Query 004960
Match_columns 721
No_of_seqs 298 out of 2632
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 11:05:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004960.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004960hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fdd_A Transportin-1; heat rep 100.0 1.1E-59 3.9E-64 535.3 66.9 646 3-703 13-747 (852)
2 2bpt_A Importin beta-1 subunit 100.0 9.3E-55 3.2E-59 499.1 67.1 651 3-703 4-716 (861)
3 1qgr_A Protein (importin beta 100.0 2.3E-52 7.8E-57 480.2 61.3 653 4-704 2-728 (876)
4 1wa5_C Importin alpha RE-expor 100.0 5.9E-47 2E-51 434.3 54.3 680 3-697 5-790 (960)
5 2x19_B Importin-13; nuclear tr 100.0 1.5E-42 5.3E-47 400.7 56.5 654 3-705 24-809 (963)
6 2x1g_F Cadmus; transport prote 100.0 4.6E-43 1.6E-47 404.4 49.3 652 3-704 7-820 (971)
7 3m1i_C Exportin-1; heat repeat 100.0 7.1E-42 2.4E-46 395.4 58.9 678 2-719 15-899 (1049)
8 4hat_C Exportin-1; heat repeat 100.0 2.6E-39 8.9E-44 363.4 58.0 670 3-720 16-900 (1023)
9 2bpt_A Importin beta-1 subunit 100.0 3.7E-38 1.3E-42 361.4 57.5 648 7-704 99-818 (861)
10 1u6g_C TIP120 protein, CAND1; 100.0 3.8E-38 1.3E-42 372.6 50.8 635 3-700 6-723 (1230)
11 1ibr_B P95, importin beta-1 su 100.0 1.3E-39 4.3E-44 345.6 30.5 419 4-429 2-461 (462)
12 4fdd_A Transportin-1; heat rep 100.0 3E-36 1E-40 342.7 56.8 628 8-699 95-785 (852)
13 3gjx_A Exportin-1; transport, 100.0 5.6E-35 1.9E-39 325.6 57.4 670 3-720 28-924 (1073)
14 3ibv_A Exportin-T; karyopherin 100.0 1.3E-35 4.3E-40 333.9 47.1 615 2-677 5-788 (980)
15 1qgr_A Protein (importin beta 100.0 5.6E-34 1.9E-38 327.3 55.0 640 8-701 95-830 (876)
16 1u6g_C TIP120 protein, CAND1; 100.0 1E-34 3.6E-39 343.2 49.3 597 37-701 8-682 (1230)
17 1b3u_A Protein (protein phosph 100.0 3.9E-33 1.3E-37 305.4 47.2 570 37-696 12-585 (588)
18 1b3u_A Protein (protein phosph 100.0 3.4E-33 1.2E-37 305.8 44.5 535 80-699 12-549 (588)
19 3a6p_A Exportin-5; exportin-5, 100.0 1.6E-27 5.5E-32 275.8 46.5 500 1-511 9-681 (1204)
20 1ibr_B P95, importin beta-1 su 99.9 1.6E-20 5.3E-25 198.7 40.1 405 215-679 10-461 (462)
21 2x1g_F Cadmus; transport prote 99.9 6.7E-19 2.3E-23 203.1 53.6 642 4-699 86-859 (971)
22 2jdq_A Importin alpha-1 subuni 99.9 2E-20 6.8E-25 197.0 33.8 401 114-531 13-441 (450)
23 2x19_B Importin-13; nuclear tr 99.9 3E-18 1E-22 197.9 55.0 639 5-699 105-847 (963)
24 3now_A UNC-45 protein, SD10334 99.9 4.6E-17 1.6E-21 175.5 55.1 624 15-704 62-787 (810)
25 1wa5_C Importin alpha RE-expor 99.9 2.8E-17 9.5E-22 188.6 54.6 562 8-597 40-771 (960)
26 3now_A UNC-45 protein, SD10334 99.9 4.9E-17 1.7E-21 175.3 51.6 633 3-699 6-738 (810)
27 2jdq_A Importin alpha-1 subuni 99.9 1.8E-19 6.2E-24 189.7 32.0 392 81-488 23-442 (450)
28 2vgl_B AP-2 complex subunit be 99.9 6.2E-19 2.1E-23 190.2 36.7 470 5-532 51-531 (591)
29 1wa5_B Importin alpha subunit; 99.9 3.3E-19 1.1E-23 191.1 32.5 364 115-493 84-461 (530)
30 1wa5_B Importin alpha subunit; 99.9 5.4E-19 1.8E-23 189.4 32.5 392 80-489 89-510 (530)
31 4b8j_A Importin subunit alpha- 99.8 3.5E-18 1.2E-22 183.3 33.8 396 160-575 75-496 (528)
32 4b8j_A Importin subunit alpha- 99.8 9.9E-19 3.4E-23 187.5 29.4 362 118-493 74-447 (528)
33 2vgl_B AP-2 complex subunit be 99.8 2.1E-17 7E-22 178.4 37.1 507 3-573 13-530 (591)
34 3ibv_A Exportin-T; karyopherin 99.8 2.4E-15 8.2E-20 169.6 52.0 544 129-719 204-887 (980)
35 2z6g_A B-catenin; FULL-length, 99.8 3.8E-17 1.3E-21 181.5 36.5 509 37-580 117-668 (780)
36 1w63_A Adapter-related protein 99.8 7.7E-16 2.6E-20 166.5 41.9 512 10-575 41-577 (618)
37 3m1i_C Exportin-1; heat repeat 99.8 9.2E-15 3.1E-19 169.1 52.1 625 16-699 113-930 (1049)
38 3ul1_B Importin subunit alpha- 99.8 9.7E-17 3.3E-21 169.9 31.6 362 119-492 58-433 (510)
39 3tpo_A Importin subunit alpha- 99.8 1.2E-16 4E-21 170.5 32.3 365 116-492 74-452 (529)
40 2z6g_A B-catenin; FULL-length, 99.8 7.3E-17 2.5E-21 179.3 31.3 503 4-533 116-663 (780)
41 2qk1_A Protein STU2; STU2P, XM 99.8 1.7E-18 5.8E-23 163.0 13.0 210 334-546 13-233 (249)
42 2z6h_A Catenin beta-1, beta-ca 99.8 5.3E-16 1.8E-20 169.9 34.4 457 5-491 16-529 (644)
43 2z6h_A Catenin beta-1, beta-ca 99.8 2E-15 6.9E-20 165.4 36.7 472 80-578 16-530 (644)
44 1jdh_A Beta-catenin; beta-cate 99.8 3.2E-16 1.1E-20 168.5 29.7 453 5-487 19-528 (529)
45 1jdh_A Beta-catenin; beta-cate 99.7 6.1E-16 2.1E-20 166.3 30.2 469 34-531 16-528 (529)
46 3tpo_A Importin subunit alpha- 99.7 2.4E-15 8.1E-20 160.3 31.5 399 36-487 77-495 (529)
47 1w63_A Adapter-related protein 99.7 1.4E-14 4.8E-19 156.7 37.6 475 5-532 72-576 (618)
48 4hat_C Exportin-1; heat repeat 99.7 1.5E-12 5E-17 147.0 54.6 627 18-702 115-933 (1023)
49 2qk2_A LP04448P; mini spindles 99.7 3.7E-17 1.3E-21 155.1 14.1 204 334-546 12-218 (242)
50 3ul1_B Importin subunit alpha- 99.7 9.1E-15 3.1E-19 154.8 33.6 386 82-487 61-476 (510)
51 2vgl_A Adaptor protein complex 99.7 9.7E-14 3.3E-18 149.3 37.1 485 5-532 76-588 (621)
52 2vgl_A Adaptor protein complex 99.7 2.8E-12 9.5E-17 138.0 44.3 500 16-573 51-587 (621)
53 2qk2_A LP04448P; mini spindles 99.6 1.3E-14 4.5E-19 137.4 15.4 206 381-595 18-226 (242)
54 2qk1_A Protein STU2; STU2P, XM 99.6 3.1E-14 1.1E-18 133.9 14.8 204 383-589 21-235 (249)
55 1xm9_A Plakophilin 1; armadill 99.5 3E-12 1E-16 133.2 28.2 357 119-488 3-448 (457)
56 3l6x_A Catenin delta-1; cateni 99.5 1E-10 3.5E-15 122.0 37.4 366 114-489 43-476 (584)
57 3opb_A SWI5-dependent HO expre 99.5 1.6E-09 5.5E-14 114.7 44.7 461 91-578 145-686 (778)
58 4hxt_A De novo protein OR329; 99.5 2.6E-12 8.8E-17 123.0 20.1 242 339-584 4-250 (252)
59 3nmz_A APC variant protein; pr 99.5 1.1E-11 3.7E-16 126.4 25.3 361 119-492 33-453 (458)
60 3gjx_A Exportin-1; transport, 99.5 3.2E-08 1.1E-12 111.3 55.2 626 16-701 125-956 (1073)
61 4hxt_A De novo protein OR329; 99.4 3.6E-11 1.2E-15 115.0 25.1 243 161-456 4-249 (252)
62 3l6x_A Catenin delta-1; cateni 99.4 6.5E-10 2.2E-14 116.0 32.2 355 82-448 52-476 (584)
63 4db8_A Armadillo-repeat protei 99.4 3.4E-11 1.2E-15 115.1 19.8 235 161-448 14-251 (252)
64 3opb_A SWI5-dependent HO expre 99.4 2.8E-08 9.7E-13 105.3 43.2 509 34-576 168-729 (778)
65 4db8_A Armadillo-repeat protei 99.4 6.8E-12 2.3E-16 120.0 14.0 234 338-575 13-251 (252)
66 1oyz_A Hypothetical protein YI 99.3 1.7E-10 5.8E-15 112.0 22.8 251 161-484 25-277 (280)
67 1xm9_A Plakophilin 1; armadill 99.3 4.7E-10 1.6E-14 116.7 26.8 353 81-447 5-448 (457)
68 1oyz_A Hypothetical protein YI 99.3 1.2E-10 3.9E-15 113.2 20.4 254 203-528 24-277 (280)
69 3nmz_A APC variant protein; pr 99.3 2.8E-09 9.5E-14 108.7 30.5 330 201-533 69-450 (458)
70 2iw3_A Elongation factor 3A; a 99.3 1.1E-09 3.9E-14 120.0 28.3 322 215-556 23-355 (986)
71 4db6_A Armadillo repeat protei 99.3 8.2E-11 2.8E-15 108.8 16.6 194 336-532 11-208 (210)
72 1xqr_A HSPBP1 protein; armadil 99.2 1.5E-09 5.3E-14 104.1 23.2 216 352-572 55-284 (296)
73 2db0_A 253AA long hypothetical 99.2 1.1E-08 3.8E-13 85.0 23.9 213 207-447 33-245 (253)
74 3ltm_A Alpha-REP4; protein eng 99.2 2.5E-10 8.5E-15 105.5 14.5 189 336-578 18-206 (211)
75 3ltj_A Alpharep-4; protein eng 99.2 5E-10 1.7E-14 102.5 16.5 187 333-573 10-196 (201)
76 4db6_A Armadillo repeat protei 99.2 6.9E-10 2.4E-14 102.5 17.1 186 296-488 16-208 (210)
77 1xqr_A HSPBP1 protein; armadil 99.1 2.9E-09 9.8E-14 102.2 19.7 153 338-490 82-239 (296)
78 3ltj_A Alpharep-4; protein eng 99.1 1.8E-09 6.3E-14 98.7 17.4 185 246-488 13-197 (201)
79 3a6p_A Exportin-5; exportin-5, 99.1 4.1E-07 1.4E-11 105.8 39.5 480 91-596 25-634 (1204)
80 2iw3_A Elongation factor 3A; a 99.1 3.2E-08 1.1E-12 108.7 27.7 244 337-597 54-304 (986)
81 3ltm_A Alpha-REP4; protein eng 99.1 2.6E-09 9.1E-14 98.6 16.1 183 252-492 24-206 (211)
82 3nmw_A APC variant protein; AR 99.1 2.5E-08 8.5E-13 98.6 23.3 271 175-493 47-338 (354)
83 3nmw_A APC variant protein; AR 99.0 6E-08 2E-12 95.8 25.2 269 133-452 47-338 (354)
84 2db0_A 253AA long hypothetical 99.0 8.3E-08 2.8E-12 79.8 21.1 216 336-575 31-246 (253)
85 4ady_A RPN2, 26S proteasome re 99.0 1.2E-06 4E-11 95.2 34.3 329 96-487 375-717 (963)
86 4ady_A RPN2, 26S proteasome re 98.9 2.4E-05 8.3E-10 85.1 38.2 346 119-531 359-717 (963)
87 3b2a_A TON_1937, putative unch 98.8 4.4E-07 1.5E-11 79.4 17.3 186 377-575 32-218 (265)
88 2of3_A ZYG-9; multifunctional 98.8 9E-07 3.1E-11 81.7 20.6 185 343-537 52-240 (266)
89 4ffb_C Protein STU2; tubulin f 98.8 2.6E-07 9E-12 88.9 17.3 188 342-537 14-216 (278)
90 3tjz_B Coatomer subunit gamma; 98.7 6.4E-07 2.2E-11 87.1 19.1 290 69-403 59-349 (355)
91 1vsy_5 Proteasome activator BL 98.7 9.8E-06 3.4E-10 90.6 30.4 449 5-491 135-666 (997)
92 2of3_A ZYG-9; multifunctional 98.7 2.3E-06 8E-11 79.0 20.0 197 384-594 52-255 (266)
93 3b2a_A TON_1937, putative unch 98.6 6.6E-06 2.3E-10 72.1 20.4 218 337-568 33-254 (265)
94 3tjz_B Coatomer subunit gamma; 98.6 6E-07 2.1E-11 87.3 15.7 306 93-484 42-348 (355)
95 3grl_A General vesicular trans 98.6 0.00074 2.5E-08 70.0 37.9 198 35-237 21-243 (651)
96 4ffb_C Protein STU2; tubulin f 98.5 3.5E-06 1.2E-10 81.0 16.9 179 312-495 22-218 (278)
97 1te4_A Conserved protein MTH18 98.5 3.6E-08 1.2E-12 82.5 1.8 121 335-486 10-130 (131)
98 1vsy_5 Proteasome activator BL 98.3 8E-06 2.7E-10 91.3 14.7 435 33-494 461-971 (997)
99 4gmo_A Putative uncharacterize 98.2 0.0055 1.9E-07 66.8 36.6 159 119-282 36-218 (684)
100 3tt9_A Plakophilin-2; cell adh 98.2 3.9E-05 1.3E-09 70.0 14.6 195 380-575 10-229 (233)
101 3tt9_A Plakophilin-2; cell adh 98.1 0.0001 3.5E-09 67.3 17.0 151 338-489 9-180 (233)
102 3oc3_A Helicase MOT1, MOT1; re 98.1 7.1E-05 2.4E-09 74.5 16.1 211 262-488 187-403 (800)
103 3grl_A General vesicular trans 98.1 0.0023 7.8E-08 66.4 27.0 336 200-574 19-393 (651)
104 3oc3_A Helicase MOT1, MOT1; re 98.1 3.3E-05 1.1E-09 76.8 12.8 215 338-573 175-402 (800)
105 1te4_A Conserved protein MTH18 98.0 7.7E-06 2.6E-10 68.2 6.5 87 339-445 44-130 (131)
106 1w9c_A CRM1 protein, exportin 97.8 9.6E-05 3.3E-09 69.6 10.6 145 541-721 68-217 (321)
107 1vsy_4 Proteasome activator BL 97.7 0.011 3.7E-07 64.5 25.3 301 371-707 332-696 (799)
108 3u0r_A Apoptosis inhibitor 5; 97.6 0.073 2.5E-06 52.8 31.7 327 20-372 10-364 (507)
109 4gmo_A Putative uncharacterize 97.6 0.00061 2.1E-08 74.3 14.2 153 378-533 35-214 (684)
110 3u0r_A Apoptosis inhibitor 5; 97.6 0.06 2.1E-06 53.3 25.9 267 314-597 43-322 (507)
111 3l9t_A Putative uncharacterize 97.5 0.0037 1.3E-07 55.7 14.8 172 1-191 35-209 (240)
112 3l9t_A Putative uncharacterize 97.2 0.0023 7.7E-08 57.0 10.7 142 335-493 69-211 (240)
113 1vsy_4 Proteasome activator BL 97.0 0.15 5.1E-06 55.7 24.6 114 119-235 340-455 (799)
114 3gs3_A Symplekin, LD45768P; he 96.9 0.28 9.5E-06 45.1 21.9 83 159-246 144-254 (257)
115 1ho8_A Vacuolar ATP synthase s 96.7 0.58 2E-05 46.8 31.4 352 30-408 72-477 (480)
116 3fga_B Serine/threonine-protei 96.6 0.087 3E-06 51.5 16.9 234 5-247 131-378 (403)
117 3o2t_A Symplekin; heat repeat, 96.5 0.69 2.4E-05 45.2 22.9 171 332-510 58-273 (386)
118 3gs3_A Symplekin, LD45768P; he 96.4 0.55 1.9E-05 43.1 23.8 178 97-282 34-247 (257)
119 3o2t_A Symplekin; heat repeat, 96.4 0.78 2.7E-05 44.8 25.0 189 97-299 44-271 (386)
120 4atg_A TAF6; transcription, TF 96.4 0.13 4.5E-06 44.7 15.0 150 411-575 7-159 (196)
121 2npp_B PP2A, B subunit, serine 96.3 0.1 3.5E-06 52.0 15.4 234 4-245 163-409 (449)
122 4atg_A TAF6; transcription, TF 96.1 0.3 1E-05 42.4 15.5 127 370-512 7-142 (196)
123 3fga_B Serine/threonine-protei 96.1 1 3.6E-05 44.0 21.0 223 214-450 137-368 (403)
124 1lsh_A Lipovitellin (LV-1N, LV 95.6 0.96 3.3E-05 51.7 21.9 151 314-490 410-577 (1056)
125 2jak_A Serine/threonine-protei 95.5 0.26 8.9E-06 48.0 14.1 216 348-571 140-363 (392)
126 2npp_B PP2A, B subunit, serine 95.0 1.8 6E-05 43.3 18.6 218 214-447 170-398 (449)
127 1lsh_A Lipovitellin (LV-1N, LV 94.9 1.5 5E-05 50.2 20.6 131 337-484 391-538 (1056)
128 1w9c_A CRM1 protein, exportin 94.8 2 6.7E-05 40.7 17.4 140 334-473 70-228 (321)
129 1juq_A ADP-ribosylation factor 94.4 0.85 2.9E-05 38.9 13.0 100 345-452 25-132 (171)
130 1ho8_A Vacuolar ATP synthase s 93.7 6.4 0.00022 39.5 27.0 58 390-448 417-476 (480)
131 3ldz_A STAM-1, signal transduc 93.6 1 3.5E-05 37.0 11.5 75 378-452 42-118 (140)
132 3ldz_A STAM-1, signal transduc 93.3 0.72 2.5E-05 37.9 10.2 77 418-494 41-119 (140)
133 1juq_A ADP-ribosylation factor 93.2 1.1 3.8E-05 38.2 11.5 76 418-493 49-132 (171)
134 3dad_A FH1/FH2 domain-containi 93.1 4.4 0.00015 38.4 16.2 151 341-492 122-289 (339)
135 1mhq_A ADP-ribosylation factor 92.7 3.7 0.00013 33.9 13.7 100 345-452 13-120 (148)
136 3g2s_A C-terminal fragment of 92.2 1.1 3.6E-05 37.2 9.7 76 418-493 47-130 (149)
137 1x5b_A Signal transducing adap 92.2 2.8 9.5E-05 35.4 12.5 99 346-452 28-129 (163)
138 3g2s_A C-terminal fragment of 92.0 2.1 7.3E-05 35.4 11.3 75 378-452 48-130 (149)
139 1mhq_A ADP-ribosylation factor 91.5 1.4 4.9E-05 36.4 9.8 76 418-493 37-120 (148)
140 1upk_A MO25 protein; transfera 90.7 12 0.0004 35.5 20.3 180 49-236 91-284 (341)
141 1x5b_A Signal transducing adap 90.5 1.6 5.5E-05 36.9 9.3 77 418-494 51-130 (163)
142 3dad_A FH1/FH2 domain-containi 90.2 13 0.00044 35.3 20.3 153 4-193 119-290 (339)
143 2jak_A Serine/threonine-protei 89.5 1.9 6.5E-05 42.0 10.1 177 5-184 176-362 (392)
144 3zyq_A Hepatocyte growth facto 89.2 8.4 0.00029 34.6 13.6 99 346-452 21-122 (226)
145 1lrv_A LRV, leucine-rich repea 88.9 0.14 4.7E-06 47.0 1.6 92 342-485 151-242 (244)
146 1elk_A Target of MYB1; superhe 87.5 12 0.00039 31.4 12.6 99 346-452 29-134 (157)
147 3zyq_A Hepatocyte growth facto 85.9 4.1 0.00014 36.7 9.5 76 418-493 44-122 (226)
148 2fv2_A RCD1 required for cell 85.6 20 0.0007 32.3 18.8 57 132-189 116-174 (268)
149 1vdy_A Hypothetical protein (R 84.9 5.3 0.00018 32.4 8.6 95 313-407 25-130 (140)
150 1dvp_A HRS, hepatocyte growth 84.9 16 0.00054 32.7 12.9 75 378-452 42-119 (220)
151 2b6c_A Hypothetical protein EF 84.5 11 0.00036 33.8 11.6 134 340-493 58-192 (220)
152 1upk_A MO25 protein; transfera 83.7 30 0.001 32.8 23.9 111 379-489 165-283 (341)
153 1elk_A Target of MYB1; superhe 83.1 8.8 0.0003 32.1 9.7 76 418-493 52-134 (157)
154 1dvp_A HRS, hepatocyte growth 81.3 6.7 0.00023 35.1 8.9 76 418-493 41-119 (220)
155 1sz9_A PCF11 protein; RNA poly 79.8 24 0.00081 28.9 11.4 97 415-511 39-136 (144)
156 1lrv_A LRV, leucine-rich repea 79.3 0.63 2.2E-05 42.5 1.5 67 343-444 176-242 (244)
157 1vdy_A Hypothetical protein (R 78.0 9.4 0.00032 31.0 7.7 72 375-447 46-129 (140)
158 3qml_C Protein SLS1, nucleotid 76.0 51 0.0017 30.7 16.8 108 379-489 72-189 (315)
159 3rru_A TOM1L1 protein; structu 75.2 27 0.00091 28.9 10.0 113 345-465 28-148 (152)
160 2b6c_A Hypothetical protein EF 74.5 7.8 0.00027 34.7 7.3 109 337-458 89-198 (220)
161 2fv2_A RCD1 required for cell 67.8 71 0.0024 28.9 12.0 95 355-449 74-175 (268)
162 3jxy_A Alkylpurine DNA glycosy 67.2 71 0.0024 28.6 15.4 131 40-191 65-197 (232)
163 4flb_A Regulation of nuclear P 62.7 57 0.002 26.0 11.9 100 377-485 7-108 (132)
164 1t06_A Hypothetical protein; s 62.4 18 0.0006 32.7 7.0 73 337-411 108-184 (235)
165 3ebb_A Phospholipase A2-activa 62.1 1.1E+02 0.0036 28.9 14.4 112 378-489 147-263 (304)
166 3jxy_A Alkylpurine DNA glycosy 60.8 51 0.0017 29.6 9.7 91 389-492 107-198 (232)
167 3rru_A TOM1L1 protein; structu 60.4 17 0.00057 30.1 5.8 76 418-493 52-134 (152)
168 4fu3_A Regulation of nuclear P 55.0 24 0.00083 28.4 6.0 65 379-452 8-72 (135)
169 3ebb_A Phospholipase A2-activa 54.3 1.4E+02 0.0049 28.0 14.8 115 117-236 146-264 (304)
170 3eg5_B Protein diaphanous homo 53.3 1.7E+02 0.0059 28.6 18.4 60 350-410 133-194 (383)
171 3d9j_A RNA-binding protein 16; 52.2 90 0.0031 25.4 9.0 73 415-487 38-117 (145)
172 3s4w_B Protein FACD2, fanconi 49.8 3.6E+02 0.012 31.3 31.6 154 288-449 396-550 (1323)
173 3d9j_A RNA-binding protein 16; 47.4 1.1E+02 0.0039 24.8 10.2 53 437-493 23-75 (145)
174 4flb_A Regulation of nuclear P 47.0 1.1E+02 0.0037 24.4 11.1 106 416-532 5-111 (132)
175 4fu3_A Regulation of nuclear P 43.3 1.2E+02 0.0042 24.1 11.1 65 419-492 7-71 (135)
176 3qml_C Protein SLS1, nucleotid 42.4 2.2E+02 0.0074 26.6 16.7 192 394-593 44-264 (315)
177 1sz9_A PCF11 protein; RNA poly 38.3 1.4E+02 0.0049 24.2 8.0 95 376-470 41-136 (144)
178 1t06_A Hypothetical protein; s 31.2 1E+02 0.0034 27.7 6.6 71 379-451 109-183 (235)
179 3gae_A Protein DOA1; UFD3, CDC 24.8 1.1E+02 0.0038 27.8 5.7 98 47-148 101-218 (253)
180 2x6h_A GH13170P, VPS34, phosph 24.4 3.1E+02 0.011 29.3 9.6 66 15-90 89-155 (696)
181 1xgw_A Epsin 4; ENTH, enthopro 24.2 1.4E+02 0.0048 25.3 5.7 53 101-153 53-108 (176)
No 1
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=1.1e-59 Score=535.32 Aligned_cols=646 Identities=18% Similarity=0.277 Sum_probs=553.5
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCcHHHHHHHHh--cCCChhHHHHHHHHHHHhhhhhhcCCCHHHHHHHH
Q 004960 3 QSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLR--TAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVK 80 (721)
Q Consensus 3 ~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~p~~~~~l~~il~--~~~~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i~ 80 (721)
+++.++|+.++|||+++|++|+++|++++++|+|...|..++. ++.++.+|++|+++|||.+.++|..++++.+..||
T Consensus 13 ~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik 92 (852)
T 4fdd_A 13 QQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIK 92 (852)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHHHhCCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHH
Confidence 5788899999999999999999999999999999999999998 45789999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcc-----cc
Q 004960 81 QSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTF-----RP 155 (721)
Q Consensus 81 ~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~-----~~ 155 (721)
+.+++.|. ++++.+|+.++.+++.|++.+++ +.||++++.+.+.++++++..|+.++.+++.+++..+..+ ..
T Consensus 93 ~~ll~~l~-~~~~~vr~~~a~~i~~ia~~~~~-~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~ 170 (852)
T 4fdd_A 93 SECLNNIG-DSSPLIRATVGILITTIASKGEL-QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDR 170 (852)
T ss_dssp HHHHTTTT-CSSHHHHHHHHHHHHHHHHHTTT-TTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSS
T ss_pred HHHHHHHc-CCCHHHHHHHHHHHHHHHHhcCc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcc
Confidence 99999987 68999999999999999998866 5999999999999999999999999999999999876543 34
Q ss_pred cHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 004960 156 HFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIE 235 (721)
Q Consensus 156 ~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~ 235 (721)
.++.+++.+.+++++ +++.+|..|++++..++...+. .....++.++..+...+.+++++++..++++|..+++
T Consensus 171 ~~~~il~~l~~~l~~-~~~~vR~~A~~aL~~~~~~~~~-----~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~ 244 (852)
T 4fdd_A 171 PLNIMIPKFLQFFKH-SSPKIRSHAVACVNQFIISRTQ-----ALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLE 244 (852)
T ss_dssp CHHHHHHHHTTTTTC-SSHHHHHHHHHHHHTTTTTTCH-----HHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhcccH-----HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 578999999999998 8999999999999988765421 1344556666666667888899999999999999999
Q ss_pred CcccchhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhH--hhhhhcCChHHHHHHHHhhhc-----------
Q 004960 236 SPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKY--NSLKKHKLVIPILQVMCPLLA----------- 302 (721)
Q Consensus 236 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~--~~~~~~~~~~~il~~l~~~l~----------- 302 (721)
..+.++.++++.+++.++..+.+. ++.+|..|+++|..+++... ..+ .+++..+++.+++.+.
T Consensus 245 ~~~~~~~~~l~~l~~~l~~~~~~~--~~~vr~~a~e~l~~l~~~~~~~~~~--~~~~~~l~p~ll~~l~~~e~d~~~~~~ 320 (852)
T 4fdd_A 245 VRMDRLLPHMHNIVEYMLQRTQDQ--DENVALEACEFWLTLAEQPICKDVL--VRHLPKLIPVLVNGMKYSDIDIILLKG 320 (852)
T ss_dssp HCHHHHGGGHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHTTSTTHHHHH--TTTHHHHHHHHHHHTSCCHHHHHHHHC
T ss_pred hCHHHHHHHHHHHHHHHHHHccCC--cHHHHHHHHHHHHHHhcchhHHHHH--HHHHHHHHHHHHHHcCCcHhHHHHhcC
Confidence 999999999999999998887665 78899999999999986421 112 2568888888888874
Q ss_pred cCCCCCCC----CCCcHHHHHHHHHHHHHHHcCccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHH
Q 004960 303 ESNEAGED----DDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLES 378 (721)
Q Consensus 303 ~~~~~~~~----~~~~~~~~a~~~l~~l~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~ 378 (721)
+.++|+++ ++|.+|.++..+++.++...++.+++.+++.+.+.+.+++|..|++|+.++|.+++++++.+.++++.
T Consensus 321 d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~ 400 (852)
T 4fdd_A 321 DVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPE 400 (852)
T ss_dssp ------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHH
T ss_pred CcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 21122222 46899999999999999999988899999999999999999999999999999999999888889999
Q ss_pred HHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHH-HHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccc
Q 004960 379 VLHIVLGALRDPEQFVRGAASFALGQFAEYLQPE-IVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPF 457 (721)
Q Consensus 379 i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~ 457 (721)
+++.+++.++|+++.||.+|+++++++++..++. ...++.++++.+++.+.+.++.||..|+++|.++++..+..+.||
T Consensus 401 ~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~ 480 (852)
T 4fdd_A 401 LIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPY 480 (852)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGG
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhH
Confidence 9999999999999999999999999999987542 345789999999999999999999999999999999998889999
Q ss_pred hHHHHHHHHHhhcCCC----------------------------------------------hhHHHHHHHHHHHHHHHh
Q 004960 458 LDPLMGKLLAALENSP----------------------------------------------RNLQETCMSAIGSVAAAA 491 (721)
Q Consensus 458 ~~~i~~~l~~~l~~~~----------------------------------------------~~v~~~~l~~l~~l~~~~ 491 (721)
++.+++.|...++..+ +.++ .++++++.++...
T Consensus 481 l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~ 559 (852)
T 4fdd_A 481 LAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATAL 559 (852)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHH
Confidence 9999998888876433 2222 4678888888888
Q ss_pred hhcchhhHHHHHHHHHHHHhcc--------------CchhhhhHHHHHHHHHHHHHhhchhhccCCh--HHHHHHHHhcc
Q 004960 492 EQAFIPYAERVLELLKIFMVLT--------------NDEDLRSRARATELLGLVAESVGRARMEPIL--PPFVEAAISGF 555 (721)
Q Consensus 492 ~~~~~~~~~~i~~~l~~~l~~~--------------~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~~i~~~l~~~l 555 (721)
|..+.||++.+++.+.+.+... ..++...+..++..++.++..+|. .+.+++ +.+++.+..++
T Consensus 560 g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~-~~~~~~~~~~~~~~l~~~l 638 (852)
T 4fdd_A 560 QSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGG-NIEQLVARSNILTLMYQCM 638 (852)
T ss_dssp GGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGG-GGHHHHHTCCHHHHHHHHT
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhH-hHHHHhcCCcHHHHHHHHh
Confidence 9999999999888665555321 122455777889999999999984 777776 68899999999
Q ss_pred CCCChhhHHHHHHHHHHHHHHcccCcccchhhhHHHHHhhccCCCCCccCCCCCccccccCCCCCCCCchhhhhccccce
Q 004960 556 GLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNI 635 (721)
Q Consensus 556 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (721)
+++++++|+.++.+++.++..+|..+.+|++.++|.+++.+..
T Consensus 639 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~------------------------------------- 681 (852)
T 4fdd_A 639 QDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNP------------------------------------- 681 (852)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCT-------------------------------------
T ss_pred CCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCc-------------------------------------
Confidence 9889999999999999999999999999999999999976521
Q ss_pred eeecchhhhHHHHHHHHHHHHHHccccccchHHHHHHHHHhcccCC--ChhHHHHHHHHHHHHHHHHHHh
Q 004960 636 SVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVRHASYF--HEDVRYQAVFALKNILTAAHAI 703 (721)
Q Consensus 636 ~~~~~~~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~vr~~a~~~l~~l~~~~~~~ 703 (721)
...+.|..|++++|.++.++++.+.||++.+++.|.++++++ +..+++.|+.++|++.......
T Consensus 682 ----~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~ 747 (852)
T 4fdd_A 682 ----EFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQE 747 (852)
T ss_dssp ----TSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHH
T ss_pred ----cchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHH
Confidence 113568999999999999999999999999999999998764 5789999999999998875443
No 2
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=9.3e-55 Score=499.14 Aligned_cols=651 Identities=19% Similarity=0.272 Sum_probs=555.7
Q ss_pred hHHHHHHHHh-cCCChHHHHHHHHHHHHHhcC--CCcHHHHHHHHhcC-CChhHHHHHHHHHHHhhhhh-----------
Q 004960 3 QSLELLLIQF-LMPDNDARRQAEDQIKRLAKD--PQVVPALVQHLRTA-KTPNVRQLAAVLLRKKITGH----------- 67 (721)
Q Consensus 3 ~~l~~ll~~~-~s~d~~~r~~A~~~L~~~~~~--p~~~~~l~~il~~~-~~~~vr~~a~~~l~~~i~~~----------- 67 (721)
+++.++|..+ .|||++.|++|+++|++++++ |+|+..|++++.++ .++.+|++|+++||+.+..+
T Consensus 4 ~~l~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~ 83 (861)
T 2bpt_A 4 AEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQR 83 (861)
T ss_dssp HHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHH
T ss_pred HHHHHHHHHcccCcCHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHHHHh
Confidence 4789999999 999999999999999999875 89999999999875 58999999999999998654
Q ss_pred hcC-CCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCC-cHHHHHHHHHHHHHh
Q 004960 68 WAK-LSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSE-QEEHREVALILFSSL 145 (721)
Q Consensus 68 w~~-~~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~-~~~~~~~al~~l~~i 145 (721)
|.. ++++.+..||+.+++.+.+ +++.+|+.++.+++.|+..++|.+.||+++|.+.+.++++ ++..|+.++.+++.+
T Consensus 84 ~~~~l~~~~~~~ik~~ll~~l~~-~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l 162 (861)
T 2bpt_A 84 WITQVSPEAKNQIKTNALTALVS-IEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYM 162 (861)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHH
T ss_pred HhhhCCHHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 676 9999999999999999985 6899999999999999999888568999999999999988 899999999999999
Q ss_pred hhhhhhc---ccccHHHHHHHHHHhhCCCC--CHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCH
Q 004960 146 TETIGQT---FRPHFADMQALLLKCLQDET--SNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEE 220 (721)
Q Consensus 146 ~~~~~~~---~~~~~~~l~~~l~~~l~~~~--~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~ 220 (721)
++..+.. +.++.+.+++.+..++.+ + ++.||..+++++..++.+......... ..+.++..+...+.++++
T Consensus 163 ~~~~~~~~~~~~~~~~~ll~~l~~~l~~-~~~~~~vr~~al~~l~~~~~~~~~~~~~~~---~~~~ll~~l~~~~~~~~~ 238 (861)
T 2bpt_A 163 CESADPQSQALVSSSNNILIAIVQGAQS-TETSKAVRLAALNALADSLIFIKNNMEREG---ERNYLMQVVCEATQAEDI 238 (861)
T ss_dssp HHTSSTTSSTTGGGHHHHHHHHHHHHST-TCCCHHHHHHHHHHHHHHGGGCHHHHTSHH---HHHHHHHHHHHHHTCSCH
T ss_pred HHcCChhhhHHHHHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHHHHHccChh---HHHHHHHHHHHHhcCCCH
Confidence 9876544 567889999999999988 5 899999999999998776532211000 122345555556778899
Q ss_pred HHHHHHHHHHHHHhcCcccchhhhHH-HHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhh---h--------h--
Q 004960 221 DVAVIAFEIFDELIESPAPLLGDSVK-SIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSL---K--------K-- 286 (721)
Q Consensus 221 ~~~~~a~~~l~~l~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~---~--------~-- 286 (721)
+++..+++++..+++..+..+.+++. .+++.+...+.+. ++.+|..++++|..+++...... . .
T Consensus 239 ~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~--~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 316 (861)
T 2bpt_A 239 EVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSP--NDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYN 316 (861)
T ss_dssp HHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHH
Confidence 99999999999999988888888888 8888877766554 78999999999999987642100 0 0
Q ss_pred --cCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcCccccHhHHHHHHhhhcCCChhhHhHHHHHHHHH
Q 004960 287 --HKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGII 364 (721)
Q Consensus 287 --~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i 364 (721)
.+++..+++.++..+.+.++++++++|.+|.++..++..++...++.+++.+++.+.+.+.+.+|..|++++.+++.+
T Consensus 317 ~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i 396 (861)
T 2bpt_A 317 FALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSI 396 (861)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHH
Confidence 023466778888888877666566778999999999999999999888899999999999999999999999999999
Q ss_pred hhccH-HHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHH--HHhhhhHHHHHHHhccCCChHHHHHHHH
Q 004960 365 SEGCA-EWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEI--VSHYESVLPCILNALEDESDEVKEKSYY 441 (721)
Q Consensus 365 ~~~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~l~~l~~~l~~~~~~v~~~a~~ 441 (721)
++++. +.+.++++.+++.+++.++|+++.||.++++++++++..+++.+ .++++.+++.+++.+.++ +.||..+++
T Consensus 397 ~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~ 475 (861)
T 2bpt_A 397 MDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSW 475 (861)
T ss_dssp SSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHH
Confidence 99874 77888999999999999999999999999999999999876543 357899999999999886 899999999
Q ss_pred HHHHHHHhhh----hccccchHHHHHHHHHhhcCCC--hhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHhcc--
Q 004960 442 ALAAFCEDMG----EEILPFLDPLMGKLLAALENSP--RNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLT-- 513 (721)
Q Consensus 442 al~~l~~~~~----~~~~~~~~~i~~~l~~~l~~~~--~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~-- 513 (721)
++..+++.++ ..+.||++.+++.+.+.+.+.+ ..+|..++.+++.++...+..+.+|++.++|.+.+.+...
T Consensus 476 al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 555 (861)
T 2bpt_A 476 TIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMS 555 (861)
T ss_dssp HHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHh
Confidence 9999999875 5678999999999999998543 7899999999999999999989999999999888777532
Q ss_pred ------C----chhhhhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCCh-hhHHHHHHHHHHHHHHcccCcc
Q 004960 514 ------N----DEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFS-ELREYTHGFFSNIAGVLEDGFA 582 (721)
Q Consensus 514 ------~----~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~-~~~~~~~~~l~~l~~~~~~~~~ 582 (721)
+ ++...+|..++.+++.++..+|. .+.++++.+++.++..+++.++ .+|..++.+++.++...|.+|.
T Consensus 556 ~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~ 634 (861)
T 2bpt_A 556 VDENQLTLEDAQSLQELQSNILTVLAAVIRKSPS-SVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFE 634 (861)
T ss_dssp SCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGG-GTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGH
T ss_pred hhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHH
Confidence 1 12345677899999999999886 7889999999999999887766 8999999999999999999999
Q ss_pred cchhhhHHHHHhhccCCCCCccCCCCCccccccCCCCCCCCchhhhhccccceeeecchhhhHHHHHHHHHHHHHHcccc
Q 004960 583 QYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSS 662 (721)
Q Consensus 583 ~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~~~~ 662 (721)
+|++.++|.+++.++.+ ..+.|..|+.+++.++..+++.
T Consensus 635 ~~l~~i~~~l~~~l~~~-----------------------------------------~~~vr~~a~~~l~~l~~~~~~~ 673 (861)
T 2bpt_A 635 KYLETFSPYLLKALNQV-----------------------------------------DSPVSITAVGFIADISNSLEED 673 (861)
T ss_dssp HHHHHHHHHHHHHHHCT-----------------------------------------TSHHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHHhccc-----------------------------------------cHHHHHHHHHHHHHHHHHhchh
Confidence 99999999999876311 1236889999999999999999
Q ss_pred ccchHHHHHHHHHhcccCCC--hhHHHHHHHHHHHHHHHHHHh
Q 004960 663 YAPFLEESLKILVRHASYFH--EDVRYQAVFALKNILTAAHAI 703 (721)
Q Consensus 663 ~~~~~~~~~~~l~~~~~~~~--~~vr~~a~~~l~~l~~~~~~~ 703 (721)
+.||++.+++.+.+.+.+.+ .++|..+..+++.++..++..
T Consensus 674 ~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~ 716 (861)
T 2bpt_A 674 FRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGAD 716 (861)
T ss_dssp GHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGG
T ss_pred ccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhh
Confidence 99999999999999887653 899999999999999886543
No 3
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=2.3e-52 Score=480.23 Aligned_cols=653 Identities=19% Similarity=0.270 Sum_probs=548.4
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHhcC--CCcHHHHHHHHhcC-CChhHHHHHHHHHHHhh-----------hhhhc
Q 004960 4 SLELLLIQFLMPDNDARRQAEDQIKRLAKD--PQVVPALVQHLRTA-KTPNVRQLAAVLLRKKI-----------TGHWA 69 (721)
Q Consensus 4 ~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~--p~~~~~l~~il~~~-~~~~vr~~a~~~l~~~i-----------~~~w~ 69 (721)
++.++|.++.|+|++.|++|+++|+++.++ |+|+..|++++.++ .++.+|++|+++||+.+ .++|.
T Consensus 2 ~l~~~L~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~ 81 (876)
T 1qgr_A 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWL 81 (876)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhc
Confidence 588999999999999999999999999876 89999999999875 57999999999999987 46799
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCC--cHHHHHHHHHHHHHhhh
Q 004960 70 KLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSE--QEEHREVALILFSSLTE 147 (721)
Q Consensus 70 ~~~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~--~~~~~~~al~~l~~i~~ 147 (721)
.++++.+..||+.+++.+.+ +++.+ +.++++++.+++.++|.+.||+++|.+.+.++++ ++..|..++.+++.+++
T Consensus 82 ~l~~~~~~~ik~~ll~~l~~-~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~ 159 (876)
T 1qgr_A 82 AIDANARREVKNYVLHTLGT-ETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQ 159 (876)
T ss_dssp TSCHHHHHHHHHHHHHHTTT-CCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCC-CcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999985 56667 9999999999998877669999999999999998 89999999999999998
Q ss_pred hh-hhcccccHHHHHHHHHHhhCCCC-CHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHH
Q 004960 148 TI-GQTFRPHFADMQALLLKCLQDET-SNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVI 225 (721)
Q Consensus 148 ~~-~~~~~~~~~~l~~~l~~~l~~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~ 225 (721)
.. ++.+..+.+.+++.+.+++.++. +..+|..+++++..++.+.........+. +.+++.+...+.+.+++++..
T Consensus 160 ~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~---~~il~~l~~~~~~~~~~vr~~ 236 (876)
T 1qgr_A 160 DIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESER---HFIMQVVCEATQCPDTRVRVA 236 (876)
T ss_dssp HSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHH---HHHHHHHHHHTTCSSHHHHHH
T ss_pred hcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHcCCCCHHHHHH
Confidence 75 45567889999999999998832 78999999999999887643221101111 224444445667788999999
Q ss_pred HHHHHHHHhcCcccchhhhHH-HHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhh-------h-------h-hcC-
Q 004960 226 AFEIFDELIESPAPLLGDSVK-SIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNS-------L-------K-KHK- 288 (721)
Q Consensus 226 a~~~l~~l~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~-------~-------~-~~~- 288 (721)
+++++..+++..+..+.+++. .+++.++....+. ++.+|..++++|..+++..... . + ...
T Consensus 237 a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (876)
T 1qgr_A 237 ALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD--IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFY 314 (876)
T ss_dssp HHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHH
Confidence 999999999988888888888 8888888766544 7889999999999998753210 0 0 001
Q ss_pred ---ChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcCccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHh
Q 004960 289 ---LVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIIS 365 (721)
Q Consensus 289 ---~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~ 365 (721)
.+..+++.++..+...++|+++++|.+|.++..++..++...++.+++.+++.+.+.+.+++|..|++++.+++.++
T Consensus 315 ~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~ 394 (876)
T 1qgr_A 315 AKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCIL 394 (876)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHH
Confidence 23567777888887766555667899999999999999999988888999999999999999999999999999999
Q ss_pred hccH-HHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHH--HHhhhhHHHHHHHhccCCChHHHHHHHHH
Q 004960 366 EGCA-EWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEI--VSHYESVLPCILNALEDESDEVKEKSYYA 442 (721)
Q Consensus 366 ~~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~l~~l~~~l~~~~~~v~~~a~~a 442 (721)
.++. +.+.++++.+++.++..++|+++.||..|+++++++++.+++.. .++++.+++.+++.+.++ +.|+..++++
T Consensus 395 ~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~a 473 (876)
T 1qgr_A 395 EGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWA 473 (876)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHH
Confidence 9886 66778899999999999999999999999999999999876542 368899999999999886 8899999999
Q ss_pred HHHHHHhhh--------------hccccchHHHHHHHHHhhcCC---ChhHHHHHHHHHHHHHHHhhhcchhhHHHHHHH
Q 004960 443 LAAFCEDMG--------------EEILPFLDPLMGKLLAALENS---PRNLQETCMSAIGSVAAAAEQAFIPYAERVLEL 505 (721)
Q Consensus 443 l~~l~~~~~--------------~~~~~~~~~i~~~l~~~l~~~---~~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~~ 505 (721)
+..+++..+ ..+.||++.+++.|.+.+.+. +..+|..++++++.++...|..+.+|++.++|.
T Consensus 474 l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~ 553 (876)
T 1qgr_A 474 FSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLV 553 (876)
T ss_dssp HHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHH
T ss_pred HHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHH
Confidence 999999876 347899999999999999875 467899999999999999998889999999998
Q ss_pred HHHHHhcc--------Cchh----hhhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCC--hhhHHHHHHHHH
Q 004960 506 LKIFMVLT--------NDED----LRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEF--SELREYTHGFFS 571 (721)
Q Consensus 506 l~~~l~~~--------~~~~----~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~--~~~~~~~~~~l~ 571 (721)
+...+... ++++ ..++..++.+++.++..+|.+.+.|+++.+++.++..++... +.++..++.+++
T Consensus 554 l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~ 633 (876)
T 1qgr_A 554 IMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVS 633 (876)
T ss_dssp HHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHH
Confidence 88777641 2222 345677889999999888745788999999999999998654 478999999999
Q ss_pred HHHHHcccCcccchhhhHHHHHhhccCCCCCccCCCCCccccccCCCCCCCCchhhhhccccceeeecchhhhHHHHHHH
Q 004960 572 NIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQA 651 (721)
Q Consensus 572 ~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~ 651 (721)
.++...|..|.||++.++|.++..+... ...+.|..|+++
T Consensus 634 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~----------------------------------------~~~~vr~~a~~~ 673 (876)
T 1qgr_A 634 TLVEVLGGEFLKYMEAFKPFLGIGLKNY----------------------------------------AEYQVCLAAVGL 673 (876)
T ss_dssp HHHHHHGGGGGGGHHHHHHHHHHHHHHC----------------------------------------TTHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHcCc----------------------------------------chHHHHHHHHHH
Confidence 9999999999999999999998765311 013468999999
Q ss_pred HHHHHHHccccccchHHHHHHHHHhcccC--CChhHHHHHHHHHHHHHHHHHHhc
Q 004960 652 LGLFALHTKSSYAPFLEESLKILVRHASY--FHEDVRYQAVFALKNILTAAHAIF 704 (721)
Q Consensus 652 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~vr~~a~~~l~~l~~~~~~~~ 704 (721)
++.++...++.+.||++.+++.+.+.+++ .+.++|..++.+++.++..++..+
T Consensus 674 l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~ 728 (876)
T 1qgr_A 674 VGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEF 728 (876)
T ss_dssp HHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhH
Confidence 99999999999999999999999999876 567899999999999988776543
No 4
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=100.00 E-value=5.9e-47 Score=434.27 Aligned_cols=680 Identities=11% Similarity=0.115 Sum_probs=492.8
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCcHHHHHHHHhcC-CChhHHHHHHHHHHHhhhhhhc------CCCHHH
Q 004960 3 QSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTA-KTPNVRQLAAVLLRKKITGHWA------KLSPQL 75 (721)
Q Consensus 3 ~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~-~~~~vr~~a~~~l~~~i~~~w~------~~~~~~ 75 (721)
+++.++|.+++|||++.| |+++|++++++|+|+..|++++.++ .+..+|++|+++|||.++++|. .++++.
T Consensus 5 ~~l~~~L~~~~spd~~~r--Ae~~L~~~~~~p~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~ 82 (960)
T 1wa5_C 5 ETVAKFLAESVIASTAKT--SERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANN 82 (960)
T ss_dssp HHHHHHHHHTTSGGGHHH--HHHHHHHHHTSTTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHH
T ss_pred HHHHHHHHHhcCCCHHHH--HHHHHHHhhcCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHH
Confidence 579999999999999988 9999999999999999999999774 5789999999999999999998 799999
Q ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhc---
Q 004960 76 KQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQT--- 152 (721)
Q Consensus 76 ~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~--- 152 (721)
+..||+.+++.+.+ .+..+|+.++.+++.|++.++| +.||++++.|.+.+++++...+.+++.++..+++.....
T Consensus 83 k~~ik~~ll~~l~~-~~~~ir~~l~~~ia~ia~~d~p-~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~ 160 (960)
T 1wa5_C 83 VELIKKEIVPLMIS-LPNNLQVQIGEAISSIADSDFP-DRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRS 160 (960)
T ss_dssp HHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCC
T ss_pred HHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHhhCc-cchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999997 4699999999999999999999 599999999999999988889999999999999865321
Q ss_pred ----------ccccHHHHHHHHH---HhhCCCCC--HHHH------HHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHH
Q 004960 153 ----------FRPHFADMQALLL---KCLQDETS--NRVR------IAALKAIGSFLEFTNDGAEVVKFREFIPSILNVS 211 (721)
Q Consensus 153 ----------~~~~~~~l~~~l~---~~l~~~~~--~~vr------~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l 211 (721)
+....+.++..+. ++++++.. ..++ ..+++++..+....-.......+..+++.++..+
T Consensus 161 ~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 240 (960)
T 1wa5_C 161 DELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYL 240 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 1122233333332 23554222 1233 3355555554322211111112233333333322
Q ss_pred HHHhh--cCC---------HHHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHhhc---CCCCChHHHHHHHHHHHHHH
Q 004960 212 RQCLA--SGE---------EDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSS---SHNLEPNTRHQAIQIISWLA 277 (721)
Q Consensus 212 ~~~l~--~~~---------~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~r~~a~~~l~~l~ 277 (721)
..... ..+ +.+++.+++++..+++..+..+.++++.+++.+++.+. +...++.++..++++|..++
T Consensus 241 ~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~ 320 (960)
T 1wa5_C 241 SYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVT 320 (960)
T ss_dssp SCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHH
T ss_pred cCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHh
Confidence 11000 001 24678999999999998888888999999988887664 23457789999999999998
Q ss_pred HHhHh--hhhhcCChHHHH-HHHHhhhccCCCCC----------------CCCCCcHHHHHHHHHHHHHHHcCccccHhH
Q 004960 278 KYKYN--SLKKHKLVIPIL-QVMCPLLAESNEAG----------------EDDDLAPDRAAAEVIDTMALNLAKHVFPPV 338 (721)
Q Consensus 278 ~~~~~--~~~~~~~~~~il-~~l~~~l~~~~~~~----------------~~~~~~~~~~a~~~l~~l~~~~~~~~~~~i 338 (721)
+.... .++..+++..++ ..+++.+...++|. +++.+++|.+|..++..++..+++.+++.+
T Consensus 321 ~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~v~~~~ 400 (960)
T 1wa5_C 321 RIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLVTNIF 400 (960)
T ss_dssp TSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred CcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchhHHHHH
Confidence 65432 222224677787 67888775432211 234568999999999999999998888889
Q ss_pred HHHHHhhhc------CCChhhHhHHHHHHHHHhhcc---HHHHHH-----hHHHH-HHHHHhhcCCC---CHhHHHHHHH
Q 004960 339 FEFASVSCQ------NASPKYREAAVTAIGIISEGC---AEWMKE-----KLESV-LHIVLGALRDP---EQFVRGAASF 400 (721)
Q Consensus 339 ~~~l~~~l~------~~~~~~r~~al~~l~~i~~~~---~~~~~~-----~l~~i-~~~l~~~l~d~---~~~vr~~a~~ 400 (721)
++++.+.+. +++|+.|++|+.++|+++++. ...... .+..+ ...+.+.+.|+ +|.||.+|+|
T Consensus 401 l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~ 480 (960)
T 1wa5_C 401 LAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIK 480 (960)
T ss_dssp HHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHH
T ss_pred HHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHH
Confidence 999888776 789999999999999998642 111110 22232 23455556666 9999999999
Q ss_pred HHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhh-----------hhccccchHHHHHHHHHhh
Q 004960 401 ALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDM-----------GEEILPFLDPLMGKLLAAL 469 (721)
Q Consensus 401 ~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~-----------~~~~~~~~~~i~~~l~~~l 469 (721)
++|++++++.+ +++..+++.+++.+.+++..|+..|+.||.++++.. +..+.||++.+++.|..++
T Consensus 481 ~lg~~~~~~~~---~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll 557 (960)
T 1wa5_C 481 YIYTFRNQLTK---AQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALI 557 (960)
T ss_dssp HHHHTGGGSCH---HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHH
T ss_pred HHHHHHhhCCH---HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHH
Confidence 99999998853 578999999999999988999999999999999742 4568899999999999999
Q ss_pred cCCC-----hhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHhcc--CchhhhhHHHHHHHHHHHHHhhchhhccC
Q 004960 470 ENSP-----RNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLT--NDEDLRSRARATELLGLVAESVGRARMEP 542 (721)
Q Consensus 470 ~~~~-----~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~--~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 542 (721)
+... ....+.++.+++.++...++.+.||++.+++.+...+... +.++...+..++++++.++...+++.+.+
T Consensus 558 ~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~ 637 (960)
T 1wa5_C 558 LKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPL 637 (960)
T ss_dssp HTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHH
T ss_pred HhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHH
Confidence 8751 1245789999999999999999999999999988887652 23345566778999999998877777888
Q ss_pred ChHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHcccCcccchhhhHHHHH--hhccCCCCCccCCCCCccccccCCCCC
Q 004960 543 ILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAF--SSCNLDDGSAVDIDGSDDENINGFGGV 620 (721)
Q Consensus 543 ~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (721)
+.+.+++.+...++.+..++..+++..++.+.... ..+.+|+..+.|.++ ...+.. +...++.+..+.-+...+..
