.7
Q ss_pred HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCC-cHHHHHHHHHHHHHhhhhhhhc
Q 004960 74 QLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSE-QEEHREVALILFSSLTETIGQT 152 (721)
Q Consensus 74 ~~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~-~~~~~~~al~~l~~i~~~~~~~ 152 (721)
+..+.+.+.|++.+. +.+..||..+|..++.+++...+ .--.+.+..+.+.+.-. +....++|+.+++.++... -.
T Consensus 337 eivE~vie~Lls~l~-d~dt~VrWSaAKg~grvt~rlp~-~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rG-lL 413 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALS-DTDTVVRWSAAKGLGRVTSRLPP-ELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRG-LL 413 (1133)
T ss_pred HHHHHHHHHHHHhcc-CCcchhhHHHHHHHHHHHccCcH-HHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC-Cc
Confidence 667788888888887 68999999999999999987642 13344566666644322 3566779999999988542 11
Q ss_pred ccccHHHHHHHHHHhhCCC-------CCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHH-HHHhhcCCHHHHH
Q 004960 153 FRPHFADMQALLLKCLQDE-------TSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVS-RQCLASGEEDVAV 224 (721)
Q Consensus 153 ~~~~~~~l~~~l~~~l~~~-------~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l-~~~l~~~~~~~~~ 224 (721)
+...++.++|++.+++.-+ ...+||.+|+..+..+.+.++.. + ..+++..+...+ ..++-|.+-..|.
T Consensus 414 lps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~-~---l~p~l~~L~s~LL~~AlFDrevncRR 489 (1133)
T KOG1943|consen 414 LPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPS-D---LKPVLQSLASALLIVALFDREVNCRR 489 (1133)
T ss_pred chHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChh-h---hhHHHHHHHHHHHHHHhcCchhhHhH
Confidence 2235678899988887631 24579999999988888776432 2 233333333322 2355667778899
Q ss_pred HHHHHHHHHhcCcccc-hhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhh-hc
Q 004960 225 IAFEIFDELIESPAPL-LGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPL-LA 302 (721)
Q Consensus 225 ~a~~~l~~l~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~-l~ 302 (721)
+|..++.+.+...+.+ .+--+-..+ +..+-..|.++..-+...+... ..|..++++.++.. ++
T Consensus 490 AAsAAlqE~VGR~~n~p~Gi~Lis~~---------dy~sV~~rsNcy~~l~~~ia~~------~~y~~~~f~~L~t~Kv~ 554 (1133)
T KOG1943|consen 490 AASAALQENVGRQGNFPHGISLISTI---------DYFSVTNRSNCYLDLCVSIAEF------SGYREPVFNHLLTKKVC 554 (1133)
T ss_pred HHHHHHHHHhccCCCCCCchhhhhhc---------chhhhhhhhhHHHHHhHHHHhh------hhHHHHHHHHHHhcccc
Confidence 9999999998875543 111111111 1111222333333222111111 13566777666654 88
Q ss_pred cCCCCCCCCCCcHHHHHHHHHHHHHHHcCccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHH-------HHh
Q 004960 303 ESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWM-------KEK 375 (721)
Q Consensus 303 ~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~-------~~~ 375 (721)
+|+ ...|.-+..++..++...++......++.+.....+.+...|++...+.|.+..++...- ...
T Consensus 555 HWd-------~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~ 627 (1133)
T KOG1943|consen 555 HWD-------VKIRELAAYALHKLSLTEPKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENR 627 (1133)
T ss_pred ccc-------HHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHH
Confidence 887 567888999999999888766665666666666778888999999999888876543211 111
Q ss_pred H---HHHHHHHHhhcCCC--CHhHHHHHHHHHHHHHhhhhHHHHHhh-hhHHHHHHHhccCCChHHHHHHHHHHHHHHHh
Q 004960 376 L---ESVLHIVLGALRDP--EQFVRGAASFALGQFAEYLQPEIVSHY-ESVLPCILNALEDESDEVKEKSYYALAAFCED 449 (721)
Q Consensus 376 l---~~i~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~ 449 (721)
+ ..+++.+...-... ....|...+..+..+...-..-....+ +..-..+.+.+.+++ .+|..+.++++.++..
T Consensus 628 i~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~ 706 (1133)
T KOG1943|consen 628 IAGLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVST 706 (1133)
T ss_pred hhhhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHH
Confidence 1 12233222222122 245666777777766654332222222 223333344444554 7999999999999987
Q ss_pred hhhccccchHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHhccCch-hhhhHHHHHHH
Q 004960 450 MGEEILPFLDPLMGKLLAALENS-PRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDE-DLRSRARATEL 527 (721)
Q Consensus 450 ~~~~~~~~~~~i~~~l~~~l~~~-~~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~-~~~~~~~~~~~ 527 (721)
.-..=.....+++......+.+. +...|....-+++.+-.. .+.-.+.+.+ ....+...... ...-|...+..
T Consensus 707 y~~~d~~~~~~li~~~ls~~~~~~~~~~r~g~~lal~~lp~~---~i~~~~q~~l--c~~~l~~~p~d~~a~aR~~~V~a 781 (1133)
T KOG1943|consen 707 YVKADEGEEAPLITRYLSRLTKCSEERIRRGLILALGVLPSE---LIHRHLQEKL--CKLVLELLPSDAWAEARQQNVKA 781 (1133)
T ss_pred HHhcCchhhhHHHHHHHHHhcCchHHHHHHHHHHHHccCcHH---hhchHHHHHH--HHHHhccCcccccHHHHHHHHHH
Confidence 63211111124555555555444 455555555444443211 1111122222 22222221111 23446667777
Q ss_pred HHHHHHhhchhhccCChHHHHHHHHhccCCC--------ChhhHHHHHHHHHHHHHHcc
Q 004960 528 LGLVAESVGRARMEPILPPFVEAAISGFGLE--------FSELREYTHGFFSNIAGVLE 578 (721)
Q Consensus 528 l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~--------~~~~~~~~~~~l~~l~~~~~ 578 (721)
+..+...++...+..-..++++.+++++.+- ..-+|++++.++..+...+.
T Consensus 782 l~~v~~~~~~~~~~~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~~~~l~ 840 (1133)
T KOG1943|consen 782 LAHVCKTVTSLLFSESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSLLDTLS 840 (1133)
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhhhhhhc
Confidence 7777777765566777888888888887642 12389999999988866554
No 46
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=1.1e-07 Score=103.98 Aligned_cols=144 Identities=23% Similarity=0.325 Sum_probs=120.3
Q ss_pred hHHHHHHHHhcCC--ChHHHHHHHHHHHHHhcCCCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhcCCCHHHHHHHH
Q 004960 3 QSLELLLIQFLMP--DNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVK 80 (721)
Q Consensus 3 ~~l~~ll~~~~s~--d~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i~ 80 (721)
.++..++....+| +++.|.+|.+.+.+++..|+.+.....++..++++.+|++|..+|.+.++.+|+.+|.+.+..+|
T Consensus 10 ~~lldavv~~~~~~~s~~~r~eA~~~l~~lke~~~~~~~~~~iL~~s~~~~~k~f~Lqlle~vik~~W~~~~~~~r~glk 89 (1041)
T KOG2020|consen 10 SELLDAVVVTLNPEGSNEERGEAQQILEELKEEPDSWLQVYLILKLSTNPILKYFALQLLENVIKFRWNSLPVEERVGLK 89 (1041)
T ss_pred HHHHHhHHHHhCcccchHHHHHHHHHHHHHHhCcchHHHHHHHHhccCCchhheeeHHHHHHHHHHhcccCCccccHHHH
Confidence 4566666666655 78999999999999999999999999999888899999999999999999999999999999999
Q ss_pred HHHHHHHhhcC--------CHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhh
Q 004960 81 QSLIESITLEH--------SAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTET 148 (721)
Q Consensus 81 ~~ll~~l~~e~--------~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~ 148 (721)
+..+....... ...++++++.++-.|+..++|. .||+++|.+.+.... +...++.++.++..+.+.
T Consensus 90 ~~v~~~~~~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~eWp~-~wp~~i~dl~~~s~~-s~~~~el~m~Il~lLsEd 163 (1041)
T KOG2020|consen 90 NYVLTLIIEASPDEDVSETEKHLLNKLNLILVQIVKREWPA-IWPTFIPDLAQSSKT-SETVCELSMIILLLLSEE 163 (1041)
T ss_pred HHHHHHHhhcCCcHhHHHHHHHHHHHHhHHHHHHHHHHHHh-hcchhhhhHHHHhhc-CcccchHHHHHHHHHHHH
Confidence 99888776321 3457888899999999999995 999999999998874 345556666666666654
No 47
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=2.4e-07 Score=97.67 Aligned_cols=317 Identities=15% Similarity=0.174 Sum_probs=202.1
Q ss_pred HHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCC-CCCCCCcHHHHHHHHHHHHHHHcCc-cccH-----hH
Q 004960 266 RHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEA-GEDDDLAPDRAAAEVIDTMALNLAK-HVFP-----PV 338 (721)
Q Consensus 266 r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~-~~~~~~~~~~~a~~~l~~l~~~~~~-~~~~-----~i 338 (721)
+.+|..++..+++..++ +.++.++..++..+....+. .+.++......|...++.++..+.+ ..+. -+
T Consensus 389 ~~Aa~~~l~~~~~KR~k-----e~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~fl 463 (1010)
T KOG1991|consen 389 DTAALDFLTTLVSKRGK-----ETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFL 463 (1010)
T ss_pred cHHHHHHHHHHHHhcch-----hhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHH
Confidence 35577777777765433 23667777777777654433 2233334445677888888866552 2222 23
Q ss_pred HHHHHhhhcCCChhhHhHHHHHHHHHhh-ccHHHHHHhHHHHHHHHHhhcC-CCCHhHHHHHHHHHHHHHhhhh---HHH
Q 004960 339 FEFASVSCQNASPKYREAAVTAIGIISE-GCAEWMKEKLESVLHIVLGALR-DPEQFVRGAASFALGQFAEYLQ---PEI 413 (721)
Q Consensus 339 ~~~l~~~l~~~~~~~r~~al~~l~~i~~-~~~~~~~~~l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~---~~~ 413 (721)
.+++...++++.-..|..||+.++.+++ ..++ ...+.+++....++|. |.+-.||..|+-+|..+....+ +.+
T Consensus 464 v~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d--~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~ 541 (1010)
T KOG1991|consen 464 VNHVFPEFQSPYGYLRARACWVLSQFSSIDFKD--PNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKV 541 (1010)
T ss_pred HHHhhHhhcCchhHHHHHHHHHHHHHHhccCCC--hHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhH
Confidence 4445555788888899999999999984 3322 2345677888888887 8889999999999999988776 346
Q ss_pred HHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHh----hcC---CChhHHH------HH
Q 004960 414 VSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAA----LEN---SPRNLQE------TC 480 (721)
Q Consensus 414 ~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~----l~~---~~~~v~~------~~ 480 (721)
.+++++++..+++..++-+.+. ....+..++...++.+.||..++.+.|... +.+ .+..... .+
T Consensus 542 ~~hvp~~mq~lL~L~ne~End~---Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~Gi 618 (1010)
T KOG1991|consen 542 SAHVPPIMQELLKLSNEVENDD---LTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGI 618 (1010)
T ss_pred hhhhhHHHHHHHHHHHhcchhH---HHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHH
Confidence 7788888888888887665433 345677888888999999988888776554 443 2222222 34
Q ss_pred HHHHHHHHHHhhhc---chhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCC
Q 004960 481 MSAIGSVAAAAEQA---FIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGL 557 (721)
Q Consensus 481 l~~l~~l~~~~~~~---~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~ 557 (721)
+.++.++.....+. +....+.++|.+..++.... .+.-..+++....+.... + .+.|..-++++.+.+.+++
T Consensus 619 L~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i---~dfyeE~~ei~~~~t~~~-~-~Isp~mW~ll~li~e~~~~ 693 (1010)
T KOG1991|consen 619 LRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDI---TDFYEELLEIVSSLTFLS-K-EISPIMWGLLELILEVFQD 693 (1010)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHhhhhhhh-c-ccCHHHHHHHHHHHHHHhh
Confidence 44445555554432 22334556666666665421 122234454444443221 2 5677778889999998888
Q ss_pred CChhhHHHHHHHHHHHHHHcccCcc---cchhhhHHHHHhhcc
Q 004960 558 EFSELREYTHGFFSNIAGVLEDGFA---QYLPLVVPLAFSSCN 597 (721)
Q Consensus 558 ~~~~~~~~~~~~l~~l~~~~~~~~~---~~l~~i~~~ll~~~~ 597 (721)
+..+.-..++-++.+++...+..+. .|+..+...+-..+.
T Consensus 694 ~~~dyf~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~ 736 (1010)
T KOG1991|consen 694 DGIDYFTDMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLT 736 (1010)
T ss_pred hhHHHHHHHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHc
Confidence 7777777788888888876666442 234444444444443
No 48
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=4e-09 Score=107.40 Aligned_cols=434 Identities=11% Similarity=0.133 Sum_probs=266.9
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHhc-CCCc----HHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhcCCCHHHHHHHHH
Q 004960 7 LLLIQFLMPDNDARRQAEDQIKRLAK-DPQV----VPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQ 81 (721)
Q Consensus 7 ~ll~~~~s~d~~~r~~A~~~L~~~~~-~p~~----~~~l~~il~~~~~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i~~ 81 (721)
.+..+..+.|.++++=..-+|-+|.. +|+. +.++-..| .++++-+|-.|.-.+..+ --.....|.-
T Consensus 75 ~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLSIntfQk~L-~DpN~LiRasALRvlSsI--------Rvp~IaPI~l 145 (968)
T KOG1060|consen 75 AVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLSINTFQKAL-KDPNQLIRASALRVLSSI--------RVPMIAPIML 145 (968)
T ss_pred HHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeeeHHHHHhhh-cCCcHHHHHHHHHHHHhc--------chhhHHHHHH
Confidence 34445555566666666666655443 4442 22333322 234555665555443222 1112233333
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccccHHHHH
Q 004960 82 SLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQ 161 (721)
Q Consensus 82 ~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~l~ 161 (721)
..++-...|+.+.||+.+|.++-.+.+-+. ++.++++..+..++.+.++.+.-.|+.++..+|-..-+.+.+++..+.
T Consensus 146 lAIk~~~~D~s~yVRk~AA~AIpKLYsLd~--e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHknyrklC 223 (968)
T KOG1060|consen 146 LAIKKAVTDPSPYVRKTAAHAIPKLYSLDP--EQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLC 223 (968)
T ss_pred HHHHHHhcCCcHHHHHHHHHhhHHHhcCCh--hhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHHHHHHH
Confidence 334444468999999999999999988764 367789999999999999999999999999998766555666666666
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHhhhhc-CCh----------h-------------hHHHHHhhHHHHHHHHHHHhhc
Q 004960 162 ALLLKCLQDETSNRVRIAALKAIGSFLEFT-NDG----------A-------------EVVKFREFIPSILNVSRQCLAS 217 (721)
Q Consensus 162 ~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~-~~~----------~-------------~~~~~~~~l~~ll~~l~~~l~~ 217 (721)
.++. + -+.=-+...+..|.++++.. .++ . ..-....=+..+++.+..++++
T Consensus 224 ~ll~----d-vdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S 298 (968)
T KOG1060|consen 224 RLLP----D-VDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQS 298 (968)
T ss_pred hhcc----c-hhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhc
Confidence 5543 2 22222334555665554421 000 0 0000011123455666667788
Q ss_pred CCHHHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHH
Q 004960 218 GEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVM 297 (721)
Q Consensus 218 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l 297 (721)
.++.+..++++.+..++-.. ....++..+++.+.. +.++++..+..+..++...+..+.+ +++..
T Consensus 299 ~n~sVVmA~aql~y~lAP~~------~~~~i~kaLvrLLrs---~~~vqyvvL~nIa~~s~~~~~lF~P--~lKsF---- 363 (968)
T KOG1060|consen 299 RNPSVVMAVAQLFYHLAPKN------QVTKIAKALVRLLRS---NREVQYVVLQNIATISIKRPTLFEP--HLKSF---- 363 (968)
T ss_pred CCcHHHHHHHhHHHhhCCHH------HHHHHHHHHHHHHhc---CCcchhhhHHHHHHHHhcchhhhhh--hhhce----
Confidence 89999999988888777532 223344444444433 3456777777777777655554432 12221
Q ss_pred HhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcCccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHH
Q 004960 298 CPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLE 377 (721)
Q Consensus 298 ~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~ 377 (721)
+ +... .+......-+..+.......-+..++..+..++++.+-..-.+++.++|..+.... ..-+
T Consensus 364 f--v~ss---------Dp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~----sv~~ 428 (968)
T KOG1060|consen 364 F--VRSS---------DPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIG----SVTD 428 (968)
T ss_pred E--eecC---------CHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhC----chhh
Confidence 1 0111 12223223333444434445567889999999998877666667888888876533 2345
Q ss_pred HHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCC-ChHHHHHHHHHHHHHHHhhhhcccc
Q 004960 378 SVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDE-SDEVKEKSYYALAAFCEDMGEEILP 456 (721)
Q Consensus 378 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~-~~~v~~~a~~al~~l~~~~~~~~~~ 456 (721)
..+..++..++..+..|...+...|..+...-+....+++.++ .+.+... .+.-|...+|.++..++.. ..
T Consensus 429 tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~ii~~L----a~lldti~vp~ARA~IiWLige~~e~v----pr 500 (968)
T KOG1060|consen 429 TCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLEILFQL----ARLLDTILVPAARAGIIWLIGEYCEIV----PR 500 (968)
T ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHHHHHHH----HHHhhhhhhhhhhceeeeeehhhhhhc----ch
Confidence 6777788888888889999999999999888765544443333 3333322 2456888889999888663 34
Q ss_pred chHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhc
Q 004960 457 FLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQA 494 (721)
Q Consensus 457 ~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~~ 494 (721)
..++++..+.+.+.+....++.+++.....+.....++
T Consensus 501 i~PDVLR~laksFs~E~~evKlQILnL~aKLyl~~~~~ 538 (968)
T KOG1060|consen 501 IAPDVLRKLAKSFSDEGDEVKLQILNLSAKLYLTNIDQ 538 (968)
T ss_pred hchHHHHHHHHhhccccchhhHHHHHhhhhheEechhh
Confidence 56788999999999999999999998777665444433
No 49
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=1.2e-07 Score=97.61 Aligned_cols=589 Identities=13% Similarity=0.123 Sum_probs=310.9
Q ss_pred HhcCCChHHHHHHHHHHHHHhcC--CCcHHHHHHHHhcC-C------ChhHHHHHHHHHHHhhhhhhcCCCHHHHHHHHH
Q 004960 11 QFLMPDNDARRQAEDQIKRLAKD--PQVVPALVQHLRTA-K------TPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQ 81 (721)
Q Consensus 11 ~~~s~d~~~r~~A~~~L~~~~~~--p~~~~~l~~il~~~-~------~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i~~ 81 (721)
.+.+....++++-.+.|.-+.+. |+-|+.|+.=+.+. + ...++..|-.++|+.=. ..-+++.-.+||-
T Consensus 96 lMl~s~~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~---efrSdaL~~EIK~ 172 (960)
T KOG1992|consen 96 LMLSSPFNIQKQLSEALSLIGKRDFPDKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRP---EFRSDALWLEIKL 172 (960)
T ss_pred HHhcCcHHHHHHHHHHHHHHhccccchhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCc---ccccHHHHHHHHH
Confidence 33566677888888887666542 66666666655431 1 23445455444444311 1123344444443
Q ss_pred HHH--------------HHHh-hcCCHHHH-------HHHHHHHHHHHccccCC---CCCcchHHHHHHhccCCcH----
Q 004960 82 SLI--------------ESIT-LEHSAPVR-------RASANVVSIIAKYAVPA---GEWPDLLPFLFQFSQSEQE---- 132 (721)
Q Consensus 82 ~ll--------------~~l~-~e~~~~vr-------~~~~~~l~~i~~~~~~~---~~~~~ll~~l~~~l~~~~~---- 132 (721)
.|- +... .+.+...- ..++...-.+.-++.|+ +...+.++...+.++.+++
T Consensus 173 vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k~l~~~~p~le~ 252 (960)
T KOG1992|consen 173 VLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHKLLTYDNPLLES 252 (960)
T ss_pred HHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHHHHhccCccccc
Confidence 221 1111 12233311 22222333334456663 2224456666666653322
Q ss_pred ---------HHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCCHHHH-----HHHHHHHHHhhhhcCChhhHH
Q 004960 133 ---------EHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVR-----IAALKAIGSFLEFTNDGAEVV 198 (721)
Q Consensus 133 ---------~~~~~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr-----~~a~~~l~~l~~~~~~~~~~~ 198 (721)
+.+...+..+.-.....++.+.+++++++...-+++.+ ..+..| ..|+..|..+++...-. ..-
T Consensus 253 ~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~-~s~~~kyD~Lvs~Al~FLt~V~~r~~y~-~~F 330 (960)
T KOG1992|consen 253 DEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVS-TSPDTKYDYLVSKALQFLTSVSRRPHYA-ELF 330 (960)
T ss_pred CcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHh-cCCCccHHHHHHHHHHHHHHHHhhhhhH-hhh
Confidence 33445555566566667788888899988887777765 443333 34556666555422100 000
Q ss_pred HHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 004960 199 KFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAK 278 (721)
Q Consensus 199 ~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~ 278 (721)
.-.+.+..+.+. +--++-..|..-- ++.+.. -++.+-..++.+++ +.-|+.|++++..+++
T Consensus 331 ~~~~vl~~i~e~----VvlpN~~lR~eDe----ElFED~----------pleYiRRDlEGsDv-dTRRR~a~dlvrgL~~ 391 (960)
T KOG1992|consen 331 EGENVLAQICEK----VVLPNLILREEDE----ELFEDN----------PLEYIRRDLEGSDV-DTRRRAAIDLVRGLCK 391 (960)
T ss_pred cchHHHHHHHHh----hcccccccchhhH----HHhccC----------HHHHHHHhcccCCc-chhHHHHHHHHHHHHH
Confidence 001222222221 1111111111110 111111 22233333334432 3457788899999998
Q ss_pred HhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcC---------cc---ccHhHHHHHHhhh
Q 004960 279 YKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA---------KH---VFPPVFEFASVSC 346 (721)
Q Consensus 279 ~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~---------~~---~~~~i~~~l~~~l 346 (721)
+....+. +.+...++.++...+.. ...+|.-...+..++..++.... .. +..-+...+...+
T Consensus 392 ~fe~~vt--~v~~~~v~~~l~~y~~n----PS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L 465 (960)
T KOG1992|consen 392 NFEGQVT--GVFSSEVQRLLDQYSKN----PSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDL 465 (960)
T ss_pred HhcchhH--HHHHHHHHHHHHHhccC----CCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHh
Confidence 7543321 12333333333322221 22347766666666666654321 01 1111122222233
Q ss_pred cC----CChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhH---------HH
Q 004960 347 QN----ASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQP---------EI 413 (721)
Q Consensus 347 ~~----~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---------~~ 413 (721)
.+ +.+-.|.+++..+...-...++ +++-.++|.+...|..+...|-..|+.++..+.....+ .+
T Consensus 466 ~s~~vn~~pilka~aIKy~~~FR~ql~~---~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~i 542 (960)
T KOG1992|consen 466 LSPNVNEFPILKADAIKYIYTFRNQLGK---EHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDI 542 (960)
T ss_pred ccCccccccchhhcccceeeeecccCCh---HHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhc
Confidence 33 3455667766544433333332 35567889999999999999999999999998654332 33
Q ss_pred HHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcC----C-ChhHHHHHHHHHHHHH
Q 004960 414 VSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALEN----S-PRNLQETCMSAIGSVA 488 (721)
Q Consensus 414 ~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~----~-~~~v~~~~l~~l~~l~ 488 (721)
.++...++..+++.+.-+...--....+++.+++....+.+.|+.+.++..|-+.+.. + ++..-...+++++.++
T Consensus 543 ap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li 622 (960)
T KOG1992|consen 543 APFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLI 622 (960)
T ss_pred chHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHH
Confidence 4566667777777776665444466778899998888888889988888877776543 2 4556677888888887
Q ss_pred HHhhhc----chhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhc-cCCCChhhH
Q 004960 489 AAAEQA----FIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISG-FGLEFSELR 563 (721)
Q Consensus 489 ~~~~~~----~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~-l~~~~~~~~ 563 (721)
...++. ...+-..++|.+..++... -.+.-..++..++.+....+. ...+....+++.+++- +.+... ..
T Consensus 623 ~~t~~~~~~~vs~~e~aL~p~fq~Il~eD---I~EfiPYvfQlla~lve~~~~-~ip~~~~~l~~~lLsp~lW~r~g-Ni 697 (960)
T KOG1992|consen 623 RKTCKANPSAVSSLEEALFPVFQTILSED---IQEFIPYVFQLLAVLVEHSSG-TIPDSYSPLFPPLLSPNLWKRSG-NI 697 (960)
T ss_pred HHHhccCchHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcCC-CCchhHHHHHHHhcCHHHHhhcC-Cc
Confidence 766532 3456677888888877531 123445677788888766544 3334444555554331 111111 12
Q ss_pred HHHHHHHHHHHHHcccCcc--cchhhhHHHHHhhccCCCCCccCCCCCccccccCCCCCCCCchhhhhccccceeeecch
Q 004960 564 EYTHGFFSNIAGVLEDGFA--QYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGV 641 (721)
Q Consensus 564 ~~~~~~l~~l~~~~~~~~~--~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (721)
.++...+..+.+.....+. ..++.++..+-+.+..+.
T Consensus 698 palvrLl~aflk~g~~~~~~~~~l~~iLGifqkLiaSka----------------------------------------- 736 (960)
T KOG1992|consen 698 PALVRLLQAFLKTGSQIVEAADKLSGILGIFQKLIASKA----------------------------------------- 736 (960)
T ss_pred HHHHHHHHHHHhcCchhhcccccchhHHHHHHHHhcCcc-----------------------------------------
Confidence 2344455555554444333 333333333322211100
Q ss_pred hhhHHHHHHHHHHHHHHcc-ccccchHHHHHHHHHhcccC
Q 004960 642 LDEKAAATQALGLFALHTK-SSYAPFLEESLKILVRHASY 680 (721)
Q Consensus 642 ~~~k~~a~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~~~ 680 (721)
.-..+...+..+....+ ..+.||+.++...+.+++..
T Consensus 737 --~Dh~GF~LLn~i~~~~~~~~~~py~k~i~~llf~Rlqn 774 (960)
T KOG1992|consen 737 --NDHHGFYLLNTIIESIPPNELAPYMKQIFGLLFQRLQN 774 (960)
T ss_pred --cchhHHHHHHHHHhcCCHhhhhHHHHHHHHHHHHHHhc
Confidence 01346677777777776 44688999999888888764
No 50
>PRK09687 putative lyase; Provisional
Probab=99.38 E-value=1e-10 Score=111.60 Aligned_cols=253 Identities=13% Similarity=0.084 Sum_probs=175.0
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcccc
Q 004960 161 QALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPL 240 (721)
Q Consensus 161 ~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~ 240 (721)
.+.+...|.| .+..||..++++|..+=. ...++.+.. .+.++++.+|..+.+.|+++......
T Consensus 25 ~~~L~~~L~d-~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~----ll~~~d~~vR~~A~~aLg~lg~~~~~- 87 (280)
T PRK09687 25 DDELFRLLDD-HNSLKRISSIRVLQLRGG-----------QDVFRLAIE----LCSSKNPIERDIGADILSQLGMAKRC- 87 (280)
T ss_pred HHHHHHHHhC-CCHHHHHHHHHHHHhcCc-----------chHHHHHHH----HHhCCCHHHHHHHHHHHHhcCCCccc-
Confidence 3455667788 899999999999874421 123333333 56778999999999999998653321
Q ss_pred hhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHH
Q 004960 241 LGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAA 320 (721)
Q Consensus 241 ~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~ 320 (721)
. ...++.+...+. ++.++.+|..++..++.++..... ..+..++.+...+.+. ++.+|..+.
T Consensus 88 ~----~~a~~~L~~l~~-~D~d~~VR~~A~~aLG~~~~~~~~------~~~~a~~~l~~~~~D~-------~~~VR~~a~ 149 (280)
T PRK09687 88 Q----DNVFNILNNLAL-EDKSACVRASAINATGHRCKKNPL------YSPKIVEQSQITAFDK-------STNVRFAVA 149 (280)
T ss_pred h----HHHHHHHHHHHh-cCCCHHHHHHHHHHHhcccccccc------cchHHHHHHHHHhhCC-------CHHHHHHHH
Confidence 1 223333333322 223688999999999887632211 1233444444444433 378888888
Q ss_pred HHHHHHHHHcCccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHH
Q 004960 321 EVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASF 400 (721)
Q Consensus 321 ~~l~~l~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~ 400 (721)
.+|..+. + +..++.+...+++++|.+|..|+.++|.+... -+.+++.|...++|+++.||..|.+
T Consensus 150 ~aLg~~~----~---~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~--------~~~~~~~L~~~L~D~~~~VR~~A~~ 214 (280)
T PRK09687 150 FALSVIN----D---EAAIPLLINLLKDPNGDVRNWAAFALNSNKYD--------NPDIREAFVAMLQDKNEEIRIEAII 214 (280)
T ss_pred HHHhccC----C---HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCC--------CHHHHHHHHHHhcCCChHHHHHHHH
Confidence 8775432 1 45677777788899999999999999998322 2356777888899999999999999
Q ss_pred HHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhc-CCChhHHHH
Q 004960 401 ALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALE-NSPRNLQET 479 (721)
Q Consensus 401 ~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~-~~~~~v~~~ 479 (721)
+||.+... ..+|.|++.+++++ ++..++.+|+++-. +..++.|.+++. +++..++..
T Consensus 215 aLg~~~~~----------~av~~Li~~L~~~~--~~~~a~~ALg~ig~----------~~a~p~L~~l~~~~~d~~v~~~ 272 (280)
T PRK09687 215 GLALRKDK----------RVLSVLIKELKKGT--VGDLIIEAAGELGD----------KTLLPVLDTLLYKFDDNEIITK 272 (280)
T ss_pred HHHccCCh----------hHHHHHHHHHcCCc--hHHHHHHHHHhcCC----------HhHHHHHHHHHhhCCChhHHHH
Confidence 99985432 67888899998865 67788888887742 246666777775 668889988
Q ss_pred HHHHHH
Q 004960 480 CMSAIG 485 (721)
Q Consensus 480 ~l~~l~ 485 (721)
+.+++.
T Consensus 273 a~~a~~ 278 (280)
T PRK09687 273 AIDKLK 278 (280)
T ss_pred HHHHHh
Confidence 888765
No 51
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=99.36 E-value=4.1e-09 Score=108.08 Aligned_cols=378 Identities=15% Similarity=0.159 Sum_probs=242.6
Q ss_pred HHHHHhccCCcH---HHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChh--
Q 004960 121 PFLFQFSQSEQE---EHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGA-- 195 (721)
Q Consensus 121 ~~l~~~l~~~~~---~~~~~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~-- 195 (721)
|.++..+.+.+. ...+..+.++..++.... .+......++..+....+.+.+.......+.++..+++...+..
T Consensus 2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~-i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~ 80 (415)
T PF12460_consen 2 PALLALLPDSDSSTDSNYERILEALAALSTSPQ-ILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQF 80 (415)
T ss_pred chHHhhCCCCCCcchhHHHHHHHHHHHHHCChh-HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhccccccc
Confidence 556666655443 455677888888874432 22233445555555555443466677788888888876553332
Q ss_pred -hHHHHHh--hHHHHHHHHHHHhhcCC---HHHHHHHHHHHHHHhcCcc-cchhhhHHHHHHHHHH-----hhcCCCC-C
Q 004960 196 -EVVKFRE--FIPSILNVSRQCLASGE---EDVAVIAFEIFDELIESPA-PLLGDSVKSIVHFSLE-----VSSSHNL-E 262 (721)
Q Consensus 196 -~~~~~~~--~l~~ll~~l~~~l~~~~---~~~~~~a~~~l~~l~~~~~-~~~~~~~~~l~~~~~~-----~~~~~~~-~ 262 (721)
+...+.+ ++|.+++........+. +.+...+...+..++...+ ..-...+..+...+.. .+..... .
T Consensus 81 ~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~ 160 (415)
T PF12460_consen 81 EDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTI 160 (415)
T ss_pred chHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCcccccc
Confidence 2233333 78888876654433222 3444445555555544432 2222333344443330 0000000 0
Q ss_pred hHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcC-ccccHhHHHH
Q 004960 263 PNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA-KHVFPPVFEF 341 (721)
Q Consensus 263 ~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~i~~~ 341 (721)
.......+.++..+...-+....- +....++..++.+..... +...+..+..++..+.+..+ ++.+..+++.
T Consensus 161 ~~~~~~~~~l~~~il~~l~~~~~~-~~~~~ll~~l~~~~~~~~------~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~ 233 (415)
T PF12460_consen 161 SEQQSRLVILFSAILCSLRKDVSL-PDLEELLQSLLNLALSSE------DEFSRLAALQLLASLVNKWPDDDDLDEFLDS 233 (415)
T ss_pred ccccccHHHHHHHHHHcCCcccCc-cCHHHHHHHHHHHHHcCC------ChHHHHHHHHHHHHHHcCCCChhhHHHHHHH
Confidence 111223333333333322222110 124456667777665544 15678888899999999876 3456666666
Q ss_pred HHhhh-cCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHH--------
Q 004960 342 ASVSC-QNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPE-------- 412 (721)
Q Consensus 342 l~~~l-~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-------- 412 (721)
+.... .......|..++..+.++..+.--...+....++..++..+.| +.+...++.+++.+....+.-
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~ 311 (415)
T PF12460_consen 234 LLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHAN 311 (415)
T ss_pred HHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccch
Confidence 66555 4556677888888888888775433334455677778888877 678888999999887663211
Q ss_pred -----HHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhc-cccchHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 004960 413 -----IVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEE-ILPFLDPLMGKLLAALENSPRNLQETCMSAIGS 486 (721)
Q Consensus 413 -----~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~-~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~ 486 (721)
-++++..++|.+++..++.+...+.+...||..+++..+.. +.++++.+++.+.+.+..++..++..+++++..
T Consensus 312 vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~ 391 (415)
T PF12460_consen 312 VKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKM 391 (415)
T ss_pred hhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 24678999999999999887779999999999999999754 568999999999999999999999999999999
Q ss_pred HHHHhhhcchhhHHHHHHHHHH
Q 004960 487 VAAAAEQAFIPYAERVLELLKI 508 (721)
Q Consensus 487 l~~~~~~~~~~~~~~i~~~l~~ 508 (721)
+....++.+.+|++.++|.+.+
T Consensus 392 ~l~~~~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 392 ILEEAPELISEHLSSLIPRLLK 413 (415)
T ss_pred HHHcCHHHHHHHHHHHHHHHHh
Confidence 9998888889999999998765
No 52
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.35 E-value=7.2e-07 Score=96.08 Aligned_cols=375 Identities=10% Similarity=0.153 Sum_probs=233.1
Q ss_pred HHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCc---------ccchhhhHHHHHHHHHHhhcCCC----CChHHH
Q 004960 200 FREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESP---------APLLGDSVKSIVHFSLEVSSSHN----LEPNTR 266 (721)
Q Consensus 200 ~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~---------~~~~~~~~~~l~~~~~~~~~~~~----~~~~~r 266 (721)
|..+.|.+... +. ..++.+...|..|..+++.+ -.++...-..+++.++....... .....|
T Consensus 516 F~~la~~l~~a----l~-~~~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~ 590 (1176)
T KOG1248|consen 516 FTDLAPILGAA----LL-KRPELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASR 590 (1176)
T ss_pred HHHHHHHHHHH----Hh-cchHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHH
Confidence 56666655553 33 35688888888888888764 12334444555555555443321 112223
Q ss_pred HHHHHHHH-HHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHH---cCccccHhHHHHH
Q 004960 267 HQAIQIIS-WLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALN---LAKHVFPPVFEFA 342 (721)
Q Consensus 267 ~~a~~~l~-~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~---~~~~~~~~i~~~l 342 (721)
..-++.+. ......+. +....+.+.+-......+ +..........|+.++.. .....+..++...
T Consensus 591 ~~~L~~i~~~~~~~t~~-----dv~~~l~~s~~e~as~~~------~s~~~~~~~slLdl~~~~a~~~~e~~vs~l~~v~ 659 (1176)
T KOG1248|consen 591 STVLEIIRVDYFTVTPT-----DVVGSLKDSAGELASDLD------ESVASFKTLSLLDLLIALAPVQTESQVSKLFTVD 659 (1176)
T ss_pred HHHHHHHHHHHhhcccH-----HHHHHHHHHHHhHhccch------hhhhhHHHHHHHHHHHhhhccccchhHHHHHHhh
Confidence 32222222 11111111 111122222222222211 111122233444444332 2233333444333
Q ss_pred HhhhcCCChhhHhHHHHHHHHHhhc--cHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhH
Q 004960 343 SVSCQNASPKYREAAVTAIGIISEG--CAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESV 420 (721)
Q Consensus 343 ~~~l~~~~~~~r~~al~~l~~i~~~--~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 420 (721)
....++.+...+.-+...+..+... .......+++.+...+.+.+++.....|...+.|+..+.+..+.+........
T Consensus 660 ~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~ 739 (1176)
T KOG1248|consen 660 PEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKL 739 (1176)
T ss_pred HHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 3344555778888888888888877 34566677889999999999999999999999999999999886666777777
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHHH--Hhhhh-cccc---chHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhc
Q 004960 421 LPCILNALEDESDEVKEKSYYALAAFC--EDMGE-EILP---FLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQA 494 (721)
Q Consensus 421 l~~l~~~l~~~~~~v~~~a~~al~~l~--~~~~~-~~~~---~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~~ 494 (721)
++.++=.+++.+...|..+..+|..+. ...-. .-.| -+..++..|...+......+...-+-+++.+....++.
T Consensus 740 I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ 819 (1176)
T KOG1248|consen 740 IPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNI 819 (1176)
T ss_pred HHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhcc
Confidence 777776668777788888888888887 33311 1112 23333333333333334444444467777777776654
Q ss_pred ch-hhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCChhhHHHHHHHHHHH
Q 004960 495 FI-PYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNI 573 (721)
Q Consensus 495 ~~-~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l 573 (721)
.. .+++.++..+..++.. ....++..|+.++..+...+....+.+|.+.+++.++...++....+|..+...+..+
T Consensus 820 ld~~~l~~li~~V~~~L~s---~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekL 896 (1176)
T KOG1248|consen 820 LDDETLEKLISMVCLYLAS---NSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKL 896 (1176)
T ss_pred ccHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 43 5777788877777754 3446778899999999988877789999999999999977777899999999999999
Q ss_pred HHHccc-CcccchhhhHHHHH
Q 004960 574 AGVLED-GFAQYLPLVVPLAF 593 (721)
Q Consensus 574 ~~~~~~-~~~~~l~~i~~~ll 593 (721)
+..+|. .+.+|+|...--++
T Consensus 897 irkfg~~eLe~~~pee~~klL 917 (1176)
T KOG1248|consen 897 IRKFGAEELESFLPEEDMKLL 917 (1176)
T ss_pred HHHhCHHHHHhhCHHHHHHHH
Confidence 999996 45666665443333
No 53
>PRK09687 putative lyase; Provisional
Probab=99.35 E-value=4.3e-10 Score=107.36 Aligned_cols=254 Identities=15% Similarity=0.114 Sum_probs=180.4
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHH
Q 004960 120 LPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVK 199 (721)
Q Consensus 120 l~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 199 (721)
++.|.+.+.+++..+|..+...|+.+-. +.+++.+..++++ +++.+|..+.++|+.+-.....
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~-~d~~vR~~A~~aLg~lg~~~~~------ 87 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRGG----------QDVFRLAIELCSS-KNPIERDIGADILSQLGMAKRC------ 87 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCc----------chHHHHHHHHHhC-CCHHHHHHHHHHHHhcCCCccc------
Confidence 5677777889999999999999887641 5667777788888 8999999999999986432110
Q ss_pred HHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 004960 200 FREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKY 279 (721)
Q Consensus 200 ~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~ 279 (721)
....++.+... ...++++.++..|+..|+.+........ +.++..+.....++ +..+|..++..|+.+.
T Consensus 88 ~~~a~~~L~~l---~~~D~d~~VR~~A~~aLG~~~~~~~~~~----~~a~~~l~~~~~D~--~~~VR~~a~~aLg~~~-- 156 (280)
T PRK09687 88 QDNVFNILNNL---ALEDKSACVRASAINATGHRCKKNPLYS----PKIVEQSQITAFDK--STNVRFAVAFALSVIN-- 156 (280)
T ss_pred hHHHHHHHHHH---HhcCCCHHHHHHHHHHHhcccccccccc----hHHHHHHHHHhhCC--CHHHHHHHHHHHhccC--
Confidence 12234444432 2567889999999999999865433222 22333333333344 6789999888775433
Q ss_pred hHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcCccccHhHHHHHHhhhcCCChhhHhHHHH
Q 004960 280 KYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVT 359 (721)
Q Consensus 280 ~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~al~ 359 (721)
-+..++.+++.+.+.+ +.+|..|..+|+.+. . --+.+.+.+...+.+.++.+|..|+.
T Consensus 157 ----------~~~ai~~L~~~L~d~~-------~~VR~~A~~aLg~~~--~---~~~~~~~~L~~~L~D~~~~VR~~A~~ 214 (280)
T PRK09687 157 ----------DEAAIPLLINLLKDPN-------GDVRNWAAFALNSNK--Y---DNPDIREAFVAMLQDKNEEIRIEAII 214 (280)
T ss_pred ----------CHHHHHHHHHHhcCCC-------HHHHHHHHHHHhcCC--C---CCHHHHHHHHHHhcCCChHHHHHHHH
Confidence 1245556667776443 678888888888762 1 12456777777789999999999999
Q ss_pred HHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhcc-CCChHHHHH
Q 004960 360 AIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALE-DESDEVKEK 438 (721)
Q Consensus 360 ~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~-~~~~~v~~~ 438 (721)
++|.+.. +..+|.|++.+++++ +|..++.+||.+... ..+|.|.+.+. +++..|+..
T Consensus 215 aLg~~~~----------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~----------~a~p~L~~l~~~~~d~~v~~~ 272 (280)
T PRK09687 215 GLALRKD----------KRVLSVLIKELKKGT--VGDLIIEAAGELGDK----------TLLPVLDTLLYKFDDNEIITK 272 (280)
T ss_pred HHHccCC----------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH----------hHHHHHHHHHhhCCChhHHHH
Confidence 9998754 267888888998866 677888898887653 56777777776 678889999
Q ss_pred HHHHHHH
Q 004960 439 SYYALAA 445 (721)
Q Consensus 439 a~~al~~ 445 (721)
+.+++..
T Consensus 273 a~~a~~~ 279 (280)
T PRK09687 273 AIDKLKR 279 (280)
T ss_pred HHHHHhc
Confidence 9888764
No 54
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.35 E-value=4.7e-10 Score=126.37 Aligned_cols=274 Identities=20% Similarity=0.220 Sum_probs=192.6
Q ss_pred hHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHH
Q 004960 119 LLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVV 198 (721)
Q Consensus 119 ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~ 198 (721)
-++.|.+.+.++++.+|..|+..|+.+- -+..++.|...|.| +++.||..|+.+|..+.+..+.
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~----------~~~~~~~L~~aL~D-~d~~VR~~Aa~aL~~l~~~~~~----- 685 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETT----------PPGFGPALVAALGD-GAAAVRRAAAEGLRELVEVLPP----- 685 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhc----------chhHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhccCc-----
Confidence 3567788888999999999999998764 24567777888888 8999999999998877543321
Q ss_pred HHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 004960 199 KFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAK 278 (721)
Q Consensus 199 ~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~ 278 (721)
.+.+.. .++++++.++..++..|..+....+ .. ++..+.++ +..+|..|+..|..+-.
T Consensus 686 -----~~~L~~----~L~~~d~~VR~~A~~aL~~~~~~~~-------~~----l~~~L~D~--d~~VR~~Av~aL~~~~~ 743 (897)
T PRK13800 686 -----APALRD----HLGSPDPVVRAAALDVLRALRAGDA-------AL----FAAALGDP--DHRVRIEAVRALVSVDD 743 (897)
T ss_pred -----hHHHHH----HhcCCCHHHHHHHHHHHHhhccCCH-------HH----HHHHhcCC--CHHHHHHHHHHHhcccC
Confidence 112222 4566888999999988887643211 11 22334444 67899888877665421
Q ss_pred HhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcCccccHhHHHHHHhhhcCCChhhHhHHH
Q 004960 279 YKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAV 358 (721)
Q Consensus 279 ~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~al 358 (721)
.+. +...+.+ ++..+|..+...|..+...-. ..++.+...++++++..|.+++
T Consensus 744 -----------~~~----l~~~l~D-------~~~~VR~~aa~aL~~~~~~~~-----~~~~~L~~ll~D~d~~VR~aA~ 796 (897)
T PRK13800 744 -----------VES----VAGAATD-------ENREVRIAVAKGLATLGAGGA-----PAGDAVRALTGDPDPLVRAAAL 796 (897)
T ss_pred -----------cHH----HHHHhcC-------CCHHHHHHHHHHHHHhccccc-----hhHHHHHHHhcCCCHHHHHHHH
Confidence 111 2233332 236788888887777654222 2255566778889999999999
Q ss_pred HHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHH
Q 004960 359 TAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEK 438 (721)
Q Consensus 359 ~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~ 438 (721)
.+|+.+... +.+.+.+...+.|+++.||..|+++|+.+.. +..++.|...|.|++..||..
T Consensus 797 ~aLg~~g~~---------~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~----------~~a~~~L~~~L~D~~~~VR~~ 857 (897)
T PRK13800 797 AALAELGCP---------PDDVAAATAALRASAWQVRQGAARALAGAAA----------DVAVPALVEALTDPHLDVRKA 857 (897)
T ss_pred HHHHhcCCc---------chhHHHHHHHhcCCChHHHHHHHHHHHhccc----------cchHHHHHHHhcCCCHHHHHH
Confidence 999888643 1223457778899999999999999987642 245678888889999999999
Q ss_pred HHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCChhHHHHHHHHHH
Q 004960 439 SYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIG 485 (721)
Q Consensus 439 a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~ 485 (721)
|..+|+.+ .--+...+.|.+.+++.+..||..+..+|.
T Consensus 858 A~~aL~~~---------~~~~~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 858 AVLALTRW---------PGDPAARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HHHHHhcc---------CCCHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 99999886 111245666778888999999999988875
No 55
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.34 E-value=3.5e-10 Score=127.36 Aligned_cols=273 Identities=19% Similarity=0.201 Sum_probs=194.7
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccccHHHH
Q 004960 81 QSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADM 160 (721)
Q Consensus 81 ~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~l 160 (721)
+.|++.|. ++++.||..++..++.+.. +..++.|.+.++++++.+|..++..|+.+.+..+.
T Consensus 624 ~~L~~~L~-D~d~~VR~~Av~~L~~~~~--------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~--------- 685 (897)
T PRK13800 624 AELAPYLA-DPDPGVRRTAVAVLTETTP--------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP--------- 685 (897)
T ss_pred HHHHHHhc-CCCHHHHHHHHHHHhhhcc--------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc---------
Confidence 35566665 6899999999999997642 45789999999999999999999999888643321
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcccc
Q 004960 161 QALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPL 240 (721)
Q Consensus 161 ~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~ 240 (721)
.+.+...|++ +++.||.+++.+|..+-.. + ...++ ..+.++++.+|..|+..|..+-..
T Consensus 686 ~~~L~~~L~~-~d~~VR~~A~~aL~~~~~~--~----------~~~l~----~~L~D~d~~VR~~Av~aL~~~~~~---- 744 (897)
T PRK13800 686 APALRDHLGS-PDPVVRAAALDVLRALRAG--D----------AALFA----AALGDPDHRVRIEAVRALVSVDDV---- 744 (897)
T ss_pred hHHHHHHhcC-CCHHHHHHHHHHHHhhccC--C----------HHHHH----HHhcCCCHHHHHHHHHHHhcccCc----
Confidence 1355667788 8999999999998875311 1 01122 367889999999999999875321
Q ss_pred hhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHH
Q 004960 241 LGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAA 320 (721)
Q Consensus 241 ~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~ 320 (721)
+.+ ...+.++ +..+|..+...|..+....+ ..++.+..++.+. +..+|.+|.
T Consensus 745 -----~~l----~~~l~D~--~~~VR~~aa~aL~~~~~~~~----------~~~~~L~~ll~D~-------d~~VR~aA~ 796 (897)
T PRK13800 745 -----ESV----AGAATDE--NREVRIAVAKGLATLGAGGA----------PAGDAVRALTGDP-------DPLVRAAAL 796 (897)
T ss_pred -----HHH----HHHhcCC--CHHHHHHHHHHHHHhccccc----------hhHHHHHHHhcCC-------CHHHHHHHH
Confidence 112 2233344 78899999988777653211 1123344444432 267788877
Q ss_pred HHHHHHHHHcCccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHH
Q 004960 321 EVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASF 400 (721)
Q Consensus 321 ~~l~~l~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~ 400 (721)
..|..+.. + +.+.+.+...+.+++|.+|.+|+.+++.+.. +..++.|.+.++|+++.||..|.+
T Consensus 797 ~aLg~~g~---~---~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~----------~~a~~~L~~~L~D~~~~VR~~A~~ 860 (897)
T PRK13800 797 AALAELGC---P---PDDVAAATAALRASAWQVRQGAARALAGAAA----------DVAVPALVEALTDPHLDVRKAAVL 860 (897)
T ss_pred HHHHhcCC---c---chhHHHHHHHhcCCChHHHHHHHHHHHhccc----------cchHHHHHHHhcCCCHHHHHHHHH
Confidence 77766532 1 2234556677889999999999999987753 244578888999999999999999
Q ss_pred HHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHH
Q 004960 401 ALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAA 445 (721)
Q Consensus 401 ~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~ 445 (721)
+|+.+. .. +...+.|.+.+.|++..||..|..+|..
T Consensus 861 aL~~~~--~~-------~~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 861 ALTRWP--GD-------PAARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHhccC--CC-------HHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 999861 11 2456677788899999999999999863
No 56
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=9.5e-08 Score=98.13 Aligned_cols=452 Identities=15% Similarity=0.146 Sum_probs=257.5
Q ss_pred HHHHHHhcCC--ChhHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHccccCCCCC
Q 004960 39 ALVQHLRTAK--TPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEW 116 (721)
Q Consensus 39 ~l~~il~~~~--~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~ 116 (721)
.+++++.++. +..+=..|+.+|-.. ..+..--+-+.+-+-|.+ ++..+.-.+--+++.|+..+ --
T Consensus 74 eclKLias~~f~dKRiGYLaamLlLdE--------~qdvllLltNslknDL~s-~nq~vVglAL~alg~i~s~E----ma 140 (866)
T KOG1062|consen 74 ECLKLIASDNFLDKRIGYLAAMLLLDE--------RQDLLLLLTNSLKNDLNS-SNQYVVGLALCALGNICSPE----MA 140 (866)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHhcc--------chHHHHHHHHHHHhhccC-CCeeehHHHHHHhhccCCHH----Hh
Confidence 3556555543 333344555544221 234444455555555554 56666655556666666532 57
Q ss_pred cchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhh
Q 004960 117 PDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAE 196 (721)
Q Consensus 117 ~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~ 196 (721)
+++.|.+.++++..++..|.-|..|...+....|+ ....+++...+.|.+ .+..|-.+++..+..+++..+ +.
T Consensus 141 rdlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~----l~e~f~~~~~~lL~e-k~hGVL~~~l~l~~e~c~~~~--~~ 213 (866)
T KOG1062|consen 141 RDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPD----LVEHFVIAFRKLLCE-KHHGVLIAGLHLITELCKISP--DA 213 (866)
T ss_pred HHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCch----HHHHhhHHHHHHHhh-cCCceeeeHHHHHHHHHhcCH--HH
Confidence 89999999999999999999999999999877664 345666777888888 888999999999988888754 34
Q ss_pred HHHHHhhHHHHHHHHHHHhhcC-----------CHHHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHhhcCCCCChHH
Q 004960 197 VVKFREFIPSILNVSRQCLASG-----------EEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNT 265 (721)
Q Consensus 197 ~~~~~~~l~~ll~~l~~~l~~~-----------~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 265 (721)
...++.+.+.++..+.+....+ +|=.+..+++.|.-+.. . +.+.
T Consensus 214 l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq-----------------------~--d~da 268 (866)
T KOG1062|consen 214 LSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQ-----------------------N--DADA 268 (866)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcC-----------------------C--CccH
Confidence 6677888999988887765432 22223333333333322 2 1222
Q ss_pred HHHHHHHHHHHHHHhHhhhhhcCChHHHH-HHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcCccccHhHHHHHHh
Q 004960 266 RHQAIQIISWLAKYKYNSLKKHKLVIPIL-QVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASV 344 (721)
Q Consensus 266 r~~a~~~l~~l~~~~~~~~~~~~~~~~il-~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~i~~~l~~ 344 (721)
...--++|..++.+.... + ..-.-|+ +.+...+. .. .+...|..| ++.+.+
T Consensus 269 Sd~M~DiLaqvatntdss--k-N~GnAILYE~V~TI~~-I~-----~~~~Lrvla-------------------iniLgk 320 (866)
T KOG1062|consen 269 SDLMNDILAQVATNTDSS--K-NAGNAILYECVRTIMD-IR-----SNSGLRVLA-------------------INILGK 320 (866)
T ss_pred HHHHHHHHHHHHhccccc--c-cchhHHHHHHHHHHHh-cc-----CCchHHHHH-------------------HHHHHH
Confidence 222223333333321110 0 0001111 11111111 00 012233333 334445
Q ss_pred hhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHH
Q 004960 345 SCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCI 424 (721)
Q Consensus 345 ~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l 424 (721)
++.+++...|+.|+.++......-+..+..+ =..+++||+|+++.+|..|+..+-.+...- .+..++..+
T Consensus 321 FL~n~d~NirYvaLn~L~r~V~~d~~avqrH----r~tIleCL~DpD~SIkrralELs~~lvn~~------Nv~~mv~eL 390 (866)
T KOG1062|consen 321 FLLNRDNNIRYVALNMLLRVVQQDPTAVQRH----RSTILECLKDPDVSIKRRALELSYALVNES------NVRVMVKEL 390 (866)
T ss_pred HhcCCccceeeeehhhHHhhhcCCcHHHHHH----HHHHHHHhcCCcHHHHHHHHHHHHHHhccc------cHHHHHHHH
Confidence 6777888899999999999998766655554 346778999999999999999988777652 345677777
Q ss_pred HHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhcchhh-HHHHH
Q 004960 425 LNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPY-AERVL 503 (721)
Q Consensus 425 ~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~~~~~~-~~~i~ 503 (721)
+..|...++..+..+..-+..+++.+.+.-.=|++. +.+++...-..|+..+...+-.++.........| ...++
T Consensus 391 l~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idt----ml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy 466 (866)
T KOG1062|consen 391 LEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDT----MLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLY 466 (866)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHH----HHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHH
Confidence 888887788899988888888887775433333433 4444555544566666555555554432222222 11122
Q ss_pred HHHHHH-HhccCchhhhhHHHHHHHHHHHHHh-hc---hh-hccCChHHHHHHHHhccC--CCChhhHHHHHHHHHHHHH
Q 004960 504 ELLKIF-MVLTNDEDLRSRARATELLGLVAES-VG---RA-RMEPILPPFVEAAISGFG--LEFSELREYTHGFFSNIAG 575 (721)
Q Consensus 504 ~~l~~~-l~~~~~~~~~~~~~~~~~l~~l~~~-~~---~~-~~~~~~~~i~~~l~~~l~--~~~~~~~~~~~~~l~~l~~ 575 (721)
..+... +...+. ..+...+..|+|.-+.- +. .+ .....-.+++..+...+. ..+..++.+++.++-.+..
T Consensus 467 ~a~~~~~~~~is~--e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSs 544 (866)
T KOG1062|consen 467 LALSEDTLLDISQ--EPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSS 544 (866)
T ss_pred HHHhhhhhhhhhh--hhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHh
Confidence 221111 111111 12234566777766521 11 11 111112334444433332 2246677777777766655
Q ss_pred Hccc
Q 004960 576 VLED 579 (721)
Q Consensus 576 ~~~~ 579 (721)
.++.
T Consensus 545 r~~s 548 (866)
T KOG1062|consen 545 RFHS 548 (866)
T ss_pred hccc
Confidence 5543
No 57
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=1.6e-07 Score=96.01 Aligned_cols=380 Identities=10% Similarity=0.097 Sum_probs=227.1
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccccHHHHHH
Q 004960 83 LIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQA 162 (721)
Q Consensus 83 ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~l~~ 162 (721)
|.+.|.+..+...+.++-.+++.||+.. .-..++|.......+.+.+++.....-|-+.++..++.-. --+.
T Consensus 40 L~~lLdSnkd~~KleAmKRIia~iA~G~----dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLAL----LSIn 111 (968)
T KOG1060|consen 40 LKQLLDSNKDSLKLEAMKRIIALIAKGK----DVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLAL----LSIN 111 (968)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhcCC----cHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCcee----eeHH
Confidence 4455566567777888888888888753 3567899999999999999988777777777766543211 1145
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcccchh
Q 004960 163 LLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLG 242 (721)
Q Consensus 163 ~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~ 242 (721)
.+++.|.| +|+.+|..|+..+..+- ...+.|.++-.+.++..|..+-+|+.|..++-.+....+..-.
T Consensus 112 tfQk~L~D-pN~LiRasALRvlSsIR-----------vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~ 179 (968)
T KOG1060|consen 112 TFQKALKD-PNQLIRASALRVLSSIR-----------VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKD 179 (968)
T ss_pred HHHhhhcC-CcHHHHHHHHHHHHhcc-----------hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHH
Confidence 67889999 99999999998876542 2346677788888898999999999999999998887765433
Q ss_pred hhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhc-----------CChHH--HHHHHHhhhc----cCC
Q 004960 243 DSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKH-----------KLVIP--ILQVMCPLLA----ESN 305 (721)
Q Consensus 243 ~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~-----------~~~~~--il~~l~~~l~----~~~ 305 (721)
.+..++.. ++.+. ++-+-..|+-.+..+|-..-+.+.++ +-..+ ++..+..+-. ++.
T Consensus 180 -qL~e~I~~---LLaD~--splVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~ 253 (968)
T KOG1060|consen 180 -QLEEVIKK---LLADR--SPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPT 253 (968)
T ss_pred -HHHHHHHH---HhcCC--CCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCcc
Confidence 23333333 33333 44555555555554442211111110 00001 1222222211 110
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHH-cC---ccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHH
Q 004960 306 EAGEDDDLAPDRAAAEVIDTMALN-LA---KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLH 381 (721)
Q Consensus 306 ~~~~~~~~~~~~~a~~~l~~l~~~-~~---~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~ 381 (721)
.++..-+.+.+.. ..-+..... .| +.-...+++.....+.|.+..+..+++.++..++... ....++.
T Consensus 254 ~~~~~~e~n~~~~--~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~------~~~~i~k 325 (968)
T KOG1060|consen 254 VVDSSLEDNGRSC--NLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN------QVTKIAK 325 (968)
T ss_pred ccccccccCcccc--cccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH------HHHHHHH
Confidence 0000000000000 000000000 01 1112335555566678888888888888888887642 2335566
Q ss_pred HHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHH------------------------------hhhhHHHHHHHhccCC
Q 004960 382 IVLGALRDPEQFVRGAASFALGQFAEYLQPEIVS------------------------------HYESVLPCILNALEDE 431 (721)
Q Consensus 382 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~------------------------------~~~~~l~~l~~~l~~~ 431 (721)
.++.+|.. ++.+++..+..+..++...+.-+.+ ....+++.+...+++.
T Consensus 326 aLvrLLrs-~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~ 404 (968)
T KOG1060|consen 326 ALVRLLRS-NREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSS 404 (968)
T ss_pred HHHHHHhc-CCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcC
Confidence 66666653 6667777777777776544322111 2344555555556666
Q ss_pred ChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhcchhhHHH
Q 004960 432 SDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAER 501 (721)
Q Consensus 432 ~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~~~~~~~~~ 501 (721)
+..+...+..||+.++...+ ..-+..++.|+.++.+.+..|..++...|..++..-+..-..++.+
T Consensus 405 d~~faa~aV~AiGrCA~~~~----sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~ii~~ 470 (968)
T KOG1060|consen 405 DRSFAAAAVKAIGRCASRIG----SVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLEILFQ 470 (968)
T ss_pred chhHHHHHHHHHHHHHHhhC----chhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHHHHHH
Confidence 66677788888888876654 3456788888888888888888888888888887765433333333
No 58
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=4.6e-10 Score=103.77 Aligned_cols=421 Identities=14% Similarity=0.100 Sum_probs=252.8
Q ss_pred CCcHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHH
Q 004960 129 SEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSIL 208 (721)
Q Consensus 129 ~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll 208 (721)
+++.+.+..+...+..+.+..- .....+....++-++++ .+..++.++..+++++.-..+...-+..+..+-+.+.
T Consensus 58 SDnlnlqrsaalafAeitek~v---r~Vsres~epvl~llqs-~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~ 133 (550)
T KOG4224|consen 58 SDNLNLQRSAALAFAEITEKGV---RRVSRESNEPVLALLQS-CDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLIL 133 (550)
T ss_pred ccccccchHHHHHHHHHHHHHH---HHhhhhhhhHHHHHHhC-cchhhhhhhhhhhccceeccCCceEEEeccChHHHHH
Confidence 4444444555566666654432 22345666667778888 8999999999999998766543322222222223333
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHh--hhhh
Q 004960 209 NVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYN--SLKK 286 (721)
Q Consensus 209 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~ 286 (721)
+ ++. +..+++..+..|+..++.......+-.-..-+..+..+...+ +..++.++...+.++...... .+..
T Consensus 134 q----mmt-d~vevqcnaVgCitnLaT~d~nk~kiA~sGaL~pltrLaksk--dirvqrnatgaLlnmThs~EnRr~LV~ 206 (550)
T KOG4224|consen 134 Q----MMT-DGVEVQCNAVGCITNLATFDSNKVKIARSGALEPLTRLAKSK--DIRVQRNATGALLNMTHSRENRRVLVH 206 (550)
T ss_pred H----hcC-CCcEEEeeehhhhhhhhccccchhhhhhccchhhhHhhcccc--hhhHHHHHHHHHHHhhhhhhhhhhhhc
Confidence 3 443 466778888888888877643322222122233344433333 677888888888776632211 1111
Q ss_pred cCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHH-----cCccccHhHHHHHHhhhcCCChhhHhHHHHHH
Q 004960 287 HKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALN-----LAKHVFPPVFEFASVSCQNASPKYREAAVTAI 361 (721)
Q Consensus 287 ~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~-----~~~~~~~~i~~~l~~~l~~~~~~~r~~al~~l 361 (721)
..-+++++.++...+ ..++..+..+++.++-. .-.+.-|.+++.+.+.+.+.+.+.+..|-.++
T Consensus 207 ----aG~lpvLVsll~s~d-------~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lAL 275 (550)
T KOG4224|consen 207 ----AGGLPVLVSLLKSGD-------LDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLAL 275 (550)
T ss_pred ----cCCchhhhhhhccCC-------hhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHH
Confidence 123445666666554 33444444445444322 11233467889999999999999999999999
Q ss_pred HHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCC-hHHHHHHH
Q 004960 362 GIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDES-DEVKEKSY 440 (721)
Q Consensus 362 ~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~-~~v~~~a~ 440 (721)
+.++........-.-..-+|.++++++++......+...|+.+++-+-..+..-.-.+++..|+..|.-.+ .+++.+|.
T Consensus 276 rnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAv 355 (550)
T KOG4224|consen 276 RNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAV 355 (550)
T ss_pred hhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHH
Confidence 99987543222211234568888888988877777888888888766443322223567788888887654 45999999
Q ss_pred HHHHHHHHhhhhccccchH-HHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhcchhhHHH--HHHHHHHHHhccCchh
Q 004960 441 YALAAFCEDMGEEILPFLD-PLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAER--VLELLKIFMVLTNDED 517 (721)
Q Consensus 441 ~al~~l~~~~~~~~~~~~~-~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~~~~~~~~~--i~~~l~~~l~~~~~~~ 517 (721)
..|.+++.+.......+.+ ..++.+..++-+..-++|+.+-.|++.++-. +.+..++-. ++|.|.... .+..
T Consensus 356 stLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~--d~~k~~lld~gi~~iLIp~t---~s~s 430 (550)
T KOG4224|consen 356 STLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALN--DNDKEALLDSGIIPILIPWT---GSES 430 (550)
T ss_pred HHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhc--cccHHHHhhcCCcceeeccc---Cccc
Confidence 9999999876544443333 6678888888899999999999998887643 333333322 444443332 3444
Q ss_pred hhhHHHHHHHHHHHHHhhch-----hhccCChHHHHHHHHhccCCCChhhHHHHHHHHHHHHHH
Q 004960 518 LRSRARATELLGLVAESVGR-----ARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGV 576 (721)
Q Consensus 518 ~~~~~~~~~~l~~l~~~~~~-----~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~ 576 (721)
.++|+.+.+++..++..+.. +....-...+-..+...+.+.+..++..+...+..+.+.
T Consensus 431 ~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~ 494 (550)
T KOG4224|consen 431 EEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLED 494 (550)
T ss_pred hhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 56777777777777644321 001111133333444444444555555555555555443
No 59
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=99.22 E-value=2.8e-09 Score=105.31 Aligned_cols=219 Identities=16% Similarity=0.166 Sum_probs=145.4
Q ss_pred HHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHhhcCCC---CChHHHHHHHHHHHHHHHHhHh--hhhhcCChHHHHH
Q 004960 221 DVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHN---LEPNTRHQAIQIISWLAKYKYN--SLKKHKLVIPILQ 295 (721)
Q Consensus 221 ~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~r~~a~~~l~~l~~~~~~--~~~~~~~~~~il~ 295 (721)
.++.++++++..+++.....+.++++.++...++.+..-. -.+.+-..++.+|..+++.... .+...+.+..+++
T Consensus 111 kvK~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Iie 190 (370)
T PF08506_consen 111 KVKAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQIIE 190 (370)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHHH
Confidence 4567788888888887777777888888777776654321 1244556788888887754321 1222234555654
Q ss_pred -HHHhhhccCCCCC----------------CCCCCcHHHHHHHHHHHHHHHcCccccHhHHHHHHhhhc------CCChh
Q 004960 296 -VMCPLLAESNEAG----------------EDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQ------NASPK 352 (721)
Q Consensus 296 -~l~~~l~~~~~~~----------------~~~~~~~~~~a~~~l~~l~~~~~~~~~~~i~~~l~~~l~------~~~~~ 352 (721)
.++|.|+-.++|+ ..|..++|++|.+++..+++..++.+.+.+..++...++ +.+|+
T Consensus 191 ~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~ 270 (370)
T PF08506_consen 191 KVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWR 270 (370)
T ss_dssp HTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HH
T ss_pred HhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHH
Confidence 5678877544321 134578899999999999999887777766666666554 56899
Q ss_pred hHhHHHHHHHHHhhccHH------------HHHHhHH-HHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhh
Q 004960 353 YREAAVTAIGIISEGCAE------------WMKEKLE-SVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYES 419 (721)
Q Consensus 353 ~r~~al~~l~~i~~~~~~------------~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 419 (721)
.+++|+.++++++..... .+..++. .++|-+. .-.+.+|.+|..|++.+..+-..+++ +.+.+
T Consensus 271 ~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~---~~l~~ 346 (370)
T PF08506_consen 271 SKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK---EQLLQ 346 (370)
T ss_dssp HHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H---HHHHH
T ss_pred HHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH---HHHHH
Confidence 999999999999865421 2223222 2334444 22356899999999999999988864 57889
Q ss_pred HHHHHHHhccCCChHHHHHHHHHH
Q 004960 420 VLPCILNALEDESDEVKEKSYYAL 443 (721)
Q Consensus 420 ~l~~l~~~l~~~~~~v~~~a~~al 443 (721)
++|.+++.|.+++.-|+..|+.++
T Consensus 347 ~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 347 IFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchhhhhhhhC
Confidence 999999999999988998888764
No 60
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=99.21 E-value=2.7e-10 Score=87.95 Aligned_cols=94 Identities=18% Similarity=0.277 Sum_probs=87.2
Q ss_pred hHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCC
Q 004960 353 YREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDES 432 (721)
Q Consensus 353 ~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~ 432 (721)
.|.+++.++++++.+++....++++.+++.++.++.|++++||+.||.+|.++++..+..+.+++.++++.+.+.+.|++
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 68999999999999999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred hHHHHHHHHHHHHHH
Q 004960 433 DEVKEKSYYALAAFC 447 (721)
Q Consensus 433 ~~v~~~a~~al~~l~ 447 (721)
+.||..| ..|.+++
T Consensus 82 ~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 82 ENVRSAA-ELLDRLL 95 (97)
T ss_pred hhHHHHH-HHHHHHh
Confidence 9999866 5555554
No 61
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=1.5e-06 Score=88.35 Aligned_cols=279 Identities=13% Similarity=0.140 Sum_probs=181.3
Q ss_pred hccCCcHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHH
Q 004960 126 FSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIP 205 (721)
Q Consensus 126 ~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~ 205 (721)
-++|++.-..-.|+.+|+.+... ....++.+-++.+|++ +.+-+|..|+..++++...+++. ++..+|
T Consensus 117 dl~S~n~ye~giAL~GLS~fvTp------dLARDLa~Dv~tLL~s-skpYvRKkAIl~lykvFLkYPeA-----lr~~Fp 184 (877)
T KOG1059|consen 117 DLNSSNVYEVGLALSGLSCIVTP------DLARDLADDVFTLLNS-SKPYVRKKAILLLYKVFLKYPEA-----LRPCFP 184 (877)
T ss_pred HhccCccchhhheecccccccCc------hhhHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHhhhHh-----HhhhHH
Confidence 34454443344666666666532 2346677777888888 89999999999999987665443 677888
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhh
Q 004960 206 SILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLK 285 (721)
Q Consensus 206 ~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~ 285 (721)
.+.+ -+.++|+.+..+|...+++++...|.-+-+..|.++..|... .++| +-...+.+++.+.-..|..-+
T Consensus 185 rL~E----kLeDpDp~V~SAAV~VICELArKnPknyL~LAP~ffkllttS-sNNW----mLIKiiKLF~aLtplEPRLgK 255 (877)
T KOG1059|consen 185 RLVE----KLEDPDPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTS-SNNW----VLIKLLKLFAALTPLEPRLGK 255 (877)
T ss_pred HHHH----hccCCCchHHHHHHHHHHHHHhhCCcccccccHHHHHHHhcc-CCCe----ehHHHHHHHhhccccCchhhh
Confidence 8888 678899999999999999999999876666667776665431 2222 345556666666654444332
Q ss_pred hcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHH-----cC--ccccHhHHHHHHhhhcCCChhhHhHHH
Q 004960 286 KHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALN-----LA--KHVFPPVFEFASVSCQNASPKYREAAV 358 (721)
Q Consensus 286 ~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~-----~~--~~~~~~i~~~l~~~l~~~~~~~r~~al 358 (721)
+ .++++.+ ++... ....-.-+|+.++... .+ ...+...++.+-.++.+++...|+-++
T Consensus 256 K--Lieplt~----li~sT---------~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgL 320 (877)
T KOG1059|consen 256 K--LIEPITE----LMEST---------VAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGL 320 (877)
T ss_pred h--hhhHHHH----HHHhh---------HHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHH
Confidence 2 2334333 22211 1111112333333221 21 123445677777788999999999999
Q ss_pred HHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCCh-HHHH
Q 004960 359 TAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESD-EVKE 437 (721)
Q Consensus 359 ~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~-~v~~ 437 (721)
.+++.++...++.+..+ -..++++|.|.++.||..|+..+-.+... +.+..++..|+..+...+. ..|.
T Consensus 321 lam~KI~ktHp~~Vqa~----kdlIlrcL~DkD~SIRlrALdLl~gmVsk------kNl~eIVk~LM~~~~~ae~t~yrd 390 (877)
T KOG1059|consen 321 LAMSKILKTHPKAVQAH----KDLILRCLDDKDESIRLRALDLLYGMVSK------KNLMEIVKTLMKHVEKAEGTNYRD 390 (877)
T ss_pred HHHHHHhhhCHHHHHHh----HHHHHHHhccCCchhHHHHHHHHHHHhhh------hhHHHHHHHHHHHHHhccchhHHH
Confidence 99999999888776655 34677899999999999999998877654 2344556666655554433 4565
Q ss_pred HHHHHHHHHHHhh
Q 004960 438 KSYYALAAFCEDM 450 (721)
Q Consensus 438 ~a~~al~~l~~~~ 450 (721)
..+.-+-.+|+..
T Consensus 391 ell~~II~iCS~s 403 (877)
T KOG1059|consen 391 ELLTRIISICSQS 403 (877)
T ss_pred HHHHHHHHHhhhh
Confidence 5555454454443
No 62
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1.2e-06 Score=93.34 Aligned_cols=497 Identities=14% Similarity=0.113 Sum_probs=276.0
Q ss_pred cCCChhHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccc-CCCCCcchHHHHH
Q 004960 46 TAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAV-PAGEWPDLLPFLF 124 (721)
Q Consensus 46 ~~~~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~-~~~~~~~ll~~l~ 124 (721)
++.+..+|+.||-.+.+...+ +|.+..+++....+..+.--.+...-..++-+++.+|...+ +....++++|.+.
T Consensus 351 ~d~dt~VrWSaAKg~grvt~r----lp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l~dVvplI~ 426 (1133)
T KOG1943|consen 351 SDTDTVVRWSAAKGLGRVTSR----LPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLLEDVVPLIL 426 (1133)
T ss_pred cCCcchhhHHHHHHHHHHHcc----CcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 356899999999988887654 57888888888888865522346777899999999997433 1135668888888
Q ss_pred Hhcc--------CCcHHHHHHHHHHHHHhhhhh-hhcccccHHHHHHH-HHHhhCCCCCHHHHHHHHHHHHHhhhhcCCh
Q 004960 125 QFSQ--------SEQEEHREVALILFSSLTETI-GQTFRPHFADMQAL-LLKCLQDETSNRVRIAALKAIGSFLEFTNDG 194 (721)
Q Consensus 125 ~~l~--------~~~~~~~~~al~~l~~i~~~~-~~~~~~~~~~l~~~-l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~ 194 (721)
..+. +....+|.+|+.++-.+.... +..+.+++..+.+. +..++-| +.-+.|.+|..++...+....+-
T Consensus 427 kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFD-revncRRAAsAAlqE~VGR~~n~ 505 (1133)
T KOG1943|consen 427 KALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFD-REVNCRRAASAALQENVGRQGNF 505 (1133)
T ss_pred HHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcC-chhhHhHHHHHHHHHHhccCCCC
Confidence 7774 234578999999998888765 55667777777654 4567778 89999999999988776653221
Q ss_pred hhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 004960 195 AEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIIS 274 (721)
Q Consensus 195 ~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~ 274 (721)
..-++ ++.. .+.-....+..++.-+...+...+.+..+.+.+++.. .+ ...+..+|..+...+.
T Consensus 506 ------p~Gi~-Lis~----~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~---Kv--~HWd~~irelaa~aL~ 569 (1133)
T KOG1943|consen 506 ------PHGIS-LIST----IDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTK---KV--CHWDVKIRELAAYALH 569 (1133)
T ss_pred ------CCchh-hhhh----cchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhc---cc--ccccHHHHHHHHHHHH
Confidence 00111 1110 0001223355666666666666666666666655542 01 1227889999999999
Q ss_pred HHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcC--ccc-------cHhHHHH-HHh
Q 004960 275 WLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA--KHV-------FPPVFEF-ASV 344 (721)
Q Consensus 275 ~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~--~~~-------~~~i~~~-l~~ 344 (721)
.+....|+.+.. .+++++++.. ...+ -+....+-.++.+.+..+-...+ ... .+.+++. +..
T Consensus 570 ~Ls~~~pk~~a~-~~L~~lld~~----ls~~---~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~ 641 (1133)
T KOG1943|consen 570 KLSLTEPKYLAD-YVLPPLLDST----LSKD---ASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDR 641 (1133)
T ss_pred HHHHhhHHhhcc-cchhhhhhhh----cCCC---hHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHH
Confidence 988887776542 2334433322 1111 00011122223333332222111 000 0111111 111
Q ss_pred hhcC-CChhhHhHHHHHHHHHhhccHHHHHHhH-HHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhh-hhHH
Q 004960 345 SCQN-ASPKYREAAVTAIGIISEGCAEWMKEKL-ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY-ESVL 421 (721)
Q Consensus 345 ~l~~-~~~~~r~~al~~l~~i~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~l 421 (721)
...- .....|.+.+..+..+...-.......+ +..-..+.+.+.+++ .+|.+|.++++.++...-. ..+.. ..++
T Consensus 642 ~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~-~d~~~~~~li 719 (1133)
T KOG1943|consen 642 YFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVK-ADEGEEAPLI 719 (1133)
T ss_pred HhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHh-cCchhhhHHH
Confidence 1110 1123344555556655544332222222 223334445556667 8999999999999875421 11222 2466
Q ss_pred HHHHHhccCC-ChHHHHHHHHHHHHHHHhhhhccc-cchHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHhh-hcchh
Q 004960 422 PCILNALEDE-SDEVKEKSYYALAAFCEDMGEEIL-PFLDPLMGKLLAALENS-PRNLQETCMSAIGSVAAAAE-QAFIP 497 (721)
Q Consensus 422 ~~l~~~l~~~-~~~v~~~a~~al~~l~~~~~~~~~-~~~~~i~~~l~~~l~~~-~~~v~~~~l~~l~~l~~~~~-~~~~~ 497 (721)
...+..+.+. +..+|.....+++.+.... +. ++-+.+...+....... ...-|...+.++..+....+ ..+..
T Consensus 720 ~~~ls~~~~~~~~~~r~g~~lal~~lp~~~---i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~ 796 (1133)
T KOG1943|consen 720 TRYLSRLTKCSEERIRRGLILALGVLPSEL---IHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSE 796 (1133)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHccCcHHh---hchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 7777777766 4556666555665554322 11 22333344444433333 45667778888888777666 23333
Q ss_pred hHHHHHHHHHHHHhcc---Cchh--hhhHHHHHHHHHHHHHhhc-hhhccCC-hHHHHHHHHhccCCCChhhHHHHHHHH
Q 004960 498 YAERVLELLKIFMVLT---NDED--LRSRARATELLGLVAESVG-RARMEPI-LPPFVEAAISGFGLEFSELREYTHGFF 570 (721)
Q Consensus 498 ~~~~i~~~l~~~l~~~---~~~~--~~~~~~~~~~l~~l~~~~~-~~~~~~~-~~~i~~~l~~~l~~~~~~~~~~~~~~l 570 (721)
-++++...|.+.+..- +..| .-+|..|+..+..+...+. ++.+.++ +..++..+++.--++-..+|+.+..++
T Consensus 797 ~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~~~~l~~p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~ 876 (1133)
T KOG1943|consen 797 SIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSLLDTLSSPKLLDEDSINRIIRYFVQQAVEKIDRLRELAASAL 876 (1133)
T ss_pred cHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhhhhhhcCcccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4444555555554321 1112 2468888888887765443 3333332 233333333322233344577777777
Q ss_pred HHHHHH
Q 004960 571 SNIAGV 576 (721)
Q Consensus 571 ~~l~~~ 576 (721)
..+...
T Consensus 877 ~qi~~~ 882 (1133)
T KOG1943|consen 877 NQIVVH 882 (1133)
T ss_pred hceeec
Confidence 776554
No 63
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=1e-07 Score=98.07 Aligned_cols=467 Identities=16% Similarity=0.159 Sum_probs=278.5
Q ss_pred HHHhcCCChHHHHHHHHHHHHHhc-CCCcHHHHHHHHhc---CCChhHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHHH
Q 004960 9 LIQFLMPDNDARRQAEDQIKRLAK-DPQVVPALVQHLRT---AKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLI 84 (721)
Q Consensus 9 l~~~~s~d~~~r~~A~~~L~~~~~-~p~~~~~l~~il~~---~~~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i~~~ll 84 (721)
+....-.|-+.++-...++..+.+ +|.-...+...+.. +.++.+|..|....... --+....++.+-+.
T Consensus 55 vk~~~T~dlelKKlvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l-------~v~~i~ey~~~Pl~ 127 (734)
T KOG1061|consen 55 VKCMQTRDLELKKLVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCL-------RVDKITEYLCDPLL 127 (734)
T ss_pred HhhcccCCchHHHHHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeE-------eehHHHHHHHHHHH
Confidence 333344455566666666655544 45433333333332 34677777765433221 12345566777777
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhh-cccccHHHHHHH
Q 004960 85 ESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQ-TFRPHFADMQAL 163 (721)
Q Consensus 85 ~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~-~~~~~~~~l~~~ 163 (721)
.++. +.++.+|+.++.+++.+...+.....-..+++.|..++.++++.+...|+.++..|.+..++ ........++..
T Consensus 128 ~~l~-d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~ 206 (734)
T KOG1061|consen 128 KCLK-DDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINK 206 (734)
T ss_pred Hhcc-CCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHH
Confidence 7777 57999999999999998775543234567899999999999999999999999999987764 333345666677
Q ss_pred HHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcccchhh
Q 004960 164 LLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGD 243 (721)
Q Consensus 164 l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~ 243 (721)
+++.++. -+.--+...+.++........ ..... +++.+...++..+..+...+.+.+..+......+...
T Consensus 207 lL~al~e-c~EW~qi~IL~~l~~y~p~d~-----~ea~~----i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~ 276 (734)
T KOG1061|consen 207 LLEALNE-CTEWGQIFILDCLAEYVPKDS-----REAED----ICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNEL 276 (734)
T ss_pred HHHHHHH-hhhhhHHHHHHHHHhcCCCCc-----hhHHH----HHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHH
Confidence 7777765 444444445555544433221 11222 3333333555567777777888888777665543344
Q ss_pred hHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHH
Q 004960 244 SVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVI 323 (721)
Q Consensus 244 ~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l 323 (721)
.+..+-+.++.+++.. +++.+.++.-+..+....|..++.. +....+... |-..+...-.+++
T Consensus 277 ~~~K~~~pl~tlls~~---~e~qyvaLrNi~lil~~~p~~~~~~---------~~~Ff~kyn-----DPiYvK~eKleil 339 (734)
T KOG1061|consen 277 LFKKVAPPLVTLLSSE---SEIQYVALRNINLILQKRPEILKVE---------IKVFFCKYN-----DPIYVKLEKLEIL 339 (734)
T ss_pred HHHHhcccceeeeccc---chhhHHHHhhHHHHHHhChHHHHhH---------hHeeeeecC-----CchhhHHHHHHHH
Confidence 4444444444444333 3667777776666665544432211 111112211 1233444444555
Q ss_pred HHHHHHcCccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHH
Q 004960 324 DTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALG 403 (721)
Q Consensus 324 ~~l~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~ 403 (721)
..++. +..+++++..+.++....+.+--..+++++|.++....+. ..+++.+++.+.-.-..|...+...+.
T Consensus 340 ~~la~---~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-----~~cv~~lLell~~~~~yvvqE~~vvi~ 411 (734)
T KOG1061|consen 340 IELAN---DANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----NDCVSILLELLETKVDYVVQEAIVVIR 411 (734)
T ss_pred HHHhh---HhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----hhhHHHHHHHHhhcccceeeehhHHHH
Confidence 55553 3345667777777777778888888999999998765443 567888888887554455556666666
Q ss_pred HHHhhhhHHHHHhhhhHHHHHHHhccCC-ChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCChhHHHHHHH
Q 004960 404 QFAEYLQPEIVSHYESVLPCILNALEDE-SDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMS 482 (721)
Q Consensus 404 ~l~~~~~~~~~~~~~~~l~~l~~~l~~~-~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~ 482 (721)
.+...++.. ++.+++.+...+.+- +++.|.+-.|.++...+..++ ...++..+.+-+.+....|+...+.
T Consensus 412 dilRkyP~~----~~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~-----a~elL~~f~en~~dE~~~Vql~LLt 482 (734)
T KOG1061|consen 412 DILRKYPNK----YESVVAILCENLDSLQEPEAKAALIWILGEYAERIEN-----ALELLESFLENFKDETAEVQLELLT 482 (734)
T ss_pred hhhhcCCCc----hhhhhhhhcccccccCChHHHHHHHHHHhhhhhccCc-----HHHHHHHHHhhcccchHHHHHHHHH
Confidence 666665532 244555555544432 467899999999988766644 3556666767777777788877777
Q ss_pred HHHHHHHHhhhcchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHH
Q 004960 483 AIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVA 532 (721)
Q Consensus 483 ~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~ 532 (721)
+.-.+.-..+..-...++.+++. ..+.. ++.++|.+++.....+.
T Consensus 483 a~ik~Fl~~p~~tq~~l~~vL~~---~~~d~--~~~dlrDr~l~Y~RlLs 527 (734)
T KOG1061|consen 483 AAIKLFLKKPTETQELLQGVLPL---ATADT--DNPDLRDRGLIYWRLLS 527 (734)
T ss_pred HHHHHHhcCCccHHHHHHHHHhh---hhccc--cChhhhhhHHHHHHHhh
Confidence 66655544443333333333332 22222 33456777776555554
No 64
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=7.3e-09 Score=96.00 Aligned_cols=445 Identities=14% Similarity=0.113 Sum_probs=260.7
Q ss_pred HHHHHHHHHHHHhcCC--CcH----HHHHHHHhcCCChhHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHHHHHHhhcCC
Q 004960 19 ARRQAEDQIKRLAKDP--QVV----PALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEHS 92 (721)
Q Consensus 19 ~r~~A~~~L~~~~~~p--~~~----~~l~~il~~~~~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i~~~ll~~l~~e~~ 92 (721)
.|......|+.+.... +|. .-.+.++.-+++.+.+..|++.+--.+.+.-..++.+..+. ++-.+. .++
T Consensus 24 erEav~~ll~~lEd~~~i~fyS~~plraltvL~ySDnlnlqrsaalafAeitek~vr~Vsres~ep----vl~llq-s~d 98 (550)
T KOG4224|consen 24 EREAVADLLNRLEDRNAISFYSASPLRALTVLKYSDNLNLQRSAALAFAEITEKGVRRVSRESNEP----VLALLQ-SCD 98 (550)
T ss_pred hHHHHHHHHHhhcccccccccCCCccchheeeeeccccccchHHHHHHHHHHHHHHHHhhhhhhhH----HHHHHh-Ccc
Confidence 4555566666665421 222 12233444445555555555544433333323344433333 233344 489
Q ss_pred HHHHHHHHHHHHHHHccccCCC---CCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhC
Q 004960 93 APVRRASANVVSIIAKYAVPAG---EWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQ 169 (721)
Q Consensus 93 ~~vr~~~~~~l~~i~~~~~~~~---~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~l~ 169 (721)
+.++..++.+++.++......+ ....+=+.+.+.+. ++...+..+..|+.+++........-.-..-+.++.++-+
T Consensus 99 ~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmt-d~vevqcnaVgCitnLaT~d~nk~kiA~sGaL~pltrLak 177 (550)
T KOG4224|consen 99 KCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMT-DGVEVQCNAVGCITNLATFDSNKVKIARSGALEPLTRLAK 177 (550)
T ss_pred hhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcC-CCcEEEeeehhhhhhhhccccchhhhhhccchhhhHhhcc
Confidence 9999999999998875432221 23344445666655 4556777889999988855322211112233455566555
Q ss_pred CCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCc--ccchhhhHHH
Q 004960 170 DETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESP--APLLGDSVKS 247 (721)
Q Consensus 170 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~--~~~~~~~~~~ 247 (721)
. .+..+|..+..+|.++....+... ......-+|.+++ .++.++.+++..|...++.++-.. .+.+.+.=|.
T Consensus 178 s-kdirvqrnatgaLlnmThs~EnRr-~LV~aG~lpvLVs----ll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~ 251 (550)
T KOG4224|consen 178 S-KDIRVQRNATGALLNMTHSRENRR-VLVHAGGLPVLVS----LLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPK 251 (550)
T ss_pred c-chhhHHHHHHHHHHHhhhhhhhhh-hhhccCCchhhhh----hhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccc
Confidence 5 788999999999888765443221 1112456777777 677789999999999999887543 2333333345
Q ss_pred HHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHh--hhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHH
Q 004960 248 IVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYN--SLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDT 325 (721)
Q Consensus 248 l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~ 325 (721)
+++.+.+++.+. +++++.+|-..+..++..... .+.... -++.++.++..+. ...--+...|+..
T Consensus 252 lv~~Lv~Lmd~~--s~kvkcqA~lALrnlasdt~Yq~eiv~ag----~lP~lv~Llqs~~-------~plilasVaCIrn 318 (550)
T KOG4224|consen 252 LVPALVDLMDDG--SDKVKCQAGLALRNLASDTEYQREIVEAG----SLPLLVELLQSPM-------GPLILASVACIRN 318 (550)
T ss_pred hHHHHHHHHhCC--ChHHHHHHHHHHhhhcccchhhhHHHhcC----CchHHHHHHhCcc-------hhHHHHHHHHHhh
Confidence 666666666555 678888888788877743211 111111 2334455553322 1222233455555
Q ss_pred HHHHcCccc--c-HhHHHHHHhhhc-CCChhhHhHHHHHHHHHhhccHHHHHHhH-HHHHHHHHhhcCCCCHhHHHHHHH
Q 004960 326 MALNLAKHV--F-PPVFEFASVSCQ-NASPKYREAAVTAIGIISEGCAEWMKEKL-ESVLHIVLGALRDPEQFVRGAASF 400 (721)
Q Consensus 326 l~~~~~~~~--~-~~i~~~l~~~l~-~~~~~~r~~al~~l~~i~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~vr~~a~~ 400 (721)
++-+-+... . .-++.-+...+. .++...+..|...+..++........... ...+|.+..++.|....||.....
T Consensus 319 isihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisa 398 (550)
T KOG4224|consen 319 ISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISA 398 (550)
T ss_pred cccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHH
Confidence 554333221 1 112333444444 34455788888888888765433333322 245788888888998999988888
Q ss_pred HHHHHHhhhhHHHHHhh--hhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhh------ccccchHHHHHHHHHhhcCC
Q 004960 401 ALGQFAEYLQPEIVSHY--ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGE------EILPFLDPLMGKLLAALENS 472 (721)
Q Consensus 401 ~l~~l~~~~~~~~~~~~--~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~------~~~~~~~~i~~~l~~~l~~~ 472 (721)
|+..++-.-. ...++ .+++|.|+....+.+.+||.+++.||.++.+.... ....-.+.+-..|.+.+.+.
T Consensus 399 c~a~Lal~d~--~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~S~ 476 (550)
T KOG4224|consen 399 CIAQLALNDN--DKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLARFLASH 476 (550)
T ss_pred HHHHHHhccc--cHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhh
Confidence 8888775522 23333 47899999999999999999999999999877632 12211245555666666665
Q ss_pred ChhHHHHHHHHHHHHHHH
Q 004960 473 PRNLQETCMSAIGSVAAA 490 (721)
Q Consensus 473 ~~~v~~~~l~~l~~l~~~ 490 (721)
+..++.-+.++|..+...
T Consensus 477 ~~tf~hia~wTI~qLle~ 494 (550)
T KOG4224|consen 477 ELTFRHIARWTIQQLLED 494 (550)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 555565555555555544
No 65
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=99.15 E-value=1.2e-07 Score=97.46 Aligned_cols=366 Identities=15% Similarity=0.176 Sum_probs=223.8
Q ss_pred HHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhh---hhcCChHH-HHHH
Q 004960 221 DVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSL---KKHKLVIP-ILQV 296 (721)
Q Consensus 221 ~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~---~~~~~~~~-il~~ 296 (721)
.....++..+..+.... ..+...++.++..+........ +.+.-..++..+..+.+...... ....|... +++.
T Consensus 17 ~~~~~~L~~l~~ls~~~-~i~~~~~~~ll~kl~~~~~~~~-~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~ 94 (415)
T PF12460_consen 17 SNYERILEALAALSTSP-QILETLSIRLLNKLSIVCQSES-SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPR 94 (415)
T ss_pred hHHHHHHHHHHHHHCCh-hHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHH
Confidence 44566666776666543 4455555666666555444333 44455566666666665432222 00112222 5555
Q ss_pred HHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcCcc----ccHhHHHHHHh-----hhc-CCC--hhhHhHHHHHHHHH
Q 004960 297 MCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKH----VFPPVFEFASV-----SCQ-NAS--PKYREAAVTAIGII 364 (721)
Q Consensus 297 l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~----~~~~i~~~l~~-----~l~-~~~--~~~r~~al~~l~~i 364 (721)
++...........+.+...-..+...+..+...++.+ ++..+...+.. .+. ... +......+..+..+
T Consensus 95 l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i 174 (415)
T PF12460_consen 95 LFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAI 174 (415)
T ss_pred HHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHHH
Confidence 5555544332222222344455566666666666632 33333333320 011 111 11223334444455
Q ss_pred hhccHHHH-HHhHHHHHHHHHhhc-CCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhc-cCCChHHHHHHHH
Q 004960 365 SEGCAEWM-KEKLESVLHIVLGAL-RDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNAL-EDESDEVKEKSYY 441 (721)
Q Consensus 365 ~~~~~~~~-~~~l~~i~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l-~~~~~~v~~~a~~ 441 (721)
..+.++.+ .+...+++..++... +..++..|..++++++.++..+++. +.+..++..+...+ .......+..+..
T Consensus 175 l~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~--~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 252 (415)
T PF12460_consen 175 LCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDD--DDLDEFLDSLLQSISSSEDSELRPQALE 252 (415)
T ss_pred HHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCh--hhHHHHHHHHHhhhcccCCcchhHHHHH
Confidence 55444322 234555666666554 4456999999999999999876432 24555566555555 3333445555555
Q ss_pred HHHHHHHhhhhccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhh--------cc-----hhhHHHHHHHHHH
Q 004960 442 ALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQ--------AF-----IPYAERVLELLKI 508 (721)
Q Consensus 442 al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~--------~~-----~~~~~~i~~~l~~ 508 (721)
.+.-+.+..=-.-.|....+++.+...+.+ +.+...+..+++.+....++ .. ..++..++|.+.+
T Consensus 253 ~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~ 330 (415)
T PF12460_consen 253 ILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLE 330 (415)
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHH
Confidence 555555554333346677788888888887 55677777888877655221 11 1357778888877
Q ss_pred HHhccCchhhhhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHcccCcccchhhh
Q 004960 509 FMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLV 588 (721)
Q Consensus 509 ~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i 588 (721)
.....++. .|...+.+++.+...+.++.+.++++.+++.+++.+..++++++.+++.++..+...-.+-+.+++..+
T Consensus 331 ~~~~~~~~---~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sL 407 (415)
T PF12460_consen 331 GFKEADDE---IKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSL 407 (415)
T ss_pred HHhhcChh---hHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 77654332 556678888999888888889999999999999999988999999999999999998888899999999
Q ss_pred HHHHHhh
Q 004960 589 VPLAFSS 595 (721)
Q Consensus 589 ~~~ll~~ 595 (721)
+|.+++.
T Consensus 408 I~~LL~l 414 (415)
T PF12460_consen 408 IPRLLKL 414 (415)
T ss_pred HHHHHhc
Confidence 9999864
No 66
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.11 E-value=5.4e-09 Score=98.63 Aligned_cols=193 Identities=18% Similarity=0.212 Sum_probs=137.7
Q ss_pred hHHHHHHhhhcCCChhhHhHHHHHHHHHhhcc-----HHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhH
Q 004960 337 PVFEFASVSCQNASPKYREAAVTAIGIISEGC-----AEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQP 411 (721)
Q Consensus 337 ~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~-----~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 411 (721)
.+...+...-.+.+|..|..++.-+..++.+. ...+.+.+..++..+...++|....|...|+.+++.++..++.
T Consensus 7 ~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~ 86 (228)
T PF12348_consen 7 EILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGS 86 (228)
T ss_dssp GS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH
Confidence 34444444456789999999999999998775 2344455666678888999999999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHH-HHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q 004960 412 EIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPL-MGKLLAALENSPRNLQETCMSAIGSVAAA 490 (721)
Q Consensus 412 ~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i-~~~l~~~l~~~~~~v~~~~l~~l~~l~~~ 490 (721)
.+.++.+.++|.|++.+.+.+..++..|..+|..++..++ +...+ ...+.....+.++.+|..++.++..++..
T Consensus 87 ~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~ 161 (228)
T PF12348_consen 87 HFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS-----YSPKILLEILSQGLKSKNPQVREECAEWLAIILEK 161 (228)
T ss_dssp GGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999999999999999998765 22344 66777778889999999999999999888
Q ss_pred hh---hcchh--hHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhch
Q 004960 491 AE---QAFIP--YAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGR 537 (721)
Q Consensus 491 ~~---~~~~~--~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~ 537 (721)
.+ ..+.. +++.+.+.+...+. |.+..+|..+-.++..+...+|.
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~l~~~l~---D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 162 WGSDSSVLQKSAFLKQLVKALVKLLS---DADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp -----GGG--HHHHHHHHHHHHHHHT---SS-HHHHHHHHHHHHHHHHHH-H
T ss_pred ccchHhhhcccchHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHHHHHCCH
Confidence 77 44433 35778888877774 45667898999999998877754
No 67
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.07 E-value=8.5e-08 Score=93.13 Aligned_cols=315 Identities=14% Similarity=0.090 Sum_probs=210.0
Q ss_pred ccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhH
Q 004960 332 KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQP 411 (721)
Q Consensus 332 ~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 411 (721)
+...+.++..+.....+..|+.|......+..+.....-.-.+.+.+++..+.....|++..+|..|+.+|++.+...+.
T Consensus 212 ~~~~~~il~q~~ss~ts~~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~ 291 (533)
T KOG2032|consen 212 DLEMGKILAQLLSSITSEKENGRITDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPD 291 (533)
T ss_pred CccHHHHHhhcccccchhcccchHHHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcH
Confidence 33445555555555667788889888888877765421111234567777777788899999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHhccCC-ChHHHHHHHHHHHHHHHhh-hhccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q 004960 412 EIVSHYESVLPCILNALEDE-SDEVKEKSYYALAAFCEDM-GEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAA 489 (721)
Q Consensus 412 ~~~~~~~~~l~~l~~~l~~~-~~~v~~~a~~al~~l~~~~-~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~ 489 (721)
+...|.+.++..++.+|-|+ +.+|...+..+|..+.+.. +.++.+|+-.+.-.+.+.+.+.+.++|.+++..++.++.
T Consensus 292 kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~ 371 (533)
T KOG2032|consen 292 KVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAK 371 (533)
T ss_pred HHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHH
Confidence 99999999999999998876 4678989999999888776 467889999999999999999999999999999999999
Q ss_pred HhhhcchhhH-HHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCChhhHHHHHH
Q 004960 490 AAEQAFIPYA-ERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHG 568 (721)
Q Consensus 490 ~~~~~~~~~~-~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ 568 (721)
..|.....++ +++...+..++-.-.++...+ ..+.....+.+++.....-...+++.. + +.+-. + +-.
T Consensus 372 l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~v----a~ACr~~~~~c~p~l~rke~~~~~q~~---l-d~~~~-~--~q~ 440 (533)
T KOG2032|consen 372 LAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYV----ARACRSELRTCYPNLVRKELYHLFQES---L-DTDMA-R--FQA 440 (533)
T ss_pred HcCCCchhhhHHHHHhccccceeeeCCCChHH----HHHHHHHHHhcCchhHHHHHHHHHhhh---h-HHhHH-H--HHH
Confidence 9998877654 444434444433223333322 122222222333211111111222211 1 11110 1 111
Q ss_pred HHHHHHHHcccCcccchhhhHHHHHhhccCCCCCccCCCCCccccccCCCCCCCCchhhhhccccceeeecchhhhHHHH
Q 004960 569 FFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAA 648 (721)
Q Consensus 569 ~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a 648 (721)
+....|. ...++.+.++-.++... .+-++++....|..|
T Consensus 441 Fyn~~c~----~L~~i~~d~l~~~~t~~-------------------------------------~~~f~sswe~vr~aa 479 (533)
T KOG2032|consen 441 FYNQWCI----QLNHIHPDILMLLLTED-------------------------------------QHIFSSSWEQVREAA 479 (533)
T ss_pred HHHHHHH----HHhhhCHHHHHHHHHhc-------------------------------------hhheecchHHHHHHH
Confidence 1111111 22334444444444211 011345555788888
Q ss_pred HHHHHHHHHHccccccchHH--HHHHHHHhcccCCChhHHHHHHHHHHHHHH
Q 004960 649 TQALGLFALHTKSSYAPFLE--ESLKILVRHASYFHEDVRYQAVFALKNILT 698 (721)
Q Consensus 649 ~~~l~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~ 698 (721)
...-+.+..+...+..+|.. ++...+..+..++-++|+..|.+++..+.+
T Consensus 480 vl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 480 VLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 88888889999888888754 677778888889999999999999998764
No 68
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.06 E-value=4.4e-09 Score=99.19 Aligned_cols=196 Identities=19% Similarity=0.284 Sum_probs=135.4
Q ss_pred hcCCCCHhHHHHHHHHHHHHHhhh-----hHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHH
Q 004960 386 ALRDPEQFVRGAASFALGQFAEYL-----QPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDP 460 (721)
Q Consensus 386 ~l~d~~~~vr~~a~~~l~~l~~~~-----~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~ 460 (721)
.-.+.++..|..|+.-|..++... .+.+...+..++..+...+.|....|...||.++..++...+..+.||++.
T Consensus 15 ~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~ 94 (228)
T PF12348_consen 15 KESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADI 94 (228)
T ss_dssp HHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred cCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Confidence 336789999999999999998776 233444566677888888888878899999999999999999999999999
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhcchhhHHHH-HHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhc--h
Q 004960 461 LMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERV-LELLKIFMVLTNDEDLRSRARATELLGLVAESVG--R 537 (721)
Q Consensus 461 i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~~~~~~~~~i-~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~--~ 537 (721)
+++.|++.+.+.+..+++.+..++..++...+ +.+.+ .+.+..... +....+|..+..++..+....+ .
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~---~Kn~~vR~~~~~~l~~~l~~~~~~~ 166 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCS-----YSPKILLEILSQGLK---SKNPQVREECAEWLAIILEKWGSDS 166 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT----S-HHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHHHHccchH
Confidence 99999999999999999999999999887654 22344 445544443 3456788899999999987776 2
Q ss_pred hhccCC--hHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHcccCcccchhhhH
Q 004960 538 ARMEPI--LPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVV 589 (721)
Q Consensus 538 ~~~~~~--~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~ 589 (721)
..+... ++.+.+.+...++|.++++|..+..++..+.+..|+.-...+..+-
T Consensus 167 ~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~~~~~~l~ 220 (228)
T PF12348_consen 167 SVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAESILSMLD 220 (228)
T ss_dssp GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH--------
T ss_pred hhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhccchhcch
Confidence 344433 4789999999999999999999999999999998876544443333
No 69
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=99.05 E-value=7.9e-06 Score=80.98 Aligned_cols=107 Identities=14% Similarity=0.175 Sum_probs=62.9
Q ss_pred HHHHHHHHHhhc--CCHHHHHHHHHHHHHHHc-cccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccc
Q 004960 79 VKQSLIESITLE--HSAPVRRASANVVSIIAK-YAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRP 155 (721)
Q Consensus 79 i~~~ll~~l~~e--~~~~vr~~~~~~l~~i~~-~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~ 155 (721)
+-+-..+.+.+. .....|+.+...+-.++. ..+|+..-..++-.+..++++.++..|+....++..+..-..+.
T Consensus 23 ~~qd~~~sfn~Spvs~r~~r~lls~l~yll~tge~f~e~~at~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~tedv--- 99 (898)
T COG5240 23 LLQDMNESFNKSPVSTRSARKLLSNLFYLLSTGELFPEATATNLFFAILKLFQHKDLYLRQCVYSAIKELSKLTEDV--- 99 (898)
T ss_pred HHHHHHHHhccCCCChHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhcchhh---
Confidence 333444455432 234566666666666654 34555556677888888999999999988777777765432221
Q ss_pred cHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhh
Q 004960 156 HFADMQALLLKCLQDETSNRVRIAALKAIGSFLEF 190 (721)
Q Consensus 156 ~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~ 190 (721)
--....+++-++......+|-.|++.|..++..
T Consensus 100 --lm~tssiMkD~~~g~~~~~kp~AiRsL~~Vid~ 132 (898)
T COG5240 100 --LMGTSSIMKDLNGGVPDDVKPMAIRSLFSVIDG 132 (898)
T ss_pred --hHHHHHHHHhhccCCccccccHHHHHHHHhcCc
Confidence 112233344444412336777788777766653
No 70
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=99.04 E-value=1.1e-09 Score=82.66 Aligned_cols=66 Identities=36% Similarity=0.606 Sum_probs=62.0
Q ss_pred HHHHHHHHhcC-CCcHHHHHHHHhcC-CChhHHHHHHHHHHHhhhhhhc--------CCCHHHHHHHHHHHHHHHh
Q 004960 23 AEDQIKRLAKD-PQVVPALVQHLRTA-KTPNVRQLAAVLLRKKITGHWA--------KLSPQLKQLVKQSLIESIT 88 (721)
Q Consensus 23 A~~~L~~~~~~-p~~~~~l~~il~~~-~~~~vr~~a~~~l~~~i~~~w~--------~~~~~~~~~i~~~ll~~l~ 88 (721)
||++|.++.++ |+|+..|++++.++ .++.+|++|+++|||.+.++|. .++++.+..||+.+++.|.
T Consensus 1 AE~~L~~~~~~~p~~~~~l~~il~~~~~~~~~R~~A~i~LKn~I~~~W~~~~~~~~~~~~~~~k~~Ik~~ll~~l~ 76 (77)
T PF03810_consen 1 AEQQLKQFQKQNPGFWQYLLQILSSNSQDPEVRQLAAILLKNLIKKNWSPSKQKGWSQLPEEEKEQIKSQLLQLLL 76 (77)
T ss_dssp HHHHHHHHHHSCTCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHSGGHHHHHHHHGSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcCchhhccCCCCCCHHHHHHHHHHHHHHHc
Confidence 78999999998 99999999999764 5999999999999999999999 9999999999999999886
No 71
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.01 E-value=9.7e-05 Score=80.31 Aligned_cols=615 Identities=13% Similarity=0.096 Sum_probs=315.5
Q ss_pred CCChHHHHHHHHHHHHHh--cC------CCcHHHHHHHHh--cCCChhHHHHHHHHHHHhhhhhhcCCCHHHHHHHH---
Q 004960 14 MPDNDARRQAEDQIKRLA--KD------PQVVPALVQHLR--TAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVK--- 80 (721)
Q Consensus 14 s~d~~~r~~A~~~L~~~~--~~------p~~~~~l~~il~--~~~~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i~--- 80 (721)
+.|..+++-+-..|..+. ++ ++..+.+..++. -+..|.+|..|...++..+...-.. ++...+.+.
T Consensus 106 stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~~~h~~pkvRk~a~~~i~~VL~~p~~~-~~~~HpA~~~va 184 (1176)
T KOG1248|consen 106 STNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAFAAHKKPKVRKAAQRGIAAVLKGPPFA-PDAEHPASLSVA 184 (1176)
T ss_pred cccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHcCCCCC-ccccchHHHHHH
Confidence 678889999988886543 22 334455555544 3678999999999998888753222 222222222
Q ss_pred HHHHHHHhhc----CCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhccccc
Q 004960 81 QSLIESITLE----HSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPH 156 (721)
Q Consensus 81 ~~ll~~l~~e----~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~ 156 (721)
...+..+.+. .+..+-+.+.- +..+.. .+|......+-..+...+...+...+..++.|+..++...+..+...
T Consensus 185 k~cl~~~e~~~~~a~~t~v~~~L~L-l~~~~~-~~p~~li~sl~e~lL~i~~~s~v~v~~~~~q~l~~lf~~~~~~l~a~ 262 (1176)
T KOG1248|consen 185 KFCLALIESKLGSAENTTVLRSLML-LRDVLS-TFPRPLIKSLCEVLLNITTESPVLVLLEVLQCLHSLFKKHPTALAAE 262 (1176)
T ss_pred HHHHHHHHhhhchHHHHHHHHHHHH-HHHhhc-cCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCCcchHH
Confidence 2223333221 12222222221 111121 13433344456666667777778889999999999998876643322
Q ss_pred H-HHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 004960 157 F-ADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIE 235 (721)
Q Consensus 157 ~-~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~ 235 (721)
. ..++..+...--+..+.....+-++++......... .+....-.-+|.++..+..+..+..+++...+.+++..+..
T Consensus 263 ~~a~lL~al~~l~ps~~D~~~t~~W~~v~~~~~~~la~-~q~~~~~~~~~~~~~~~~t~~~s~~~e~~q~a~q~l~~il~ 341 (1176)
T KOG1248|consen 263 LNARLLTALMTLSPSENDDLLTVAWLKVLNEAHDILAT-LQEEKALQALPRLFSLFFTILESLIEELVQAASQSLKEILK 341 (1176)
T ss_pred HHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHH-hCHHHHHHhhhhhhhHHHHHHhcccHHHHHHHHHHHHHHhc
Confidence 2 233444444433423444444444555433221111 11112234566677766666677788899999999999988
Q ss_pred CcccchhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcH
Q 004960 236 SPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAP 315 (721)
Q Consensus 236 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~ 315 (721)
......+......+..++.. . .-.+-..++.++..+.+..+... .+++.+.++.+..+=.. ++..-
T Consensus 342 ~sv~~~~~~c~~~~~~~l~~---k--f~~~~~~ilqi~s~~fek~G~~s--~~~l~~~L~~l~~lr~~-------~d~~~ 407 (1176)
T KOG1248|consen 342 ESVTVIDALCSKQLHSLLDY---K--FHAVWRFILQILSALFEKCGELS--GPELTKTLEGLCDLRAS-------PDFFH 407 (1176)
T ss_pred ccCcccHHHHHHHHHHHHcc---h--HHHHHHHHHHHHHHHHHHhhhhc--CHHHHHHHHHHHHhhcC-------CCCcc
Confidence 77663333222222222210 1 11122334445555554433311 12222333322221111 11223
Q ss_pred HHHHHHHHHHHHHHcCccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccH-HHHHHhHHHHHHHHHhh------cC
Q 004960 316 DRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCA-EWMKEKLESVLHIVLGA------LR 388 (721)
Q Consensus 316 ~~~a~~~l~~l~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~-~~~~~~l~~i~~~l~~~------l~ 388 (721)
+.....+++.....+|++.+-.++|.=. . .......-.|.|.-+-++.. ..+.-+.+.++|....+ +.
T Consensus 408 ~~~ld~~IGSAV~AmGPe~vL~~lpLnl---~--~~s~~~~RsWLLPvLR~~i~~A~La~F~~~ivpla~sl~~K~~~l~ 482 (1176)
T KOG1248|consen 408 KLQLDQCIGSAVRAMGPERVLTILPLNL---H--AESLSFTRSWLLPVLRDYIIGASLAFFTEYIVPLAMSLQLKAKKLK 482 (1176)
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHcchhc---c--ccccccchhHhHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3355567777777888655544444322 1 11122222333333332211 11111222333332222 12
Q ss_pred CC--CH-hHHHHHHHH---HHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhh---------hhc
Q 004960 389 DP--EQ-FVRGAASFA---LGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDM---------GEE 453 (721)
Q Consensus 389 d~--~~-~vr~~a~~~---l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~---------~~~ 453 (721)
.+ .+ .++.-..+. |..+|+. |.+....+..+.+.+...+.... +.|...|.+|..+++.. .+.
T Consensus 483 ~~~~~~~~~~tl~~QLW~LLP~FC~~-P~Dl~~sF~~la~~l~~al~~~~-elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~ 560 (1176)
T KOG1248|consen 483 EAGSQVSLYDTLVDQLWSLLPGFCNY-PVDLAESFTDLAPILGAALLKRP-ELRETICNSLRMLVEQNKPSSDAAENKEV 560 (1176)
T ss_pred hccCcHHHHHHHHHHHHHhChhhhCC-CccHHHHHHHHHHHHHHHHhcch-HhHHHHHHHHHHHHHcCCCcchHHHHHHH
Confidence 22 22 222222222 2333332 33455668888999988888764 89999999999999874 134
Q ss_pred cccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhh-hcchhhHHHHHHHHHHHHhc-cCchhhhh----HHHHHHH
Q 004960 454 ILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAE-QAFIPYAERVLELLKIFMVL-TNDEDLRS----RARATEL 527 (721)
Q Consensus 454 ~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~-~~~~~~~~~i~~~l~~~l~~-~~~~~~~~----~~~~~~~ 527 (721)
+..|....++.+++........-+ .++.+......... ..+..-..++...+...++. ..+.+..+ ....++.
T Consensus 561 ~s~~AknfL~~lfn~ytq~~~~~~-~~l~~~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl 639 (1176)
T KOG1248|consen 561 LSNDAKNFLPRLFNVYTQTVAAGR-KILASRSTVLEIIRVDYFTVTPTDVVGSLKDSAGELASDLDESVASFKTLSLLDL 639 (1176)
T ss_pred HhhhhhHHHHHHHHHhcCCCcccc-ccHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhHhccchhhhhhHHHHHHHHH
Confidence 556788899999988877543332 33333333322222 22222223333333333322 11221111 2223333
Q ss_pred HHHHHHhhchhhccCChHHHHHHHHhc-cCCCChhhHHHHHHHHHHHHHHcccCcccchhhhHHHHHhhccCCCCCccCC
Q 004960 528 LGLVAESVGRARMEPILPPFVEAAISG-FGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDI 606 (721)
Q Consensus 528 l~~l~~~~~~~~~~~~~~~i~~~l~~~-l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~ 606 (721)
+..++.... ...+..+. .+... .+..+..++..+...+..++.. .....+..+-+..+.+.+..
T Consensus 640 ~~~~a~~~~----e~~vs~l~-~v~~~~e~~~~~~vQkK~yrlL~~l~~~--~s~~~~~~q~i~~I~n~L~d-------- 704 (1176)
T KOG1248|consen 640 LIALAPVQT----ESQVSKLF-TVDPEFENSSSTKVQKKAYRLLEELSSS--PSGEGLVEQRIDDIFNSLLD-------- 704 (1176)
T ss_pred HHhhhcccc----chhHHHHH-HhhHHhhccccHHHHHHHHHHHHHHhcC--CchhhHHHHHHHHHHHHHHH--------
Confidence 333332221 11223333 22222 2334778888899999888775 22222233333333222210
Q ss_pred CCCccccccCCCCCCCCchhhhhccccceeeecchhhhHHHHHHHHHHHHHHccccccchHHHHHHHHHhcccCCChhHH
Q 004960 607 DGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVRHASYFHEDVR 686 (721)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr 686 (721)
++++..--.|..++.++..+...++..+..++++.++.++-.+++.+..-|
T Consensus 705 -----------------------------s~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR 755 (1176)
T KOG1248|consen 705 -----------------------------SFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKAR 755 (1176)
T ss_pred -----------------------------HHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHH
Confidence 012222346899999999999999977777788777777666788999999
Q ss_pred HHHHHHHHHHHH
Q 004960 687 YQAVFALKNILT 698 (721)
Q Consensus 687 ~~a~~~l~~l~~ 698 (721)
+.|..+|-.+.+
T Consensus 756 ~~Af~lL~~i~~ 767 (1176)
T KOG1248|consen 756 RNAFALLVFIGA 767 (1176)
T ss_pred hhHHHHHHHHHH
Confidence 999999988875
No 72
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=6.5e-05 Score=76.88 Aligned_cols=342 Identities=14% Similarity=0.133 Sum_probs=202.0
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhh
Q 004960 71 LSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIG 150 (721)
Q Consensus 71 ~~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~ 150 (721)
++++.-..+-+-++..|.+ +-+.+|..+.-++-.+.-.. |+ ....-+|.+.+.+.++|+.+..+|..++.+++...|
T Consensus 137 vTpdLARDLa~Dv~tLL~s-skpYvRKkAIl~lykvFLkY-Pe-Alr~~FprL~EkLeDpDp~V~SAAV~VICELArKnP 213 (877)
T KOG1059|consen 137 VTPDLARDLADDVFTLLNS-SKPYVRKKAILLLYKVFLKY-PE-ALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNP 213 (877)
T ss_pred cCchhhHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHhh-hH-hHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCC
Confidence 4566666777778888886 78999999988888877543 32 556678999999999999999999999999998877
Q ss_pred hcccccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 004960 151 QTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIF 230 (721)
Q Consensus 151 ~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l 230 (721)
..+. .+-|.+++++....|-=+-...++.++.+...-+.- -..++|++.+.+. +.......++|+
T Consensus 214 knyL----~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRL-----gKKLieplt~li~------sT~AmSLlYECv 278 (877)
T KOG1059|consen 214 QNYL----QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRL-----GKKLIEPITELME------STVAMSLLYECV 278 (877)
T ss_pred cccc----cccHHHHHHHhccCCCeehHHHHHHHhhccccCchh-----hhhhhhHHHHHHH------hhHHHHHHHHHH
Confidence 5443 455666777764344335556777778777664321 2457777777442 233445566677
Q ss_pred HHHhcC-----cccchhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCC
Q 004960 231 DELIES-----PAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESN 305 (721)
Q Consensus 231 ~~l~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~ 305 (721)
..++.. .+.... .+.-.++.+-..+.++ ++..++.++-+++.+.+..|..+..+ -+.++..|.+.|
T Consensus 279 NTVVa~s~s~g~~d~~a-siqLCvqKLr~fieds--DqNLKYlgLlam~KI~ktHp~~Vqa~------kdlIlrcL~DkD 349 (877)
T KOG1059|consen 279 NTVVAVSMSSGMSDHSA-SIQLCVQKLRIFIEDS--DQNLKYLGLLAMSKILKTHPKAVQAH------KDLILRCLDDKD 349 (877)
T ss_pred HHheeehhccCCCCcHH-HHHHHHHHHhhhhhcC--CccHHHHHHHHHHHHhhhCHHHHHHh------HHHHHHHhccCC
Confidence 666554 112111 1122233332333334 77899999999999998888765432 233455554433
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHHcCccccHhHHHHHHhhhc-CCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHH
Q 004960 306 EAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQ-NASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVL 384 (721)
Q Consensus 306 ~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~i~~~l~~~l~-~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~ 384 (721)
.+.|-.|.+++..+.+. .-+..++..++..+. ++....|...+.-+-.++..........++..+..+.