T Consensus 638 ~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~L~~~~~~~~~~ 715 (960)
T 1wa5_C 638 LVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS-ATIPESIKPLAQPLLAPNVWELK-GNIPAVTRLLKSFIKTDSSI 715 (960)
T ss_dssp HHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC-SSCCTTTGGGHHHHTSGGGGCCT-TTHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHcCHHHhcCC-CCchhHHHHHHHHHHhChHH
Confidence 88899998888887766788899999999998877 789999999999998 444322 21110000000000000000
Q ss_pred CCCchhhhhcccccee--eecchhhhHHHHHHHHHHHHHHcccc-ccchHHHHHHHHHhcccCC-ChhHHHHHHHHHHHH
Q 004960 621 SSDDEAHCERSVRNIS--VRTGVLDEKAAATQALGLFALHTKSS-YAPFLEESLKILVRHASYF-HEDVRYQAVFALKNI 696 (721)
Q Consensus 621 ~~~~~~~~~~~~~~~~--~~~~~~~~k~~a~~~l~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~-~~~vr~~a~~~l~~l 696 (721)
+.. .+.....+. +.+. ..+..|+.+++.++..+++. +.||++.+++.+.+.+... .+..++..+..+..+
T Consensus 716 ~~~----~~~~l~~~~~~~~~~--~~~~~a~~ll~~i~~~~~~~~~~~yl~~i~~~l~~~l~~~~~~~~~~~~l~~~~~~ 789 (960)
T 1wa5_C 716 FPD----LVPVLGIFQRLIASK--AYEVHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLI 789 (960)
T ss_dssp CSC----SHHHHHHHHHHHTCT--TTHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSSCCHHHHHHHHHHHHHH
T ss_pred HHH----HHHHHHHHHHHhCCC--cccchHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHH
Confidence 000 000000000 0011 13489999999999999988 9999999999999987654 466665555555444
Q ss_pred H
Q 004960 697 L 697 (721)
Q Consensus 697 ~ 697 (721)
+
T Consensus 790 ~ 790 (960)
T 1wa5_C 790 S 790 (960)
T ss_dssp H
T ss_pred H
Confidence 3
No 5
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=100.00 E-value=1.5e-42 Score=400.74 Aligned_cols=654 Identities=16% Similarity=0.173 Sum_probs=484.6
Q ss_pred hHHHHHHHHh-cCCChHHHHHHHHHHHHHhcCCCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhcCCCHHHHHHHHH
Q 004960 3 QSLELLLIQF-LMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQ 81 (721)
Q Consensus 3 ~~l~~ll~~~-~s~d~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i~~ 81 (721)
+++.++++.+ .++|++.|++|+++|++++++|+++..+..++.++.++.+|++|+++|++.++++|..++++.+..||+
T Consensus 24 ~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~p~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~ 103 (963)
T 2x19_B 24 ENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQPDKVPEIQYFGASALHIKISRYWSDIPTDQYESLKA 103 (963)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHSTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCHHhCCHHHHHHHHH
Confidence 5788889884 568999999999999999999999999999998778999999999999999999999999999999999
Q ss_pred HHHHHHhhcC--CHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccC-----CcHHHHHHHHHHHHHhhhhh-----
Q 004960 82 SLIESITLEH--SAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQS-----EQEEHREVALILFSSLTETI----- 149 (721)
Q Consensus 82 ~ll~~l~~e~--~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~-----~~~~~~~~al~~l~~i~~~~----- 149 (721)
.+++.+.+.. ++.+|++++.+++.|+..++|. .||++++.+.+.+++ +++..+..++.++..+++..
T Consensus 104 ~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~-~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~ 182 (963)
T 2x19_B 104 QLFTQITRFASGSKIVLTRLCVALASLALSMMPD-AWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRL 182 (963)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTT-TSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCcc-ccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccC
Confidence 9999998643 6899999999999999999985 799999999999976 35667889999999988653
Q ss_pred --------hhcccccHHHHHHHHHHhhCCCCCH-HHHHHHHHHHHHhhh-------------------------------
Q 004960 150 --------GQTFRPHFADMQALLLKCLQDETSN-RVRIAALKAIGSFLE------------------------------- 189 (721)
Q Consensus 150 --------~~~~~~~~~~l~~~l~~~l~~~~~~-~vr~~a~~~l~~l~~------------------------------- 189 (721)
.+.+...++.+++.+.+++++..+. .++..+++|+..++.
T Consensus 183 ~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~~~~~~ll~~l~~~l~~~~~~~~a~~~ 262 (963)
T 2x19_B 183 PQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQDCEALIQAAFAALQDSELFDSSVEA 262 (963)
T ss_dssp ---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCCGGGTHHHHHHHHHHTTSTTTHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHhCCchHHHHHHHH
Confidence 1233456788888888888653222 366666666654332
Q ss_pred ------hcCChhhHHHHHhhHHHHHHHH---HHHhhcCCHHHHHHHHHHHHHHhcCcccchh------hhHHHHHHHHHH
Q 004960 190 ------FTNDGAEVVKFREFIPSILNVS---RQCLASGEEDVAVIAFEIFDELIESPAPLLG------DSVKSIVHFSLE 254 (721)
Q Consensus 190 ------~~~~~~~~~~~~~~l~~ll~~l---~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~------~~~~~l~~~~~~ 254 (721)
....+.....+..+++.++... ......++.+.....++.+..+++..+..+. +.+..+++.++.
T Consensus 263 l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ll~ 342 (963)
T 2x19_B 263 IVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMF 342 (963)
T ss_dssp HHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHHHHHHH
Confidence 1100000111223333333321 1123345666777778888887765544332 556677888877
Q ss_pred hhcCC---CCChHHHHHHHHHHHHHHHHh--------Hhhh-hhcCChHHHHHHHHhhhccCCCCC-----CC--CCC-c
Q 004960 255 VSSSH---NLEPNTRHQAIQIISWLAKYK--------YNSL-KKHKLVIPILQVMCPLLAESNEAG-----ED--DDL-A 314 (721)
Q Consensus 255 ~~~~~---~~~~~~r~~a~~~l~~l~~~~--------~~~~-~~~~~~~~il~~l~~~l~~~~~~~-----~~--~~~-~ 314 (721)
+..++ ..++.+...++++|..+++.. +... .-.+++..+++.+++.+..+++++ +| +++ +
T Consensus 343 ~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~ 422 (963)
T 2x19_B 343 CTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRI 422 (963)
T ss_dssp HHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHH
T ss_pred HHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHH
Confidence 76652 225667889999999998732 1110 001456677777777776443321 11 122 3
Q ss_pred HHHHHHHHHHHHHHHcCccccHhHHHHHHhhh----cCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCC
Q 004960 315 PDRAAAEVIDTMALNLAKHVFPPVFEFASVSC----QNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDP 390 (721)
Q Consensus 315 ~~~~a~~~l~~l~~~~~~~~~~~i~~~l~~~l----~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~ 390 (721)
.|.++.+++..++...++.+++.+++.+.+.+ .+.+|..|+++++++|.+++++.+...+.++.+++.+. .+.++
T Consensus 423 ~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~-~l~~~ 501 (963)
T 2x19_B 423 YRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIP-RISIS 501 (963)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGG-GSCCC
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHH-hCCCC
Confidence 46778889999998888778888888888777 67899999999999999999876544456777787544 44557
Q ss_pred CHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhc
Q 004960 391 EQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALE 470 (721)
Q Consensus 391 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~ 470 (721)
++.||..+++++|++++++... .++++.+++.+++.+++ +.|+..|+.++.++++.++..+.||++.+++.+..++.
T Consensus 502 ~~~vr~~~~~~l~~~~~~l~~~-~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~ 578 (963)
T 2x19_B 502 NVQLADTVMFTIGALSEWLADH-PVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLM 578 (963)
T ss_dssp SHHHHHHHHHHHHHTHHHHHHC-HHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 9999999999999999987642 36889999999999976 78999999999999999999999999999999999988
Q ss_pred CC--ChhHHHHHHHHHHHHHHHhh-hcchhhHHHHHHHHHHHHhc----cCchh-hhhHHHHHHHHHHHHHhhchh----
Q 004960 471 NS--PRNLQETCMSAIGSVAAAAE-QAFIPYAERVLELLKIFMVL----TNDED-LRSRARATELLGLVAESVGRA---- 538 (721)
Q Consensus 471 ~~--~~~v~~~~l~~l~~l~~~~~-~~~~~~~~~i~~~l~~~l~~----~~~~~-~~~~~~~~~~l~~l~~~~~~~---- 538 (721)
.. +...+..++++++.++...+ +.+.+|++.+++.+...++. ..+++ ...+...+++++.+++.++..
T Consensus 579 ~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~ 658 (963)
T 2x19_B 579 KQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHED 658 (963)
T ss_dssp TTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC-
T ss_pred cCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccc
Confidence 63 57889999999999998776 78889999999887776643 11222 233456789998888877631
Q ss_pred -----------------hccCChHHHHHHHHhccC--CCChhhHHHHHHHHHHHHHHcccCcccchhhhHHHHHhhccCC
Q 004960 539 -----------------RMEPILPPFVEAAISGFG--LEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLD 599 (721)
Q Consensus 539 -----------------~~~~~~~~i~~~l~~~l~--~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~ 599 (721)
.+.++...+++.+...++ ..++++.+.++.+++.++..+|+++.||+|.+++.++......
T Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 738 (963)
T 2x19_B 659 DHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTI 738 (963)
T ss_dssp --------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHS
T ss_pred cccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcC
Confidence 123345666666655543 2467899999999999999999999999999999988643210
Q ss_pred CCCccCCCCCccccccCCCCCCCCchhhhhccccceeeecchhhhHHHHHHHHHHHHHHc--cccccchHHHHHHHHHhc
Q 004960 600 DGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHT--KSSYAPFLEESLKILVRH 677 (721)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~ 677 (721)
. -...+.+++.++..+ ++.+.+++..++..+...
T Consensus 739 ~--------------------------------------------~~~~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~ 774 (963)
T 2x19_B 739 P--------------------------------------------QASALDLTRQLVHIFAHEPAHFPPIEALFLLVTSV 774 (963)
T ss_dssp C--------------------------------------------CHHHHHHHHHHHHHHTTCTTTCHHHHHHHHHHHHH
T ss_pred C--------------------------------------------ccHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHH
Confidence 0 034667777777733 334566666555544443
Q ss_pred ----cc-C--CChhHHHHHHHHHHHHHHHHHHhcc
Q 004960 678 ----AS-Y--FHEDVRYQAVFALKNILTAAHAIFQ 705 (721)
Q Consensus 678 ----~~-~--~~~~vr~~a~~~l~~l~~~~~~~~~ 705 (721)
+. + .++++|......+..+++.+....-
T Consensus 775 ~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~ 809 (963)
T 2x19_B 775 TLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFL 809 (963)
T ss_dssp HHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHc
Confidence 22 3 3689999999999999988776653
No 6
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=100.00 E-value=4.6e-43 Score=404.45 Aligned_cols=652 Identities=13% Similarity=0.125 Sum_probs=454.7
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHH
Q 004960 3 QSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQS 82 (721)
Q Consensus 3 ~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i~~~ 82 (721)
+++.++++.+++||++.|++|+++|++++++|+++..+.+++.++.++++|++|+++|++.++++|..++++.+..+|+.
T Consensus 7 ~~l~~~l~~~~~~d~~~r~~A~~~L~~~~~~p~~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ 86 (971)
T 2x1g_F 7 ARLEEAVVSFYRSNSQNQAITHEWLTDAEASPQAWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQK 86 (971)
T ss_dssp ----CTHHHHHTSTTTC----CHHHHHTTTSTHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHH
Confidence 56788888899999999999999999999999999999999987789999999999999999999999999999999999
Q ss_pred HHHHHhhcC--CHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCC------cHHHHHHHHHHHHHhhhhhh----
Q 004960 83 LIESITLEH--SAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSE------QEEHREVALILFSSLTETIG---- 150 (721)
Q Consensus 83 ll~~l~~e~--~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~------~~~~~~~al~~l~~i~~~~~---- 150 (721)
+++.+.+.. ++.+|+.++.+++.|+..++| .||++++.+.+.++++ ++..+..++.++..+++...
T Consensus 87 ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p--~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~ 164 (971)
T 2x1g_F 87 ILESIVRFAGGPKIVLNRLCISLGAYIVHMLG--EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHT 164 (971)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC--C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc--cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCc
Confidence 999998643 789999999999999999998 8999999999999875 56788899999998886531
Q ss_pred --------hcccccHHHHHHHHHHhhCCCCC-------HHHHHHHHHHHHHhhh--hcCCh-------------------
Q 004960 151 --------QTFRPHFADMQALLLKCLQDETS-------NRVRIAALKAIGSFLE--FTNDG------------------- 194 (721)
Q Consensus 151 --------~~~~~~~~~l~~~l~~~l~~~~~-------~~vr~~a~~~l~~l~~--~~~~~------------------- 194 (721)
+.+...++.+++.+.+++++..+ ..++..+++|+..++. +.+..
T Consensus 165 ~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~~~~~ll~~l~~L~~~~~~~ 244 (971)
T 2x1g_F 165 SVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIEGCVTITAVLLEVVHKCYWP 244 (971)
T ss_dssp SSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCccccccHHHHHHhhhhhhccc
Confidence 22344567777777777753122 2678888888877655 22110
Q ss_pred -------------h---------------------hHHHHHhhHHHHHHHHHHH---hhcCC---HHHHHHHHHHHHHHh
Q 004960 195 -------------A---------------------EVVKFREFIPSILNVSRQC---LASGE---EDVAVIAFEIFDELI 234 (721)
Q Consensus 195 -------------~---------------------~~~~~~~~l~~ll~~l~~~---l~~~~---~~~~~~a~~~l~~l~ 234 (721)
. ....+..++|.+++..... +.+++ ++.....++.+..++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~ 324 (971)
T 2x1g_F 245 CIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSV 324 (971)
T ss_dssp SCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHH
T ss_pred cccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 0 0011223344444433222 23334 267777788888887
Q ss_pred cCcccchh-----------hhHHHHHHHHHHhhcCC---CCChHHHHHHHHHHHHHHHHhH--------hhhh--hcCCh
Q 004960 235 ESPAPLLG-----------DSVKSIVHFSLEVSSSH---NLEPNTRHQAIQIISWLAKYKY--------NSLK--KHKLV 290 (721)
Q Consensus 235 ~~~~~~~~-----------~~~~~l~~~~~~~~~~~---~~~~~~r~~a~~~l~~l~~~~~--------~~~~--~~~~~ 290 (721)
+..+..+. +++..+++.++....+. ..++++...++++|..+++... .... -.+++
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~ 404 (971)
T 2x1g_F 325 ERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLY 404 (971)
T ss_dssp HHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 65544332 45666777777765441 1256789999999999886221 0000 01346
Q ss_pred HHHHHHHHhhhccCCCCCCCC--------CCcHHHHHHHHHHHHHHHcCccccHhHHHHHHhhhcC-----CChhhHhHH
Q 004960 291 IPILQVMCPLLAESNEAGEDD--------DLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQN-----ASPKYREAA 357 (721)
Q Consensus 291 ~~il~~l~~~l~~~~~~~~~~--------~~~~~~~a~~~l~~l~~~~~~~~~~~i~~~l~~~l~~-----~~~~~r~~a 357 (721)
..+++.++..+..+++++.++ ..+.|+++.+++..++...++.+++.+++.+.+.+.+ .+|+.|+++
T Consensus 405 ~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaa 484 (971)
T 2x1g_F 405 AHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEAC 484 (971)
T ss_dssp HHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHH
T ss_pred HHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHH
Confidence 667777777765443321111 1245677888999888888877888888888877654 799999999
Q ss_pred HHHHHHHhhccHHHHHHhHHHHHHHHHhhcC-CCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHH
Q 004960 358 VTAIGIISEGCAEWMKEKLESVLHIVLGALR-DPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVK 436 (721)
Q Consensus 358 l~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~ 436 (721)
+.+++.+++++.+...+.++.+++.+..... |+++.||..+++++|++++++... .++++.+++.+++.+ + +.|+
T Consensus 485 l~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~-~~~l~~vl~~l~~~l-~--~~v~ 560 (971)
T 2x1g_F 485 IYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMEN-PAYIPPAINLLVRGL-N--SSMS 560 (971)
T ss_dssp HHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHH-H--SSCH
T ss_pred HHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHh-C--hHHH
Confidence 9999999999887666778888884444332 579999999999999999998753 378999999999999 3 6899
Q ss_pred HHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCC--ChhHHHHHHHHHHHHHHHhh-hcchhhHHHHHHHHHHHHhc-
Q 004960 437 EKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENS--PRNLQETCMSAIGSVAAAAE-QAFIPYAERVLELLKIFMVL- 512 (721)
Q Consensus 437 ~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~--~~~v~~~~l~~l~~l~~~~~-~~~~~~~~~i~~~l~~~l~~- 512 (721)
..|+.++.++++.++..+.||++.+++.+.+++..+ +...+..++++++.++...+ +...+|+..+++.+...++.
T Consensus 561 ~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~ 640 (971)
T 2x1g_F 561 AQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAI 640 (971)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999884 57889999999999998765 66777877776666554432
Q ss_pred ---cC-ch-hhhhHHHHHHHHHHHHHhhch------------hhccCChHHHHHHHHhccCC--CChhhHHHHHHHHHHH
Q 004960 513 ---TN-DE-DLRSRARATELLGLVAESVGR------------ARMEPILPPFVEAAISGFGL--EFSELREYTHGFFSNI 573 (721)
Q Consensus 513 ---~~-~~-~~~~~~~~~~~l~~l~~~~~~------------~~~~~~~~~i~~~l~~~l~~--~~~~~~~~~~~~l~~l 573 (721)
.. ++ +......++++++.+...++. +.+.++.+.+++.+...++. .+.++.+.++.+++++
T Consensus 641 ~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~ 720 (971)
T 2x1g_F 641 CQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHA 720 (971)
T ss_dssp HTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 11 11 111222345555555554442 23445567777777666542 3678999999999999
Q ss_pred HHHcccCcccchhhhHHHHHhhccCCCCCccCCCCCccccccCCCCCCCCchhhhhccccceeeecchhhhHHHHHHHHH
Q 004960 574 AGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALG 653 (721)
Q Consensus 574 ~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~ 653 (721)
+..+|.++.||++.+++.++...+..+ . ..++++++
T Consensus 721 ~~~~~~~~~p~l~~~~~~l~~~~~~~~-------------------------------------------~-~~~l~l~~ 756 (971)
T 2x1g_F 721 ITNLRSSFQPMLQDLCLFIVASFQTRC-------------------------------------------C-APTLEISK 756 (971)
T ss_dssp HHHHHC--CTHHHHHHHHHHHHCC--C-------------------------------------------C-HHHHHHHH
T ss_pred HHhhhhhccccHHHHHHHHHHHHhcCC-------------------------------------------c-hHHHHHHH
Confidence 999999999999999999986653210 0 34778888
Q ss_pred HHHHHcccc--cc----chHHHHHHHHHhcccC-------CChhHHHHHHHHHHHHHHHHHHhc
Q 004960 654 LFALHTKSS--YA----PFLEESLKILVRHASY-------FHEDVRYQAVFALKNILTAAHAIF 704 (721)
Q Consensus 654 ~~~~~~~~~--~~----~~~~~~~~~l~~~~~~-------~~~~vr~~a~~~l~~l~~~~~~~~ 704 (721)
.++..+|.. +. +.+..+...+..++.. .++++++.....+..+++.....+
T Consensus 757 ~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~ 820 (971)
T 2x1g_F 757 TAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVL 820 (971)
T ss_dssp HHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGG
T ss_pred HHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHH
Confidence 887777652 33 3333333433333322 267888888888888877665544
No 7
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=100.00 E-value=7.1e-42 Score=395.37 Aligned_cols=678 Identities=13% Similarity=0.151 Sum_probs=486.2
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhcCCCHHHHHHHHH
Q 004960 2 AQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQ 81 (721)
Q Consensus 2 ~~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i~~ 81 (721)
.+++.++++.+++|+++.|++|+++|++++++|+++..+.+++.++.++.+|++|+++||+.++++|..++++.+..||+
T Consensus 15 ~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~p~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~ 94 (1049)
T 3m1i_C 15 IALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIRN 94 (1049)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSTTGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHhCchHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHH
Confidence 46789999999999999999999999999999999999999998888999999999999999999999999999999999
Q ss_pred HHHHHHhhcC--------CHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhh---
Q 004960 82 SLIESITLEH--------SAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIG--- 150 (721)
Q Consensus 82 ~ll~~l~~e~--------~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~--- 150 (721)
.+++.+.+.+ ++.+|+.++.+++.|+..++| +.||++++.+.+.++ .+...+..++.++..+++...
T Consensus 95 ~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p-~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~ 172 (1049)
T 3m1i_C 95 FVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP-QNWPEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFS 172 (1049)
T ss_dssp HHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhc
Confidence 9999998643 478999999999999999999 599999999999997 456667888889988887643
Q ss_pred -------------hcccccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhH--------------------
Q 004960 151 -------------QTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEV-------------------- 197 (721)
Q Consensus 151 -------------~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~-------------------- 197 (721)
+.+...++.+++.+.+++++..+..++..+++++..++.|.+.+...
T Consensus 173 ~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l~~~~~~~ 252 (1049)
T 3m1i_C 173 AEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMTSPDTRA 252 (1049)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHHSHHHHH
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhCCCHhHHH
Confidence 22344567778888888876467788999999998887776522100
Q ss_pred ----------------------HHHHhhHHHHHHHHHH-----------Hh---hcCCHHHHHHHHHHHHHHhcCc----
Q 004960 198 ----------------------VKFREFIPSILNVSRQ-----------CL---ASGEEDVAVIAFEIFDELIESP---- 237 (721)
Q Consensus 198 ----------------------~~~~~~l~~ll~~l~~-----------~l---~~~~~~~~~~a~~~l~~l~~~~---- 237 (721)
..+..+++.+++.+.. .. .+.+.+.....++.+..+++..
T Consensus 253 ~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~ 332 (1049)
T 3m1i_C 253 ITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALL 332 (1049)
T ss_dssp HHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 0001111222222111 00 1112333344445554443321
Q ss_pred --ccchhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHh---Hh-hhhhcCChHHHHHHHHhhhccCCCCC---
Q 004960 238 --APLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYK---YN-SLKKHKLVIPILQVMCPLLAESNEAG--- 308 (721)
Q Consensus 238 --~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~---~~-~~~~~~~~~~il~~l~~~l~~~~~~~--- 308 (721)
++.+.+++..+++.++.+...+ ++++...++++|..+++.. +. .-.-.+++..+++.+++.+..+++++
T Consensus 333 ~~~~~~~~~l~~~l~~ll~~~~~~--d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~ 410 (1049)
T 3m1i_C 333 ESDESLRELLLNAHQYLIQLSKIE--ERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVE 410 (1049)
T ss_dssp HSCGGGHHHHHHHHHHHHHHHTSS--CHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEE
T ss_pred cCChhhHHHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeee
Confidence 1123556677788887776655 7789999999999999832 11 10111356777888888876543221
Q ss_pred ------------CCCCCcHHHHHHHHHHHHHHHcCccccHhHHHHHHhhhc--CCChhhHhHHHHHHHHHhhccHHHHH-
Q 004960 309 ------------EDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQ--NASPKYREAAVTAIGIISEGCAEWMK- 373 (721)
Q Consensus 309 ------------~~~~~~~~~~a~~~l~~l~~~~~~~~~~~i~~~l~~~l~--~~~~~~r~~al~~l~~i~~~~~~~~~- 373 (721)
++|+++.++++..++..++...+..+++.+.+.+.+.+. +.+|+.|+++++++|++++++.....
T Consensus 411 dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~ 490 (1049)
T 3m1i_C 411 NDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEK 490 (1049)
T ss_dssp CTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHH
T ss_pred CCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhH
Confidence 011235577888999999988777788888888888775 46899999999999999988765533
Q ss_pred HhHHHHHHHHHhhcC-----CCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHH
Q 004960 374 EKLESVLHIVLGALR-----DPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCE 448 (721)
Q Consensus 374 ~~l~~i~~~l~~~l~-----d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~ 448 (721)
.+++.+++.+..... |+++.||..++|++|++++++... .++++.+++.+++.+.+++++|+..||.++.++++
T Consensus 491 ~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~-~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~ 569 (1049)
T 3m1i_C 491 RFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAH-WNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQ 569 (1049)
T ss_dssp HHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHC-HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 447788887776442 467888888999999999987642 46889999999999999899999999999999999
Q ss_pred hhhhccc--------cchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhh--hcchhhHHHHHHHHHHHHhc------
Q 004960 449 DMGEEIL--------PFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAE--QAFIPYAERVLELLKIFMVL------ 512 (721)
Q Consensus 449 ~~~~~~~--------~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~--~~~~~~~~~i~~~l~~~l~~------ 512 (721)
.++..+. ||++.+++.+..++...+..-...++++++.++...+ +...+|+..+++.+...+..
T Consensus 570 ~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 649 (1049)
T 3m1i_C 570 KCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQST 649 (1049)
T ss_dssp HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9887664 9999999999999988777677889999999998877 35778888877765544321
Q ss_pred cCch---hhh-hH--HHHHHHHHHHHHhhchhhccCC-------------------------------------------
Q 004960 513 TNDE---DLR-SR--ARATELLGLVAESVGRARMEPI------------------------------------------- 543 (721)
Q Consensus 513 ~~~~---~~~-~~--~~~~~~l~~l~~~~~~~~~~~~------------------------------------------- 543 (721)
.+.. +.. .+ ...++|++.++.++|+ .|.|+
T Consensus 650 ~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~-~f~p~~~~i~~~~l~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~ 728 (1049)
T 3m1i_C 650 ANPTLLLDSETVKIIANIIKTNVAVCTSMGA-DFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIK 728 (1049)
T ss_dssp HCGGGGGSHHHHHHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHH
T ss_pred hchhhhcCHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchhhhhHHHHHHHHHH
Confidence 0100 111 11 2334555555555443 33222
Q ss_pred ------------------------hHHHHHHHHhccCCCChhhH-HHHHHHHHHHHHHcccCcccchhhhHHHHHhhccC
Q 004960 544 ------------------------LPPFVEAAISGFGLEFSELR-EYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNL 598 (721)
Q Consensus 544 ------------------------~~~i~~~l~~~l~~~~~~~~-~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~ 598 (721)
++.+++.++..++...+..| ..++.+++.++..+|..+.+|++.+++.++.+.-.
T Consensus 729 ~~l~~ll~~~~~~~~~l~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~l~~~ii~~~~~~~~~~l~~i~~~l~~~~~~ 808 (1049)
T 3m1i_C 729 KEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLD 808 (1049)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHHHSCGGGCCTHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 23333333332211111100 23778888888888988889999888888765310
Q ss_pred CCCCccCCCCCccccccCCCCCCCCchhhhhccccceeeecchhhhHHHHHHHHHHHHHHccccccc---h-HHHHHHHH
Q 004960 599 DDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAP---F-LEESLKIL 674 (721)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~~~~~~~---~-~~~~~~~l 674 (721)
.+.++ -+..++.|.....+++.++.+++..+.+ . +..+++..
T Consensus 809 ------~i~~~----------------------------~~~~pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~v~~~~ 854 (1049)
T 3m1i_C 809 ------MINKD----------------------------FTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAI 854 (1049)
T ss_dssp ------HHSSC----------------------------SSSSHHHHHHHHHHHHHHHHHCTHHHHHSCHHHHHHHHHHH
T ss_pred ------HHhcc----------------------------hhhCHHHHHHHHHHHHHHHHhCHHHHHcCCHHHHHHHHHHH
Confidence 00000 0123578999999999999999987653 2 67788888
Q ss_pred HhcccCCChhHHHHHHHHHHHHHHHHHHhcccCCcchhHHHHHhh
Q 004960 675 VRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNVSLCYHFFLLS 719 (721)
Q Consensus 675 ~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 719 (721)
...+.+.+..+.+++++.+..++.......+.+.....|+.|+.+
T Consensus 855 ~~al~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~f~~~~~~~ 899 (1049)
T 3m1i_C 855 CWAFKHNNRDVEVNGLQIALDLVKNIERMGNVPFANEFHKNYFFI 899 (1049)
T ss_dssp HHHHTCCSHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHH
T ss_pred HHHhCCCCchHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 888889999999999999999999876522212244456666554
No 8
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=100.00 E-value=2.6e-39 Score=363.45 Aligned_cols=670 Identities=13% Similarity=0.167 Sum_probs=475.8
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHH
Q 004960 3 QSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQS 82 (721)
Q Consensus 3 ~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i~~~ 82 (721)
+.+.+++..+++|+++.|++|+++|++++++|+++..+..++.++.++.+|++|+++|++.++++|..++++.+..||+.
T Consensus 16 ~~Le~av~~ly~p~~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W~~L~~e~~~~Ir~~ 95 (1023)
T 4hat_C 16 ALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNF 95 (1023)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCTTGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHcCccHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999987778999999999999999999999999999999999
Q ss_pred HHHHHhhc---C-----CHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhh---
Q 004960 83 LIESITLE---H-----SAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQ--- 151 (721)
Q Consensus 83 ll~~l~~e---~-----~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~--- 151 (721)
+++.+.+. + .+.++++++.+++.|+.+++|. .||++++.+.+.++++ +.....++.++..+.+...+
T Consensus 96 Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~-~Wp~~l~dL~~~l~~~-~~~~~~~L~iL~~L~EEV~~~~~ 173 (1023)
T 4hat_C 96 VVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQ-NWPEFIPELIGSSSSS-VNVCENNMIVLKLLSEEVFDFSA 173 (1023)
T ss_dssp HHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTT-TCTTHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChh-hchHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHhhh
Confidence 99988642 1 4778999999999999999995 8999999999999754 45677888888888876421
Q ss_pred -------------cccccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHH-HHHHHHhhc
Q 004960 152 -------------TFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSIL-NVSRQCLAS 217 (721)
Q Consensus 152 -------------~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll-~~l~~~l~~ 217 (721)
.+...++.+++.+.+.+.+..++.+...+++++..++.|.+-.. . .-.++++.++ . ++
T Consensus 174 ~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~-i-~~~~ll~~l~~~----~L-- 245 (1023)
T 4hat_C 174 EQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRY-I-YETNILELLSTK----FM-- 245 (1023)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHH-H-HSSSHHHHHHTH----HH--
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHH-h-cchhHHHHHHHH----Hc--
Confidence 22345677888888888764678888999999999999875321 1 1123444444 3 22
Q ss_pred CCHHHHHHHHHHHHHHhcCc--cc--chh---------------------------------------------------
Q 004960 218 GEEDVAVIAFEIFDELIESP--AP--LLG--------------------------------------------------- 242 (721)
Q Consensus 218 ~~~~~~~~a~~~l~~l~~~~--~~--~~~--------------------------------------------------- 242 (721)
++++.+..|++||..++... ++ .+.
T Consensus 246 ~~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~ 325 (1023)
T 4hat_C 246 TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYL 325 (1023)
T ss_dssp HSHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 24556666666666665421 11 011
Q ss_pred --------------hhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhh-hhh---cCChHHHHHHHHhhhccC
Q 004960 243 --------------DSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNS-LKK---HKLVIPILQVMCPLLAES 304 (721)
Q Consensus 243 --------------~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~-~~~---~~~~~~il~~l~~~l~~~ 304 (721)
+.+...+..++.+...+ +.++-..++++|..+++..... .++ .+++..++..++..+..+
T Consensus 326 e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~--d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P 403 (1023)
T 4hat_C 326 ARNRALLESDESLRELLLNAHQYLIQLSKIE--ERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRP 403 (1023)
T ss_dssp HHHGGGGTSCGGGHHHHHHHHHHHHHHTTSS--CHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHhCCcchhHHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 11111111222222222 4455566788888887632110 011 123455666777777766
Q ss_pred CCC----CCCC-----------CCcHHHHHHHHHHHHHHHcCccccHhHHHHHHhhhcC--CChhhHhHHHHHHHHHhhc
Q 004960 305 NEA----GEDD-----------DLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQN--ASPKYREAAVTAIGIISEG 367 (721)
Q Consensus 305 ~~~----~~~~-----------~~~~~~~a~~~l~~l~~~~~~~~~~~i~~~l~~~l~~--~~~~~r~~al~~l~~i~~~ 367 (721)
++. ++++ +....+...++|..+....+++.++.+++.+.+.+.+ .+|+.|+++++++|+++++
T Consensus 404 ~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~ 483 (1023)
T 4hat_C 404 EEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGT 483 (1023)
T ss_dssp TTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTS
T ss_pred cccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcC
Confidence 521 1111 1234445557888887777777778888888777654 6899999999999999998
Q ss_pred cHH-HHHHhHHHHHHHHHhhcC-----CCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHH
Q 004960 368 CAE-WMKEKLESVLHIVLGALR-----DPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYY 441 (721)
Q Consensus 368 ~~~-~~~~~l~~i~~~l~~~l~-----d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~ 441 (721)
+.. ...++++.+++.++.++. |+.+.||..++|++|++++++.. ..++++.++..+++++.+++++|+..||+
T Consensus 484 ~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~-~~~~L~~vl~~L~~~l~~~~~~v~~~A~~ 562 (1023)
T 4hat_C 484 MSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKA-HWNFLRTVILKLFEFMHETHEGVQDMACD 562 (1023)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHH-CHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 764 367889999999998875 46778899999999999999843 35689999999999999988999999999
Q ss_pred HHHHHHHhhhhcc--------ccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhc--chhhHHHHHHHHHHHHh
Q 004960 442 ALAAFCEDMGEEI--------LPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQA--FIPYAERVLELLKIFMV 511 (721)
Q Consensus 442 al~~l~~~~~~~~--------~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~~--~~~~~~~i~~~l~~~l~ 511 (721)
++.++++.++..+ .||++.+++.+...+...+..-+..++++++.++...+.. -..+++.+++.+...++
T Consensus 563 al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~ 642 (1023)
T 4hat_C 563 TFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWD 642 (1023)
T ss_dssp HHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHH
Confidence 9999999987655 5799999999999988878888899999999999988733 34567777766554443
Q ss_pred ccC-----ch------h-hhhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhc-------------------------
Q 004960 512 LTN-----DE------D-LRSRARATELLGLVAESVGRARMEPILPPFVEAAISG------------------------- 554 (721)
Q Consensus 512 ~~~-----~~------~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~------------------------- 554 (721)
... ++ + ...-...++|++.++.++|. .|.|++..+++.+++.
T Consensus 643 ~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~-~f~~~~~~i~~~~l~~y~~~s~~i~~~~~~~g~~~~~~~~~ 721 (1023)
T 4hat_C 643 TIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGA-DFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKV 721 (1023)
T ss_dssp HHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHH
T ss_pred HHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHH
Confidence 210 11 1 11123456777777776665 4555555544444432
Q ss_pred ------------------------------------------cCCCChhhH-HHHHHHHHHHHHHcccCcccchhhhHHH
Q 004960 555 ------------------------------------------FGLEFSELR-EYTHGFFSNIAGVLEDGFAQYLPLVVPL 591 (721)
Q Consensus 555 ------------------------------------------l~~~~~~~~-~~~~~~l~~l~~~~~~~~~~~l~~i~~~ 591 (721)
.+...+..| ..++.+++.++..+|..+.+.++.++..
T Consensus 722 r~~r~ik~~il~l~~~~i~~~~~~~~~~~~~~~~l~~~vl~dY~~~~~~~r~~~vL~l~s~iv~~~~~~~~~~~~~il~~ 801 (1023)
T 4hat_C 722 RGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQS 801 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHHhCChhhccHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 111112222 1234444444555554444444444444
Q ss_pred HHhhccCCCCCccCCCCCccccccCCCCCCCCchhhhhccccceeeecchhhhHHHHHHHHHHHHHHccccccc----hH
Q 004960 592 AFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAP----FL 667 (721)
Q Consensus 592 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~~~~~~~----~~ 667 (721)
++.+.- ..+. +. -...+++|..-.+++..+..++...+.. .+
T Consensus 802 vf~~Tl------~mi~-------------------------~~---~~~~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~ 847 (1023)
T 4hat_C 802 VFECTL------DMIN-------------------------KD---FTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAF 847 (1023)
T ss_dssp HHHHHH------HHHS-------------------------SC---SSSSHHHHHHHHHHHHHHHHHCTHHHHTSCHHHH
T ss_pred HHHHHH------HHHh-------------------------cc---cccChHHHHHHHHHHHHHHHHChHHHHcCCHHHH
Confidence 432210 0000 00 0224678999999999999999887643 57
Q ss_pred HHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHHhcccCCcchhHHHHHhhc
Q 004960 668 EESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNVSLCYHFFLLSC 720 (721)
Q Consensus 668 ~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 720 (721)
..+++.+...+++.+.+|-..+++.+-.+++++....+...+...|++|+++.
T Consensus 848 ~~~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~~~~~~~~~~~~f~~~~~~~~ 900 (1023)
T 4hat_C 848 KLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMGNVPFANEFHKNYFFIF 900 (1023)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 77888899999999999999999999999999987555556778888888765
No 9
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=3.7e-38 Score=361.36 Aligned_cols=648 Identities=16% Similarity=0.153 Sum_probs=504.5
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHhc-------CCCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhcCC--CHHHHH
Q 004960 7 LLLIQFLMPDNDARRQAEDQIKRLAK-------DPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKL--SPQLKQ 77 (721)
Q Consensus 7 ~ll~~~~s~d~~~r~~A~~~L~~~~~-------~p~~~~~l~~il~~~~~~~vr~~a~~~l~~~i~~~w~~~--~~~~~~ 77 (721)
.+++.+.++++..|+++.+.+..+.. .|++++.+++.+.++.++.+|..|...+.......-... -.....
T Consensus 99 ~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~ 178 (861)
T 2bpt_A 99 NALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSN 178 (861)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHH
T ss_pred HHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHH
Confidence 45666678889999999998876532 245677777776554388999999988877765421121 134566
Q ss_pred HHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHccc---cCC-CCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhc
Q 004960 78 LVKQSLIESITLE-HSAPVRRASANVVSIIAKYA---VPA-GEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQT 152 (721)
Q Consensus 78 ~i~~~ll~~l~~e-~~~~vr~~~~~~l~~i~~~~---~~~-~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~ 152 (721)
.+...+.+.+..+ ++..+|..+..+++.+.... ... ..|+.+++.+.+.+.++++..|..++.++..+++..+..
T Consensus 179 ~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~ 258 (861)
T 2bpt_A 179 NILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTF 258 (861)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 7777788887742 28999999999999875421 110 125678999999999999999999999999999998888
Q ss_pred ccccHH-HHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhh------------HHHHHhhHHHHHHHHHHHhhc--
Q 004960 153 FRPHFA-DMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAE------------VVKFREFIPSILNVSRQCLAS-- 217 (721)
Q Consensus 153 ~~~~~~-~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~------------~~~~~~~l~~ll~~l~~~l~~-- 217 (721)
+.+++. .+++.+...+.+ .+..+|..++.++..+++....... ......+++.++..+...+.+
T Consensus 259 ~~~~l~~~l~~~~~~~~~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~ 337 (861)
T 2bpt_A 259 MKPYMEQALYALTIATMKS-PNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQN 337 (861)
T ss_dssp CHHHHHHTHHHHHHHHTTC-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 888888 999999999988 8999999999999888765311000 000122334444444334542
Q ss_pred -----CCHHHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhH-hhhhhcCChH
Q 004960 218 -----GEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKY-NSLKKHKLVI 291 (721)
Q Consensus 218 -----~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~-~~~~~~~~~~ 291 (721)
+++.++..+..++..++...+ ...++.+++.+.+.+.+. +...|..++..++.+++... ..+. ++++
T Consensus 338 ~d~~d~~~~~r~~a~~~L~~l~~~~~---~~~~~~l~~~l~~~l~~~--~~~~r~~a~~~l~~i~~~~~~~~~~--~~l~ 410 (861)
T 2bpt_A 338 EDPEDDDWNVSMSAGACLQLFAQNCG---NHILEPVLEFVEQNITAD--NWRNREAAVMAFGSIMDGPDKVQRT--YYVH 410 (861)
T ss_dssp CC-CCCCCHHHHHHHHHHHHHHHHHG---GGGHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHTSSSSCHHHHH--HHHH
T ss_pred cccccccCcHHHHHHHHHHHHHHHcc---HhHHHHHHHHHHHHcCCC--ChhHHHHHHHHHHHHHcCCCHHHHH--HHHH
Confidence 235788999999999987654 334566667666666554 67899999999998886532 3332 3466
Q ss_pred HHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcC-----ccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhh
Q 004960 292 PILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA-----KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISE 366 (721)
Q Consensus 292 ~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~-----~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~ 366 (721)
.+++.+++.+.+.. ..+|..+..+++.++...+ ...++.+++.+...+.++ +..|.+++.+++.+++
T Consensus 411 ~il~~l~~~l~d~~-------~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~ 482 (861)
T 2bpt_A 411 QALPSILNLMNDQS-------LQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVE 482 (861)
T ss_dssp HHHHHHHHGGGCSC-------HHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCc-------HHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHH
Confidence 77777777775432 6788888899999888764 346788889888888776 8999999999999988
Q ss_pred ccH----HHHHHhHHHHHHHHHhhcC--CCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCC---------
Q 004960 367 GCA----EWMKEKLESVLHIVLGALR--DPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDE--------- 431 (721)
Q Consensus 367 ~~~----~~~~~~l~~i~~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~--------- 431 (721)
.++ ..+.++++.+++.+.+.++ |.++.||..++.+++.++...+....+++..++|.+++.+.+.
T Consensus 483 ~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~ 562 (861)
T 2bpt_A 483 QLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLT 562 (861)
T ss_dssp HHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCC
T ss_pred hcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCC
Confidence 754 4566889999999999997 4458999999999999999988777778888888888776532
Q ss_pred ------ChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCCh-hHHHHHHHHHHHHHHHhhhcchhhHHHHHH
Q 004960 432 ------SDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPR-NLQETCMSAIGSVAAAAEQAFIPYAERVLE 504 (721)
Q Consensus 432 ------~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~-~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~ 504 (721)
...++..++.+|..++...+..+.||++.+++.+...+++.+. .+++.++.+++.++...+..+.+|++.++|
T Consensus 563 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~ 642 (861)
T 2bpt_A 563 LEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSP 642 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3457889999999999999999999999999999999998877 899999999999999999999999999999
Q ss_pred HHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCC--hhhHHHHHHHHHHHHHHcccCcc
Q 004960 505 LLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEF--SELREYTHGFFSNIAGVLEDGFA 582 (721)
Q Consensus 505 ~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~--~~~~~~~~~~l~~l~~~~~~~~~ 582 (721)
.+...++. ++..+|..++.+++.++..+|. .+.++++.+++.+...+++++ +++|..++.+++.++...|..|.
T Consensus 643 ~l~~~l~~---~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~ 718 (861)
T 2bpt_A 643 YLLKALNQ---VDSPVSITAVGFIADISNSLEE-DFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFI 718 (861)
T ss_dssp HHHHHHHC---TTSHHHHHHHHHHHHHHHHTGG-GGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGH
T ss_pred HHHHHhcc---ccHHHHHHHHHHHHHHHHHhch-hccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHH
Confidence 99999853 3445788899999999998875 788999999999999887653 88999999999999999999999
Q ss_pred cchhhhHHHHHhhccCCCCCccCCCCCccccccCCCCCCCCchhhhhccccceeeecchhhhHHHHHHHHHHHHHHcc--
Q 004960 583 QYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTK-- 660 (721)
Q Consensus 583 ~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~~-- 660 (721)
+|++.++|.+++.+....+. + + ++. . ......|..++++++.++..++
T Consensus 719 ~~l~~~l~~l~~~~~~~~~~----~--d-------------~d~-~----------~~~~~vr~~~l~~~~~i~~~l~~~ 768 (861)
T 2bpt_A 719 PYLNDIMALCVAAQNTKPEN----G--T-------------LEA-L----------DYQIKVLEAVLDAYVGIVAGLHDK 768 (861)
T ss_dssp HHHHHHHHHHHHHHTCCCSS----S--S-------------HHH-H----------HHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHhcCCCC----C--C-------------hHH-H----------HHHHHHHHHHHHHHHHHHHHHccC
Confidence 99999999999877543221 0 0 000 0 0113578999999999999887
Q ss_pred -ccccchHHHHHHHHHhcccCC----ChhHHHHHHHHHHHHHHHH-HHhc
Q 004960 661 -SSYAPFLEESLKILVRHASYF----HEDVRYQAVFALKNILTAA-HAIF 704 (721)
Q Consensus 661 -~~~~~~~~~~~~~l~~~~~~~----~~~vr~~a~~~l~~l~~~~-~~~~ 704 (721)
+.+.||++.+++.+.+.+.+. ++.||.+|+.+++.+++++ +..+
T Consensus 769 ~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~ 818 (861)
T 2bpt_A 769 PEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSI 818 (861)
T ss_dssp HHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTT
T ss_pred HHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCchH
Confidence 679999999999999998763 8899999999999999987 4433
No 10
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=3.8e-38 Score=372.56 Aligned_cols=635 Identities=15% Similarity=0.157 Sum_probs=506.2
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHhcCC----------CcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhcCCC
Q 004960 3 QSLELLLIQFLMPDNDARRQAEDQIKRLAKDP----------QVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLS 72 (721)
Q Consensus 3 ~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~p----------~~~~~l~~il~~~~~~~vr~~a~~~l~~~i~~~w~~~~ 72 (721)
.++.++|..+.|+|++.|.+|+..|.+..+.+ .++..+++.+. +.++.+|..|+..|.+... ..+
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~-d~~~~vR~~A~~~L~~l~~----~~~ 80 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE-DKNGEVQNLAVKCLGPLVS----KVK 80 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHT----TSC
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHH----hCC
Confidence 67899999999999999999999997765433 24556777665 5789999999999888664 356
Q ss_pred HHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHccccCCC--------CCcchHHHHHHhcc-CCcHHHHHHHHHHHH
Q 004960 73 PQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAG--------EWPDLLPFLFQFSQ-SEQEEHREVALILFS 143 (721)
Q Consensus 73 ~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~--------~~~~ll~~l~~~l~-~~~~~~~~~al~~l~ 143 (721)
++..+.+++.+++.+.. ++..+|..++.+++.++....+.. .|++++|.+.+.++ ++++..+..|+.+++
T Consensus 81 ~~~~~~i~~~Ll~~l~d-~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~ 159 (1230)
T 1u6g_C 81 EYQVETIVDTLCTNMLS-DKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMA 159 (1230)
T ss_dssp HHHHHHHHHHHHHHTTC-SSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence 67888999999999874 677899999999999987655421 49999999999998 588999999999999
Q ss_pred HhhhhhhhcccccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHH
Q 004960 144 SLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVA 223 (721)
Q Consensus 144 ~i~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~ 223 (721)
.+++..+..+.++.+.+++.+...+.+ +++.+|..|+.+++.++...++.. +..+++.+++.+.. ..++..+
T Consensus 160 ~~~~~~~~~l~~~~~~ll~~l~~~L~~-~~~~vR~~a~~al~~l~~~~~~~~----~~~~l~~l~~~L~~---~~~~~~r 231 (1230)
T 1u6g_C 160 DMLSRQGGLLVNFHPSILTCLLPQLTS-PRLAVRKRTIIALGHLVMSCGNIV----FVDLIEHLLSELSK---NDSMSTT 231 (1230)
T ss_dssp HHHHHTCSSCTTTHHHHHHHHGGGGGC-SSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHH---TCSSCSC
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHhcCHHH----HHHHHHHHHHHhcc---CCchhHH
Confidence 999988888888999999999999998 889999999999999998764321 34566777765433 2234677
Q ss_pred HHHHHHHHHHhcCcccchhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhcc
Q 004960 224 VIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAE 303 (721)
Q Consensus 224 ~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~ 303 (721)
..++++++.++...+..+.++++.+++.++..+.++ ++++|..++.++..+++..+..+. ++++.+++.++..+..
T Consensus 232 ~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~--~~~vR~~a~~~l~~l~~~~~~~~~--~~l~~li~~ll~~l~~ 307 (1230)
T 1u6g_C 232 RTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVD--DDELREYCIQAFESFVRRCPKEVY--PHVSTIINICLKYLTY 307 (1230)
T ss_dssp TTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSC--CTTTHHHHHHHHHHHHHCTTCCCH--HHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHChHHHH--HhHHHHHHHHHHHhCC
Confidence 788999999998877777788888888888877655 677999999999999886554332 3567777777776652
Q ss_pred CC--------------------CCC----------CCCCCcHHHHHHHHHHHHHHHcCc---cccHhHHHHHHhhhcCCC
Q 004960 304 SN--------------------EAG----------EDDDLAPDRAAAEVIDTMALNLAK---HVFPPVFEFASVSCQNAS 350 (721)
Q Consensus 304 ~~--------------------~~~----------~~~~~~~~~~a~~~l~~l~~~~~~---~~~~~i~~~l~~~l~~~~ 350 (721)
.. +++ ++..|.+|.+|..++..++...++ .+++.+++.+...+.+.+
T Consensus 308 d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~ 387 (1230)
T 1u6g_C 308 DPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKERE 387 (1230)
T ss_dssp C------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSS
T ss_pred CCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCc
Confidence 10 000 011367799999999999986663 455667777877888888
Q ss_pred hhhHhHHHHHHHHHhhc-------------------cHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhH
Q 004960 351 PKYREAAVTAIGIISEG-------------------CAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQP 411 (721)
Q Consensus 351 ~~~r~~al~~l~~i~~~-------------------~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 411 (721)
...|.+++.+++.+... +...+..+++.+++.+.+.++|+++.+|..++.+++.++..++.
T Consensus 388 ~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~ 467 (1230)
T 1u6g_C 388 ENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPG 467 (1230)
T ss_dssp SHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchh
Confidence 99999999988887753 23456677888999999999999999999999999999998776
Q ss_pred HHHHhhhhHHHHHHHhccCCCh--HHHHHHHHHHHHHHHhhhhc-cccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q 004960 412 EIVSHYESVLPCILNALEDESD--EVKEKSYYALAAFCEDMGEE-ILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVA 488 (721)
Q Consensus 412 ~~~~~~~~~l~~l~~~l~~~~~--~v~~~a~~al~~l~~~~~~~-~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~ 488 (721)
.+.++++.+++.+++.+.++.. .++..++.++..++...+.. +.||++.+++.+...+.+.+..++..++.+++.++
T Consensus 468 ~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~ 547 (1230)
T 1u6g_C 468 ALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLV 547 (1230)
T ss_dssp TTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence 6667899999999999998864 89999999999998876544 78999999999999999988889999999999999
Q ss_pred HHhhh-------cchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCChh
Q 004960 489 AAAEQ-------AFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSE 561 (721)
Q Consensus 489 ~~~~~-------~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~ 561 (721)
...+. .+.||++.++|.+...+... +.+..+|..++.+++.++...|. .+.++++.+++.+...+.. ..
T Consensus 548 ~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~-d~~~~vr~~a~~~lg~L~~~~g~-~~~~~~~~~l~~L~~~l~~--e~ 623 (1230)
T 1u6g_C 548 KVIRPLDQPSSFDATPYIKDLFTCTIKRLKAA-DIDQEVKERAISCMGQIICNLGD-NLGSDLPNTLQIFLERLKN--EI 623 (1230)
T ss_dssp HHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCS-SSCHHHHHHHHHHHHHHHHHTGG-GCCTHHHHHHHHHHHHTTS--SS
T ss_pred HHhcCcccccccchHHHHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHhCc-hhhhhHHHHHHHHHHHhcc--ch
Confidence 98876 78899999999998888542 34557899999999999988876 5788999999999888764 34
Q ss_pred hHHHHHHHHHHHHHHcc-cCcccchhhhHHHHHhhccCCCCCccCCCCCccccccCCCCCCCCchhhhhccccceeeecc
Q 004960 562 LREYTHGFFSNIAGVLE-DGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTG 640 (721)
Q Consensus 562 ~~~~~~~~l~~l~~~~~-~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (721)
.|..+..+++.++...+ .++.+|++.++|.+.+.+.. .
T Consensus 624 ~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~-----------------------------------------~ 662 (1230)
T 1u6g_C 624 TRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRK-----------------------------------------N 662 (1230)
T ss_dssp HHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTS-----------------------------------------C
T ss_pred hHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHh-----------------------------------------C
Confidence 67778888888876543 36788999999999865531 1
Q ss_pred hhhhHHHHHHHHHHHHHHcccccc-chHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHH
Q 004960 641 VLDEKAAATQALGLFALHTKSSYA-PFLEESLKILVRHASYFHEDVRYQAVFALKNILTAA 700 (721)
Q Consensus 641 ~~~~k~~a~~~l~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~ 700 (721)
....|.+++.+++.++...++.+. +++..++..+..++++.+..++..+..+|..+++..
T Consensus 663 ~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~ 723 (1230)
T 1u6g_C 663 QRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVY 723 (1230)
T ss_dssp CHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSC
T ss_pred CHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhC
Confidence 124689999999999999986653 455566655666677778888899998888887543
No 11
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=100.00 E-value=1.3e-39 Score=345.60 Aligned_cols=419 Identities=21% Similarity=0.324 Sum_probs=350.4
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHhc--CCCcHHHHHHHHhcC-CChhHHHHHHHHHHHhhhhh-----------hc
Q 004960 4 SLELLLIQFLMPDNDARRQAEDQIKRLAK--DPQVVPALVQHLRTA-KTPNVRQLAAVLLRKKITGH-----------WA 69 (721)
Q Consensus 4 ~l~~ll~~~~s~d~~~r~~A~~~L~~~~~--~p~~~~~l~~il~~~-~~~~vr~~a~~~l~~~i~~~-----------w~ 69 (721)
++.++|..++|||++.|++|+++|+++.+ .|+|+..|++++.++ .++.+|++|+++||+.+..+ |.
T Consensus 2 ~l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~ 81 (462)
T 1ibr_B 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWL 81 (462)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhh
Confidence 58899999999999999999999999887 489999999999885 48999999999999998654 78
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCC--cHHHHHHHHHHHHHhhh
Q 004960 70 KLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSE--QEEHREVALILFSSLTE 147 (721)
Q Consensus 70 ~~~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~--~~~~~~~al~~l~~i~~ 147 (721)
.++++.+..||+.+++.+.+ +++.+ +.++.+++.|+..++|.+.||+++|.+.+.++++ ++..|..++.+++.+++
T Consensus 82 ~l~~~~~~~ik~~ll~~l~~-~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~ 159 (462)
T 1ibr_B 82 AIDANARREVKNYVLQTLGT-ETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQ 159 (462)
T ss_dssp TSCHHHHHHHHHHHHHHTTC-CCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCC-CCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Confidence 89999999999999999986 56677 9999999999999888668999999999999998 89999999999999998
Q ss_pred hh-hhcccccHHHHHHHHHHhhCCCC-CHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHH
Q 004960 148 TI-GQTFRPHFADMQALLLKCLQDET-SNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVI 225 (721)
Q Consensus 148 ~~-~~~~~~~~~~l~~~l~~~l~~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~ 225 (721)
.. ++.+.++.+.+++.+.++++++. ++.||..|+++++.++.+..+......+. +.++..+...+.+++++++..
T Consensus 160 ~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~---~~l~~~l~~~~~~~~~~vr~~ 236 (462)
T 1ibr_B 160 DIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESER---HFIMQVVCEATQCPDTRVRVA 236 (462)
T ss_dssp HSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHH---HHHHHHHHHHTTCSSHHHHHH
T ss_pred hCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHH---HHHHHHHHHhcCCCCHHHHHH
Confidence 76 66677889999999999999832 79999999999999876543221111111 223444445677788999999
Q ss_pred HHHHHHHHhcCcccchhhhHH-HHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhh--hh-------------hc--
Q 004960 226 AFEIFDELIESPAPLLGDSVK-SIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNS--LK-------------KH-- 287 (721)
Q Consensus 226 a~~~l~~l~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~--~~-------------~~-- 287 (721)
+++++..+++..+..+.++++ .+++.++..+.+. ++.+|..++++|..+++..... .. ..
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (462)
T 1ibr_B 237 ALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD--IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFY 314 (462)
T ss_dssp HHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS--SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--chHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHH
Confidence 999999999988888878887 8888777766554 7889999999999998753110 00 00
Q ss_pred --CChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcCccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHh
Q 004960 288 --KLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIIS 365 (721)
Q Consensus 288 --~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~ 365 (721)
++++.+++.++..+.+.++|+++++|++|.+|..++..++..+++.+++.+++.+.+.+.+++|..|++++.++|.++
T Consensus 315 ~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~ 394 (462)
T 1ibr_B 315 AKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCIL 394 (462)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTS
T ss_pred HHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence 124667777888888776666677899999999999999999998888999999999999999999999999999999
Q ss_pred hccH-HHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHH--HHhhhhHHHHHHHhcc
Q 004960 366 EGCA-EWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEI--VSHYESVLPCILNALE 429 (721)
Q Consensus 366 ~~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~l~~l~~~l~ 429 (721)
+++. +.+.++++.++|.+.+.++|+++.||.+|+++++++++.+++.+ .++++.+++.+++.|+
T Consensus 395 ~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L~ 461 (462)
T 1ibr_B 395 EGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS 461 (462)
T ss_dssp SSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC--
T ss_pred cCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHhc
Confidence 9875 44566788999999999999999999999999999999987654 3688899998887764
No 12
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=3e-36 Score=342.74 Aligned_cols=628 Identities=14% Similarity=0.152 Sum_probs=497.8
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHhc------CCCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhcCCC----HHHHH
Q 004960 8 LLIQFLMPDNDARRQAEDQIKRLAK------DPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLS----PQLKQ 77 (721)
Q Consensus 8 ll~~~~s~d~~~r~~A~~~L~~~~~------~p~~~~~l~~il~~~~~~~vr~~a~~~l~~~i~~~w~~~~----~~~~~ 77 (721)
+++.+.++++.+|+++.+.+..+.. .|++++.+.+.+.+ .++.+|..|...|...+...-..+. .....
T Consensus 95 ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~-~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~ 173 (852)
T 4fdd_A 95 CLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDS-EDYNTCEGAFGALQKICEDSAEILDSDVLDRPLN 173 (852)
T ss_dssp HHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSC-SSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHH
Confidence 4445567888999999999977642 36788888887754 5789999999988887765321111 11245
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHccccC--CCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccc
Q 004960 78 LVKQSLIESITLEHSAPVRRASANVVSIIAKYAVP--AGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRP 155 (721)
Q Consensus 78 ~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~--~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~ 155 (721)
.+...+++.+. +++..+|..++.+++.++..... ...++++++.+.+.++++++..|..++.+++.+++..++.+.+
T Consensus 174 ~il~~l~~~l~-~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~ 252 (852)
T 4fdd_A 174 IMIPKFLQFFK-HSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLP 252 (852)
T ss_dssp HHHHHHTTTTT-CSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGG
T ss_pred HHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 56666777666 58999999999999877643210 1245789999999999999999999999999999998888889
Q ss_pred cHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHh-----------hc-------
Q 004960 156 HFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCL-----------AS------- 217 (721)
Q Consensus 156 ~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l-----------~~------- 217 (721)
+++.+++.+.+.+++ .++.+|..|+.++..+++... .......+++.++..+...+ .+
T Consensus 253 ~l~~l~~~l~~~~~~-~~~~vr~~a~e~l~~l~~~~~---~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~ 328 (852)
T 4fdd_A 253 HMHNIVEYMLQRTQD-QDENVALEACEFWLTLAEQPI---CKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGG 328 (852)
T ss_dssp GHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHTTSTT---HHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHccC-CcHHHHHHHHHHHHHHhcchh---HHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccccccc
Confidence 999999999999998 899999999999988876421 11123344555555444444 22
Q ss_pred ----CCHHHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHH
Q 004960 218 ----GEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPI 293 (721)
Q Consensus 218 ----~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~i 293 (721)
.++.++..+..++..++...+. ..++.+++.+.+.+.++ +..+|..|+..++.+++..+..+. ++++.+
T Consensus 329 dd~~~~~~vr~~a~~~L~~la~~~~~---~~~~~l~~~l~~~l~~~--~~~~R~aa~~alg~i~~~~~~~~~--~~l~~~ 401 (852)
T 4fdd_A 329 DDTISDWNLRKCSAAALDVLANVYRD---ELLPHILPLLKELLFHH--EWVVKESGILVLGAIAEGCMQGMI--PYLPEL 401 (852)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHTTTTTHHHHG--GGHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhcchHHHH--HHHHHH
Confidence 2335688999999999876653 34556666666666555 689999999999999987665444 467888
Q ss_pred HHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcC----ccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccH
Q 004960 294 LQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA----KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCA 369 (721)
Q Consensus 294 l~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~----~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~ 369 (721)
++.+++.+.+.. ..+|.++..+++.++...+ ..++..+++.+.+.+.++++..|..|+.+++.+++.++
T Consensus 402 l~~l~~~l~d~~-------~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~ 474 (852)
T 4fdd_A 402 IPHLIQCLSDKK-------ALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEAC 474 (852)
T ss_dssp HHHHHHHTTCSS-------HHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHcCCCC-------HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence 888888886543 6789999999999887654 34667888988888988999999999999999999888
Q ss_pred HHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHH--HHhhhhHHHHHH---HhccCCChHHHHHHHHHHH
Q 004960 370 EWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEI--VSHYESVLPCIL---NALEDESDEVKEKSYYALA 444 (721)
Q Consensus 370 ~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~l~~l~---~~l~~~~~~v~~~a~~al~ 444 (721)
..+.++++.+++.+...+++.+......+..+++.++...++.. .+|++.++|.++ +.+.+.++.++ .++.+++
T Consensus 475 ~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~ 553 (852)
T 4fdd_A 475 TELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLS 553 (852)
T ss_dssp GGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHH
T ss_pred HhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHH
Confidence 77888999999999999987777777778899999887766543 247888888888 45666666675 7899999
Q ss_pred HHHHhhhhccccchHHHHHHHHHhhcC-----------------CChhHHHHHHHHHHHHHHHhhhcchhhH--HHHHHH
Q 004960 445 AFCEDMGEEILPFLDPLMGKLLAALEN-----------------SPRNLQETCMSAIGSVAAAAEQAFIPYA--ERVLEL 505 (721)
Q Consensus 445 ~l~~~~~~~~~~~~~~i~~~l~~~l~~-----------------~~~~v~~~~l~~l~~l~~~~~~~~~~~~--~~i~~~ 505 (721)
.++...+..+.||++.+++.+.+.+.+ ++..++..++.+++.++...|+++.+|+ +.+++.
T Consensus 554 ~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~ 633 (852)
T 4fdd_A 554 SVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTL 633 (852)
T ss_dssp HHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHH
T ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHH
Confidence 999999999999999888866665432 2566889999999999999999999998 779998
Q ss_pred HHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHcccCcccch
Q 004960 506 LKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYL 585 (721)
Q Consensus 506 l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l 585 (721)
+...++. +...+|..++.+++.++..++. .+.+|++.+++.+...+..+++++|..+..+++.++..+|.++.||+
T Consensus 634 l~~~l~~---~~~~vr~~a~~~l~~l~~~~~~-~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~p~~ 709 (852)
T 4fdd_A 634 MYQCMQD---KMPEVRQSSFALLGDLTKACFQ-HVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYI 709 (852)
T ss_dssp HHHHTTC---SSHHHHHHHHHHHHHHHHHCGG-GTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGGGGGT
T ss_pred HHHHhCC---CChhHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHhHHHHH
Confidence 8888743 3456888999999999988864 89999999999999999888889999999999999999999999999
Q ss_pred hhhHHHHHhhccCCCCCccCCCCCccccccCCCCCCCCchhhhhccccceeeecchhhhHHHHHHHHHHHHHHccccccc
Q 004960 586 PLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAP 665 (721)
Q Consensus 586 ~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~~~~~~~ 665 (721)
+.+++.++..++... .....+..|+.++|.++...++.+.|
T Consensus 710 ~~il~~L~~~l~~~~---------------------------------------~~~~~~~~a~~~igrl~~~~~~~~~~ 750 (852)
T 4fdd_A 710 PMVLHQLVEIINRPN---------------------------------------TPKTLLENTAITIGRLGYVCPQEVAP 750 (852)
T ss_dssp HHHHHHHHHHHTCSS---------------------------------------CCHHHHHHHHHHHHHHHHHCHHHHGG
T ss_pred HHHHHHHHHHhCCCC---------------------------------------CCchHHHHHHHHHHHHHHhCHHHhCc
Confidence 999999998774210 01136899999999999999988899
Q ss_pred hHHHHHHHHHhcccC-CChhHHHHHHHHHHHHHHH
Q 004960 666 FLEESLKILVRHASY-FHEDVRYQAVFALKNILTA 699 (721)
Q Consensus 666 ~~~~~~~~l~~~~~~-~~~~vr~~a~~~l~~l~~~ 699 (721)
|++++++.....+.. .+.+.|..|.+++..++..
T Consensus 751 ~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~ 785 (852)
T 4fdd_A 751 MLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISV 785 (852)
T ss_dssp GHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh
Confidence 999999998888764 4566799999999999887
No 13
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=100.00 E-value=5.6e-35 Score=325.61 Aligned_cols=670 Identities=13% Similarity=0.181 Sum_probs=462.7
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHH
Q 004960 3 QSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQS 82 (721)
Q Consensus 3 ~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i~~~ 82 (721)
+.+.+++..+++|+++.|++|+++|++++++|++|..+..++.++.++.+|++|+++|++.++++|..++++.+..+|+.
T Consensus 28 ~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~LR~~ 107 (1073)
T 3gjx_A 28 NLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQCEGIKKY 107 (1073)
T ss_dssp HHHHHHHHTTTCSSHHHHHHHHHHHHTSSCCSCHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHcCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHH
Confidence 47888999999999999999999999999999999999999987789999999999999999999999999999999999
Q ss_pred HHHHHhh--------cCCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhh---
Q 004960 83 LIESITL--------EHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQ--- 151 (721)
Q Consensus 83 ll~~l~~--------e~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~--- 151 (721)
+++.+.+ +.++.++++++.+++.++..++|. .||++++.+.+.+++ ++..+..++.+|..+.+...+
T Consensus 108 Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~-~Wp~fi~dLv~~~~~-~~~~~~~~L~IL~~L~EEV~d~~~ 185 (1073)
T 3gjx_A 108 VVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPK-HWPTFISDIVGASRT-SESLCQNNMVILKLLSEEVFDFSS 185 (1073)
T ss_dssp HHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTT-TCTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChh-hccHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999864 235788999999999999999995 899999999999864 456677899999988876321
Q ss_pred -------------cccccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcC
Q 004960 152 -------------TFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASG 218 (721)
Q Consensus 152 -------------~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~ 218 (721)
.+...++.+++.+..+++...++.+...+++++..++.|.+-.. +. -.++++.++ ...+ +
T Consensus 186 ~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~-i~-~~~ll~~L~---~~~L--~ 258 (1073)
T 3gjx_A 186 GQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGY-IF-ETKLISTLI---YKFL--N 258 (1073)
T ss_dssp HHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHH-HH-SSSHHHHHH---HHTS--S
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHHH-hc-cchHHHHHH---HHhc--C
Confidence 23344577888888888764788888889999999999875321 11 122333221 1222 3
Q ss_pred CHHHHHHHHHHHHHHhcCccc-c---------------------------------------------------------
Q 004960 219 EEDVAVIAFEIFDELIESPAP-L--------------------------------------------------------- 240 (721)
Q Consensus 219 ~~~~~~~a~~~l~~l~~~~~~-~--------------------------------------------------------- 240 (721)
+++.+..|++||.+++....+ +
T Consensus 259 ~~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~l 338 (1073)
T 3gjx_A 259 VPMFRNVSLKCLTEIAGVSVSQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQL 338 (1073)
T ss_dssp SHHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 556666667766666543210 0
Q ss_pred ------hhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhh--------------------hhc---CChH
Q 004960 241 ------LGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSL--------------------KKH---KLVI 291 (721)
Q Consensus 241 ------~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~--------------------~~~---~~~~ 291 (721)
+...+...++.++.+...+ +.++-..++++|..+.+.--... ++. +++.
T Consensus 339 Ie~~p~~~~~l~~~l~~ll~~s~~~--d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~ 416 (1073)
T 3gjx_A 339 LEKRLNLREALMEALHYMLLVSEVE--ETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLS 416 (1073)
T ss_dssp HHHCGGGHHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHH
T ss_pred HhcCccchHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHH
Confidence 0011111122222222232 55666778888887775422110 111 1233
Q ss_pred HHHHHHHhhhccCCC----CCCCCC-----------CcHHHHHHHHHHHHHHHcCccccHhHHHHHHhhhcC--CChhhH
Q 004960 292 PILQVMCPLLAESNE----AGEDDD-----------LAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQN--ASPKYR 354 (721)
Q Consensus 292 ~il~~l~~~l~~~~~----~~~~~~-----------~~~~~~a~~~l~~l~~~~~~~~~~~i~~~l~~~l~~--~~~~~r 354 (721)
.+...++..|..+++ ++|+++ ...++...+++..++...+......+++.+.+.+.. .+|..+
T Consensus 417 ~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~i~~~~l~~~~~~~~~sW~~l 496 (1073)
T 3gjx_A 417 KVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYVDTEIIMTKKLQNQVNGTEWSWKNL 496 (1073)
T ss_dssp HHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSCCCCHHHH
T ss_pred HHHHHHHHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 344455555665543 111111 124456667777766555566667777777766543 479999
Q ss_pred hHHHHHHHHHhhccHH-HHHHhHHHHHHHHHhhcCCC-----CHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhc
Q 004960 355 EAAVTAIGIISEGCAE-WMKEKLESVLHIVLGALRDP-----EQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNAL 428 (721)
Q Consensus 355 ~~al~~l~~i~~~~~~-~~~~~l~~i~~~l~~~l~d~-----~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l 428 (721)
+++++++|+++..... .-.++++.+++.++.....+ .+.++...++++|++.+++.. ..++++.++..+++.+
T Consensus 497 ea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~-h~~~L~~vl~~L~~~m 575 (1073)
T 3gjx_A 497 NTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRA-HWKFLKTVVNKLFEFM 575 (1073)
T ss_dssp HHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHH-CHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHh-CHHHHHHHHHHHHHHH
Confidence 9999999999976654 34577899999998877544 456788888999999999853 3568999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHHhhhhcc--------ccchHHHHHHHHHhhcCCChhHHH----------------------
Q 004960 429 EDESDEVKEKSYYALAAFCEDMGEEI--------LPFLDPLMGKLLAALENSPRNLQE---------------------- 478 (721)
Q Consensus 429 ~~~~~~v~~~a~~al~~l~~~~~~~~--------~~~~~~i~~~l~~~l~~~~~~v~~---------------------- 478 (721)
.+.++.|+..||.++..+++.++..+ .||++.+++.+......-++.-..
T Consensus 576 ~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~~~~~~~ 655 (1073)
T 3gjx_A 576 HETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTVQEHL 655 (1073)
T ss_dssp TCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCcchHHHH
Confidence 99999999999999999999997654 468888877766655442221111
Q ss_pred ------------------------------------HHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHhcc---------
Q 004960 479 ------------------------------------TCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLT--------- 513 (721)
Q Consensus 479 ------------------------------------~~l~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~--------- 513 (721)
.++++...++...|..|.+++..+++-+.+..+..
T Consensus 656 i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~~~~g~~f~~~~~~i~~~~l~~y~~~s~~i~~~v~ 735 (1073)
T 3gjx_A 656 IEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHPFVIQLGRIYLDMLNVYKCLSENISAAIQ 735 (1073)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhhhHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23334444555666677777766666554433210
Q ss_pred --Cc---hhh------hhHHHHHHHHHHHHHhhc-h-hhccCChHHHHHHHHhccCCCChhhHH-HHHHHHHHHHHHccc
Q 004960 514 --ND---EDL------RSRARATELLGLVAESVG-R-ARMEPILPPFVEAAISGFGLEFSELRE-YTHGFFSNIAGVLED 579 (721)
Q Consensus 514 --~~---~~~------~~~~~~~~~l~~l~~~~~-~-~~~~~~~~~i~~~l~~~l~~~~~~~~~-~~~~~l~~l~~~~~~ 579 (721)
.. ... .+|...+..+........ . .....+++++++.++...+...|..|. .++.+++.++..+|.
T Consensus 736 ~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~~~~~~v~~~~i~pl~~~vl~dY~~~~p~~r~~evL~l~s~iv~k~~~ 815 (1073)
T 3gjx_A 736 ANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGG 815 (1073)
T ss_dssp HHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHTSHHHHHHTHHHHHHSCGGGCCTHHHHHHHHHHHHHGG
T ss_pred hCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHh
Confidence 00 000 012223333333221110 1 113345678888887766655555553 378999999999999
Q ss_pred CcccchhhhHHHHHhhccCCCCCccCCCCCccccccCCCCCCCCchhhhhccccceeeecchhhhHHHHHHHHHHHHHHc
Q 004960 580 GFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHT 659 (721)
Q Consensus 580 ~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~ 659 (721)
.+.++++.++..++.+.-. .+.++. ...+|+|..-.+++..+..++
T Consensus 816 ~~~~~~~~il~~vf~~Tl~------mi~~~f----------------------------~~~Pe~r~~ff~ll~~~~~~~ 861 (1073)
T 3gjx_A 816 HITAEIPQIFDAVFECTLN------MINKDF----------------------------EEYPEHRTNFFLLLQAVNSHC 861 (1073)
T ss_dssp GTGGGHHHHHHHHHHHHHH------HHSSCS----------------------------SSCHHHHHHHHHHHHHHHHHC
T ss_pred hcchhHHHHHHHHHHHHHH------HHhCCc----------------------------ccCcHHHHHHHHHHHHHHHHH
Confidence 9999999999988754210 011000 123578999999999999999
Q ss_pred cccccc----hHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHHhcccCCcchhHHHHHhhc
Q 004960 660 KSSYAP----FLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNVSLCYHFFLLSC 720 (721)
Q Consensus 660 ~~~~~~----~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 720 (721)
...+.. .+..+++.+....++.+.+|-..+.+.+-.+++++... +..+...|+.|+++.
T Consensus 862 f~~l~~l~~~~~~~~i~~i~wa~kh~~r~i~~~~l~~~~~ll~~~~~~--~~~~~~F~~~~~~~~ 924 (1073)
T 3gjx_A 862 FPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQE--EAAAQSFYQTYFCDI 924 (1073)
T ss_dssp GGGTTTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHH
T ss_pred hHHHHcCCHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHhhcC--hHHHHHHHHHHHHHH
Confidence 887754 46678899999999999999999999999999987642 235677888888764
No 14
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=100.00 E-value=1.3e-35 Score=333.86 Aligned_cols=615 Identities=13% Similarity=0.136 Sum_probs=430.8
Q ss_pred hhHHHHHHHHhcCC--ChHHHHHHHHHHHHHhcCCCcHHHHHHHHhcCC--ChhHHHHHHHHHHHhhhhhhcCCCHH---
Q 004960 2 AQSLELLLIQFLMP--DNDARRQAEDQIKRLAKDPQVVPALVQHLRTAK--TPNVRQLAAVLLRKKITGHWAKLSPQ--- 74 (721)
Q Consensus 2 ~~~l~~ll~~~~s~--d~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~--~~~vr~~a~~~l~~~i~~~w~~~~~~--- 74 (721)
.+++.++++.+++| |++.|++|+++|++++++|++|..+..++.+++ ++.+|++|+.+|++.++ .++++
T Consensus 5 ~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~----~l~~e~~~ 80 (980)
T 3ibv_A 5 AQDVENAVEAALDPSVGPIIKQQATDFIGSLRSSSTGWKICHEIFSEKTKYKPSTRLICLQTLSEKVR----EWNNESNL 80 (980)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSTTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHH----HCCTTTSH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcChhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH----hCChhhhH
Confidence 36788999888877 789999999999999999999999999998753 89999999999999998 57888
Q ss_pred -HHHHHHHHHHHHHhh----cCCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcH-HHHHHHHHHHHHhhhh
Q 004960 75 -LKQLVKQSLIESITL----EHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQE-EHREVALILFSSLTET 148 (721)
Q Consensus 75 -~~~~i~~~ll~~l~~----e~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~-~~~~~al~~l~~i~~~ 148 (721)
.+..+|+.+++.+.+ ..++.+|++++.+++.++.+++|. .||++++.+.+.+++++. ......++++..+.+.
T Consensus 81 ~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~-~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EE 159 (980)
T 3ibv_A 81 LELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPS-NWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDE 159 (980)
T ss_dssp HHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTT-TCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcc-cCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHH
Confidence 999999999999985 246789999999999999999995 999999999999986544 3344566666655555
Q ss_pred hhhc------------------cccc-----HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHH
Q 004960 149 IGQT------------------FRPH-----FADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIP 205 (721)
Q Consensus 149 ~~~~------------------~~~~-----~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~ 205 (721)
..+. +... .+.++.++.++... .++.++..++.|+..++.|.+... ... .++++
T Consensus 160 v~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~-~~~~l~~~~L~~l~s~i~wi~~~~-i~~-~~ll~ 236 (980)
T 3ibv_A 160 IADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNA-KNYGTVGLCLQVYAQWVSWININL-IVN-EPCMN 236 (980)
T ss_dssp HCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTTTSCHHH-HHC-HHHHH
T ss_pred HHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHhhcCHHh-hhc-chHHH
Confidence 3211 1111 23333444444444 678899999999999999874321 111 23333
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCccc----------------------------------------------
Q 004960 206 SILNVSRQCLASGEEDVAVIAFEIFDELIESPAP---------------------------------------------- 239 (721)
Q Consensus 206 ~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~---------------------------------------------- 239 (721)
.+...+. +++.+..|++||..++.....
T Consensus 237 ----~l~~~L~--~~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~ 310 (980)
T 3ibv_A 237 ----LLYSFLQ--IEELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVA 310 (980)
T ss_dssp ----HHHHHTT--SHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHcC--ChHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 3333443 355666666666555433210
Q ss_pred --------------chhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhh-------hcCChHHHHHHHH
Q 004960 240 --------------LLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLK-------KHKLVIPILQVMC 298 (721)
Q Consensus 240 --------------~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~-------~~~~~~~il~~l~ 298 (721)
.....+..+++.++.++.++ ++++-..++.+|..+.+.....-. ..++++.+++.++
T Consensus 311 ~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~--~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li 388 (980)
T 3ibv_A 311 IKSDPSELSPELKENCSFQLYNLFPYLIRYLSDD--YDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAII 388 (980)
T ss_dssp HHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCS--SHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HccCccccchhhhhhHHHHHHHHHHHHHHHhCCC--chhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHH
Confidence 01133445566666666665 567777788888877754221110 0145677777788
Q ss_pred hhhccCCCCCCC-----CC----CcHHHHHHHHHHHHHHHcCccccH----hHHHHHHhhhc---CCChhhHhHHHHHHH
Q 004960 299 PLLAESNEAGED-----DD----LAPDRAAAEVIDTMALNLAKHVFP----PVFEFASVSCQ---NASPKYREAAVTAIG 362 (721)
Q Consensus 299 ~~l~~~~~~~~~-----~~----~~~~~~a~~~l~~l~~~~~~~~~~----~i~~~l~~~l~---~~~~~~r~~al~~l~ 362 (721)
..+..+++++.+ |+ .+.|+.....++.++...++.++. .+.+.+.+.+. +.+|+.+++++.+++
T Consensus 389 ~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~ 468 (980)
T 3ibv_A 389 KKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETY 468 (980)
T ss_dssp HTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHH
Confidence 777765442211 11 134444444444444444454555 44445555442 457999999999999
Q ss_pred HHhhccHHHH------HHhHHHHHHHHHhhcC-----CCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHH--hcc
Q 004960 363 IISEGCAEWM------KEKLESVLHIVLGALR-----DPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILN--ALE 429 (721)
Q Consensus 363 ~i~~~~~~~~------~~~l~~i~~~l~~~l~-----d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~--~l~ 429 (721)
.+++++.... .+.++.+++.+...++ +++|.||..+++++|++++++.. ..++++.+++.++. ++.
T Consensus 469 ~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~-~~~~l~~~L~~ll~~~gl~ 547 (980)
T 3ibv_A 469 IFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY-ESAAIPALIEYFVGPRGIH 547 (980)
T ss_dssp HTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT-CCTTHHHHHHHHTSTTTTT
T ss_pred HHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc-CchhHHHHHHHHhcccccc
Confidence 9999876321 1235566666666654 88999999999999999999864 23688999999999 999
Q ss_pred CCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCC----C-----------------hhHHHHHHHHHHHHH
Q 004960 430 DESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENS----P-----------------RNLQETCMSAIGSVA 488 (721)
Q Consensus 430 ~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~----~-----------------~~v~~~~l~~l~~l~ 488 (721)
+++.+|+.+|+.++.++++.++..+.||++.+++.+..++... + .+-+-.+++++|.++
T Consensus 548 ~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li 627 (980)
T 3ibv_A 548 NTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLI 627 (980)
T ss_dssp CCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998887732 1 113567999999999
Q ss_pred HHhh---hcchhhHHHHHHHHHHHHhc----cCch-hhhhH-HHHHHHHHHHHHhhch--hhccC---ChHHHHHHHHhc
Q 004960 489 AAAE---QAFIPYAERVLELLKIFMVL----TNDE-DLRSR-ARATELLGLVAESVGR--ARMEP---ILPPFVEAAISG 554 (721)
Q Consensus 489 ~~~~---~~~~~~~~~i~~~l~~~l~~----~~~~-~~~~~-~~~~~~l~~l~~~~~~--~~~~~---~~~~i~~~l~~~ 554 (721)
...+ +.-..|+..+++.+.+-++. .... +...+ ...+.+++.+++.+.. ....| .+.++++.++..
T Consensus 628 ~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~ 707 (980)
T 3ibv_A 628 SSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLI 707 (980)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHH
T ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHH
Confidence 8864 34456777777665554432 1111 11111 2446667777765531 11122 334566666554
Q ss_pred cC--CCChhhHHHHHHHHHHHHHHcccCcccchhhhHHHHHhhccCCCCCccCCCCCccccccCCCCCCCCchhhhhccc
Q 004960 555 FG--LEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSV 632 (721)
Q Consensus 555 l~--~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (721)
+. ..+..+|+++..++.+++.++|.++.|++|.++..+++..+..
T Consensus 708 l~~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~~~~~~--------------------------------- 754 (980)
T 3ibv_A 708 LDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLNSIDMN--------------------------------- 754 (980)
T ss_dssp HHHSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHHHCCTT---------------------------------
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHhcCCHH---------------------------------
Confidence 44 4578999999999999999999999999999999999543211
Q ss_pred cceeeecchhhhHHHHHHHHHHHHHHccccccchHHHHHHHHHhc
Q 004960 633 RNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVRH 677 (721)
Q Consensus 633 ~~~~~~~~~~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 677 (721)
.-...++++|.++..+++.+.|.+.+++..+...
T Consensus 755 -----------e~~~fL~l~~qli~~f~~~~~~~l~~ll~~l~~~ 788 (980)
T 3ibv_A 755 -----------ELVDVLSFISQLIHIYKDNMMEITNRMLPTLLMR 788 (980)
T ss_dssp -----------THHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1256889999999999988888888777776653
No 15
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=5.6e-34 Score=327.35 Aligned_cols=640 Identities=14% Similarity=0.161 Sum_probs=485.4
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHh-------cCCCcHHHHHHHHhcCC-ChhHHHHHHHHHHHhhhhhhcCCCHHHHHHH
Q 004960 8 LLIQFLMPDNDARRQAEDQIKRLA-------KDPQVVPALVQHLRTAK-TPNVRQLAAVLLRKKITGHWAKLSPQLKQLV 79 (721)
Q Consensus 8 ll~~~~s~d~~~r~~A~~~L~~~~-------~~p~~~~~l~~il~~~~-~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i 79 (721)
+++.+.+++... +.+.+.+..+. ..|++++.+...+.++. ++.+|..|...|...+...-...-......+
T Consensus 95 ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~l 173 (876)
T 1qgr_A 95 VLHTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEI 173 (876)
T ss_dssp HHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHH
T ss_pred HHHHhCCCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHH
Confidence 555566666656 66666665432 34788889998886643 7899999998888877542100012234556
Q ss_pred HHHHHHHHhhc-CCHHHHHHHHHHHHHHHccccC---CCCC-cchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhccc
Q 004960 80 KQSLIESITLE-HSAPVRRASANVVSIIAKYAVP---AGEW-PDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFR 154 (721)
Q Consensus 80 ~~~ll~~l~~e-~~~~vr~~~~~~l~~i~~~~~~---~~~~-~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~ 154 (721)
...+.+.+..+ ++..+|..+..+++.++....+ ...| +.+++.+.+.+.+.++..|..++.++..+++..+..+.
T Consensus 174 l~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~ 253 (876)
T 1qgr_A 174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYME 253 (876)
T ss_dssp HHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCH
T ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHH
Confidence 66677777653 2789999999999988753211 1112 23788888888888899999999999999998888888
Q ss_pred ccHH-HHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCC------------------h-hh-HHHHHhhHHHHHHHHHH
Q 004960 155 PHFA-DMQALLLKCLQDETSNRVRIAALKAIGSFLEFTND------------------G-AE-VVKFREFIPSILNVSRQ 213 (721)
Q Consensus 155 ~~~~-~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~------------------~-~~-~~~~~~~l~~ll~~l~~ 213 (721)
+++. .+++.+...+.+ .++.+|..++.++..+++...+ . .. ......++|.+++
T Consensus 254 ~~~~~~l~~~~~~~~~~-~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~---- 328 (876)
T 1qgr_A 254 TYMGPALFAITIEAMKS-DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQ---- 328 (876)
T ss_dssp HHHTTTHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHH----
Confidence 8888 899999998888 8899999999998888754210 0 00 0012334444444
Q ss_pred Hhh-------cCCHHHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhH-hhhh
Q 004960 214 CLA-------SGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKY-NSLK 285 (721)
Q Consensus 214 ~l~-------~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~-~~~~ 285 (721)
.+. ++++.+|..+..++..++...+. ..++.+++.+...+.+. +..+|..++..++.+++..+ ..+.
T Consensus 329 ~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~~l~~l~~~l~~~--~~~~r~~a~~~l~~i~~~~~~~~~~ 403 (876)
T 1qgr_A 329 TLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIVPHVLPFIKEHIKNP--DWRYRDAAVMAFGCILEGPEPSQLK 403 (876)
T ss_dssp HTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHTSSSSCHHHHH
T ss_pred HhhcccccccccccHHHHHHHHHHHHHHHHCcH---hhHHHHHHHHHHHccCC--ChHHHHHHHHHHHHHHcCCCHHHHH
Confidence 443 24567899999999999876552 34566677666666554 68899999999998886433 2222
Q ss_pred hcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcCc-----cccHhHHHHHHhhhcCCChhhHhHHHHH
Q 004960 286 KHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAK-----HVFPPVFEFASVSCQNASPKYREAAVTA 360 (721)
Q Consensus 286 ~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~-----~~~~~i~~~l~~~l~~~~~~~r~~al~~ 360 (721)
++++.+++.+++.+.+.. ..+|..+..++..++...++ ..++.+++.+...+.++ +..|..++.+
T Consensus 404 --~~~~~~l~~l~~~l~d~~-------~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~a 473 (876)
T 1qgr_A 404 --PLVIQAMPTLIELMKDPS-------VVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWA 473 (876)
T ss_dssp --HHHHHHHHHHHHHHTCSS-------HHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHH
Confidence 246677777777775433 67899999999999988653 46678888888888775 8889999999
Q ss_pred HHHHhhccH--------------HHHHHhHHHHHHHHHhhcCCC---CHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHH
Q 004960 361 IGIISEGCA--------------EWMKEKLESVLHIVLGALRDP---EQFVRGAASFALGQFAEYLQPEIVSHYESVLPC 423 (721)
Q Consensus 361 l~~i~~~~~--------------~~~~~~l~~i~~~l~~~l~d~---~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~ 423 (721)
++.++..++ +.+.++++.+++.+...+.+. +..+|..++.+++.++...+....+++..+++.
T Consensus 474 l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~ 553 (876)
T 1qgr_A 474 FSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLV 553 (876)
T ss_dssp HHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHH
T ss_pred HHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHH
Confidence 999998755 236678999999999999764 468999999999999998877666778888888
Q ss_pred HHHhccC-----------CC----hHHHHHHHHHHHHHHHhhh-hccccchHHHHHHHHHhhcCCC--hhHHHHHHHHHH
Q 004960 424 ILNALED-----------ES----DEVKEKSYYALAAFCEDMG-EEILPFLDPLMGKLLAALENSP--RNLQETCMSAIG 485 (721)
Q Consensus 424 l~~~l~~-----------~~----~~v~~~a~~al~~l~~~~~-~~~~~~~~~i~~~l~~~l~~~~--~~v~~~~l~~l~ 485 (721)
+++.+.+ .+ +.++..++.+++.++...+ ..+.||++.+++.+.+.+.+.. ..+++.++.+++
T Consensus 554 l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~ 633 (876)
T 1qgr_A 554 IMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVS 633 (876)
T ss_dssp HHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHH
Confidence 8776652 11 4578889999999999998 8899999999999999998874 478999999999
Q ss_pred HHHHHhhhcchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCC--CChhhH
Q 004960 486 SVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGL--EFSELR 563 (721)
Q Consensus 486 ~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~--~~~~~~ 563 (721)
.++...+..+.+|++.++|.+...+... .+..+|..++.+++.++..+|. .+.++++.+++.++..+++ .+.++|
T Consensus 634 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~~i~~~l~~~l~~~~~~~~~~ 710 (876)
T 1qgr_A 634 TLVEVLGGEFLKYMEAFKPFLGIGLKNY--AEYQVCLAAVGLVGDLCRALQS-NIIPFCDEVMQLLLENLGNENVHRSVK 710 (876)
T ss_dssp HHHHHHGGGGGGGHHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHHHHHTCTTSCGGGH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHcCc--chHHHHHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHhCCccccHHhh
Confidence 9999999999999999999999988753 2346788899999999998875 7888999999999998876 367899
Q ss_pred HHHHHHHHHHHHHcccCcccchhhhHHHHHhhccCCCCCccCCCCCccccccCCCCCCCCchhhhhccccceeeecchhh
Q 004960 564 EYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLD 643 (721)
Q Consensus 564 ~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (721)
..++.+++.++..+|.+|.+|++.++|.+.+....+.+. ++ ++..+ -...
T Consensus 711 ~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~------~d--------------~~~~~----------~~~~ 760 (876)
T 1qgr_A 711 PQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDK------SD--------------YDMVD----------YLNE 760 (876)
T ss_dssp HHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCT------TC--------------HHHHH----------HHHH
T ss_pred HHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCC------CC--------------hHHHH----------HHHH
Confidence 999999999999999999999999999999876432110 00 00000 0125
Q ss_pred hHHHHHHHHHHHHHHccc----------cccchHHHHHHHHHhcccCC--ChhHHHHHHHHHHHHHHHHH
Q 004960 644 EKAAATQALGLFALHTKS----------SYAPFLEESLKILVRHASYF--HEDVRYQAVFALKNILTAAH 701 (721)
Q Consensus 644 ~k~~a~~~l~~~~~~~~~----------~~~~~~~~~~~~l~~~~~~~--~~~vr~~a~~~l~~l~~~~~ 701 (721)
.|..++.+++.++..+++ .+.||++.+++.+.....+. ++.||..|+.+|+.++..+.
T Consensus 761 ~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~ 830 (876)
T 1qgr_A 761 LRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFG 830 (876)
T ss_dssp HHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 688899999999888763 67899999999888887666 78999999999999998773
No 16
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=1e-34 Score=343.23 Aligned_cols=597 Identities=13% Similarity=0.162 Sum_probs=478.9
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHccccCCCCC
Q 004960 37 VPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEW 116 (721)
Q Consensus 37 ~~~l~~il~~~~~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~ 116 (721)
+..+++-+. +.++.+|..|...|.+.++......++.....+...+++.+. ++++.+|+.++.+++.++....+ ..+
T Consensus 8 l~~lL~~l~-s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~-d~~~~vR~~A~~~L~~l~~~~~~-~~~ 84 (1230)
T 1u6g_C 8 ISNLLEKMT-SSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE-DKNGEVQNLAVKCLGPLVSKVKE-YQV 84 (1230)
T ss_dssp HHHHHHHTT-CSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHTTSCH-HHH
T ss_pred HHHHHHhcC-CCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhCCH-HHH
Confidence 455555543 468999999999998888766555666777788888999987 58999999999999999975433 367
Q ss_pred cchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhc------ccccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhh
Q 004960 117 PDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQT------FRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEF 190 (721)
Q Consensus 117 ~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~------~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~ 190 (721)
+.+++.+.+.+.+++...|..+..+++.++...+.. ...+.+.++|.+..++.+.+++.+|..|+.++..+++.
T Consensus 85 ~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~ 164 (1230)
T 1u6g_C 85 ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSR 164 (1230)
T ss_dssp HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence 889999999999888899999999999999876543 23468999999999998437899999999999999875
Q ss_pred cCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcc-cchhhhHHHHHHHHHHhhcCCCCChHHHHHH
Q 004960 191 TNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPA-PLLGDSVKSIVHFSLEVSSSHNLEPNTRHQA 269 (721)
Q Consensus 191 ~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a 269 (721)
.+.. +..+++.++..+...+.++++.+|..|+.+++.++...+ .++...++.+++.+.. .. +...|..+
T Consensus 165 ~~~~-----l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~----~~-~~~~r~~a 234 (1230)
T 1u6g_C 165 QGGL-----LVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSK----ND-SMSTTRTY 234 (1230)
T ss_dssp TCSS-----CTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHH----TC-SSCSCTTH
T ss_pred hHhH-----HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcc----CC-chhHHHHH
Confidence 4332 234566777777678888889999999999999998754 3344555655555433 21 23567888
Q ss_pred HHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcCcc---ccHhHHHHHHhhh
Q 004960 270 IQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKH---VFPPVFEFASVSC 346 (721)
Q Consensus 270 ~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~---~~~~i~~~l~~~l 346 (721)
+++++.+++..+..+. ++++.+++.++..+.+. +...|..+..++..++...++. +++.+++.+.+.+
T Consensus 235 ~~~l~~l~~~~~~~~~--~~l~~l~~~ll~~l~d~-------~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l 305 (1230)
T 1u6g_C 235 IQCIAAISRQAGHRIG--EYLEKIIPLVVKFCNVD-------DDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYL 305 (1230)
T ss_dssp HHHHHHHHHHSSGGGT--TSCTTHHHHHHHHHSSC-------CTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhHHHHH--HHHHHHHHHHHHHhcCC-------CHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHh
Confidence 9999999987666553 46788888888887632 2568999999999999887754 4566666655443
Q ss_pred c-------------------------------------CCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCC
Q 004960 347 Q-------------------------------------NASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRD 389 (721)
Q Consensus 347 ~-------------------------------------~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d 389 (721)
. +..|..|.+|+.+++.++...++.+.++++.+++.+...+.|
T Consensus 306 ~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d 385 (1230)
T 1u6g_C 306 TYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKE 385 (1230)
T ss_dssp CCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSC
T ss_pred CCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCC
Confidence 2 124888999999999999876666778889999999999999
Q ss_pred CCHhHHHHHHHHHHHHHhhhh-------------------HHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhh
Q 004960 390 PEQFVRGAASFALGQFAEYLQ-------------------PEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDM 450 (721)
Q Consensus 390 ~~~~vr~~a~~~l~~l~~~~~-------------------~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~ 450 (721)
+++.||..++.+++.++...+ ..+..+++.+++.+.+.++++++.+|..++.+++.++...
T Consensus 386 ~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~ 465 (1230)
T 1u6g_C 386 REENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVL 465 (1230)
T ss_dssp SSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred CchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHc
Confidence 999999999999998887542 2345678889999999999999999999999999999998
Q ss_pred hhccccchHHHHHHHHHhhcCCC--hhHHHHHHHHHHHHHHHhh-hcchhhHHHHHHHHHHHHhccCchhhhhHHHHHHH
Q 004960 451 GEEILPFLDPLMGKLLAALENSP--RNLQETCMSAIGSVAAAAE-QAFIPYAERVLELLKIFMVLTNDEDLRSRARATEL 527 (721)
Q Consensus 451 ~~~~~~~~~~i~~~l~~~l~~~~--~~v~~~~l~~l~~l~~~~~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~ 527 (721)
+..+.+|++.+++.+...+.+.. ..++..++.+++.++...+ +.+.+|++.++|.+...++. +...++..++.+
T Consensus 466 ~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d---~~~~v~~~al~~ 542 (1230)
T 1u6g_C 466 PGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGD---PFYKITSEALLV 542 (1230)
T ss_dssp TTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTC---SSHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcc---cchHHHHHHHHH
Confidence 87788999999999999999876 4889999999998887666 44889999999998887743 345677788999
Q ss_pred HHHHHHhhch------hhccCChHHHHHHHHhcc--CCCChhhHHHHHHHHHHHHHHcccCcccchhhhHHHHHhhccCC
Q 004960 528 LGLVAESVGR------ARMEPILPPFVEAAISGF--GLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLD 599 (721)
Q Consensus 528 l~~l~~~~~~------~~~~~~~~~i~~~l~~~l--~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~ 599 (721)
++.++..+|+ ..+.||++.+++.++..+ .+.++++|..++.+++.++...|..+.+|++.++|.+.+.+...
T Consensus 543 l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e 622 (1230)
T 1u6g_C 543 TQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNE 622 (1230)
T ss_dssp HHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccc
Confidence 9999988775 367788999999999988 56788999999999999999999999999999999998765310
Q ss_pred CCCccCCCCCccccccCCCCCCCCchhhhhccccceeeecchhhhHHHHHHHHHHHHHHcc-ccccchHHHHHHHHHhcc
Q 004960 600 DGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTK-SSYAPFLEESLKILVRHA 678 (721)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~ 678 (721)
.+|..++++++.++.... ..+.+|++.+++.+...+
T Consensus 623 -------------------------------------------~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l 659 (1230)
T 1u6g_C 623 -------------------------------------------ITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFL 659 (1230)
T ss_dssp -------------------------------------------SHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHT
T ss_pred -------------------------------------------hhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHH
Confidence 147889999998876432 367899999999999999
Q ss_pred cCCChhHHHHHHHHHHHHHHHHH
Q 004960 679 SYFHEDVRYQAVFALKNILTAAH 701 (721)
Q Consensus 679 ~~~~~~vr~~a~~~l~~l~~~~~ 701 (721)
.+.+..+|..++.+++.+++...
T Consensus 660 ~~~~~~~r~~a~~al~~l~~~~~ 682 (1230)
T 1u6g_C 660 RKNQRALKLGTLSALDILIKNYS 682 (1230)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHCC
T ss_pred HhCCHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999988754
No 17
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=100.00 E-value=3.9e-33 Score=305.36 Aligned_cols=570 Identities=15% Similarity=0.116 Sum_probs=432.1
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhcCCCH-HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHccccCCCC
Q 004960 37 VPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSP-QLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGE 115 (721)
Q Consensus 37 ~~~l~~il~~~~~~~vr~~a~~~l~~~i~~~w~~~~~-~~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~ 115 (721)
+..++.-+. ++++.+|..|+..+...... +.+ .....+...+...+ ++++.+|..++.+++.+.....+...
T Consensus 12 i~~l~~~l~-s~~~~~R~~A~~~l~~i~~~----~~~~~~~~~l~~~L~~~~--d~~~~vr~~~~~~L~~~~~~~~~~~~ 84 (588)
T 1b3u_A 12 IAVLIDELR-NEDVQLRLNSIKKLSTIALA----LGVERTRSELLPFLTDTI--YDEDEVLLALAEQLGTFTTLVGGPEY 84 (588)
T ss_dssp HHHHHHHTT-CSCHHHHHHHHHTHHHHHHH----SCHHHHHHTHHHHHHHTC--CCCHHHHHHHHHHHTTCSGGGTSGGG
T ss_pred HHHHHHHhh-cccHHHHHHHHHhHHHHHHH----hCHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHhccCcHHH
Confidence 445555554 35778888888777665432 222 23334444444333 57889999999999877754322236
Q ss_pred CcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChh
Q 004960 116 WPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGA 195 (721)
Q Consensus 116 ~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~ 195 (721)
++.+++.+...+.++++..|..|..+++.+++..+.. ...+.+++.+.++.++ +++.+|..++.+++.+.......
T Consensus 85 ~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~--~~~~~l~~~l~~l~~~-~~~~~R~~a~~~l~~~~~~~~~~- 160 (588)
T 1b3u_A 85 VHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPS--DLEAHFVPLVKRLAGG-DWFTSRTSACGLFSVCYPRVSSA- 160 (588)
T ss_dssp GGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHH--HHHHTHHHHHHHHHTC-SSHHHHHHHGGGHHHHTTTSCHH-
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhcCHH-
Confidence 7889999999888889999999999999999766532 1234567777777777 78999999999999888765321
Q ss_pred hHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 004960 196 EVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISW 275 (721)
Q Consensus 196 ~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~ 275 (721)
..+.++..+...+.++++.+|..++..++.+++..+. ....+.+++.+...+.++ ++.+|..|+..+..
T Consensus 161 -------~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~--~~~vr~~a~~~l~~ 229 (588)
T 1b3u_A 161 -------VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL--DNVKSEIIPMFSNLASDE--QDSVRLLAVEACVN 229 (588)
T ss_dssp -------HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH--HHHHHTHHHHHHHHHTCS--CHHHHTTHHHHHHH
T ss_pred -------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcH--HhHHHHHHHHHHHHhcCC--cHHHHHHHHHHHHH
Confidence 1233444444467888999999999999999876543 123345556555555554 68899999999999
Q ss_pred HHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcCcc-ccHhHHHHHHhhhcCCChhhH
Q 004960 276 LAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKH-VFPPVFEFASVSCQNASPKYR 354 (721)
Q Consensus 276 l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~i~~~l~~~l~~~~~~~r 354 (721)
+++..+... +.+.+++.+...+.+ .+|.+|..+..++..++...++. ..+.+++.+.+.+++++|..|
T Consensus 230 l~~~~~~~~----~~~~~~~~l~~~~~d-------~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr 298 (588)
T 1b3u_A 230 IAQLLPQED----LEALVMPTLRQAAED-------KSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVR 298 (588)
T ss_dssp HHHHSCHHH----HHHHTHHHHHHHHTC-------SSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHH
T ss_pred HHHhCCHHH----HHHHHHHHHHHHccC-------CCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHH
Confidence 887643321 123444445444432 34889999999999999887743 346788888888999999999
Q ss_pred hHHHHHHHHHhhccHHHH--HHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCC
Q 004960 355 EAAVTAIGIISEGCAEWM--KEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDES 432 (721)
Q Consensus 355 ~~al~~l~~i~~~~~~~~--~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~ 432 (721)
.+++.+++.++...+... ..+.+.++|.+...++|+++.||..++++++.++..++... ..+.++|.+...++|++
T Consensus 299 ~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~p~l~~~l~d~~ 376 (588)
T 1b3u_A 299 AAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDN--TIEHLLPLFLAQLKDEC 376 (588)
T ss_dssp HHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHH--HHHHTHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhH--HHHHHHHHHHHHhCCCc
Confidence 999999999998765432 24677889999999999999999999999999998887532 35678888889999999
Q ss_pred hHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHhc
Q 004960 433 DEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVL 512 (721)
Q Consensus 433 ~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~ 512 (721)
+.||..++.+++.++...+.. .+.+.+++.+.+.+.+.++.+|..++.+++.++...|..+ +.+.++|.+...+.
T Consensus 377 ~~Vr~~a~~~l~~l~~~~~~~--~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~- 451 (588)
T 1b3u_A 377 PEVRLNIISNLDCVNEVIGIR--QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF--FDEKLNSLCMAWLV- 451 (588)
T ss_dssp HHHHHHHHTTCHHHHHHSCHH--HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGG--CCHHHHHHHHHGGG-
T ss_pred hHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHH--HHHHHHHHHHHHhc-
Confidence 999999999999998876542 2456778888888888899999999999999999888653 34567888877764
Q ss_pred cCchhhhhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHcccCcccchhhhHHHH
Q 004960 513 TNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLA 592 (721)
Q Consensus 513 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l 592 (721)
+++..+|..++.+++.++..+|++. +.+.+++.+....+++++.+|..++.+++.++..+|..+ |++.++|.+
T Consensus 452 --d~~~~Vr~~a~~~l~~l~~~~~~~~---~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~--~~~~~~~~l 524 (588)
T 1b3u_A 452 --DHVYAIREAATSNLKKLVEKFGKEW---AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDI--TTKHMLPTV 524 (588)
T ss_dssp --CSSHHHHHHHHHHHHHHHHHHCHHH---HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHH--HHHHTHHHH
T ss_pred --CCcHHHHHHHHHHHHHHHHHhCchh---HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHH--HHHHHHHHH
Confidence 3456788999999999998888642 256778888777888899999999999999999988753 788999999
Q ss_pred HhhccCCCCCccCCCCCccccccCCCCCCCCchhhhhccccceeeecchhhhHHHHHHHHHHHHHHccccccchHHHHHH
Q 004960 593 FSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLK 672 (721)
Q Consensus 593 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~ 672 (721)
++.+.. +..++|..++++++.++...+..+. -+.+.+
T Consensus 525 ~~~l~d-----------------------------------------~~~~Vr~~a~~~l~~l~~~~~~~~~--~~~~~p 561 (588)
T 1b3u_A 525 LRMAGD-----------------------------------------PVANVRFNVAKSLQKIGPILDNSTL--QSEVKP 561 (588)
T ss_dssp HHGGGC-----------------------------------------SCHHHHHHHHHHHHHHGGGSCHHHH--HHHHHH
T ss_pred HhhCCC-----------------------------------------CCchHHHHHHHHHHHHHHHhchhhh--HHHHHH
Confidence 876521 1135799999999999988876543 256778
Q ss_pred HHHhcccCCChhHHHHHHHHHHHH
Q 004960 673 ILVRHASYFHEDVRYQAVFALKNI 696 (721)
Q Consensus 673 ~l~~~~~~~~~~vr~~a~~~l~~l 696 (721)
.+.++++|.+.+||..|..+++.+
T Consensus 562 ~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 562 ILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCchhHHHHHHHHHHHh
Confidence 888888999999999999999875
No 18
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=100.00 E-value=3.4e-33 Score=305.82 Aligned_cols=535 Identities=15% Similarity=0.141 Sum_probs=421.0
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccccHHH
Q 004960 80 KQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFAD 159 (721)
Q Consensus 80 ~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~ 159 (721)
...+++.+.+ +++.+|..++..++.++....+...|++++|.+.+.. ++++..|..+..+++.+.+..+. ..+...