T Consensus 350 -------~SIRlrALdLl~gmVsk---kNl~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~snY~~ItdFEWYlsVlv 419 (877)
T KOG1059|consen 350 -------ESIRLRALDLLYGMVSK---KNLMEIVKTLMKHVEKAEGTNYRDELLTRIISICSQSNYQYITDFEWYLSVLV 419 (877)
T ss_pred -------chhHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHH
Confidence 67888887777766643 334455665555443 3333556655554444444333344445677777776
Q ss_pred hhcCCCCHhH-HHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHH------hccC--CChHHHHHHHHHHHHHHHhhh
Q 004960 385 GALRDPEQFV-RGAASFALGQFAEYLQPEIVSHYESVLPCILN------ALED--ESDEVKEKSYYALAAFCEDMG 451 (721)
Q Consensus 385 ~~l~d~~~~v-r~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~------~l~~--~~~~v~~~a~~al~~l~~~~~ 451 (721)
++..-+...- +..+-+ +-.++-.. +.++++.-..+..++. ..+. .-..|-.+|+|+++.+.+...
T Consensus 420 eLa~l~~~~~G~~I~eQ-i~Dv~iRV-~~iR~fsV~~m~~Ll~~~~~~~s~q~n~~l~eVL~AaaWi~GEyse~ve 493 (877)
T KOG1059|consen 420 ELARLEGTRHGSLIAEQ-IIDVAIRV-PSIRPFSVSQMSALLDDPLLAGSAQINSQLCEVLYAAAWILGEYSEFVE 493 (877)
T ss_pred HHHhccccchhhHHHHH-HHHHheec-hhhhHhHHHHHHHHHhchhhccchhhccchhHHHHHHHHHHHHHHHHhh
Confidence 6654332111 111111 11222111 2223332222222222 1111 124688899999999987764
No 73
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=1.6e-05 Score=82.32 Aligned_cols=393 Identities=12% Similarity=0.144 Sum_probs=199.2
Q ss_pred ChhHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhcc
Q 004960 49 TPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQ 128 (721)
Q Consensus 49 ~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~ 128 (721)
+..+.-+|...|.+. .++|....+-..+-+.+.+ +++.+|+.++.+...+.++.. +.-..+++...+++.
T Consensus 120 nq~vVglAL~alg~i-------~s~EmardlapeVe~Ll~~-~~~~irKKA~Lca~r~irK~P--~l~e~f~~~~~~lL~ 189 (866)
T KOG1062|consen 120 NQYVVGLALCALGNI-------CSPEMARDLAPEVERLLQH-RDPYIRKKAALCAVRFIRKVP--DLVEHFVIAFRKLLC 189 (866)
T ss_pred CeeehHHHHHHhhcc-------CCHHHhHHhhHHHHHHHhC-CCHHHHHHHHHHHHHHHHcCc--hHHHHhhHHHHHHHh
Confidence 333444444444443 3555555566666666665 899999999999999998763 245667777788888
Q ss_pred CCcHHHHHHHHHHHHHhhhhhhhcc---cccHHHHHHHHHHhhCCC----------CCHHHHHHHHHHHHHhhhhcCChh
Q 004960 129 SEQEEHREVALILFSSLTETIGQTF---RPHFADMQALLLKCLQDE----------TSNRVRIAALKAIGSFLEFTNDGA 195 (721)
Q Consensus 129 ~~~~~~~~~al~~l~~i~~~~~~~~---~~~~~~l~~~l~~~l~~~----------~~~~vr~~a~~~l~~l~~~~~~~~ 195 (721)
+.+.-+..+++..+..+|+..++.+ ....++++.++-+..... ++|=.+...++.|.-+=....+..
T Consensus 190 ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daS 269 (866)
T KOG1062|consen 190 EKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADAS 269 (866)
T ss_pred hcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHH
Confidence 7777677788888888887654332 233344444443333221 234444444444433322211110
Q ss_pred hHHHHHhhHHHHH---------------HHHHHHhh-cCCHHHHHHHHHHHHHHhcCc-------------------ccc
Q 004960 196 EVVKFREFIPSIL---------------NVSRQCLA-SGEEDVAVIAFEIFDELIESP-------------------APL 240 (721)
Q Consensus 196 ~~~~~~~~l~~ll---------------~~l~~~l~-~~~~~~~~~a~~~l~~l~~~~-------------------~~~ 240 (721)
+ .+.+++.++. +.....+. .++...+..|+.+|+++.... +..
T Consensus 270 d--~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~a 347 (866)
T KOG1062|consen 270 D--LMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTA 347 (866)
T ss_pred H--HHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHH
Confidence 0 0111111111 11111111 135566777777777776542 223
Q ss_pred hhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHH
Q 004960 241 LGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAA 320 (721)
Q Consensus 241 ~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~ 320 (721)
...|-..++ +++.+. |..+|+.|++....++.. .-+..++..++..|...++ ..+....
T Consensus 348 vqrHr~tIl----eCL~Dp--D~SIkrralELs~~lvn~--------~Nv~~mv~eLl~fL~~~d~-------~~k~~~a 406 (866)
T KOG1062|consen 348 VQRHRSTIL----ECLKDP--DVSIKRRALELSYALVNE--------SNVRVMVKELLEFLESSDE-------DFKADIA 406 (866)
T ss_pred HHHHHHHHH----HHhcCC--cHHHHHHHHHHHHHHhcc--------ccHHHHHHHHHHHHHhccH-------HHHHHHH
Confidence 333333333 344445 788999999998888853 2255667777777766542 2333333
Q ss_pred HHHHHHHHHcC--cccc-HhHHHHHHhhhcCCChhhHhHHHHHHHH-HhhccHHHHHHhHHHHHHHHHh--hcCCCCHhH
Q 004960 321 EVIDTMALNLA--KHVF-PPVFEFASVSCQNASPKYREAAVTAIGI-ISEGCAEWMKEKLESVLHIVLG--ALRDPEQFV 394 (721)
Q Consensus 321 ~~l~~l~~~~~--~~~~-~~i~~~l~~~l~~~~~~~r~~al~~l~~-i~~~~~~~~~~~l~~i~~~l~~--~l~d~~~~v 394 (721)
.-+..+++.+. +.|. +.++..+. ...-..++.....+-. |+++.++.-.-....+...+.. .+.-+.+.+
T Consensus 407 s~I~~laEkfaP~k~W~idtml~Vl~----~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l 482 (866)
T KOG1062|consen 407 SKIAELAEKFAPDKRWHIDTMLKVLK----TAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPL 482 (866)
T ss_pred HHHHHHHHhcCCcchhHHHHHHHHHH----hcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhH
Confidence 44455555554 2232 22222222 1111222222222222 2333222111111222222111 122234455
Q ss_pred HHHHHHHHHHHHhhhhHH------HHHhhhhHHHHHHHhccC--CChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHH
Q 004960 395 RGAASFALGQFAEYLQPE------IVSHYESVLPCILNALED--ESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLL 466 (721)
Q Consensus 395 r~~a~~~l~~l~~~~~~~------~~~~~~~~l~~l~~~l~~--~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~ 466 (721)
...|.||||.++..+-.. ....-..++..+.+.+.. .+..++..++.|+..+-..+... .+.+=+.+.
T Consensus 483 ~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~----~~ri~~lI~ 558 (866)
T KOG1062|consen 483 LQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSS----SERIKQLIS 558 (866)
T ss_pred HHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcccc----HHHHHHHHH
Confidence 778999999998543210 000113444444444432 23678888899998887666443 233333333
Q ss_pred HhhcCCChhHHHHHHH
Q 004960 467 AALENSPRNLQETCMS 482 (721)
Q Consensus 467 ~~l~~~~~~v~~~~l~ 482 (721)
..-.+-+.++|..+++
T Consensus 559 ~~~~s~~~elQQRa~E 574 (866)
T KOG1062|consen 559 SYKSSLDTELQQRAVE 574 (866)
T ss_pred HhcccccHHHHHHHHH
Confidence 3334446677777765
No 74
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=98.97 E-value=0.0001 Score=77.52 Aligned_cols=543 Identities=15% Similarity=0.161 Sum_probs=282.0
Q ss_pred CCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCC--cHHHHHHHHHHHHHhhhhhh----hcc------cccH-
Q 004960 91 HSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSE--QEEHREVALILFSSLTETIG----QTF------RPHF- 157 (721)
Q Consensus 91 ~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~--~~~~~~~al~~l~~i~~~~~----~~~------~~~~- 157 (721)
+++++|..+...+..+- ..+.+-..|.+...+. ....|+.|+..+.+.++..- +.+ ....
T Consensus 16 ~d~~vr~~AE~~l~qle-------~~~~f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~~~~~e~~K 88 (1005)
T KOG2274|consen 16 ADQNVRSQAETQLKQLE-------LTEGFGVALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEAFRYPLIVSEEVK 88 (1005)
T ss_pred CChhHHHHHHHHHhccc-------cchHHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhhccCCCcccHHHH
Confidence 78999977766655332 2233556666655544 34678889888888886531 111 1112
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCc
Q 004960 158 ADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESP 237 (721)
Q Consensus 158 ~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~ 237 (721)
..+-..+.+++-+ ++..+|.++..++..++.+.- ...+.+++|.++. ++.+++..-...|.++|.++....
T Consensus 89 ~~IRe~Ll~~l~~-sn~ki~~~vay~is~Ia~~D~----Pd~WpElv~~i~~----~l~~~n~n~i~~am~vL~el~~ev 159 (1005)
T KOG2274|consen 89 ALIREQLLNLLDD-SNSKIRSAVAYAISSIAAVDY----PDEWPELVPFILK----LLSSGNENSIHGAMRVLAELSDEV 159 (1005)
T ss_pred HHHHHHHHhhhhc-cccccchHHHHHHHHHHhccC----chhhHHHHHHHHH----HHhccchhhhhhHHHHHHHHHHHH
Confidence 2233555666666 888999999999998877631 1124555555555 777777777788888888876542
Q ss_pred ----ccchhh-hHHHHHHHHHHhhcCCCCChHHHHHHH--HHHHHHHH---HhHhhhh--hcCChHHHHHHHHhhhccCC
Q 004960 238 ----APLLGD-SVKSIVHFSLEVSSSHNLEPNTRHQAI--QIISWLAK---YKYNSLK--KHKLVIPILQVMCPLLAESN 305 (721)
Q Consensus 238 ----~~~~~~-~~~~l~~~~~~~~~~~~~~~~~r~~a~--~~l~~l~~---~~~~~~~--~~~~~~~il~~l~~~l~~~~ 305 (721)
..+..+ .++.. ...+...... +...|..++ ..+..+.. .....-+ ...++.++++..+..+...-
T Consensus 160 ~~ee~~~~~~~~l~~m-~~~f~~~~~~--s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~l~~~~~~l~h~l 236 (1005)
T KOG2274|consen 160 DVEEMFFVGPVSLAEM-YRIFALTIVY--SIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQILNQFMDILEHPL 236 (1005)
T ss_pred HHHHHhcccccchhhh-hhhhhhcccc--chhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 111111 11111 1111111122 333444433 33333322 1111100 01345566666665555433
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHHcCcc-------ccHhHHHHHHhh--------hcC---------CChhhHhHH----
Q 004960 306 EAGEDDDLAPDRAAAEVIDTMALNLAKH-------VFPPVFEFASVS--------CQN---------ASPKYREAA---- 357 (721)
Q Consensus 306 ~~~~~~~~~~~~~a~~~l~~l~~~~~~~-------~~~~i~~~l~~~--------l~~---------~~~~~r~~a---- 357 (721)
.-.+.+++..+..-..++..+.+.++.. .++.+...+.+. ..+ +....++.-
T Consensus 237 ~~~~g~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~~dsd~e~~~~~~l~ 316 (1005)
T KOG2274|consen 237 QRNDGSDFSLRMEILKCLTQLVENFPSLINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDARYDSDPEEKSVETLV 316 (1005)
T ss_pred cccccchHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCcccccCCchhhhChHHhh
Confidence 2222345677777777788777776631 223333322221 110 011112111
Q ss_pred ---HHHHHHHhhcc--HHHHHHhHHHHHHHHHh------------------hcCCCCH--hHHHHHHHHHHHHHhhhhHH
Q 004960 358 ---VTAIGIISEGC--AEWMKEKLESVLHIVLG------------------ALRDPEQ--FVRGAASFALGQFAEYLQPE 412 (721)
Q Consensus 358 ---l~~l~~i~~~~--~~~~~~~l~~i~~~l~~------------------~l~d~~~--~vr~~a~~~l~~l~~~~~~~ 412 (721)
+..+..+.... .+.+...+++++..+.- ...|+++ .+|..+...+-.+...++..
T Consensus 317 i~i~eF~s~i~t~~~~~~ti~~~l~~lI~~~v~y~Qlseeqie~w~sD~~~fV~dEd~~~~~~~~~rd~~~~v~~~f~~~ 396 (1005)
T KOG2274|consen 317 IQIVEFLSTIVTNRFLSKTIKKNLPELIYQLVAYLQLSEEQIEVWTSDVNQFVADEDDGYTARISVRDLLLEVITTFGNE 396 (1005)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHhccHHHhhccCCCCchhhhhHHHHHHHHHHhccch
Confidence 11122222111 11111122222221111 1122221 23333222222222222100
Q ss_pred ----------------------------------------------HHHhhhhHHHHHHHhccC-CChHHHHHHHHHHHH
Q 004960 413 ----------------------------------------------IVSHYESVLPCILNALED-ESDEVKEKSYYALAA 445 (721)
Q Consensus 413 ----------------------------------------------~~~~~~~~l~~l~~~l~~-~~~~v~~~a~~al~~ 445 (721)
...++..++..+..++.. ..+..-.++.+++..
T Consensus 397 ~i~~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~~~~~~dd~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~ 476 (1005)
T KOG2274|consen 397 GINPIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVRIDDANDDKLIELTIMIDNGLVYQESPFLLLRAFLTISK 476 (1005)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcccCcchHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHH
Confidence 011222233333333332 234444578888886
Q ss_pred HHHhhhhccccchHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHhccCchhhhhHHHH
Q 004960 446 FCEDMGEEILPFLDPLMGKLLAALENS-PRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARA 524 (721)
Q Consensus 446 l~~~~~~~~~~~~~~i~~~l~~~l~~~-~~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~ 524 (721)
+.+... ...+.+..++...++.+.-. .+.++..++.++...+ ....+.++.+.++..|.++....+++ +-...
T Consensus 477 fs~~~~-~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~--~~~vl~~~~p~ild~L~qlas~~s~e---vl~ll 550 (1005)
T KOG2274|consen 477 FSSSTV-INPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYC--KVKVLLSLQPMILDGLLQLASKSSDE---VLVLL 550 (1005)
T ss_pred HHhhhc-cchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhcc--CceeccccchHHHHHHHHHcccccHH---HHHHH
Confidence 665532 22345556666666665544 5667888877776555 22556678888888887776544333 22345
Q ss_pred HHHHHHHHHhhchhhccC----ChHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHcccCcccchhhhHHHHHhhccCCC
Q 004960 525 TELLGLVAESVGRARMEP----ILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDD 600 (721)
Q Consensus 525 ~~~l~~l~~~~~~~~~~~----~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~ 600 (721)
+++++.++ .+.++.-.. ..+.++...... .++|.+..-+..++..+++ ......|+....+|.+++.+....
T Consensus 551 mE~Ls~vv-~~dpef~as~~skI~P~~i~lF~k~--s~DP~V~~~~qd~f~el~q-~~~~~g~m~e~~iPslisil~~~~ 626 (1005)
T KOG2274|consen 551 MEALSSVV-KLDPEFAASMESKICPLTINLFLKY--SEDPQVASLAQDLFEELLQ-IAANYGPMQERLIPSLISVLQLNA 626 (1005)
T ss_pred HHHHHHHh-ccChhhhhhhhcchhHHHHHHHHHh--cCCchHHHHHHHHHHHHHH-HHHhhcchHHHHHHHHHHHHcCcc
Confidence 67777766 333322111 223333333332 3467777777777777776 334567888999999998875432
Q ss_pred CCccCCCCCccccccCCCCCCCCchhhhhccccceeeecchhhhHHHHHHHHHHHHHHccccccc-hHHHHHHHHHhc-c
Q 004960 601 GSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAP-FLEESLKILVRH-A 678 (721)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~~~~~~~-~~~~~~~~l~~~-~ 678 (721)
... + ...-..|+..+..+++..+..+.. .+...++.+.+. +
T Consensus 627 ~~~-------------~------------------------~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tl 669 (1005)
T KOG2274|consen 627 DKA-------------P------------------------AGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITL 669 (1005)
T ss_pred ccc-------------C------------------------chhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhhee
Confidence 110 0 112356889999999999877643 356778888887 4
Q ss_pred cCCChhHHHHHHHHHHHHHHH
Q 004960 679 SYFHEDVRYQAVFALKNILTA 699 (721)
Q Consensus 679 ~~~~~~vr~~a~~~l~~l~~~ 699 (721)
..-+..+-+.|.++|..++..
T Consensus 670 HsdD~~tlQ~~~EcLra~Is~ 690 (1005)
T KOG2274|consen 670 HSDDHETLQNATECLRALISV 690 (1005)
T ss_pred ecCChHHHHhHHHHHHHHHhc
Confidence 445678899999999998876
No 75
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.96 E-value=3.5e-05 Score=85.33 Aligned_cols=522 Identities=16% Similarity=0.105 Sum_probs=256.1
Q ss_pred CCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCCh
Q 004960 115 EWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDG 194 (721)
Q Consensus 115 ~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~ 194 (721)
.+..++..|+..+..+....|--|++|+..+++..+..+ .-+++...+.+-+.| ++..||.+|+..+++++-..++.
T Consensus 813 sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL--~~~dvq~~Vh~R~~D-ssasVREAaldLvGrfvl~~~e~ 889 (1692)
T KOG1020|consen 813 SFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVL--SRPDVQEAVHGRLND-SSASVREAALDLVGRFVLSIPEL 889 (1692)
T ss_pred hhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhh--cCHHHHHHHHHhhcc-chhHHHHHHHHHHhhhhhccHHH
Confidence 567788899999998888999999999999998766543 236677777788888 89999999999999998765332
Q ss_pred hhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 004960 195 AEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIIS 274 (721)
Q Consensus 195 ~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~ 274 (721)
..++...+.+ -+.|....||+.+++++..+.+..|.+- .. +.+...|+.-..++ +..++..+.+++.
T Consensus 890 -----~~qyY~~i~e----rIlDtgvsVRKRvIKIlrdic~e~pdf~-~i-~~~cakmlrRv~DE--Eg~I~kLv~etf~ 956 (1692)
T KOG1020|consen 890 -----IFQYYDQIIE----RILDTGVSVRKRVIKILRDICEETPDFS-KI-VDMCAKMLRRVNDE--EGNIKKLVRETFL 956 (1692)
T ss_pred -----HHHHHHHHHh----hcCCCchhHHHHHHHHHHHHHHhCCChh-hH-HHHHHHHHHHhccc--hhHHHHHHHHHHH
Confidence 2334444444 5667888999999999999998876532 22 22222222222222 2235555554433
Q ss_pred HHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHH-HHHcCccccHhHHHHHHhhhc----CC
Q 004960 275 WLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTM-ALNLAKHVFPPVFEFASVSCQ----NA 349 (721)
Q Consensus 275 ~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l-~~~~~~~~~~~i~~~l~~~l~----~~ 349 (721)
.+ |+.+ .... .+.....+.....+-... +...+..+.+.++..+...-. ..
T Consensus 957 kl------WF~p-----------------~~~~-~d~~~~~~kI~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~~~~ 1012 (1692)
T KOG1020|consen 957 KL------WFTP-----------------VPEV-NDQPAKARKISLEVDVVMSQVDLMNDWLEQLLDHILKFYLLKTMKE 1012 (1692)
T ss_pred HH------hccC-----------------CCcc-cccHHHHHhhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhhhhh
Confidence 22 1111 0000 000000000000000000 001222233333333322100 00
Q ss_pred -ChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHH-HHHHHHHHHHhhhhHHHH-HhhhhHHHHHHH
Q 004960 350 -SPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRG-AASFALGQFAEYLQPEIV-SHYESVLPCILN 426 (721)
Q Consensus 350 -~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~-~a~~~l~~l~~~~~~~~~-~~~~~~l~~l~~ 426 (721)
--....+.+...-.+...|- ...+...--....+++..+|. +.+.+|..++...|.-+. +|...+-|.|..
T Consensus 1013 ~~~~v~~~~v~~~~~L~~~cl------~~~i~ev~~~~~~~~~~~~~~~~~lstL~~FskirP~Llt~khv~tL~PYL~s 1086 (1692)
T KOG1020|consen 1013 SVKPVALAKVTHVLNLLTHCL------VEKISEVESDDMNEEESEVRLLAYLSTLFVFSKIRPQLLTKKHVITLQPYLTS 1086 (1692)
T ss_pred hhhHHHHhhcchHHHHHHHHH------HHHHHhhhhHhhhcccchhHHHHHHHHHHHHHhcCchhccHHHHHHhhhHHhc
Confidence 00011111111111111100 011111111122233344443 444556666666554444 466666666654
Q ss_pred hccCC-ChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhcchh---hHHHH
Q 004960 427 ALEDE-SDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIP---YAERV 502 (721)
Q Consensus 427 ~l~~~-~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~~~~~---~~~~i 502 (721)
..... ...+....+..+...+...+..-..++..+=+.|.+.+..........+..|++.++....+++.. .+...
T Consensus 1087 ~~~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~ 1166 (1692)
T KOG1020|consen 1087 KASTIEEAQFLYYVIQILECVLPLVANPSESFLASLEEDLLKRIVKMGMATVVEAVSCLGSLATKRTDGAKVVKACFSCY 1166 (1692)
T ss_pred cccchHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhccchHHHHHHHHHH
Confidence 42221 123444444444444444433333455566566666666666556677888999998875544432 12222
Q ss_pred HHHHHHHHhccCchh-----hhhHHHHHHHHHHHHHhhch-------hhccCC----hHHHHHHHHhccCCCChhhHHHH
Q 004960 503 LELLKIFMVLTNDED-----LRSRARATELLGLVAESVGR-------ARMEPI----LPPFVEAAISGFGLEFSELREYT 566 (721)
Q Consensus 503 ~~~l~~~l~~~~~~~-----~~~~~~~~~~l~~l~~~~~~-------~~~~~~----~~~i~~~l~~~l~~~~~~~~~~~ 566 (721)
+..+.. ++...+++ ...-.+.+-++|.+++...- ..+... .+.++..+.-..+..+..+|..+
T Consensus 1167 ~k~le~-~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~~~~lR~~a 1245 (1692)
T KOG1020|consen 1167 LKLLEV-IKSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDKDGELRRKA 1245 (1692)
T ss_pred HHHHHH-HHhccccccchhhhHHHHHHHHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 222221 11211111 11234688899999874321 112211 23344444333445679999999
Q ss_pred HHHHHHHHHHcccCc-ccchhhhHHHHHhhccCCCC-CccCCCCCccccccCCCCCCCCchhhhhccccceeeecchhhh
Q 004960 567 HGFFSNIAGVLEDGF-AQYLPLVVPLAFSSCNLDDG-SAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDE 644 (721)
Q Consensus 567 ~~~l~~l~~~~~~~~-~~~l~~i~~~ll~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (721)
+..+|.+|-.-+..| .+-+..++..+++..+.+.. .+..... .+. | ..+.+-++.. +..-.+
T Consensus 1246 l~~Lg~~ci~hp~l~~~~~v~nly~~ila~~n~~~~~ki~~l~n--~~~---y---L~eee~~l~~--------~~~~w~ 1309 (1692)
T KOG1020|consen 1246 LINLGFICIQHPSLFTSREVLNLYDEILADDNSDIKSKIQLLQN--LEL---Y---LLEEEKKLRN--------KGKNWT 1309 (1692)
T ss_pred HHHHHHHHhhCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHH--HHH---H---HHHHHHHHHh--------cccchh
Confidence 999999987666543 44445555555543322211 0000000 000 0 0000001110 001112
Q ss_pred HHHHHHHHHHHHHHccccccc-----hHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHH
Q 004960 645 KAAATQALGLFALHTKSSYAP-----FLEESLKILVRHASYFHEDVRYQAVFALKNILTA 699 (721)
Q Consensus 645 k~~a~~~l~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~ 699 (721)
+.+-.+-++.+.....+.... .+...++.++..+-+.+..+|..|++.+.-+++.
T Consensus 1310 ~~~k~edlkem~~v~sg~~s~~~~~~i~Qlfl~~ILe~cl~~d~~~r~~aikvl~liL~Q 1369 (1692)
T KOG1020|consen 1310 KSNKSEDLKEMLDVSSGMGSSDGVSAIMQLFLDNILESCLDRDLQVRLVAIKVLKLILNQ 1369 (1692)
T ss_pred hhhhHHHHHhhcccccccccccchHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHc
Confidence 233333344443333222222 4555666667777777889999999888777664
No 76
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=3e-05 Score=78.98 Aligned_cols=334 Identities=13% Similarity=0.117 Sum_probs=200.0
Q ss_pred hHHHHHHhccCCcHHHHHHHHHHHHHhhhhh-hhcccccHHHHHHHHHHhhCCC-CCHHHHHHHHHHHHHhhhhcCChhh
Q 004960 119 LLPFLFQFSQSEQEEHREVALILFSSLTETI-GQTFRPHFADMQALLLKCLQDE-TSNRVRIAALKAIGSFLEFTNDGAE 196 (721)
Q Consensus 119 ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~-~~~~~~~~~~l~~~l~~~l~~~-~~~~vr~~a~~~l~~l~~~~~~~~~ 196 (721)
++..+..-+.+.|+.....|+.|++++-... .+. +.+++- ++|-+. ...-||..|.-|+..+.+..++...
T Consensus 112 vin~iknDL~srn~~fv~LAL~~I~niG~re~~ea---~~~DI~----KlLvS~~~~~~vkqkaALclL~L~r~spDl~~ 184 (938)
T KOG1077|consen 112 VINSIKNDLSSRNPTFVCLALHCIANIGSREMAEA---FADDIP----KLLVSGSSMDYVKQKAALCLLRLFRKSPDLVN 184 (938)
T ss_pred HHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHH---hhhhhH----HHHhCCcchHHHHHHHHHHHHHHHhcCccccC
Confidence 4555566667778888899999999986432 222 223333 444331 3557999999999999887665432
Q ss_pred HHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 004960 197 VVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWL 276 (721)
Q Consensus 197 ~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l 276 (721)
.+.+..++++ .+.+.+-.+..++...+..++...++....-++.-+..+..++.....+ ...+..
T Consensus 185 ---~~~W~~riv~----LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~--~qdYTy------ 249 (938)
T KOG1077|consen 185 ---PGEWAQRIVH----LLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTS--LQDYTY------ 249 (938)
T ss_pred ---hhhHHHHHHH----HhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccc--hhhcee------
Confidence 3567777777 5666666677778888888888777666555554444443333222111 000000
Q ss_pred HHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcCccccHhHHHHHHhhhcCCChhhHh-
Q 004960 277 AKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYRE- 355 (721)
Q Consensus 277 ~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~i~~~l~~~l~~~~~~~r~- 355 (721)
.+.+ .+=+...++.+|.... ..+|...+....+++..+-+...+ .-++.+...+.
T Consensus 250 ------y~vP---~PWL~vKl~rlLq~~p---~~~D~~~r~~l~evl~~iLnk~~~------------~~~~k~vq~~na 305 (938)
T KOG1077|consen 250 ------YFVP---APWLQVKLLRLLQIYP---TPEDPSTRARLNEVLERILNKAQE------------PPKSKKVQHSNA 305 (938)
T ss_pred ------ecCC---ChHHHHHHHHHHHhCC---CCCCchHHHHHHHHHHHHHhcccc------------CccccchHhhhh
Confidence 0000 0112223334433321 112344555555555554443321 11333333333
Q ss_pred --HHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhcc-CCC
Q 004960 356 --AAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALE-DES 432 (721)
Q Consensus 356 --~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~-~~~ 432 (721)
+.++-.-+++..... -.+.+...+..+-+.+.+..+.+|+-|+..+..++..-.. .+.+..-...++..|+ +.+
T Consensus 306 ~naVLFeaI~l~~h~D~-e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s--~davK~h~d~Ii~sLkterD 382 (938)
T KOG1077|consen 306 KNAVLFEAISLAIHLDS-EPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFS--IDAVKKHQDTIINSLKTERD 382 (938)
T ss_pred HHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccch--HHHHHHHHHHHHHHhccccc
Confidence 223222222222111 1123556778888899999999999999999998876321 1222222455566677 677
Q ss_pred hHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHH
Q 004960 433 DEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLK 507 (721)
Q Consensus 433 ~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~~l~ 507 (721)
..+|..|...|..+|+... ...|+..+++-+.+.+..+|+...--++.+++....++.=|.+.++..+.
T Consensus 383 vSirrravDLLY~mcD~~N------ak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLir 451 (938)
T KOG1077|consen 383 VSIRRRAVDLLYAMCDVSN------AKQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIR 451 (938)
T ss_pred hHHHHHHHHHHHHHhchhh------HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHH
Confidence 8899999999999987653 35688888888888999999999888888888877777667776666553
No 77
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.89 E-value=4e-07 Score=97.60 Aligned_cols=299 Identities=17% Similarity=0.196 Sum_probs=190.7
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCc---
Q 004960 161 QALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESP--- 237 (721)
Q Consensus 161 ~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~--- 237 (721)
++.+..++..-...+.|.+|+..|..+..+..+. ..++.++|.++. ++.++..++|..|+..|.++...-
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de---~~LDRVlPY~v~----l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~ 496 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDDE---VKLDRVLPYFVH----LLMDSEADVRATALETLTELLALVRDI 496 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchH---HHHhhhHHHHHH----HhcCchHHHHHHHHHHHHHHHhhccCC
Confidence 3444444443245688999999999998887543 234567777777 778889999999999999886542
Q ss_pred ccchhhhHHH-HHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHh--hhccCCCCCCCCCCc
Q 004960 238 APLLGDSVKS-IVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCP--LLAESNEAGEDDDLA 314 (721)
Q Consensus 238 ~~~~~~~~~~-l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~--~l~~~~~~~~~~~~~ 314 (721)
++.-...++. +++.+-....+. ....+|..-...|..+++.+..... -. ..+-. ++.+.+++ ...+..
T Consensus 497 ~~~daniF~eYlfP~L~~l~~d~-~~~~vRiayAsnla~LA~tA~rFle------~~-q~~~~~g~~n~~nse-t~~~~~ 567 (1431)
T KOG1240|consen 497 PPSDANIFPEYLFPHLNHLLNDS-SAQIVRIAYASNLAQLAKTAYRFLE------LT-QELRQAGMLNDPNSE-TAPEQN 567 (1431)
T ss_pred CcccchhhHhhhhhhhHhhhccC-ccceehhhHHhhHHHHHHHHHHHHH------HH-HHHHhcccccCcccc-cccccc
Confidence 2111112222 223222233232 2455677666777777765433211 00 00000 11111100 000000
Q ss_pred HHHHHHHHHHHHHHHcCccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhH
Q 004960 315 PDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFV 394 (721)
Q Consensus 315 ~~~~a~~~l~~l~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~v 394 (721)
....+.. ....+-+.+...+.++...+|.+-+..++-+....++.-. -+-+++.++..|+|.++.+
T Consensus 568 ~~~~~~~------------L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ks--ND~iLshLiTfLNDkDw~L 633 (1431)
T KOG1240|consen 568 YNTELQA------------LHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKS--NDVILSHLITFLNDKDWRL 633 (1431)
T ss_pred cchHHHH------------HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhccc--ccchHHHHHHHhcCccHHH
Confidence 0000000 1122233344556677788899888887777665443222 2467889999999999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCCh
Q 004960 395 RGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPR 474 (721)
Q Consensus 395 r~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~ 474 (721)
|.+-+..|..++-+.+.. ..-+-++|.+.++|.|..+.|...|+.++..+++..- -=++++.++++....++.+++.
T Consensus 634 R~aFfdsI~gvsi~VG~r--s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~l-l~K~~v~~i~~~v~PlL~hPN~ 710 (1431)
T KOG1240|consen 634 RGAFFDSIVGVSIFVGWR--SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGL-LRKPAVKDILQDVLPLLCHPNL 710 (1431)
T ss_pred HHHHHhhccceEEEEeee--eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcc-cchHHHHHHHHhhhhheeCchH
Confidence 999999998888777642 2334678999999999999999999999999987641 1236788899999999999999
Q ss_pred hHHHHHHHHHHHHHHHhh
Q 004960 475 NLQETCMSAIGSVAAAAE 492 (721)
Q Consensus 475 ~v~~~~l~~l~~l~~~~~ 492 (721)
.+|..++..|..++...+
T Consensus 711 WIR~~~~~iI~~~~~~ls 728 (1431)
T KOG1240|consen 711 WIRRAVLGIIAAIARQLS 728 (1431)
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 999999999988887765
No 78
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=98.87 E-value=2.6e-05 Score=82.07 Aligned_cols=218 Identities=14% Similarity=0.132 Sum_probs=164.1
Q ss_pred hhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhH-------------HHHHhhh
Q 004960 352 KYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQP-------------EIVSHYE 418 (721)
Q Consensus 352 ~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-------------~~~~~~~ 418 (721)
..++.|+..+.++..+.--...+....+...++.+++++ .+-..+..+++-+....++ .-++++.
T Consensus 789 dls~~al~~l~Wv~KaLl~R~~~~s~~ia~klld~Ls~~--~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~ 866 (1030)
T KOG1967|consen 789 DLSEIALTVLAWVTKALLLRNHPESSEIAEKLLDLLSGP--STGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFC 866 (1030)
T ss_pred chhhHHHHHHHHHHHHHHHcCCcccchHHHHHHHhcCCc--cccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHH
Confidence 456777777777666532222222334555566666653 2334445555554433221 1245789
Q ss_pred hHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhh-ccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhcchh
Q 004960 419 SVLPCILNALEDESDEVKEKSYYALAAFCEDMGE-EILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIP 497 (721)
Q Consensus 419 ~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~-~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~~~~~ 497 (721)
+++|.+.+.+......++..-..+|..++.+.+. .+.|.++.+++.|++.++-++..+|-..++++..+....+.-...
T Consensus 867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~ 946 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTE 946 (1030)
T ss_pred hhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchH
Confidence 9999999999966677899999999999998864 577999999999999999999999999999999999998888889
Q ss_pred hHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCChhhHHHHHHHHH
Q 004960 498 YAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFS 571 (721)
Q Consensus 498 ~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~ 571 (721)
|++.++|.+..+=...++.-..+|..|+.|++.+.+.+....+.+|-+.+++.+...+.|+..-+|..|..+=+
T Consensus 947 ~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen 947 HLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQ 1020 (1030)
T ss_pred HHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhh
Confidence 99999998876543222222568999999999999877766788999999999999999888889988866543
No 79
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.86 E-value=3.6e-08 Score=76.22 Aligned_cols=92 Identities=20% Similarity=0.326 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCC
Q 004960 394 VRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSP 473 (721)
Q Consensus 394 vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~ 473 (721)
-|..++.+|..++..++..+.+|++.+++.+++.+.|++.+||..||.+|.++++..+..+.+|+.+++..|.++..+.+
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 47889999999999999998999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHH
Q 004960 474 RNLQETCMSAIGS 486 (721)
Q Consensus 474 ~~v~~~~l~~l~~ 486 (721)
++||..+ +.+..
T Consensus 82 ~~Vr~~a-~~Ld~ 93 (97)
T PF12755_consen 82 ENVRSAA-ELLDR 93 (97)
T ss_pred hhHHHHH-HHHHH
Confidence 9999877 34433
No 80
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.86 E-value=3.6e-05 Score=82.23 Aligned_cols=490 Identities=15% Similarity=0.162 Sum_probs=249.7
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHH
Q 004960 4 SLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSL 83 (721)
Q Consensus 4 ~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i~~~l 83 (721)
.+.+.++.++.. ...+-+++..+.++..+|+.+..|.+ + ......|.|.+++.|+. +-+.-..|...+
T Consensus 124 ~~d~yiE~lYe~-~~ek~~~~~~il~La~~~~NL~~l~~---n-------e~l~~aL~RvLred~~k-s~~l~tnI~~iF 191 (708)
T PF05804_consen 124 DLDEYIELLYED-IPEKIRGTSLILQLARNPENLEELVQ---N-------ETLMSALARVLREDWKK-SVELATNIIYIF 191 (708)
T ss_pred HHHHHHHHHhcc-cHHHHHHHHHHHHHhCCcchHHHHHH---h-------HHHHHHHHHHHHHHhhh-hHHHHHHHHHHH
Confidence 455667777753 45566777888888888876555443 2 23444567777887876 333333333222
Q ss_pred HHHHhh--cCCH-HHHHHHHHHHHHHHccccCC-CCCcc---------------------hHHHHHHhccCCcHHHHHHH
Q 004960 84 IESITL--EHSA-PVRRASANVVSIIAKYAVPA-GEWPD---------------------LLPFLFQFSQSEQEEHREVA 138 (721)
Q Consensus 84 l~~l~~--e~~~-~vr~~~~~~l~~i~~~~~~~-~~~~~---------------------ll~~l~~~l~~~~~~~~~~a 138 (721)
+ ++.+ +-.+ -.+..++...=.+..++..+ ..|.. ....+..++... ......+
T Consensus 192 ~-~fS~f~~fH~~l~~~kiG~l~m~iie~Elkr~~~w~~~l~~~~~~~~~~~~~~~~~~~~~kk~~~l~~kQ-eqLlrv~ 269 (708)
T PF05804_consen 192 F-CFSNFSQFHPILAHYKIGSLCMEIIEHELKRHDLWQEELRKKKKAAEEKPEAKKDYEKELKKLQTLIRKQ-EQLLRVA 269 (708)
T ss_pred H-HHHhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhhHHHHHHHHHHHHHHH-HHHHHHH
Confidence 1 1211 1111 11222222222222221110 12321 222333333332 2344577
Q ss_pred HHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcC
Q 004960 139 LILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASG 218 (721)
Q Consensus 139 l~~l~~i~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~ 218 (721)
+..|.++++.........-..+++.+.++|.. .+.++...++.+|.++.-+..... ...-.+.++.+.. .++.+
T Consensus 270 ~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr-~n~ellil~v~fLkkLSi~~ENK~-~m~~~giV~kL~k----Ll~s~ 343 (708)
T PF05804_consen 270 FYLLLNLAEDPRVELKMVNKGIVSLLVKCLDR-ENEELLILAVTFLKKLSIFKENKD-EMAESGIVEKLLK----LLPSE 343 (708)
T ss_pred HHHHHHHhcChHHHHHHHhcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCHHHHH-HHHHcCCHHHHHH----HhcCC
Confidence 88888888776544433446788889999988 789999999999998876653322 2223566777666 66777
Q ss_pred CHHHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhH--hhhhhcCChHHHHHH
Q 004960 219 EEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKY--NSLKKHKLVIPILQV 296 (721)
Q Consensus 219 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~--~~~~~~~~~~~il~~ 296 (721)
+.+....+++.|..+.....-.-.-.-.++++.+...+.+ +..+..++.++..++.... ..+... ..++.
T Consensus 344 ~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d----~~~~~val~iLy~LS~dd~~r~~f~~T----dcIp~ 415 (708)
T PF05804_consen 344 NEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKD----PNFREVALKILYNLSMDDEARSMFAYT----DCIPQ 415 (708)
T ss_pred CHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCC----CchHHHHHHHHHHhccCHhhHHHHhhc----chHHH
Confidence 8889999999999887654221111111233333344432 2345667777777663211 111111 12333
Q ss_pred HHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcCccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccH--HHHH-
Q 004960 297 MCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCA--EWMK- 373 (721)
Q Consensus 297 l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~--~~~~- 373 (721)
++.++.... +......++.++.+++..-. +.+.
T Consensus 416 L~~~Ll~~~--------------------------------------------~~~v~~eliaL~iNLa~~~rnaqlm~~ 451 (708)
T PF05804_consen 416 LMQMLLENS--------------------------------------------EEEVQLELIALLINLALNKRNAQLMCE 451 (708)
T ss_pred HHHHHHhCC--------------------------------------------CccccHHHHHHHHHHhcCHHHHHHHHh
Confidence 333332221 11111111111111111100 0000
Q ss_pred -HhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCC-ChHHHHHHHHHHHHHHHhhh
Q 004960 374 -EKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDE-SDEVKEKSYYALAAFCEDMG 451 (721)
Q Consensus 374 -~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~-~~~v~~~a~~al~~l~~~~~ 451 (721)
..++.++... ++..++. .++.+.+++.+-++ ....+.+.+..++..+... +......++.+|+++.-. +
T Consensus 452 g~gL~~L~~ra---~~~~D~l----LlKlIRNiS~h~~~-~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~-~ 522 (708)
T PF05804_consen 452 GNGLQSLMKRA---LKTRDPL----LLKLIRNISQHDGP-LKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIP-D 522 (708)
T ss_pred cCcHHHHHHHH---HhcccHH----HHHHHHHHHhcCch-HHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccC-C
Confidence 1122333222 2233333 23566666666532 2334455566666666544 455666677777766422 1
Q ss_pred hccccchH--HHHHHHHHhhcCC--ChhHHHHHHHHHHHHHHHhhhcchhhH--HHHHHHHHHHHhccCchhhhhHHHHH
Q 004960 452 EEILPFLD--PLMGKLLAALENS--PRNLQETCMSAIGSVAAAAEQAFIPYA--ERVLELLKIFMVLTNDEDLRSRARAT 525 (721)
Q Consensus 452 ~~~~~~~~--~i~~~l~~~l~~~--~~~v~~~~l~~l~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~~~~~~~~ 525 (721)
......+. .+++.+.+.+..+ +..+.-+++-.+|+++. .+...+.+ ..+++.+..++....++ -+..-..+
T Consensus 523 ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~--d~~~A~lL~~sgli~~Li~LL~~kqeD-dE~VlQil 599 (708)
T PF05804_consen 523 LDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS--DPECAPLLAKSGLIPTLIELLNAKQED-DEIVLQIL 599 (708)
T ss_pred cCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC--CHHHHHHHHhCChHHHHHHHHHhhCch-HHHHHHHH
Confidence 12222232 5666677776544 34566666666676653 23333433 24677777777543322 22323445
Q ss_pred HHHHHHHHhh-chhhccCChHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHcc
Q 004960 526 ELLGLVAESV-GRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLE 578 (721)
Q Consensus 526 ~~l~~l~~~~-~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~ 578 (721)
-++..+...- ..+.+... .++...++..++++++++|+.+-.++.-++..-+
T Consensus 600 ~~f~~ll~h~~tr~~ll~~-~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~ 652 (708)
T PF05804_consen 600 YVFYQLLFHEETREVLLKE-TEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDE 652 (708)
T ss_pred HHHHHHHcChHHHHHHHhc-cchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCH
Confidence 5555554221 11122111 3577788888999999999998888887776543
No 81
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.86 E-value=3.3e-07 Score=98.25 Aligned_cols=297 Identities=17% Similarity=0.157 Sum_probs=189.8
Q ss_pred hHHHHHHhccC-CcHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCCh--h
Q 004960 119 LLPFLFQFSQS-EQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDG--A 195 (721)
Q Consensus 119 ll~~l~~~l~~-~~~~~~~~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~--~ 195 (721)
+++.+..++.+ ...+.+..|+..+..+.....++ ..++.++|.+..++.| +.+.||..|+.++..++....+- .
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de--~~LDRVlPY~v~l~~D-s~a~Vra~Al~Tlt~~L~~Vr~~~~~ 499 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDDE--VKLDRVLPYFVHLLMD-SEADVRATALETLTELLALVRDIPPS 499 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchH--HHHhhhHHHHHHHhcC-chHHHHHHHHHHHHHHHhhccCCCcc
Confidence 45555555543 23356778888888887665443 3578999999999999 99999999999999886654321 1
Q ss_pred hHHHHHhhHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHhhcCCCC--ChHHHHHHHHH
Q 004960 196 EVVKFREFIPSILNVSRQCLAS-GEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNL--EPNTRHQAIQI 272 (721)
Q Consensus 196 ~~~~~~~~l~~ll~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~r~~a~~~ 272 (721)
+...+.++ ++..|...+.+ ....+|..-..+|..++.....|+......=..-|. ...+. ..+.+..+
T Consensus 500 daniF~eY---lfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~---n~~nset~~~~~~~~--- 570 (1431)
T KOG1240|consen 500 DANIFPEY---LFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGML---NDPNSETAPEQNYNT--- 570 (1431)
T ss_pred cchhhHhh---hhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccc---cCcccccccccccch---
Confidence 22223333 22233334555 344566666778888776544433221110000000 11100 00000000
Q ss_pred HHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcCccc-cHhHHHHHHhhhcCCCh
Q 004960 273 ISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHV-FPPVFEFASVSCQNASP 351 (721)
Q Consensus 273 l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~-~~~i~~~l~~~l~~~~~ 351 (721)
.. +.....+-+....++++.+ ..++++..+.+..|+..+|+.- =+.++..+..++++.+|
T Consensus 571 ----------~~--~~L~~~V~~~v~sLlsd~~-------~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw 631 (1431)
T KOG1240|consen 571 ----------EL--QALHHTVEQMVSSLLSDSP-------PIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDW 631 (1431)
T ss_pred ----------HH--HHHHHHHHHHHHHHHcCCc-------hHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccH
Confidence 00 0011222223334444433 5678888888999999888533 35678889999999999
Q ss_pred hhHhHHHHHHHHHhhccHHH-HHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHH-HhhhhHHHHHHHhcc
Q 004960 352 KYREAAVTAIGIISEGCAEW-MKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIV-SHYESVLPCILNALE 429 (721)
Q Consensus 352 ~~r~~al~~l~~i~~~~~~~-~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-~~~~~~l~~l~~~l~ 429 (721)
..|-+-+..+..++...+.. .. +-++|.+...|.|+.+.|...|+.++..+++.- .+. .++-+++......|-
T Consensus 632 ~LR~aFfdsI~gvsi~VG~rs~s---eyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~--ll~K~~v~~i~~~v~PlL~ 706 (1431)
T KOG1240|consen 632 RLRGAFFDSIVGVSIFVGWRSVS---EYLLPLLQQGLTDGEEAVIVSALGSLSILIKLG--LLRKPAVKDILQDVLPLLC 706 (1431)
T ss_pred HHHHHHHhhccceEEEEeeeeHH---HHHHHHHHHhccCcchhhHHHHHHHHHHHHHhc--ccchHHHHHHHHhhhhhee
Confidence 99999887777666544432 23 356889999999999999999999999998752 122 466777777788888
Q ss_pred CCChHHHHHHHHHHHHHHHhhh
Q 004960 430 DESDEVKEKSYYALAAFCEDMG 451 (721)
Q Consensus 430 ~~~~~v~~~a~~al~~l~~~~~ 451 (721)
.++..+|..++..+..+....+
T Consensus 707 hPN~WIR~~~~~iI~~~~~~ls 728 (1431)
T KOG1240|consen 707 HPNLWIRRAVLGIIAAIARQLS 728 (1431)
T ss_pred CchHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999998888764
No 82
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.84 E-value=4.9e-05 Score=82.52 Aligned_cols=143 Identities=20% Similarity=0.173 Sum_probs=110.7
Q ss_pred CCChhHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHHHHHHhhc---------CCHHHHHHHHHHHHHHHccccCCCCCc
Q 004960 47 AKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLE---------HSAPVRRASANVVSIIAKYAVPAGEWP 117 (721)
Q Consensus 47 ~~~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i~~~ll~~l~~e---------~~~~vr~~~~~~l~~i~~~~~~~~~~~ 117 (721)
++..++|+-|++.++...+.+.+.++-+..+.+.-.++..+.-+ -...||...+++++.+..+..+. ...
T Consensus 88 ~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~l~~~~~s-~~~ 166 (1549)
T KOG0392|consen 88 EPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAYLKHMDES-LIK 166 (1549)
T ss_pred CchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHHhhhhH-hhH
Confidence 46789999999999999999888777666666665565554422 12368999999999998876543 567
Q ss_pred chHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhc
Q 004960 118 DLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFT 191 (721)
Q Consensus 118 ~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~ 191 (721)
..+..+.+.+..++|+.|++++..+.....-..+.+....+.+++.+..+++| .+..||..|...+.......
T Consensus 167 ~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~d-s~ddv~~~aa~~l~~~~s~~ 239 (1549)
T KOG0392|consen 167 ETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLED-SDDDVRSVAAQFLVPAPSIQ 239 (1549)
T ss_pred HHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-cchHHHHHHHHHhhhhhHHH
Confidence 77888889988889999999999988776644444445667888999999999 88899998888887665443
No 83
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=98.82 E-value=0.00035 Score=73.88 Aligned_cols=159 Identities=17% Similarity=0.126 Sum_probs=131.1
Q ss_pred hhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCChhhHHHHHHHHHHHHHH
Q 004960 497 PYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGV 576 (721)
Q Consensus 497 ~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~ 576 (721)
.|+.+++|.+.+.+... +...|..-+..++.+...+.++.+.|.++.+++.+++++.-+|..+|-....++..+...
T Consensus 863 RfF~~ivP~l~~~~~t~---~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~ 939 (1030)
T KOG1967|consen 863 RFFCDIVPILVSKFETA---PGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTE 939 (1030)
T ss_pred HHHHhhHHHHHHHhccC---CccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHh
Confidence 36778999988877632 122345567778888878878889999999999999999989999999999999999999
Q ss_pred cccCcccchhhhHHHHHhhccCCCCCccCCCCCccccccCCCCCCCCchhhhhccccceeeecchhhhHHHHHHHHHHHH
Q 004960 577 LEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFA 656 (721)
Q Consensus 577 ~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~ 656 (721)
.+.-...+++.++|.+++.-+..+ +....+|..|+++++.+.
T Consensus 940 ~~tL~t~~~~Tlvp~lLsls~~~~--------------------------------------n~~~~VR~~ALqcL~aL~ 981 (1030)
T KOG1967|consen 940 SETLQTEHLSTLVPYLLSLSSDND--------------------------------------NNMMVVREDALQCLNALT 981 (1030)
T ss_pred ccccchHHHhHHHHHHHhcCCCCC--------------------------------------cchhHHHHHHHHHHHHHh
Confidence 999899999999999996432111 112457999999999999
Q ss_pred HHcc-ccccchHHHHHHHHHhcccCCChhHHHHHHHHHHHH
Q 004960 657 LHTK-SSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNI 696 (721)
Q Consensus 657 ~~~~-~~~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l 696 (721)
...| ..+.||-+++++.|.+.++|+..-||+.|+.+=..+
T Consensus 982 ~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen 982 RRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNW 1022 (1030)
T ss_pred ccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhh
Confidence 9887 678899999999999999999999999998875554
No 84
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=0.00035 Score=72.56 Aligned_cols=238 Identities=17% Similarity=0.194 Sum_probs=150.3
Q ss_pred hHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhc-----CCCCHhHHHHHHHH-HHHHHhhhhH--HHHHhh-hhHHHH
Q 004960 353 YREAAVTAIGIISEGCAEWMKEKLESVLHIVLGAL-----RDPEQFVRGAASFA-LGQFAEYLQP--EIVSHY-ESVLPC 423 (721)
Q Consensus 353 ~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l-----~d~~~~vr~~a~~~-l~~l~~~~~~--~~~~~~-~~~l~~ 423 (721)
.|-+|=..+..+.+..++.+.|.+-+.+....... +|-+..+++.|..+ .|.-+..+.+ .+.+-+ +.++|.
T Consensus 413 lRPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~~dF~~Wl~~~llpE 492 (978)
T KOG1993|consen 413 LRPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNILDFDKWLQEALLPE 492 (978)
T ss_pred cchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhCHH
Confidence 35555555555555444444444433333333333 23344455544443 3333333222 112222 334444
Q ss_pred HHHhccCCChHHHHHHHHHHHHHHHhh-hhccccchHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHh---hhcchhh
Q 004960 424 ILNALEDESDEVKEKSYYALAAFCEDM-GEEILPFLDPLMGKLLAALENS-PRNLQETCMSAIGSVAAAA---EQAFIPY 498 (721)
Q Consensus 424 l~~~l~~~~~~v~~~a~~al~~l~~~~-~~~~~~~~~~i~~~l~~~l~~~-~~~v~~~~l~~l~~l~~~~---~~~~~~~ 498 (721)
+. .-.....-+|.+.++.++.-++.- +.++ -+.+...+.+++++. +.-|+-.+..++..++.-. ++.|.||
T Consensus 493 l~-~~~~~~RiiRRRVa~ilg~Wvsvq~~~e~---k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~ 568 (978)
T KOG1993|consen 493 LA-NDHGNSRIIRRRVAWILGQWVSVQQKLEL---KPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPY 568 (978)
T ss_pred hh-hcccchhHHHHHHHHHHhhhhheechHhH---HHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhh
Confidence 43 111222347899999999887632 2222 234556677778877 6778888888888887654 5789999
Q ss_pred HHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccC--CCChhhHHHHHHHHHHHHHH
Q 004960 499 AERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFG--LEFSELREYTHGFFSNIAGV 576 (721)
Q Consensus 499 ~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~--~~~~~~~~~~~~~l~~l~~~ 576 (721)
++.+...+.+++.... +-+.|...+.+++.+...+++ .+.|++..+++.+=..+. .+.+-+|.+.+.++.+++..
T Consensus 569 lenlf~~lfkll~~~~--e~Dtk~~VL~~ls~lI~r~~e-~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~a 645 (978)
T KOG1993|consen 569 LENLFVLLFKLLKAVE--ECDTKTSVLNLLSTLIERVSE-HIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNA 645 (978)
T ss_pred HHHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHH
Confidence 9999998888886542 233456788999999888865 777888888888766665 34666899999999999999
Q ss_pred cccCcccchhhhHHHHHhhcc
Q 004960 577 LEDGFAQYLPLVVPLAFSSCN 597 (721)
Q Consensus 577 ~~~~~~~~l~~i~~~ll~~~~ 597 (721)
+|.+-.++.|-++|.+--++.
T Consensus 646 lg~qS~~~~~fL~pVIel~~D 666 (978)
T KOG1993|consen 646 LGAQSFEFYPFLYPVIELSTD 666 (978)
T ss_pred hccCCccchHHHHHHHHHhcC
Confidence 999877777777777755443
No 85
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=3.3e-05 Score=80.13 Aligned_cols=402 Identities=15% Similarity=0.121 Sum_probs=225.0
Q ss_pred CCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCCh
Q 004960 115 EWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDG 194 (721)
Q Consensus 115 ~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~ 194 (721)
.-..++|.+..+....|.+.+.....-+.......|.. .-..++.+.+-..| +++.+|..|+..++.+--
T Consensus 46 DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~----a~~avnt~~kD~~d-~np~iR~lAlrtm~~l~v----- 115 (734)
T KOG1061|consen 46 DVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDL----AILAVNTFLKDCED-PNPLIRALALRTMGCLRV----- 115 (734)
T ss_pred chHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchH----HHhhhhhhhccCCC-CCHHHHHHHhhceeeEee-----
Confidence 45678899999998888777776666666666554432 22334555666667 899999988887654321
Q ss_pred hhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 004960 195 AEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIIS 274 (721)
Q Consensus 195 ~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~ 274 (721)
..+...+..-+.+++.++++-+|+.+.-+...+....+..... ..++..+.+.+.++ ++.+-..|+..+.
T Consensus 116 ------~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~--~gl~~~L~~ll~D~--~p~VVAnAlaaL~ 185 (734)
T KOG1061|consen 116 ------DKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVED--SGLVDALKDLLSDS--NPMVVANALAALS 185 (734)
T ss_pred ------hHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccc--cchhHHHHHHhcCC--CchHHHHHHHHHH
Confidence 2233334444455888899999999988888887776654432 22333333344433 6778888888888
Q ss_pred HHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcCccc--cHhHHHHHHhhhcCCChh
Q 004960 275 WLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHV--FPPVFEFASVSCQNASPK 352 (721)
Q Consensus 275 ~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~--~~~i~~~l~~~l~~~~~~ 352 (721)
.+.+..+... ...+...++..++..+.+-. +|.. ...++.++...+++- ...+.+.+...+.+.+..
T Consensus 186 eI~e~~~~~~-~~~l~~~~~~~lL~al~ec~------EW~q----i~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~a 254 (734)
T KOG1061|consen 186 EIHESHPSVN-LLELNPQLINKLLEALNECT------EWGQ----IFILDCLAEYVPKDSREAEDICERLTPRLQHANSA 254 (734)
T ss_pred HHHHhCCCCC-cccccHHHHHHHHHHHHHhh------hhhH----HHHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcc
Confidence 8887665411 11344556666666555432 2322 245666666666322 345666666777777777
Q ss_pred hHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHH-------------------
Q 004960 353 YREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEI------------------- 413 (721)
Q Consensus 353 ~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~------------------- 413 (721)
..-++...+-......+......+.++-+.+...+..+. .+...|+.=+..+....+..+
T Consensus 255 vvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~ 333 (734)
T KOG1061|consen 255 VVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKL 333 (734)
T ss_pred eEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHH
Confidence 777777777777766555444445555566666655444 666666655555544433211
Q ss_pred -----------HHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCChhHHHHHHH
Q 004960 414 -----------VSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMS 482 (721)
Q Consensus 414 -----------~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~ 482 (721)
...+.++++.+...-.+-+...-..+.+|+++++....+. ..+++.++.++......+...++.
T Consensus 334 eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-----~~cv~~lLell~~~~~yvvqE~~v 408 (734)
T KOG1061|consen 334 EKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----NDCVSILLELLETKVDYVVQEAIV 408 (734)
T ss_pred HHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----hhhHHHHHHHHhhcccceeeehhH
Confidence 1123344444444444444444556777777776555432 456666666666554444444444
Q ss_pred HHHHHHHHhhhcchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCChhh
Q 004960 483 AIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSEL 562 (721)
Q Consensus 483 ~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~ 562 (721)
.+..+...+++. ++.+++.+...+...+++ +.|...+-.+|.-+.. .+..+.+++.+++.+.++...+
T Consensus 409 vi~dilRkyP~~----~~~vv~~l~~~~~sl~ep--eak~amiWilg~y~~~------i~~a~elL~~f~en~~dE~~~V 476 (734)
T KOG1061|consen 409 VIRDILRKYPNK----YESVVAILCENLDSLQEP--EAKAALIWILGEYAER------IENALELLESFLENFKDETAEV 476 (734)
T ss_pred HHHhhhhcCCCc----hhhhhhhhcccccccCCh--HHHHHHHHHHhhhhhc------cCcHHHHHHHHHhhcccchHHH
Confidence 555554444432 233333333333222222 2233333333443322 2334555666666565555544
Q ss_pred HHH
Q 004960 563 REY 565 (721)
Q Consensus 563 ~~~ 565 (721)
+-.
T Consensus 477 ql~ 479 (734)
T KOG1061|consen 477 QLE 479 (734)
T ss_pred HHH
Confidence 433
No 86
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.76 E-value=0.00025 Score=77.03 Aligned_cols=112 Identities=21% Similarity=0.242 Sum_probs=77.8
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhcC--C---CHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHc-cc
Q 004960 37 VPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAK--L---SPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAK-YA 110 (721)
Q Consensus 37 ~~~l~~il~~~~~~~vr~~a~~~l~~~i~~~w~~--~---~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~-~~ 110 (721)
+..++..+ +..+-..|..-...+-+.+...... . ..+.+..+.+.+.+-+. |.+..+|..+-+++..+.+ +.
T Consensus 314 l~~lv~ll-d~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~-Dvsa~vRskVLqv~~~l~~~~s 391 (1251)
T KOG0414|consen 314 LTLLVDLL-DSESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRERLL-DVSAYVRSKVLQVFRRLFQQHS 391 (1251)
T ss_pred HHHHHHhc-CCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhh-cccHHHHHHHHHHHHHHHHccC
Confidence 33444433 3345667776666666766543321 1 11222233344444444 6899999999999999986 45
Q ss_pred cCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhh
Q 004960 111 VPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIG 150 (721)
Q Consensus 111 ~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~ 150 (721)
.|.+.|.+++......+.+.+.-+|..|+..+..+....|
T Consensus 392 ~p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~~P 431 (1251)
T KOG0414|consen 392 IPLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLDRHP 431 (1251)
T ss_pred CCccHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcCC
Confidence 5667999999999999999999999999999999887654
No 87
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.69 E-value=1.7e-05 Score=78.68 Aligned_cols=313 Identities=17% Similarity=0.131 Sum_probs=182.8
Q ss_pred HHHHHHHHHhhhhhhcCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHH
Q 004960 54 QLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEE 133 (721)
Q Consensus 54 ~~a~~~l~~~i~~~w~~~~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~ 133 (721)
+.|.+.+-+.+...... +++...+++..|-.++.+ .-..|.-.+|.++..++........+...+..|..++++....
T Consensus 241 q~a~V~lvr~~~~ll~~-n~q~~~q~rpfL~~wls~-k~emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~ 318 (898)
T COG5240 241 QLAGVLLVRATVELLKE-NSQALLQLRPFLNSWLSD-KFEMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVV 318 (898)
T ss_pred chhheehHHHHHHHHHh-ChHHHHHHHHHHHHHhcC-cchhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHH
Confidence 44455555554433222 456677777777777763 5677788888888887765432235566788888899999999
Q ss_pred HHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHH
Q 004960 134 HREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQ 213 (721)
Q Consensus 134 ~~~~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~ 213 (721)
.|..|++++.+++...|...... -+-+..+++| .|..+ +..++..++....+ +.+.++-..+|.+++
T Consensus 319 ~rFsA~Riln~lam~~P~kv~vc----N~evEsLIsd-~Nr~I---styAITtLLKTGt~-e~idrLv~~I~sfvh---- 385 (898)
T COG5240 319 LRFSAMRILNQLAMKYPQKVSVC----NKEVESLISD-ENRTI---STYAITTLLKTGTE-ETIDRLVNLIPSFVH---- 385 (898)
T ss_pred HHHHHHHHHHHHHhhCCceeeec----ChhHHHHhhc-ccccc---hHHHHHHHHHcCch-hhHHHHHHHHHHHHH----
Confidence 99999999999998776543221 1223445556 45444 44455555554422 234444445555554
Q ss_pred HhhcCCHHHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHH
Q 004960 214 CLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPI 293 (721)
Q Consensus 214 ~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~i 293 (721)
-+.++-.-+...|++. +.-..|..-. ..+.++...+.++. .-+.+..+++.+..++++.|.. -+..
T Consensus 386 D~SD~FKiI~ida~rs---Lsl~Fp~k~~----s~l~FL~~~L~~eG-g~eFK~~~Vdaisd~~~~~p~s------kEra 451 (898)
T COG5240 386 DMSDGFKIIAIDALRS---LSLLFPSKKL----SYLDFLGSSLLQEG-GLEFKKYMVDAISDAMENDPDS------KERA 451 (898)
T ss_pred hhccCceEEeHHHHHH---HHhhCcHHHH----HHHHHHHHHHHhcc-cchHHHHHHHHHHHHHhhCchH------HHHH
Confidence 2232222233333333 3333332222 23333333332321 3456777888888777765543 1233
Q ss_pred HHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcCcccc-HhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHH
Q 004960 294 LQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVF-PPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWM 372 (721)
Q Consensus 294 l~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~-~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~ 372 (721)
+..+...+.+ ......+...|..+++..|..-- ...+.++...+--++...|.+|+.++..++-+..+.+
T Consensus 452 Le~LC~fIED---------cey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~ 522 (898)
T COG5240 452 LEVLCTFIED---------CEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVV 522 (898)
T ss_pred HHHHHHHHhh---------cchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccc
Confidence 3334333322 33456677788888877663111 1223333333333456789999999999887655443
Q ss_pred HHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHH
Q 004960 373 KEKLESVLHIVLGALRDPEQFVRGAASFALGQFA 406 (721)
Q Consensus 373 ~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~ 406 (721)
.+ ..+...+..+++|.+..||..|..++..+-
T Consensus 523 ~~--~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 523 SP--QSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred cH--HHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 33 245567778999999999999999888764
No 88
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.67 E-value=1.9e-07 Score=78.13 Aligned_cols=110 Identities=16% Similarity=0.194 Sum_probs=91.8
Q ss_pred HHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHH-HHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHh
Q 004960 338 VFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLE-SVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSH 416 (721)
Q Consensus 338 i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 416 (721)
+++.+.+.+.+.+|..|..++.+++.++...+......+. .+++.+.+.++++++.++..++++|++++...+......
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 5666666777888999999999999999886655555554 889999999999999999999999999998765433333
Q ss_pred h-hhHHHHHHHhccCCChHHHHHHHHHHHHHH
Q 004960 417 Y-ESVLPCILNALEDESDEVKEKSYYALAAFC 447 (721)
Q Consensus 417 ~-~~~l~~l~~~l~~~~~~v~~~a~~al~~l~ 447 (721)
. .++++.+.+.+.+.+..++..++++|.+++
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 3 468999999999999999999999999886
No 89
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=98.67 E-value=0.00083 Score=69.46 Aligned_cols=213 Identities=19% Similarity=0.241 Sum_probs=127.8
Q ss_pred hHHHHHHHHHh--hcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChH------------HHHHHH
Q 004960 375 KLESVLHIVLG--ALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDE------------VKEKSY 440 (721)
Q Consensus 375 ~l~~i~~~l~~--~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~------------v~~~a~ 440 (721)
+++.++..++. ++.+.+..||..|.+...++.+.+...+.++.+.++..+...|+...+. -+....
T Consensus 530 ~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL~~~vtt~N~~s~~lt~fddqlyIf 609 (980)
T KOG2021|consen 530 KIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLLHIKVTTINAQSDNLTIFDDQLYIF 609 (980)
T ss_pred hhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCcCccccccccccccceee
Confidence 34444444443 4567899999999999999999998888888888888887777432211 122233
Q ss_pred HHHHHHHHhh-----------hhccccchHHH-HHHHHHhhcCC-ChhH-H---HHHHHHHHHHHHHhhhc---------
Q 004960 441 YALAAFCEDM-----------GEEILPFLDPL-MGKLLAALENS-PRNL-Q---ETCMSAIGSVAAAAEQA--------- 494 (721)
Q Consensus 441 ~al~~l~~~~-----------~~~~~~~~~~i-~~~l~~~l~~~-~~~v-~---~~~l~~l~~l~~~~~~~--------- 494 (721)
.+++-++... ..-+.|...+. +..+...+.+. +..+ . ..++-+++++++.....
T Consensus 610 EtiGviI~l~n~paE~qaay~~~litpl~~~~~igl~~a~lasde~~pv~Ia~c~~~lmaig~lakgf~~rlvt~~qvg~ 689 (980)
T KOG2021|consen 610 ETIGVIITLNNSPAELQAAYANTLITPLILDQIIGLLFAQLASDEASPVVIAECHHILMAIGTLAKGFHIRLVTENQVGN 689 (980)
T ss_pred ecceEEEeCCCCCHHHHHHHHhcccChHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHhhcccccCcchhcccH
Confidence 3333333221 11222333322 22222223322 2111 1 23445666666544321
Q ss_pred ---chhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCChhhHHHHHHHHH
Q 004960 495 ---FIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFS 571 (721)
Q Consensus 495 ---~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~ 571 (721)
|..-++.+++.+.... ....+|+..--+++.+...+|+ .+.|+++++++.+++. .+..-....+.+++
T Consensus 690 ~~vf~~~ldvil~~ls~f~-----k~E~iRsavrft~hRmI~~lg~-~vlPfipklie~lL~s---~d~kEmvdfl~fls 760 (980)
T KOG2021|consen 690 MVVFSNILDVILVTLSFFN-----KFENIRSAVRFTFHRMIPILGN-KVLPFIPKLIELLLSS---TDLKEMVDFLGFLS 760 (980)
T ss_pred HHHHHHHHHHHHHHHhhcc-----ccchhHHHHHHHHHHHHHhcch-hhhcchHHHHHHHHhc---CCHHHHHHHHHHHH
Confidence 1222333333332221 1124677777788888888887 7789999999988663 34444445788999
Q ss_pred HHHHHcccCcccchhhhHHHHHhhc
Q 004960 572 NIAGVLEDGFAQYLPLVVPLAFSSC 596 (721)
Q Consensus 572 ~l~~~~~~~~~~~l~~i~~~ll~~~ 596 (721)
.+...+..+..+++.+++|.++..+
T Consensus 761 QLihkfk~~~~~ilnqmlppll~rI 785 (980)
T KOG2021|consen 761 QLIHKFKTDCYQILNQMLPPLLNRI 785 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988665
No 90
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.66 E-value=0.00016 Score=73.58 Aligned_cols=477 Identities=14% Similarity=0.100 Sum_probs=240.6
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHh-c-CC--------CcHHHHHHHHhc-CCChhHHHHHHHHHHHhhhhhhcCCCHH
Q 004960 6 ELLLIQFLMPDNDARRQAEDQIKRLA-K-DP--------QVVPALVQHLRT-AKTPNVRQLAAVLLRKKITGHWAKLSPQ 74 (721)
Q Consensus 6 ~~ll~~~~s~d~~~r~~A~~~L~~~~-~-~p--------~~~~~l~~il~~-~~~~~vr~~a~~~l~~~i~~~w~~~~~~ 74 (721)
..++..+.++|+++.=+|--....+. . ++ +.+..++..+.. +..+..+.-.+.++...+.+.-..+.+-
T Consensus 12 ~~~l~~L~~~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~sv 91 (678)
T KOG1293|consen 12 LDLLYRLLHLDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSV 91 (678)
T ss_pred HHHHHhhhcCCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHH
Confidence 35667778888888666655554332 2 11 345667766654 3345555444445555544432233344
Q ss_pred HHHHHHHHHHHHHhhcCC-HHHHHHHHHHHHHHHccccCC-----CCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhh
Q 004960 75 LKQLVKQSLIESITLEHS-APVRRASANVVSIIAKYAVPA-----GEWPDLLPFLFQFSQSEQEEHREVALILFSSLTET 148 (721)
Q Consensus 75 ~~~~i~~~ll~~l~~e~~-~~vr~~~~~~l~~i~~~~~~~-----~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~ 148 (721)
.....-..+++.+.+ ++ ..++.....++..|....... ..-..+++.+.-...-+.......-.......+..
T Consensus 92 L~~~~ll~Ll~LLs~-sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~ 170 (678)
T KOG1293|consen 92 LRIIELLKLLQLLSE-SDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSST 170 (678)
T ss_pred HHHhhHHHHHHHhcC-cchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccccc
Confidence 444555678888874 67 889999999999998754211 11233444444333311111111111111111111
Q ss_pred hhhcccccHHHHHHHHHHhhCCCCCHHHHHHHHHHHH---HhhhhcCChhhHHH-----HHhhHHHHHHHHHHHhhcCCH
Q 004960 149 IGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIG---SFLEFTNDGAEVVK-----FREFIPSILNVSRQCLASGEE 220 (721)
Q Consensus 149 ~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~---~l~~~~~~~~~~~~-----~~~~l~~ll~~l~~~l~~~~~ 220 (721)
...+..-.-..+.+.+.-++.. -+..+|.+|+.++. +++...+. ..... ...+.+++ ...+..++++.
T Consensus 171 ~~hq~Il~Na~i~ekI~~l~~~-~s~~~RlaaL~~~sr~~~iL~Nn~~-~sm~~l~~L~d~~v~~r~--~v~rL~k~~~~ 246 (678)
T KOG1293|consen 171 KDHQLILCNAGILEKINILLMY-LSSKLRLAALLCLSRGDRILRNNPL-GSMFLLGLLKDKGVNIRC--VVTRLLKDPDF 246 (678)
T ss_pred chhhheeccccchhhHHHHHHh-hhHHHHHHHHHHhhccceeeecCch-hHHHHHHHHhccccchhh--hhhhhhhCCCc
Confidence 1111111112222222222323 45689999999998 44433211 11111 11222221 22335566777
Q ss_pred HHHHHHHHHHHHHhcCc--------ccchhhhHH-HHHHH-HHHhhcCCCCC-hHHHHHHHHHHHHHHHHhHhhhhhcCC
Q 004960 221 DVAVIAFEIFDELIESP--------APLLGDSVK-SIVHF-SLEVSSSHNLE-PNTRHQAIQIISWLAKYKYNSLKKHKL 289 (721)
Q Consensus 221 ~~~~~a~~~l~~l~~~~--------~~~~~~~~~-~l~~~-~~~~~~~~~~~-~~~r~~a~~~l~~l~~~~~~~~~~~~~ 289 (721)
..+..++.++..+.... +..+.+.-. .++.. ++....++-+. .++.......+..+++.-........-
T Consensus 247 s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~ 326 (678)
T KOG1293|consen 247 SERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEAT 326 (678)
T ss_pred cHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhh
Confidence 77888888888887654 122221111 11111 11111111110 011111111111222211110000001
Q ss_pred hHHHHHHHHhhhccCCCCCCCCCCcHHHHHHH--HHHHHHHHcC----ccccH-hHHHHHHhhhcCCChhhHhHHHHHHH
Q 004960 290 VIPILQVMCPLLAESNEAGEDDDLAPDRAAAE--VIDTMALNLA----KHVFP-PVFEFASVSCQNASPKYREAAVTAIG 362 (721)
Q Consensus 290 ~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~--~l~~l~~~~~----~~~~~-~i~~~l~~~l~~~~~~~r~~al~~l~ 362 (721)
.+.....++. ..+-... ++....-.+.+ .+...+...+ +++.. .+...+....-..+...+.+|+.++.
T Consensus 327 ~~~~~ellf~-~~sl~a~---~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~ 402 (678)
T KOG1293|consen 327 LKTTTELLFI-CASLAAS---DEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLK 402 (678)
T ss_pred hhhHHHHHHH-HHHHhhc---chhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHH
Confidence 1112221211 1110000 00000011111 1112222221 11111 11222222223346678889998888
Q ss_pred HHhhccHHHH-HHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhh-hhHHHHHHHhccCCChHHHHHHH
Q 004960 363 IISEGCAEWM-KEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY-ESVLPCILNALEDESDEVKEKSY 440 (721)
Q Consensus 363 ~i~~~~~~~~-~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~l~~l~~~l~~~~~~v~~~a~ 440 (721)
.++......- ...-.++...+++.+.||+..|...++-++.++.-.+++.-..++ .+.+..+.+.+.+++..+|..+.
T Consensus 403 s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~ 482 (678)
T KOG1293|consen 403 SFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSL 482 (678)
T ss_pred HHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHH
Confidence 8776533211 122346667778888999999999999999999887766444555 57899999999999999999999
Q ss_pred HHHHHHHHhhhhc--cccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHh
Q 004960 441 YALAAFCEDMGEE--ILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAA 491 (721)
Q Consensus 441 ~al~~l~~~~~~~--~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~ 491 (721)
|+|.++.-.+++. ..++-.--.+.+....+++++.|+++++..+.++....
T Consensus 483 ~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~ 535 (678)
T KOG1293|consen 483 WVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNS 535 (678)
T ss_pred HHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCc
Confidence 9999998887643 33555556667778888999999999999998886543
No 91
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=6.1e-05 Score=78.53 Aligned_cols=372 Identities=14% Similarity=0.173 Sum_probs=218.5
Q ss_pred hHHHHHHhccCC-cHHHHHHHHHHHHHhhhhh----hhccc-ccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcC
Q 004960 119 LLPFLFQFSQSE-QEEHREVALILFSSLTETI----GQTFR-PHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTN 192 (721)
Q Consensus 119 ll~~l~~~l~~~-~~~~~~~al~~l~~i~~~~----~~~~~-~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~ 192 (721)
=+..|++.++.. ++..+ +..+.++|+.. .+.+. --++.++|.+..+++++.+.++...|++|+..+++..+
T Consensus 168 k~kkLL~gL~~~~Des~Q---leal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP 244 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQ---LEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLP 244 (1051)
T ss_pred HHHHHHHhccccCChHHH---HHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhcc
Confidence 355666666655 44433 44444444432 12222 13588999999999997899999999999999999987
Q ss_pred ChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcccch-h-hhHHHHHHHHHHhhcCCCCChHHHHHHH
Q 004960 193 DGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLL-G-DSVKSIVHFSLEVSSSHNLEPNTRHQAI 270 (721)
Q Consensus 193 ~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~-~-~~~~~l~~~~~~~~~~~~~~~~~r~~a~ 270 (721)
...........+|.+++.|... ..-+++.++++.+..+...++.-+ + ..+...+.++ +. .+..+++.|+
T Consensus 245 ~S~a~vV~~~aIPvl~~kL~~I---eyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~Lsyl-DF-----FSi~aQR~Al 315 (1051)
T KOG0168|consen 245 RSSAIVVDEHAIPVLLEKLLTI---EYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYL-DF-----FSIHAQRVAL 315 (1051)
T ss_pred chhheeecccchHHHHHhhhhh---hhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHH-HH-----HHHHHHHHHH
Confidence 6544333345788888765433 577899999999999987765432 1 1122222221 11 1455788899
Q ss_pred HHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcC--cccc-----HhHHHHHH
Q 004960 271 QIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA--KHVF-----PPVFEFAS 343 (721)
Q Consensus 271 ~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~--~~~~-----~~i~~~l~ 343 (721)
.+..++|+..+.. ..+++...++.+.+++.+.+ ..+-.....|+.+++..+. .+.+ ..++..+.
T Consensus 316 aiaaN~Cksi~sd--~f~~v~ealPlL~~lLs~~D-------~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~ 386 (1051)
T KOG0168|consen 316 AIAANCCKSIRSD--EFHFVMEALPLLTPLLSYQD-------KKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQ 386 (1051)
T ss_pred HHHHHHHhcCCCc--cchHHHHHHHHHHHHHhhcc-------chhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHH
Confidence 8888888754322 12467788888999998865 3455556667777766554 2222 23444444
Q ss_pred hhhcCC----ChhhHhHHHHHHHHHhhccHHHHHHh-HHHHHHHHHhhcC----CCC-----HhHH--HHHHHH------
Q 004960 344 VSCQNA----SPKYREAAVTAIGIISEGCAEWMKEK-LESVLHIVLGALR----DPE-----QFVR--GAASFA------ 401 (721)
Q Consensus 344 ~~l~~~----~~~~r~~al~~l~~i~~~~~~~~~~~-l~~i~~~l~~~l~----d~~-----~~vr--~~a~~~------ 401 (721)
+.+.-. +.....+-+.++..++.+++...... ..+|...+...|. ..+ +..| ..-+..
T Consensus 387 qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~e 466 (1051)
T KOG0168|consen 387 QLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIE 466 (1051)
T ss_pred HHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHhe
Confidence 443211 22344555666666666655322211 1112222222211 000 0000 000011
Q ss_pred ---------------------------------------------HHHHHh--------------------------hhh
Q 004960 402 ---------------------------------------------LGQFAE--------------------------YLQ 410 (721)
Q Consensus 402 ---------------------------------------------l~~l~~--------------------------~~~ 410 (721)
..++.+ .-+
T Consensus 467 Llp~~p~e~i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqp 546 (1051)
T KOG0168|consen 467 LLPCLPVEGIFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQP 546 (1051)
T ss_pred eecCCcccceeehhhhhhcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCH
Confidence 111111 011
Q ss_pred HHHHHhhhhHHHHHHHhccCC-ChHHHHHHHHHHHHHHHhhhhcc-ccchH--HHHHHHHHhhcCCChhHHHHHHHHHHH
Q 004960 411 PEIVSHYESVLPCILNALEDE-SDEVKEKSYYALAAFCEDMGEEI-LPFLD--PLMGKLLAALENSPRNLQETCMSAIGS 486 (721)
Q Consensus 411 ~~~~~~~~~~l~~l~~~l~~~-~~~v~~~a~~al~~l~~~~~~~~-~~~~~--~i~~~l~~~l~~~~~~v~~~~l~~l~~ 486 (721)
+.++.+...++|.|++...+. ++.||..++.||.+++......+ ...+. .+-..+..++...+..+.-.++.....
T Consensus 547 el~q~F~~~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEi 626 (1051)
T KOG0168|consen 547 ELLQSFGKDLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEI 626 (1051)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHH
Confidence 223456678888888887755 67899999999999887664322 12111 333445566777777777788888888
Q ss_pred HHHHhhhcchhhHHH--HHHHHHHHHh
Q 004960 487 VAAAAEQAFIPYAER--VLELLKIFMV 511 (721)
Q Consensus 487 l~~~~~~~~~~~~~~--i~~~l~~~l~ 511 (721)
+.+..++.|.+++-. ++-.+.++..
T Consensus 627 LmeKlpd~F~~~F~REGV~~~v~~L~~ 653 (1051)
T KOG0168|consen 627 LMEKLPDTFSPSFRREGVFHAVKQLSV 653 (1051)
T ss_pred HHHHhHHHhhhhHhhhhHHHHHHHHhc
Confidence 888999999887543 6666666554
No 92
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.64 E-value=0.001 Score=68.92 Aligned_cols=373 Identities=14% Similarity=0.147 Sum_probs=200.6
Q ss_pred HHhcCCChHHHHHHHHHH-HHHhcCCCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhcCCCH--------HHHHHHH
Q 004960 10 IQFLMPDNDARRQAEDQI-KRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSP--------QLKQLVK 80 (721)
Q Consensus 10 ~~~~s~d~~~r~~A~~~L-~~~~~~p~~~~~l~~il~~~~~~~vr~~a~~~l~~~i~~~w~~~~~--------~~~~~i~ 80 (721)
+.+-+.|.+.+-.|-+.+ ..+.+-..+-..+..|+.--- .+| -..||+.+-.+|+-+|- ++..-+.
T Consensus 27 ~~Lek~~~~~KIeamK~ii~~mlnGe~~p~Llm~IiRfvl--ps~---~~elKKLly~ywE~vPKt~~dgkl~~EMILvc 101 (948)
T KOG1058|consen 27 EKLEKGDDEVKIEAMKKIIALMLNGEDLPSLLMTIIRFVL--PSR---NHELKKLLYYYWELVPKTDSDGKLLHEMILVC 101 (948)
T ss_pred HHHhcCChHHHHHHHHHHHHHHHcCCCchHHHHHHhheee--ccC---chHHHHHHHHHHHHccccCCCcccHHHHHHHH
Confidence 344455555555554444 445554455555555554210 011 12356667777875431 1111222
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccccHHHH
Q 004960 81 QSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADM 160 (721)
Q Consensus 81 ~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~l 160 (721)
+.+-.-|.. |+..+|-..-..+..+-. | +....++|.+.+++...+.-+|..|..++..|.+.. +.+.+..+++
T Consensus 102 na~RkDLQH-PNEyiRG~TLRFLckLkE---~-ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~-~~L~pDapeL 175 (948)
T KOG1058|consen 102 NAYRKDLQH-PNEYIRGSTLRFLCKLKE---P-ELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNF-EHLIPDAPEL 175 (948)
T ss_pred HHHhhhccC-chHhhcchhhhhhhhcCc---H-HHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhh-hhhcCChHHH
Confidence 333333443 788888544444443332 3 246678999999999999899999999999888763 3333445555
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHH------------hhhhcCChhh-----------------HHHHHhhHHHHHHHH
Q 004960 161 QALLLKCLQDETSNRVRIAALKAIGS------------FLEFTNDGAE-----------------VVKFREFIPSILNVS 211 (721)
Q Consensus 161 ~~~l~~~l~~~~~~~vr~~a~~~l~~------------l~~~~~~~~~-----------------~~~~~~~l~~ll~~l 211 (721)
+.-++.. + .++.-+..|+-.|.. .+...++-.+ ...-..++..+++.|
T Consensus 176 i~~fL~~--e-~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL 252 (948)
T KOG1058|consen 176 IESFLLT--E-QDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLL 252 (948)
T ss_pred HHHHHHh--c-cCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHH
Confidence 5443322 2 444444444333321 1111110000 000012222333322
Q ss_pred HHH--------h-----hcCCHHHHHHHHHHHHHHhcCccc----c------------hhhhHHHHHHHHHHhhcCCCCC
Q 004960 212 RQC--------L-----ASGEEDVAVIAFEIFDELIESPAP----L------------LGDSVKSIVHFSLEVSSSHNLE 262 (721)
Q Consensus 212 ~~~--------l-----~~~~~~~~~~a~~~l~~l~~~~~~----~------------~~~~~~~l~~~~~~~~~~~~~~ 262 (721)
... . -+.+|...+.|..++.+++...+. . -...+..++--.+..++.+ +
T Consensus 253 ~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~--d 330 (948)
T KOG1058|consen 253 SSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSP--D 330 (948)
T ss_pred hcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcc--c
Confidence 110 0 012344455555555555443211 0 0111222222233344445 4
Q ss_pred hHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcCccccHhHHHHH
Q 004960 263 PNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFA 342 (721)
Q Consensus 263 ~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~i~~~l 342 (721)
-++|..++.+...+++. .-+..++..+-.-+....+.+.++....|......+...+-.+++ +...+++.+
T Consensus 331 ldvr~Ktldi~ldLvss--------rNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~-~aatvV~~l 401 (948)
T KOG1058|consen 331 LDVRSKTLDIALDLVSS--------RNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPE-VAATVVSLL 401 (948)
T ss_pred ccHHHHHHHHHHhhhhh--------ccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChH-HHHHHHHHH
Confidence 45777777766666643 235566666665555554444445556677777777777776664 667788999
Q ss_pred HhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhh
Q 004960 343 SVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQ 410 (721)
Q Consensus 343 ~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 410 (721)
.+.+.+.+...-.+.+.++....+..++.-...+..++..+-. -.+..+-..|+|.+|.+++...
T Consensus 402 l~fisD~N~~aas~vl~FvrE~iek~p~Lr~~ii~~l~~~~~~---irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 402 LDFISDSNEAAASDVLMFVREAIEKFPNLRASIIEKLLETFPQ---IRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred HHHhccCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhhhh---hcccccchhHHHHHHHHHhhhH
Confidence 9999999888888888888888887776544444444433322 2355677889999999998765
No 93
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=0.0012 Score=68.75 Aligned_cols=377 Identities=14% Similarity=0.129 Sum_probs=192.1
Q ss_pred HHHHHHHHHHHHHHcc-ccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCC
Q 004960 94 PVRRASANVVSIIAKY-AVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDET 172 (721)
Q Consensus 94 ~vr~~~~~~l~~i~~~-~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~l~~~~ 172 (721)
..+..+..++-.+... .++...-.+++=.+..++++.+.-.|.....+++.+..-..+. --+...+.+-.+. .
T Consensus 39 ~c~~~lskllyll~qge~~~~~eate~ff~~tKlfQskd~~LRr~vYl~Ikels~isedv-----iivtsslmkD~t~-~ 112 (865)
T KOG1078|consen 39 KCRHILSKLLYLLNQGEHFGETEATELFFAITKLFQSKDVSLRRMVYLAIKELSKISEDV-----IIVTSSLMKDMTG-K 112 (865)
T ss_pred HHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHhhcCHHHHHHHHHHHhhccccchhh-----hhhhHHHHhhccC-C
Confidence 3444444555445443 3333345667777888889999888888877777765332211 1122333334444 5
Q ss_pred CHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcccchhhhHHHHHHHH
Q 004960 173 SNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFS 252 (721)
Q Consensus 173 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~ 252 (721)
++..|..|+..|..++... .++.+=.++.+++-+.++.+...|+-.=..+....+ ..+..|
T Consensus 113 ~d~yr~~AiR~L~~I~d~~-----------m~~~iery~kqaivd~~~avSsaalvss~hll~~~~--------~~vkrw 173 (865)
T KOG1078|consen 113 EDLYRAAAIRALCSIIDGT-----------MLQAIERYMKQAIVDKNPAVSSAALVSSYHLLPISF--------DVVKRW 173 (865)
T ss_pred CcchhHHHHHHHHhhcCcc-----------hhHHHHHHHHhHeeccccccchHHHHHHhhhhcccH--------HHHHHH
Confidence 6788999999998887643 222233333344545555554444322222222221 222222
Q ss_pred HHhhcC--CCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHH-HHH
Q 004960 253 LEVSSS--HNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTM-ALN 329 (721)
Q Consensus 253 ~~~~~~--~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l-~~~ 329 (721)
..-.+. ...+.-++++++.++..+.++.... +..++....+... .++ .|...+... +..
T Consensus 174 ~neiqea~~s~~~m~QyHalglLyqirk~drla------~sklv~~~~~~~~----------~~~--~A~~~lir~~~~~ 235 (865)
T KOG1078|consen 174 ANEVQEAVNSDNIMVQYHALGLLYQIRKNDRLA------VSKLVQKFTRGSL----------KSP--LAVCMLIRIASEL 235 (865)
T ss_pred HHhhhhccCcHHHHHHHHHHHHHHHHHhhhHHH------HHHHHHHHccccc----------cch--hHHHHHHHHHHHH
Confidence 211111 1113456788888888776543322 2222222222000 011 111111111 111
Q ss_pred cC--ccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHh
Q 004960 330 LA--KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAE 407 (721)
Q Consensus 330 ~~--~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 407 (721)
+. .....++++++...+.+.......-|..++..+....+..+.+ .+..+...++.+.+.+|.+|..+|.+++-
T Consensus 236 l~~~~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p----avs~Lq~flssp~~~lRfaAvRtLnkvAm 311 (865)
T KOG1078|consen 236 LKENQQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP----AVSVLQLFLSSPKVALRFAAVRTLNKVAM 311 (865)
T ss_pred hhhcccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch----HHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 11 2234567888888888777777777777776666655554444 56667777889999999999999999987
Q ss_pred hhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHH
Q 004960 408 YLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSV 487 (721)
Q Consensus 408 ~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l 487 (721)
..+..... .=..+-..+.|.+. .-+.-|+..+.....+ ...+.++..+.....+-+.+.+.-+.+++..+
T Consensus 312 ~~P~~v~~----cN~elE~lItd~Nr---sIat~AITtLLKTG~e---~sv~rLm~qI~~fv~disDeFKivvvdai~sL 381 (865)
T KOG1078|consen 312 KHPQAVTV----CNLDLESLITDSNR---SIATLAITTLLKTGTE---SSVDRLMKQISSFVSDISDEFKIVVVDAIRSL 381 (865)
T ss_pred hCCccccc----cchhHHhhhccccc---chhHHHHHHHHHhcch---hHHHHHHHHHHHHHHhccccceEEeHHHHHHH
Confidence 76532211 00111222234332 2333444444443322 23455555555555554444444555555555
Q ss_pred HHHhhhcchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHH
Q 004960 488 AAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAE 533 (721)
Q Consensus 488 ~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~ 533 (721)
+...+..- ...+++|...|.. +...+.+...++++..+..
T Consensus 382 c~~fp~k~----~~~m~FL~~~Lr~--eGg~e~K~aivd~Ii~iie 421 (865)
T KOG1078|consen 382 CLKFPRKH----TVMMNFLSNMLRE--EGGFEFKRAIVDAIIDIIE 421 (865)
T ss_pred HhhccHHH----HHHHHHHHHHHHh--ccCchHHHHHHHHHHHHHH
Confidence 55544322 2234444444433 1223444555666666553
No 94
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=98.59 E-value=0.0015 Score=69.57 Aligned_cols=164 Identities=11% Similarity=0.177 Sum_probs=114.9
Q ss_pred CCChHHHHHH-HHHHHHHhcCCCcHHHHHHHHhc--CCChhHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHHHHHHhhc
Q 004960 14 MPDNDARRQA-EDQIKRLAKDPQVVPALVQHLRT--AKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLE 90 (721)
Q Consensus 14 s~d~~~r~~A-~~~L~~~~~~p~~~~~l~~il~~--~~~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i~~~ll~~l~~e 90 (721)
|.+...|..| -+.+.++....++-..+.+++.+ ..+.++|++.-.++.++-+ ..|+..-...+.+..-+. +
T Consensus 30 s~n~~~kidAmK~iIa~M~~G~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak-----~~P~~~lLavNti~kDl~-d 103 (757)
T COG5096 30 SSNDYKKIDAMKKIIAQMSLGEDMSSLFPDVIKNVATRDVELKRLLYLYLERYAK-----LKPELALLAVNTIQKDLQ-D 103 (757)
T ss_pred ccChHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhc-----cCHHHHHHHHHHHHhhcc-C
Confidence 3334444444 55557777655555555555554 4688888888887777633 234445555566666666 5
Q ss_pred CCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCC
Q 004960 91 HSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQD 170 (721)
Q Consensus 91 ~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~l~~ 170 (721)
+++.+|-.+...++.+-.. ..|..+++.+.++++++++.+|..|..++..+.+..++.+.. .+...++..++.|
T Consensus 104 ~N~~iR~~AlR~ls~l~~~----el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~--~g~~~~l~~l~~D 177 (757)
T COG5096 104 PNEEIRGFALRTLSLLRVK----ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHE--LGLIDILKELVAD 177 (757)
T ss_pred CCHHHHHHHHHHHHhcChH----HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhc--ccHHHHHHHHhhC
Confidence 9999998888888877543 368899999999999999999999999999998765543221 1244555556667
Q ss_pred CCCHHHHHHHHHHHHHhhhh
Q 004960 171 ETSNRVRIAALKAIGSFLEF 190 (721)
Q Consensus 171 ~~~~~vr~~a~~~l~~l~~~ 190 (721)
++|.|...|+.++..+...
T Consensus 178 -~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 178 -SDPIVIANALASLAEIDPE 196 (757)
T ss_pred -CCchHHHHHHHHHHHhchh
Confidence 9999999999888776554
No 95
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.57 E-value=1e-05 Score=78.61 Aligned_cols=203 Identities=14% Similarity=0.135 Sum_probs=148.5
Q ss_pred HHHHHHhhhcCCChhhHhHHHH-HHHHHhhccHHHHHHhHHHHHHHHHhhcCC-CCHhHHHHHHHHHHHHHhhhhHHHHH
Q 004960 338 VFEFASVSCQNASPKYREAAVT-AIGIISEGCAEWMKEKLESVLHIVLGALRD-PEQFVRGAASFALGQFAEYLQPEIVS 415 (721)
Q Consensus 338 i~~~l~~~l~~~~~~~r~~al~-~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~ 415 (721)
+.+.+.+.-++.....|..|+. ..+.+.++.-....+++.+++..+++.+.| .++..+..|+..|+.+++.-+..+.+
T Consensus 288 v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~D 367 (516)
T KOG2956|consen 288 VADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFD 367 (516)
T ss_pred HHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhc
Confidence 4444444445556677888877 555666666667778899999999999998 89999999999999999998887777
Q ss_pred hhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhh-hhccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhh-h
Q 004960 416 HYESVLPCILNALEDESDEVKEKSYYALAAFCEDM-GEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAE-Q 493 (721)
Q Consensus 416 ~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~-~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~-~ 493 (721)
+-+-.+..+++.-.|..+.|-..|..+....+... +. .-+..+.+++.+.+......++..+..++.... +
T Consensus 368 stE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~-------~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~E 440 (516)
T KOG2956|consen 368 STEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPL-------QCIVNISPLILTADEPRAVAVIKMLTKLFERLSAE 440 (516)
T ss_pred hHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCch-------hHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHH
Confidence 87888888888888887776655555544444332 22 122334444444555555667777888887776 6
Q ss_pred cchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhccCChHHHHHH
Q 004960 494 AFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEA 550 (721)
Q Consensus 494 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~ 550 (721)
.+.+.++.+.|.+.+..+.. ...+|..++-|+-.+...+|.+.+.||+.++-..
T Consensus 441 eL~~ll~diaP~~iqay~S~---SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~s 494 (516)
T KOG2956|consen 441 ELLNLLPDIAPCVIQAYDST---SSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSS 494 (516)
T ss_pred HHHHhhhhhhhHHHHHhcCc---hHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHH
Confidence 67788999999988877543 4457889999999999999977999998764433
No 96
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=0.00041 Score=64.33 Aligned_cols=294 Identities=17% Similarity=0.183 Sum_probs=170.7
Q ss_pred HHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChh--hHHH--HHhhHHHHHHHHH
Q 004960 137 VALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGA--EVVK--FREFIPSILNVSR 212 (721)
Q Consensus 137 ~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~--~~~~--~~~~l~~ll~~l~ 212 (721)
.+..|+..+++.... ....+.+++.++.+|.. ++..|+..+++.++.+++....+. ++.. -..+++.++.
T Consensus 62 lcVscLERLfkakeg--ahlapnlmpdLQrGLia-ddasVKiLackqigcilEdcDtnaVseillvvNaeilklild--- 135 (524)
T KOG4413|consen 62 LCVSCLERLFKAKEG--AHLAPNLMPDLQRGLIA-DDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILD--- 135 (524)
T ss_pred hHHHHHHHHHhhccc--hhhchhhhHHHHhcccC-CcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHH---
Confidence 477888888776422 23457888999999988 888999999999999998775321 1111 2345666665
Q ss_pred HHhhcCCHHHHHHHHHHHHHHhcCccc---chhh-hHH--HHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhh
Q 004960 213 QCLASGEEDVAVIAFEIFDELIESPAP---LLGD-SVK--SIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKK 286 (721)
Q Consensus 213 ~~l~~~~~~~~~~a~~~l~~l~~~~~~---~~~~-~~~--~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~ 286 (721)
++..++.++.+.|++.+..++..... .|.. ... ++.+.... .++-.|...++.+..+.+.++.....
T Consensus 136 -cIggeddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaak------cndiaRvRVleLIieifSiSpesane 208 (524)
T KOG4413|consen 136 -CIGGEDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAK------CNDIARVRVLELIIEIFSISPESANE 208 (524)
T ss_pred -HHcCCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhh------hhhHHHHHHHHHHHHHHhcCHHHHhH
Confidence 77778999999999999998764211 1100 000 01111110 03345666677666666554443210
Q ss_pred cCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHc-CccccH--hHHHHHHhhhc--CCChhhHhHHHHHH
Q 004960 287 HKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNL-AKHVFP--PVFEFASVSCQ--NASPKYREAAVTAI 361 (721)
Q Consensus 287 ~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~-~~~~~~--~i~~~l~~~l~--~~~~~~r~~al~~l 361 (721)
- --..++..+..-|.-.+ |.-++....+....++..- +.++++ .+++.+...+. +.++..+..++..+
T Consensus 209 c-kkSGLldlLeaElkGte------DtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgf 281 (524)
T KOG4413|consen 209 C-KKSGLLDLLEAELKGTE------DTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGF 281 (524)
T ss_pred h-hhhhHHHHHHHHhcCCc------ceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHH
Confidence 0 01234444444444332 2334444555566665432 344443 35666666553 45677777788877
Q ss_pred HHHhhcc------HHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhH-H-HHHhhhhHHHHHHHhccCCC-
Q 004960 362 GIISEGC------AEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQP-E-IVSHYESVLPCILNALEDES- 432 (721)
Q Consensus 362 ~~i~~~~------~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~-~~~~~~~~l~~l~~~l~~~~- 432 (721)
+.+.... ++..-..+...+...++++...+|....+|..++|.+...... + ..+.-++-...++....+.+
T Consensus 282 gkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqna 361 (524)
T KOG4413|consen 282 GKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNA 361 (524)
T ss_pred HHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccc
Confidence 7766542 2333333455566667777788999999999999999876532 1 12222334444443333332
Q ss_pred hHHHHHHHHHHHHHHHhh
Q 004960 433 DEVKEKSYYALAAFCEDM 450 (721)
Q Consensus 433 ~~v~~~a~~al~~l~~~~ 450 (721)
..-+..++.+|.++....
T Consensus 362 hakqeaaihaLaaIagel 379 (524)
T KOG4413|consen 362 HAKQEAAIHALAAIAGEL 379 (524)
T ss_pred cchHHHHHHHHHHhhccc
Confidence 234566777777776544
No 97
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.52 E-value=2.6e-07 Score=64.04 Aligned_cols=55 Identities=38% Similarity=0.662 Sum_probs=52.4
Q ss_pred hhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHH
Q 004960 351 PKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQF 405 (721)
Q Consensus 351 ~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l 405 (721)
|..|.+|+++||.++...++...++.+.+++.+..+++|+++.||..|+++||++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 7899999999999999999999999999999999999999999999999999865
No 98
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.49 E-value=0.00028 Score=71.77 Aligned_cols=301 Identities=16% Similarity=0.150 Sum_probs=171.7
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCc
Q 004960 158 ADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESP 237 (721)
Q Consensus 158 ~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~ 237 (721)
..+...+.....+ .+..||..|++++..+-+...-+ +....... +.+.|++.++|++|++.+.-.....
T Consensus 197 ~~~~~~l~~~~~~-~D~~Vrt~A~eglL~L~eg~kL~------~~~Y~~A~----~~lsD~~e~VR~aAvqlv~v~gn~~ 265 (823)
T KOG2259|consen 197 EHAARGLIYLEHD-QDFRVRTHAVEGLLALSEGFKLS------KACYSRAV----KHLSDDYEDVRKAAVQLVSVWGNRC 265 (823)
T ss_pred HHHHHHHHHHhcC-CCcchHHHHHHHHHhhccccccc------HHHHHHHH----HHhcchHHHHHHHHHHHHHHHHhcC
Confidence 4445546666677 89999999999988776633211 22333333 3678889999999988877776655
Q ss_pred ccc---h---hhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCC------
Q 004960 238 APL---L---GDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESN------ 305 (721)
Q Consensus 238 ~~~---~---~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~------ 305 (721)
|.- . .......+....+.+.+ .+..+|..|.+.++.+-..+...+.+ .+-..++..+..+.
T Consensus 266 p~~~e~e~~e~kl~D~aF~~vC~~v~D--~sl~VRV~AaK~lG~~~~vSee~i~Q-----TLdKKlms~lRRkr~ahkrp 338 (823)
T KOG2259|consen 266 PAPLERESEEEKLKDAAFSSVCRAVRD--RSLSVRVEAAKALGEFEQVSEEIIQQ-----TLDKKLMSRLRRKRTAHKRP 338 (823)
T ss_pred CCcccchhhhhhhHHHHHHHHHHHHhc--CceeeeehHHHHhchHHHhHHHHHHH-----HHHHHHhhhhhhhhhcccch
Confidence 211 1 12223333333333333 35678888888888776543332211 11112222111000
Q ss_pred -CCCCCCCCcHHHHH-----HHHHHHHHHHcCccccH-hHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHH
Q 004960 306 -EAGEDDDLAPDRAA-----AEVIDTMALNLAKHVFP-PVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLES 378 (721)
Q Consensus 306 -~~~~~~~~~~~~~a-----~~~l~~l~~~~~~~~~~-~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~ 378 (721)
......+|+..+.. .+..+.-. ..+++ -.-..+...++++-..+|.+|+..++.++...+.+- ..
T Consensus 339 k~l~s~GewSsGk~~~advpsee~d~~~----~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA----~~ 410 (823)
T KOG2259|consen 339 KALYSSGEWSSGKEWNADVPSEEDDEEE----ESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFA----VR 410 (823)
T ss_pred HHHHhcCCcccCccccccCchhhccccc----cccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcH----HH
Confidence 00000011110000 00000000 00000 001122234556667899999999999998766542 34
Q ss_pred HHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccch
Q 004960 379 VLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFL 458 (721)
Q Consensus 379 i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~ 458 (721)
.+..+..+++|+...||..|..+|..++.... .-+..++.++..|.|.+.++|.+.- .++....-.-..-+
T Consensus 411 aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~-----i~eeql~~il~~L~D~s~dvRe~l~----elL~~~~~~d~~~i 481 (823)
T KOG2259|consen 411 ALDFLVDMFNDEIEVVRLKAIFALTMISVHLA-----IREEQLRQILESLEDRSVDVREALR----ELLKNARVSDLECI 481 (823)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe-----ecHHHHHHHHHHHHhcCHHHHHHHH----HHHHhcCCCcHHHH
Confidence 56788889999999999999999999988742 2245677778888899888987644 44444433333445
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhc
Q 004960 459 DPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQA 494 (721)
Q Consensus 459 ~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~~ 494 (721)
...+..++..+.... .-|..++.|++.+.+..+..
T Consensus 482 ~m~v~~lL~~L~kyP-qDrd~i~~cm~~iGqnH~~l 516 (823)
T KOG2259|consen 482 DMCVAHLLKNLGKYP-QDRDEILRCMGRIGQNHRRL 516 (823)
T ss_pred HHHHHHHHHHhhhCC-CCcHHHHHHHHHHhccChhh
Confidence 666677777666542 34678888998887765543
No 99
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.48 E-value=0.005 Score=69.14 Aligned_cols=400 Identities=13% Similarity=0.102 Sum_probs=203.1
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccccHHH
Q 004960 80 KQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFAD 159 (721)
Q Consensus 80 ~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~ 159 (721)
.+.++..+. |+...+|..+..|++.|+..+..--.-|++...+.+.+.+....+|++|+..+|..+-..++.. .+
T Consensus 818 Lk~Il~~l~-e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~----~q 892 (1692)
T KOG1020|consen 818 LKLILSVLG-ENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELI----FQ 892 (1692)
T ss_pred HHHHHHHhc-CchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHH----HH
Confidence 345566666 6889999999999999998764333568888889999988899999999999999887766543 44
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCccc
Q 004960 160 MQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAP 239 (721)
Q Consensus 160 l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~ 239 (721)
....+.+.+.| +...||+-+++.+..++...++ +. .++.+..-+..-..|+...+.+.+++.+..+=-...+
T Consensus 893 yY~~i~erIlD-tgvsVRKRvIKIlrdic~e~pd------f~-~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~ 964 (1692)
T KOG1020|consen 893 YYDQIIERILD-TGVSVRKRVIKILRDICEETPD------FS-KIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVP 964 (1692)
T ss_pred HHHHHHhhcCC-CchhHHHHHHHHHHHHHHhCCC------hh-hHHHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCC
Confidence 44555666778 8999999999999999987654 22 2233333222234444444788888888776332211
Q ss_pred c---hhh---hHHH---HHHHHHHhhcCCCCChHHHHHHHHHHHH---HHHHhHhhhhhc-CChHHHHHHHHhhhccCCC
Q 004960 240 L---LGD---SVKS---IVHFSLEVSSSHNLEPNTRHQAIQIISW---LAKYKYNSLKKH-KLVIPILQVMCPLLAESNE 306 (721)
Q Consensus 240 ~---~~~---~~~~---l~~~~~~~~~~~~~~~~~r~~a~~~l~~---l~~~~~~~~~~~-~~~~~il~~l~~~l~~~~~ 306 (721)
- ... -+.. .+.... .+.+.+ .+..-...+..-.. .....+...... +.+.-+...+.....+.+.
T Consensus 965 ~~~d~~~~~~kI~~~~~vv~~~~-d~~~~~-~eqLl~~ilk~~~~~~~~~~~~~v~~~~v~~~~~L~~~cl~~~i~ev~~ 1042 (1692)
T KOG1020|consen 965 EVNDQPAKARKISLEVDVVMSQV-DLMNDW-LEQLLDHILKFYLLKTMKESVKPVALAKVTHVLNLLTHCLVEKISEVES 1042 (1692)
T ss_pred cccccHHHHHhhHHHHHHHHHHH-HHhcCh-HHHHHHHHHHHHHhhhhhhhhhHHHHhhcchHHHHHHHHHHHHHHhhhh
Confidence 1 111 1111 111111 111121 12222222211111 000111100000 0111122222233333331
Q ss_pred CCC-CCCCcHH-HHHHHHHHHHHHHcCccccHhHHHHHHhhhcCC-----ChhhHhHHHHHHHHHhhccHHHHHHhHHHH
Q 004960 307 AGE-DDDLAPD-RAAAEVIDTMALNLAKHVFPPVFEFASVSCQNA-----SPKYREAAVTAIGIISEGCAEWMKEKLESV 379 (721)
Q Consensus 307 ~~~-~~~~~~~-~~a~~~l~~l~~~~~~~~~~~i~~~l~~~l~~~-----~~~~r~~al~~l~~i~~~~~~~~~~~l~~i 379 (721)
+++ +++...+ .+....|..++...|.-..+..+..+..++.+. ..+.-+..+..+.....-....-..++..+
T Consensus 1043 ~~~~~~~~~~~~~~~lstL~~FskirP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sL 1122 (1692)
T KOG1020|consen 1043 DDMNEEESEVRLLAYLSTLFVFSKIRPQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSESFLASL 1122 (1692)
T ss_pred HhhhcccchhHHHHHHHHHHHHHhcCchhccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchHHHHHHH
Confidence 111 1122222 233444555555554322223333334444433 112222333334443332222212233333
Q ss_pred HHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHH--HH----hhhhHHHHHHHhccCC----ChHHHHHHHHHHHHHHHh
Q 004960 380 LHIVLGALRDPEQFVRGAASFALGQFAEYLQPEI--VS----HYESVLPCILNALEDE----SDEVKEKSYYALAAFCED 449 (721)
Q Consensus 380 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~----~~~~~l~~l~~~l~~~----~~~v~~~a~~al~~l~~~ 449 (721)
=..+++.+---+-.....|..|++.++......+ .. .+-..++.+-...++. ....-.+.+.+++-+++.
T Consensus 1123 Ee~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l~Ry 1202 (1692)
T KOG1020|consen 1123 EEDLLKRIVKMGMATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLLSRY 1202 (1692)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHh
Confidence 3444444433355555677788888887533211 11 1122233332222222 112345567777877774
Q ss_pred hh--------hccc----cchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhc
Q 004960 450 MG--------EEIL----PFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQA 494 (721)
Q Consensus 450 ~~--------~~~~----~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~~ 494 (721)
.. +... ...+.++..|.-.....+..+|..|+.++|.++-.-+.-
T Consensus 1203 fdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp~l 1259 (1692)
T KOG1020|consen 1203 FDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQHPSL 1259 (1692)
T ss_pred ccCCCccCCCccchhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCchh
Confidence 41 1111 233455555555556667899999999999988765543
No 100
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.48 E-value=6.2e-07 Score=74.98 Aligned_cols=111 Identities=23% Similarity=0.324 Sum_probs=91.4
Q ss_pred HHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhh-hHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhcccc
Q 004960 378 SVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYE-SVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILP 456 (721)
Q Consensus 378 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~ 456 (721)
++++.+.+.+.+.++.+|..++++++.++...++....... ++++.+++.+.+++++++..++++|.+++...+.....
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 86 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLI 86 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHH
Confidence 36778888889999999999999999999876554444454 89999999999999999999999999998876443332
Q ss_pred ch-HHHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q 004960 457 FL-DPLMGKLLAALENSPRNLQETCMSAIGSVA 488 (721)
Q Consensus 457 ~~-~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~ 488 (721)
+. .++++.+.+.+.+.+..+++.++.++..++
T Consensus 87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 33 357888889999989999999999988775
No 101
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.48 E-value=0.0001 Score=71.79 Aligned_cols=495 Identities=15% Similarity=0.148 Sum_probs=262.7
Q ss_pred HHHHHHHHHHHHHHHccccC---CCCCcchHHHHH---------HhccCCcHHHHHHHHHHHHHhhhhhh----------
Q 004960 93 APVRRASANVVSIIAKYAVP---AGEWPDLLPFLF---------QFSQSEQEEHREVALILFSSLTETIG---------- 150 (721)
Q Consensus 93 ~~vr~~~~~~l~~i~~~~~~---~~~~~~ll~~l~---------~~l~~~~~~~~~~al~~l~~i~~~~~---------- 150 (721)
.+||..+..++......... -++|.-++|.-- -.+++++++.|..|+.+...+.++..
T Consensus 10 akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~~ 89 (728)
T KOG4535|consen 10 AKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDTS 89 (728)
T ss_pred HHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhccC
Confidence 45555555555544321110 156766666432 23567889999999999999987643
Q ss_pred -hcccccH-------HHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHH
Q 004960 151 -QTFRPHF-------ADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDV 222 (721)
Q Consensus 151 -~~~~~~~-------~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~ 222 (721)
..|.++. .+.-..++-.+.-+..+.+-...++|+..++...+ .+... -.++..+++.+.+.+..+++.+
T Consensus 90 ~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p--~~~l~-~~~~~~~~~~ik~~i~~~d~~v 166 (728)
T KOG4535|consen 90 DHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAP--YDRLK-LSLLTKVWNQIKPYIRHKDVNV 166 (728)
T ss_pred CcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCc--hHHHH-HHHHHHHHHHHHHHhhcCCCCh
Confidence 1233322 23334555555543677888899999999988653 22222 2456667777788888999999
Q ss_pred HHHHHHHHHHHhcCcccchhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhh------hhh---c-CChHH
Q 004960 223 AVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNS------LKK---H-KLVIP 292 (721)
Q Consensus 223 ~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~------~~~---~-~~~~~ 292 (721)
+..++..++.++....+. |.+-..+-...+..+. ..-....-+.|..++...... -+. + ..+..
T Consensus 167 ~vs~l~~~~~~v~t~~~~-----pei~~~~~~~~s~~n~-~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~ 240 (728)
T KOG4535|consen 167 RVSSLTLLGAIVSTHAPL-----PEVQLLLQQPCSSSNS-ATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRL 240 (728)
T ss_pred hhHHHHHHHHHHhcCCCC-----HHHHHHhcCCCccccc-cCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeee
Confidence 999999999988765321 1111111111111110 000011122333333111000 000 0 00110
Q ss_pred HHHHHHhhhccCC----C-----CCCCCCCcHHHHHHHHHHHHHHHcC--ccccHhHHHHHHhhhcCCChhhHhHHHHHH
Q 004960 293 ILQVMCPLLAESN----E-----AGEDDDLAPDRAAAEVIDTMALNLA--KHVFPPVFEFASVSCQNASPKYREAAVTAI 361 (721)
Q Consensus 293 il~~l~~~l~~~~----~-----~~~~~~~~~~~~a~~~l~~l~~~~~--~~~~~~i~~~l~~~l~~~~~~~r~~al~~l 361 (721)
. ..+.+...+.. + +..-.-...|-.+...+..++..++ .-++..+...+...+.+..+..+..+..++
T Consensus 241 ~-~~i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll 319 (728)
T KOG4535|consen 241 C-ISIVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLL 319 (728)
T ss_pred e-eeeeecCCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHH
Confidence 0 00111111100 0 0000012334456667777777776 334556666666777777777777776666
Q ss_pred HHHhhccHHHHHHh------HHH-HHHHHH-----hh-cCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhc
Q 004960 362 GIISEGCAEWMKEK------LES-VLHIVL-----GA-LRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNAL 428 (721)
Q Consensus 362 ~~i~~~~~~~~~~~------l~~-i~~~l~-----~~-l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l 428 (721)
..+..+......|. ... +..++. .. .+...+..+.++|.++.++...-...+.+--....+.++.+.
T Consensus 320 ~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC 399 (728)
T KOG4535|consen 320 EELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGC 399 (728)
T ss_pred HHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcc
Confidence 66655543222111 111 111111 11 123466777788888887754321111111224566667777
Q ss_pred cCCChH-HHHHHHHHHHHHHHhhhh-ccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhcchh---hHHHHH
Q 004960 429 EDESDE-VKEKSYYALAAFCEDMGE-EILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIP---YAERVL 503 (721)
Q Consensus 429 ~~~~~~-v~~~a~~al~~l~~~~~~-~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~~~~~---~~~~i~ 503 (721)
.|...+ ++.+|..++.-++-..+. ....+.......+...+.+..-..|+.+..++|.|..+.-.+... +-..+.
T Consensus 400 ~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~s 479 (728)
T KOG4535|consen 400 NDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFS 479 (728)
T ss_pred cchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHH
Confidence 765443 677777776655433322 122455666677777777777888999999999998887654433 444444
Q ss_pred HHH-HHHHh---ccCchhhhhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccC-----CCChhhHHHHHHHHHHHH
Q 004960 504 ELL-KIFMV---LTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFG-----LEFSELREYTHGFFSNIA 574 (721)
Q Consensus 504 ~~l-~~~l~---~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~-----~~~~~~~~~~~~~l~~l~ 574 (721)
..+ ...+. ..+....+++..+++.++.+.+.+.+ ...+-...+++.-+..+- ...-.|+=.+..++|++.
T Consensus 480 g~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~-i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLf 558 (728)
T KOG4535|consen 480 GLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQP-IEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLF 558 (728)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHH-hhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhh
Confidence 432 22222 22223346788888888888766642 112222333333322221 225567777788888887
Q ss_pred HHccc--CcccchhhhHHHHHhhccC
Q 004960 575 GVLED--GFAQYLPLVVPLAFSSCNL 598 (721)
Q Consensus 575 ~~~~~--~~~~~l~~i~~~ll~~~~~ 598 (721)
+.-.- +-.++.+.+.|.|......
T Consensus 559 kn~a~~lq~~~wA~~~F~~L~~Lv~~ 584 (728)
T KOG4535|consen 559 KNPALPLQTAPWASQAFNALTSLVTS 584 (728)
T ss_pred cCccccccCCCchHHHHHHHHHHHHH
Confidence 64332 3356778888887766543
No 102
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.46 E-value=2.3e-05 Score=76.23 Aligned_cols=198 Identities=13% Similarity=0.154 Sum_probs=143.5
Q ss_pred CCCHhHHHHHHHHHHHH-HhhhhHHHHHhhhhHHHHHHHhccC-CChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHH
Q 004960 389 DPEQFVRGAASFALGQF-AEYLQPEIVSHYESVLPCILNALED-ESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLL 466 (721)
Q Consensus 389 d~~~~vr~~a~~~l~~l-~~~~~~~~~~~~~~~l~~l~~~l~~-~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~ 466 (721)
++...=|..|+.-|-.+ ++.-..-..+|+..++..+++.|.+ .+...+.-|+..|+.++++-+..+..+.+..+..++
T Consensus 298 ~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~L 377 (516)
T KOG2956|consen 298 SERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVL 377 (516)
T ss_pred ccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHH
Confidence 43445566666644433 3332223346889999999999998 566788999999999999999999999999998888
Q ss_pred HhhcCCChhHHHHHHHHH-HHHHHHhhhcchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhccCChH
Q 004960 467 AALENSPRNLQETCMSAI-GSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILP 545 (721)
Q Consensus 467 ~~l~~~~~~v~~~~l~~l-~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 545 (721)
..-.+.+..+-..|-++. ..++...+... +..+.|.+.. .+++ .-..++.++..+...+..+.+.+.++
T Consensus 378 eaa~ds~~~v~~~Aeed~~~~las~~P~~~---I~~i~~~Ilt----~D~~---~~~~~iKm~Tkl~e~l~~EeL~~ll~ 447 (516)
T KOG2956|consen 378 EAAKDSQDEVMRVAEEDCLTTLASHLPLQC---IVNISPLILT----ADEP---RAVAVIKMLTKLFERLSAEELLNLLP 447 (516)
T ss_pred HHHhCCchhHHHHHHHHHHHHHHhhCchhH---HHHHhhHHhc----Ccch---HHHHHHHHHHHHHhhcCHHHHHHhhh
Confidence 888888766555554443 34444333211 2223333322 2222 11246778888888888888899999
Q ss_pred HHHHHHHhccCCCChhhHHHHHHHHHHHHHHcc-cCcccchhhhHHHHHhhc
Q 004960 546 PFVEAAISGFGLEFSELREYTHGFFSNIAGVLE-DGFAQYLPLVVPLAFSSC 596 (721)
Q Consensus 546 ~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~l~~i~~~ll~~~ 596 (721)
++++.+++..++....+|+.+..|+-.|....| +.+.||+..+-..-++.+
T Consensus 448 diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk~~Ll 499 (516)
T KOG2956|consen 448 DIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSKLNLL 499 (516)
T ss_pred hhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHHHHHH
Confidence 999999999999999999999999999999999 899999988776655443
No 103
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.46 E-value=1.5e-05 Score=74.46 Aligned_cols=194 Identities=13% Similarity=0.122 Sum_probs=126.3
Q ss_pred hHHHHHHhhhc-CCChhhHhHHHHHHHHHhhccH-HHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhH--H
Q 004960 337 PVFEFASVSCQ-NASPKYREAAVTAIGIISEGCA-EWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQP--E 412 (721)
Q Consensus 337 ~i~~~l~~~l~-~~~~~~r~~al~~l~~i~~~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~ 412 (721)
.-++.+...++ +.++..++.++.+++..+.... ..+... -..++.+...++++++.+|..|++++.+++...+. .
T Consensus 12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~-~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~ 90 (254)
T PF04826_consen 12 QELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRD-LGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQ 90 (254)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHH-cCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHH
Confidence 34555666666 4688999999999999876432 111111 25678899999999999999999999999876543 2
Q ss_pred HHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhh
Q 004960 413 IVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAE 492 (721)
Q Consensus 413 ~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~ 492 (721)
+..|+++++..+... ..+..++.+++.+|.++.-. ......+...++.++.++..++..+|..++.++..+.....
T Consensus 91 Ik~~i~~Vc~~~~s~--~lns~~Q~agLrlL~nLtv~--~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~ 166 (254)
T PF04826_consen 91 IKMYIPQVCEETVSS--PLNSEVQLAGLRLLTNLTVT--NDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPD 166 (254)
T ss_pred HHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHccCCC--cchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHH
Confidence 334556665555442 22567999999999988422 22233344566677788899999999999999988876432
Q ss_pred hcchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhch
Q 004960 493 QAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGR 537 (721)
Q Consensus 493 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~ 537 (721)
..-.-.-.+..+.+..+++...+. +..-+++..+..+...+++
T Consensus 167 ~~~~Ll~~q~~~~~~~Lf~~~~~~--~~l~~~l~~~~ni~~~~~~ 209 (254)
T PF04826_consen 167 MTRELLSAQVLSSFLSLFNSSESK--ENLLRVLTFFENINENIKK 209 (254)
T ss_pred HHHHHHhccchhHHHHHHccCCcc--HHHHHHHHHHHHHHHhhCc
Confidence 111111123444455555443222 3334577777777766654
No 104
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=0.0012 Score=68.41 Aligned_cols=430 Identities=13% Similarity=0.152 Sum_probs=213.3
Q ss_pred HHHHhhcCCHHHH-HHHHHHHHHHHccccCCCCCcchHHHHHHhcc-CCcHHHHHHHHHHHHHhhhhhhh-cccccHHHH
Q 004960 84 IESITLEHSAPVR-RASANVVSIIAKYAVPAGEWPDLLPFLFQFSQ-SEQEEHREVALILFSSLTETIGQ-TFRPHFADM 160 (721)
Q Consensus 84 l~~l~~e~~~~vr-~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~-~~~~~~~~~al~~l~~i~~~~~~-~~~~~~~~l 160 (721)
.+.|.+ .+.+.+ ...-+++..+... +..|.++-.++...- +.+...+..-+..+.-+.+..++ .+...+--+
T Consensus 26 k~~Lek-~~~~~KIeamK~ii~~mlnG----e~~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EMILv 100 (948)
T KOG1058|consen 26 KEKLEK-GDDEVKIEAMKKIIALMLNG----EDLPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEMILV 100 (948)
T ss_pred HHHHhc-CChHHHHHHHHHHHHHHHcC----CCchHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCcccHHHHHHH
Confidence 334443 344444 3333344444432 357777777766543 44444444433333333333322 222222233
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcccc
Q 004960 161 QALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPL 240 (721)
Q Consensus 161 ~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~ 240 (721)
.+.+.+-|++ +|.-+|...++.++++=+ .+++.+++..+..++.....-+|+.|+-++..+.......
T Consensus 101 cna~RkDLQH-PNEyiRG~TLRFLckLkE-----------~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L 168 (948)
T KOG1058|consen 101 CNAYRKDLQH-PNEYIRGSTLRFLCKLKE-----------PELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHL 168 (948)
T ss_pred HHHHhhhccC-chHhhcchhhhhhhhcCc-----------HHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhh
Confidence 4666677788 899999999988876543 2233344444444888888999999988888887763332
Q ss_pred hhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHH
Q 004960 241 LGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAA 320 (721)
Q Consensus 241 ~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~ 320 (721)
+ +-.|.++...+. .+.++..++.|+-.|..+-. .... .|+...+. ...... ......-.
T Consensus 169 ~-pDapeLi~~fL~----~e~DpsCkRNAFi~L~~~D~---ErAl--~Yl~~~id----qi~~~~-------~~LqlViV 227 (948)
T KOG1058|consen 169 I-PDAPELIESFLL----TEQDPSCKRNAFLMLFTTDP---ERAL--NYLLSNID----QIPSFN-------DSLQLVIV 227 (948)
T ss_pred c-CChHHHHHHHHH----hccCchhHHHHHHHHHhcCH---HHHH--HHHHhhHh----hccCcc-------HHHHHHHH
Confidence 2 233455544332 22356667776543332211 1000 00100000 000000 11112222
Q ss_pred HHHHHHHHHcCccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHH
Q 004960 321 EVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASF 400 (721)
Q Consensus 321 ~~l~~l~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~ 400 (721)
+.+...+..-+. --...+..+...+.+.+...++-|...+-.++. .+..++.-...++..+.+. ++.+|+...+.
T Consensus 228 E~Irkv~~~~p~-~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~-~p~alk~Aa~~~i~l~~ke---sdnnvklIvld 302 (948)
T KOG1058|consen 228 ELIRKVCLANPA-EKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSN-DPTALKAAASTYIDLLVKE---SDNNVKLIVLD 302 (948)
T ss_pred HHHHHHHhcCHH-HhhHHHHHHHHHHhcCCchhhhhhcceEEEccC-CHHHHHHHHHHHHHHHHhc---cCcchhhhhHH
Confidence 333333332221 112334444445555555566555444433332 2233333333334333322 23334444444
Q ss_pred HHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcC-------CC
Q 004960 401 ALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALEN-------SP 473 (721)
Q Consensus 401 ~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~-------~~ 473 (721)
-|..+. ......+++++-.++..|..++-.||..++.....++..- .++++++.|.+-+.. .+
T Consensus 303 rl~~l~----~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssr------Nvediv~~Lkke~~kT~~~e~d~~ 372 (948)
T KOG1058|consen 303 RLSELK----ALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSR------NVEDIVQFLKKEVMKTHNEESDDN 372 (948)
T ss_pred HHHHHh----hhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhc------cHHHHHHHHHHHHHhccccccccc
Confidence 444443 2223567788888889999999999999988888776543 234455554443322 23
Q ss_pred hhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHh
Q 004960 474 RNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAIS 553 (721)
Q Consensus 474 ~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~ 553 (721)
.+.|...+.++...+.. |..+...++|.+...+...+.. .+-..+..+...+. .|...=..++..++.
T Consensus 373 ~~yRqlLiktih~cav~----Fp~~aatvV~~ll~fisD~N~~------aas~vl~FvrE~ie--k~p~Lr~~ii~~l~~ 440 (948)
T KOG1058|consen 373 GKYRQLLIKTIHACAVK----FPEVAATVVSLLLDFISDSNEA------AASDVLMFVREAIE--KFPNLRASIIEKLLE 440 (948)
T ss_pred hHHHHHHHHHHHHHhhc----ChHHHHHHHHHHHHHhccCCHH------HHHHHHHHHHHHHH--hCchHHHHHHHHHHH
Confidence 55677777777666544 6667888899888888654321 12222233322221 222222334444444
Q ss_pred ccCC-CChhhHHHHHHHHHHHHHHcc
Q 004960 554 GFGL-EFSELREYTHGFFSNIAGVLE 578 (721)
Q Consensus 554 ~l~~-~~~~~~~~~~~~l~~l~~~~~ 578 (721)
.+.. ...++...++..+|..|...+
T Consensus 441 ~~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 441 TFPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred hhhhhcccccchhHHHHHHHHHhhhH
Confidence 4431 244555555565665554443
No 105
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.43 E-value=0.0015 Score=71.32 Aligned_cols=460 Identities=13% Similarity=0.137 Sum_probs=235.0
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHhc---C--CCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhcCCCHHHHH
Q 004960 3 QSLELLLIQFLMPDNDARRQAEDQIKRLAK---D--PQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQ 77 (721)
Q Consensus 3 ~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~---~--p~~~~~l~~il~~~~~~~vr~~a~~~l~~~i~~~w~~~~~~~~~ 77 (721)
+.+--+.+.+.+.++++.++|-.-|..-.. + ...+..++++..+. ++.+|.......+..+.+.-..=......
T Consensus 541 ~~~~ii~~ll~s~t~teV~E~Idfl~~c~~F~I~gae~~irkMl~LVWsk-d~~i~e~v~~ayk~l~~~~~~n~~~~e~~ 619 (1251)
T KOG0414|consen 541 EAIPIISQLLFSKTTTEVKEAIDFLVRCKQFGIDGAEFGIRKMLPLVWSK-DKEIREAVENAYKQLYFRPDGNSKASEAS 619 (1251)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCCcHHHHHHHHhhhhhCC-CccHHHHHHHHHHHHhccCCCCchhhHHH
Confidence 344445555667777777777777643222 1 23567777777663 34467666666666654432222222336
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhcc----CCcHHHHHHHHHHHHHhhhhhhhcc
Q 004960 78 LVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQ----SEQEEHREVALILFSSLTETIGQTF 153 (721)
Q Consensus 78 ~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~----~~~~~~~~~al~~l~~i~~~~~~~~ 153 (721)
.+.++|+..+. +.+..-+..+-+++..++...+ .-+.++..|++... ....+....++..++-+....++..
T Consensus 620 ~ia~NL~~l~~-~~s~~d~~slE~vl~~lv~~~~---Id~~Vi~~Lw~~ftlq~~~~~~~q~~~sl~iL~M~s~s~~~Iv 695 (1251)
T KOG0414|consen 620 SIAQNLSKLLI-DASIGDLTSLEEVLCELVARGY---IDAAVINKLWEIFTLQKKGTTNEQSRGSLIILGMASRSKPSIV 695 (1251)
T ss_pred HHHHHHHHHHh-cccccchhhHHHHHHHHHhCCC---ccHHHHHHHHHHHHHHhccCchhhhccceeehhhhhccChhhh
Confidence 66677777665 4555556667777777665432 33556666666551 1222344677888887776665544
Q ss_pred cccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCC--h-----hhHHHHHhhHHHHHHHHHH-HhhcC--CHHHH
Q 004960 154 RPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTND--G-----AEVVKFREFIPSILNVSRQ-CLASG--EEDVA 223 (721)
Q Consensus 154 ~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~--~-----~~~~~~~~~l~~ll~~l~~-~l~~~--~~~~~ 223 (721)
....+.++ ..++.. +.....++..+..++.-... . ........+...+-..+.. +...+ ...+.
T Consensus 696 ~~~~~~lv---~iglg~---p~l~~~~L~~~s~i~~~r~~~~~~~r~~f~~~~~~~L~k~L~~l~~~~~~~~d~~~~~~~ 769 (1251)
T KOG0414|consen 696 LANLDLLV---QIGLGE---PRLAVDVLARYSNIVDPRKLEDAYSRPKFNLEQEEVLFKILEKLLFFEFMKADDDWFGVA 769 (1251)
T ss_pred hhhhHHHH---HhccCc---HHHHHHHHHHHHHhhcccccchhhccccccCchHHHHHHHHHHHHhhccCCcchHHHHHH
Confidence 33333332 223322 44444444444433221111 0 0000001111111111111 12211 12356
Q ss_pred HHHHHHHHHHhcCcccchhhhHHHHHHHHHHhhc--C---CCCC------hHHHHHHHHHHHHHHHHhHhhhhhcCChHH
Q 004960 224 VIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSS--S---HNLE------PNTRHQAIQIISWLAKYKYNSLKKHKLVIP 292 (721)
Q Consensus 224 ~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~--~---~~~~------~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~ 292 (721)
..|+..+-.+...+.......+.......+.... . .+.. ...|...-.++..+... .++...|++.
T Consensus 770 e~ais~Iy~is~~Pe~la~~li~~~~~~~f~~~~~E~~~~~~d~~k~~~ltp~~~l~~~lif~vg~v---AikqlvyiE~ 846 (1251)
T KOG0414|consen 770 EVAISAIYSISMLPEVLATQLIRKLLKQDFESLECEADTITDDPRKSDALTPERVLKDSLIFIVGDV---AIKQLVYIEV 846 (1251)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHhhhhhhhhccccCCcccccccCHHHHHHHhHHHHHHHH---HHHHHHHHHH
Confidence 6777777777765433333333332222221111 1 0000 01111111111111110 0111112222
Q ss_pred HHHHHHhh------hccC---C--C-------C---CCCCC---CcHHHHHHHHHHHHHH---HcC-ccccHhHHHHHHh
Q 004960 293 ILQVMCPL------LAES---N--E-------A---GEDDD---LAPDRAAAEVIDTMAL---NLA-KHVFPPVFEFASV 344 (721)
Q Consensus 293 il~~l~~~------l~~~---~--~-------~---~~~~~---~~~~~~a~~~l~~l~~---~~~-~~~~~~i~~~l~~ 344 (721)
-+..-+.. ..+. + + + +.+.+ ......-.+++..+++ .+| +..+..+.|++.+
T Consensus 847 ~i~~~~kRr~~~~~~~e~k~~N~~e~~s~t~~~~~~~~e~dlig~tseDd~~d~i~~icE~eLl~gek~lLg~f~piv~e 926 (1251)
T KOG0414|consen 847 CISKEFKRRKIKTELEEKKDKNQRENLSNTQRETQFTVELDLIGGTSEDDLADLISGICEKELLYGEKSLLGRFAPIVVE 926 (1251)
T ss_pred HHHHHHHHHHHHHHHHhhcccCchhhhccccccccCCccccccCCCcchhHHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 21111100 0000 0 0 0 00000 0111222344444443 244 5566677777776
Q ss_pred hhc----CCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcC-CCCHhHHHHHHHHHHHHHhhhhHHHHHhhhh
Q 004960 345 SCQ----NASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALR-DPEQFVRGAASFALGQFAEYLQPEIVSHYES 419 (721)
Q Consensus 345 ~l~----~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 419 (721)
... ..++..+.+|..+++.++.-..+....+ +|.++..+. .++|.||..+.-++|.++-.++ ..++.
T Consensus 927 ~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces~----l~llftimeksp~p~IRsN~VvalgDlav~fp----nlie~ 998 (1251)
T KOG0414|consen 927 GCRNPGLFSDPELQAAATLALGKLMCISAEFCESH----LPLLFTIMEKSPSPRIRSNLVVALGDLAVRFP----NLIEP 998 (1251)
T ss_pred HhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHHH----HHHHHHHHhcCCCceeeecchheccchhhhcc----cccch
Confidence 653 3568899999999999886555555444 556666665 8999999999999999998876 35677
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q 004960 420 VLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVA 488 (721)
Q Consensus 420 ~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~ 488 (721)
.-+.+...|+|+++.||..|...|..++-+---.+.- -+..+..++.+++..++.-+=..+..+.
T Consensus 999 ~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVKG----ql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 999 WTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVKG----QLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred hhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhcc----cHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 7888999999999999999999999998654323333 3344666778888777665544444443
No 106
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.41 E-value=6.4e-07 Score=62.03 Aligned_cols=55 Identities=31% Similarity=0.480 Sum_probs=51.5
Q ss_pred HhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHH
Q 004960 392 QFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAF 446 (721)
Q Consensus 392 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l 446 (721)
|.||..|+++||.++...+....++.+.+++.|...|.|+++.||..|+++|+++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 6899999999999998888888899999999999999999999999999999865
No 107
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=98.35 E-value=1.5e-05 Score=86.01 Aligned_cols=201 Identities=18% Similarity=0.190 Sum_probs=157.6
Q ss_pred cccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccH-HHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhH
Q 004960 333 HVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCA-EWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQP 411 (721)
Q Consensus 333 ~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 411 (721)
++.+.+-+.+...+.+++|+.|..|+..+..+.+..+ .....+...+...+-..+.|.|..|...|+.+|..++..++.
T Consensus 249 di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~ 328 (815)
T KOG1820|consen 249 DILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRP 328 (815)
T ss_pred hhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcch
Confidence 3556666777778889999999999999888887665 222333444455555566799999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHh
Q 004960 412 EIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAA 491 (721)
Q Consensus 412 ~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~ 491 (721)
.+.+|...++|.++..+.+....++..+..++..++.. -.+..+.+.+...+.+.++..+......++......
T Consensus 329 ~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns------~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~ 402 (815)
T KOG1820|consen 329 LFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNS------TPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKL 402 (815)
T ss_pred hhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhc
Confidence 88899999999999999999889999888888887762 335677778888899999999999999999888887
Q ss_pred hhcc--hhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhccC
Q 004960 492 EQAF--IPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEP 542 (721)
Q Consensus 492 ~~~~--~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 542 (721)
+... ..-...+.|.+.... +|.+..+|..+.++++.+...+|.+.+..
T Consensus 403 ~~~~~~~~t~~~l~p~~~~~~---~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k 452 (815)
T KOG1820|consen 403 GPKTVEKETVKTLVPHLIKHI---NDTDKDVRKAALEAVAAVMKVHGEEVFKK 452 (815)
T ss_pred CCcCcchhhHHHHhHHHhhhc---cCCcHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 7422 223566777665544 44556789999999999998888655433
No 108
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=98.34 E-value=0.0073 Score=64.64 Aligned_cols=173 Identities=14% Similarity=0.162 Sum_probs=115.2
Q ss_pred HHHHh-hCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcccch
Q 004960 163 LLLKC-LQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLL 241 (721)
Q Consensus 163 ~l~~~-l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~ 241 (721)
.+..+ +.+ .+...|..|++-+..-+...++ +..++|.++. .+...+.+.++.+.--|..+++..|...
T Consensus 22 ~~~sg~l~s-~n~~~kidAmK~iIa~M~~G~d------mssLf~dViK----~~~trd~ElKrL~ylYl~~yak~~P~~~ 90 (757)
T COG5096 22 ALSSGRLES-SNDYKKIDAMKKIIAQMSLGED------MSSLFPDVIK----NVATRDVELKRLLYLYLERYAKLKPELA 90 (757)
T ss_pred hhccccccc-cChHHHHHHHHHHHHHHhcCCC------hHHHHHHHHH----HHHhcCHHHHHHHHHHHHHHhccCHHHH
Confidence 33444 667 7888999998877766655433 4567777766 3446788988888888888888776322
Q ss_pred hhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHH
Q 004960 242 GDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAE 321 (721)
Q Consensus 242 ~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~ 321 (721)
-. .++.+..-++++ ++.+|..|+.+++.+-.. .++..+++.+...+.+.. ..+|+.|.-
T Consensus 91 lL----avNti~kDl~d~--N~~iR~~AlR~ls~l~~~--------el~~~~~~~ik~~l~d~~-------ayVRk~Aal 149 (757)
T COG5096 91 LL----AVNTIQKDLQDP--NEEIRGFALRTLSLLRVK--------ELLGNIIDPIKKLLTDPH-------AYVRKTAAL 149 (757)
T ss_pred HH----HHHHHHhhccCC--CHHHHHHHHHHHHhcChH--------HHHHHHHHHHHHHccCCc-------HHHHHHHHH
Confidence 22 234444445555 789999999887766532 235566666666666544 468888888
Q ss_pred HHHHHHHHcCccccHh-HHHHHHhhhcCCChhhHhHHHHHHHHHhhc
Q 004960 322 VIDTMALNLAKHVFPP-VFEFASVSCQNASPKYREAAVTAIGIISEG 367 (721)
Q Consensus 322 ~l~~l~~~~~~~~~~~-i~~~l~~~l~~~~~~~r~~al~~l~~i~~~ 367 (721)
++..+-+.-++.+-.. ....+...+.+.++.+...|+.++..+-..
T Consensus 150 av~kly~ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 150 AVAKLYRLDKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHhcCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 8777665444333333 455556667788999999999888887654
No 109
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=0.0022 Score=67.44 Aligned_cols=186 Identities=14% Similarity=0.083 Sum_probs=122.0
Q ss_pred HHHHHHHHhcCC-ChHHHHHHHHHHHHHhc--C-------C--CcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhcCC
Q 004960 4 SLELLLIQFLMP-DNDARRQAEDQIKRLAK--D-------P--QVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKL 71 (721)
Q Consensus 4 ~l~~ll~~~~s~-d~~~r~~A~~~L~~~~~--~-------p--~~~~~l~~il~~~~~~~vr~~a~~~l~~~i~~~w~~~ 71 (721)
.+.++|+++.+. |..++-+|..+|-++.. + | .+++.|..++....++.+...|+-.|-+.+.-.-.+.
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence 467889999765 88788888777755432 1 2 5688999999877789999999977776654432221
Q ss_pred CHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHccccCCCCC-cchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhh
Q 004960 72 SPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEW-PDLLPFLFQFSQSEQEEHREVALILFSSLTETIG 150 (721)
Q Consensus 72 ~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~ 150 (721)
.--........+++.|..-.-..+..+.-+++..|.+.... ... ..-+...+..+.==....+..|+-+..++|+..+
T Consensus 248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~-AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~ 326 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK-AILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIR 326 (1051)
T ss_pred heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH-HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 11111122334444444334567888888899888874321 111 1112222222221123456688889999998875
Q ss_pred hcccccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhc
Q 004960 151 QTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFT 191 (721)
Q Consensus 151 ~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~ 191 (721)
..-..++-+.+|++...|+. .+...-..++-|+.++++..
T Consensus 327 sd~f~~v~ealPlL~~lLs~-~D~k~ies~~ic~~ri~d~f 366 (1051)
T KOG0168|consen 327 SDEFHFVMEALPLLTPLLSY-QDKKPIESVCICLTRIADGF 366 (1051)
T ss_pred CccchHHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHHHhc
Confidence 54445778889999999998 78888888999999887754
No 110
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=0.0055 Score=63.16 Aligned_cols=425 Identities=13% Similarity=0.117 Sum_probs=196.5
Q ss_pred cCCChHHHHHHHHHHHHHhcC---CCcHHHHHHHHhc-CCChhHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHHHHHHh
Q 004960 13 LMPDNDARRQAEDQIKRLAKD---PQVVPALVQHLRT-AKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESIT 88 (721)
Q Consensus 13 ~s~d~~~r~~A~~~L~~~~~~---p~~~~~l~~il~~-~~~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i~~~ll~~l~ 88 (721)
.|.|+....-|.+.+..+-.- ..|..-+-.+|.+ +..+.+|+.||..|-+.+++.-+.++++ .-.+.+++.|.
T Consensus 121 ~srn~~fv~LAL~~I~niG~re~~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~~~---~W~~riv~LL~ 197 (938)
T KOG1077|consen 121 SSRNPTFVCLALHCIANIGSREMAEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVNPG---EWAQRIVHLLD 197 (938)
T ss_pred hcCCcHHHHHHHHHHHhhccHhHHHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccChh---hHHHHHHHHhC
Confidence 344444444444444443321 1233334455555 3467889999999989888754444442 22334556665
Q ss_pred hcCCHHHHHHHHHHHHHHHccccCCCCCcchHH----HHHHhccC-------------CcHHHHHHHHHHHHHhhhhhhh
Q 004960 89 LEHSAPVRRASANVVSIIAKYAVPAGEWPDLLP----FLFQFSQS-------------EQEEHREVALILFSSLTETIGQ 151 (721)
Q Consensus 89 ~e~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~----~l~~~l~~-------------~~~~~~~~al~~l~~i~~~~~~ 151 (721)
|.+..+-..+...+..++.+..+ .+..-++ .|...... +.|-..--.+..|...-...+.
T Consensus 198 -D~~~gv~ta~~sLi~~lvk~~p~--~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~ 274 (938)
T KOG1077|consen 198 -DQHMGVVTAATSLIEALVKKNPE--SYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDP 274 (938)
T ss_pred -ccccceeeehHHHHHHHHHcCCH--HHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCc
Confidence 56676777777777777654322 1222222 22111111 1111112222233222110001
Q ss_pred cccccHHHHHHHHHHhhCCC---CC---HHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHH
Q 004960 152 TFRPHFADMQALLLKCLQDE---TS---NRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVI 225 (721)
Q Consensus 152 ~~~~~~~~l~~~l~~~l~~~---~~---~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~ 225 (721)
.......+++..+++..++. .+ ...+.+.+.-..+++..... ..+++...++.+-+.+.+....+|-.
T Consensus 275 ~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~------e~~ll~~~~~~Lg~fls~rE~NiRYL 348 (938)
T KOG1077|consen 275 STRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDS------EPELLSRAVNQLGQFLSHRETNIRYL 348 (938)
T ss_pred hHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCC------cHHHHHHHHHHHHHHhhcccccchhh
Confidence 11112223333333333311 11 12223333333333333322 13455556666666666667777777
Q ss_pred HHHHHHHHhcCccc--chhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhcc
Q 004960 226 AFEIFDELIESPAP--LLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAE 303 (721)
Q Consensus 226 a~~~l~~l~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~ 303 (721)
+++.++.++..... .+..+...++.. +.. +-|..+|..+++.|..+|... -.+.|+..++..+..
T Consensus 349 aLEsm~~L~ss~~s~davK~h~d~Ii~s----Lkt-erDvSirrravDLLY~mcD~~--------Nak~IV~elLqYL~t 415 (938)
T KOG1077|consen 349 ALESMCKLASSEFSIDAVKKHQDTIINS----LKT-ERDVSIRRRAVDLLYAMCDVS--------NAKQIVAELLQYLET 415 (938)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHH----hcc-ccchHHHHHHHHHHHHHhchh--------hHHHHHHHHHHHHhh
Confidence 77777777765322 233444444433 231 226678999999999998542 255677777777765
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHcCcc--c-cHhHHHHHHh---hhcCCChhhHhHHHHHHHHHhhccHHHHHHhHH
Q 004960 304 SNEAGEDDDLAPDRAAAEVIDTMALNLAKH--V-FPPVFEFASV---SCQNASPKYREAAVTAIGIISEGCAEWMKEKLE 377 (721)
Q Consensus 304 ~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~--~-~~~i~~~l~~---~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~ 377 (721)
.+ .+.|.....-...+++.+..+ + +..+++.+.- ...++-|. ..++ +.-+ .+.+..+
T Consensus 416 Ad-------~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vsdeVW~---RvvQ----iVvN-nedlq~y-- 478 (938)
T KOG1077|consen 416 AD-------YSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVSDEVWY---RVVQ----IVVN-NEDLQGY-- 478 (938)
T ss_pred cc-------hHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccHHHHH---Hhhe----eEec-chhhhHH--
Confidence 43 555555444445555555421 1 2223333221 11111121 1110 1100 1111111
Q ss_pred HHHHHHHhhcCCC--CHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccc
Q 004960 378 SVLHIVLGALRDP--EQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEIL 455 (721)
Q Consensus 378 ~i~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~ 455 (721)
....+++.|..+ |....+.+.+.||.++......-...-...+..+-+.+...++..|.-.+.+.-.++...
T Consensus 479 -aak~~fe~Lq~~a~hE~mVKvggyiLGEfg~LIa~~prss~~~qFsllh~K~~~~s~~tr~lLLtTyiKl~nl~----- 552 (938)
T KOG1077|consen 479 -AAKRLFEYLQKPACHENMVKVGGYILGEFGNLIADDPRSSPAVQFSLLHEKLHLCSPVTRALLLTTYIKLINLF----- 552 (938)
T ss_pred -HHHHHHHHHhhhHHHHHHHHhhhhhhhhhhhhhcCCCCCChHHHHHHHHHHhccCChhHHHHHHHHHHHHHhhC-----
Confidence 112333444322 555666777888887765543111122234445555555555555554444444444333
Q ss_pred cchHHHHHHHHHh-hcCCChhHHHHHHHHHH
Q 004960 456 PFLDPLMGKLLAA-LENSPRNLQETCMSAIG 485 (721)
Q Consensus 456 ~~~~~i~~~l~~~-l~~~~~~v~~~~l~~l~ 485 (721)
|.+..-+...++. .+..+.+++..+++-+.
T Consensus 553 PEi~~~v~~vFq~~~n~~D~ElQqRa~EYLq 583 (938)
T KOG1077|consen 553 PEIKSNVQKVFQLYSNLIDVELQQRAVEYLQ 583 (938)
T ss_pred hhhhHHHHHHHHhhcccCCHHHHHHHHHHHH
Confidence 2222222222222 22357888888877654
No 111
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=7.2e-05 Score=78.22 Aligned_cols=234 Identities=16% Similarity=0.146 Sum_probs=174.1
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhcchhhHH
Q 004960 421 LPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAE 500 (721)
Q Consensus 421 l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~~~~~~~~ 500 (721)
+...+..++|+...+|..++..+..+++.-...-...-..++......+.+.++.+--.++..+..++...++
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e------- 801 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE------- 801 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch-------
Confidence 4555666778878899999999999998665544556678888899999999998888888888888877444
Q ss_pred HHHHHHHHHHhc-cCchhhhhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHccc
Q 004960 501 RVLELLKIFMVL-TNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLED 579 (721)
Q Consensus 501 ~i~~~l~~~l~~-~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~ 579 (721)
.++|.+...... .+....+.|-+.=+++..++.+.|+ .+..|...+++..+.+.++++...|.+.+..+|.+|....-
T Consensus 802 ~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Ge-l~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~ 880 (982)
T KOG4653|consen 802 DILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGE-LVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAF 880 (982)
T ss_pred hhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhh
Confidence 456655553332 2222123333455888888888876 66777889999999999988888999999999999998876
Q ss_pred CcccchhhhHHHHHhhccCCCCCccCCCCCccccccCCCCCCCCchhhhhccccceeeecchhhhHHHHHHHHHHHHHHc
Q 004960 580 GFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHT 659 (721)
Q Consensus 580 ~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~ 659 (721)
..+.++-.++..+++....+. ..-.|++|++++.++...+
T Consensus 881 ~vsd~~~ev~~~Il~l~~~d~----------------------------------------s~~vRRaAv~li~~lL~~t 920 (982)
T KOG4653|consen 881 QVSDFFHEVLQLILSLETTDG----------------------------------------SVLVRRAAVHLLAELLNGT 920 (982)
T ss_pred hhhHHHHHHHHHHHHHHccCC----------------------------------------chhhHHHHHHHHHHHHhcc
Confidence 666677777777776543321 1235999999999999999
Q ss_pred cccccchH----HHHHHHHHhc-ccCCChhHHHHHHHHHHHHHHHHHH
Q 004960 660 KSSYAPFL----EESLKILVRH-ASYFHEDVRYQAVFALKNILTAAHA 702 (721)
Q Consensus 660 ~~~~~~~~----~~~~~~l~~~-~~~~~~~vr~~a~~~l~~l~~~~~~ 702 (721)
|..+.|.+ -+....+... ..+.++.+|.-|..++..+-.+..+
T Consensus 921 g~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a~l~n 968 (982)
T KOG4653|consen 921 GEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQAALEN 968 (982)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHh
Confidence 98887743 3444445544 3467889999999999998877764
No 112
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=98.30 E-value=0.0034 Score=75.62 Aligned_cols=543 Identities=16% Similarity=0.190 Sum_probs=266.7
Q ss_pred hHHHHHHHHHHHHHhc----CCCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhh---hcCCCHHH--HHHHHHHHHHHH
Q 004960 17 NDARRQAEDQIKRLAK----DPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGH---WAKLSPQL--KQLVKQSLIESI 87 (721)
Q Consensus 17 ~~~r~~A~~~L~~~~~----~p~~~~~l~~il~~~~~~~vr~~a~~~l~~~i~~~---w~~~~~~~--~~~i~~~ll~~l 87 (721)
++....|-+.++.+.. .+.|+..++.-.....++.+|..|+..+...+... -+.-+-.. ...+.+.+...-
T Consensus 458 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~a 537 (2341)
T KOG0891|consen 458 TDDIQLAFKTLGGFKFSGYSLTLFVQQCVDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVA 537 (2341)
T ss_pred cHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHh
Confidence 3345556666665543 35777877777777789999999965555544321 11112222 333333444443
Q ss_pred hhcCCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHh
Q 004960 88 TLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKC 167 (721)
Q Consensus 88 ~~e~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~ 167 (721)
..++++.+|-..-..+. ....+.-.-|+.+..++..+.+..-..+..+...++.++...+..+.+.+.. ..+..
T Consensus 538 ia~~~~~i~~~v~~~l~---~~~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~---~~l~~ 611 (2341)
T KOG0891|consen 538 IADTDPDIRIRVLSSLN---ERFDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRK---TLLEL 611 (2341)
T ss_pred ccCCCcchhhhHHhhhc---cchhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHH---HHHHH
Confidence 44566766644444433 1111222456778888888888888888899999998887666443333322 22222
Q ss_pred hCCC-CCHHHHHHHH--HHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcccchhhh
Q 004960 168 LQDE-TSNRVRIAAL--KAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDS 244 (721)
Q Consensus 168 l~~~-~~~~vr~~a~--~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~ 244 (721)
++.- -+...|.... .-+..++... ......++..++..+...+.+.+..+.+.+..++++++...+......
T Consensus 612 ~s~l~~sg~~r~~~~~a~~~~~~i~~~-----~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~ 686 (2341)
T KOG0891|consen 612 LTELEFSGMARTKEESAKLLCELIISS-----PVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKW 686 (2341)
T ss_pred hchhhhcchHHhHHHHHHHhhHHHHHH-----HHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhc
Confidence 2210 1112232221 1111111111 111233333444444445566666777888888888887665433222
Q ss_pred HHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHH
Q 004960 245 VKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVID 324 (721)
Q Consensus 245 ~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~ 324 (721)
+..++....+.+.... ....|..++..+..+.+.....+.+..-.+.++..+...++... ....|.++...++
T Consensus 687 ~~~~~~~~~~~l~~~s-~~~rr~aslk~l~~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~------~~~ir~~~v~~~g 759 (2341)
T KOG0891|consen 687 VDELFSLIIKMLQDQS-SLGKRLAALKALGQLESSTGYVVDPYLDYPELLDILINILKTEQ------SSTIRREAIRLLG 759 (2341)
T ss_pred cchHHHHHHHHHHHhh-hhhchhHHHHHhhhhhcccceEecccccChHHHHHHHHHHhHhh------hhHHHHHHHHHhh
Confidence 2222222222222111 23456778888888876655433333334556666655554432 1355666666666
Q ss_pred HHHHHcCccccHhHHHH---HHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHH-HHHHH
Q 004960 325 TMALNLAKHVFPPVFEF---ASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVR-GAASF 400 (721)
Q Consensus 325 ~l~~~~~~~~~~~i~~~---l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr-~~a~~ 400 (721)
.++...+. ....... ........+|.. ..+....+. ...+ +...+ -..+..+...++|+..... .....
T Consensus 760 ~~g~~d~~--~~~~~~~~~~~~~~~~~~k~~~-~~~~~~~~~-~~~~-~e~~p--~v~I~~l~~~l~d~~~~~~l~~~~~ 832 (2341)
T KOG0891|consen 760 LLGALDPY--KHKVTEGTSASKISSEQIKSDI-DISLLESGV-NPSN-DEYYP--AVTIHALMGILKDPSLSIHHTAVAQ 832 (2341)
T ss_pred hhcccchh--HHHHHhhhhhHhhhhccccccc-hHHHHHhhh-hhhh-hhhhh--HHHHHHHhhhhhhhhhHHHHHHhhh
Confidence 44433221 1111111 111111111211 111000011 1111 11111 1112244455555532222 22334
Q ss_pred HHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCChhHHHHH
Q 004960 401 ALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETC 480 (721)
Q Consensus 401 ~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~ 480 (721)
+.-.+....+-....+.++++|.++..........+.....-+....--.+.++.+|.+.+...+..... .+.++...+
T Consensus 833 a~~~i~~~~~~~~~l~l~qv~~~~~~~~r~~~~~~~~f~~~q~~~~~~~~~~h~~~~~~~i~~~i~~~~~-~~~~l~~~~ 911 (2341)
T KOG0891|consen 833 AIMHIFQSLGLKCVLFLDQVIPTLIDVMRSCPPNLREFYFQQLTSLVAIVRQHIRPYMESIFTLIKDFWP-PDTSLQITI 911 (2341)
T ss_pred chhHHHHhhccchhhhHHHHHHHHHHHHHhcCcchhHHHHHhhhhhhhccchhHhhhhhhHHHHHHhhhh-hHHHHHHHH
Confidence 4444444444455567778888777655533333333322222222222233444555544444433332 345556666
Q ss_pred HHHHHHHHHHhhhcchhhHHHHHHHHHHHHhccCchhh---------------------------------------hhH
Q 004960 481 MSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDL---------------------------------------RSR 521 (721)
Q Consensus 481 l~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~---------------------------------------~~~ 521 (721)
...+..+....+..|..|++...+..........+.+. ..+
T Consensus 912 ~~l~~~i~~~l~~~f~~~l~~~~~~~l~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~hl~~~~~vkl~~~~~~~~~~~ 991 (2341)
T KOG0891|consen 912 ISLIEDIAVALGGEFKKYLPELLPTMLTVLQHDKSKDRVVSRKVLQSLQKFGSNLEQYLHLLLPPIVKLFEDPTVPLSIR 991 (2341)
T ss_pred HHHHHHHHHHHHhHHHHhhhhhccchheeecccccchHHHHHHhhHHHHhcCccHHhhHhhhccHHHHHHhhhhhhHHHH
Confidence 77777777778888888877766644332211111000 011
Q ss_pred HHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHcccCcccchhhhH
Q 004960 522 ARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVV 589 (721)
Q Consensus 522 ~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~ 589 (721)
..++.+.+.++..+ .+..+...+....++.+... ++++...+..++.+...+|..+.-+.|-+-
T Consensus 992 ~~~l~t~~~l~~~~---~~~~~~s~i~~~~~r~l~~s-~el~~~~~~~l~~l~~~~~~~~~i~~p~~~ 1055 (2341)
T KOG0891|consen 992 KSALITIGRLAQQV---DLSEYASRIIHPLVRVLSSS-PELRDVIMDTLIALVKQLGKDFAIFIPMVN 1055 (2341)
T ss_pred hhHHHHHHHHHHhh---HHHHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHHHHhhcCceeehHHHHH
Confidence 12222222222211 23445667777777777766 899999999999999999998877766655
No 113
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=0.0005 Score=69.97 Aligned_cols=288 Identities=17% Similarity=0.150 Sum_probs=169.0
Q ss_pred HhhcCCHHHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhh--hh--hcCC
Q 004960 214 CLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNS--LK--KHKL 289 (721)
Q Consensus 214 ~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~--~~--~~~~ 289 (721)
...+.+..++..|++.+..+.+ ..++- ..+.+...+.+++. ++.+|..|+..+.-..+..|.. .. ....
T Consensus 206 ~~~~~D~~Vrt~A~eglL~L~e-g~kL~----~~~Y~~A~~~lsD~--~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl 278 (823)
T KOG2259|consen 206 LEHDQDFRVRTHAVEGLLALSE-GFKLS----KACYSRAVKHLSDD--YEDVRKAAVQLVSVWGNRCPAPLERESEEEKL 278 (823)
T ss_pred HhcCCCcchHHHHHHHHHhhcc-ccccc----HHHHHHHHHHhcch--HHHHHHHHHHHHHHHHhcCCCcccchhhhhhh
Confidence 5567889999999999999887 22211 22334444444444 6789999987766665544211 10 1123
Q ss_pred hHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcCccccHhHHHHHHhhhcCCC--hh---hHhHHHHHHHHH
Q 004960 290 VIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNAS--PK---YREAAVTAIGII 364 (721)
Q Consensus 290 ~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~i~~~l~~~l~~~~--~~---~r~~al~~l~~i 364 (721)
....+..+...+.+.. +.+|..|..+++.+.+...+ ++ .+.+.+.+.+.. |+ .|-..+..=|..
T Consensus 279 ~D~aF~~vC~~v~D~s-------l~VRV~AaK~lG~~~~vSee-~i---~QTLdKKlms~lRRkr~ahkrpk~l~s~Gew 347 (823)
T KOG2259|consen 279 KDAAFSSVCRAVRDRS-------LSVRVEAAKALGEFEQVSEE-II---QQTLDKKLMSRLRRKRTAHKRPKALYSSGEW 347 (823)
T ss_pred HHHHHHHHHHHHhcCc-------eeeeehHHHHhchHHHhHHH-HH---HHHHHHHHhhhhhhhhhcccchHHHHhcCCc
Confidence 3445555555555443 88888888888776543221 22 222222222211 11 122222222211
Q ss_pred hhc------cH-HHHHHhHHHH-----HHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCC
Q 004960 365 SEG------CA-EWMKEKLESV-----LHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDES 432 (721)
Q Consensus 365 ~~~------~~-~~~~~~l~~i-----~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~ 432 (721)
+.+ .+ +.....-..+ +..++..+.|+.-.||.+|..+++.++..-+ .+-...+..|+..++|..
T Consensus 348 SsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP----~FA~~aldfLvDMfNDE~ 423 (823)
T KOG2259|consen 348 SSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSP----GFAVRALDFLVDMFNDEI 423 (823)
T ss_pred ccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCC----CcHHHHHHHHHHHhccHH
Confidence 111 11 1111111222 4578888999999999999999999998764 244567788889999998
Q ss_pred hHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHhc
Q 004960 433 DEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVL 512 (721)
Q Consensus 433 ~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~ 512 (721)
..||..|..+|..+..... .=++.++.++..+.+...++|+++-+.++..-- .-...++-.+..+.+.+..
T Consensus 424 ~~VRL~ai~aL~~Is~~l~-----i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~----~d~~~i~m~v~~lL~~L~k 494 (823)
T KOG2259|consen 424 EVVRLKAIFALTMISVHLA-----IREEQLRQILESLEDRSVDVREALRELLKNARV----SDLECIDMCVAHLLKNLGK 494 (823)
T ss_pred HHHHHHHHHHHHHHHHHhe-----ecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC----CcHHHHHHHHHHHHHHhhh
Confidence 8999999999999987632 224566677778888899999888766543211 1112233344444444433
Q ss_pred cCchhhhhHHHHHHHHHHHHHhhc
Q 004960 513 TNDEDLRSRARATELLGLVAESVG 536 (721)
Q Consensus 513 ~~~~~~~~~~~~~~~l~~l~~~~~ 536 (721)
- +.-|.....|++.+++.-+
T Consensus 495 y----PqDrd~i~~cm~~iGqnH~ 514 (823)
T KOG2259|consen 495 Y----PQDRDEILRCMGRIGQNHR 514 (823)
T ss_pred C----CCCcHHHHHHHHHHhccCh
Confidence 1 1123457788888876543
No 114
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.28 E-value=0.0011 Score=71.21 Aligned_cols=367 Identities=16% Similarity=0.183 Sum_probs=206.6
Q ss_pred CCHHHHHHHHHHHHHHHccccCC--CCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhh
Q 004960 91 HSAPVRRASANVVSIIAKYAVPA--GEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCL 168 (721)
Q Consensus 91 ~~~~vr~~~~~~l~~i~~~~~~~--~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~l 168 (721)
++..+| .+..++..++...... -.-.++++.|...+++++.+....++.++..+.-...+.-.-.-..+++.+.+.+
T Consensus 262 QeqLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl 340 (708)
T PF05804_consen 262 QEQLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLL 340 (708)
T ss_pred HHHHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHh
Confidence 344444 5567777777532110 0135678899999999888888888899988773321111112246778888888
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcc--cch--hhh
Q 004960 169 QDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPA--PLL--GDS 244 (721)
Q Consensus 169 ~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~--~~~--~~~ 244 (721)
.+ ++..++..+++.|.++.....-..... -.+++|.++.. +. ++..+..++.+|..+..... ..+ ...
T Consensus 341 ~s-~~~~l~~~aLrlL~NLSfd~~~R~~mV-~~GlIPkLv~L----L~--d~~~~~val~iLy~LS~dd~~r~~f~~Tdc 412 (708)
T PF05804_consen 341 PS-ENEDLVNVALRLLFNLSFDPELRSQMV-SLGLIPKLVEL----LK--DPNFREVALKILYNLSMDDEARSMFAYTDC 412 (708)
T ss_pred cC-CCHHHHHHHHHHHHHhCcCHHHHHHHH-HCCCcHHHHHH----hC--CCchHHHHHHHHHHhccCHhhHHHHhhcch
Confidence 88 888899999999998865432211111 24678888874 43 33455567777777765432 111 233
Q ss_pred HHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHh--hhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHH
Q 004960 245 VKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYN--SLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEV 322 (721)
Q Consensus 245 ~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~ 322 (721)
++.++..++. ++ ++.+...++.++.+++..... .+-+.+.++.++ ....... ......+
T Consensus 413 Ip~L~~~Ll~---~~--~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~----~ra~~~~----------D~lLlKl 473 (708)
T PF05804_consen 413 IPQLMQMLLE---NS--EEEVQLELIALLINLALNKRNAQLMCEGNGLQSLM----KRALKTR----------DPLLLKL 473 (708)
T ss_pred HHHHHHHHHh---CC--CccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHH----HHHHhcc----------cHHHHHH
Confidence 4555554432 22 233334445555555533221 111112233332 2222211 0122345
Q ss_pred HHHHHHHcC--ccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhcc-H-HHHHHhH--HHHHHHHHhhcCCC--CHhH
Q 004960 323 IDTMALNLA--KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGC-A-EWMKEKL--ESVLHIVLGALRDP--EQFV 394 (721)
Q Consensus 323 l~~l~~~~~--~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~-~-~~~~~~l--~~i~~~l~~~l~d~--~~~v 394 (721)
+..++..-| +..+...+.-+...+.+.+ .-+..+.++|.++.-. + ......+ ..++|.+.+.|... ++.+
T Consensus 474 IRNiS~h~~~~k~~f~~~i~~L~~~v~~~~--~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl 551 (708)
T PF05804_consen 474 IRNISQHDGPLKELFVDFIGDLAKIVSSGD--SEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDL 551 (708)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHhhcCC--cHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHH
Confidence 555555543 1222333333333344332 2345566666665432 1 1222222 25677777777532 4567
Q ss_pred HHHHHHHHHHHHhhhhHHHHHhh--hhHHHHHHHhccCC--ChHHHHHHHHHHHHHHHhhh--hccccchHHHHHHHHHh
Q 004960 395 RGAASFALGQFAEYLQPEIVSHY--ESVLPCILNALEDE--SDEVKEKSYYALAAFCEDMG--EEILPFLDPLMGKLLAA 468 (721)
Q Consensus 395 r~~a~~~l~~l~~~~~~~~~~~~--~~~l~~l~~~l~~~--~~~v~~~a~~al~~l~~~~~--~~~~~~~~~i~~~l~~~ 468 (721)
...++..+|.++.. +.....+ .++++.++..|+.. +.+.....+.++..++..-. +.+... .++...+..+
T Consensus 552 ~LE~Vi~~gtla~d--~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~-~~~~~ylidL 628 (708)
T PF05804_consen 552 LLEVVILLGTLASD--PECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKE-TEIPAYLIDL 628 (708)
T ss_pred HHHHHHHHHHHHCC--HHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhc-cchHHHHHHH
Confidence 77888889988865 3334443 57888888887643 45666677888888876532 222211 3577889999
Q ss_pred hcCCChhHHHHHHHHHHHHHHH
Q 004960 469 LENSPRNLQETCMSAIGSVAAA 490 (721)
Q Consensus 469 l~~~~~~v~~~~l~~l~~l~~~ 490 (721)
+.+.+..+|..+=.|+..++..
T Consensus 629 ~~d~N~~ir~~~d~~Ldii~e~ 650 (708)
T PF05804_consen 629 MHDKNAEIRKVCDNALDIIAEY 650 (708)
T ss_pred hcCCCHHHHHHHHHHHHHHHHh
Confidence 9999999988877777766654
No 115
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=0.00035 Score=68.79 Aligned_cols=264 Identities=16% Similarity=0.155 Sum_probs=156.2
Q ss_pred cchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhh
Q 004960 117 PDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAE 196 (721)
Q Consensus 117 ~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~ 196 (721)
.+++..+.+...+++...|..|+.++++.....|.....+.+.++..++.+|-|+.+.+|...++.+|..+.+...+. +
T Consensus 257 ~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~-~ 335 (533)
T KOG2032|consen 257 GSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASND-D 335 (533)
T ss_pred HHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhc-c
Confidence 445666666667788899999999999999988888888999999999999988678999999999999888765322 1
Q ss_pred HHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCccc----chhhhHH-HHHHHHHHhhcCCCCChHHHHHHHH
Q 004960 197 VVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAP----LLGDSVK-SIVHFSLEVSSSHNLEPNTRHQAIQ 271 (721)
Q Consensus 197 ~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~----~~~~~~~-~l~~~~~~~~~~~~~~~~~r~~a~~ 271 (721)
...++-.+.-.++....+.+++.+..++..++.++...+. +|...+. .+.++++ .+.+. .+.+- .|+.
T Consensus 336 ---l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lll-hl~d~--~p~va-~ACr 408 (533)
T KOG2032|consen 336 ---LESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLL-HLQDP--NPYVA-RACR 408 (533)
T ss_pred ---hhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhcccccee-eeCCC--ChHHH-HHHH
Confidence 3344444444556677788999999999999988765432 2222222 2223222 22222 33322 2322
Q ss_pred HHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcCccccHhHHHHHHh---hhcC
Q 004960 272 IISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASV---SCQN 348 (721)
Q Consensus 272 ~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~i~~~l~~---~l~~ 348 (721)
.....+ .|.... ..+..+++...+. .-+ ....+....+..... +.+.++-++.. .+-+
T Consensus 409 ~~~~~c--~p~l~r------ke~~~~~q~~ld~--------~~~--~~q~Fyn~~c~~L~~-i~~d~l~~~~t~~~~~f~ 469 (533)
T KOG2032|consen 409 SELRTC--YPNLVR------KELYHLFQESLDT--------DMA--RFQAFYNQWCIQLNH-IHPDILMLLLTEDQHIFS 469 (533)
T ss_pred HHHHhc--CchhHH------HHHHHHHhhhhHH--------hHH--HHHHHHHHHHHHHhh-hCHHHHHHHHHhchhhee
Confidence 222221 111111 1111111110010 011 111222222211111 22233332221 1234
Q ss_pred CCh-hhHhHHHHHHHHHhhccHHHHHHh--HHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHh
Q 004960 349 ASP-KYREAAVTAIGIISEGCAEWMKEK--LESVLHIVLGALRDPEQFVRGAASFALGQFAE 407 (721)
Q Consensus 349 ~~~-~~r~~al~~l~~i~~~~~~~~~~~--l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 407 (721)
..| .+|.++...-+....+.....-++ ...+...+-.+..|+-|.|+..|..+++.+..
T Consensus 470 sswe~vr~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 470 SSWEQVREAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred cchHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 556 788888888888887765544443 34556677777789999999999999988754
No 116
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=0.00011 Score=76.87 Aligned_cols=200 Identities=18% Similarity=0.191 Sum_probs=147.5
Q ss_pred HHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchH
Q 004960 380 LHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLD 459 (721)
Q Consensus 380 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~ 459 (721)
+...+..+.|+.+.+|..++..+..+.+.-.+.-......++...+..+.|.++.|--+|..++..+++..++.+.|
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~--- 805 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILP--- 805 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhHH---
Confidence 55566778899999999999999999986544334455789999999999999999999999999999886654322
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhh
Q 004960 460 PLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRAR 539 (721)
Q Consensus 460 ~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 539 (721)
.+.....+.-+....+.+-.+-++|..++...|+-+..|+..++..+.+.+. +++...|..++..+|.++..... .
T Consensus 806 dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvr---epd~~~RaSS~a~lg~Lcq~~a~-~ 881 (982)
T KOG4653|consen 806 DLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVR---EPDHEFRASSLANLGQLCQLLAF-Q 881 (982)
T ss_pred HHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcC---CchHHHHHhHHHHHHHHHHHHhh-h
Confidence 2222222211222245666777999999999999999999977776666554 55667788888888888865432 2
Q ss_pred ccCChHHHHHHHHhccC-CCChhhHHHHHHHHHHHHHHcccCcccchh
Q 004960 540 MEPILPPFVEAAISGFG-LEFSELREYTHGFFSNIAGVLEDGFAQYLP 586 (721)
Q Consensus 540 ~~~~~~~i~~~l~~~l~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~ 586 (721)
...++.+++..+++..+ ++...+|++|...+..+-...|.+..|++.
T Consensus 882 vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr 929 (982)
T KOG4653|consen 882 VSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILR 929 (982)
T ss_pred hhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHH
Confidence 23355666666666555 568889999999999999999987766543
No 117
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.24 E-value=0.0019 Score=64.91 Aligned_cols=350 Identities=15% Similarity=0.123 Sum_probs=187.4
Q ss_pred CCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhc---CCCHH--HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHc
Q 004960 34 PQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWA---KLSPQ--LKQLVKQSLIESITLEHSAPVRRASANVVSIIAK 108 (721)
Q Consensus 34 p~~~~~l~~il~~~~~~~vr~~a~~~l~~~i~~~w~---~~~~~--~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~ 108 (721)
|.++..+++++....++.+.++...++--.+...-. .+-+. .....-..++..|.+ ++..+...++.+++.++.
T Consensus 52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~-~d~~i~~~a~~iLt~l~~ 130 (429)
T cd00256 52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNR-QDQFIVHMSFSILAKLAC 130 (429)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcC-CchhHHHHHHHHHHHHHh
Confidence 678889999998877888999998888777764211 11000 001122345566655 689999999999999986
Q ss_pred cccCCCCCc----chHHHHHHhccCC-cHHHHHHHHHHHHHhhhhhh--hcccccHHHHHHHHHHhhCCCC-CHHHHHHH
Q 004960 109 YAVPAGEWP----DLLPFLFQFSQSE-QEEHREVALILFSSLTETIG--QTFRPHFADMQALLLKCLQDET-SNRVRIAA 180 (721)
Q Consensus 109 ~~~~~~~~~----~ll~~l~~~l~~~-~~~~~~~al~~l~~i~~~~~--~~~~~~~~~l~~~l~~~l~~~~-~~~vr~~a 180 (721)
.... ..-. .+++.+.+.++++ +......++.++..+..... ..+.. ...++.+...++... +.+....+
T Consensus 131 ~~~~-~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~--~~~v~~L~~~L~~~~~~~Ql~Y~~ 207 (429)
T cd00256 131 FGLA-KMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVL--ADGVPTLVKLLSNATLGFQLQYQS 207 (429)
T ss_pred cCcc-ccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHH--ccCHHHHHHHHhhccccHHHHHHH
Confidence 5422 1222 2444555555543 35667788889988875432 11110 113455555554323 55777777
Q ss_pred HHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcc------cchhhhHH-HHHHHHH
Q 004960 181 LKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPA------PLLGDSVK-SIVHFSL 253 (721)
Q Consensus 181 ~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~------~~~~~~~~-~l~~~~~ 253 (721)
+-|+--+. +.++..+.....+++|.+++.+... ..+++..-++.++.+++.... .+....+. ++.+ ++
T Consensus 208 ll~lWlLS-F~~~~~~~~~~~~~i~~l~~i~k~s---~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l 282 (429)
T cd00256 208 IFCIWLLT-FNPHAAEVLKRLSLIQDLSDILKES---TKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK-TL 282 (429)
T ss_pred HHHHHHHh-ccHHHHHhhccccHHHHHHHHHHhh---hhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH-HH
Confidence 77665443 2212111112246788888766544 356677778888888887531 11111222 1222 22
Q ss_pred Hhhc-CCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcCc
Q 004960 254 EVSS-SHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAK 332 (721)
Q Consensus 254 ~~~~-~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~ 332 (721)
+.++ ....|+++ ...+..+....+..-..+. -+......+..-.- +|+|......+...=+..+.+
T Consensus 283 ~~L~~rk~~DedL-~edl~~L~e~L~~~~k~lt---sfD~Y~~El~sg~L---------~WSp~H~se~FW~EN~~kf~~ 349 (429)
T cd00256 283 QSLEQRKYDDEDL-TDDLKFLTEELKNSVQDLS---SFDEYKSELRSGRL---------HWSPVHKSEKFWRENADRLNE 349 (429)
T ss_pred HHHhcCCCCcHHH-HHHHHHHHHHHHHHHHHcC---CHHHHHHHHhcCCc---------cCCCCCCCchHHHHHHHHHHh
Confidence 2333 33334443 3444444444432211111 11122111111111 133333222333332332322
Q ss_pred cccHhHHHHHHhhh-cCCChhhHhHHHHHHHHHhhccH--HHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHh
Q 004960 333 HVFPPVFEFASVSC-QNASPKYREAAVTAIGIISEGCA--EWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAE 407 (721)
Q Consensus 333 ~~~~~i~~~l~~~l-~~~~~~~r~~al~~l~~i~~~~~--~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 407 (721)
.- -.++..+.+.+ .+.++..-..||.=+|.++...| ..+...+. .=..++++++++++.||+.|+.|++.+..
T Consensus 350 ~~-~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg-~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 350 KN-YELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLG-GKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred cc-hHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcC-cHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 11 12444444444 35566777788888999988754 33322221 33568889999999999999999998743
No 118
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=0.0091 Score=61.25 Aligned_cols=146 Identities=18% Similarity=0.228 Sum_probs=121.6
Q ss_pred hHHHHHHHHhc-CCChHHHHHHHHHHHHHhcCCCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhcCCCHHHHHHHHH
Q 004960 3 QSLELLLIQFL-MPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQ 81 (721)
Q Consensus 3 ~~l~~ll~~~~-s~d~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i~~ 81 (721)
.+++.+...++ +.|+..|.+||..|.++..+|+.+..|.-++.+++.|.-+..|+..|-+.+..+- .+|-+.+-.|++
T Consensus 5 aqLe~lCk~LY~s~D~~~R~~AE~~L~e~s~speclskCqlll~~gs~pYs~mlAst~L~Klvs~~t-~lpl~qrldir~ 83 (1082)
T KOG1410|consen 5 AQLESLCKDLYESTDPTARHRAEKALAELSESPECLSKCQLLLERGSYPYSQMLASTCLMKLVSRKT-PLPLEQRLDIRN 83 (1082)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHcCCC-CCcHHHHHHHHH
Confidence 35677777775 6799999999999999999999999999999888889999999999999887764 689999999999
Q ss_pred HHHHHHhhc-C--CHHHHHHHHHHHHHHHccccCCC-----CCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhh
Q 004960 82 SLIESITLE-H--SAPVRRASANVVSIIAKYAVPAG-----EWPDLLPFLFQFSQSEQEEHREVALILFSSLTETI 149 (721)
Q Consensus 82 ~ll~~l~~e-~--~~~vr~~~~~~l~~i~~~~~~~~-----~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~ 149 (721)
-+++.+.+- | .+.+-..+++.++.+.+..|-.. .+.+.+..+...++.++.+....++.++..+....
T Consensus 84 Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLsqLvqem 159 (1082)
T KOG1410|consen 84 YILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILSQLVQEM 159 (1082)
T ss_pred HHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHHHHHHHHHHh
Confidence 999999862 2 46788899999999987655321 35677888888888888888888888888888653
No 119
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=98.22 E-value=9.1e-06 Score=70.78 Aligned_cols=129 Identities=27% Similarity=0.408 Sum_probs=93.2
Q ss_pred CHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhh----------------cccc
Q 004960 92 SAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQ----------------TFRP 155 (721)
Q Consensus 92 ~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~----------------~~~~ 155 (721)
++.++++++.+++.|+.+++|. .||++++.+.+.+++ ++.....++.++..+.+...+ .+..
T Consensus 1 p~~i~~kl~~~l~~i~~~~~P~-~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~ 78 (148)
T PF08389_consen 1 PPFIRNKLAQVLAEIAKRDWPQ-QWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRS 78 (148)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTT-TSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHChh-hCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHH
Confidence 3578999999999999999996 899999999999987 467777889899888876542 1233
Q ss_pred cHHHHHHHHHHhhCCCCC---HHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 004960 156 HFADMQALLLKCLQDETS---NRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIF 230 (721)
Q Consensus 156 ~~~~l~~~l~~~l~~~~~---~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l 230 (721)
..+.+++.+.+.+....+ ..+...+++|+..++.+.+.. .... .++++.+++ .+. +++.+..|++||
T Consensus 79 ~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~-~i~~-~~~l~~~~~----~l~--~~~~~~~A~~cl 148 (148)
T PF08389_consen 79 NSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIE-LIIN-SNLLNLIFQ----LLQ--SPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HH-HHHS-SSHHHHHHH----HTT--SCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHH-Hhcc-HHHHHHHHH----HcC--CHHHHHHHHHhC
Confidence 456777788887765222 788999999999999987432 1111 234554544 553 455577777765
No 120
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.14 E-value=0.014 Score=59.97 Aligned_cols=466 Identities=13% Similarity=0.077 Sum_probs=233.7
Q ss_pred CChhHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHccccC-CCC--CcchHHHH
Q 004960 48 KTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLE-HSAPVRRASANVVSIIAKYAVP-AGE--WPDLLPFL 123 (721)
Q Consensus 48 ~~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i~~~ll~~l~~e-~~~~vr~~~~~~l~~i~~~~~~-~~~--~~~ll~~l 123 (721)
.+|+.-.-|..-.++.+..+-++.....+-.-.+.++..+..+ ....+.+..+..++..+..+-. ... -...++.+
T Consensus 21 ~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~L 100 (678)
T KOG1293|consen 21 LDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELLKL 100 (678)
T ss_pred CCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHHHH
Confidence 4566666677777887766544433333333334455554432 4566677888888887754321 001 13357888
Q ss_pred HHhccCCc-HHHHHHHHHHHHHhhhhhhh---cccccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHH
Q 004960 124 FQFSQSEQ-EEHREVALILFSSLTETIGQ---TFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVK 199 (721)
Q Consensus 124 ~~~l~~~~-~~~~~~al~~l~~i~~~~~~---~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 199 (721)
++++.+.+ .+.+...+.++..+.+..+. ....+...+++.+.-.+..+.....+..+.. .. .+...+++..+.
T Consensus 101 l~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~-~a-~~s~~~~hq~Il- 177 (678)
T KOG1293|consen 101 LQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSR-AA-HLSSTKDHQLIL- 177 (678)
T ss_pred HHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhh-hc-cccccchhhhee-
Confidence 99999888 78899999999999987642 2233456666666555542122222221111 11 111111111110
Q ss_pred HHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHH---HHhcCcccchhhhHHH-----HHH--HHHHhhcCCCCChHHHHHH
Q 004960 200 FREFIPSILNVSRQCLASGEEDVAVIAFEIFD---ELIESPAPLLGDSVKS-----IVH--FSLEVSSSHNLEPNTRHQA 269 (721)
Q Consensus 200 ~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~---~l~~~~~~~~~~~~~~-----l~~--~~~~~~~~~~~~~~~r~~a 269 (721)
+..-++.-+.. ++...+...|.+|..++. .+....+..--..+.. +.. .......+. +...|..+
T Consensus 178 ~Na~i~ekI~~---l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~--~~s~~l~s 252 (678)
T KOG1293|consen 178 CNAGILEKINI---LLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDP--DFSERLRS 252 (678)
T ss_pred ccccchhhHHH---HHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCC--CccHHHHH
Confidence 11222222222 222235567778888877 3333332211111111 111 111233344 44456666
Q ss_pred HHHHHHHHHHhHhh---hhhcCChH----HHH-HHHHhhhccCCCCCCCCCCcHHHH--HHHHHHH-HHHHcC-----cc
Q 004960 270 IQIISWLAKYKYNS---LKKHKLVI----PIL-QVMCPLLAESNEAGEDDDLAPDRA--AAEVIDT-MALNLA-----KH 333 (721)
Q Consensus 270 ~~~l~~l~~~~~~~---~~~~~~~~----~il-~~l~~~l~~~~~~~~~~~~~~~~~--a~~~l~~-l~~~~~-----~~ 333 (721)
++++..+.+..... .+...+.+ .+. -.+...+.++- ++.... ...|+.. +.+... ..
T Consensus 253 l~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~-------~s~l~~~~~l~c~~a~~~sklq~~~~e~~ 325 (678)
T KOG1293|consen 253 LECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPG-------LSTLDHTNVLFCILARFASKLQLPQHEEA 325 (678)
T ss_pred HHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCc-------eeehhhhhhhHHHHHHHHHhhhhHHhhhh
Confidence 77666666543111 00000010 010 01111111111 111111 1122211 222222 11
Q ss_pred ccHhHHHHHHh--hhcCCChhhHhHHHHH---HHHHhhccHHHHHHhH-HH-HHHHHHhhcCCCCHhHHHHHHHHHHHHH
Q 004960 334 VFPPVFEFASV--SCQNASPKYREAAVTA---IGIISEGCAEWMKEKL-ES-VLHIVLGALRDPEQFVRGAASFALGQFA 406 (721)
Q Consensus 334 ~~~~i~~~l~~--~l~~~~~~~r~~al~~---l~~i~~~~~~~~~~~l-~~-i~~~l~~~l~d~~~~vr~~a~~~l~~l~ 406 (721)
..+.+.+.+.. -+.....+.|.-++.- ......+.......++ +. ....+....-..+..++.+|+.++..++
T Consensus 326 ~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~s 405 (678)
T KOG1293|consen 326 TLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFS 405 (678)
T ss_pred hhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHH
Confidence 22223333222 2334444444433221 1112222212222222 11 1222233333557778889999988887
Q ss_pred hhhhHHHHH--hhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchH-HHHHHHHHhhcCCChhHHHHHHHH
Q 004960 407 EYLQPEIVS--HYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLD-PLMGKLLAALENSPRNLQETCMSA 483 (721)
Q Consensus 407 ~~~~~~~~~--~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~-~i~~~l~~~l~~~~~~v~~~~l~~ 483 (721)
..... ... .-.+++..+++.+.+++..|...+.+++.+++-.+++--..++. ..++.+...+.+.+..+|...+++
T Consensus 406 rsV~a-L~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~ 484 (678)
T KOG1293|consen 406 RSVSA-LRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWV 484 (678)
T ss_pred HHHHH-HHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHH
Confidence 76532 221 12467888888889999999999999999998777543223332 667778888889999999999999
Q ss_pred HHHHHHHhhhcc--hhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHH
Q 004960 484 IGSVAAAAEQAF--IPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVA 532 (721)
Q Consensus 484 l~~l~~~~~~~~--~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~ 532 (721)
+..+.-...+.+ .++...-...+..+ .+++++.+.+.++..+..+.
T Consensus 485 Lr~l~f~~de~~k~~~~~ki~a~~i~~l---~nd~d~~Vqeq~fqllRNl~ 532 (678)
T KOG1293|consen 485 LRHLMFNCDEEEKFQLLAKIPANLILDL---INDPDWAVQEQCFQLLRNLT 532 (678)
T ss_pred HHHHHhcchHHHHHHHHHHhhHHHHHHH---HhCCCHHHHHHHHHHHHHhh
Confidence 988765554332 22222222233332 36788888888888887775
No 121
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=0.017 Score=60.66 Aligned_cols=110 Identities=12% Similarity=0.108 Sum_probs=64.6
Q ss_pred cCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhh
Q 004960 69 AKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTET 148 (721)
Q Consensus 69 ~~~~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~ 148 (721)
++++.....++-=.+..++.+ .+...|+..-.++..+..... .---....+..-....++..|..|++.|..+...
T Consensus 55 e~~~~~eate~ff~~tKlfQs-kd~~LRr~vYl~Ikels~ise---dviivtsslmkD~t~~~d~yr~~AiR~L~~I~d~ 130 (865)
T KOG1078|consen 55 EHFGETEATELFFAITKLFQS-KDVSLRRMVYLAIKELSKISE---DVIIVTSSLMKDMTGKEDLYRAAAIRALCSIIDG 130 (865)
T ss_pred cccchhhHHHHHHHHHHHHhh-cCHHHHHHHHHHHhhccccch---hhhhhhHHHHhhccCCCcchhHHHHHHHHhhcCc
Confidence 345554444444344555554 788999888878777764321 1112344444445556667888888888887743
Q ss_pred hhhcccccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhh
Q 004960 149 IGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLE 189 (721)
Q Consensus 149 ~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~ 189 (721)
. ....+-..+.+++-+ +++.++.+|+-.-..++.
T Consensus 131 ~------m~~~iery~kqaivd-~~~avSsaalvss~hll~ 164 (865)
T KOG1078|consen 131 T------MLQAIERYMKQAIVD-KNPAVSSAALVSSYHLLP 164 (865)
T ss_pred c------hhHHHHHHHHhHeec-cccccchHHHHHHhhhhc
Confidence 2 234444555666667 777777666544444443
No 122
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=0.00097 Score=61.95 Aligned_cols=335 Identities=16% Similarity=0.185 Sum_probs=187.7
Q ss_pred HHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhh-----cccccHHHHHHHHHHhhCC
Q 004960 96 RRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQ-----TFRPHFADMQALLLKCLQD 170 (721)
Q Consensus 96 r~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~-----~~~~~~~~l~~~l~~~l~~ 170 (721)
...+..++..+.+...+...-|.++|.+...+..++..++..++..++.+.++.+. .+.-.-.++++.+..++..
T Consensus 60 ttlcVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgg 139 (524)
T KOG4413|consen 60 TTLCVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGG 139 (524)
T ss_pred hhhHHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcC
Confidence 34477778888775555557789999999999998989999999999999988752 1111236788999999988
Q ss_pred CCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcccchhhhH-HHHH
Q 004960 171 ETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSV-KSIV 249 (721)
Q Consensus 171 ~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~l~ 249 (721)
.+..|..+|.+.+.++..+...- +.....+++..+-. ......-+.-.|...+..+.++.+..+...+..- ..++
T Consensus 140 -eddeVAkAAiesikrialfpaal-eaiFeSellDdlhl--rnlaakcndiaRvRVleLIieifSiSpesaneckkSGLl 215 (524)
T KOG4413|consen 140 -EDDEVAKAAIESIKRIALFPAAL-EAIFESELLDDLHL--RNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLL 215 (524)
T ss_pred -CcHHHHHHHHHHHHHHHhcHHHH-HHhcccccCChHHH--hHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHH
Confidence 88999999999998886653110 00000011111000 0000111334566677777777776654332221 2344
Q ss_pred HHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCCh--HHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHH
Q 004960 250 HFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLV--IPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMA 327 (721)
Q Consensus 250 ~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~--~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~ 327 (721)
..+..-+...+ +.-++..+++....+++..... +|+ ..+++.+...+.-.+.+. ++.. .++...+
T Consensus 216 dlLeaElkGte-DtLVianciElvteLaeteHgr----eflaQeglIdlicnIIsGadsdP----fekf----ralmgfg 282 (524)
T KOG4413|consen 216 DLLEAELKGTE-DTLVIANCIELVTELAETEHGR----EFLAQEGLIDLICNIISGADSDP----FEKF----RALMGFG 282 (524)
T ss_pred HHHHHHhcCCc-ceeehhhHHHHHHHHHHHhhhh----hhcchhhHHHHHHHHhhCCCCCc----HHHH----HHHHHHH
Confidence 44443333221 4457888999988888643221 222 235555666555544221 1111 1222333
Q ss_pred HHcCcc------------ccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccH--HHHHHhHHHHHHHHHhhcCCCCH-
Q 004960 328 LNLAKH------------VFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCA--EWMKEKLESVLHIVLGALRDPEQ- 392 (721)
Q Consensus 328 ~~~~~~------------~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~--~~~~~~l~~i~~~l~~~l~d~~~- 392 (721)
+.+++. -++..++...+.++..++...++|+.++|.+..+.. +.+...-++-...++....|.+.
T Consensus 283 kffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnah 362 (524)
T KOG4413|consen 283 KFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAH 362 (524)
T ss_pred HHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhccccc
Confidence 333321 112234444556778889999999999999987653 22222223333333333334432
Q ss_pred hHHHHHHHHHHHHHhhhh--HH-H---------HHh-hh--------hHHHHHHHhccCCChHHHHHHHHHHHHHH
Q 004960 393 FVRGAASFALGQFAEYLQ--PE-I---------VSH-YE--------SVLPCILNALEDESDEVKEKSYYALAAFC 447 (721)
Q Consensus 393 ~vr~~a~~~l~~l~~~~~--~~-~---------~~~-~~--------~~l~~l~~~l~~~~~~v~~~a~~al~~l~ 447 (721)
--+..+.++|..++.... ++ + ... ++ +=+..+...++.+.++++.++...+..++
T Consensus 363 akqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAia 438 (524)
T KOG4413|consen 363 AKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIA 438 (524)
T ss_pred chHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHH
Confidence 234577888888765432 11 0 000 00 11222334456667777777777776664
No 123
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=98.14 E-value=4.1e-05 Score=66.12 Aligned_cols=123 Identities=21% Similarity=0.316 Sum_probs=97.8
Q ss_pred hhhHHHHHHHhccCCChHHHHHHHHHHHHHHHh-hhhccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHH---HHHhh
Q 004960 417 YESVLPCILNALEDESDEVKEKSYYALAAFCED-MGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSV---AAAAE 492 (721)
Q Consensus 417 ~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~-~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l---~~~~~ 492 (721)
++..+|.++++|.+....-+.-|...+..+++. .++.+.|.+++++..|.+.+++.++++...++.++..+ ....|
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG 115 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG 115 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 568899999999988777888899999999999 67889999999999999999999999999999999999 67788
Q ss_pred hcchhhHHHHHHHHHHHHhccC--------chhhhhHHHHHHHHHHHHHhhchhh
Q 004960 493 QAFIPYAERVLELLKIFMVLTN--------DEDLRSRARATELLGLVAESVGRAR 539 (721)
Q Consensus 493 ~~~~~~~~~i~~~l~~~l~~~~--------~~~~~~~~~~~~~l~~l~~~~~~~~ 539 (721)
+.+.||+.+++|.+.-+.+... ....+++...-+++..+-+.-|++.
T Consensus 116 ~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA 170 (183)
T PF10274_consen 116 EALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDA 170 (183)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChhH
Confidence 9999999999999875554320 0112334444556666655555543
No 124
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=98.13 E-value=0.046 Score=65.32 Aligned_cols=291 Identities=9% Similarity=0.093 Sum_probs=164.2
Q ss_pred CChhHHHHHHHHHHHhhhhhhcC--CC-HHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccc--CCCCCcchHHH
Q 004960 48 KTPNVRQLAAVLLRKKITGHWAK--LS-PQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAV--PAGEWPDLLPF 122 (721)
Q Consensus 48 ~~~~vr~~a~~~l~~~i~~~w~~--~~-~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~--~~~~~~~ll~~ 122 (721)
.+..++.+|.-.||+.-.+..+. ++ -..+..+.+-+...+.+..+..+|..+.+++..+..... -...|+.++..
T Consensus 1149 ~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~V 1228 (1780)
T PLN03076 1149 ENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMV 1228 (1780)
T ss_pred cchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHH
Confidence 46778999998888765543221 11 123444445555556655788999999999998764221 12589999999
Q ss_pred HHHhccCCcHHHHHHHHHHHHHhhhhhhhcc----cccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcC------
Q 004960 123 LFQFSQSEQEEHREVALILFSSLTETIGQTF----RPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTN------ 192 (721)
Q Consensus 123 l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~----~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~------ 192 (721)
+.....+.++.....|+.++..|+...-..+ ...+.+++..+.++-+...+.++-..|+..+..+..+..
T Consensus 1229 Ls~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~ 1308 (1780)
T PLN03076 1229 FTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGS 1308 (1780)
T ss_pred HHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccc
Confidence 9988888888888899999998887643322 235567777766666542345555566655553311110
Q ss_pred ------------------Ch-h------hHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcccchh-----
Q 004960 193 ------------------DG-A------EVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLG----- 242 (721)
Q Consensus 193 ------------------~~-~------~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~----- 242 (721)
+. . .......++-+++..+.....+.+.++|..|++.|-++....+..|.
T Consensus 1309 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~ 1388 (1780)
T PLN03076 1309 SSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWE 1388 (1780)
T ss_pred cccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHH
Confidence 00 0 00011123334555555566678999999999999988876654443
Q ss_pred hhHHHHHHHHHHhhcCC---------------------CCChHHHHHHHHHHHHHHHHhHhhhhh-cCChHHHHHHHHhh
Q 004960 243 DSVKSIVHFSLEVSSSH---------------------NLEPNTRHQAIQIISWLAKYKYNSLKK-HKLVIPILQVMCPL 300 (721)
Q Consensus 243 ~~~~~l~~~~~~~~~~~---------------------~~~~~~r~~a~~~l~~l~~~~~~~~~~-~~~~~~il~~l~~~ 300 (721)
..+..++-.+++.++.. +.+.-....+..++..++......+.. ..+++.++..+...
T Consensus 1389 ~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~c 1468 (1780)
T PLN03076 1389 RVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSF 1468 (1780)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444554444443211 000112233334444444433332211 01233444444333
Q ss_pred hccCCCCCCCCCCcHHHHHHHHHHHHHHHcC----ccccHhHHHHHHhh
Q 004960 301 LAESNEAGEDDDLAPDRAAAEVIDTMALNLA----KHVFPPVFEFASVS 345 (721)
Q Consensus 301 l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~----~~~~~~i~~~l~~~ 345 (721)
++... ....+.+..|+..+....| +..+..++..+.+.
T Consensus 1469 i~q~n-------~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~~~~~l 1510 (1780)
T PLN03076 1469 IKRPH-------QSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLSLKEA 1510 (1780)
T ss_pred HcCch-------HHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHH
Confidence 44332 4566777788887776555 33444555444443
No 125
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.12 E-value=0.00018 Score=64.16 Aligned_cols=109 Identities=17% Similarity=0.262 Sum_probs=86.4
Q ss_pred CHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhc
Q 004960 391 EQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALE 470 (721)
Q Consensus 391 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~ 470 (721)
||.||..++.++|.++...+. .+++.+|.+...|.|+++.||..|+..|..++.. .....-+.++..+..++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~----~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~---d~ik~k~~l~~~~l~~l~ 73 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN----LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE---DMIKVKGQLFSRILKLLV 73 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH----HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc---CceeehhhhhHHHHHHHc
Confidence 688999999999999988763 5667788889999999999999999999999865 333444566677778889
Q ss_pred CCChhHHHHHHHHHHHHHHH-hhhcchhhHHHHHHHH
Q 004960 471 NSPRNLQETCMSAIGSVAAA-AEQAFIPYAERVLELL 506 (721)
Q Consensus 471 ~~~~~v~~~~l~~l~~l~~~-~~~~~~~~~~~i~~~l 506 (721)
++++.+|..|..++..+... .++.+...+++++..+
T Consensus 74 D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l 110 (178)
T PF12717_consen 74 DENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSL 110 (178)
T ss_pred CCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 99999999999999999887 4454544455444443
No 126
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.12 E-value=0.0036 Score=61.48 Aligned_cols=475 Identities=14% Similarity=0.114 Sum_probs=250.1
Q ss_pred CCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhH--------HHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcccch--
Q 004960 172 TSNRVRIAALKAIGSFLEFTNDGAEVVKFREFI--------PSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLL-- 241 (721)
Q Consensus 172 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l--------~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~-- 241 (721)
....||..|+.++...+...+...-...+..++ |.++-. .+++.++..|..|++.+..+.+....|+
T Consensus 8 ~~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l---~lkd~~~~~ra~alqv~~~~l~gsk~fls~ 84 (728)
T KOG4535|consen 8 YQAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTL---TLKDPSPKTRACALQVLSAILEGSKQFLSV 84 (728)
T ss_pred HHHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEE---ecCCCChhHHHHHHHHHHHHHHhhHHHHHH
Confidence 345799999999988776543211000011111 222221 3567788888888988888876543222
Q ss_pred ---------hhh-------HHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCC
Q 004960 242 ---------GDS-------VKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESN 305 (721)
Q Consensus 242 ---------~~~-------~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~ 305 (721)
.++ +..+..+++..+..+ ..+.+--++++++..++...|..--+..++..+...+-+++...|
T Consensus 85 a~~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e-~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d 163 (728)
T KOG4535|consen 85 AEDTSDHAFTPFSVMIACSIRELHRCLLLALVAE-SSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKD 163 (728)
T ss_pred HhccCCcCCCchHHHHHHHHHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCC
Confidence 221 112223333333333 245667788888888888766543333455666667777777765
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHHcCccccHhHHHHHHhhh----------cCCChhhHhHHHHHHHHHhhccHHH----
Q 004960 306 EAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSC----------QNASPKYREAAVTAIGIISEGCAEW---- 371 (721)
Q Consensus 306 ~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~i~~~l~~~l----------~~~~~~~r~~al~~l~~i~~~~~~~---- 371 (721)
..++..+...+..+..... ..|.+-..+..-. .-++|..+-.+--....+..+.++.
T Consensus 164 -------~~v~vs~l~~~~~~v~t~~--~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~ 234 (728)
T KOG4535|consen 164 -------VNVRVSSLTLLGAIVSTHA--PLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEP 234 (728)
T ss_pred -------CChhhHHHHHHHHHHhcCC--CCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCC
Confidence 5677776666666554322 2233322222211 1123333322222222222221100
Q ss_pred --H-HH---------hHHHHHHHHHhhcCC--CCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHH
Q 004960 372 --M-KE---------KLESVLHIVLGALRD--PEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKE 437 (721)
Q Consensus 372 --~-~~---------~l~~i~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~ 437 (721)
+ .+ .-.-.......++.. .-..+|..+++.+..++.+++- .+.|+-++...+...+.+..+.++.
T Consensus 235 ~~~i~~~~~i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~~-~~~~~~~l~RvI~~~~~~~~p~~~l 313 (728)
T KOG4535|consen 235 CWLIRLCISIVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFSM-TQAYLMELGRVICKCMGEADPSIQL 313 (728)
T ss_pred cceeeeeeeeeecCCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHccCCCCChHHHH
Confidence 0 00 000011122223321 1235888999999999998753 4568889999999999999999999
Q ss_pred HHHHHHHHHHHhhhhccccc--hHHHHHH-HHHh-h---------cCCChhHHHHHHHHHHHHHHHhhhcchhhHHHHHH
Q 004960 438 KSYYALAAFCEDMGEEILPF--LDPLMGK-LLAA-L---------ENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLE 504 (721)
Q Consensus 438 ~a~~al~~l~~~~~~~~~~~--~~~i~~~-l~~~-l---------~~~~~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~ 504 (721)
.+..++..+.........|- -...... +-.. + .+.....+...+.++.++....-..+..--....+
T Consensus 314 ~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~ 393 (728)
T KOG4535|consen 314 HGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCI 393 (728)
T ss_pred HHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhH
Confidence 99999998887765332221 1111111 1111 1 11124456677777777766554444443334444
Q ss_pred HHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHcccCccc-
Q 004960 505 LLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQ- 583 (721)
Q Consensus 505 ~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~- 583 (721)
.+...-. +.++.-.+..|+..++...-.-|-.....++......++..+.+..-..|..++..+|++...+-.....
T Consensus 394 ~Fl~GC~--d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~ 471 (728)
T KOG4535|consen 394 TFLLGCN--DSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTP 471 (728)
T ss_pred HHHhccc--chHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCc
Confidence 4333221 2233345666776666554322221222344555666666676666677888888888887666543322
Q ss_pred --chhhhHHH----HHhhccCCCCCccCCCCCccccccCCCCCCCCchhhhhccccceeeecchhhhHHHHHHHHHHHHH
Q 004960 584 --YLPLVVPL----AFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFAL 657 (721)
Q Consensus 584 --~l~~i~~~----ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~ 657 (721)
+-..+.-. ++..+...+ .+ -..+|..|++.+|....
T Consensus 472 ~s~~eR~sg~ll~~~~~~A~~~~--------Ad------------------------------~dkV~~navraLgnllQ 513 (728)
T KOG4535|consen 472 DSFQERFSGLLLLKMLRSAIEAS--------AD------------------------------KDKVKSNAVRALGNLLQ 513 (728)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhh--------hh------------------------------hhhhhhHHHHHHhhHHH
Confidence 22222222 222111100 00 01246778888888766
Q ss_pred HccccccchHHHHHHH-HHhccc----CCChhHHHHHHHHHHHHHHHH
Q 004960 658 HTKSSYAPFLEESLKI-LVRHAS----YFHEDVRYQAVFALKNILTAA 700 (721)
Q Consensus 658 ~~~~~~~~~~~~~~~~-l~~~~~----~~~~~vr~~a~~~l~~l~~~~ 700 (721)
.+..-..+-+..+++. ..++.. .-+-.||=.|+.++|+++++-
T Consensus 514 vlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~ 561 (728)
T KOG4535|consen 514 FLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNP 561 (728)
T ss_pred HHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCc
Confidence 6543333333333333 222222 235689999999999998863
No 127
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=98.11 E-value=0.001 Score=62.89 Aligned_cols=237 Identities=14% Similarity=0.159 Sum_probs=151.7
Q ss_pred HHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHH--HhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHH
Q 004960 383 VLGALRDPEQFVRGAASFALGQFAEYLQPEIV--SHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDP 460 (721)
Q Consensus 383 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~ 460 (721)
+-+.|.++++.+|..|..+|+.+.+.+++... ....-++.-+...+.|. ..-..++.++..++ .++.--......
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~--~~~~~~l~gl~~L~-~~~~~~~~~~~~ 80 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDH--ACVQPALKGLLALV-KMKNFSPESAVK 80 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccH--hhHHHHHHHHHHHH-hCcCCChhhHHH
Confidence 44678899999999999999999999886422 24456666667777544 33344477887777 333222233556
Q ss_pred HHHHHHHhhcC--CChhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchh
Q 004960 461 LMGKLLAALEN--SPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRA 538 (721)
Q Consensus 461 i~~~l~~~l~~--~~~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 538 (721)
++..+.+-..- .....|..++..+..+...........-+.++..+.+.+....|| +.--.+++.+..+.....
T Consensus 81 i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDP--RnLl~~F~l~~~i~~~~~-- 156 (262)
T PF14500_consen 81 ILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDP--RNLLLSFKLLKVILQEFD-- 156 (262)
T ss_pred HHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCH--HHHHHHHHHHHHHHHhcc--
Confidence 66666553332 246778899999998888776655555556666666666554444 332345566666655442
Q ss_pred hccCChHHHHHHHHhccC----C-C-Ch------hhHHHHHHHHHHHHHHcccCcccchhhhHHHHHhhccCCCCCccCC
Q 004960 539 RMEPILPPFVEAAISGFG----L-E-FS------ELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDI 606 (721)
Q Consensus 539 ~~~~~~~~i~~~l~~~l~----~-~-~~------~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~ 606 (721)
+.++++++++.+.-.+. . + ++ +++.....|+.. -..|.+..+|.+++.+.
T Consensus 157 -~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s--------~~~fa~~~~p~LleKL~--------- 218 (262)
T PF14500_consen 157 -ISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSS--------TPLFAPFAFPLLLEKLD--------- 218 (262)
T ss_pred -cchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcC--------cHhhHHHHHHHHHHHHc---------
Confidence 46777888887765432 1 1 22 333333333331 12345778888886542
Q ss_pred CCCccccccCCCCCCCCchhhhhccccceeeecchhhhHHHHHHHHHHHHHHccc-cccchHHHHHHHHHh
Q 004960 607 DGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKS-SYAPFLEESLKILVR 676 (721)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~~~-~~~~~~~~~~~~l~~ 676 (721)
++...+|..+++++...+...|. .+.||...++..+..
T Consensus 219 --------------------------------s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk~ 257 (262)
T PF14500_consen 219 --------------------------------STSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALKF 257 (262)
T ss_pred --------------------------------CCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 22234789999999999998874 588999999988764
No 128
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.07 E-value=1.7e-05 Score=61.72 Aligned_cols=85 Identities=25% Similarity=0.440 Sum_probs=66.4
Q ss_pred HHHHhhh-cCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhh
Q 004960 340 EFASVSC-QNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYE 418 (721)
Q Consensus 340 ~~l~~~l-~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 418 (721)
+.+.+.+ ++++|..|..++.+++.+.. +..++.+...++|+++.||..|+++|+.+.. +
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~----------~ 61 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELGD----------PEAIPALIELLKDEDPMVRRAAARALGRIGD----------P 61 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCTH----------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH----------H
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCC----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------H
Confidence 4556666 78899999999999994432 2668888888999999999999999998742 3
Q ss_pred hHHHHHHHhccCC-ChHHHHHHHHHHH
Q 004960 419 SVLPCILNALEDE-SDEVKEKSYYALA 444 (721)
Q Consensus 419 ~~l~~l~~~l~~~-~~~v~~~a~~al~ 444 (721)
..++.|.+.+.++ +..||..|..+|+
T Consensus 62 ~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 62 EAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 5677778877765 4557999988875
No 129
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.07 E-value=0.0064 Score=59.07 Aligned_cols=352 Identities=14% Similarity=0.117 Sum_probs=188.0
Q ss_pred CCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhcC------CCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 004960 34 PQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAK------LSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIA 107 (721)
Q Consensus 34 p~~~~~l~~il~~~~~~~vr~~a~~~l~~~i~~~w~~------~~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~ 107 (721)
+..+..+++++.....++.-++...++--.+.+.-.. .....+...-...+..|. ..++.+....+.+++.++
T Consensus 64 ~~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~-r~d~~iv~~~~~Ils~la 142 (442)
T KOG2759|consen 64 AQYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLN-RQDTFIVEMSFRILSKLA 142 (442)
T ss_pred HHHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHh-cCChHHHHHHHHHHHHHH
Confidence 3566777777766555666667776666665432111 111111112234566666 478888888899999887
Q ss_pred ccccC---CCCCcchHHHHHHhccC-CcHHHHHHHHHHHHHhhhhhhhc--c--cccHHHHHHHHHHhhCCCCCHHHHHH
Q 004960 108 KYAVP---AGEWPDLLPFLFQFSQS-EQEEHREVALILFSSLTETIGQT--F--RPHFADMQALLLKCLQDETSNRVRIA 179 (721)
Q Consensus 108 ~~~~~---~~~~~~ll~~l~~~l~~-~~~~~~~~al~~l~~i~~~~~~~--~--~~~~~~l~~~l~~~l~~~~~~~vr~~ 179 (721)
....- .....-....+...+++ .++..+..+..|+..++....-. + ..-+..+++.+. +...+.+++..
T Consensus 143 ~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~---s~~~~~QlQYq 219 (442)
T KOG2759|consen 143 CFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILA---STKCGFQLQYQ 219 (442)
T ss_pred HhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHh---ccCcchhHHHH
Confidence 64321 11333456677777766 56677788888998887443211 1 111233334333 33357788888
Q ss_pred HHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcccc--hhhhHHHH----HHHHH
Q 004960 180 ALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPL--LGDSVKSI----VHFSL 253 (721)
Q Consensus 180 a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~--~~~~~~~l----~~~~~ 253 (721)
.+.|+-.+.-...-.... ...++++.+..++.... .+++..-++.++.++.+..+.. .+.+.... +...+
T Consensus 220 sifciWlLtFn~~~ae~~-~~~~li~~L~~Ivk~~~---KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l 295 (442)
T KOG2759|consen 220 SIFCIWLLTFNPHAAEKL-KRFDLIQDLSDIVKEST---KEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTL 295 (442)
T ss_pred HHHHHHHhhcCHHHHHHH-hhccHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHH
Confidence 888776554221111112 22456777777655543 4567777888888888876411 11111111 12223
Q ss_pred HhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcCcc
Q 004960 254 EVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKH 333 (721)
Q Consensus 254 ~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~ 333 (721)
+.++....+++--...+++|..-.+.....+.. .......+....- +|+|......+...=+..+.+.
T Consensus 296 ~~L~~rkysDEDL~~di~~L~e~L~~svq~LsS---FDeY~sEl~sG~L---------~WSP~Hk~e~FW~eNa~rlnen 363 (442)
T KOG2759|consen 296 QSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSS---FDEYKSELRSGRL---------EWSPVHKSEKFWRENADRLNEN 363 (442)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhcc---HHHHHHHHHhCCc---------CCCccccccchHHHhHHHHhhc
Confidence 333333233333344555555443322221111 1111111211111 2444444444444434333321
Q ss_pred ccHhHHHHHHhhhcC-CChhhHhHHHHHHHHHhhccHHHH--HHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHh
Q 004960 334 VFPPVFEFASVSCQN-ASPKYREAAVTAIGIISEGCAEWM--KEKLESVLHIVLGALRDPEQFVRGAASFALGQFAE 407 (721)
Q Consensus 334 ~~~~i~~~l~~~l~~-~~~~~r~~al~~l~~i~~~~~~~~--~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 407 (721)
- -.++..+...++. .++..-..|+.=+|..+...|+.- .... +.=..+++.+++++|.||..|+.++..+..
T Consensus 364 n-yellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~-ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 364 N-YELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKY-GGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred c-HHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHh-chHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 1 1355555556654 457777888888999988766421 1111 223577889999999999999999887654
No 130
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=98.04 E-value=0.00034 Score=61.22 Aligned_cols=135 Identities=21% Similarity=0.267 Sum_probs=113.0
Q ss_pred HhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhH-HHHHhhhhHHHHHHHhccCCC-hHHHHHHHHHHHHHHHhhh
Q 004960 374 EKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQP-EIVSHYESVLPCILNALEDES-DEVKEKSYYALAAFCEDMG 451 (721)
Q Consensus 374 ~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~~~l~~l~~~l~~~~-~~v~~~a~~al~~l~~~~~ 451 (721)
..++.++..+...+++.++.-|..++..++..++..+. .+..+....+..+++.++.++ ..+...++.++..+.....
T Consensus 21 ~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 21 SALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 45667888899999999999999999999999999844 444788899999999998765 4588999999999998762
Q ss_pred -------hccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHH
Q 004960 452 -------EEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFM 510 (721)
Q Consensus 452 -------~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~~l~~~l 510 (721)
+...|.++.+++.+.+.+++ ....+.++.++..+....+..|.||...+-..+...+
T Consensus 101 ~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 101 GKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLSLL 164 (165)
T ss_pred CCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence 44568999999999998886 5677899999999999999999999998877766544
No 131
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=98.02 E-value=0.0044 Score=60.45 Aligned_cols=205 Identities=19% Similarity=0.168 Sum_probs=138.8
Q ss_pred hhcCCChhhHhHHHHHHHHHhhc--cHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhh--HHHHHhhhhH
Q 004960 345 SCQNASPKYREAAVTAIGIISEG--CAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQ--PEIVSHYESV 420 (721)
Q Consensus 345 ~l~~~~~~~r~~al~~l~~i~~~--~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~~~~ 420 (721)
.+.+.....|++++..+..+... .++.+......+++.+.+.++-....=+..|+.+++-++-.++ ......+..+
T Consensus 51 ~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~ 130 (309)
T PF05004_consen 51 LLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEEL 130 (309)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHH
Confidence 34555688999999988887644 5677788888999999999987666667778899999888765 5556778888
Q ss_pred HHHHHHhccCCC--hHHHHHHHHHHHHHHHhhhhccccch--HHHHHHHHHh--hcC----------CChhHHHHHHHHH
Q 004960 421 LPCILNALEDES--DEVKEKSYYALAAFCEDMGEEILPFL--DPLMGKLLAA--LEN----------SPRNLQETCMSAI 484 (721)
Q Consensus 421 l~~l~~~l~~~~--~~v~~~a~~al~~l~~~~~~~~~~~~--~~i~~~l~~~--l~~----------~~~~v~~~~l~~l 484 (721)
.|.|.+.+.+.. ..+|..++.+|+-++-..+....... -..++.+... .+. +++.+...++.++
T Consensus 131 ~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW 210 (309)
T PF05004_consen 131 KPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAW 210 (309)
T ss_pred HHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHH
Confidence 999888888764 45777888888876554433222111 1333322211 111 1356899999999
Q ss_pred HHHHHHhhh-cchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhch---hhccCChHHHHHHHH
Q 004960 485 GSVAAAAEQ-AFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGR---ARMEPILPPFVEAAI 552 (721)
Q Consensus 485 ~~l~~~~~~-~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~---~~~~~~~~~i~~~l~ 552 (721)
+.++...+. .+..+....+|.|...|.. ++..+|..|-+++..+-..... +...+..+.+++.+-
T Consensus 211 ~lLlt~~~~~~~~~~~~~~~~~l~~lL~s---~d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l~~~l~ 279 (309)
T PF05004_consen 211 ALLLTTLPDSKLEDLLEEALPALSELLDS---DDVDVRIAAGEAIALLYELARDHEEDFLYEDMEELLEQLR 279 (309)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHH
Confidence 999988775 4566778888888888854 3566777777777777544331 222334445554443
No 132
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=98.02 E-value=0.0014 Score=63.94 Aligned_cols=197 Identities=18% Similarity=0.176 Sum_probs=140.1
Q ss_pred HHHhhcCCCCHhHHHHHHHHHHHHHhh--hhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhh--hccccc
Q 004960 382 IVLGALRDPEQFVRGAASFALGQFAEY--LQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMG--EEILPF 457 (721)
Q Consensus 382 ~l~~~l~d~~~~vr~~a~~~l~~l~~~--~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~--~~~~~~ 457 (721)
..+..+.+.....|..++..+..+... .+..+......++..+.+.++....+-+..|+.++.-++-.++ ......
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei 126 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEI 126 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHH
Confidence 344555677889999999998887643 3334445677889999999988776666777888887776654 555677
Q ss_pred hHHHHHHHHHhhcCCC--hhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHH-----HhccC-------chhhhhHHH
Q 004960 458 LDPLMGKLLAALENSP--RNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIF-----MVLTN-------DEDLRSRAR 523 (721)
Q Consensus 458 ~~~i~~~l~~~l~~~~--~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~~l~~~-----l~~~~-------~~~~~~~~~ 523 (721)
++.+.+.|.+.+.+.. ..+|..++.|++.+....+.+...+.. ++..+..+ .+... .++..+...
T Consensus 127 ~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~-~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~a 205 (309)
T PF05004_consen 127 FEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEE-LMESLESIFLLSILKSDGNAPVVAAEDDAALVAA 205 (309)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHH-HHHHHHHHHHHHhcCcCCCcccccCCCccHHHHH
Confidence 8888888888888764 567788899999888776655433321 22322211 11111 123457788
Q ss_pred HHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHccc
Q 004960 524 ATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLED 579 (721)
Q Consensus 524 ~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~ 579 (721)
|+.+++.+...+....+...+...++.+...|..++.+||.+|-.++.-+.+....
T Consensus 206 AL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~ 261 (309)
T PF05004_consen 206 ALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARD 261 (309)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhc
Confidence 99999999987766556666778888888889999999999999998888766654
No 133
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=98.01 E-value=0.0031 Score=61.13 Aligned_cols=155 Identities=14% Similarity=0.041 Sum_probs=100.2
Q ss_pred HhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccH---HHHHH-hHHHHHHHHHh-hcCCCCHhHHHHHHHHHHHHHhhhh
Q 004960 336 PPVFEFASVSCQNASPKYREAAVTAIGIISEGCA---EWMKE-KLESVLHIVLG-ALRDPEQFVRGAASFALGQFAEYLQ 410 (721)
Q Consensus 336 ~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~---~~~~~-~l~~i~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~ 410 (721)
|.+++++..++.|.+....-.+..++|+++..-. ..+.. .+..++..+.+ ---|.+..++.+++.+|.++.--.+
T Consensus 314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~ 393 (604)
T KOG4500|consen 314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS 393 (604)
T ss_pred cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC
Confidence 5689999999999999999999999999997643 22222 24444444444 2236788999999999999876554
Q ss_pred HHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccc--hHHHHHHHHHhhcCCChh-HHHHHHHHHHHH
Q 004960 411 PEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPF--LDPLMGKLLAALENSPRN-LQETCMSAIGSV 487 (721)
Q Consensus 411 ~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~--~~~i~~~l~~~l~~~~~~-v~~~~l~~l~~l 487 (721)
..-.-.-.++.+.++..++...++|...-...++.+.+..+...... -+.++..|..--.+++.. +--+....+.-+
T Consensus 394 nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~l 473 (604)
T KOG4500|consen 394 NKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGL 473 (604)
T ss_pred chhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHH
Confidence 43221225788889988888888898888888888876654211111 124555555544444422 333444444444
Q ss_pred HHH
Q 004960 488 AAA 490 (721)
Q Consensus 488 ~~~ 490 (721)
+..
T Consensus 474 IkH 476 (604)
T KOG4500|consen 474 IKH 476 (604)
T ss_pred HHh
Confidence 433
No 134
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.99 E-value=0.00027 Score=65.35 Aligned_cols=149 Identities=17% Similarity=0.204 Sum_probs=124.3
Q ss_pred HHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhh
Q 004960 338 VFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY 417 (721)
Q Consensus 338 i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 417 (721)
.+......+.+.+|..+..++..+..++...++.+.+.+..++..+.+.++++..-|-.+|+.+++.+...+...+...+
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~l 168 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQEL 168 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556889999999999999999999999999999999999999999999999999999999999999988777777
Q ss_pred hhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhh
Q 004960 418 ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAE 492 (721)
Q Consensus 418 ~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~ 492 (721)
+.++..|+..-...+..||+.|-.+|..++....+. .+++.|...+.+.++.++..+..|+...+...|
T Consensus 169 d~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~------~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~ 237 (334)
T KOG2933|consen 169 DDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ------KLLRKLIPILQHSNPRVRAKAALCFSRCVIRLG 237 (334)
T ss_pred HHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH------HHHHHHHHHHhhhchhhhhhhhccccccceecc
Confidence 777777776656666789999999999998776542 466777777888888888888878777666655
No 135
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=97.98 E-value=0.0016 Score=61.57 Aligned_cols=239 Identities=9% Similarity=0.080 Sum_probs=157.6
Q ss_pred HHHhhhcCCChhhHhHHHHHHHHHhhccHHH-H-HHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhh
Q 004960 341 FASVSCQNASPKYREAAVTAIGIISEGCAEW-M-KEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYE 418 (721)
Q Consensus 341 ~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~-~-~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 418 (721)
.+...+.++++..|..|+..++.+....+.. + ...+.-++..+...+.| +..+..+ +.++..+...-. --.....
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D-~~~~~~~-l~gl~~L~~~~~-~~~~~~~ 79 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDD-HACVQPA-LKGLLALVKMKN-FSPESAV 79 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhcc-HhhHHHH-HHHHHHHHhCcC-CChhhHH
Confidence 3456788999999999999999999988743 3 33467777888888854 4445443 777777663311 0012344
Q ss_pred hHHHHHHHhccC--CChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHHHhhhcc
Q 004960 419 SVLPCILNALED--ESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALEN-SPRNLQETCMSAIGSVAAAAEQAF 495 (721)
Q Consensus 419 ~~l~~l~~~l~~--~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~-~~~~v~~~~l~~l~~l~~~~~~~~ 495 (721)
.++..+.+..+- -....|..+...+..+++.....+...-+.++..+.+.... .+|..-..++..+..+..... +
T Consensus 80 ~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~--~ 157 (262)
T PF14500_consen 80 KILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD--I 157 (262)
T ss_pred HHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc--c
Confidence 555565554332 23568999999999999988777766667777777777654 367655666666666655544 3
Q ss_pred hhhHHHHHHHHHHHHhc-----cCchhh----hhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCChhhHHHH
Q 004960 496 IPYAERVLELLKIFMVL-----TNDEDL----RSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYT 566 (721)
Q Consensus 496 ~~~~~~i~~~l~~~l~~-----~~~~~~----~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ 566 (721)
.++.+++...+.....- .+++.. +++.....|++. ... +.+..++.+++-+.++.+.++..+
T Consensus 158 ~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s------~~~---fa~~~~p~LleKL~s~~~~~K~D~ 228 (262)
T PF14500_consen 158 SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSS------TPL---FAPFAFPLLLEKLDSTSPSVKLDS 228 (262)
T ss_pred chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcC------cHh---hHHHHHHHHHHHHcCCCcHHHHHH
Confidence 56677777766555432 123211 233233333221 112 356778888888888888899999
Q ss_pred HHHHHHHHHHccc-CcccchhhhHHHHH
Q 004960 567 HGFFSNIAGVLED-GFAQYLPLVVPLAF 593 (721)
Q Consensus 567 ~~~l~~l~~~~~~-~~~~~l~~i~~~ll 593 (721)
+.++...+..+|. .+.+|...+...|-
T Consensus 229 L~tL~~c~~~y~~~~~~~~~~~iw~~lk 256 (262)
T PF14500_consen 229 LQTLKACIENYGADSLSPHWSTIWNALK 256 (262)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 9999999999987 47777777776653
No 136
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.97 E-value=0.00031 Score=62.74 Aligned_cols=107 Identities=10% Similarity=0.138 Sum_probs=80.4
Q ss_pred cHHHHHHHHHHHHHHHcCccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHh
Q 004960 314 APDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQF 393 (721)
Q Consensus 314 ~~~~~a~~~l~~l~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~ 393 (721)
.+|..+..+++.++..++. .+++.++.+...+.++++..|..|+.++..+...-. ...-+.++..+..++.|+++.
T Consensus 3 ~vR~n~i~~l~DL~~r~~~-~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~---ik~k~~l~~~~l~~l~D~~~~ 78 (178)
T PF12717_consen 3 SVRNNAIIALGDLCIRYPN-LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM---IKVKGQLFSRILKLLVDENPE 78 (178)
T ss_pred HHHHHHHHHHHHHHHhCcH-HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc---eeehhhhhHHHHHHHcCCCHH
Confidence 4677777888888887764 667788888899999999999999999999886522 222235556777888999999
Q ss_pred HHHHHHHHHHHHHhh-hhHHHHHhhhhHHHHH
Q 004960 394 VRGAASFALGQFAEY-LQPEIVSHYESVLPCI 424 (721)
Q Consensus 394 vr~~a~~~l~~l~~~-~~~~~~~~~~~~l~~l 424 (721)
||..|..++..+... .+..+...+.+++..+
T Consensus 79 Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l 110 (178)
T PF12717_consen 79 IRSLARSFFSELLKKRNPNIIYNNFPELISSL 110 (178)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 999999999999887 4333434444444433
No 137
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=97.96 E-value=0.0007 Score=69.08 Aligned_cols=225 Identities=12% Similarity=0.150 Sum_probs=140.7
Q ss_pred ChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCC-CCHhHHHHHHHHHHHHHhhhhH----HHHHhhhhHHHHH
Q 004960 350 SPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRD-PEQFVRGAASFALGQFAEYLQP----EIVSHYESVLPCI 424 (721)
Q Consensus 350 ~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~----~~~~~~~~~l~~l 424 (721)
|.....+-+..+..+-+.........++.+...+....++ .||.--...+.+++.+.+.... .+..+-+.++|.+
T Consensus 43 NeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f 122 (435)
T PF03378_consen 43 NEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPF 122 (435)
T ss_dssp -HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Confidence 3334444444444444444333334444555555444454 4888889999999998776432 1224456788888
Q ss_pred HHhccCCChHHHHHHHHHHHHHHHhhh-hccccchHHHHHHHHHh-hcCCChhHHHHHHHHHHHHHHHhhhcch--hhHH
Q 004960 425 LNALEDESDEVKEKSYYALAAFCEDMG-EEILPFLDPLMGKLLAA-LENSPRNLQETCMSAIGSVAAAAEQAFI--PYAE 500 (721)
Q Consensus 425 ~~~l~~~~~~v~~~a~~al~~l~~~~~-~~~~~~~~~i~~~l~~~-l~~~~~~v~~~~l~~l~~l~~~~~~~~~--~~~~ 500 (721)
...|+..-.+....+...++.+++..+ ..+.+.+..+++.|..- +-+...++ -.+...+..++...+..+. .+++
T Consensus 123 ~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gni-PalvrLL~a~i~k~~~~i~~~~~l~ 201 (435)
T PF03378_consen 123 QEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNI-PALVRLLQAYIKKDPSFIVANNQLE 201 (435)
T ss_dssp HHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTH-HHHHHHHHHHHHHHGGG----S-CH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCc-CcHHHHHHHHHHhCchhhcchhhHH
Confidence 888887766777788888998888876 45555556666655432 22222333 4555667777777776664 5788
Q ss_pred HHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCC-CChhhHHHHHHHHHHHHHHccc
Q 004960 501 RVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGL-EFSELREYTHGFFSNIAGVLED 579 (721)
Q Consensus 501 ~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~-~~~~~~~~~~~~l~~l~~~~~~ 579 (721)
.++..+.+++.....+ ..+++.+..+...+..+.+.+|++.++..++.-++. +.+...+....+++.++...|.
T Consensus 202 ~iLgvFQkLi~sk~~D-----~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~ 276 (435)
T PF03378_consen 202 PILGVFQKLIASKAND-----HYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGP 276 (435)
T ss_dssp HHHHHHHHHHT-TTCH-----HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHCCCCcc-----hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCH
Confidence 8999998888765433 247888999998998888999999999999998873 4666777777777777766665
Q ss_pred C
Q 004960 580 G 580 (721)
Q Consensus 580 ~ 580 (721)
+
T Consensus 277 ~ 277 (435)
T PF03378_consen 277 D 277 (435)
T ss_dssp H
T ss_pred H
Confidence 3
No 138
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=97.96 E-value=0.00021 Score=77.29 Aligned_cols=206 Identities=15% Similarity=0.129 Sum_probs=158.6
Q ss_pred HHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHH-HhccCCChHHHHHHHHHHHHHHHhhhhcc
Q 004960 376 LESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCIL-NALEDESDEVKEKSYYALAAFCEDMGEEI 454 (721)
Q Consensus 376 l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~-~~l~~~~~~v~~~a~~al~~l~~~~~~~~ 454 (721)
++.+-+.+...+.++++.-|..|+..+....+.-+.....-+.+++-.++ ..+.|.+..|...++..|..++..++...
T Consensus 251 ~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~ 330 (815)
T KOG1820|consen 251 LSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLF 330 (815)
T ss_pred hhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhh
Confidence 45566677778889999999999999888877654222333334444444 44667888899999999999999999989
Q ss_pred ccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHh
Q 004960 455 LPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAES 534 (721)
Q Consensus 455 ~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~ 534 (721)
.+|...+.+.++..+.+....+++.+..++..+.... .+..+.+.+...+.. .....++.+..+++.....
T Consensus 331 ~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~------~l~~~~~~I~e~lk~---knp~~k~~~~~~l~r~~~~ 401 (815)
T KOG1820|consen 331 RKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNST------PLSKMSEAILEALKG---KNPQIKGECLLLLDRKLRK 401 (815)
T ss_pred HHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcc------cHHHHHHHHHHHhcC---CChhhHHHHHHHHHHHHhh
Confidence 9999999999999999999999999988888777632 234455555555533 3456777888888888777
Q ss_pred hch-hhccCChHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHcccC-cccchhhhHH
Q 004960 535 VGR-ARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDG-FAQYLPLVVP 590 (721)
Q Consensus 535 ~~~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~l~~i~~ 590 (721)
.++ ..+.+-+..+++.++...+|.+.+||.++..+++.+.++.|+. +..|+..+-+
T Consensus 402 ~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~~~ 459 (815)
T KOG1820|consen 402 LGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLKDLDK 459 (815)
T ss_pred cCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcc
Confidence 763 3455667889999999999999999999999999999999984 5666666654
No 139
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.94 E-value=0.014 Score=69.54 Aligned_cols=348 Identities=14% Similarity=0.184 Sum_probs=198.8
Q ss_pred CCCHHHHHHHHHHHHHHHhhc--CCHHHHHHHHHHHHHHHccccC--CCCCcch----HHHHHHhccCCcHHHHHHHHHH
Q 004960 70 KLSPQLKQLVKQSLIESITLE--HSAPVRRASANVVSIIAKYAVP--AGEWPDL----LPFLFQFSQSEQEEHREVALIL 141 (721)
Q Consensus 70 ~~~~~~~~~i~~~ll~~l~~e--~~~~vr~~~~~~l~~i~~~~~~--~~~~~~l----l~~l~~~l~~~~~~~~~~al~~ 141 (721)
.++.+....+.+.|...=..| ....-|.-.-+-+..++.+... .-.|+.+ -+++.....+.+...+..|+..
T Consensus 1081 ~L~~eai~~fv~AL~~vS~eEl~~~~~pr~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAids 1160 (1780)
T PLN03076 1081 KLNSEAIIDFVKALCKVSMEELRSPSDPRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDS 1160 (1780)
T ss_pred cCCHHHHHHHHHHHHHhhHHHHccCCCCchhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHH
Confidence 466665555555555432212 1111233444444555432221 1246654 4444443334456677788888
Q ss_pred HHHhhhhhh--hccc--ccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhc
Q 004960 142 FSSLTETIG--QTFR--PHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLAS 217 (721)
Q Consensus 142 l~~i~~~~~--~~~~--~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~ 217 (721)
|.+++..+- +++. .+-.+++..+...+....+.++|...+.|+..++....+ .++.-+..++.++.....+
T Consensus 1161 LrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~-----nIkSGWktIF~VLs~aa~d 1235 (1780)
T PLN03076 1161 LRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVN-----NVKSGWKSMFMVFTTAAYD 1235 (1780)
T ss_pred HHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh-----hhhcCcHHHHHHHHHHHhC
Confidence 878775432 1111 122577788777776657889999999999998876533 2455666777777666777
Q ss_pred CCHHHHHHHHHHHHHHhcCcccch----hhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhh-h----h---
Q 004960 218 GEEDVAVIAFEIFDELIESPAPLL----GDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNS-L----K--- 285 (721)
Q Consensus 218 ~~~~~~~~a~~~l~~l~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~-~----~--- 285 (721)
+++.+...|++.+..++...-..+ ...+..++.++...+.+. .+.++-..|++++..++...... . .
T Consensus 1236 ~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~-~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~ 1314 (1780)
T PLN03076 1236 DHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSR-FNKDISLNAIAFLRFCATKLAEGDLGSSSRNKD 1314 (1780)
T ss_pred ccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCc-CcccccHHHHHHHHHHHHHHHhccccccccccc
Confidence 888999999999998876543322 245566777766665443 24556677777776554321100 0 0
Q ss_pred ----------------------hc----CChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcCc----ccc
Q 004960 286 ----------------------KH----KLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAK----HVF 335 (721)
Q Consensus 286 ----------------------~~----~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~----~~~ 335 (721)
.. .+.-+++..+..... +++.++|..|...|-.+....|. ..+
T Consensus 1315 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~-------D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W 1387 (1780)
T PLN03076 1315 KEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSF-------DPRPEIRKSALQVLFDTLRNHGHLFSLPLW 1387 (1780)
T ss_pred cccccccccccccccccccccccchhHHHHHHHHHHHHHHHhc-------CCcHHHHHHHHHHHHHHHHHhhccCCHHHH
Confidence 00 001111111111111 23467888888777655555552 222
Q ss_pred Hh-----HHHH---HHhhhc--------------C------CChhhHhHHHHHHHHHhhccH---HHHHHhHHHHHHHHH
Q 004960 336 PP-----VFEF---ASVSCQ--------------N------ASPKYREAAVTAIGIISEGCA---EWMKEKLESVLHIVL 384 (721)
Q Consensus 336 ~~-----i~~~---l~~~l~--------------~------~~~~~r~~al~~l~~i~~~~~---~~~~~~l~~i~~~l~ 384 (721)
.. ++|. +..... + ..|. .++...++..+++-.. +.+...+++++..+.
T Consensus 1388 ~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl-~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~ 1466 (1780)
T PLN03076 1388 ERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWL-YETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLV 1466 (1780)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 2222 221100 0 1132 4555666666665444 344456788888888
Q ss_pred hhcCCCCHhHHHHHHHHHHHHHhhhhHHHHH-hhhhHHHHHHHhccCC
Q 004960 385 GALRDPEQFVRGAASFALGQFAEYLQPEIVS-HYESVLPCILNALEDE 431 (721)
Q Consensus 385 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~-~~~~~l~~l~~~l~~~ 431 (721)
.++..+|..+-..+..|+.++....+..+.+ .+..++..+.+.+...
T Consensus 1467 ~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~~~~~lf~~T 1514 (1780)
T PLN03076 1467 SFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLSLKEAANAT 1514 (1780)
T ss_pred HHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHh
Confidence 8889999999999999999998877766553 5677777766665543
No 140
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.93 E-value=0.0038 Score=62.87 Aligned_cols=252 Identities=22% Similarity=0.261 Sum_probs=140.0
Q ss_pred cchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhh
Q 004960 117 PDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAE 196 (721)
Q Consensus 117 ~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~ 196 (721)
+...+.+.+.+.+.++..|..+...++.+- ....++.+...+.+ .++.+|..+..+++.+-.
T Consensus 42 ~~~~~~~~~~l~~~~~~vr~~aa~~l~~~~----------~~~av~~l~~~l~d-~~~~vr~~a~~aLg~~~~------- 103 (335)
T COG1413 42 PEAADELLKLLEDEDLLVRLSAAVALGELG----------SEEAVPLLRELLSD-EDPRVRDAAADALGELGD------- 103 (335)
T ss_pred hhhHHHHHHHHcCCCHHHHHHHHHHHhhhc----------hHHHHHHHHHHhcC-CCHHHHHHHHHHHHccCC-------
Confidence 356788888888888888888887765552 36778888999999 899999999987764432
Q ss_pred HHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHhhcCCCC----------ChHHH
Q 004960 197 VVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNL----------EPNTR 266 (721)
Q Consensus 197 ~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~----------~~~~r 266 (721)
...++.++..+.. +.+..++..+...|+.+..... +..++ ..+.+... ...+|
T Consensus 104 ----~~a~~~li~~l~~---d~~~~vR~~aa~aL~~~~~~~a------~~~l~----~~l~~~~~~~a~~~~~~~~~~~r 166 (335)
T COG1413 104 ----PEAVPPLVELLEN---DENEGVRAAAARALGKLGDERA------LDPLL----EALQDEDSGSAAAALDAALLDVR 166 (335)
T ss_pred ----hhHHHHHHHHHHc---CCcHhHHHHHHHHHHhcCchhh------hHHHH----HHhccchhhhhhhhccchHHHHH
Confidence 2244555553322 5788899999999988766321 12222 22222210 01234
Q ss_pred HHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcCccccHhHHHHHHhhh
Q 004960 267 HQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSC 346 (721)
Q Consensus 267 ~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~i~~~l~~~l 346 (721)
..++..+..+.. +...+.+.+.+.... ..+|..+...+..+.... ..+...+...+
T Consensus 167 ~~a~~~l~~~~~------------~~~~~~l~~~l~~~~-------~~vr~~Aa~aL~~~~~~~-----~~~~~~l~~~~ 222 (335)
T COG1413 167 AAAAEALGELGD------------PEAIPLLIELLEDED-------ADVRRAAASALGQLGSEN-----VEAADLLVKAL 222 (335)
T ss_pred HHHHHHHHHcCC------------hhhhHHHHHHHhCch-------HHHHHHHHHHHHHhhcch-----hhHHHHHHHHh
Confidence 443333322221 111222233333222 245555555555544322 23445555566
Q ss_pred cCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHH
Q 004960 347 QNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILN 426 (721)
Q Consensus 347 ~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ 426 (721)
.+++|..|..++..++.+... .....+...+.+.++.++..+...++. .........+..