T Consensus 12 i~~l~~~l~s-~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~--~~~~~~ 87 (588)
T 1b3u_A 12 IAVLIDELRN-EDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGG--PEYVHC 87 (588)
T ss_dssp HHHHHHHTTC-SCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTS--GGGGGG
T ss_pred HHHHHHHhhc-ccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccCc--HHHHHH
Confidence 3467777875 7999999999999999875544446899999999887 66788999999999988765432 135577
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCccc
Q 004960 160 MQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAP 239 (721)
Q Consensus 160 l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~ 239 (721)
+++.+..++.+ +++.+|..|..++..+....+.. ..... ++..+.....++++..|..++.+++.++...+.
T Consensus 88 ll~~L~~l~~~-~~~~vR~~a~~~L~~l~~~~~~~----~~~~~---l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~ 159 (588)
T 1b3u_A 88 LLPPLESLATV-EETVVRDKAVESLRAISHEHSPS----DLEAH---FVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSS 159 (588)
T ss_dssp GHHHHHHHTTS-SCHHHHHHHHHHHHHHHTTSCHH----HHHHT---HHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCH
T ss_pred HHHHHHHHHhC-chHHHHHHHHHHHHHHHHHCCHH----HHHHH---HHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCH
Confidence 88888888888 89999999999999998876432 12222 233333455667888999999999998876653
Q ss_pred chhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHH
Q 004960 240 LLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAA 319 (721)
Q Consensus 240 ~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a 319 (721)
. ..+.+++.+...+.++ ++.+|..+++.++.+++..+... +.+.+++.+...+.+ +++.+|..|
T Consensus 160 ~---~~~~l~~~l~~l~~d~--~~~VR~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~~~d-------~~~~vr~~a 223 (588)
T 1b3u_A 160 A---VKAELRQYFRNLCSDD--TPMVRRAAASKLGEFAKVLELDN----VKSEIIPMFSNLASD-------EQDSVRLLA 223 (588)
T ss_dssp H---HHHHHHHHHHHHHTCS--CHHHHHHHHHHHHHHHHTSCHHH----HHHTHHHHHHHHHTC-------SCHHHHTTH
T ss_pred H---HHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHhcHHh----HHHHHHHHHHHHhcC-------CcHHHHHHH
Confidence 2 3455666666666555 78999999999999987644321 234555656555543 236889999
Q ss_pred HHHHHHHHHHcCc-cccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHH
Q 004960 320 AEVIDTMALNLAK-HVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAA 398 (721)
Q Consensus 320 ~~~l~~l~~~~~~-~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a 398 (721)
..++..++...++ ...+.+++.+...+++++|..|.+++.+++.++...+.. .+.+.+++.+...++|+++.||..|
T Consensus 224 ~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a 301 (588)
T 1b3u_A 224 VEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPE--ITKTDLVPAFQNLMKDCEAEVRAAA 301 (588)
T ss_dssp HHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHH--HHHHTHHHHHHHHHTCSSHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcc--cchhHHHHHHHHHhCCCcHHHHHHH
Confidence 9999999988874 345678888888889999999999999999999865432 2345788999999999999999999
Q ss_pred HHHHHHHHhhhhHHHH--HhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCChhH
Q 004960 399 SFALGQFAEYLQPEIV--SHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNL 476 (721)
Q Consensus 399 ~~~l~~l~~~~~~~~~--~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v 476 (721)
+++++.++...++... .+++.++|.+.+.+.++++.||..++++++.++..++... ..+.+++.+...+++.++.+
T Consensus 302 ~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~p~l~~~l~d~~~~V 379 (588)
T 1b3u_A 302 SHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDN--TIEHLLPLFLAQLKDECPEV 379 (588)
T ss_dssp HHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHH--HHHHTHHHHHHHHTCSCHHH
T ss_pred HHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhH--HHHHHHHHHHHHhCCCchHH
Confidence 9999999998765422 4678899999999999999999999999999998876532 34567777888888889999
Q ss_pred HHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccC
Q 004960 477 QETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFG 556 (721)
Q Consensus 477 ~~~~l~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~ 556 (721)
|..++.+++.+....+.. .+.+.++|.+...+. ++++++|..++.+++.++..+|++.+ .+.+++.+...++
T Consensus 380 r~~a~~~l~~l~~~~~~~--~~~~~~lp~l~~~~~---d~~~~vr~~~~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~ 451 (588)
T 1b3u_A 380 RLNIISNLDCVNEVIGIR--QLSQSLLPAIVELAE---DAKWRVRLAIIEYMPLLAGQLGVEFF---DEKLNSLCMAWLV 451 (588)
T ss_dssp HHHHHTTCHHHHHHSCHH--HHHHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHHHHHCGGGC---CHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHcCHHHH---HHHHHHHHHHHhc
Confidence 999999999998876643 245667787777663 45678899999999999988887533 4678899999999
Q ss_pred CCChhhHHHHHHHHHHHHHHcccCcccchhhhHHHHHhhccCCCCCccCCCCCccccccCCCCCCCCchhhhhcccccee
Q 004960 557 LEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNIS 636 (721)
Q Consensus 557 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (721)
++++.+|..+..+++.++..+|..+ +++.++|.+....+
T Consensus 452 d~~~~Vr~~a~~~l~~l~~~~~~~~--~~~~llp~l~~~~~--------------------------------------- 490 (588)
T 1b3u_A 452 DHVYAIREAATSNLKKLVEKFGKEW--AHATIIPKVLAMSG--------------------------------------- 490 (588)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHCHHH--HHHHTHHHHHHTTT---------------------------------------
T ss_pred CCcHHHHHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHhh---------------------------------------
Confidence 9999999999999999999998864 46788888875321
Q ss_pred eecchhhhHHHHHHHHHHHHHHccccccchHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHH
Q 004960 637 VRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTA 699 (721)
Q Consensus 637 ~~~~~~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~ 699 (721)
+.....|..++++++.++..++.. .|.+.+++.+.+.++|.++.||..++++++.+.+.
T Consensus 491 --~~~~~~R~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 549 (588)
T 1b3u_A 491 --DPNYLHRMTTLFCINVLSEVCGQD--ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPI 549 (588)
T ss_dssp --CSCHHHHHHHHHHHHHHHHHHHHH--HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGG
T ss_pred --CCCHHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHH
Confidence 112357999999999999988864 37889999999999999999999999999998764
No 19
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.97 E-value=1.6e-27 Score=275.79 Aligned_cols=500 Identities=14% Similarity=0.144 Sum_probs=338.0
Q ss_pred ChhHHHHHHHHhcCC--ChHHHHHHHHHHHHHhcCCCcHHHHHHHHh-cCCChhHHHHHHHHHHHhhhhhhcCCCHHHHH
Q 004960 1 MAQSLELLLIQFLMP--DNDARRQAEDQIKRLAKDPQVVPALVQHLR-TAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQ 77 (721)
Q Consensus 1 m~~~l~~ll~~~~s~--d~~~r~~A~~~L~~~~~~p~~~~~l~~il~-~~~~~~vr~~a~~~l~~~i~~~w~~~~~~~~~ 77 (721)
|.+++.+++..+++| |++.|++|+++|++++++|+++..+..++. .+.++.+|++|+++|++.++++|..++++.+.
T Consensus 9 ~~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~ 88 (1204)
T 3a6p_A 9 LCEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKCPICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKV 88 (1204)
T ss_dssp HHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHH
T ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhCchHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence 556788999999988 778899999999999999988888888776 45689999999999999999999999999999
Q ss_pred HHHHHHHHHHhhc------CCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhh
Q 004960 78 LVKQSLIESITLE------HSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQ 151 (721)
Q Consensus 78 ~i~~~ll~~l~~e------~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~ 151 (721)
.||+.+++.+.+. .++.+|++++.+++.|+..++| ..||++++.+.+.+++ ++..++.++.+|..+++....
T Consensus 89 ~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p-~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~ 166 (1204)
T 3a6p_A 89 YLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP-QHWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVT 166 (1204)
T ss_dssp HHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHcc
Confidence 9999999998864 4689999999999999999999 4899999999999976 556788999999999876321
Q ss_pred --------------cccccHHHHHHHHHHhhCCC------------------CCHHHHHHHHHHH---------------
Q 004960 152 --------------TFRPHFADMQALLLKCLQDE------------------TSNRVRIAALKAI--------------- 184 (721)
Q Consensus 152 --------------~~~~~~~~l~~~l~~~l~~~------------------~~~~vr~~a~~~l--------------- 184 (721)
.+...++.+++.+.+.+++. ++..++..+++++
T Consensus 167 ~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~ 246 (1204)
T 3a6p_A 167 FQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAE 246 (1204)
T ss_dssp SCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHTT
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHHhc
Confidence 11222344444444443220 1122344444444
Q ss_pred -------------------------HHhhhhcCChhhHHHHHhhHH----HHHHHHHHHh--------hcCCHHHHHHHH
Q 004960 185 -------------------------GSFLEFTNDGAEVVKFREFIP----SILNVSRQCL--------ASGEEDVAVIAF 227 (721)
Q Consensus 185 -------------------------~~l~~~~~~~~~~~~~~~~l~----~ll~~l~~~l--------~~~~~~~~~~a~ 227 (721)
..++.....+.+ ...++. ..+..+.... .+.+.+..+..+
T Consensus 247 ~~~ll~~l~~~l~~~~lr~~A~ecL~~i~s~~~~~~~---~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~ 323 (1204)
T 3a6p_A 247 NCKLLEILCLLLNEQELQLGAAECLLIAVSRKGKLED---RKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLC 323 (1204)
T ss_dssp TSHHHHHHHHGGGCTTTHHHHHHHHHHHHTCCSCHHH---HGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHH
T ss_pred cchHHHHHHHHcCCHHHHHHHHHHHHHHHhCCCChhh---HHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHH
Confidence 444432211110 111111 1111111111 111234455555
Q ss_pred HHHHHHhcCccc--------chhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhH----hhhhhcCChHHHHH
Q 004960 228 EIFDELIESPAP--------LLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKY----NSLKKHKLVIPILQ 295 (721)
Q Consensus 228 ~~l~~l~~~~~~--------~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~----~~~~~~~~~~~il~ 295 (721)
+.+..+.+.... .....+..+++.++..+.++ +..+...++.+|..+.+... ..+ .++++.+++
T Consensus 324 ~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~--~~~vs~~~l~fW~~ll~~~~~~~~~~~--~~~l~~Ll~ 399 (1204)
T 3a6p_A 324 QVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHP--SQFLRSSTQMTWGALFRHEILSRDPLL--LAIIPKYLR 399 (1204)
T ss_dssp HHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSS--CHHHHHHHHHHHHHHHSCTTTTTCHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCc--cHHhHHHHHHHHHHHHhcccccccHHH--HHHHHHHHH
Confidence 555555422111 12344567788888887776 67788889999998876531 111 134667777
Q ss_pred HH---HhhhccCCCCC----------CC-------CCCcHHHHHHHHHHHHHHHcCccccHhHHHHHHhhhc--------
Q 004960 296 VM---CPLLAESNEAG----------ED-------DDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQ-------- 347 (721)
Q Consensus 296 ~l---~~~l~~~~~~~----------~~-------~~~~~~~~a~~~l~~l~~~~~~~~~~~i~~~l~~~l~-------- 347 (721)
.+ +..+..+++++ .| +.++.|+.....+..++...+...++.+.+.+.+.+.
T Consensus 400 vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~~l~~v~~~l~~~l~~~l~~~~~ 479 (1204)
T 3a6p_A 400 ASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSV 479 (1204)
T ss_dssp HHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTCC------
T ss_pred HHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhhccccc
Confidence 77 44444433211 11 0135566777888888877775555555555533322
Q ss_pred -----------------CCChhhHhHHHHHHHHHhhccHHHHH-H-----hHHHHHHHHHhhcCCCCHhHHHHHHHHHHH
Q 004960 348 -----------------NASPKYREAAVTAIGIISEGCAEWMK-E-----KLESVLHIVLGALRDPEQFVRGAASFALGQ 404 (721)
Q Consensus 348 -----------------~~~~~~r~~al~~l~~i~~~~~~~~~-~-----~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~ 404 (721)
++.|...++....+.+++.++.+... + ..+.+++.+... +..+|.+|..++.+++.
T Consensus 480 ~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~-~~~~p~l~~~~i~~l~~ 558 (1204)
T 3a6p_A 480 NSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNF-DTKDPLILSCVLTNVSA 558 (1204)
T ss_dssp -----------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHC-CCSCHHHHHHHHHHHHH
T ss_pred ccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhC-CCCChHHHHHHHHHHHH
Confidence 23567788888888888877643221 1 234444443332 44689999999999999
Q ss_pred HHhhhhHHHHHhhhhHHHHHHHhccC------------CChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCC
Q 004960 405 FAEYLQPEIVSHYESVLPCILNALED------------ESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENS 472 (721)
Q Consensus 405 l~~~~~~~~~~~~~~~l~~l~~~l~~------------~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~ 472 (721)
++.++.. ...+++.++..++..+.+ .+.++|..|+.++..+++.++..+.||++.+.+.+..++...
T Consensus 559 l~~~~~~-~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~ 637 (1204)
T 3a6p_A 559 LFPFVTY-RPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNE 637 (1204)
T ss_dssp HGGGGGT-CGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHST
T ss_pred HHHHHhc-CchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCc
Confidence 9998753 235788899988888766 224799999999999999999999999999999999988755
Q ss_pred C---hhHHHHHHHHHHHHHHHhh--hcchhhHHHHHHHHHHHHh
Q 004960 473 P---RNLQETCMSAIGSVAAAAE--QAFIPYAERVLELLKIFMV 511 (721)
Q Consensus 473 ~---~~v~~~~l~~l~~l~~~~~--~~~~~~~~~i~~~l~~~l~ 511 (721)
. ..-+....++++.++...+ +....|+..+++.+.+.+.
T Consensus 638 ~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w~ 681 (1204)
T 3a6p_A 638 LLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVASIWL 681 (1204)
T ss_dssp TTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHS
T ss_pred ccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHc
Confidence 4 5556677777777744332 3334567777777766663
No 20
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.90 E-value=1.6e-20 Score=198.67 Aligned_cols=405 Identities=14% Similarity=0.099 Sum_probs=306.5
Q ss_pred hhcCCHHHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhH--------h-hhh
Q 004960 215 LASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKY--------N-SLK 285 (721)
Q Consensus 215 l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~--------~-~~~ 285 (721)
+.+++.++|+.|-+.|.++.... .+.++..++..+.+.+.+..+|..|...+..+++... . +..
T Consensus 10 ~~s~d~~~r~~Ae~~L~~~~~~~-------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~ 82 (462)
T 1ibr_B 10 TVSPDRLELEAAQKFLERAAVEN-------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLA 82 (462)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHT
T ss_pred hcCCCHHHHHHHHHHHHHHHhhC-------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhc
Confidence 44678899999999988865421 2344444455555555578899999998888874310 0 000
Q ss_pred -hcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcCc-cccHhHHHHHHhhhcCC--ChhhHhHHHHHH
Q 004960 286 -KHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAK-HVFPPVFEFASVSCQNA--SPKYREAAVTAI 361 (721)
Q Consensus 286 -~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~i~~~l~~~l~~~--~~~~r~~al~~l 361 (721)
..+....+-..+++.+.+.+ ..+ ..+..++..++....+ ..++.+++.+.+.+.++ ++..|++++.++
T Consensus 83 l~~~~~~~ik~~ll~~l~~~~-------~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l 154 (462)
T 1ibr_B 83 IDANARREVKNYVLQTLGTET-------YRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAI 154 (462)
T ss_dssp SCHHHHHHHHHHHHHHTTCCC-------SSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCC-------chh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 00112335555666665433 234 6677888888876543 36788999999999888 999999999999
Q ss_pred HHHhhcc-HHHHHHhHHHHHHHHHhhcCCC--CHhHHHHHHHHHHHHHhhhhHHHHH--hhhhHHHHHHHhccCCChHHH
Q 004960 362 GIISEGC-AEWMKEKLESVLHIVLGALRDP--EQFVRGAASFALGQFAEYLQPEIVS--HYESVLPCILNALEDESDEVK 436 (721)
Q Consensus 362 ~~i~~~~-~~~~~~~l~~i~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~~~~~--~~~~~l~~l~~~l~~~~~~v~ 436 (721)
+.+.+.. ++.+.++.+.+++.+...++|+ ++.||..|+++++.+...+.+.... ....+++.+.+.+.+++..+|
T Consensus 155 ~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr 234 (462)
T 1ibr_B 155 GYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVR 234 (462)
T ss_dssp HHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHH
Confidence 9999865 5556677888999999999988 7999999999999987665433211 112357777777888889999
Q ss_pred HHHHHHHHHHHHhhhhccccchH-HHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhh---------------------hc
Q 004960 437 EKSYYALAAFCEDMGEEILPFLD-PLMGKLLAALENSPRNLQETCMSAIGSVAAAAE---------------------QA 494 (721)
Q Consensus 437 ~~a~~al~~l~~~~~~~~~~~~~-~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~---------------------~~ 494 (721)
..++.+|..++...+..+.+|++ .+++.+...+.+.+..++..+++.++.++.... ..
T Consensus 235 ~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (462)
T 1ibr_B 235 VAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFY 314 (462)
T ss_dssp HHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHH
Confidence 99999999999999888889999 999999999999899999999999998887631 12
Q ss_pred chhhHHHHHHHHHHHHhcc----CchhhhhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCChhhHHHHHHHH
Q 004960 495 FIPYAERVLELLKIFMVLT----NDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFF 570 (721)
Q Consensus 495 ~~~~~~~i~~~l~~~l~~~----~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l 570 (721)
+.+|++.++|.+.+.+... .++++..|..+..+++.++..+|. ..++.+++.+...++++++.+|..++.++
T Consensus 315 ~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~----~~~~~~~~~l~~~l~~~~~~~r~aal~~l 390 (462)
T 1ibr_B 315 AKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED----DIVPHVLPFIKEHIKNPDWRYRDAAVMAF 390 (462)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT----THHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH----HHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 3356788889888877543 123457888999999999988863 34577888888888889999999999999
Q ss_pred HHHHHHcc-cCcccchhhhHHHHHhhccCCCCCccCCCCCccccccCCCCCCCCchhhhhccccceeeecchhhhHHHHH
Q 004960 571 SNIAGVLE-DGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAAT 649 (721)
Q Consensus 571 ~~l~~~~~-~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~ 649 (721)
+.++...+ ..+.++++.++|.++..+.. +...+|..|+
T Consensus 391 ~~l~~~~~~~~~~~~l~~~~~~l~~~l~d-----------------------------------------~~~~Vr~~a~ 429 (462)
T 1ibr_B 391 GCILEGPEPSQLKPLVIQAMPTLIELMKD-----------------------------------------PSVVVRDTAA 429 (462)
T ss_dssp HHTSSSSCTTTTCTTTTTHHHHHHHGGGC-----------------------------------------SCHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHHHhcC-----------------------------------------CCHHHHHHHH
Confidence 99998555 45788999999999976631 1245799999
Q ss_pred HHHHHHHHHccccc--cchHHHHHHHHHhccc
Q 004960 650 QALGLFALHTKSSY--APFLEESLKILVRHAS 679 (721)
Q Consensus 650 ~~l~~~~~~~~~~~--~~~~~~~~~~l~~~~~ 679 (721)
++++.++..+++.+ .+|++.+++.|.+.++
T Consensus 430 ~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L~ 461 (462)
T 1ibr_B 430 WTVGRICELLPEAAINDVYLAPLLQCLIEGLS 461 (462)
T ss_dssp HHHHHHHHHGGGGCCSTTTHHHHHHHHHCC--
T ss_pred HHHHHHHHhcccccccHHHHHHHHHHHHHHhc
Confidence 99999999998876 5899999999987764
No 21
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.90 E-value=6.7e-19 Score=203.10 Aligned_cols=642 Identities=9% Similarity=0.073 Sum_probs=395.5
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHh-----cCCCcHHHHHHHHhcCC-----ChhHHHHHHHHHHHhhhh--hhcCC
Q 004960 4 SLELLLIQFLMPDNDARRQAEDQIKRLA-----KDPQVVPALVQHLRTAK-----TPNVRQLAAVLLRKKITG--HWAKL 71 (721)
Q Consensus 4 ~l~~ll~~~~s~d~~~r~~A~~~L~~~~-----~~p~~~~~l~~il~~~~-----~~~vr~~a~~~l~~~i~~--~w~~~ 71 (721)
.+.+++....+....+|++.-+.+..+. ..|+++..+...+.++. ++..+..+...|+..... .|.
T Consensus 86 ~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~-- 163 (971)
T 2x1g_F 86 KILESIVRFAGGPKIVLNRLCISLGAYIVHMLGEWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIH-- 163 (971)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTCC------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccC--
Confidence 3444444443345789999888887643 24677777777775531 456677777777765432 222
Q ss_pred CHHH-----------HHHHHHHHHHHHhhcCC-------HHHHHHHHHHHHHHHcc-ccCCCCCcchHHHHHHhcc----
Q 004960 72 SPQL-----------KQLVKQSLIESITLEHS-------APVRRASANVVSIIAKY-AVPAGEWPDLLPFLFQFSQ---- 128 (721)
Q Consensus 72 ~~~~-----------~~~i~~~ll~~l~~e~~-------~~vr~~~~~~l~~i~~~-~~~~~~~~~ll~~l~~~l~---- 128 (721)
+.+- ...+.+.+.+.+....+ ..++..+..++...+.. ..|.+....+++.+++ +.
T Consensus 164 ~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~~~~~ll~~l~~-L~~~~~ 242 (971)
T 2x1g_F 164 TSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIEGCVTITAVLLE-VVHKCY 242 (971)
T ss_dssp CSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHH-HHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCccccccHHHHHHh-hhhhhc
Confidence 1111 12233333344432122 26888888888877663 3343334567887777 41
Q ss_pred ------------CCcHHHHHHHHHHHHHhhhhhh-hcccccHHHHHHHHHH-------hhCCCCC---HHHHHHHHHHHH
Q 004960 129 ------------SEQEEHREVALILFSSLTETIG-QTFRPHFADMQALLLK-------CLQDETS---NRVRIAALKAIG 185 (721)
Q Consensus 129 ------------~~~~~~~~~al~~l~~i~~~~~-~~~~~~~~~l~~~l~~-------~l~~~~~---~~vr~~a~~~l~ 185 (721)
.+++..+..|+.++..++.... ....+.+..+++.+.. .+.+ .+ .......++.+.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~d~~~~~~~~~l~~l~~ 321 (971)
T 2x1g_F 243 WPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWK-RENDNEDIIVHIYMLFV 321 (971)
T ss_dssp SSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSS-SSCSCSHHHHHHHHHHH
T ss_pred cccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhc-ccccchHHHHHHHHHHH
Confidence 1356888999999999997422 1122233333333322 2344 34 255656667666
Q ss_pred HhhhhcCChhh------HHHHHhhHHHHHHHHHHHhhc-----CCHHHHHHHHHHHHHHhcCc------------ccchh
Q 004960 186 SFLEFTNDGAE------VVKFREFIPSILNVSRQCLAS-----GEEDVAVIAFEIFDELIESP------------APLLG 242 (721)
Q Consensus 186 ~l~~~~~~~~~------~~~~~~~l~~ll~~l~~~l~~-----~~~~~~~~a~~~l~~l~~~~------------~~~~~ 242 (721)
.+.+....... .......+..+++.+..+... .++++...++++|..+++.. ...+.
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~ 401 (971)
T 2x1g_F 322 SSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIK 401 (971)
T ss_dssp HHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 66543211000 000123445556655555532 47788999999998876511 13345
Q ss_pred hhHHHHHHHHHHhhcCCCC------Ch-------HHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCC
Q 004960 243 DSVKSIVHFSLEVSSSHNL------EP-------NTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGE 309 (721)
Q Consensus 243 ~~~~~l~~~~~~~~~~~~~------~~-------~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~ 309 (721)
+++..+++.++..+..++. ++ ..|..+.+++..++...+. ..++.+++.+-..+..... .
T Consensus 402 ~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~-----~~l~~~~~~l~~~l~~~~~--~ 474 (971)
T 2x1g_F 402 PLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLND-----YILEILAAMLDEAIADLQR--H 474 (971)
T ss_dssp HHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTT-----HHHHHHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHhccC--C
Confidence 6677777776665532211 11 3456666676666643321 1233444444444432110 0
Q ss_pred CCCCcHHHHHHHHHHHHHHHcCc---cccHhHHHHHHhhhc-CCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHh
Q 004960 310 DDDLAPDRAAAEVIDTMALNLAK---HVFPPVFEFASVSCQ-NASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLG 385 (721)
Q Consensus 310 ~~~~~~~~~a~~~l~~l~~~~~~---~~~~~i~~~l~~~l~-~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~ 385 (721)
..+|..++++..++..+++...+ ..++.+++.+..... +.+...|..+++++|.+++..... ..+++.+++.++.
T Consensus 475 ~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~-~~~l~~vl~~l~~ 553 (971)
T 2x1g_F 475 PTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMEN-PAYIPPAINLLVR 553 (971)
T ss_dssp TTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHH
Confidence 13589999999999998876652 345666664433332 347889999999999998765433 2678899999998
Q ss_pred hcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCC--ChHHHHHHHHHHHHHHHhhh-hccccchHHHH
Q 004960 386 ALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDE--SDEVKEKSYYALAAFCEDMG-EEILPFLDPLM 462 (721)
Q Consensus 386 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~--~~~v~~~a~~al~~l~~~~~-~~~~~~~~~i~ 462 (721)
.+ | +.|+..|++++..+++.++..+.+|+++++..+.+.+..+ +...+..+..+++.++...+ +...+|+..++
T Consensus 554 ~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll 630 (971)
T 2x1g_F 554 GL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIV 630 (971)
T ss_dssp HH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHH
T ss_pred Hh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 88 4 8899999999999999998888999999999999999874 46789999999999998764 45556666655
Q ss_pred HHHHH----hhcCC--ChhHHHH---HHHHHHHHHHHhh-------------hcchhhHHHHHHHHHHHHhccCchhhhh
Q 004960 463 GKLLA----ALENS--PRNLQET---CMSAIGSVAAAAE-------------QAFIPYAERVLELLKIFMVLTNDEDLRS 520 (721)
Q Consensus 463 ~~l~~----~l~~~--~~~v~~~---~l~~l~~l~~~~~-------------~~~~~~~~~i~~~l~~~l~~~~~~~~~~ 520 (721)
+.+.. ..+.. +...+.. ++..++.++...+ +.+.+|.+.++|.+...++... .+..+
T Consensus 631 ~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~-~~~~v 709 (971)
T 2x1g_F 631 SPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWV-EEIDV 709 (971)
T ss_dssp HHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTT-TCHHH
T ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhcc-ccHHH
Confidence 55554 33333 3323344 4444455544443 2456788999999988886532 23356
Q ss_pred HHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHcccC--cccchhhhHHHHH----h
Q 004960 521 RARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDG--FAQYLPLVVPLAF----S 594 (721)
Q Consensus 521 ~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~--~~~~l~~i~~~ll----~ 594 (721)
.+.++.+++.++..+|. .+.|+++.+++.++..++.... ..++.+++.++..+|.+ ..+.+..+++.+. +
T Consensus 710 ~e~~~~~~~~~~~~~~~-~~~p~l~~~~~~l~~~~~~~~~---~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~ 785 (971)
T 2x1g_F 710 LEAACSAMKHAITNLRS-SFQPMLQDLCLFIVASFQTRCC---APTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFK 785 (971)
T ss_dssp HHHHHHHHHHHHHHHHC---CTHHHHHHHHHHHHCC--CC---HHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhh-hccccHHHHHHHHHHHHhcCCc---hHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHH
Confidence 77889999999888876 6899999999999988875321 45889999999988874 3444444444433 2
Q ss_pred hccCCCCCccCCCCCccccccCCCCCCCCchhhhhccccceeeecchhhhHHHHHHHHHHHHHHcccccc--ch-HHHHH
Q 004960 595 SCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYA--PF-LEESL 671 (721)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~~~~~~--~~-~~~~~ 671 (721)
.++...+ + ......+.+...+..++.++.+++..+. |. ++.++
T Consensus 786 ~l~~~~~--------~--------------------------~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~~~l~~i~ 831 (971)
T 2x1g_F 786 LFESTPE--------Q--------------------------NFSNISDTMETFFGCLTQIIKKIPQVLEDKTLAYDRLV 831 (971)
T ss_dssp HHTSCTT--------T--------------------------HHHHTHHHHHHHHHHHHHHHHSSGGGGGCTTSCHHHHH
T ss_pred HHhcccc--------c--------------------------CCccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHH
Confidence 2221000 0 0012346889999999999999998876 77 89999
Q ss_pred HHHHhcccCCChhHHHHHHHHHHHHHHH
Q 004960 672 KILVRHASYFHEDVRYQAVFALKNILTA 699 (721)
Q Consensus 672 ~~l~~~~~~~~~~vr~~a~~~l~~l~~~ 699 (721)
+.....+...+....++++..+..++..
T Consensus 832 ~~~~~~l~~~~~~~~~s~~~fl~~~i~~ 859 (971)
T 2x1g_F 832 FYAQRGMTLPESGAIRNSIQFLTHFVMQ 859 (971)
T ss_dssp HHHHHHHTSSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHhc
Confidence 9988887777777788888888776654
No 22
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.89 E-value=2e-20 Score=197.02 Aligned_cols=401 Identities=15% Similarity=0.137 Sum_probs=280.6
Q ss_pred CCCcch---HHHHHHhccCCcHHHHHHHHHHHHHhhhhh-hhcccccHH--HHHHHHHHhhCCCCCHHHHHHHHHHHHHh
Q 004960 114 GEWPDL---LPFLFQFSQSEQEEHREVALILFSSLTETI-GQTFRPHFA--DMQALLLKCLQDETSNRVRIAALKAIGSF 187 (721)
Q Consensus 114 ~~~~~l---l~~l~~~l~~~~~~~~~~al~~l~~i~~~~-~~~~~~~~~--~l~~~l~~~l~~~~~~~vr~~a~~~l~~l 187 (721)
..|++. ++.+.+.++++++..|..|+.+++.++... .......+. .+++.+.+.+.++.++.+|..|++++..+
T Consensus 13 ~~w~~~~~~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l 92 (450)
T 2jdq_A 13 MEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNI 92 (450)
T ss_dssp ---------CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHH
T ss_pred HhhccccccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 479887 999999999999999999999999987521 111222222 68889999998833899999999999999
Q ss_pred hhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcccchhhhH-HHHHHHHHHhhcCCCCChHHH
Q 004960 188 LEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSV-KSIVHFSLEVSSSHNLEPNTR 266 (721)
Q Consensus 188 ~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~r 266 (721)
.....+..........+|.++. .+.+++++++..|+++|..++...+......+ ..+++.++..+.+. .+..+|
T Consensus 93 ~~~~~~~~~~~~~~~~i~~L~~----lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~-~~~~v~ 167 (450)
T 2jdq_A 93 ASGNSLQTRIVIQAGAVPIFIE----LLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQ-NRLTMT 167 (450)
T ss_dssp HSSCHHHHHHHHHTTHHHHHHH----HTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSC-CCHHHH
T ss_pred hcCCHHHHHHHHhCCCHHHHHH----HHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCC-CCHHHH
Confidence 8753221111111345666655 67778999999999999999987644322222 13455566666542 368899
Q ss_pred HHHHHHHHHHHHHh-HhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcCc---cc-cHhHHHH
Q 004960 267 HQAIQIISWLAKYK-YNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAK---HV-FPPVFEF 341 (721)
Q Consensus 267 ~~a~~~l~~l~~~~-~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~---~~-~~~i~~~ 341 (721)
..+++++..++... +.. .......+++.++..+...+ ...+..+..++..++...++ .+ -..+++.
T Consensus 168 ~~a~~~L~~l~~~~~~~~--~~~~~~~~l~~L~~~l~~~~-------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 238 (450)
T 2jdq_A 168 RNAVWALSNLCRGKSPPP--EFAKVSPCLNVLSWLLFVSD-------TDVLADACWALSYLSDGPNDKIQAVIDAGVCRR 238 (450)
T ss_dssp HHHHHHHHHHHCCSSSCC--CGGGTGGGHHHHHHHTTCCC-------HHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHH
T ss_pred HHHHHHHHHHhCCCCCCC--CHHHHHHHHHHHHHHHccCC-------HHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHH
Confidence 99999999999643 211 11224566777777776432 46777888888888753321 11 1246777
Q ss_pred HHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhH-HHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhh-hh
Q 004960 342 ASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKL-ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY-ES 419 (721)
Q Consensus 342 l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~ 419 (721)
+...+.++++..|..++.+++.++.+.+......+ ..+++.+.+.++++++.+|..|+++|++++...+......+ .+
T Consensus 239 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ 318 (450)
T 2jdq_A 239 LVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDAN 318 (450)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred HHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCC
Confidence 77788899999999999999999988765433333 25889999999999999999999999999976544444444 48
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHHHhh-hhccccch-HHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhc---
Q 004960 420 VLPCILNALEDESDEVKEKSYYALAAFCEDM-GEEILPFL-DPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQA--- 494 (721)
Q Consensus 420 ~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~-~~~~~~~~-~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~~--- 494 (721)
++|.+++.+.++++.+|..++++|++++... ++.....+ ..+++.|..++.+.+..++..++.++..++...+..
T Consensus 319 ~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~ 398 (450)
T 2jdq_A 319 IFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKR 398 (450)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhc
Confidence 9999999999999999999999999999763 23333232 368889999999999999999999999998865432
Q ss_pred ----chhhHHHH-----HHHHHHHHhccCchhhhhHHHHHHHHHHH
Q 004960 495 ----FIPYAERV-----LELLKIFMVLTNDEDLRSRARATELLGLV 531 (721)
Q Consensus 495 ----~~~~~~~i-----~~~l~~~l~~~~~~~~~~~~~~~~~l~~l 531 (721)
..+|...+ ++.+..+. .+++..++..++..+..+
T Consensus 399 ~~~~~~~~~~~l~~~g~~~~l~~l~---~~~~~~v~~~a~~~l~~~ 441 (450)
T 2jdq_A 399 NGTGINPYCALIEEAYGLDKIEFLQ---SHENQEIYQKAFDLIEHY 441 (450)
T ss_dssp SCSCCCHHHHHHHHHHCHHHHHHHH---CHHHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHcCcHHHHHHHH---cCCCHHHHHHHHHHHHHH
Confidence 23555554 34444433 234445666666655544
No 23
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.89 E-value=3e-18 Score=197.86 Aligned_cols=639 Identities=12% Similarity=0.085 Sum_probs=410.9
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHhc------CCCcHHHHHHHHhcC----CChhHHHHHHHHHHHhhhhh----h--
Q 004960 5 LELLLIQFLMPDNDARRQAEDQIKRLAK------DPQVVPALVQHLRTA----KTPNVRQLAAVLLRKKITGH----W-- 68 (721)
Q Consensus 5 l~~ll~~~~s~d~~~r~~A~~~L~~~~~------~p~~~~~l~~il~~~----~~~~vr~~a~~~l~~~i~~~----w-- 68 (721)
+.+++....+..+.+|++.-..+..+.. .|+++..+...+.++ +++..+..+...|+...... +
T Consensus 105 ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~ 184 (963)
T 2x19_B 105 LFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQ 184 (963)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC--
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcH
Confidence 4444444322357889988888866432 377888888877541 24556777777766654321 1
Q ss_pred ------cCCCHHHHHHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHH
Q 004960 69 ------AKLSPQLKQLVKQSLIESITLEH-SAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALIL 141 (721)
Q Consensus 69 ------~~~~~~~~~~i~~~ll~~l~~e~-~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~ 141 (721)
+..-....+.+.+.+.+.+.... +..++..+..++...+....+...++.+++.+++.+. ++..+..++.+
T Consensus 185 ~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~~~~~~ll~~l~~~l~--~~~~~~~a~~~ 262 (963)
T 2x19_B 185 YRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQDCEALIQAAFAALQ--DSELFDSSVEA 262 (963)
T ss_dssp -------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCCGGGTHHHHHHHHHHTT--STTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHhC--CchHHHHHHHH
Confidence 00001233445555555554322 2247777778877665533322245789999998885 56788999999
Q ss_pred HHHhhhhhh-hcccccHHHHHHHHHH-------hhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHH---HHhhHHHHHHH
Q 004960 142 FSSLTETIG-QTFRPHFADMQALLLK-------CLQDETSNRVRIAALKAIGSFLEFTNDGAEVVK---FREFIPSILNV 210 (721)
Q Consensus 142 l~~i~~~~~-~~~~~~~~~l~~~l~~-------~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~---~~~~l~~ll~~ 210 (721)
+..++.... ....+.+..+++.+.. .+.+ .+.......++.+..+.+..... ... ..+.+..+++.
T Consensus 263 l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~d~~~~~~~~~l~~~~~~~~~~~--l~~~~~~~~~~~~~l~~ 339 (963)
T 2x19_B 263 IVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQN-GDMETSHGICRIAVALGENHSRA--LLDQVEHWQSFLALVNM 339 (963)
T ss_dssp HHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHH--HHHCGGGHHHHHHHHHH
T ss_pred HHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHhHHH--HHcCccchHHHHHHHHH
Confidence 999987432 2223334444443332 2233 44455555556666555432110 000 11334455555
Q ss_pred HHHHhhc-----CCHHHHHHHHHHHHHHhcCc-----------ccchhhhHHHHHHHHHHhhcCCCC------C------
Q 004960 211 SRQCLAS-----GEEDVAVIAFEIFDELIESP-----------APLLGDSVKSIVHFSLEVSSSHNL------E------ 262 (721)
Q Consensus 211 l~~~l~~-----~~~~~~~~a~~~l~~l~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~~------~------ 262 (721)
+..+... .++++...++..|..+++.. ...+.+++..+++.++..+..++. +
T Consensus 340 ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~ 419 (963)
T 2x19_B 340 IMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQ 419 (963)
T ss_dssp HHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHH
T ss_pred HHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHH
Confidence 5555553 35667888888888887621 223456666677666655532210 1
Q ss_pred -hHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcCc---cccHhH
Q 004960 263 -PNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAK---HVFPPV 338 (721)
Q Consensus 263 -~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~---~~~~~i 338 (721)
.+.|..+.+++..++...+.. .++.+++.+-..+.... ...+|..+.++..+++.++....+ ..++.+
T Consensus 420 ~~~~r~~~~~~L~~~~~~~~~~-----~l~~~~~~l~~~l~~~~---~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l 491 (963)
T 2x19_B 420 FRIYRVDISDTLMYVYEMLGAE-----LLSNLYDKLGRLLTSSE---EPYSWQHTEALLYGFQSIAETIDVNYSDVVPGL 491 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHH-----HHHHHHHHHHHHHHTCC---CSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccHH-----HHHHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHhhcCchhhHHHHHH
Confidence 023555666666666543322 23344444444443221 123588999999999999887653 345566
Q ss_pred HHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhh
Q 004960 339 FEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYE 418 (721)
Q Consensus 339 ~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 418 (721)
++.+.. +.++++..|..+++++|.+++..... .++++.+++.++..+++ +.|+..|++++..+++.++..+.+|++
T Consensus 492 ~~~l~~-l~~~~~~vr~~~~~~l~~~~~~l~~~-~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~ 567 (963)
T 2x19_B 492 IGLIPR-ISISNVQLADTVMFTIGALSEWLADH-PVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAA 567 (963)
T ss_dssp HHHGGG-SCCCSHHHHHHHHHHHHHTHHHHHHC-HHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHH
T ss_pred HHHHHh-CCCCcHHHHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 664433 34467889999999999998765432 25688889999999975 899999999999999988877778999
Q ss_pred hHHHHHHHhccCC--ChHHHHHHHHHHHHHHHhhh-hccccchHHHHHHHHHhhc----CC-ChhHH---HHHHHHHHHH
Q 004960 419 SVLPCILNALEDE--SDEVKEKSYYALAAFCEDMG-EEILPFLDPLMGKLLAALE----NS-PRNLQ---ETCMSAIGSV 487 (721)
Q Consensus 419 ~~l~~l~~~l~~~--~~~v~~~a~~al~~l~~~~~-~~~~~~~~~i~~~l~~~l~----~~-~~~v~---~~~l~~l~~l 487 (721)
+++..+.+.+... +...+..+..+++.++...+ +...+|++.+++.+...+. .+ ++..+ ...+++++.+
T Consensus 568 ~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i 647 (963)
T 2x19_B 568 NIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNL 647 (963)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 9999998888753 46789999999999998775 6677888888877776654 22 33333 3677788888
Q ss_pred HHHhhh----------------------cchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhccCChH
Q 004960 488 AAAAEQ----------------------AFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILP 545 (721)
Q Consensus 488 ~~~~~~----------------------~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 545 (721)
+...+. .+.++++.++|.+...++... .+..+...+..+++.+...+|. .+.|+++
T Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~v~e~~~~~l~~~~~~~~~-~~~~~l~ 725 (963)
T 2x19_B 648 FTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWL-NDAQVVEAVCAIFEKSVKTLLD-DFAPMVP 725 (963)
T ss_dssp HHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHSSS-TTGGGHH
T ss_pred HHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhcc-CchHHHHHHHHHHHHHHHhhcc-cccccHH
Confidence 877652 145578889998888876532 2235667788888888888875 6789999
Q ss_pred HHHHHHHhccCCCChhhHHHHHHHHHHHHHHccc--CcccchhhhHHHHHhhccCCCCCccCCCCCccccccCCCCCCCC
Q 004960 546 PFVEAAISGFGLEFSELREYTHGFFSNIAGVLED--GFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSD 623 (721)
Q Consensus 546 ~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~--~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (721)
.+++.++..++... ....+.+++.++..+|. .+.++++.++..++...-. .+.+ .
T Consensus 726 ~~~~~l~~~~~~~~---~~~~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~------~~~~----~---------- 782 (963)
T 2x19_B 726 QLCEMLGRMYSTIP---QASALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLT------LFQQ----G---------- 782 (963)
T ss_dssp HHHHHHHHHHHHSC---CHHHHHHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHH------HHHH----C----------
T ss_pred HHHHHHHHHHHcCC---ccHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHH------HHhh----C----------
Confidence 99998877665311 12466777888874443 4666776666665543200 0000 0
Q ss_pred chhhhhccccceeeecchhhhHHHHHHHHHHHHHHcccccc--ch-HHHHHHHHHhcccCCChhHHHHHHHHHHHHHHH
Q 004960 624 DEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYA--PF-LEESLKILVRHASYFHEDVRYQAVFALKNILTA 699 (721)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~ 699 (721)
-....+.+...+.+++.++.+++..+. |. +..+++.+...+++.+..+.+.++..+..++..
T Consensus 783 --------------~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~ 847 (963)
T 2x19_B 783 --------------PRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPR 847 (963)
T ss_dssp --------------TTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGG
T ss_pred --------------cccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc
Confidence 001246789999999999999987764 55 899999999999888999999999999998864
No 24
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.87 E-value=4.6e-17 Score=175.53 Aligned_cols=624 Identities=14% Similarity=0.082 Sum_probs=397.5
Q ss_pred CChHHHHHHHHHHHHHhcCC----------CcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhh------cCCC-----H
Q 004960 15 PDNDARRQAEDQIKRLAKDP----------QVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHW------AKLS-----P 73 (721)
Q Consensus 15 ~d~~~r~~A~~~L~~~~~~p----------~~~~~l~~il~~~~~~~vr~~a~~~l~~~i~~~w------~~~~-----~ 73 (721)
.|.+..-.|-..|.++-+.- =-++.+..++.. .++++-..++.++.+.+...- ..-+ +
T Consensus 62 ~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (810)
T 3now_A 62 KDQDIYVNMVHLVAALCENSVERTKGVLTELGVPWFMRVLDQ-KHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCT 140 (810)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHC-CSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHH
T ss_pred CchhHHHHHHHHHHHHHhccHHHHHHHHHHcCHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHh
Confidence 56778888888887766542 124567777765 455566666666666654211 1112 1
Q ss_pred H---HHHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHccccCCCCCcc------hHHHHHHhccC-C----------cH
Q 004960 74 Q---LKQLVKQSLIESITLE-HSAPVRRASANVVSIIAKYAVPAGEWPD------LLPFLFQFSQS-E----------QE 132 (721)
Q Consensus 74 ~---~~~~i~~~ll~~l~~e-~~~~vr~~~~~~l~~i~~~~~~~~~~~~------ll~~l~~~l~~-~----------~~ 132 (721)
+ ....+...|+..+.+. -+...|..+...+..-+-+.- ..|++ -+..+.+.... + ..
T Consensus 141 ~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~l~v~~~~~~~~~~~~~~~~~ 218 (810)
T 3now_A 141 RNNREIDTLLTCLVYSITDRTISGAARDGVIELITRNVHYTA--LEWAERLVEIRGLCRLLDVCSELEDYKYESAMDITG 218 (810)
T ss_dssp HTHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTCTT--TTHHHHHHHTTHHHHHHHHHTCCSSSCCSSCCCCCT
T ss_pred hhhhHHHHHHHHHHHHhhccccChhhHHHHHHHHHHhCCccc--cccccchhhHhhHHHHHHHHhcCccccccccCCCCh
Confidence 2 2233444555555532 367788888888776653221 12332 12233332221 1 34
Q ss_pred HHHHHHHHHHHHhhhhhh-hcccccHHHHH-HHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHH-HHhhHHHHHH
Q 004960 133 EHREVALILFSSLTETIG-QTFRPHFADMQ-ALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVK-FREFIPSILN 209 (721)
Q Consensus 133 ~~~~~al~~l~~i~~~~~-~~~~~~~~~l~-~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~~l~~ll~ 209 (721)
+.|..+..++..+.+... +.-...+.+.+ ..+...+.. ++.+-+..|++++..+.....+...... -.+.+|.++.
T Consensus 219 ~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~ 297 (810)
T 3now_A 219 SSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLA-PDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILA 297 (810)
T ss_dssp THHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhcc-CChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHH
Confidence 789999999999998764 11123333333 333344455 6777788889999988775433211111 1355666665
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhc--
Q 004960 210 VSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKH-- 287 (721)
Q Consensus 210 ~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~-- 287 (721)
.+.++++.++..|.+.++..+... ..-.-....-++.+...+.++ ++.+|..|+..|..+...........
T Consensus 298 ----Ll~s~~~~~q~~A~~al~~aa~~~-~~R~~I~~~gv~~L~~Ll~s~--~~~vr~~Al~~L~kl~s~~~~d~~~~~~ 370 (810)
T 3now_A 298 ----MATTDDELQQRVACECLIAASSKK-DKAKALCEQGVDILKRLYHSK--NDGIRVRALVGLCKLGSYGGQDAAIRPF 370 (810)
T ss_dssp ----HHHSSCHHHHHHHHHHHHHHTTSH-HHHHTTHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTTTTTTSCCSS
T ss_pred ----HhCCCCHHHHHHHHHHHHHHcCCc-HHHHHHHHcCcHHHHHHHcCC--CHHHHHHHHHHHHHhccccccCccccch
Confidence 667788999999999999987662 222222233346666666544 56788888887776653211000001
Q ss_pred --CChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcC--cccc--HhHHHHHHhhhcCCChhhHhHHHHHH
Q 004960 288 --KLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA--KHVF--PPVFEFASVSCQNASPKYREAAVTAI 361 (721)
Q Consensus 288 --~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~--~~~~--~~i~~~l~~~l~~~~~~~r~~al~~l 361 (721)
.-+..+++.+..+|.+.. .+...+..|.++|..++.... ..+. ..+++.+.+.+++.+....+.+++++
T Consensus 371 ~~g~i~~Lv~~l~~lL~~~~-----~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L 445 (810)
T 3now_A 371 GDGAALKLAEACRRFLIKPG-----KDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTF 445 (810)
T ss_dssp TTTHHHHHHHHHHHHHHCSS-----CCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred hhccHHHHHHHHHHHhcCCC-----CCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHH
Confidence 124677888888888752 124578889999999875433 2222 35777788888888899999999999
Q ss_pred HHHhhccH----------------------------HHHH----HhH-HHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhh
Q 004960 362 GIISEGCA----------------------------EWMK----EKL-ESVLHIVLGALRDPEQFVRGAASFALGQFAEY 408 (721)
Q Consensus 362 ~~i~~~~~----------------------------~~~~----~~l-~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 408 (721)
++++.+.. +... ..+ ...+|.+..+++++++.+|..|+|+|++++..
T Consensus 446 ~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d 525 (810)
T 3now_A 446 VNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL 525 (810)
T ss_dssp HHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS
T ss_pred HHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 99997531 1111 111 25689999999999999999999999999965
Q ss_pred hhHHHHHhh--hhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhcc-cc--chHHHHHHHHHhhcCC-ChhHHHHHHH
Q 004960 409 LQPEIVSHY--ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEI-LP--FLDPLMGKLLAALENS-PRNLQETCMS 482 (721)
Q Consensus 409 ~~~~~~~~~--~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~-~~--~~~~i~~~l~~~l~~~-~~~v~~~~l~ 482 (721)
- .....+ .+.+|.|+..+.+.++.++..|+++|.+++....+.. .+ ...+.++.|..++.++ +...+..++.
T Consensus 526 ~--~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~ 603 (810)
T 3now_A 526 K--ELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLM 603 (810)
T ss_dssp H--HHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHH
T ss_pred H--HHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHH
Confidence 2 233322 5899999999999989999999999999987654322 11 1245788899988765 3344567889
Q ss_pred HHHHHHHHhhhcchhhH-HHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhccCCh--HHHHHHHHhccCCCC
Q 004960 483 AIGSVAAAAEQAFIPYA-ERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPIL--PPFVEAAISGFGLEF 559 (721)
Q Consensus 483 ~l~~l~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~~i~~~l~~~l~~~~ 559 (721)
++++++....+.-.... ...+|.|..++... +..++..+.++++.++. +++....++ ...++.++..++.++
T Consensus 604 AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~---~~~Vq~~A~~~L~NLa~--~~~~~~~~v~~~g~l~~Lv~LL~s~d 678 (810)
T 3now_A 604 ALTNLASMNESVRQRIIKEQGVSKIEYYLMED---HLYLTRAAAQCLCNLVM--SEDVIKMFEGNNDRVKFLALLCEDED 678 (810)
T ss_dssp HHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSC---CTTHHHHHHHHHHHHTT--SHHHHHHHHSSSSHHHHHHHGGGCSS
T ss_pred HHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC---CHHHHHHHHHHHHHHhC--ChHHHHHHHhccCcHHHHHHHhcCCC
Confidence 99988865322111111 12566777776542 34578889999999874 222211111 246778888888889
Q ss_pred hhhHHHHHHHHHHHHHHcccCcccch--hhhHHHHHhhccCCCCCccCCCCCccccccCCCCCCCCchhhhhccccceee
Q 004960 560 SELREYTHGFFSNIAGVLEDGFAQYL--PLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISV 637 (721)
Q Consensus 560 ~~~~~~~~~~l~~l~~~~~~~~~~~l--~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (721)
..++..+..+++.++..........+ ...+|.|+..+..
T Consensus 679 ~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s--------------------------------------- 719 (810)
T 3now_A 679 EETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIAN--------------------------------------- 719 (810)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTC---------------------------------------
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCC---------------------------------------
Confidence 99999999999999874333332223 3566777655431
Q ss_pred ecchhhhHHHHHHHHHHHHHHccccccchHH--HHHHHHHhcccC---CChhHHHHHHHHHHHHHHHHHHhc
Q 004960 638 RTGVLDEKAAATQALGLFALHTKSSYAPFLE--ESLKILVRHASY---FHEDVRYQAVFALKNILTAAHAIF 704 (721)
Q Consensus 638 ~~~~~~~k~~a~~~l~~~~~~~~~~~~~~~~--~~~~~l~~~~~~---~~~~vr~~a~~~l~~l~~~~~~~~ 704 (721)
...+.|..|+++++.++.+.++ ...++. ..++.|..++.. .+..|++.|.++|..+++ ++.+-
T Consensus 720 --~d~~vq~~A~~aL~NL~~~s~e-~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~-~g~~~ 787 (810)
T 3now_A 720 --PSPAVQHRGIVIILNMINAGEE-IAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAER-YRIIE 787 (810)
T ss_dssp --SSHHHHHHHHHHHHHHHTTCHH-HHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHH-HHTC-
T ss_pred --CCHHHHHHHHHHHHHHHhCCHH-HHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHh-CCCcc
Confidence 2235689999999999875443 334443 477788888754 478999999999999986 44433
No 25
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.87 E-value=2.8e-17 Score=188.56 Aligned_cols=562 Identities=11% Similarity=0.119 Sum_probs=353.7
Q ss_pred HHHHhcC--CChHHHHHHHHHHHHHhc---C--------C-C---cH-HHHHHHHhcCCChhHHHHHHHHHHHhhhhhhc
Q 004960 8 LLIQFLM--PDNDARRQAEDQIKRLAK---D--------P-Q---VV-PALVQHLRTAKTPNVRQLAAVLLRKKITGHWA 69 (721)
Q Consensus 8 ll~~~~s--~d~~~r~~A~~~L~~~~~---~--------p-~---~~-~~l~~il~~~~~~~vr~~a~~~l~~~i~~~w~ 69 (721)
+++.+.+ .+.++|..|...|++..+ . | + .+ ..+++.+.+. +..+|...+..+....+..|.
T Consensus 40 L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~~ll~~l~~~-~~~ir~~l~~~ia~ia~~d~p 118 (960)
T 1wa5_C 40 LLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMISL-PNNLQVQIGEAISSIADSDFP 118 (960)
T ss_dssp HHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHhhCc
Confidence 4444433 467899999999976431 0 1 1 12 3566666664 488999999888887765332
Q ss_pred -CCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHccccC--C--CCCcc-------hHHHH-------HHhccCC
Q 004960 70 -KLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVP--A--GEWPD-------LLPFL-------FQFSQSE 130 (721)
Q Consensus 70 -~~~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~--~--~~~~~-------ll~~l-------~~~l~~~ 130 (721)
.+| .+...+++.+.+ ++...+..+..++..+.+.... . ..+++ ..+.+ .+.++++
T Consensus 119 ~~Wp-----~ll~~L~~~l~s-~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~ 192 (960)
T 1wa5_C 119 DRWP-----TLLSDLASRLSN-DDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITAN 192 (960)
T ss_dssp TTCT-----THHHHHHTTCCS-SCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred cchh-----HHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 122 233445555554 4666677777788877753211 0 01111 12212 2224432
Q ss_pred cH---HHH------HHHHHHHHHhhh-hhhhcccccHHHHHHHHHHhhCCC-----CC---------HHHHHHHHHHHHH
Q 004960 131 QE---EHR------EVALILFSSLTE-TIGQTFRPHFADMQALLLKCLQDE-----TS---------NRVRIAALKAIGS 186 (721)
Q Consensus 131 ~~---~~~------~~al~~l~~i~~-~~~~~~~~~~~~l~~~l~~~l~~~-----~~---------~~vr~~a~~~l~~ 186 (721)
.. ..+ ..++.++..+.. ..++.+...+..+++.+.+.+... .+ ..+|..++.++..