T Consensus 223 ~~~~~~vr~~~~~~l~~~~~~----------~~~~~l~~~l~~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~ 282 (335)
T COG1413 223 SDESLEVRKAALLALGEIGDE----------EAVDALAKALEDEDVILALLAAAALGA----------LDLAEAALPLLL 282 (335)
T ss_pred cCCCHHHHHHHHHHhcccCcc----------hhHHHHHHHHhccchHHHHHHHHHhcc----------cCchhhHHHHHH
Confidence 667777777777766666532 334445555566666666555544441 011122333444
Q ss_pred hccCCChHHHHHHHHHHHHHH
Q 004960 427 ALEDESDEVKEKSYYALAAFC 447 (721)
Q Consensus 427 ~l~~~~~~v~~~a~~al~~l~ 447 (721)
.+.+....++..+..++..+.
T Consensus 283 ~~~~~~~~~~~~~~~~l~~~~ 303 (335)
T COG1413 283 LLIDEANAVRLEAALALGQIG 303 (335)
T ss_pred HhhcchhhHHHHHHHHHHhhc
Confidence 455555666666666666554
No 141
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=97.92 E-value=0.0048 Score=63.06 Aligned_cols=305 Identities=15% Similarity=0.228 Sum_probs=157.4
Q ss_pred CcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccccHHHHHH----HHHHhhCCCCCHHHHHHHHHHHHHhhhhc
Q 004960 116 WPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQA----LLLKCLQDETSNRVRIAALKAIGSFLEFT 191 (721)
Q Consensus 116 ~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~l~~----~l~~~l~~~~~~~vr~~a~~~l~~l~~~~ 191 (721)
-..++..|+..+..++....+-.++|+-+++....+...++...+++ ++....+++.|+..-...+.+++.++++.
T Consensus 24 ~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~ 103 (435)
T PF03378_consen 24 AQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFV 103 (435)
T ss_dssp HHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhc
Confidence 46677778777765433334456666666665555555555555544 44444556578888889999999998886
Q ss_pred CChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcc-cchhhhHHHHHHHHHHhhcCCCCChHHHHHHH
Q 004960 192 NDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPA-PLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAI 270 (721)
Q Consensus 192 ~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~ 270 (721)
.+.. ......+-+.++..+...++.+-.+-.--+++.+..+.+..+ .-+.+....+++.++....-+ ...---...
T Consensus 104 ~~~~-~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe--~~gniPalv 180 (435)
T PF03378_consen 104 CEAD-PEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWE--RRGNIPALV 180 (435)
T ss_dssp -GGG-HH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGG--STTTHHHHH
T ss_pred cCCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhc--cCCCcCcHH
Confidence 4322 221222333333333345555555666677888888877665 223333333344333211000 011112334
Q ss_pred HHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcCc----cccHhHHHHHHhhh
Q 004960 271 QIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAK----HVFPPVFEFASVSC 346 (721)
Q Consensus 271 ~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~----~~~~~i~~~l~~~l 346 (721)
.++.++.+..+..+...+.+..++...-.++.... ....+...+..+...++. ++++.++..+.+.+
T Consensus 181 rLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~---------~D~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RL 251 (435)
T PF03378_consen 181 RLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKA---------NDHYGFDLLESIVENLPPEALEPYLKQIFTLLLTRL 251 (435)
T ss_dssp HHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TT---------CHHHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCC---------cchHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Confidence 56777777777766544567788877766666543 223466788888888873 45667777666666
Q ss_pred c-CCChhhHhHHHHHHHHHhhc-cHHHHHHhHH--------HHHH-HHHhhcC-CCCHhHHHHHHHHHHHHHhhhhH---
Q 004960 347 Q-NASPKYREAAVTAIGIISEG-CAEWMKEKLE--------SVLH-IVLGALR-DPEQFVRGAASFALGQFAEYLQP--- 411 (721)
Q Consensus 347 ~-~~~~~~r~~al~~l~~i~~~-~~~~~~~~l~--------~i~~-~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~--- 411 (721)
+ +...+.+..-+..++.++.. .++.+...++ .++. .+++.++ -..+.-|+.++-.+.++....+.
T Consensus 252 q~skT~kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~es~~~~~ 331 (435)
T PF03378_consen 252 QSSKTEKFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCESPAFLS 331 (435)
T ss_dssp HHC--HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHSSTTHHH
T ss_pred hhCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhccHhhhh
Confidence 5 45555555555555544432 2222222222 2222 1222222 23566788888888876543332
Q ss_pred HHHHhhhhHHHHHHHhccCCC
Q 004960 412 EIVSHYESVLPCILNALEDES 432 (721)
Q Consensus 412 ~~~~~~~~~l~~l~~~l~~~~ 432 (721)
.....+..+++.+++.+..+.
T Consensus 332 ~~~~~w~~ll~~Ll~ll~~p~ 352 (435)
T PF03378_consen 332 EYSQLWPPLLEALLKLLERPP 352 (435)
T ss_dssp H-CHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHcCCc
Confidence 222456677777777776553
No 142
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.91 E-value=0.0025 Score=65.80 Aligned_cols=275 Identities=15% Similarity=0.160 Sum_probs=139.2
Q ss_pred CCHHHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHH
Q 004960 218 GEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVM 297 (721)
Q Consensus 218 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l 297 (721)
++......|.+.+..+....|.+-... ++.++++++++ +..+|..|+.-|..+|+..+ ++++.+.++|
T Consensus 34 g~~k~K~Laaq~I~kffk~FP~l~~~A----i~a~~DLcEDe--d~~iR~~aik~lp~~ck~~~------~~v~kvaDvL 101 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFPDLQEEA----INAQLDLCEDE--DVQIRKQAIKGLPQLCKDNP------EHVSKVADVL 101 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-GGGHHHH----HHHHHHHHT-S--SHHHHHHHHHHGGGG--T--------T-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHHH----HHHHHHHHhcc--cHHHHHHHHHhHHHHHHhHH------HHHhHHHHHH
Confidence 578888999999999998776655554 45555566555 78899999999988887644 3577888888
Q ss_pred HhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcCccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHH-HHH--H
Q 004960 298 CPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAE-WMK--E 374 (721)
Q Consensus 298 ~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~-~~~--~ 374 (721)
.++|...+ .........+|..+-..-+...+..++..+... .+.+...|+-++.++..-...++. .+. .
T Consensus 102 ~QlL~tdd-------~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~-~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~ 173 (556)
T PF05918_consen 102 VQLLQTDD-------PVELDAVKNSLMSLLKQDPKGTLTGLFSQIESS-KSGDEQVRERALKFLREKLKPLKPELLTPQK 173 (556)
T ss_dssp HHHTT----------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH----HS-HHHHHHHHHHHHHHGGGS-TTTS---H
T ss_pred HHHHhccc-------HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-ccCchHHHHHHHHHHHHHHhhCcHHHhhchH
Confidence 88887533 344555566666666655554555555555432 234567888888887665544331 111 1
Q ss_pred hH-HHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhc--cC----CChHHHHHHHHHHHHHH
Q 004960 375 KL-ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNAL--ED----ESDEVKEKSYYALAAFC 447 (721)
Q Consensus 375 ~l-~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l--~~----~~~~v~~~a~~al~~l~ 447 (721)
.. .-++..+.+.|.|-...=-...+..|..+-.+....-......+++.+.+.. .. .++..-.....++..-+
T Consensus 174 E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Al 253 (556)
T PF05918_consen 174 EMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQAL 253 (556)
T ss_dssp HHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhh
Confidence 12 2344566677766322111222333333322110000122334555544322 21 12333333333333322
Q ss_pred Hhh--hhccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhh-hcchhhHHHHHHHHHHHHhc
Q 004960 448 EDM--GEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAE-QAFIPYAERVLELLKIFMVL 512 (721)
Q Consensus 448 ~~~--~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~-~~~~~~~~~i~~~l~~~l~~ 512 (721)
..+ +..-.+++.-++..+++.+++-....+-..+.+++.++..++ .+....++.++..|...+..
T Consensus 254 p~fs~~v~Sskfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d~~~~L~~i~~~L~~ymP~ 321 (556)
T PF05918_consen 254 PFFSRGVSSSKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQDARQLLPSIFQLLKKYMPS 321 (556)
T ss_dssp GG-BTTB--HHHHHHHHHHTCCCTT-----HHHHHHHHHHHHHTT----THHHHHHHHHHHHHTTS--
T ss_pred HHhcCCCChHHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHhCCC
Confidence 222 122335666666666666666566677788888887777666 33445666677766666653
No 143
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.90 E-value=0.054 Score=57.90 Aligned_cols=157 Identities=15% Similarity=0.141 Sum_probs=103.6
Q ss_pred CCcchHHHHHHhccCCc-----HHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhh
Q 004960 115 EWPDLLPFLFQFSQSEQ-----EEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLE 189 (721)
Q Consensus 115 ~~~~ll~~l~~~l~~~~-----~~~~~~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~ 189 (721)
...-++..+-+.+.+++ +...++++.++..+.++.+......++.++......=-+..+++.-..+...++.+..
T Consensus 459 ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~ 538 (982)
T KOG2022|consen 459 LLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSN 538 (982)
T ss_pred HHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccccCChhHHHHHHHHHHHHHH
Confidence 34455666667776655 6777889999999988877654444444443332221122477777888889999888
Q ss_pred hcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHhhcCCCCChHHHHHH
Q 004960 190 FTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQA 269 (721)
Q Consensus 190 ~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a 269 (721)
|..++ ..+++..++.+.+.+. +.+...++...+..+.+..+..+.++..+++..+-+.+.........|...
T Consensus 539 ~l~e~------P~~ln~sl~~L~~~Lh--~sk~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~kl 610 (982)
T KOG2022|consen 539 WLGEH------PMYLNPSLPLLFQGLH--NSKESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDRLKL 610 (982)
T ss_pred HHhcC------CcccCchHHHHHHHhc--CchHHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHHHHH
Confidence 87543 1233444444444553 445555677778999998888888888888888877665555566678888
Q ss_pred HHHHHHHHHH
Q 004960 270 IQIISWLAKY 279 (721)
Q Consensus 270 ~~~l~~l~~~ 279 (721)
+..++.+...
T Consensus 611 m~sIGyvls~ 620 (982)
T KOG2022|consen 611 MKSIGYVLSR 620 (982)
T ss_pred HHHHHHHHHh
Confidence 8877766643
No 144
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=97.89 E-value=0.0012 Score=55.80 Aligned_cols=154 Identities=18% Similarity=0.314 Sum_probs=105.8
Q ss_pred HHHHHHHHHHhhcCC-HHHHHHHHHHHHHHHcc--ccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhh-hhhhhcc
Q 004960 78 LVKQSLIESITLEHS-APVRRASANVVSIIAKY--AVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLT-ETIGQTF 153 (721)
Q Consensus 78 ~i~~~ll~~l~~e~~-~~vr~~~~~~l~~i~~~--~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~-~~~~~~~ 153 (721)
+||+.++.+|..+.. ...-+.++++++.++.. ..+++.|+++...+...-.+ .+ ..|+.++..+. ...++.+
T Consensus 3 eikplLIsCL~~q~~k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~~~-e~---~kA~~IF~~L~~~l~~efl 78 (174)
T PF04510_consen 3 EIKPLLISCLTMQETKESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLSEN-EP---VKAFHIFICLPMPLYGEFL 78 (174)
T ss_pred chHHHHHHHHHhhcccHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhhcc-ch---HHHHHHHHhCCchhhhhHH
Confidence 578899999986533 45667778888887763 34668999999888876532 22 46788888877 4556677
Q ss_pred cccHHHHHHHHHHhhCCCCCHHH--HHHHHH-HHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCH-HHHHHHHHH
Q 004960 154 RPHFADMQALLLKCLQDETSNRV--RIAALK-AIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEE-DVAVIAFEI 229 (721)
Q Consensus 154 ~~~~~~l~~~l~~~l~~~~~~~v--r~~a~~-~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~-~~~~~a~~~ 229 (721)
.+.++.+++.+.+.|.++.+.++ ...|+. ++...+...+.......++++++.++..+.+.+..+.+ .....+++-
T Consensus 79 ~~~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~~~~~vk~L~~~mv~Sv~elV~~g~E~~~l~rgl~~ 158 (174)
T PF04510_consen 79 IPFMENLLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSMRVDLVKELLPKMVKSVKELVERGMEVGFLRRGLRD 158 (174)
T ss_pred HHHHHHHHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 88889999999999988433333 334443 33334444434444566788999999988888877666 666777766
Q ss_pred HHHHhc
Q 004960 230 FDELIE 235 (721)
Q Consensus 230 l~~l~~ 235 (721)
+..+..
T Consensus 159 ~e~~v~ 164 (174)
T PF04510_consen 159 FESFVS 164 (174)
T ss_pred HHHHHH
Confidence 655543
No 145
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.89 E-value=5.8e-05 Score=58.65 Aligned_cols=86 Identities=26% Similarity=0.428 Sum_probs=67.4
Q ss_pred HHHHHhhc-CCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccch
Q 004960 380 LHIVLGAL-RDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFL 458 (721)
Q Consensus 380 ~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~ 458 (721)
++.+++.+ +|+++.||..++++++.+.. +..++.+.+.++++++.||..++++|+.+- -
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD----------PEAIPALIELLKDEDPMVRRAAARALGRIG----------D 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH----------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------C
Confidence 45677777 89999999999999995432 266888888889999999999999999873 2
Q ss_pred HHHHHHHHHhhcCC-ChhHHHHHHHHHH
Q 004960 459 DPLMGKLLAALENS-PRNLQETCMSAIG 485 (721)
Q Consensus 459 ~~i~~~l~~~l~~~-~~~v~~~~l~~l~ 485 (721)
+..++.|.+.+.++ +..+|..++.++|
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 45666777777665 5667898888875
No 146
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=97.87 E-value=0.091 Score=64.10 Aligned_cols=263 Identities=17% Similarity=0.187 Sum_probs=141.7
Q ss_pred HHHhccCCcHHHHHHHHHHHHHhhhhhhh--cc----cccHHHHHHHHHHh-hCCCCCHHHHHHHHHHHHHhhhhcCChh
Q 004960 123 LFQFSQSEQEEHREVALILFSSLTETIGQ--TF----RPHFADMQALLLKC-LQDETSNRVRIAALKAIGSFLEFTNDGA 195 (721)
Q Consensus 123 l~~~l~~~~~~~~~~al~~l~~i~~~~~~--~~----~~~~~~l~~~l~~~-l~~~~~~~vr~~a~~~l~~l~~~~~~~~ 195 (721)
+...+...+.+.|..+..++..++..... .. ..++..++..+..+ +.+ +++.+|...+..+. ...
T Consensus 486 ~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~-~~~~i~~~v~~~l~-------~~~ 557 (2341)
T KOG0891|consen 486 VDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIAD-TDPDIRIRVLSSLN-------ERF 557 (2341)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccC-CCcchhhhHHhhhc-------cch
Confidence 44455566777888777777666655432 00 12244455544443 345 78888877776665 001
Q ss_pred hHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 004960 196 EVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISW 275 (721)
Q Consensus 196 ~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~ 275 (721)
+. +-.-|..+..+...+.+..-..+..+...++.+....|.++-+.+....-.+...+..... .-+...+..-+..
T Consensus 558 ~~---~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~-~r~~~~~a~~~~~ 633 (2341)
T KOG0891|consen 558 DA---QLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGM-ARTKEESAKLLCE 633 (2341)
T ss_pred hh---hhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcch-HHhHHHHHHHhhH
Confidence 10 1112223333334555566677888888888888877766555444333322222211110 0111112222222
Q ss_pred HHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcCcc---ccHhHHHHHHhhhc-CCCh
Q 004960 276 LAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKH---VFPPVFEFASVSCQ-NASP 351 (721)
Q Consensus 276 l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~---~~~~i~~~l~~~l~-~~~~ 351 (721)
++...+..+. +++.+++..+++.+.+.+ .-.-.++..++..++...|.. .....++.+.+.+. ..+.
T Consensus 634 ~i~~~~~~i~--~~v~~~l~~~~~~~~~~~-------s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~ 704 (2341)
T KOG0891|consen 634 LIISSPVLIS--PYVGPILLVLLPKLQDPS-------SGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSL 704 (2341)
T ss_pred HHHHHHHHHH--hhcCchHHHHHHHHhccc-------hhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhh
Confidence 2222222222 456667777777777655 244556677888888777722 22344555554443 3466
Q ss_pred hhHhHHHHHHHHHhhccHHHHHHh--HHHHHHHHHhhcCC-CCHhHHHHHHHHHHHHH
Q 004960 352 KYREAAVTAIGIISEGCAEWMKEK--LESVLHIVLGALRD-PEQFVRGAASFALGQFA 406 (721)
Q Consensus 352 ~~r~~al~~l~~i~~~~~~~~~~~--l~~i~~~l~~~l~d-~~~~vr~~a~~~l~~l~ 406 (721)
..|.+++.+++.+....+-.+.++ .|.++..+...++. ....+|..+...+|...
T Consensus 705 ~rr~aslk~l~~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g 762 (2341)
T KOG0891|consen 705 GKRLAALKALGQLESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLG 762 (2341)
T ss_pred hchhHHHHHhhhhhcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhc
Confidence 788999999999987654333333 34555555555543 35567777777777544
No 147
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.87 E-value=0.011 Score=59.82 Aligned_cols=243 Identities=16% Similarity=0.093 Sum_probs=152.9
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccccH
Q 004960 78 LVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHF 157 (721)
Q Consensus 78 ~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~ 157 (721)
.....++..|..+.+..++..++.++. .. .-+..+..+.+.+.+.++.++..+...|+.+- .
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~---~~-----~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~----------~ 115 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALL---AQ-----EDALDLRSVLAVLQAGPEGLCAGIQAALGWLG----------G 115 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHh---cc-----CChHHHHHHHHHhcCCCHHHHHHHHHHHhcCC----------c
Confidence 345567777765567777665444432 11 11224889999999998889999999998763 3
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCc
Q 004960 158 ADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESP 237 (721)
Q Consensus 158 ~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~ 237 (721)
+...+.+...+.+ .++.+|..++.+++..- .+ -.+.+.. .+++.++.++..|+.+++.+-...
T Consensus 116 ~~a~~~L~~~L~~-~~p~vR~aal~al~~r~---~~---------~~~~L~~----~L~d~d~~Vra~A~raLG~l~~~~ 178 (410)
T TIGR02270 116 RQAEPWLEPLLAA-SEPPGRAIGLAALGAHR---HD---------PGPALEA----ALTHEDALVRAAALRALGELPRRL 178 (410)
T ss_pred hHHHHHHHHHhcC-CChHHHHHHHHHHHhhc---cC---------hHHHHHH----HhcCCCHHHHHHHHHHHHhhcccc
Confidence 5667778888888 89999998887766511 11 1223333 567889999999999999886532
Q ss_pred ccchhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHH
Q 004960 238 APLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDR 317 (721)
Q Consensus 238 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~ 317 (721)
.++.+. ....+. ++.+|..|+..+..+.. +.....+........ ...+.
T Consensus 179 ------a~~~L~----~al~d~--~~~VR~aA~~al~~lG~------------~~A~~~l~~~~~~~g-------~~~~~ 227 (410)
T TIGR02270 179 ------SESTLR----LYLRDS--DPEVRFAALEAGLLAGS------------RLAWGVCRRFQVLEG-------GPHRQ 227 (410)
T ss_pred ------chHHHH----HHHcCC--CHHHHHHHHHHHHHcCC------------HhHHHHHHHHHhccC-------ccHHH
Confidence 122222 223333 78999999887654431 111222222222211 12222
Q ss_pred HHHHHHHHHHHHcCccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHH
Q 004960 318 AAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGA 397 (721)
Q Consensus 318 ~a~~~l~~l~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~ 397 (721)
.+...+... +. +..++.+...++++. .|..++.++|.+... ..++.++..+.|+. ++..
T Consensus 228 ~l~~~lal~----~~---~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p----------~av~~L~~~l~d~~--~aR~ 286 (410)
T TIGR02270 228 RLLVLLAVA----GG---PDAQAWLRELLQAAA--TRREALRAVGLVGDV----------EAAPWCLEAMREPP--WARL 286 (410)
T ss_pred HHHHHHHhC----Cc---hhHHHHHHHHhcChh--hHHHHHHHHHHcCCc----------chHHHHHHHhcCcH--HHHH
Confidence 222222211 21 256666666666654 899999999988764 56777888887654 8889
Q ss_pred HHHHHHHHHh
Q 004960 398 ASFALGQFAE 407 (721)
Q Consensus 398 a~~~l~~l~~ 407 (721)
|-+++..+..
T Consensus 287 A~eA~~~ItG 296 (410)
T TIGR02270 287 AGEAFSLITG 296 (410)
T ss_pred HHHHHHHhhC
Confidence 9999888764
No 148
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=97.86 E-value=0.054 Score=56.81 Aligned_cols=299 Identities=14% Similarity=0.112 Sum_probs=159.5
Q ss_pred HHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCC-cHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCC
Q 004960 93 APVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSE-QEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDE 171 (721)
Q Consensus 93 ~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~-~~~~~~~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~l~~~ 171 (721)
-.-|-.++.-++...... +-..-+++-.....++..+ ..+.|++++..+..+++.........-..+...+..--.+
T Consensus 4 l~~R~~a~~~l~~~i~~~-~~~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~- 81 (464)
T PF11864_consen 4 LSERIKAAEELCESIQKY-PLSSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSND- 81 (464)
T ss_pred HHHHHHHHHHHHHHHHhC-CchHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCCc-
Confidence 344555566565554332 2123333333444444433 4578999999999999876442221222222222111111
Q ss_pred CCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHh----------h-------------cCCHHHHHHHHH
Q 004960 172 TSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCL----------A-------------SGEEDVAVIAFE 228 (721)
Q Consensus 172 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l----------~-------------~~~~~~~~~a~~ 228 (721)
++-..|..|+.+|. ....+-.. ...++.|.+..-+.... . +.+.......+.
T Consensus 82 ~d~~~~l~aL~~LT---~~Grdi~~--~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~ 156 (464)
T PF11864_consen 82 DDFDLRLEALIALT---DNGRDIDF--FEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQ 156 (464)
T ss_pred hhHHHHHHHHHHHH---cCCcCchh--cccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHH
Confidence 23445665665554 33222100 01222232322222222 0 012334567788
Q ss_pred HHHHHhcCcccchh-hhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCC
Q 004960 229 IFDELIESPAPLLG-DSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEA 307 (721)
Q Consensus 229 ~l~~l~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~ 307 (721)
.+..+++....++. ..+..++..++.++..... +..-..++.++..++.+..- +.+-+..++..+.......
T Consensus 157 ~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~-~~di~~~L~vldaii~y~~i---P~~sl~~~i~vLCsi~~~~--- 229 (464)
T PF11864_consen 157 FLVNVIKFNFNYLDEDEISSLVDQICTICKSTSS-EDDIEACLSVLDAIITYGDI---PSESLSPCIEVLCSIVNSV--- 229 (464)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHcCcC---ChHHHHHHHHHHhhHhccc---
Confidence 88888888776665 6777788877777655543 33447888898888864211 0122445555554442221
Q ss_pred CCCCCCcHHHHHHHHHHHHHH-HcCccccHhHHHHHH--hhhcCCChhhHhHHHHHHHHHhhccHHHHHHh--HH--HHH
Q 004960 308 GEDDDLAPDRAAAEVIDTMAL-NLAKHVFPPVFEFAS--VSCQNASPKYREAAVTAIGIISEGCAEWMKEK--LE--SVL 380 (721)
Q Consensus 308 ~~~~~~~~~~~a~~~l~~l~~-~~~~~~~~~i~~~l~--~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~--l~--~i~ 380 (721)
+....+-.++..+.. ..|...+..+...+. ..-..++...-.+|+..++.+.-+.++.-.+. +. .++
T Consensus 230 ------~l~~~~w~~m~nL~~S~~g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl 303 (464)
T PF11864_consen 230 ------SLCKPSWRTMRNLLKSHLGHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVL 303 (464)
T ss_pred ------ccchhHHHHHHHHHcCccHHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHH
Confidence 233344455555553 233444444444441 11223456677799999999887653211111 22 488
Q ss_pred HHHHhhcCCCCHhHHHHHHHHHHHHH-hhhhH
Q 004960 381 HIVLGALRDPEQFVRGAASFALGQFA-EYLQP 411 (721)
Q Consensus 381 ~~l~~~l~d~~~~vr~~a~~~l~~l~-~~~~~ 411 (721)
+.+...++..++.|-...+.++.++. ..+..
T Consensus 304 ~sl~~al~~~~~~v~~eIl~~i~~ll~~~~~~ 335 (464)
T PF11864_consen 304 PSLLNALKSNSPRVDYEILLLINRLLDGKYGR 335 (464)
T ss_pred HHHHHHHhCCCCeehHHHHHHHHHHHhHhhhh
Confidence 89999999888888888888888877 44433
No 149
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=97.86 E-value=0.0084 Score=59.94 Aligned_cols=239 Identities=15% Similarity=0.249 Sum_probs=132.6
Q ss_pred hhcccccHHHHHHHHHHhhCC---------CCC----HHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhh
Q 004960 150 GQTFRPHFADMQALLLKCLQD---------ETS----NRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLA 216 (721)
Q Consensus 150 ~~~~~~~~~~l~~~l~~~l~~---------~~~----~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~ 216 (721)
|+.+..++...+..+...|.- +.. ..++..++..+..+....++ .+..++|.+++.....+.
T Consensus 73 Pe~fed~l~~wm~~f~~~L~~~~p~l~~~d~~e~~~l~kvK~~i~~~~~ly~~kY~e-----~f~~~l~~fv~~vw~lL~ 147 (370)
T PF08506_consen 73 PEFFEDNLSEWMEIFHKYLTYPNPALEEDDDDEPGLLEKVKAWICENLNLYAEKYEE-----EFEPFLPTFVQAVWNLLT 147 (370)
T ss_dssp -HHHHHTHHHHHHHHHHHHH--SGGG-TT-SSS--HHHHHHHHHHHHHHHHHHH-HH-----HHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHcCCCcccCCCCcccccHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 555555666666665554431 011 24666667777766665432 245677777666555443
Q ss_pred c-----CCHHHHHHHHHHHHHHhcCcc--cch--hhhHHHHHHHHH-H----------hhc-----------CCCCChHH
Q 004960 217 S-----GEEDVAVIAFEIFDELIESPA--PLL--GDSVKSIVHFSL-E----------VSS-----------SHNLEPNT 265 (721)
Q Consensus 217 ~-----~~~~~~~~a~~~l~~l~~~~~--~~~--~~~~~~l~~~~~-~----------~~~-----------~~~~~~~~ 265 (721)
. ........+++.|..+++... ..+ ++++..+++..+ . ..+ +.......
T Consensus 148 ~~~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Iie~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~Tr 227 (370)
T PF08506_consen 148 KISQQPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQIIEKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTR 227 (370)
T ss_dssp C--SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHHHHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SH
T ss_pred HhhhcccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHHHHhccCccCCCHHHHHHHccCHHHHHHhhccccccCCc
Confidence 2 223456678888888776531 122 344554443221 0 000 11113456
Q ss_pred HHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcCc------c--ccHh
Q 004960 266 RHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAK------H--VFPP 337 (721)
Q Consensus 266 r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~------~--~~~~ 337 (721)
|..|.+++..+++..+..+.+ .+...++.++...... ...+|..+.+|..++..++..... . ..-.
T Consensus 228 R~AA~dfl~~L~~~~~~~v~~--i~~~~i~~~l~~y~~~----~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~ 301 (370)
T PF08506_consen 228 RRAACDFLRSLCKKFEKQVTS--ILMQYIQQLLQQYASN----PSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVD 301 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH-----TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-
T ss_pred HHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHhhC----CcccHHHHHHHHHHHHHHHhhhccccCCccccccccc
Confidence 888999999999876554321 1223333333222221 123477888888888888754320 0 0112
Q ss_pred HHHHHHhh----hc---CCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHH
Q 004960 338 VFEFASVS----CQ---NASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFAL 402 (721)
Q Consensus 338 i~~~l~~~----l~---~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l 402 (721)
+.+++.+. +. +..+-.|..|+..+.......++ +.+..++|.+..+|.+++..|+..|+.++
T Consensus 302 v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~---~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 302 VVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPK---EQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-H---HHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCH---HHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 23333222 22 45667889999999988887665 46778999999999999999999998875
No 150
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.85 E-value=0.18 Score=62.49 Aligned_cols=513 Identities=14% Similarity=0.123 Sum_probs=259.6
Q ss_pred cccccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcC-CHHHHHHHHHHH
Q 004960 152 TFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASG-EEDVAVIAFEIF 230 (721)
Q Consensus 152 ~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~-~~~~~~~a~~~l 230 (721)
.+.++++-++..+..+++. .++....++..+..++.......-...+.+..+.+++.+...+... +......|++++
T Consensus 714 ~Llpylp~LM~PLv~aLkg--s~~lvsQgLRtlelcvDnltPefL~~~mepv~~~lmqaLw~~l~~~~~~s~s~~a~rIL 791 (3550)
T KOG0889|consen 714 SLLPYLPLLMKPLVFALKG--SPELVSQGLRTLELCVDNLTPEFLDPIMEPVRDDLMQALWSHLRPVPNYSYSHRALRIL 791 (3550)
T ss_pred HhhhhhhhhhhHHHHHhcC--CHHHHHHHHhHHHHHHhcCChHhhhHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHH
Confidence 3457778888888888854 6788888899888888766433222224555666666665555442 567788999999
Q ss_pred HHHhcCcccch-----------------------------hhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhH
Q 004960 231 DELIESPAPLL-----------------------------GDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKY 281 (721)
Q Consensus 231 ~~l~~~~~~~~-----------------------------~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~ 281 (721)
+.+.+.+..++ .-.+..++........+.+.+...|.++...+.......-
T Consensus 792 GKlgG~NRq~l~~~q~l~~~~~~~~~~~l~~s~~~~~~~~~lp~~~~i~sA~~~l~s~~~d~~~~~qa~~~l~~~~~~~~ 871 (3550)
T KOG0889|consen 792 GKLGGRNRQFLKRPQDLEEIDEDDIDIRLVFSFKGLAHPLLLPLSKLIRSAFDALVSPNSDPFYRKQAFKYLRCDLLLMV 871 (3550)
T ss_pred HhhcCcchhhcccccccccccCccccceEEEeccccCccccCchHHHHHHHHHHHhCccCCcchHHHHHHHHHHHHHHHH
Confidence 99977642221 1123345555555555554467778888776654432111
Q ss_pred h---hhhhcCChHHHHHHHH---hhhccCCC---C----CCCCCCcHHHHHHHHHHHHHHH-cCccccHhHHHHHHhhhc
Q 004960 282 N---SLKKHKLVIPILQVMC---PLLAESNE---A----GEDDDLAPDRAAAEVIDTMALN-LAKHVFPPVFEFASVSCQ 347 (721)
Q Consensus 282 ~---~~~~~~~~~~il~~l~---~~l~~~~~---~----~~~~~~~~~~~a~~~l~~l~~~-~~~~~~~~i~~~l~~~l~ 347 (721)
. .++.. ...+.+..- ....+..+ + ........+.....++..+.-. ..++..+...+.+..
T Consensus 872 ~~~~~~~~~--~~~l~~~~~~~i~~~~e~~~~n~~~~~~~~~~~~a~~~~~~~~l~~~~~a~~~~elr~~a~~~~~~--- 946 (3550)
T KOG0889|consen 872 NLSADFKSS--IRQLLTLVVWSIDLRLECCEINLDLTERYKSQDYSDRSIFVNALISLFYATSCKELRDEAQDFLEA--- 946 (3550)
T ss_pred hhhccchhh--HHHHHHhhcchHHHhhHhhhccccccccccccchhHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHH---
Confidence 0 11100 111111111 00000000 0 0000112222222222111111 111111111111110
Q ss_pred CCChhhHhHHHHHHHHHhhccH----H-------HHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHH----
Q 004960 348 NASPKYREAAVTAIGIISEGCA----E-------WMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPE---- 412 (721)
Q Consensus 348 ~~~~~~r~~al~~l~~i~~~~~----~-------~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---- 412 (721)
-.|..++.+......... . ...-...-+++.+..++..++..++..+..++..+.......
T Consensus 947 ----il~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~lD~~i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~ 1022 (3550)
T KOG0889|consen 947 ----ILRHFALHGVVLYTGSNQLKHSNFGSNLQYKKMLDPSTFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSP 1022 (3550)
T ss_pred ----HHHHHHHHHHHHhhcchhccccccccccccccccCHHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCc
Confidence 012222211111111000 0 000112345688889999999999999999999886544211
Q ss_pred ----HHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhh-ccccchHHHHHHHHHhhcCCChhHHH----HHHHH
Q 004960 413 ----IVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGE-EILPFLDPLMGKLLAALENSPRNLQE----TCMSA 483 (721)
Q Consensus 413 ----~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~-~~~~~~~~i~~~l~~~l~~~~~~v~~----~~l~~ 483 (721)
..+.++.+++.+.+...++...-+...+.+|..++...+. .+..+...++..+.-.+.+...++.. .+-.+
T Consensus 1023 ~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~ 1102 (3550)
T KOG0889|consen 1023 ERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIESMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDI 1102 (3550)
T ss_pred chhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehhhchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHH
Confidence 1246788888888888888777888888888888887763 23355567777777766654322211 11122
Q ss_pred HHHHHHHh----h-hcch-hhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHh-ccC
Q 004960 484 IGSVAAAA----E-QAFI-PYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAIS-GFG 556 (721)
Q Consensus 484 l~~l~~~~----~-~~~~-~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~-~l~ 556 (721)
+-.+.... . ..-. .....++..+..-+. +++..+|..+..++..++...|+ .....+.++-+.++. .+.
T Consensus 1103 l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~---npN~~VR~~~~~~L~~i~~~s~~-~v~~L~~p~K~~ll~p~f~ 1178 (3550)
T KOG0889|consen 1103 LMDILRVIFIDELAEEERAKSAMNVFSPLVLELF---NPNSDVREFSQKLLRLISELSGK-SVVKLLEPFKDVLLSPIFK 1178 (3550)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHc---CCchHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHhccccc
Confidence 22111111 1 1111 123333333333332 23346888899999888876654 222222222222211 111
Q ss_pred CCC-hhhHHHHHHHHH--HHHHHcccCcccchhhhHHHHHhhccCCCCCccCCCCCccccccCCCCCCCCchhhhhcccc
Q 004960 557 LEF-SELREYTHGFFS--NIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVR 633 (721)
Q Consensus 557 ~~~-~~~~~~~~~~l~--~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (721)
.+. .--+....+-+. ..|...|+.+..|-+.+.-......... +.++++.++ .... .
T Consensus 1179 k~lr~~p~~~qig~vd~~~fC~~l~p~~f~~~~~l~~l~~~~~~La-------~~~~~~~~~-i~k~------------~ 1238 (3550)
T KOG0889|consen 1179 KPLRALPFTIQIGHLDAITFCLSLGPCLFDFTEELYRLKRFLIALA-------DAEEDELAT-IQKT------------S 1238 (3550)
T ss_pred cccccCCHHHHhhhHHHHHHHHHcCCcccCchHHHHHHHHHHHHhh-------hhhhhhhhh-hhcc------------c
Confidence 110 001111222222 2355667766666555544322211110 011111111 1110 0
Q ss_pred ceeeecchhhhHHHHHHHHHHHHHHccc---cccchHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHH
Q 004960 634 NISVRTGVLDEKAAATQALGLFALHTKS---SYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTA 699 (721)
Q Consensus 634 ~~~~~~~~~~~k~~a~~~l~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~ 699 (721)
.....+...-.|..++++++......+- +..+|.+.++..+.+.+.....++-..+..++...+..
T Consensus 1239 ~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~~~Ei~~~~~~~l~~v~~~ 1307 (3550)
T KOG0889|consen 1239 DYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKRSSELIEVALEGLRKVLAQ 1307 (3550)
T ss_pred ccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhhc
Confidence 0112344556799999999998887763 46788999999999998888888888888777666543
No 151
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.81 E-value=0.00096 Score=62.54 Aligned_cols=188 Identities=13% Similarity=0.144 Sum_probs=122.4
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHccccCCCCCc--chHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhh--ccccc
Q 004960 81 QSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWP--DLLPFLFQFSQSEQEEHREVALILFSSLTETIGQ--TFRPH 156 (721)
Q Consensus 81 ~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~~--~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~--~~~~~ 156 (721)
+.++..|.+..++.++..+..+++..+.+...+..+. ..++.+...+.++++..+..|+.++.++...... .+..+
T Consensus 15 ~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~ 94 (254)
T PF04826_consen 15 QKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMY 94 (254)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHH
Confidence 4577777766799999999999999877554333332 3589999999999999999999999988765432 23334
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcC
Q 004960 157 FADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIES 236 (721)
Q Consensus 157 ~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~ 236 (721)
++.++..+ ..++-+..++.+++++|.++.-.. +. ...+...+|.++. .+..++..++..++++|..++..
T Consensus 95 i~~Vc~~~---~s~~lns~~Q~agLrlL~nLtv~~-~~--~~~l~~~i~~ll~----LL~~G~~~~k~~vLk~L~nLS~n 164 (254)
T PF04826_consen 95 IPQVCEET---VSSPLNSEVQLAGLRLLTNLTVTN-DY--HHMLANYIPDLLS----LLSSGSEKTKVQVLKVLVNLSEN 164 (254)
T ss_pred HHHHHHHH---hcCCCCCHHHHHHHHHHHccCCCc-ch--hhhHHhhHHHHHH----HHHcCChHHHHHHHHHHHHhccC
Confidence 44444433 233246789999999999885332 11 1123445666655 66678889999999999999886
Q ss_pred cccchhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 004960 237 PAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKY 279 (721)
Q Consensus 237 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~ 279 (721)
....-.-.-.+.+..++.++..+ .+.+....++.++.++.+.
T Consensus 165 p~~~~~Ll~~q~~~~~~~Lf~~~-~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 165 PDMTRELLSAQVLSSFLSLFNSS-ESKENLLRVLTFFENINEN 206 (254)
T ss_pred HHHHHHHHhccchhHHHHHHccC-CccHHHHHHHHHHHHHHHh
Confidence 42211111112233333444433 2456666777776666654
No 152
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.79 E-value=0.011 Score=61.36 Aligned_cols=294 Identities=10% Similarity=0.052 Sum_probs=138.8
Q ss_pred hHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHH
Q 004960 119 LLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVV 198 (721)
Q Consensus 119 ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~ 198 (721)
-...++...+ ++.+.+..|...+..+++.+|+ ..+..+..++.+..| .+..||..|++.|..++...
T Consensus 24 ~y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~----l~~~Ai~a~~DLcED-ed~~iR~~aik~lp~~ck~~------- 90 (556)
T PF05918_consen 24 DYKEILDGVK-GSPKEKRLAAQFIPKFFKHFPD----LQEEAINAQLDLCED-EDVQIRKQAIKGLPQLCKDN------- 90 (556)
T ss_dssp HHHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GG----GHHHHHHHHHHHHT--SSHHHHHHHHHHGGGG--T--------
T ss_pred HHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChh----hHHHHHHHHHHHHhc-ccHHHHHHHHHhHHHHHHhH-------
Confidence 4455556655 4677888888999988887775 345666666667778 89999999999998888753
Q ss_pred HHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCccc-chhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 004960 199 KFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAP-LLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLA 277 (721)
Q Consensus 199 ~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~ 277 (721)
..+++.+..+|.++++.+++.....+-+.|..+....+. .+...+.++. ....-++.+|..++.++..-.
T Consensus 91 --~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~-------~~~~~de~~Re~~lkFl~~kl 161 (556)
T PF05918_consen 91 --PEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLTGLFSQIE-------SSKSGDEQVRERALKFLREKL 161 (556)
T ss_dssp ---T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH----------HS-HHHHHHHHHHHHHHG
T ss_pred --HHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH-------hcccCchHHHHHHHHHHHHHH
Confidence 346777888888888888888888888888888776542 2222222222 111226778999998876433
Q ss_pred HHhHh-hhhh-cCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHH--Hc----CccccHhHHHHHHhhh---
Q 004960 278 KYKYN-SLKK-HKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMAL--NL----AKHVFPPVFEFASVSC--- 346 (721)
Q Consensus 278 ~~~~~-~~~~-~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~--~~----~~~~~~~i~~~l~~~l--- 346 (721)
...+. .+.+ .+.-..++..+...|.+.. . ..-..+++.|.. .+ +..-...+++.+.+..
T Consensus 162 ~~l~~~~~~p~~E~e~~i~~~ikkvL~DVT---------a-eEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld 231 (556)
T PF05918_consen 162 KPLKPELLTPQKEMEEFIVDEIKKVLQDVT---------A-EEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLD 231 (556)
T ss_dssp GGS-TTTS---HHHHHHHHHHHHHHCTT-----------H-HHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTT
T ss_pred hhCcHHHhhchHHHHHHHHHHHHHHHHhcc---------H-HHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccC
Confidence 22111 1110 0111223344444443211 0 111122222221 11 1111234555555332
Q ss_pred ---cCCChhhHhHHHHHHHHHhhccH--HHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhH-HHHHhhhhH
Q 004960 347 ---QNASPKYREAAVTAIGIISEGCA--EWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQP-EIVSHYESV 420 (721)
Q Consensus 347 ---~~~~~~~r~~al~~l~~i~~~~~--~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~~~ 420 (721)
...+.......+.++......+. ..-..++.-++..+++.+++-....+...+.++..++.++++ +....++.+
T Consensus 232 ~~f~~sD~e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d~~~~L~~i 311 (556)
T PF05918_consen 232 QPFDPSDPESIDRLISCLRQALPFFSRGVSSSKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQDARQLLPSI 311 (556)
T ss_dssp S---SSSHHHHHHHHHHHHHHGGG-BTTB--HHHHHHHHHHTCCCTT-----HHHHHHHHHHHHHTT----THHHHHHHH
T ss_pred CCCCCcCHHHHHHHHHHHHHhhHHhcCCCChHHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCcccHHHHHHHH
Confidence 12233333333333333222211 011223334444555566655666777788888888887763 223344555
Q ss_pred HHHHHHhccCC--ChHHHHHHHHHHH
Q 004960 421 LPCILNALEDE--SDEVKEKSYYALA 444 (721)
Q Consensus 421 l~~l~~~l~~~--~~~v~~~a~~al~ 444 (721)
+..|...+... .+.....-+.|+.
T Consensus 312 ~~~L~~ymP~~~~~~~l~fs~vEcLL 337 (556)
T PF05918_consen 312 FQLLKKYMPSKKTEPKLQFSYVECLL 337 (556)
T ss_dssp HHHHHTTS----------HHHHHHHH
T ss_pred HHHHHHhCCCCCCCCcccchHhhHHH
Confidence 55555544432 2334434444443
No 153
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.086 Score=55.28 Aligned_cols=398 Identities=14% Similarity=0.098 Sum_probs=209.7
Q ss_pred hhhhcCCCHHHHHHHHHHHHHHHh----------hcCCHHHHHHH-------------HHHHHHHHccccCCCCCcchHH
Q 004960 65 TGHWAKLSPQLKQLVKQSLIESIT----------LEHSAPVRRAS-------------ANVVSIIAKYAVPAGEWPDLLP 121 (721)
Q Consensus 65 ~~~w~~~~~~~~~~i~~~ll~~l~----------~e~~~~vr~~~-------------~~~l~~i~~~~~~~~~~~~ll~ 121 (721)
...|.-+.|..+-.+..-+++++. +|+++.+|+.. +..+-.++.+. ++..+..+++
T Consensus 333 d~tw~l~ePhlq~ii~~vIfPllc~see~eElfEnDp~eyirry~df~d~g~spdlaal~fl~~~~sKr-ke~TfqgiLs 411 (970)
T COG5656 333 DQTWRLMEPHLQYIISGVIFPLLCLSEEEEELFENDPDEYIRRYYDFFDNGLSPDLAALFFLIISKSKR-KEETFQGILS 411 (970)
T ss_pred HhhHhhhccHHHHHHHhhhhhhcCCChhhHHHHhcCHHHHHHHhcchhcCCCChhHHHHHHHHHHhccc-chhhhhhHHH
Confidence 346776666666666666666553 23445566532 22222333333 2235788888
Q ss_pred HHHHhcc-C-------CcHHHHHHHHHHHHHhhhh--hhhcccccHH-HHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhh
Q 004960 122 FLFQFSQ-S-------EQEEHREVALILFSSLTET--IGQTFRPHFA-DMQALLLKCLQDETSNRVRIAALKAIGSFLEF 190 (721)
Q Consensus 122 ~l~~~l~-~-------~~~~~~~~al~~l~~i~~~--~~~~~~~~~~-~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~ 190 (721)
++...+. + +++...++|+..+..+..- .+..+...+. -+++.++-.+++ +..-.|..||..+..+-..
T Consensus 412 f~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s-~ygfL~Srace~is~~eeD 490 (970)
T COG5656 412 FLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRS-NYGFLKSRACEFISTIEED 490 (970)
T ss_pred HHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcC-cccchHHHHHHHHHHHHHh
Confidence 8888773 1 2345567999999998862 2222222232 345666667777 7777888899988888433
Q ss_pred cCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCc--ccchhhhHHHHHHHHHHhhcCCCCChHHHHH
Q 004960 191 TNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESP--APLLGDSVKSIVHFSLEVSSSHNLEPNTRHQ 268 (721)
Q Consensus 191 ~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~ 268 (721)
.++ ..++..+.+....++++++-.++..|.-++..++.+. ...+..|++..++.++.+...- +.+.-..
T Consensus 491 fkd-------~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~f--eiD~LS~ 561 (970)
T COG5656 491 FKD-------NGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTF--EIDPLSM 561 (970)
T ss_pred ccc-------chHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccc--cchHHHH
Confidence 332 2233344444445777777677777766776666544 3456778888888877654332 3333333
Q ss_pred HHHHHHHHHHHhHhhhhhcCChHH----HHHHHHhhhccCCCCCCCC---CCcHHHHHHHHHHHHHHHcCccccHhHHHH
Q 004960 269 AIQIISWLAKYKYNSLKKHKLVIP----ILQVMCPLLAESNEAGEDD---DLAPDRAAAEVIDTMALNLAKHVFPPVFEF 341 (721)
Q Consensus 269 a~~~l~~l~~~~~~~~~~~~~~~~----il~~l~~~l~~~~~~~~~~---~~~~~~~a~~~l~~l~~~~~~~~~~~i~~~ 341 (721)
.+ ..+++..+..+. +|.+. +.+..+++..+.-++..|. ..+-..+|.-.+.++...+-
T Consensus 562 vM---e~fVe~fseELs--pfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiL---------- 626 (970)
T COG5656 562 VM---ESFVEYFSEELS--PFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMIL---------- 626 (970)
T ss_pred HH---HHHHHHhHHhhc--hhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHH----------
Confidence 33 344444433332 22333 3332222222111111000 00111122222222221110
Q ss_pred HHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHH
Q 004960 342 ASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVL 421 (721)
Q Consensus 342 l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l 421 (721)
. .+..+..++.....+.|.+--.+++.-..+-..|+..+..+.-.. ..+.+...++.
T Consensus 627 --S--------------------len~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf~s-keI~pimwgi~ 683 (970)
T COG5656 627 --S--------------------LENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDGYTFMS-KEIEPIMWGIF 683 (970)
T ss_pred --h--------------------cccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHH-HHhhhhhhHHH
Confidence 0 011111111112233343333444555555566666666543322 33445566777
Q ss_pred HHHHHhccCCCh-HHHHHHHHHHHHHHHhhhhccc---cchHHHHHHHHHhhcCCCh--hHHHHHHHHHHHHHHHhhhc-
Q 004960 422 PCILNALEDESD-EVKEKSYYALAAFCEDMGEEIL---PFLDPLMGKLLAALENSPR--NLQETCMSAIGSVAAAAEQA- 494 (721)
Q Consensus 422 ~~l~~~l~~~~~-~v~~~a~~al~~l~~~~~~~~~---~~~~~i~~~l~~~l~~~~~--~v~~~~l~~l~~l~~~~~~~- 494 (721)
+.+.+.+.++.. .--..+..++.+++...+..+. -|...+...+..++.+.+. +-+..++..+..++-..++.
T Consensus 684 Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd~L 763 (970)
T COG5656 684 ELLLNLLIDEITAVYSEEVADALDNFITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRDEL 763 (970)
T ss_pred HHHHhcccccchhhhHHHHHHHHHHHHHhCccccccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccchh
Confidence 777777776653 3456778889999887765443 3666666777777776644 44567777777888777763
Q ss_pred chhhHHHHHHHHHHHHh
Q 004960 495 FIPYAERVLELLKIFMV 511 (721)
Q Consensus 495 ~~~~~~~i~~~l~~~l~ 511 (721)
..+|.+-+.....+.+.
T Consensus 764 l~qy~plfi~vags~l~ 780 (970)
T COG5656 764 LSQYLPLFISVAGSGLK 780 (970)
T ss_pred HHhhhHHHHHHHhhhhh
Confidence 44566655555544443
No 154
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.72 E-value=0.015 Score=58.59 Aligned_cols=222 Identities=23% Similarity=0.260 Sum_probs=136.6
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcc
Q 004960 159 DMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPA 238 (721)
Q Consensus 159 ~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~ 238 (721)
...+.+.+.+.+ .+..+|..+...++.+- ....+|.+.. .+.+.++.++..+..+++.+..
T Consensus 43 ~~~~~~~~~l~~-~~~~vr~~aa~~l~~~~-----------~~~av~~l~~----~l~d~~~~vr~~a~~aLg~~~~--- 103 (335)
T COG1413 43 EAADELLKLLED-EDLLVRLSAAVALGELG-----------SEEAVPLLRE----LLSDEDPRVRDAAADALGELGD--- 103 (335)
T ss_pred hhHHHHHHHHcC-CCHHHHHHHHHHHhhhc-----------hHHHHHHHHH----HhcCCCHHHHHHHHHHHHccCC---
Confidence 566777888888 68999998887744221 1334555555 6777889999999988777654
Q ss_pred cchhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCC-----CCCCCC
Q 004960 239 PLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEA-----GEDDDL 313 (721)
Q Consensus 239 ~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~-----~~~~~~ 313 (721)
+..++.++..+++ +.+..+|..+...+..+..... +.+ ++..+.+.... .+...+
T Consensus 104 -------~~a~~~li~~l~~-d~~~~vR~~aa~aL~~~~~~~a--------~~~----l~~~l~~~~~~~a~~~~~~~~~ 163 (335)
T COG1413 104 -------PEAVPPLVELLEN-DENEGVRAAAARALGKLGDERA--------LDP----LLEALQDEDSGSAAAALDAALL 163 (335)
T ss_pred -------hhHHHHHHHHHHc-CCcHhHHHHHHHHHHhcCchhh--------hHH----HHHHhccchhhhhhhhccchHH
Confidence 2233333334443 2377899999887776653211 222 22333222100 000112
Q ss_pred cHHHHHHHHHHHHHHHcCccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHh
Q 004960 314 APDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQF 393 (721)
Q Consensus 314 ~~~~~a~~~l~~l~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~ 393 (721)
..+..+...+..+.. +...+.+...+.+.+...|.++..+++.+.... ..+.+.+.+.+.|+++.
T Consensus 164 ~~r~~a~~~l~~~~~-------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~~~~ 228 (335)
T COG1413 164 DVRAAAAEALGELGD-------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSDESLE 228 (335)
T ss_pred HHHHHHHHHHHHcCC-------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCCCHH
Confidence 344444444443332 344555666677777788999999888887653 35567778888899999
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHH
Q 004960 394 VRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALA 444 (721)
Q Consensus 394 vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~ 444 (721)
||..++..+|.+... ...+.+...+.+.+..++..+..++.
T Consensus 229 vr~~~~~~l~~~~~~----------~~~~~l~~~l~~~~~~~~~~~~~~~~ 269 (335)
T COG1413 229 VRKAALLALGEIGDE----------EAVDALAKALEDEDVILALLAAAALG 269 (335)
T ss_pred HHHHHHHHhcccCcc----------hhHHHHHHHHhccchHHHHHHHHHhc
Confidence 999998888865433 44556667777776666555444443
No 155
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=97.67 E-value=0.00033 Score=68.76 Aligned_cols=165 Identities=11% Similarity=0.152 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHHhhc-h-hhccCChHHHHHHHHhccCCCChhhHHH-HHHHHHHHHHHcccCcccchhhhHHHHHhhcc
Q 004960 521 RARATELLGLVAESVG-R-ARMEPILPPFVEAAISGFGLEFSELREY-THGFFSNIAGVLEDGFAQYLPLVVPLAFSSCN 597 (721)
Q Consensus 521 ~~~~~~~l~~l~~~~~-~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~-~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~ 597 (721)
|...+..+........ . ......++++++.++...+...|..|+. ++.+++.++..+|..+.++++.++..++.+.-
T Consensus 44 KkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl 123 (319)
T PF08767_consen 44 KKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTL 123 (319)
T ss_dssp HHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 3445555555543332 1 1233456788888877777667777755 88999999999999999999999999886532
Q ss_pred CCCCCccCCCCCccccccCCCCCCCCchhhhhccccceeeecchhhhHHHHHHHHHHHHHHccccccc----hHHHHHHH
Q 004960 598 LDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAP----FLEESLKI 673 (721)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~~~~~~~----~~~~~~~~ 673 (721)
. .+.++. ...++.|..-...+..+..++.+.+.. .+..+++.
T Consensus 124 ~------MI~~d~----------------------------~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~ids 169 (319)
T PF08767_consen 124 P------MINKDF----------------------------EEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDS 169 (319)
T ss_dssp H------HHSSTS----------------------------SSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHH
T ss_pred H------HHHhhh----------------------------hhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHH
Confidence 0 111110 123578999999999999998776643 36788899
Q ss_pred HHhcccCCChhHHHHHHHHHHHHHHHHHHhcccCCcchhHHHHHhhc
Q 004960 674 LVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNVSLCYHFFLLSC 720 (721)
Q Consensus 674 l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 720 (721)
+....++.+.+|...+.+++..++..+.. .++......|+.|+++.
T Consensus 170 i~wg~kh~~~~I~~~~L~~l~~ll~~~~~-~~~~~~~~F~~~y~~~i 215 (319)
T PF08767_consen 170 IVWGFKHTNREISETGLNILLELLNNVSK-TNPEFANQFYQQYYLDI 215 (319)
T ss_dssp HHHHHTSSSHHHHHHHHHHHHHHHHHHHH--SHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988 44555677888887654
No 156
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=0.13 Score=59.78 Aligned_cols=382 Identities=14% Similarity=0.102 Sum_probs=210.6
Q ss_pred cHHHHHHHHHHHHHHHcCc-cccHhHHHHHHhhhcC-CChhhHhHHHHHHHHHhhccHHHH-HHhHHHHHHHHHhhcCCC
Q 004960 314 APDRAAAEVIDTMALNLAK-HVFPPVFEFASVSCQN-ASPKYREAAVTAIGIISEGCAEWM-KEKLESVLHIVLGALRDP 390 (721)
Q Consensus 314 ~~~~~a~~~l~~l~~~~~~-~~~~~i~~~l~~~l~~-~~~~~r~~al~~l~~i~~~~~~~~-~~~l~~i~~~l~~~l~d~ 390 (721)
-.+-++.+++.+++...++ .++..+.+.+...+.+ .++..|-+-..++|.+-...+... .+++..-+..++....|+
T Consensus 891 ~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~illal~~Ds 970 (2067)
T KOG1822|consen 891 KLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTSVSILLALATDS 970 (2067)
T ss_pred HHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccHHHHHHHHhhcC
Confidence 4456688899999998884 3456666776666665 466777777889999887654322 234556566777777777
Q ss_pred C-HhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCC---hHHHHHHHHHHH------HHHHhhhhccccchH-
Q 004960 391 E-QFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDES---DEVKEKSYYALA------AFCEDMGEEILPFLD- 459 (721)
Q Consensus 391 ~-~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~---~~v~~~a~~al~------~l~~~~~~~~~~~~~- 459 (721)
+ |.|+.-++.++..+.+..++.+..+....+..+...+-... .+++..--.++. .++...++.+.|...
T Consensus 971 ~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~alittlgpeL~~N~~~ 1050 (2067)
T KOG1822|consen 971 TSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDEDALITTLGPELGPNGDK 1050 (2067)
T ss_pred CCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhHHHHHHhcccccCCCCcc
Confidence 5 59999999999999888777666777777777776665432 234433333444 677777766665432
Q ss_pred --------HHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHH
Q 004960 460 --------PLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLV 531 (721)
Q Consensus 460 --------~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l 531 (721)
..+-...-.+.++++.++.+++.|+..+.-..+. .-.++.+++.+...+.. ...-.|...+.|+..+
T Consensus 1051 d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr--~~n~~~lV~~L~~~l~s---~~~i~r~~~~~clrql 1125 (2067)
T KOG1822|consen 1051 DSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPR--HVNLDSLVLQLCSLLSS---SYLILRRASFSCLRQL 1125 (2067)
T ss_pred cchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcch--hccHHHHHHHHHHHhcc---hhhhhhhhHHhhhhHH
Confidence 2222222234555788899999999888766554 22356666666665532 1222334444444444
Q ss_pred HHhh-------------------chhh-ccCCh--HHHHHHHHhccCCCChhhHHHHHHHHHHHHHHc-ccCcccchhhh
Q 004960 532 AESV-------------------GRAR-MEPIL--PPFVEAAISGFGLEFSELREYTHGFFSNIAGVL-EDGFAQYLPLV 588 (721)
Q Consensus 532 ~~~~-------------------~~~~-~~~~~--~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~-~~~~~~~l~~i 588 (721)
+..- .++. +.|.. +..+-.++. ...+..++..+...|.++...+ ++.+..|+.-.
T Consensus 1126 ~~Re~sev~e~a~~L~~~~~~e~~~d~~~~pe~gLeg~l~~mld--~e~d~~l~~~I~~tl~~~~~~~~~~~ls~Wl~l~ 1203 (2067)
T KOG1822|consen 1126 VQREASEVCEYAQLLAKTLAVETSPDANIRPEAGLEGALFIMLD--TETDNKLLKNILETLSRMLNSLADELLSSWLMLL 1203 (2067)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhChhhhcCccccchHHHHHHcC--CchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3211 1111 12211 222222222 2346777788888888855444 33444444333
Q ss_pred HHHHHhhccCCC-CCccCCCCCccccccCCCCCCCCchhhh-h----c-cccceeeecchhhhHHHHHHHHHHHHHHccc
Q 004960 589 VPLAFSSCNLDD-GSAVDIDGSDDENINGFGGVSSDDEAHC-E----R-SVRNISVRTGVLDEKAAATQALGLFALHTKS 661 (721)
Q Consensus 589 ~~~ll~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~-~~~~~~~~~~~~~~k~~a~~~l~~~~~~~~~ 661 (721)
...+-....... ......+++++++.. +.||+.. . . ..+. .-.+.|.+|..|..++..+...+..
T Consensus 1204 k~~l~~~~~~s~~~e~s~~kd~~~~~~~------~~dDdt~~~t~~~~~~s~p--~~qprW~Trvfaa~cv~r~i~~c~a 1275 (2067)
T KOG1822|consen 1204 KDLLQAAEDFSASKELSGEKDEEDEEQE------SGDDDTVLTTVSRTDDSKP--LVQPRWPTRVFAAECVLRIINVCEA 1275 (2067)
T ss_pred HHHHHHhhhccccccccccccccchhhc------ccchhhHHhhhccccccCC--ccccccchHHHHHHHHHHHhhhhhh
Confidence 222221111110 000000001110000 0011100 0 0 0111 2233577899999999855443320
Q ss_pred ----------------------cccchHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHHhcccCCcc
Q 004960 662 ----------------------SYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNVS 710 (721)
Q Consensus 662 ----------------------~~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 710 (721)
.+.-++.++++.-.-.-.+.++..|....+.|..+++.+-...++.+.|
T Consensus 1276 ~~~h~d~~la~e~k~~n~e~~d~LvlhlsDLirmsFmaaT~~n~~Lrl~Gl~~L~~vi~~fSsvpEPeFpG 1346 (2067)
T KOG1822|consen 1276 VSAHFDMALASEHKLENLERNDYLVLHLSDLIRMSFMAATSDNSQLRLAGLESLEEVIKRFSSVPEPEFPG 1346 (2067)
T ss_pred hhhhhhHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHhcCchhhhhhccHHHHHHHHhccCCCCCCCCCc
Confidence 0111222222222222335678999999999999999998888877754
No 157
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.0047 Score=59.06 Aligned_cols=147 Identities=14% Similarity=0.144 Sum_probs=105.7
Q ss_pred cCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhh-hhHHHHHH
Q 004960 347 QNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY-ESVLPCIL 425 (721)
Q Consensus 347 ~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~l~~l~ 425 (721)
.+.+...|+.|+.-+..+++.......-.--..+..++..+++.+..+|..|++.+|..+..-|..-...+ .+.++.|+
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 35678899999999999888765322111113344455599999999999999999999998765333333 35788888
Q ss_pred HhccCC-ChHHHHHHHHHHHHHHHhhhhccccchH-HHHHHHHHhhcCC--ChhHHHHHHHHHHHHHHHhhh
Q 004960 426 NALEDE-SDEVKEKSYYALAAFCEDMGEEILPFLD-PLMGKLLAALENS--PRNLQETCMSAIGSVAAAAEQ 493 (721)
Q Consensus 426 ~~l~~~-~~~v~~~a~~al~~l~~~~~~~~~~~~~-~i~~~l~~~l~~~--~~~v~~~~l~~l~~l~~~~~~ 493 (721)
..+... +..+|..|+.|++.++++.+.....++. .=...|.++++++ +..++..++..++.+......
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s 244 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKS 244 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhh
Confidence 887744 4568999999999999998655444432 1255677778884 566778888888888876543
No 158
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=97.64 E-value=0.0029 Score=55.42 Aligned_cols=134 Identities=19% Similarity=0.224 Sum_probs=107.3
Q ss_pred ccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhcc-HHHHHHhHHHHHHHHHhhcCC-CCHhHHHHHHHHHHHHHhhhhH
Q 004960 334 VFPPVFEFASVSCQNASPKYREAAVTAIGIISEGC-AEWMKEKLESVLHIVLGALRD-PEQFVRGAASFALGQFAEYLQP 411 (721)
Q Consensus 334 ~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~-~~~~~~~l~~i~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~ 411 (721)
.+..+...+...++++++..|..++..++.+++.+ .+.+..+-...+..+++.++. +.+.++..++.+++.+......
T Consensus 22 ~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~ 101 (165)
T PF08167_consen 22 ALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRG 101 (165)
T ss_pred HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 45667778888899999999999999999999988 566667777888888888874 4667899999999999865431
Q ss_pred --H-----HHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhh
Q 004960 412 --E-----IVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAAL 469 (721)
Q Consensus 412 --~-----~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l 469 (721)
+ ..+.++.+++.+++.+++ ..+...++.+|..++...+..+.||...+-..+...+
T Consensus 102 ~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 102 KPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLSLL 164 (165)
T ss_pred CCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence 1 234678888888887776 4567889999999999999999999988877766544
No 159
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.63 E-value=0.22 Score=57.09 Aligned_cols=174 Identities=13% Similarity=0.113 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHHcC-ccccHhHHHHHHh-hhcCCChhhHhHHHHHHHHHhhccH-HHHHHhHHHHHHHHHhhcCCCCH
Q 004960 316 DRAAAEVIDTMALNLA-KHVFPPVFEFASV-SCQNASPKYREAAVTAIGIISEGCA-EWMKEKLESVLHIVLGALRDPEQ 392 (721)
Q Consensus 316 ~~~a~~~l~~l~~~~~-~~~~~~i~~~l~~-~l~~~~~~~r~~al~~l~~i~~~~~-~~~~~~l~~i~~~l~~~l~d~~~ 392 (721)
...+..+.+.++.... ....+.++..+.. ...+.+|+.|.+.+..+....-... -......+++...+...+.|...
T Consensus 1504 ~~~a~~~~~lm~~~~~~~~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i 1583 (1710)
T KOG1851|consen 1504 KNSALLCHSLMSLSWIGHHLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQI 1583 (1710)
T ss_pred HHHHHHHHHHHHhhccchhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHH
Confidence 3344455555544333 4455677777764 3456689999998888777653321 13344567888899999999989
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCC--hHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhc
Q 004960 393 FVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDES--DEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALE 470 (721)
Q Consensus 393 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~--~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~ 470 (721)
.||+.|+.+|+.+...-.-... ++-........+... ..-...|.-+|+.++-.++-.+..+++..+..+.....
T Consensus 1584 ~vre~Aa~~Lsgl~~~s~~~~~---~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~ 1660 (1710)
T KOG1851|consen 1584 EVREEAAKCLSGLLQGSKFQFV---SDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFAR 1660 (1710)
T ss_pred HHHHHHHHHHHHHHhccccccc---hHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcC
Confidence 9999999999988765321111 112222223333222 22345678889999988887777778877777766655
Q ss_pred CCChhHHHHHHHHHHHHHHHhhh
Q 004960 471 NSPRNLQETCMSAIGSVAAAAEQ 493 (721)
Q Consensus 471 ~~~~~v~~~~l~~l~~l~~~~~~ 493 (721)
++ ..++..+-.+++..-....+
T Consensus 1661 e~-~~i~~tvkktvseFrrth~D 1682 (1710)
T KOG1851|consen 1661 ES-AAIKQTVKKTVSEFRRTHAD 1682 (1710)
T ss_pred Cc-hHHHHHHHHHHHHHHHHhhh
Confidence 54 44555555554444333333
No 160
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.022 Score=59.30 Aligned_cols=116 Identities=22% Similarity=0.218 Sum_probs=89.0
Q ss_pred hcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcC-CCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHH
Q 004960 346 CQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALR-DPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCI 424 (721)
Q Consensus 346 l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l 424 (721)
.++.+-.+|.+|+.++|-+....++. ++..+..|. +-||.||..++.+||..|...+.. .--.+++.+
T Consensus 564 VsD~nDDVrRaAVialGFVl~~dp~~--------~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~---eAi~lLepl 632 (929)
T KOG2062|consen 564 VSDVNDDVRRAAVIALGFVLFRDPEQ--------LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK---EAINLLEPL 632 (929)
T ss_pred ccccchHHHHHHHHHheeeEecChhh--------chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH---HHHHHHhhh
Confidence 56778899999999999988664443 333444554 448999999999999998876642 112333333
Q ss_pred HHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCChh
Q 004960 425 LNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRN 475 (721)
Q Consensus 425 ~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~ 475 (721)
..|+...||..|+-++.-+.-...+.+.|-+..+.+.+.+++.+.+.+
T Consensus 633 ---~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dKhEd 680 (929)
T KOG2062|consen 633 ---TSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDKHED 680 (929)
T ss_pred ---hcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhhhhH
Confidence 458888899999999999988888889999999999999999887554
No 161
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=97.62 E-value=0.1 Score=52.96 Aligned_cols=315 Identities=10% Similarity=0.068 Sum_probs=166.4
Q ss_pred CCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhc-------CCHHHHHHHHHHHHHHhcCcc--cch-
Q 004960 172 TSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLAS-------GEEDVAVIAFEIFDELIESPA--PLL- 241 (721)
Q Consensus 172 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~-------~~~~~~~~a~~~l~~l~~~~~--~~~- 241 (721)
.+..-|..|...+....+......+.....+.++.+++.+.+-+.. .+.+...+|+++++.+..+.. ..+
T Consensus 5 ~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~l~ 84 (372)
T PF12231_consen 5 SDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVSTLS 84 (372)
T ss_pred CCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhhCC
Confidence 4556777787777777665544334445667777788777655543 255677899999998876531 111
Q ss_pred hhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHH
Q 004960 242 GDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAE 321 (721)
Q Consensus 242 ~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~ 321 (721)
.+...-++...+..+.++..+..+....+.++. ... .+++.....
T Consensus 85 ~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls----------------------------~Q~-------f~~~~~~~~ 129 (372)
T PF12231_consen 85 DDFASFIIDHSIESLQNPNSPKSICTHYLWCLS----------------------------DQK-------FSPKIMTSD 129 (372)
T ss_pred hHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----------------------------cCC-------CCCcccchh
Confidence 111122344444444444444333333333222 111 000000000
Q ss_pred HHHHHHHHcCccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHH
Q 004960 322 VIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFA 401 (721)
Q Consensus 322 ~l~~l~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~ 401 (721)
....+ -.++..+.+.+. +-..-...+.++..+....+..+..+.+.-++.++..+-+....+|..|..+
T Consensus 130 ~~~~l---------~~~l~~i~~~~~--s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l 198 (372)
T PF12231_consen 130 RVERL---------LAALHNIKNRFP--SKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISL 198 (372)
T ss_pred hHHHH---------HHHHHHhhccCC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 00000 001111111111 2234455677777888888888888888788888888888888899888777
Q ss_pred HHHHHhhhhHHH--H--------------HhhhhHHHHHHHhccCCChHHHHHHHHHH-HHHHHhhhhccccchHHHHHH
Q 004960 402 LGQFAEYLQPEI--V--------------SHYESVLPCILNALEDESDEVKEKSYYAL-AAFCEDMGEEILPFLDPLMGK 464 (721)
Q Consensus 402 l~~l~~~~~~~~--~--------------~~~~~~l~~l~~~l~~~~~~v~~~a~~al-~~l~~~~~~~~~~~~~~i~~~ 464 (721)
+..+...+++.. . .+.+-+.+.+.+.+.+.+..+...-+|.. ..++....-.--+++...+..
T Consensus 199 ~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v 278 (372)
T PF12231_consen 199 LLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKV 278 (372)
T ss_pred HHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHH
Confidence 776665554321 0 01122333344444442222222222322 223221112334788899999
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHHHHhhhcc---hhhHHHHHHHHHHHHhccCchh--hhhHHHHHHHHHHHH
Q 004960 465 LLAALENSPRNLQETCMSAIGSVAAAAEQAF---IPYAERVLELLKIFMVLTNDED--LRSRARATELLGLVA 532 (721)
Q Consensus 465 l~~~l~~~~~~v~~~~l~~l~~l~~~~~~~~---~~~~~~i~~~l~~~l~~~~~~~--~~~~~~~~~~l~~l~ 532 (721)
...+++++++.+|..++.|+..++.....+- .+.+..+...+...++...... ..++..++.+++.+.
T Consensus 279 ~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~ll 351 (372)
T PF12231_consen 279 PEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLL 351 (372)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhchH
Confidence 9999999999999999999999998654322 2233334433333333322211 134555555555444
No 162
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=97.62 E-value=0.098 Score=52.97 Aligned_cols=312 Identities=12% Similarity=0.106 Sum_probs=144.6
Q ss_pred CCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhc-ccccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCC
Q 004960 115 EWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQT-FRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTND 193 (721)
Q Consensus 115 ~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~-~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~ 193 (721)
.|..+++ .++.+++-....++.++..++...+.. .....+.+++.+...+....+...+..++.|+..++....-
T Consensus 102 ~~~~fl~----lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~ 177 (429)
T cd00256 102 TWEPFFN----LLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEY 177 (429)
T ss_pred chHHHHH----HHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchH
Confidence 4544444 455677777888888888887543321 12233445555666665423455666677888877664321
Q ss_pred hhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcc--cchhhhHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 004960 194 GAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPA--PLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQ 271 (721)
Q Consensus 194 ~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~ 271 (721)
...... .+.++.+++.+.... .+.+..-.++=|+.-+.-... ..+.. ..+++.+.+++.... -+++-+-++.
T Consensus 178 R~~f~~-~~~v~~L~~~L~~~~--~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~--~~~i~~l~~i~k~s~-KEKvvRv~l~ 251 (429)
T cd00256 178 RFAFVL-ADGVPTLVKLLSNAT--LGFQLQYQSIFCIWLLTFNPHAAEVLKR--LSLIQDLSDILKEST-KEKVIRIVLA 251 (429)
T ss_pred HHHHHH-ccCHHHHHHHHhhcc--ccHHHHHHHHHHHHHHhccHHHHHhhcc--ccHHHHHHHHHHhhh-hHHHHHHHHH
Confidence 111111 224555666443211 123333333333332221111 11110 234444444444332 4566677777
Q ss_pred HHHHHHHHhHhhhhhcCChHHHHH----HHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcCc-cccHhHHHHHHhhh
Q 004960 272 IISWLAKYKYNSLKKHKLVIPILQ----VMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAK-HVFPPVFEFASVSC 346 (721)
Q Consensus 272 ~l~~l~~~~~~~~~~~~~~~~il~----~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~i~~~l~~~l 346 (721)
++.++.......-.+..+...++. .++..|.... ..| .+........-..+.+...+ ..++.-...+....
T Consensus 252 ~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk---~~D-edL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~ 327 (429)
T cd00256 252 IFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRK---YDD-EDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGR 327 (429)
T ss_pred HHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCC---CCc-HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCC
Confidence 888887643211001111222222 1222333221 000 11221111111112211111 01222222222111
Q ss_pred cCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcC-CCCHhHHHHHHHHHHHHHhhhhHHHHHhhh--hHHHH
Q 004960 347 QNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALR-DPEQFVRGAASFALGQFAEYLQPEIVSHYE--SVLPC 423 (721)
Q Consensus 347 ~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~l~~ 423 (721)
-.=++.++...++. ++..+ +...--.++..+.+.+. +.+|.+...||.=+|.+++..|.. ...+. +.=..
T Consensus 328 L~WSp~H~se~FW~-----EN~~k-f~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~g-r~i~~~lg~K~~ 400 (429)
T cd00256 328 LHWSPVHKSEKFWR-----ENADR-LNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRG-KDVVEQLGGKQR 400 (429)
T ss_pred ccCCCCCCCchHHH-----HHHHH-HHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccH-HHHHHHcCcHHH
Confidence 00011122122211 11111 11112355666777774 557888899999999999998532 22221 24455
Q ss_pred HHHhccCCChHHHHHHHHHHHHHH
Q 004960 424 ILNALEDESDEVKEKSYYALAAFC 447 (721)
Q Consensus 424 l~~~l~~~~~~v~~~a~~al~~l~ 447 (721)
+++.+.+++++||..|+.|+..+.
T Consensus 401 vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 401 VMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHH
Confidence 788889999999999999999874
No 163
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.60 E-value=0.24 Score=57.00 Aligned_cols=369 Identities=14% Similarity=0.129 Sum_probs=189.6
Q ss_pred HHHHHHHHH-HHhhcCCHHHHHHHHHHHHHHHccccCCCCCcc-----hHHHHHHhcc---C-CcH--HHHHHHHHHHHH
Q 004960 77 QLVKQSLIE-SITLEHSAPVRRASANVVSIIAKYAVPAGEWPD-----LLPFLFQFSQ---S-EQE--EHREVALILFSS 144 (721)
Q Consensus 77 ~~i~~~ll~-~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~~~-----ll~~l~~~l~---~-~~~--~~~~~al~~l~~ 144 (721)
..++.+|++ .|...+|..||-..+-|++.|.+...|...+++ ++..++..+. + .++ ..+..-+..+..
T Consensus 47 ~pl~~~l~~~~~L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~ 126 (1266)
T KOG1525|consen 47 LPLADHLIKDFLLKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAK 126 (1266)
T ss_pred HHHHHHHhhHHHhcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHH
Confidence 334444443 344458999999999999999987666544432 3333322221 1 122 222233333333
Q ss_pred hhhhh----hhcccccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCH
Q 004960 145 LTETI----GQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEE 220 (721)
Q Consensus 145 i~~~~----~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~ 220 (721)
+. .. .+.-...+.++...+...+.+ +.+.--..-...+..++...+. .. ..++..++.- .+. +.+
T Consensus 127 ~k-~~l~~~l~d~~e~~~~~f~~f~d~~~~-~~~~~v~~~~~i~~~li~e~d~-v~----~e~L~~ll~~---lv~-~~~ 195 (1266)
T KOG1525|consen 127 VK-FCLLMLLEDCQELVHELFRTFFDLARK-GHPKKVFNMLDIAIMLITEEDT-VQ----SELLDVLLEN---LVK-PGR 195 (1266)
T ss_pred hH-HHheeeccchHHHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHhhcc-ch----HHHHHHHHHH---hcc-CCC
Confidence 32 11 111234456667777777766 4443333333333333333211 11 1222223322 121 223
Q ss_pred HHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhh
Q 004960 221 DVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPL 300 (721)
Q Consensus 221 ~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~ 300 (721)
+....|...=..++...+..+.+.+.+++...+-..... -...+....+++..+-...|.. +..+++.+...
T Consensus 196 ~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~--~~~~~~~~he~i~~L~~~~p~l------l~~vip~l~~e 267 (1266)
T KOG1525|consen 196 DTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSR--QSSLKIKYHELILELWRIAPQL------LLAVIPQLEFE 267 (1266)
T ss_pred CccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhcccc--ccchhhHHHHHHHHHHHhhHHH------HHHHHHHHHHH
Confidence 333333333333333333334444444443332211111 1223444445555555544433 34455555555
Q ss_pred hccCCCCCCCCCCcHHHHHHHHHHHHHHHcCc---cccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHH
Q 004960 301 LAESNEAGEDDDLAPDRAAAEVIDTMALNLAK---HVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLE 377 (721)
Q Consensus 301 l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~---~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~ 377 (721)
|...+ ...|..|...++.+....+. +..+.++......+.+.+..+|..++.....+.-+.+......
T Consensus 268 L~se~-------~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~~-- 338 (1266)
T KOG1525|consen 268 LLSEQ-------EEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKAS-- 338 (1266)
T ss_pred Hhcch-------HHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhHH--
Confidence 54433 45777777777766554432 2346667666667788888999999988888776644432221
Q ss_pred HHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhh-------
Q 004960 378 SVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDM------- 450 (721)
Q Consensus 378 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~------- 450 (721)
.+...+.....|++.++|..+.-........ -..+.+.++..+.+.+.|....||..|...|..+-...
T Consensus 339 ~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~----~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~~~~~~~ 414 (1266)
T KOG1525|consen 339 TILLALRERDLDEDVRVRTQVVIVACDVMKF----KLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKNVYCLRSAG 414 (1266)
T ss_pred HHHHHHHhhcCChhhhheeeEEEEEeehhHh----hhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 2223333333444444443332221111111 12344458888889999999999999999999888851
Q ss_pred hhccccchHHHHHHHHHhhcCCChhHH
Q 004960 451 GEEILPFLDPLMGKLLAALENSPRNLQ 477 (721)
Q Consensus 451 ~~~~~~~~~~i~~~l~~~l~~~~~~v~ 477 (721)
+..+.+-+..|-..|+.++...+...|
T Consensus 415 ~k~~t~~~swIp~kLL~~~y~~~~~~r 441 (1266)
T KOG1525|consen 415 GKEITPPFSWIPDKLLHLYYENDLDDR 441 (1266)
T ss_pred cccccccccccchhHHhhHhhccccHH
Confidence 344556666666777777776654444
No 164
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=97.60 E-value=0.0013 Score=56.95 Aligned_cols=93 Identities=22% Similarity=0.243 Sum_probs=79.6
Q ss_pred HHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhh-hhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHH---HHhhh
Q 004960 376 LESVLHIVLGALRDPEQFVRGAASFALGQFAEY-LQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAF---CEDMG 451 (721)
Q Consensus 376 l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~-~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l---~~~~~ 451 (721)
.+.++|.+++.+......-|..|...+..+.+. .++.+.+.+++++..+.++|+..++.|...++.+|..+ .+..+
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG 115 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG 115 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 457889999999877666777888888888887 66778899999999999999999999999999999999 45558
Q ss_pred hccccchHHHHHHHHHh
Q 004960 452 EEILPFLDPLMGKLLAA 468 (721)
Q Consensus 452 ~~~~~~~~~i~~~l~~~ 468 (721)
+.+.||+.++++.+.-.
T Consensus 116 ~aLvPyyrqLLp~ln~f 132 (183)
T PF10274_consen 116 EALVPYYRQLLPVLNLF 132 (183)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 89999999999877633
No 165
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.58 E-value=0.003 Score=58.68 Aligned_cols=180 Identities=17% Similarity=0.167 Sum_probs=125.0
Q ss_pred HHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccc
Q 004960 378 SVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPF 457 (721)
Q Consensus 378 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~ 457 (721)
..+...+..|.+.++...-.++..+.+++.+-+..+.+.+..++..+++.+++....|...||.+++.+.+..+..+...
T Consensus 88 ~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ 167 (334)
T KOG2933|consen 88 AALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQE 167 (334)
T ss_pred HHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555677888999999999999999999998887888899999999999999988899999999999999998888777
Q ss_pred hHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhch
Q 004960 458 LDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGR 537 (721)
Q Consensus 458 ~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~ 537 (721)
++.++..|..--...+..+++.+-.++..++...... + +++.|...++.. ..+.|..+..|+......+|-
T Consensus 168 ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~--~----~L~~L~~~~~~~---n~r~r~~a~~~~~~~v~rl~v 238 (334)
T KOG2933|consen 168 LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ--K----LLRKLIPILQHS---NPRVRAKAALCFSRCVIRLGV 238 (334)
T ss_pred HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH--H----HHHHHHHHHhhh---chhhhhhhhccccccceeccc
Confidence 8888877777666778899999999988887654321 2 333333333332 123444555554444433331
Q ss_pred h-hccCChHHHHHHHHhccCCCChhhHHHH
Q 004960 538 A-RMEPILPPFVEAAISGFGLEFSELREYT 566 (721)
Q Consensus 538 ~-~~~~~~~~i~~~l~~~l~~~~~~~~~~~ 566 (721)
. ...+++.+..+.+-+-..+.-+..++++
T Consensus 239 ~~~~~~~~~dl~~a~~~~~~d~Lp~~~~~a 268 (334)
T KOG2933|consen 239 LPVLLQGSCDLSRAAQEQGSDKLPELREAA 268 (334)
T ss_pred cchhhHhHHHHHHHHHhhhcccccccccch
Confidence 1 1222334445554444444455555444
No 166
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.57 E-value=0.025 Score=57.33 Aligned_cols=241 Identities=14% Similarity=0.043 Sum_probs=143.7
Q ss_pred chHHHHHHhcc-CCcHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhh
Q 004960 118 DLLPFLFQFSQ-SEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAE 196 (721)
Q Consensus 118 ~ll~~l~~~l~-~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~ 196 (721)
..++.+...+. +++...+..+...+...- -...+..+...+.+ .++.||.++.++|+.+-.
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~~----------~~~~~~~L~~~L~d-~~~~vr~aaa~ALg~i~~------- 115 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALLAQE----------DALDLRSVLAVLQA-GPEGLCAGIQAALGWLGG------- 115 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHhccC----------ChHHHHHHHHHhcC-CCHHHHHHHHHHHhcCCc-------
Confidence 45566666663 445555554444443221 12237777888888 888999999999874321
Q ss_pred HHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 004960 197 VVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWL 276 (721)
Q Consensus 197 ~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l 276 (721)
....+.++. .+.++++.++..++..+....... .+ .+...+++. +..+|..|+..++.+
T Consensus 116 ----~~a~~~L~~----~L~~~~p~vR~aal~al~~r~~~~-------~~----~L~~~L~d~--d~~Vra~A~raLG~l 174 (410)
T TIGR02270 116 ----RQAEPWLEP----LLAASEPPGRAIGLAALGAHRHDP-------GP----ALEAALTHE--DALVRAAALRALGEL 174 (410)
T ss_pred ----hHHHHHHHH----HhcCCChHHHHHHHHHHHhhccCh-------HH----HHHHHhcCC--CHHHHHHHHHHHHhh
Confidence 123333444 567788888888886665522211 12 222333444 788999999888776
Q ss_pred HHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcCccccHhHHHHHHhhhcCCChhhHhH
Q 004960 277 AKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREA 356 (721)
Q Consensus 277 ~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~ 356 (721)
... ...+. +...+.+.+ ..+|..|...+..++. +.....+........+..+..
T Consensus 175 ~~~--------~a~~~----L~~al~d~~-------~~VR~aA~~al~~lG~-------~~A~~~l~~~~~~~g~~~~~~ 228 (410)
T TIGR02270 175 PRR--------LSEST----LRLYLRDSD-------PEVRFAALEAGLLAGS-------RLAWGVCRRFQVLEGGPHRQR 228 (410)
T ss_pred ccc--------cchHH----HHHHHcCCC-------HHHHHHHHHHHHHcCC-------HhHHHHHHHHHhccCccHHHH
Confidence 632 11222 333333332 5788888877755542 222333333334444444444
Q ss_pred HHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHH
Q 004960 357 AVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVK 436 (721)
Q Consensus 357 al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~ 436 (721)
....++..- -+..++.+...+++++ +|..+++++|.+... ..++.|++.+.++ .++
T Consensus 229 l~~~lal~~----------~~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p----------~av~~L~~~l~d~--~~a 284 (410)
T TIGR02270 229 LLVLLAVAG----------GPDAQAWLRELLQAAA--TRREALRAVGLVGDV----------EAAPWCLEAMREP--PWA 284 (410)
T ss_pred HHHHHHhCC----------chhHHHHHHHHhcChh--hHHHHHHHHHHcCCc----------chHHHHHHHhcCc--HHH
Confidence 433333331 1266777788888765 999999999976654 5677888888776 388
Q ss_pred HHHHHHHHHHH
Q 004960 437 EKSYYALAAFC 447 (721)
Q Consensus 437 ~~a~~al~~l~ 447 (721)
..|-.++..+.
T Consensus 285 R~A~eA~~~It 295 (410)
T TIGR02270 285 RLAGEAFSLIT 295 (410)
T ss_pred HHHHHHHHHhh
Confidence 88888888775
No 167
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.57 E-value=0.00012 Score=43.09 Aligned_cols=30 Identities=47% Similarity=0.554 Sum_probs=26.8
Q ss_pred HHHHHHhhcCCCCHhHHHHHHHHHHHHHhh
Q 004960 379 VLHIVLGALRDPEQFVRGAASFALGQFAEY 408 (721)
Q Consensus 379 i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 408 (721)
++|.+++.++|+++.||.+|+++++.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 578899999999999999999999999875
No 168
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=97.53 E-value=0.2 Score=54.16 Aligned_cols=76 Identities=17% Similarity=0.256 Sum_probs=55.1
Q ss_pred HHHHHHHHHhhC-CCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcC
Q 004960 158 ADMQALLLKCLQ-DETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIES 236 (721)
Q Consensus 158 ~~l~~~l~~~l~-~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~ 236 (721)
..++..+.+.++ + ....++.+++..+.++..+... ...++..+..|+..-.+.-..+++.+++.|+++...
T Consensus 575 ~~V~~mi~Rr~~~d-~k~~v~k~a~~~l~S~l~~cD~-------~~~fe~~L~iLq~lCrd~~vsvrk~~~~Sltel~~~ 646 (1529)
T KOG0413|consen 575 KDVVYMIVRRLSTD-DKAPVKKAACSLLKSYLSYCDE-------ASKFEVVLSILQMLCRDRMVSVRKTGADSLTELMLR 646 (1529)
T ss_pred HHHHHHHHHHhccC-CCcccchhhHHHHHHHHhccch-------hhcchhHHHHHHHHhcCcchHHHHHHHHHHHHHHhh
Confidence 445556666666 5 6667999999999988887642 334555556665555666778899999999999887
Q ss_pred cccch
Q 004960 237 PAPLL 241 (721)
Q Consensus 237 ~~~~~ 241 (721)
.|..+
T Consensus 647 ~pr~~ 651 (1529)
T KOG0413|consen 647 DPRLF 651 (1529)
T ss_pred Cchhh
Confidence 77655
No 169
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.52 E-value=0.098 Score=60.05 Aligned_cols=348 Identities=14% Similarity=0.164 Sum_probs=182.9
Q ss_pred HhhHHHHHHHHH-HHhhcCCHHHHHHHHHHHHHHhcCc---ccchhhhHHHHHHHHHHhhc---CCCCChHHHHHHHHHH
Q 004960 201 REFIPSILNVSR-QCLASGEEDVAVIAFEIFDELIESP---APLLGDSVKSIVHFSLEVSS---SHNLEPNTRHQAIQII 273 (721)
Q Consensus 201 ~~~l~~ll~~l~-~~l~~~~~~~~~~a~~~l~~l~~~~---~~~~~~~~~~l~~~~~~~~~---~~~~~~~~r~~a~~~l 273 (721)
..+.|.....+. ..++..+.+++....-|+.++.... .+|-...+..++..++..+. +.. ++....+ ..++
T Consensus 44 ~~~~pl~~~l~~~~~L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~-sp~f~r~-~~ll 121 (1266)
T KOG1525|consen 44 ASLLPLADHLIKDFLLKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVE-SPYFKRY-FYLL 121 (1266)
T ss_pred HHHHHHHHHHhhHHHhcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCC-CcchhhH-HHHH
Confidence 445554444443 3567788889888877888776543 34555567777766655432 221 2222111 2233
Q ss_pred HHHHHHhHhhh-h---hcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcC--ccccHhHHHHHHhhhc
Q 004960 274 SWLAKYKYNSL-K---KHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA--KHVFPPVFEFASVSCQ 347 (721)
Q Consensus 274 ~~l~~~~~~~~-~---~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~--~~~~~~i~~~l~~~l~ 347 (721)
.++++...-.+ . .++++..++..++......-. ..+. ..++.+...+. +.+-..++..+...+-
T Consensus 122 etl~~~k~~l~~~l~d~~e~~~~~f~~f~d~~~~~~~------~~v~----~~~~i~~~li~e~d~v~~e~L~~ll~~lv 191 (1266)
T KOG1525|consen 122 ETLAKVKFCLLMLLEDCQELVHELFRTFFDLARKGHP------KKVF----NMLDIAIMLITEEDTVQSELLDVLLENLV 191 (1266)
T ss_pred HHHHHhHHHheeeccchHHHHHHHHHHHHHHHhcccc------HHHH----HHHHHHHHHHHhhccchHHHHHHHHHHhc
Confidence 33333321111 0 012334444444444432210 0000 12222222222 2233445555555555
Q ss_pred CCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHH-HHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHH
Q 004960 348 NASPKYREAAVTAIGIISEGCAEWMKEKLESVLH-IVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILN 426 (721)
Q Consensus 348 ~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~-~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ 426 (721)
++....+..|...=..++..+.+.+.+.+...+. .+...- ..-..++......+-.+-...+ ..+-.++|.|-.
T Consensus 192 ~~~~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~-s~~~~~~~~~he~i~~L~~~~p----~ll~~vip~l~~ 266 (1266)
T KOG1525|consen 192 KPGRDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYK-SRQSSLKIKYHELILELWRIAP----QLLLAVIPQLEF 266 (1266)
T ss_pred cCCCCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhcc-ccccchhhHHHHHHHHHHHhhH----HHHHHHHHHHHH
Confidence 5555555566555555555555544444333332 222111 1222233333334444333322 356678888888
Q ss_pred hccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHH
Q 004960 427 ALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELL 506 (721)
Q Consensus 427 ~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~~l 506 (721)
-|...+..+|..|...++.+...-+..+..-.+.+....+..+.+....||..++++...+....+.... -..++-.+
T Consensus 267 eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~--~~~~~~~l 344 (1266)
T KOG1525|consen 267 ELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAK--ASTILLAL 344 (1266)
T ss_pred HHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhh--HHHHHHHH
Confidence 8888888999999999999988776666666778888889999999999999999988776654322110 01111111
Q ss_pred HHHHhccCchhhhhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCChhhHHHHHHHHHHHHH
Q 004960 507 KIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAG 575 (721)
Q Consensus 507 ~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~ 575 (721)
.. ...|++.++|..+ .+..+... ..-..+.+.++..+..-+.|..+.||..|+.-+..+-+
T Consensus 345 ~~---~~~D~~~rir~~v--~i~~~~v~---~~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 345 RE---RDLDEDVRVRTQV--VIVACDVM---KFKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYK 405 (1266)
T ss_pred Hh---hcCChhhhheeeE--EEEEeehh---HhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 11 1123333333211 11111100 01112334477888888889999999999998887766
No 170
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=97.49 E-value=0.19 Score=52.80 Aligned_cols=308 Identities=13% Similarity=0.165 Sum_probs=164.1
Q ss_pred HHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHH
Q 004960 133 EHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSR 212 (721)
Q Consensus 133 ~~~~~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~ 212 (721)
..|..++.-+...+...+- ..++++......++..+...+.|.+++..+..++..........+ ..++..+
T Consensus 5 ~~R~~a~~~l~~~i~~~~~---~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R-~~fF~~I----- 75 (464)
T PF11864_consen 5 SERIKAAEELCESIQKYPL---SSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMR-AEFFRDI----- 75 (464)
T ss_pred HHHHHHHHHHHHHHHhCCc---hHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHH-HHHHHHH-----
Confidence 4455666666655554432 445666666666776645678999999999999987654212222 1122211
Q ss_pred HHhhcCCHHHHHHHHHHHHHHhcCcc---cchhhhHHHHHHHHHHhh---c------C-------C-----CCChHHHHH
Q 004960 213 QCLASGEEDVAVIAFEIFDELIESPA---PLLGDSVKSIVHFSLEVS---S------S-------H-----NLEPNTRHQ 268 (721)
Q Consensus 213 ~~l~~~~~~~~~~a~~~l~~l~~~~~---~~~~~~~~~l~~~~~~~~---~------~-------~-----~~~~~~r~~ 268 (721)
.....++....-++.|..+.+.+. .+..+..+.+..++-... . . . +.+...-..
T Consensus 76 --~~~~~~~d~~~~l~aL~~LT~~Grdi~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ 153 (464)
T PF11864_consen 76 --SDPSNDDDFDLRLEALIALTDNGRDIDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSD 153 (464)
T ss_pred --hcCCCchhHHHHHHHHHHHHcCCcCchhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHH
Confidence 112233333344444444444332 222233333333222222 0 0 0 001222334
Q ss_pred HHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHH--HcCccccHhHHHHHHhhh
Q 004960 269 AIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMAL--NLAKHVFPPVFEFASVSC 346 (721)
Q Consensus 269 a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~--~~~~~~~~~i~~~l~~~l 346 (721)
.+.++..+++.....+.. +.+..++..++......... ..-..+...++.+.. .+|+..++.++..+....
T Consensus 154 ll~~l~nviKfn~~~l~e-~~i~~lv~~i~~iC~~Ts~~------~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~ 226 (464)
T PF11864_consen 154 LLQFLVNVIKFNFNYLDE-DEISSLVDQICTICKSTSSE------DDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIV 226 (464)
T ss_pred HHHHHHHHHhcCCCCCCH-HHHHHHHHHHHHHHhccCcH------HHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHh
Confidence 556666666654332211 23555666666653333211 112456677777765 455667778888777665
Q ss_pred cCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhc--C----CCCHhHHHHHHHHHHHHHhhhhHHHHH--hhh
Q 004960 347 QNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGAL--R----DPEQFVRGAASFALGQFAEYLQPEIVS--HYE 418 (721)
Q Consensus 347 ~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l--~----d~~~~vr~~a~~~l~~l~~~~~~~~~~--~~~ 418 (721)
... .....+-.++.+++..... ...+..+...| . .++..+...|...++.+.-..+....+ .+.
T Consensus 227 ~~~--~l~~~~w~~m~nL~~S~~g------~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~ 298 (464)
T PF11864_consen 227 NSV--SLCKPSWRTMRNLLKSHLG------HSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFS 298 (464)
T ss_pred ccc--ccchhHHHHHHHHHcCccH------HHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceeccc
Confidence 444 3444455677777654211 13334444444 2 235667778888888877655322121 133
Q ss_pred h--HHHHHHHhccCCChHHHHHHHHHHHHHH-Hhhhhccc-cchHHHHHHHH
Q 004960 419 S--VLPCILNALEDESDEVKEKSYYALAAFC-EDMGEEIL-PFLDPLMGKLL 466 (721)
Q Consensus 419 ~--~l~~l~~~l~~~~~~v~~~a~~al~~l~-~~~~~~~~-~~~~~i~~~l~ 466 (721)
. +++.+...++..++.|-...+.++.+++ ...+..+. +..+.++..+.
T Consensus 299 ~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~~~~~~~l~~~~W~~~~~i~~ 350 (464)
T PF11864_consen 299 PSSVLPSLLNALKSNSPRVDYEILLLINRLLDGKYGRELSEEDWDIILDIIE 350 (464)
T ss_pred HHHHHHHHHHHHhCCCCeehHHHHHHHHHHHhHhhhhhhcccCchHHHHHHH
Confidence 4 9999999999888888888888888888 55554432 33444444443
No 171
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=97.48 E-value=0.13 Score=54.44 Aligned_cols=384 Identities=16% Similarity=0.169 Sum_probs=191.7
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHh----cCCCc---HHHHHHHHhcCC-ChhHHHHHHHHHHHhhhhhhcCCCHHHH
Q 004960 5 LELLLIQFLMPDNDARRQAEDQIKRLA----KDPQV---VPALVQHLRTAK-TPNVRQLAAVLLRKKITGHWAKLSPQLK 76 (721)
Q Consensus 5 l~~ll~~~~s~d~~~r~~A~~~L~~~~----~~p~~---~~~l~~il~~~~-~~~vr~~a~~~l~~~i~~~w~~~~~~~~ 76 (721)
+..+|..+.||+..+|++.-+.|.++. .+|+. +..|++...+++ ++-+|.++.++++..+.+ ++.+.+
T Consensus 25 L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~R----l~~~e~ 100 (501)
T PF13001_consen 25 LPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFDR----LDDEER 100 (501)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhhc----CCHHHH
Confidence 445666677999999999999997754 34654 667888887755 799999999999887654 789999
Q ss_pred HHHHHHHHHHHhhcCC--HHHHHHHHHHHHHHHccc----cCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhh---
Q 004960 77 QLVKQSLIESITLEHS--APVRRASANVVSIIAKYA----VPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTE--- 147 (721)
Q Consensus 77 ~~i~~~ll~~l~~e~~--~~vr~~~~~~l~~i~~~~----~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~--- 147 (721)
..+...+++++.+-+. ......++..+-.+.+.. .|. .|...-....+...=.+.......+.-++....
T Consensus 101 ~~llP~ll~~is~~~~~~~~~~~~~~~~f~~~~k~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~l~~ 179 (501)
T PF13001_consen 101 RELLPSLLKGISKKPKQHQDSFLRLARLFNILLKLLPDWKEPP-RGSKEDEKFRDSLGLSDFCDDVFLAPWFSKFLLLQP 179 (501)
T ss_pred HHHHHHHHHhhccCchhhhHHHHHHHHHHHHHhhcCCcccccc-ccchhhhcHHHHHhhcchHHHHHcchhhcccccccc
Confidence 9999999999874211 222222233332222211 111 122221111111100010111111111111100
Q ss_pred -----------hhhhcccc-----------------cHH------------------HHHHHHHHhhCCCCCHHHHHHHH
Q 004960 148 -----------TIGQTFRP-----------------HFA------------------DMQALLLKCLQDETSNRVRIAAL 181 (721)
Q Consensus 148 -----------~~~~~~~~-----------------~~~------------------~l~~~l~~~l~~~~~~~vr~~a~ 181 (721)
..+..+.. .+. +.+..++-+-.| ++..|...|-
T Consensus 180 ~~~~~~pgl~~~~~~~ls~~~~~r~~~~~~~~~~~~~L~~~K~~il~fL~sg~f~d~~~~~~~liAsad-~~~~V~~~ae 258 (501)
T PF13001_consen 180 NRAYACPGLSPADPPGLSLSSAKRIEGKGPTFPSRENLTERKLAILKFLASGFFPDEERFPPLLIASAD-SNSSVSDRAE 258 (501)
T ss_pred ccccCCCCCCCCCCCCCCHHhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhcCCCcHhHHhheeeEEeC-CcchHHHHHH
Confidence 00000000 000 111111111122 3344444444
Q ss_pred HHHHHhhhhcCChhhHHHHHhhHHHHHHHHH--H-----HhhcCCHHHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHH
Q 004960 182 KAIGSFLEFTNDGAEVVKFREFIPSILNVSR--Q-----CLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLE 254 (721)
Q Consensus 182 ~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~--~-----~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~ 254 (721)
..|.++....++ ..++..++.... . .....++..+...+..|.+-... ....+.+++.+..
T Consensus 259 ~~LKr~~~~~ed-------~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~A-----a~~~~~~~~i~~~ 326 (501)
T PF13001_consen 259 DLLKRLSVSLED-------PDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIA-----ATSFPNILQIVFD 326 (501)
T ss_pred HHHhhcCCCCCC-------HHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHH-----HhCCccHHHHHhc
Confidence 444444332222 223333333322 0 00012344555555555442111 1122344444444
Q ss_pred hhcCCCCChHHHHHHHHHH---HHHHHHhHhhhhhcCChHHHHHHHHhhhccCC-CCCCCCCCcHHHHHHHHHHHHHHHc
Q 004960 255 VSSSHNLEPNTRHQAIQII---SWLAKYKYNSLKKHKLVIPILQVMCPLLAESN-EAGEDDDLAPDRAAAEVIDTMALNL 330 (721)
Q Consensus 255 ~~~~~~~~~~~r~~a~~~l---~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~-~~~~~~~~~~~~~a~~~l~~l~~~~ 330 (721)
.+.........|..+++++ .+..++.+....+ .+-+.++..++|.+.... .....++...|..+-++++.++...
T Consensus 327 ~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~-~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~ 405 (501)
T PF13001_consen 327 GLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILK-LLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRA 405 (501)
T ss_pred cccCCccccccchhcchhhhcchHHhhhcCHHHHH-HHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccC
Confidence 4433433557788888988 6666554433211 123345555666663111 1122345677888999999999888
Q ss_pred Ccccc--HhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHH----HhHHHHHHHHHhhcCCCCHhHHHHHHHHHHH
Q 004960 331 AKHVF--PPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMK----EKLESVLHIVLGALRDPEQFVRGAASFALGQ 404 (721)
Q Consensus 331 ~~~~~--~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~----~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~ 404 (721)
+..+. -.++..+.+.+.++....|-+.-.+++.++......-. .........+.....+....+|..|.+....
T Consensus 406 p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~R~~avk~an~ 485 (501)
T PF13001_consen 406 PSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVRSCRYAAVKYANA 485 (501)
T ss_pred cccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Confidence 75332 24566666667777788888777788887766543221 1111112233334446677788887776665
Q ss_pred HHh
Q 004960 405 FAE 407 (721)
Q Consensus 405 l~~ 407 (721)
+..
T Consensus 486 ~fp 488 (501)
T PF13001_consen 486 CFP 488 (501)
T ss_pred hCC
Confidence 443
No 172
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.43 E-value=0.016 Score=59.88 Aligned_cols=138 Identities=17% Similarity=0.212 Sum_probs=109.7
Q ss_pred HHHhcCCChHHHHHHHHHHHHHh--cCCCc------------HHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhcCCCHH
Q 004960 9 LIQFLMPDNDARRQAEDQIKRLA--KDPQV------------VPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQ 74 (721)
Q Consensus 9 l~~~~s~d~~~r~~A~~~L~~~~--~~p~~------------~~~l~~il~~~~~~~vr~~a~~~l~~~i~~~w~~~~~~ 74 (721)
.+++..+|.++|..|..-+-++. .+|+. ...+..++ .++-|.+|..|...+.+.+..+|.-+|+.
T Consensus 180 ~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL-~d~~p~VRS~a~~gv~k~~s~fWe~iP~~ 258 (1005)
T KOG1949|consen 180 WRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLL-EDPYPMVRSTAILGVCKITSKFWEMIPPT 258 (1005)
T ss_pred HHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHh-cCCCchHHHHHHHHHHHHHHHHHHHcCHH
Confidence 44556789999999998887765 35654 23344444 45689999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhh
Q 004960 75 LKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTE 147 (721)
Q Consensus 75 ~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~ 147 (721)
....+...++..+..|+...||-.....+..++..-...+.+..++|.+-..+.++...+|.++...+..+-.
T Consensus 259 i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~ 331 (1005)
T KOG1949|consen 259 ILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKA 331 (1005)
T ss_pred HHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHh
Confidence 9999999999999988888999999999988875432223456678888888888888999988888877643
No 173
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=97.42 E-value=0.14 Score=50.07 Aligned_cols=114 Identities=14% Similarity=0.113 Sum_probs=76.1
Q ss_pred HHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhcc-----CCChHHHHHHHHHHHHHHHhhh
Q 004960 377 ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALE-----DESDEVKEKSYYALAAFCEDMG 451 (721)
Q Consensus 377 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~-----~~~~~v~~~a~~al~~l~~~~~ 451 (721)
++++..+..++.+.+......+.-++|++++.-...+.-.-.+++..++..+. +.+-+++.++++||+++.--..
T Consensus 314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~ 393 (604)
T KOG4500|consen 314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS 393 (604)
T ss_pred cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC
Confidence 45888899999999999999999999999987543332222456666655543 3456688899999999863322
Q ss_pred hccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q 004960 452 EEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAA 490 (721)
Q Consensus 452 ~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~ 490 (721)
..-.-.-.++.+.++..+....+.+.-..+..+..+...
T Consensus 394 nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~ 432 (604)
T KOG4500|consen 394 NKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDS 432 (604)
T ss_pred chhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhc
Confidence 111111135666677777777777777777666665544
No 174
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.40 E-value=0.019 Score=62.15 Aligned_cols=145 Identities=21% Similarity=0.276 Sum_probs=104.9
Q ss_pred ChhhHhHHHHHHHHHhhccHHHHHHhH-HHHHHHHHhhcCC-CCHhHHHHHHHHHHHHHhhhhHH-HHHhhhhHHHHHHH
Q 004960 350 SPKYREAAVTAIGIISEGCAEWMKEKL-ESVLHIVLGALRD-PEQFVRGAASFALGQFAEYLQPE-IVSHYESVLPCILN 426 (721)
Q Consensus 350 ~~~~r~~al~~l~~i~~~~~~~~~~~l-~~i~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~~l~~l~~ 426 (721)
+.++|.-|.+.++.+..+.+..-+..+ .+++...+..++| +.|..|.=.+-|||++-+.+... ....-....+.|..
T Consensus 570 ~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~ 649 (1387)
T KOG1517|consen 570 PPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLIL 649 (1387)
T ss_pred CHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHH
Confidence 357888899999999998654333332 4677888888888 48999999999999998776532 22223456777888
Q ss_pred hccCCChHHHHHHHHHHHHHHHhh----hh-------ccc-----cchHHHHH----HHHHhhcCCChhHHHHHHHHHHH
Q 004960 427 ALEDESDEVKEKSYYALAAFCEDM----GE-------EIL-----PFLDPLMG----KLLAALENSPRNLQETCMSAIGS 486 (721)
Q Consensus 427 ~l~~~~~~v~~~a~~al~~l~~~~----~~-------~~~-----~~~~~i~~----~l~~~l~~~~~~v~~~~l~~l~~ 486 (721)
.|.|+.++||.+|..||+.++... .+ .+. .-.+..+. .++.++++..+-+|.++..+++.
T Consensus 650 ~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~ 729 (1387)
T KOG1517|consen 650 LLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSH 729 (1387)
T ss_pred HhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHH
Confidence 899999999999999999999863 11 111 11233333 67777888888899888888887
Q ss_pred HHHHhhhc
Q 004960 487 VAAAAEQA 494 (721)
Q Consensus 487 l~~~~~~~ 494 (721)
.+......
T Consensus 730 ~~~g~~~~ 737 (1387)
T KOG1517|consen 730 FVVGYVSH 737 (1387)
T ss_pred HHHhhHHH
Confidence 76554433
No 175
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=97.39 E-value=0.0021 Score=56.37 Aligned_cols=142 Identities=23% Similarity=0.272 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHHccccCC---CCCcchHHHH------------HHhccCCcHHHHHHHHHHHHHhhhhhhhc------
Q 004960 94 PVRRASANVVSIIAKYAVPA---GEWPDLLPFL------------FQFSQSEQEEHREVALILFSSLTETIGQT------ 152 (721)
Q Consensus 94 ~vr~~~~~~l~~i~~~~~~~---~~~~~ll~~l------------~~~l~~~~~~~~~~al~~l~~i~~~~~~~------ 152 (721)
++|..+..++..+++...++ ++|+.++|.- .-.+.+++++.|.+|+.++..+.++....
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 36888888999888763232 5788887765 22345778899999999999999764321
Q ss_pred -------cccc-------HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcC
Q 004960 153 -------FRPH-------FADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASG 218 (721)
Q Consensus 153 -------~~~~-------~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~ 218 (721)
|.++ +-++-..+...++.+.+..+....++|+..++...+=. .- -.++++.++..+...+.+.
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~--rL-~~~ll~~~v~~v~~~l~~~ 157 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYH--RL-PPGLLTEVVTQVRPLLRHR 157 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChh--hc-CHhHHHHHHHHHHHHHhcC
Confidence 1122 23334556667777678888889999999988765321 11 1568888888888888888
Q ss_pred CHHHHHHHHHHHHHHhcCcc
Q 004960 219 EEDVAVIAFEIFDELIESPA 238 (721)
Q Consensus 219 ~~~~~~~a~~~l~~l~~~~~ 238 (721)
|.+++..++.+++.+....+
T Consensus 158 d~~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 158 DPNVRVAALSCLGALLSVQP 177 (182)
T ss_pred CCcHHHHHHHHHHHHHcCCC
Confidence 99999999999998887554
No 176
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=97.39 E-value=0.0023 Score=56.09 Aligned_cols=139 Identities=21% Similarity=0.251 Sum_probs=95.7
Q ss_pred hHhHHHHHHHHHhhc-cHHHHHHhHHHHHH------------HHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHH------
Q 004960 353 YREAAVTAIGIISEG-CAEWMKEKLESVLH------------IVLGALRDPEQFVRGAASFALGQFAEYLQPEI------ 413 (721)
Q Consensus 353 ~r~~al~~l~~i~~~-~~~~~~~~l~~i~~------------~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~------ 413 (721)
.|.+|+.+++.++.. -++.+..|.+.++| .+.-.+.|+++.||.+|+.++..+.+..++.+
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 567777777777776 33444444444333 23344579999999999999999987654321
Q ss_pred ----------H----HhhhhHHHHHHHhccCC-ChHHHHHHHHHHHHHHHhhhh-ccc-cchHHHHHHHHHhhcCCChhH
Q 004960 414 ----------V----SHYESVLPCILNALEDE-SDEVKEKSYYALAAFCEDMGE-EIL-PFLDPLMGKLLAALENSPRNL 476 (721)
Q Consensus 414 ----------~----~~~~~~l~~l~~~l~~~-~~~v~~~a~~al~~l~~~~~~-~~~-~~~~~i~~~l~~~l~~~~~~v 476 (721)
. ..+.++=..|+..++.+ +..+....++++..+++..+- .+. .++..++..+...+.+.+.++
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v 161 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV 161 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence 1 11222333445555544 456778889999999988752 333 467888888999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 004960 477 QETCMSAIGSVAAAA 491 (721)
Q Consensus 477 ~~~~l~~l~~l~~~~ 491 (721)
+..++.|++.+....
T Consensus 162 ~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 162 RVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999999887653
No 177
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=97.34 E-value=0.3 Score=51.75 Aligned_cols=177 Identities=15% Similarity=0.199 Sum_probs=113.8
Q ss_pred CcHHHHHHHHHHHHHHHcCc-cccHhHHHHHH--hhh-----cCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHH
Q 004960 313 LAPDRAAAEVIDTMALNLAK-HVFPPVFEFAS--VSC-----QNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVL 384 (721)
Q Consensus 313 ~~~~~~a~~~l~~l~~~~~~-~~~~~i~~~l~--~~l-----~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~ 384 (721)
.++...|...+..+...+.+ .++..++.... ..- .-.++..|..-+..+..-.. -....+.++..+.
T Consensus 251 ~~V~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~-----Aa~~~~~~~~i~~ 325 (501)
T PF13001_consen 251 SSVSDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVI-----AATSFPNILQIVF 325 (501)
T ss_pred chHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHH-----HHhCCccHHHHHh
Confidence 45666677777776655443 23344444333 100 01234444444443333211 1224567888888
Q ss_pred hhcCCC--CHhHHHHHHHHH---HHHHhhhhHHHHHhh-hhHHHHHHHhcc--------CCChHHHHHHHHHHHHHHHhh
Q 004960 385 GALRDP--EQFVRGAASFAL---GQFAEYLQPEIVSHY-ESVLPCILNALE--------DESDEVKEKSYYALAAFCEDM 450 (721)
Q Consensus 385 ~~l~d~--~~~vr~~a~~~l---~~l~~~~~~~~~~~~-~~~l~~l~~~l~--------~~~~~v~~~a~~al~~l~~~~ 450 (721)
.++.++ +.++|..++..+ ......+++.....+ +.++..+.+.++ ..+...|..+..+|+.++...
T Consensus 326 ~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~ 405 (501)
T PF13001_consen 326 DGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRA 405 (501)
T ss_pred ccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccC
Confidence 899877 889999999999 888877776544433 344444555552 224568999999999999988
Q ss_pred hhccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhcc
Q 004960 451 GEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAF 495 (721)
Q Consensus 451 ~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~~~ 495 (721)
+..+..- -.++..|+..+.+..++++..+-+|++.++......-
T Consensus 406 p~l~~~d-~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~ 449 (501)
T PF13001_consen 406 PSLFSKD-LSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLP 449 (501)
T ss_pred ccccccc-HHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccc
Confidence 7654222 4677778888888889999999999999998876543
No 178
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=97.25 E-value=0.12 Score=55.05 Aligned_cols=327 Identities=14% Similarity=0.151 Sum_probs=171.6
Q ss_pred Ccch-HHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccccHHHH--HHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcC
Q 004960 116 WPDL-LPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADM--QALLLKCLQDETSNRVRIAALKAIGSFLEFTN 192 (721)
Q Consensus 116 ~~~l-l~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~l--~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~ 192 (721)
|.+. +|..+..+.+.++..+-.|..-+..++....+ ....+.++ ++.+..++.+ .+.+|+..|+.+|.+++-...
T Consensus 230 w~d~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~-ik~~vrqlggI~kLv~Ll~~-~~~evq~~acgaLRNLvf~~~ 307 (717)
T KOG1048|consen 230 WRDPTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNK-IKSRVRQLGGIPKLVALLDH-RNDEVQRQACGALRNLVFGKS 307 (717)
T ss_pred ccccccHHHHHHHhccChhhhHHHHHHHHHHHhhhHH-HHHHHHHhccHHHHHHHhcC-CcHHHHHHHHHHHHhhhcccC
Confidence 6443 77778888888887777777777777744322 12233333 5667778878 899999999999999876543
Q ss_pred C--hhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcc---cchhhhHHHHHHHHHHhhc---CCCCC--
Q 004960 193 D--GAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPA---PLLGDSVKSIVHFSLEVSS---SHNLE-- 262 (721)
Q Consensus 193 ~--~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~---~~~~~~~~~l~~~~~~~~~---~~~~~-- 262 (721)
. +.......+-+|.++..+.+. .|.++++.+-..|..+.+... ..+..-+..+-...+...+ +++..
T Consensus 308 ~~~NKlai~~~~Gv~~l~~~Lr~t---~D~ev~e~iTg~LWNLSS~D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~ 384 (717)
T KOG1048|consen 308 TDSNKLAIKELNGVPTLVRLLRHT---QDDEVRELITGILWNLSSNDALKMLIITSALSTLTDNVIIPHSGWEEEPAPRK 384 (717)
T ss_pred CcccchhhhhcCChHHHHHHHHhh---cchHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhhcccccccCCCCcccc
Confidence 3 222223355678888866543 577888888777777766521 1111111111111110000 11111
Q ss_pred ---hHHHHHHHHHHHHHHHHhHhh---hhh-cCChHHHHHHHH--------------------hhhccCCCCCC------
Q 004960 263 ---PNTRHQAIQIISWLAKYKYNS---LKK-HKLVIPILQVMC--------------------PLLAESNEAGE------ 309 (721)
Q Consensus 263 ---~~~r~~a~~~l~~l~~~~~~~---~~~-~~~~~~il~~l~--------------------~~l~~~~~~~~------ 309 (721)
.++-..+-.+|.++....... ++. ...+..++..+- ..+++.-+.+-
T Consensus 385 ~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~ 464 (717)
T KOG1048|consen 385 AEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQ 464 (717)
T ss_pred cccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhh
Confidence 222333333444333211111 110 011111111111 11111110000
Q ss_pred -----C---CCCcHHHHHHHHHHHHHHH---------cC--------cc--ccHhHHHHHHhhh-cCCChhhHhHHHHHH
Q 004960 310 -----D---DDLAPDRAAAEVIDTMALN---------LA--------KH--VFPPVFEFASVSC-QNASPKYREAAVTAI 361 (721)
Q Consensus 310 -----~---~~~~~~~~a~~~l~~l~~~---------~~--------~~--~~~~i~~~l~~~l-~~~~~~~r~~al~~l 361 (721)
+ ....+. ....|+..-... ++ .+ +=+.++..-..++ .+.+...-+++.-++
T Consensus 465 ~~~~~~~~~~~~~~~-~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaL 543 (717)
T KOG1048|consen 465 VLANIARLPGVGPPA-ESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGAL 543 (717)
T ss_pred HhhcccccccCCCcc-cccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhH
Confidence 0 000000 011111111111 01 01 1133443322222 455667777777777
Q ss_pred HHHhhccH---HHHHHhH---HHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhh-hhHHHHHHHhccCCC--
Q 004960 362 GIISEGCA---EWMKEKL---ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY-ESVLPCILNALEDES-- 432 (721)
Q Consensus 362 ~~i~~~~~---~~~~~~l---~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~l~~l~~~l~~~~-- 432 (721)
.++.-+.. ..+...+ ++.+|.+++++..++..|..+++-+|.+++...- .++.+ ...++.|++.|.+..
T Consensus 544 QNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~r--nk~ligk~a~~~lv~~Lp~~~~~ 621 (717)
T KOG1048|consen 544 QNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIR--NKELIGKYAIPDLVRCLPGSGPS 621 (717)
T ss_pred hhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCch--hhhhhhcchHHHHHHhCcCCCCC
Confidence 77765532 3333222 4667899999999999999999999999998743 23333 578888888887654
Q ss_pred ----hHHHHHHHHHHHHHHHhh
Q 004960 433 ----DEVKEKSYYALAAFCEDM 450 (721)
Q Consensus 433 ----~~v~~~a~~al~~l~~~~ 450 (721)
.++-..+|..|.+++...
T Consensus 622 ~~~sedtv~~vc~tl~niv~~~ 643 (717)
T KOG1048|consen 622 TSLSEDTVRAVCHTLNNIVRKN 643 (717)
T ss_pred cCchHHHHHHHHHhHHHHHHHh
Confidence 357778899999988544
No 179
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=97.25 E-value=0.071 Score=52.34 Aligned_cols=169 Identities=20% Similarity=0.161 Sum_probs=104.8
Q ss_pred hHHHH-HHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHH
Q 004960 337 PVFEF-ASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVS 415 (721)
Q Consensus 337 ~i~~~-l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 415 (721)
.+++. +...+.+.+...|+.|+.++|-.+--..+....+ ++.+...++..++.|+..|++++..+....+.....
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~----l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~ 101 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEH----LPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFD 101 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHH----HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhcc
Confidence 44433 3467888999999999999998876544443333 445555555559999999999999998877644332
Q ss_pred h---------hhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCC----ChhHHHHHHH
Q 004960 416 H---------YESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENS----PRNLQETCMS 482 (721)
Q Consensus 416 ~---------~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~----~~~v~~~~l~ 482 (721)
. ...++..+.+.+.+.++.++..++.++.++.-...-.- .+.++..|+-..-++ +..+|.-.-.
T Consensus 102 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~ 178 (298)
T PF12719_consen 102 SESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSV 178 (298)
T ss_pred chhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHH
Confidence 2 24677888888888888999999999998875542111 245555555554443 2333332222
Q ss_pred HHHHHHHHhhhcchhhHHHHHHHHHHHHhc
Q 004960 483 AIGSVAAAAEQAFIPYAERVLELLKIFMVL 512 (721)
Q Consensus 483 ~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~ 512 (721)
.+...+.....+-......++|.+..+...
T Consensus 179 Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 179 FFPVYASSSPENQERLAEAFLPTLRTLSNA 208 (298)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHhC
Confidence 222233222222233344455666665544
No 180
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=97.22 E-value=0.0043 Score=53.80 Aligned_cols=143 Identities=15% Similarity=0.248 Sum_probs=96.0
Q ss_pred cHhHHHHHHhhhcCC-ChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcC-----CCCHhHHHHHHHHHHHHHhh
Q 004960 335 FPPVFEFASVSCQNA-SPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALR-----DPEQFVRGAASFALGQFAEY 408 (721)
Q Consensus 335 ~~~i~~~l~~~l~~~-~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~-----d~~~~vr~~a~~~l~~l~~~ 408 (721)
.|.+++.+...++.+ +|..|..++.++|.+..--|...+. +..... +.+......... ...
T Consensus 8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~--------~~~~~~~~~~~~~~~~~~~~~l~-----~~~ 74 (160)
T PF11865_consen 8 YPELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKS--------IQKSLDSKSSENSNDESTDISLP-----MMG 74 (160)
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhc--------ccccCCccccccccccchhhHHh-----hcc
Confidence 467777777777644 6999999999999998654432221 111111 111122221111 111
Q ss_pred hhHHHHHhh-hhHHHHHHHhccCCCh-HHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 004960 409 LQPEIVSHY-ESVLPCILNALEDESD-EVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGS 486 (721)
Q Consensus 409 ~~~~~~~~~-~~~l~~l~~~l~~~~~-~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~ 486 (721)
..+...+|+ .-++..|++.|+|+.- .-+..+..++..+++..+....||++.+++.+.+.+.+.+...++..+.-++.
T Consensus 75 ~~~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~ 154 (160)
T PF11865_consen 75 ISPSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLAD 154 (160)
T ss_pred CCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 111223444 4678888999998853 34567899999999888888899999999999999998877999999888887
Q ss_pred HHHH
Q 004960 487 VAAA 490 (721)
Q Consensus 487 l~~~ 490 (721)
++..
T Consensus 155 lv~i 158 (160)
T PF11865_consen 155 LVSI 158 (160)
T ss_pred HHHH
Confidence 7764
No 181
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.23 Score=47.87 Aligned_cols=176 Identities=16% Similarity=0.183 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHHHHcCc--cccH-hHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHH-HHHHHHHhhcC-C
Q 004960 315 PDRAAAEVIDTMALNLAK--HVFP-PVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLE-SVLHIVLGALR-D 389 (721)
Q Consensus 315 ~~~~a~~~l~~l~~~~~~--~~~~-~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~-~i~~~l~~~l~-d 389 (721)
-+..|.+-+..++..+.. .+.. ..+..+..++++.+...|+.|.+.+|.++.+.|..-...++ ..++.++..++ +
T Consensus 99 ~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~ 178 (342)
T KOG2160|consen 99 DKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSD 178 (342)
T ss_pred HHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccC
Confidence 345566666666665542 1110 11222333788999999999999999999998765444332 24566666665 5
Q ss_pred CCHhHHHHHHHHHHHHHhhhhHHHHHhhh-hHHHHHHHhccC--CChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHH
Q 004960 390 PEQFVRGAASFALGQFAEYLQPEIVSHYE-SVLPCILNALED--ESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLL 466 (721)
Q Consensus 390 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~~l~~l~~~l~~--~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~ 466 (721)
.+..+|..|+.+++.+....++....++. .-...|...+++ .+.+.+..++..+..++......-.......++...
T Consensus 179 ~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~ 258 (342)
T KOG2160|consen 179 DPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVL 258 (342)
T ss_pred CCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHH
Confidence 67789999999999999998876665542 336677777777 456778889999999988775433222222333333
Q ss_pred Hhh-cCCChhHHHHHHHHHHHHHHH
Q 004960 467 AAL-ENSPRNLQETCMSAIGSVAAA 490 (721)
Q Consensus 467 ~~l-~~~~~~v~~~~l~~l~~l~~~ 490 (721)
..+ ..-+..+++.++.++-.....
T Consensus 259 ~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 259 ENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred HHHhhccchhhhHHHHHHHHHHHHH
Confidence 322 333567777777776655544
No 182
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=97.18 E-value=0.0098 Score=60.82 Aligned_cols=234 Identities=17% Similarity=0.183 Sum_probs=146.3
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHh-cCCCcH----HHHHHHHh----cCCChhHHHHHHHHHHHhhhhhhcCCCHH
Q 004960 4 SLELLLIQFLMPDNDARRQAEDQIKRLA-KDPQVV----PALVQHLR----TAKTPNVRQLAAVLLRKKITGHWAKLSPQ 74 (721)
Q Consensus 4 ~l~~ll~~~~s~d~~~r~~A~~~L~~~~-~~p~~~----~~l~~il~----~~~~~~vr~~a~~~l~~~i~~~w~~~~~~ 74 (721)
-+..++..+.|+|+.+|.....-|-.+. +-++.- ..+..++. ......--.-...++...++..-..+.++
T Consensus 134 fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~e 213 (409)
T PF01603_consen 134 FIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKEE 213 (409)
T ss_dssp HHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHH
Confidence 4677888889999999999999997755 344322 22222222 22223222333455555565544456788
Q ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhh-hhcc
Q 004960 75 LKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETI-GQTF 153 (721)
Q Consensus 75 ~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~-~~~~ 153 (721)
.+..+.+.++.+.....-......+..++..+..++.. .-..++..++..--..+..-....+.-+..+++.. ++.+
T Consensus 214 h~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~--l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f 291 (409)
T PF01603_consen 214 HKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPS--LAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEF 291 (409)
T ss_dssp HHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GG--GHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch--hHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHH
Confidence 88888888888887533345578888888888876631 33345555555444444444456777778887765 3556
Q ss_pred cccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHH--hhhhcCChhhHHHHHhhHHHHHHHHHHHhhcC-CHHHHHHHHHHH
Q 004960 154 RPHFADMQALLLKCLQDETSNRVRIAALKAIGS--FLEFTNDGAEVVKFREFIPSILNVSRQCLASG-EEDVAVIAFEIF 230 (721)
Q Consensus 154 ~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~--l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~-~~~~~~~a~~~l 230 (721)
......++..+.+++++ ++.+|...|+..+.+ ++....+. ...++|.++..+.+..... +..++..+..++
T Consensus 292 ~~i~~~lf~~la~ci~S-~h~qVAErAl~~w~n~~~~~li~~~-----~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl 365 (409)
T PF01603_consen 292 QKIMVPLFKRLAKCISS-PHFQVAERALYFWNNEYFLSLISQN-----SRVILPIIFPALYRNSKNHWNQTVRNLAQNVL 365 (409)
T ss_dssp HHHHHHHHHHHHHHHTS-SSHHHHHHHHGGGGSHHHHHHHHCT-----HHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHCCHHHHHHHHhC-----hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 67778888999999999 999999988877643 23332221 2446666666554433221 567899999999
Q ss_pred HHHhcCcccchhhhH
Q 004960 231 DELIESPAPLLGDSV 245 (721)
Q Consensus 231 ~~l~~~~~~~~~~~~ 245 (721)
.-+.+..+..+....
T Consensus 366 ~~l~~~d~~lf~~~~ 380 (409)
T PF01603_consen 366 KILMEMDPKLFDKCA 380 (409)
T ss_dssp HHHHTTSHHHHHHHH
T ss_pred HHHHHhCHHHHHHHH
Confidence 999888776665543
No 183
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=97.17 E-value=0.11 Score=50.91 Aligned_cols=131 Identities=22% Similarity=0.152 Sum_probs=88.6
Q ss_pred chHHHHH-HhccCCcHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChh-
Q 004960 118 DLLPFLF-QFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGA- 195 (721)
Q Consensus 118 ~ll~~l~-~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~- 195 (721)
+++..++ ..+++.++..|..|+.|+|-.+-... ....+-++.+.+.++. .+..+|..|++++..++..++...
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~----~~a~~~l~l~~~~~~~-~~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK----ELAKEHLPLFLQALQK-DDEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh----HHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHcCchhc
Confidence 5565554 77889999999999999998874433 2446667777888866 689999999999999876653221
Q ss_pred hHHH---HHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcccch-hhhHHHHHHHHH
Q 004960 196 EVVK---FREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLL-GDSVKSIVHFSL 253 (721)
Q Consensus 196 ~~~~---~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~l~~~~~ 253 (721)
+... .......++..+...+.+.+++++..+++.+.++.-...-.- ...+..++-.++
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF 162 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYF 162 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 0000 012234566666667787889999999999999876543323 344444444333
No 184
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.17 E-value=0.22 Score=54.11 Aligned_cols=97 Identities=13% Similarity=0.108 Sum_probs=78.1
Q ss_pred cHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhcc---HHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhH
Q 004960 335 FPPVFEFASVSCQNASPKYREAAVTAIGIISEGC---AEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQP 411 (721)
Q Consensus 335 ~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~---~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 411 (721)
+..++......+.+++-..|-.++.++.....-+ ++.+.|.+....|.++..+.+.+|.+...|+.++..++...++
T Consensus 801 v~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgD 880 (1014)
T KOG4524|consen 801 VLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGD 880 (1014)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhh
Confidence 4556777777889999999999998887765443 3566777888899999999999999999999999999999877
Q ss_pred HHH-HhhhhHHHHHHHhccCC
Q 004960 412 EIV-SHYESVLPCILNALEDE 431 (721)
Q Consensus 412 ~~~-~~~~~~l~~l~~~l~~~ 431 (721)
-+. ++.++++|.+-..+++.
T Consensus 881 Fv~sR~l~dvlP~l~~~~~~~ 901 (1014)
T KOG4524|consen 881 FVASRFLEDVLPWLKHLCQDS 901 (1014)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555 46788888887666654
No 185
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=97.14 E-value=0.37 Score=52.25 Aligned_cols=108 Identities=19% Similarity=0.231 Sum_probs=74.6
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccccHH
Q 004960 79 VKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFA 158 (721)
Q Consensus 79 i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~ 158 (721)
+...+...+..+....++..+++.+..+-.+.-..+.+++.+-.|..++.+.-...|..++..|+.+....+..+ ....
T Consensus 577 V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~fe~~L~iLq~lCrd~~vsvrk~~~~Sltel~~~~pr~~-~~~~ 655 (1529)
T KOG0413|consen 577 VVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASKFEVVLSILQMLCRDRMVSVRKTGADSLTELMLRDPRLF-SLSS 655 (1529)
T ss_pred HHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhcchhHHHHHHHHhcCcchHHHHHHHHHHHHHHhhCchhh-hhhH
Confidence 334455555555667788888888877765433335677778888888888878888899999988876554433 3345
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHHHHhh
Q 004960 159 DMQALLLKCLQDETSNRVRIAALKAIGSFL 188 (721)
Q Consensus 159 ~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~ 188 (721)
..+..++..++| ....+...|...+.++.
T Consensus 656 ~wl~~li~~~~d-~es~v~e~a~~~i~k~l 684 (1529)
T KOG0413|consen 656 KWLHTLISMLND-TESDVTEHARKLIMKVL 684 (1529)
T ss_pred HHHHHHHHHHhc-cHHHHHHHHHHHHHHHH
Confidence 555666667777 77778888888776654
No 186
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=97.04 E-value=0.0081 Score=52.13 Aligned_cols=147 Identities=17% Similarity=0.190 Sum_probs=89.6
Q ss_pred HHHHHHHHHhhcC-CCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhcc
Q 004960 376 LESVLHIVLGALR-DPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEI 454 (721)
Q Consensus 376 l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~ 454 (721)
.|++++.++..++ +.++.+|..+++++|.++---|-.... ...-.+.- .-.+.+........ .........
T Consensus 8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~-~~~~~~~~--~~~~~~~~~~~~~l-----~~~~~~~~~ 79 (160)
T PF11865_consen 8 YPELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKS-IQKSLDSK--SSENSNDESTDISL-----PMMGISPSS 79 (160)
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhc-ccccCCcc--ccccccccchhhHH-----hhccCCCch
Confidence 4788888888887 457999999999999987664432221 10000000 00011111111111 111111122
Q ss_pred ccc-hHHHHHHHHHhhcCCC-hhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHH
Q 004960 455 LPF-LDPLMGKLLAALENSP-RNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVA 532 (721)
Q Consensus 455 ~~~-~~~i~~~l~~~l~~~~-~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~ 532 (721)
..| ....+..|.+.++++. ..-+..++.++..+....|....+|+++++|.+...+...++ ..++..+.-++.+.
T Consensus 80 ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~---~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 80 EEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPD---SLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCH---HHHHHHHHHHHHHH
Confidence 333 3456678888888875 344567888988898888988899999999999999986533 45555666666555
Q ss_pred H
Q 004960 533 E 533 (721)
Q Consensus 533 ~ 533 (721)
.
T Consensus 157 ~ 157 (160)
T PF11865_consen 157 S 157 (160)
T ss_pred H
Confidence 3
No 187
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=97.03 E-value=0.011 Score=47.15 Aligned_cols=95 Identities=18% Similarity=0.252 Sum_probs=74.3
Q ss_pred HHhhhhHHHHHHHhccC----CChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q 004960 414 VSHYESVLPCILNALED----ESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAA 489 (721)
Q Consensus 414 ~~~~~~~l~~l~~~l~~----~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~ 489 (721)
.+++=+++..+-+.++| .+..-|..+..+++.+++..++.+.++.++++..|...+..+ +++..+++|+..++.
T Consensus 6 ~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~ 83 (107)
T PF08064_consen 6 QPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIK 83 (107)
T ss_pred HHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHH
Confidence 34455556666666665 345578999999999999778888888889888888887765 889999999999999
Q ss_pred Hhh-hcchhhHHHHHHHHHHHH
Q 004960 490 AAE-QAFIPYAERVLELLKIFM 510 (721)
Q Consensus 490 ~~~-~~~~~~~~~i~~~l~~~l 510 (721)
..+ +++.+++++++-.+...+
T Consensus 84 ~L~~~~l~~ll~~~~~~l~~~~ 105 (107)
T PF08064_consen 84 TLDEEDLGPLLDQIFAILLPLW 105 (107)
T ss_pred HCCHHHHHHHHHHHHHHHHHhc
Confidence 887 667788888777666554
No 188
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.02 E-value=0.58 Score=49.17 Aligned_cols=168 Identities=22% Similarity=0.191 Sum_probs=106.6
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHhcC----C-CcHHHHHHHHh---cCCChhHHHHHHHHHHHhhhhhhcCCCHH
Q 004960 3 QSLELLLIQFLMPDNDARRQAEDQIKRLAKD----P-QVVPALVQHLR---TAKTPNVRQLAAVLLRKKITGHWAKLSPQ 74 (721)
Q Consensus 3 ~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~----p-~~~~~l~~il~---~~~~~~vr~~a~~~l~~~i~~~w~~~~~~ 74 (721)
.-+.++|...-++|..+|...-+-|..+... | +....+..-+. .+..|.||..|+..|.+.=. -+.+
T Consensus 85 ~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~-----d~~d 159 (892)
T KOG2025|consen 85 GTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQG-----DPKD 159 (892)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhc-----CCCC
Confidence 3467788888889999999988888776652 2 33333333332 24578899999888876521 2333
Q ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHH-HHHHHhhhhhhhcc
Q 004960 75 LKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVAL-ILFSSLTETIGQTF 153 (721)
Q Consensus 75 ~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al-~~l~~i~~~~~~~~ 153 (721)
..-.+.+.+...+.+||++.||+.+-..++ .-+.-+|.+.+...+-+...|..+. .++..+ ...
T Consensus 160 ee~~v~n~l~~liqnDpS~EVRRaaLsnI~----------vdnsTlp~IveRarDV~~anRrlvY~r~lpki-d~r---- 224 (892)
T KOG2025|consen 160 EECPVVNLLKDLIQNDPSDEVRRAALSNIS----------VDNSTLPCIVERARDVSGANRRLVYERCLPKI-DLR---- 224 (892)
T ss_pred CcccHHHHHHHHHhcCCcHHHHHHHHHhhc----------cCcccchhHHHHhhhhhHHHHHHHHHHhhhhh-hhh----
Confidence 445667777777888889999987655543 2234567777777766555554332 233333 111
Q ss_pred cccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHH-hhhhc
Q 004960 154 RPHFADMQALLLKCLQDETSNRVRIAALKAIGS-FLEFT 191 (721)
Q Consensus 154 ~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~-l~~~~ 191 (721)
..-++.-+.++..+++| .+..|+.++...+.. ++++.
T Consensus 225 ~lsi~krv~LlewgLnD-Re~sVk~A~~d~il~~Wl~~~ 262 (892)
T KOG2025|consen 225 SLSIDKRVLLLEWGLND-REFSVKGALVDAILSGWLRFS 262 (892)
T ss_pred hhhHHHHHHHHHHhhhh-hhhHHHHHHHHHHHHHHhhhc
Confidence 11234566778888988 888899888877654 44443
No 189
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=97.01 E-value=0.021 Score=55.26 Aligned_cols=165 Identities=14% Similarity=0.189 Sum_probs=113.5
Q ss_pred CCChhhHhHH-HHHHHHHhh-cc-HHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHH----HH--hhh
Q 004960 348 NASPKYREAA-VTAIGIISE-GC-AEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEI----VS--HYE 418 (721)
Q Consensus 348 ~~~~~~r~~a-l~~l~~i~~-~~-~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~----~~--~~~ 418 (721)
.+.|+...+. ...+..+.. .. ...+..+.+-++|.++..++|.++.+|..++.++..+....+... .. ..+
T Consensus 86 ~~~WK~~~~~~~~~l~w~v~~~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~ 165 (282)
T PF10521_consen 86 RQPWKSNPGLASHVLSWIVLSQLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFS 165 (282)
T ss_pred cCCcccCCcccHHHHHHHHHhcCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHH
Confidence 3456655532 234444443 33 356778899999999999999999999999999999999776544 22 233
Q ss_pred hHHHHHHHhcc--------CCChHHHHHHHHHHHHHHHhhh-h---ccccchHHHH-HHHHHhhcCC----ChhHHHHHH
Q 004960 419 SVLPCILNALE--------DESDEVKEKSYYALAAFCEDMG-E---EILPFLDPLM-GKLLAALENS----PRNLQETCM 481 (721)
Q Consensus 419 ~~l~~l~~~l~--------~~~~~v~~~a~~al~~l~~~~~-~---~~~~~~~~i~-~~l~~~l~~~----~~~v~~~~l 481 (721)
-+-+++...+. +....+-..+..++..++.... . .-...+..++ +.++..+... .+.++...+
T Consensus 166 v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll 245 (282)
T PF10521_consen 166 VFEDALFPCLYYLPPITPEDESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLL 245 (282)
T ss_pred HHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHH
Confidence 34444555554 3445677888889988877641 1 1112233333 3244443332 378889999
Q ss_pred HHHHHHHHHhhhcchhhHHHHHHHHHHHHhc
Q 004960 482 SAIGSVAAAAEQAFIPYAERVLELLKIFMVL 512 (721)
Q Consensus 482 ~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~ 512 (721)
..+..++..+|-....|+..+++.+.+.++.
T Consensus 246 ~~l~~~i~~lGi~~~~hL~rii~~l~~~l~n 276 (282)
T PF10521_consen 246 QQLPPIIDELGISSVKHLQRIIPVLSQILEN 276 (282)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999998754
No 190
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=96.94 E-value=0.0075 Score=47.64 Aligned_cols=97 Identities=11% Similarity=0.189 Sum_probs=76.8
Q ss_pred cccchHHHHHHHHHhhcCCC----hhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHH
Q 004960 454 ILPFLDPLMGKLLAALENSP----RNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLG 529 (721)
Q Consensus 454 ~~~~~~~i~~~l~~~l~~~~----~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~ 529 (721)
+.+++-++++.+...+.+.+ ..-|..++.+++.++...|+....+.++++-.|...++. + +++..+++|..
T Consensus 5 L~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~---~--eL~~~al~~W~ 79 (107)
T smart00802 5 LKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEI---P--ELRSLALRCWH 79 (107)
T ss_pred HHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc---h--hHHHHHHHHHH
Confidence 44566677777777777654 244889999999999999988888999999888888743 2 47889999999
Q ss_pred HHHHhhchhhccCChHHHHHHHHhcc
Q 004960 530 LVAESVGRARMEPILPPFVEAAISGF 555 (721)
Q Consensus 530 ~l~~~~~~~~~~~~~~~i~~~l~~~l 555 (721)
.+...+..+...+.+++++-.++..+
T Consensus 80 ~~i~~L~~~~l~~ll~~~~~~i~~~~ 105 (107)
T smart00802 80 VLIKTLKEEELGPLLDQIFAAILPLW 105 (107)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHhc
Confidence 99999987777777777777766654
No 191
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.017 Score=60.14 Aligned_cols=152 Identities=16% Similarity=0.188 Sum_probs=106.4
Q ss_pred HHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhh-cCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhh
Q 004960 341 FASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGA-LRDPEQFVRGAASFALGQFAEYLQPEIVSHYES 419 (721)
Q Consensus 341 ~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~-l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 419 (721)
.+.+.+.+.++-.|.+++..++..-.+.+. ...+..+++. .+|.|..||++|.-+||-++-.-+ .
T Consensus 523 lI~el~~dkdpilR~~Gm~t~alAy~GTgn------nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp--------~ 588 (929)
T KOG2062|consen 523 LIKELLRDKDPILRYGGMYTLALAYVGTGN------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP--------E 588 (929)
T ss_pred HHHHHhcCCchhhhhhhHHHHHHHHhccCc------hhhHHHhhcccccccchHHHHHHHHHheeeEecCh--------h
Confidence 455566677888888887766554333221 1344444444 689999999999999998776544 3
Q ss_pred HHHHHHHhccC-CChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhcchhh
Q 004960 420 VLPCILNALED-ESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPY 498 (721)
Q Consensus 420 ~l~~l~~~l~~-~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~~~~~~ 498 (721)
.+|..++.|.+ -++.||-.++.+|+-.|...+. ...+..|-++..++...||..|+-+++.+.-...+...|-
T Consensus 589 ~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~------~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pk 662 (929)
T KOG2062|consen 589 QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL------KEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPK 662 (929)
T ss_pred hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc------HHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCch
Confidence 34444555543 4688999999999988876654 2455566666777788899999999988877777777777
Q ss_pred HHHHHHHHHHHHhc
Q 004960 499 AERVLELLKIFMVL 512 (721)
Q Consensus 499 ~~~i~~~l~~~l~~ 512 (721)
...+-..+.+.+..
T Consensus 663 v~~frk~l~kvI~d 676 (929)
T KOG2062|consen 663 VNGFRKQLEKVIND 676 (929)
T ss_pred HHHHHHHHHHHhhh
Confidence 77777777777654
No 192
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.91 E-value=0.0017 Score=38.24 Aligned_cols=30 Identities=27% Similarity=0.175 Sum_probs=26.0
Q ss_pred HHHHHHhcccCCChhHHHHHHHHHHHHHHH
Q 004960 670 SLKILVRHASYFHEDVRYQAVFALKNILTA 699 (721)
Q Consensus 670 ~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~ 699 (721)
+++.+.++++|++++||.+|+.+|+.+.+.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 468889999999999999999999999763
No 193
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.90 E-value=0.72 Score=48.31 Aligned_cols=107 Identities=19% Similarity=0.150 Sum_probs=80.7
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHccccCCC--------CCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhc
Q 004960 81 QSLIESITLEHSAPVRRASANVVSIIAKYAVPAG--------EWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQT 152 (721)
Q Consensus 81 ~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~--------~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~ 152 (721)
+.+...|.+ .+-.+|....++.+.++......+ ...+++..+.+.+.+..+-.|.-|++.+..+++....
T Consensus 302 ~~~~~LLds-es~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk- 379 (1128)
T COG5098 302 EHFDELLDS-ESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSK- 379 (1128)
T ss_pred HHHHHHhcc-cchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCccc-
Confidence 455556665 578889888888888765332221 3456777788888889999999999999999965432
Q ss_pred ccccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhh
Q 004960 153 FRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEF 190 (721)
Q Consensus 153 ~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~ 190 (721)
+...-.++.....+.++| .+..||..|++.+.+++..
T Consensus 380 ~~~~r~ev~~lv~r~lqD-rss~VRrnaikl~SkLL~~ 416 (1128)
T COG5098 380 TVGRRHEVIRLVGRRLQD-RSSVVRRNAIKLCSKLLMR 416 (1128)
T ss_pred ccchHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHhc
Confidence 233457888888999999 8999999999999887643
No 194
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=96.89 E-value=0.093 Score=53.82 Aligned_cols=227 Identities=13% Similarity=0.053 Sum_probs=126.8
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChH
Q 004960 212 RQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVI 291 (721)
Q Consensus 212 ~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~ 291 (721)
...+.++|+..|.....++..+....+....-....+...+.+...... ...--..++++++.+.+.....++. +...
T Consensus 139 l~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~-~~~gI~elLeil~sii~gf~~plk~-eh~~ 216 (409)
T PF01603_consen 139 LELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETE-RHNGIAELLEILGSIINGFAVPLKE-EHKQ 216 (409)
T ss_dssp HHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS---STHHHHHHHHHHHHTT--SS--H-HHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcc-cccCHHHHHHHHHHHHhccCCCCcH-HHHH
Confidence 3367778888888888888887765544333333333333333322221 1222345667777777543221111 1223
Q ss_pred HHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcCccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccH-H
Q 004960 292 PILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCA-E 370 (721)
Q Consensus 292 ~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~-~ 370 (721)
-+...++|+.....- .........++..+...-+ .....++..+...--..+......-+.-+..+.+.++ .
T Consensus 217 fl~~vllPLh~~~~~------~~y~~~L~~~~~~f~~kdp-~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~ 289 (409)
T PF01603_consen 217 FLRKVLLPLHKSPHL------SSYHQQLSYCVVQFLEKDP-SLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPE 289 (409)
T ss_dssp HHHHTTGGGGGSTGG------GGTHHHHHHHHHHHHHH-G-GGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HH
T ss_pred HHHHHHHHHhcCCcH------HHHHHHHHHHHHHHHHhCc-hhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHH
Confidence 344567777665430 1123334455555554433 2445666666665444444455555777888888765 5
Q ss_pred HHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccC-----CChHHHHHHHHHHHH
Q 004960 371 WMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALED-----ESDEVKEKSYYALAA 445 (721)
Q Consensus 371 ~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~-----~~~~v~~~a~~al~~ 445 (721)
.+......++..+..+++++|..|-..|+..+.+=. +-.-+..+-..++|.+...+.. -+..||..+..++..
T Consensus 290 ~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~--~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~ 367 (409)
T PF01603_consen 290 EFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEY--FLSLISQNSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKI 367 (409)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHH--HHHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHH--HHHHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 667778899999999999999999998887754311 0011223334555555555433 256799999988887
Q ss_pred HHHh
Q 004960 446 FCED 449 (721)
Q Consensus 446 l~~~ 449 (721)
+.+.
T Consensus 368 l~~~ 371 (409)
T PF01603_consen 368 LMEM 371 (409)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 7543
No 195
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=96.88 E-value=0.026 Score=45.09 Aligned_cols=99 Identities=19% Similarity=0.336 Sum_probs=78.2
Q ss_pred HHHHHhHHHHHHHHHhhcCC----CCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHH
Q 004960 370 EWMKEKLESVLHIVLGALRD----PEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAA 445 (721)
Q Consensus 370 ~~~~~~l~~i~~~l~~~l~d----~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~ 445 (721)
+++.+++-.++..+...+.| ....-|..++.+++.+.+..++.+..+.++++..|...+..+ .++..++.+...
T Consensus 3 ~fL~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~ 80 (107)
T PF08064_consen 3 DFLQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNC 80 (107)
T ss_pred HHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHH
Confidence 35566666677766666666 466778999999999999777777777888888888777765 789999999999
Q ss_pred HHHhhh-hccccchHHHHHHHHHhhc
Q 004960 446 FCEDMG-EEILPFLDPLMGKLLAALE 470 (721)
Q Consensus 446 l~~~~~-~~~~~~~~~i~~~l~~~l~ 470 (721)
++...+ +++.|+++.++..+.+.+.
T Consensus 81 fi~~L~~~~l~~ll~~~~~~l~~~~~ 106 (107)
T PF08064_consen 81 FIKTLDEEDLGPLLDQIFAILLPLWD 106 (107)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHhcc
Confidence 999985 5678888888888777654
No 196
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.88 E-value=0.093 Score=51.96 Aligned_cols=196 Identities=14% Similarity=0.187 Sum_probs=109.2
Q ss_pred CCcHHHHHHHHhcC-CChhHHHHHHHHHHHhhhhhhcC------CCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 004960 34 PQVVPALVQHLRTA-KTPNVRQLAAVLLRKKITGHWAK------LSPQLKQLVKQSLIESITLEHSAPVRRASANVVSII 106 (721)
Q Consensus 34 p~~~~~l~~il~~~-~~~~vr~~a~~~l~~~i~~~w~~------~~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i 106 (721)
+.+...++.++.+- .++++.++...++-..+...-.. +........-..+++.+.+ +|..+...++.+++.+
T Consensus 54 ~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~-~D~~i~~~a~~iLt~L 132 (312)
T PF03224_consen 54 DQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDR-NDSFIQLKAAFILTSL 132 (312)
T ss_dssp --------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S--SSHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcC-CCHHHHHHHHHHHHHH
Confidence 35666777777664 78899999999988877543111 0000001133456665554 7999999999999999
Q ss_pred HccccCCCCCc---chHHHHHHhccC----CcHHHHHHHHHHHHHhhhhhh--hcccccHHHHHHHHHHhh------CCC
Q 004960 107 AKYAVPAGEWP---DLLPFLFQFSQS----EQEEHREVALILFSSLTETIG--QTFRPHFADMQALLLKCL------QDE 171 (721)
Q Consensus 107 ~~~~~~~~~~~---~ll~~l~~~l~~----~~~~~~~~al~~l~~i~~~~~--~~~~~~~~~l~~~l~~~l------~~~ 171 (721)
+...... .-. +.++.+++.+.+ ++.+....++.++..+..... ..+.. ...++.+...+ ...
T Consensus 133 l~~~~~~-~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~--~~~v~~l~~iL~~~~~~~~~ 209 (312)
T PF03224_consen 133 LSQGPKR-SEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK--SNGVSPLFDILRKQATNSNS 209 (312)
T ss_dssp HTSTTT---HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT--HHHHHHHHHHHH--------
T ss_pred HHcCCcc-ccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh--cCcHHHHHHHHHhhcccCCC
Confidence 8765432 222 567777777664 344566889999999985432 22211 45556666666 232
Q ss_pred CCHHHHHHHHHHHHHhhhhcCChhhHHHH--HhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCccc
Q 004960 172 TSNRVRIAALKAIGSFLEFTNDGAEVVKF--REFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAP 239 (721)
Q Consensus 172 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~ 239 (721)
.+.++...++.|+-.+.- .++ ....+ ..++|.+++.+... ..+++..-++.++.++++..+.
T Consensus 210 ~~~Ql~Y~~ll~lWlLSF-~~~--~~~~~~~~~~i~~L~~i~~~~---~KEKvvRv~la~l~Nl~~~~~~ 273 (312)
T PF03224_consen 210 SGIQLQYQALLCLWLLSF-EPE--IAEELNKKYLIPLLADILKDS---IKEKVVRVSLAILRNLLSKAPK 273 (312)
T ss_dssp -HHHHHHHHHHHHHHHTT-SHH--HHHHHHTTSHHHHHHHHHHH-----SHHHHHHHHHHHHHTTSSSST
T ss_pred CchhHHHHHHHHHHHHhc-CHH--HHHHHhccchHHHHHHHHHhc---ccchHHHHHHHHHHHHHhccHH
Confidence 456677777777654432 211 11111 33677777765544 4678888899999999988764
No 197
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.011 Score=59.56 Aligned_cols=153 Identities=18% Similarity=0.234 Sum_probs=111.0
Q ss_pred HHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhh-cCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhh
Q 004960 340 EFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGA-LRDPEQFVRGAASFALGQFAEYLQPEIVSHYE 418 (721)
Q Consensus 340 ~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~-l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 418 (721)
.++.+.+.+.+.-.|+++...++..--+.+. ..++..+++. .+|.+..||++|.-+||-+|..-+
T Consensus 519 d~I~ell~d~ds~lRy~G~fs~alAy~GTgn------~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~-------- 584 (926)
T COG5116 519 DYINELLYDKDSILRYNGVFSLALAYVGTGN------LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR-------- 584 (926)
T ss_pred HHHHHHhcCchHHhhhccHHHHHHHHhcCCc------chhHhhhheeecccCchHHHHHHHHheeeeEecCc--------
Confidence 3455667777788888887776655443322 2455556665 789999999999999998776543
Q ss_pred hHHHHHHHhccC-CChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhcchh
Q 004960 419 SVLPCILNALED-ESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIP 497 (721)
Q Consensus 419 ~~l~~l~~~l~~-~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~~~~~ 497 (721)
..++..++.|.+ .+..||...+-+|+-.|...+.. ..++.|-.+..+....||..++-+.+.+.....+.+.|
T Consensus 585 ~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~------~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp 658 (926)
T COG5116 585 DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK------VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNP 658 (926)
T ss_pred chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH------HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccCh
Confidence 344445555554 46789999999999888776643 23444555567888899999999999998888888888
Q ss_pred hHHHHHHHHHHHHhc
Q 004960 498 YAERVLELLKIFMVL 512 (721)
Q Consensus 498 ~~~~i~~~l~~~l~~ 512 (721)
-...|...+.+.+..
T Consensus 659 ~v~~I~k~f~~vI~~ 673 (926)
T COG5116 659 NVKRIIKKFNRVIVD 673 (926)
T ss_pred hHHHHHHHHHHHHhh
Confidence 888888877777653
No 198
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=96.79 E-value=0.034 Score=58.10 Aligned_cols=190 Identities=15% Similarity=0.197 Sum_probs=137.9
Q ss_pred CChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcCcc-ccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhh
Q 004960 288 KLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKH-VFPPVFEFASVSCQNASPKYREAAVTAIGIISE 366 (721)
Q Consensus 288 ~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~ 366 (721)
+|-..+.+.+++++...+ ...|.....-+......+.++ +-..+++.+...+.+.+.-.|+..+..+..++.
T Consensus 326 eyq~~i~p~l~kLF~~~D-------r~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~ 398 (690)
T KOG1243|consen 326 EYQVRIIPVLLKLFKSPD-------RQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAP 398 (690)
T ss_pred ccccchhhhHHHHhcCcc-------hHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHh
Confidence 455667788888887765 556766667777777777744 447899999999999999999999999999998
Q ss_pred ccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHH
Q 004960 367 GCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAF 446 (721)
Q Consensus 367 ~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l 446 (721)
.+.+... -.+++..+-..-.|+++.+|....-|+|.++.+..+..+. .-+..++.+.+.|+-..-|.++..++..-
T Consensus 399 kL~~~~L--n~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~--~vL~~aftralkdpf~paR~a~v~~l~at 474 (690)
T KOG1243|consen 399 KLSKRNL--NGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRK--RVLASAFTRALKDPFVPARKAGVLALAAT 474 (690)
T ss_pred hhchhhh--cHHHHHHHHhhCccccCcccccceeeecccccccchhhhc--cccchhhhhhhcCCCCCchhhhhHHHhhc
Confidence 7765421 2366777777777999999999999999999887654322 23344555678888777888888877755
Q ss_pred HHhhhhccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q 004960 447 CEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAA 490 (721)
Q Consensus 447 ~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~ 490 (721)
.+... .......|++.+.....+.+..+|..+..++......
T Consensus 475 ~~~~~--~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~k 516 (690)
T KOG1243|consen 475 QEYFD--QSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEK 516 (690)
T ss_pred ccccc--hhhhhhhccccccccccCcccchhhHHHHHHHHHHhh
Confidence 44432 1233456777777777788888888887776544333
No 199
>PF05536 Neurochondrin: Neurochondrin
Probab=96.77 E-value=1 Score=48.08 Aligned_cols=241 Identities=12% Similarity=0.131 Sum_probs=133.2
Q ss_pred CCCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhcCCCHHHH----HHHHHHHHHHHhhc-------CCHHHHHHHHH
Q 004960 33 DPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLK----QLVKQSLIESITLE-------HSAPVRRASAN 101 (721)
Q Consensus 33 ~p~~~~~l~~il~~~~~~~vr~~a~~~l~~~i~~~w~~~~~~~~----~~i~~~ll~~l~~e-------~~~~vr~~~~~ 101 (721)
++..+..++.++...+ ..-|..|..++++.++.. ......+ +.|--.++..|... +....+..+..
T Consensus 3 ~~~~l~~c~~lL~~~~-D~~rfagL~lvtk~~~~~--~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~Lavs 79 (543)
T PF05536_consen 3 QSASLEKCLSLLKSAD-DTERFAGLLLVTKLLDAD--DEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVS 79 (543)
T ss_pred chHHHHHHHHHhccCC-cHHHHHHHHHHHHcCCCc--hhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHH
Confidence 3455778888887654 445555556666655431 1111111 11112334444322 22344555556
Q ss_pred HHHHHHccc-cC-CCCCcchHHHHHHhccCCcH-HHHHHHHHHHHHhhhhhhhcccccH-HHHHHHHHHhhCCCCCHHHH
Q 004960 102 VVSIIAKYA-VP-AGEWPDLLPFLFQFSQSEQE-EHREVALILFSSLTETIGQTFRPHF-ADMQALLLKCLQDETSNRVR 177 (721)
Q Consensus 102 ~l~~i~~~~-~~-~~~~~~ll~~l~~~l~~~~~-~~~~~al~~l~~i~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~vr 177 (721)
+++.+.+.. .. ....-.-+|.+.+.+.+.+. ....-++.+|..++... +.....+ .+.++.+.+.+.+ .+...
T Consensus 80 vL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~-~G~~aLl~~g~v~~L~ei~~~--~~~~~ 156 (543)
T PF05536_consen 80 VLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSP-EGAKALLESGAVPALCEIIPN--QSFQM 156 (543)
T ss_pred HHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCc-HhHHHHHhcCCHHHHHHHHHh--CcchH
Confidence 666666511 10 11334458899999977666 77888999999998432 2111111 1223333333333 34567
Q ss_pred HHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCccc------chhhhHHHHHHH
Q 004960 178 IAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAP------LLGDSVKSIVHF 251 (721)
Q Consensus 178 ~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~------~~~~~~~~l~~~ 251 (721)
..|+..+..++..... .........+..++..+...+.......+..++..|..+....+. .-......+...
T Consensus 157 E~Al~lL~~Lls~~~~-~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~g 235 (543)
T PF05536_consen 157 EIALNLLLNLLSRLGQ-KSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKG 235 (543)
T ss_pred HHHHHHHHHHHHhcch-hhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHH
Confidence 7788887777665431 112222334445555554455544556677888999988876632 123345556666
Q ss_pred HHHhhcCCCCChHHHHHHHHHHHHHHHHhH
Q 004960 252 SLEVSSSHNLEPNTRHQAIQIISWLAKYKY 281 (721)
Q Consensus 252 ~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~ 281 (721)
+..++++. ..+.-|..++.+...+.+..+
T Consensus 236 l~~iL~sr-~~~~~R~~al~Laa~Ll~~~G 264 (543)
T PF05536_consen 236 LRDILQSR-LTPSQRDPALNLAASLLDLLG 264 (543)
T ss_pred HHHHHhcC-CCHHHHHHHHHHHHHHHHHhC
Confidence 66666655 467889999988888877543
No 200
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=96.76 E-value=0.033 Score=44.04 Aligned_cols=98 Identities=19% Similarity=0.375 Sum_probs=77.5
Q ss_pred HHHHHhHHHHHHHHHhhcCCCC--H--hHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHH
Q 004960 370 EWMKEKLESVLHIVLGALRDPE--Q--FVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAA 445 (721)
Q Consensus 370 ~~~~~~l~~i~~~l~~~l~d~~--~--~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~ 445 (721)
+.+.+++-.++..+...+.|.+ . .-|..+..+++.+.+..++.+..+.++++..|...|..+ +.|..++.+...
T Consensus 3 ~fL~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~--eL~~~al~~W~~ 80 (107)
T smart00802 3 DFLKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIP--ELRSLALRCWHV 80 (107)
T ss_pred HHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch--hHHHHHHHHHHH
Confidence 4566777777888888887765 2 348999999999999888878888889998888888754 699999999999
Q ss_pred HHHhhh-hccccchHHHHHHHHHhh
Q 004960 446 FCEDMG-EEILPFLDPLMGKLLAAL 469 (721)
Q Consensus 446 l~~~~~-~~~~~~~~~i~~~l~~~l 469 (721)
++...+ +++.|.++.++..+.+.+
T Consensus 81 ~i~~L~~~~l~~ll~~~~~~i~~~~ 105 (107)
T smart00802 81 LIKTLKEEELGPLLDQIFAAILPLW 105 (107)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHhc
Confidence 999885 456677777776666544
No 201
>PF05536 Neurochondrin: Neurochondrin
Probab=96.73 E-value=1.1 Score=47.87 Aligned_cols=238 Identities=13% Similarity=0.095 Sum_probs=127.4
Q ss_pred cchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcc---cccHHHH-HHHHHHhhCCC------CCHHHHHHHHHHHHH
Q 004960 117 PDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTF---RPHFADM-QALLLKCLQDE------TSNRVRIAALKAIGS 186 (721)
Q Consensus 117 ~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~---~~~~~~l-~~~l~~~l~~~------~~~~vr~~a~~~l~~ 186 (721)
+.-+.....++++.+...|.+|+..+..+++..+..- ...++.+ .+.+.++|... +....+..|+..+..
T Consensus 4 ~~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~ 83 (543)
T PF05536_consen 4 SASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAA 83 (543)
T ss_pred hHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHH
Confidence 4567788889998888899999999999997643210 1122222 23344444431 123345556666666
Q ss_pred hhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCH-HHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHhhcCCCCChHH
Q 004960 187 FLEFTNDGAEVVKFREFIPSILNVSRQCLASGEE-DVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNT 265 (721)
Q Consensus 187 l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~-~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 265 (721)
++... +-.....+-..+|.+++.+ ...+. ++...|+++|..++......-.-.-...++.+.+.+.+ .+..
T Consensus 84 f~~~~-~~a~~~~~~~~IP~Lle~l----~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~---~~~~ 155 (543)
T PF05536_consen 84 FCRDP-ELASSPQMVSRIPLLLEIL----SSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN---QSFQ 155 (543)
T ss_pred HcCCh-hhhcCHHHHHHHHHHHHHH----HcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh---Ccch
Confidence 55511 1111123556788888853 33444 88899999999999654221111111223333333333 2345
Q ss_pred HHHHHHHHHHHHHHhHhhhhh--cCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcC---------ccc
Q 004960 266 RHQAIQIISWLAKYKYNSLKK--HKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA---------KHV 334 (721)
Q Consensus 266 r~~a~~~l~~l~~~~~~~~~~--~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~---------~~~ 334 (721)
...++.+|..++......... ...+..+++.+-...+... ...+..+...+..+-...+ +.+
T Consensus 156 ~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~-------~~~kfell~~L~~~L~~~~~~~~~~~~~~~W 228 (543)
T PF05536_consen 156 MEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFH-------GEDKFELLEFLSAFLPRSPILPLESPPSPKW 228 (543)
T ss_pred HHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhc-------cchHHHHHHHHHHhcCcCCccccccCChhhh
Confidence 677788887776543322211 1122333333333333221 1122222333333222111 235
Q ss_pred cHhHHHHHHhhhcCC-ChhhHhHHHHHHHHHhhccH
Q 004960 335 FPPVFEFASVSCQNA-SPKYREAAVTAIGIISEGCA 369 (721)
Q Consensus 335 ~~~i~~~l~~~l~~~-~~~~r~~al~~l~~i~~~~~ 369 (721)
...+...+...+++. ....|..++.+.+++.+..+
T Consensus 229 ~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G 264 (543)
T PF05536_consen 229 LSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLG 264 (543)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Confidence 566777777777664 67889999999888887644
No 202
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.72 E-value=0.053 Score=52.92 Aligned_cols=131 Identities=21% Similarity=0.271 Sum_probs=111.8
Q ss_pred HHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhh-hhccccchH
Q 004960 381 HIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDM-GEEILPFLD 459 (721)
Q Consensus 381 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~-~~~~~~~~~ 459 (721)
.-++..+++.+..||..|...+..+....+.....++..+++.+...+.|.+..||.....++..++... +..+.|++.
T Consensus 61 keLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~ 140 (393)
T KOG2149|consen 61 KELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVS 140 (393)
T ss_pred HHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHH
Confidence 3456678899999999999999999888766667788899999999999999999999999999877665 445689999
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHh
Q 004960 460 PLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMV 511 (721)
Q Consensus 460 ~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~ 511 (721)
-+++.+...+.+..+++|.-++..+..++..+++.+..+...+++.+...+.
T Consensus 141 l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d~i~ 192 (393)
T KOG2149|consen 141 LLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILENFKDVIS 192 (393)
T ss_pred HHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988888777767766655553
No 203
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.72 E-value=3 Score=52.72 Aligned_cols=239 Identities=18% Similarity=0.211 Sum_probs=134.3
Q ss_pred ccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHH-HHHHhHHHHHHHHHhhcCCCCHhHHH----HHHHHHHHHHhh
Q 004960 334 VFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAE-WMKEKLESVLHIVLGALRDPEQFVRG----AASFALGQFAEY 408 (721)
Q Consensus 334 ~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~-~~~~~l~~i~~~l~~~l~d~~~~vr~----~a~~~l~~l~~~ 408 (721)
++..+++.+.+...++.|..|.+++..++++.+..+. .+..+..+++..++..+.|....+-. .+-.++-.+...
T Consensus 1030 i~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~ 1109 (3550)
T KOG0889|consen 1030 MFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIESMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRV 1109 (3550)
T ss_pred hHHHHHHHHHHHhccHhHHHHcCCCceeeeehhhchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHH
Confidence 4566677777778889999999999999999998773 23344456666666666543222111 222222222221
Q ss_pred hh------HHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHH-HHhhcCC----ChhHH
Q 004960 409 LQ------PEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKL-LAALENS----PRNLQ 477 (721)
Q Consensus 409 ~~------~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l-~~~l~~~----~~~v~ 477 (721)
+. ..-......++..+...+.+++..||..+..+|..+.+..+..+...+...-+.+ ...+..+ ....+
T Consensus 1110 ~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~VR~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~q 1189 (3550)
T KOG0889|consen 1110 IFIDELAEEERAKSAMNVFSPLVLELFNPNSDVREFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRALPFTIQ 1189 (3550)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccccccCCHHHH
Confidence 11 1112346788888999999999999999999999998887544333332222222 2222222 33444
Q ss_pred HHHHHHHHHHHHHhhhcchhhHHHHHHHHH---HHHh----------ccCc-----hhhhhHHHHHHHHHHHHHhhc--h
Q 004960 478 ETCMSAIGSVAAAAEQAFIPYAERVLELLK---IFMV----------LTND-----EDLRSRARATELLGLVAESVG--R 537 (721)
Q Consensus 478 ~~~l~~l~~l~~~~~~~~~~~~~~i~~~l~---~~l~----------~~~~-----~~~~~~~~~~~~l~~l~~~~~--~ 537 (721)
...++++..+....+ .+-.|...+.-... .+.. .... ....+|..+++.++....... .
T Consensus 1190 ig~vd~~~fC~~l~p-~~f~~~~~l~~l~~~~~~La~~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~ 1268 (3550)
T KOG0889|consen 1190 IGHLDAITFCLSLGP-CLFDFTEELYRLKRFLIALADAEEDELATIQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRT 1268 (3550)
T ss_pred hhhHHHHHHHHHcCC-cccCchHHHHHHHHHHHHhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHhcccccc
Confidence 455555554444333 22233333222111 1110 0000 112356677777766654332 1
Q ss_pred hhccCChHHHHHHHHhccCCCChhhHHHHHHHHHHH
Q 004960 538 ARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNI 573 (721)
Q Consensus 538 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l 573 (721)
....++-+.++..+...+..+.+++.+.+..++..+
T Consensus 1269 ~~~~~~r~kii~v~fk~l~~~~~Ei~~~~~~~l~~v 1304 (3550)
T KOG0889|consen 1269 PQHAELREKIIAVFFKSLYKRSSELIEVALEGLRKV 1304 (3550)
T ss_pred hhhhhhhhHHHHHHHHHHcCChHHHHHHHHHHHHhh
Confidence 234456678888888888777777777666655544
No 204
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=96.68 E-value=0.022 Score=63.09 Aligned_cols=173 Identities=13% Similarity=0.149 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHHHcCcccc---HhHHHHHHhhhcC-CChh-hHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCC
Q 004960 316 DRAAAEVIDTMALNLAKHVF---PPVFEFASVSCQN-ASPK-YREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDP 390 (721)
Q Consensus 316 ~~~a~~~l~~l~~~~~~~~~---~~i~~~l~~~l~~-~~~~-~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~ 390 (721)
|+.|..+|..+++.+|.+++ +.+.+.+...+.. .+.. .-...+..+..+.......+.+ +-..+|.++.++.+.
T Consensus 750 rrgael~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~~~~~d~~~~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~~~s~ 828 (1549)
T KOG0392|consen 750 RRGAELFLKILSKMFGGSLAAKLPHLWDFLLKALSGLIDGNDEFLSSFEVFNSLAPLMHSFLHP-LGSLLPRLFFFVRSI 828 (1549)
T ss_pred hhhHHHHHHHHHHHhhHHHHHhcchHHHHHHHhhhccCCCCcchhhhHHHHHHHHHhhhhhhhh-hhhhhhHHHHhcccc
Confidence 56677889999998886543 4444444433321 1111 2233344555555444455555 556778889999999
Q ss_pred CHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHH-HHHHHHhhhhccccchHHHHHHHHHhh
Q 004960 391 EQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYA-LAAFCEDMGEEILPFLDPLMGKLLAAL 469 (721)
Q Consensus 391 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~a-l~~l~~~~~~~~~~~~~~i~~~l~~~l 469 (721)
++.+|.+++.+++.+...... +.+..++..++..+.+.+..++..+... +..+.......+.||..-++..|+..+
T Consensus 829 ~~a~r~~~ar~i~~~~k~~~~---e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~m 905 (1549)
T KOG0392|consen 829 HIAVRYAAARCIGTMFKSATR---ETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRRM 905 (1549)
T ss_pred hHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccceeehhhhhccc
Confidence 999999999999998876543 3334445555555566655555554444 444555556678899999999999999
Q ss_pred cCCChhHHHHHHHHHHHHHHHhh
Q 004960 470 ENSPRNLQETCMSAIGSVAAAAE 492 (721)
Q Consensus 470 ~~~~~~v~~~~l~~l~~l~~~~~ 492 (721)
.+....+|..+-.+++.++...+
T Consensus 906 sd~~d~vR~aat~~fa~lip~~~ 928 (1549)
T KOG0392|consen 906 SDQIDSVREAATKVFAKLIPLLP 928 (1549)
T ss_pred ccchHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999987765
No 205
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=96.66 E-value=0.52 Score=43.32 Aligned_cols=114 Identities=22% Similarity=0.352 Sum_probs=77.5
Q ss_pred hhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCC
Q 004960 352 KYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDE 431 (721)
Q Consensus 352 ~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~ 431 (721)
..|+.+++.+.++.. +.-+..+.+.+.+++...|..+..++|++-.. .-+|.+.+.|.+.
T Consensus 171 ~~Ry~amF~LRn~g~----------EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~----------~ai~~L~k~L~d~ 230 (289)
T KOG0567|consen 171 FERYRAMFYLRNIGT----------EEAINALIDGLADDSALFRHEVAFVFGQLQSP----------AAIPSLIKVLLDE 230 (289)
T ss_pred HHHHhhhhHhhccCc----------HHHHHHHHHhcccchHHHHHHHHHHHhhccch----------hhhHHHHHHHHhh
Confidence 456667766665542 24566777888888999999999998876543 2344555555543
Q ss_pred --ChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhcc
Q 004960 432 --SDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAF 495 (721)
Q Consensus 432 --~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~~~ 495 (721)
++-||..|+.||+.+.. +..++.|.+.+.+..+-+++.+..++..+--..++.|
T Consensus 231 ~E~pMVRhEaAeALGaIa~----------e~~~~vL~e~~~D~~~vv~esc~valdm~eyens~~~ 286 (289)
T KOG0567|consen 231 TEHPMVRHEAAEALGAIAD----------EDCVEVLKEYLGDEERVVRESCEVALDMLEYENSKEF 286 (289)
T ss_pred hcchHHHHHHHHHHHhhcC----------HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhccccc
Confidence 46789999999998863 3455667777788888888888777766554444433
No 206
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.61 E-value=1.3 Score=47.31 Aligned_cols=210 Identities=19% Similarity=0.194 Sum_probs=137.7
Q ss_pred hhHHHHHHHHhcC-CChHHHHHHHHHHHHHhcC------CCcHHHHHHHHhcC-CChhHHHHHHHHHHHhhhhhh-----
Q 004960 2 AQSLELLLIQFLM-PDNDARRQAEDQIKRLAKD------PQVVPALVQHLRTA-KTPNVRQLAAVLLRKKITGHW----- 68 (721)
Q Consensus 2 ~~~l~~ll~~~~s-~d~~~r~~A~~~L~~~~~~------p~~~~~l~~il~~~-~~~~vr~~a~~~l~~~i~~~w----- 68 (721)
++.|..+..-..+ .=-+.|+.|-..|+.+... ......+++.|.++ .+++.-..+.-.+.+.+..--
T Consensus 21 aETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~ 100 (970)
T KOG0946|consen 21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVM 100 (970)
T ss_pred HhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhc
Confidence 3456666666643 3456789998888876543 34567888888875 578888888877777665421
Q ss_pred --cCCCHHHHHH----------HHHHHHHHHhhcCCHHHHHHHHHHHHHHHccccCC-----CCCcchHHHHHHhccCCc
Q 004960 69 --AKLSPQLKQL----------VKQSLIESITLEHSAPVRRASANVVSIIAKYAVPA-----GEWPDLLPFLFQFSQSEQ 131 (721)
Q Consensus 69 --~~~~~~~~~~----------i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~-----~~~~~ll~~l~~~l~~~~ 131 (721)
+...++.-.. ....+++.+. +.|-.||..+.+.++.+.+...++ -..|.-+..+...+.+..
T Consensus 101 dds~qsdd~g~~iae~fik~qd~I~lll~~~e-~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Dsr 179 (970)
T KOG0946|consen 101 DDSTQSDDLGLWIAEQFIKNQDNITLLLQSLE-EFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSR 179 (970)
T ss_pred ccchhhhHHHHHHHHHHHcCchhHHHHHHHHH-hhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhh
Confidence 0111111111 1224445554 478999999999999998765442 135777889999998888
Q ss_pred HHHHHHHHHHHHHhhhhhhhccc-ccHHHHHHHHHHhhCCCC---CHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHH
Q 004960 132 EEHREVALILFSSLTETIGQTFR-PHFADMQALLLKCLQDET---SNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSI 207 (721)
Q Consensus 132 ~~~~~~al~~l~~i~~~~~~~~~-~~~~~l~~~l~~~l~~~~---~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l 207 (721)
.-.|-.++..+..+.++.+.... -.++.++..++..+..++ ..-|..-++..+.+++.+...+...-+..+++|.+
T Consensus 180 E~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL 259 (970)
T KOG0946|consen 180 EPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRL 259 (970)
T ss_pred hhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHH
Confidence 88889999999999987653211 123444445555554322 23467778888889988876665444456789988
Q ss_pred HHHHH
Q 004960 208 LNVSR 212 (721)
Q Consensus 208 l~~l~ 212 (721)
...+.
T Consensus 260 ~klL~ 264 (970)
T KOG0946|consen 260 LKLLS 264 (970)
T ss_pred HhhcC
Confidence 87653
No 207
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.60 E-value=0.19 Score=54.95 Aligned_cols=115 Identities=23% Similarity=0.265 Sum_probs=76.9
Q ss_pred hHHHHHHhhhcCC-ChhhHhHHHHHHHHHhhccHH-HHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhh----h
Q 004960 337 PVFEFASVSCQNA-SPKYREAAVTAIGIISEGCAE-WMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYL----Q 410 (721)
Q Consensus 337 ~i~~~l~~~l~~~-~~~~r~~al~~l~~i~~~~~~-~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~----~ 410 (721)
.++..+.+.++++ .|-.|.=.+.++|.+-+.... .....-......+...+.|+-|.||.+|..+||.+.... .
T Consensus 599 ~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fd 678 (1387)
T KOG1517|consen 599 NLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFD 678 (1387)
T ss_pred cHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccc
Confidence 4555566666663 577777788888887765432 111112334566788899999999999999999998763 2
Q ss_pred HH-------HH-----HhhhhHHH----HHHHhccCCChHHHHHHHHHHHHHHHhhh
Q 004960 411 PE-------IV-----SHYESVLP----CILNALEDESDEVKEKSYYALAAFCEDMG 451 (721)
Q Consensus 411 ~~-------~~-----~~~~~~l~----~l~~~l~~~~~~v~~~a~~al~~l~~~~~ 451 (721)
.. +. ...+..++ .++..+++..+-||....-+|..++....
T Consensus 679 e~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~ 735 (1387)
T KOG1517|consen 679 EQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGYV 735 (1387)
T ss_pred hhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhhH
Confidence 11 00 11333333 67777888888899998888888876543
No 208
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=96.56 E-value=0.19 Score=48.66 Aligned_cols=212 Identities=12% Similarity=0.030 Sum_probs=134.2
Q ss_pred CCChhhHhHHHHHHHHHhh--ccHHHHHHhHHHHHHHHHhhcCCCC-HhHHHHHHHHHHHHHhhhhHH-HHHhhhhHHHH
Q 004960 348 NASPKYREAAVTAIGIISE--GCAEWMKEKLESVLHIVLGALRDPE-QFVRGAASFALGQFAEYLQPE-IVSHYESVLPC 423 (721)
Q Consensus 348 ~~~~~~r~~al~~l~~i~~--~~~~~~~~~l~~i~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~-~~~~~~~~l~~ 423 (721)
..+|..-.+++.-+..... .......|+-..+...+-.+|+..= .-|...|+.+...+.+..++. +.+.+.-..+.
T Consensus 22 ~~EWAD~is~L~kL~k~lq~~~~~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~G 101 (307)
T PF04118_consen 22 SSEWADYISFLGKLLKALQNSNNQFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPG 101 (307)
T ss_pred hhhHHHHHHHHHHHHHHHhccCCCCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHH
Confidence 4567777666655555554 2222233333455667777886442 347778888888888877653 34455666677
Q ss_pred HHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhcchhhHHHHH
Q 004960 424 ILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVL 503 (721)
Q Consensus 424 l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~ 503 (721)
++..+......||...+..+.+..-..+..+.|.+.+++..++..+.+...++.+.++..+..+....+.. -|+..+.
T Consensus 102 Lfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~--~F~~~lw 179 (307)
T PF04118_consen 102 LFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDK--YFWQCLW 179 (307)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChh--HHHHHHH
Confidence 77777777778998888888887777778889999999999999999988889999999998888887765 2344333
Q ss_pred HHHHHHHhccCchhhhhHHHHHHHHHHHHHhhc-----------hhhccCChHHHHHHHHhccCCCChhhHHHHHHH
Q 004960 504 ELLKIFMVLTNDEDLRSRARATELLGLVAESVG-----------RARMEPILPPFVEAAISGFGLEFSELREYTHGF 569 (721)
Q Consensus 504 ~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~-----------~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~ 569 (721)
-.+ + +++ ..|..++..+..--.... ...+.+.-.-++..+..+++|++.-|++.++..
T Consensus 180 l~i---i---~sp--~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDl 248 (307)
T PF04118_consen 180 LCI---I---TSP--SRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDL 248 (307)
T ss_pred HHH---h---cCc--chhHHHHHHHHHhCCcccccccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHH
Confidence 322 2 122 345455554433221111 001233334455666666666555555544443
No 209
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=96.54 E-value=0.03 Score=43.00 Aligned_cols=85 Identities=20% Similarity=0.267 Sum_probs=67.3
Q ss_pred HHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhh
Q 004960 338 VFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY 417 (721)
Q Consensus 338 i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 417 (721)
.++.....+.++....|-.|+..+..+..... ......+.++..+...++|+++.|--+|.+++..++...+.
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~------ 76 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD------ 76 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH------
Confidence 34555566788999999999999999998755 23345788999999999999999999999999999998764
Q ss_pred hhHHHHHHHhccC
Q 004960 418 ESVLPCILNALED 430 (721)
Q Consensus 418 ~~~l~~l~~~l~~ 430 (721)
.+++.|++...+
T Consensus 77 -~vl~~L~~~y~~ 88 (92)
T PF10363_consen 77 -EVLPILLDEYAD 88 (92)
T ss_pred -HHHHHHHHHHhC
Confidence 455555554444
No 210
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=96.46 E-value=0.69 Score=44.87 Aligned_cols=123 Identities=11% Similarity=0.162 Sum_probs=95.1
Q ss_pred cccchHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHhh-hcchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHH
Q 004960 454 ILPFLDPLMGKLLAALENS-PRNLQETCMSAIGSVAAAAE-QAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLV 531 (721)
Q Consensus 454 ~~~~~~~i~~~l~~~l~~~-~~~v~~~~l~~l~~l~~~~~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l 531 (721)
..|+-..+...|.++++-. ...|...++++...+....| +.+...+.-..|.+..++... ...+|...++.+...
T Consensus 48 ~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~a---si~Vkp~lL~i~e~~ 124 (307)
T PF04118_consen 48 YIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYA---SIQVKPQLLDIYEKY 124 (307)
T ss_pred eeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHH---HHhhHHHHHHHHHHH
Confidence 4466668888899998866 56799999999999999888 344444544455555554332 235677778887776
Q ss_pred HHhhchhhccCChHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHcccC
Q 004960 532 AESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDG 580 (721)
Q Consensus 532 ~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~ 580 (721)
...+|+ .+.|.++.++-.++.++.++..++.+.++..+..+....|..
T Consensus 125 ~lpL~~-~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~ 172 (307)
T PF04118_consen 125 YLPLGP-ALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDK 172 (307)
T ss_pred hcCccH-HHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChh
Confidence 667777 788888999999999999889999999999999999999986
No 211
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.38 E-value=1.7 Score=45.79 Aligned_cols=129 Identities=15% Similarity=0.148 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHcCccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccH------HHHHHhHHHHHHHHHhhcCCCCH
Q 004960 319 AAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCA------EWMKEKLESVLHIVLGALRDPEQ 392 (721)
Q Consensus 319 a~~~l~~l~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~------~~~~~~l~~i~~~l~~~l~d~~~ 392 (721)
...++..++...|.-.+ .-+..+.+.+.+++.-.|.+-+.+.++++.... +.+...+..++..+.+.+.|.+|
T Consensus 282 islFl~kls~l~p~i~l-rq~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~p 360 (1128)
T COG5098 282 ISLFLNKLSELSPGIML-RQYEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYP 360 (1128)
T ss_pred HHHHHHHHhhcCchHHH-HHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccch
Confidence 33455556655543222 224556667889999999999999999987643 34555688899999999999999
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHh
Q 004960 393 FVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCED 449 (721)
Q Consensus 393 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~ 449 (721)
.+|..|++.+..++..-. .....-+.+.......++|.+..||.+|.+.++.++-.
T Consensus 361 y~RtKalqv~~kifdl~s-k~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~ 416 (1128)
T COG5098 361 YTRTKALQVLEKIFDLNS-KTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMR 416 (1128)
T ss_pred HHHHHHHHHHHHHHhCcc-cccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhc
Confidence 999999999999886532 11223356777788889999999999999999988754
No 212
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=96.31 E-value=0.88 Score=41.90 Aligned_cols=91 Identities=20% Similarity=0.219 Sum_probs=67.7
Q ss_pred HHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcC--CCCHhHHHHHHHHHHHHHhhhhHHHHH
Q 004960 338 VFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALR--DPEQFVRGAASFALGQFAEYLQPEIVS 415 (721)
Q Consensus 338 i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~~~~~ 415 (721)
-+..+.+.+..++.-.|+.+..+||.+-.. .-+|.+.+.|. .++|.||..|+.+||.++..
T Consensus 188 aI~al~~~l~~~SalfrhEvAfVfGQl~s~----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e------- 250 (289)
T KOG0567|consen 188 AINALIDGLADDSALFRHEVAFVFGQLQSP----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIADE------- 250 (289)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHhhccch----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH-------
Confidence 445555566666777888888888888653 33455555554 45999999999999988765
Q ss_pred hhhhHHHHHHHhccCCChHHHHHHHHHHHHHHH
Q 004960 416 HYESVLPCILNALEDESDEVKEKSYYALAAFCE 448 (721)
Q Consensus 416 ~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~ 448 (721)
..++.|.+.++|+.+-|+..+..+|..+-.
T Consensus 251 ---~~~~vL~e~~~D~~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 251 ---DCVEVLKEYLGDEERVVRESCEVALDMLEY 280 (289)
T ss_pred ---HHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 567778888999988899988888876543
No 213
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=96.26 E-value=1.6 Score=45.26 Aligned_cols=310 Identities=16% Similarity=0.145 Sum_probs=145.2
Q ss_pred hhhHhHHHHHHHHHhhccHHHHHHhHHHHHH-HHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHh-hhhHHHHHHHhc
Q 004960 351 PKYREAAVTAIGIISEGCAEWMKEKLESVLH-IVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSH-YESVLPCILNAL 428 (721)
Q Consensus 351 ~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~-~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~-~~~~l~~l~~~l 428 (721)
++.|..|..+||.++...+.. .+..++. .+..+|++++..=|..|+-.+..++.......... .+.+.+.|...|
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~---~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L 177 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPES---SLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEIL 177 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHH
Confidence 568999999999999876432 2334454 68889999999999999999999988765321111 245566666666
Q ss_pred cCCC-----------hHHHHHHHHHHHHHHHhhh--hccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHH----HHHh
Q 004960 429 EDES-----------DEVKEKSYYALAAFCEDMG--EEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSV----AAAA 491 (721)
Q Consensus 429 ~~~~-----------~~v~~~a~~al~~l~~~~~--~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l----~~~~ 491 (721)
.++. .++|..+-..+..+.+... ..-.|.++.+++.-.. ..++..--+.+-...+.. ....
T Consensus 178 ~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~~~~~klp~l~~~v~~~~~--~~p~~fsi~~A~~v~~~~~~~l~~~l 255 (441)
T PF12054_consen 178 ENPEPPYYDELVPSLKRLRTECQQLLATFRDVGKVPPSKLPSLPVVVQGEPE--AGPEAFSIEQAEKVVGEDFEKLKKSL 255 (441)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhccccccccccccc--cCCccCCHHHHHHHHHHHHHHHHHhc
Confidence 6432 1344444444444433321 1111222211110000 000111112222222222 2222
Q ss_pred hhcc----hhhHHHHHHHHHHHHhccCc--hhhhhHHHHHHHHHHHHH-hhchhhccCChHHHHHHHHhccC-CCChhhH
Q 004960 492 EQAF----IPYAERVLELLKIFMVLTND--EDLRSRARATELLGLVAE-SVGRARMEPILPPFVEAAISGFG-LEFSELR 563 (721)
Q Consensus 492 ~~~~----~~~~~~i~~~l~~~l~~~~~--~~~~~~~~~~~~l~~l~~-~~~~~~~~~~~~~i~~~l~~~l~-~~~~~~~ 563 (721)
+..- .+-++.--..+...+..... .....|-.+.-+-..++. .+ |+.+.|.+..+|+. ++ .++..++
T Consensus 256 ~~~~k~~a~~~Le~~r~~l~~ai~~~~~~~~~~~~~V~Aa~A~A~v~l~~l-P~KLnPiIrpLMdS----IK~Een~~LQ 330 (441)
T PF12054_consen 256 SPSQKLSALQALEDRRQRLQAAIEEAKEVQTSRDVRVLAAAASALVALGGL-PKKLNPIIRPLMDS----IKREENELLQ 330 (441)
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCCccHHHHHHHHH----hhccccHHHH
Confidence 2110 01111111111111111000 011111111111111111 11 44555555555555 44 4578899
Q ss_pred HHHHHHHHHHHHHcccCcccchhhhHHHHHhhccCCCCCccCCC--CCccccccCCCCCCCCchhhhhccccce-eeecc
Q 004960 564 EYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDID--GSDDENINGFGGVSSDDEAHCERSVRNI-SVRTG 640 (721)
Q Consensus 564 ~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 640 (721)
..+..++..++..+-..-..=-++|+..|...+-.|....-... ....+.+-.+.. +.+..+..+.... .-...
T Consensus 331 ~rsA~slA~Li~~~~~rkp~PndKIvkNLc~flC~D~seTP~~~~~~~~~~gILsl~k---~~~~~~~~~~~~~~~~~~~ 407 (441)
T PF12054_consen 331 QRSAESLARLIQLCVDRKPCPNDKIVKNLCTFLCVDTSETPEFSHNVDKKDGILSLRK---EEDKADHADAASEEREQKE 407 (441)
T ss_pred HHHHHHHHHHHHHHhCCCCCCcHHHHHHHhhhhccCcccCCCCCCCcchhhcccchhh---hcccccccccccchhhhhh
Confidence 99999999998877743333357888888877666543211110 000000000000 0000000000000 00111
Q ss_pred hhhhHHHHHHHHHHHHHHccccccchHHHHHHH
Q 004960 641 VLDEKAAATQALGLFALHTKSSYAPFLEESLKI 673 (721)
Q Consensus 641 ~~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 673 (721)
..=.|+.|..+|..++..+|+.+..-++.+.+.
T Consensus 408 a~I~RrGA~~aL~~l~~~FG~~Lf~~lP~Lw~~ 440 (441)
T PF12054_consen 408 ARIQRRGAELALEQLAKRFGSSLFEKLPKLWEC 440 (441)
T ss_pred hHHHhcCHHHHHHHHHHHHhHHHHHhhhHHHhh
Confidence 223688999999999999999887777766543
No 214
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.22 E-value=1.8 Score=44.61 Aligned_cols=164 Identities=17% Similarity=0.139 Sum_probs=107.8
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHhcC-----CCcHHHHHHHHhc---CCChhHHHHHHHHHHHhhhhhhcCCCHH
Q 004960 3 QSLELLLIQFLMPDNDARRQAEDQIKRLAKD-----PQVVPALVQHLRT---AKTPNVRQLAAVLLRKKITGHWAKLSPQ 74 (721)
Q Consensus 3 ~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~-----p~~~~~l~~il~~---~~~~~vr~~a~~~l~~~i~~~w~~~~~~ 74 (721)
+-+.++|.++-|+|..+|+..-|-|..+... ......|+.-+.. +..+.||.-|...|.+.= ....+
T Consensus 91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Q-----e~~~n 165 (885)
T COG5218 91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQ-----EMELN 165 (885)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH-----hccCC
Confidence 4578999999999999999999999877653 2334444444433 457899999998887652 23444
Q ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHH-HHHHHHHHHHhhhhhhhcc
Q 004960 75 LKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEH-REVALILFSSLTETIGQTF 153 (721)
Q Consensus 75 ~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~-~~~al~~l~~i~~~~~~~~ 153 (721)
....+++.+...+.+||+..||+.+...+. .-+.-.|.+.+...+-+... |..--.++-.+-......+
T Consensus 166 een~~~n~l~~~vqnDPS~EVRr~allni~----------vdnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~lsi 235 (885)
T COG5218 166 EENRIVNLLKDIVQNDPSDEVRRLALLNIS----------VDNSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLSI 235 (885)
T ss_pred hHHHHHHHHHHHHhcCcHHHHHHHHHHHee----------eCCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhccc
Confidence 567778888888888999999987544332 12345577777776655433 3344444444432222222
Q ss_pred cccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Q 004960 154 RPHFADMQALLLKCLQDETSNRVRIAALKAIGS 186 (721)
Q Consensus 154 ~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~ 186 (721)
.+. +. ++..++.| .+..|+.++..++..
T Consensus 236 ~kr---i~-l~ewgl~d-Re~sv~~a~~d~ia~ 263 (885)
T COG5218 236 DKR---IL-LMEWGLLD-REFSVKGALVDAIAS 263 (885)
T ss_pred cce---eh-hhhhcchh-hhhhHHHHHHHHHHH
Confidence 222 22 66678888 888899988888764
No 215
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.19 E-value=2.7 Score=46.32 Aligned_cols=284 Identities=12% Similarity=0.085 Sum_probs=146.8
Q ss_pred HHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhc-----cccchHHHHHHHHHhhcC
Q 004960 397 AASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEE-----ILPFLDPLMGKLLAALEN 471 (721)
Q Consensus 397 ~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~-----~~~~~~~i~~~l~~~l~~ 471 (721)
.+...+|.++...+..+.+.+-..+-.++..+.+++..++..|-.++..++..++.. +....+-++..+...+++
T Consensus 567 i~ld~I~~~a~~~g~~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~s~~~lI~en~DYlv~sla~~L~~ 646 (1014)
T KOG4524|consen 567 IVLDSIGTIAAVMGEEFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADALNYGSPPHLIRENVDYLVNSLALRLNT 646 (1014)
T ss_pred hhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCCChHHHHHhhhHHHHHHHHHHhcc
Confidence 356678888888888887776666666677778888889999999999999988532 334456666666666664
Q ss_pred CChhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHH---HHhhch----hhccCCh
Q 004960 472 SPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLV---AESVGR----ARMEPIL 544 (721)
Q Consensus 472 ~~~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l---~~~~~~----~~~~~~~ 544 (721)
.... ..+-..+..+..-.+.+..|++.+++..+...+..-- . - .+..+++.+ ....+. +.+..+.
T Consensus 647 ~~~s--~~~~~Vl~vVl~~s~~~~i~~l~dvvq~i~~~lD~yH-~---~--~~~~~~~ll~s~ik~~~~~~~~~~il~~~ 718 (1014)
T KOG4524|consen 647 SGMS--PRVPDVLMVVLQYSDYGTIPNLKDVVQTIFKLLDYYH-G---Y--SCLQFFQLLHSIIKEMKKKYINDEILGHI 718 (1014)
T ss_pred CCCC--chhHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHhc-c---c--chhHHHHHHHHHHHHHhhccccchhhHHH
Confidence 3211 1222334444555556677888888877766653210 0 0 122222222 222221 0111111
Q ss_pred -HHHHHHHHhccCCCChhhHHHHHHHHHHHHHHcccCcccchhhhHHHHHhhc------cCCCCC--ccCCCCCcccccc
Q 004960 545 -PPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSC------NLDDGS--AVDIDGSDDENIN 615 (721)
Q Consensus 545 -~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~------~~~~~~--~~~~~~~~~~~~~ 615 (721)
++........++. +........+... .|...+.|....-. +..+++ .....+.+++. +
T Consensus 719 ~d~~~~~~~k~l~e-----~p~~~~e~~n~~~-------d~~~~l~~~~~e~~~~~~~~~~~dnee~~e~~~e~eden-s 785 (1014)
T KOG4524|consen 719 ADQHISQSTKVLNE-----LPTQVKELINDEN-------DLKDDLEPSNFEKDFASKLREPDDNEEPEEREEEVEDEN-S 785 (1014)
T ss_pred HHHHHHHHHHHhhc-----chhhHHHhhhhHH-------HHHHhhhhHHHHHHhhhhccCCCcccCcCCCCCCccccc-c
Confidence 1111111111110 1111122222221 23333333332211 111100 00000000000 0
Q ss_pred CCC-CCC-CCchhhh--hcccc-ceeeecchhhhHHHHHHHHHHHHH---HccccccchHHHHHHHHHhcccCCChhHHH
Q 004960 616 GFG-GVS-SDDEAHC--ERSVR-NISVRTGVLDEKAAATQALGLFAL---HTKSSYAPFLEESLKILVRHASYFHEDVRY 687 (721)
Q Consensus 616 ~~~-~~~-~~~~~~~--~~~~~-~~~~~~~~~~~k~~a~~~l~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~ 687 (721)
.+. +.. .++-.++ +..++ ..-+.+.....|..|+.++..... ..++.+.|.+.+.++.++..+.+.++-+..
T Consensus 786 ~~~d~ep~~~~qv~iv~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~ 865 (1014)
T KOG4524|consen 786 EYTDTEPILPDQVKIVLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQ 865 (1014)
T ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHH
Confidence 011 000 0000000 00111 113566677889999999987644 345778999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 004960 688 QAVFALKNILTAAH 701 (721)
Q Consensus 688 ~a~~~l~~l~~~~~ 701 (721)
.|.+++..+.+-++
T Consensus 866 ~a~~~i~~m~~~sg 879 (1014)
T KOG4524|consen 866 RAFSCIEQMGKYSG 879 (1014)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999888776543
No 216
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=96.14 E-value=1.7 Score=47.54 Aligned_cols=135 Identities=16% Similarity=0.170 Sum_probs=77.9
Q ss_pred HHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcC--c-----cccHhHHHHHHh----hhcCCChhhHhHHHH
Q 004960 291 IPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA--K-----HVFPPVFEFASV----SCQNASPKYREAAVT 359 (721)
Q Consensus 291 ~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~--~-----~~~~~i~~~l~~----~l~~~~~~~r~~al~ 359 (721)
+.++..+++++...... .....+..+.-.+..+..... . .+...+++++.+ .....+...+...+.
T Consensus 392 ~~~l~~l~~l~~~~~~~---~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Lk 468 (574)
T smart00638 392 EEILKALFELAESPEVQ---KQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLK 468 (574)
T ss_pred HHHHHHHHHHhcCcccc---ccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHH
Confidence 34556666666543211 123456666666776665332 1 112344444444 334456667888899
Q ss_pred HHHHHhhccHHHHHHhHHHHHHHHHhhc---CCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhcc--CCChH
Q 004960 360 AIGIISEGCAEWMKEKLESVLHIVLGAL---RDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALE--DESDE 434 (721)
Q Consensus 360 ~l~~i~~~~~~~~~~~l~~i~~~l~~~l---~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~--~~~~~ 434 (721)
+||++... ..++.+.+.+ ....+.+|.+|+++|.+++...+...++ .++..+. ..+++
T Consensus 469 aLGN~g~~----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~-------~l~~i~~n~~e~~E 531 (574)
T smart00638 469 ALGNAGHP----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQE-------VLLPIYLNRAEPPE 531 (574)
T ss_pred hhhccCCh----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHH-------HHHHHHcCCCCChH
Confidence 99988753 2222223333 2447899999999999998877653333 2333333 33577
Q ss_pred HHHHHHHHHHH
Q 004960 435 VKEKSYYALAA 445 (721)
Q Consensus 435 v~~~a~~al~~ 445 (721)
+|..|+..|..
T Consensus 532 vRiaA~~~lm~ 542 (574)
T smart00638 532 VRMAAVLVLME 542 (574)
T ss_pred HHHHHHHHHHh
Confidence 99888877653
No 217
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.09 E-value=1.2 Score=44.62 Aligned_cols=95 Identities=12% Similarity=0.143 Sum_probs=69.3
Q ss_pred hHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCC
Q 004960 353 YREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDES 432 (721)
Q Consensus 353 ~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~ 432 (721)
.-..|+..+-++++...-..+-.-..++..++++|.-.+..+.......|-.++-+......-.-.+++..|.+.+...+
T Consensus 279 LLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h 358 (791)
T KOG1222|consen 279 LLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQH 358 (791)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCC
Confidence 44567778888888776555555678999999999877777777777777777666544333334578888999988888
Q ss_pred hHHHHHHHHHHHHHH
Q 004960 433 DEVKEKSYYALAAFC 447 (721)
Q Consensus 433 ~~v~~~a~~al~~l~ 447 (721)
+..+...+..+-++.
T Consensus 359 ~dL~~~tl~LlfNlS 373 (791)
T KOG1222|consen 359 PDLRKATLMLLFNLS 373 (791)
T ss_pred HHHHHHHHHHhhhcc
Confidence 888887777776653
No 218
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.06 E-value=2.5 Score=44.77 Aligned_cols=109 Identities=18% Similarity=0.182 Sum_probs=82.5
Q ss_pred CHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHc--cccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhh
Q 004960 72 SPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAK--YAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETI 149 (721)
Q Consensus 72 ~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~--~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~ 149 (721)
.++..+++...++.+..+ +++.||...+++++.+.. ...+...++.+...+...+.+..+.+|..|+.++..+-...
T Consensus 79 e~DlV~~~f~hlLRg~Es-kdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~ 157 (892)
T KOG2025|consen 79 EEDLVAGTFYHLLRGTES-KDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDP 157 (892)
T ss_pred hhhHHHHHHHHHHhcccC-cchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCC
Confidence 456777777788887775 899999999999999987 44454567778888888888999999999999999887433
Q ss_pred hhcccccHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Q 004960 150 GQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIG 185 (721)
Q Consensus 150 ~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~ 185 (721)
.+.- -.+...+...++.+++++||.+|+.++.
T Consensus 158 ~dee----~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 158 KDEE----CPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred CCCc----ccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 2221 2344555555555599999999998874
No 219
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=96.05 E-value=1.4 Score=41.72 Aligned_cols=271 Identities=13% Similarity=0.103 Sum_probs=129.6
Q ss_pred CCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhc---cc--ccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhh
Q 004960 115 EWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQT---FR--PHFADMQALLLKCLQDETSNRVRIAALKAIGSFLE 189 (721)
Q Consensus 115 ~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~---~~--~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~ 189 (721)
.+.-++..+...+++-++-.|..|..|+..+.-..... .. .....++.++.+.+. ..+.+..++-++..+.-
T Consensus 146 ~~~LfleyLgkl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg---~~qlQY~SL~~iw~lTf 222 (432)
T COG5231 146 NYLLFLEYLGKLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVG---VKQLQYNSLIIIWILTF 222 (432)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhh---hhhhHHHHHHHHHHHhc
Confidence 34445555555666656677888888888775332110 00 011233334433332 24566666655543321
Q ss_pred hcCC-hhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCccc--chhhhHHHHHHHHHHhhc-CCCCChHH
Q 004960 190 FTND-GAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAP--LLGDSVKSIVHFSLEVSS-SHNLEPNT 265 (721)
Q Consensus 190 ~~~~-~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~--~~~~~~~~l~~~~~~~~~-~~~~~~~~ 265 (721)
.+. .+++.+....+..++..+..- ..+.+...++.++.+.....|+ .+.+.+.+=+..+.+.+. ...-++++
T Consensus 223 -~~~~aqdi~K~~dli~dli~iVk~~---~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel 298 (432)
T COG5231 223 -SKECAQDIDKMDDLINDLIAIVKER---AKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEEL 298 (432)
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHH
Confidence 111 122344445555555543322 2456777888888888875432 222222221222333332 33334444
Q ss_pred HHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCC-CCCCCCcHHHHHHHHHHHHHHHcCccccHhHHHHHHh
Q 004960 266 RHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEA-GEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASV 344 (721)
Q Consensus 266 r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~-~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~i~~~l~~ 344 (721)
+. -++.+..........+. .....+..+...+-+|.+. ..+|.|+. -++.+.+ + - -.++..+.+
T Consensus 299 ~~-di~~i~s~l~~~~k~l~---~fD~Y~~ELdsg~l~wSp~H~~~dFWs~------N~d~l~k---d-n-y~i~k~L~~ 363 (432)
T COG5231 299 VI-DIERIRSRLVQNTKKLC---IFDNYLNELDSGRLEWSPYHHKKDFWST------NLDMLIK---D-N-YEIVKVLKK 363 (432)
T ss_pred HH-HHHHHHHHHHhhhhhhh---HHHHHHHHHhhCcccCCCcccccCchhh------hHHHHhh---h-h-HHHHHHHHH
Confidence 43 34555544432222111 1112222232222222211 11223321 1111111 0 0 124455555
Q ss_pred hhcCCChh-hHhHHHHHHHHHhhccHHHHHHhHH-HHHHHHHhhcCCCCHhHHHHHHHHHHHHHh
Q 004960 345 SCQNASPK-YREAAVTAIGIISEGCAEWMKEKLE-SVLHIVLGALRDPEQFVRGAASFALGQFAE 407 (721)
Q Consensus 345 ~l~~~~~~-~r~~al~~l~~i~~~~~~~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 407 (721)
.+++.+.. ....|+.=++.+.+..|+...-... ..=..++..++++++.||..|+.++..+..
T Consensus 364 ~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 364 YLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 55554444 3455777788888776653322111 233577889999999999999999876643
No 220
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=96.02 E-value=1.6 Score=48.31 Aligned_cols=124 Identities=15% Similarity=0.198 Sum_probs=72.0
Q ss_pred ccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCC---CHhHHHHHHHHHHHHHhhhh
Q 004960 334 VFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDP---EQFVRGAASFALGQFAEYLQ 410 (721)
Q Consensus 334 ~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~---~~~vr~~a~~~l~~l~~~~~ 410 (721)
+.+.+.+.+.......+...+..++.+||++... ..++.+.+.+.+. ...+|.+|++++.++....+
T Consensus 487 ~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~----------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~ 556 (618)
T PF01347_consen 487 YVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP----------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP 556 (618)
T ss_dssp GTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G----------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H
T ss_pred HHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc----------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc
Confidence 3444555555455566778899999999999742 4566666776655 78999999999999877765
Q ss_pred HHHHHhhhhHHHHHHHhccC--CChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhc-CCChhHHHHHHHH
Q 004960 411 PEIVSHYESVLPCILNALED--ESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALE-NSPRNLQETCMSA 483 (721)
Q Consensus 411 ~~~~~~~~~~l~~l~~~l~~--~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~-~~~~~v~~~~l~~ 483 (721)
..+. +.++..+.+ .+.++|.+|+..|..- -+. ..++..+...+. +++..|...+...
T Consensus 557 ~~v~-------~~l~~I~~n~~e~~EvRiaA~~~lm~~---~P~------~~~l~~i~~~l~~E~~~QV~sfv~S~ 616 (618)
T PF01347_consen 557 EKVR-------EILLPIFMNTTEDPEVRIAAYLILMRC---NPS------PSVLQRIAQSLWNEPSNQVASFVYSH 616 (618)
T ss_dssp HHHH-------HHHHHHHH-TTS-HHHHHHHHHHHHHT------------HHHHHHHHHHHTT-S-HHHHHHHHHH
T ss_pred HHHH-------HHHHHHhcCCCCChhHHHHHHHHHHhc---CCC------HHHHHHHHHHHhhCchHHHHHHHHHh
Confidence 4322 223333333 3467998887666532 111 134444444443 4456666655443
No 221
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=95.96 E-value=1.1 Score=44.31 Aligned_cols=140 Identities=18% Similarity=0.284 Sum_probs=93.1
Q ss_pred ccHhHHHHHHhhhcCCChhhHhHH-HHHHHHHhhccHHHHH----HhHHHHHHHHHhhcCC---CCHhHHHHHHHHHHHH
Q 004960 334 VFPPVFEFASVSCQNASPKYREAA-VTAIGIISEGCAEWMK----EKLESVLHIVLGALRD---PEQFVRGAASFALGQF 405 (721)
Q Consensus 334 ~~~~i~~~l~~~l~~~~~~~r~~a-l~~l~~i~~~~~~~~~----~~l~~i~~~l~~~l~d---~~~~vr~~a~~~l~~l 405 (721)
+++++++.+..--++..+..|++- +.+++.+....+..+. ..++.++...+.++++ +.|..|..-...|..+
T Consensus 68 ~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i 147 (319)
T PF08767_consen 68 FIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAI 147 (319)
T ss_dssp THHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHH
Confidence 455666644443444556677764 5566666665443333 3334444444445542 4799999999999999
Q ss_pred HhhhhHHHH----HhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhh---c-----cccchHHHHHHHHHhhcCCC
Q 004960 406 AEYLQPEIV----SHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGE---E-----ILPFLDPLMGKLLAALENSP 473 (721)
Q Consensus 406 ~~~~~~~~~----~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~---~-----~~~~~~~i~~~l~~~l~~~~ 473 (721)
.+.+.+.+. +.+..++..+.-++++++..|...++.++..++..... . ...|+-.++..++.++.+..
T Consensus 148 ~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~ 227 (319)
T PF08767_consen 148 NEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSD 227 (319)
T ss_dssp HHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence 998766554 35678888999999999999999999999999988754 1 22355566666666666653
No 222
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.85 E-value=0.037 Score=48.39 Aligned_cols=94 Identities=21% Similarity=0.352 Sum_probs=79.8
Q ss_pred hhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHH---hhh
Q 004960 417 YESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAA---AEQ 493 (721)
Q Consensus 417 ~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~---~~~ 493 (721)
+...+|.+..+|.+.+-.-+.-|-..+..++...++.+.|.+++++..|...+.+.+.++...++.++..++.. .|.
T Consensus 112 y~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~ 191 (262)
T KOG3961|consen 112 YCPYLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGA 191 (262)
T ss_pred chHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccch
Confidence 45677888888887766677778888999999999999999999999999999999999999999888877654 458
Q ss_pred cchhhHHHHHHHHHHHH
Q 004960 494 AFIPYAERVLELLKIFM 510 (721)
Q Consensus 494 ~~~~~~~~i~~~l~~~l 510 (721)
.+.||+-+++|.+..+=
T Consensus 192 aLVPfYRQlLp~~n~~k 208 (262)
T KOG3961|consen 192 ALVPFYRQLLPVLNTFK 208 (262)
T ss_pred hhhhHHHHhhhhhhhhc
Confidence 89999999999876543
No 223
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=95.84 E-value=0.32 Score=49.50 Aligned_cols=152 Identities=14% Similarity=0.164 Sum_probs=100.5
Q ss_pred HHHHHHHHHcC-ccccHhHHHHHHhhhc----CCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhc--------
Q 004960 321 EVIDTMALNLA-KHVFPPVFEFASVSCQ----NASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGAL-------- 387 (721)
Q Consensus 321 ~~l~~l~~~~~-~~~~~~i~~~l~~~l~----~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l-------- 387 (721)
++|..+...-| ..++|.+..++.+... ..+...-...+.+..++..+-.-++.+|+..++|.++.|+
T Consensus 226 eAL~sL~TDsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l~~~ 305 (576)
T KOG2549|consen 226 EALQSLETDSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLR 305 (576)
T ss_pred HHHHhhccCccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccchhhHHHHHhhHHHHhhhhhhccCC
Confidence 34455554444 3344555555544332 1344455556777777777767788899999999888886
Q ss_pred --CCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCC--hHHHHHHHHHHHHHHHhh-hhccccchHHHH
Q 004960 388 --RDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDES--DEVKEKSYYALAAFCEDM-GEEILPFLDPLM 462 (721)
Q Consensus 388 --~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~--~~v~~~a~~al~~l~~~~-~~~~~~~~~~i~ 462 (721)
.|.++.+|.-|+..+..++..++......-+-++..+.+.+.|+. ....-.++..|..+.... ..-+.|.+....
T Consensus 306 p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~lg~~~I~~~ilp~L~~~~ 385 (576)
T KOG2549|consen 306 PELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAIAGLSELGHEVIRTVILPNLKEYN 385 (576)
T ss_pred ccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHhhhhhhhheeccchHHHH
Confidence 267899999999999999999987666666778888888888873 224445555555554432 334556677666
Q ss_pred HHHHHhhcCC
Q 004960 463 GKLLAALENS 472 (721)
Q Consensus 463 ~~l~~~l~~~ 472 (721)
..+...+...
T Consensus 386 ~~l~~~l~~~ 395 (576)
T KOG2549|consen 386 ERLQSVLDVE 395 (576)
T ss_pred HHhhhhcccc
Confidence 6666655443
No 224
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=95.84 E-value=0.84 Score=49.89 Aligned_cols=152 Identities=18% Similarity=0.236 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHc--C-ccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhc-cHH-------HHHHhHHHHHHHHHhhc
Q 004960 319 AAEVIDTMALNL--A-KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEG-CAE-------WMKEKLESVLHIVLGAL 387 (721)
Q Consensus 319 a~~~l~~l~~~~--~-~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~-~~~-------~~~~~l~~i~~~l~~~l 387 (721)
+..++..+.... + ...+..+++.+......+....+..++.++++++.. |.. ....+++.+...+-...
T Consensus 376 a~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~ 455 (574)
T smart00638 376 AAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAV 455 (574)
T ss_pred HHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHH
Confidence 334444444332 2 334444444433322234567899999999999863 221 11233334444444444
Q ss_pred CCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHH
Q 004960 388 RDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLA 467 (721)
Q Consensus 388 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~ 467 (721)
+..+...+..++.+||++..... ..++..+++ +-...+..+|..|++||..++...+.. +-+.+.+
T Consensus 456 ~~~~~~~~~~~LkaLGN~g~~~~---i~~l~~~l~----~~~~~~~~iR~~Av~Alr~~a~~~p~~-------v~~~l~~ 521 (574)
T smart00638 456 SKGDEEEIQLYLKALGNAGHPSS---IKVLEPYLE----GAEPLSTFIRLAAILALRNLAKRDPRK-------VQEVLLP 521 (574)
T ss_pred hcCCchheeeHHHhhhccCChhH---HHHHHHhcC----CCCCCCHHHHHHHHHHHHHHHHhCchH-------HHHHHHH
Confidence 55566677889999998765421 122222211 222345689999999999888766553 3334445
Q ss_pred hhcCC--ChhHHHHHHHHH
Q 004960 468 ALENS--PRNLQETCMSAI 484 (721)
Q Consensus 468 ~l~~~--~~~v~~~~l~~l 484 (721)
++.+. +.++|..|+..+
T Consensus 522 i~~n~~e~~EvRiaA~~~l 540 (574)
T smart00638 522 IYLNRAEPPEVRMAAVLVL 540 (574)
T ss_pred HHcCCCCChHHHHHHHHHH
Confidence 55443 678888887554
No 225
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=95.83 E-value=0.26 Score=51.81 Aligned_cols=188 Identities=19% Similarity=0.221 Sum_probs=132.0
Q ss_pred HHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHH
Q 004960 247 SIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTM 326 (721)
Q Consensus 247 ~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l 326 (721)
.+++.+++.+... +..+|...+.-+..++++-.. +.+-.++++.+...+.+.+ ...|.....++..+
T Consensus 330 ~i~p~l~kLF~~~--Dr~iR~~LL~~i~~~i~~Lt~----~~~~d~I~phv~~G~~DTn-------~~Lre~Tlksm~~L 396 (690)
T KOG1243|consen 330 RIIPVLLKLFKSP--DRQIRLLLLQYIEKYIDHLTK----QILNDQIFPHVALGFLDTN-------ATLREQTLKSMAVL 396 (690)
T ss_pred chhhhHHHHhcCc--chHHHHHHHHhHHHHhhhcCH----HhhcchhHHHHHhhcccCC-------HHHHHHHHHHHHHH
Confidence 3445555555555 677888877776666654322 2233456666666565544 57888888899999
Q ss_pred HHHcCcccc-HhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHH-HHHHhhcCCCCHhHHHHHHHHHHH
Q 004960 327 ALNLAKHVF-PPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVL-HIVLGALRDPEQFVRGAASFALGQ 404 (721)
Q Consensus 327 ~~~~~~~~~-~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~-~~l~~~l~d~~~~vr~~a~~~l~~ 404 (721)
+..++...+ ..++.++...-.+++...|--...++|.++........ ..++ ..+...++|+-+.-|.++.+.+..
T Consensus 397 a~kL~~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R---~~vL~~aftralkdpf~paR~a~v~~l~a 473 (690)
T KOG1243|consen 397 APKLSKRNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVR---KRVLASAFTRALKDPFVPARKAGVLALAA 473 (690)
T ss_pred HhhhchhhhcHHHHHHHHhhCccccCcccccceeeecccccccchhhh---ccccchhhhhhhcCCCCCchhhhhHHHhh
Confidence 988886544 56777777666677777888888888888876433221 1222 344556889999999999999888
Q ss_pred HHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhh
Q 004960 405 FAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGE 452 (721)
Q Consensus 405 l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~ 452 (721)
-.+.+.. .+.-.+++|.+.-...|++..||..|..++..+.....+
T Consensus 474 t~~~~~~--~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~ 519 (690)
T KOG1243|consen 474 TQEYFDQ--SEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEK 519 (690)
T ss_pred cccccch--hhhhhhccccccccccCcccchhhHHHHHHHHHHhhhhh
Confidence 7777653 345568888888888899999999999999988877654
No 226
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.79 E-value=0.18 Score=49.88 Aligned_cols=150 Identities=13% Similarity=0.094 Sum_probs=78.7
Q ss_pred HHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhcc----CCChHHHHHHHHHHHHHHHhhhhcc
Q 004960 379 VLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALE----DESDEVKEKSYYALAAFCEDMGEEI 454 (721)
Q Consensus 379 i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~----~~~~~v~~~a~~al~~l~~~~~~~~ 454 (721)
.+..+++.++.++..++..|+..++.+....+.........+++.+++.+. +++..++..++.++..++..-.-..
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~ 185 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQ 185 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHH
Confidence 455667788888999999999999999887665433322344444444444 3445577888899998875432111
Q ss_pred ccchHHHHHHHHHhh-----cCC--ChhHHHHHHHHHHHHHHH--hhhcchhhHHHHHHHHHHHHhccCchhhhhHHHHH
Q 004960 455 LPFLDPLMGKLLAAL-----ENS--PRNLQETCMSAIGSVAAA--AEQAFIPYAERVLELLKIFMVLTNDEDLRSRARAT 525 (721)
Q Consensus 455 ~~~~~~i~~~l~~~l-----~~~--~~~v~~~~l~~l~~l~~~--~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~ 525 (721)
.-+-...++.+.+++ .++ ...++.+++-|+-.+.-. .-+.+.... ++|.+..++.....+ .+.+.++
T Consensus 186 ~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~--~i~~L~~i~~~~~KE--KvvRv~l 261 (312)
T PF03224_consen 186 VFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKY--LIPLLADILKDSIKE--KVVRVSL 261 (312)
T ss_dssp HHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTS--HHHHHHHHHHH--SH--HHHHHHH
T ss_pred HHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccc--hHHHHHHHHHhcccc--hHHHHHH
Confidence 111155666666666 222 244555665555433211 112222222 778777777654322 2333455
Q ss_pred HHHHHHH
Q 004960 526 ELLGLVA 532 (721)
Q Consensus 526 ~~l~~l~ 532 (721)
.++-.+.
T Consensus 262 a~l~Nl~ 268 (312)
T PF03224_consen 262 AILRNLL 268 (312)
T ss_dssp HHHHHTT
T ss_pred HHHHHHH
Confidence 5555554
No 227
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.78 E-value=5.5 Score=46.51 Aligned_cols=119 Identities=18% Similarity=0.243 Sum_probs=82.8
Q ss_pred HHHHHHHHHhhcCC--ChhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhc
Q 004960 459 DPLMGKLLAALENS--PRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVG 536 (721)
Q Consensus 459 ~~i~~~l~~~l~~~--~~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~ 536 (721)
.+++..+.+..-.. ...+-..+..+++....+.++++.|+..++ +..+-+...+.|-.++..+..+....|
T Consensus 1501 ~p~v~ql~n~~~e~~~~~~v~~~li~~i~~~~~a~~~d~~pl~~k~-------l~~trss~~~~r~~ai~~~~~l~~~lg 1573 (1621)
T KOG1837|consen 1501 YPLVSQLVNVLLEFYASDIVSKLLIAEIASDSVADKDDLKPLNQKI-------LKKTRSSSRKARYLAIIQVKLLYTKLG 1573 (1621)
T ss_pred hhhHHHHHHhhccchhhhHHHHHHHHHHHhhccCChhhhHHHHHHH-------HHHhccccHHHHHHHHHHHHHHHHHhc
Confidence 34555555533222 344556677777777777666655554443 333333444566678888888887776
Q ss_pred hhhccCChHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHcccCcccch
Q 004960 537 RARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYL 585 (721)
Q Consensus 537 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l 585 (721)
. ...++++++++.+.+.+.|++.++...+...+..+=..+|+.|..|+
T Consensus 1574 e-~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q~e~~lGE~l~~y~ 1621 (1621)
T KOG1837|consen 1574 E-NVIVLLPQSIPFLAELMEDEDDEVECLCQKLIRQLEEVLGEPLQSYL 1621 (1621)
T ss_pred c-hhHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhhhhcC
Confidence 4 77788999999999999998889988888888888889999777663
No 228
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=95.78 E-value=0.062 Score=41.28 Aligned_cols=74 Identities=28% Similarity=0.301 Sum_probs=62.1
Q ss_pred HHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhc
Q 004960 379 VLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEE 453 (721)
Q Consensus 379 i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~ 453 (721)
.+...+..++|+.+.||..++..|.++.+... ......+.++..++..++|+++-|--+|+.+|..++...+..
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~ 77 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE 77 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH
Confidence 34556777899999999999999999998765 123456889999999999999999999999999999887653
No 229
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.74 E-value=5.7 Score=46.37 Aligned_cols=96 Identities=16% Similarity=0.161 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHhccC
Q 004960 435 VKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTN 514 (721)
Q Consensus 435 v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~ 514 (721)
|-.....++.+.....+.++. ++...+..-..+..+..|-.++..+..+....|+.+.+.+++++|++.++++..
T Consensus 1520 v~~~li~~i~~~~~a~~~d~~----pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~- 1594 (1621)
T KOG1837|consen 1520 VSKLLIAEIASDSVADKDDLK----PLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDE- 1594 (1621)
T ss_pred HHHHHHHHHHhhccCChhhhH----HHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhh-
Confidence 444444445544444444443 444444444556678889999999999999999999999999999999998653
Q ss_pred chhhhhHHHHHHHHHHHHHhhch
Q 004960 515 DEDLRSRARATELLGLVAESVGR 537 (721)
Q Consensus 515 ~~~~~~~~~~~~~l~~l~~~~~~ 537 (721)
+..+...+-..+..+-...|.
T Consensus 1595 --~~~Ve~~~q~li~q~e~~lGE 1615 (1621)
T KOG1837|consen 1595 --DDEVECLCQKLIRQLEEVLGE 1615 (1621)
T ss_pred --HHHHHHHHHHHHHHHHHHhch
Confidence 333444455555555555553
No 230
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.71 E-value=6.6 Score=46.87 Aligned_cols=299 Identities=15% Similarity=0.113 Sum_probs=164.5
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCC-ChHHHHHHHH--HHHHHHHhhhh-----cccc--chHHHH
Q 004960 393 FVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDE-SDEVKEKSYY--ALAAFCEDMGE-----EILP--FLDPLM 462 (721)
Q Consensus 393 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~-~~~v~~~a~~--al~~l~~~~~~-----~~~~--~~~~i~ 462 (721)
.+-..+....|.++.+.++.++-..-..++..++..+.. ...|+.++.. ++-.+.+.+.+ .+.| +.....
T Consensus 799 s~Idta~~lfg~vfp~v~~k~~~~ile~~~esi~~sk~~r~qsV~~~a~t~~al~s~lk~l~e~~~~~~lg~e~v~~~~~ 878 (2067)
T KOG1822|consen 799 SLIDTAVSLFGSVFPHVNNKIRLSILEHFPESIKQSKSARQQSVQVNAVTWQALLSALKYLAEFKGATSLGPEEVRSSAL 878 (2067)
T ss_pred HHHHHHHHHHHHhccCccHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHH
Confidence 455666777777776666655443333344444333332 3345555555 66666555422 2222 222333
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhccC
Q 004960 463 GKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEP 542 (721)
Q Consensus 463 ~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 542 (721)
..+...+..+++..|..+.++++.++...++. +|...+...+..-+....+ ...|..-.-.+|.+-+.+|.-.-..
T Consensus 879 ~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~--~f~a~~aq~~fdklas~~d--~i~R~ghslalg~lhkyvgs~~s~q 954 (2067)
T KOG1822|consen 879 TLIVNSLINPNPKLRCAAAEALARLAQVVGSA--PFVASLAQNSFDKLASARD--PITRTGHSLALGCLHKYVGSIGSGQ 954 (2067)
T ss_pred HHHhhhhccCChHHHHHHHHHHHHHHHhcccc--chHHHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHhccCCCCch
Confidence 44556667778999999999999999988754 4555555555555544333 3344444555666665555322233
Q ss_pred ChHHHHHHHHhccCCC-ChhhHHHHHHHHHHHHHHcccCcccchhhhHHHHHhhccCCCCCccCC--------CCCccc-
Q 004960 543 ILPPFVEAAISGFGLE-FSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDI--------DGSDDE- 612 (721)
Q Consensus 543 ~~~~i~~~l~~~l~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~--------~~~~~~- 612 (721)
+...-+..++..-+|+ .|.|+...+.++.-+....|+-+..|+...+..++..+-..++...++ ..++++
T Consensus 955 hl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~ 1034 (2067)
T KOG1822|consen 955 HLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDED 1034 (2067)
T ss_pred hcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhHH
Confidence 4444444555545555 568999999999999998898888888888877777665544321111 111111
Q ss_pred -cccC----CCCCCCCchhh-hh---ccccceeeecchhhhHHHHHHHHHHHHHHccccccchHHHHHHHHHhcccCCCh
Q 004960 613 -NING----FGGVSSDDEAH-CE---RSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVRHASYFHE 683 (721)
Q Consensus 613 -~~~~----~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 683 (721)
-++. ..++...|... .. .....+.+..+..-+...|+.++-.+....+.. -..+.++..+..++...+-
T Consensus 1035 alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~--~n~~~lV~~L~~~l~s~~~ 1112 (2067)
T KOG1822|consen 1035 ALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRH--VNLDSLVLQLCSLLSSSYL 1112 (2067)
T ss_pred HHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchh--ccHHHHHHHHHHHhcchhh
Confidence 0110 11111100000 00 000011233444557788888888886666542 2356666666666665555
Q ss_pred hHHHHHHHHHHHHH
Q 004960 684 DVRYQAVFALKNIL 697 (721)
Q Consensus 684 ~vr~~a~~~l~~l~ 697 (721)
..|.++..++..++
T Consensus 1113 i~r~~~~~clrql~ 1126 (2067)
T KOG1822|consen 1113 ILRRASFSCLRQLV 1126 (2067)
T ss_pred hhhhhHHhhhhHHh
Confidence 66666666555543
No 231
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=95.55 E-value=1.2 Score=47.42 Aligned_cols=135 Identities=13% Similarity=0.219 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCC
Q 004960 93 APVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDET 172 (721)
Q Consensus 93 ~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~l~~~~ 172 (721)
..++-.+.+-...|.++..++..-..++|.|...+++.+...+..++..+..+.+..+.. -.-..++|.+.+......
T Consensus 364 ~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~--~vk~~ilP~l~~l~~~tt 441 (700)
T KOG2137|consen 364 KQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVP--FVKQAILPRLKNLAFKTT 441 (700)
T ss_pred ccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHH--HHHHHHHHHhhcchhccc
Confidence 344444444445555554444455678888888888888888889999998888776532 223566777776644447
Q ss_pred CHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCc
Q 004960 173 SNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESP 237 (721)
Q Consensus 173 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~ 237 (721)
+..++..++-|+..+++..+. ...++.+... .++++..++.+......+...++-..
T Consensus 442 ~~~vkvn~L~c~~~l~q~lD~-------~~v~d~~lpi-~~~~~~~dp~iv~~~~~i~~~l~~~~ 498 (700)
T KOG2137|consen 442 NLYVKVNVLPCLAGLIQRLDK-------AAVLDELLPI-LKCIKTRDPAIVMGFLRIYEALALII 498 (700)
T ss_pred chHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHH-HHHhcCCCcHHHHHHHHHHHHHHhhc
Confidence 888999999999988865421 1223323222 22566678888777776666665443
No 232
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=0.11 Score=52.64 Aligned_cols=115 Identities=18% Similarity=0.226 Sum_probs=87.5
Q ss_pred hcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcC-CCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHH
Q 004960 346 CQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALR-DPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCI 424 (721)
Q Consensus 346 l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l 424 (721)
.++.+-.+|.+|+.++|-++-.-++ .++..++.|. +-|+.||...+.+||..|...+.. .--+++..
T Consensus 561 vsD~nDDVrRAAViAlGfvc~~D~~--------~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~---~a~diL~~- 628 (926)
T COG5116 561 VSDGNDDVRRAAVIALGFVCCDDRD--------LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK---VATDILEA- 628 (926)
T ss_pred cccCchHHHHHHHHheeeeEecCcc--------hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH---HHHHHHHH-
Confidence 4566778999999999988754322 2333344444 558999999999999988876642 22233333
Q ss_pred HHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCCh
Q 004960 425 LNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPR 474 (721)
Q Consensus 425 ~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~ 474 (721)
...|++..||..|+.+++.+.-.+.+.+.|.+..|...+.+++.+...
T Consensus 629 --L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~Khe 676 (926)
T COG5116 629 --LMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDKHE 676 (926)
T ss_pred --HhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhhhH
Confidence 346888899999999999999999999999999999999999887654
No 233
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.45 E-value=4.3 Score=43.02 Aligned_cols=137 Identities=18% Similarity=0.137 Sum_probs=92.8
Q ss_pred CChhHHHHHHHHHHHhhhhhhcCCCHHHHHHHHH---HHHHHHhhcCCHHHHHHHHHHHHHHHcccc---CCCCCcchHH
Q 004960 48 KTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQ---SLIESITLEHSAPVRRASANVVSIIAKYAV---PAGEWPDLLP 121 (721)
Q Consensus 48 ~~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i~~---~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~---~~~~~~~ll~ 121 (721)
.|..||..|+.++-+...-.-+....+..+.+.+ ..+..|.+++-+.||..+..-+..+....| |.+...+++.
T Consensus 186 ~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~ 265 (1005)
T KOG1949|consen 186 RNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTILIDLLK 265 (1005)
T ss_pred CchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 5789999999999888765444444455555443 223334456889999988888877765432 3334445555
Q ss_pred HHHHhcc-CCcHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHh
Q 004960 122 FLFQFSQ-SEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSF 187 (721)
Q Consensus 122 ~l~~~l~-~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l 187 (721)
.+..-+. +...++|.+.+..+..+.... .-.+.+..++|.+-..+.| .+..||.++...+..+
T Consensus 266 kI~d~~a~dt~s~VR~svf~gl~~~l~np--~sh~~le~~Lpal~~~l~D-~se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 266 KITDELAFDTSSDVRCSVFKGLPMILDNP--LSHPLLEQLLPALRYSLHD-NSEKVRVAFVDMLLKI 329 (1005)
T ss_pred HHHHHhhhccchheehhHhcCcHHHHcCc--cchhHHHHHHHhcchhhhc-cchhHHHHHHHHHHHH
Confidence 5555443 233477778887777776432 2245678888888888888 8999999999988765
No 234
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=95.35 E-value=0.42 Score=52.84 Aligned_cols=149 Identities=16% Similarity=0.230 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHcC---ccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHH----------HH----HhHHHHHH
Q 004960 319 AAEVIDTMALNLA---KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEW----------MK----EKLESVLH 381 (721)
Q Consensus 319 a~~~l~~l~~~~~---~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~----------~~----~~l~~i~~ 381 (721)
+...+..+..... .+++..+.+.+.......+...+.+|+.+++.++...... .. .+.+.+..
T Consensus 414 a~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~ 493 (618)
T PF01347_consen 414 AAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQ 493 (618)
T ss_dssp HHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHH
T ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHH
Confidence 3445555544332 2333434444332222345678899999999998653211 11 12333344
Q ss_pred HHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCC---ChHHHHHHHHHHHHHHHhhhhccccch
Q 004960 382 IVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDE---SDEVKEKSYYALAAFCEDMGEEILPFL 458 (721)
Q Consensus 382 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~---~~~v~~~a~~al~~l~~~~~~~~~~~~ 458 (721)
.+.......+..-+..++.+||++... ..++.+...+.+. +..+|..|++||..+....+.
T Consensus 494 ~l~~~~~~~~~~~~~~~LkaLgN~g~~----------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~------ 557 (618)
T PF01347_consen 494 ELKEAVSRGDEEEKIVYLKALGNLGHP----------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPE------ 557 (618)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHT-G----------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HH------
T ss_pred HHHHHhhccCHHHHHHHHHHhhccCCc----------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcH------
Confidence 444444566778888999999987632 4455555555554 567999999999977544433
Q ss_pred HHHHHHHHHhhcCC--ChhHHHHHHHHH
Q 004960 459 DPLMGKLLAALENS--PRNLQETCMSAI 484 (721)
Q Consensus 459 ~~i~~~l~~~l~~~--~~~v~~~~l~~l 484 (721)
.+.+.+.+++.+. +.++|.+|+..+
T Consensus 558 -~v~~~l~~I~~n~~e~~EvRiaA~~~l 584 (618)
T PF01347_consen 558 -KVREILLPIFMNTTEDPEVRIAAYLIL 584 (618)
T ss_dssp -HHHHHHHHHHH-TTS-HHHHHHHHHHH
T ss_pred -HHHHHHHHHhcCCCCChhHHHHHHHHH
Confidence 3455556666554 577888887554
No 235
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=95.27 E-value=3.5 Score=40.91 Aligned_cols=71 Identities=17% Similarity=0.253 Sum_probs=56.1
Q ss_pred HHHHHHHHhhcCCC-CHhHHHHHHHHHHHHHhhhhHHHHHhhh--hHHHHHHHhccCCChHHHHHHHHHHHHHHH
Q 004960 377 ESVLHIVLGALRDP-EQFVRGAASFALGQFAEYLQPEIVSHYE--SVLPCILNALEDESDEVKEKSYYALAAFCE 448 (721)
Q Consensus 377 ~~i~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~l~~l~~~l~~~~~~v~~~a~~al~~l~~ 448 (721)
-+++..+++.|... +|.+-..||.=+|.+.+..|.. ...+. +.=..+++.++.++++||-+|+.|+..++.
T Consensus 365 yellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~g-k~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 365 YELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEG-KAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchH-hHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 36788888888744 5999999999999999998653 22222 445677888999999999999999988764
No 236
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=95.18 E-value=0.71 Score=39.16 Aligned_cols=99 Identities=12% Similarity=0.064 Sum_probs=73.9
Q ss_pred hcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhh--hhHHHH
Q 004960 346 CQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY--ESVLPC 423 (721)
Q Consensus 346 l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~~l~~ 423 (721)
+.+++|...-.-+..+..=.. .-...+..|.+.+.+.+|.|...|+..|..+.++++..+...+ ..++..
T Consensus 13 l~~~dw~~il~icD~I~~~~~--------~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~e 84 (144)
T cd03568 13 LTSENWGLILDVCDKVKSDEN--------GAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQE 84 (144)
T ss_pred CCCcCHHHHHHHHHHHhcCCc--------cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHH
Confidence 445677555544444433211 1235677788889999999999999999999999998777543 577888
Q ss_pred HHHhccC-CChHHHHHHHHHHHHHHHhhhh
Q 004960 424 ILNALED-ESDEVKEKSYYALAAFCEDMGE 452 (721)
Q Consensus 424 l~~~l~~-~~~~v~~~a~~al~~l~~~~~~ 452 (721)
+.+.+.+ .+..|+..++..+......++.
T Consensus 85 L~kl~~~~~~~~Vk~kil~li~~W~~~f~~ 114 (144)
T cd03568 85 LKKLINDRVHPTVKEKLREVVKQWADEFKN 114 (144)
T ss_pred HHHHhcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 8887777 5788999999999999888763
No 237
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=95.13 E-value=0.29 Score=48.79 Aligned_cols=129 Identities=13% Similarity=0.163 Sum_probs=84.1
Q ss_pred HHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCC-------ChHHHHHHHHHH
Q 004960 371 WMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDE-------SDEVKEKSYYAL 443 (721)
Q Consensus 371 ~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~-------~~~v~~~a~~al 443 (721)
....++..+.. .+.+.+...|..|+..|.. . +.+.+++|.++..+.+. +..........+
T Consensus 175 Elq~yf~~It~----a~~~~~~~~r~~aL~sL~t---D------~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v 241 (343)
T cd08050 175 ELQLYFEEITE----ALVGSNEEKRREALQSLRT---D------PGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMV 241 (343)
T ss_pred HHHHHHHHHHH----HHhCCCHHHHHHHHHHhcc---C------CCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHH
Confidence 34444444444 4445677788777766553 1 23445555555444332 233344455555
Q ss_pred HHHHHhhhhccccchHHHHHHHHHhhcC----------CChhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHhc
Q 004960 444 AAFCEDMGEEILPFLDPLMGKLLAALEN----------SPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVL 512 (721)
Q Consensus 444 ~~l~~~~~~~~~~~~~~i~~~l~~~l~~----------~~~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~ 512 (721)
..++.+-.-.+.+|+..+++.++.++-. +.+.+|+.+...++.++...+.......+.+...+.+.+..