T Consensus 193 ~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~ 272 (960)
T 1wa5_C 193 ENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQL 272 (960)
T ss_dssp C--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHH
Confidence 21 122 224444443321 123334455677777777766420 01 3578888999988
Q ss_pred hhhhcCChhhHHHHHhhHHHHHHHHHHHhh-----cCCHHHHHHHHHHHHHHhcCcc--cchh--hhHHHHH-HHHHHhh
Q 004960 187 FLEFTNDGAEVVKFREFIPSILNVSRQCLA-----SGEEDVAVIAFEIFDELIESPA--PLLG--DSVKSIV-HFSLEVS 256 (721)
Q Consensus 187 l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~-----~~~~~~~~~a~~~l~~l~~~~~--~~~~--~~~~~l~-~~~~~~~ 256 (721)
+.+...+ .+..+++.+++.....+. ..+++++..++.+|..+++... ..+. ++++.++ ..++..+
T Consensus 273 l~~~~~~-----~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m 347 (960)
T 1wa5_C 273 YTTRYED-----VFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNV 347 (960)
T ss_dssp HHHHCHH-----HHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHH
T ss_pred HHHHHHH-----HHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhc
Confidence 8876532 245566667666555553 3456789999999999886542 3333 5666666 3443332
Q ss_pred c----C-----------------CCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcH
Q 004960 257 S----S-----------------HNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAP 315 (721)
Q Consensus 257 ~----~-----------------~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~ 315 (721)
. + .+.....|..|..++..++...++.+ ++.+++.+...+.....+ ...+|..
T Consensus 348 ~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~v-----~~~~l~~i~~~l~~~~~~-~~~~w~~ 421 (960)
T 1wa5_C 348 TLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLV-----TNIFLAHMKGFVDQYMSD-PSKNWKF 421 (960)
T ss_dssp SCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHH-----HHHHHHHHHHHHHHHHC-----CHHH
T ss_pred CCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchhH-----HHHHHHHHHHHHHHhccC-cchhHHH
Confidence 1 0 01112578888899999988765432 445555555555432111 1235899
Q ss_pred HHHHHHHHHHHHHHc-----C-c------cccHhHHHHHHhhhcCC---ChhhHhHHHHHHHHHhhccHHHHHHhHHHHH
Q 004960 316 DRAAAEVIDTMALNL-----A-K------HVFPPVFEFASVSCQNA---SPKYREAAVTAIGIISEGCAEWMKEKLESVL 380 (721)
Q Consensus 316 ~~~a~~~l~~l~~~~-----~-~------~~~~~i~~~l~~~l~~~---~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~ 380 (721)
+++|..+++.++... + . .+.+.+...+...+.++ ++..|.++++++|.+++.... .++..++
T Consensus 422 reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~---~~l~~~l 498 (960)
T 1wa5_C 422 KDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTK---AQLIELM 498 (960)
T ss_dssp HHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCH---HHHHHHH
Confidence 999999999997542 1 1 11122233344445665 888999999999999987632 4688899
Q ss_pred HHHHhhcCCCCHhHHHHHHHHHHHHHhhh-----------hHHHHHhhhhHHHHHHHhccCCC---hH--HHHHHHHHHH
Q 004960 381 HIVLGALRDPEQFVRGAASFALGQFAEYL-----------QPEIVSHYESVLPCILNALEDES---DE--VKEKSYYALA 444 (721)
Q Consensus 381 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-----------~~~~~~~~~~~l~~l~~~l~~~~---~~--v~~~a~~al~ 444 (721)
+.++..+.|+++.||..|++++.++++.. ...+.+|++++++.++..++... .. ....+..+++
T Consensus 499 ~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~ 578 (960)
T 1wa5_C 499 PILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIF 578 (960)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHH
T ss_pred HHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHH
Confidence 99999999999999999999999998742 24466899999999999888741 11 3467899999
Q ss_pred HHHHhhhhccccchHHHHHHHHHhhcC-----CChhHHHHHHHHHHHHHHHhh-hcchhhHHHHHHHHHHHHhccCchhh
Q 004960 445 AFCEDMGEEILPFLDPLMGKLLAALEN-----SPRNLQETCMSAIGSVAAAAE-QAFIPYAERVLELLKIFMVLTNDEDL 518 (721)
Q Consensus 445 ~l~~~~~~~~~~~~~~i~~~l~~~l~~-----~~~~v~~~~l~~l~~l~~~~~-~~~~~~~~~i~~~l~~~l~~~~~~~~ 518 (721)
.++...++.+.||++.+++.+...+.. .++..+..++++++.++...+ +.+.++.+.++|.+...++....
T Consensus 579 ~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~--- 655 (960)
T 1wa5_C 579 RVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQ--- 655 (960)
T ss_dssp HHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCT---
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhH---
Confidence 999999999999999999988877653 256777889999999998744 56778888999998888865322
Q ss_pred hhHHHHHHHHHHHHHhhchhhccC-------------------Ch---------------------HHHHHHHHhccCCC
Q 004960 519 RSRARATELLGLVAESVGRARMEP-------------------IL---------------------PPFVEAAISGFGLE 558 (721)
Q Consensus 519 ~~~~~~~~~l~~l~~~~~~~~~~~-------------------~~---------------------~~i~~~l~~~l~~~ 558 (721)
.....++..++.+.... +.+.+ ++ ..++..+...+.++
T Consensus 656 ~~~~~~~~i~~~l~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 733 (960)
T 1wa5_C 656 EFIPYVFQIIAFVVEQS--ATIPESIKPLAQPLLAPNVWELKGNIPAVTRLLKSFIKTDSSIFPDLVPVLGIFQRLIASK 733 (960)
T ss_dssp TTHHHHHHHHHHHHHHC--SSCCTTTGGGHHHHTSGGGGCCTTTHHHHHHHHHHHHHHHGGGCSCSHHHHHHHHHHHTCT
T ss_pred hhHHHHHHHHHHHHHhc--cCCCHHHHHHHHHHcCHHHhcCCCCchhHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCC
Confidence 23334555555444321 01111 11 22222222222222
Q ss_pred ChhhHHHHHHHHHHHHHHcccC-cccchhhhHHHHHhhcc
Q 004960 559 FSELREYTHGFFSNIAGVLEDG-FAQYLPLVVPLAFSSCN 597 (721)
Q Consensus 559 ~~~~~~~~~~~l~~l~~~~~~~-~~~~l~~i~~~ll~~~~ 597 (721)
. ....++.+++.++..+|.. |.||++.+++.++..++
T Consensus 734 ~--~~~~a~~ll~~i~~~~~~~~~~~yl~~i~~~l~~~l~ 771 (960)
T 1wa5_C 734 A--YEVHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQ 771 (960)
T ss_dssp T--THHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHGGG
T ss_pred c--ccchHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHh
Confidence 2 2367899999999999988 99999999999998764
No 26
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.86 E-value=4.9e-17 Score=175.31 Aligned_cols=633 Identities=13% Similarity=0.062 Sum_probs=402.9
Q ss_pred hHHHHHHHHhc--CCChHHHHHHHHHHHHHhcC---------CCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhcCC
Q 004960 3 QSLELLLIQFL--MPDNDARRQAEDQIKRLAKD---------PQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKL 71 (721)
Q Consensus 3 ~~l~~ll~~~~--s~d~~~r~~A~~~L~~~~~~---------p~~~~~l~~il~~~~~~~vr~~a~~~l~~~i~~~w~~~ 71 (721)
..+.+.++.++ +.|.+.|.+|-+.|--+... .+.+..+..++.+..++++...|.-.|-....++-...
T Consensus 6 ~kv~~m~~i~~~~~~~~~~~~~a~~nl~vl~re~aga~~i~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~~~~r~ 85 (810)
T 3now_A 6 TKVKQMMDLTFDLATPIDKRRAAANNLVVLAKEQTGAELLYKDHCIAKVASLTKVEKDQDIYVNMVHLVAALCENSVERT 85 (810)
T ss_dssp HHHHHHHHHHHSSCCSSHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHcccccCHHHHHHHHhhceeeeccccchHHHHhCchHHHHHHHHhccCchhHHHHHHHHHHHHHhccHHHH
Confidence 45666677775 55889999999888655432 24467777777766789999888877777765531110
Q ss_pred CHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHc----cccCCC-------------CCcchHHHHHHhccCCc--H
Q 004960 72 SPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAK----YAVPAG-------------EWPDLLPFLFQFSQSEQ--E 132 (721)
Q Consensus 72 ~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~----~~~~~~-------------~~~~ll~~l~~~l~~~~--~ 132 (721)
..-.+..=.+++.+.+.+ .++.+...++.++..+.. .+.... ....++..|.+.+.+.. .
T Consensus 86 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 164 (810)
T 3now_A 86 KGVLTELGVPWFMRVLDQ-KHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDRTISG 164 (810)
T ss_dssp HHHHHHSCHHHHHHHHHC-CSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTCTTSCH
T ss_pred HHHHHHcCHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhhccccCh
Confidence 000011112357777776 577777777777766543 222111 12345667777776653 4
Q ss_pred HHHHHHHHHHHHhhhhh----hhcccccHHHHHHHHHHhhCCC---------CCHHHHHHHHHHHHHhhhhcCChhhHHH
Q 004960 133 EHREVALILFSSLTETI----GQTFRPHFADMQALLLKCLQDE---------TSNRVRIAALKAIGSFLEFTNDGAEVVK 199 (721)
Q Consensus 133 ~~~~~al~~l~~i~~~~----~~~~~~~~~~l~~~l~~~l~~~---------~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 199 (721)
..|..++..+..-+... +..+.. ...+..++.-+-+-+ -..++|..+.-++.++.+..........
T Consensus 165 ~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~ 243 (810)
T 3now_A 165 AARDGVIELITRNVHYTALEWAERLVE-IRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYYDEAKAR 243 (810)
T ss_dssp HHHHHHHHHHHHHTTCTTTTHHHHHHH-TTHHHHHHHHHTCCSSSCCSSCCCCCTTHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred hhHHHHHHHHHHhCCccccccccchhh-HhhHHHHHHHHhcCccccccccCCCChhHHHHHHHHHHHHHHHhccchhHHH
Confidence 67788888776655221 111110 012222222221110 1457999999999999887753333333
Q ss_pred HHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcccchhhhH--HHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 004960 200 FREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSV--KSIVHFSLEVSSSHNLEPNTRHQAIQIISWLA 277 (721)
Q Consensus 200 ~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~ 277 (721)
+...+..++. ..+...+.+....|++.+..+....+..-...+ ...++.++..+.++ ++.++..|.+.+..++
T Consensus 244 ~~~~~~~~~~---~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~--~~~~q~~A~~al~~aa 318 (810)
T 3now_A 244 FTDQIDEYIK---DKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTD--DELQQRVACECLIAAS 318 (810)
T ss_dssp HHHHHHHHHH---HHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSS--CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHH---HHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCC--CHHHHHHHHHHHHHHc
Confidence 4444444433 355567778888999999999887654433322 24556666666666 6888999999999877
Q ss_pred HHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcC---c-cc-----cHhHHHHHHhhhcC
Q 004960 278 KYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA---K-HV-----FPPVFEFASVSCQN 348 (721)
Q Consensus 278 ~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~---~-~~-----~~~i~~~l~~~l~~ 348 (721)
.... .+. ..++.-++.+..++...+ ...+.-|..+|..++...+ + .. +..+++.+.+.+.+
T Consensus 319 ~~~~--~R~-~I~~~gv~~L~~Ll~s~~-------~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~ 388 (810)
T 3now_A 319 SKKD--KAK-ALCEQGVDILKRLYHSKN-------DGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIK 388 (810)
T ss_dssp TSHH--HHH-TTHHHHHHHHHHHTTCSC-------HHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHC
T ss_pred CCcH--HHH-HHHHcCcHHHHHHHcCCC-------HHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcC
Confidence 5421 111 122222255555555322 3456667777777764322 1 12 35678888888888
Q ss_pred C--ChhhHhHHHHHHHHHhhccHHHHHHh-HHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhh---------------
Q 004960 349 A--SPKYREAAVTAIGIISEGCAEWMKEK-LESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQ--------------- 410 (721)
Q Consensus 349 ~--~~~~r~~al~~l~~i~~~~~~~~~~~-l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--------------- 410 (721)
+ +...|..|++++++++........-. -...+|.++.+++++++.+++.|+++|++++....
T Consensus 389 ~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s 468 (810)
T 3now_A 389 PGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFA 468 (810)
T ss_dssp SSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTT
T ss_pred CCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHh
Confidence 7 88999999999999997654222111 14688889999988999999999999999997431
Q ss_pred -------------HHH----HHhh-hhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccch-HHHHHHHHHhhcC
Q 004960 411 -------------PEI----VSHY-ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFL-DPLMGKLLAALEN 471 (721)
Q Consensus 411 -------------~~~----~~~~-~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~-~~i~~~l~~~l~~ 471 (721)
+.. ...+ .+.+|.|++.+.++++.+|..|+++|.+++.... .-.... .+.++.|..++.+
T Consensus 469 ~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~-~r~~Vv~~Gaip~Lv~LL~s 547 (810)
T 3now_A 469 KQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKE-LRGKVVQEGGVKALLRMALE 547 (810)
T ss_dssp CCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHH-HHHHHHHTTHHHHHHHHHHS
T ss_pred hccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-HHHHHHHCCCHHHHHHHHcc
Confidence 001 1112 4789999999999999999999999999985432 111112 2678888999999
Q ss_pred CChhHHHHHHHHHHHHHHHhhhc--chhh-HHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhc--hhhccCChHH
Q 004960 472 SPRNLQETCMSAIGSVAAAAEQA--FIPY-AERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVG--RARMEPILPP 546 (721)
Q Consensus 472 ~~~~v~~~~l~~l~~l~~~~~~~--~~~~-~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~--~~~~~~~~~~ 546 (721)
++...++.+..++++++...... |..+ ....+|.|..++... .+...+..++.+++.++..-. .+.+.. ..
T Consensus 548 ~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~--~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~--aG 623 (810)
T 3now_A 548 GTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQD--CTALENFESLMALTNLASMNESVRQRIIK--EQ 623 (810)
T ss_dssp SCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTT--SCHHHHHHHHHHHHHHTTSCHHHHHHHHH--TT
T ss_pred CCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCC--CcHHHHHHHHHHHHHHhcCCHHHHHHHHH--cC
Confidence 99999999999999988653322 2111 234677777777532 122223457777777763211 111111 12
Q ss_pred HHHHHHhccCCCChhhHHHHHHHHHHHHHHcccCcccch--hhhHHHHHhhccCCCCCccCCCCCccccccCCCCCCCCc
Q 004960 547 FVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYL--PLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDD 624 (721)
Q Consensus 547 i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l--~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (721)
.++.+...+.++++.++..+..++++++..-. ....+. ...+|.|+..+..
T Consensus 624 ~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~-~~~~~v~~~g~l~~Lv~LL~s-------------------------- 676 (810)
T 3now_A 624 GVSKIEYYLMEDHLYLTRAAAQCLCNLVMSED-VIKMFEGNNDRVKFLALLCED-------------------------- 676 (810)
T ss_dssp HHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHH-HHHHHHSSSSHHHHHHHGGGC--------------------------
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhCChH-HHHHHHhccCcHHHHHHHhcC--------------------------
Confidence 45555565667788999999999999975221 222222 2456666654421
Q ss_pred hhhhhccccceeeecchhhhHHHHHHHHHHHHHHccccccchHH--HHHHHHHhcccCCChhHHHHHHHHHHHHHHH
Q 004960 625 EAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLE--ESLKILVRHASYFHEDVRYQAVFALKNILTA 699 (721)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~ 699 (721)
...++|..|+++|+.++...++.....+. ..++.|..++.+.++++|..|+.++..+...
T Consensus 677 ---------------~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~ 738 (810)
T 3now_A 677 ---------------EDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA 738 (810)
T ss_dssp ---------------SSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT
T ss_pred ---------------CCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC
Confidence 22357899999999998865555444443 5788899999999999999999999999863
No 27
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.86 E-value=1.8e-19 Score=189.69 Aligned_cols=392 Identities=11% Similarity=0.101 Sum_probs=277.5
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHccc-cCCC----CCcchHHHHHHhccCC-cHHHHHHHHHHHHHhhhhhhhccc
Q 004960 81 QSLIESITLEHSAPVRRASANVVSIIAKYA-VPAG----EWPDLLPFLFQFSQSE-QEEHREVALILFSSLTETIGQTFR 154 (721)
Q Consensus 81 ~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~-~~~~----~~~~ll~~l~~~l~~~-~~~~~~~al~~l~~i~~~~~~~~~ 154 (721)
..+++.+.+ +++.+|..++..+..+.... .+.. .-+.++|.+.+.++++ ++..+..++.+++.++...++...
T Consensus 23 ~~l~~~l~s-~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 23 SDMIEMIFS-KSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp HHHHHHHHS-SCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 456677765 78999999999999886522 1110 0126899999999988 889999999999999864332221
Q ss_pred cc-HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhc-CCHHHHHHHHHHHHH
Q 004960 155 PH-FADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLAS-GEEDVAVIAFEIFDE 232 (721)
Q Consensus 155 ~~-~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~-~~~~~~~~a~~~l~~ 232 (721)
.. -..+++.+.+++.+ +++.+|..|+++|+++....+.......-...+|.++. .+.+ .+++++..+++++..
T Consensus 102 ~~~~~~~i~~L~~lL~~-~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~----~l~~~~~~~v~~~a~~~L~~ 176 (450)
T 2jdq_A 102 IVIQAGAVPIFIELLSS-EFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQ----LFSKQNRLTMTRNAVWALSN 176 (450)
T ss_dssp HHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHH----HTTSCCCHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHH----HhcCCCCHHHHHHHHHHHHH
Confidence 11 14678999999998 89999999999999998754221111111356666666 5553 688999999999999
Q ss_pred HhcCc-ccchhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCC
Q 004960 233 LIESP-APLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDD 311 (721)
Q Consensus 233 l~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~ 311 (721)
+.... +..-...+..+++.+...+.+. ++.++..+++.+..++...+...... .-..+++.++.++.+.
T Consensus 177 l~~~~~~~~~~~~~~~~l~~L~~~l~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~-~~~~~i~~L~~ll~~~------- 246 (450)
T 2jdq_A 177 LCRGKSPPPEFAKVSPCLNVLSWLLFVS--DTDVLADACWALSYLSDGPNDKIQAV-IDAGVCRRLVELLMHN------- 246 (450)
T ss_dssp HHCCSSSCCCGGGTGGGHHHHHHHTTCC--CHHHHHHHHHHHHHHTSSSHHHHHHH-HHTTTHHHHHHHTTCS-------
T ss_pred HhCCCCCCCCHHHHHHHHHHHHHHHccC--CHHHHHHHHHHHHHHHCCCcHHHHHH-HHcCcHHHHHHHHCCC-------
Confidence 99764 3221222344555555566554 68899999999999986433221100 0113455566666533
Q ss_pred CCcHHHHHHHHHHHHHHHcCc---ccc-HhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhH-HHHHHHHHhh
Q 004960 312 DLAPDRAAAEVIDTMALNLAK---HVF-PPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKL-ESVLHIVLGA 386 (721)
Q Consensus 312 ~~~~~~~a~~~l~~l~~~~~~---~~~-~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l-~~i~~~l~~~ 386 (721)
++..+..+..++..++...+. .++ ..+++.+.+.+.++++..|..++++++.++.+.+......+ ..+++.++..
T Consensus 247 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~ 326 (450)
T 2jdq_A 247 DYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISI 326 (450)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH
Confidence 267888888888888754331 111 24778888889999999999999999999987766555444 3788899999
Q ss_pred cCCCCHhHHHHHHHHHHHHHhhhhHHHHH-hh-hhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhc-------cccc
Q 004960 387 LRDPEQFVRGAASFALGQFAEYLQPEIVS-HY-ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEE-------ILPF 457 (721)
Q Consensus 387 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~-~~-~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~-------~~~~ 457 (721)
+.++++.||..|+++|++++....+.... .+ .++++.|++.+.+.++.++..++++|.+++...+.. +.+|
T Consensus 327 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~ 406 (450)
T 2jdq_A 327 LQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPY 406 (450)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHH
T ss_pred HhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHH
Confidence 99999999999999999999864333233 33 479999999999999999999999999999866432 3456
Q ss_pred hHHH-----HHHHHHhhcCCChhHHHHHHHHHHHHH
Q 004960 458 LDPL-----MGKLLAALENSPRNLQETCMSAIGSVA 488 (721)
Q Consensus 458 ~~~i-----~~~l~~~l~~~~~~v~~~~l~~l~~l~ 488 (721)
...+ ++.|..+..+++..+++.++.++..+.
T Consensus 407 ~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 407 CALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 442 (450)
T ss_dssp HHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 6555 566666666667777777777666554
No 28
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.86 E-value=6.2e-19 Score=190.24 Aligned_cols=470 Identities=13% Similarity=0.174 Sum_probs=318.4
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHhc-CCCcHHHHHHHHh---cCCChhHHHHHHHHHHHhhhhhhcCCCHHHHHHHH
Q 004960 5 LELLLIQFLMPDNDARRQAEDQIKRLAK-DPQVVPALVQHLR---TAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVK 80 (721)
Q Consensus 5 l~~ll~~~~s~d~~~r~~A~~~L~~~~~-~p~~~~~l~~il~---~~~~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i~ 80 (721)
+-++++.+.++|.+.|+.+.-.+..+.+ +|+......+.+. +++++.+|..|...+.+. ..++..+.+.
T Consensus 51 ~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i-------~~~~~~~~l~ 123 (591)
T 2vgl_B 51 FPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCI-------RVDKITEYLC 123 (591)
T ss_dssp HHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTC-------CSGGGHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcC-------ChHHHHHHHH
Confidence 3344554555666666666666655544 4444333333332 234566666665554443 1455666677
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHccccCCCCCc--chHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhc-ccccH
Q 004960 81 QSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWP--DLLPFLFQFSQSEQEEHREVALILFSSLTETIGQT-FRPHF 157 (721)
Q Consensus 81 ~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~~--~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~-~~~~~ 157 (721)
..+.+++. ++++.||+.++.++..+++.. | +.++ ++++.+.+++.++++.++..|+.+++.++...++. .....
T Consensus 124 ~~l~~~L~-d~~~~VRk~A~~al~~i~~~~-p-~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~ 200 (591)
T 2vgl_B 124 EPLRKCLK-DEDPYVRKTAAVCVAKLHDIN-A-QMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLN 200 (591)
T ss_dssp HHHHHHSS-CSCHHHHHHHHHHHHHHHHSS-C-CCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCH
T ss_pred HHHHHHcC-CCChHHHHHHHHHHHHHHhhC-h-hhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhcc
Confidence 77777776 589999999999999999854 4 3565 58999999999999999999999999998776543 33455
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcC-
Q 004960 158 ADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIES- 236 (721)
Q Consensus 158 ~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~- 236 (721)
+..+..+.+.+.+ .++-.+...++++..+... +. .....+++ .+...+++.++.++..|++++..+...
T Consensus 201 ~~~~~~Ll~~l~~-~~~~~q~~il~~l~~l~~~--~~---~~~~~~l~----~l~~~l~~~~~~V~~ea~~~i~~l~~~~ 270 (591)
T 2vgl_B 201 PQNINKLLTALNE-CTEWGQIFILDCLSNYNPK--DD---REAQSICE----RVTPRLSHANSAVVLSAVKVLMKFLELL 270 (591)
T ss_dssp HHHHHHHHHHHHH-CCHHHHHHHHHHHHTSCCC--SH---HHHHHHHH----HHTTCSCSSTTHHHHHHHHHHHHSCCSC
T ss_pred HHHHHHHHHcCCC-CCchHHHHHHHHHHHhCCC--Ch---HHHHHHHH----HHHHHHcCCChHHHHHHHHHHHHHhhcc
Confidence 6667777777777 7777888778877665532 11 11233444 444467788899999999999998753
Q ss_pred --cccchhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCc
Q 004960 237 --PAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLA 314 (721)
Q Consensus 237 --~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~ 314 (721)
.+..+......+...+..+. ++ +.++|+.++..+..++...|..+.. .+.. .++.. +|+.+
T Consensus 271 ~~~~~~~~~~~~~~~~~L~~L~-~~--d~~vr~~aL~~l~~i~~~~p~~~~~--~~~~-------~~~~~-----~d~~~ 333 (591)
T 2vgl_B 271 PKDSDYYNMLLKKLAPPLVTLL-SG--EPEVQYVALRNINLIVQKRPEILKQ--EIKV-------FFVKY-----NDPIY 333 (591)
T ss_dssp CBTTBSHHHHHHHTHHHHHHHT-TS--CHHHHHHHHHHHHHHHHHCCSTTTT--CTTT-------TSCCT-----TSCHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHh-cC--CccHHHHHHHHHHHHHHhChHHHHH--HHHh-------heecc-----CChHH
Confidence 34555555555555555444 33 6899999999999998765554322 1111 11111 12367
Q ss_pred HHHHHHHHHHHHHHHcCccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhH
Q 004960 315 PDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFV 394 (721)
Q Consensus 315 ~~~~a~~~l~~l~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~v 394 (721)
++..+.+.+..++ .+..+..+++.+.+++.+.++..|..++.+++.++...+. ....+++.+++.+.+....|
T Consensus 334 Ir~~al~~L~~l~---~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~----~~~~~v~~Ll~ll~~~~~~v 406 (591)
T 2vgl_B 334 VKLEKLDIMIRLA---SQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQ----SAERCVSTLLDLIQTKVNYV 406 (591)
T ss_dssp HHHHHHHHHHHTC---CSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHH----HHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHC---ChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChh----HHHHHHHHHHHHHcccchHH
Confidence 7777766665544 3344677888888889999999999999999999987653 34567788888888999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccC-CChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCC
Q 004960 395 RGAASFALGQFAEYLQPEIVSHYESVLPCILNALED-ESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSP 473 (721)
Q Consensus 395 r~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~-~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~ 473 (721)
+..+..+++.+....+. ..+.+++.+.+.+.+ ..+.++..++|+++.+...... .+.++..+.+.+.+.+
T Consensus 407 ~~e~i~~l~~ii~~~p~----~~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~-----~~~~l~~l~~~~~~~~ 477 (591)
T 2vgl_B 407 VQEAIVVIRDIFRKYPN----KYESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDN-----ADELLESFLEGFHDES 477 (591)
T ss_dssp HHHHHHHHHHHHHHSCS----SCCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTT-----HHHHHHHHSTTCSSSC
T ss_pred HHHHHHHHHHHHHHCcc----hHHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccC-----HHHHHHHHHHhhccCC
Confidence 99998888888766542 234667778888874 4578999999999988655432 3566677766666778
Q ss_pred hhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHH
Q 004960 474 RNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVA 532 (721)
Q Consensus 474 ~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~ 532 (721)
..+|..++.++..+....++...+ .+..+.+.... ++.+.++|.+|.+.+..+.
T Consensus 478 ~~vr~~~l~a~~Kl~~~~p~~~~~----~i~~ll~~~~~-d~~d~evrdRA~~y~~ll~ 531 (591)
T 2vgl_B 478 TQVQLTLLTAIVKLFLKKPSETQE----LVQQVLSLATQ-DSDNPDLRDRGYIYWRLLS 531 (591)
T ss_dssp HHHHHHHHHHHHHHHTTCCSTTHH----HHHHHHHHHHT-TCCCHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHhcCchHHHH----HHHHHHHHhhh-cCCChHHHHHHHHHHHHHC
Confidence 899999999999888765543212 22222222211 2345678888888777663
No 29
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.86 E-value=3.3e-19 Score=191.12 Aligned_cols=364 Identities=15% Similarity=0.150 Sum_probs=264.2
Q ss_pred CCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhh-hccccc-HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcC
Q 004960 115 EWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIG-QTFRPH-FADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTN 192 (721)
Q Consensus 115 ~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~-~~~~~~-~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~ 192 (721)
.+...++.+.+.++++++..+..|+.+++.++.... ...... -..+++.+.+++.++.++.+|..|+++|.++....+
T Consensus 84 ~~~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~ 163 (530)
T 1wa5_B 84 QLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTS 163 (530)
T ss_dssp ---CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCH
T ss_pred hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCH
Confidence 366779999999999999999999999999875421 111111 135688999999883389999999999999987542
Q ss_pred ChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcccchhhhH-HHHHHHHHHhhcCCCCChHHHHHHHH
Q 004960 193 DGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSV-KSIVHFSLEVSSSHNLEPNTRHQAIQ 271 (721)
Q Consensus 193 ~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~r~~a~~ 271 (721)
+..........+|.++. .+.+++++++..|+++|..++...+..-...+ ..+++.++..+.+. +..++..+++
T Consensus 164 ~~~~~~~~~g~i~~Lv~----lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~v~~~a~~ 237 (530)
T 1wa5_B 164 AQTKVVVDADAVPLFIQ----LLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN--KPSLIRTATW 237 (530)
T ss_dssp HHHHHHHHTTCHHHHHH----HHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSC--CHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHH----HHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccC--CHHHHHHHHH
Confidence 21111112456777777 45568999999999999999986543222211 23556666666654 7889999999
Q ss_pred HHHHHHHHh-HhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcCc---ccc-HhHHHHHHhhh
Q 004960 272 IISWLAKYK-YNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAK---HVF-PPVFEFASVSC 346 (721)
Q Consensus 272 ~l~~l~~~~-~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~---~~~-~~i~~~l~~~l 346 (721)
++..++... +... ......+++.++.++...+ ...+..+..++..++...++ .++ ..+++.+...+
T Consensus 238 ~L~~L~~~~~~~~~--~~~~~~~l~~L~~lL~~~d-------~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL 308 (530)
T 1wa5_B 238 TLSNLCRGKKPQPD--WSVVSQALPTLAKLIYSMD-------TETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELL 308 (530)
T ss_dssp HHHHHHCCSSSCCC--HHHHGGGHHHHHHHTTCCC-------HHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGG
T ss_pred HHHHHhCCCCCCCc--HHHHHhHHHHHHHHHcCCC-------HHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHH
Confidence 999999643 2110 0123456666777775432 56788888888888754321 112 24677788888
Q ss_pred cCCChhhHhHHHHHHHHHhhccHHHHHHhH-HHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhh-hhHHHHH
Q 004960 347 QNASPKYREAAVTAIGIISEGCAEWMKEKL-ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY-ESVLPCI 424 (721)
Q Consensus 347 ~~~~~~~r~~al~~l~~i~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~l~~l 424 (721)
.+++|..|..++.+++.++.+.+......+ ..+++.+...+.++++.+|..|+++|++++...+......+ .++++.|
T Consensus 309 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L 388 (530)
T 1wa5_B 309 SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPL 388 (530)
T ss_dssp GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHH
T ss_pred CCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHH
Confidence 899999999999999999987665433333 36889999999999999999999999999986554444444 5789999
Q ss_pred HHhccCCChHHHHHHHHHHHHHHHhhhh--ccccchH--HHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhh
Q 004960 425 LNALEDESDEVKEKSYYALAAFCEDMGE--EILPFLD--PLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQ 493 (721)
Q Consensus 425 ~~~l~~~~~~v~~~a~~al~~l~~~~~~--~~~~~~~--~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~ 493 (721)
++.+.++++.++..|+++|.+++...+. ....++. .+++.|..++.+.++.++..++.++..+....+.
T Consensus 389 ~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~ 461 (530)
T 1wa5_B 389 VKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEA 461 (530)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhh
Confidence 9999988899999999999999987543 2222222 5888899999999999999999999999876543
No 30
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.85 E-value=5.4e-19 Score=189.45 Aligned_cols=392 Identities=15% Similarity=0.119 Sum_probs=283.1
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHccccCCCCC-----cchHHHHHHhccCC-cHHHHHHHHHHHHHhhhhhhhcc
Q 004960 80 KQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEW-----PDLLPFLFQFSQSE-QEEHREVALILFSSLTETIGQTF 153 (721)
Q Consensus 80 ~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~-----~~ll~~l~~~l~~~-~~~~~~~al~~l~~i~~~~~~~~ 153 (721)
...+++.|.+ .++.+|..++.++..++...... .+ ..++|.+.+++.++ ++..+..|+.+++.++...++..
T Consensus 89 i~~lv~~L~s-~~~~~~~~A~~~L~~ll~~~~~~-~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~ 166 (530)
T 1wa5_B 89 LPQMTQQLNS-DDMQEQLSATVKFRQILSREHRP-PIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT 166 (530)
T ss_dssp HHHHHHHHSC-SSHHHHHHHHHHHHHHTCCSSSC-SHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHcC-CCHHHHHHHHHHHHHHhCCCCCc-cHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 3456677775 68999999999999997653211 11 35799999999987 89999999999999987543221
Q ss_pred ccc-HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 004960 154 RPH-FADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDE 232 (721)
Q Consensus 154 ~~~-~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~ 232 (721)
... -...++.+..++.+ +++.+|..|+++|+++....+...........+|.++. .+.+.+++++..++++|..
T Consensus 167 ~~~~~~g~i~~Lv~lL~~-~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~----ll~~~~~~v~~~a~~~L~~ 241 (530)
T 1wa5_B 167 KVVVDADAVPLFIQLLYT-GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILG----LFNSNKPSLIRTATWTLSN 241 (530)
T ss_dssp HHHHHTTCHHHHHHHHHH-CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHH----GGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHH----HhccCCHHHHHHHHHHHHH
Confidence 111 13567888888888 89999999999999998753221111112356677666 5666889999999999999
Q ss_pred HhcCc-ccchhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCCh-HHHHHHHHhhhccCCCCCCC
Q 004960 233 LIESP-APLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLV-IPILQVMCPLLAESNEAGED 310 (721)
Q Consensus 233 l~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~-~~il~~l~~~l~~~~~~~~~ 310 (721)
+.... +..-......+++.++..+.+. ++.++..+++++..++...+..... ++ ..+++.++.++.+.+
T Consensus 242 L~~~~~~~~~~~~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~~L~~~~~~~~~~--~~~~~~v~~Lv~lL~~~~----- 312 (530)
T 1wa5_B 242 LCRGKKPQPDWSVVSQALPTLAKLIYSM--DTETLVDACWAISYLSDGPQEAIQA--VIDVRIPKRLVELLSHES----- 312 (530)
T ss_dssp HHCCSSSCCCHHHHGGGHHHHHHHTTCC--CHHHHHHHHHHHHHHHSSCHHHHHH--HHHTTCHHHHHHGGGCSC-----
T ss_pred HhCCCCCCCcHHHHHhHHHHHHHHHcCC--CHHHHHHHHHHHHHHhCCCHHHHHH--HHhcCcHHHHHHHHCCCC-----
Confidence 99765 3322333445666666666655 6889999999999998654332211 11 134566667776432
Q ss_pred CCCcHHHHHHHHHHHHHHHcCc---ccc-HhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhH-HHHHHHHHh
Q 004960 311 DDLAPDRAAAEVIDTMALNLAK---HVF-PPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKL-ESVLHIVLG 385 (721)
Q Consensus 311 ~~~~~~~~a~~~l~~l~~~~~~---~~~-~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l-~~i~~~l~~ 385 (721)
+..+..+..++..++...+. .++ ..+++.+...+.++++..|..|+++++.++.+.+......+ ..+++.++.
T Consensus 313 --~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ 390 (530)
T 1wa5_B 313 --TLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVK 390 (530)
T ss_dssp --HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHH
T ss_pred --hhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHH
Confidence 66788888888887753321 111 35677888889999999999999999999987765554443 357888888
Q ss_pred hcCCCCHhHHHHHHHHHHHHHhhhhH--HHHHhh--hhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhh-------cc
Q 004960 386 ALRDPEQFVRGAASFALGQFAEYLQP--EIVSHY--ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGE-------EI 454 (721)
Q Consensus 386 ~l~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~--~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~-------~~ 454 (721)
.+.++++.+|..|+++|++++....+ ....++ .++++.|+..+.+.++.++..++++|.+++...+. ..
T Consensus 391 lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~ 470 (530)
T 1wa5_B 391 LLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNI 470 (530)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred HHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccc
Confidence 88889999999999999999987543 333333 46899999999999999999999999999987643 22
Q ss_pred ccchHH-----HHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q 004960 455 LPFLDP-----LMGKLLAALENSPRNLQETCMSAIGSVAA 489 (721)
Q Consensus 455 ~~~~~~-----i~~~l~~~l~~~~~~v~~~~l~~l~~l~~ 489 (721)
.+|... .++.|..+..+.+..+++.+..++..+..
T Consensus 471 ~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~ 510 (530)
T 1wa5_B 471 NENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFG 510 (530)
T ss_dssp CHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSS
T ss_pred cHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 344443 36678888888888888888877765543
No 31
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.84 E-value=3.5e-18 Score=183.29 Aligned_cols=396 Identities=14% Similarity=0.148 Sum_probs=280.9
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcC-ChhhHHHHHhhHHHHHHHHHHHhhcCC-HHHHHHHHHHHHHHhcCc
Q 004960 160 MQALLLKCLQDETSNRVRIAALKAIGSFLEFTN-DGAEVVKFREFIPSILNVSRQCLASGE-EDVAVIAFEIFDELIESP 237 (721)
Q Consensus 160 l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~~~~~~l~~ll~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~ 237 (721)
-++.+.+.+.+ +++.+|..|++++.+++.... .+.....-...+|.++. .+.+++ +.++..|+++|..++...
T Consensus 75 ~l~~lv~~L~s-~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~----lL~~~~~~~v~~~A~~~L~~l~~~~ 149 (528)
T 4b8j_A 75 SLPAMIGGVYS-DDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQ----FLTREDFPQLQFEAAWALTNIASGT 149 (528)
T ss_dssp CHHHHHHHHTS-SCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHH----HHTCTTCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHH----HhCCCCCHHHHHHHHHHHHHHhCCC
Confidence 35666777888 789999999999999977653 22222222467787777 556555 899999999999999875
Q ss_pred ccchhhhHH-HHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhh---hhhcCChHHHHHHHHhhhccCCCCCCCCCC
Q 004960 238 APLLGDSVK-SIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNS---LKKHKLVIPILQVMCPLLAESNEAGEDDDL 313 (721)
Q Consensus 238 ~~~~~~~~~-~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~~~~~~il~~l~~~l~~~~~~~~~~~~ 313 (721)
+......+. ..++.++..+.++ ++.+|..|+++|..++...+.. +... ..++.++.++... .+.
T Consensus 150 ~~~~~~~~~~g~i~~L~~lL~~~--~~~v~~~a~~aL~~l~~~~~~~~~~i~~~----g~l~~Ll~lL~~~------~~~ 217 (528)
T 4b8j_A 150 SENTKVVIDHGAVPIFVKLLGSS--SDDVREQAVWALGNVAGDSPKCRDLVLAN----GALLPLLAQLNEH------TKL 217 (528)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHTCHHHHHHHHHT----TCHHHHHHTCCTT------CCH
T ss_pred HHHHHHHHhCCcHHHHHHHhcCC--CHHHHHHHHHHHHHHhCCChhhHHHHHHC----CcHHHHHHHHhcC------CCH
Confidence 543333322 3566667777665 7899999999999998654331 1111 2344555666322 135
Q ss_pred cHHHHHHHHHHHHHHHcCc---cccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhH-HHHHHHHHhhcCC
Q 004960 314 APDRAAAEVIDTMALNLAK---HVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKL-ESVLHIVLGALRD 389 (721)
Q Consensus 314 ~~~~~a~~~l~~l~~~~~~---~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l-~~i~~~l~~~l~d 389 (721)
..+..+..++..++...+. .....+++.+...+.+.++..+..++.+++.++.+........+ ..+++.++..+.+
T Consensus 218 ~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~ 297 (528)
T 4b8j_A 218 SMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH 297 (528)
T ss_dssp HHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcC
Confidence 7788888999999876442 23456788888889999999999999999999987665443332 2578899999999
Q ss_pred CCHhHHHHHHHHHHHHHhhhhHHHHHhh-hhHHHHHHHhccCC-ChHHHHHHHHHHHHHHHhhhhccccch-HHHHHHHH
Q 004960 390 PEQFVRGAASFALGQFAEYLQPEIVSHY-ESVLPCILNALEDE-SDEVKEKSYYALAAFCEDMGEEILPFL-DPLMGKLL 466 (721)
Q Consensus 390 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~l~~l~~~l~~~-~~~v~~~a~~al~~l~~~~~~~~~~~~-~~i~~~l~ 466 (721)
+++.|+..|+++|++++...+......+ .++++.|+..+.++ ++.++..|+++|++++...+......+ ..+++.|.
T Consensus 298 ~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~ 377 (528)
T 4b8j_A 298 PSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLV 377 (528)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHH
T ss_pred CChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHH
Confidence 9999999999999999986544333333 57899999999988 899999999999999865433333222 26778888
Q ss_pred HhhcCCChhHHHHHHHHHHHHHHHhhhcchhhH--HHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchh------
Q 004960 467 AALENSPRNLQETCMSAIGSVAAAAEQAFIPYA--ERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRA------ 538 (721)
Q Consensus 467 ~~l~~~~~~v~~~~l~~l~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~------ 538 (721)
.++.+.+..++..++.+++.++.........++ ..+++.|..++.. ++..++..++.+++.+.......
T Consensus 378 ~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~---~d~~v~~~al~~L~~l~~~~~~~~~~~~~ 454 (528)
T 4b8j_A 378 NLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLIC---PDIRIVTVCLEGLENILKVGETDKTLAAG 454 (528)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGC---SCHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcC---CCHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 888888999999999999999887433444443 2367777777754 34467778888888887543210
Q ss_pred hccCChHH-----HHHHHHhccCCCChhhHHHHHHHHHHHHH
Q 004960 539 RMEPILPP-----FVEAAISGFGLEFSELREYTHGFFSNIAG 575 (721)
Q Consensus 539 ~~~~~~~~-----i~~~l~~~l~~~~~~~~~~~~~~l~~l~~ 575 (721)
...++... .++.+....++++++++..+..++..+..
T Consensus 455 ~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~ 496 (528)
T 4b8j_A 455 DVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWM 496 (528)
T ss_dssp SCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred cccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 11112221 24455555667788899888887777643
No 32
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.84 E-value=9.9e-19 Score=187.54 Aligned_cols=362 Identities=14% Similarity=0.136 Sum_probs=262.7
Q ss_pred chHHHHHHhccCCcHHHHHHHHHHHHHhhhhhh-hcccc-cHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChh
Q 004960 118 DLLPFLFQFSQSEQEEHREVALILFSSLTETIG-QTFRP-HFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGA 195 (721)
Q Consensus 118 ~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~-~~~~~-~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~ 195 (721)
.-+|.+.+.+.++++..+..|+.+++.++.... +.... .-..+++.+.+++.++.++.+|..|+++|.++....++..
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 348889999999999999999999999875443 11111 1235688889999883349999999999999987532221
Q ss_pred hHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcccchhhhHH-HHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 004960 196 EVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVK-SIVHFSLEVSSSHNLEPNTRHQAIQIIS 274 (721)
Q Consensus 196 ~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~r~~a~~~l~ 274 (721)
....-...+|.++. .+.+++++++..|+++|+.++...+..-...+. ..++.++..+... .+..++..+++++.
T Consensus 154 ~~~~~~g~i~~L~~----lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~-~~~~v~~~a~~~L~ 228 (528)
T 4b8j_A 154 KVVIDHGAVPIFVK----LLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEH-TKLSMLRNATWTLS 228 (528)
T ss_dssp HHHHHTTHHHHHHH----HTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTT-CCHHHHHHHHHHHH
T ss_pred HHHHhCCcHHHHHH----HhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcC-CCHHHHHHHHHHHH
Confidence 11111346666666 677789999999999999998765443222221 2455666666333 27889999999999
Q ss_pred HHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcCcc---cc-HhHHHHHHhhhcCCC
Q 004960 275 WLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKH---VF-PPVFEFASVSCQNAS 350 (721)
Q Consensus 275 ~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~---~~-~~i~~~l~~~l~~~~ 350 (721)
.++...+.... .....+++.+..++...+ ...+..+..++..++...... ++ ..+++.+...+.+++
T Consensus 229 ~L~~~~~~~~~--~~~~~~l~~L~~lL~~~~-------~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~ 299 (528)
T 4b8j_A 229 NFCRGKPQPSF--EQTRPALPALARLIHSND-------EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPS 299 (528)
T ss_dssp HHHCSSSCCCH--HHHTTHHHHHHHHTTCCC-------HHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSC
T ss_pred HHHcCCCCCcH--HHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCC
Confidence 99865422110 123456777777775433 567788888888877433221 11 246778888889999
Q ss_pred hhhHhHHHHHHHHHhhccHHHHHHhH-HHHHHHHHhhcCCC-CHhHHHHHHHHHHHHHhhhhHHHHHhh-hhHHHHHHHh
Q 004960 351 PKYREAAVTAIGIISEGCAEWMKEKL-ESVLHIVLGALRDP-EQFVRGAASFALGQFAEYLQPEIVSHY-ESVLPCILNA 427 (721)
Q Consensus 351 ~~~r~~al~~l~~i~~~~~~~~~~~l-~~i~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~l~~l~~~ 427 (721)
+..+..|+.+++.++.+.+......+ ..+++.+...+.++ ++.+|..|+|+|++++...+......+ .+++|.|++.
T Consensus 300 ~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~l 379 (528)
T 4b8j_A 300 PSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNL 379 (528)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999987665443333 45788889999888 999999999999999976544333333 4889999999
Q ss_pred ccCCChHHHHHHHHHHHHHHHhhhhccccch--HHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhh
Q 004960 428 LEDESDEVKEKSYYALAAFCEDMGEEILPFL--DPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQ 493 (721)
Q Consensus 428 l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~ 493 (721)
+.+.+..++..|+++|.+++.........++ ..+++.|..++.+.+..++..++.++..+....+.
T Consensus 380 L~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~ 447 (528)
T 4b8j_A 380 LQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGET 447 (528)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9988899999999999999987433333333 36788999999999999999999999999876544
No 33
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.83 E-value=2.1e-17 Score=178.36 Aligned_cols=507 Identities=12% Similarity=0.113 Sum_probs=334.2
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHh--cC--CCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhcCCCHHHHHH
Q 004960 3 QSLELLLIQFLMPDNDARRQAEDQIKRLA--KD--PQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQL 78 (721)
Q Consensus 3 ~~l~~ll~~~~s~d~~~r~~A~~~L~~~~--~~--p~~~~~l~~il~~~~~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~ 78 (721)
.++.++-+.+.++|...|+.|-..+--+. .. +.+...+++.+ ++++..+|+.+..++.+.... .++....
T Consensus 13 ~e~~~i~~~L~~~~~~~k~~~~~kli~~~~~G~d~~~~~~~vi~l~-~s~~~~~Krl~yl~l~~~~~~-----~~e~~~l 86 (591)
T 2vgl_B 13 GEIFELKAELNNEKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVNCM-QTDNLELKKLVYLYLMNYAKS-----QPDMAIM 86 (591)
T ss_dssp SHHHHHHHHTTSSCHHHHHHHHHHHHHHHHTTCCCGGGHHHHHHTT-SSSCHHHHHHHHHHHHHHHHH-----SHHHHHT
T ss_pred ChHHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHccc-----CchHHHH
Confidence 35677777788899888888877774332 22 23455566644 457899999999998887653 3444444
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccccHH
Q 004960 79 VKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFA 158 (721)
Q Consensus 79 i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~ 158 (721)
+.+.+.+.+. ++++.+|..+..+++.+.. + ..++.++|.+.+++.++++.+|..|..++..++...++.+.. .
T Consensus 87 ~~n~l~kdL~-~~n~~ir~~AL~~L~~i~~---~-~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~--~ 159 (591)
T 2vgl_B 87 AVNSFVKDCE-DPNPLIRALAVRTMGCIRV---D-KITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVED--Q 159 (591)
T ss_dssp THHHHGGGSS-SSSHHHHHHHHHHHHTCCS---G-GGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHH--H
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHcCCh---H-HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhccc--c
Confidence 4555555555 4899999888777776653 2 367888999999999999999999999999999865543211 4
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcc
Q 004960 159 DMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPA 238 (721)
Q Consensus 159 ~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~ 238 (721)
.+++.+..++.| +++.|+..|+.+++.+....++..........++.++. .+.+.++-.+...++.+..+....+
T Consensus 160 ~~~~~l~~lL~d-~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~----~l~~~~~~~q~~il~~l~~l~~~~~ 234 (591)
T 2vgl_B 160 GFLDSLRDLIAD-SNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLT----ALNECTEWGQIFILDCLSNYNPKDD 234 (591)
T ss_dssp HHHHHHHHTTSC-SCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHH----HHHHCCHHHHHHHHHHHHTSCCCSH
T ss_pred cHHHHHHHHhCC-CChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHH----cCCCCCchHHHHHHHHHHHhCCCCh
Confidence 688999999998 99999999999999988764322000001223334444 4445677677777777665553322
Q ss_pred cchhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChH----HHHHHHHhhhccCCCCCCCCCCc
Q 004960 239 PLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVI----PILQVMCPLLAESNEAGEDDDLA 314 (721)
Q Consensus 239 ~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~----~il~~l~~~l~~~~~~~~~~~~~ 314 (721)
.....+++.+...+++. +..++..|+.++..+....+ ...+.+. .+.+.++.++ .. +.+
T Consensus 235 ----~~~~~~l~~l~~~l~~~--~~~V~~ea~~~i~~l~~~~~---~~~~~~~~~~~~~~~~L~~L~-~~-------d~~ 297 (591)
T 2vgl_B 235 ----REAQSICERVTPRLSHA--NSAVVLSAVKVLMKFLELLP---KDSDYYNMLLKKLAPPLVTLL-SG-------EPE 297 (591)
T ss_dssp ----HHHHHHHHHHTTCSCSS--TTHHHHHHHHHHHHSCCSCC---BTTBSHHHHHHHTHHHHHHHT-TS-------CHH
T ss_pred ----HHHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHhhccC---CCHHHHHHHHHHHHHHHHHHh-cC-------Ccc
Confidence 23455666666666655 67899999988877653210 0011222 2233333333 22 257
Q ss_pred HHHHHHHHHHHHHHHcCccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhH
Q 004960 315 PDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFV 394 (721)
Q Consensus 315 ~~~~a~~~l~~l~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~v 394 (721)
.+..+...+..+....++.+.+. +..+. ...++++..|..++..+..++... .++.+++.+...+.+.++.+
T Consensus 298 vr~~aL~~l~~i~~~~p~~~~~~-~~~~~-~~~~d~~~Ir~~al~~L~~l~~~~------nv~~iv~~L~~~l~~~d~~~ 369 (591)
T 2vgl_B 298 VQYVALRNINLIVQKRPEILKQE-IKVFF-VKYNDPIYVKLEKLDIMIRLASQA------NIAQVLAELKEYATEVDVDF 369 (591)
T ss_dssp HHHHHHHHHHHHHHHCCSTTTTC-TTTTS-CCTTSCHHHHHHHHHHHHHTCCSS------THHHHHHHHHHHTTSSCHHH
T ss_pred HHHHHHHHHHHHHHhChHHHHHH-HHhhe-eccCChHHHHHHHHHHHHHHCChh------hHHHHHHHHHHHHhcCCHHH
Confidence 88999999999988766432221 11111 122445899999999999887542 34577888888999999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcC-CC
Q 004960 395 RGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALEN-SP 473 (721)
Q Consensus 395 r~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~-~~ 473 (721)
|..++++++.++..+++ ....+++.+++.+.+....++..+..++..++...+... +.++..|...+.+ ..
T Consensus 370 r~~~v~aI~~la~~~~~----~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~----~~~v~~L~~~l~~~~~ 441 (591)
T 2vgl_B 370 VRKAVRAIGRCAIKVEQ----SAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKY----ESIIATLCENLDSLDE 441 (591)
T ss_dssp HHHHHHHHHHHHTTCHH----HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSC----CTTHHHHHHTTTTCCS
T ss_pred HHHHHHHHHHHHHhChh----HHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcchH----HHHHHHHHHHHHhccC
Confidence 99999999999998754 345677888888888888899999999999987765422 2345556666664 45
Q ss_pred hhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHh
Q 004960 474 RNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAIS 553 (721)
Q Consensus 474 ~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~ 553 (721)
+.++..+++++|..+....+ .+.++. .+++.-.++...+|..++.++..+....+ +.....++.++.
T Consensus 442 ~~~~~~~~wilGey~~~~~~-----~~~~l~---~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p-----~~~~~~i~~ll~ 508 (591)
T 2vgl_B 442 PDARAAMIWIVGEYAERIDN-----ADELLE---SFLEGFHDESTQVQLTLLTAIVKLFLKKP-----SETQELVQQVLS 508 (591)
T ss_dssp HHHHHHHHHHHHTTCTTCTT-----HHHHHH---HHSTTCSSSCHHHHHHHHHHHHHHHTTCC-----STTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccccccC-----HHHHHH---HHHHhhccCCHHHHHHHHHHHHHHHhcCc-----hHHHHHHHHHHH
Confidence 77888888887765443321 223333 23332223344677777777777764332 222344444444
Q ss_pred cc-CC-CChhhHHHHHHHHHHH
Q 004960 554 GF-GL-EFSELREYTHGFFSNI 573 (721)
Q Consensus 554 ~l-~~-~~~~~~~~~~~~l~~l 573 (721)
.. .+ ++.++|+.+..+++-+
T Consensus 509 ~~~~d~~d~evrdRA~~y~~ll 530 (591)
T 2vgl_B 509 LATQDSDNPDLRDRGYIYWRLL 530 (591)
T ss_dssp HHHTTCCCHHHHHHHHHHHTTT
T ss_pred HhhhcCCChHHHHHHHHHHHHH
Confidence 43 34 6889999998776654
No 34
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.82 E-value=2.4e-15 Score=169.59 Aligned_cols=544 Identities=12% Similarity=0.111 Sum_probs=339.8
Q ss_pred CCcHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhh------------
Q 004960 129 SEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAE------------ 196 (721)
Q Consensus 129 ~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~------------ 196 (721)
+.++..+..++.|++.++...+...... +.+++.+.+++.+ +.+|.+|+.||..++....++.+
T Consensus 204 ~~~~~l~~~~L~~l~s~i~wi~~~~i~~-~~ll~~l~~~L~~---~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~ 279 (980)
T 3ibv_A 204 AKNYGTVGLCLQVYAQWVSWININLIVN-EPCMNLLYSFLQI---EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNL 279 (980)
T ss_dssp TTCHHHHHHHHHHHHHHTTTSCHHHHHC-HHHHHHHHHHTTS---HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhhcCHHhhhc-chHHHHHHHHcCC---hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHH
Confidence 3566677778888887776543221111 5667777777744 57777777777665433211100
Q ss_pred --------------HH-----------------------------HHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 004960 197 --------------VV-----------------------------KFREFIPSILNVSRQCLASGEEDVAVIAFEIFDEL 233 (721)
Q Consensus 197 --------------~~-----------------------------~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l 233 (721)
.. .....+..+++.+..++..++.++...++.+|..+
T Consensus 280 ~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~ 359 (980)
T 3ibv_A 280 FFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDL 359 (980)
T ss_dssp HHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHH
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHH
Confidence 00 00122334455555567777888888888888887
Q ss_pred hcC---------cccchhhhHHHHHHHHHHhhcCCC----C-----Ch-----HHHHHHHHHHHHHHHHhHhhhhhcCCh
Q 004960 234 IES---------PAPLLGDSVKSIVHFSLEVSSSHN----L-----EP-----NTRHQAIQIISWLAKYKYNSLKKHKLV 290 (721)
Q Consensus 234 ~~~---------~~~~~~~~~~~l~~~~~~~~~~~~----~-----~~-----~~r~~a~~~l~~l~~~~~~~~~~~~~~ 290 (721)
... ....+.++++.+++.++..+..++ . ++ +.|...-.++..+....+..+ +
T Consensus 360 l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~-----l 434 (980)
T 3ibv_A 360 LVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLF-----S 434 (980)
T ss_dssp HHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHH-----H
T ss_pred HHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHH-----H
Confidence 643 134456777888887776554321 1 11 234433322223332222221 2
Q ss_pred HHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcCc---------cccHhHHHHHHhhhc-----CCChhhHhH
Q 004960 291 IPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAK---------HVFPPVFEFASVSCQ-----NASPKYREA 356 (721)
Q Consensus 291 ~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~---------~~~~~i~~~l~~~l~-----~~~~~~r~~ 356 (721)
..+...+.+++...-......+|...+++.-++..+++.+.. ..++.+++.+...++ .+.+..|..
T Consensus 435 ~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~ 514 (980)
T 3ibv_A 435 SYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLL 514 (980)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 222223333332211000112488999999999999887652 345677777776654 567889999
Q ss_pred HHHHHHHHhhccHHHHHHhHHHHHHHHHh--hcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCC---
Q 004960 357 AVTAIGIISEGCAEWMKEKLESVLHIVLG--ALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDE--- 431 (721)
Q Consensus 357 al~~l~~i~~~~~~~~~~~l~~i~~~l~~--~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~--- 431 (721)
++.+++..++..... ..+++.+++.++. ++.+++++||.+|+.++.++++.++..+.+|++.++..+...|.-.
T Consensus 515 ~~~~l~rys~~~~~~-~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~ 593 (980)
T 3ibv_A 515 YMEILVRYASFFDYE-SAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSP 593 (980)
T ss_dssp HHHHHHHTGGGGGTC-CTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCC
T ss_pred HHHHHHHHHHHHhcC-chhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCC
Confidence 999999998876432 2568899999999 9999999999999999999999998777778888888877666521
Q ss_pred -C-----------------hHHHHHHHHHHHHHHHhhh---hccccchHHHHHH----HHHhhcCCCh--h---HHHHHH
Q 004960 432 -S-----------------DEVKEKSYYALAAFCEDMG---EEILPFLDPLMGK----LLAALENSPR--N---LQETCM 481 (721)
Q Consensus 432 -~-----------------~~v~~~a~~al~~l~~~~~---~~~~~~~~~i~~~----l~~~l~~~~~--~---v~~~~l 481 (721)
+ ..-+.....+++.++...+ +....|+..+++. +...+..... . -....+
T Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i 673 (980)
T 3ibv_A 594 VTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSL 673 (980)
T ss_dssp CCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHH
T ss_pred CCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHH
Confidence 0 1135668888899887753 2233455555544 4444533211 1 112456
Q ss_pred HHHHHHHHHhhhc------chhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhcc
Q 004960 482 SAIGSVAAAAEQA------FIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGF 555 (721)
Q Consensus 482 ~~l~~l~~~~~~~------~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l 555 (721)
.+++.+++...+. +...+.++++.+...+..-. .+..+|.++..++..+...+|+ .+.|+++++++.++..+
T Consensus 674 ~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~-~~~~irea~~~~~~r~i~~lg~-~~~p~lp~~i~~ll~~~ 751 (980)
T 3ibv_A 674 MAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMG-FNEDIRGAVRFTSGRIINVVGP-DMLPKVPQLISILLNSI 751 (980)
T ss_dssp HHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSC-CSHHHHHHHHHHHHHHTTTTHH-HHTTTHHHHHHHHHHHC
T ss_pred HHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHccH-hHHHHHHHHHHHHHhcC
Confidence 6777777755322 33456667777766676432 2346888899999999988887 68999999999998655
Q ss_pred CCCChhhHHHHHHHHHHHHHHcccCcccchhhhHHHHHhhccCCCCCccCCCCCccccccCCCCCCCCchhhhhccccce
Q 004960 556 GLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNI 635 (721)
Q Consensus 556 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (721)
+ ..+ ....+.+++.++..+|.++.+++..+++.+++.+-.- +.+... + .|+
T Consensus 752 ~--~~e-~~~fL~l~~qli~~f~~~~~~~l~~ll~~l~~~if~~------l~~~~~-------~---td~---------- 802 (980)
T 3ibv_A 752 D--MNE-LVDVLSFISQLIHIYKDNMMEITNRMLPTLLMRIFSS------LSAAPQ-------G---TDD---------- 802 (980)
T ss_dssp C--TTT-HHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHH------TTC--------------CCH----------
T ss_pred C--HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hcCCCC-------C---cHH----------
Confidence 4 222 4457899999999999999999999888887643210 000000 0 000
Q ss_pred eeecchhhhHHHHHHHHHHHHHH-ccccc-----cchHHHHHHHHHhc-ccCCChhHHHHHHHHHHHHHHHHHHhcccCC
Q 004960 636 SVRTGVLDEKAAATQALGLFALH-TKSSY-----APFLEESLKILVRH-ASYFHEDVRYQAVFALKNILTAAHAIFQSHN 708 (721)
Q Consensus 636 ~~~~~~~~~k~~a~~~l~~~~~~-~~~~~-----~~~~~~~~~~l~~~-~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 708 (721)
++ ...+.|++-+.++..++.+ +++.+ .++++.++..+... .+..+..+++.|...+.++++.+++. ++
T Consensus 803 -~r-~~~~l~r~~~~fl~~i~~~~~~~v~~s~~n~~~l~~~l~~l~~~a~~~~d~~~~K~a~~~l~~~v~~~~~~---~~ 877 (980)
T 3ibv_A 803 -AV-KQNDLRKSYISFILQLLNKGFGSILFTEENQVYFDPLINSILHFANLVGEPATQKSSIALVSKMVSLWGGK---DG 877 (980)
T ss_dssp -HH-HHHHHHHHHHHHHHHHHHTTCTGGGGSHHHHTTHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHC---------
T ss_pred -HH-HHHHHHHHHHHHHHHHHhCCchhhhcCCcchHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHCCC---Cc
Confidence 11 2234788888888888874 35554 35788888888865 44478899999999999999988642 21
Q ss_pred cchhHHHHHhh
Q 004960 709 VSLCYHFFLLS 719 (721)
Q Consensus 709 ~~~~~~~~~~~ 719 (721)
.+.|..|+.+
T Consensus 878 -~~gf~~f~~~ 887 (980)
T 3ibv_A 878 -IAGFENFTLS 887 (980)
T ss_dssp --CCHHHHHHH
T ss_pred -chHHHHHHHH
Confidence 5678888754
No 35
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.81 E-value=3.8e-17 Score=181.53 Aligned_cols=509 Identities=10% Similarity=0.048 Sum_probs=317.3
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHccccCC---
Q 004960 37 VPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPA--- 113 (721)
Q Consensus 37 ~~~l~~il~~~~~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~--- 113 (721)
+..+++.|.+ .+..+|..++..++.. .. ..........|+..|. +.++.+|..++.++..++......
T Consensus 117 i~~lv~~L~~-~~~~~r~~a~~~l~~~-~~------~~i~~g~ip~Lv~lL~-~~d~~vr~~A~~~L~~L~~~~~~~~~i 187 (780)
T 2z6g_A 117 HPTNVQRLAE-PSQMLKHAVVNLINYQ-DD------AELATRAIPELTKLLN-DEDQVVVNKAAVMVHQLSKKEASRHAI 187 (780)
T ss_dssp ---------C-CSCHHHHHHHHHHHHH-HH------HHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred HHHHHHHhcC-ccHHHHHHHHHHHHhh-hH------HHHHhCCHHHHHHHHC-CCCHHHHHHHHHHHHHHhCCChhHHHH
Confidence 3556666654 3567788777776633 11 1222445556677666 479999999999999998643110
Q ss_pred CCCcchHHHHHHhccCC-cHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcC
Q 004960 114 GEWPDLLPFLFQFSQSE-QEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTN 192 (721)
Q Consensus 114 ~~~~~ll~~l~~~l~~~-~~~~~~~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~ 192 (721)
..-++.++.|.+.+.++ ++..+..|+.+|..+.......-.-.-...++.+..++++ +++.+|..|+.+|.+++....
T Consensus 188 ~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~-~~~~v~~~A~~aL~nLa~~~~ 266 (780)
T 2z6g_A 188 MRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGS-PVDSVLFHAITTLHNLLLHQE 266 (780)
T ss_dssp TTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHHHST
T ss_pred HhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhCCCh
Confidence 12357899999999754 8899999999999977543211001113578899999998 889999999999999988754
Q ss_pred ChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcccchhhhH-HHHHHHHHHhhcCCCCChHHHHHHHH
Q 004960 193 DGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSV-KSIVHFSLEVSSSHNLEPNTRHQAIQ 271 (721)
Q Consensus 193 ~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~r~~a~~ 271 (721)
...........+|.++. .+.+++.+++..+..++..++...+..-.... ...++.++..+.+.+ .+..+..+..
T Consensus 267 ~~~~~v~~~g~v~~Lv~----lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~-~~~~~~~a~~ 341 (780)
T 2z6g_A 267 GAKMAVRLAGGLQKMVA----LLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSR 341 (780)
T ss_dssp THHHHHHHTTHHHHHHH----GGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCC-CHHHHHHHHH
T ss_pred hhHHHHHHcCCHHHHHH----HHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHH
Confidence 43222212356666666 67777888888888888877753321111111 123344444454442 4556667777
Q ss_pred HHHHHHHHhHh--hhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcCc-cccHhHHHHHHhhhcC
Q 004960 272 IISWLAKYKYN--SLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAK-HVFPPVFEFASVSCQN 348 (721)
Q Consensus 272 ~l~~l~~~~~~--~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~i~~~l~~~l~~ 348 (721)
++..++..... .+. -...++.++.++...+ ...+..+..++..++...+. .....+++.+.+.+.+
T Consensus 342 aL~~Ls~~~~~~~~i~----~~g~l~~Ll~lL~~~~-------~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~ 410 (780)
T 2z6g_A 342 VLKVLSVCSSNKPAIV----EAGGMQALGLHLTDPS-------QRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGS 410 (780)
T ss_dssp HHHHHHTSTTHHHHHH----HTTHHHHHGGGTTCSC-------HHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTC
T ss_pred HHHHhhcChHHHHHHH----HhchHHHHHHHHcCCc-------hHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcC
Confidence 77777742211 111 1135566777765432 34666777888888765542 2456788999999999
Q ss_pred CChhhHhHHHHHHHHHhhccHHHHHHhH-HHHHHHHHhhcCC-C-CHhHHHHHHHHHHHHHhhhhHH--HHH--hhhhHH
Q 004960 349 ASPKYREAAVTAIGIISEGCAEWMKEKL-ESVLHIVLGALRD-P-EQFVRGAASFALGQFAEYLQPE--IVS--HYESVL 421 (721)
Q Consensus 349 ~~~~~r~~al~~l~~i~~~~~~~~~~~l-~~i~~~l~~~l~d-~-~~~vr~~a~~~l~~l~~~~~~~--~~~--~~~~~l 421 (721)
.++..|..++.+++.++.+......... ...++.++..+.+ . ...||..|+++|++++...+.. .+. .-...+
T Consensus 411 ~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l 490 (780)
T 2z6g_A 411 DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGL 490 (780)
T ss_dssp SCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCH
Confidence 9999999999999999987543322221 2456777777764 2 3489999999999998644321 111 124678
Q ss_pred HHHHHhccCCCh-HHHHHHHHHHHHHHHhhhhccccch-HHHHHHHHHhhcCCC----------------------hhHH
Q 004960 422 PCILNALEDESD-EVKEKSYYALAAFCEDMGEEILPFL-DPLMGKLLAALENSP----------------------RNLQ 477 (721)
Q Consensus 422 ~~l~~~l~~~~~-~v~~~a~~al~~l~~~~~~~~~~~~-~~i~~~l~~~l~~~~----------------------~~v~ 477 (721)
+.|++.|.+++. .++..++++|++++...... .... ..+++.|..++.+.+ ..++
T Consensus 491 ~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~ 569 (780)
T 2z6g_A 491 PVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIV 569 (780)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHH-HHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHH
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHH-HHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHH
Confidence 999999998764 89999999999998533221 1111 134455555444322 3466
Q ss_pred HHHHHHHHHHHHHhhhcchhhH--HHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhccCChH--HHHHHHHh
Q 004960 478 ETCMSAIGSVAAAAEQAFIPYA--ERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILP--PFVEAAIS 553 (721)
Q Consensus 478 ~~~l~~l~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~--~i~~~l~~ 553 (721)
+.++.+++.++.... ....+ ...+|.|..++.. ++..++..+..+++.++.. + .....+. ..++.+..
T Consensus 570 ~~a~~aL~~La~~~~--~~~~l~~~~~i~~Lv~lL~~---~~~~v~~~a~~aL~~L~~~--~-~~~~~i~~~g~i~~L~~ 641 (780)
T 2z6g_A 570 EACTGALHILARDIH--NRIVIRGLNTIPLFVQLLYS---PIENIQRVAAGVLCELAQD--K-EAAEAIEAEGATAPLTE 641 (780)
T ss_dssp HHHHHHHHHHTTSHH--HHHHHHHTCCHHHHHHGGGC---SCHHHHHHHHHHHHHHHTS--H-HHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcChh--hHHHHHHCCcHHHHHHHHcC---CCHHHHHHHHHHHHHHhcC--H-HHHHHHHHCCCHHHHHH
Confidence 777777777753111 00111 1245666666654 3345677777777777521 1 1111111 14556667
Q ss_pred ccCCCChhhHHHHHHHHHHHHHHcccC
Q 004960 554 GFGLEFSELREYTHGFFSNIAGVLEDG 580 (721)
Q Consensus 554 ~l~~~~~~~~~~~~~~l~~l~~~~~~~ 580 (721)
.++++++++|..+..++.+++..-+..
T Consensus 642 Ll~~~~~~Vr~~A~~aL~~l~~~~~~~ 668 (780)
T 2z6g_A 642 LLHSRNEGVATYAAAVLFRMSEDKPQD 668 (780)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHcCCCHHHHHHHHHHHHHHHcCChHh
Confidence 778889999999999999998755543
No 36
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.80 E-value=7.7e-16 Score=166.51 Aligned_cols=512 Identities=10% Similarity=0.062 Sum_probs=325.9
Q ss_pred HHhcCCChHHHHHHHHHHHHH--hcCC--CcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHHHH
Q 004960 10 IQFLMPDNDARRQAEDQIKRL--AKDP--QVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIE 85 (721)
Q Consensus 10 ~~~~s~d~~~r~~A~~~L~~~--~~~p--~~~~~l~~il~~~~~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i~~~ll~ 85 (721)
..+.++|...|+.+-..+--+ ...+ ......++.+. +++...|+.+-.++.+.... .++....+.+.+.+
T Consensus 41 ~~l~~~~~~~k~~~l~kli~~~~~G~d~~~~~~~vik~~~-s~~~~~Krl~Yl~~~~~~~~-----~~e~~~l~in~l~k 114 (618)
T 1w63_A 41 SSFREEDNTYRCRNVAKLLYMHMLGYPAHFGQLECLKLIA-SQKFTDKRIGYLGAMLLLDE-----RQDVHLLMTNCIKN 114 (618)
T ss_dssp HHHTTTCTTTHHHHHHHHHHHHHTTCCCGGGHHHHHHHHH-SSSHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHH
T ss_pred HHhhCCCHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHc-CCchHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHH
Confidence 344444545555554444221 1211 22334444444 45778888888877776543 45556667777888
Q ss_pred HHhhcCCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHH
Q 004960 86 SITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLL 165 (721)
Q Consensus 86 ~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~l~~~l~ 165 (721)
.|. ++++.+|-.+..+++.|...+ ..+.+++.+..++.+.++.+|..|+.+++.+....++.. +.+++.+.
T Consensus 115 DL~-~~n~~vr~lAL~~L~~i~~~~----~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v----~~~~~~l~ 185 (618)
T 1w63_A 115 DLN-HSTQFVQGLALCTLGCMGSSE----MCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM----EMFLPATK 185 (618)
T ss_dssp HHS-CSSSHHHHHHHHHHHHHCCHH----HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG----GGGGGGTT
T ss_pred hcC-CCCHhHHHHHHHHHHhcCCHH----HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH----HHHHHHHH
Confidence 887 489999999999999998533 346789999999999999999999999999998776543 35667778
Q ss_pred HhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhh-----------cCCHHHHHHHHHHHHHHh
Q 004960 166 KCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLA-----------SGEEDVAVIAFEIFDELI 234 (721)
Q Consensus 166 ~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~-----------~~~~~~~~~a~~~l~~l~ 234 (721)
.++.| .++.|+.+|+.++..+....+ .....+..++|.++..+..... ..++-.+..+++++..+.
T Consensus 186 ~lL~D-~d~~V~~~Al~~L~~i~~~~~--~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~ 262 (618)
T 1w63_A 186 NLLNE-KNHGVLHTSVVLLTEMCERSP--DMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILG 262 (618)
T ss_dssp TSTTC-CCHHHHHHHHHHHHHHCCSHH--HHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHT
T ss_pred HHhCC-CCHhHHHHHHHHHHHHHHhCh--HHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhC
Confidence 88888 999999999999999876432 1133467788888887766543 236667778888888888
Q ss_pred cCcccchhhhHHHHHHHHHHhhcC-CCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCC
Q 004960 235 ESPAPLLGDSVKSIVHFSLEVSSS-HNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDL 313 (721)
Q Consensus 235 ~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~ 313 (721)
...+..-... ..++..++..... .+.+..+...|+.++..+.. .+. ......+.+...+...+ .
T Consensus 263 ~~~~~~~~~~-~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~-~~~------l~~~a~~~L~~~L~~~d-------~ 327 (618)
T 1w63_A 263 RNDDDSSEAM-NDILAQVATNTETSKNVGNAILYETVLTIMDIKS-ESG------LRVLAINILGRFLLNND-------K 327 (618)
T ss_dssp TTCHHHHHTT-HHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC-CHH------HHHHHHHHHHHHHTCSS-------T
T ss_pred CCCHHHHHHH-HHHHHHHHhccccccchHHHHHHHHHHHHHhcCC-CHH------HHHHHHHHHHHHHhCCC-------C
Confidence 7654322222 1222222211111 11133556666665544321 011 11233444555554432 5
Q ss_pred cHHHHHHHHHHHHHHHcCccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHh
Q 004960 314 APDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQF 393 (721)
Q Consensus 314 ~~~~~a~~~l~~l~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~ 393 (721)
+.+..+...+..++...+. .+......+...+.+++...|..++.++..++... .++.+++.+...+.+.+..
T Consensus 328 ~vr~~aL~~L~~i~~~~p~-~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~------nv~~iv~eL~~~l~~~d~e 400 (618)
T 1w63_A 328 NIRYVALTSLLKTVQTDHN-AVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGN------NIRGMMKELLYFLDSCEPE 400 (618)
T ss_dssp TTHHHHHHHHHHHHHHHHH-HHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSS------STHHHHHHHHHHHHHCCHH
T ss_pred chHHHHHHHHHHHHhhCHH-HHHHHHHHHHHHccCCChhHHHHHHHHHHHHcccc------cHHHHHHHHHHHHHhCCHH
Confidence 7899999999998876553 34445566777788999999999999999998742 2345566666677778899
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcC--
Q 004960 394 VRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALEN-- 471 (721)
Q Consensus 394 vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~-- 471 (721)
+|..+..+++.++..+++... ..++.+++.+.+....++..+...+..++...++ +. ..++..+...+.+
T Consensus 401 ~r~~~v~~I~~la~k~~~~~~----~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~-l~---~~~v~~L~~~l~~~~ 472 (618)
T 1w63_A 401 FKADCASGIFLAAEKYAPSKR----WHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVE-MH---AYTVQRLYKAILGDY 472 (618)
T ss_dssp HHHHHHHHHHHHHHSSCCCHH----HHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCS-TH---HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHhCccHH----HHHHHHHHHHHhccchhHHHHHHHHHHHHhcChh-HH---HHHHHHHHHHHhccc
Confidence 999999999999998754433 4455555556655555677778888888876543 22 2344455555543
Q ss_pred CChhHHHHHHHHHHHHHHHhhhc-------chhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhccCCh
Q 004960 472 SPRNLQETCMSAIGSVAAAAEQA-------FIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPIL 544 (721)
Q Consensus 472 ~~~~v~~~~l~~l~~l~~~~~~~-------~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 544 (721)
....+...+++++|..+....+. +...-..+++.+..++... .++..+|..++.++..+....+ +..
T Consensus 473 ~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~vr~~~lta~~Kl~~~~~-----~~~ 546 (618)
T 1w63_A 473 SQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISN-MSTSVTRGYALTAIMKLSTRFT-----CTV 546 (618)
T ss_dssp SCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHST-TCCHHHHHHHHHHHHHHHTTCS-----SCH
T ss_pred ccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHhCc-----chH
Confidence 22334446888999887765331 0011233455566655432 2334567777777777764332 223
Q ss_pred HHHHHHHHhccCCCChhhHHHHHHHHHHHHH
Q 004960 545 PPFVEAAISGFGLEFSELREYTHGFFSNIAG 575 (721)
Q Consensus 545 ~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~ 575 (721)
+.+...+-...++.+.++|+.+..++.-+..
T Consensus 547 ~~l~~~L~~~~~~~d~evrdRA~~y~~ll~~ 577 (618)
T 1w63_A 547 NRIKKVVSIYGSSIDVELQQRAVEYNALFKK 577 (618)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC
Confidence 3343433344556789999999888776643
No 37
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.79 E-value=9.2e-15 Score=169.14 Aligned_cols=625 Identities=10% Similarity=0.062 Sum_probs=366.2
Q ss_pred ChHHHHHHHHHHHHHh------cCCCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhh----hcCCCHHH----------
Q 004960 16 DNDARRQAEDQIKRLA------KDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGH----WAKLSPQL---------- 75 (721)
Q Consensus 16 d~~~r~~A~~~L~~~~------~~p~~~~~l~~il~~~~~~~vr~~a~~~l~~~i~~~----w~~~~~~~---------- 75 (721)
+...|++..+.+..+. ..|+++..+++.+. .++..+..+...|+...... +......-
T Consensus 113 ~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~--~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~ 190 (1049)
T 3m1i_C 113 QKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS--SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSK 190 (1049)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHc--cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence 3567777777776543 24788888888774 35556666666666554321 11122211
Q ss_pred -HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHccccCC-CCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhh-hhc
Q 004960 76 -KQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPA-GEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETI-GQT 152 (721)
Q Consensus 76 -~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~-~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~-~~~ 152 (721)
...|...+.+.+....+..++..+..++.......... -..+.+++.+.+.+. .++..+..|+.|+..++... ++.
T Consensus 191 ~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~~~~~~ 269 (1049)
T 3m1i_C 191 EFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFM-TSPDTRAITLKCLTEVSNLKIPQD 269 (1049)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHCCCCTT
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhC-CCHhHHHHHHHHHHHHHhCCCCcc
Confidence 22233344555554456788888888887765421100 012456777664332 26788999999999998652 111
Q ss_pred ---ccccH----HHHHHHHHH-h----------h--CCCCCHHHHHHHHHHHHHhhhhc----CChhhHHHHHhhHHHHH
Q 004960 153 ---FRPHF----ADMQALLLK-C----------L--QDETSNRVRIAALKAIGSFLEFT----NDGAEVVKFREFIPSIL 208 (721)
Q Consensus 153 ---~~~~~----~~l~~~l~~-~----------l--~~~~~~~vr~~a~~~l~~l~~~~----~~~~~~~~~~~~l~~ll 208 (721)
+...+ +.++..+.. . . .++.+.......++.+..+.+.. ..+.. ....+..++
T Consensus 270 ~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~l~~~l 346 (1049)
T 3m1i_C 270 NDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDES---LRELLLNAH 346 (1049)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGG---GHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChh---hHHHHHHHH
Confidence 11112 233332222 1 1 11134444445555554443321 01000 233455566
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHhc----C--cccchhhhHHHHHHHHHHhhcCCC----------------C-Ch--
Q 004960 209 NVSRQCLASGEEDVAVIAFEIFDELIE----S--PAPLLGDSVKSIVHFSLEVSSSHN----------------L-EP-- 263 (721)
Q Consensus 209 ~~l~~~l~~~~~~~~~~a~~~l~~l~~----~--~~~~~~~~~~~l~~~~~~~~~~~~----------------~-~~-- 263 (721)
+.+..+...++.++...++..|..+.+ . ....+.++++.+++.++..+..++ . +.
T Consensus 347 ~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~ 426 (1049)
T 3m1i_C 347 QYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDT 426 (1049)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHH
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchH
Confidence 666556666788999999999999877 2 234566778888877776542210 0 11
Q ss_pred -HHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcCc----cccHhH
Q 004960 264 -NTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAK----HVFPPV 338 (721)
Q Consensus 264 -~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~----~~~~~i 338 (721)
..|..+-+++..++...+..+ ++.+.+.+-..+... ..+|..+.++..+++.++...+. .+++.+
T Consensus 427 ~~~~~~~~~~L~~l~~~~~~~~-----l~~v~~~l~~~l~~~-----~~~W~~~eaal~algsia~~~~~~~e~~~l~~v 496 (1049)
T 3m1i_C 427 IQLYKSEREVLVYLTHLNVIDT-----EEIMISKLARQIDGS-----EWSWHNINTLSWAIGSISGTMSEDTEKRFVVTV 496 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHH-----HHHHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHH-----HHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHHHhcccCchhhHHHHHHH
Confidence 234455667777765433321 333333333333321 23488899999999988765542 235666
Q ss_pred HHHHHhhhcC-----CChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHH
Q 004960 339 FEFASVSCQN-----ASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEI 413 (721)
Q Consensus 339 ~~~l~~~l~~-----~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 413 (721)
++.+...... +....|..+++++|..++..... ..+++.+++.++..+.|+++.|+..|++++.++++.++..+
T Consensus 497 ~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~-~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l 575 (1049)
T 3m1i_C 497 IKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAH-WNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHF 575 (1049)
T ss_dssp HHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHC-HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666553321 23334446788888877654332 35688999999999999999999999999999999988776
Q ss_pred H--------HhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhh--hccccchHHHHHHHHHhhcC--------C---
Q 004960 414 V--------SHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMG--EEILPFLDPLMGKLLAALEN--------S--- 472 (721)
Q Consensus 414 ~--------~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~--~~~~~~~~~i~~~l~~~l~~--------~--- 472 (721)
. +|+++++..+...+...+..-......+++.++...+ +...+|+..+++.+...+.. .
T Consensus 576 ~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 655 (1049)
T 3m1i_C 576 VIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLL 655 (1049)
T ss_dssp HSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGG
T ss_pred hcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhh
Confidence 5 7889999988888877666667788899999998776 34556777766554433221 0
Q ss_pred -Chh-HH--HHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHhc------------------------------------
Q 004960 473 -PRN-LQ--ETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVL------------------------------------ 512 (721)
Q Consensus 473 -~~~-v~--~~~l~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~------------------------------------ 512 (721)
+.+ ++ ...+.+++.++...|..|.|+++.+++.+...++.
T Consensus 656 ~d~~~~~~l~~~l~~~~~~~~~l~~~f~p~~~~i~~~~l~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~l~~ll 735 (1049)
T 3m1i_C 656 LDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLV 735 (1049)
T ss_dssp GSHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchhhhhHHHHHHHHHHHHHHHHH
Confidence 111 12 34567778888888888887766555432221110
Q ss_pred ------cC----------chhhh--hH-----------HHHHHHHHHHHHhhchhhccCChHHHHHHHHhcc----C---
Q 004960 513 ------TN----------DEDLR--SR-----------ARATELLGLVAESVGRARMEPILPPFVEAAISGF----G--- 556 (721)
Q Consensus 513 ------~~----------~~~~~--~~-----------~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l----~--- 556 (721)
.. ++... +. ..++.+++.++..+|. .+.++++.+++.+.... +
T Consensus 736 ~~~~~~~~~l~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~l~~~ii~~~~~-~~~~~l~~i~~~l~~~~~~~i~~~~ 814 (1049)
T 3m1i_C 736 ETYISKARNLDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGH-MIPQGVILILQSVFECTLDMINKDF 814 (1049)
T ss_dssp HHHHHHCSCHHHHHHHTHHHHHHHHHHHHHHSCGGGCCTHHHHHHHHHHHHHGG-GCHHHHHHHHHHHHHHHHHHHSSCS
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHHHHHhcch
Confidence 00 00000 00 1256666777777763 66777777777776553 2
Q ss_pred CCChhhHHHHHHHHHHHHHHcccCcccc----hhhhHHHHHhhccCCCCCccCCCCCccccccCCCCCCCCchhhhhccc
Q 004960 557 LEFSELREYTHGFFSNIAGVLEDGFAQY----LPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSV 632 (721)
Q Consensus 557 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~----l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (721)
++++++|...+.+++++++.....+.+. +..++...+.++.
T Consensus 815 ~~~pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~v~~~~~~al~----------------------------------- 859 (1049)
T 3m1i_C 815 TEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFK----------------------------------- 859 (1049)
T ss_dssp SSSHHHHHHHHHHHHHHHHHCTHHHHHSCHHHHHHHHHHHHHHHT-----------------------------------
T ss_pred hhCHHHHHHHHHHHHHHHHhCHHHHHcCCHHHHHHHHHHHHHHhC-----------------------------------
Confidence 3589999999999999998777655432 2333333333332
Q ss_pred cceeeecchhhhHHHHHHHHHHHHHHccc----c-----ccchHHHHHHHHHhcccC-CChhHHHHHHHHHHHHHHH
Q 004960 633 RNISVRTGVLDEKAAATQALGLFALHTKS----S-----YAPFLEESLKILVRHASY-FHEDVRYQAVFALKNILTA 699 (721)
Q Consensus 633 ~~~~~~~~~~~~k~~a~~~l~~~~~~~~~----~-----~~~~~~~~~~~l~~~~~~-~~~~vr~~a~~~l~~l~~~ 699 (721)
....+...++++++..+....+. . +..|...++..+...+.+ .+..--..-...|.+++..
T Consensus 860 ------~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~~l~~~~h~s~~~~~~~~l~~l~~~ 930 (1049)
T 3m1i_C 860 ------HNNRDVEVNGLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETFFVLTDSDHKSGFSKQALLLMKLISL 930 (1049)
T ss_dssp ------CCSHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHH
T ss_pred ------CCCchHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhcchHhhhHHHHHHHHHHHHHH
Confidence 22234567788888887665432 1 223555666666555433 3444444555566665553
No 38
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.79 E-value=9.7e-17 Score=169.92 Aligned_cols=362 Identities=15% Similarity=0.140 Sum_probs=255.9
Q ss_pred hHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhh-cccccH-HHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhh
Q 004960 119 LLPFLFQFSQSEQEEHREVALILFSSLTETIGQ-TFRPHF-ADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAE 196 (721)
Q Consensus 119 ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~-~~~~~~-~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~ 196 (721)
-++.+.+.++|++.+.+..|+..++.+...-.+ .+...+ ..++|.|.++|....++.++..|+++|.+++...++...
T Consensus 58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~ 137 (510)
T 3ul1_B 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 137 (510)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 389999999999999999999999988743221 111112 356899999998646799999999999999875432211
Q ss_pred HHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcccchhhhHH-HHHHHHHHhhcCCC---CChHHHHHHHHH
Q 004960 197 VVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVK-SIVHFSLEVSSSHN---LEPNTRHQAIQI 272 (721)
Q Consensus 197 ~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~l~~~~~~~~~~~~---~~~~~r~~a~~~ 272 (721)
...-...+|.++. .+.+++++++..|+++|+.++...+..-...+. ..++.++..+...+ ........+...
T Consensus 138 ~vv~~GaIp~Lv~----lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~ 213 (510)
T 3ul1_B 138 AVVDGGAIPAFIS----LLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWT 213 (510)
T ss_dssp HHHHTTHHHHHHH----HTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHH
T ss_pred HHHHCCCHHHHHH----HHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHH
Confidence 1122356777777 677889999999999999999876543222221 23455555555432 123456677777
Q ss_pred HHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcCcc---c-cHhHHHHHHhhhcC
Q 004960 273 ISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKH---V-FPPVFEFASVSCQN 348 (721)
Q Consensus 273 l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~---~-~~~i~~~l~~~l~~ 348 (721)
+..++....... .......+++.+..++...+ ...+..+..++..++....+. + -..+++.+.+.+.+
T Consensus 214 L~nl~~~~~~~~-~~~~~~~~lp~L~~LL~~~~-------~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~ 285 (510)
T 3ul1_B 214 LSNLCRNKNPAP-PLDAVEQILPTLVRLLHHND-------PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA 285 (510)
T ss_dssp HHHHHCCCSSCC-CHHHHHHHHHHHHHHTTCSC-------HHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTC
T ss_pred HHHHhhcccchh-HHHHHHhHHHHHHHHHhcCC-------HHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcC
Confidence 777775432110 00123456777777776543 457777888888877533211 1 12357778888899
Q ss_pred CChhhHhHHHHHHHHHhhccHHHHHHhH-HHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhh-hhHHHHHHH
Q 004960 349 ASPKYREAAVTAIGIISEGCAEWMKEKL-ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY-ESVLPCILN 426 (721)
Q Consensus 349 ~~~~~r~~al~~l~~i~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~l~~l~~ 426 (721)
.+...+..++.++++++.+........+ ...++.+..+++++++.+|..|+|+|++++...+....... .+++|.++.
T Consensus 286 ~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~ 365 (510)
T 3ul1_B 286 TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG 365 (510)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH
T ss_pred CChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHH
Confidence 9999999999999999877654333222 34677888889999999999999999999876554433333 579999999
Q ss_pred hccCCChHHHHHHHHHHHHHHHhhhhccccch--HHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhh
Q 004960 427 ALEDESDEVKEKSYYALAAFCEDMGEEILPFL--DPLMGKLLAALENSPRNLQETCMSAIGSVAAAAE 492 (721)
Q Consensus 427 ~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~ 492 (721)
.+.+.+..+|..|+++|.+++.........++ .++++.|..++.+.+.+++..++++|..+....+
T Consensus 366 lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~ 433 (510)
T 3ul1_B 366 VLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE 433 (510)
T ss_dssp HHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999886543322222 2678889999999999999999999999887654
No 39
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.79 E-value=1.2e-16 Score=170.47 Aligned_cols=365 Identities=15% Similarity=0.126 Sum_probs=259.4
Q ss_pred CcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhh-ccccc-HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCC
Q 004960 116 WPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQ-TFRPH-FADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTND 193 (721)
Q Consensus 116 ~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~-~~~~~-~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~ 193 (721)
....++.+.+.++++++..+..|+..+..+...... .+... -..++|.+.++|....++.++..|+++|.+++....+
T Consensus 74 ~~~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~ 153 (529)
T 3tpo_A 74 VNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSE 153 (529)
T ss_dssp SSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHH
Confidence 345689999999999999999999999887643221 11111 2457899999997647899999999999999876433
Q ss_pred hhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcccchhhhHH-HHHHHHHHhhcCCC---CChHHHHHH
Q 004960 194 GAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVK-SIVHFSLEVSSSHN---LEPNTRHQA 269 (721)
Q Consensus 194 ~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~l~~~~~~~~~~~~---~~~~~r~~a 269 (721)
..........+|.++. .+.+++++++..|+++|+.++...+..-...+. ..++.++..+...+ ........+
T Consensus 154 ~~~~vv~~Gaip~Lv~----LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a 229 (529)
T 3tpo_A 154 QTKAVVDGGAIPAFIS----LLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 229 (529)
T ss_dssp HHHHHHHTTHHHHHHH----HTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHH
T ss_pred HHHHHHHCCCHHHHHH----HHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHH
Confidence 2222222456777776 678889999999999999999876543322222 23455555555432 123456677
Q ss_pred HHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcCcc----ccHhHHHHHHhh
Q 004960 270 IQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKH----VFPPVFEFASVS 345 (721)
Q Consensus 270 ~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~----~~~~i~~~l~~~ 345 (721)
.+.+..++....... .......+++.+..++...+ ...+..+..++..++....+. .-..+++.+.+.
T Consensus 230 ~~~L~nl~~~~~~~~-~~~~~~~~lp~L~~LL~~~~-------~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~l 301 (529)
T 3tpo_A 230 TWTLSNLCRNKNPAP-PLDAVEQILPTLVRLLHHND-------PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKL 301 (529)
T ss_dssp HHHHHHHHCCCTTCC-CHHHHHHHHHHHHHHTTSSC-------HHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHhcccchh-hHHHHhhHHHHHHHHhcCCc-------HHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHH
Confidence 777777775432110 00123556777777776543 456777888888877533211 113457777888
Q ss_pred hcCCChhhHhHHHHHHHHHhhccHHHHHHhH-HHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhh-hhHHHH
Q 004960 346 CQNASPKYREAAVTAIGIISEGCAEWMKEKL-ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY-ESVLPC 423 (721)
Q Consensus 346 l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~l~~ 423 (721)
+.++++..+..++.++++++.+........+ ...++.+..+++++++.+|..|+|+|++++...+....... .+++|.
T Consensus 302 L~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~ 381 (529)
T 3tpo_A 302 LGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPF 381 (529)
T ss_dssp HTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHH
T ss_pred hcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHH
Confidence 8999999999999999999977654332222 35678889999999999999999999999987554433333 579999
Q ss_pred HHHhccCCChHHHHHHHHHHHHHHHhhhhccccch--HHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhh
Q 004960 424 ILNALEDESDEVKEKSYYALAAFCEDMGEEILPFL--DPLMGKLLAALENSPRNLQETCMSAIGSVAAAAE 492 (721)
Q Consensus 424 l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~ 492 (721)
++..+.+.+..++..|+++|.+++.........++ .++++.|..++...+..++..++.+|..+....+
T Consensus 382 Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~ 452 (529)
T 3tpo_A 382 LVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE 452 (529)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999999876543322222 2578889999999999999999999999887544
No 40
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.78 E-value=7.3e-17 Score=179.28 Aligned_cols=503 Identities=11% Similarity=0.052 Sum_probs=315.7
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHhc---CCCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhcCCCHHHHHHHH
Q 004960 4 SLELLLIQFLMPDNDARRQAEDQIKRLAK---DPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVK 80 (721)
Q Consensus 4 ~l~~ll~~~~s~d~~~r~~A~~~L~~~~~---~p~~~~~l~~il~~~~~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i~ 80 (721)
.+..+++.+.+++.+.|..+.+.+..... ..+.++.|...+. +.++.+|..|+..|.+.....-....-.....+.
T Consensus 116 ~i~~lv~~L~~~~~~~r~~a~~~l~~~~~~~i~~g~ip~Lv~lL~-~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i 194 (780)
T 2z6g_A 116 AHPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLN-DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMV 194 (780)
T ss_dssp ----------CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHH
T ss_pred cHHHHHHHhcCccHHHHHHHHHHHHhhhHHHHHhCCHHHHHHHHC-CCCHHHHHHHHHHHHHHhCCChhHHHHHhccChH
Confidence 35677888888888888887777753211 1467888888876 4688999999999988754310000000012455
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHccccCCC--CCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccccH-
Q 004960 81 QSLIESITLEHSAPVRRASANVVSIIAKYAVPAG--EWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHF- 157 (721)
Q Consensus 81 ~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~--~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~- 157 (721)
..|++.|.++.+..+|..++.++..++....+.. .-...++.|.++++++++..+..|+.+|.+++...++......
T Consensus 195 ~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~ 274 (780)
T 2z6g_A 195 SAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRL 274 (780)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHH
Confidence 6677778765689999999999999875321100 1136799999999999999999999999999976433222222
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCH-HHHHHHHHHHHHHhcC
Q 004960 158 ADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEE-DVAVIAFEIFDELIES 236 (721)
Q Consensus 158 ~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~-~~~~~a~~~l~~l~~~ 236 (721)
...++.+..++.+ ++..++..++.++..+.....+......-...++.++. .+.+.++ .....+..++..+...
T Consensus 275 ~g~v~~Lv~lL~~-~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~----lL~~~~~~~~~~~a~~aL~~Ls~~ 349 (780)
T 2z6g_A 275 AGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVN----IMRTYTYEKLLWTTSRVLKVLSVC 349 (780)
T ss_dssp TTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHH----HHTTCCCHHHHHHHHHHHHHHHTS
T ss_pred cCCHHHHHHHHhc-CCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHH----HHhcCCHHHHHHHHHHHHHHhhcC
Confidence 4678899999988 88999999999988776432111110011234555665 4444443 4455677788877754
Q ss_pred cccchhhhH-HHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcH
Q 004960 237 PAPLLGDSV-KSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAP 315 (721)
Q Consensus 237 ~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~ 315 (721)
.. .....+ ...++.++..+.+. +..++..++.++..++...+.. .....+++.++.++...+ +..
T Consensus 350 ~~-~~~~i~~~g~l~~Ll~lL~~~--~~~~~~~a~~~L~~L~~~~~~~----~~~~~~i~~Lv~lL~~~d-------~~v 415 (780)
T 2z6g_A 350 SS-NKPAIVEAGGMQALGLHLTDP--SQRLVQNCLWTLRNLSDAATKQ----EGMEGLLGTLVQLLGSDD-------INV 415 (780)
T ss_dssp TT-HHHHHHHTTHHHHHGGGTTCS--CHHHHHHHHHHHHHHHTTCTTC----SCCHHHHHHHHHHTTCSC-------HHH
T ss_pred hH-HHHHHHHhchHHHHHHHHcCC--chHHHHHHHHHHHHHhccchhh----hhhhhHHHHHHHHHcCCC-------HHH
Confidence 32 122221 23456666666555 6788999999999998654321 234567777888776433 678
Q ss_pred HHHHHHHHHHHHHHcCc---ccc-HhHHHHHHhhhcC-CCh-hhHhHHHHHHHHHhhccHHH--HHHh--HHHHHHHHHh
Q 004960 316 DRAAAEVIDTMALNLAK---HVF-PPVFEFASVSCQN-ASP-KYREAAVTAIGIISEGCAEW--MKEK--LESVLHIVLG 385 (721)
Q Consensus 316 ~~~a~~~l~~l~~~~~~---~~~-~~i~~~l~~~l~~-~~~-~~r~~al~~l~~i~~~~~~~--~~~~--l~~i~~~l~~ 385 (721)
+..+..++..++..... .+. ...++.+.+.+.+ .++ ..|..|+.+++.++...++. .... -...++.+..
T Consensus 416 r~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~ 495 (780)
T 2z6g_A 416 VTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVK 495 (780)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHH
Confidence 88888888888653221 011 2245555555543 333 89999999999998654321 1111 1345788899
Q ss_pred hcCCCC-HhHHHHHHHHHHHHHhhhhHHHHHhh-hhHHHHHHHhccCCCh----------------------HHHHHHHH
Q 004960 386 ALRDPE-QFVRGAASFALGQFAEYLQPEIVSHY-ESVLPCILNALEDESD----------------------EVKEKSYY 441 (721)
Q Consensus 386 ~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~l~~l~~~l~~~~~----------------------~v~~~a~~ 441 (721)
.+.+++ +.||..|+++|++++...... .... .++++.|++.+.+.+. .++..++.
T Consensus 496 lL~~~~~~~v~~~A~~aL~nLa~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~ 574 (780)
T 2z6g_A 496 LLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTG 574 (780)
T ss_dssp TTSTTCCHHHHHHHHHHHHHHHSSHHHH-HHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHH
T ss_pred HhcCCChHHHHHHHHHHHHHHhcCHHHH-HHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHH
Confidence 998776 599999999999998653221 2222 4677888777765432 35566667
Q ss_pred HHHHHHHhhhhccccc-hHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhcchhhHHH--HHHHHHHHHhccCchhh
Q 004960 442 ALAAFCEDMGEEILPF-LDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAER--VLELLKIFMVLTNDEDL 518 (721)
Q Consensus 442 al~~l~~~~~~~~~~~-~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~~~~~~~~~--i~~~l~~~l~~~~~~~~ 518 (721)
+|.+++...... ... -...++.|..++.+.+..++..+..++..++.. ......+.. .++.|..++. +++.
T Consensus 575 aL~~La~~~~~~-~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~--~~~~~~i~~~g~i~~L~~Ll~---~~~~ 648 (780)
T 2z6g_A 575 ALHILARDIHNR-IVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KEAAEAIEAEGATAPLTELLH---SRNE 648 (780)
T ss_dssp HHHHHTTSHHHH-HHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTCHHHHHHGGG---CSCH
T ss_pred HHHHHhcChhhH-HHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC--HHHHHHHHHCCCHHHHHHHHc---CCCH
Confidence 777665321110 000 124577888999999999999999999888632 112222222 3455555553 3455
Q ss_pred hhHHHHHHHHHHHHH
Q 004960 519 RSRARATELLGLVAE 533 (721)
Q Consensus 519 ~~~~~~~~~l~~l~~ 533 (721)
.+|..|..++..++.
T Consensus 649 ~Vr~~A~~aL~~l~~ 663 (780)
T 2z6g_A 649 GVATYAAAVLFRMSE 663 (780)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHc
Confidence 678888888888874
No 41
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.77 E-value=1.7e-18 Score=162.98 Aligned_cols=210 Identities=12% Similarity=0.139 Sum_probs=179.0
Q ss_pred ccHhHHHHHHhhhcCCChhhHhHHHHHHHH-HhhccHHHH--HHhHHHHHHHHHhhc-CCCCHhHHHHHHHHHHHHHhhh
Q 004960 334 VFPPVFEFASVSCQNASPKYREAAVTAIGI-ISEGCAEWM--KEKLESVLHIVLGAL-RDPEQFVRGAASFALGQFAEYL 409 (721)
Q Consensus 334 ~~~~i~~~l~~~l~~~~~~~r~~al~~l~~-i~~~~~~~~--~~~l~~i~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~ 409 (721)
+++.+=+.+.+.+.+.+|..|.+|+..++. +++++++.. ...+.+++..+.+.+ +|.|+.||..|+.+++.+++.+
T Consensus 13 i~~kl~~~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l 92 (249)
T 2qk1_A 13 ILDKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKL 92 (249)
T ss_dssp CGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhCChhHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhc
Confidence 334343345566789999999999999999 987765433 233457788899999 7999999999999999999999
Q ss_pred h-HHHH-HhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccc-cchHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 004960 410 Q-PEIV-SHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEIL-PFLDPLMGKLLAALENSPRNLQETCMSAIGS 486 (721)
Q Consensus 410 ~-~~~~-~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~-~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~ 486 (721)
+ +.+. +|...++|.++..+.+....|+..+..++..++..+++... +|++.+++.|...+++.++.+|+.++.+++.
T Consensus 93 ~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~ 172 (249)
T 2qk1_A 93 KTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNA 172 (249)
T ss_dssp CTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 8 7888 89999999999999999999999999999999998865332 4599999999999999999999999999999
Q ss_pred HHHHhh---hcchhhH-HHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhccCChHH
Q 004960 487 VAAAAE---QAFIPYA-ERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPP 546 (721)
Q Consensus 487 l~~~~~---~~~~~~~-~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 546 (721)
++...+ ..+.+|+ +.++|.+.+.+. +.+..+|..+.+|++.++..+|.+.+.||++.
T Consensus 173 ~~~~~~~~~~~l~~~l~~~iip~l~~~l~---D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~ 233 (249)
T 2qk1_A 173 SMKEEKDGYSTLQRYLKDEVVPIVIQIVN---DTQPAIRTIGFESFAILIKIFGMNTFVKTLEH 233 (249)
T ss_dssp HHHHCCSCSHHHHHHHTTTHHHHHHHHHT---CSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHH
T ss_pred HHHHcCCcchhHHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 999887 5688999 999999999984 34567999999999999999998777776655
No 42
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.77 E-value=5.3e-16 Score=169.93 Aligned_cols=457 Identities=10% Similarity=0.026 Sum_probs=307.3
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHhcCC----------CcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhcCCCHH
Q 004960 5 LELLLIQFLMPDNDARRQAEDQIKRLAKDP----------QVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQ 74 (721)
Q Consensus 5 l~~ll~~~~s~d~~~r~~A~~~L~~~~~~p----------~~~~~l~~il~~~~~~~vr~~a~~~l~~~i~~~w~~~~~~ 74 (721)
+..++..+.++|..+|..|...|.++..++ +.+..++..+.++.++.+|..|+..|++.... ++
T Consensus 16 i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~------~~ 89 (644)
T 2z6h_A 16 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH------RE 89 (644)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS------HH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC------hh
Confidence 455666667889999999999998876543 45778888887766899999999988865432 22
Q ss_pred HHHH-----HHHHHHHHHhhcCCHHHHHHHHHHHHHHHccccCCC-C--CcchHHHHHHhccCCcHHHHHHHHHHHHHhh
Q 004960 75 LKQL-----VKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAG-E--WPDLLPFLFQFSQSEQEEHREVALILFSSLT 146 (721)
Q Consensus 75 ~~~~-----i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~-~--~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~ 146 (721)
.+.. ....|++.|.+ +++.++..++.++..++....+.. . -...+|.|.+.++++++..+..++.++..++
T Consensus 90 ~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La 168 (644)
T 2z6h_A 90 GLLAIFKSGGIPALVKMLGS-PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 168 (644)
T ss_dssp HHHHHHTTTHHHHHHHHTTC-SSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHcCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHH
Confidence 2222 34466677764 789999999999999987532110 0 1568999999999999888888889999888
Q ss_pred hhhhhcccc-cHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHH
Q 004960 147 ETIGQTFRP-HFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVI 225 (721)
Q Consensus 147 ~~~~~~~~~-~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~ 225 (721)
...++.-.. .-...++.+.+++.+.....++..++.++..+.... .......-...++.++. .+.+++.+++..
T Consensus 169 ~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~-~~~~~l~~~g~l~~L~~----ll~~~~~~~~~~ 243 (644)
T 2z6h_A 169 YGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGL----HLTDPSQRLVQN 243 (644)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCT-THHHHHHHTTHHHHHHT----TTTCSCHHHHHH
T ss_pred hcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCc-ccHHHHHHCCCHHHHHH----HHhcCCHHHHHH
Confidence 533221100 113457788888887456778888888988887532 22111111234555555 667778999999
Q ss_pred HHHHHHHHhcCcccchhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhh---hhhcCChHHHHHHHHhhhc
Q 004960 226 AFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNS---LKKHKLVIPILQVMCPLLA 302 (721)
Q Consensus 226 a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~~~~~~il~~l~~~l~ 302 (721)
++++|..+....+.. .....+++.++..+.++ +.++|..+..++..++...+.. +... ..++.++.++.
T Consensus 244 a~~~L~nL~~~~~~~--~~~~~~i~~Lv~lL~~~--d~~v~~~a~~aL~~L~~~~~~~~~~v~~~----g~v~~Lv~lL~ 315 (644)
T 2z6h_A 244 CLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSD--DINVVTCAAGILSNLTCNNYKNKMMVCQV----GGIEALVRTVL 315 (644)
T ss_dssp HHHHHHHHGGGCTTC--CSCHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHT----THHHHHHHHHH
T ss_pred HHHHHHHHhhcchhh--hhhhhHHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHc----CCHHHHHHHHH
Confidence 999999998765432 12235566666666655 6889999999999998643221 1111 24555666665
Q ss_pred cCCCCCCCCCCcHHHHHHHHHHHHHHHcCc-c-----cc-HhHHHHHHhhhcCC-ChhhHhHHHHHHHHHhhccHHHHHH
Q 004960 303 ESNEAGEDDDLAPDRAAAEVIDTMALNLAK-H-----VF-PPVFEFASVSCQNA-SPKYREAAVTAIGIISEGCAEWMKE 374 (721)
Q Consensus 303 ~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~-~-----~~-~~i~~~l~~~l~~~-~~~~r~~al~~l~~i~~~~~~~~~~ 374 (721)
... +....+..+..++..++...++ . +. ...++.+.+.+.++ ++..+..+++++++++.+.... ..