T Consensus 242 ~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d 320 (343)
T cd08050 242 RALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLD 320 (343)
T ss_pred HHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcC
Confidence 5555555667889999999999988733 23689999999999999999887777777788777766643
No 238
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=95.11 E-value=5.7 Score=42.49 Aligned_cols=173 Identities=12% Similarity=0.107 Sum_probs=108.7
Q ss_pred CChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcC-ccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhh
Q 004960 288 KLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA-KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISE 366 (721)
Q Consensus 288 ~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~ 366 (721)
.|...+++.+.+.+...+. ....-.-.+-++.+.+..+ +++...+++.+...+++.+....+.++..+..+++
T Consensus 345 ~~~~~~~p~l~pi~~~~~~------~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e 418 (700)
T KOG2137|consen 345 EFGPKMLPALKPIYSASDP------KQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAE 418 (700)
T ss_pred hhhhhhhHHHHHHhccCCc------ccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHH
Confidence 4566677777777765331 1233334455566677666 56778999999999999999999999999999998
Q ss_pred ccHHHHHHhHHHHHHHHHh-hcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHH
Q 004960 367 GCAEWMKEKLESVLHIVLG-ALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAA 445 (721)
Q Consensus 367 ~~~~~~~~~l~~i~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~ 445 (721)
..+.... -..++|.+.. .++..+..|+..++-|++.+.+.+.. ...++ .+..+.+..+..++.+..........
T Consensus 419 ~iD~~~v--k~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~--~~v~d-~~lpi~~~~~~~dp~iv~~~~~i~~~ 493 (700)
T KOG2137|consen 419 SIDVPFV--KQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDK--AAVLD-ELLPILKCIKTRDPAIVMGFLRIYEA 493 (700)
T ss_pred hccHHHH--HHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHH--HHhHH-HHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 8763222 1355565554 44578999999999999999966532 12233 34445555666666666655555555
Q ss_pred HHHhhhhccccchHHHHHHHHHhhcC
Q 004960 446 FCEDMGEEILPFLDPLMGKLLAALEN 471 (721)
Q Consensus 446 l~~~~~~~~~~~~~~i~~~l~~~l~~ 471 (721)
++-.......-..+.+++.+..+...
T Consensus 494 l~~~~~~g~ev~~~~VlPlli~ls~~ 519 (700)
T KOG2137|consen 494 LALIIYSGVEVMAENVLPLLIPLSVA 519 (700)
T ss_pred HHhhcccceeeehhhhhhhhhhhhhc
Confidence 44333221122234455555444333
No 239
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=95.10 E-value=0.96 Score=42.19 Aligned_cols=149 Identities=15% Similarity=0.195 Sum_probs=81.7
Q ss_pred HHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCC------ChHHHHHHHHHHH
Q 004960 371 WMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDE------SDEVKEKSYYALA 444 (721)
Q Consensus 371 ~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~------~~~v~~~a~~al~ 444 (721)
.+.-|++.++..+ ++..+...|.+|+.+|..= .-+++++|.++..+.+. +-.+-........
T Consensus 194 ELq~YF~kvisal---~dEs~~~~r~aAl~sLr~d---------sGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~ 261 (450)
T COG5095 194 ELQMYFDKVISAL---LDESDEQTRDAALESLRND---------SGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYS 261 (450)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHhccC---------ccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3334445544443 3445777888888776531 23445566655555432 1122222333333
Q ss_pred HHHHhhhhccccchHHHHHHHHHhhcC-----CC-----hhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHhccC
Q 004960 445 AFCEDMGEEILPFLDPLMGKLLAALEN-----SP-----RNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTN 514 (721)
Q Consensus 445 ~l~~~~~~~~~~~~~~i~~~l~~~l~~-----~~-----~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~ 514 (721)
.++++-.--+.||+.++++.++.++-. .+ ..+|.-+...++.+....+..+...-+.+...+.+.+-..+
T Consensus 262 sLL~N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~ 341 (450)
T COG5095 262 SLLKNKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDRE 341 (450)
T ss_pred HHhcCCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcc
Confidence 444443345679999999998887643 12 23677777777777777776665555666654444332211
Q ss_pred chhhhhHHHHHHHHHHHH
Q 004960 515 DEDLRSRARATELLGLVA 532 (721)
Q Consensus 515 ~~~~~~~~~~~~~l~~l~ 532 (721)
......-.|+.+++.+.
T Consensus 342 -k~~sT~YGalkgls~l~ 358 (450)
T COG5095 342 -KTESTQYGALKGLSILS 358 (450)
T ss_pred -cccchhhhhhhhhhhhc
Confidence 11122345677777775
No 240
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=95.03 E-value=0.51 Score=45.80 Aligned_cols=146 Identities=15% Similarity=0.198 Sum_probs=92.0
Q ss_pred CCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcc------cccHHHHHHHHHHhhC--------CCCCHHHHHH
Q 004960 114 GEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTF------RPHFADMQALLLKCLQ--------DETSNRVRIA 179 (721)
Q Consensus 114 ~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~------~~~~~~l~~~l~~~l~--------~~~~~~vr~~ 179 (721)
..|+-++|.+..++.+.++..+..++.++..+++..+... ....+-+-+.+..++. + .+..+-..
T Consensus 115 ~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~-~s~~Ll~~ 193 (282)
T PF10521_consen 115 QHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPED-ESLELLQA 193 (282)
T ss_pred HhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCch-hhHHHHHH
Confidence 4799999999999999999999999999999998764322 1112333344444544 2 45566677
Q ss_pred HHHHHHHhhhhcCCh---hhHHHHHhhHHH-HHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHh
Q 004960 180 ALKAIGSFLEFTNDG---AEVVKFREFIPS-ILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEV 255 (721)
Q Consensus 180 a~~~l~~l~~~~~~~---~~~~~~~~~l~~-ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~ 255 (721)
+..|+..++...... .....+...+-. ++..+......+.++.+...++.+..+++..+...-.++..++..+.++
T Consensus 194 ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~ 273 (282)
T PF10521_consen 194 AYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQI 273 (282)
T ss_pred HHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 888888776543111 111112222221 3332211111124777788888888888777777777888888877777
Q ss_pred hcCCC
Q 004960 256 SSSHN 260 (721)
Q Consensus 256 ~~~~~ 260 (721)
+++..
T Consensus 274 l~npf 278 (282)
T PF10521_consen 274 LENPF 278 (282)
T ss_pred hcCCC
Confidence 66653
No 241
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=94.94 E-value=0.18 Score=50.25 Aligned_cols=125 Identities=14% Similarity=0.152 Sum_probs=84.6
Q ss_pred HHHHHHHHcC-ccccHhHHHHHHhhhc--CC-ChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhc----------
Q 004960 322 VIDTMALNLA-KHVFPPVFEFASVSCQ--NA-SPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGAL---------- 387 (721)
Q Consensus 322 ~l~~l~~~~~-~~~~~~i~~~l~~~l~--~~-~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l---------- 387 (721)
+|..+...-| .+.+|.++.++.+... .. ++..-...+.++.++..+-.-.+.+|+..++|.++.++
T Consensus 198 aL~sL~tD~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~ 277 (343)
T cd08050 198 ALQSLRTDPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPP 277 (343)
T ss_pred HHHHhccCCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCC
Confidence 4555555444 3455555555554432 12 56667777888888888777778889999999988887
Q ss_pred CCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChH--HHHHHHHHHHHH
Q 004960 388 RDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDE--VKEKSYYALAAF 446 (721)
Q Consensus 388 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~--v~~~a~~al~~l 446 (721)
.+.++.+|..|+..++.++..++.......+.++..+.+.+.|+... .+-.|+..|..+
T Consensus 278 ~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 278 DDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred CchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 24578999999999999999887644444566777777777776432 244444444443
No 242
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.90 E-value=0.65 Score=45.65 Aligned_cols=133 Identities=14% Similarity=0.169 Sum_probs=105.9
Q ss_pred HHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhH-HHHHhh
Q 004960 339 FEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQP-EIVSHY 417 (721)
Q Consensus 339 ~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~ 417 (721)
+..+...+++-+.+.|..|+..+..+....+.....+...+++.+.+...|.+..||.....++..+.....+ ...+++
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~ 139 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMV 139 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchH
Confidence 3334445677889999999999999988877777778888999999999999999999999999886655443 335677
Q ss_pred hhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcC
Q 004960 418 ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALEN 471 (721)
Q Consensus 418 ~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~ 471 (721)
.-+++.+..++....+.+|..+...+.-++..+++.+..+...++..+...++.
T Consensus 140 ~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d~i~~ 193 (393)
T KOG2149|consen 140 SLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILENFKDVISK 193 (393)
T ss_pred HHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence 888888888899989999999999999999999876666655566555555443
No 243
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.89 E-value=3.8 Score=39.30 Aligned_cols=303 Identities=15% Similarity=0.116 Sum_probs=164.9
Q ss_pred hcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcC--CCCHhHHHHHHHHHHHHHhhhhHHHHHhh-hhHHH
Q 004960 346 CQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALR--DPEQFVRGAASFALGQFAEYLQPEIVSHY-ESVLP 422 (721)
Q Consensus 346 l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~l~ 422 (721)
-.+++...-.-++.++..+..+.++.+... -+..+++.|. .++..+-...+.++..-|..-...-+.++ -.+++
T Consensus 116 a~~~~~~~l~ksL~al~~lt~~qpdl~da~---g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~ 192 (461)
T KOG4199|consen 116 AESPNESVLKKSLEAINSLTHKQPDLFDAE---AMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILE 192 (461)
T ss_pred hhCCchhHHHHHHHHHHHhhcCCcchhccc---cHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHH
Confidence 345555566667777777777766655442 2334444443 34556666666666665544322222333 35666
Q ss_pred HHHHhccCC-ChHHHHHHHHHHHHHHHhhhh-----ccccchH-----HHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHH
Q 004960 423 CILNALEDE-SDEVKEKSYYALAAFCEDMGE-----EILPFLD-----PLMGKLLAALENS-PRNLQETCMSAIGSVAAA 490 (721)
Q Consensus 423 ~l~~~l~~~-~~~v~~~a~~al~~l~~~~~~-----~~~~~~~-----~i~~~l~~~l~~~-~~~v~~~~l~~l~~l~~~ 490 (721)
.+...+... ..++...+++++..+...-+- ....|.. .++..|...+... ++.+-..+..+++.++-.
T Consensus 193 Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr 272 (461)
T KOG4199|consen 193 LILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR 272 (461)
T ss_pred HHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 666566543 345667789998877643210 1111221 2334444444433 455556666667666533
Q ss_pred hhhcchhhHHH--HHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhccC------ChHHHHHHHHhccCCCChhh
Q 004960 491 AEQAFIPYAER--VLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEP------ILPPFVEAAISGFGLEFSEL 562 (721)
Q Consensus 491 ~~~~~~~~~~~--i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~------~~~~i~~~l~~~l~~~~~~~ 562 (721)
- .+-.-..+ =+..+..++...+ +...|..+-.|++.+...-|.+.... -.+.|+..+.+.. ++|.+
T Consensus 273 ~--E~C~~I~e~GGl~tl~~~i~d~n--~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~--~~p~V 346 (461)
T KOG4199|consen 273 D--EICKSIAESGGLDTLLRCIDDSN--EQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHS--DDPLV 346 (461)
T ss_pred H--HHHHHHHHccCHHHHHHHHhhhc--hhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcC--CChHH
Confidence 1 11110000 0223344443332 23344334444444443335444332 3456666665543 47889
Q ss_pred HHHHHHHHHHHHHHcccCcccchhh-hHHHHHhhccCCCCCccCCCCCccccccCCCCCCCCchhhhhccccceeeecch
Q 004960 563 REYTHGFFSNIAGVLEDGFAQYLPL-VVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGV 641 (721)
Q Consensus 563 ~~~~~~~l~~l~~~~~~~~~~~l~~-i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (721)
.+.++.+++.++-..++.-..+++. .-...+++++.. ...
T Consensus 347 i~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkah---------------------------------------P~~ 387 (461)
T KOG4199|consen 347 IQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAH---------------------------------------PVA 387 (461)
T ss_pred HHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhC---------------------------------------cHH
Confidence 9999999998886665543332221 111112221111 111
Q ss_pred hhhHHHHHHHHHHHHHHccccccchHHHHHHHHHhcccCCChhHHHHHHHHHHHH
Q 004960 642 LDEKAAATQALGLFALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNI 696 (721)
Q Consensus 642 ~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l 696 (721)
..+.+.|++.+-.|+.+..+.-.+.+..=++.|+..-...+++++.+|-.+|..+
T Consensus 388 a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 388 AQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKANHETCEAAAKAALRDL 442 (461)
T ss_pred HHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHhcCccHHHHHHHHHHhc
Confidence 2457889999999999998888888887777777776667888888887777655
No 244
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=94.76 E-value=5.5 Score=40.53 Aligned_cols=236 Identities=12% Similarity=0.113 Sum_probs=131.1
Q ss_pred CcHHHHHHHHHHHHH------HHcCccccHhHHHHHHhhhcCCCh-hhH-hHHHHHHHHHhhccH-HHHHHhH-HHHHHH
Q 004960 313 LAPDRAAAEVIDTMA------LNLAKHVFPPVFEFASVSCQNASP-KYR-EAAVTAIGIISEGCA-EWMKEKL-ESVLHI 382 (721)
Q Consensus 313 ~~~~~~a~~~l~~l~------~~~~~~~~~~i~~~l~~~l~~~~~-~~r-~~al~~l~~i~~~~~-~~~~~~l-~~i~~~ 382 (721)
......|..+++.+. ..++++...-++......+.+++. +.. ..++++++. ..++ +.+.... ..++..
T Consensus 60 ~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~--Q~f~~~~~~~~~~~~l~~~ 137 (372)
T PF12231_consen 60 SRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSD--QKFSPKIMTSDRVERLLAA 137 (372)
T ss_pred hHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--CCCCCcccchhhHHHHHHH
Confidence 344555666666543 344444444466666666655432 222 222333322 1122 2222222 233333
Q ss_pred HHhhcC-CCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHH
Q 004960 383 VLGALR-DPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPL 461 (721)
Q Consensus 383 l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i 461 (721)
+...-+ -++..+-...+.++.++....+..+..+...-+|.++..+-+....+|..|...+..+...++.. ..+
T Consensus 138 l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~-----~~~ 212 (372)
T PF12231_consen 138 LHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPN-----KEL 212 (372)
T ss_pred HHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChh-----HHH
Confidence 333322 34667888899999999999988888888888888888888877888888666655554333311 011
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchh--h
Q 004960 462 MGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRA--R 539 (721)
Q Consensus 462 ~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~--~ 539 (721)
...+...++.. ..+. .|.+.+.+.+...+....+. ..+....+.+..-+|.. .
T Consensus 213 s~~~~~~~~~~------------------~~~~--~~~~~~~~~L~~mi~~~~~~-----~~a~~iW~~~i~LL~~~~~~ 267 (372)
T PF12231_consen 213 SKSVLEDLQRS------------------LENG--KLIQLYCERLKEMIKSKDEY-----KLAMQIWSVVILLLGSSRLD 267 (372)
T ss_pred HHHHHHHhccc------------------cccc--cHHHHHHHHHHHHHhCcCCc-----chHHHHHHHHHHHhCCchhh
Confidence 11111111111 0111 34444455555555431111 12444445554444432 2
Q ss_pred ccCChHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHcccC
Q 004960 540 MEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDG 580 (721)
Q Consensus 540 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~ 580 (721)
-.+++...+...-.+++.+++.+|..++.+|..++.....+
T Consensus 268 ~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~ 308 (372)
T PF12231_consen 268 SWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPN 308 (372)
T ss_pred ccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 34567778888878999999999999999999999866554
No 245
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=94.56 E-value=0.63 Score=43.34 Aligned_cols=96 Identities=13% Similarity=0.106 Sum_probs=64.7
Q ss_pred hHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhc------C----CCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHH
Q 004960 353 YREAAVTAIGIISEGCAEWMKEKLESVLHIVLGAL------R----DPEQFVRGAASFALGQFAEYLQPEIVSHYESVLP 422 (721)
Q Consensus 353 ~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l------~----d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~ 422 (721)
.--..+.+..++..+..-++.||+.+++|.++.++ + +++-.+|..|+..++-.+..++......-+.+..
T Consensus 252 ~LtTv~~m~~sLL~N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtr 331 (450)
T COG5095 252 KLTTVVMMYSSLLKNKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTR 331 (450)
T ss_pred HHHHHHHHHHHHhcCCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHH
Confidence 33445666677777666677788888888777765 1 2345699999999999999887655545566777
Q ss_pred HHHHhccCCC--hHHHHHHHHHHHHHHH
Q 004960 423 CILNALEDES--DEVKEKSYYALAAFCE 448 (721)
Q Consensus 423 ~l~~~l~~~~--~~v~~~a~~al~~l~~ 448 (721)
.+++.+-|.+ ...+-.|+.+++.+-.
T Consensus 332 TllKafLD~~k~~sT~YGalkgls~l~k 359 (450)
T COG5095 332 TLLKAFLDREKTESTQYGALKGLSILSK 359 (450)
T ss_pred HHHHHHHhcccccchhhhhhhhhhhhch
Confidence 7777766553 2245556666655543
No 246
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=94.47 E-value=0.13 Score=44.45 Aligned_cols=80 Identities=24% Similarity=0.227 Sum_probs=64.6
Q ss_pred CCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHh
Q 004960 389 DPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAA 468 (721)
Q Consensus 389 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~ 468 (721)
|..-.+|.+|..++..+.+.+...+ .+..++..+..+|.| +..++.-++..+.+++...+..+.+.++.+++.+...
T Consensus 38 DDGLelRK~ayE~lytlLd~~~~~~--~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~ 114 (169)
T PF08623_consen 38 DDGLELRKAAYECLYTLLDTCLSRI--DISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKT 114 (169)
T ss_dssp EGGGHHHHHHHHHHHHHHHSTCSSS---HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 3456899999999999988765432 256778999999999 7899999999999999999888888888888888888
Q ss_pred hcC
Q 004960 469 LEN 471 (721)
Q Consensus 469 l~~ 471 (721)
++.
T Consensus 115 L~~ 117 (169)
T PF08623_consen 115 LSK 117 (169)
T ss_dssp HH-
T ss_pred hhc
Confidence 764
No 247
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=94.43 E-value=4.7 Score=38.34 Aligned_cols=71 Identities=15% Similarity=0.109 Sum_probs=52.5
Q ss_pred HHHHHHHhhcCCCCHh-HHHHHHHHHHHHHhhhhHHHHHhh--hhHHHHHHHhccCCChHHHHHHHHHHHHHHHh
Q 004960 378 SVLHIVLGALRDPEQF-VRGAASFALGQFAEYLQPEIVSHY--ESVLPCILNALEDESDEVKEKSYYALAAFCED 449 (721)
Q Consensus 378 ~i~~~l~~~l~d~~~~-vr~~a~~~l~~l~~~~~~~~~~~~--~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~ 449 (721)
.++..+.+.++..++. ....||.=++.+.+..|+. ...+ -+.=..+++.+++++++|+..|++|+..++..
T Consensus 356 ~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~-~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~~ 429 (432)
T COG5231 356 EIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEI-NAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCISS 429 (432)
T ss_pred HHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchH-HHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHhh
Confidence 6777788888766555 4456788888888887653 2222 25566778889999999999999999887653
No 248
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.34 E-value=6.8 Score=45.94 Aligned_cols=111 Identities=14% Similarity=0.099 Sum_probs=87.0
Q ss_pred HHHHHHhhhcCCChhhHhHHHHHHHHHhhccH-HHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHh
Q 004960 338 VFEFASVSCQNASPKYREAAVTAIGIISEGCA-EWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSH 416 (721)
Q Consensus 338 i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 416 (721)
-+..+.+.+...|...|.-|++-++.+.+... +.....++.......++..|.+..||......+..+...++..+.+|
T Consensus 42 el~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~ 121 (1312)
T KOG0803|consen 42 ELDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPF 121 (1312)
T ss_pred HHHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 34455556667788899999999999887654 33333355555566777789999999999999999999999999999
Q ss_pred hhhHHHHHHHhccCCChHHHHHHHHHHHHHHH
Q 004960 417 YESVLPCILNALEDESDEVKEKSYYALAAFCE 448 (721)
Q Consensus 417 ~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~ 448 (721)
+..++|...-+.-|....|...|...+.....
T Consensus 122 LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f~ 153 (1312)
T KOG0803|consen 122 LKSLIPPWLGGQFDLDYPVSEAAKASFKDGFA 153 (1312)
T ss_pred HHhhhhhhhheecccchHHHHHHHHHHHhhcC
Confidence 99999999888888877788777777765543
No 249
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=94.32 E-value=0.71 Score=39.18 Aligned_cols=76 Identities=14% Similarity=0.212 Sum_probs=63.8
Q ss_pred hhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccch--HHHHHHHHHhhcC-CChhHHHHHHHHHHHHHHHhhh
Q 004960 418 ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFL--DPLMGKLLAALEN-SPRNLQETCMSAIGSVAAAAEQ 493 (721)
Q Consensus 418 ~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~--~~i~~~l~~~l~~-~~~~v~~~~l~~l~~l~~~~~~ 493 (721)
...+..|.+.+.+.++.++..|+..|..+++++|..+...+ ..+++.|.+++.. .+..|+..++..+...+...+.
T Consensus 36 k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~ 114 (144)
T cd03568 36 KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKN 114 (144)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 47788889999999999999999999999999987665432 3777778888877 6889999999999998888763
No 250
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=94.29 E-value=6.4 Score=42.15 Aligned_cols=324 Identities=13% Similarity=0.114 Sum_probs=146.0
Q ss_pred HHHHHHHhhc-CCHHHHHHHHHHHHHHH----cc---ccCCCCCcchHHHHHHhccC--CcHHHHHHHHHHHHHhhhh-h
Q 004960 81 QSLIESITLE-HSAPVRRASANVVSIIA----KY---AVPAGEWPDLLPFLFQFSQS--EQEEHREVALILFSSLTET-I 149 (721)
Q Consensus 81 ~~ll~~l~~e-~~~~vr~~~~~~l~~i~----~~---~~~~~~~~~ll~~l~~~l~~--~~~~~~~~al~~l~~i~~~-~ 149 (721)
..+-+.+... .+..++.+.|+++..+. .. +.....|.+.+..|...+.. ..+++...++-....+.-. .
T Consensus 132 ~~l~~~f~~~h~~~~ik~A~~~~l~~lLlPvA~~~~~evn~P~W~~~v~~i~~~~~~~~~K~khw~~afPL~t~lLCvS~ 211 (552)
T PF14222_consen 132 QSLAKFFLEAHKKSDIKHAYCEVLVELLLPVAATATAEVNHPKWKEAVETIYPRAAKMMSKPKHWNVAFPLVTTLLCVSP 211 (552)
T ss_pred HHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHHHHhcCc
Confidence 3444444443 35569999999998863 21 22112687776666443321 1134444566555554433 3
Q ss_pred hhcccccHH-HHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhh-c--CChhhHHHHHhhHHHHHHHHHHHhh----cCCHH
Q 004960 150 GQTFRPHFA-DMQALLLKCLQDETSNRVRIAALKAIGSFLEF-T--NDGAEVVKFREFIPSILNVSRQCLA----SGEED 221 (721)
Q Consensus 150 ~~~~~~~~~-~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~-~--~~~~~~~~~~~~l~~ll~~l~~~l~----~~~~~ 221 (721)
++.|..++. .++..+..-++| . ..|..++.|+.+++-. . .-++.......-+..++..+...-+ ..|..
T Consensus 212 ~e~F~~~W~~~~i~~~~~klKd-k--~~r~~~l~~l~RLlWvYL~~r~~Es~n~T~krL~~i~~~lfp~~kk~~i~~D~~ 288 (552)
T PF14222_consen 212 KEFFLSNWLPSLIESLISKLKD-K--ETRPVALECLSRLLWVYLVYRCPESLNNTTKRLDSIFKLLFPKGKKGWIPRDPE 288 (552)
T ss_pred HHHHHHHHHHHHHHHHHhhcCC-h--hhhHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHccCCCCcccCCChh
Confidence 455566666 577777777766 4 7788888888876321 1 1111112222334444444322111 11234
Q ss_pred HHHHHHHHHHHHhcCcccch-hhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHH-HHHH--
Q 004960 222 VAVIAFEIFDELIESPAPLL-GDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPI-LQVM-- 297 (721)
Q Consensus 222 ~~~~a~~~l~~l~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~i-l~~l-- 297 (721)
.....++++.-++...+.+. +..+-.++..-.....-+..+++--..++..+..+.......-.. ++.+.- .+..
T Consensus 289 ~~~~lv~ii~~I~~~~~df~~~~iI~~LL~~~~~~s~~~~l~pERm~IgIRA~l~Il~~~e~~e~p-~~p~~~~~~~~~~ 367 (552)
T PF14222_consen 289 PLNPLVQIIRFIGYKHLDFAFRNIIFPLLNVSFNGSSLENLNPERMIIGIRAFLAILSDLEQKEKP-PPPPPTSDPSGNT 367 (552)
T ss_pred hhhhHHHHHHhHhhhCcchHHHHHHHHHHccccccccccccChhHHHHHHHHHHHHHHhhccCCCC-CCCCCcCCCCCcc
Confidence 44455555555555555443 333333322110000002234444455555555444321111110 000000 0000
Q ss_pred --------HhhhccCCCCCCCCC-----CcHHHHHHHHHHHHHHHcCcccc-HhHHHH---------HHhhhcCCChhhH
Q 004960 298 --------CPLLAESNEAGEDDD-----LAPDRAAAEVIDTMALNLAKHVF-PPVFEF---------ASVSCQNASPKYR 354 (721)
Q Consensus 298 --------~~~l~~~~~~~~~~~-----~~~~~~a~~~l~~l~~~~~~~~~-~~i~~~---------l~~~l~~~~~~~r 354 (721)
-..+.. +...... ...+.+....+..+.+.+|...+ +.-... +.-....+.....
T Consensus 368 ~~~~~~~~~~~l~~--~~~~~~~i~~~~~~~~~~l~~il~~cD~~~G~~~~~~~~~~~~~~~t~~~~f~f~~~~d~~~~~ 445 (552)
T PF14222_consen 368 LRVKYTPSNEYLSN--EIAKNSGIREYYEEFCRALGKILRLCDNTFGSQLWLDEKQSSSKPKTPFSSFSFGRNDDMVTDQ 445 (552)
T ss_pred cccccCcccccccc--hhhccccHHHHHHHHHHHHHHHHHHHHHHhchhhccCcccccCCCCCCcccccccccccccccc
Confidence 000000 0000000 01111222222223333442111 100000 0000000111122
Q ss_pred hHHHHHHHHHhhccHHHHHHh--HHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhh
Q 004960 355 EAAVTAIGIISEGCAEWMKEK--LESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQ 410 (721)
Q Consensus 355 ~~al~~l~~i~~~~~~~~~~~--l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 410 (721)
...+..+..+.+..|.-+.+. ..++++.+....-+.++.|+..|..+|.+++...+
T Consensus 446 ~~~~~Lf~t~i~aiPrcL~~~i~~~~lielL~R~tvHvd~~I~~~A~~aLk~la~~~p 503 (552)
T PF14222_consen 446 KPQLDLFRTCIQAIPRCLPSSIPFKSLIELLCRGTVHVDPNIRESAAQALKRLARDKP 503 (552)
T ss_pred cchhHHHHHHHHHccccCCCCCcHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHcCC
Confidence 344455666555544333222 46888899999899999999999999999998874
No 251
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=94.22 E-value=0.097 Score=33.18 Aligned_cols=29 Identities=28% Similarity=0.464 Sum_probs=27.0
Q ss_pred HHHHHHHhhcCCCCHhHHHHHHHHHHHHH
Q 004960 378 SVLHIVLGALRDPEQFVRGAASFALGQFA 406 (721)
Q Consensus 378 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~ 406 (721)
..+|.++++++++++.|+..|+|+|++++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999986
No 252
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=94.04 E-value=0.11 Score=32.84 Aligned_cols=30 Identities=23% Similarity=0.433 Sum_probs=28.0
Q ss_pred hhHHHHHHHhccCCChHHHHHHHHHHHHHH
Q 004960 418 ESVLPCILNALEDESDEVKEKSYYALAAFC 447 (721)
Q Consensus 418 ~~~l~~l~~~l~~~~~~v~~~a~~al~~l~ 447 (721)
.+.+|.|++.|.+++..++..|+++|++++
T Consensus 11 ~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 11 AGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp TTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 478999999999999999999999999986
No 253
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=93.92 E-value=7.5 Score=40.15 Aligned_cols=164 Identities=15% Similarity=0.155 Sum_probs=98.5
Q ss_pred HHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCC--------ChHHHHHHHHHHHHHHHhhhhc
Q 004960 382 IVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDE--------SDEVKEKSYYALAAFCEDMGEE 453 (721)
Q Consensus 382 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~--------~~~v~~~a~~al~~l~~~~~~~ 453 (721)
.+.+.+.+.++..|..|+.+|.. . .-+++++|.++..+.+. +-..-......+..+.++-.-.
T Consensus 211 ~It~a~~g~~~~~r~eAL~sL~T---D------sGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~ 281 (576)
T KOG2549|consen 211 EITEACTGSDEPLRQEALQSLET---D------SGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIF 281 (576)
T ss_pred HHHHHHhcCCHHHHHHHHHhhcc---C------ccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccc
Confidence 33444445788899999888763 1 23445566665555433 2222333334444444444456
Q ss_pred cccchHHHHHHHHHhhcCC----------ChhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHhccCchhhhhHHH
Q 004960 454 ILPFLDPLMGKLLAALENS----------PRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRAR 523 (721)
Q Consensus 454 ~~~~~~~i~~~l~~~l~~~----------~~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~ 523 (721)
+.||+..+++.++.++-.. .+.+|.-+...++.++...+.......+.+...+.+.+.... ......-.
T Consensus 282 lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~-~~~st~YG 360 (576)
T KOG2549|consen 282 LEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNK-KPLSTHYG 360 (576)
T ss_pred hhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCC-CCchhhhh
Confidence 7899999999999887653 356888998899988888887776667777777777775432 22333445
Q ss_pred HHHHHHHHHHhhchhhccCChHHHHHHHHhcc
Q 004960 524 ATELLGLVAESVGRARMEPILPPFVEAAISGF 555 (721)
Q Consensus 524 ~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l 555 (721)
++.++..++...-.-.+.|.+......+-..+
T Consensus 361 ai~gL~~lg~~~I~~~ilp~L~~~~~~l~~~l 392 (576)
T KOG2549|consen 361 AIAGLSELGHEVIRTVILPNLKEYNERLQSVL 392 (576)
T ss_pred HHHHHHHhhhhhhhheeccchHHHHHHhhhhc
Confidence 66666666532212234455555555444433
No 254
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.91 E-value=7.7 Score=45.52 Aligned_cols=91 Identities=15% Similarity=0.325 Sum_probs=70.2
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCc
Q 004960 158 ADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESP 237 (721)
Q Consensus 158 ~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~ 237 (721)
+.-+..+.+-+.. .++.+|..|++.+..++..... .....++|.......+.+.+.+..+|.+..+.+..+....
T Consensus 40 dsel~~I~kkL~K-kD~~TK~KaL~eL~eli~~~~~----e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~l 114 (1312)
T KOG0803|consen 40 DSELDIIVKKLLK-RDETTKIKALQELSELIDTSDT----EELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKL 114 (1312)
T ss_pred CHHHHHHHHHHhc-cChHHHHHHHHhHHHhcccccc----hHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHH
Confidence 3444555566666 7899999999999998876532 2244567777777777888899999999999999998887
Q ss_pred ccchhhhHHHHHHHHH
Q 004960 238 APLLGDSVKSIVHFSL 253 (721)
Q Consensus 238 ~~~~~~~~~~l~~~~~ 253 (721)
...+.+++..+++.++
T Consensus 115 kk~lsp~LK~li~~wl 130 (1312)
T KOG0803|consen 115 KKKLSPFLKSLIPPWL 130 (1312)
T ss_pred HHHhhHHHHhhhhhhh
Confidence 7778888888888765
No 255
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=93.82 E-value=8.2 Score=38.82 Aligned_cols=223 Identities=11% Similarity=0.087 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhh----h-h
Q 004960 75 LKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTE----T-I 149 (721)
Q Consensus 75 ~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~----~-~ 149 (721)
.-..|.+.+...+..|.++........+++.-.... ....=+.++..+...+++..+..|..-+.+++..+. . .
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~-~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~ 97 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL-SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDS 97 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh-CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchH
Confidence 446677788888888999998888888887654433 112346788999999998888899999999999886 1 1
Q ss_pred hhcccccHHHHHHHHHHhhCCCCCHHHH---HHHHHHHHHhhhhcCChhhHH--HHHhhH----HHHHHHHHHHhhc-CC
Q 004960 150 GQTFRPHFADMQALLLKCLQDETSNRVR---IAALKAIGSFLEFTNDGAEVV--KFREFI----PSILNVSRQCLAS-GE 219 (721)
Q Consensus 150 ~~~~~~~~~~l~~~l~~~l~~~~~~~vr---~~a~~~l~~l~~~~~~~~~~~--~~~~~l----~~ll~~l~~~l~~-~~ 219 (721)
.....+..+.++..+.+...+ +.+... ..+..++........+..+.. ....+. |.++-. .+..+. .+
T Consensus 98 ~~~~~~~~~~L~~~~~~~~~~-p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~-~kvyskl~~ 175 (339)
T PF12074_consen 98 LKFAEPFLPKLLQSLKEASAN-PLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLS-EKVYSKLAS 175 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHhC-CCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcC-HHHHhccCC
Confidence 222233445555555555555 332222 111111111111000000000 000000 000000 011111 35
Q ss_pred HHHHHHHHHHHHHHhcCcccchhhhH-HHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHH
Q 004960 220 EDVAVIAFEIFDELIESPAPLLGDSV-KSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMC 298 (721)
Q Consensus 220 ~~~~~~a~~~l~~l~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~ 298 (721)
++.....++.+..+............ ..+-+.++..+.+...+.++|..|...+..+....+..+ ...++..+.
T Consensus 176 ~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~l-----~~~li~~l~ 250 (339)
T PF12074_consen 176 EEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPELL-----SKSLISGLW 250 (339)
T ss_pred HhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHHH-----HHHHHHHHH
Confidence 56667777777777765543332222 334444444455565678899999999998887665542 446777777
Q ss_pred hhhccCC
Q 004960 299 PLLAESN 305 (721)
Q Consensus 299 ~~l~~~~ 305 (721)
.++...+
T Consensus 251 ~~l~~~~ 257 (339)
T PF12074_consen 251 KWLSSSE 257 (339)
T ss_pred HHHHhcc
Confidence 7776544
No 256
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=93.72 E-value=7.9 Score=38.35 Aligned_cols=184 Identities=13% Similarity=0.188 Sum_probs=113.3
Q ss_pred ChhHHHHHHHHHHHhhhhhhcCCCHHHHHHHHH---HHHHHHhh-cCCHHHHHHHHHHHHHHHccccCC--CCCcchHHH
Q 004960 49 TPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQ---SLIESITL-EHSAPVRRASANVVSIIAKYAVPA--GEWPDLLPF 122 (721)
Q Consensus 49 ~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i~~---~ll~~l~~-e~~~~vr~~~~~~l~~i~~~~~~~--~~~~~ll~~ 122 (721)
+.+.|.-++.++.+.++..-..-.....+++.+ .++..|.. -.++.+.-.++.++...++++.-. -.+++.+-.
T Consensus 89 ~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k~e~l~~~iL~~~~f~~ 168 (335)
T PF08569_consen 89 DFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIKHESLAKIILYSECFWK 168 (335)
T ss_dssp -HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTSHHHHHHHHTSGGGGG
T ss_pred CCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhhHHHHHHHhCcHHHHH
Confidence 678899998888888876533312012333322 23333331 124555566666666655432100 012334445
Q ss_pred HHHhccCCcHHHHHHHHHHHHHhhhhh----hhcccccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHH
Q 004960 123 LFQFSQSEQEEHREVALILFSSLTETI----GQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVV 198 (721)
Q Consensus 123 l~~~l~~~~~~~~~~al~~l~~i~~~~----~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~ 198 (721)
+++.++.++-++...|+.++..+.... .+.+..+++.++....+++.+ +|--+|..+++.|+.++.......-..
T Consensus 169 ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s-~NYvtkrqslkLL~ellldr~n~~vm~ 247 (335)
T PF08569_consen 169 FFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLES-SNYVTKRQSLKLLGELLLDRSNFNVMT 247 (335)
T ss_dssp HHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT--SSHHHHHHHHHHHHHHHHSGGGHHHHH
T ss_pred HHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccC-CCeEeehhhHHHHHHHHHchhHHHHHH
Confidence 778888888888889999999887553 344566778888988899988 899999999999999875432211111
Q ss_pred HH---HhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCc
Q 004960 199 KF---REFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESP 237 (721)
Q Consensus 199 ~~---~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~ 237 (721)
++ ...+..++. .+.+++..++..|+.++.-++..+
T Consensus 248 ~yi~~~~nLkl~M~----lL~d~sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 248 RYISSPENLKLMMN----LLRDKSKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp HHTT-HHHHHHHHH----HTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred HHHCCHHHHHHHHH----HhcCcchhhhHHHHHHHHHHHhCC
Confidence 11 233444444 677889999999999998887653
No 257
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=93.64 E-value=1 Score=38.76 Aligned_cols=122 Identities=19% Similarity=0.246 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHcCccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccH----------------HHHHHhHHHHHH
Q 004960 318 AAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCA----------------EWMKEKLESVLH 381 (721)
Q Consensus 318 ~a~~~l~~l~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~----------------~~~~~~l~~i~~ 381 (721)
....++..++...-+.-++.+++.+.+.+++ +.......+..+..+.+-.. +.+....+.++.
T Consensus 7 kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~~i~~ 85 (148)
T PF08389_consen 7 KLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSPDILE 85 (148)
T ss_dssp HHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHChhhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555443333455566666655555 35556666666666554321 123344566667
Q ss_pred HHHhhcCCCC----HhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHH
Q 004960 382 IVLGALRDPE----QFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYAL 443 (721)
Q Consensus 382 ~l~~~l~d~~----~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al 443 (721)
.+.+.+.... ..+...++.+++.+..+.+...... .++++.+++.+.+++ .+..|+.+|
T Consensus 86 ~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~-~~~l~~~~~~l~~~~--~~~~A~~cl 148 (148)
T PF08389_consen 86 ILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIIN-SNLLNLIFQLLQSPE--LREAAAECL 148 (148)
T ss_dssp HHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHS-SSHHHHHHHHTTSCC--CHHHHHHHH
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhcc-HHHHHHHHHHcCCHH--HHHHHHHhC
Confidence 6666665322 8889999999999999876532222 469999999996654 477777765
No 258
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=93.62 E-value=2.6 Score=35.46 Aligned_cols=98 Identities=14% Similarity=0.096 Sum_probs=71.5
Q ss_pred hcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhh--hhHHHH
Q 004960 346 CQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY--ESVLPC 423 (721)
Q Consensus 346 l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~~l~~ 423 (721)
+.++||.....-+..+..=..+ -...+..+.+.+++.+|.|...|+..|..+.++++..+...+ ..++..
T Consensus 14 l~~~dw~~ileicD~In~~~~~--------~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~e 85 (139)
T cd03567 14 NREEDWEAIQAFCEQINKEPEG--------PQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNE 85 (139)
T ss_pred CCCCCHHHHHHHHHHHHcCCcc--------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHH
Confidence 4566776665555554321111 124567788889999999999999999999999998776543 466777
Q ss_pred HHHhccC------CChHHHHHHHHHHHHHHHhhh
Q 004960 424 ILNALED------ESDEVKEKSYYALAAFCEDMG 451 (721)
Q Consensus 424 l~~~l~~------~~~~v~~~a~~al~~l~~~~~ 451 (721)
+++.+.. .+..|+..++..+......++
T Consensus 86 l~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 119 (139)
T cd03567 86 LIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELP 119 (139)
T ss_pred HHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 7777742 457899999999998888775
No 259
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=93.61 E-value=6.4 Score=36.95 Aligned_cols=194 Identities=19% Similarity=0.150 Sum_probs=106.9
Q ss_pred cCCChHHHHHHHHHHHHHhcCC-CcHHHHHHHHh---cCCChhHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHHHH---
Q 004960 13 LMPDNDARRQAEDQIKRLAKDP-QVVPALVQHLR---TAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIE--- 85 (721)
Q Consensus 13 ~s~d~~~r~~A~~~L~~~~~~p-~~~~~l~~il~---~~~~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i~~~ll~--- 85 (721)
...+++.....-+.|.++.... ......++++. +......+.++..++- ..|..-+ .....++..+..
T Consensus 11 ~~~~~~~~~~~L~~L~~l~~~~~~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~----~lw~~~~-r~f~~L~~~L~~~~~ 85 (234)
T PF12530_consen 11 KISDPELQLPLLEALPSLACHKNVCVPPVLQTLVSLVEQGSLELRYVALRLLT----LLWKAND-RHFPFLQPLLLLLIL 85 (234)
T ss_pred CCCChHHHHHHHHHHHHHhccCccchhHHHHHHHHHHcCCchhHHHHHHHHHH----HHHHhCc-hHHHHHHHHHHHHHh
Confidence 3567788888888887776655 44445555544 2333444445544443 3454322 122334433333
Q ss_pred -HHh--h--cCCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhc-cCCcHHHHHHHHHHHHHhhhhhhhcccccHHH
Q 004960 86 -SIT--L--EHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFS-QSEQEEHREVALILFSSLTETIGQTFRPHFAD 159 (721)
Q Consensus 86 -~l~--~--e~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l-~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~ 159 (721)
... . +......-..+..+..+.... |+ .|.++++.+.+.+ ++.++..+..++..+..+++...-.+. .
T Consensus 86 r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~-p~-~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~----s 159 (234)
T PF12530_consen 86 RIPSSFSSKDEFWECLISIAASIRDICCSR-PD-HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFY----S 159 (234)
T ss_pred hcccccCCCcchHHHHHHHHHHHHHHHHhC-hh-hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHH----H
Confidence 111 1 233455555567777787765 33 8999999999999 777888888999999999965433222 3
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCH
Q 004960 160 MQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEE 220 (721)
Q Consensus 160 l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~ 220 (721)
....+.+-+..+..+.+-...+..+. ++....- +...+..+...++..+-+.....+.
T Consensus 160 ~w~vl~~~l~~~~rp~v~~~l~~l~~-l~~~~~~--~~e~~~~~~~~~l~~lW~~~~~~~~ 217 (234)
T PF12530_consen 160 AWKVLQKKLSLDYRPLVLKSLCSLFA-LVPQGAV--DSEEYEELKRQILQLLWEYTSSSDV 217 (234)
T ss_pred HHHHHHHhcCCccchHHHHHHHHHHH-HhccccC--ChhhhhHHHHHHHHHHHhhcccccc
Confidence 33344444444355555544333332 3322211 1122444555566665555554443
No 260
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=93.31 E-value=10 Score=38.36 Aligned_cols=221 Identities=16% Similarity=0.153 Sum_probs=110.9
Q ss_pred hhcCCHHHHHHHHHHHHHHhcCccc---chhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChH
Q 004960 215 LASGEEDVAVIAFEIFDELIESPAP---LLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVI 291 (721)
Q Consensus 215 l~~~~~~~~~~a~~~l~~l~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~ 291 (721)
+-+++.+++..+++++..++..... +....++.++-..+ ..+.-.+..|.+|+.++..+.+..... ..+-.
T Consensus 34 lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL---~~~~~~~~ER~QALkliR~~l~~~~~~---~~~~~ 107 (371)
T PF14664_consen 34 LLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSL---DRDNKNDVEREQALKLIRAFLEIKKGP---KEIPR 107 (371)
T ss_pred HCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhh---cccCCChHHHHHHHHHHHHHHHhcCCc---ccCCH
Confidence 3345589999999999888776422 22223333333322 222224667999999999998763211 01223
Q ss_pred HHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcCcccc-HhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccH-
Q 004960 292 PILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVF-PPVFEFASVSCQNASPKYREAAVTAIGIISEGCA- 369 (721)
Q Consensus 292 ~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~-~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~- 369 (721)
.++..+.......+ ...+..+.+.+..++-..|+-+. ..-+..+.+.+.+.....-+..+.++-.+.+...
T Consensus 108 ~vvralvaiae~~~-------D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~t 180 (371)
T PF14664_consen 108 GVVRALVAIAEHED-------DRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRT 180 (371)
T ss_pred HHHHHHHHHHhCCc-------hHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcch
Confidence 44444544443322 45777777777766654443111 0112222333333322355555666666665432
Q ss_pred -HHHHH--hHHHHHHHHHhh----cCCCCH-hHHHHHHHHHHHHHhhhhHHHH-Hhh-hhHHHHHHHhccCCChHHHHHH
Q 004960 370 -EWMKE--KLESVLHIVLGA----LRDPEQ-FVRGAASFALGQFAEYLQPEIV-SHY-ESVLPCILNALEDESDEVKEKS 439 (721)
Q Consensus 370 -~~~~~--~l~~i~~~l~~~----l~d~~~-~vr~~a~~~l~~l~~~~~~~~~-~~~-~~~l~~l~~~l~~~~~~v~~~a 439 (721)
..+.+ .++.++..+... .++... .--..+..++..+.+.-+.-+. ..- -..+..++..|.-+.+++|...
T Consensus 181 R~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~I 260 (371)
T PF14664_consen 181 RKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAI 260 (371)
T ss_pred hhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHH
Confidence 22222 134444444333 222221 1233444444444433221000 000 1467777788888888888877
Q ss_pred HHHHHHHHH
Q 004960 440 YYALAAFCE 448 (721)
Q Consensus 440 ~~al~~l~~ 448 (721)
...+-.+..
T Consensus 261 ldll~dllr 269 (371)
T PF14664_consen 261 LDLLFDLLR 269 (371)
T ss_pred HHHHHHHHC
Confidence 777766654
No 261
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=93.25 E-value=2.3 Score=35.68 Aligned_cols=86 Identities=14% Similarity=0.130 Sum_probs=64.8
Q ss_pred HHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhh--hhHHHHHHHhccC---CChHHHHHHHHHHHHHHHhhhh
Q 004960 378 SVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY--ESVLPCILNALED---ESDEVKEKSYYALAAFCEDMGE 452 (721)
Q Consensus 378 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~~l~~l~~~l~~---~~~~v~~~a~~al~~l~~~~~~ 452 (721)
..+..|.+.+++++|.++..|+..|..+...++..+...+ ..++..+.+.+.. .+..|+..++..+......++.
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~ 116 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFGG 116 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 5677788889999999999999999999999988765433 2556666666654 3678999999999999888864
Q ss_pred c--cccchHHHHH
Q 004960 453 E--ILPFLDPLMG 463 (721)
Q Consensus 453 ~--~~~~~~~i~~ 463 (721)
. -.+++..+..
T Consensus 117 ~~~~~~~~~~~y~ 129 (133)
T cd03561 117 HSEDLPGIEDAYK 129 (133)
T ss_pred CCccchHHHHHHH
Confidence 2 2344444443
No 262
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=93.10 E-value=10 Score=37.66 Aligned_cols=113 Identities=12% Similarity=0.134 Sum_probs=83.2
Q ss_pred HHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHH----HHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhh--
Q 004960 378 SVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPE----IVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMG-- 451 (721)
Q Consensus 378 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~-- 451 (721)
+.+..+++....++-.|-..|+.++..+...-+.- +...++.++....+.+.+++.-.|..++..|+.++..-.
T Consensus 164 ~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~ 243 (335)
T PF08569_consen 164 ECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNF 243 (335)
T ss_dssp GGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGH
T ss_pred HHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHH
Confidence 34455777888899999999999999876654332 234567888888888999999999999999999986542
Q ss_pred hccccch--HHHHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q 004960 452 EEILPFL--DPLMGKLLAALENSPRNLQETCMSAIGSVAAA 490 (721)
Q Consensus 452 ~~~~~~~--~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~ 490 (721)
..+..|+ +.-+..+..++.+..+.+|-.|+.++...+..
T Consensus 244 ~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 244 NVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 2233444 35666788889999999999999999877765
No 263
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=93.10 E-value=2.2 Score=36.23 Aligned_cols=76 Identities=11% Similarity=0.111 Sum_probs=61.2
Q ss_pred HHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhh--hhHHHHHHHhcc-CCChHHHHHHHHHHHHHHHhhhhc
Q 004960 378 SVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY--ESVLPCILNALE-DESDEVKEKSYYALAAFCEDMGEE 453 (721)
Q Consensus 378 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~~l~~l~~~l~-~~~~~v~~~a~~al~~l~~~~~~~ 453 (721)
..+..+.+.+++.++.++..|+..|..+..+++..+...+ ..++..+.+.+. ..++.|+..++..+......++..
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRNK 119 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 5677788889999999999999999999999988766433 466677766665 456789999999999998887543
No 264
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=93.01 E-value=2.3 Score=35.75 Aligned_cols=77 Identities=12% Similarity=0.110 Sum_probs=61.9
Q ss_pred hhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccc-hH-HHHHHHHHhhcC---CChhHHHHHHHHHHHHHHHhh
Q 004960 418 ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPF-LD-PLMGKLLAALEN---SPRNLQETCMSAIGSVAAAAE 492 (721)
Q Consensus 418 ~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~-~~-~i~~~l~~~l~~---~~~~v~~~~l~~l~~l~~~~~ 492 (721)
...+..|.+.|+++++.++..|+..|..++.+++..+... .. ..+..+.+++.. .+..|+..+++.+.......+
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4678888899999999999999999999999998765432 22 566667777765 368899999999999988877
Q ss_pred hc
Q 004960 493 QA 494 (721)
Q Consensus 493 ~~ 494 (721)
.+
T Consensus 116 ~~ 117 (133)
T cd03561 116 GH 117 (133)
T ss_pred CC
Confidence 53
No 265
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.92 E-value=9.3 Score=36.82 Aligned_cols=110 Identities=10% Similarity=0.136 Sum_probs=78.0
Q ss_pred HHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhh-hHHHHHHHhccCCC--hHHHHHHHHHHHHHHHhhhh
Q 004960 376 LESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYE-SVLPCILNALEDES--DEVKEKSYYALAAFCEDMGE 452 (721)
Q Consensus 376 l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~~l~~l~~~l~~~~--~~v~~~a~~al~~l~~~~~~ 452 (721)
++.++...... ..+|.|...++.+++.++-..|+.....++ +.-...++.++-.. ..|+.++|+.+.+++....+
T Consensus 330 ~~~ii~l~~~h--~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~ 407 (461)
T KOG4199|consen 330 LDKIITLALRH--SDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAE 407 (461)
T ss_pred hHHHHHHHHHc--CCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhh
Confidence 34444444333 347889999999999999888776555554 34444556665432 45999999999999998877
Q ss_pred ccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHH
Q 004960 453 EILPFLDPLMGKLLAALENSPRNLQETCMSAIGSV 487 (721)
Q Consensus 453 ~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l 487 (721)
.-.+.+..=++.|......+++.++..+-.++..+
T Consensus 408 ~~~~~l~~GiE~Li~~A~~~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 408 NRTILLANGIEKLIRTAKANHETCEAAAKAALRDL 442 (461)
T ss_pred ccchHHhccHHHHHHHHHhcCccHHHHHHHHHHhc
Confidence 77788877777888777777777776666665544
No 266
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=92.73 E-value=0.77 Score=39.81 Aligned_cols=77 Identities=18% Similarity=0.320 Sum_probs=59.2
Q ss_pred ChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhcc
Q 004960 350 SPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALE 429 (721)
Q Consensus 350 ~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~ 429 (721)
....|.+|..++..+.+.+...+. +..+++.+..++.| +..||.-+...+.+++...+..+...++.+++.+-..+.
T Consensus 40 GLelRK~ayE~lytlLd~~~~~~~--~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~ 116 (169)
T PF08623_consen 40 GLELRKAAYECLYTLLDTCLSRID--ISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLS 116 (169)
T ss_dssp GGHHHHHHHHHHHHHHHSTCSSS---HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhh
Confidence 345677777777777766543322 45678889999999 999999999999999999988888888888888877775
No 267
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=92.72 E-value=1.5 Score=37.16 Aligned_cols=77 Identities=12% Similarity=0.167 Sum_probs=61.4
Q ss_pred hhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccch--HHHHHHHHHhhc-CCChhHHHHHHHHHHHHHHHhhhc
Q 004960 418 ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFL--DPLMGKLLAALE-NSPRNLQETCMSAIGSVAAAAEQA 494 (721)
Q Consensus 418 ~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~--~~i~~~l~~~l~-~~~~~v~~~~l~~l~~l~~~~~~~ 494 (721)
...+..|.+.|++.++.++..|+..|..+++++|..+...+ ..+++.|.+++. ..++.|+..++..+...+...++.
T Consensus 40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (142)
T cd03569 40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRNK 119 (142)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 46788888899999999999999999999999987555322 366666777665 457889999999999988887644
No 268
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=92.69 E-value=14 Score=38.44 Aligned_cols=106 Identities=19% Similarity=0.138 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHccccC--CCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhh
Q 004960 74 QLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVP--AGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQ 151 (721)
Q Consensus 74 ~~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~--~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~ 151 (721)
+..+.+..+++.++.+ +++.||...+++++.+...-.+ ...++.++..+.+.+-+..+.+|..|+.++..+-+...+
T Consensus 87 ~~V~~~~~h~lRg~es-kdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~n 165 (885)
T COG5218 87 ELVAGTFYHLLRGTES-KDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELN 165 (885)
T ss_pred HHHHHHHHHHHhcccC-cchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCC
Confidence 3555666667777765 8999999999999998764322 234677788888888888889999999999887654432
Q ss_pred cccccHHHHHHHHHHhhCCCCCHHHHHHHHHHH
Q 004960 152 TFRPHFADMQALLLKCLQDETSNRVRIAALKAI 184 (721)
Q Consensus 152 ~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l 184 (721)
. -+.+..++...++.+++.+||.+|+..+
T Consensus 166 e----en~~~n~l~~~vqnDPS~EVRr~allni 194 (885)
T COG5218 166 E----ENRIVNLLKDIVQNDPSDEVRRLALLNI 194 (885)
T ss_pred h----HHHHHHHHHHHHhcCcHHHHHHHHHHHe
Confidence 1 2344555566666558999999887655
No 269
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=92.60 E-value=1.9 Score=36.28 Aligned_cols=75 Identities=8% Similarity=0.141 Sum_probs=60.4
Q ss_pred hhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccch--HHHHHHHHHhhcC------CChhHHHHHHHHHHHHHH
Q 004960 418 ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFL--DPLMGKLLAALEN------SPRNLQETCMSAIGSVAA 489 (721)
Q Consensus 418 ~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~--~~i~~~l~~~l~~------~~~~v~~~~l~~l~~l~~ 489 (721)
...+..+.+.++++++.++..|+..|..+++++|..+...+ ..+++.+.+++.. .+..|+..++..+.....
T Consensus 37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 46788888999999999999999999999999987665432 3566667777643 468899999999998888
Q ss_pred Hhh
Q 004960 490 AAE 492 (721)
Q Consensus 490 ~~~ 492 (721)
..+
T Consensus 117 ~f~ 119 (139)
T cd03567 117 ELP 119 (139)
T ss_pred Hhc
Confidence 776
No 270
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=92.58 E-value=13 Score=37.63 Aligned_cols=220 Identities=15% Similarity=0.113 Sum_probs=126.7
Q ss_pred HHHhcCCChHHHHHHHHHHHHHhcCCCcHHHHHH---------HHhc-CCChhHHHHHHHHHHHhhhhh--hcCCCHHHH
Q 004960 9 LIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQ---------HLRT-AKTPNVRQLAAVLLRKKITGH--WAKLSPQLK 76 (721)
Q Consensus 9 l~~~~s~d~~~r~~A~~~L~~~~~~p~~~~~l~~---------il~~-~~~~~vr~~a~~~l~~~i~~~--w~~~~~~~~ 76 (721)
...+++++.++|..|...+.-+..++.++..+.+ -+.. +....-|..|.-+.|+.+... -+.+|
T Consensus 31 ~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~~---- 106 (371)
T PF14664_consen 31 QCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEIP---- 106 (371)
T ss_pred HHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccCC----
Confidence 3356778899999999999888888766655443 1222 345677999998888887652 22233
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhh--ccc
Q 004960 77 QLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQ--TFR 154 (721)
Q Consensus 77 ~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~--~~~ 154 (721)
..+.+.++..... ++...|+.+..++.+++-....--.+.+-+..+.+.+.++.....+..+.++-.+.+.... .+.
T Consensus 107 ~~vvralvaiae~-~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~ 185 (371)
T PF14664_consen 107 RGVVRALVAIAEH-EDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRKYLR 185 (371)
T ss_pred HHHHHHHHHHHhC-CchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhhhhc
Confidence 3455556665554 7888999999999998865432112444566666666655445555666666666654321 111
Q ss_pred --ccHHHHHHHHHHhh--CCCCCHHH-H-HHHHHHHHHhhhhcCChhh--HHHHHhhHHHHHHHHHHHhhcCCHHHHHHH
Q 004960 155 --PHFADMQALLLKCL--QDETSNRV-R-IAALKAIGSFLEFTNDGAE--VVKFREFIPSILNVSRQCLASGEEDVAVIA 226 (721)
Q Consensus 155 --~~~~~l~~~l~~~l--~~~~~~~v-r-~~a~~~l~~l~~~~~~~~~--~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a 226 (721)
-.++.++..+...- ...++.+. | ..+..++..+.+.-+.-.. ...+ .-+..++. .+..+++++++..
T Consensus 186 ~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~-~~lksLv~----~L~~p~~~ir~~I 260 (371)
T PF14664_consen 186 PGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDF-RGLKSLVD----SLRLPNPEIRKAI 260 (371)
T ss_pred CCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCc-hHHHHHHH----HHcCCCHHHHHHH
Confidence 22455555554441 11122222 3 3344455444332111000 0001 22334444 5566788899999
Q ss_pred HHHHHHHhcCcc
Q 004960 227 FEIFDELIESPA 238 (721)
Q Consensus 227 ~~~l~~l~~~~~ 238 (721)
++.+..+....+
T Consensus 261 ldll~dllrik~ 272 (371)
T PF14664_consen 261 LDLLFDLLRIKP 272 (371)
T ss_pred HHHHHHHHCCCC
Confidence 999988887654
No 271
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=92.47 E-value=22 Score=40.10 Aligned_cols=157 Identities=15% Similarity=0.131 Sum_probs=86.7
Q ss_pred HHHHHHHHHhhc----CCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhh----hh
Q 004960 79 VKQSLIESITLE----HSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTET----IG 150 (721)
Q Consensus 79 i~~~ll~~l~~e----~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~----~~ 150 (721)
+.-.+.++|.+. .++.+|...-.++..+....... .+++++|-+..++-++++..|.-|...+..+-.. ..
T Consensus 78 ~~~aiyE~L~~p~lLr~~~~l~~~F~~~f~~~~~~~~~~-~~~~~lPG~~~~Lf~~~~~~r~WA~~~~~~l~~~~~~~t~ 156 (727)
T PF12726_consen 78 LLLAIYECLCNPALLRDDEELRELFDAIFSSLQSKKPLK-LPKELLPGMTYFLFDGNPERRRWAERWWQRLKRPPYSITD 156 (727)
T ss_pred HHHHHHHHHhCHHHHcCcHHHHHHHHHHHHHHhccCCcc-ccccccchhhhhhhcCCHHHHHHHHHHHHHcCCCccCCch
Confidence 444556666531 35567777777777776543221 3378889999999899999999999999998654 23
Q ss_pred hcccc-cHHHHHHHHHHhhCC-CCCHHHHHHHHHHHHHhhhhcCChhhHHHHHh--hHHHHHHHHHHHhhcCCHHHHHHH
Q 004960 151 QTFRP-HFADMQALLLKCLQD-ETSNRVRIAALKAIGSFLEFTNDGAEVVKFRE--FIPSILNVSRQCLASGEEDVAVIA 226 (721)
Q Consensus 151 ~~~~~-~~~~l~~~l~~~l~~-~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~--~l~~ll~~l~~~l~~~~~~~~~~a 226 (721)
+.+.. ..+.+...+... +. ..++..-..--..+..++...+...-...+.. +-| +...+..-+.....+.....
T Consensus 157 ~~~~~av~~~l~~~l~~i-~~~~~~~~~~~~fW~g~~~Il~~ld~~~i~~~l~~~~~~~-i~~L~~~hL~~~~~~~l~~l 234 (727)
T PF12726_consen 157 EEFDWAVLDELSSHLYRI-SPNNYNPDSVIRFWSGFSLILRLLDKEQITHSLRALELDP-IYRLLLNHLSSNLSPPLPIL 234 (727)
T ss_pred hhhhHHHHHHHHHHHHHh-ccCCCChhHHHHHHHHHHHHHHHccHHHHHHHHhccccch-HHHHHHHHhhcccchhHHHH
Confidence 34432 334444555444 22 12333222233444555555432211222222 233 44444444444434555666
Q ss_pred HHHHHHHhcCcc
Q 004960 227 FEIFDELIESPA 238 (721)
Q Consensus 227 ~~~l~~l~~~~~ 238 (721)
++++..+.+..+
T Consensus 235 L~~l~~lL~k~~ 246 (727)
T PF12726_consen 235 LRCLSILLEKLG 246 (727)
T ss_pred HHHHHHHHHhCH
Confidence 677777776543
No 272
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=92.40 E-value=0.88 Score=34.58 Aligned_cols=69 Identities=19% Similarity=0.255 Sum_probs=54.8
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 004960 158 ADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFD 231 (721)
Q Consensus 158 ~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~ 231 (721)
.+++.++...+...++.++|...+.|+..++....+ ..+.-.+.+++.+.....++++++...|++++.
T Consensus 16 ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~-----~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 16 KDFLKPFEYIMSNNPSIDVRELILECILQILQSRGE-----NIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHH-----HHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 567777777766647899999999999999886533 256667888888888888888888888888764
No 273
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.89 E-value=0.4 Score=42.19 Aligned_cols=90 Identities=18% Similarity=0.211 Sum_probs=72.3
Q ss_pred HHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhh---hhc
Q 004960 377 ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDM---GEE 453 (721)
Q Consensus 377 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~---~~~ 453 (721)
...++.+...|.+.+..-|..|-..+..+....+..+.+.+++++..|-.+|...+.+|...++.+|..+.... +..
T Consensus 113 ~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~a 192 (262)
T KOG3961|consen 113 CPYLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAA 192 (262)
T ss_pred hHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchh
Confidence 35566777777665555666677777777777777788899999999999999999999999999999887765 578
Q ss_pred cccchHHHHHHHH
Q 004960 454 ILPFLDPLMGKLL 466 (721)
Q Consensus 454 ~~~~~~~i~~~l~ 466 (721)
+.||.-++++.+-
T Consensus 193 LVPfYRQlLp~~n 205 (262)
T KOG3961|consen 193 LVPFYRQLLPVLN 205 (262)
T ss_pred hhhHHHHhhhhhh
Confidence 9999999887654
No 274
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=91.53 E-value=6.6 Score=32.91 Aligned_cols=75 Identities=9% Similarity=0.104 Sum_probs=60.6
Q ss_pred HHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhh--hhHHHHHHHhccCCC--hHHHHHHHHHHHHHHHhhhh
Q 004960 378 SVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY--ESVLPCILNALEDES--DEVKEKSYYALAAFCEDMGE 452 (721)
Q Consensus 378 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~~l~~l~~~l~~~~--~~v~~~a~~al~~l~~~~~~ 452 (721)
..+..+.+.+++++|.+...|+..+..+...++..+...+ ..++..+.+.+.++. +.|+..++..+......++.
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~ 115 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFKN 115 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcC
Confidence 5677788899999999999999999999999988776543 467777777776543 33999999999988887753
No 275
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=91.39 E-value=3.3 Score=37.44 Aligned_cols=193 Identities=13% Similarity=0.147 Sum_probs=102.6
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhccCCh
Q 004960 465 LLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPIL 544 (721)
Q Consensus 465 l~~~l~~~~~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 544 (721)
+...++-.-...-..++.+++.+....|....+++..++..+-+.-. +++...|..+=.|+|...+++|++.+...
T Consensus 5 ~e~~L~~~y~~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~---~~~f~~~~~~e~~lgaAi~amGpe~vL~~- 80 (198)
T PF08161_consen 5 LESLLSYRYQHAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRE---SEDFSFRKELEQVLGAAIRAMGPEQVLSI- 80 (198)
T ss_pred HHHHhCcchHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHHHCCHHHHHHH-
Confidence 33344434445667889999999999998877777776666655443 33456777888999999999998654322
Q ss_pred HHHHHHHHhccCCCChhhHHHHHHHHHHHHHHcccCcccchhhhHHHHHhhccCCCCCccCCCCCccccccCCCCCCCCc
Q 004960 545 PPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDD 624 (721)
Q Consensus 545 ~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (721)
++.-+.. .++...-|.-.+-.+..-+ .+....-|.+.++|..-..-+..... . +..+.
T Consensus 81 ---lPLnl~~-~~~~~~~raWLLPlLr~~i--~~~~L~fF~~~~lPla~~~~~~~~~~----~-~~~~~----------- 138 (198)
T PF08161_consen 81 ---LPLNLDN-ADDSQPGRAWLLPLLRDHI--RNASLSFFVEEFLPLARRLRQKAQKA----S-EAGKS----------- 138 (198)
T ss_pred ---CCCCccC-CCcCCcccchhHHHHHHhc--cCCChHHHHHHHHHHHHHHHHHHHHH----h-hccch-----------
Confidence 1211110 1112223333444444322 34555666677777654332110000 0 00000
Q ss_pred hhhhhccccceeeecchhhhHHHHHHH-HHHHHHHccccccchHHHHHHHHHhcccCCChhHHHHHHHHHHHHH
Q 004960 625 EAHCERSVRNISVRTGVLDEKAAATQA-LGLFALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNIL 697 (721)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~k~~a~~~-l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~ 697 (721)
+.....++-..-+|. |=.++. .+..+...++.+.+.|...+.+ .+++|...+++|-.+|
T Consensus 139 ------------~~ak~~~~l~~QlWslLP~FC~-~P~D~~~~F~~~a~~L~~~L~~-~~~LR~~Ic~aL~~Lv 198 (198)
T PF08161_consen 139 ------------VEAKIYETLVQQLWSLLPGFCN-YPTDLAESFPSFAKLLGNALYD-QPDLRPIICQALRRLV 198 (198)
T ss_pred ------------HHHHHHHHHHHHHHHHhHHhcC-CcccHHHHHHHHHHHHHHHHhc-CcchHHHHHHHHHHHC
Confidence 001111222222221 111211 2334545567777778888766 3788988888887664
No 276
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=91.30 E-value=1.7 Score=37.69 Aligned_cols=130 Identities=12% Similarity=0.044 Sum_probs=86.6
Q ss_pred CcHHHHHHHHHHHHHHHcCccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHh--HHHHHHHHHhhcC--
Q 004960 313 LAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEK--LESVLHIVLGALR-- 388 (721)
Q Consensus 313 ~~~~~~a~~~l~~l~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~--l~~i~~~l~~~l~-- 388 (721)
.+.|..+.-++..+-...++.+-..+-+++...+...+......++.++..+..+.++..... -+.+++.+.+...
T Consensus 19 ~~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~ 98 (157)
T PF11701_consen 19 EEVRSHALVILSKLLDAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRK 98 (157)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-C
T ss_pred HhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcc
Confidence 356777776776665444444445566666666666555677788888888888887765554 2567777777776
Q ss_pred CCCHhHHHHHHHHHHHHHhhhhHHHHHh-hhhHHHHHHHhcc-CCChH-HHHHHHHHHH
Q 004960 389 DPEQFVRGAASFALGQFAEYLQPEIVSH-YESVLPCILNALE-DESDE-VKEKSYYALA 444 (721)
Q Consensus 389 d~~~~vr~~a~~~l~~l~~~~~~~~~~~-~~~~l~~l~~~l~-~~~~~-v~~~a~~al~ 444 (721)
.++..+...++.++..-|.. ...+.+ ....++.|-+..+ +++.. +|..|+-.|.
T Consensus 99 ~~~~~~~~~~lell~aAc~d--~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 99 SKDRKVQKAALELLSAACID--KSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp TS-HHHHHHHHHHHHHHTTS--HHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHcc--HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 77889999999999877655 333444 4677788888885 44444 6766665553
No 277
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=91.29 E-value=1.1 Score=36.00 Aligned_cols=70 Identities=13% Similarity=0.188 Sum_probs=52.0
Q ss_pred HHHHHHHhhc-CCCCHhHHHHHHHHHHHHHhhhhHHHHHhh--hhHHHHHHHhccCCChHHHHHHHHHHHHHHH
Q 004960 378 SVLHIVLGAL-RDPEQFVRGAASFALGQFAEYLQPEIVSHY--ESVLPCILNALEDESDEVKEKSYYALAAFCE 448 (721)
Q Consensus 378 ~i~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~ 448 (721)
.++..|.+.| .+.++.+...||.=||.++...|. ....+ -+.=..+++.+.+++++||..|+.|+..++.
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~-gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPN-GRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GG-GHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChh-HHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4566667777 345888889999999999998864 23333 2456678888999999999999999998764
No 278
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.28 E-value=14 Score=35.28 Aligned_cols=104 Identities=17% Similarity=0.120 Sum_probs=64.4
Q ss_pred HHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHH
Q 004960 381 HIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDP 460 (721)
Q Consensus 381 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~ 460 (721)
.-+...+.+++|.||..|..-+..+.......+..+-...++.+.+.+.+..+ ...|+.++.++....+-. ...+..
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~-~~ll~~ 82 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELR-KKLLQD 82 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHH-HHHHHH
Confidence 34667888999999999998877776653233445556788888998888765 556777888887665211 012223
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHH
Q 004960 461 LMGKLLAALENSPRNLQETCMSAIGSV 487 (721)
Q Consensus 461 i~~~l~~~l~~~~~~v~~~~l~~l~~l 487 (721)
++..+...+.++....-..++..++++
T Consensus 83 ~~k~l~~~~~~p~~~lad~~cmlL~NL 109 (353)
T KOG2973|consen 83 LLKVLMDMLTDPQSPLADLICMLLSNL 109 (353)
T ss_pred HHHHHHHHhcCcccchHHHHHHHHHHh
Confidence 455555555555433334444444443
No 279
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.18 E-value=38 Score=40.14 Aligned_cols=183 Identities=10% Similarity=0.000 Sum_probs=102.5
Q ss_pred HhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhc-cCCChHHHHHHHHHHHHHHHhhhh-ccccchHHHHHHHHHhh
Q 004960 392 QFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNAL-EDESDEVKEKSYYALAAFCEDMGE-EILPFLDPLMGKLLAAL 469 (721)
Q Consensus 392 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l-~~~~~~v~~~a~~al~~l~~~~~~-~~~~~~~~i~~~l~~~l 469 (721)
+.-...++.+.+........ ....+.++..+.... .+...++|.+++..+...+-.-.- ...+..++|-..+...+
T Consensus 1501 d~a~~~a~~~~~lm~~~~~~--~~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l 1578 (1710)
T KOG1851|consen 1501 DLAKNSALLCHSLMSLSWIG--HHLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLL 1578 (1710)
T ss_pred hHHHHHHHHHHHHHHhhccc--hhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHH
Confidence 34445555555555443321 112244555554333 344577998888888766544321 24456778888899999
Q ss_pred cCCChhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhccCChHHHHH
Q 004960 470 ENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVE 549 (721)
Q Consensus 470 ~~~~~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~ 549 (721)
++.+..+|+.+..+++-+.......+.+ .............+ .+......+...+|.++-++.- .+..++++.+.
T Consensus 1579 ~D~~i~vre~Aa~~Lsgl~~~s~~~~~~---~k~d~~~~~~~s~s-~~~i~~HgavlgLgA~VlafPy-~vP~wip~~L~ 1653 (1710)
T KOG1851|consen 1579 NDDQIEVREEAAKCLSGLLQGSKFQFVS---DKRDTTSNILQSKS-KDEIKAHGAVLGLGAIVLAFPY-VVPLWIPKPLM 1653 (1710)
T ss_pred cchHHHHHHHHHHHHHHHHhccccccch---Hhhhhhhhhhhhcc-hHHHHhhhhHHHHHHHHHhccc-cchhhhHHHHH
Confidence 9998999999999999888765544443 11122222222211 1222234566777777765531 23234444444
Q ss_pred HHHhccCCCChhhHHHHHHHHHHHHHHcccCcc
Q 004960 550 AAISGFGLEFSELREYTHGFFSNIAGVLEDGFA 582 (721)
Q Consensus 550 ~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~ 582 (721)
.+-... .+...++..+-.+++.+-....++|.
T Consensus 1654 ~Ls~fa-~e~~~i~~tvkktvseFrrth~D~W~ 1685 (1710)
T KOG1851|consen 1654 NLSSFA-RESAAIKQTVKKTVSEFRRTHADTWR 1685 (1710)
T ss_pred HHHhhc-CCchHHHHHHHHHHHHHHHHhhhhhh
Confidence 433322 33466777777777777666655553
No 280
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=91.01 E-value=26 Score=37.94 Aligned_cols=108 Identities=15% Similarity=0.186 Sum_probs=75.9
Q ss_pred cHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 004960 156 HFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIE 235 (721)
Q Consensus 156 ~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~ 235 (721)
.+..++..+..+..+ +-..|+..++..+..++...++. .+.++..+++ .+.++...+...|.-.|..+..
T Consensus 301 ly~rfievLe~lS~D-~L~~vk~raL~ti~~lL~~kPEq-----E~~LL~~lVN----KlGDpqnKiaskAsylL~~L~~ 370 (988)
T KOG2038|consen 301 LYFRFIEVLEELSKD-PLEEVKKRALKTIYDLLTNKPEQ-----ENNLLVLLVN----KLGDPQNKIASKASYLLEGLLA 370 (988)
T ss_pred HHHHHHHHHHHHccc-cHHHHHHHHHHHHHHHHhCCcHH-----HHHHHHHHHH----hcCCcchhhhhhHHHHHHHHHh
Confidence 445666666666667 88899999999999988765432 3556666776 5667777888888888888877
Q ss_pred CcccchhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 004960 236 SPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLA 277 (721)
Q Consensus 236 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~ 277 (721)
.+|..=.-.+..+-.+++. ++++....++|+.+|..+.
T Consensus 371 ~HPnMK~Vvi~EIer~~FR----pn~~~ra~Yyav~fLnQ~~ 408 (988)
T KOG2038|consen 371 KHPNMKIVVIDEIERLAFR----PNVSERAHYYAVIFLNQMK 408 (988)
T ss_pred hCCcceeehHHHHHHHHcc----cCccccceeehhhhhhhhH
Confidence 7766444444445444443 4556667788888888765
No 281
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=91.00 E-value=2.5 Score=35.91 Aligned_cols=76 Identities=12% Similarity=0.180 Sum_probs=60.5
Q ss_pred hhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccch--HHHHHHHHHhhcCC-Chh---HHHHHHHHHHHHHHH
Q 004960 417 YESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFL--DPLMGKLLAALENS-PRN---LQETCMSAIGSVAAA 490 (721)
Q Consensus 417 ~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~-~~~---v~~~~l~~l~~l~~~ 490 (721)
....+..|.+.|.+.++.++..|+..|..++.++|..+...+ ..++..|.+++... ... |++.++..+......
T Consensus 40 ~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 40 AKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence 357788889999999999999999999999999987665432 36777777766654 322 899999999988888
Q ss_pred hh
Q 004960 491 AE 492 (721)
Q Consensus 491 ~~ 492 (721)
.+
T Consensus 120 f~ 121 (140)
T PF00790_consen 120 FK 121 (140)
T ss_dssp TT
T ss_pred HC
Confidence 74
No 282
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=90.87 E-value=9 Score=32.48 Aligned_cols=112 Identities=10% Similarity=0.021 Sum_probs=73.1
Q ss_pred hcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcC-CCCHhHHHHHHHHHHHHHhhhhHHHHHhh--hhHHH
Q 004960 346 CQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALR-DPEQFVRGAASFALGQFAEYLQPEIVSHY--ESVLP 422 (721)
Q Consensus 346 l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~~l~ 422 (721)
+.++||...-.-+..+..= .. .-...+..+.+.+. +.++.|...|+..|..+.++++..+...+ ..++.
T Consensus 14 l~~~dw~~ileicD~In~~-~~-------~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~ 85 (141)
T cd03565 14 LQSEDWGLNMEICDIINET-ED-------GPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIK 85 (141)
T ss_pred CCCcCHHHHHHHHHHHhCC-CC-------cHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhh
Confidence 4556776655555544321 11 11255667777776 57999999999999999999998776533 46666
Q ss_pred H-HHHhccC---CChHHHHHHHHHHHHHHHhhhhc-cccchHHHHHHH
Q 004960 423 C-ILNALED---ESDEVKEKSYYALAAFCEDMGEE-ILPFLDPLMGKL 465 (721)
Q Consensus 423 ~-l~~~l~~---~~~~v~~~a~~al~~l~~~~~~~-~~~~~~~i~~~l 465 (721)
. |.+.+.. .+..|+..++..+......++.. -.+++..+...|
T Consensus 86 e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~y~~L 133 (141)
T cd03565 86 DVLVKLINPKNNPPTIVQEKVLALIQAWADAFRGSPDLTGVVEVYEEL 133 (141)
T ss_pred HHHHHHHcccCCCcHHHHHHHHHHHHHHHHHhCCCccchHHHHHHHHH
Confidence 5 6666652 34579999999999998887542 123444444433
No 283
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=90.83 E-value=7.2 Score=32.71 Aligned_cols=93 Identities=12% Similarity=0.088 Sum_probs=64.8
Q ss_pred HHHHHHhhhhccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhcchhhH--HHHHHHHHHHHhccCchhhhh
Q 004960 443 LAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYA--ERVLELLKIFMVLTNDEDLRS 520 (721)
Q Consensus 443 l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~~~ 520 (721)
+..+++..... ...-...+..|.+-+.++++.++..++..+..++..+|..|...+ ..++..|..++....+. ..+
T Consensus 21 ~l~icD~i~~~-~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~-~~V 98 (133)
T smart00288 21 ILEICDLINST-PDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPL-PLV 98 (133)
T ss_pred HHHHHHHHhCC-CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCc-HHH
Confidence 34445544333 234456778888889999999999999999999999998776543 23566666666543221 238
Q ss_pred HHHHHHHHHHHHHhhch
Q 004960 521 RARATELLGLVAESVGR 537 (721)
Q Consensus 521 ~~~~~~~l~~l~~~~~~ 537 (721)
+.++++.+...+..+..
T Consensus 99 k~kil~li~~W~~~f~~ 115 (133)
T smart00288 99 KKRILELIQEWADAFKN 115 (133)
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 88899999988877743
No 284
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=90.69 E-value=1.5 Score=35.38 Aligned_cols=74 Identities=15% Similarity=0.233 Sum_probs=49.6
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 004960 158 ADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIE 235 (721)
Q Consensus 158 ~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~ 235 (721)
-.++..|.+.|..+.++.+..-||.=++.++++.+....+..--+.-..+++ .+.+++++++..|+.++..++.
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~----Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVME----LMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHH----HTS-SSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHH----HhcCCCHHHHHHHHHHHHHHHH
Confidence 4667777778854257777777889999999988654332221223344555 6677999999999999988764
No 285
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.61 E-value=29 Score=37.81 Aligned_cols=199 Identities=14% Similarity=0.132 Sum_probs=128.4
Q ss_pred CcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhc-----------------CCCHHHHHHHHHHHHHHHhhcCCHHHHH
Q 004960 35 QVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWA-----------------KLSPQLKQLVKQSLIESITLEHSAPVRR 97 (721)
Q Consensus 35 ~~~~~l~~il~~~~~~~vr~~a~~~l~~~i~~~w~-----------------~~~~~~~~~i~~~ll~~l~~e~~~~vr~ 97 (721)
+.++.|++-+.+.+-+.-|+-|+..||..-+++-. ..+++....+.+.++..+.++..+.+-.
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~d 101 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMD 101 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcc
Confidence 56788888887888888899999998877654321 1344444444444444444432111110
Q ss_pred ---HHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhccccc---HHHHHHHHHHhhCCC
Q 004960 98 ---ASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPH---FADMQALLLKCLQDE 171 (721)
Q Consensus 98 ---~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~---~~~l~~~l~~~l~~~ 171 (721)
...+.=..|+.... .-++.+..+.+.+...|..+|..+...+..+....|..+... .|.-+..+...|.|
T Consensus 102 ds~qsdd~g~~iae~fi---k~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D- 177 (970)
T KOG0946|consen 102 DSTQSDDLGLWIAEQFI---KNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD- 177 (970)
T ss_pred cchhhhHHHHHHHHHHH---cCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh-
Confidence 11111111222111 236678888888888888999999999999998876554332 35566777888888
Q ss_pred CCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCc
Q 004960 172 TSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESP 237 (721)
Q Consensus 172 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~ 237 (721)
...-+|..++..|..++...+.-.....|.+.+..+++++..=-..+.--+...|+..+..+.+.+
T Consensus 178 srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N 243 (970)
T KOG0946|consen 178 SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNN 243 (970)
T ss_pred hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhC
Confidence 888899999999999888765544455567777777776543211122246677888888887754
No 286
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=90.45 E-value=16 Score=34.39 Aligned_cols=128 Identities=16% Similarity=0.202 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHcCccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHH-HHh---hc--CCC
Q 004960 317 RAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHI-VLG---AL--RDP 390 (721)
Q Consensus 317 ~~a~~~l~~l~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~-l~~---~l--~d~ 390 (721)
.....++..++.... ...+.+++.+....+.+....+..++..+..+-...+..+ +++..++.. ..+ .. .+.
T Consensus 19 ~~~L~~L~~l~~~~~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f-~~L~~~L~~~~~r~~~~~~~~~~ 96 (234)
T PF12530_consen 19 LPLLEALPSLACHKN-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF-PFLQPLLLLLILRIPSSFSSKDE 96 (234)
T ss_pred HHHHHHHHHHhccCc-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH-HHHHHHHHHHHhhcccccCCCcc
Confidence 334444555554432 5667777777777766666666666777777665544333 444444332 111 11 244
Q ss_pred CHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhc-cCCChHHHHHHHHHHHHHHHhh
Q 004960 391 EQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNAL-EDESDEVKEKSYYALAAFCEDM 450 (721)
Q Consensus 391 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l-~~~~~~v~~~a~~al~~l~~~~ 450 (721)
..........++..++...+. +..++++.+...+ ++.++.++..++.++..+++.-
T Consensus 97 ~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~ 153 (234)
T PF12530_consen 97 FWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAE 153 (234)
T ss_pred hHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh
Confidence 566667777888888888764 6677888888888 6777888999999999998443
No 287
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=90.38 E-value=4.6 Score=34.28 Aligned_cols=95 Identities=14% Similarity=0.149 Sum_probs=67.1
Q ss_pred HHHHHHHhhhhccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhcchhhH--HHHHHHHHHHHhccCc-hhh
Q 004960 442 ALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYA--ERVLELLKIFMVLTND-EDL 518 (721)
Q Consensus 442 al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~-~~~ 518 (721)
.+..+++..... .......+..|.+-+.+.++.++..++..+..++..+|..|...+ ..++..+..++..... +..
T Consensus 25 ~~l~icD~i~~~-~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~ 103 (140)
T PF00790_consen 25 LILEICDLINSS-PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPET 103 (140)
T ss_dssp HHHHHHHHHHTS-TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHS
T ss_pred HHHHHHHHHHcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchh
Confidence 344555555443 344567888899999999999999999999999999988776532 3355666665544322 222
Q ss_pred hhHHHHHHHHHHHHHhhch
Q 004960 519 RSRARATELLGLVAESVGR 537 (721)
Q Consensus 519 ~~~~~~~~~l~~l~~~~~~ 537 (721)
.++.++++.+...+..++.
T Consensus 104 ~Vk~k~l~ll~~W~~~f~~ 122 (140)
T PF00790_consen 104 PVKEKILELLQEWAEAFKS 122 (140)
T ss_dssp HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHCC
Confidence 3888999999999877743
No 288
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=90.26 E-value=22 Score=35.78 Aligned_cols=211 Identities=17% Similarity=0.144 Sum_probs=111.8
Q ss_pred hHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcCccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhh---
Q 004960 290 VIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISE--- 366 (721)
Q Consensus 290 ~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~--- 366 (721)
...+++.+.+.+..... .........++..-...++..+-+.+++.+.+.+++.....|.+-+..++.+..
T Consensus 20 s~~i~~~l~~~~~KE~n------E~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~ 93 (339)
T PF12074_consen 20 SSKIVQGLSPLLSKESN------EAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESP 93 (339)
T ss_pred HHHHHHHHHHHHHhhcC------HHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhcc
Confidence 45566667776665321 122333344444434444444567889999999999988899999999999875
Q ss_pred -c-cHHHHHHhHHHHHHHHHhhcCCCCHhHHH---HHHHHHHHHHhhhhHHHHH--hh---------hh--HHHHHHHhc
Q 004960 367 -G-CAEWMKEKLESVLHIVLGALRDPEQFVRG---AASFALGQFAEYLQPEIVS--HY---------ES--VLPCILNAL 428 (721)
Q Consensus 367 -~-~~~~~~~~l~~i~~~l~~~l~d~~~~vr~---~a~~~l~~l~~~~~~~~~~--~~---------~~--~l~~l~~~l 428 (721)
. ......+.++.++..+-+....+.+.... .++.++-.+.....+.... .. +. +-+.+...+
T Consensus 94 ~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl 173 (339)
T PF12074_consen 94 NSDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKL 173 (339)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhcc
Confidence 2 22344455556666665555655444221 1111111111100010000 00 00 001222221
Q ss_pred cCCChHHHHHHHHHHHHHHHhhhhccccc-hHHHHHHHHHhhcCC--ChhHHHHHHHHHHHHHHHhhhcchhhHHHHHHH
Q 004960 429 EDESDEVKEKSYYALAAFCEDMGEEILPF-LDPLMGKLLAALENS--PRNLQETCMSAIGSVAAAAEQAFIPYAERVLEL 505 (721)
Q Consensus 429 ~~~~~~v~~~a~~al~~l~~~~~~~~~~~-~~~i~~~l~~~l~~~--~~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~~ 505 (721)
.+ .+...-.+.++..+.........+. ....-+.+..++.+. .+.+|..++.++..+....++. +-..++..
T Consensus 174 ~~--~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~---l~~~li~~ 248 (339)
T PF12074_consen 174 AS--EEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL---LSKSLISG 248 (339)
T ss_pred CC--HhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH---HHHHHHHH
Confidence 11 1222334445555554444333322 355666777777777 7999999999999988877654 33344555
Q ss_pred HHHHHh
Q 004960 506 LKIFMV 511 (721)
Q Consensus 506 l~~~l~ 511 (721)
+.+.+.
T Consensus 249 l~~~l~ 254 (339)
T PF12074_consen 249 LWKWLS 254 (339)
T ss_pred HHHHHH
Confidence 555553
No 289
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=90.25 E-value=1.4 Score=34.77 Aligned_cols=62 Identities=16% Similarity=0.140 Sum_probs=53.3
Q ss_pred HHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHH-HHHhhhhHHHHHHHhccCC
Q 004960 370 EWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPE-IVSHYESVLPCILNALEDE 431 (721)
Q Consensus 370 ~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~~l~~l~~~l~~~ 431 (721)
+.+.++++.++..+...+.+-.+.||..++..|..+.+.+|+. +..+...+++..+..+...
T Consensus 3 ~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 3 ELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 4677889999999999999999999999999999999999987 5667778888777777644
No 290
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=89.95 E-value=17 Score=34.07 Aligned_cols=70 Identities=21% Similarity=0.212 Sum_probs=46.5
Q ss_pred hHHHHHHhccCC-cHHHHHHHHHHHHHhhhhhhhcccccH--HHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhh
Q 004960 119 LLPFLFQFSQSE-QEEHREVALILFSSLTETIGQTFRPHF--ADMQALLLKCLQDETSNRVRIAALKAIGSFLE 189 (721)
Q Consensus 119 ll~~l~~~l~~~-~~~~~~~al~~l~~i~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~ 189 (721)
+.|++...-++. -...|..++.++|.+++....+...++ .+++|++++.++. ++.-.|..|...+.+++.
T Consensus 96 LyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~-GselSKtvAtfIlqKIL~ 168 (262)
T PF04078_consen 96 LYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEF-GSELSKTVATFILQKILL 168 (262)
T ss_dssp GHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHH-S-HHHHHHHHHHHHHHHH
T ss_pred ehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHh-ccHHHHHHHHHHHHHHHc
Confidence 456664433332 246688999999999986544333333 5789999999988 788888888888888765
No 291
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=89.90 E-value=33 Score=37.36 Aligned_cols=394 Identities=13% Similarity=0.126 Sum_probs=191.3
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHhc-C---------CCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhcCCC
Q 004960 3 QSLELLLIQFLMPDNDARRQAEDQIKRLAK-D---------PQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLS 72 (721)
Q Consensus 3 ~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~-~---------p~~~~~l~~il~~~~~~~vr~~a~~~l~~~i~~~w~~~~ 72 (721)
-++.+++..+.++++..+..|..+++..-- + =+-+..|+.++. +.+.+++..|+=.|||++-.. -.
T Consensus 233 ~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~-~~~~evq~~acgaLRNLvf~~---~~ 308 (717)
T KOG1048|consen 233 PTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLD-HRNDEVQRQACGALRNLVFGK---ST 308 (717)
T ss_pred cccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhc-CCcHHHHHHHHHHHHhhhccc---CC
Confidence 457788999999999999999988876432 1 245777887764 568899999999999998653 12
Q ss_pred HHHHHHHHH-----HHHHHHhhcCCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhh
Q 004960 73 PQLKQLVKQ-----SLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTE 147 (721)
Q Consensus 73 ~~~~~~i~~-----~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~ 147 (721)
.+.+..|++ .+++.|....|..+|..++-++-.+. |.|.-....+-..+..+..
T Consensus 309 ~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLS---------------------S~D~lK~~ii~~al~tLt~ 367 (717)
T KOG1048|consen 309 DSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLS---------------------SNDALKMLIITSALSTLTD 367 (717)
T ss_pred cccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhccc---------------------chhHHHHHHHHHHHHHHHH
Confidence 233444442 56677765578888877773332222 2221111112222222221
Q ss_pred hhhhcccccHHHHHHHHHHhhCCC------CCHHHHHHHHHHHHHhhhhcCCh-hhHHHHHhhHHHHHHHHHHHhhcC--
Q 004960 148 TIGQTFRPHFADMQALLLKCLQDE------TSNRVRIAALKAIGSFLEFTNDG-AEVVKFREFIPSILNVSRQCLASG-- 218 (721)
Q Consensus 148 ~~~~~~~~~~~~l~~~l~~~l~~~------~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~~~l~~ll~~l~~~l~~~-- 218 (721)
.. +.++. +-..+ ....+-..+..||.++.....+. ........++..++.+++.+++..
T Consensus 368 ~v---I~P~S---------gw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~ 435 (717)
T KOG1048|consen 368 NV---IIPHS---------GWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDL 435 (717)
T ss_pred hh---ccccc---------ccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccc
Confidence 11 00000 00000 11233334445555443322111 112223456777777766555432
Q ss_pred CHHHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHh---------Hhhhhhc--
Q 004960 219 EEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYK---------YNSLKKH-- 287 (721)
Q Consensus 219 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~---------~~~~~~~-- 287 (721)
+......|...+..+.-....-+.+ ......-..-....... .. ....+++.-.+.. +..-..+
T Consensus 436 d~K~VENcvCilRNLSYrl~~Evp~---~~~~~~~~~~~~~~~~~-~~-~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG 510 (717)
T KOG1048|consen 436 DSKSVENCVCILRNLSYRLEAEVPP---KYRQVLANIARLPGVGP-PA-ESVGCFGFKKRKSDDNCDDLPIPERATAPKG 510 (717)
T ss_pred cchhHHHHHHHHhhcCchhhhhcCH---hhhhHhhcccccccCCC-cc-cccccccchhhhchhcccccCCcccccCCCC
Confidence 3334455555555443211100000 00000000000000000 00 1111111111110 0000000
Q ss_pred -C--ChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcC---cc----cc--HhHHHHHHhhhcCCChhhHh
Q 004960 288 -K--LVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA---KH----VF--PPVFEFASVSCQNASPKYRE 355 (721)
Q Consensus 288 -~--~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~---~~----~~--~~i~~~l~~~l~~~~~~~r~ 355 (721)
+ +-+.++...+.++..... ...-+++.-+|..+.-..+ .. ++ ...++.+.+.+..++..+..
T Consensus 511 ~e~Lw~p~vVr~Yl~Ll~~s~n------~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~ 584 (717)
T KOG1048|consen 511 SEWLWHPSVVRPYLLLLALSKN------DNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVR 584 (717)
T ss_pred ceeeecHHHHHHHHHHHHHhcc------hHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHH
Confidence 0 113344444444443221 2234445555555544333 11 11 23466778888899999999
Q ss_pred HHHHHHHHHhhccH--HHHHHhHHHHHHHHHhhcCCC------CHhHHHHHHHHHHHHHhhhhHHHHHhh-hhHHHHHHH
Q 004960 356 AAVTAIGIISEGCA--EWMKEKLESVLHIVLGALRDP------EQFVRGAASFALGQFAEYLQPEIVSHY-ESVLPCILN 426 (721)
Q Consensus 356 ~al~~l~~i~~~~~--~~~~~~l~~i~~~l~~~l~d~------~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~l~~l~~ 426 (721)
++.-++.+++.... +.+. ...++.|+.+|.+. +..+..++|.+|-++...-.......+ .+-++.|+.
T Consensus 585 s~a~~LrNls~d~rnk~lig---k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~ 661 (717)
T KOG1048|consen 585 SAAGALRNLSRDIRNKELIG---KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRL 661 (717)
T ss_pred HHHHHHhhhccCchhhhhhh---cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHH
Confidence 99999999987643 3333 34566777777544 346667788888888744323233333 345666665
Q ss_pred hccCC-ChHHHHHHHHHHHHHH
Q 004960 427 ALEDE-SDEVKEKSYYALAAFC 447 (721)
Q Consensus 427 ~l~~~-~~~v~~~a~~al~~l~ 447 (721)
...+. ++++-..|+..+..+=
T Consensus 662 I~~s~~S~k~~kaAs~vL~~lW 683 (717)
T KOG1048|consen 662 ISKSQHSPKEFKAASSVLDVLW 683 (717)
T ss_pred HhcccCCHHHHHHHHHHHHHHH
Confidence 54443 4566666666666553
No 292
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=89.89 E-value=14 Score=33.16 Aligned_cols=76 Identities=13% Similarity=0.153 Sum_probs=59.2
Q ss_pred cHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHH
Q 004960 335 FPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIV 414 (721)
Q Consensus 335 ~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 414 (721)
.+..++.+.+...+++...|..|+..++.+...- ...| ...+|.++.+..|+++.+|..|...+..+.+..+.-+.
T Consensus 6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qG--LvnP--~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~ 81 (187)
T PF12830_consen 6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQG--LVNP--KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVE 81 (187)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcC--CCCh--HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHH
Confidence 3455666677778899999999999999988641 1111 25788899999999999999999999999887765443
No 293
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=89.87 E-value=12 Score=37.24 Aligned_cols=149 Identities=9% Similarity=0.118 Sum_probs=89.2
Q ss_pred hHHHHHHhhhc-CCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCC--------------CHhHHHHHHHH
Q 004960 337 PVFEFASVSCQ-NASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDP--------------EQFVRGAASFA 401 (721)
Q Consensus 337 ~i~~~l~~~l~-~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~--------------~~~vr~~a~~~ 401 (721)
..++.+.+.++ ..+|+.-...+.-+.....+-.-.....++.+...+.+.+.|. ...+......+
T Consensus 141 ~~~~~il~~L~~e~dWeV~s~VL~hLp~qL~Nk~Lf~~~~I~~L~~~Lc~~i~d~~~~~~l~~~p~~~~~~D~~~~~~~~ 220 (356)
T PF03542_consen 141 EWFSVILQCLEHETDWEVYSYVLVHLPSQLSNKALFLGADIDQLRNALCSMICDRSFLESLSNKPTGFKRADLQVCVFPV 220 (356)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHhhhhHHhccCcHHHHHHHHHHHHhcccccccccCCCCCCCHHHHHHHHHHH
Confidence 34445555554 3477766665555555444321111111444444444443322 23456666677
Q ss_pred HHHHHhhhhHHHHH-hhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCChhHHHHH
Q 004960 402 LGQFAEYLQPEIVS-HYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETC 480 (721)
Q Consensus 402 l~~l~~~~~~~~~~-~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~ 480 (721)
|+.+..+-. .+.+ .-++++..+..++.+. ....+..+|.-.+-.++..+.++++.++..+.+...+.. +-..+
T Consensus 221 Ls~LisYh~-~~~k~~qd~iV~~l~~GL~s~---~a~~CI~aLtic~~EmP~s~~k~L~~iL~kLs~i~tt~~--~Ai~I 294 (356)
T PF03542_consen 221 LSALISYHS-HFSKQEQDEIVRALESGLGSK---TAKPCIHALTICCYEMPDSMKKLLPSILLKLSKISTTPN--MAIHI 294 (356)
T ss_pred HHHHHHHHH-hcCHhHHHHHHHHHHHHhccC---cHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccchh--hHHHH
Confidence 776665532 1112 2357888888888763 345678888888888998899999999999987766544 44467
Q ss_pred HHHHHHHHHHh
Q 004960 481 MSAIGSVAAAA 491 (721)
Q Consensus 481 l~~l~~l~~~~ 491 (721)
++-++.++...
T Consensus 295 LEFLs~L~~lP 305 (356)
T PF03542_consen 295 LEFLSSLSRLP 305 (356)
T ss_pred HHHHHHHhhCc
Confidence 77777776543
No 294
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=89.74 E-value=9.9 Score=34.40 Aligned_cols=59 Identities=15% Similarity=0.147 Sum_probs=41.8
Q ss_pred HhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHH
Q 004960 354 REAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPE 412 (721)
Q Consensus 354 r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 412 (721)
....+..++.+.+.++....+.+.+++..+-++-.+++...|..+-.++|...+.++++
T Consensus 17 w~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe 75 (198)
T PF08161_consen 17 WPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPE 75 (198)
T ss_pred HHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHH
Confidence 34455666666666665556667777777777777777778888888888888877764
No 295
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=89.63 E-value=29 Score=36.22 Aligned_cols=80 Identities=16% Similarity=0.198 Sum_probs=56.9
Q ss_pred CcHHHHHHHHHHHHHHHcCccccHhHHH-HHHhhhcCCChhhHhHHHHHHHHHhhccHHHHH-HhHHHHHHHHHhhcCCC
Q 004960 313 LAPDRAAAEVIDTMALNLAKHVFPPVFE-FASVSCQNASPKYREAAVTAIGIISEGCAEWMK-EKLESVLHIVLGALRDP 390 (721)
Q Consensus 313 ~~~~~~a~~~l~~l~~~~~~~~~~~i~~-~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~-~~l~~i~~~l~~~l~d~ 390 (721)
...|..+..+|+.+....+......++. .+...+++...-.|..+...+...+........ +..+.+.+.+...|.++
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~~~ 180 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILENP 180 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHcCC
Confidence 3457788999999999988767777776 588889999999999999988888876542111 11345556666666644
Q ss_pred CH
Q 004960 391 EQ 392 (721)
Q Consensus 391 ~~ 392 (721)
.+
T Consensus 181 ~~ 182 (441)
T PF12054_consen 181 EP 182 (441)
T ss_pred CC
Confidence 43
No 296
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=89.53 E-value=33 Score=36.73 Aligned_cols=83 Identities=16% Similarity=0.091 Sum_probs=57.3
Q ss_pred HHcCccccHhHHHHHHhhhcC-CChhhHhHHHHHHHHHhhcc-HHHHH-HhHHHHHHHHHhhcCCCCHhHHHHHHHHHHH
Q 004960 328 LNLAKHVFPPVFEFASVSCQN-ASPKYREAAVTAIGIISEGC-AEWMK-EKLESVLHIVLGALRDPEQFVRGAASFALGQ 404 (721)
Q Consensus 328 ~~~~~~~~~~i~~~l~~~l~~-~~~~~r~~al~~l~~i~~~~-~~~~~-~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~ 404 (721)
..+.++.+..++-.+...+.+ +.-..|-+.+..++.+++.. +.... +..+.+...+-..|.|.++-++..|+.+.+.
T Consensus 470 ~~l~~~~i~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~ 549 (559)
T PF14868_consen 470 QLLDPQLIEQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQ 549 (559)
T ss_pred HhcChHHHHHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 334455556666666666643 34447888888999888653 33332 3455555666667789999999999999999
Q ss_pred HHhhhh
Q 004960 405 FAEYLQ 410 (721)
Q Consensus 405 l~~~~~ 410 (721)
+++..+
T Consensus 550 FAe~T~ 555 (559)
T PF14868_consen 550 FAERTS 555 (559)
T ss_pred HhccCC
Confidence 998764
No 297
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=89.25 E-value=9.3 Score=35.31 Aligned_cols=76 Identities=21% Similarity=0.308 Sum_probs=56.4
Q ss_pred HhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHH
Q 004960 336 PPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVS 415 (721)
Q Consensus 336 ~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 415 (721)
+...+.+.+...|++.-.|.+++.++...... ...+.++..+...+.|++..||.+..|+|..++...++...+
T Consensus 119 ~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~~ 192 (213)
T PF08713_consen 119 PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVLE 192 (213)
T ss_dssp GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 55777888888888877777776655444333 455678888888899999999999999999999887765555
Q ss_pred hh
Q 004960 416 HY 417 (721)
Q Consensus 416 ~~ 417 (721)
++
T Consensus 193 ~l 194 (213)
T PF08713_consen 193 FL 194 (213)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 298
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=88.90 E-value=6.4 Score=38.55 Aligned_cols=101 Identities=12% Similarity=0.069 Sum_probs=73.3
Q ss_pred hhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHh--hhhHH
Q 004960 344 VSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSH--YESVL 421 (721)
Q Consensus 344 ~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~--~~~~l 421 (721)
+...+++|...-..|..++.--++. .+.+..+.+.+++.+|.|...|+..++.+...|+..+..- -.++.
T Consensus 19 e~nT~enW~~IlDvCD~v~~~~~~~--------kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~ 90 (462)
T KOG2199|consen 19 EKNTSENWSLILDVCDKVGSDPDGG--------KDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFT 90 (462)
T ss_pred cccccccHHHHHHHHHhhcCCCccc--------HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHH
Confidence 3456678888877776665544332 2557778899999999999999999999999998876642 24555
Q ss_pred HHHHHhcc-CCChHHHHHHHHHHHHHHHhhhh
Q 004960 422 PCILNALE-DESDEVKEKSYYALAAFCEDMGE 452 (721)
Q Consensus 422 ~~l~~~l~-~~~~~v~~~a~~al~~l~~~~~~ 452 (721)
..+...+. ...+.|+......+....+.++.
T Consensus 91 ~el~al~~~~~h~kV~~k~~~lv~eWsee~K~ 122 (462)
T KOG2199|consen 91 TELRALIESKAHPKVCEKMRDLVKEWSEEFKK 122 (462)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHHHHHhcc
Confidence 55555555 45677888877777777776653
No 299
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=88.85 E-value=57 Score=38.63 Aligned_cols=73 Identities=14% Similarity=0.096 Sum_probs=58.1
Q ss_pred HHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhh--hhHHHHHHHhccCCChHHHHHHHHHHHHHHHhh
Q 004960 377 ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY--ESVLPCILNALEDESDEVKEKSYYALAAFCEDM 450 (721)
Q Consensus 377 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~ 450 (721)
..++..++..|++.+..|...+|-+|-++.-..+. -++++ .+.++.+...+++.+..+...+..+|.+++..-
T Consensus 529 ~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~-DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 529 HNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPE-DQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHH-HHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 35677888899988888999999999998877644 34554 356888888889888888889999999987543
No 300
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=86.93 E-value=1.1 Score=28.49 Aligned_cols=40 Identities=25% Similarity=0.216 Sum_probs=27.5
Q ss_pred HHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHH
Q 004960 361 IGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFAL 402 (721)
Q Consensus 361 l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l 402 (721)
++.+.+..+..+. .+.+...+...+.|+++.||.+|..++
T Consensus 3 l~~iv~~dp~ll~--~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 3 LSSIVEKDPTLLD--SSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHhcCccccc--hHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 4444444333222 247788889999999999999998653
No 301
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=86.80 E-value=26 Score=32.35 Aligned_cols=78 Identities=14% Similarity=0.156 Sum_probs=44.0
Q ss_pred HHHHHHHHHhcCc---ccchhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhh
Q 004960 225 IAFEIFDELIESP---APLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLL 301 (721)
Q Consensus 225 ~a~~~l~~l~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l 301 (721)
.|+..+..++.+. ..|+..++|..+-.++.....+.-.+..|..++.+++.+++.....+.+.-.-..+++.++..+
T Consensus 98 naL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrim 177 (293)
T KOG3036|consen 98 NALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIM 177 (293)
T ss_pred HHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHH
Confidence 4444555555543 3456666776665555444333346789999999999999875544322111223444454444
Q ss_pred c
Q 004960 302 A 302 (721)
Q Consensus 302 ~ 302 (721)
.
T Consensus 178 e 178 (293)
T KOG3036|consen 178 E 178 (293)
T ss_pred h
Confidence 3
No 302
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=86.15 E-value=8.8 Score=38.07 Aligned_cols=104 Identities=12% Similarity=0.213 Sum_probs=63.6
Q ss_pred HHHHHHHHhhhhh-hhcccccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHH--hhhhcCChhhHHHHHhhHHHHHHHHHH
Q 004960 137 VALILFSSLTETI-GQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGS--FLEFTNDGAEVVKFREFIPSILNVSRQ 213 (721)
Q Consensus 137 ~al~~l~~i~~~~-~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~--l~~~~~~~~~~~~~~~~l~~ll~~l~~ 213 (721)
.-+.-++.+.+.. +.++......+...+..++++ ++-+|...|+....+ +.....++ ..-++|.+...+.+
T Consensus 318 mFL~ElEEILe~iep~eFqk~~~PLf~qia~c~sS-~HFQVAEraL~~wnNe~i~~Li~~n-----~~~ilPiiFpaLyr 391 (457)
T KOG2085|consen 318 MFLNELEEILEVIEPSEFQKIMVPLFRQIARCVSS-PHFQVAERALYLWNNEYIRSLISQN-----AEVILPIVFPALYR 391 (457)
T ss_pred eeHhhHHHHHHhcCHHHHHHHhHHHHHHHHHHcCC-hhHHHHHHHHHHHhhHHHHHHHHhc-----cceeeehhhHHHHH
Confidence 3444555555554 445555666777777888888 888888888766543 12221111 24467777777765
Q ss_pred HhhcC-CHHHHHHHHHHHHHHhcCcccchhhhHH
Q 004960 214 CLASG-EEDVAVIAFEIFDELIESPAPLLGDSVK 246 (721)
Q Consensus 214 ~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~ 246 (721)
..+.. +..+...++..+..+++..+.++.....
T Consensus 392 ~sk~hWN~~i~~l~~nvlk~f~emd~~LFeec~~ 425 (457)
T KOG2085|consen 392 NSKSHWNQAIHNLILNVLKTFMEMDPKLFEECLA 425 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 54321 3456667788888888877666655443
No 303
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=86.02 E-value=25 Score=32.37 Aligned_cols=152 Identities=20% Similarity=0.218 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHHHHHHhhcCCHHHHH
Q 004960 18 DARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEHSAPVRR 97 (721)
Q Consensus 18 ~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i~~~ll~~l~~e~~~~vr~ 97 (721)
..|+-|.+...+.... +-...+..-+-.+..-+.|..|+.++...... .+++.... +-..+..-.++.+..
T Consensus 34 ~lr~lak~~~~~~~~~-~~~~~l~~~L~~~~~~E~~~la~~il~~~~~~----~~~~~~~~----~~~~~~~~~~W~~~D 104 (213)
T PF08713_consen 34 DLRKLAKDIYKELKLS-EELYELADELWESGYREERYLALLILDKRRKK----LTEEDLEL----LEKWLPDIDNWATCD 104 (213)
T ss_dssp HHHHHHHHHHHHHCTS-HHHHHHHHHHHCSSCHHHHHHHHHHHHHCGGG------HHHHHH----HHHCCCCCCCHHHHH
T ss_pred HHHHHHHHHHhhcccc-hHHHHHHHHHcCCchHHHHHHHHHHhHHHhhh----hhHHHHHH----HHHHhccCCcchhhh
Confidence 3444444444554444 22223333344455678888888877654322 23222222 222223335777777
Q ss_pred HH-HHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCCHHH
Q 004960 98 AS-ANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRV 176 (721)
Q Consensus 98 ~~-~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v 176 (721)
.+ ..+++.+.... +.+.+.+.+.+.|++.-.|..++.++...... ...+.++..+...+.+ ++..|
T Consensus 105 ~~~~~~~~~~~~~~------~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~------~~~~~~l~~~~~~~~d-~~~~v 171 (213)
T PF08713_consen 105 SLCSKLLGPLLKKH------PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK------EDFDELLEIIEALLKD-EEYYV 171 (213)
T ss_dssp HHTHHHHHHHHHHH------GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG------CHHHHHHHHHHHCTTG-S-HHH
T ss_pred HHHHHHHHHHHHhh------HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHcCC-chHHH
Confidence 76 44456554321 67899999999999988888887666444333 4667888888888888 88999
Q ss_pred HHHHHHHHHHhhhhc
Q 004960 177 RIAALKAIGSFLEFT 191 (721)
Q Consensus 177 r~~a~~~l~~l~~~~ 191 (721)
|.+..++|..+....
T Consensus 172 q~ai~w~L~~~~~~~ 186 (213)
T PF08713_consen 172 QKAIGWALREIGKKD 186 (213)
T ss_dssp HHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999998776653
No 304
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=85.88 E-value=39 Score=33.55 Aligned_cols=53 Identities=17% Similarity=0.278 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHh
Q 004960 393 FVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCED 449 (721)
Q Consensus 393 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~ 449 (721)
.-+.-|.+.++++..+++. .....+.+-+....|.+-.||..|+.-|-.+|..
T Consensus 39 k~k~lasq~ip~~fk~fp~----la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~ 91 (460)
T KOG2213|consen 39 KEKRLASQFIPRFFKHFPS----LADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG 91 (460)
T ss_pred HHHHHHHHHHHHHHhhCch----hhhHHHHhhhccccccchhhHHHHHhccchhccC
Confidence 3455677888888888764 3345566667777888888998888877777655
No 305
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=85.82 E-value=2.1 Score=43.66 Aligned_cols=134 Identities=11% Similarity=0.150 Sum_probs=95.2
Q ss_pred hHHHHHHHHHhhccHHHHHHh--HHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhh-hhHHHHHHHhccCC
Q 004960 355 EAAVTAIGIISEGCAEWMKEK--LESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY-ESVLPCILNALEDE 431 (721)
Q Consensus 355 ~~al~~l~~i~~~~~~~~~~~--l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~l~~l~~~l~~~ 431 (721)
.+++.++.++.....- +... -.++...+++.|++|+.+|...+.-.+.++...+.+--..++ .+++..+.+.+.+.
T Consensus 407 ~a~~l~LkS~SrSV~~-LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK 485 (743)
T COG5369 407 VAIVLFLKSMSRSVTF-LRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK 485 (743)
T ss_pred HHHHHHHHHhhHHHHH-HHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc
Confidence 3445566666554321 1111 136788899999998888887777777666555544323344 47788888888877
Q ss_pred ChHHHHHHHHHHHHHHHhhhh--ccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q 004960 432 SDEVKEKSYYALAAFCEDMGE--EILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAA 489 (721)
Q Consensus 432 ~~~v~~~a~~al~~l~~~~~~--~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~ 489 (721)
+...|.+..|.+..+.-++.+ .+.+....=++.++...+++...++.+.+..+.++..
T Consensus 486 DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc 545 (743)
T COG5369 486 DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTC 545 (743)
T ss_pred hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccc
Confidence 788999999999999988854 3555555567788888899999999999999988754
No 306
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=85.69 E-value=3.7 Score=29.87 Aligned_cols=56 Identities=20% Similarity=0.221 Sum_probs=41.2
Q ss_pred hHhHHHHHHHHHhhccH-HHHHHhHHHHHHHHHhhcC-CCCHhHHHHHHHHHHHHHhhh
Q 004960 353 YREAAVTAIGIISEGCA-EWMKEKLESVLHIVLGALR-DPEQFVRGAASFALGQFAEYL 409 (721)
Q Consensus 353 ~r~~al~~l~~i~~~~~-~~~~~~l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~ 409 (721)
...++++++|.++.... -.+.+ -.++++.+++... ++...+|-.++++|+-++...
T Consensus 3 ~lKaaLWaighIgss~~G~~lL~-~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~ 60 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSPLGIQLLD-ESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTE 60 (73)
T ss_pred HHHHHHHHHHhHhcChHHHHHHh-hcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCH
Confidence 46789999999987532 11111 1257777777765 778999999999999998763
No 307
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=85.62 E-value=24 Score=42.65 Aligned_cols=140 Identities=14% Similarity=0.196 Sum_probs=87.3
Q ss_pred HHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHH
Q 004960 369 AEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCE 448 (721)
Q Consensus 369 ~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~ 448 (721)
...+..+++.++...-.++.++++.|+.-+......+...+.... -+.++..|+..+.+.+..-...|+..|..++.
T Consensus 426 ~~vL~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~~---qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~ 502 (1426)
T PF14631_consen 426 SEVLKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSYC---QQEVVGALVTHIGSGNSQEVDAALDVLCELAE 502 (1426)
T ss_dssp HHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HHH---HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccchh---HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHh
Confidence 344556788888888888899999999999999888888774311 24677777777755554444688999999998
Q ss_pred hhhhccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHhc
Q 004960 449 DMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVL 512 (721)
Q Consensus 449 ~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~ 512 (721)
..+..+.||.. ++..++..+.+-+..=-..++..++.++-..+..-....+++.-.+.+.+..
T Consensus 503 ~~~~~l~~fa~-~l~giLD~l~~Ls~~qiR~lf~il~~La~~~~~~~s~i~del~ivIRKQLss 565 (1426)
T PF14631_consen 503 KNPSELQPFAT-FLKGILDYLDNLSLQQIRKLFDILCTLAFSDSSSSSSIQDELHIVIRKQLSS 565 (1426)
T ss_dssp H-HHHHHHTHH-HHHGGGGGGGG--HHHHHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHT-
T ss_pred ccHHHHHHHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHhhcC
Confidence 88777777754 3334444454433322345677777777544333223344444455555543
No 308
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=85.60 E-value=21 Score=39.46 Aligned_cols=93 Identities=23% Similarity=0.225 Sum_probs=71.4
Q ss_pred CcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccccH-HHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCCh
Q 004960 116 WPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHF-ADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDG 194 (721)
Q Consensus 116 ~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~ 194 (721)
-..++..|-+.+.. +..|..++..|+.++...+..+.... ..+++-++++|.-+.+..+-..|+.+|..++...+..
T Consensus 68 ~K~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~ 145 (668)
T PF04388_consen 68 DKHLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSS 145 (668)
T ss_pred HHHHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccch
Confidence 35688888888864 47889999999999988766554333 3677788888875488889999999999999887543
Q ss_pred hhHHHHHhhHHHHHHHHHHHh
Q 004960 195 AEVVKFREFIPSILNVSRQCL 215 (721)
Q Consensus 195 ~~~~~~~~~l~~ll~~l~~~l 215 (721)
...++|.++.++.+++
T Consensus 146 -----l~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 146 -----LGPHLPDLFNIFGRLL 161 (668)
T ss_pred -----hhHHHHHHHHHHHHHH
Confidence 4678888888776654
No 309
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=85.59 E-value=1.1 Score=28.06 Aligned_cols=29 Identities=28% Similarity=0.529 Sum_probs=25.8
Q ss_pred hHHHHHHHhccCCChHHHHHHHHHHHHHH
Q 004960 419 SVLPCILNALEDESDEVKEKSYYALAAFC 447 (721)
Q Consensus 419 ~~l~~l~~~l~~~~~~v~~~a~~al~~l~ 447 (721)
+.++.|++.+++++..++..++++|.+++
T Consensus 12 g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 12 GGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 57888899888888999999999999885
No 310
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=85.32 E-value=24 Score=31.07 Aligned_cols=99 Identities=10% Similarity=0.109 Sum_probs=71.4
Q ss_pred HhHHHHHHHHHHHHHhhhhHHHH---------Hhh-hhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHH
Q 004960 392 QFVRGAASFALGQFAEYLQPEIV---------SHY-ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPL 461 (721)
Q Consensus 392 ~~vr~~a~~~l~~l~~~~~~~~~---------~~~-~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i 461 (721)
...|.-+++.+..+.+..++.+. ..+ ..+.+.+++.+.+++..+-..++..+..+....+..+...++.+
T Consensus 36 ~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~ 115 (168)
T PF12783_consen 36 ERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVF 115 (168)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777666555444 112 56778888888777778888899999999999988888878888
Q ss_pred HHHHHH-hhcCCC--hhHHHHHHHHHHHHHHH
Q 004960 462 MGKLLA-ALENSP--RNLQETCMSAIGSVAAA 490 (721)
Q Consensus 462 ~~~l~~-~l~~~~--~~v~~~~l~~l~~l~~~ 490 (721)
+..+.. .+.... ..-|..+++++..+...
T Consensus 116 l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~ 147 (168)
T PF12783_consen 116 LSHIILRILESDNSSLWQKELALEILRELCKD 147 (168)
T ss_pred HHHHHHHHHccCCCcHHHHHHHHHHHHHHHhC
Confidence 877776 555443 35677788888777653
No 311
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=85.27 E-value=1.5 Score=27.89 Aligned_cols=41 Identities=22% Similarity=0.127 Sum_probs=28.8
Q ss_pred HHHHHHHHccccccchHHHHHHHHHhcccCCChhHHHHHHHHH
Q 004960 651 ALGLFALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAVFAL 693 (721)
Q Consensus 651 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l 693 (721)
+++.++..-+.-+. .+.+...+.+.+.|.++.||++|.++|
T Consensus 2 ~l~~iv~~dp~ll~--~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 2 ALSSIVEKDPTLLD--SSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred hHHHHHhcCccccc--hHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 34455444443332 347788889999999999999998764
No 312
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=84.89 E-value=1.4 Score=27.58 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=25.0
Q ss_pred HHHHHHHhhcCCCCHhHHHHHHHHHHHHH
Q 004960 378 SVLHIVLGALRDPEQFVRGAASFALGQFA 406 (721)
Q Consensus 378 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~ 406 (721)
..++.+.++++++++.++..++++|++++
T Consensus 12 g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 12 GGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 35777888888889999999999999876
No 313
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=84.82 E-value=4.1 Score=31.47 Aligned_cols=60 Identities=18% Similarity=0.150 Sum_probs=45.5
Q ss_pred CCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCCh--HHHHHHHHHHHHHHH
Q 004960 389 DPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESD--EVKEKSYYALAAFCE 448 (721)
Q Consensus 389 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~--~v~~~a~~al~~l~~ 448 (721)
++++.+|..|+..++.++..++......-+.++..+.+.+.|++. ..+-.|+.+|..+-.