T Consensus 316 ~~~-----~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~-~~ 389 (644)
T 2z6h_A 316 RAG-----DREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-AP 389 (644)
T ss_dssp HHT-----TCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH-HH
T ss_pred ccC-----CcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHH-HH
Confidence 432 1135777788888887643331 0 11 24577777888776 4899999999999998754322 11
Q ss_pred h-HHHHHHHHHhhcCCCC----------------------HhHHHHHHHHHHHHHhhhhHHHHHhh--hhHHHHHHHhcc
Q 004960 375 K-LESVLHIVLGALRDPE----------------------QFVRGAASFALGQFAEYLQPEIVSHY--ESVLPCILNALE 429 (721)
Q Consensus 375 ~-l~~i~~~l~~~l~d~~----------------------~~vr~~a~~~l~~l~~~~~~~~~~~~--~~~l~~l~~~l~ 429 (721)
. -..+++.++..+.+.+ ..++..++.+|..++... .....+ .+.++.+++.+.
T Consensus 390 i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~--~~~~~l~~~~~i~~Lv~lL~ 467 (644)
T 2z6h_A 390 LREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV--HNRIVIRGLNTIPLFVQLLY 467 (644)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSH--HHHHHHHHTTCHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCH--HHHHHHHhCCcHHHHHHHHc
Confidence 1 1245666666665543 345556666666666543 222222 478999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhhhhccccch--HHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHh
Q 004960 430 DESDEVKEKSYYALAAFCEDMGEEILPFL--DPLMGKLLAALENSPRNLQETCMSAIGSVAAAA 491 (721)
Q Consensus 430 ~~~~~v~~~a~~al~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~ 491 (721)
+.++.++..++++|.++...- .....+ ...++.|..++.+.++.+|..+..+++.++...
T Consensus 468 ~~~~~v~~~a~~aL~~l~~~~--~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~ 529 (644)
T 2z6h_A 468 SPIENIQRVAAGVLCELAQDK--EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDK 529 (644)
T ss_dssp CSCHHHHHHHHHHHHHHHTSH--HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTS
T ss_pred CCCHHHHHHHHHHHHHHHcCH--HHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccC
Confidence 999999999999999987531 111111 134667888889999999999999999886544
No 43
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.76 E-value=2e-15 Score=165.36 Aligned_cols=472 Identities=10% Similarity=0.030 Sum_probs=305.4
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHccccCC---CCCcchHHHHHHhccCC-cHHHHHHHHHHHHHhhhhhhhcccc
Q 004960 80 KQSLIESITLEHSAPVRRASANVVSIIAKYAVPA---GEWPDLLPFLFQFSQSE-QEEHREVALILFSSLTETIGQTFRP 155 (721)
Q Consensus 80 ~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~---~~~~~ll~~l~~~l~~~-~~~~~~~al~~l~~i~~~~~~~~~~ 155 (721)
...|+..|. +.++.+|..++.+++.++...... ..-+..++.+.+.+.++ ++..+..|+.+|..+.........-
T Consensus 16 i~~Lv~lL~-~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i 94 (644)
T 2z6h_A 16 IPELTKLLN-DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI 94 (644)
T ss_dssp HHHHHHHHT-CSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHH
Confidence 345666666 479999999999999998754211 01246789999999865 7888999999999887543211100
Q ss_pred cHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 004960 156 HFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIE 235 (721)
Q Consensus 156 ~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~ 235 (721)
.-...++.+.+++.+ +++.++..|+.+|.++....+.......-...+|.++. .+.+++++++..++.+|..++.
T Consensus 95 ~~~g~i~~Lv~lL~~-~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~----lL~~~~~~~~~~a~~~L~~La~ 169 (644)
T 2z6h_A 95 FKSGGIPALVKMLGS-PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVA----LLNKTNVKFLAITTDCLQILAY 169 (644)
T ss_dssp HTTTHHHHHHHHTTC-SSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHH----GGGCCCHHHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHH----HHCcCCHHHHHHHHHHHHHHHh
Confidence 113578888999998 89999999999999998775433221112456777766 6777788888888889998886
Q ss_pred CcccchhhhH-HHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHh--hhhhcCChHHHHHHHHhhhccCCCCCCCCC
Q 004960 236 SPAPLLGDSV-KSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYN--SLKKHKLVIPILQVMCPLLAESNEAGEDDD 312 (721)
Q Consensus 236 ~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~~~~~~il~~l~~~l~~~~~~~~~~~ 312 (721)
..+..-.... ...++.++..+.+.+ .+..+..+..++..++..... .+.. ...++.++.++...+
T Consensus 170 ~~~~~~~~i~~~g~v~~Lv~lL~~~~-~~~~~~~a~~~L~nLs~~~~~~~~l~~----~g~l~~L~~ll~~~~------- 237 (644)
T 2z6h_A 170 GNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSVCSSNKPAIVE----AGGMQALGLHLTDPS------- 237 (644)
T ss_dssp TCHHHHHHHHHTTHHHHHHHHHTTCC-CHHHHHHHHHHHHHHTTCTTHHHHHHH----TTHHHHHHTTTTCSC-------
T ss_pred cCcHHHHHHHHcCChHHHHHHHHcCC-hHHHHHHHHHHHHHHhcCcccHHHHHH----CCCHHHHHHHHhcCC-------
Confidence 4332111111 123445555555543 566777888888877742211 1111 135566666665432
Q ss_pred CcHHHHHHHHHHHHHHHcCc-cccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhH-HHHHHHHHhhcCCC
Q 004960 313 LAPDRAAAEVIDTMALNLAK-HVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKL-ESVLHIVLGALRDP 390 (721)
Q Consensus 313 ~~~~~~a~~~l~~l~~~~~~-~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l-~~i~~~l~~~l~d~ 390 (721)
...+..+..++..++...+. .....+++.+.+.+.+.++..|..++.+++.++.+.+....... ...++.++..+.+.
T Consensus 238 ~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~ 317 (644)
T 2z6h_A 238 QRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA 317 (644)
T ss_dssp HHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHcc
Confidence 45777788888888765542 34467888888999999999999999999999886543222211 24677777777642
Q ss_pred --CHhHHHHHHHHHHHHHhhhhH--HHHH-h-hhhHHHHHHHhccCCC-hHHHHHHHHHHHHHHHhhhhccccch-HHHH
Q 004960 391 --EQFVRGAASFALGQFAEYLQP--EIVS-H-YESVLPCILNALEDES-DEVKEKSYYALAAFCEDMGEEILPFL-DPLM 462 (721)
Q Consensus 391 --~~~vr~~a~~~l~~l~~~~~~--~~~~-~-~~~~l~~l~~~l~~~~-~~v~~~a~~al~~l~~~~~~~~~~~~-~~i~ 462 (721)
.+.|+..|+++|++++...+. ..+. . -.+.++.|++.|.+++ ..++..++++|.++....... .... ..++
T Consensus 318 ~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~-~~i~~~~~i 396 (644)
T 2z6h_A 318 GDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAI 396 (644)
T ss_dssp TTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH-HHHHHTTHH
T ss_pred CCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHH-HHHHHcCCH
Confidence 379999999999999864332 1122 1 2478999999999875 689999999999997543221 1111 1445
Q ss_pred HHHHHhhcCC----------------------ChhHHHHHHHHHHHHHHHhhhcchhhH--HHHHHHHHHHHhccCchhh
Q 004960 463 GKLLAALENS----------------------PRNLQETCMSAIGSVAAAAEQAFIPYA--ERVLELLKIFMVLTNDEDL 518 (721)
Q Consensus 463 ~~l~~~l~~~----------------------~~~v~~~~l~~l~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~ 518 (721)
+.|.+++.+. +..+++.++.++..++.... ....+ ...+|.|..++.. .+.
T Consensus 397 ~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~--~~~~l~~~~~i~~Lv~lL~~---~~~ 471 (644)
T 2z6h_A 397 PRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVH--NRIVIRGLNTIPLFVQLLYS---PIE 471 (644)
T ss_dssp HHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHH--HHHHHHHTTCHHHHHHHTTC---SCH
T ss_pred HHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHH--HHHHHHhCCcHHHHHHHHcC---CCH
Confidence 5555555442 24456667777776654321 11111 2256666676643 233
Q ss_pred hhHHHHHHHHHHHHHhhchhhccCCh--HHHHHHHHhccCCCChhhHHHHHHHHHHHHHHcc
Q 004960 519 RSRARATELLGLVAESVGRARMEPIL--PPFVEAAISGFGLEFSELREYTHGFFSNIAGVLE 578 (721)
Q Consensus 519 ~~~~~~~~~l~~l~~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~ 578 (721)
.++..+..+++.++.. + .....+ ...++.+...++++++++|..+..+++.++..-+
T Consensus 472 ~v~~~a~~aL~~l~~~--~-~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~ 530 (644)
T 2z6h_A 472 NIQRVAAGVLCELAQD--K-EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP 530 (644)
T ss_dssp HHHHHHHHHHHHHHTS--H-HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHHcC--H-HHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCc
Confidence 5667777777777632 1 111111 1134556666778899999999999999876554
No 44
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.76 E-value=3.2e-16 Score=168.55 Aligned_cols=453 Identities=11% Similarity=0.026 Sum_probs=297.9
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHhcC----------CCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhcCCCHH
Q 004960 5 LELLLIQFLMPDNDARRQAEDQIKRLAKD----------PQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQ 74 (721)
Q Consensus 5 l~~ll~~~~s~d~~~r~~A~~~L~~~~~~----------p~~~~~l~~il~~~~~~~vr~~a~~~l~~~i~~~w~~~~~~ 74 (721)
+..++..+.++|...|..|...|..+..+ ++.+..++..+.+++++.+|..|+..|++.... ++
T Consensus 19 i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~------~~ 92 (529)
T 1jdh_A 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH------RE 92 (529)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS------HH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC------ch
Confidence 44555556688999999999999877542 356888888887767899999999999886432 22
Q ss_pred HHHH-----HHHHHHHHHhhcCCHHHHHHHHHHHHHHHccccCC-CC--CcchHHHHHHhccCCcHHHHHHHHHHHHHhh
Q 004960 75 LKQL-----VKQSLIESITLEHSAPVRRASANVVSIIAKYAVPA-GE--WPDLLPFLFQFSQSEQEEHREVALILFSSLT 146 (721)
Q Consensus 75 ~~~~-----i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~-~~--~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~ 146 (721)
.+.. ....+++.+.+ +++.++..++.++..++...... .. -...+|.+.+.+.++++..+..+..++..++
T Consensus 93 ~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la 171 (529)
T 1jdh_A 93 GLLAIFKSGGIPALVKMLGS-PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 171 (529)
T ss_dssp HHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 3333 33466677764 78999999999999998753210 00 2567999999999999999999999999887
Q ss_pred hhhhhccccc-HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHH
Q 004960 147 ETIGQTFRPH-FADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVI 225 (721)
Q Consensus 147 ~~~~~~~~~~-~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~ 225 (721)
...++.-... -...++.+...+.+......+..++.++..+.... +......-...++.++. .+.+++++++..
T Consensus 172 ~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~g~~~~L~~----ll~~~~~~~~~~ 246 (529)
T 1jdh_A 172 YGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGL----HLTDPSQRLVQN 246 (529)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTST-THHHHHHHTTHHHHHHT----TTTSSCHHHHHH
T ss_pred hCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCc-ccHHHHHHCCCHHHHHH----HHhCCChHHHHH
Confidence 5332211111 12456677777776355667777888888776532 22111111345555555 667778999999
Q ss_pred HHHHHHHHhcCcccchhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhh---hhhcCChHHHHHHHHhhhc
Q 004960 226 AFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNS---LKKHKLVIPILQVMCPLLA 302 (721)
Q Consensus 226 a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~~~~~~il~~l~~~l~ 302 (721)
+++++..+....+... ....+++.+.+.+.++ +++++..+...+..++...+.. +... ..++.++.++.
T Consensus 247 a~~~L~~l~~~~~~~~--~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~L~~~~~~~~~~~~~~----~~v~~L~~ll~ 318 (529)
T 1jdh_A 247 CLWTLRNLSDAATKQE--GMEGLLGTLVQLLGSD--DINVVTCAAGILSNLTCNNYKNKMMVCQV----GGIEALVRTVL 318 (529)
T ss_dssp HHHHHHHHHTTCTTCS--CCHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTTCHHHHHHHHHT----THHHHHHHHHH
T ss_pred HHHHHHHHhcCChhhH--HHHhHHHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCHHHHHHHHHc----CChHHHHHHHH
Confidence 9999999987654322 2245566666666554 7889999999999997643321 1111 24555666665
Q ss_pred cCCCCCCCCCCcHHHHHHHHHHHHHHHcCc------ccc-HhHHHHHHhhhcCCC-hhhHhHHHHHHHHHhhccHHHHHH
Q 004960 303 ESNEAGEDDDLAPDRAAAEVIDTMALNLAK------HVF-PPVFEFASVSCQNAS-PKYREAAVTAIGIISEGCAEWMKE 374 (721)
Q Consensus 303 ~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~------~~~-~~i~~~l~~~l~~~~-~~~r~~al~~l~~i~~~~~~~~~~ 374 (721)
... +....+..+..++..++...+. .+. ...++.+.+.+.+++ +..+..+++++++++.+.... ..
T Consensus 319 ~~~-----~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~-~~ 392 (529)
T 1jdh_A 319 RAG-----DREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-AP 392 (529)
T ss_dssp HHT-----TCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH-HH
T ss_pred ccC-----CHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhh-HH
Confidence 432 1245677788888877643321 111 134667777777765 799999999999999754322 11
Q ss_pred hH-HHHHHHHHhhcCCCCHhHHHHHHHHHHH----------------------HHhhhhHHHHHhh--hhHHHHHHHhcc
Q 004960 375 KL-ESVLHIVLGALRDPEQFVRGAASFALGQ----------------------FAEYLQPEIVSHY--ESVLPCILNALE 429 (721)
Q Consensus 375 ~l-~~i~~~l~~~l~d~~~~vr~~a~~~l~~----------------------l~~~~~~~~~~~~--~~~l~~l~~~l~ 429 (721)
.. ..+++.++..+.++++.+|..|+|++++ ++.. +.....+ .+.++.+++.+.
T Consensus 393 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~--~~~~~~l~~~~~v~~l~~ll~ 470 (529)
T 1jdh_A 393 LREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD--VHNRIVIRGLNTIPLFVQLLY 470 (529)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTS--HHHHHHHHHTTCHHHHHHGGG
T ss_pred HHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcC--chHHHHHhccCCccHHHHHHc
Confidence 11 3577888888888888888888877765 2221 1111111 367899999999
Q ss_pred CCChHHHHHHHHHHHHHHHhhhhccccch--HHHHHHHHHhhcCCChhHHHHHHHHHHHH
Q 004960 430 DESDEVKEKSYYALAAFCEDMGEEILPFL--DPLMGKLLAALENSPRNLQETCMSAIGSV 487 (721)
Q Consensus 430 ~~~~~v~~~a~~al~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~v~~~~l~~l~~l 487 (721)
++++.++..++++|.++...- .....+ .+.++.|..++.+.++.++..+..++..+
T Consensus 471 ~~~~~v~~~a~~~l~~l~~~~--~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 471 SPIENIQRVAAGVLCELAQDK--EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp CSCHHHHHHHHHHHHHHTTSH--HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhcCH--HHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 999999999999999986331 111111 24567788889999999999999988765
No 45
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.75 E-value=6.1e-16 Score=166.34 Aligned_cols=469 Identities=12% Similarity=0.059 Sum_probs=296.3
Q ss_pred CCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhcCCCHHH--HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccc
Q 004960 34 PQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQL--KQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAV 111 (721)
Q Consensus 34 p~~~~~l~~il~~~~~~~vr~~a~~~l~~~i~~~w~~~~~~~--~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~ 111 (721)
.+.++.|...+. +.++.+|..|+..|.+.....-.. ... .......+++.|.+.+++.++..++.++..++....
T Consensus 16 ~~~i~~Lv~lL~-~~~~~v~~~A~~~L~~l~~~~~~~--~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~ 92 (529)
T 1jdh_A 16 TRAIPELTKLLN-DEDQVVVNKAAVMVHQLSKKEASR--HAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE 92 (529)
T ss_dssp -CHHHHHHHHHT-CSCHHHHHHHHHHHHHHHTSHHHH--HHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHH
T ss_pred HhhHHHHHHHhC-CCCHHHHHHHHHHHHHHHcCCccH--HHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCch
Confidence 467888888876 468999999999998876432000 000 123455677777765689999999999999875421
Q ss_pred CCC--CCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhccccc-HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhh
Q 004960 112 PAG--EWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPH-FADMQALLLKCLQDETSNRVRIAALKAIGSFL 188 (721)
Q Consensus 112 ~~~--~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~-~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~ 188 (721)
+.. .-...+|.+.+.++++++..+..++.++.+++...++..... -...++.+.+.+.+ +++.++..++.++..+.
T Consensus 93 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~-~~~~~~~~~~~~L~~la 171 (529)
T 1jdh_A 93 GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFLAITTDCLQILA 171 (529)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGC-CCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhc-CCHHHHHHHHHHHHHHH
Confidence 110 013579999999999999999999999999987643321111 25678999999998 89999999999998887
Q ss_pred hhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcccchhhhH-HHHHHHHHHhhcCCCCChHHHH
Q 004960 189 EFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSV-KSIVHFSLEVSSSHNLEPNTRH 267 (721)
Q Consensus 189 ~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~r~ 267 (721)
...++......-...++.++..+.. ......+..+..++..+..... .-...+ ...++.+...+.+. +..++.
T Consensus 172 ~~~~~~~~~i~~~~~i~~L~~ll~~---~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~g~~~~L~~ll~~~--~~~~~~ 245 (529)
T 1jdh_A 172 YGNQESKLIILASGGPQALVNIMRT---YTYEKLLWTTSRVLKVLSVCSS-NKPAIVEAGGMQALGLHLTDP--SQRLVQ 245 (529)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHHHH---CCCHHHHHHHHHHHHHHTTSTT-HHHHHHHTTHHHHHHTTTTSS--CHHHHH
T ss_pred hCCHHHHHHHHHCCCHHHHHHHHHh---CChHHHHHHHHHHHHHHhcCcc-cHHHHHHCCCHHHHHHHHhCC--ChHHHH
Confidence 6322111111113456777764432 2344556667888888775432 111111 24566666666655 688999
Q ss_pred HHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcC---cccc-HhHHHHHH
Q 004960 268 QAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA---KHVF-PPVFEFAS 343 (721)
Q Consensus 268 ~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~---~~~~-~~i~~~l~ 343 (721)
.+++++..++...+. ......+++.++.++...+ ...+..+..++..++...+ ..+. ...++.+.
T Consensus 246 ~a~~~L~~l~~~~~~----~~~~~~~i~~L~~ll~~~~-------~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~ 314 (529)
T 1jdh_A 246 NCLWTLRNLSDAATK----QEGMEGLLGTLVQLLGSDD-------INVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALV 314 (529)
T ss_dssp HHHHHHHHHHTTCTT----CSCCHHHHHHHHHHTTCSC-------HHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHhcCChh----hHHHHhHHHHHHHHHcCCC-------HHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHH
Confidence 999999999865432 1335677888888875432 5677888888888865322 1111 12355555
Q ss_pred hhhcC--CChhhHhHHHHHHHHHhhccHH--HHHHh--HHHHHHHHHhhcCCCC-HhHHHHHHHHHHHHHhhhhHHHHHh
Q 004960 344 VSCQN--ASPKYREAAVTAIGIISEGCAE--WMKEK--LESVLHIVLGALRDPE-QFVRGAASFALGQFAEYLQPEIVSH 416 (721)
Q Consensus 344 ~~l~~--~~~~~r~~al~~l~~i~~~~~~--~~~~~--l~~i~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~~ 416 (721)
+.+.+ +++..+..++.++++++.+.+. ..... -...++.+.+.+.+++ +.+|..+++++++++..-... ...
T Consensus 315 ~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~-~~~ 393 (529)
T 1jdh_A 315 RTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APL 393 (529)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH-HHH
T ss_pred HHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhh-HHH
Confidence 55543 4588999999999999876432 11111 1245788999999876 699999999999999754322 222
Q ss_pred h-hhHHHHHHHhccCCChHHHHHHHHHHHH----------------------HHHhhh--hccccchHHHHHHHHHhhcC
Q 004960 417 Y-ESVLPCILNALEDESDEVKEKSYYALAA----------------------FCEDMG--EEILPFLDPLMGKLLAALEN 471 (721)
Q Consensus 417 ~-~~~l~~l~~~l~~~~~~v~~~a~~al~~----------------------l~~~~~--~~~~~~~~~i~~~l~~~l~~ 471 (721)
. .+++|.+++.+.+.++.+|..++|++.+ ++.... ..+. -...++.+..++.+
T Consensus 394 ~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~--~~~~v~~l~~ll~~ 471 (529)
T 1jdh_A 394 REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIR--GLNTIPLFVQLLYS 471 (529)
T ss_dssp HHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHH--HTTCHHHHHHGGGC
T ss_pred HHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHh--ccCCccHHHHHHcC
Confidence 2 4789999999988777888888877765 111100 0000 01456788889999
Q ss_pred CChhHHHHHHHHHHHHHHHhhhcchhhHH--HHHHHHHHHHhccCchhhhhHHHHHHHHHHH
Q 004960 472 SPRNLQETCMSAIGSVAAAAEQAFIPYAE--RVLELLKIFMVLTNDEDLRSRARATELLGLV 531 (721)
Q Consensus 472 ~~~~v~~~~l~~l~~l~~~~~~~~~~~~~--~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l 531 (721)
++..++..+..+++.+... ......+. ..++.|..++. +++..++..+..++..+
T Consensus 472 ~~~~v~~~a~~~l~~l~~~--~~~~~~i~~~~~~~~L~~l~~---~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 472 PIENIQRVAAGVLCELAQD--KEAAEAIEAEGATAPLTELLH---SRNEGVATYAAAVLFRM 528 (529)
T ss_dssp SCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTCHHHHHHGGG---CSSHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcC--HHHHHHHHHcCChHHHHHHhc---CCCHHHHHHHHHHHHhc
Confidence 9999999999998887632 11111111 13344555443 34455666777666554
No 46
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.73 E-value=2.4e-15 Score=160.34 Aligned_cols=399 Identities=11% Similarity=0.103 Sum_probs=268.4
Q ss_pred cHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhh-cCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHccccCC-
Q 004960 36 VVPALVQHLRTAKTPNVRQLAAVLLRKKITGHW-AKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPA- 113 (721)
Q Consensus 36 ~~~~l~~il~~~~~~~vr~~a~~~l~~~i~~~w-~~~~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~- 113 (721)
.++.+++-+. ++++..+..|...+++.+...- ..+..-....+...|++.|....++.++..++.++..++......
T Consensus 77 ~l~~lv~~l~-s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~ 155 (529)
T 3tpo_A 77 SVEDIVKGIN-SNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 155 (529)
T ss_dssp CHHHHHHHHT-SSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHhc-CCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 4566666654 4578899999999998875421 111122333566788888876677999999999999998643210
Q ss_pred --CCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhccccc-HHHHHHHHHHhhCCCC----CHHHHHHHHHHHHH
Q 004960 114 --GEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPH-FADMQALLLKCLQDET----SNRVRIAALKAIGS 186 (721)
Q Consensus 114 --~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~-~~~l~~~l~~~l~~~~----~~~vr~~a~~~l~~ 186 (721)
-.-...+|.|..++.+++...++.|+.+|++++...++.-... -...++.+...+.+.. ...+...+++++..
T Consensus 156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n 235 (529)
T 3tpo_A 156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 235 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHH
Confidence 0123579999999999999999999999999986543211111 1235677778887522 23456678888888
Q ss_pred hhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcccchhhhH-HHHHHHHHHhhcCCCCChHH
Q 004960 187 FLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSV-KSIVHFSLEVSSSHNLEPNT 265 (721)
Q Consensus 187 l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~ 265 (721)
++...............+|.++. .+.+++++++..++++|..+...........+ ..+++.+...+.+. +..+
T Consensus 236 l~~~~~~~~~~~~~~~~lp~L~~----LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~--~~~v 309 (529)
T 3tpo_A 236 LCRNKNPAPPLDAVEQILPTLVR----LLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT--ELPI 309 (529)
T ss_dssp HHCCCTTCCCHHHHHHHHHHHHH----HTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCS--CHHH
T ss_pred HHhcccchhhHHHHhhHHHHHHH----HhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCC--ChhH
Confidence 87755333333334556666655 67888999999999999999876543322211 12344444455444 5677
Q ss_pred HHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcCccccHhHHHHHHhh
Q 004960 266 RHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVS 345 (721)
Q Consensus 266 r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~i~~~l~~~ 345 (721)
+..++.++..++...+... ..+ .. ...++.+...
T Consensus 310 ~~~a~~aL~nl~~~~~~~~------~~i---------------------------------~~-------~g~l~~L~~L 343 (529)
T 3tpo_A 310 VTPALRAIGNIVTGTDEQT------QKV---------------------------------ID-------AGALAVFPSL 343 (529)
T ss_dssp HHHHHHHHHHHTTSCHHHH------HHH---------------------------------HH-------TTGGGGHHHH
T ss_pred HHHHHHHHHHHHccchHHH------HHH---------------------------------hh-------cccHHHHHHH
Confidence 7777777776653211100 000 00 1133445556
Q ss_pred hcCCChhhHhHHHHHHHHHhhccHHHHHHhH-HHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhh--hhHHH
Q 004960 346 CQNASPKYREAAVTAIGIISEGCAEWMKEKL-ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY--ESVLP 422 (721)
Q Consensus 346 l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~~l~ 422 (721)
+.+++...|..|+++++.++.+......... ..++|.++..+.+.++.+|..|+|+|++++....++...++ .++++
T Consensus 344 L~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~ 423 (529)
T 3tpo_A 344 LTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIE 423 (529)
T ss_dssp TTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHH
T ss_pred HcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHH
Confidence 7788889999999999999987665444333 35788999999999999999999999999987655444443 57899
Q ss_pred HHHHhccCCChHHHHHHHHHHHHHHHhhhhc--ccc---chH--HHHHHHHHhhcCCChhHHHHHHHHHHHH
Q 004960 423 CILNALEDESDEVKEKSYYALAAFCEDMGEE--ILP---FLD--PLMGKLLAALENSPRNLQETCMSAIGSV 487 (721)
Q Consensus 423 ~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~--~~~---~~~--~i~~~l~~~l~~~~~~v~~~~l~~l~~l 487 (721)
.|++.|.++++.++..++++|.+++...+.. ..+ +++ +.++.|..+..+.+.++++.+...|...
T Consensus 424 ~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 495 (529)
T 3tpo_A 424 PLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 495 (529)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999998765321 111 122 2345566666677788888877665443
No 47
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.73 E-value=1.4e-14 Score=156.68 Aligned_cols=475 Identities=12% Similarity=0.092 Sum_probs=306.6
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHhc-CCCcHHHHHHHHh---cCCChhHHHHHHHHHHHhhhhhhcCCCHHHHHHHH
Q 004960 5 LELLLIQFLMPDNDARRQAEDQIKRLAK-DPQVVPALVQHLR---TAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVK 80 (721)
Q Consensus 5 l~~ll~~~~s~d~~~r~~A~~~L~~~~~-~p~~~~~l~~il~---~~~~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i~ 80 (721)
.-++++.+.|+|-+.|+-+.-++..+.. +|+......+.+. ++.++.+|..|+..+.+.. +++..+.+.
T Consensus 72 ~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~-------~~~~~~~l~ 144 (618)
T 1w63_A 72 QLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG-------SSEMCRDLA 144 (618)
T ss_dssp HHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC-------CHHHHHHHH
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC-------CHHHHHHHH
Confidence 4567777789999999999999987765 5665444444443 3568999999998888764 345666777
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhh---cccccH
Q 004960 81 QSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQ---TFRPHF 157 (721)
Q Consensus 81 ~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~---~~~~~~ 157 (721)
..+...+. ++++.||+.++.++..+.+.. |. ..+.+++.+.+++.+.++.++..|+.++..+++..++ .+...+
T Consensus 145 ~~l~~~L~-~~~~~VRk~A~~al~~l~~~~-p~-~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v 221 (618)
T 1w63_A 145 GEVEKLLK-TSNSYLRKKAALCAVHVIRKV-PE-LMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLV 221 (618)
T ss_dssp HHHHHHHH-SCCHHHHHHHHHHHHHHHHHC-GG-GGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTH
T ss_pred HHHHHHHc-CCCHHHHHHHHHHHHHHHHHC-hH-HHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 77778887 489999999999999999754 32 4567888888999999999999999999999876543 233445
Q ss_pred HHHHHHHHHhhCC----------CCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHH--HhhcCCHHHHHH
Q 004960 158 ADMQALLLKCLQD----------ETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQ--CLASGEEDVAVI 225 (721)
Q Consensus 158 ~~l~~~l~~~l~~----------~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~--~l~~~~~~~~~~ 225 (721)
+.++..+.+.... ..++-.+...+++++.+.... +.. ...+.+.+...+.. ..++.+..+...
T Consensus 222 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~--~~~---~~~~~~~L~~l~~~~~~~~~~~~aV~~e 296 (618)
T 1w63_A 222 PQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRND--DDS---SEAMNDILAQVATNTETSKNVGNAILYE 296 (618)
T ss_dssp HHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTC--HHH---HHTTHHHHHHHHHTSCCSSTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCC--HHH---HHHHHHHHHHHHhccccccchHHHHHHH
Confidence 5555555544321 146778888888888877642 211 12222222221111 011123467777
Q ss_pred HHHHHHHHhcCcccchhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCC
Q 004960 226 AFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESN 305 (721)
Q Consensus 226 a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~ 305 (721)
|++++..+.. .+. .....++.+...+.++ ++++|+.|+..+..++...|..+.+ ....++..+.+.
T Consensus 297 a~~~i~~l~~-~~~----l~~~a~~~L~~~L~~~--d~~vr~~aL~~L~~i~~~~p~~~~~------~~~~i~~~l~d~- 362 (618)
T 1w63_A 297 TVLTIMDIKS-ESG----LRVLAINILGRFLLNN--DKNIRYVALTSLLKTVQTDHNAVQR------HRSTIVDCLKDL- 362 (618)
T ss_dssp HHHHHHHSCC-CHH----HHHHHHHHHHHHHTCS--STTTHHHHHHHHHHHHHHHHHHHGG------GHHHHHHGGGSS-
T ss_pred HHHHHHhcCC-CHH----HHHHHHHHHHHHHhCC--CCchHHHHHHHHHHHHhhCHHHHHH------HHHHHHHHccCC-
Confidence 8888777533 121 1223344444445554 5689999999999999877765432 233455555432
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHHcCccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHh
Q 004960 306 EAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLG 385 (721)
Q Consensus 306 ~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~ 385 (721)
+.++|..+.+++..+++. ..+..+++.+..++.+.+...|..++.+++.++...+.. ....++.+++
T Consensus 363 ------d~~Ir~~alelL~~l~~~---~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~----~~~~v~~ll~ 429 (618)
T 1w63_A 363 ------DVSIKRRAMELSFALVNG---NNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPS----KRWHIDTIMR 429 (618)
T ss_dssp ------CHHHHHHHHHHHHHHCCS---SSTHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCC----HHHHHHHHHH
T ss_pred ------ChhHHHHHHHHHHHHccc---ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCcc----HHHHHHHHHH
Confidence 367888888877777653 335667777777777788999999999999999865432 3344566666
Q ss_pred hcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccC--CChHHHHHHHHHHHHHHHhhhhc----ccc---
Q 004960 386 ALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALED--ESDEVKEKSYYALAAFCEDMGEE----ILP--- 456 (721)
Q Consensus 386 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~--~~~~v~~~a~~al~~l~~~~~~~----~~~--- 456 (721)
.+++....++..+...+..+....+. .. ...++.+.+.+.+ ....+...++|.++.+....... ..|
T Consensus 430 lL~~~~~~v~~~~~~~l~~ii~~~p~-l~---~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~ 505 (618)
T 1w63_A 430 VLTTAGSYVRDDAVPNLIQLITNSVE-MH---AYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQV 505 (618)
T ss_dssp HHHHTGGGSCSSHHHHHHHHHHHSCS-TH---HHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCC
T ss_pred HHHhccchhHHHHHHHHHHHHhcChh-HH---HHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCC
Confidence 66666666777777777777765542 11 2344445555443 22344557999999998766321 001
Q ss_pred chHHHHHHHHHhhc--CCChhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHH
Q 004960 457 FLDPLMGKLLAALE--NSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVA 532 (721)
Q Consensus 457 ~~~~i~~~l~~~l~--~~~~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~ 532 (721)
.-..++..+..++. ..+..+|..++.++..+....++ ..+.+...|.... .+.+.++|.+|...+..+.
T Consensus 506 ~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~----~~~~l~~~L~~~~---~~~d~evrdRA~~y~~ll~ 576 (618)
T 1w63_A 506 TEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTC----TVNRIKKVVSIYG---SSIDVELQQRAVEYNALFK 576 (618)
T ss_dssp CHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSS----CHHHHHHHHHHHT---TCSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcc----hHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHc
Confidence 11234444444443 45788999999999888776543 2333444444332 3456678889998877765
No 48
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.73 E-value=1.5e-12 Score=147.05 Aligned_cols=627 Identities=10% Similarity=0.077 Sum_probs=360.1
Q ss_pred HHHHHHHHHHHHHh------cCCCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhh----cCCCHHHHHHHHH------
Q 004960 18 DARRQAEDQIKRLA------KDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHW----AKLSPQLKQLVKQ------ 81 (721)
Q Consensus 18 ~~r~~A~~~L~~~~------~~p~~~~~l~~il~~~~~~~vr~~a~~~l~~~i~~~w----~~~~~~~~~~i~~------ 81 (721)
-.+++..+.+..+. ..|+++..++..+.+ ++.....+...|+.....-. ..++..-+..+++
T Consensus 115 ~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~~--~~~~~~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~ 192 (1023)
T 4hat_C 115 NLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSS--SVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEF 192 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTTT--CHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHH
Confidence 34455555554432 247788888887643 34556666666665544321 2233333333332
Q ss_pred -----HHHHHHhhcCCHHHHHHHHHHHHHHHccccCCC--CCcchHHHHH-HhccCCcHHHHHHHHHHHHHhhhh-h-hh
Q 004960 82 -----SLIESITLEHSAPVRRASANVVSIIAKYAVPAG--EWPDLLPFLF-QFSQSEQEEHREVALILFSSLTET-I-GQ 151 (721)
Q Consensus 82 -----~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~--~~~~ll~~l~-~~l~~~~~~~~~~al~~l~~i~~~-~-~~ 151 (721)
.+.+.+.+..+..+...+.++++...+. .|-+ .-+++++.++ ..+. ++..+..|+.|+..++.. . ++
T Consensus 193 ~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~W-I~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~ 269 (1023)
T 4hat_C 193 EQIFKLCFQVLEQGASSSLIVATLESLLRYLHW-IPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQD 269 (1023)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTT-SCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSS
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh-CCHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCc
Confidence 3334444445666777777777776642 1111 1256889888 8775 467899999999999862 1 11
Q ss_pred --ccc----ccHHHHHHHH-HHh----------h--CCCCCHHHHHHHHHHHHHhhhhcCChhh-HHHHHhhHHHHHHHH
Q 004960 152 --TFR----PHFADMQALL-LKC----------L--QDETSNRVRIAALKAIGSFLEFTNDGAE-VVKFREFIPSILNVS 211 (721)
Q Consensus 152 --~~~----~~~~~l~~~l-~~~----------l--~~~~~~~vr~~a~~~l~~l~~~~~~~~~-~~~~~~~l~~ll~~l 211 (721)
.+. ..+..+++.+ ... + .+..+.+....-+..+..+.+....-.. ...+.+++...++.+
T Consensus 270 ~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~L 349 (1023)
T 4hat_C 270 NDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYL 349 (1023)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHH
Confidence 111 1222333322 111 1 1112344433344444333222111000 001234444445566
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHhcCc------ccchhhhHHHHHHHHHHhhcCCC--------C-----------ChHHH
Q 004960 212 RQCLASGEEDVAVIAFEIFDELIESP------APLLGDSVKSIVHFSLEVSSSHN--------L-----------EPNTR 266 (721)
Q Consensus 212 ~~~l~~~~~~~~~~a~~~l~~l~~~~------~~~~~~~~~~l~~~~~~~~~~~~--------~-----------~~~~r 266 (721)
..+...++.++...++..|..+.+.. ...+.+++..++..++..+..++ . ++...
T Consensus 350 l~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~ 429 (1023)
T 4hat_C 350 IQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQL 429 (1023)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHH
T ss_pred HHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHH
Confidence 55666678899999999999887632 23567778888888876554332 0 11122
Q ss_pred HHHH-HHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcCc----cccHhHHHH
Q 004960 267 HQAI-QIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAK----HVFPPVFEF 341 (721)
Q Consensus 267 ~~a~-~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~----~~~~~i~~~ 341 (721)
...+ ++|..++...+.. .++.+++.+-..+... +.+|..+.++..+++.++....+ ..++.+++.
T Consensus 430 f~~~Rd~L~~l~~l~~~~-----~~~~~~~~l~~~l~~~-----~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~ 499 (1023)
T 4hat_C 430 YKSEREVLVYLTHLNVID-----TEEIMISKLARQIDGS-----EWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKD 499 (1023)
T ss_dssp HHHHHHHHHHHHHHCHHH-----HHHHHHHHHHHHHSST-----TCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHH-----HHHHHHHHHHHHhcCC-----CCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Confidence 2222 4444443322211 1223333333333321 13599999999999998876652 356777777
Q ss_pred HHhhhcC-----CChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHH--
Q 004960 342 ASVSCQN-----ASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIV-- 414 (721)
Q Consensus 342 l~~~l~~-----~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-- 414 (721)
+.....+ +....|..+++++|...+..... ..+++.++..+++.+.++++.|+.+|++++..+++.+...+.
T Consensus 500 Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~-~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~ 578 (1023)
T 4hat_C 500 LLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAH-WNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQ 578 (1023)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHC-HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSC
T ss_pred HHHhhhccccCcchHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 7766542 33445667889999888765432 346889999999999999999999999999999999887664
Q ss_pred ------HhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhc--cccchHHHHHHHHHhhcC--------C----C-
Q 004960 415 ------SHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEE--ILPFLDPLMGKLLAALEN--------S----P- 473 (721)
Q Consensus 415 ------~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~--~~~~~~~i~~~l~~~l~~--------~----~- 473 (721)
+|+++++..+.+.+..-+..-+..+..+++.+++..+.. ...+++.+++.+...++. + +
T Consensus 579 ~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~ 658 (1023)
T 4hat_C 579 QPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDS 658 (1023)
T ss_dssp CTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCH
T ss_pred CCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCH
Confidence 478888888888777666777789999999999988632 233554444443333221 1 1
Q ss_pred --hhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHhccCc----------------hh-h---hhHHHHHH-----
Q 004960 474 --RNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTND----------------ED-L---RSRARATE----- 526 (721)
Q Consensus 474 --~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~----------------~~-~---~~~~~~~~----- 526 (721)
...-..++++++.++...|..|.|++..+++.+.+..+..+. +. . .+|...++
T Consensus 659 ~~~~~l~~il~~~~~v~~~lg~~f~~~~~~i~~~~l~~y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~ 738 (1023)
T 4hat_C 659 ETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETY 738 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHH
Confidence 122346788888999999999999998888877654332100 00 0 01111222
Q ss_pred ----------------------------------------HHHHHHHhhchhhccCChHHHHHHHH----hccCC---CC
Q 004960 527 ----------------------------------------LLGLVAESVGRARMEPILPPFVEAAI----SGFGL---EF 559 (721)
Q Consensus 527 ----------------------------------------~l~~l~~~~~~~~~~~~~~~i~~~l~----~~l~~---~~ 559 (721)
+++.+...+|. .+.+.++.+++.+. ..+++ +.
T Consensus 739 i~~~~~~~~~~~~~~~~l~~~vl~dY~~~~~~~r~~~vL~l~s~iv~~~~~-~~~~~~~~il~~vf~~Tl~mi~~~~~~~ 817 (1023)
T 4hat_C 739 ISKARNLDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGH-MIPQGVILILQSVFECTLDMINKDFTEY 817 (1023)
T ss_dssp HHHCSCHHHHHHHTHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHGG-GCHHHHHHHHHHHHHHHHHHHSSCSSSS
T ss_pred HhcCCCHHHHHHHhHHHHHHHHHHHHHhCChhhccHHHHHHHHHHHHHHHH-hhhhhhHHHHHHHHHHHHHHHhcccccC
Confidence 22222222221 23344455555543 23332 47
Q ss_pred hhhHHHHHHHHHHHHHHcccCcccc----hhhhHHHHHhhccCCCCCccCCCCCccccccCCCCCCCCchhhhhccccce
Q 004960 560 SELREYTHGFFSNIAGVLEDGFAQY----LPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNI 635 (721)
Q Consensus 560 ~~~~~~~~~~l~~l~~~~~~~~~~~----l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (721)
|+.|...+..+.++.+.....|... +..++..++-+++.
T Consensus 818 Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~~~~~~~~a~~h------------------------------------- 860 (1023)
T 4hat_C 818 PEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKH------------------------------------- 860 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHCTHHHHTSCHHHHHHHHHHHHHHHTC-------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHChHHHHcCCHHHHHHHHHHHHHHcCC-------------------------------------
Confidence 8888888888888888776654332 23333333333322
Q ss_pred eeecchhhhHHHHHHHHHHHHHHccc----c-----ccchHHHHHHHHHhcccC-CChhHHHHHHHHHHHHHHHHHH
Q 004960 636 SVRTGVLDEKAAATQALGLFALHTKS----S-----YAPFLEESLKILVRHASY-FHEDVRYQAVFALKNILTAAHA 702 (721)
Q Consensus 636 ~~~~~~~~~k~~a~~~l~~~~~~~~~----~-----~~~~~~~~~~~l~~~~~~-~~~~vr~~a~~~l~~l~~~~~~ 702 (721)
+..+.-..+++.+.++...+.. . +..|+-.++..+...+.| .+...-+.-+..|..++..+..
T Consensus 861 ----~~r~~~~~~l~~~~~ll~~~~~~~~~~~~~~f~~~~~~~~~~~~~~v~td~~h~~~f~~~~~~l~~l~~~~~~ 933 (1023)
T 4hat_C 861 ----NNRDVEVNGLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETFFVLTDSDHKSGFSKQALLLMKLISLVYD 933 (1023)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHSSSCGGGHHHHHHHHHHHHHHHHT
T ss_pred ----CchHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHHHHHHc
Confidence 2223446677777777654432 1 235666666666665544 4566666677777777776554
No 49
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.72 E-value=3.7e-17 Score=155.11 Aligned_cols=204 Identities=12% Similarity=0.142 Sum_probs=172.5
Q ss_pred ccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcC-CCCHhHHHHHHHHHHHHHhhhhHH
Q 004960 334 VFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALR-DPEQFVRGAASFALGQFAEYLQPE 412 (721)
Q Consensus 334 ~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~ 412 (721)
++..+-+.+.+.+.+.+|..|.+|+..+..+++++++.....+.++++.+...+. |+++.||..|+.+++.++..+++.
T Consensus 12 i~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~ 91 (242)
T 2qk2_A 12 ILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKR 91 (242)
T ss_dssp CGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGG
T ss_pred ccccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 4445555566778899999999999999999987543222345688899999994 999999999999999999999888
Q ss_pred HHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhh
Q 004960 413 IVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAE 492 (721)
Q Consensus 413 ~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~ 492 (721)
+.+|.+.++|.+++.+.|++..||..++.++..++... .++.+++.+...+.+.++.+|..++..++.++...+
T Consensus 92 ~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~------~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~ 165 (242)
T 2qk2_A 92 FSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAST------SLEAQQESIVESLSNKNPSVKSETALFIARALTRTQ 165 (242)
T ss_dssp GHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS------CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC------CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 88899999999999999999999999999999998754 257888999999999999999999999999887764
Q ss_pred -h-cchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhccCChHH
Q 004960 493 -Q-AFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPP 546 (721)
Q Consensus 493 -~-~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 546 (721)
+ .+.+|++.++|.+...++ +....+|..+.++++.++..+|.+.+.++++.
T Consensus 166 ~~~~~~~~l~~l~p~l~~~l~---D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~ 218 (242)
T 2qk2_A 166 PTALNKKLLKLLTTSLVKTLN---EPDPTVRDSSAEALGTLIKLMGDKAVTPLLAD 218 (242)
T ss_dssp GGGCCHHHHHHHHHHHHHHHT---SSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTT
T ss_pred CCCccHHHHHHHHHHHHHHhc---CCChHHHHHHHHHHHHHHHHcCHHHHHHHHHh
Confidence 3 467899999999999984 45567899999999999999997666666543
No 50
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.72 E-value=9.1e-15 Score=154.79 Aligned_cols=386 Identities=11% Similarity=0.149 Sum_probs=263.9
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHccccCCCCC-----cchHHHHHHhccC-CcHHHHHHHHHHHHHhhhhhhhcccc
Q 004960 82 SLIESITLEHSAPVRRASANVVSIIAKYAVPAGEW-----PDLLPFLFQFSQS-EQEEHREVALILFSSLTETIGQTFRP 155 (721)
Q Consensus 82 ~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~-----~~ll~~l~~~l~~-~~~~~~~~al~~l~~i~~~~~~~~~~ 155 (721)
.+++.+.+ .+...+..++..+..+.+.+... .. ...+|.|.+++++ +++..+..|..+|++++...++....
T Consensus 61 ~~v~~l~s-~d~~~q~~a~~~~rklls~e~~p-pi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~ 138 (510)
T 3ul1_B 61 DIVKGINS-NNLESQLQATQAARKLLSREKQP-PIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 138 (510)
T ss_dssp HHHHHHTS-SCHHHHHHHHHHHHHHHTCSSCC-CHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCc-hHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 45667776 78999999999998876543210 11 3469999999974 45788889999999998655443222
Q ss_pred cH-HHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCC-----HHHHHHHHHH
Q 004960 156 HF-ADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGE-----EDVAVIAFEI 229 (721)
Q Consensus 156 ~~-~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~-----~~~~~~a~~~ 229 (721)
.+ ...+|.+.++|.+ ++..+|..|+++|++++...+.......-...++.++.. +...+ ......+.++
T Consensus 139 vv~~GaIp~Lv~lL~s-~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~l----L~~~~~~~~~~~~~~~a~~~ 213 (510)
T 3ul1_B 139 VVDGGAIPAFISLLAS-PHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL----LAVPDLSTLACGYLRNLTWT 213 (510)
T ss_dssp HHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHH----TCSSCGGGSCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHH----HHhccchhhhHHHHHHHHHH
Confidence 22 2478999999998 999999999999999987543222222224567777763 43332 3456778888
Q ss_pred HHHHhcCcccc-hhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhh---hhhcCChHHHHHHHHhhhccCC
Q 004960 230 FDELIESPAPL-LGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNS---LKKHKLVIPILQVMCPLLAESN 305 (721)
Q Consensus 230 l~~l~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~~~~~~il~~l~~~l~~~~ 305 (721)
+..+.....+. -...+..+++.+...+.++ +++++..+++.+..++...... +.... +++.++.++...+
T Consensus 214 L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~--~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g----~i~~Lv~lL~~~~ 287 (510)
T 3ul1_B 214 LSNLCRNKNPAPPLDAVEQILPTLVRLLHHN--DPEVLADSCWAISYLTDGPNERIEMVVKKG----VVPQLVKLLGATE 287 (510)
T ss_dssp HHHHHCCCSSCCCHHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHTSSCHHHHHHHHTTT----CHHHHHHHHTCSC
T ss_pred HHHHhhcccchhHHHHHHhHHHHHHHHHhcC--CHHHHHHHHHHHHHHhhchhhhHHHHHhcc----cchhhhhhhcCCC
Confidence 88888754322 2233456667677676665 7889999999999888543322 11222 3444555665543
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHHcCcc---cc-HhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhH-HHHH
Q 004960 306 EAGEDDDLAPDRAAAEVIDTMALNLAKH---VF-PPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKL-ESVL 380 (721)
Q Consensus 306 ~~~~~~~~~~~~~a~~~l~~l~~~~~~~---~~-~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l-~~i~ 380 (721)
...+..+..++..++...... ++ ...++.+...+.+++...|..+++++++++.+......... ..++
T Consensus 288 -------~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i 360 (510)
T 3ul1_B 288 -------LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 360 (510)
T ss_dssp -------HHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHH
T ss_pred -------hhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCH
Confidence 456667777777665432211 11 23455566677888999999999999999987665444332 3688
Q ss_pred HHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhh--hhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhh-----c
Q 004960 381 HIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY--ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGE-----E 453 (721)
Q Consensus 381 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~-----~ 453 (721)
+.++..+.+.++.+|..|+|+|++++.....+...++ .++++.|++.|.+++++++..++++|.+++...+. .
T Consensus 361 ~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~ 440 (510)
T 3ul1_B 361 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEK 440 (510)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHH
Confidence 9999999999999999999999999987655444443 57899999999999999999999999999876532 1
Q ss_pred cccchH--HHHHHHHHhhcCCChhHHHHHHHHHHHH
Q 004960 454 ILPFLD--PLMGKLLAALENSPRNLQETCMSAIGSV 487 (721)
Q Consensus 454 ~~~~~~--~i~~~l~~~l~~~~~~v~~~~l~~l~~l 487 (721)
+...++ +.++.|..+..+.+.++++.+...|...
T Consensus 441 ~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 476 (510)
T 3ul1_B 441 LSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 476 (510)
T ss_dssp HHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 111222 3455666666677777877776655433
No 51
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.69 E-value=9.7e-14 Score=149.33 Aligned_cols=485 Identities=13% Similarity=0.125 Sum_probs=307.2
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHhc-CCCcHHHHHHHHhc---CCChhHHHHHHHHHHHhhhhhhcCCCHHHHHHHH
Q 004960 5 LELLLIQFLMPDNDARRQAEDQIKRLAK-DPQVVPALVQHLRT---AKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVK 80 (721)
Q Consensus 5 l~~ll~~~~s~d~~~r~~A~~~L~~~~~-~p~~~~~l~~il~~---~~~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i~ 80 (721)
.-++++.+.|+|-+.|+-+.-++..+.+ +|+.+....+.+.+ ++++.+|-.|...+.+.. .++..+.+.
T Consensus 76 ~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~-------~~e~~~~l~ 148 (621)
T 2vgl_A 76 HMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVG-------SREMAEAFA 148 (621)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHC-------CHHHHHHHT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccC-------CHHHHHHHH
Confidence 3456676778888888888888877665 46655444444442 468888888888777762 466777777
Q ss_pred HHHHHHHh-hcCCHHHHHHHHHHHHHHHccccCCCCCc--chHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccccH
Q 004960 81 QSLIESIT-LEHSAPVRRASANVVSIIAKYAVPAGEWP--DLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHF 157 (721)
Q Consensus 81 ~~ll~~l~-~e~~~~vr~~~~~~l~~i~~~~~~~~~~~--~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~ 157 (721)
..+.+++. .++++.||+.++.++..+.+.. |+ ..+ ++++.+.+++.+.++.++.+|+.++..++...+..+.+.+
T Consensus 149 ~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~-p~-~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~ 226 (621)
T 2vgl_A 149 GEIPKILVAGDTMDSVKQSAALCLLRLYRTS-PD-LVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSV 226 (621)
T ss_dssp THHHHHHHCSSSCHHHHHHHHHHHHHHHHHC-GG-GCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHhC-hh-hcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHH
Confidence 88888883 2689999999999999999854 32 333 7889999999999999999999999999987776666677
Q ss_pred HHHHHHHHHhhCCC-C-----------CHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHH-----HhhcCC-
Q 004960 158 ADMQALLLKCLQDE-T-----------SNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQ-----CLASGE- 219 (721)
Q Consensus 158 ~~l~~~l~~~l~~~-~-----------~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~-----~l~~~~- 219 (721)
+.++..+.+.+... . ++-.+...++.+..+.... ++.....+.+.++.+++.+.. .++..+
T Consensus 227 ~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~-d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~ 305 (621)
T 2vgl_A 227 SLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPE-DPAVRGRLTECLETILNKAQEPPKSKKVQHSNA 305 (621)
T ss_dssp HHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCS-SHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHhhccCcccccccccch
Confidence 77777777766431 1 5667777777777665421 222222233344444432110 011112
Q ss_pred -HHHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHH
Q 004960 220 -EDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMC 298 (721)
Q Consensus 220 -~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~ 298 (721)
..+.-.|.+++..+.. . ...+...+..+...+.+. ++++|+.++..+..++...+.. +.+......++
T Consensus 306 ~~aVl~ea~~~i~~l~~-~----~~~~~~~~~~L~~~L~~~--~~niry~aL~~l~~l~~~~~~~----~~~~~~~~~i~ 374 (621)
T 2vgl_A 306 KNAVLFEAISLIIHHDS-E----PNLLVRACNQLGQFLQHR--ETNLRYLALESMCTLASSEFSH----EAVKTHIETVI 374 (621)
T ss_dssp HHHHHHHHHHHHHHHCC-C----HHHHHHHHHHHHHHSSCS--CHHHHHHHHHHHHHHTTCTTTH----HHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHhcCC-c----HHHHHHHHHHHHHHhcCC--CcchHHHHHHHHHHHHhccCcH----HHHHHHHHHHH
Confidence 2566667777766642 2 233344445555555544 7899999999999888654310 11222333344
Q ss_pred hhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcCccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHH
Q 004960 299 PLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLES 378 (721)
Q Consensus 299 ~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~ 378 (721)
..+.. +++.+.+..+.+.+..+++ +..+..++..+..++.+.+...|..++..++.++...+ +....