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~ 78 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGP 78 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 568999999999999999988765444556788888888887753 356667777776643
No 314
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=84.82 E-value=37 Score=32.38 Aligned_cols=75 Identities=16% Similarity=0.231 Sum_probs=57.0
Q ss_pred hhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhc
Q 004960 416 HYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQA 494 (721)
Q Consensus 416 ~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~~ 494 (721)
+--+++..++..+.+..+.+|..+...|..++...+.. .|+..+++..+.+.++++.. .+|++.+..+....|..
T Consensus 185 ~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~-~~~~~dlispllrlL~t~~~---~eAL~VLd~~v~~s~s~ 259 (262)
T PF14225_consen 185 HEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMR-SPHGADLISPLLRLLQTDLW---MEALEVLDEIVTRSGSP 259 (262)
T ss_pred hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCC-CCcchHHHHHHHHHhCCccH---HHHHHHHHHHHhhcccc
Confidence 44567777888888888899999999999999887544 45778899999999887644 46677776666665543
No 315
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=84.78 E-value=1.2 Score=33.90 Aligned_cols=59 Identities=20% Similarity=0.164 Sum_probs=46.1
Q ss_pred hhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhH
Q 004960 352 KYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQP 411 (721)
Q Consensus 352 ~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 411 (721)
..|.+++.++++++...+..+.+.+++++..|....+| ...|+..+-.+++.+-+.-.+
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH~D 62 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTHQD 62 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCcc
Confidence 57899999999999999988888999999998888886 667888888999888765544
No 316
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.41 E-value=1e+02 Score=37.09 Aligned_cols=266 Identities=13% Similarity=0.183 Sum_probs=136.8
Q ss_pred CCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhh-hccc---ccHHHHHHHHHH
Q 004960 91 HSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIG-QTFR---PHFADMQALLLK 166 (721)
Q Consensus 91 ~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~-~~~~---~~~~~l~~~l~~ 166 (721)
.+..+|..+.++++.-. +..|..++..+-..-.+.+.+..+.+...+..+..... ..+. .-+.+.++.+..
T Consensus 1049 ~s~~Irelv~rC~~~ni-----kSGWk~if~i~~~aA~~~~~~iv~~~fe~v~~i~~~~f~~~~~~~~~sf~d~v~cl~~ 1123 (1514)
T KOG0929|consen 1049 SSAEIRELVVRCISSNI-----KSGWKNIFKIFTTAASDSSKNIVELAFETVSKILQELFENVFPQEMDSFKDCVKCLEE 1123 (1514)
T ss_pred CcchhHHHHHhhhhhhh-----hhhhhHHHHHHHHhhccchhhHHHHhHHHHHHHHHHhhhhhchhhhHHHHHHHHHHHH
Confidence 56778888888888222 24799999888888877777777777777776554432 2221 112333333333
Q ss_pred hhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcccchhhhHH
Q 004960 167 CLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVK 246 (721)
Q Consensus 167 ~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~ 246 (721)
...+...+.....++..+..++....+.. ..+ .+.+++.. .........+|
T Consensus 1124 F~~~~~~~~~s~~aI~~lr~ca~k~~e~~-----------~~~----~~~~~~~~--------------~~~~~~~~wfP 1174 (1514)
T KOG0929|consen 1124 FTKNLGFPDDSLNAIRFLRLCALKLAEGV-----------YNE----KLKVGKDS--------------EFDVWNSGWFP 1174 (1514)
T ss_pred HHHhcCCCccchHHHHHHHHHHHHhcccc-----------chh----hccccccc--------------ccccceeeeeh
Confidence 33321222222223322222222221110 000 00001110 00001111222
Q ss_pred HHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHH
Q 004960 247 SIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTM 326 (721)
Q Consensus 247 ~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l 326 (721)
.+...-.-. . +....+|..+++.+..+....+..+.+ ++...++..++|......-+.+ .+
T Consensus 1175 ~l~~ls~i~-~--~~~~~vr~~al~vlF~il~~~g~~F~~-~~We~v~~~~fpIF~~~~~~~~-----~~---------- 1235 (1514)
T KOG0929|consen 1175 MLFQLSKII-N--DYRLEVRKRALEVLFDILKEHGDDFSK-EFWEDVFRILFPIFDNVKLDED-----ES---------- 1235 (1514)
T ss_pred hHhhhhHHh-h--ccHHHHHHHHHHHHHHHHHhhhhhccH-HHHHHHHHheeecccccCcccc-----hh----------
Confidence 222211111 1 125678899999888888776666544 4566677766666544321110 00
Q ss_pred HHHcCccccHhHHHHHHhhhcCCChhh--HhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHH
Q 004960 327 ALNLAKHVFPPVFEFASVSCQNASPKY--REAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQ 404 (721)
Q Consensus 327 ~~~~~~~~~~~i~~~l~~~l~~~~~~~--r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~ 404 (721)
...+|.. -..|++++..+....-+.+...++.++..+..+.+.++..+-.....|+.+
T Consensus 1236 --------------------~~~eW~~tT~~~Al~~~v~lf~~~~~~l~~lL~~~~~ll~~ci~~~n~~la~~g~~cl~~ 1295 (1514)
T KOG0929|consen 1236 --------------------EKDEWLSTTCNHALQALVDLFTQFFKQLNNLLPKVLGLLVGCIKQDNQQLARIGTSCLLQ 1295 (1514)
T ss_pred --------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhHHhHHHHHHH
Confidence 0111321 112344444444444445556678888888889988888888888999998
Q ss_pred HHhhhhHHHHH-hhhhHHHHHHHhcc
Q 004960 405 FAEYLQPEIVS-HYESVLPCILNALE 429 (721)
Q Consensus 405 l~~~~~~~~~~-~~~~~l~~l~~~l~ 429 (721)
+....+..+.+ .+..+...+.+.+.
T Consensus 1296 l~~~n~~~fse~~Wde~~~~~~e~~~ 1321 (1514)
T KOG0929|consen 1296 LVSSNGEKFSEEDWDEICNCILEAFK 1321 (1514)
T ss_pred HHHhcccccCHhhHHHHHHHHHHHHH
Confidence 88776655543 35555555555444
No 317
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=84.19 E-value=17 Score=29.52 Aligned_cols=72 Identities=17% Similarity=0.144 Sum_probs=51.8
Q ss_pred ccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHH--HHHHHHHh----hc--CCCCHhHHHHHHHHHHHH
Q 004960 334 VFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLE--SVLHIVLG----AL--RDPEQFVRGAASFALGQF 405 (721)
Q Consensus 334 ~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~--~i~~~l~~----~l--~d~~~~vr~~a~~~l~~l 405 (721)
....++..+...+.+.+|....-|+..+-.++.++++.+...+. ..+..+++ .. .+.+..||..+...+...
T Consensus 34 ~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 34 GPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred cHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 45678888888899999999999999999999999876665432 12222222 11 255888998888877654
No 318
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.87 E-value=11 Score=35.87 Aligned_cols=105 Identities=18% Similarity=0.189 Sum_probs=72.9
Q ss_pred HHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHH-hhhh
Q 004960 341 FASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVS-HYES 419 (721)
Q Consensus 341 ~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~-~~~~ 419 (721)
.+..++.+.++.+|.+|+.-+..+.......+..+-...++.+.+++++..+ -..|+.++.+++... ...+ .+..
T Consensus 7 elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~--~l~~~ll~~ 82 (353)
T KOG2973|consen 7 ELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKE--ELRKKLLQD 82 (353)
T ss_pred HHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhH--HHHHHHHHH
Confidence 3445677888999999987666555444455555666778888999988877 556778888888763 2333 3455
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHHHh
Q 004960 420 VLPCILNALEDESDEVKEKSYYALAAFCED 449 (721)
Q Consensus 420 ~l~~l~~~l~~~~~~v~~~a~~al~~l~~~ 449 (721)
++..++..+.++....-...|..+.++.+.
T Consensus 83 ~~k~l~~~~~~p~~~lad~~cmlL~NLs~~ 112 (353)
T KOG2973|consen 83 LLKVLMDMLTDPQSPLADLICMLLSNLSRD 112 (353)
T ss_pred HHHHHHHHhcCcccchHHHHHHHHHHhccC
Confidence 666777777777556667777777777543
No 319
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=83.86 E-value=26 Score=29.75 Aligned_cols=81 Identities=9% Similarity=0.049 Sum_probs=55.5
Q ss_pred chHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHHHhhhcchhhH--HHHHHH-HHHHHhccCchhhhhHHHHHHHHHHHH
Q 004960 457 FLDPLMGKLLAALEN-SPRNLQETCMSAIGSVAAAAEQAFIPYA--ERVLEL-LKIFMVLTNDEDLRSRARATELLGLVA 532 (721)
Q Consensus 457 ~~~~i~~~l~~~l~~-~~~~v~~~~l~~l~~l~~~~~~~~~~~~--~~i~~~-l~~~l~~~~~~~~~~~~~~~~~l~~l~ 532 (721)
.-...+..|.+-+.. .++.+...++..+..++..+|..|.... ..++.- |.+++....+....++.++++.+...+
T Consensus 35 ~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~ 114 (141)
T cd03565 35 GPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWA 114 (141)
T ss_pred cHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHH
Confidence 345677777777764 5788888899999999999998776432 234443 555554322233467888899998888
Q ss_pred Hhhch
Q 004960 533 ESVGR 537 (721)
Q Consensus 533 ~~~~~ 537 (721)
..+..
T Consensus 115 ~~f~~ 119 (141)
T cd03565 115 DAFRG 119 (141)
T ss_pred HHhCC
Confidence 77754
No 320
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=83.49 E-value=29 Score=30.11 Aligned_cols=141 Identities=14% Similarity=0.138 Sum_probs=79.3
Q ss_pred HHHHHHHHhc-CCChhHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHc-------
Q 004960 37 VPALVQHLRT-AKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAK------- 108 (721)
Q Consensus 37 ~~~l~~il~~-~~~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~------- 108 (721)
+..++.-+.. ..++.+|..|.+.+-+.+... .++..+.+.+.+-..+. +.+..-...+..+++.+..
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l~~~----~~~~~~~~~~~i~~~~~-~~~~d~~i~~~~~l~~lfp~~~dv~~ 79 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLLDAA----REEFKEKISDFIESLLD-EGEMDSLIIAFSALTALFPGPPDVGS 79 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHC-CHHCCHHHHHHHHHHHHCTTTHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHc-cccchhHHHHHHHHHHHhCCCHHHHH
Confidence 3444555554 568899999999998886322 22233333333323332 2111122333444444432
Q ss_pred cccCCCCCcchHHHHHHhcc--CCcHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCCHH-HHHHHHHHHH
Q 004960 109 YAVPAGEWPDLLPFLFQFSQ--SEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNR-VRIAALKAIG 185 (721)
Q Consensus 109 ~~~~~~~~~~ll~~l~~~l~--~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~-vr~~a~~~l~ 185 (721)
..+ .-+++++.+...+. +++......++.++..-+..... -.......++.+.+..+.+++.. +|..|+-+|.
T Consensus 80 ~l~---~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~-r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 80 ELF---LSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSC-RTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp HHC---CTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHH-HHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred HHH---hhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHH-HHHHHHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 111 23567888888887 67778888888888776633211 01245667778888886536666 8888877766
Q ss_pred H
Q 004960 186 S 186 (721)
Q Consensus 186 ~ 186 (721)
+
T Consensus 156 K 156 (157)
T PF11701_consen 156 K 156 (157)
T ss_dssp H
T ss_pred c
Confidence 5
No 321
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=83.41 E-value=3.4 Score=31.55 Aligned_cols=55 Identities=24% Similarity=0.300 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHHHHccccccchHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHH
Q 004960 644 EKAAATQALGLFALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTA 699 (721)
Q Consensus 644 ~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~ 699 (721)
.|.+++-.|+.++.+.+-.+-+|++.++..|.+..++ ...|+..+-++|+.+-+.
T Consensus 5 ~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrt 59 (90)
T PF11919_consen 5 RRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRT 59 (90)
T ss_dssp HHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHh
Confidence 5889999999999999999999999999999999887 568999999999988654
No 322
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=83.29 E-value=41 Score=31.65 Aligned_cols=57 Identities=18% Similarity=0.187 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhcCc---ccchhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHh
Q 004960 224 VIAFEIFDELIESP---APLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYK 280 (721)
Q Consensus 224 ~~a~~~l~~l~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~ 280 (721)
..|+..+..++.+. ..+++.+++-.+-.++...+....-+..|..++.+++.+++..
T Consensus 68 cnaLaLlQ~vAshpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d 127 (262)
T PF04078_consen 68 CNALALLQCVASHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTD 127 (262)
T ss_dssp HHHHHHHHHHHH-TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHcChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCC
Confidence 45566666666654 3455555555444444332222223678888999999988643
No 323
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=82.85 E-value=42 Score=33.62 Aligned_cols=211 Identities=11% Similarity=0.056 Sum_probs=111.5
Q ss_pred HHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHH-HHHhccCCChH-HHHHHHHHHHHHHHhhhhcc-
Q 004960 378 SVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPC-ILNALEDESDE-VKEKSYYALAAFCEDMGEEI- 454 (721)
Q Consensus 378 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~-l~~~l~~~~~~-v~~~a~~al~~l~~~~~~~~- 454 (721)
..+-.++.++++++|+-|.-.-..|-++...+.. ...+...-+.- +.+.+-+.... -....+..|+.++....-.+
T Consensus 177 ~FvlkLLdLFdSEDpRERe~LKT~LhrIygKfl~-~r~firk~iNNif~~FIyEte~hnGIaELLEIlgSiIngfAlPlK 255 (457)
T KOG2085|consen 177 KFVLKLLDLFDSEDPREREFLKTILHRIYGKFLV-HRPFIRKSINNIFLRFIYETERHNGIAELLEILGSIINGFALPLK 255 (457)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhh-hHHHHHHhhcchhhhhcccccccCCHHHHHHHHHHhcCcccCcch
Confidence 4567788889999999998887777776553321 12222211111 12222221110 11223344444444332111
Q ss_pred ccchHHHHHHHHHhhcCCCh-hHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHH
Q 004960 455 LPFLDPLMGKLLAALENSPR-NLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAE 533 (721)
Q Consensus 455 ~~~~~~i~~~l~~~l~~~~~-~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~ 533 (721)
..+.--++..|.++-.-..- ....+.-.|+..++.. -....+.++-.+.+.+..+++...- .-+.-+..+..
T Consensus 256 EEhkiFL~rvLipLhk~k~l~~yh~QLaYcivQfveK----d~kl~~~VIrglLK~WP~tnS~KEV---mFL~ElEEILe 328 (457)
T KOG2085|consen 256 EEHKLFLVRVLIPLHKPKSLSLYHKQLAYCIVQFVEK----DPKLTETVIRGLLKYWPKTNSSKEV---MFLNELEEILE 328 (457)
T ss_pred hHHHHHHHHhhhccccCCCccccccccceeeeeeecc----CccccHHHHHHHHHhcCCCCCccee---eeHhhHHHHHH
Confidence 11222233333333222110 0111111122211111 1123455666666776554433211 12344555566
Q ss_pred hhchhhccCChHHHHHHHHhccCCCChhhHHHHHHHHHHH--HHHcccCcccchhhhHHHHHhhc
Q 004960 534 SVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNI--AGVLEDGFAQYLPLVVPLAFSSC 596 (721)
Q Consensus 534 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l--~~~~~~~~~~~l~~i~~~ll~~~ 596 (721)
++.+..|.....+++..+..++++++-.|.+.|+..|.+= .....++-.-.+|.+.|.|.+..
T Consensus 329 ~iep~eFqk~~~PLf~qia~c~sS~HFQVAEraL~~wnNe~i~~Li~~n~~~ilPiiFpaLyr~s 393 (457)
T KOG2085|consen 329 VIEPSEFQKIMVPLFRQIARCVSSPHFQVAERALYLWNNEYIRSLISQNAEVILPIVFPALYRNS 393 (457)
T ss_pred hcCHHHHHHHhHHHHHHHHHHcCChhHHHHHHHHHHHhhHHHHHHHHhccceeeehhhHHHHHHH
Confidence 6667778777888999999999999999999998888743 55566777778888888887654
No 324
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=82.67 E-value=4.4 Score=31.30 Aligned_cols=60 Identities=17% Similarity=0.119 Sum_probs=45.0
Q ss_pred CCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCC--CHhHHHHHHHHHHHHHh
Q 004960 348 NASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDP--EQFVRGAASFALGQFAE 407 (721)
Q Consensus 348 ~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~--~~~vr~~a~~~l~~l~~ 407 (721)
+++|..|+.|...++.++...+......-+.++..+.+.+.|+ +...+.-|+..|..+..
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~ 78 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGP 78 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 4578999999999999888766544444568888888888866 45577888888887743
No 325
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=82.58 E-value=74 Score=34.12 Aligned_cols=201 Identities=15% Similarity=0.226 Sum_probs=105.5
Q ss_pred HhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhc-cccchHHHHHHHH-Hh-
Q 004960 392 QFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEE-ILPFLDPLMGKLL-AA- 468 (721)
Q Consensus 392 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~-~~~~~~~i~~~l~-~~- 468 (721)
..+-...+..+..++..+- .+...+..++..++..=...+..+|..|.-++.+++...... +.+.+..+.-..+ ++
T Consensus 256 te~~~~~L~~l~~l~~~~~-~f~k~lk~liK~~V~vWstge~~~rv~Afl~l~~l~~~~~~~~l~~vlk~mY~afv~nsk 334 (661)
T KOG2256|consen 256 TEVLAFTLRHLTVLVPFLA-TFPKLLKKLIKAVVHVWSTGEESLRVLAFLCLIDLCRKFKSTCLDPVLKTMYLAFVRNSK 334 (661)
T ss_pred HHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHheeeccCCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCC
Confidence 3444445555555554442 233445555555554444556678999999999888777543 3333332222222 21
Q ss_pred hcCCC-----hhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHhccCchhhhh-H-HHHHHHHHHHHH----hhc-
Q 004960 469 LENSP-----RNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRS-R-ARATELLGLVAE----SVG- 536 (721)
Q Consensus 469 l~~~~-----~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~-~-~~~~~~l~~l~~----~~~- 536 (721)
+.+.+ ..++..+.+.++.=....-...--|+.++--.|...+...+.++... - -.-+.|+-.-+. ..|
T Consensus 335 ~~~~~tl~~i~Fl~~slvEL~~ld~~~~Yq~aF~yIrQLAihLRnam~~k~K~s~~~VYnWqfi~cL~lW~rvisf~~~~ 414 (661)
T KOG2256|consen 335 FVTVNTLPLINFLQNSLVELLGLDLQVSYQHAFVYIRQLAIHLRNAMITKNKESVQSVYNWQYVHCLDLWLRVISFANGS 414 (661)
T ss_pred CCCCcccchhHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 11111 12344444433322222222223466666666777765543333221 0 112233322222 333
Q ss_pred hhhccCChHHHHHHHHhccC----CCChhhHHHHHHHHHHHHHHcccCcccchhhhHHHHHh
Q 004960 537 RARMEPILPPFVEAAISGFG----LEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFS 594 (721)
Q Consensus 537 ~~~~~~~~~~i~~~l~~~l~----~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~ 594 (721)
...+.|.+.++++.++.+++ ...-++|-.++..+..++...|. |.|.+|.++..+-.
T Consensus 415 ~s~lq~LvYpLvQvi~GvirLipT~qy~PLRlhcir~Li~Ls~ssg~-fIPi~~ll~Eml~~ 475 (661)
T KOG2256|consen 415 ASQLQPLVYPLVQVILGVIRLIPTPQYYPLRLHCIRSLISLSRSSGT-FIPLSPLLVEMLKS 475 (661)
T ss_pred HhhhhhhhhHHHHHHHHHhhhcCcccchhHHHHHHHHHHHHHhhcCc-eeecHHHHHHHHHH
Confidence 34577888888888877665 22566888899999999887776 55655555555443
No 326
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=81.53 E-value=69 Score=35.63 Aligned_cols=105 Identities=13% Similarity=0.120 Sum_probs=72.5
Q ss_pred hcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhH--HHHHhhhhHHHH
Q 004960 346 CQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQP--EIVSHYESVLPC 423 (721)
Q Consensus 346 l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~~~l~~ 423 (721)
+.........-++.++..+...|.+.+..+...++..+.+.|.+.++.++..++.++..++...++ .....++.+++.
T Consensus 65 l~~~r~~~v~Iamea~~kLL~~C~eq~n~F~ssfL~mv~~LLes~~~~~~ilg~~sf~~F~~i~~d~~sy~~~yd~Fi~k 144 (819)
T KOG1877|consen 65 LRRERFGSVKIAMEAYDKLLQACKEQINLFVSSFLRMVQKLLESNNDEMQILGTNSFVKFANIEEDGPSYHRNYDFFISK 144 (819)
T ss_pred HHhccCcchhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeehhhHHHHHHhhcccCchhhhhhHHHHHH
Confidence 444444555567888888999998888777889999999999988999999999999998854432 222234566666
Q ss_pred HHHhccCC---C--hHHHHHHHHHHHHHHHhh
Q 004960 424 ILNALEDE---S--DEVKEKSYYALAAFCEDM 450 (721)
Q Consensus 424 l~~~l~~~---~--~~v~~~a~~al~~l~~~~ 450 (721)
+.+..++. + ..+|.+...+|..++...
T Consensus 145 f~~l~he~~~~~~~~~lr~agl~gLsa~v~~t 176 (819)
T KOG1877|consen 145 FSSLCHERGDDDMKDCLRAAGLQGLSAVVWLT 176 (819)
T ss_pred HHHHhhcccchhhhhhccHhhhhhHHHHHHHH
Confidence 65554432 1 236666666776665544
No 327
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=81.53 E-value=48 Score=31.24 Aligned_cols=122 Identities=16% Similarity=0.136 Sum_probs=81.6
Q ss_pred hcCCCCHhHHHHHHHHHHHHHhhhhHH------HH---HhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhh-----
Q 004960 386 ALRDPEQFVRGAASFALGQFAEYLQPE------IV---SHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMG----- 451 (721)
Q Consensus 386 ~l~d~~~~vr~~a~~~l~~l~~~~~~~------~~---~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~----- 451 (721)
+++|+++.|.+.+..+.+.+....-.. .. ..+..+=..++..+.+.++.||..+.+.+..++....
T Consensus 1 Ll~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~ 80 (239)
T PF11935_consen 1 LLNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSD 80 (239)
T ss_dssp HCT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TT
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCC
Confidence 367889999999988888875442211 11 2334555667777888888999999999999885431
Q ss_pred -------------------------hccccchHHHHHHHHHhhcCCC--hhHHHHHHHHHHHHHHHhhhcchhhHHHHHH
Q 004960 452 -------------------------EEILPFLDPLMGKLLAALENSP--RNLQETCMSAIGSVAAAAEQAFIPYAERVLE 504 (721)
Q Consensus 452 -------------------------~~~~~~~~~i~~~l~~~l~~~~--~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~ 504 (721)
..+......+++.|+..+.++. ..+-..++.+++.|+..=+ .|++.+++
T Consensus 81 ~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP----~~~~~Il~ 156 (239)
T PF11935_consen 81 SPPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQRP----QFMSRILP 156 (239)
T ss_dssp S---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSG----GGHHHHHH
T ss_pred CccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhh----HHHHHHHH
Confidence 0111234478888888888775 5566777778777777644 36777888
Q ss_pred HHHHHHh
Q 004960 505 LLKIFMV 511 (721)
Q Consensus 505 ~l~~~l~ 511 (721)
.+.++-.
T Consensus 157 ~ll~~~~ 163 (239)
T PF11935_consen 157 ALLSFNP 163 (239)
T ss_dssp HHHHHHH
T ss_pred HHHhcCc
Confidence 7776654
No 328
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=81.04 E-value=26 Score=30.80 Aligned_cols=98 Identities=14% Similarity=0.136 Sum_probs=64.6
Q ss_pred hhHhHHHHHHHHHhhccHHHHH----------HhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHH
Q 004960 352 KYREAAVTAIGIISEGCAEWMK----------EKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVL 421 (721)
Q Consensus 352 ~~r~~al~~l~~i~~~~~~~~~----------~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l 421 (721)
..|.-++..+..+.+..+..+. -.-..+++.+.+.+..+++.+-..++..+..+...+.......++-++
T Consensus 37 ~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l 116 (168)
T PF12783_consen 37 RSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVFL 116 (168)
T ss_pred HHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555554443333 112466777777777677888889999999998887776666677777
Q ss_pred HHHHH-hccCCC--hHHHHHHHHHHHHHHHh
Q 004960 422 PCILN-ALEDES--DEVKEKSYYALAAFCED 449 (721)
Q Consensus 422 ~~l~~-~l~~~~--~~v~~~a~~al~~l~~~ 449 (721)
+.++. .+..+. ..-|..++.++..++..
T Consensus 117 ~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~ 147 (168)
T PF12783_consen 117 SHIILRILESDNSSLWQKELALEILRELCKD 147 (168)
T ss_pred HHHHHHHHccCCCcHHHHHHHHHHHHHHHhC
Confidence 77776 444333 35677788888888754
No 329
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=80.75 E-value=51 Score=32.91 Aligned_cols=150 Identities=11% Similarity=0.088 Sum_probs=89.5
Q ss_pred HHHHHhhhcCCChhhHhHHHHHHHHHhhccH----HHHHHhHHHHHHHHHhhcC----CC-C--------HhHHHHHHHH
Q 004960 339 FEFASVSCQNASPKYREAAVTAIGIISEGCA----EWMKEKLESVLHIVLGALR----DP-E--------QFVRGAASFA 401 (721)
Q Consensus 339 ~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~----~~~~~~l~~i~~~l~~~l~----d~-~--------~~vr~~a~~~ 401 (721)
+..+...+++.......+++..+.+++...+ ..+...++--.+.+-+.+. +. . +.+|......
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 6667777888777778899999999988322 2222222222222222321 11 1 3899999999
Q ss_pred HHHHHhhhhHHHHH-hh--hhHHHHHHHhccCCChHHHHHHHHHHHHHH-Hhh--h--hccccchHHHHHHHHHhhcCCC
Q 004960 402 LGQFAEYLQPEIVS-HY--ESVLPCILNALEDESDEVKEKSYYALAAFC-EDM--G--EEILPFLDPLMGKLLAALENSP 473 (721)
Q Consensus 402 l~~l~~~~~~~~~~-~~--~~~l~~l~~~l~~~~~~v~~~a~~al~~l~-~~~--~--~~~~~~~~~i~~~l~~~l~~~~ 473 (721)
+-.+....++.... .+ ..++..+++.+..++..+....+.++..-+ ... + ....-+-+..+..|..+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 88888877665554 23 466899999999877777766666666432 221 1 1122344456666666555544
Q ss_pred h----hHHHHHHHHHHHHH
Q 004960 474 R----NLQETCMSAIGSVA 488 (721)
Q Consensus 474 ~----~v~~~~l~~l~~l~ 488 (721)
. .+++.+-+.+-.++
T Consensus 218 ~~~~~~~~~~vh~fL~~lc 236 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALC 236 (330)
T ss_pred CcccchHHHHHHHHHHHHh
Confidence 4 45555544444444
No 330
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=80.43 E-value=15 Score=29.97 Aligned_cols=74 Identities=16% Similarity=0.210 Sum_probs=54.9
Q ss_pred hHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHhcc--------CchhhhhHHHHHHHHH
Q 004960 458 LDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLT--------NDEDLRSRARATELLG 529 (721)
Q Consensus 458 ~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~--------~~~~~~~~~~~~~~l~ 529 (721)
+..++..|.+-+++.++.|+-.++.+|..++..-++.|...+..=...+..+.+-. +++...+|..|-+++.
T Consensus 36 ~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~ 115 (122)
T cd03572 36 CQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIK 115 (122)
T ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHH
Confidence 56788889999999999999999999999999877888777666555555554432 1223456777777776
Q ss_pred HH
Q 004960 530 LV 531 (721)
Q Consensus 530 ~l 531 (721)
.+
T Consensus 116 ~i 117 (122)
T cd03572 116 AI 117 (122)
T ss_pred HH
Confidence 65
No 331
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=80.21 E-value=11 Score=28.55 Aligned_cols=68 Identities=13% Similarity=0.193 Sum_probs=52.8
Q ss_pred cchHHHHHHhc-cCCcHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Q 004960 117 PDLLPFLFQFS-QSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIG 185 (721)
Q Consensus 117 ~~ll~~l~~~l-~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~ 185 (721)
.+++..+...+ ++.+.+.|...+.|+.+++...++.+..-++.++.++.....+ .+..+-..|..++.
T Consensus 16 ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~-~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 16 KDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKD-NDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhC-CCccHHHHHHHHHh
Confidence 34555555553 4457799999999999999998888888889999999888887 67777777777654
No 332
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=80.11 E-value=16 Score=31.71 Aligned_cols=36 Identities=11% Similarity=0.198 Sum_probs=25.8
Q ss_pred HHHHHHHHHHH-HHhhhcchhhHHHHHHHHHHHHhcc
Q 004960 478 ETCMSAIGSVA-AAAEQAFIPYAERVLELLKIFMVLT 513 (721)
Q Consensus 478 ~~~l~~l~~l~-~~~~~~~~~~~~~i~~~l~~~l~~~ 513 (721)
..|+..+..+. ...++-+.|+++.+.|.+.+.+...
T Consensus 60 ~kA~~IF~~L~~~l~~efl~~~~~~L~~~~~~~L~~p 96 (174)
T PF04510_consen 60 VKAFHIFICLPMPLYGEFLIPFMENLLPEISKVLLPP 96 (174)
T ss_pred HHHHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCCc
Confidence 45666666666 4456677789999999888887654
No 333
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=80.01 E-value=45 Score=36.95 Aligned_cols=152 Identities=17% Similarity=0.197 Sum_probs=101.2
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHhc---CCCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhcCCCHHHHHHH
Q 004960 3 QSLELLLIQFLMPDNDARRQAEDQIKRLAK---DPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLV 79 (721)
Q Consensus 3 ~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~---~p~~~~~l~~il~~~~~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i 79 (721)
..|.+++..+-|+|..+..++.+.+.+... .|.++..|++-..+..+.. |+.+|-. ++. +.. ..+
T Consensus 4 ~~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~y~~~t~s~~----~~~il~~-~~~------P~~-K~~ 71 (668)
T PF04388_consen 4 ASITELLSLLESNDLSVLEEIKALLQELLNSDREPWLVNGLVDYYLSTNSQR----ALEILVG-VQE------PHD-KHL 71 (668)
T ss_pred ccHHHHHHHhcCCchhhHHHHHHHHHHHhhccchHHHHHHHHHHHhhcCcHH----HHHHHHh-cCC------ccH-HHH
Confidence 457889999999999999999999976553 3567888888765543332 2222221 111 111 122
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHccccCC---CCCcchHHHHHHhcc-CCcHHHHHHHHHHHHHhhhhhhhcccc
Q 004960 80 KQSLIESITLEHSAPVRRASANVVSIIAKYAVPA---GEWPDLLPFLFQFSQ-SEQEEHREVALILFSSLTETIGQTFRP 155 (721)
Q Consensus 80 ~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~---~~~~~ll~~l~~~l~-~~~~~~~~~al~~l~~i~~~~~~~~~~ 155 (721)
...+=..+. .+..|..+...++.+++...+. -.-..+++.|+.++. +.+......|+.+|..++-..+..+.+
T Consensus 72 ~~~l~~~~~---~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~ 148 (668)
T PF04388_consen 72 FDKLNDYFV---KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGP 148 (668)
T ss_pred HHHHHHHHc---CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhH
Confidence 223333332 4567888888889988865431 012457888888876 445667778999998888777888888
Q ss_pred cHHHHHHHHHHhhC
Q 004960 156 HFADMQALLLKCLQ 169 (721)
Q Consensus 156 ~~~~l~~~l~~~l~ 169 (721)
++++++.++..++.
T Consensus 149 ~L~~Lf~If~Rl~~ 162 (668)
T PF04388_consen 149 HLPDLFNIFGRLLS 162 (668)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999888774
No 334
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=79.75 E-value=85 Score=33.77 Aligned_cols=62 Identities=24% Similarity=0.222 Sum_probs=46.2
Q ss_pred HHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHH
Q 004960 379 VLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAF 446 (721)
Q Consensus 379 i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l 446 (721)
.+..+-..+.=.++.+|++.--++|-++..-|. -.++..|-+..++.+.+|..+++.+++-+
T Consensus 641 ~lR~f~h~l~yge~~iRravPLal~llsvSNPq------~~vlDtLsk~shd~D~eva~naIfamGLi 702 (878)
T KOG2005|consen 641 VLRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQ------VNVLDTLSKFSHDGDLEVAMNAIFAMGLI 702 (878)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhccCCCc------chHHHHHHHhccCcchHHHHHHHHHhccc
Confidence 344555556666889999999999988876543 15677788888888888888888887754
No 335
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=79.56 E-value=15 Score=31.72 Aligned_cols=100 Identities=15% Similarity=0.151 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHHHHHHhh-hcchhhHHHHHHHHHHHHhccCchhhhhHH-HHHHHHHHHHHhhchhhccCChHHHHHHHH
Q 004960 475 NLQETCMSAIGSVAAAAE-QAFIPYAERVLELLKIFMVLTNDEDLRSRA-RATELLGLVAESVGRARMEPILPPFVEAAI 552 (721)
Q Consensus 475 ~v~~~~l~~l~~l~~~~~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~-~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~ 552 (721)
.+-..+++++-.++-... ..|.|.+-.++..-...+...+......|. .-...+..+...+. ..|.||...+++...
T Consensus 36 ~vE~~v~~~~~~lV~KLnE~~FRPlF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LK-slf~~Y~~~ll~~~~ 114 (153)
T PF08146_consen 36 EVESSVISAFVSLVLKLNEATFRPLFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKLK-SLFTPYFSYLLDNAV 114 (153)
T ss_pred HHHHHHHHHHHHHHHHcccchhHhHHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 345567777777777665 567777777666543333222222222232 23456666666663 478889888888877
Q ss_pred hccCCC------C----hhhHHHHHHHHHHHHH
Q 004960 553 SGFGLE------F----SELREYTHGFFSNIAG 575 (721)
Q Consensus 553 ~~l~~~------~----~~~~~~~~~~l~~l~~ 575 (721)
..|+.. + ..++..++.++.....
T Consensus 115 ~~L~~~~~~~~~~~~~~~~L~~~vL~~L~~~F~ 147 (153)
T PF08146_consen 115 DLLKQFNSSKTESKSKSWELWRLVLSTLQKCFL 147 (153)
T ss_pred HHHHHhhhccccchhhHHHHHHHHHHHHHHHHh
Confidence 766532 2 4566666666555444
No 336
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=79.56 E-value=9.2 Score=30.24 Aligned_cols=61 Identities=18% Similarity=0.160 Sum_probs=52.0
Q ss_pred HHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhc-cccchHHHHHHHHHhhcCC
Q 004960 412 EIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEE-ILPFLDPLMGKLLAALENS 472 (721)
Q Consensus 412 ~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~-~~~~~~~i~~~l~~~l~~~ 472 (721)
.+.++++.++..+..++.+-.+.||..+...|.-+++.+++. +..+...+++.+..++...
T Consensus 4 ~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 4 LLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 456788888899999999999999999999999999999887 6677888888888887665
No 337
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=79.07 E-value=9.3 Score=34.77 Aligned_cols=74 Identities=19% Similarity=0.294 Sum_probs=53.6
Q ss_pred HHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhh
Q 004960 340 EFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYE 418 (721)
Q Consensus 340 ~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 418 (721)
+.+.....|++.-.|.+++.++...... ..+.+.++..+-..+.|++..||.+..|+|..++...++...+++.
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~l~ 181 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK-----ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIAFLE 181 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh-----cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 5666777887766666665554443322 2356778888888889999999999999999999887665555543
No 338
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=78.90 E-value=76 Score=31.95 Aligned_cols=103 Identities=16% Similarity=0.125 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHH-HHHhhhcchhhHHHHHHHHHHHHhcc----Cchhhh-hHHHHHHHHHHHHHhhc-hhhccCChHHHH
Q 004960 476 LQETCMSAIGSV-AAAAEQAFIPYAERVLELLKIFMVLT----NDEDLR-SRARATELLGLVAESVG-RARMEPILPPFV 548 (721)
Q Consensus 476 v~~~~l~~l~~l-~~~~~~~~~~~~~~i~~~l~~~l~~~----~~~~~~-~~~~~~~~l~~l~~~~~-~~~~~~~~~~i~ 548 (721)
.+..+++.+..- ...-|..-.|++..++.++.++++.. .+.+.. ++.-.-..+..+. .++ .......+-+++
T Consensus 204 l~~~il~~i~~~fl~~~~~~p~p~l~~vL~fl~~Ll~~~~~~~~~~~~~~~~~~lp~lL~c~~-~v~e~~~~k~~a~e~l 282 (373)
T PF14911_consen 204 LRKFILQVIRSNFLEFKGSAPPPRLASVLAFLQQLLKRLQRQNENQILTLLRLVLPSLLECLM-LVNEEPQVKKLATELL 282 (373)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHhcCcccchhHHHHHHHhhHHHHHHHh-hcCCCcchhHHHHHHH
Confidence 344555544332 22223345567888888888887662 111111 1111112222222 223 223444566777
Q ss_pred HHHHhccC-CCChhhHHHHHHHHHHHHHHccc
Q 004960 549 EAAISGFG-LEFSELREYTHGFFSNIAGVLED 579 (721)
Q Consensus 549 ~~l~~~l~-~~~~~~~~~~~~~l~~l~~~~~~ 579 (721)
+.+++.-+ ..+.+.++..-.++..+++....
T Consensus 283 ~~mv~~~~~~~~~~~~~~l~s~lrsfvqk~l~ 314 (373)
T PF14911_consen 283 QYMVESCQVGSSGEPREQLTSVLRSFVQKYLA 314 (373)
T ss_pred HHHHHcccccCcchHHHHHHHHHHHHHHHHhh
Confidence 77777655 34666777777777777665544
No 339
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=78.42 E-value=61 Score=30.56 Aligned_cols=127 Identities=17% Similarity=0.200 Sum_probs=72.3
Q ss_pred hCCCCCHHHHHHHHHHHHHhhh----hcC-ChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCc-----
Q 004960 168 LQDETSNRVRIAALKAIGSFLE----FTN-DGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESP----- 237 (721)
Q Consensus 168 l~~~~~~~vr~~a~~~l~~l~~----~~~-~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~----- 237 (721)
++| .++.|...++.|...+.. +.. ++.....|. .+..+-+.+...+.+.++.++..|++++..++-..
T Consensus 2 l~d-~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~-~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~ 79 (239)
T PF11935_consen 2 LND-EDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWE-SMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSS 79 (239)
T ss_dssp CT--SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHH-HHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---T
T ss_pred CCC-CcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHH-HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCC
Confidence 566 788888888888776533 331 211111121 22233333444567788899999999998875321
Q ss_pred --c------------------cc-----hhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHH
Q 004960 238 --A------------------PL-----LGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIP 292 (721)
Q Consensus 238 --~------------------~~-----~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~ 292 (721)
+ ++ +..--..++..++..+.....+...-..++..|..+++..|. +.+.
T Consensus 80 ~~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP~------~~~~ 153 (239)
T PF11935_consen 80 DSPPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQRPQ------FMSR 153 (239)
T ss_dssp TS---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSGG------GHHH
T ss_pred CCccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhH------HHHH
Confidence 0 01 122223466777777766655666667777788888876543 4666
Q ss_pred HHHHHHhhhc
Q 004960 293 ILQVMCPLLA 302 (721)
Q Consensus 293 il~~l~~~l~ 302 (721)
+++.+..+-.
T Consensus 154 Il~~ll~~~~ 163 (239)
T PF11935_consen 154 ILPALLSFNP 163 (239)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhcCc
Confidence 7666655433
No 340
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=77.89 E-value=59 Score=30.14 Aligned_cols=75 Identities=21% Similarity=0.177 Sum_probs=53.0
Q ss_pred CCcch-HHHHHHhccCC-cHHHHHHHHHHHHHhhhhhhhccccc--HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhh
Q 004960 115 EWPDL-LPFLFQFSQSE-QEEHREVALILFSSLTETIGQTFRPH--FADMQALLLKCLQDETSNRVRIAALKAIGSFLEF 190 (721)
Q Consensus 115 ~~~~l-l~~l~~~l~~~-~~~~~~~al~~l~~i~~~~~~~~~~~--~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~ 190 (721)
..|-+ .|++-...++. ..-.|..++-+++.+++........+ ..+++|.+.+.+.. ++...+..|...+.+++..
T Consensus 120 ~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~-GSelSKtvA~fIlqKIlld 198 (293)
T KOG3036|consen 120 HIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMES-GSELSKTVATFILQKILLD 198 (293)
T ss_pred cChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhc-ccHHHHHHHHHHHHHHhhc
Confidence 34443 44444443333 34668899999999998776544333 37889999999988 8888898888888887653
No 341
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=77.74 E-value=1.2e+02 Score=34.97 Aligned_cols=133 Identities=14% Similarity=0.147 Sum_probs=78.4
Q ss_pred cCCcHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHH
Q 004960 128 QSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSI 207 (721)
Q Consensus 128 ~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l 207 (721)
.+-.++.|..++.-+|.+++..|+.|. -...+..+--.|.| .+..||..++++|..+.+..... ..+..+...+
T Consensus 297 RDV~~~IRaiCiqeLgiWi~~yP~~Fl--~dsYLKYiGWtLsD-k~~~VRl~~lkaL~~L~e~~~~~---~~L~lFtsRF 370 (1048)
T KOG2011|consen 297 RDVDPDIRAICIQELGIWIKSYPEIFL--SDSYLKYIGWTLSD-KNGTVRLRCLKALIKLYEKDEDK---DKLELFTSRF 370 (1048)
T ss_pred ccCchHHHHHHHHHHHHHHHhccHHHh--cchHHHHhcceeec-CccHHHHHHHHHHHHHHhccccc---hHHHHHHHHH
Confidence 355788999999999999999887653 25567777778888 99999999999999998874332 2233333333
Q ss_pred HHHHHHHh-hcCCHHHHHHHHHHHHHHhcCcccch-hhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 004960 208 LNVSRQCL-ASGEEDVAVIAFEIFDELIESPAPLL-GDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIIS 274 (721)
Q Consensus 208 l~~l~~~l-~~~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~ 274 (721)
-.-+..+. .+-+..++...+...... ..+.++ ..-+..+..++++ . +..++..|.+++.
T Consensus 371 K~RIVeMadrd~~~~Vrav~L~~~~~~--~~~g~L~d~di~~Vy~Li~d----~--~r~~~~aa~~fl~ 431 (1048)
T KOG2011|consen 371 KDRIVEMADRDRNVSVRAVGLVLCLLL--SSSGLLSDKDILIVYSLIYD----S--NRRVAVAAGEFLY 431 (1048)
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHH--hcccccChhHHHHHHHHHhc----c--CcchHHHHHHHHH
Confidence 33333333 233444444433333322 222222 2333334444332 2 4556666666554
No 342
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=77.65 E-value=36 Score=27.87 Aligned_cols=74 Identities=14% Similarity=0.110 Sum_probs=50.9
Q ss_pred ccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHH---HHHHHHHhhcC--------CCCHhHHHHHHHHH
Q 004960 334 VFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLE---SVLHIVLGALR--------DPEQFVRGAASFAL 402 (721)
Q Consensus 334 ~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~---~i~~~l~~~l~--------d~~~~vr~~a~~~l 402 (721)
.+..+.+++.+.+++.+..++.-++..|..++...+..+...+. .++..+...-. +++..||..|-.++
T Consensus 35 ~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~ 114 (122)
T cd03572 35 SCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELI 114 (122)
T ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHH
Confidence 46678899999999988999999999999988765544433322 23333333322 23567999988888
Q ss_pred HHHHh
Q 004960 403 GQFAE 407 (721)
Q Consensus 403 ~~l~~ 407 (721)
..+..
T Consensus 115 ~~if~ 119 (122)
T cd03572 115 KAIFS 119 (122)
T ss_pred HHHhc
Confidence 76643
No 343
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=76.84 E-value=26 Score=30.19 Aligned_cols=78 Identities=14% Similarity=0.145 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCC----ChhhHHHHHHHHHHHHHHcccCcccchhhhHHHHHhh
Q 004960 520 SRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLE----FSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSS 595 (721)
Q Consensus 520 ~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~----~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~ 595 (721)
+-..+++++-.+...++...|.|..-++++.....+... ...=+-....++..+...++.-|.||...+++...+.
T Consensus 37 vE~~v~~~~~~lV~KLnE~~FRPlF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKslf~~Y~~~ll~~~~~~ 116 (153)
T PF08146_consen 37 VESSVISAFVSLVLKLNEATFRPLFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKLKSLFTPYFSYLLDNAVDL 116 (153)
T ss_pred HHHHHHHHHHHHHHHcccchhHhHHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678888888888888889999999999987755532 2222344667888999999999999999999998766
Q ss_pred cc
Q 004960 596 CN 597 (721)
Q Consensus 596 ~~ 597 (721)
++
T Consensus 117 L~ 118 (153)
T PF08146_consen 117 LK 118 (153)
T ss_pred HH
Confidence 64
No 344
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=75.73 E-value=61 Score=29.16 Aligned_cols=71 Identities=20% Similarity=0.248 Sum_probs=57.8
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhccc
Q 004960 81 QSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFR 154 (721)
Q Consensus 81 ~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~ 154 (721)
+.+++...+ ++..+|..+.+.++.+.+..+.+ . ...+|.++.+..|+++..+..|...+..+.+..+..+.
T Consensus 11 ~~Il~~~~~-~~~~vr~~Al~~l~~il~qGLvn-P-~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~ 81 (187)
T PF12830_consen 11 KNILELCLS-SDDSVRLAALQVLELILRQGLVN-P-KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVE 81 (187)
T ss_pred HHHHHHHhC-CCHHHHHHHHHHHHHHHhcCCCC-h-HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHH
Confidence 345665554 79999999999999999876642 2 25799999999999999999999999999988766543
No 345
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=75.57 E-value=1.5e+02 Score=33.62 Aligned_cols=208 Identities=13% Similarity=0.167 Sum_probs=95.3
Q ss_pred HhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhH--HHHHhhhhHHHHHHHhccCCC-hHHH---HHHHHHHHHHH
Q 004960 374 EKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQP--EIVSHYESVLPCILNALEDES-DEVK---EKSYYALAAFC 447 (721)
Q Consensus 374 ~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~~~l~~l~~~l~~~~-~~v~---~~a~~al~~l~ 447 (721)
.+.-.+++.++..+++++..|+....-.+..+.....- .+-+.+-.++..++..++..+ ...+ .....++.+++
T Consensus 301 ~~~T~v~~~fL~a~DS~~~iV~yeVIlsi~~~i~k~~l~~~~wD~il~i~S~~vS~~~Y~~~~~l~~iFh~~~~~ve~L~ 380 (1697)
T KOG3687|consen 301 NSPTSVFPSFLQAMDSPNEVVSYEVILSITRLIKKYELQVVAWDILLNIISRLLSQLQYLDSPELRTIFHDLLTTVEELC 380 (1697)
T ss_pred ccchhhHHHHHHHhcCccceEEEEEeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHhhhhHHHHHH
Confidence 34456788888889888888777666666665554321 111233344444444444221 1111 11222333333
Q ss_pred HhhhhccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHH---HhhhcchhhHHHHHHHHHHHHhccCchhhhhHHHH
Q 004960 448 EDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAA---AAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARA 524 (721)
Q Consensus 448 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~---~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~ 524 (721)
..- ++....+.+.+.+.++...... ..++..|..=.. +..+++...+..++ ....... ....+|.+.
T Consensus 381 ~qn--~~~g~~er~~~lier~ad~rpe---~sVlnli~Yr~~~V~A~R~gwiq~l~~lm---~r~~r~~--s~~~Vrik~ 450 (1697)
T KOG3687|consen 381 DQN--EFHGSQERYFELVERCADQRPE---SSVLNLISYRAQSVHAARDGWIQNLQALM---ERFFRSE--SRGAVRIKV 450 (1697)
T ss_pred hhh--hhcchHHHHHHHHHHhhhcCch---HHHHHHHHHhhhccCcCCchHHHHHHHHH---HHHHHhc--ccceEEEee
Confidence 221 2333344444444443332211 122222221111 11122222222222 2222211 122344455
Q ss_pred HHHHHHHHHhhchhhccCChHHHHHHHHhc-cC----CCChhhHHHHHHHHHHHHHHcccCcccchhhhHHHHHhh
Q 004960 525 TELLGLVAESVGRARMEPILPPFVEAAISG-FG----LEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSS 595 (721)
Q Consensus 525 ~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~-l~----~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~ 595 (721)
++.+..+.... .+. |=.+|+..+.-. +. +.+..+|..+..++.+++..+...--.-+-.++..+++.
T Consensus 451 ~~~l~~~~l~n-r~~---yeeEIL~~VvL~~lshi~L~~~~qvr~l~~~~l~N~a~~C~t~~~~~lldi~EA~~~r 522 (1697)
T KOG3687|consen 451 LDVLSFVLLIN-RQF---YEEEILNSVVLSQLSHIPLDKDHQVRKLATQLLVNLAEGCHTHHFNSLLDIIEAVMAR 522 (1697)
T ss_pred HHHHHHHHhhh-hhh---hHHHhhhheeeEeeccccccchhHHHHHHHHHHHHHHhhcchhcchhHHHHHHHHHhc
Confidence 66655554221 111 123444443221 11 346678899999999999888775555556677777655
No 346
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=75.36 E-value=78 Score=30.25 Aligned_cols=165 Identities=16% Similarity=0.139 Sum_probs=99.4
Q ss_pred HhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhc--------cccchHHHHHHHHHhhcCCC-----hhHHHHHH
Q 004960 415 SHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEE--------ILPFLDPLMGKLLAALENSP-----RNLQETCM 481 (721)
Q Consensus 415 ~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~--------~~~~~~~i~~~l~~~l~~~~-----~~v~~~~l 481 (721)
..++++-+.+++++.++. ....++..+..+....... +.-.+-..++.+...+.+++ ..+ ..+.
T Consensus 60 ~~f~Glq~Ll~KGL~Ss~--t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~-~~~A 136 (262)
T PF14225_consen 60 GNFEGLQPLLLKGLRSSS--TYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQEC-IEIA 136 (262)
T ss_pred CCchhHHHHHhCccCCCC--cHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHH-HHHH
Confidence 467788889999998874 3556777777777654322 22234456667777777666 223 3344
Q ss_pred HHHHHHHHHhhhcchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhc-cCChHHHHHHHHhccCCCCh
Q 004960 482 SAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARM-EPILPPFVEAAISGFGLEFS 560 (721)
Q Consensus 482 ~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~~~~~i~~~l~~~l~~~~~ 560 (721)
+.++.++...+ .+-+..++..+ ....- + ..-+++..++..+. +.| ..+--+++..++..+..+.+
T Consensus 137 ~~La~~a~~~~---~~~La~il~~y---a~~~f----r---~~~dfl~~v~~~l~-~~f~P~~~~~~l~~Ll~lL~n~~~ 202 (262)
T PF14225_consen 137 EALAQVAEAQG---LPNLARILSSY---AKGRF----R---DKDDFLSQVVSYLR-EAFFPDHEFQILTFLLGLLENGPP 202 (262)
T ss_pred HHHHHHHHhCC---CccHHHHHHHH---HhcCC----C---CHHHHHHHHHHHHH-HHhCchhHHHHHHHHHHHHhCCcH
Confidence 55555554322 22333333322 21111 1 12334444444443 344 35567788888888887788
Q ss_pred hhHHHHHHHHHHHHHHcccCcccchhhhHHHHHhhcc
Q 004960 561 ELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCN 597 (721)
Q Consensus 561 ~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~ 597 (721)
-+|...+..+..+.....-. .|.-++++..+++.++
T Consensus 203 w~~~~~L~iL~~ll~~~d~~-~~~~~dlispllrlL~ 238 (262)
T PF14225_consen 203 WLRRKTLQILKVLLPHVDMR-SPHGADLISPLLRLLQ 238 (262)
T ss_pred HHHHHHHHHHHHHhccccCC-CCcchHHHHHHHHHhC
Confidence 89999999999888766554 4567777888777664
No 347
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=75.14 E-value=54 Score=28.30 Aligned_cols=97 Identities=11% Similarity=0.046 Sum_probs=62.1
Q ss_pred HhHHHHHHHHHhhccH---HHH-HHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhh-hhHHHHHHHhc
Q 004960 354 REAAVTAIGIISEGCA---EWM-KEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY-ESVLPCILNAL 428 (721)
Q Consensus 354 r~~al~~l~~i~~~~~---~~~-~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~l~~l~~~l 428 (721)
-..++.++..+.++-. +.+ .+++.+++..+... ..++.|...|+..|..++..-+......- +--++.|+..|
T Consensus 34 La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~--~~d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hL 111 (160)
T PF11841_consen 34 LAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSS--AMDASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHL 111 (160)
T ss_pred HHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccc--cccchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHH
Confidence 3445667777776521 211 22344444444422 22677888899999988876543222222 34477888889
Q ss_pred cCCChHHHHHHHHHHHHHHHhhhh
Q 004960 429 EDESDEVKEKSYYALAAFCEDMGE 452 (721)
Q Consensus 429 ~~~~~~v~~~a~~al~~l~~~~~~ 452 (721)
+..++.++.++...+..+....++
T Consensus 112 q~~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 112 QVSNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred HcCCHHHHHHHHHHHHHHHhcCCh
Confidence 999999999999999988877644
No 348
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.10 E-value=1.9e+02 Score=34.47 Aligned_cols=251 Identities=15% Similarity=0.199 Sum_probs=125.6
Q ss_pred CCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcC---CHHHHHHHHHHHHHHhcCc-ccchhhhHHH
Q 004960 172 TSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASG---EEDVAVIAFEIFDELIESP-APLLGDSVKS 247 (721)
Q Consensus 172 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~---~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~ 247 (721)
+..++|...+.++.++++...+.. +.. .+.+++.+......+ ..++...++.++.-+.... +..-...+..
T Consensus 854 ~~~evr~~sl~~l~silet~ge~l----l~~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~ 928 (1610)
T KOG1848|consen 854 RGVEVRISSLEALVSILETVGEHL----LHG-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILD 928 (1610)
T ss_pred ccceeeHHHHHHHHHHHhccchhh----ccc-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHH
Confidence 677899999999999988654321 122 455555554333322 4456677777776665543 1111222333
Q ss_pred HHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHH
Q 004960 248 IVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMA 327 (721)
Q Consensus 248 l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~ 327 (721)
+++.+....... .+..+...|+..+-.+...-.. .+....++ .+.+......-....
T Consensus 929 lidtl~~fs~Qk-tdlNISltAi~lfWtvsDfl~~-----------------km~S~sed-----~~~~~~~e~~~ss~~ 985 (1610)
T KOG1848|consen 929 LIDTLLVFSRQK-TDLNISLTAIGLFWTVSDFLKN-----------------KMFSTSED-----SCAYNSVEDLYSSMK 985 (1610)
T ss_pred HHHHHHHHHhhh-ccccccHHHHHHHHHHHHHHHh-----------------hhhccchh-----hhhhcchhhhccccc
Confidence 333333322211 1333444444333222221111 01111000 000000000000000
Q ss_pred --HHcCccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHh-H-HHHHHHHHhhcC-------CC--CHhH
Q 004960 328 --LNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEK-L-ESVLHIVLGALR-------DP--EQFV 394 (721)
Q Consensus 328 --~~~~~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~-l-~~i~~~l~~~l~-------d~--~~~v 394 (721)
...++..+-.++..+.+...++-..+|.+|++.+=.+....+..+.+. - .-+...++++|+ ++ ...+
T Consensus 986 ~~~~l~e~lwi~ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkei 1065 (1610)
T KOG1848|consen 986 SKEILPEVLWIMLLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEI 1065 (1610)
T ss_pred chhhhhhHHHHHHHHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhH
Confidence 001112233445556666667777899999999888876544322221 1 122334445554 11 1222
Q ss_pred ----HHHHHHHHHHHHhhhhHHHH---------HhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhh
Q 004960 395 ----RGAASFALGQFAEYLQPEIV---------SHYESVLPCILNALEDESDEVKEKSYYALAAFCEDM 450 (721)
Q Consensus 395 ----r~~a~~~l~~l~~~~~~~~~---------~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~ 450 (721)
-+..+.+|+.+++.++..+. ..++.++..+.+.+.+.++++..++..++..+....
T Consensus 1066 qkqwtet~~ltisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~si 1134 (1610)
T KOG1848|consen 1066 QKQWTETSCLTISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFSI 1134 (1610)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHHH
Confidence 24577788888887765432 344566666666677888999999999998876543
No 349
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=74.08 E-value=84 Score=30.00 Aligned_cols=129 Identities=16% Similarity=0.189 Sum_probs=74.3
Q ss_pred HHHHHHHHHhhcC-CCCHhHHHHHHHHHHHHHhhhh----HHHHHhhhhHHHHHHHhccCC-Ch---HHHHHH--HHHHH
Q 004960 376 LESVLHIVLGALR-DPEQFVRGAASFALGQFAEYLQ----PEIVSHYESVLPCILNALEDE-SD---EVKEKS--YYALA 444 (721)
Q Consensus 376 l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~----~~~~~~~~~~l~~l~~~l~~~-~~---~v~~~a--~~al~ 444 (721)
+..+-..++..|. -.|.-+-..+..++..+|..+. +.+.......+..+++.+.+. .. ..|..| -.++.
T Consensus 94 i~~ig~~l~~~L~~~rHrGAfe~~~~~f~~lc~~l~~~~~~~l~~LP~~WL~~~l~~i~~~~~~~~~iTRRSAGLP~~i~ 173 (255)
T PF10350_consen 94 IEKIGELLIEQLLEIRHRGAFESVYPGFTALCRRLWSSNNPELSELPEEWLDELLEAIESKGQQKLSITRRSAGLPFLIL 173 (255)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhcCCCchHHHhHHHHHHHHHHHHhcccccccccccccCcHHHHHH
Confidence 3444444444332 2344455566666666666554 444445556667777766665 22 233322 23344
Q ss_pred HHHHhhhhccccchHHHHHHHHHhhcCCCh--------hHHHHHHHHHHHHHHH--hhhcchhhHHHHHH
Q 004960 445 AFCEDMGEEILPFLDPLMGKLLAALENSPR--------NLQETCMSAIGSVAAA--AEQAFIPYAERVLE 504 (721)
Q Consensus 445 ~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~--------~v~~~~l~~l~~l~~~--~~~~~~~~~~~i~~ 504 (721)
.++..-+..-.+.+...+..|+++...+.. ..+..+++++..|... .++...+|+...+.
T Consensus 174 aiL~ae~~~~~~ll~~~~~~Ll~ia~~~~~~~~~~~~d~~qVHAlNiLr~if~ds~L~~~~~~yi~~~l~ 243 (255)
T PF10350_consen 174 AILSAEPSNSRPLLHRTMKSLLEIAKSPSTQHEDEKSDLPQVHALNILRAIFRDSKLSEDVSPYIEDALI 243 (255)
T ss_pred HHHhcCCCcchhHHHHHHHHHHHHhcCCcccccccccchHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 555544433337788888888888777532 3677888888888754 34666677666554
No 350
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=73.30 E-value=1.7e+02 Score=33.22 Aligned_cols=50 Identities=18% Similarity=0.214 Sum_probs=35.7
Q ss_pred CCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHH
Q 004960 389 DPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEK 438 (721)
Q Consensus 389 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~ 438 (721)
+.+..||..+.+.|.++++++....-..+-++++++++.-.++.+...+.
T Consensus 484 ~~~~qvr~l~~~~l~N~a~~C~t~~~~~lldi~EA~~~rs~s~~~~l~e~ 533 (1697)
T KOG3687|consen 484 DKDHQVRKLATQLLVNLAEGCHTHHFNSLLDIIEAVMARSLSPPPELEER 533 (1697)
T ss_pred cchhHHHHHHHHHHHHHHhhcchhcchhHHHHHHHHHhcccCCCcchhhh
Confidence 56778999999999999999875444445677777777644554444433
No 351
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=72.82 E-value=1.4e+02 Score=32.00 Aligned_cols=138 Identities=16% Similarity=0.148 Sum_probs=80.8
Q ss_pred HhHHHHHHhhhcCCChhhHhHHHHHH-HHHhhccHHHHHHhHHHHHHHHHhh-----c--CCCCHhHHHHHHHHHHHHHh
Q 004960 336 PPVFEFASVSCQNASPKYREAAVTAI-GIISEGCAEWMKEKLESVLHIVLGA-----L--RDPEQFVRGAASFALGQFAE 407 (721)
Q Consensus 336 ~~i~~~l~~~l~~~~~~~r~~al~~l-~~i~~~~~~~~~~~l~~i~~~l~~~-----l--~d~~~~vr~~a~~~l~~l~~ 407 (721)
+.+.+.+..--.+.-+..|++.+.-+ ..+.+.....+....+-++..++.+ . -|++|..|..-...+..+-.
T Consensus 784 ~~l~eaVl~DY~nNvPdardaevLnl~ttiV~~v~~~i~~~~~l~l~svf~ctl~mi~kdf~EypEhr~~f~~Ll~~inl 863 (1053)
T COG5101 784 NMLCEAVLFDYKNNVPDARDAEVLNLGTTIVRNVESVIYLQRELFLISVFICTLIMIVKDFDEYPEHRKNFLLLLENINL 863 (1053)
T ss_pred HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhHHHHHhhhhhChHHHHHHHHHHHHHHH
Confidence 44444333222334466788875544 4455554433322222222211111 1 26789999998888888766
Q ss_pred hhhHHHH----HhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccc--------cchHHHHHHHHHhhcCCC
Q 004960 408 YLQPEIV----SHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEIL--------PFLDPLMGKLLAALENSP 473 (721)
Q Consensus 408 ~~~~~~~----~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~--------~~~~~i~~~l~~~l~~~~ 473 (721)
..-+.+. +.+..+...++=.+...+..|....+..+..++.++.+.=. .|+-..++.++.++.+.+
T Consensus 864 ~sF~afl~~p~p~Fklv~nti~wsfkhi~RDv~~~gLnill~l~kn~~~mg~~~~n~F~~~yy~s~l~~il~vltDsD 941 (1053)
T COG5101 864 FSFSAFLSFPQPSFKLVYNTILWSFKHINRDVSDLGLNILLILFKNCHEMGVPFINQFYAQYYMSTLENILGVLTDSD 941 (1053)
T ss_pred HhHHHHHcCCcHHHHHHHHHHHHHHHhccchHhhhhhHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHeeeeccc
Confidence 5444332 35667777777777777778888889999888888743222 344455666666666664
No 352
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.17 E-value=74 Score=33.19 Aligned_cols=100 Identities=11% Similarity=0.032 Sum_probs=72.9
Q ss_pred hhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhh--hhHHH
Q 004960 345 SCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY--ESVLP 422 (721)
Q Consensus 345 ~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~~l~ 422 (721)
.+..+||..-..-|..+..--.+ -.+.+..|.+.+++.++.|+..|+..|..+.++|+..+...+ ..++.
T Consensus 13 ~l~~pDWa~NleIcD~IN~~~~~--------~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~ 84 (470)
T KOG1087|consen 13 SLAEPDWALNLEICDLINSTEGG--------PKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLN 84 (470)
T ss_pred cccCccHHHHHHHHHHHhcCccC--------cHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 45567775544433333222222 236677888999999999999999999999999998777433 57888
Q ss_pred HHHHhccCC--ChHHHHHHHHHHHHHHHhhhh
Q 004960 423 CILNALEDE--SDEVKEKSYYALAAFCEDMGE 452 (721)
Q Consensus 423 ~l~~~l~~~--~~~v~~~a~~al~~l~~~~~~ 452 (721)
.+++..+.. +..||..++..|...-..++.
T Consensus 85 emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 85 EMVKRPKNKPRDLKVREKILELIDTWQQAFCG 116 (470)
T ss_pred HHHhccccCCcchhHHHHHHHHHHHHHHHccC
Confidence 888877754 567999999999988887754
No 353
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=70.11 E-value=12 Score=30.30 Aligned_cols=62 Identities=11% Similarity=0.046 Sum_probs=47.5
Q ss_pred HHHHccccccchHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHHhcccCCcchhHHHHH
Q 004960 655 FALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNVSLCYHFFL 717 (721)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 717 (721)
++..+.+. ......++..|.+.+.+.++.+...|...|-.+++++...+-.......|-.++
T Consensus 24 i~d~~~~~-~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l 85 (115)
T cd00197 24 ICDLINET-NVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVEL 85 (115)
T ss_pred HHHHHHCC-CccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHH
Confidence 34444333 355778899999999999999999999999999999998887666555555554
No 354
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.90 E-value=54 Score=34.17 Aligned_cols=100 Identities=10% Similarity=0.120 Sum_probs=72.6
Q ss_pred hcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccch--HHHHH
Q 004960 386 ALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFL--DPLMG 463 (721)
Q Consensus 386 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~--~~i~~ 463 (721)
.+.++++..--..|..|..=- ..-...+.+|.+.+++.++.++..|+..|..++++||..+.-.+ ..+++
T Consensus 13 ~l~~pDWa~NleIcD~IN~~~--------~~~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~ 84 (470)
T KOG1087|consen 13 SLAEPDWALNLEICDLINSTE--------GGPKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLN 84 (470)
T ss_pred cccCccHHHHHHHHHHHhcCc--------cCcHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 445666665544443332111 12347888899999998889999999999999999998765322 37777
Q ss_pred HHHHhhcCC--ChhHHHHHHHHHHHHHHHhhh
Q 004960 464 KLLAALENS--PRNLQETCMSAIGSVAAAAEQ 493 (721)
Q Consensus 464 ~l~~~l~~~--~~~v~~~~l~~l~~l~~~~~~ 493 (721)
.++...... +..||+.++..|.......++
T Consensus 85 emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 85 EMVKRPKNKPRDLKVREKILELIDTWQQAFCG 116 (470)
T ss_pred HHHhccccCCcchhHHHHHHHHHHHHHHHccC
Confidence 777777665 578999999999999888775
No 355
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=69.79 E-value=3.6 Score=23.05 Aligned_cols=14 Identities=57% Similarity=0.707 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHh
Q 004960 394 VRGAASFALGQFAE 407 (721)
Q Consensus 394 vr~~a~~~l~~l~~ 407 (721)
||..|.++||.+..
T Consensus 1 VR~~Aa~aLg~igd 14 (27)
T PF03130_consen 1 VRRAAARALGQIGD 14 (27)
T ss_dssp HHHHHHHHHGGG-S
T ss_pred CHHHHHHHHHHcCC
Confidence 78999999998876
No 356
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.00 E-value=2.5e+02 Score=33.45 Aligned_cols=153 Identities=13% Similarity=0.137 Sum_probs=89.5
Q ss_pred CCHHHHHHHHHHHHHHHcccc--CCCCCcchHHHHHHhccCC---cHHHHHHHHHHHHHhhhhhhhcc-cccHHHHHHHH
Q 004960 91 HSAPVRRASANVVSIIAKYAV--PAGEWPDLLPFLFQFSQSE---QEEHREVALILFSSLTETIGQTF-RPHFADMQALL 164 (721)
Q Consensus 91 ~~~~vr~~~~~~l~~i~~~~~--~~~~~~~ll~~l~~~l~~~---~~~~~~~al~~l~~i~~~~~~~~-~~~~~~l~~~l 164 (721)
+...+|...-.++-.|.+..+ .-..|+.+++.|......+ ..+....++.++.-|+.++-..+ ...+..+++.+
T Consensus 854 ~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lidtl 933 (1610)
T KOG1848|consen 854 RGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLIDTL 933 (1610)
T ss_pred ccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHHHH
Confidence 344555554566655554221 1135999998888776655 34556688888888887652222 23456666666
Q ss_pred HHhhCCCCCHHHHHHHHHH---HHHhhhh-cCC-hh-----------------hHHHHHhhHHHHHHHHHHHhhcCCHHH
Q 004960 165 LKCLQDETSNRVRIAALKA---IGSFLEF-TND-GA-----------------EVVKFREFIPSILNVSRQCLASGEEDV 222 (721)
Q Consensus 165 ~~~l~~~~~~~vr~~a~~~---l~~l~~~-~~~-~~-----------------~~~~~~~~l~~ll~~l~~~l~~~~~~~ 222 (721)
..+-...+|.++-..|+.. ++.++.. ... .+ .......++-.++..+.++..|+.+++
T Consensus 934 ~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~dsr~eV 1013 (1610)
T KOG1848|consen 934 LVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCEDSRAEV 1013 (1610)
T ss_pred HHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhccchHHH
Confidence 6655433566666665444 4444332 000 00 011123334445555566777788999
Q ss_pred HHHHHHHHHHHhcCcccchhh
Q 004960 223 AVIAFEIFDELIESPAPLLGD 243 (721)
Q Consensus 223 ~~~a~~~l~~l~~~~~~~~~~ 243 (721)
|..|++.+-++...++..+++
T Consensus 1014 RngAvqtlfri~~Shg~~l~~ 1034 (1610)
T KOG1848|consen 1014 RNGAVQTLFRIFNSHGSKLGT 1034 (1610)
T ss_pred hhhHHHHHHHHHhhhcccCCh
Confidence 999999999999877655544
No 357
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=68.45 E-value=2.3e+02 Score=32.84 Aligned_cols=126 Identities=13% Similarity=0.206 Sum_probs=81.2
Q ss_pred HhHHHHHHHHHhhccHHHHHHhHHHHHH-HHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCC
Q 004960 354 REAAVTAIGIISEGCAEWMKEKLESVLH-IVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDES 432 (721)
Q Consensus 354 r~~al~~l~~i~~~~~~~~~~~l~~i~~-~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~ 432 (721)
|...+...........+.+...+..++. .++....|-.|.+|..+...||..+...|..+.. ...+..+-=.|.|.+
T Consensus 262 rle~Ll~~r~etqe~~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~--dsYLKYiGWtLsDk~ 339 (1048)
T KOG2011|consen 262 RLESLLMLRKETQEQQDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLS--DSYLKYIGWTLSDKN 339 (1048)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHHhc--chHHHHhcceeecCc
Confidence 4555555555444444444555555554 4455667999999999999998888887754332 245566666688999
Q ss_pred hHHHHHHHHHHHHHHHhh--hhccccchHHHHHHHHHhh-cCCChhHHHHHH
Q 004960 433 DEVKEKSYYALAAFCEDM--GEEILPFLDPLMGKLLAAL-ENSPRNLQETCM 481 (721)
Q Consensus 433 ~~v~~~a~~al~~l~~~~--~~~~~~~~~~i~~~l~~~l-~~~~~~v~~~~l 481 (721)
..||..+..+|..+.+.- ...+..+...+=..++.+. .+.+..||...+
T Consensus 340 ~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L 391 (1048)
T KOG2011|consen 340 GTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVEMADRDRNVSVRAVGL 391 (1048)
T ss_pred cHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhhhcchhHHHHHH
Confidence 999999999999998873 1234445555555566655 333455554443
No 358
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.07 E-value=2.8e+02 Score=33.66 Aligned_cols=240 Identities=11% Similarity=0.122 Sum_probs=129.9
Q ss_pred CCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhH-HHH---HhhhhHHHH
Q 004960 348 NASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQP-EIV---SHYESVLPC 423 (721)
Q Consensus 348 ~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~~~---~~~~~~l~~ 423 (721)
+.+..+|+..+.++.. ....--..++..+-..-.+.+..+...+...++.+...... .+. ..+.+.++.
T Consensus 1048 s~s~~Irelv~rC~~~-------nikSGWk~if~i~~~aA~~~~~~iv~~~fe~v~~i~~~~f~~~~~~~~~sf~d~v~c 1120 (1514)
T KOG0929|consen 1048 SSSAEIRELVVRCISS-------NIKSGWKNIFKIFTTAASDSSKNIVELAFETVSKILQELFENVFPQEMDSFKDCVKC 1120 (1514)
T ss_pred cCcchhHHHHHhhhhh-------hhhhhhhHHHHHHHHhhccchhhHHHHhHHHHHHHHHHhhhhhchhhhHHHHHHHHH
Confidence 4456677777766661 11222334555555555677777877888877744433222 111 223444555
Q ss_pred HHHhccCC-ChHHHHHHHHHHHHHHHhhhh-----c-----------cccchHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 004960 424 ILNALEDE-SDEVKEKSYYALAAFCEDMGE-----E-----------ILPFLDPLMGKLLAALENSPRNLQETCMSAIGS 486 (721)
Q Consensus 424 l~~~l~~~-~~~v~~~a~~al~~l~~~~~~-----~-----------~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~ 486 (721)
+.+...+. .+.....+...+...+....+ . -..+.-+++-.+-.+.......+|..+++++-.
T Consensus 1121 l~~F~~~~~~~~~s~~aI~~lr~ca~k~~e~~~~~~~~~~~~~~~~~~~~~wfP~l~~ls~i~~~~~~~vr~~al~vlF~ 1200 (1514)
T KOG0929|consen 1121 LEEFTKNLGFPDDSLNAIRFLRLCALKLAEGVYNEKLKVGKDSEFDVWNSGWFPMLFQLSKIINDYRLEVRKRALEVLFD 1200 (1514)
T ss_pred HHHHHHhcCCCccchHHHHHHHHHHHHhccccchhhcccccccccccceeeeehhHhhhhHHhhccHHHHHHHHHHHHHH
Confidence 54443321 112222233223322222211 1 112223444455555556778899999999999
Q ss_pred HHHHhhhcchhh-HHHHHHHHHHHHhcc---Cc----hhhhhHHHHHHHHHHHH---HhhchhhccCChHHHHHHHHhcc
Q 004960 487 VAAAAEQAFIPY-AERVLELLKIFMVLT---ND----EDLRSRARATELLGLVA---ESVGRARMEPILPPFVEAAISGF 555 (721)
Q Consensus 487 l~~~~~~~~~~~-~~~i~~~l~~~l~~~---~~----~~~~~~~~~~~~l~~l~---~~~~~~~~~~~~~~i~~~l~~~l 555 (721)
+....|+.|.+. -..+...+..+.... .+ .+| +...+..++-.++ ...- +.....++.++..+..+.
T Consensus 1201 il~~~g~~F~~~~We~v~~~~fpIF~~~~~~~~~~~~~eW-~~tT~~~Al~~~v~lf~~~~-~~l~~lL~~~~~ll~~ci 1278 (1514)
T KOG0929|consen 1201 ILKEHGDDFSKEFWEDVFRILFPIFDNVKLDEDESEKDEW-LSTTCNHALQALVDLFTQFF-KQLNNLLPKVLGLLVGCI 1278 (1514)
T ss_pred HHHhhhhhccHHHHHHHHHheeecccccCcccchhhhhHH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence 999999888754 344444333333221 11 112 1122222222222 1211 123356677777778888
Q ss_pred CCCChhhHHHHHHHHHHHHHHcccCcccc-hhhhHHHHHhhc
Q 004960 556 GLEFSELREYTHGFFSNIAGVLEDGFAQY-LPLVVPLAFSSC 596 (721)
Q Consensus 556 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-l~~i~~~ll~~~ 596 (721)
+.++..+.....+|+..++...|..|... -+.+...+.++.
T Consensus 1279 ~~~n~~la~~g~~cl~~l~~~n~~~fse~~Wde~~~~~~e~~ 1320 (1514)
T KOG0929|consen 1279 KQDNQQLARIGTSCLLQLVSSNGEKFSEEDWDEICNCILEAF 1320 (1514)
T ss_pred cCcchhhHHhHHHHHHHHHHhcccccCHhhHHHHHHHHHHHH
Confidence 88888898899999999999999887654 344444444443
No 359
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=68.05 E-value=2.2e+02 Score=32.35 Aligned_cols=202 Identities=13% Similarity=0.042 Sum_probs=95.2
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCc-----HHHHHHHHHHHHH
Q 004960 70 KLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQ-----EEHREVALILFSS 144 (721)
Q Consensus 70 ~~~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~-----~~~~~~al~~l~~ 144 (721)
.++++..+.+.+.+-.. .-..+...+-.+-..+.....+. ....+...+.+.+.++. ...+..--..+..
T Consensus 34 ~~~~e~V~~f~~~l~~w----d~~rI~~~L~~~~~~~~~~~~~~-~~~~~~~aiyE~L~~p~lLr~~~~l~~~F~~~f~~ 108 (727)
T PF12726_consen 34 SFPEENVDQFFNMLDNW----DIQRILPGLDKAKSILESIEPMT-RSRALLLAIYECLCNPALLRDDEELRELFDAIFSS 108 (727)
T ss_pred hCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhccCCCCC-ccchHHHHHHHHHhCHHHHcCcHHHHHHHHHHHHH
Confidence 45666665554444222 12233444444433333322211 12457777777776542 2233322233333
Q ss_pred hhhhhhhcccccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhh----cCChhhHHHHHhhHHHHHHHHHHH-hhcCC
Q 004960 145 LTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEF----TNDGAEVVKFREFIPSILNVSRQC-LASGE 219 (721)
Q Consensus 145 i~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~----~~~~~~~~~~~~~l~~ll~~l~~~-l~~~~ 219 (721)
+....+-.. .+..+|.+..++-+ +++..|.=|...+.++-.. ..+..+ ..+.+.+...+... -...+
T Consensus 109 ~~~~~~~~~---~~~~lPG~~~~Lf~-~~~~~r~WA~~~~~~l~~~~~~~t~~~~~----~av~~~l~~~l~~i~~~~~~ 180 (727)
T PF12726_consen 109 LQSKKPLKL---PKELLPGMTYFLFD-GNPERRRWAERWWQRLKRPPYSITDEEFD----WAVLDELSSHLYRISPNNYN 180 (727)
T ss_pred HhccCCccc---cccccchhhhhhhc-CCHHHHHHHHHHHHHcCCCccCCchhhhh----HHHHHHHHHHHHHhccCCCC
Confidence 332222111 16777888888888 8999999898888887553 211111 12222333333222 11122
Q ss_pred HHHHHHHHHHHHHHhcCc-ccchhhhHHH-----HHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhh
Q 004960 220 EDVAVIAFEIFDELIESP-APLLGDSVKS-----IVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKK 286 (721)
Q Consensus 220 ~~~~~~a~~~l~~l~~~~-~~~~~~~~~~-----l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~ 286 (721)
+.....-...+..+.... ...+...+.. ++..++..+.... .+.-...+.++..+.+..+..++.
T Consensus 181 ~~~~~~fW~g~~~Il~~ld~~~i~~~l~~~~~~~i~~L~~~hL~~~~--~~~l~~lL~~l~~lL~k~~~~FW~ 251 (727)
T PF12726_consen 181 PDSVIRFWSGFSLILRLLDKEQITHSLRALELDPIYRLLLNHLSSNL--SPPLPILLRCLSILLEKLGSDFWD 251 (727)
T ss_pred hhHHHHHHHHHHHHHHHccHHHHHHHHhccccchHHHHHHHHhhccc--chhHHHHHHHHHHHHHhCHHHHhc
Confidence 333333223333333221 1222222222 4445555444432 344556678888888888877765
No 360
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=67.94 E-value=94 Score=28.08 Aligned_cols=75 Identities=21% Similarity=0.297 Sum_probs=57.4
Q ss_pred HHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHH
Q 004960 381 HIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDP 460 (721)
Q Consensus 381 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~ 460 (721)
+.+.....++++-+|..++.++..+... ..+.+.+++.+-..+.+++..|+.+..++|..+....++.+.+|+..
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~l~~ 182 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK-----ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIAFLEK 182 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh-----cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 6677888899999999998777665544 23567778888888888888999999999999988766555444443
No 361
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=67.07 E-value=1.2e+02 Score=31.70 Aligned_cols=130 Identities=12% Similarity=0.086 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHcC---ccc-cHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhcc---HHHHHHhHHHHHHHHHhhcCCC
Q 004960 318 AAAEVIDTMALNLA---KHV-FPPVFEFASVSCQNASPKYREAAVTAIGIISEGC---AEWMKEKLESVLHIVLGALRDP 390 (721)
Q Consensus 318 ~a~~~l~~l~~~~~---~~~-~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~---~~~~~~~l~~i~~~l~~~l~d~ 390 (721)
++..++..++.... ... -.++.+.+.+.+.+++......+...+...+-.. +..+.. ..++..+.+.+...
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~--~~iIdvl~~~v~sK 485 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLE--KSIIDVLVNLVMSK 485 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHH--hhHHHHHHHHhhcc
Confidence 44556666554332 111 1345666666677776666555555444443221 222211 35677777777777
Q ss_pred CHhHHHHHHHHHHHHHhhhhHHHH--HhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHh
Q 004960 391 EQFVRGAASFALGQFAEYLQPEIV--SHYESVLPCILNALEDESDEVKEKSYYALAAFCED 449 (721)
Q Consensus 391 ~~~vr~~a~~~l~~l~~~~~~~~~--~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~ 449 (721)
+..+|..+.|.+..+.-.+..... ..-.--+..++...+|+...|+..++..|.++.-.
T Consensus 486 DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~ 546 (743)
T COG5369 486 DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCD 546 (743)
T ss_pred hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccc
Confidence 778999999999998877654322 22244577888999999999999999999998653
No 362
>KOG1810 consensus Cell cycle-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=66.48 E-value=2.7e+02 Score=32.85 Aligned_cols=162 Identities=9% Similarity=0.028 Sum_probs=88.2
Q ss_pred hHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcC-----ccccHhHHHHHHhhhcCCChhhHhHHHHHHHHH
Q 004960 290 VIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA-----KHVFPPVFEFASVSCQNASPKYREAAVTAIGII 364 (721)
Q Consensus 290 ~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~-----~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i 364 (721)
.+..+..++.........+.+....++.-|..++..+-..-. ..+....+..-.+.+.++-|..|.+|.+++.++
T Consensus 777 l~r~~~~Ll~ia~~p~~~~~~~~~~p~VHA~NvmkaIf~~~~LS~~~sef~s~Al~lAi~~fs~~~W~~RN~atlLfaAL 856 (1417)
T KOG1810|consen 777 LPRCFCKLLKIAECPLPGEWGEGDEPRVHAMNVMKAIFTSSILSNERSEFQSRALRLAIEGFSHDMWAERNSATLLFAAL 856 (1417)
T ss_pred hHHHHHHHHHHhcCCCccccCCCcchhhhhHHHHHHHHccchhhHHHHHHHHHHHHHHHHhcCchHHhhhhhHHHHHHHH
Confidence 444444444444444333333344555556566555433211 223445555556667777899999998888887
Q ss_pred hhccHH-----------------HHHHhHHHHHHHHHhhcC--------CCCHhH-HHHHHHHHHHHHhhhhHHHHHhhh
Q 004960 365 SEGCAE-----------------WMKEKLESVLHIVLGALR--------DPEQFV-RGAASFALGQFAEYLQPEIVSHYE 418 (721)
Q Consensus 365 ~~~~~~-----------------~~~~~l~~i~~~l~~~l~--------d~~~~v-r~~a~~~l~~l~~~~~~~~~~~~~ 418 (721)
....-. .+-...+.+.|.+...|+ ++++.. -+..+-.++++-..-+..-.--+.
T Consensus 857 i~RvfGv~~s~~~~~~r~~~S~~~FFtkyp~L~~~ll~~Less~a~~sgs~q~s~aL~piLl~LSrL~~~~~~~~~~~ls 936 (1417)
T KOG1810|consen 857 INRVFGVIRSRLCLDHRNRLSGLEFFTKYPTLHPLLLTELESSDAQLSGSEQSSLALWPILLMLSRLYPSAPRSATLGLS 936 (1417)
T ss_pred HHHHHHhhhHHhhcccccccchhhhhhcCccHHHHHHHHhhhhccCCCcccCccccHHHHHHHHHhhcccCCccccCCch
Confidence 653211 111224555566665443 111111 222233333332221111011246
Q ss_pred hHHHHHHHhccCCChHHHHHHHHHHHHHHHhhh
Q 004960 419 SVLPCILNALEDESDEVKEKSYYALAAFCEDMG 451 (721)
Q Consensus 419 ~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~ 451 (721)
.++|.+.+...+.+-.+|..|..++..+++...
T Consensus 937 ~F~p~l~ect~q~~~~vRemAs~vl~~L~~~~~ 969 (1417)
T KOG1810|consen 937 VFVPFLQECTCQSNLKVREMASLVLLALVDAVL 969 (1417)
T ss_pred hhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 788889988888888899999999998887753
No 363
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=66.48 E-value=56 Score=32.46 Aligned_cols=97 Identities=12% Similarity=0.063 Sum_probs=66.6
Q ss_pred CCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccc--hHHHHHHH
Q 004960 388 RDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPF--LDPLMGKL 465 (721)
Q Consensus 388 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~--~~~i~~~l 465 (721)
..+++.+.-.+|.-++.=. ..-...+..|.+.++..++.|...|+..+..+..+|++.+..- ...+...+
T Consensus 22 T~enW~~IlDvCD~v~~~~--------~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el 93 (462)
T KOG2199|consen 22 TSENWSLILDVCDKVGSDP--------DGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTEL 93 (462)
T ss_pred ccccHHHHHHHHHhhcCCC--------cccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHH
Confidence 3456666555554443211 2345788999999999999999999999999999998766532 23566666
Q ss_pred HHhhc-CCChhHHHHHHHHHHHHHHHhh
Q 004960 466 LAALE-NSPRNLQETCMSAIGSVAAAAE 492 (721)
Q Consensus 466 ~~~l~-~~~~~v~~~~l~~l~~l~~~~~ 492 (721)
..++. ...+.|++..-..+...+..+.
T Consensus 94 ~al~~~~~h~kV~~k~~~lv~eWsee~K 121 (462)
T KOG2199|consen 94 RALIESKAHPKVCEKMRDLVKEWSEEFK 121 (462)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHHhc
Confidence 66666 4567777766666665655444
No 364
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=65.35 E-value=2.6e+02 Score=32.29 Aligned_cols=222 Identities=14% Similarity=0.150 Sum_probs=112.0
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHhcCCC---------cHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhh---------
Q 004960 7 LLLIQFLMPDNDARRQAEDQIKRLAKDPQ---------VVPALVQHLRTAKTPNVRQLAAVLLRKKITGHW--------- 68 (721)
Q Consensus 7 ~ll~~~~s~d~~~r~~A~~~L~~~~~~p~---------~~~~l~~il~~~~~~~vr~~a~~~l~~~i~~~w--------- 68 (721)
..|-+++.+-+.-|..+...|..+..+|+ .+.+++.++++.+.++.|-.|+.+|.+.....-
T Consensus 1816 ~~LL~lLHS~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL 1895 (2235)
T KOG1789|consen 1816 TTLLTLLHSQPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITL 1895 (2235)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeeh
Confidence 33444555666778888888877776653 456788888998899999999999988865421
Q ss_pred -cCCCHHHHHHHHH---HHHHHHhh--cC-----CHHHHHHHHHHHHHHHcc------ccCCCCCcchHHHHHHhccCCc
Q 004960 69 -AKLSPQLKQLVKQ---SLIESITL--EH-----SAPVRRASANVVSIIAKY------AVPAGEWPDLLPFLFQFSQSEQ 131 (721)
Q Consensus 69 -~~~~~~~~~~i~~---~ll~~l~~--e~-----~~~vr~~~~~~l~~i~~~------~~~~~~~~~ll~~l~~~l~~~~ 131 (721)
+-+|+...+.++. ...+.+.+ |. ++..|......++.++.. ..|...|..-=+.- ..+..+
T Consensus 1896 ~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsA--g~~Ea~ 1973 (2235)
T KOG1789|consen 1896 IKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSA--GTSEAD 1973 (2235)
T ss_pred HHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhc--chhhhc
Confidence 1134444444432 22233321 21 344555555555555432 22333453211111 011111
Q ss_pred HHHHHHHHHHHHHhhhhhhhcc---cccHHHHHHHHHHhhCCCCCH--HHHHHHHHHHHHhhhhcCChhhHHHHHhhHHH
Q 004960 132 EEHREVALILFSSLTETIGQTF---RPHFADMQALLLKCLQDETSN--RVRIAALKAIGSFLEFTNDGAEVVKFREFIPS 206 (721)
Q Consensus 132 ~~~~~~al~~l~~i~~~~~~~~---~~~~~~l~~~l~~~l~~~~~~--~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ 206 (721)
.+.. .+-..+..++...+-.+ ..++..++..+..++.. +++ +.-..-..++..+.+..+.-.+...--.++|.
T Consensus 1974 ~E~a-VGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~-~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK 2051 (2235)
T KOG1789|consen 1974 KECA-VGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSR-PTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPK 2051 (2235)
T ss_pred cCcc-cchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcC-CCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHH
Confidence 1111 11122233332211111 23456777777777764 332 22222233444444444332221112357888
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHhcC
Q 004960 207 ILNVSRQCLASGEEDVAVIAFEIFDELIES 236 (721)
Q Consensus 207 ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~ 236 (721)
++..+ ...+...-..|++.+-++.+.
T Consensus 2052 ~~~Am----~~~n~s~P~SaiRVlH~Lsen 2077 (2235)
T KOG1789|consen 2052 FCTAM----CLQNTSAPRSAIRVLHELSEN 2077 (2235)
T ss_pred HHHHH----HhcCCcCcHHHHHHHHHHhhc
Confidence 88743 323344447788888887764
No 365
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=64.57 E-value=11 Score=21.63 Aligned_cols=15 Identities=53% Similarity=0.826 Sum_probs=12.5
Q ss_pred HhHHHHHHHHHHHHH
Q 004960 392 QFVRGAASFALGQFA 406 (721)
Q Consensus 392 ~~vr~~a~~~l~~l~ 406 (721)
+.||..|+++||++.
T Consensus 1 ~~vR~~aa~aLg~~~ 15 (30)
T smart00567 1 PLVRHEAAFALGQLG 15 (30)
T ss_pred CHHHHHHHHHHHHcC
Confidence 368999999999874
No 366
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=64.52 E-value=59 Score=29.86 Aligned_cols=74 Identities=16% Similarity=0.147 Sum_probs=49.9
Q ss_pred HHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhh
Q 004960 338 VFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY 417 (721)
Q Consensus 338 i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 417 (721)
..+.+.+...+++.-.|.+|+.+.-..... ...+.+...+...+.|++..|+.+.-|+|..++..-++.+..++
T Consensus 116 ~~~~l~~W~~s~~~W~rR~ai~~~l~~~~~------~~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~~~V~~fl 189 (208)
T cd07064 116 FEPVMDEWSTDENFWLRRTAILHQLKYKEK------TDTDLLFEIILANLGSKEFFIRKAIGWALREYSKTNPDWVRDFV 189 (208)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHc------cCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 356666777787766666665432222221 12345666777888999999999999999999988766554443
No 367
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=64.15 E-value=1.8e+02 Score=29.86 Aligned_cols=137 Identities=17% Similarity=0.154 Sum_probs=76.6
Q ss_pred HHHHHHHhcCCChHH--HHHHHHHHHHHhc--CCCc-----HHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhcCCCHHH
Q 004960 5 LELLLIQFLMPDNDA--RRQAEDQIKRLAK--DPQV-----VPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQL 75 (721)
Q Consensus 5 l~~ll~~~~s~d~~~--r~~A~~~L~~~~~--~p~~-----~~~l~~il~~~~~~~vr~~a~~~l~~~i~~~w~~~~~~~ 75 (721)
+-.++..+++|+.+. |-+|..-|++... +-+. ...++.+.....+++.....+-+|.+.++.. ++.
T Consensus 182 lD~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~lAK~~e~~e~aR~~~~il~~mFKHS-----eet 256 (832)
T KOG3678|consen 182 LDLLLRMFQAPNLETSVRVEAARLLEQILVAENRDRVARIGLGVILNLAKEREPVELARSVAGILEHMFKHS-----EET 256 (832)
T ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhhHHhhccchhhhhhhhhcCcHHHHHHHHHHHHHHhhhh-----HHH
Confidence 445677788897765 9999988887653 2121 2334444433456666666666677776542 111
Q ss_pred HHH-H----HHHHHHHHhhcCCHHHHHHHHHHHHHHHccccCCCC----CcchHHHHHHhccCCcHHHHHHHHHHHHHhh
Q 004960 76 KQL-V----KQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGE----WPDLLPFLFQFSQSEQEEHREVALILFSSLT 146 (721)
Q Consensus 76 ~~~-i----~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~----~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~ 146 (721)
-.. + ...++-.... .++.+.++++-+++.++-+..-..+ -...-..|+-+..+.+.-.|..|+.+...++
T Consensus 257 ~~~Lvaa~~lD~vl~~~rR-t~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vla 335 (832)
T KOG3678|consen 257 CQRLVAAGGLDAVLYWCRR-TDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLA 335 (832)
T ss_pred HHHHHhhcccchheeeccc-CCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhh
Confidence 111 1 1122333333 5788888999999988754321100 0111222334445566677777777776666
Q ss_pred h
Q 004960 147 E 147 (721)
Q Consensus 147 ~ 147 (721)
.
T Consensus 336 t 336 (832)
T KOG3678|consen 336 T 336 (832)
T ss_pred h
Confidence 4
No 368
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=64.07 E-value=2.8e+02 Score=32.12 Aligned_cols=136 Identities=13% Similarity=0.058 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHhhhhhhcC---C-CHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcc-ccCCC-CCcchHHHHHH
Q 004960 52 VRQLAAVLLRKKITGHWAK---L-SPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKY-AVPAG-EWPDLLPFLFQ 125 (721)
Q Consensus 52 vr~~a~~~l~~~i~~~w~~---~-~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~-~~~~~-~~~~ll~~l~~ 125 (721)
--+++...|+|.+.++-+- + +++......+.++..+..-.++++...+.+.+..+..+ +...+ .-...+..|.+
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~ 1820 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLT 1820 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHH
Confidence 3457788888888765321 1 22223333445666666557788888877777766432 11110 11235677778
Q ss_pred hccCCcHHHHHHHHHHHHHhhhhhhhcccccH-HHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhh
Q 004960 126 FSQSEQEEHREVALILFSSLTETIGQTFRPHF-ADMQALLLKCLQDETSNRVRIAALKAIGSFLE 189 (721)
Q Consensus 126 ~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~ 189 (721)
++.| -+..|+.++.++..+..... ...... ..-+..+...+...+++++|.++...++++..
T Consensus 1821 lLHS-~PS~R~~vL~vLYAL~S~~~-i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~A 1883 (2235)
T KOG1789|consen 1821 LLHS-QPSMRARVLDVLYALSSNGQ-IGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQA 1883 (2235)
T ss_pred HHhc-ChHHHHHHHHHHHHHhcCcH-HHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhh
Confidence 8876 46889999999998875421 000000 11111222233333688999999999998854
No 369
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=63.27 E-value=44 Score=27.41 Aligned_cols=73 Identities=18% Similarity=0.276 Sum_probs=51.6
Q ss_pred hHHHHHHHHHhhcC-CCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhh
Q 004960 375 KLESVLHIVLGALR-DPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDM 450 (721)
Q Consensus 375 ~l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~ 450 (721)
++..++|.+.+.+. ...+..|.++...++.++...+= -.+.+..++..+.+....... ...+..++..+++.-
T Consensus 3 ~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L-~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 3 ILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPL-SDEVLNALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCC-cHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 56788999999999 77899999999999999887541 123455666666655554433 456777777776544
No 370
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=62.92 E-value=1.2e+02 Score=27.53 Aligned_cols=134 Identities=10% Similarity=0.129 Sum_probs=67.3
Q ss_pred hhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCH--hHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhcc
Q 004960 352 KYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQ--FVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALE 429 (721)
Q Consensus 352 ~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~--~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~ 429 (721)
+.|..|..++..+...... ..++++ -.+.+...+..++. ..-..+.++...+..-+. +..|...++..++-...
T Consensus 22 rvR~~A~~~l~~ll~~~~~-~~~~ip-~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL~--~~~y~~~ll~Glv~S~G 97 (193)
T PF12612_consen 22 RVREVAGKCLQRLLHSQDP-TIPHIP-HREELQDIFPSESEASLNWSSSSEYFPRLVKLLD--LPEYRYSLLSGLVVSAG 97 (193)
T ss_pred HHHHHHHHHHHHHhcCCCc-cccCCC-cHHHHHHHcccccccccccCCHHHHHHHHHHHhc--cHHHHHHHHhHHHhcCC
Confidence 5888888888888833211 111111 11223333322211 011122233333332221 12456677777777777
Q ss_pred CCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCC--hhHHHHHHHHHHHHHHH
Q 004960 430 DESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSP--RNLQETCMSAIGSVAAA 490 (721)
Q Consensus 430 ~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~--~~v~~~~l~~l~~l~~~ 490 (721)
.....+...+..+|..++... ..-...+..++..+..++.++. ..+-..++.++..+...
T Consensus 98 ~~tesl~~~s~~AL~~~~~~~-~~~~~~~~~v~~~l~~il~~~~~~dRv~vP~l~tl~~Ll~~ 159 (193)
T PF12612_consen 98 GLTESLVRASSAALLSYLREL-SDSPEELEQVLSDLLSILKENLRNDRVVVPLLKTLDFLLSS 159 (193)
T ss_pred CCchhHHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHHhCCCCCeeecHHHHHHHHHhC
Confidence 777777788888888888654 1122334555566666655542 22333555555555443
No 371
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=62.72 E-value=25 Score=25.65 Aligned_cols=54 Identities=17% Similarity=0.286 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhhhhHHHHHhhh--hHHHHHHHhcc-CCChHHHHHHHHHHHHHHHhh
Q 004960 395 RGAASFALGQFAEYLQPEIVSHYE--SVLPCILNALE-DESDEVKEKSYYALAAFCEDM 450 (721)
Q Consensus 395 r~~a~~~l~~l~~~~~~~~~~~~~--~~l~~l~~~l~-~~~~~v~~~a~~al~~l~~~~ 450 (721)
.++|+|++|.++.. +.-.++++ ++++.+++... ++...+|-.+..+|+-+....
T Consensus 4 lKaaLWaighIgss--~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~ 60 (73)
T PF14668_consen 4 LKAALWAIGHIGSS--PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTE 60 (73)
T ss_pred HHHHHHHHHhHhcC--hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCH
Confidence 46899999999875 22234443 68888888776 445679999999998776543
No 372
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=61.99 E-value=1.1e+02 Score=34.28 Aligned_cols=156 Identities=12% Similarity=0.063 Sum_probs=90.0
Q ss_pred hHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhcc
Q 004960 375 KLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEI 454 (721)
Q Consensus 375 ~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~ 454 (721)
....++..+++...++.|.=+... =|..++-.-+..+.+.-.-+.....+-+......-..-+..+...++..+++++
T Consensus 14 RyKkLV~~iFPr~~e~gpn~s~m~--kL~~YAasnp~KL~KI~~yL~~R~~kdl~~~r~~~v~Iamea~~kLL~~C~eq~ 91 (819)
T KOG1877|consen 14 RYKKLVDNIFPRSPEDGPNKSKME--KLTFYAASNPSKLPKIGTYLEERCYKDLRRERFGSVKIAMEAYDKLLQACKEQI 91 (819)
T ss_pred HHHHHHHHhCCCCCCCCcccccHH--HHHHHHhhChhhhhHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHhhhh
Confidence 334555555554444444333221 122222222222222222333344444444333333457888999999999999
Q ss_pred ccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhc--chhhHHHHHHHHHHHHhccCchh--hhhHHHHHHHHHH
Q 004960 455 LPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQA--FIPYAERVLELLKIFMVLTNDED--LRSRARATELLGL 530 (721)
Q Consensus 455 ~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~~--~~~~~~~i~~~l~~~l~~~~~~~--~~~~~~~~~~l~~ 530 (721)
..|...++..+..++.+++.+++..+..++...+...++. +.--++.+++.+.++.....+++ ..+|...+.+++.
T Consensus 92 n~F~ssfL~mv~~LLes~~~~~~ilg~~sf~~F~~i~~d~~sy~~~yd~Fi~kf~~l~he~~~~~~~~~lr~agl~gLsa 171 (819)
T KOG1877|consen 92 NLFVSSFLRMVQKLLESNNDEMQILGTNSFVKFANIEEDGPSYHRNYDFFISKFSSLCHERGDDDMKDCLRAAGLQGLSA 171 (819)
T ss_pred HHHHHHHHHHHHHHHhcCCCceeeehhhHHHHHHhhcccCchhhhhhHHHHHHHHHHhhcccchhhhhhccHhhhhhHHH
Confidence 8889999999999999988888888888887777655432 22236677777776665433332 2345555555555
Q ss_pred HH
Q 004960 531 VA 532 (721)
Q Consensus 531 l~ 532 (721)
+.
T Consensus 172 ~v 173 (819)
T KOG1877|consen 172 VV 173 (819)
T ss_pred HH
Confidence 44
No 373
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=61.54 E-value=48 Score=27.18 Aligned_cols=73 Identities=15% Similarity=0.244 Sum_probs=50.2
Q ss_pred ccHhHHHHHHhhhc-CCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhh
Q 004960 334 VFPPVFEFASVSCQ-NASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYL 409 (721)
Q Consensus 334 ~~~~i~~~l~~~l~-~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 409 (721)
+++.++|.+...+. +...+.|.++++.++.++...+=. .+.+..++..+......... ...++.++..++...
T Consensus 3 ~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~-~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 3 ILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLS-DEVLNALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCc-HHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 56788999999998 778889999999999998764310 12234555555555544443 467778888777553
No 374
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=61.23 E-value=1.2e+02 Score=26.81 Aligned_cols=67 Identities=21% Similarity=0.166 Sum_probs=35.6
Q ss_pred CChHHHHHHHHHHHHHhcCCCcHHHHHHHHhcC-CChhHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHHHHHHhhcC
Q 004960 15 PDNDARRQAEDQIKRLAKDPQVVPALVQHLRTA-KTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEH 91 (721)
Q Consensus 15 ~d~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~-~~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i~~~ll~~l~~e~ 91 (721)
.|.+..++|.+.|.+.. |--....++++... .++.||.+|+..|++ .+++........|+|+|.-|+
T Consensus 51 ~~~~~v~e~~~lL~~W~--~i~~~~aLeLL~~~f~d~~VR~yAV~~L~~--------~sd~eL~~yL~QLVQaLKyE~ 118 (171)
T cd00872 51 NKRDDVAQMYQLLKRWP--KLKPEQALELLDCNFPDEHVREFAVRCLEK--------LSDDELLQYLLQLVQVLKYEP 118 (171)
T ss_pred CCHHHHHHHHHHHHCCC--CCCHHHHHHHCCCcCCCHHHHHHHHHHHHh--------CCHHHHHHHHHHHHHHHHccc
Confidence 34455555555444432 11233344555442 457777777766554 255555555566677776553
No 375
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.35 E-value=2.4e+02 Score=29.86 Aligned_cols=232 Identities=16% Similarity=0.114 Sum_probs=133.1
Q ss_pred hcCCChhhHhHHHHHHHHHhhccHHHHHH---hHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhh--------HHHH
Q 004960 346 CQNASPKYREAAVTAIGIISEGCAEWMKE---KLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQ--------PEIV 414 (721)
Q Consensus 346 l~~~~~~~r~~al~~l~~i~~~~~~~~~~---~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--------~~~~ 414 (721)
....+...+++....|..+.+.....+.. ..-.++..++-.-.+++..|...++..--.+.+... .-++
T Consensus 256 ~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~~h~~~evie~SF~fW~~lse~l~~~~~~~~~~~fr 335 (559)
T KOG2081|consen 256 MAGEDLDKNEAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVAGHNDTEVIEASFNFWYSLSEELTLTDDDEALGIFR 335 (559)
T ss_pred hcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhccCCchhhhhhhHHhhhhhHHHHhccccHHHHHHhH
Confidence 34567778888888888887764432222 123444455555566777777777666656554332 1245
Q ss_pred HhhhhHHHHHHHhccCCC------------hHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcC--CChhHHHHH
Q 004960 415 SHYESVLPCILNALEDES------------DEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALEN--SPRNLQETC 480 (721)
Q Consensus 415 ~~~~~~l~~l~~~l~~~~------------~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~--~~~~v~~~~ 480 (721)
+|+..++..+....+-+. .+-|......+...+.-.|. +..++.+...+.+ ++++..+++
T Consensus 336 py~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs------~e~lk~~~~~l~e~~~~We~~EAa 409 (559)
T KOG2081|consen 336 PYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFIIGS------DECLKQMYIRLKENNASWEEVEAA 409 (559)
T ss_pred HHHHHHHHHHHHHccCCCccccCccchhHHHHHHHHHHHHHHHHHHHhCc------HHHHHHHHHHHccCCCchHHHHHH
Confidence 788888888888776443 12455555666555544443 1233333333333 467888999
Q ss_pred HHHHHHHHHHhhhcchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCCh
Q 004960 481 MSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFS 560 (721)
Q Consensus 481 l~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~ 560 (721)
+-.+..++......-.+.++.++..+. ... ....+|..++..+|.+..-+.. -...++.+.+.+...++...
T Consensus 410 LF~l~~~~~~~~~~e~~i~pevl~~i~----nlp-~Q~~~~~ts~ll~g~~~ew~~~--~p~~le~v~~~~~~~~~~~~- 481 (559)
T KOG2081|consen 410 LFILRAVAKNVSPEENTIMPEVLKLIC----NLP-EQAPLRYTSILLLGEYSEWVEQ--HPELLEPVLRYIRQGLQLKR- 481 (559)
T ss_pred HHHHHHHhccCCccccchHHHHHHHHh----CCc-cchhHHHHHHHHHHHHHHHHHh--CcHHHHHHHHHHHHHhhhcc-
Confidence 998888887765444444555544433 221 1223677778888888765532 11234455555555555322
Q ss_pred hhHHHHHHHHHHHHHHcccCcccchhhhHHHH
Q 004960 561 ELREYTHGFFSNIAGVLEDGFAQYLPLVVPLA 592 (721)
Q Consensus 561 ~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l 592 (721)
....+..++..++........+.++.+...+
T Consensus 482 -~as~~a~~~~~i~~~c~~~~~~l~~~~~~l~ 512 (559)
T KOG2081|consen 482 -LASAAALAFHRICSACRVQMTCLIPSLLELI 512 (559)
T ss_pred -hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 5555666677777666655544444444443
No 376
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=59.18 E-value=1.7e+02 Score=27.97 Aligned_cols=59 Identities=12% Similarity=0.222 Sum_probs=42.1
Q ss_pred HhhhhHHHHHHHhccCCCh--------HHHHHHHHHHHHHHHhh--hhccccchHHHHHHHHHhhcCCC
Q 004960 415 SHYESVLPCILNALEDESD--------EVKEKSYYALAAFCEDM--GEEILPFLDPLMGKLLAALENSP 473 (721)
Q Consensus 415 ~~~~~~l~~l~~~l~~~~~--------~v~~~a~~al~~l~~~~--~~~~~~~~~~i~~~l~~~l~~~~ 473 (721)
+.++..+..|++....+.. .-|.+|+..|..++... +..+.+|+.+.+..-++.+.++.
T Consensus 185 ~ll~~~~~~Ll~ia~~~~~~~~~~~~d~~qVHAlNiLr~if~ds~L~~~~~~yi~~~l~lai~~f~s~~ 253 (255)
T PF10350_consen 185 PLLHRTMKSLLEIAKSPSTQHEDEKSDLPQVHALNILRAIFRDSKLSEDVSPYIEDALILAIKGFSSPD 253 (255)
T ss_pred hHHHHHHHHHHHHhcCCcccccccccchHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 4566777777776665432 47888999999888765 56778888888877666666553
No 377
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=57.97 E-value=1.3e+02 Score=26.14 Aligned_cols=101 Identities=13% Similarity=0.125 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCC-CHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHH
Q 004960 133 EHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDET-SNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVS 211 (721)
Q Consensus 133 ~~~~~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~l~~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l 211 (721)
+....++.++..+++..--.-....+.++..+....+... +..+...|+..|-+++...+.......-.--++.++.
T Consensus 32 ~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~-- 109 (160)
T PF11841_consen 32 EILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIR-- 109 (160)
T ss_pred HHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHH--
Confidence 4444567777777664211111223444555555554323 6778888888888887754322111111223555555
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHhcCc
Q 004960 212 RQCLASGEEDVAVIAFEIFDELIESP 237 (721)
Q Consensus 212 ~~~l~~~~~~~~~~a~~~l~~l~~~~ 237 (721)
.++..+++++..++..+..+....
T Consensus 110 --hLq~~~~~iq~naiaLinAL~~kA 133 (160)
T PF11841_consen 110 --HLQVSNQEIQTNAIALINALFLKA 133 (160)
T ss_pred --HHHcCCHHHHHHHHHHHHHHHhcC
Confidence 456678899999988887766543
No 378
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=57.77 E-value=1.2e+02 Score=26.04 Aligned_cols=75 Identities=21% Similarity=0.209 Sum_probs=39.4
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHhcCCCcHHHHHHHHhcC-CChhHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHHHH
Q 004960 7 LLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTA-KTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIE 85 (721)
Q Consensus 7 ~ll~~~~s~d~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~-~~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i~~~ll~ 85 (721)
.+++..--.|.+..+++.+.|... .|--....+..+... .++.+|++|+..|++ .+++........|+|
T Consensus 43 ~~L~sv~w~~~~~~~e~~~lL~~W--~~~~~~~aL~LL~~~~~~~~vr~yAv~~L~~--------~~~~~l~~ylpQLVQ 112 (152)
T cd00864 43 KLLKSVNWNDDEEVSELYQLLKWW--APLSPEDALELLSPKYPDPVVRQYAVRVLES--------ASDDELLLYLPQLVQ 112 (152)
T ss_pred HHHHHccCCCHHHHHHHHHHHhcC--CCCCHHHHHHHcCCcCCCHHHHHHHHHHHHh--------CCHHHHHHHHHHHHH
Confidence 344444334555555555544443 222233444555432 457777777766544 355555666666777
Q ss_pred HHhhcC
Q 004960 86 SITLEH 91 (721)
Q Consensus 86 ~l~~e~ 91 (721)
+|.-|+
T Consensus 113 aLkye~ 118 (152)
T cd00864 113 ALKYEP 118 (152)
T ss_pred HHhccc
Confidence 776543
No 379
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=57.64 E-value=4.3e+02 Score=32.16 Aligned_cols=71 Identities=14% Similarity=0.161 Sum_probs=50.7
Q ss_pred hhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccch--HHHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q 004960 418 ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFL--DPLMGKLLAALENSPRNLQETCMSAIGSVAA 489 (721)
Q Consensus 418 ~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~ 489 (721)
..++..|++.|++.+-.|..++|.+|-+|.-..... +.++ ...+..|.+++.+.+..+.+....++.++..
T Consensus 529 ~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~D-Qq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln 601 (2195)
T KOG2122|consen 529 HNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPED-QQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLN 601 (2195)
T ss_pred hhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHH-HHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhc
Confidence 477888999999988888899999999997666432 2222 2455667777777777766666666666543
No 380
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=57.19 E-value=2.8e+02 Score=29.96 Aligned_cols=260 Identities=13% Similarity=0.105 Sum_probs=123.6
Q ss_pred cHHHHHHHHHHHHHHHcCccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHH-HHhHHHHHHHHHhhcCCCCH
Q 004960 314 APDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWM-KEKLESVLHIVLGALRDPEQ 392 (721)
Q Consensus 314 ~~~~~a~~~l~~l~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~-~~~l~~i~~~l~~~l~d~~~ 392 (721)
..+......+..+....+...++.+=..+.+.+-+++.-...-+.....-+++.....+ ..++..+.. +++.+-.+.
T Consensus 243 ~lY~~vl~~Lctfi~~~~~s~f~eLE~~LL~~vL~~~~l~~lLa~DvWCFlaRygtaeLc~~hv~~L~~-Lik~lp~~~- 320 (559)
T PF14868_consen 243 SLYQHVLVHLCTFIASLSPSAFPELERFLLENVLHPHFLCSLLAMDVWCFLARYGTAELCAHHVNLLAH-LIKSLPSSS- 320 (559)
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH-HHHHcCCcc-
Confidence 44555556666666666766777777777777777887777777777666666554333 334444443 333333222
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHH-hhhhHH-------HHHHHhcc--CCChHHHHHHHHHHHHH----HHhhhh---ccc
Q 004960 393 FVRGAASFALGQFAEYLQPEIVS-HYESVL-------PCILNALE--DESDEVKEKSYYALAAF----CEDMGE---EIL 455 (721)
Q Consensus 393 ~vr~~a~~~l~~l~~~~~~~~~~-~~~~~l-------~~l~~~l~--~~~~~v~~~a~~al~~l----~~~~~~---~~~ 455 (721)
.....-...|+++...+.++.+. +++..- ..+.+.+. .-.+..|..+..-+... ++.... .-.
T Consensus 321 ~~~~~L~~LL~Rl~~~m~~~~q~~~v~~f~p~~~~~n~~lw~~~~~~~L~~~lr~~~~~~i~~~~~~~~~~~~~~~~~s~ 400 (559)
T PF14868_consen 321 YQLINLSILLRRLFFLMAPDHQSEFVQDFSPSAETENLLLWEGFPLNALSDELRKQIVQEIFTLCFAFCQKWLSPSSCSL 400 (559)
T ss_pred hhHhhHHHHHHHHHHhcCHHHHHHHHHhcCccccccchHHHHhccHHhCCHHHHHHHHHHHHHHHHHHHHHhcccCCcCc
Confidence 22223455577776666544321 111111 11222221 11223333333322222 221111 000
Q ss_pred cchH---HHHHHHHHhhcCC----ChhHHHHHHHHHHHHHHHh---hhcchhhHHHHHH---------------------
Q 004960 456 PFLD---PLMGKLLAALENS----PRNLQETCMSAIGSVAAAA---EQAFIPYAERVLE--------------------- 504 (721)
Q Consensus 456 ~~~~---~i~~~l~~~l~~~----~~~v~~~~l~~l~~l~~~~---~~~~~~~~~~i~~--------------------- 504 (721)
..++ ..+..++...+.. +..-+..+++.++.+-... ...-.+|++..+.
T Consensus 401 g~l~~~~~~LsalL~~c~~~~~~~d~~~~~~i~~ii~~lw~~~~~~~v~~~~~l~~~~~~lL~l~~~~~~~l~~~~i~qv 480 (559)
T PF14868_consen 401 GELGQLNFALSALLQVCNSSGSTIDMKDQTFIVEIISQLWSFLSSKQVSSQPYLQQTLSLLLSLLSFFIQLLDPQLIEQV 480 (559)
T ss_pred chHhHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHhchhhhccchHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 1112 2222222222221 2333444555555444432 1111234333222
Q ss_pred --HHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhcc-CChHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHc
Q 004960 505 --LLKIFMVLTNDEDLRSRARATELLGLVAESVGRARME-PILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVL 577 (721)
Q Consensus 505 --~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~ 577 (721)
.+.+.+... .++ .+|-...++++.+++...++... +..+.+.......+.+.++-++.-++.+++.+++..
T Consensus 481 ~~~l~~l~~~~-pp~-~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~FAe~T 554 (559)
T PF14868_consen 481 LTELTSLFKSE-PPD-HVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQFAERT 554 (559)
T ss_pred HHHHHHHHhhC-CCc-cchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccC
Confidence 222222221 121 25556667777777544343333 334455555455677889999999999999998643
No 381
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=57.03 E-value=2.2e+02 Score=28.65 Aligned_cols=55 Identities=15% Similarity=0.227 Sum_probs=34.3
Q ss_pred CHHHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 004960 219 EEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKY 279 (721)
Q Consensus 219 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~ 279 (721)
.......|.+.+.++.++.|.+.... +..-++++.+. +-.+|++|+.=+..+|..
T Consensus 37 ~~k~k~lasq~ip~~fk~fp~la~~a----~da~~d~~ed~--d~~ir~qaik~lp~fc~~ 91 (460)
T KOG2213|consen 37 TSKEKRLASQFIPRFFKHFPSLADEA----IDAQLDLCEDD--DVGIRRQAIKGLPLFCKG 91 (460)
T ss_pred chHHHHHHHHHHHHHHhhCchhhhHH----HHhhhcccccc--chhhHHHHHhccchhccC
Confidence 44556677777777776655444333 33334455444 667999999877777754
No 382
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.95 E-value=2.4e+02 Score=29.15 Aligned_cols=98 Identities=15% Similarity=0.178 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHH
Q 004960 134 HREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQ 213 (721)
Q Consensus 134 ~~~~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~ 213 (721)
....|+..+.++++...-++...-..++..+.++|.- ++..........|.++.-+.+...... -.+ +++.+.+
T Consensus 279 LLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr-~n~~Ll~lv~~FLkKLSIf~eNK~~M~-~~~----iveKL~k 352 (791)
T KOG1222|consen 279 LLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDR-SNSSLLTLVIKFLKKLSIFDENKIVME-QNG----IVEKLLK 352 (791)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcc-cchHHHHHHHHHHHHhhhhccchHHHH-hcc----HHHHHHH
Confidence 3457777888888777655555567888999999977 777777778888877766654332211 122 3444444
Q ss_pred HhhcCCHHHHHHHHHHHHHHhcCc
Q 004960 214 CLASGEEDVAVIAFEIFDELIESP 237 (721)
Q Consensus 214 ~l~~~~~~~~~~a~~~l~~l~~~~ 237 (721)
.+....++.++..+..+..+.-..
T Consensus 353 lfp~~h~dL~~~tl~LlfNlSFD~ 376 (791)
T KOG1222|consen 353 LFPIQHPDLRKATLMLLFNLSFDS 376 (791)
T ss_pred hcCCCCHHHHHHHHHHhhhccccc
Confidence 667788999999888887776443
No 383
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=56.63 E-value=1.2e+02 Score=25.37 Aligned_cols=123 Identities=9% Similarity=0.043 Sum_probs=64.0
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHccccCCCCCcc-----hHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccccH
Q 004960 83 LIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPD-----LLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHF 157 (721)
Q Consensus 83 ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~~~-----ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~ 157 (721)
|...+....+..-+.....-++.+|-. | -.|.. .+......+..++....+.++-.+.++|-+.... .++
T Consensus 21 LV~efq~tt~~eakeqv~ANLANFAYD--P-~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~--~~I 95 (173)
T KOG4646|consen 21 LVDEFQTTTNIEAKEQVTANLANFAYD--P-INYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNA--KFI 95 (173)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhccC--c-chHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHH--HHH
Confidence 333333335555554444444444321 2 24543 4566677777778777777777777766433211 112
Q ss_pred H--HHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHh
Q 004960 158 A--DMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCL 215 (721)
Q Consensus 158 ~--~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l 215 (721)
. .-+|.++..+++ +...+-..++.++..+..... .. ...-+-|.++..+.++-
T Consensus 96 ~ea~g~plii~~lss-p~e~tv~sa~~~l~~l~~~~R-t~---r~ell~p~Vv~~v~r~~ 150 (173)
T KOG4646|consen 96 REALGLPLIIFVLSS-PPEITVHSAALFLQLLEFGER-TE---RDELLSPAVVRTVQRWR 150 (173)
T ss_pred HHhcCCceEEeecCC-ChHHHHHHHHHHHHHhcCccc-ch---hHHhccHHHHHHHHHHH
Confidence 1 124667778888 666666666666655543322 11 11223455666555443
No 384
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=55.54 E-value=3e+02 Score=29.83 Aligned_cols=409 Identities=12% Similarity=0.114 Sum_probs=195.9
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCC-----------HHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHH--
Q 004960 70 KLSPQLKQLVKQSLIESITLEHS-----------APVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHRE-- 136 (721)
Q Consensus 70 ~~~~~~~~~i~~~ll~~l~~e~~-----------~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~-- 136 (721)
.++++..+.+-+..+..+..... ..+-+..|+.+|.+++..+.. .-..++..|.+..++.+ ....
T Consensus 27 ~l~~~l~~~le~i~F~~lk~~d~~~~~~~~s~~~~~~~~l~AellG~lS~~rF~s-VsdRF~~eL~~~~~~~~-~~~~~~ 104 (552)
T PF14222_consen 27 SLTEELGDKLEEIVFDQLKTADPVSEQPSTSPLRLANWDLFAELLGVLSEIRFVS-VSDRFIAELEKLRKDSN-DAESKI 104 (552)
T ss_pred CCCHHHHHHHHHHHHHHHhccCccccccccchhHHHHHHHHHHHHHHHHhhhChH-HHHHHHHHHHHhcccCC-chHHHH
Confidence 45666667777777776664211 145577788888888765542 44567777777764222 1111
Q ss_pred -HHHHHHHHhh-hhhhhcccccHHHHHHHHHHhhCCC-CCHHHHHHHHHHHHHhhhhc----CChhhHHHHHhhHHHHHH
Q 004960 137 -VALILFSSLT-ETIGQTFRPHFADMQALLLKCLQDE-TSNRVRIAALKAIGSFLEFT----NDGAEVVKFREFIPSILN 209 (721)
Q Consensus 137 -~al~~l~~i~-~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~vr~~a~~~l~~l~~~~----~~~~~~~~~~~~l~~ll~ 209 (721)
..+..+..+- +..|.+--+..-+++.-+.++.... .+.+++.+-+..+..++.-. ........+.+.+..+..
T Consensus 105 ~~li~GMr~lrlk~~p~e~~e~s~~Fm~~l~~~f~~~h~~~~ik~A~~~~l~~lLlPvA~~~~~evn~P~W~~~v~~i~~ 184 (552)
T PF14222_consen 105 ELLIMGMRYLRLKMYPEEAFEESAEFMQSLAKFFLEAHKKSDIKHAYCEVLVELLLPVAATATAEVNHPKWKEAVETIYP 184 (552)
T ss_pred HHHHhhcceeeecCCCHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHH
Confidence 1111111111 1112111112234444445555442 35669999888888764321 111111234445555555
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHhcCc-ccchhhhHH-HHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhH-----h
Q 004960 210 VSRQCLASGEEDVAVIAFEIFDELIESP-APLLGDSVK-SIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKY-----N 282 (721)
Q Consensus 210 ~l~~~l~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~-~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~-----~ 282 (721)
.+.+++.. ++....++.....+.-.. +.+|...-. .+++.+...+. +...|..++.++..++-..- +
T Consensus 185 ~~~~~~~K--~khw~~afPL~t~lLCvS~~e~F~~~W~~~~i~~~~~klK----dk~~r~~~l~~l~RLlWvYL~~r~~E 258 (552)
T PF14222_consen 185 RAAKMMSK--PKHWNVAFPLVTTLLCVSPKEFFLSNWLPSLIESLISKLK----DKETRPVALECLSRLLWVYLVYRCPE 258 (552)
T ss_pred HHHHHHhC--cchhhhHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhhcC----ChhhhHHHHHHHHHHHHHHHhcccCC
Confidence 44444432 444445666666655433 344444444 45555544443 33567888877776653322 0
Q ss_pred ---hhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcCccccHh-HHHHHHhhhc-----CCChhh
Q 004960 283 ---SLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPP-VFEFASVSCQ-----NASPKY 353 (721)
Q Consensus 283 ---~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~-i~~~l~~~l~-----~~~~~~ 353 (721)
... .-+..++..++|.-...-- .-|..+-....+.+..++....+..+.. +++.+..... +-+++.
T Consensus 259 s~n~T~--krL~~i~~~lfp~~kk~~i---~~D~~~~~~lv~ii~~I~~~~~df~~~~iI~~LL~~~~~~s~~~~l~pER 333 (552)
T PF14222_consen 259 SLNNTT--KRLDSIFKLLFPKGKKGWI---PRDPEPLNPLVQIIRFIGYKHLDFAFRNIIFPLLNVSFNGSSLENLNPER 333 (552)
T ss_pred CchHHH--HHHHHHHHHHccCCCCccc---CCChhhhhhHHHHHHhHhhhCcchHHHHHHHHHHccccccccccccChhH
Confidence 011 1245566556543332100 0011223334445555555555555444 4555443332 235666
Q ss_pred HhHHHHHHHHHhhccHHHHHH-------------------hHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHH
Q 004960 354 REAAVTAIGIISEGCAEWMKE-------------------KLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIV 414 (721)
Q Consensus 354 r~~al~~l~~i~~~~~~~~~~-------------------~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 414 (721)
..-++.++-.++......-.+ ...+.++ .....++.....-...+.+++.+...+...+.
T Consensus 334 m~IgIRA~l~Il~~~e~~e~p~~p~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~i~~~~~~~~~~l~~il~~cD~~~G 412 (552)
T PF14222_consen 334 MIIGIRAFLAILSDLEQKEKPPPPPPTSDPSGNTLRVKYTPSNEYLS-NEIAKNSGIREYYEEFCRALGKILRLCDNTFG 412 (552)
T ss_pred HHHHHHHHHHHHHhhccCCCCCCCCCcCCCCCcccccccCccccccc-chhhccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 667787777777653211110 0000111 00111112222234455666666555533221
Q ss_pred Hh-h-hhHHH---------HHHHhccCCChHHHHHHHHHHHHHHHhhhhccccc--hHHHHHHHHHhhcCCChhHHHHHH
Q 004960 415 SH-Y-ESVLP---------CILNALEDESDEVKEKSYYALAAFCEDMGEEILPF--LDPLMGKLLAALENSPRNLQETCM 481 (721)
Q Consensus 415 ~~-~-~~~l~---------~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~--~~~i~~~l~~~l~~~~~~v~~~~l 481 (721)
.. + +.-.. ...-...++...-+......+...++..+--+... ...+++.|.+..-+.++.+++.+.
T Consensus 413 ~~~~~~~~~~~~~~~t~~~~f~f~~~~d~~~~~~~~~~Lf~t~i~aiPrcL~~~i~~~~lielL~R~tvHvd~~I~~~A~ 492 (552)
T PF14222_consen 413 SQLWLDEKQSSSKPKTPFSSFSFGRNDDMVTDQKPQLDLFRTCIQAIPRCLPSSIPFKSLIELLCRGTVHVDPNIRESAA 492 (552)
T ss_pred hhhccCcccccCCCCCCcccccccccccccccccchhHHHHHHHHHccccCCCCCcHHHHHHHHhcccccCCHHHHHHHH
Confidence 11 0 00000 00000001111111333455666666655433322 468888888888888999999999
Q ss_pred HHHHHHHHHhh
Q 004960 482 SAIGSVAAAAE 492 (721)
Q Consensus 482 ~~l~~l~~~~~ 492 (721)
.++..++...+
T Consensus 493 ~aLk~la~~~p 503 (552)
T PF14222_consen 493 QALKRLARDKP 503 (552)
T ss_pred HHHHHHHHcCC
Confidence 99999988753
No 385
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=54.42 E-value=3.3e+02 Score=29.87 Aligned_cols=69 Identities=19% Similarity=0.227 Sum_probs=41.5
Q ss_pred HHHHhHHHHHHHHHhhcCCC----CHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHH
Q 004960 371 WMKEKLESVLHIVLGALRDP----EQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAF 446 (721)
Q Consensus 371 ~~~~~l~~i~~~l~~~l~d~----~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l 446 (721)
.+.++.+.++..+-..+.|+ ..-+|..|+++++.+...-.. ..=+.+++.+-|+.+.+|.-+..|+..+
T Consensus 684 sie~fr~~iln~l~nY~~d~rGDVgs~iR~~a~klm~SfL~kD~~-------~~~~y~iR~~~dki~~lR~l~yqa~eqI 756 (993)
T COG5234 684 SIEEFRKEILNVLSNYLTDTRGDVGSWIRKPAMKLMSSFLVKDSS-------GKKLYIIRQTFDKIDSLRGLAYQALEQI 756 (993)
T ss_pred cHHHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHhhcccc-------CCchhHHHHhhcccHHHHhhhhhhhhhe
Confidence 44455556666666666544 456888888888875432111 1112456666777777787777766654
No 386
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=54.16 E-value=1.4e+02 Score=26.19 Aligned_cols=66 Identities=21% Similarity=0.265 Sum_probs=35.9
Q ss_pred ChHHHHHHHHHHHHHhcCCCcHHHHHHHHhcC-CChhHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHHHHHHhhcC
Q 004960 16 DNDARRQAEDQIKRLAKDPQVVPALVQHLRTA-KTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEH 91 (721)
Q Consensus 16 d~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~-~~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i~~~ll~~l~~e~ 91 (721)
|..+.++|.+.|.+.. .++ ....++++... .++.||.+|+..|++ .+++........|+|+|.-|.
T Consensus 59 ~~~e~~e~~~lL~~W~-~i~-~~~aLeLL~~~f~~~~VR~yAV~~L~~--------~sd~eL~~yL~QLVQaLKyE~ 125 (166)
T cd00870 59 DEQEVKQALELMPKWA-KID-IEDALELLSPYFTNPVVRKYAVSRLKL--------ASDEELLLYLLQLVQALKYEN 125 (166)
T ss_pred CHHHHHHHHHHHhcCC-CCC-HHHHHHHcCccCCCHHHHHHHHHHHHh--------CCHHHHHHHHHHHHHHHHhcc
Confidence 4445555555554442 122 34445555442 467777777766654 245555555566677776553
No 387
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=53.91 E-value=5.2e+02 Score=32.00 Aligned_cols=145 Identities=12% Similarity=0.037 Sum_probs=84.0
Q ss_pred CChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcCccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhc
Q 004960 288 KLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEG 367 (721)
Q Consensus 288 ~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~ 367 (721)
++++.++...-.++...+ ..++..+...+..+-..+....-..++..+...+.+.+.....+|+..+..++..
T Consensus 431 ~~f~siL~la~~Ll~S~e-------~~v~~FG~~~Y~~lF~~fds~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~ 503 (1426)
T PF14631_consen 431 DYFPSILSLAQSLLRSKE-------PSVREFGSHLYKYLFKEFDSYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEK 503 (1426)
T ss_dssp TSHHHHHHHHHHHHTSSS-------HHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc
Confidence 456666666555565543 5677777777777777665433456777777766666677788999999999987
Q ss_pred cHHHHHHhHHHHHHHHHhhcCCCCH-hHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHH
Q 004960 368 CAEWMKEKLESVLHIVLGALRDPEQ-FVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYY 441 (721)
Q Consensus 368 ~~~~~~~~l~~i~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~ 441 (721)
.++.+.++- ..+..++..+.+=++ .+| ..+..++.++-.-.......-.++--.+-+.|.+++...+.-..-
T Consensus 504 ~~~~l~~fa-~~l~giLD~l~~Ls~~qiR-~lf~il~~La~~~~~~~s~i~del~ivIRKQLss~~~~~K~~GII 576 (1426)
T PF14631_consen 504 NPSELQPFA-TFLKGILDYLDNLSLQQIR-KLFDILCTLAFSDSSSSSSIQDELHIVIRKQLSSSNPKYKRIGII 576 (1426)
T ss_dssp -HHHHHHTH-HHHHGGGGGGGG--HHHHH-HHHHHHHHHHHHHSS---HHHHHHHHHHHHHHT-SSHHHHHHHHH
T ss_pred cHHHHHHHH-HHHHHHHHHHhcCCHHHHH-HHHHHHHHHhcCCcccchhhHHHHHHHHHHhhcCCcHHHHHHhHH
Confidence 777776653 334445555554333 344 456777776643322111222445455556777777766544333
No 388
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=53.13 E-value=2.1e+02 Score=27.14 Aligned_cols=83 Identities=20% Similarity=0.260 Sum_probs=47.2
Q ss_pred hhhHHHHHHHhccCCC--hHHHHHHHHHHHHHHHhhh---hccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHh
Q 004960 417 YESVLPCILNALEDES--DEVKEKSYYALAAFCEDMG---EEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAA 491 (721)
Q Consensus 417 ~~~~l~~l~~~l~~~~--~~v~~~a~~al~~l~~~~~---~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~ 491 (721)
.++=++.|.+.+.+++ .-+|.+|+.++..++..-+ +.+..|+..++... +.. +++. +++.++...
T Consensus 109 ~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~---l~~-~~~~------~~~~Lv~~~ 178 (249)
T PF06685_consen 109 GDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYF---LER-NPSF------LWGSLVADI 178 (249)
T ss_pred hCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH---hcc-CchH------HHHHHHHHH
Confidence 3444566667777774 5599999999999887653 34444555544332 222 2222 334444322
Q ss_pred hhcchhhHHHHHHHHHHHHhc
Q 004960 492 EQAFIPYAERVLELLKIFMVL 512 (721)
Q Consensus 492 ~~~~~~~~~~i~~~l~~~l~~ 512 (721)
+.-|..+++|.+.+....
T Consensus 179 ---~dL~~~EL~~~I~~~f~~ 196 (249)
T PF06685_consen 179 ---CDLYPEELLPEIRKAFED 196 (249)
T ss_pred ---HhcCHHHhHHHHHHHHHc
Confidence 223556677777776643
No 389
>PF14961 BROMI: Broad-minded protein
Probab=52.53 E-value=1.2e+02 Score=35.52 Aligned_cols=86 Identities=13% Similarity=0.161 Sum_probs=62.0
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHccccC-CCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcc-cccHH
Q 004960 81 QSLIESITLEHSAPVRRASANVVSIIAKYAVP-AGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTF-RPHFA 158 (721)
Q Consensus 81 ~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~-~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~-~~~~~ 158 (721)
+.+++.|..+.+..+|..+.+++..+--.+.. .+.|+.+...|...+.++|+.....++....+.+...+-.+ .+...
T Consensus 164 q~i~d~ld~~~P~evR~eAlq~Lc~~p~SDVls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fssSpl~~trEiYt 243 (1296)
T PF14961_consen 164 QLIADKLDPGQPKEVRLEALQILCSAPPSDVLSCESWSVLRENLTDALSDPDPEISDASLRFHAKMFSSSPLNMTREIYT 243 (1296)
T ss_pred HHHHHhcCCCCchHHHHHHHHHHhcCChhhccccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCchhhhHHHHH
Confidence 45556666567889999999998776433332 35899999999999999999999999999988887665433 22334
Q ss_pred HHHHHHHH
Q 004960 159 DMQALLLK 166 (721)
Q Consensus 159 ~l~~~l~~ 166 (721)
.++..+..
T Consensus 244 sL~~~l~~ 251 (1296)
T PF14961_consen 244 SLANHLES 251 (1296)
T ss_pred HHHHHHHH
Confidence 44444433
No 390
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=51.91 E-value=1.3e+02 Score=24.32 Aligned_cols=87 Identities=14% Similarity=0.231 Sum_probs=54.8
Q ss_pred CCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHH-HHHHHHh
Q 004960 390 PEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPL-MGKLLAA 468 (721)
Q Consensus 390 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i-~~~l~~~ 468 (721)
..+.+...+.|++... .+...++..+.+.+....+.-+..++..+..+++.++.....++... .+.+...
T Consensus 17 S~~~I~~lt~~a~~~~---------~~a~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~ 87 (114)
T cd03562 17 SQPSIQTLTKLAIENR---------KHAKEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDA 87 (114)
T ss_pred cHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH
Confidence 4555555555554432 34557777777777777777788899999999999865544333333 4445555
Q ss_pred hcCCChhHHHHHHHHHH
Q 004960 469 LENSPRNLQETCMSAIG 485 (721)
Q Consensus 469 l~~~~~~v~~~~l~~l~ 485 (721)
....++.+|..+...+.
T Consensus 88 ~~~~~~~~r~kl~rl~~ 104 (114)
T cd03562 88 YEKVDEKTRKKLERLLN 104 (114)
T ss_pred HHhCCHHHHHHHHHHHH
Confidence 55566666665554443
No 391
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=51.21 E-value=1.6e+02 Score=26.97 Aligned_cols=83 Identities=23% Similarity=0.263 Sum_probs=51.6
Q ss_pred HHHHHHHcCc-cccHhHHHHHHhhhcCCC-hhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHH
Q 004960 323 IDTMALNLAK-HVFPPVFEFASVSCQNAS-PKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASF 400 (721)
Q Consensus 323 l~~l~~~~~~-~~~~~i~~~l~~~l~~~~-~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~ 400 (721)
++.++..+.. ...+.+++......++.+ |..|.+.+..+...-+. +....+++.+-..++|.+..|+.+.-|
T Consensus 103 vD~la~~~V~~~~~~~li~~~~a~~~~~~~w~rraaiv~~l~~~k~~------~~~~~if~i~E~~l~d~e~fV~KAigW 176 (222)
T COG4912 103 VDTLANHFVGIPLWPDLIEEWAADAEEDNRWERRAAIVHQLVYKKKT------LDLLEIFEIIELLLGDKEFFVQKAIGW 176 (222)
T ss_pred HHHHHHHhhccccCHHHHHHHHhccccchHHHHHHHHHHHHHHhcCc------cchhHHHHHHHHHccChHHHHHHHHHH
Confidence 4444544432 344566666544444444 44444444444444333 223367888888999999999999999
Q ss_pred HHHHHHhhhhH
Q 004960 401 ALGQFAEYLQP 411 (721)
Q Consensus 401 ~l~~l~~~~~~ 411 (721)
+|..++...++
T Consensus 177 aLrq~~k~~~e 187 (222)
T COG4912 177 ALRQIGKHSNE 187 (222)
T ss_pred HHHHHHhhchH
Confidence 99999985443
No 392
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=51.04 E-value=1.4e+02 Score=24.61 Aligned_cols=84 Identities=15% Similarity=0.120 Sum_probs=51.2
Q ss_pred HHHHHHHHcC-ccccHhHHHHHHhhh---cCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcC----CC---
Q 004960 322 VIDTMALNLA-KHVFPPVFEFASVSC---QNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALR----DP--- 390 (721)
Q Consensus 322 ~l~~l~~~~~-~~~~~~i~~~l~~~l---~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~----d~--- 390 (721)
.+..++...- ..-+..++..+...+ ...+|....-|+..+..+..+.+..+...+..-...+..+.+ |+
T Consensus 23 ~l~eIa~~t~~~~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~~~~~I~~l~~f~~~d~~g~ 102 (125)
T PF01417_consen 23 LLAEIAQLTYNSKDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDELRDHIDIIRELQDFQYVDPKGK 102 (125)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHHHHTHHHHHGGGG---BBTTST
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhhcceeeccCCCCc
Confidence 3444544332 245567788887777 667899999999999999987776555554333333332211 22
Q ss_pred --CHhHHHHHHHHHHHH
Q 004960 391 --EQFVRGAASFALGQF 405 (721)
Q Consensus 391 --~~~vr~~a~~~l~~l 405 (721)
...||..|-..+.-+
T Consensus 103 d~~~~VR~~A~~i~~lL 119 (125)
T PF01417_consen 103 DQGQNVREKAKEILELL 119 (125)
T ss_dssp BHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHh
Confidence 234777776665544
No 393
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=50.93 E-value=63 Score=25.48 Aligned_cols=57 Identities=21% Similarity=0.227 Sum_probs=37.3
Q ss_pred HhHHHHHHHHHhhccHHHHHH--hHHHHHHHHHhhc--CCCCHhHHHHHHHHHHHHHhhhhH
Q 004960 354 REAAVTAIGIISEGCAEWMKE--KLESVLHIVLGAL--RDPEQFVRGAASFALGQFAEYLQP 411 (721)
Q Consensus 354 r~~al~~l~~i~~~~~~~~~~--~l~~i~~~l~~~l--~d~~~~vr~~a~~~l~~l~~~~~~ 411 (721)
|...+..++.++-..+..-.. .. .-+|.++... ++.+|.+|+-|.+|+..+++..++
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~-~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~e 63 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVREL-GGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPE 63 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHc-CChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHH
Confidence 445566777777655422111 11 2255555544 467999999999999999998754
No 394
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=50.77 E-value=94 Score=33.64 Aligned_cols=149 Identities=17% Similarity=0.194 Sum_probs=78.6
Q ss_pred cHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHH-----HHhhcC------CCCHhHHHHHHHHHH
Q 004960 335 FPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHI-----VLGALR------DPEQFVRGAASFALG 403 (721)
Q Consensus 335 ~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~-----l~~~l~------d~~~~vr~~a~~~l~ 403 (721)
...+++++.....+.+...|..+...++.+....+-.....+-+++.. ++..++ +.++.+-..+...++
T Consensus 244 l~~iV~f~~~s~Ss~~~~~rf~~a~~~aki~srl~w~l~~sfi~ii~~~~en~~~s~l~~~cdii~tnel~w~~~i~~~a 323 (993)
T COG5234 244 LEVIVDFLLSSVSSIDSFVRFSAAKGLAKIISRLPWNLAESFIDIIELMTENMFLSPLENTCDIIITNELVWHGAILFFA 323 (993)
T ss_pred HHHHHHHHHcCcccccHHHHHHHHhhHHHHHhhcccccHHHHHHHHHhcccccchhhhhCccceeecchHHHHHHHHHHH
Confidence 345666666667777888999999999888887653222222223332 222232 335554444444444
Q ss_pred HHHhhhhHHHHHhhhh-HHHHHHHhccCCC--------hHHHHHHHHHHHHHHHhhhhccccchHHHH-HHHHH-hhcCC
Q 004960 404 QFAEYLQPEIVSHYES-VLPCILNALEDES--------DEVKEKSYYALAAFCEDMGEEILPFLDPLM-GKLLA-ALENS 472 (721)
Q Consensus 404 ~l~~~~~~~~~~~~~~-~l~~l~~~l~~~~--------~~v~~~a~~al~~l~~~~~~~~~~~~~~i~-~~l~~-~l~~~ 472 (721)
++...+- ++.+- +.+.+.++++-.. ..+|.+++..+=.+.+.....+.|-++..+ -.+.+ .+-++
T Consensus 324 -la~~~~i---d~~d~~i~~iI~kg~~y~~~~~~~v~g~~IRdss~f~vWs~~r~~S~s~~~~lqt~L~hll~~~alFDp 399 (993)
T COG5234 324 -LAGAGLI---DYSDCLILPIIEKGLSYEVRYGTRVTGQSIRDSSCFFVWSFYRCYSKSAIEGLQTNLIHLLLQTALFDP 399 (993)
T ss_pred -Hhhcccc---chhhhhhhhheccccceeehheeeeccceeecccceeeeeeeeccccccchhHHHHHHHHHHhhhhcCc
Confidence 3333221 22222 4444445554322 246777776665555553333334344322 23333 56677
Q ss_pred ChhHHHHHHHHHHHH
Q 004960 473 PRNLQETCMSAIGSV 487 (721)
Q Consensus 473 ~~~v~~~~l~~l~~l 487 (721)
+-.+|..+..++-.+
T Consensus 400 el~vRr~a~Aal~E~ 414 (993)
T COG5234 400 ELNVRRAATAALFEV 414 (993)
T ss_pred hhhhhhHHHHHHHHH
Confidence 888888877665444
No 395
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=49.07 E-value=87 Score=27.42 Aligned_cols=57 Identities=30% Similarity=0.508 Sum_probs=42.3
Q ss_pred CCHHHHHHHHHHHHHHHccccCCCCC-----cchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhh
Q 004960 91 HSAPVRRASANVVSIIAKYAVPAGEW-----PDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQ 151 (721)
Q Consensus 91 ~~~~vr~~~~~~l~~i~~~~~~~~~~-----~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~ 151 (721)
.|..+- ++++..+....-+ +.| ..++|.+..+++|+...+...|+.++..+.+.+.+
T Consensus 41 ~D~svl---vD~L~vl~~~~~~-~~~tLd~c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~f~~ 102 (164)
T PF13925_consen 41 NDPSVL---VDVLSVLNQSLKP-EKWTLDLCVDLLPLIEELLQSKYESYISVALEMLRSILKKFGP 102 (164)
T ss_pred CCchHH---HHHHHHHHHhcCc-CcccHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHH
Confidence 455443 6777766632222 245 67999999999999999999999999999877654
No 396
>KOG2842 consensus Interferon-related protein PC4 like [Cytoskeleton]
Probab=48.69 E-value=3e+02 Score=27.71 Aligned_cols=207 Identities=18% Similarity=0.190 Sum_probs=104.9
Q ss_pred cCCChhhHhHHHHHHHH--HhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhH--HHHHhhhhHHH
Q 004960 347 QNASPKYREAAVTAIGI--ISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQP--EIVSHYESVLP 422 (721)
Q Consensus 347 ~~~~~~~r~~al~~l~~--i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~~~l~ 422 (721)
.+.+...|.+++..+.. +++..++.+.+....+...+..+++-+...-+..+...+|..+...++ ..........|
T Consensus 70 ~dk~AktR~~~le~i~lalt~r~l~~fi~e~~~tl~~~~~k~~~k~~sd~q~~a~~~~g~~~vqlg~~q~~ee~~~t~~~ 149 (427)
T KOG2842|consen 70 KDKSAKTRQEALEKIYLALTSRHLPEFILENRATLEDLLEKCLNKPKSDEQLLAAALIGLLCVQAGPGQEEEEWTKTLGP 149 (427)
T ss_pred HhcchhHHHHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhccCcchhhHHHhccch
Confidence 34556788888776554 445677888888888888999999877766666666666666655442 22222333333
Q ss_pred HHHHhccC--CChHHHHHHHHHHHHHHHhhhhccc---cchHHHHHHHHHh-hcCCCh---------hHHHHHHHHHHHH
Q 004960 423 CILNALED--ESDEVKEKSYYALAAFCEDMGEEIL---PFLDPLMGKLLAA-LENSPR---------NLQETCMSAIGSV 487 (721)
Q Consensus 423 ~l~~~l~~--~~~~v~~~a~~al~~l~~~~~~~~~---~~~~~i~~~l~~~-l~~~~~---------~v~~~~l~~l~~l 487 (721)
.+...+.+ .....+..++.+++.-+-.....+. .++.-+-...... +...+. -....++.+.+-+
T Consensus 150 ~~~li~~d~s~sv~~r~~ca~sl~v~~l~a~~d~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~ 229 (427)
T KOG2842|consen 150 FLALILDDESASIKARSICATSLGTACLIAEADIIELGSFLICLEESFGAVYLEDDETVVVCACQNLGLLLTCLTAWSLL 229 (427)
T ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcccCCCccccccchhHHHHHHHHHHHHH
Confidence 33333333 3445666666666544433322111 1111111111111 222211 1122333333333
Q ss_pred HHHhhhcchhhHHH-HHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHh
Q 004960 488 AAAAEQAFIPYAER-VLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAIS 553 (721)
Q Consensus 488 ~~~~~~~~~~~~~~-i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~ 553 (721)
....+.....+... ..|.+..++.....+....+..+++.+..+++....+.+-|..+++...+-.
T Consensus 230 Lti~~~~~~~~~~~~~~p~i~~lLs~~~vn~r~aa~et~a~l~e~~q~~~~~f~~~d~e~l~~~lr~ 296 (427)
T KOG2842|consen 230 LTICPEALSEQLDAALAPKLPLLLSSERVNERIAAGETLALLFELAQDSEFDFIYPDMEQLLSTLRD 296 (427)
T ss_pred HHcCccchhhHHHHHhccchHHHhccchhhhhhhhhhhHHHHHHHHhcccccccCCCHHHHHHHHHH
Confidence 33333333333222 4566666664432233334456667777777665555566666666666544
No 397
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=48.39 E-value=5.5e+02 Score=30.69 Aligned_cols=60 Identities=17% Similarity=0.071 Sum_probs=52.6
Q ss_pred hhHHHHHHHHHHHHHHccccccchHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHH
Q 004960 643 DEKAAATQALGLFALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHA 702 (721)
Q Consensus 643 ~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~ 702 (721)
..=..|+-+|++++..-.+.+.++++.++..+.-++++..+.|++.|-+.|.+|+-+...
T Consensus 931 s~~qlalifL~dl~~~~~~~~~~~lP~LLH~~~~~lDH~~~~V~e~a~~lL~~Li~~l~~ 990 (1120)
T PF14228_consen 931 SRGQLALIFLVDLAVEPDEDLREHLPLLLHVIFVLLDHYTPLVQEQARELLVNLIHSLAP 990 (1120)
T ss_pred cHHHHHHHHHHHHHcCCcchHhhhhHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHHhc
Confidence 344678889999988778889999999999999999999999999999999999987654
No 398
>PF05997 Nop52: Nucleolar protein,Nop52; InterPro: IPR010301 Nop52 is believed to be involved in the generation of 28S rRNA [].; GO: 0006364 rRNA processing, 0030688 preribosome, small subunit precursor
Probab=48.29 E-value=1.5e+02 Score=27.46 Aligned_cols=88 Identities=10% Similarity=0.079 Sum_probs=63.8
Q ss_pred HHHHhccCCChHHHHHHHHHHHHHHHhhhhc-cccchHHHHHHHHHhhc-CCChhHHHHHHHHHHHHHHHhhh--cchhh
Q 004960 423 CILNALEDESDEVKEKSYYALAAFCEDMGEE-ILPFLDPLMGKLLAALE-NSPRNLQETCMSAIGSVAAAAEQ--AFIPY 498 (721)
Q Consensus 423 ~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~-~~~~~~~i~~~l~~~l~-~~~~~v~~~~l~~l~~l~~~~~~--~~~~~ 498 (721)
.+.+.|.+.++.+|..|...|...+...... -..-+..+...|.-++= ++.+-+|++...-|+.++..... ....|
T Consensus 4 ~~~k~LAs~d~~~R~~al~~l~~~l~~~~~~~~~~~~~kLWKGLfy~mWmsDkpl~Q~~la~~la~l~~~~~~~~~~~~f 83 (217)
T PF05997_consen 4 KFAKKLASNDKKTRDRALKSLRKWLSKRSQLLTELDMLKLWKGLFYCMWMSDKPLVQEELAEELASLIHSFPSEKAALLF 83 (217)
T ss_pred HHHHHhhcCChhHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhcChHHHHHH
Confidence 3567788888999999999999998877543 33445677777777754 45678899999999999888764 34456
Q ss_pred HHHHHHHHHHHH
Q 004960 499 AERVLELLKIFM 510 (721)
Q Consensus 499 ~~~i~~~l~~~l 510 (721)
+..++..+..-.
T Consensus 84 ~~~f~~tm~rEW 95 (217)
T PF05997_consen 84 LKAFWETMRREW 95 (217)
T ss_pred HHHHHHHHHHHH
Confidence 666555554433
No 399
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=47.88 E-value=58 Score=21.20 Aligned_cols=36 Identities=14% Similarity=0.224 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHccc
Q 004960 74 QLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYA 110 (721)
Q Consensus 74 ~~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~ 110 (721)
...+++|+-+++.|.+ .++..|..+..+++.+.+..
T Consensus 3 ~~~eYLKNvl~~fl~~-~~~~~~~~llpvi~tlL~fs 38 (46)
T PF01465_consen 3 INLEYLKNVLLQFLES-REPSEREQLLPVIATLLKFS 38 (46)
T ss_dssp HHHHHHHHHHHHHHTT-SS---HHHHHHHHHHHTT--
T ss_pred hhHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHCCC
Confidence 3567899999999986 56788888888888887643
No 400
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=47.77 E-value=3.7e+02 Score=28.55 Aligned_cols=145 Identities=10% Similarity=0.123 Sum_probs=82.6
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHhcCCCcH---------HHHHHHHhcCCC---hhHHHHHHHHHHHhhh---hhhc
Q 004960 5 LELLLIQFLMPDNDARRQAEDQIKRLAKDPQVV---------PALVQHLRTAKT---PNVRQLAAVLLRKKIT---GHWA 69 (721)
Q Consensus 5 l~~ll~~~~s~d~~~r~~A~~~L~~~~~~p~~~---------~~l~~il~~~~~---~~vr~~a~~~l~~~i~---~~w~ 69 (721)
...+...+.++++..+..|-.+|.++..+|.|+ ..|..++.++.. ..+-.++...+.-.+. -.|+
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~ 164 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWE 164 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeee
Confidence 456677788899999999999999998887554 445555555432 2222222222211111 3698
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHccccCCCCC---cchHHHHHHhccCCcHHHHHHHHHHHHHhh
Q 004960 70 KLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEW---PDLLPFLFQFSQSEQEEHREVALILFSSLT 146 (721)
Q Consensus 70 ~~~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~---~~ll~~l~~~l~~~~~~~~~~al~~l~~i~ 146 (721)
.++......+.... .... .+.++-..+.+++..+........+| ...+..++..++..+......|+..+..++
T Consensus 165 ~~~~~fV~~~a~~V--~~~~-~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~ 241 (713)
T KOG2999|consen 165 SVSNDFVVSMASYV--NAKR-EDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALF 241 (713)
T ss_pred ecccHHHHHHHHHH--hhhh-hcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 88876666554443 2222 24445555555665554322111233 234677777777666655555777777777
Q ss_pred hhhhhc
Q 004960 147 ETIGQT 152 (721)
Q Consensus 147 ~~~~~~ 152 (721)
...++.
T Consensus 242 ~~a~~~ 247 (713)
T KOG2999|consen 242 RKAPDD 247 (713)
T ss_pred hhCChH
Confidence 665543
No 401
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=46.30 E-value=88 Score=27.97 Aligned_cols=58 Identities=9% Similarity=0.013 Sum_probs=40.9
Q ss_pred CChhhHhHHHHHHHHHhhccHH-HHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHH
Q 004960 349 ASPKYREAAVTAIGIISEGCAE-WMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFA 406 (721)
Q Consensus 349 ~~~~~r~~al~~l~~i~~~~~~-~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~ 406 (721)
.+...-..++.++..++..-.. ...-.-+..+..+..++.++++.+|..++..|+.+|
T Consensus 128 ~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 128 EDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 3455667788899888875321 111113567888999999999999999999998876
No 402
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=46.21 E-value=2.3e+02 Score=25.64 Aligned_cols=151 Identities=17% Similarity=0.159 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHccccCC-CCCcchHHHHHHhccCCc-----HHHHHHHHHHHHHhhh
Q 004960 74 QLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPA-GEWPDLLPFLFQFSQSEQ-----EEHREVALILFSSLTE 147 (721)
Q Consensus 74 ~~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~-~~~~~ll~~l~~~l~~~~-----~~~~~~al~~l~~i~~ 147 (721)
+....+...+++... |.=..+|..++.++..+.....+. ...| -.+.+...+..+. |..-...+..+..+..
T Consensus 3 ~~~~~~~~~llrqa~-EKiDrvR~~A~~~l~~ll~~~~~~~~~ip-~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL~ 80 (193)
T PF12612_consen 3 ELVQQIIGGLLRQAA-EKIDRVREVAGKCLQRLLHSQDPTIPHIP-HREELQDIFPSESEASLNWSSSSEYFPRLVKLLD 80 (193)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCccccCCC-cHHHHHHHcccccccccccCCHHHHHHHHHHHhc
Confidence 344455555555554 567889999999999988544331 1222 2455555544332 3322233333333321
Q ss_pred hhhhcccccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHH
Q 004960 148 TIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAF 227 (721)
Q Consensus 148 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~ 227 (721)
. ..+...++..+...... .+..+...+..+|..++...... ......++..++..+.... .+..+..-.+
T Consensus 81 ~-----~~y~~~ll~Glv~S~G~-~tesl~~~s~~AL~~~~~~~~~~--~~~~~~v~~~l~~il~~~~--~~dRv~vP~l 150 (193)
T PF12612_consen 81 L-----PEYRYSLLSGLVVSAGG-LTESLVRASSAALLSYLRELSDS--PEELEQVLSDLLSILKENL--RNDRVVVPLL 150 (193)
T ss_pred c-----HHHHHHHHhHHHhcCCC-CchhHHHHHHHHHHHHHHHhhcC--HHHHHHHHHHHHHHHHHhC--CCCCeeecHH
Confidence 1 23445555555555555 56677777777877776532111 2223445555555443322 3344445556
Q ss_pred HHHHHHhcC
Q 004960 228 EIFDELIES 236 (721)
Q Consensus 228 ~~l~~l~~~ 236 (721)
+++..+.+.
T Consensus 151 ~tl~~Ll~~ 159 (193)
T PF12612_consen 151 KTLDFLLSS 159 (193)
T ss_pred HHHHHHHhC
Confidence 666555543
No 403
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=46.04 E-value=3e+02 Score=27.02 Aligned_cols=108 Identities=15% Similarity=0.146 Sum_probs=64.7
Q ss_pred HHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHH--HHHHHHHHHHHHHhhhhccc
Q 004960 378 SVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEV--KEKSYYALAAFCEDMGEEIL 455 (721)
Q Consensus 378 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v--~~~a~~al~~l~~~~~~~~~ 455 (721)
+++..+++.+..++| +|......+-.++..++ ...|+..-+..+-..+++-+..+ +.....++.+.+...+. .
T Consensus 107 ~vLsnLfn~~d~~~~-aR~~Vy~~lv~la~~~~--~~~~i~~~lk~~~~~lkew~~~vedqrel~r~v~~al~~~k~--~ 181 (378)
T KOG2753|consen 107 QVLSNLFNGVDKPTP-ARYQVYMSLVTLAASCK--LIEYIVPNLKQLDDWLKEWNISVEDQRELLRAVHKALKDNKS--V 181 (378)
T ss_pred HHHHHHHhccCCCch-HHHHHHHHHHHHHhhcc--eeeeecccHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcch--h
Confidence 556667777777777 99888888888877653 22344444455555555544332 34455555555554432 2
Q ss_pred cchHHHHHHHHHhhcCCC-hhHHHHHHHHHHHHHHH
Q 004960 456 PFLDPLMGKLLAALENSP-RNLQETCMSAIGSVAAA 490 (721)
Q Consensus 456 ~~~~~i~~~l~~~l~~~~-~~v~~~~l~~l~~l~~~ 490 (721)
.....++..++......+ ..-|+.+.+|+-..+..
T Consensus 182 ~~s~kvmt~lLgtyt~dnas~AredA~rcV~~av~d 217 (378)
T KOG2753|consen 182 DESSKVMTELLGTYTEDNASEAREDAMRCVVEAVKD 217 (378)
T ss_pred hhHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHcC
Confidence 223455555666666555 66788888887655543
No 404
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=43.96 E-value=93 Score=25.22 Aligned_cols=65 Identities=17% Similarity=0.246 Sum_probs=37.0
Q ss_pred ChHHHHHHHHHHHHHHHhhhh---ccccchHHHHHHHHHhhcCCC----hhHHHHHHHHHHHHHHHhhhcchhhH
Q 004960 432 SDEVKEKSYYALAAFCEDMGE---EILPFLDPLMGKLLAALENSP----RNLQETCMSAIGSVAAAAEQAFIPYA 499 (721)
Q Consensus 432 ~~~v~~~a~~al~~l~~~~~~---~~~~~~~~i~~~l~~~l~~~~----~~v~~~~l~~l~~l~~~~~~~~~~~~ 499 (721)
+++-.+.|+.....+++.-.. .+..+..+++..|+.+=++.+ ...|.+++ -.++-..+....+|+
T Consensus 18 ~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~L~~~f~~~~Fe~~R~~al---val~v~~P~~~~~~L 89 (114)
T PF10193_consen 18 DYEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLHLQNKFDIENFEELRQNAL---VALVVAAPEKVAPYL 89 (114)
T ss_dssp --S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH---TT--TTTTHHHHHHH---HHHHHHSGGGHHH-H
T ss_pred CHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhccccCCccCHHHHHHHHH---HHHHHHhhHHHHHHH
Confidence 355667888888999987655 888899999988887655432 34455554 444555555554443
No 405
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=43.71 E-value=2.4e+02 Score=25.25 Aligned_cols=43 Identities=23% Similarity=0.234 Sum_probs=21.8
Q ss_pred HHHHHhcC-CChhHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHHHHHHhhc
Q 004960 40 LVQHLRTA-KTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLE 90 (721)
Q Consensus 40 l~~il~~~-~~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i~~~ll~~l~~e 90 (721)
.+.++... .++.||++|+..|++ .+++........|+|+|.-|
T Consensus 79 aL~LL~~~~~~~~Vr~yAV~~L~~--------~~d~~l~~yLpQLVQaLr~E 122 (184)
T smart00145 79 ALELLSPKFPDPFVRAYAVERLES--------ASDEELLLYLLQLVQALKYE 122 (184)
T ss_pred HHHHhCccCCCHHHHHHHHHHHHh--------CCHHHHHHHHHHHHHHHHcc
Confidence 34444332 356666666655433 24445555555556666544
No 406
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=43.21 E-value=3.5e+02 Score=27.02 Aligned_cols=76 Identities=13% Similarity=0.190 Sum_probs=43.9
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHhc-CcccchhhhHHHH---HHHHHHhhcC--CCCC---------hHHHHHHHHH
Q 004960 208 LNVSRQCLASGEEDVAVIAFEIFDELIE-SPAPLLGDSVKSI---VHFSLEVSSS--HNLE---------PNTRHQAIQI 272 (721)
Q Consensus 208 l~~l~~~l~~~~~~~~~~a~~~l~~l~~-~~~~~~~~~~~~l---~~~~~~~~~~--~~~~---------~~~r~~a~~~ 272 (721)
+..+.+.+..........+++.+.+++. ..+......+..+ .+.+-..+.. .+.. +++|...+.+
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 3444456676777788899999999998 4444333333221 1111111110 0001 2899999999
Q ss_pred HHHHHHHhHhh
Q 004960 273 ISWLAKYKYNS 283 (721)
Q Consensus 273 l~~l~~~~~~~ 283 (721)
+..+.+..+..
T Consensus 138 ~Lsfl~~~~~~ 148 (330)
T PF11707_consen 138 WLSFLSSGDPE 148 (330)
T ss_pred HHHHHccCCHH
Confidence 99888765443
No 407
>PF14961 BROMI: Broad-minded protein
Probab=42.88 E-value=4.1e+02 Score=31.43 Aligned_cols=130 Identities=14% Similarity=0.127 Sum_probs=77.2
Q ss_pred HHHHHhhcCC-CCHhHHHHHHHHHHHHHhhhhHHHH--HhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccc-
Q 004960 380 LHIVLGALRD-PEQFVRGAASFALGQFAEYLQPEIV--SHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEIL- 455 (721)
Q Consensus 380 ~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~--~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~- 455 (721)
+..+.+.++- .-..||..|++.|..+. +.++. +.++.+-..|..+|.|+++.+...++....+.....+..+.
T Consensus 163 lq~i~d~ld~~~P~evR~eAlq~Lc~~p---~SDVls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fssSpl~~tr 239 (1296)
T PF14961_consen 163 LQLIADKLDPGQPKEVRLEALQILCSAP---PSDVLSCESWSVLRENLTDALSDPDPEISDASLRFHAKMFSSSPLNMTR 239 (1296)
T ss_pred HHHHHHhcCCCCchHHHHHHHHHHhcCC---hhhccccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCchhhhH
Confidence 3556666663 34579998887765543 22332 47888999999999999999999988888888776654432
Q ss_pred cchHHHHHHHHHhhcCCC---h------h----HHHHHHHHHHHHHHH---hhh----cchhhHHHHHHHHHHHHhc
Q 004960 456 PFLDPLMGKLLAALENSP---R------N----LQETCMSAIGSVAAA---AEQ----AFIPYAERVLELLKIFMVL 512 (721)
Q Consensus 456 ~~~~~i~~~l~~~l~~~~---~------~----v~~~~l~~l~~l~~~---~~~----~~~~~~~~i~~~l~~~l~~ 512 (721)
.....++..+..-+.+.+ + + -....+..+.-+..- .+. .-++|+++|+..-..++..
T Consensus 240 EiYtsL~~~l~~~Fls~~~~lptl~~giDi~~~~~~rLLk~vrLlneyq~E~ps~WiRhpeK~mEeIVEsTLsLLs~ 316 (1296)
T PF14961_consen 240 EIYTSLANHLESYFLSQKNSLPTLSSGIDITFPDIERLLKKVRLLNEYQKEVPSFWIRHPEKYMEEIVESTLSLLST 316 (1296)
T ss_pred HHHHHHHHHHHHHHHhccccCccccccccccCccHHHHHHHHHHHHHHHHhcchhhhcCcHHHHHHHHHHHHHHhcc
Confidence 233344444433332211 1 0 123334433333332 222 3456788888777777754
No 408
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=42.37 E-value=2.1e+02 Score=24.24 Aligned_cols=30 Identities=20% Similarity=0.284 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHh
Q 004960 157 FADMQALLLKCLQDETSNRVRIAALKAIGSF 187 (721)
Q Consensus 157 ~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l 187 (721)
.+++-..+..++.+ ++++++..|++|+..+
T Consensus 15 ~~~l~~~~~~LL~~-~d~~vQklAL~cll~~ 44 (141)
T PF07539_consen 15 SDELYDALLRLLSS-RDPEVQKLALDCLLTW 44 (141)
T ss_pred HHHHHHHHHHHHcC-CCHHHHHHHHHHHHHh
Confidence 46677788889999 9999999999998765
No 409
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=41.96 E-value=1.3e+02 Score=26.62 Aligned_cols=77 Identities=14% Similarity=0.211 Sum_probs=45.4
Q ss_pred cchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhh
Q 004960 117 PDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAE 196 (721)
Q Consensus 117 ~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~ 196 (721)
|..+|.+.....-.++.....+...+.....- ...+.+.++.... +++.||..|++++.++-. .
T Consensus 38 p~aL~~~l~sv~w~~~~~v~e~~~lL~~W~~i-------~~~~aLeLL~~~f---~d~~VR~yAV~~L~~~sd-----~- 101 (171)
T cd00872 38 PQALPKLLLSVKWNKRDDVAQMYQLLKRWPKL-------KPEQALELLDCNF---PDEHVREFAVRCLEKLSD-----D- 101 (171)
T ss_pred cHHHHHHHhhCCCCCHHHHHHHHHHHHCCCCC-------CHHHHHHHCCCcC---CCHHHHHHHHHHHHhCCH-----H-
Confidence 56677777766655555555555555544211 1233333332222 468999999999876332 1
Q ss_pred HHHHHhhHHHHHHHH
Q 004960 197 VVKFREFIPSILNVS 211 (721)
Q Consensus 197 ~~~~~~~l~~ll~~l 211 (721)
.+..++|++++.+
T Consensus 102 --eL~~yL~QLVQaL 114 (171)
T cd00872 102 --ELLQYLLQLVQVL 114 (171)
T ss_pred --HHHHHHHHHHHHH
Confidence 2567899999855
No 410
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=41.24 E-value=3.9e+02 Score=26.97 Aligned_cols=168 Identities=13% Similarity=0.121 Sum_probs=90.6
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHH-Hccc-cCCCCCcchHHHHHHhccCC--------------cHHHHHHHHHH
Q 004960 78 LVKQSLIESITLEHSAPVRRASANVVSII-AKYA-VPAGEWPDLLPFLFQFSQSE--------------QEEHREVALIL 141 (721)
Q Consensus 78 ~i~~~ll~~l~~e~~~~vr~~~~~~l~~i-~~~~-~~~~~~~~ll~~l~~~l~~~--------------~~~~~~~al~~ 141 (721)
...+.++++|.+|.|+.|-..+-.-+... ..+. +-......+...|.+.+.+. ..+.....+.+
T Consensus 141 ~~~~~il~~L~~e~dWeV~s~VL~hLp~qL~Nk~Lf~~~~I~~L~~~Lc~~i~d~~~~~~l~~~p~~~~~~D~~~~~~~~ 220 (356)
T PF03542_consen 141 EWFSVILQCLEHETDWEVYSYVLVHLPSQLSNKALFLGADIDQLRNALCSMICDRSFLESLSNKPTGFKRADLQVCVFPV 220 (356)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHhhhhHHhccCcHHHHHHHHHHHHhcccccccccCCCCCCCHHHHHHHHHHH
Confidence 45567788888888887765544444333 2221 11112333344444443221 12444566667
Q ss_pred HHHhhhhhhhcccccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHH
Q 004960 142 FSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEED 221 (721)
Q Consensus 142 l~~i~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~ 221 (721)
|..++......-...-++++..+..++.+ ... ..++.+|.-++-..++ .....+|.++..+.+... ...
T Consensus 221 Ls~LisYh~~~~k~~qd~iV~~l~~GL~s-~~a---~~CI~aLtic~~EmP~-----s~~k~L~~iL~kLs~i~t--t~~ 289 (356)
T PF03542_consen 221 LSALISYHSHFSKQEQDEIVRALESGLGS-KTA---KPCIHALTICCYEMPD-----SMKKLLPSILLKLSKIST--TPN 289 (356)
T ss_pred HHHHHHHHHhcCHhHHHHHHHHHHHHhcc-CcH---HHHHHHHHHHHHHhHH-----HHHHHHHHHHHHHHhhcc--chh
Confidence 77776544322223347888888888866 322 2344555444433322 246678888887655432 444
Q ss_pred HHHHHHHHHHHHhcCc----ccchhhhHHHHHHHHHHhh
Q 004960 222 VAVIAFEIFDELIESP----APLLGDSVKSIVHFSLEVS 256 (721)
Q Consensus 222 ~~~~a~~~l~~l~~~~----~~~~~~~~~~l~~~~~~~~ 256 (721)
+..-.+++|..++..+ ..+..+....++..++...
T Consensus 290 ~Ai~ILEFLs~L~~lP~~ly~nF~~~~y~~VF~I~l~Y~ 328 (356)
T PF03542_consen 290 MAIHILEFLSSLSRLPNHLYSNFTEDEYKRVFAIALPYT 328 (356)
T ss_pred hHHHHHHHHHHHhhCcHHHhcCCCHHHHHHHHHHHhhcc
Confidence 5556777777777655 2344455555666665544
No 411
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=41.11 E-value=3.2e+02 Score=27.01 Aligned_cols=19 Identities=16% Similarity=0.030 Sum_probs=14.4
Q ss_pred CHhHHHHHHHHHHHHHhhh
Q 004960 391 EQFVRGAASFALGQFAEYL 409 (721)
Q Consensus 391 ~~~vr~~a~~~l~~l~~~~ 409 (721)
...+|.+|+.|+..+...-
T Consensus 51 ~f~lR~AA~~c~kay~~~N 69 (312)
T PF04869_consen 51 PFDLRCAALYCFKAYFYNN 69 (312)
T ss_dssp -HHHHHHHHHHHHHHHTT-
T ss_pred chHHHHHHHHHHHHHHhcC
Confidence 5678999999999887653
No 412
>PF06786 UPF0253: Uncharacterised protein family (UPF0253); InterPro: IPR009624 This is a group of proteins of unknown function.
Probab=41.00 E-value=1.2e+02 Score=20.98 Aligned_cols=51 Identities=22% Similarity=0.299 Sum_probs=36.9
Q ss_pred HHHHHHHHHHccccccchHHHHHHHHHhcccC------CChhHHHHHHHHHHHHHHH
Q 004960 649 TQALGLFALHTKSSYAPFLEESLKILVRHASY------FHEDVRYQAVFALKNILTA 699 (721)
Q Consensus 649 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~vr~~a~~~l~~l~~~ 699 (721)
++.+..+-...|+.=.-|+++-+...++.+++ ..+.||+.|+-+-..|+-+
T Consensus 5 CeliR~~ya~IgSGd~gYiP~Ai~calk~Ln~iAad~~Lp~~vRE~AAfAAANLliS 61 (66)
T PF06786_consen 5 CELIRELYAQIGSGDQGYIPDAIGCALKTLNDIAADEALPEDVREQAAFAAANLLIS 61 (66)
T ss_pred HHHHHHHHHHhcCCccccCcHHHHHHHHHHHHHHcccccCHHHHHHHHHHHHHHHHh
Confidence 34444455555666667889888888887763 4689999999988887654
No 413
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=40.73 E-value=2.4e+02 Score=24.47 Aligned_cols=105 Identities=20% Similarity=0.196 Sum_probs=0.0
Q ss_pred cchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhh
Q 004960 117 PDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAE 196 (721)
Q Consensus 117 ~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~ 196 (721)
++++..+.+.+-+........-..+|+.++...+-.+.++...+...+-.. .. -...+...-+.++.-++...
T Consensus 54 ~~Ile~l~~rI~~~s~~~~~~~idlL~~lv~~~p~~vle~~~~l~~~ld~l-~~-lp~~~a~~ll~Al~PLi~~s----- 126 (158)
T PF14676_consen 54 SEILEQLLNRIVTKSSSPSSQYIDLLSELVRKAPLTVLECSSKLKELLDYL-SF-LPGDVAIGLLRALLPLIKFS----- 126 (158)
T ss_dssp HHHHHHHHHHHHH--SS--HHHHHHHHHHHHH-HHHHS-S-HHHHGGGGGT-TT-S-HHHHHHHHHHHHHHHTT------
T ss_pred HHHHHHHHHHHHhcCccchhHHHHHHHHHHHHChHHHHHHHHHHHHHHHHH-Hh-CCHHHHHHHHHHHHHHHhcC-----
Q ss_pred HHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 004960 197 VVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDE 232 (721)
Q Consensus 197 ~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~ 232 (721)
..+-..++-.+++.+-..+.+.|..|...+.+
T Consensus 127 ----~~lrd~lilvLRKamf~r~~~~R~~Av~Gfl~ 158 (158)
T PF14676_consen 127 ----PSLRDSLILVLRKAMFSRELDARQMAVNGFLQ 158 (158)
T ss_dssp ----HHHHHHHHHHHHHHTT-SSHHHHHHHHHHHH-
T ss_pred ----HHHHHHHHHHHHHHHccccHHHHHHHHHHhcC
No 414
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=39.32 E-value=2.1e+02 Score=23.28 Aligned_cols=60 Identities=12% Similarity=0.216 Sum_probs=38.1
Q ss_pred HhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhh
Q 004960 384 LGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGE 452 (721)
Q Consensus 384 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~ 452 (721)
++.|+.....++....+++...- +...++..+.+.+....+.-+...+..+..++..+..
T Consensus 6 L~~L~~s~~~I~~lt~~~~~~~~---------~a~~Iv~~i~~~~~~~~~~~kL~~LYlindIl~n~~~ 65 (121)
T smart00582 6 LESLNNSQESIQTLTKWAIEHAS---------HAKEIVELWEKYIKKAPPPRKLPLLYLLDSIVQNSKR 65 (121)
T ss_pred HHhccccHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHhCCccceehhHHhHHHHHHHHhh
Confidence 34445556677777777765432 2335666666666655555666778888888887754
No 415
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=38.55 E-value=5e+02 Score=27.37 Aligned_cols=42 Identities=12% Similarity=0.088 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHH
Q 004960 172 TSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQ 213 (721)
Q Consensus 172 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~ 213 (721)
.++.+...|++||.+++-..+.....-.-..+.+.+++.+..
T Consensus 44 ~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~ 85 (446)
T PF10165_consen 44 PDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKN 85 (446)
T ss_pred CChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHc
Confidence 688999999999999876543321111113455666665443
No 416
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=37.88 E-value=5.1e+02 Score=27.34 Aligned_cols=193 Identities=14% Similarity=0.247 Sum_probs=96.3
Q ss_pred CcHHHHHHHHhcCCChhHHHHHHHHHHHhh-------------hhhhcCCCHH-HHHHHHHHHHHHHhh--c-CCHHHHH
Q 004960 35 QVVPALVQHLRTAKTPNVRQLAAVLLRKKI-------------TGHWAKLSPQ-LKQLVKQSLIESITL--E-HSAPVRR 97 (721)
Q Consensus 35 ~~~~~l~~il~~~~~~~vr~~a~~~l~~~i-------------~~~w~~~~~~-~~~~i~~~ll~~l~~--e-~~~~vr~ 97 (721)
+.+..+.+++.-+.....+..|+-+|.+.= ...+..+|+. ........++..=.. | -.+..-+
T Consensus 97 evir~ltqvis~sg~iglQsn~~wlLGhLhls~~ss~~srtsvP~d~sYLpE~S~iRaai~f~i~~GkkGpe~vpp~lvk 176 (589)
T PF11229_consen 97 EVIRTLTQVISFSGVIGLQSNAAWLLGHLHLSTLSSSQSRTSVPTDFSYLPESSFIRAAIDFLIEAGKKGPESVPPSLVK 176 (589)
T ss_pred HHHHHHHHHHcCccccccccchHHHHHHHHHhhcccccCCCCCCCccccCcchhHHHHHHHHHHHccccCCccCCHHHHH
Confidence 456677777765556677777776666552 1123334442 111222233332222 1 1233333
Q ss_pred HHHHHHHHHH-ccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccccHHH-HHHHHHHhhCCCCCHH
Q 004960 98 ASANVVSIIA-KYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFAD-MQALLLKCLQDETSNR 175 (721)
Q Consensus 98 ~~~~~l~~i~-~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~-l~~~l~~~l~~~~~~~ 175 (721)
.+..-++.+. ++.+|.-.|..++..+.++= -+.+.++.++.....=+...... ...+.. +.|.+...+ +..
T Consensus 177 vvl~~ia~vgeS~qyPPVNWaalLsPLMRln--fGeEvq~lCLeiAvtQaqSSqsA-a~fLg~WlsPpli~sL----s~~ 249 (589)
T PF11229_consen 177 VVLKPIATVGESYQYPPVNWAALLSPLMRLN--FGEEVQQLCLEIAVTQAQSSQSA-AMFLGSWLSPPLIHSL----SVN 249 (589)
T ss_pred HHHHHhhhcCCCCCCCCccHHHHhhHHHhcc--ccHHHHHHHHHHHHHhccccccH-HHHHHhhcCcchhhhh----hHH
Confidence 3344444442 35566679999999998872 24455555554433222211100 001111 123333333 336
Q ss_pred HHHHHHHHHHHhhhhcCChhhHHHHHhhHHHH-HHHHHHHhhcCCHHHHHHHHHHHHHHhcCcc
Q 004960 176 VRIAALKAIGSFLEFTNDGAEVVKFREFIPSI-LNVSRQCLASGEEDVAVIAFEIFDELIESPA 238 (721)
Q Consensus 176 vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l-l~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~ 238 (721)
.|..-+..+..++...++.. .+.++..+ ++.+...-...+++....+++.+..-++..+
T Consensus 250 tk~~L~~Sl~~wmkhVsedq----iQ~Fve~l~vq~F~~~~~~~~~~lC~saLqGLsqAMKlP~ 309 (589)
T PF11229_consen 250 TKKYLFESLSLWMKHVSEDQ----IQAFVENLMVQQFKAASRPSNPELCQSALQGLSQAMKLPS 309 (589)
T ss_pred HHHHHHHHHHHHHhhCCHHH----HHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhcCCC
Confidence 77777777777777664321 23344422 2322222223567888888888888666543
No 417
>PRK04964 hypothetical protein; Provisional
Probab=37.66 E-value=1.4e+02 Score=20.69 Aligned_cols=51 Identities=18% Similarity=0.226 Sum_probs=37.1
Q ss_pred HHHHHHHHHHccccccchHHHHHHHHHhcccC------CChhHHHHHHHHHHHHHHH
Q 004960 649 TQALGLFALHTKSSYAPFLEESLKILVRHASY------FHEDVRYQAVFALKNILTA 699 (721)
Q Consensus 649 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~vr~~a~~~l~~l~~~ 699 (721)
++.+..+-...|+.=.-|+++-+...++.+++ ..++||+.|+-+-..|+-+
T Consensus 5 CelvR~~ya~IgSGd~gYiP~Ai~ca~k~L~~IAad~~Lp~~vRe~AAfAAANLliS 61 (66)
T PRK04964 5 CELVRKRYAEIGSGDLGYVPDALGCVLKALNEIAADEALPESVREKAAYAAANLLVS 61 (66)
T ss_pred HHHHHHHHHHhcCCccccCcHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhh
Confidence 34444455556666667899888888887763 4689999999988887654
No 418
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=37.17 E-value=1.7e+02 Score=26.28 Aligned_cols=19 Identities=16% Similarity=0.205 Sum_probs=8.3
Q ss_pred CHHHHHHHHHHHHHHHhhc
Q 004960 72 SPQLKQLVKQSLIESITLE 90 (721)
Q Consensus 72 ~~~~~~~i~~~ll~~l~~e 90 (721)
+++........|+|+|.-|
T Consensus 105 ~d~~l~~yLpQLVQaLr~e 123 (184)
T PF00613_consen 105 SDEELLFYLPQLVQALRYE 123 (184)
T ss_dssp -HHHHHHHHHHHHHHGGGS
T ss_pred CchHHHHHHHHHHHHheec
Confidence 4444444444455555443
No 419
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=36.92 E-value=5.7e+02 Score=27.61 Aligned_cols=113 Identities=12% Similarity=0.212 Sum_probs=77.7
Q ss_pred HHhHHHHHH-HHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhh
Q 004960 373 KEKLESVLH-IVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMG 451 (721)
Q Consensus 373 ~~~l~~i~~-~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~ 451 (721)
...+.+++. .++....|-++.+|..+...++..+...|..+.+. ..+...-=.|.|.+..||....+.+..++..-+
T Consensus 269 ~d~i~dicdsvfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~--~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p 346 (740)
T COG5537 269 RDEIKDICDSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKI--LGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIP 346 (740)
T ss_pred HHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhh--hcccccccccccchHHHHHHHHHHHHHHHhcCC
Confidence 344555554 56777889999999999999998887776544332 133333445677778899998888888887653
Q ss_pred --hccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHH
Q 004960 452 --EEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSV 487 (721)
Q Consensus 452 --~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l 487 (721)
..+..+++.....++........-||..++..+..+
T Consensus 347 ~~d~ir~f~eRFk~rILE~~r~D~d~VRi~sik~l~~l 384 (740)
T COG5537 347 HTDAIRRFVERFKDRILEFLRTDSDCVRICSIKSLCYL 384 (740)
T ss_pred cchHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHH
Confidence 345577777888888877665434777766655443
No 420
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=36.31 E-value=3.8e+02 Score=25.40 Aligned_cols=41 Identities=17% Similarity=0.289 Sum_probs=26.3
Q ss_pred HHHHHhhcCC--ChhHHHHHHHHHHHHHHHhh---hcchhhHHHHH
Q 004960 463 GKLLAALENS--PRNLQETCMSAIGSVAAAAE---QAFIPYAERVL 503 (721)
Q Consensus 463 ~~l~~~l~~~--~~~v~~~~l~~l~~l~~~~~---~~~~~~~~~i~ 503 (721)
+.|.+.+.++ +..+|..++.++..++..-+ +....|+..++
T Consensus 114 ~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll 159 (249)
T PF06685_consen 114 EPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELL 159 (249)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 3455556666 47789999999998887644 33334444444
No 421
>PHA01351 putative minor structural protein
Probab=36.00 E-value=6.2e+02 Score=27.74 Aligned_cols=8 Identities=13% Similarity=0.214 Sum_probs=2.9
Q ss_pred hcchhhHH
Q 004960 493 QAFIPYAE 500 (721)
Q Consensus 493 ~~~~~~~~ 500 (721)
.+|..+..
T Consensus 133 n~~~q~~~ 140 (1070)
T PHA01351 133 NDFAQIIS 140 (1070)
T ss_pred HHHHHHHH
Confidence 33333333
No 422
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=35.33 E-value=89 Score=25.73 Aligned_cols=53 Identities=17% Similarity=0.201 Sum_probs=37.8
Q ss_pred HHHHHHccccCCCCCcchHHHHHHhccCC--cHHHHHHHHHHHHHhhhhhhhccc
Q 004960 102 VVSIIAKYAVPAGEWPDLLPFLFQFSQSE--QEEHREVALILFSSLTETIGQTFR 154 (721)
Q Consensus 102 ~l~~i~~~~~~~~~~~~ll~~l~~~l~~~--~~~~~~~al~~l~~i~~~~~~~~~ 154 (721)
.+..|++..+....++.++..|...+.+. +|....-|+..+..++...++.+.
T Consensus 21 ~m~eIa~~t~~~~~~~~Im~~l~kRL~~~~k~WR~vyKaL~lleyLl~nGse~vv 75 (123)
T cd03571 21 LMAEIARATYNYVEFQEIMSMLWKRLNDKGKNWRHVYKALTLLEYLLKNGSERVV 75 (123)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhCCHHHH
Confidence 34555543333246888999999999766 777778899999998877765443
No 423
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=34.66 E-value=5.9e+02 Score=27.09 Aligned_cols=75 Identities=9% Similarity=0.164 Sum_probs=48.3
Q ss_pred CcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhcCCCH--HHHHHHHHHHHHHHh---hcCCHHHHHHHHHHHHHHHcc
Q 004960 35 QVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSP--QLKQLVKQSLIESIT---LEHSAPVRRASANVVSIIAKY 109 (721)
Q Consensus 35 ~~~~~l~~il~~~~~~~vr~~a~~~l~~~i~~~w~~~~~--~~~~~i~~~ll~~l~---~e~~~~vr~~~~~~l~~i~~~ 109 (721)
+=+..+.+-++. +++..+..+...|+-.++..-.+... .-..+++.+-+..+. +=.++.-++.+|++++.++..
T Consensus 47 ~dLellVeriqd-~d~~l~~~sLn~LkeviksStSsmtavpkplkfLrp~y~dl~~iydkw~~~n~K~~LaDilS~l~m~ 125 (881)
T COG5110 47 GDLELLVERIQD-PDIDLQNNSLNMLKEVIKSSTSSMTAVPKPLKFLRPNYLDLLEIYDKWLEGNKKRWLADILSALCMV 125 (881)
T ss_pred ccHHHHHHHhhC-CChHHHHHHHHHHHHHHhccccccccCCchhhhcCCCcchHHHHHhhccCcchhhHHHHHHHHHeee
Confidence 446777777754 57889999999999998765443221 123345544333332 224566778999999998764
Q ss_pred c
Q 004960 110 A 110 (721)
Q Consensus 110 ~ 110 (721)
.
T Consensus 126 y 126 (881)
T COG5110 126 Y 126 (881)
T ss_pred c
Confidence 4
No 424
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=34.44 E-value=7e+02 Score=27.91 Aligned_cols=51 Identities=12% Similarity=0.091 Sum_probs=34.4
Q ss_pred HhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcccchhhhHHHHHHH
Q 004960 201 REFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHF 251 (721)
Q Consensus 201 ~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~ 251 (721)
..++-.++++|.....+.-+.++..++..+-.+....|.--...+..+++.
T Consensus 299 K~ly~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~~LL~~lVNK 349 (988)
T KOG2038|consen 299 KILYFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQENNLLVLLVNK 349 (988)
T ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHh
Confidence 445556666666666666778899999999888877765444444444443
No 425
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=32.75 E-value=3.1e+02 Score=23.23 Aligned_cols=78 Identities=27% Similarity=0.453 Sum_probs=52.0
Q ss_pred HHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhc---cccchH
Q 004960 383 VLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEE---ILPFLD 459 (721)
Q Consensus 383 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~---~~~~~~ 459 (721)
+++.|+-....++++|..+|.. .+.-+++.+.+++.+.+++-..|.+....+..+++.+... -.+|..
T Consensus 13 ~L~~L~aS~qSi~kaa~fAlk~---------~~~~edL~~cIle~le~~~lN~R~nI~~fID~l~e~~~~~~~~~~~Yv~ 83 (139)
T PF12243_consen 13 LLRRLNASQQSIQKAAQFALKN---------RDMEEDLWSCILEQLEKENLNTRINIFYFIDSLCESSQKSKKYNYPYVS 83 (139)
T ss_pred HHHHcchhHHHHHHHHHHHHHc---------cccHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHhcccccchhHH
Confidence 4445555555666666666654 1233578888888889888888999999999998877432 346666
Q ss_pred HHHHHHHHhh
Q 004960 460 PLMGKLLAAL 469 (721)
Q Consensus 460 ~i~~~l~~~l 469 (721)
.+-..|.+++
T Consensus 84 ~l~~dL~~Iv 93 (139)
T PF12243_consen 84 MLQRDLPRIV 93 (139)
T ss_pred HHHHHHHHHH
Confidence 5554444443
No 426
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=32.71 E-value=4.5e+02 Score=25.17 Aligned_cols=100 Identities=16% Similarity=0.185 Sum_probs=66.2
Q ss_pred CCChhhHhHHHHHHHHHhhcc--HHHHHHhHH-HHHHHHHhhcCCC---CHhHHHHHHHHHHHHHhhhhHHH-H-Hhhhh
Q 004960 348 NASPKYREAAVTAIGIISEGC--AEWMKEKLE-SVLHIVLGALRDP---EQFVRGAASFALGQFAEYLQPEI-V-SHYES 419 (721)
Q Consensus 348 ~~~~~~r~~al~~l~~i~~~~--~~~~~~~l~-~i~~~l~~~l~d~---~~~vr~~a~~~l~~l~~~~~~~~-~-~~~~~ 419 (721)
+.....+--+++++.++.... ...+..+.. .++..+....... +..+|.+++..+-+++......- . +.-..
T Consensus 121 ~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ 200 (268)
T PF08324_consen 121 SSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSE 200 (268)
T ss_dssp TSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHH
T ss_pred CCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 345667777888888887653 234444444 5666666555554 89999999999999887653321 1 12234
Q ss_pred HHHHHHHhccC--CChHHHHHHHHHHHHHH
Q 004960 420 VLPCILNALED--ESDEVKEKSYYALAAFC 447 (721)
Q Consensus 420 ~l~~l~~~l~~--~~~~v~~~a~~al~~l~ 447 (721)
++..+.+.+.. .++++..+++-|+++++
T Consensus 201 ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~ 230 (268)
T PF08324_consen 201 LLSSIIEVLSREESDEEALYRLLVALGTLL 230 (268)
T ss_dssp HHHHHHHHCHCCHTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHHHHHh
Confidence 66666664432 46788899999999998
No 427
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=32.53 E-value=2.7e+02 Score=22.59 Aligned_cols=37 Identities=14% Similarity=0.236 Sum_probs=25.3
Q ss_pred cHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCC
Q 004960 156 HFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTND 193 (721)
Q Consensus 156 ~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~ 193 (721)
+...++..+.+.+.. ..+.-|...+..+..++.....
T Consensus 29 ~a~~Iv~~i~~~~~~-~~~~~kL~~LYlindIl~n~~~ 65 (121)
T smart00582 29 HAKEIVELWEKYIKK-APPPRKLPLLYLLDSIVQNSKR 65 (121)
T ss_pred HHHHHHHHHHHHHHh-CCccceehhHHhHHHHHHHHhh
Confidence 345677777777766 5556777778888887776543
No 428
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=32.26 E-value=2.2e+02 Score=25.01 Aligned_cols=77 Identities=16% Similarity=0.154 Sum_probs=41.6
Q ss_pred cchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhh
Q 004960 117 PDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAE 196 (721)
Q Consensus 117 ~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~ 196 (721)
|..+|.++....=.++.....+...+..... ....+.+.++.... .++.||..|+++|...-. +
T Consensus 45 p~aL~~~L~sv~W~~~~e~~e~~~lL~~W~~-------i~~~~aLeLL~~~f---~~~~VR~yAV~~L~~~sd-----~- 108 (166)
T cd00870 45 KKALTKFLKSVNWSDEQEVKQALELMPKWAK-------IDIEDALELLSPYF---TNPVVRKYAVSRLKLASD-----E- 108 (166)
T ss_pred cHHHHHHhhhCCCCCHHHHHHHHHHHhcCCC-------CCHHHHHHHcCccC---CCHHHHHHHHHHHHhCCH-----H-
Confidence 4455555554432333333344444444421 12233444333222 468899999999876322 1
Q ss_pred HHHHHhhHHHHHHHH
Q 004960 197 VVKFREFIPSILNVS 211 (721)
Q Consensus 197 ~~~~~~~l~~ll~~l 211 (721)
.+..++|++++.+
T Consensus 109 --eL~~yL~QLVQaL 121 (166)
T cd00870 109 --ELLLYLLQLVQAL 121 (166)
T ss_pred --HHHHHHHHHHHHH
Confidence 2567899999855
No 429
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=32.25 E-value=3.1e+02 Score=23.07 Aligned_cols=68 Identities=13% Similarity=0.112 Sum_probs=44.1
Q ss_pred HHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhh--hhHHHHHHHhccCCChHHHHHHHHHHHHHH
Q 004960 378 SVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY--ESVLPCILNALEDESDEVKEKSYYALAAFC 447 (721)
Q Consensus 378 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~~l~~l~~~l~~~~~~v~~~a~~al~~l~ 447 (721)
+++..++..+..++..+..-+.-.|.++|-.-.. .+++ ..-+|.++..+.++...+...++.++.-+.
T Consensus 58 ~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n--~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~ 127 (173)
T KOG4646|consen 58 DVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTN--AKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLE 127 (173)
T ss_pred hHHHHHHHHhhcccHHHHHHhHHHHHhhccChHH--HHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhc
Confidence 5678889999999988877665555554433211 2232 344677777788887666666776666554
No 430
>PF10441 Urb2: Urb2/Npa2 family; InterPro: IPR018849 This entry represents a conserved domain found towards the C terminus of proteins involved in ribosome biogenesis, such as the Urb2 protein from yeast [].
Probab=31.67 E-value=4.3e+02 Score=24.56 Aligned_cols=40 Identities=15% Similarity=0.097 Sum_probs=22.3
Q ss_pred CCHhHHHHHHHHHHHHHhhhhHHHHHhhh---hHHHHHHHhcc
Q 004960 390 PEQFVRGAASFALGQFAEYLQPEIVSHYE---SVLPCILNALE 429 (721)
Q Consensus 390 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~---~~l~~l~~~l~ 429 (721)
..+.+-...+..++.+...-...+...++ .++..++..+.
T Consensus 50 ~~~~if~~~~~ll~~il~~hr~~l~~r~hll~~~l~~LL~~l~ 92 (223)
T PF10441_consen 50 SSPSIFISLCRLLSSILRHHRFKLSGRFHLLLSVLQRLLRCLF 92 (223)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHcCCChHHHHHHHHHHHHHH
Confidence 35566667777777777665555444333 33344444444
No 431
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=30.90 E-value=88 Score=25.80 Aligned_cols=54 Identities=17% Similarity=0.237 Sum_probs=37.8
Q ss_pred HHHHHHHccccCCCCCcchHHHHHHhc---cCCcHHHHHHHHHHHHHhhhhhhhccc
Q 004960 101 NVVSIIAKYAVPAGEWPDLLPFLFQFS---QSEQEEHREVALILFSSLTETIGQTFR 154 (721)
Q Consensus 101 ~~l~~i~~~~~~~~~~~~ll~~l~~~l---~~~~~~~~~~al~~l~~i~~~~~~~~~ 154 (721)
..+..|++..+....++.++..|...+ +..+|....-|+.++..++...++.+.
T Consensus 22 ~~l~eIa~~t~~~~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~ 78 (125)
T PF01417_consen 22 KLLAEIAQLTYNSKDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFV 78 (125)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHH
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHH
Confidence 344555554333235778899999998 566788888999999999987765443
No 432
>PF08620 RPAP1_C: RPAP1-like, C-terminal; InterPro: IPR013929 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans.
Probab=30.76 E-value=1e+02 Score=22.52 Aligned_cols=31 Identities=23% Similarity=0.271 Sum_probs=27.6
Q ss_pred hHHHHHHhccCCcHHHHHHHHHHHHHhhhhh
Q 004960 119 LLPFLFQFSQSEQEEHREVALILFSSLTETI 149 (721)
Q Consensus 119 ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~ 149 (721)
-++.+..+..|..+..|..|+.+|+.|+...
T Consensus 40 Ti~El~~L~RSsv~~QR~~al~~L~~Il~~~ 70 (73)
T PF08620_consen 40 TIQELFHLSRSSVPSQRCIALQTLGRILYRA 70 (73)
T ss_pred CHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 3889999999999999999999999998654
No 433
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=30.62 E-value=7.5e+02 Score=27.06 Aligned_cols=196 Identities=8% Similarity=-0.008 Sum_probs=0.0
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHHcCccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHh
Q 004960 306 EAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLG 385 (721)
Q Consensus 306 ~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~ 385 (721)
++++-.+...+.....+|....+. ...-+..+...+.......+...-..-...+..+....+..-.. ...++..+++
T Consensus 3 ~~~~~s~~~~~~~V~~AL~~~~~G-d~~~Y~~L~~~l~~~~~~~d~~~~~~l~~~L~~L~~~Vs~Ld~~-~~~LV~ail~ 80 (563)
T PF05327_consen 3 NDVEFSDEMYKSFVRSALESHEKG-DSSQYDELVEQLSDPSESKDAISVSQLIRWLKALSSCVSLLDSS-CKQLVEAILS 80 (563)
T ss_dssp ------HHHHHHHHHHHHHHHHTT---HHHHHHHHHHHS-TT-TTS--HHHHHHHHHHHHHGGGGG-SC-CHHHHHHHHT
T ss_pred chhhhCHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHcccccCcccccHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHc
Q ss_pred hcC-CCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHH--------------HHHHHHHHHHhh
Q 004960 386 ALR-DPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEK--------------SYYALAAFCEDM 450 (721)
Q Consensus 386 ~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~--------------a~~al~~l~~~~ 450 (721)
.-- ..++.++.+-...++.++...+ .|++.++..+++.+..+....... +..+|..+++..
T Consensus 81 ~~W~~~~~~~v~~y~~Fl~~Lvsa~~----~yl~~vl~~LV~~f~p~~~~~~~~~~~~~~~~~~~~~~vH~~L~~Il~lv 156 (563)
T PF05327_consen 81 LNWLGRDEDFVEAYIQFLINLVSAQP----KYLSPVLSMLVKNFIPPPSSIAEWPGCPPEKRREIYERVHDALQKILRLV 156 (563)
T ss_dssp -TGGGS-HHHHHHHHHHHHHHHHH-G----GGHHHHHHHHHHGGGS-HHHHHH---------------HHHHHHHHHHH-
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHhccCCCccccccchhhhhhhhhhHHHHHHHHHHHHHHc
Q ss_pred hhccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHH
Q 004960 451 GEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIF 509 (721)
Q Consensus 451 ~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~~l~~~ 509 (721)
+.......+.+...+=.. ..+......-+..+-.+..-.+.--...+..++..+.++
T Consensus 157 P~s~~~L~~~l~~~FP~~--~~~~~~~~~Yv~NlL~l~~Y~P~L~~~Il~lIi~rLi~i 213 (563)
T PF05327_consen 157 PTSPSFLIPILVQNFPHK--RKSKDEHVNYVRNLLRLTEYCPELRSDILSLIIERLIKI 213 (563)
T ss_dssp GGGHHHHHHHHHHTS--T--TS-HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCcCC--CCChHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHH
No 434
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=29.83 E-value=3.4e+02 Score=25.00 Aligned_cols=88 Identities=16% Similarity=0.113 Sum_probs=56.5
Q ss_pred CCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCC
Q 004960 91 HSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQD 170 (721)
Q Consensus 91 ~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~l~~ 170 (721)
.++.+...++.-+.. . ..|+++++......++.+.-.+.++..+.-...+.. ....++++++...++|
T Consensus 98 nnW~vvD~la~~~V~-----~--~~~~~li~~~~a~~~~~~~w~rraaiv~~l~~~k~~-----~~~~~if~i~E~~l~d 165 (222)
T COG4912 98 NNWAVVDTLANHFVG-----I--PLWPDLIEEWAADAEEDNRWERRAAIVHQLVYKKKT-----LDLLEIFEIIELLLGD 165 (222)
T ss_pred ccHHHHHHHHHHhhc-----c--ccCHHHHHHHHhccccchHHHHHHHHHHHHHHhcCc-----cchhHHHHHHHHHccC
Confidence 456665555444332 2 379999999976666655444444433332222211 2345789999999998
Q ss_pred CCCHHHHHHHHHHHHHhhhhc
Q 004960 171 ETSNRVRIAALKAIGSFLEFT 191 (721)
Q Consensus 171 ~~~~~vr~~a~~~l~~l~~~~ 191 (721)
...-|+.+.-++|..+..+.
T Consensus 166 -~e~fV~KAigWaLrq~~k~~ 185 (222)
T COG4912 166 -KEFFVQKAIGWALRQIGKHS 185 (222)
T ss_pred -hHHHHHHHHHHHHHHHHhhc
Confidence 88889999999998887743
No 435
>PF08158 NUC130_3NT: NUC130/3NT domain; InterPro: IPR012977 This N-terminal domain is found in a novel nucleolar protein family defined by NUC130/133 [].
Probab=29.45 E-value=59 Score=21.86 Aligned_cols=41 Identities=24% Similarity=0.272 Sum_probs=28.2
Q ss_pred HHHccccccchHHHHHHHHHhcccCCChhHHHHHHHHHHHH
Q 004960 656 ALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNI 696 (721)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l 696 (721)
+.+.++....|-+++.+.|..--.-.++++|..-+++|--+
T Consensus 6 a~cYp~~~~~Fp~~L~~lL~~~~~~L~p~lR~~lv~aLiLL 46 (52)
T PF08158_consen 6 AHCYPKETKDFPQELIDLLRNHHTVLDPDLRMKLVKALILL 46 (52)
T ss_pred ccccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHH
Confidence 44455555566666666666655557899999999888655
No 436
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=29.21 E-value=4.5e+02 Score=24.09 Aligned_cols=155 Identities=20% Similarity=0.175 Sum_probs=96.0
Q ss_pred CChHHHHHHHHHHHHHhcC-CCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHHHHHHhhcCCH
Q 004960 15 PDNDARRQAEDQIKRLAKD-PQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEHSA 93 (721)
Q Consensus 15 ~d~~~r~~A~~~L~~~~~~-p~~~~~l~~il~~~~~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i~~~ll~~l~~e~~~ 93 (721)
+.++.|+-|...+...... .+....+.+-+-++.--+.|..|+.++....+ ..+++..+.+.. .+..-.++
T Consensus 24 ~~P~~R~lak~~~~~~~~~~~~~~~~l~~~Lw~~~~~E~r~~al~~l~~~~~----~~~~~~~~~~~~----~l~~~~~W 95 (208)
T cd07064 24 KTPERRALSKPFLKESKLPDKEELWELVLELWQQPEREYQYVAIDLLRKYKK----FLTPEDLPLLEE----LITTKSWW 95 (208)
T ss_pred ChHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHh----cCCHHHHHHHHH----HHcCCchH
Confidence 4556677777666666553 35666666666655445788888877766432 345555444443 22323467
Q ss_pred HHHHHHHHHH-HHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCC
Q 004960 94 PVRRASANVV-SIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDET 172 (721)
Q Consensus 94 ~vr~~~~~~l-~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~l~~~~ 172 (721)
.+...+|.-+ +.+.. .-+.+.+.+.+...+++.=.|..|+.+.-...+. ...+.+..++...+.| +
T Consensus 96 d~vD~~~~~i~g~~~~------~~~~~~~~l~~W~~s~~~W~rR~ai~~~l~~~~~------~~~~~l~~~~~~~~~d-~ 162 (208)
T cd07064 96 DTVDSLAKVVGGILLA------DYPEFEPVMDEWSTDENFWLRRTAILHQLKYKEK------TDTDLLFEIILANLGS-K 162 (208)
T ss_pred HHHHHHHHHHhHHHHh------CChhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc------cCHHHHHHHHHHhCCC-h
Confidence 7666555443 33332 2344578888888888876676776543332221 2346667777778877 7
Q ss_pred CHHHHHHHHHHHHHhhhh
Q 004960 173 SNRVRIAALKAIGSFLEF 190 (721)
Q Consensus 173 ~~~vr~~a~~~l~~l~~~ 190 (721)
..-|+.+.-++|..+...
T Consensus 163 e~fI~KAiGW~LRe~~k~ 180 (208)
T cd07064 163 EFFIRKAIGWALREYSKT 180 (208)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 788999988998877765
No 437
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=28.51 E-value=1.3e+02 Score=28.11 Aligned_cols=80 Identities=18% Similarity=0.187 Sum_probs=52.2
Q ss_pred hHHHHHHHHhhhccCCCCCC--------CCCCcHHHHHHHHHHHHHHHcC--c--------cccHhHHHHHHhhhcC-CC
Q 004960 290 VIPILQVMCPLLAESNEAGE--------DDDLAPDRAAAEVIDTMALNLA--K--------HVFPPVFEFASVSCQN-AS 350 (721)
Q Consensus 290 ~~~il~~l~~~l~~~~~~~~--------~~~~~~~~~a~~~l~~l~~~~~--~--------~~~~~i~~~l~~~l~~-~~ 350 (721)
.-++++.++.|......+.. ..-.++++-|.+++..++-.-. + .-+..++..+.+.+.. .+
T Consensus 107 ~~PildGLLHWaVcpsa~A~Dpfp~~~~~~~lSPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~ 186 (257)
T PF12031_consen 107 ARPILDGLLHWAVCPSAEAQDPFPTAGPHSPLSPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMRED 186 (257)
T ss_pred HHHHHHHHHHHHhccchhccCCCCCCCCCCCCCHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccc
Confidence 34677777777654322211 1236889999999888874322 1 1134566667777654 57
Q ss_pred hhhHhHHHHHHHHHhhccH
Q 004960 351 PKYREAAVTAIGIISEGCA 369 (721)
Q Consensus 351 ~~~r~~al~~l~~i~~~~~ 369 (721)
...|+.|+..+.+++.+-.
T Consensus 187 ~v~REfAvvlL~~La~~~~ 205 (257)
T PF12031_consen 187 QVCREFAVVLLSNLAQGDE 205 (257)
T ss_pred hhHHHHHHHHHHHHhcccH
Confidence 8899999999999987643
No 438
>smart00755 Grip golgin-97, RanBP2alpha,Imh1p and p230/golgin-245.
Probab=28.16 E-value=1.5e+02 Score=19.37 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHccc
Q 004960 75 LKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYA 110 (721)
Q Consensus 75 ~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~ 110 (721)
..+++|+-+++.|.+ .+.. |..+..+++.+.+..
T Consensus 3 n~eYLKNVll~fl~~-~e~~-r~~ll~vi~tlL~fs 36 (46)
T smart00755 3 NFEYLKNVLLQFLTL-RESE-RETLLKVISTVLQLS 36 (46)
T ss_pred cHHHHHHHHHHHhcc-Ccch-HHHHHHHHHHHhCCC
Confidence 357889999999986 3444 888888888877643
No 439
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=27.82 E-value=3.1e+02 Score=24.54 Aligned_cols=78 Identities=17% Similarity=0.147 Sum_probs=42.8
Q ss_pred CcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChh
Q 004960 116 WPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGA 195 (721)
Q Consensus 116 ~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~ 195 (721)
.|..+|.++....=.++.....+...+..... ....+.+.++.... +++.||..|+++|.+.-.
T Consensus 42 ~p~aL~~~L~sv~W~~~~e~~e~~~ll~~W~~-------~~~~~aL~LL~~~~---~~~~Vr~yAV~~L~~~~d------ 105 (184)
T smart00145 42 NPKALPKFLLSVNWSDADEVAQALSLLKKWAP-------LDPEDALELLSPKF---PDPFVRAYAVERLESASD------ 105 (184)
T ss_pred ChHHHHHHHhcCCCCCHHHHHHHHHHHHcCCC-------CCHHHHHHHhCccC---CCHHHHHHHHHHHHhCCH------
Confidence 45566666554443344433344444444321 12234444443322 468999999998865322
Q ss_pred hHHHHHhhHHHHHHHH
Q 004960 196 EVVKFREFIPSILNVS 211 (721)
Q Consensus 196 ~~~~~~~~l~~ll~~l 211 (721)
..+..++|++++.+
T Consensus 106 --~~l~~yLpQLVQaL 119 (184)
T smart00145 106 --EELLLYLLQLVQAL 119 (184)
T ss_pred --HHHHHHHHHHHHHH
Confidence 12567899999965
No 440
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=27.58 E-value=3.1e+02 Score=23.61 Aligned_cols=77 Identities=18% Similarity=0.198 Sum_probs=43.0
Q ss_pred cchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhh
Q 004960 117 PDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAE 196 (721)
Q Consensus 117 ~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~ 196 (721)
|..+|.+.+.+.-.++.....+...+.....- ...+.+..+.... +++.||..|+++|.+.-.
T Consensus 38 p~~lp~~L~sv~w~~~~~~~e~~~lL~~W~~~-------~~~~aL~LL~~~~---~~~~vr~yAv~~L~~~~~------- 100 (152)
T cd00864 38 PKALPKLLKSVNWNDDEEVSELYQLLKWWAPL-------SPEDALELLSPKY---PDPVVRQYAVRVLESASD------- 100 (152)
T ss_pred hHHHHHHHHHccCCCHHHHHHHHHHHhcCCCC-------CHHHHHHHcCCcC---CCHHHHHHHHHHHHhCCH-------
Confidence 45666666666555555444444444443211 1223333332221 468999999999865322
Q ss_pred HHHHHhhHHHHHHHH
Q 004960 197 VVKFREFIPSILNVS 211 (721)
Q Consensus 197 ~~~~~~~l~~ll~~l 211 (721)
..+..++|++++.+
T Consensus 101 -~~l~~ylpQLVQaL 114 (152)
T cd00864 101 -DELLLYLPQLVQAL 114 (152)
T ss_pred -HHHHHHHHHHHHHH
Confidence 12567899999965
No 441
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=27.52 E-value=8.2e+02 Score=26.53 Aligned_cols=105 Identities=12% Similarity=0.045 Sum_probs=68.5
Q ss_pred hccCCcHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHH
Q 004960 126 FSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIP 205 (721)
Q Consensus 126 ~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~ 205 (721)
...+-++..|..+++.++..+...|+.+.... .+...-..|.| .+..||....+.+..++...+.... .+..+.
T Consensus 283 Ry~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~--~lry~GW~LSD-n~~~vRl~v~Kil~~L~s~~p~~d~---ir~f~e 356 (740)
T COG5537 283 RYIDVDDVIRVLCSMSLRDWIGLVPDYFRKIL--GLRYNGWSLSD-NHEGVRLLVSKILLFLCSRIPHTDA---IRRFVE 356 (740)
T ss_pred hccchhHHHHHHHHHHHHHHHhcchHHHHhhh--ccccccccccc-chHHHHHHHHHHHHHHHhcCCcchH---HHHHHH
Confidence 34455678888999999999887776543221 34445556777 8999999999999998887655432 333444
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHhcC
Q 004960 206 SILNVSRQCLASGEEDVAVIAFEIFDELIES 236 (721)
Q Consensus 206 ~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~ 236 (721)
.+...+.+...-+..-+|..+++.+..+...
T Consensus 357 RFk~rILE~~r~D~d~VRi~sik~l~~lr~l 387 (740)
T COG5537 357 RFKDRILEFLRTDSDCVRICSIKSLCYLRIL 387 (740)
T ss_pred HHHHHHHHHHhhccchhhHHHHHHHHHHHHh
Confidence 4433333333323333888888888877654
No 442
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=27.39 E-value=2e+02 Score=26.36 Aligned_cols=41 Identities=20% Similarity=0.274 Sum_probs=30.3
Q ss_pred CCChhhHHHHHHHHHHHHHHcccCcccch--hhhHHHHHhhcc
Q 004960 557 LEFSELREYTHGFFSNIAGVLEDGFAQYL--PLVVPLAFSSCN 597 (721)
Q Consensus 557 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~l--~~i~~~ll~~~~ 597 (721)
.+...+|-.+++.++.+++.-.++...|+ ..++|..++..+
T Consensus 157 ~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme 199 (315)
T COG5209 157 SKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIME 199 (315)
T ss_pred CccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHH
Confidence 34667888888999998887776666665 458888887654
No 443
>PF05997 Nop52: Nucleolar protein,Nop52; InterPro: IPR010301 Nop52 is believed to be involved in the generation of 28S rRNA [].; GO: 0006364 rRNA processing, 0030688 preribosome, small subunit precursor
Probab=27.10 E-value=5.1e+02 Score=23.99 Aligned_cols=118 Identities=15% Similarity=0.115 Sum_probs=68.4
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHhcCC-------C---cHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhcCCCHHHH
Q 004960 7 LLLIQFLMPDNDARRQAEDQIKRLAKDP-------Q---VVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLK 76 (721)
Q Consensus 7 ~ll~~~~s~d~~~r~~A~~~L~~~~~~p-------~---~~~~l~~il~~~~~~~vr~~a~~~l~~~i~~~w~~~~~~~~ 76 (721)
.+.+.+.|+|...|.+|-+.|..+.... + .+..|+..+--++.|-+++--+.-+-..+.... +++..
T Consensus 4 ~~~k~LAs~d~~~R~~al~~l~~~l~~~~~~~~~~~~~kLWKGLfy~mWmsDkpl~Q~~la~~la~l~~~~~---~~~~~ 80 (217)
T PF05997_consen 4 KFAKKLASNDKKTRDRALKSLRKWLSKRSQLLTELDMLKLWKGLFYCMWMSDKPLVQEELAEELASLIHSFP---SEKAA 80 (217)
T ss_pred HHHHHhhcCChhHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhc---ChHHH
Confidence 4667888999999999999998875422 1 245566666555666676666665555554321 11123
Q ss_pred HHHHHHHHHHHhhc--------CC---HHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhc
Q 004960 77 QLVKQSLIESITLE--------HS---APVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFS 127 (721)
Q Consensus 77 ~~i~~~ll~~l~~e--------~~---~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l 127 (721)
-.....++..+..| -| .-+|+.+.+.+..+....++......+...+.+..
T Consensus 81 ~~f~~~f~~tm~rEW~~ID~~R~DKf~~LvR~~~~~~~~~l~~~~w~~~~v~~~~~~l~~~~ 142 (217)
T PF05997_consen 81 LLFLKAFWETMRREWDGIDRLRMDKFLMLVRRFLRQSFRFLKKNGWDKELVEEFNEILSETP 142 (217)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcc
Confidence 33334444554433 12 24678888888877765443323344444444443
No 444
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=26.63 E-value=6.1e+02 Score=25.09 Aligned_cols=32 Identities=16% Similarity=0.192 Sum_probs=22.8
Q ss_pred cHHHHHHHHhcC---CChhHHHHHHHHHHHhhhhh
Q 004960 36 VVPALVQHLRTA---KTPNVRQLAAVLLRKKITGH 67 (721)
Q Consensus 36 ~~~~l~~il~~~---~~~~vr~~a~~~l~~~i~~~ 67 (721)
.+..|+.+..+. ....+|..|+..|+.++.++
T Consensus 35 vi~~LL~~~L~~~~~~~f~lR~AA~~c~kay~~~N 69 (312)
T PF04869_consen 35 VIDALLNLMLNENSVQPFDLRCAALYCFKAYFYNN 69 (312)
T ss_dssp HHHHHHHHHT-TT--S-HHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHHhcC
Confidence 567777776653 47889999999999888664
No 445
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=26.56 E-value=2.1e+02 Score=22.67 Aligned_cols=60 Identities=15% Similarity=0.117 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcc
Q 004960 177 RIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPA 238 (721)
Q Consensus 177 r~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~ 238 (721)
|...+..+++++...+...+..+-..-+|.+++.. .+.+.+|-.+.+|+.++..+.+..+
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c--~iD~~nP~irEwai~aiRnL~e~n~ 62 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCC--NIDDHNPFIREWAIFAIRNLCEGNP 62 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhc--CCCcccHHHHHHHHHHHHHHHhCCH
Confidence 44455666666654433333333334578888753 3456788999999999999887654
No 446
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=25.53 E-value=3.6e+02 Score=21.66 Aligned_cols=70 Identities=13% Similarity=0.351 Sum_probs=45.8
Q ss_pred cchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccccHHHH-HHHHHHhhCCCCCHHHHHHHHHHHHHh
Q 004960 117 PDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADM-QALLLKCLQDETSNRVRIAALKAIGSF 187 (721)
Q Consensus 117 ~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~l-~~~l~~~l~~~~~~~vr~~a~~~l~~l 187 (721)
+.++..+.+.+....+..+..++..+..+++.........+... .+.+...... .++.+|....+.+..+
T Consensus 36 ~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~~-~~~~~r~kl~rl~~iW 106 (114)
T cd03562 36 KEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDAYEK-VDEKTRKKLERLLNIW 106 (114)
T ss_pred HHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHc
Confidence 45666677777766778888999999999987654433333332 5555555655 6778887665555433
No 447
>cd00869 PI3Ka_II Phosphoinositide 3-kinase (PI3K) class II, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, class II PI3-kinases phosphorylate phosphoinositol (PtdIns), PtdIns(4)-phosphate, but not PtdIns(4,5)-bisphosphate. They are larger, having a C2 domain at the C-terminus.
Probab=24.94 E-value=4.8e+02 Score=22.99 Aligned_cols=11 Identities=18% Similarity=0.712 Sum_probs=5.0
Q ss_pred cCCCcHHHHHH
Q 004960 32 KDPQVVPALVQ 42 (721)
Q Consensus 32 ~~p~~~~~l~~ 42 (721)
++|..++.++.
T Consensus 36 ~~p~aLp~~L~ 46 (169)
T cd00869 36 NEPNALPLVLA 46 (169)
T ss_pred hCcHHHHHHHH
Confidence 34444444443
No 448
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=24.55 E-value=4.4e+02 Score=22.34 Aligned_cols=79 Identities=18% Similarity=0.257 Sum_probs=49.0
Q ss_pred HHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhh-c--chhhHH
Q 004960 424 ILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQ-A--FIPYAE 500 (721)
Q Consensus 424 l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~-~--~~~~~~ 500 (721)
+++.|.-....++..+..||.. . ..-+.+.+.+...+.+++-+.|..++..+..++..... . ..+|..
T Consensus 13 ~L~~L~aS~qSi~kaa~fAlk~--~-------~~~edL~~cIle~le~~~lN~R~nI~~fID~l~e~~~~~~~~~~~Yv~ 83 (139)
T PF12243_consen 13 LLRRLNASQQSIQKAAQFALKN--R-------DMEEDLWSCILEQLEKENLNTRINIFYFIDSLCESSQKSKKYNYPYVS 83 (139)
T ss_pred HHHHcchhHHHHHHHHHHHHHc--c-------ccHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHhcccccchhHH
Confidence 3444444444456666666654 2 23356777888888888888899999999888776542 2 345655
Q ss_pred HHHHHHHHHHh
Q 004960 501 RVLELLKIFMV 511 (721)
Q Consensus 501 ~i~~~l~~~l~ 511 (721)
.+-.-|..++.
T Consensus 84 ~l~~dL~~Iv~ 94 (139)
T PF12243_consen 84 MLQRDLPRIVD 94 (139)
T ss_pred HHHHHHHHHHH
Confidence 54444444443
No 449
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=24.29 E-value=1.2e+02 Score=24.68 Aligned_cols=33 Identities=24% Similarity=0.171 Sum_probs=27.8
Q ss_pred HHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhh
Q 004960 377 ESVLHIVLGALRDPEQFVRGAASFALGQFAEYL 409 (721)
Q Consensus 377 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 409 (721)
.-.++.++..|.|+++.|...|...|...+..-
T Consensus 7 ~w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~ 39 (115)
T PF14663_consen 7 DWGIELLVTQLYDPSPEVVAAALEILEEACEDK 39 (115)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhch
Confidence 356788899999999999999999988877663
No 450
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=24.02 E-value=1.6e+02 Score=26.41 Aligned_cols=78 Identities=19% Similarity=0.220 Sum_probs=45.9
Q ss_pred CCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCC-CCHHHHHHHHHHHHHhhhhcCC
Q 004960 115 EWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDE-TSNRVRIAALKAIGSFLEFTND 193 (721)
Q Consensus 115 ~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~vr~~a~~~l~~l~~~~~~ 193 (721)
..|..+|.+...+.-.++.....+...+.....- ..... +.+|... +++.||..|+.+|..+-.
T Consensus 42 ~~p~aL~~~L~sv~w~~~~~~~~~~~ll~~W~~~-------~p~~A----L~LL~~~f~~~~VR~yAv~~L~~~~d---- 106 (184)
T PF00613_consen 42 NNPEALPKLLRSVDWWNPEEVSEAYQLLLQWPPI-------SPEDA----LELLSPNFPDPFVRQYAVRRLESLSD---- 106 (184)
T ss_dssp TSGGGHHHHHTTSTTTSHHHHHHHHHHHHTSHCT-------THHHH----HHCTSTT---HHHHHHHHHHHCTS-H----
T ss_pred hCchHHHHHHhhCCCCchhhHHHHHHHHHcCCCC-------CHHHH----HHHHHhhccHHHHHHHHHHHHHHcCc----
Confidence 4577888888877655655555566555554321 11222 3344321 368899999999865221
Q ss_pred hhhHHHHHhhHHHHHHHH
Q 004960 194 GAEVVKFREFIPSILNVS 211 (721)
Q Consensus 194 ~~~~~~~~~~l~~ll~~l 211 (721)
..+..++|++++.+
T Consensus 107 ----~~l~~yLpQLVQaL 120 (184)
T PF00613_consen 107 ----EELLFYLPQLVQAL 120 (184)
T ss_dssp ----HHHHHHHHHHHHHG
T ss_pred ----hHHHHHHHHHHHHh
Confidence 22567899999854
No 451
>PF06628 Catalase-rel: Catalase-related immune-responsive; InterPro: IPR010582 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen, serving to protect cells from its toxic effects []. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. Most catalases are mono-functional, haem-containing enzymes, although there are also bifunctional haem-containing peroxidase/catalases (IPR000763 from INTERPRO) that are closely related to plant peroxidases, and non-haem, manganese-containing catalases (IPR007760 from INTERPRO) that are found in bacteria []. This entry represents a small conserved region within catalase enzymes that carries the immune-responsive amphipathic octa-peptide that is recognised by T cells [].; PDB: 2CAH_A 1NM0_A 1H7K_A 1E93_A 1H6N_A 3HB6_A 2CAG_A 1M85_A 1MQF_A 1A4E_C ....
Probab=23.89 E-value=2e+02 Score=20.66 Aligned_cols=40 Identities=5% Similarity=0.069 Sum_probs=27.6
Q ss_pred hhcCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 004960 67 HWAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSII 106 (721)
Q Consensus 67 ~w~~~~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i 106 (721)
.|..++++.++.+..++...|..-+++.|+......+..+
T Consensus 16 ly~~l~~~er~~lv~nia~~l~~v~~~~i~~r~l~~f~~v 55 (68)
T PF06628_consen 16 LYRVLSDEERERLVENIAGHLSGVSDEEIQERVLAYFYKV 55 (68)
T ss_dssp HHHHSSHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHccCChhhHHHHHHHHHHHh
Confidence 5667788888888888888887533343776666555544
No 452
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=23.64 E-value=7.2e+02 Score=24.58 Aligned_cols=108 Identities=8% Similarity=0.073 Sum_probs=57.5
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhh--hcchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhch
Q 004960 460 PLMGKLLAALENSPRNLQETCMSAIGSVAAAAE--QAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGR 537 (721)
Q Consensus 460 ~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~--~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~ 537 (721)
.++..|.+...++.+ +|..++..+-.++..++ +.+.+-+.++- +.+...+.+ .+-.+..+.++........
T Consensus 107 ~vLsnLfn~~d~~~~-aR~~Vy~~lv~la~~~~~~~~i~~~lk~~~----~~lkew~~~-vedqrel~r~v~~al~~~k- 179 (378)
T KOG2753|consen 107 QVLSNLFNGVDKPTP-ARYQVYMSLVTLAASCKLIEYIVPNLKQLD----DWLKEWNIS-VEDQRELLRAVHKALKDNK- 179 (378)
T ss_pred HHHHHHHhccCCCch-HHHHHHHHHHHHHhhcceeeeecccHHHHH----HHHHhCCCC-HHHHHHHHHHHHHHHHhcc-
Confidence 455555555555555 88888887777776654 33334344433 333322111 1111223333333332211
Q ss_pred hhccCChHHHHHHHHhccCCCC-hhhHHHHHHHHHHHHHH
Q 004960 538 ARMEPILPPFVEAAISGFGLEF-SELREYTHGFFSNIAGV 576 (721)
Q Consensus 538 ~~~~~~~~~i~~~l~~~l~~~~-~~~~~~~~~~l~~l~~~ 576 (721)
. .....++|..++.....++ ..-|+.++.|+...+..
T Consensus 180 -~-~~~s~kvmt~lLgtyt~dnas~AredA~rcV~~av~d 217 (378)
T KOG2753|consen 180 -S-VDESSKVMTELLGTYTEDNASEAREDAMRCVVEAVKD 217 (378)
T ss_pred -h-hhhHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHcC
Confidence 1 2334567777777776555 67888888888877653
No 453
>PF08158 NUC130_3NT: NUC130/3NT domain; InterPro: IPR012977 This N-terminal domain is found in a novel nucleolar protein family defined by NUC130/133 [].
Probab=22.79 E-value=2.1e+02 Score=19.32 Aligned_cols=43 Identities=14% Similarity=0.087 Sum_probs=26.0
Q ss_pred HHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHH
Q 004960 404 QFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAF 446 (721)
Q Consensus 404 ~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l 446 (721)
..+...+.....+-++++..|.+.-..-++++|...+.+|.-+
T Consensus 4 ~va~cYp~~~~~Fp~~L~~lL~~~~~~L~p~lR~~lv~aLiLL 46 (52)
T PF08158_consen 4 HVAHCYPKETKDFPQELIDLLRNHHTVLDPDLRMKLVKALILL 46 (52)
T ss_pred ccccccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHH
Confidence 3444555444445555666555544445688998888887644
No 454
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=22.63 E-value=1e+03 Score=26.05 Aligned_cols=174 Identities=13% Similarity=0.127 Sum_probs=86.0
Q ss_pred HHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHH-HhhhhHHHHHHHhcc--CCC--h---HHHHHHHHHHHHHHHh
Q 004960 378 SVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIV-SHYESVLPCILNALE--DES--D---EVKEKSYYALAAFCED 449 (721)
Q Consensus 378 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-~~~~~~l~~l~~~l~--~~~--~---~v~~~a~~al~~l~~~ 449 (721)
.++..++..=...+..+|..|+-++..++......+. +.+....-+.+.... ..+ + ..+..+...++-=...
T Consensus 282 ~liK~~V~vWstge~~~rv~Afl~l~~l~~~~~~~~l~~vlk~mY~afv~nsk~~~~~tl~~i~Fl~~slvEL~~ld~~~ 361 (661)
T KOG2256|consen 282 KLIKAVVHVWSTGEESLRVLAFLCLIDLCRKFKSTCLDPVLKTMYLAFVRNSKFVTVNTLPLINFLQNSLVELLGLDLQV 361 (661)
T ss_pred HHHHHHheeeccCCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCCcccchhHHHHHHHHHHhccCHHH
Confidence 3334344333455788999999999998887654322 233333333333321 111 1 1121111111100000
Q ss_pred hhhccccchHHHHHHHHHhhcCCChhHHH--------HHHHHHHHHHH-Hhh--hcchhhHHHHHHHHHHHHhccC-chh
Q 004960 450 MGEEILPFLDPLMGKLLAALENSPRNLQE--------TCMSAIGSVAA-AAE--QAFIPYAERVLELLKIFMVLTN-DED 517 (721)
Q Consensus 450 ~~~~~~~~~~~i~~~l~~~l~~~~~~v~~--------~~l~~l~~l~~-~~~--~~~~~~~~~i~~~l~~~l~~~~-~~~ 517 (721)
.-..---|+.++--.|-+.+...+.+-.. .++..+..++. ..+ ....|....+++.+...+.... ...
T Consensus 362 ~Yq~aF~yIrQLAihLRnam~~k~K~s~~~VYnWqfi~cL~lW~rvisf~~~~~s~lq~LvYpLvQvi~GvirLipT~qy 441 (661)
T KOG2256|consen 362 SYQHAFVYIRQLAIHLRNAMITKNKESVQSVYNWQYVHCLDLWLRVISFANGSASQLQPLVYPLVQVILGVIRLIPTPQY 441 (661)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccHhhhhhhhhHHHHHHHHHhhhcCcccc
Confidence 00112245666666677777665433221 22333333333 222 2233333334444444444332 233
Q ss_pred hhhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHh
Q 004960 518 LRSRARATELLGLVAESVGRARMEPILPPFVEAAIS 553 (721)
Q Consensus 518 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~ 553 (721)
.-+|-.|+..+..++.+.| .|.|..+.+++.+-.
T Consensus 442 ~PLRlhcir~Li~Ls~ssg--~fIPi~~ll~Eml~~ 475 (661)
T KOG2256|consen 442 YPLRLHCIRSLISLSRSSG--TFIPLSPLLVEMLKS 475 (661)
T ss_pred hhHHHHHHHHHHHHHhhcC--ceeecHHHHHHHHHH
Confidence 4578889999999987776 688887777776543
No 455
>KOG4346 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.61 E-value=6.7e+02 Score=27.64 Aligned_cols=113 Identities=19% Similarity=0.253 Sum_probs=64.9
Q ss_pred hHHHHHHHhcc-CCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHhhhcch
Q 004960 419 SVLPCILNALE-DESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENS-PRNLQETCMSAIGSVAAAAEQAFI 496 (721)
Q Consensus 419 ~~l~~l~~~l~-~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~-~~~v~~~~l~~l~~l~~~~~~~~~ 496 (721)
..+..+++.|. ..+.++.+.|+..+.+++...+.....+...+++.++.+=+.- -+...+.-..++..+.-..+..+.
T Consensus 508 aYV~Dl~emL~~~E~yE~~eaAL~nae~LI~r~pt~~rq~A~eLlq~lLhLqn~f~~~~F~etq~~aiVa~~vT~p~pca 587 (849)
T KOG4346|consen 508 AYVADLFEMLLEKEKYEVFEAALFNAENLINRRPTGFRQIAEELLQRLLHLQNNFGTPKFKETQVDAIVAACVTQPPPCA 587 (849)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhcCccchhhhhHHHHHHHHhcCCCcch
Confidence 33444444444 3457799999999999999888888888888888887654332 233333334445444444455555
Q ss_pred hhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhch
Q 004960 497 PYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGR 537 (721)
Q Consensus 497 ~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~ 537 (721)
||+-. ++......-..+-|.-.+.+++.-+..++.
T Consensus 588 pylcr------qf~a~n~~YS~rQRiliL~vi~lAA~els~ 622 (849)
T KOG4346|consen 588 PYLCR------QFIAPNQGYSIRQRILILSVIHLAADELSA 622 (849)
T ss_pred hHHHH------HhhcCCCcccHHHHHHHHHHHHHHHHHhCc
Confidence 54332 111111112223344455667776666654
No 456
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=22.18 E-value=1.1e+03 Score=26.07 Aligned_cols=79 Identities=19% Similarity=0.204 Sum_probs=52.9
Q ss_pred HHHHHHHcCccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHH
Q 004960 323 IDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFAL 402 (721)
Q Consensus 323 l~~l~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l 402 (721)
+-.++..+|.++. +..+...+.=.++..|.+.=.+++-+.-..|+. .++..+-+..+|.+..|-..+..++
T Consensus 629 liAMgeeig~eM~---lR~f~h~l~yge~~iRravPLal~llsvSNPq~------~vlDtLsk~shd~D~eva~naIfam 699 (878)
T KOG2005|consen 629 LIAMGEEIGSEMV---LRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQV------NVLDTLSKFSHDGDLEVAMNAIFAM 699 (878)
T ss_pred hhhhhhhhhhHHH---HHHHHHHHHcCCHHHHHHHHHHHhhhccCCCcc------hHHHHHHHhccCcchHHHHHHHHHh
Confidence 3444555554333 333333344456678888878888887665553 6677888888899999999999999
Q ss_pred HHHHhhhh
Q 004960 403 GQFAEYLQ 410 (721)
Q Consensus 403 ~~l~~~~~ 410 (721)
|-+.....
T Consensus 700 GLiGAGTn 707 (878)
T KOG2005|consen 700 GLIGAGTN 707 (878)
T ss_pred ccccCCcc
Confidence 88765543
No 457
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=22.13 E-value=9e+02 Score=25.12 Aligned_cols=64 Identities=14% Similarity=0.196 Sum_probs=37.0
Q ss_pred hcCCChhhHhHHHHHHHHHhhccHHHHH-HhHH-HHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhh
Q 004960 346 CQNASPKYREAAVTAIGIISEGCAEWMK-EKLE-SVLHIVLGALRDPEQFVRGAASFALGQFAEYL 409 (721)
Q Consensus 346 l~~~~~~~r~~al~~l~~i~~~~~~~~~-~~l~-~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 409 (721)
..-.++..-..+..++++++-+-..... ..++ .+-.-++.+-...+...|..||-++..++...
T Consensus 273 ~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat~K 338 (832)
T KOG3678|consen 273 CRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLATNK 338 (832)
T ss_pred cccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhhhh
Confidence 3444455544455567777654332222 2222 23345555555668889999999988887653
No 458
>PF10441 Urb2: Urb2/Npa2 family; InterPro: IPR018849 This entry represents a conserved domain found towards the C terminus of proteins involved in ribosome biogenesis, such as the Urb2 protein from yeast [].
Probab=22.11 E-value=6.4e+02 Score=23.39 Aligned_cols=73 Identities=7% Similarity=0.043 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhhhhccccc-hHHHHHHHHHhhcCC--------ChhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHH
Q 004960 438 KSYYALAAFCEDMGEEILPF-LDPLMGKLLAALENS--------PRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKI 508 (721)
Q Consensus 438 ~a~~al~~l~~~~~~~~~~~-~~~i~~~l~~~l~~~--------~~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~~l~~ 508 (721)
.++.++..++..-+-.+.+| ++.+++.+..+.... ..++=..++..++.+...-...+...++.+++.+..
T Consensus 7 ~~l~~l~~ll~~~~~~~sq~~ie~~l~~~~~~~~~~~~~~~~~~~~~if~~~~~ll~~il~~hr~~l~~r~hll~~~l~~ 86 (223)
T PF10441_consen 7 LILEILKQLLSSKPWLFSQYNIEQILSILSTLFSSLRNTLSADSSPSIFISLCRLLSSILRHHRFKLSGRFHLLLSVLQR 86 (223)
T ss_pred HHHHHHHHHHhcCchhccchhHHHHHHHHHHHHcccccccccchhHHHHHHHHHHHHHHHHHhHHHHcCCChHHHHHHHH
Confidence 34444444444443333333 344444444444321 233444556666666666666555555555555444
Q ss_pred HH
Q 004960 509 FM 510 (721)
Q Consensus 509 ~l 510 (721)
++
T Consensus 87 LL 88 (223)
T PF10441_consen 87 LL 88 (223)
T ss_pred HH
Confidence 43
No 459
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=21.33 E-value=5.8e+02 Score=22.59 Aligned_cols=59 Identities=15% Similarity=0.124 Sum_probs=42.2
Q ss_pred CCCHhHHHHHHHHHHHHHhhhhH-HHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHH
Q 004960 389 DPEQFVRGAASFALGQFAEYLQP-EIVSHYESVLPCILNALEDESDEVKEKSYYALAAFC 447 (721)
Q Consensus 389 d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~ 447 (721)
..+..+...++.|+..+...-.. ...-..+..+..+...+.+++..+|..++..|..+|
T Consensus 127 ~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 127 EEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 45677888889998887765321 111124788999999999999999999999888765
No 460
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=21.24 E-value=2e+02 Score=26.42 Aligned_cols=95 Identities=8% Similarity=0.137 Sum_probs=56.7
Q ss_pred hhHhHHHHHHHHHhhccHH---HHHHhHHH-HHHHHHhhc-CCCCHhHHHHHHHHHHHHHhhhhHHHHHhh--hhHHHHH
Q 004960 352 KYREAAVTAIGIISEGCAE---WMKEKLES-VLHIVLGAL-RDPEQFVRGAASFALGQFAEYLQPEIVSHY--ESVLPCI 424 (721)
Q Consensus 352 ~~r~~al~~l~~i~~~~~~---~~~~~l~~-i~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~~l~~l 424 (721)
..-..++..+..++..... ++..+++- +.|.+...- +.+....|..++-.+|.+...-.+.+.+++ ..++|.+
T Consensus 115 nRvcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLc 194 (315)
T COG5209 115 NRVCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLC 194 (315)
T ss_pred hHHHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHH
Confidence 3445567777777765321 11222222 122222221 245678999999999999988877777665 5788988
Q ss_pred HHhccCCChHHHHHHHHHHHHH
Q 004960 425 LNALEDESDEVKEKSYYALAAF 446 (721)
Q Consensus 425 ~~~l~~~~~~v~~~a~~al~~l 446 (721)
++.+...+.-.+.-|+..++.+
T Consensus 195 LrIme~gSElSktvaifI~qki 216 (315)
T COG5209 195 LRIMELGSELSKTVAIFIFQKI 216 (315)
T ss_pred HHHHHhhhHHHHHHHHHHHHHH
Confidence 8888776554444444444444
No 461
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=21.13 E-value=2.3e+02 Score=24.07 Aligned_cols=30 Identities=17% Similarity=0.131 Sum_probs=24.5
Q ss_pred HHHHHHHHhhcCCCCHhHHHHHHHHHHHHH
Q 004960 377 ESVLHIVLGALRDPEQFVRGAASFALGQFA 406 (721)
Q Consensus 377 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~ 406 (721)
+.+-..+..+|.++++.|+..|+.|+-.+-
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~k 45 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLTWK 45 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 455667778899999999999999987653
No 462
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=20.12 E-value=2.4e+02 Score=22.89 Aligned_cols=36 Identities=22% Similarity=0.349 Sum_probs=27.2
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHhcCCCcHHHH
Q 004960 5 LELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPAL 40 (721)
Q Consensus 5 l~~ll~~~~s~d~~~r~~A~~~L~~~~~~p~~~~~l 40 (721)
+.-++.++.++++++...|-+.|.++..++..+..+
T Consensus 10 i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~ 45 (115)
T PF14663_consen 10 IELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYL 45 (115)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHH
Confidence 455778888888899999999888888776444443
Done!