T Consensus 375 ~~L~~------d~d~~Ir~~aL~lL~~l~~---~~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~----~~~~~ 441 (621)
T 2vgl_A 375 NALKT------ERDVSVRQRAVDLLYAMCD---RSNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYA----VDYTW 441 (621)
T ss_dssp HHHTT------CCCHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC----SSTHH
T ss_pred HHhcc------CCCHhHHHHHHHHHHHHcC---hhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC----CcHHH
Confidence 44441 1235677776666665553 34566777778777877888899999999999886433 23345
Q ss_pred HHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCC--hHHHHHHHHHHHHHHHhhhhcccc
Q 004960 379 VLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDES--DEVKEKSYYALAAFCEDMGEEILP 456 (721)
Q Consensus 379 i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~--~~v~~~a~~al~~l~~~~~~~~~~ 456 (721)
.+..+++.+.+....+...+...+..+....+. .+. ..+..+++.+.++. ..+...++|.++.+.......-.-
T Consensus 442 ~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~-~~~---~~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~~~~ 517 (621)
T 2vgl_A 442 YVDTILNLIRIAGDYVSEEVWYRVIQIVINRDD-VQG---YAAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGDPRS 517 (621)
T ss_dssp HHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCS-CHH---HHHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSSTTS
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHhCChh-HHH---HHHHHHHHHHcCccchHHHHHHHHHHhcchHHHhcccCCC
Confidence 556666666554445555666666666554432 222 23455666777664 345567789999997766432100
Q ss_pred chHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHH
Q 004960 457 FLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVA 532 (721)
Q Consensus 457 ~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~ 532 (721)
.-..++..+.+.+...+..+|..++.++..+....++ ..+.+...+..... ..+.+.++|.+|.+....+.
T Consensus 518 ~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~----~~~~i~~~l~~~~~-~~~~d~evrdRA~~y~~Ll~ 588 (621)
T 2vgl_A 518 SPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPE----VKATIQDVLRSDSQ-LKNADVELQQRAVEYLRLST 588 (621)
T ss_dssp CHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHSSHHH-HSCSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHChH----HHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHc
Confidence 0124566677677777899999999999988766543 12222222222221 02456678888988877764
No 52
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.66 E-value=2.8e-12 Score=138.02 Aligned_cols=500 Identities=12% Similarity=0.103 Sum_probs=305.6
Q ss_pred ChHHHHHHHHHHHH--HhcCC--CcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHHHHHHhhcC
Q 004960 16 DNDARRQAEDQIKR--LAKDP--QVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEH 91 (721)
Q Consensus 16 d~~~r~~A~~~L~~--~~~~p--~~~~~l~~il~~~~~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i~~~ll~~l~~e~ 91 (721)
|...|+.+-..+-- ....+ .+....++.+ .+++...|+.+-.++...... .++....+.+.+.+.+. ++
T Consensus 51 ~~~~k~~~l~Kli~l~~~G~d~s~~~~~vvkl~-~s~~~~~Krl~YL~l~~~~~~-----~~e~~~L~iN~l~kDl~-~~ 123 (621)
T 2vgl_A 51 DGYSKKKYVCKLLFIFLLGHDIDFGHMEAVNLL-SSNRYTEKQIGYLFISVLVNS-----NSELIRLINNAIKNDLA-SR 123 (621)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCCSCHHHHHHGG-GCSCHHHHHHHHHHHHHSCCC-----CHHHHHHHHHHHHHHHH-SC
T ss_pred CHHHHHHHHHHHHHHHHcCCCCchhHHHHHHHh-cCCCHHHHHHHHHHHHHHccC-----CcHHHHHHHHHHHHhcC-CC
Confidence 45555555555522 22222 2344455544 346788999999888877643 35556666777777777 48
Q ss_pred CHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhc--cCCcHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhC
Q 004960 92 SAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFS--QSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQ 169 (721)
Q Consensus 92 ~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l--~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~l~ 169 (721)
++.+|-.+..+++.|...+ ..+.+++.+.+++ .+.++.+|..|+.++..+.+..++.+.. +.+++.+.++|.
T Consensus 124 n~~ir~lALr~L~~i~~~e----~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~--~~~~~~l~~lL~ 197 (621)
T 2vgl_A 124 NPTFMGLALHCIANVGSRE----MAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPM--GDWTSRVVHLLN 197 (621)
T ss_dssp CHHHHHHHHHHHHHHCCHH----HHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCC--CSCHHHHHHHTT
T ss_pred CHHHHHHHHHHhhccCCHH----HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCc--hhHHHHHHHHhC
Confidence 9999999999999886533 4577899999999 8899999999999999999877765542 366777788888
Q ss_pred CCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcC-------------CHHHHHHHHHHHHHHhcC
Q 004960 170 DETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASG-------------EEDVAVIAFEIFDELIES 236 (721)
Q Consensus 170 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~-------------~~~~~~~a~~~l~~l~~~ 236 (721)
| +++.|+.+|+.++..+....+ ..+..++|.++..+.+.+..+ ++=.+...++.+..+...
T Consensus 198 d-~d~~V~~~a~~~l~~i~~~~~-----~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~ 271 (621)
T 2vgl_A 198 D-QHLGVVTAATSLITTLAQKNP-----EEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPP 271 (621)
T ss_dssp C-SCHHHHHHHHHHHHHHHHHCH-----HHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSC
T ss_pred C-CCccHHHHHHHHHHHHHHhCh-----HHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCC
Confidence 8 999999999999998877532 235678888888777665432 344566666666666543
Q ss_pred cccchhhhHHHHHHHHHHhhcCCC---------CChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCC
Q 004960 237 PAPLLGDSVKSIVHFSLEVSSSHN---------LEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEA 307 (721)
Q Consensus 237 ~~~~~~~~~~~l~~~~~~~~~~~~---------~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~ 307 (721)
..+-....+..++..++..+.+.. ....+...++.++..+. + ..++....+..+...+...+
T Consensus 272 ~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~---~----~~~~~~~~~~~L~~~L~~~~-- 342 (621)
T 2vgl_A 272 EDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD---S----EPNLLVRACNQLGQFLQHRE-- 342 (621)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC---C----CHHHHHHHHHHHHHHSSCSC--
T ss_pred CCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcC---C----cHHHHHHHHHHHHHHhcCCC--
Confidence 222222222233333332221110 01123333333333221 1 11223445555556565332
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHcC-ccccHhHHHHHHhhhc-CCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHh
Q 004960 308 GEDDDLAPDRAAAEVIDTMALNLA-KHVFPPVFEFASVSCQ-NASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLG 385 (721)
Q Consensus 308 ~~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~i~~~l~~~l~-~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~ 385 (721)
.+.+..+...+..++...+ ...+......+...+. +++...|..++..+..++.. .+++.++..+..
T Consensus 343 -----~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~------~Nv~~Iv~eL~~ 411 (621)
T 2vgl_A 343 -----TNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDR------SNAQQIVAEMLS 411 (621)
T ss_dssp -----HHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH------HHHHHHHHHHHH
T ss_pred -----cchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh------hhHHHHHHHHHH
Confidence 5678888888888876554 2344555566666677 88889999999998888753 245677777777
Q ss_pred hcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHH
Q 004960 386 ALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKL 465 (721)
Q Consensus 386 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l 465 (721)
.+.+.+...|..+...++.++..+++.. ...+..+++.+......+...+...+..++...+ .+..| .+..+
T Consensus 412 yl~~~d~~~~~~~v~~I~~la~k~~~~~----~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~-~~~~~---~~~~l 483 (621)
T 2vgl_A 412 YLETADYSIREEIVLKVAILAEKYAVDY----TWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRD-DVQGY---AAKTV 483 (621)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHCSST----HHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGC-SCHHH---HHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhcCCcH----HHHHHHHHHHHHhhcccchHHHHHHHHHHHhCCh-hHHHH---HHHHH
Confidence 7777788999999999999987765433 3444444554444333455556666666665442 23333 45556
Q ss_pred HHhhcCCC--hhHHHHHHHHHHHHHHHhhhc--chhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhcc
Q 004960 466 LAALENSP--RNLQETCMSAIGSVAAAAEQA--FIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARME 541 (721)
Q Consensus 466 ~~~l~~~~--~~v~~~~l~~l~~l~~~~~~~--~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 541 (721)
...+.++. ..+...+.+.+|..+....+. ..| ..++..+.+.+. ..+..+|..++.++..+.... +
T Consensus 484 ~~~l~~~~~~~~li~~~~wilGEy~~~~~~~~~~~p--~~~l~~l~~~~~---~~~~~v~~~~Lta~~Kl~~~~-p---- 553 (621)
T 2vgl_A 484 FEALQAPACHENLVKVGGYILGEFGNLIAGDPRSSP--LIQFNLLHSKFH---LCSVPTRALLLSTYIKFVNLF-P---- 553 (621)
T ss_dssp HHHHTSSSCCHHHHHHHHHHHHHHTHHHHSSTTSCH--HHHHHHHHHHHT---TSCHHHHHHHHHHHHHHHHHC-G----
T ss_pred HHHHcCccchHHHHHHHHHHhcchHHHhcccCCCCH--HHHHHHHHHHhc---cCCHHHHHHHHHHHHHHHHHC-h----
Confidence 66666653 233344447777665554432 111 122333333332 223456667777777665432 2
Q ss_pred CChHHHHHHHHh-ccC--CCChhhHHHHHHHHHHH
Q 004960 542 PILPPFVEAAIS-GFG--LEFSELREYTHGFFSNI 573 (721)
Q Consensus 542 ~~~~~i~~~l~~-~l~--~~~~~~~~~~~~~l~~l 573 (721)
...+.+..+++ ... +.+.++|+.+...+.-+
T Consensus 554 -~~~~~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll 587 (621)
T 2vgl_A 554 -EVKATIQDVLRSDSQLKNADVELQQRAVEYLRLS 587 (621)
T ss_dssp -GGHHHHHHHHSSHHHHSCSSHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 12333344433 333 67999999998876654
No 53
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.59 E-value=1.3e-14 Score=137.43 Aligned_cols=206 Identities=11% Similarity=0.117 Sum_probs=174.2
Q ss_pred HHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhcc-CCChHHHHHHHHHHHHHHHhhhhccccchH
Q 004960 381 HIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALE-DESDEVKEKSYYALAAFCEDMGEEILPFLD 459 (721)
Q Consensus 381 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~-~~~~~v~~~a~~al~~l~~~~~~~~~~~~~ 459 (721)
+.+.+.++|.++..|..|+..|..+.+..+......+..+++.+.+.+. |.+..|+..++.+++.++...+..+.+|..
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~ 97 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYAS 97 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 4566778899999999999999999887432112345788999999995 999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchh-
Q 004960 460 PLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRA- 538 (721)
Q Consensus 460 ~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~- 538 (721)
.+++.+...+.+.+..+|+.+..++..++... .++.++|.+...+.. .++.+|..++.+++.+....+++
T Consensus 98 ~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~------~~~~ll~~l~~~l~~---~~~~vr~~~l~~l~~~l~~~~~~~ 168 (242)
T 2qk2_A 98 ACVPSLLEKFKEKKPNVVTALREAIDAIYAST------SLEAQQESIVESLSN---KNPSVKSETALFIARALTRTQPTA 168 (242)
T ss_dssp HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS------CHHHHHHHHHHHTTC---SCHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC------CHHHHHHHHHHHHcC---CChHHHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999887653 256778887777753 35678889999999987776654
Q ss_pred hccCChHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHcccC-cccchhhhHHHHHhh
Q 004960 539 RMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDG-FAQYLPLVVPLAFSS 595 (721)
Q Consensus 539 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~l~~i~~~ll~~ 595 (721)
.+.++++.+++.+...++++++++|..+..+++.++...|.+ +.+|++.+-+.-...
T Consensus 169 ~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L~~~~~~~ 226 (242)
T 2qk2_A 169 LNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAK 226 (242)
T ss_dssp CCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTSCHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCHHHHHH
Confidence 466788999999999999999999999999999999999986 889998876665443
No 54
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.57 E-value=3.1e-14 Score=133.90 Aligned_cols=204 Identities=11% Similarity=0.083 Sum_probs=172.2
Q ss_pred HHhhcCCCCHhHHHHHHHHHHH-HHhhhhHHH--HHhhhhHHHHHHHhc-cCCChHHHHHHHHHHHHHHHhhh-hccc-c
Q 004960 383 VLGALRDPEQFVRGAASFALGQ-FAEYLQPEI--VSHYESVLPCILNAL-EDESDEVKEKSYYALAAFCEDMG-EEIL-P 456 (721)
Q Consensus 383 l~~~l~d~~~~vr~~a~~~l~~-l~~~~~~~~--~~~~~~~l~~l~~~l-~~~~~~v~~~a~~al~~l~~~~~-~~~~-~ 456 (721)
+.+.+.+.+|.-|.+|+..|+. +.+..+.-. ...+..++..+.+.+ +|.+..|+..|+.+++.+++.++ +.+. +
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 4456689999999999999999 886543211 224567899999999 79999999999999999999998 8899 9
Q ss_pred chHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhcch-hhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhh
Q 004960 457 FLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFI-PYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESV 535 (721)
Q Consensus 457 ~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~~~~-~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~ 535 (721)
|...+++.++..+.+....|++.+..++..++...+.... +|++.+++.+...++.. .+.+|..++.+++.+....
T Consensus 101 y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k---~~~vk~~al~~l~~~~~~~ 177 (249)
T 2qk1_A 101 YVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK---TPQIRMECTQLFNASMKEE 177 (249)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS---SHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC---ChHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999988754332 34889999888887543 4578889999999998776
Q ss_pred ch--hhccCCh-HHHHHHHHhccCCCChhhHHHHHHHHHHHHHHcccC-cccchhhhH
Q 004960 536 GR--ARMEPIL-PPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDG-FAQYLPLVV 589 (721)
Q Consensus 536 ~~--~~~~~~~-~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~l~~i~ 589 (721)
+. +.+.+++ +.+++.+...+.++++++|..++.+++.++...|+. +.||++.+-
T Consensus 178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~Ld 235 (249)
T 2qk1_A 178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLD 235 (249)
T ss_dssp CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHSC
T ss_pred CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHh
Confidence 63 5677888 999999999999999999999999999999999984 888877653
No 55
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.54 E-value=3e-12 Score=133.20 Aligned_cols=357 Identities=10% Similarity=0.076 Sum_probs=230.1
Q ss_pred hHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcc-cccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhH
Q 004960 119 LLPFLFQFSQSEQEEHREVALILFSSLTETIGQTF-RPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEV 197 (721)
Q Consensus 119 ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~-~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 197 (721)
-+|.+.+.++++++..+..|..+++.++...++.- .-.-...+|.+.++|.+ +++.++..|+++|.++....++....
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s-~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS-PNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTS-SCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 37888899999999999999999999885432211 11124568999999998 89999999999999998753222222
Q ss_pred HHHHhhHHHHHHHHHHHhh-cCCHHHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHhhc--------CCC------CC
Q 004960 198 VKFREFIPSILNVSRQCLA-SGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSS--------SHN------LE 262 (721)
Q Consensus 198 ~~~~~~l~~ll~~l~~~l~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~--------~~~------~~ 262 (721)
..-...+|.++. .+. +++++++..+.++|..++... ..-...+...++.+++.+. +.. .+
T Consensus 82 i~~~G~i~~Lv~----lL~~~~~~~~~~~a~~aL~nLa~~~-~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~ 156 (457)
T 1xm9_A 82 TRRQNGIREAVS----LLRRTGNAEIQKQLTGLLWNLSSTD-ELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVD 156 (457)
T ss_dssp HHHTTCHHHHHH----HHTTCCCHHHHHHHHHHHHHHHTSS-STHHHHHHHHHHHHHHHTTHHHHTCC---------CCC
T ss_pred HHHcCCHHHHHH----HHhhCCCHHHHHHHHHHHHHHhcCH-HhHHHHHhccHHHHHHHHhccccccccCccchhccccc
Confidence 222467888888 455 678999999999999999873 2222233355566665551 110 24
Q ss_pred hHHHHHHHHHHHHHHHHhHhh---hhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHH-----------
Q 004960 263 PNTRHQAIQIISWLAKYKYNS---LKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMAL----------- 328 (721)
Q Consensus 263 ~~~r~~a~~~l~~l~~~~~~~---~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~----------- 328 (721)
.++...|.+++.+++.. +.. +... +..++.++.++.....+.+.+ ......+..++..++.
T Consensus 157 ~~v~~~a~~aL~nLs~~-~~~~~~i~~~---~g~i~~Lv~lL~~~~~~~~~~-~~~~e~a~~~L~nLs~~~~~~~~~~~~ 231 (457)
T 1xm9_A 157 PEVFFNATGCLRNLSSA-DAGRQTMRNY---SGLIDSLMAYVQNCVAASRCD-DKSVENCMCVLHNLSYRLDAEVPTRYR 231 (457)
T ss_dssp HHHHHHHHHHHHHHTTS-HHHHHHHTTS---TTHHHHHHHHHHHHHHHTCTT-CTTHHHHHHHHHHHTTTHHHHSCCHHH
T ss_pred HHHHHHHHHHHHHHccC-HHHHHHHHHc---CCCHHHHHHHHHhhccccCCc-hHHHHHHHHHHHhcccchhccCcchhh
Confidence 56777999999999865 322 1111 134444555554310000000 1122222222222210
Q ss_pred -----------------Hc------------------------Ccc-c-cHhHHHHHHhhhc-CCChhhHhHHHHHHHHH
Q 004960 329 -----------------NL------------------------AKH-V-FPPVFEFASVSCQ-NASPKYREAAVTAIGII 364 (721)
Q Consensus 329 -----------------~~------------------------~~~-~-~~~i~~~l~~~l~-~~~~~~r~~al~~l~~i 364 (721)
.+ +.+ + -..+++.+...+. +.+...+++|+++++.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl 311 (457)
T 1xm9_A 232 QLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNL 311 (457)
T ss_dssp HHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred hcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHh
Confidence 00 000 1 1334555555554 45688999999999999
Q ss_pred hhccHH---HH-HHhH--HHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHh-hhhHHHHHHHhccCCCh----
Q 004960 365 SEGCAE---WM-KEKL--ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSH-YESVLPCILNALEDESD---- 433 (721)
Q Consensus 365 ~~~~~~---~~-~~~l--~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~-~~~~l~~l~~~l~~~~~---- 433 (721)
+.+... .+ ...+ ...+|.+++++.+++..|+..|+|+|++++..-. .... -.+.+|.|++.|...++
T Consensus 312 ~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~--~~~~i~~~~i~~Lv~lL~~~~~~~~~ 389 (457)
T 1xm9_A 312 TASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL--LHRVMGNQVFPEVTRLLTSHTGNTSN 389 (457)
T ss_dssp TTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGG--GHHHHHHHTHHHHHHTTTSCCSCSTT
T ss_pred ccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHH--HHHHHHHhhhHHHHHhccCCCCCCCC
Confidence 875432 22 2223 3678999999999999999999999999987532 2222 25789999999987643
Q ss_pred --HHHHHHHHHHHHHHHhhhhccccc-hHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHH
Q 004960 434 --EVKEKSYYALAAFCEDMGEEILPF-LDPLMGKLLAALENS-PRNLQETCMSAIGSVA 488 (721)
Q Consensus 434 --~v~~~a~~al~~l~~~~~~~~~~~-~~~i~~~l~~~l~~~-~~~v~~~~l~~l~~l~ 488 (721)
++...++++|.+++...++..... -.+.++.|.+++.+. +..++..+...+..+.
T Consensus 390 ~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~ 448 (457)
T 1xm9_A 390 SEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW 448 (457)
T ss_dssp HHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 578899999999986554322211 237788888988888 8889999988876554
No 56
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.52 E-value=1e-10 Score=122.05 Aligned_cols=366 Identities=12% Similarity=0.110 Sum_probs=235.6
Q ss_pred CCCc-chHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccc-cHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhh-
Q 004960 114 GEWP-DLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRP-HFADMQALLLKCLQDETSNRVRIAALKAIGSFLEF- 190 (721)
Q Consensus 114 ~~~~-~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~-~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~- 190 (721)
..|. .-+|.+++.+.++++..+..|..++..++....+.-.. .-...+|.|..+|.+ ++..++..|+++|.++...
T Consensus 43 ~~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s-~~~~vq~~Aa~AL~nLa~~~ 121 (584)
T 3l6x_A 43 PNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDH-PKKEVHLGACGALKNISFGR 121 (584)
T ss_dssp CCCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGC-SSHHHHHHHHHHHHHHTSSS
T ss_pred CCcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCC-CCHHHHHHHHHHHHHHHccC
Confidence 4563 45999999999999999999999999998543221111 123567999999998 8999999999999999864
Q ss_pred cCChhhHHHHHhhHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHhcCccc---chhhhHHHHHHHHHHhhc---------
Q 004960 191 TNDGAEVVKFREFIPSILNVSRQCLAS-GEEDVAVIAFEIFDELIESPAP---LLGDSVKSIVHFSLEVSS--------- 257 (721)
Q Consensus 191 ~~~~~~~~~~~~~l~~ll~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~---~~~~~~~~l~~~~~~~~~--------- 257 (721)
..++.....-..-+|.++..+ .+ .+.+++..+..+|..++..... ....-++.++..+.....
T Consensus 122 ~~~nk~~I~~~GaIp~LV~LL----~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~ 197 (584)
T 3l6x_A 122 DQDNKIAIKNCDGVPALVRLL----RKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNED 197 (584)
T ss_dssp CHHHHHHHHHTTHHHHHHHHH----HHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC------
T ss_pred CHHHHHHHHHcCCHHHHHHHH----cCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhccccccccccccc
Confidence 222222222346788888854 43 5678889999999999875432 222233444443321100
Q ss_pred ---CCCCChHHHHHHHHHHHHHHHHhHh---hhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcC
Q 004960 258 ---SHNLEPNTRHQAIQIISWLAKYKYN---SLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA 331 (721)
Q Consensus 258 ---~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~ 331 (721)
....+++++..|..+|.+++...+. .+... ..+++.++.++...-.. .+.+......+..+|..++....
T Consensus 198 ~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~---~Gli~~LV~~L~~~~~~-~~~~~~~~enav~aL~NLs~~~~ 273 (584)
T 3l6x_A 198 CKPRHIEWESVLTNTAGCLRNVSSERSEARRKLREC---DGLVDALIFIVQAEIGQ-KDSDSKLVENCVCLLRNLSYQVH 273 (584)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHS---TTHHHHHHHHHHHHHHT-TCCSCHHHHHHHHHHHHHHTTHH
T ss_pred ccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHc---CCcHHHHHHHHHHhhcc-cCccHHHHHHHHHHHHHhhcccc
Confidence 0112468999999999999854322 22221 12333344444321000 00112334444455544442210
Q ss_pred ---------------------------ccc--cHhHHHHHHhhhc-CCChhhHhHHHHHHHHHhhccH---HHHHHhH--
Q 004960 332 ---------------------------KHV--FPPVFEFASVSCQ-NASPKYREAAVTAIGIISEGCA---EWMKEKL-- 376 (721)
Q Consensus 332 ---------------------------~~~--~~~i~~~l~~~l~-~~~~~~r~~al~~l~~i~~~~~---~~~~~~l-- 376 (721)
-+. -+..++.+...+. +.++..++.|+.++.+++.+.. ..+...+
T Consensus 274 ~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~ 353 (584)
T 3l6x_A 274 REIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQ 353 (584)
T ss_dssp HHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTS
T ss_pred ccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHH
Confidence 011 1234555566664 5678999999999999976532 2222233
Q ss_pred HHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCC--------ChHHHHHHHHHHHHHHH
Q 004960 377 ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDE--------SDEVKEKSYYALAAFCE 448 (721)
Q Consensus 377 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~--------~~~v~~~a~~al~~l~~ 448 (721)
...+|.|.++|.++++.|+..|+++|++++...... ...-.+.+|.|++.|.+. ...+...+|++|.+++.
T Consensus 354 ~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~-~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a 432 (584)
T 3l6x_A 354 EKALSAIADLLTNEHERVVKAASGALRNLAVDARNK-ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIA 432 (584)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCH-HHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHT
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHH-HHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhc
Confidence 467999999999999999999999999999865422 112368899999999876 35688999999999986
Q ss_pred hhhhccccch-HHHHHHHHHhhcCC--ChhHHHHHHHHHHHHHH
Q 004960 449 DMGEEILPFL-DPLMGKLLAALENS--PRNLQETCMSAIGSVAA 489 (721)
Q Consensus 449 ~~~~~~~~~~-~~i~~~l~~~l~~~--~~~v~~~~l~~l~~l~~ 489 (721)
.......... ...++.|..++.+. ...++..|..++..+..
T Consensus 433 ~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 433 ENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp TCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 5543333322 26788888888875 67888888888887764
No 57
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.49 E-value=1.6e-09 Score=114.67 Aligned_cols=461 Identities=9% Similarity=0.076 Sum_probs=273.9
Q ss_pred CCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhcc--CCcHHHHHHHHHHHHHhhhhhhhcccccHHHHHH-HHHHh
Q 004960 91 HSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQ--SEQEEHREVALILFSSLTETIGQTFRPHFADMQA-LLLKC 167 (721)
Q Consensus 91 ~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~--~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~l~~-~l~~~ 167 (721)
.+..+.-.+.-.+..+.++.+ .|++ +.++.+.+. ....++|..++.++..+.+..++.+...+.+++. .++..
T Consensus 145 ~~~~~~~~l~~~~~l~~~~~~---~~~~-~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~l~~e~ 220 (778)
T 3opb_A 145 EDTHVTYLLSIILQLLNKFKY---NFKE-VRFLVKELILRISEDEVKSMMLIIFAELQSSFQKDFDKAVVDFMSSLIVEA 220 (778)
T ss_dssp CSSCHHHHHHHHHHHHHHSCC---CSTT-TTHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHcCc---cccc-hhhHHHHhccccChhhhHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHhh
Confidence 455666666666666666655 5777 666666553 4567889999999999998888776666666666 33222
Q ss_pred hCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHH-HhhHHHHHHHHHHHh-hcCCHHHHHHHHHHHHHHhcCcccchhhhH
Q 004960 168 LQDETSNRVRIAALKAIGSFLEFTNDGAEVVKF-REFIPSILNVSRQCL-ASGEEDVAVIAFEIFDELIESPAPLLGDSV 245 (721)
Q Consensus 168 l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~~~l~~ll~~l~~~l-~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~ 245 (721)
=.+.++ .-...++.++..+....++.-..... ..+.+.+.. .+ ...+......+++.+........- -.-..
T Consensus 221 ~~~~~~-~~~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~l~~----~~~~~~~~~~~~a~L~lLsaACi~~~c-R~~I~ 294 (778)
T 3opb_A 221 EIDVGN-DPLSIIVKTLSELYPSLTTLCSEIFLTKGLSKLFKK----RVFEEQDLQFTKELLRLLSSACIDETM-RTYIT 294 (778)
T ss_dssp HHTCSS-CHHHHHHHHHHHHTTTTHHHHHHHHSTTTHHHHHHH----HHHSSCCHHHHHHHHHHHHHHCCSHHH-HHHHH
T ss_pred ccCCCC-ccHHHHHHHHHHHhcCCHHHHHHHHccccHHHHHHH----HHhcccchHHHHHHHHHHHHHhCCcHH-HHHHH
Confidence 222111 12223344444433322111000000 123333333 22 234556667777777766554321 11123
Q ss_pred HHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHH
Q 004960 246 KSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDT 325 (721)
Q Consensus 246 ~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~ 325 (721)
...++++.+.+.+ +.+|..|.-.|..+...... ...-+..+.+.+..++...+ ...+..|.+.|.+
T Consensus 295 ~~~~~~L~~~l~~----~~ir~lAavvL~KL~~~~~~---~~~si~~La~~~~~~L~~~~-------~~~~~~AvEgLaY 360 (778)
T 3opb_A 295 ENYLQLLERSLNV----EDVQIYSALVLVKTWSFTKL---TCINLKQLSEIFINAISRRI-------VPKVEMSVEALAY 360 (778)
T ss_dssp HHHHHHHHHHTTS----GGGHHHHHHHHHHHTGGGTC---TTCCHHHHHHHHHHHTTTCC-------HHHHHHHHHHHHH
T ss_pred HhHHHHHHHHhcc----HHHHHHHHHHHHHHhcCCCC---CcCcHHHHHHHHHHHHhcCC-------ccHHHHHHHHHHH
Confidence 4445555555432 46787777766665543221 11235567777888887643 1236777777777
Q ss_pred HHHHcC-cccc---HhHHHHHHhhhcC-CChhhHhHHHHHHHHHhhccHH------------------------------
Q 004960 326 MALNLA-KHVF---PPVFEFASVSCQN-ASPKYREAAVTAIGIISEGCAE------------------------------ 370 (721)
Q Consensus 326 l~~~~~-~~~~---~~i~~~l~~~l~~-~~~~~r~~al~~l~~i~~~~~~------------------------------ 370 (721)
++..-. +..+ +.+++.+.+.+++ .+...-++++..+.++....+.
T Consensus 361 LSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~ 440 (778)
T 3opb_A 361 LSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKA 440 (778)
T ss_dssp HTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHH
T ss_pred HhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCccccccc
Confidence 753221 1111 3446666666663 5566778888888887763210
Q ss_pred ---HHHH----h--HHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChH---HHHH
Q 004960 371 ---WMKE----K--LESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDE---VKEK 438 (721)
Q Consensus 371 ---~~~~----~--l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~---v~~~ 438 (721)
.+.. . -..++|.+...++++++.+|..|+++|..++..-.....-.-++.++.|++.+.+.... +|..
T Consensus 441 ~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~ 520 (778)
T 3opb_A 441 AKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRIL 520 (778)
T ss_dssp HHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHH
T ss_pred chHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHH
Confidence 0001 0 02467888999999999999999999999987743221112258899999999877543 8999
Q ss_pred HHHHHHHHHHhhhhcc--ccc-hHHHHHHHHHhhcC-CCh-------------hHHHHHHHHHHHHHHHhh---hcch-h
Q 004960 439 SYYALAAFCEDMGEEI--LPF-LDPLMGKLLAALEN-SPR-------------NLQETCMSAIGSVAAAAE---QAFI-P 497 (721)
Q Consensus 439 a~~al~~l~~~~~~~~--~~~-~~~i~~~l~~~l~~-~~~-------------~v~~~~l~~l~~l~~~~~---~~~~-~ 497 (721)
|+.+|.++.....+.. ..| ....++.|..++.. +.. --+..++.|+.+++...+ +... .
T Consensus 521 AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~ 600 (778)
T 3opb_A 521 GCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKH 600 (778)
T ss_dssp HHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHH
Confidence 9999999986653322 111 12788888888872 211 115688889999987642 2222 2
Q ss_pred hHH--HHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhch--hhccCCh-HH---HHHHHHhccCCCChhhHHHHHHH
Q 004960 498 YAE--RVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGR--ARMEPIL-PP---FVEAAISGFGLEFSELREYTHGF 569 (721)
Q Consensus 498 ~~~--~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~--~~~~~~~-~~---i~~~l~~~l~~~~~~~~~~~~~~ 569 (721)
... ..+|.|..++.. +...+|..|.++++.++..-.. +.|...- +. =++.++..++.++.++|.++..+
T Consensus 601 Ii~~~ga~~~L~~LL~s---~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagA 677 (778)
T 3opb_A 601 IVSTKVYWSTIENLMLD---ENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAI 677 (778)
T ss_dssp HHHSHHHHHHHHHGGGC---SSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHhC---CCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHH
Confidence 333 367777777753 2346888999999999853211 1232221 22 27778888888899999999999
Q ss_pred HHHHHHHcc
Q 004960 570 FSNIAGVLE 578 (721)
Q Consensus 570 l~~l~~~~~ 578 (721)
++.+....+
T Consensus 678 LAnLts~~~ 686 (778)
T 3opb_A 678 FANIATTIP 686 (778)
T ss_dssp HHHHHHHCH
T ss_pred HHHhcCCCh
Confidence 998864433
No 58
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.47 E-value=2.6e-12 Score=123.03 Aligned_cols=242 Identities=17% Similarity=0.135 Sum_probs=177.2
Q ss_pred HHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhH-HHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhh
Q 004960 339 FEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKL-ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY 417 (721)
Q Consensus 339 ~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 417 (721)
++.+.+.+.++++..|..|+.+++.++...++...... ..+++.+++.++++++.+|..|+++|+.++...+.......
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 83 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV 83 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 56677778888899999999999999987664333332 36789999999999999999999999999976433222222
Q ss_pred -hhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccch-HHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhcc
Q 004960 418 -ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFL-DPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAF 495 (721)
Q Consensus 418 -~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~~~ 495 (721)
.+.++.+++.+.++++.++..++++|.+++...+....... ...++.+.+++.+.++.++..++.+++.++...+...
T Consensus 84 ~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~ 163 (252)
T 4hxt_A 84 DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI 163 (252)
T ss_dssp HTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 47899999999999999999999999999854332211111 3678889999999999999999999999876433222
Q ss_pred hhh-HHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhccCC-hHHHHHHHHhccCCCChhhHHHHHHHHHHH
Q 004960 496 IPY-AERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPI-LPPFVEAAISGFGLEFSELREYTHGFFSNI 573 (721)
Q Consensus 496 ~~~-~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l 573 (721)
... -...+|.+..++.. ++..++..++.+++.++.. +++..... -...++.+...+++++++++..+..+++++
T Consensus 164 ~~~~~~~~i~~L~~ll~~---~~~~v~~~a~~~L~~l~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 239 (252)
T 4hxt_A 164 KAIVDAGGVEVLVKLLTS---TDSEVQKEAARALANIASG-PTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENI 239 (252)
T ss_dssp HHHHHTTHHHHHHHHTTC---SCHHHHHHHHHHHHHHTTS-BHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHCC---CCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 221 13367777777753 3456788899999988742 12111111 124677888888888999999999999999
Q ss_pred HHHcccCcccc
Q 004960 574 AGVLEDGFAQY 584 (721)
Q Consensus 574 ~~~~~~~~~~~ 584 (721)
+...+....+|
T Consensus 240 ~~~~~~~~~~~ 250 (252)
T 4hxt_A 240 KSGGWLEHHHH 250 (252)
T ss_dssp HHTCBCCC---
T ss_pred HcCCCcccccc
Confidence 98777765554
No 59
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.47 E-value=1.1e-11 Score=126.44 Aligned_cols=361 Identities=11% Similarity=0.069 Sum_probs=214.8
Q ss_pred hHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCC-----------CHHHHHHHHHHHHHh
Q 004960 119 LLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDET-----------SNRVRIAALKAIGSF 187 (721)
Q Consensus 119 ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~l~~~~-----------~~~vr~~a~~~l~~l 187 (721)
.++.+...+.+.+... .+..|..+....+.-..-.-...+|.+.+++.... ++++|..|.++|.++
T Consensus 33 ~~~~l~~~~~~~~~~~---~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni 109 (458)
T 3nmz_A 33 MVYSLLSMLGTHDKDD---MSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNI 109 (458)
T ss_dssp ------------CCHH---HHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHH---HHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHH
Confidence 3556666666655442 33344444333221011122456788888887522 279999999999999
Q ss_pred hhhcCChhhHHHHHhhH---HHHH---HHHHHHhhcCC--HH-----H-------HHHHHHHHHHHhcCcccchhhhH-H
Q 004960 188 LEFTNDGAEVVKFREFI---PSIL---NVSRQCLASGE--ED-----V-------AVIAFEIFDELIESPAPLLGDSV-K 246 (721)
Q Consensus 188 ~~~~~~~~~~~~~~~~l---~~ll---~~l~~~l~~~~--~~-----~-------~~~a~~~l~~l~~~~~~~~~~~~-~ 246 (721)
+...++..........+ +.+- ..+.+++.... .+ + ..+|.++|..++... ..-...+ .
T Consensus 110 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~-e~R~~i~~~ 188 (458)
T 3nmz_A 110 IHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDE-EHRHAMNEL 188 (458)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSH-HHHHHHHHT
T ss_pred HccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCCH-HHHHHHHHC
Confidence 99887654433322222 2111 11122333221 11 3 238899999986552 2111111 1
Q ss_pred HHHHHHHHhhc---------CCCCChHHHHHHHHHHHHHHHHhHhhhhhcCC--hHHHHHHHHhhhccCCCCCCCCCCcH
Q 004960 247 SIVHFSLEVSS---------SHNLEPNTRHQAIQIISWLAKYKYNSLKKHKL--VIPILQVMCPLLAESNEAGEDDDLAP 315 (721)
Q Consensus 247 ~l~~~~~~~~~---------~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~--~~~il~~l~~~l~~~~~~~~~~~~~~ 315 (721)
..++.++.++. .+..+..++..|.+.|.+++...... +. .+ ....++.++.+|...+ ...
T Consensus 189 G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~-k~-~i~~~~GaIp~LV~LL~s~~-------~~v 259 (458)
T 3nmz_A 189 GGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVAN-KA-TLCSMKGCMRALVAQLKSES-------EDL 259 (458)
T ss_dssp THHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHH-HH-HHHHCHHHHHHHHHGGGCSC-------HHH
T ss_pred CCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCccc-HH-HHHHcCCcHHHHHHHHhCCC-------HHH
Confidence 22333333331 11113567899999999999654321 10 01 2345777888887543 457
Q ss_pred HHHHHHHHHHHHHHcCc---c-cc-HhHHHHHHhh-hcCCChhhHhHHHHHHHHHhhccHHHHHHh--HHHHHHHHHhhc
Q 004960 316 DRAAAEVIDTMALNLAK---H-VF-PPVFEFASVS-CQNASPKYREAAVTAIGIISEGCAEWMKEK--LESVLHIVLGAL 387 (721)
Q Consensus 316 ~~~a~~~l~~l~~~~~~---~-~~-~~i~~~l~~~-l~~~~~~~r~~al~~l~~i~~~~~~~~~~~--l~~i~~~l~~~l 387 (721)
+..|..+|..++..-.+ . +. ...++.+.+. ..+.+...++.++.++.+++..+.+.-... ....++.+...+
T Consensus 260 ~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL 339 (458)
T 3nmz_A 260 QQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTL 339 (458)
T ss_dssp HHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHh
Confidence 78888888888653111 1 11 2346666665 455678899999999999988553322222 246788889988
Q ss_pred CCCCH----hHHHHHHHHHHHHHhh---hhHHHHHhh-hhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccch-
Q 004960 388 RDPEQ----FVRGAASFALGQFAEY---LQPEIVSHY-ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFL- 458 (721)
Q Consensus 388 ~d~~~----~vr~~a~~~l~~l~~~---~~~~~~~~~-~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~- 458 (721)
.+.+. .++..|+++|.+++.. .+....... .+.+|.|++.|.+.+..++..|+++|.+++...++......
T Consensus 340 ~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~ 419 (458)
T 3nmz_A 340 TYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWD 419 (458)
T ss_dssp TCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred cCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 86554 4899999999999863 322222222 57899999999999999999999999999854333222222
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhh
Q 004960 459 DPLMGKLLAALENSPRNLQETCMSAIGSVAAAAE 492 (721)
Q Consensus 459 ~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~ 492 (721)
.+.++.|..++.+.+..+++.+..++..+....+
T Consensus 420 ~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 420 MGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp HTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 3678899999999999999999999999876543
No 60
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.47 E-value=3.2e-08 Score=111.26 Aligned_cols=626 Identities=12% Similarity=0.120 Sum_probs=318.5
Q ss_pred ChHHHHHHHHHHHHHh------cCCCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhc----CCCHHHHHHHHH----
Q 004960 16 DNDARRQAEDQIKRLA------KDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWA----KLSPQLKQLVKQ---- 81 (721)
Q Consensus 16 d~~~r~~A~~~L~~~~------~~p~~~~~l~~il~~~~~~~vr~~a~~~l~~~i~~~w~----~~~~~~~~~i~~---- 81 (721)
++..+++..+.+..+. ..|+++..++..+.+ ++..+..+...|+....+-.. .++.+-+..+++
T Consensus 125 ~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~--~~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~ 202 (1073)
T 3gjx_A 125 EKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRT--SESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCN 202 (1073)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH
Confidence 4566776666665543 247888888887754 345566666666665544221 122222223332
Q ss_pred -------HHHHHHhhcCCHHHHHHHHHHHHHHHccccCCC-CCcchHHHH-HHhccCCcHHHHHHHHHHHHHhhhhhhhc
Q 004960 82 -------SLIESITLEHSAPVRRASANVVSIIAKYAVPAG-EWPDLLPFL-FQFSQSEQEEHREVALILFSSLTETIGQT 152 (721)
Q Consensus 82 -------~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~-~~~~ll~~l-~~~l~~~~~~~~~~al~~l~~i~~~~~~~ 152 (721)
.+.+.+.+..++.+...+.++++...+.-.... .-+++++.+ ...+. ++..|..|+.|+..++....+.
T Consensus 203 ~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~~~~L~--~~~~r~aA~dcL~eIv~k~~~~ 280 (1073)
T 3gjx_A 203 EFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYKFLN--VPMFRNVSLKCLTEIAGVSVSQ 280 (1073)
T ss_dssp TCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHHHTSS--SHHHHHHHHHHHHHHHHSCSGG
T ss_pred HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHHHhccchHHHHHHHHhcC--ChHHHHHHHHHHHHHHhccccc
Confidence 233344444567777777777777664211100 015678877 56664 5688999999999998642211
Q ss_pred ccc----cHHHHHHHHHHhhCC------------CCCHHHHHHHHHHHHHhhhhcCChhhH-HHHHhhHHHHHHHHHHHh
Q 004960 153 FRP----HFADMQALLLKCLQD------------ETSNRVRIAALKAIGSFLEFTNDGAEV-VKFREFIPSILNVSRQCL 215 (721)
Q Consensus 153 ~~~----~~~~l~~~l~~~l~~------------~~~~~vr~~a~~~l~~l~~~~~~~~~~-~~~~~~l~~ll~~l~~~l 215 (721)
... .+..++..+...+.. ..++..-..-+..+..+.+....-... ..+...+-..++++..+.
T Consensus 281 ~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s 360 (1073)
T 3gjx_A 281 YEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVS 360 (1073)
T ss_dssp GHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHh
Confidence 111 222222222222211 012222122223333322221000000 001234444555555566
Q ss_pred hcCCHHHHHHHHHHHHHHhcCc----------c---------------cchhhhHHHHHHHHHHhhcCCC--------C-
Q 004960 216 ASGEEDVAVIAFEIFDELIESP----------A---------------PLLGDSVKSIVHFSLEVSSSHN--------L- 261 (721)
Q Consensus 216 ~~~~~~~~~~a~~~l~~l~~~~----------~---------------~~~~~~~~~l~~~~~~~~~~~~--------~- 261 (721)
..++.++.+.++..|..+.... . ..+.+++..+...++.-+..++ .
T Consensus 361 ~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~g 440 (1073)
T 3gjx_A 361 EVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQG 440 (1073)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSS
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccc
Confidence 6678999999999998775421 0 1145566666666665443221 0
Q ss_pred ---------ChH-HHHHHH-HHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHc
Q 004960 262 ---------EPN-TRHQAI-QIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNL 330 (721)
Q Consensus 262 ---------~~~-~r~~a~-~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~ 330 (721)
..+ ..+..+ +++..+....+. ..+..+++.+...-+. ++-.|....++..+++.++...
T Consensus 441 e~~re~~~d~~~~~ly~~mrd~L~~lt~l~~~---------~~~~i~~~~l~~~~~~-~~~sW~~lea~~~aigaIag~~ 510 (1073)
T 3gjx_A 441 EVVREFMKDTDSINLYKNMRETLVYLTHLDYV---------DTEIIMTKKLQNQVNG-TEWSWKNLNTLCWAIGSISGAM 510 (1073)
T ss_dssp CEEEEECSSCHHHHHHHHHHHHHHHHHHHCHH---------HHHHHHHHHHHHHHTS-CCCCHHHHHHHHHHHHHTTTSS
T ss_pred hHHHHHHhhcchHHHHHHHHHHHHHHhcCCHH---------HHHHHHHHHHHHHhcC-CCCCHHHHhHHHHHHHHHHCcC
Confidence 011 111111 222222211111 2222333333221000 1124888899999999997666
Q ss_pred Cc----cccHhHHHHHHhhhcCC---ChhhHhH--HHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHH
Q 004960 331 AK----HVFPPVFEFASVSCQNA---SPKYREA--AVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFA 401 (721)
Q Consensus 331 ~~----~~~~~i~~~l~~~l~~~---~~~~r~~--al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~ 401 (721)
.+ .+++.+++.+......+ +.+.+.+ .++.+|...+..... .++++.++..+++.+.++++.|+.+|+.+
T Consensus 511 ~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h-~~~L~~vl~~L~~~m~~~~~~vq~aA~~a 589 (1073)
T 3gjx_A 511 HEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAH-WKFLKTVVNKLFEFMHETHDGVQDMACDT 589 (1073)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHC-HHHHHHHHHHHHHHTTCCSTTHHHHHHHH
T ss_pred CcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhC-HHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 52 57788888887766543 2232233 346777766554332 34688889999999999999999999999
Q ss_pred HHHHHhhhhHHHH--------HhhhhHHHHHHHhccCCChHHHH------------------------------------
Q 004960 402 LGQFAEYLQPEIV--------SHYESVLPCILNALEDESDEVKE------------------------------------ 437 (721)
Q Consensus 402 l~~l~~~~~~~~~--------~~~~~~l~~l~~~l~~~~~~v~~------------------------------------ 437 (721)
+..+++.++..+. +|+++++..+.....+-.+.-..
T Consensus 590 f~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~ 669 (1073)
T 3gjx_A 590 FIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDS 669 (1073)
T ss_dssp HHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHH
Confidence 9999988764321 12222222222211111111111
Q ss_pred ----------------------HHHHHHHHHHHhhhhccccchHHHHHHHHHhhcC-----------------CC-----
Q 004960 438 ----------------------KSYYALAAFCEDMGEEILPFLDPLMGKLLAALEN-----------------SP----- 473 (721)
Q Consensus 438 ----------------------~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~-----------------~~----- 473 (721)
..+.+...++.+.+..+.|++..+.+.+.++.+. ..
T Consensus 670 l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~~~~g~~f~~~~~~i~~~~l~~y~~~s~~i~~~v~~~g~~~~~~~~~~~ 749 (1073)
T 3gjx_A 670 IIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHPFVIQLGRIYLDMLNVYKCLSENISAAIQANGEMVTKQPLIRS 749 (1073)
T ss_dssp HHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGSSHHHHH
T ss_pred HHHHhhcCchhccChHHHHHHHHHHhhhHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHH
Confidence 1222222333344444555555554444433211 00
Q ss_pred -hhHHHHHHHHHHHHHHHhhhc---chhhHHHHHHHHHHHHhccCchhhhhH-HHHHHHHHHHHHhhchhhccCChHHHH
Q 004960 474 -RNLQETCMSAIGSVAAAAEQA---FIPYAERVLELLKIFMVLTNDEDLRSR-ARATELLGLVAESVGRARMEPILPPFV 548 (721)
Q Consensus 474 -~~v~~~~l~~l~~l~~~~~~~---~~~~~~~i~~~l~~~l~~~~~~~~~~~-~~~~~~l~~l~~~~~~~~~~~~~~~i~ 548 (721)
+.+|.+++..+.+.+....+. ...+++.++..+..-... +.++ .| ...+.+++.+...+|. .+.+.++.|+
T Consensus 750 ~r~ik~eil~l~~~~i~~~~~~~~v~~~~i~pl~~~vl~dY~~-~~p~--~r~~evL~l~s~iv~k~~~-~~~~~~~~il 825 (1073)
T 3gjx_A 750 MRTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQR-NVPA--AREPEVLSTMAIIVNKLGG-HITAEIPQIF 825 (1073)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCHHHHHHHTSHHHHHHTHHHHHH-SCGG--GCCTHHHHHHHHHHHHHGG-GTGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHhc-CCcc--cccHHHHHHHHHHHHHHHh-hcchhHHHHH
Confidence 112333333333333222110 112222222222221111 1121 12 3578888999988876 6778888888
Q ss_pred HHHHh----ccC---CCChhhHHHHHHHHHHHHHHcccCcccchh----hhHHHHHhhccCCCCCccCCCCCccccccCC
Q 004960 549 EAAIS----GFG---LEFSELREYTHGFFSNIAGVLEDGFAQYLP----LVVPLAFSSCNLDDGSAVDIDGSDDENINGF 617 (721)
Q Consensus 549 ~~l~~----~l~---~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~----~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 617 (721)
+.+.. .++ .+.|+.|...+..+.++....-..+...=+ .++..++-+++.+
T Consensus 826 ~~vf~~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~~f~~l~~l~~~~~~~~i~~i~wa~kh~------------------ 887 (1073)
T 3gjx_A 826 DAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHT------------------ 887 (1073)
T ss_dssp HHHHHHHHHHHSSCSSSCHHHHHHHHHHHHHHHHHCGGGTTTSCHHHHHHHHHHHHHHHTCS------------------
T ss_pred HHHHHHHHHHHhCCcccCcHHHHHHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHHcCCC------------------
Confidence 87654 344 458999999999999999887765554323 3444444444322
Q ss_pred CCCCCCchhhhhccccceeeecchhhhHHHHHHHHHHHHHHccc------c-ccchHHHHHHHHHhcccC-CChhHHHHH
Q 004960 618 GGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKS------S-YAPFLEESLKILVRHASY-FHEDVRYQA 689 (721)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~~~------~-~~~~~~~~~~~l~~~~~~-~~~~vr~~a 689 (721)
..+.-..++..+.++...... + +..|+-+++..+...+.| .+...-+.-
T Consensus 888 -----------------------~r~i~~~~l~~~~~ll~~~~~~~~~~~~F~~~~~~~~~~~i~~v~td~~h~~~f~~q 944 (1073)
T 3gjx_A 888 -----------------------MRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMH 944 (1073)
T ss_dssp -----------------------SHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTCTTCGGGHHHH
T ss_pred -----------------------ChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhCchHhhhhhHH
Confidence 122334556666666554321 1 334555665555555444 344445555
Q ss_pred HHHHHHHHHHHH
Q 004960 690 VFALKNILTAAH 701 (721)
Q Consensus 690 ~~~l~~l~~~~~ 701 (721)
...|..++.-+.
T Consensus 945 ~~il~~l~~~~~ 956 (1073)
T 3gjx_A 945 ASILAYMFNLVE 956 (1073)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 556666655443
No 61
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.43 E-value=3.6e-11 Score=114.96 Aligned_cols=243 Identities=15% Similarity=0.120 Sum_probs=170.7
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcccc
Q 004960 161 QALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPL 240 (721)
Q Consensus 161 ~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~ 240 (721)
++.+.+.+.+ +++.+|..|++++..+....++......-...++.++. .+.+++++++..++++|..+....+..
T Consensus 4 i~~L~~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~----ll~~~~~~v~~~a~~~L~~l~~~~~~~ 78 (252)
T 4hxt_A 4 VEKLVKLLTS-TDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVK----LLTSTDSEVQKEAARALANIASGPDEA 78 (252)
T ss_dssp HHHHHHHTTC-SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHH----HTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHH----HHhCCCHHHHHHHHHHHHHHHcCChHH
Confidence 5777888888 78999999999999998764322111111245666665 677788999999999999998865433
Q ss_pred hhhhHH-HHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHH
Q 004960 241 LGDSVK-SIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAA 319 (721)
Q Consensus 241 ~~~~~~-~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a 319 (721)
...... ..++.++..+.++ ++.++..++.++..++...+.... .
T Consensus 79 ~~~~~~~~~i~~l~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~------~--------------------------- 123 (252)
T 4hxt_A 79 IKAIVDAGGVEVLVKLLTST--DSEVQKEAARALANIASGPDEAIK------A--------------------------- 123 (252)
T ss_dssp HHHHHHTTHHHHHHHHTTCS--SHHHHHHHHHHHHHHTTSCHHHHH------H---------------------------
T ss_pred HHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCCHHHHH------H---------------------------
Confidence 322221 2455555566544 677888888877777742221100 0
Q ss_pred HHHHHHHHHHcCccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHh-HHHHHHHHHhhcCCCCHhHHHHH
Q 004960 320 AEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEK-LESVLHIVLGALRDPEQFVRGAA 398 (721)
Q Consensus 320 ~~~l~~l~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~-l~~i~~~l~~~l~d~~~~vr~~a 398 (721)
+. -...++.+.+.+.++++..|..++.+++.++...+...... -...++.+...+.++++.+|..|
T Consensus 124 ------~~-------~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a 190 (252)
T 4hxt_A 124 ------IV-------DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEA 190 (252)
T ss_dssp ------HH-------HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHH
T ss_pred ------HH-------HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHH
Confidence 00 01245556666777889999999999999998655432222 24688999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHhh-hhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhcccc
Q 004960 399 SFALGQFAEYLQPEIVSHY-ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILP 456 (721)
Q Consensus 399 ~~~l~~l~~~~~~~~~~~~-~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~ 456 (721)
+++|++++...+....... .++++.+++.+.++++.++..|+++|.++....+....+
T Consensus 191 ~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 249 (252)
T 4hxt_A 191 ARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWLEHHH 249 (252)
T ss_dssp HHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBCCC--
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCccccc
Confidence 9999999975443333322 578999999999999999999999999999877554333
No 62
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.38 E-value=6.5e-10 Score=116.02 Aligned_cols=355 Identities=9% Similarity=0.010 Sum_probs=238.0
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHccccCCC---CCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhh--hhhccccc
Q 004960 82 SLIESITLEHSAPVRRASANVVSIIAKYAVPAG---EWPDLLPFLFQFSQSEQEEHREVALILFSSLTET--IGQTFRPH 156 (721)
Q Consensus 82 ~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~---~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~--~~~~~~~~ 156 (721)
.+++.|.+ .+..++..++.++..++....+.. .-...+|.|.+++.+++...+..|..+|++++.. ......-.
T Consensus 52 ~LV~~L~s-~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~ 130 (584)
T 3l6x_A 52 EVIAMLGF-RLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIK 130 (584)
T ss_dssp HHHHHTTC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHH
T ss_pred HHHHHHCC-CCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 45667765 789999999999999885321100 1134689999999999999999999999999863 11111111
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHH-H-------------hhcCCHHH
Q 004960 157 FADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQ-C-------------LASGEEDV 222 (721)
Q Consensus 157 ~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~-~-------------l~~~~~~~ 222 (721)
-...++.+..+|.+..+..++..+..+|.++.........+ ...-+|.++..+.. . ....++++
T Consensus 131 ~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I--~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V 208 (584)
T 3l6x_A 131 NCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEI--VDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESV 208 (584)
T ss_dssp HTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHH--HHHTHHHHHHHTHHHHHCCC----------CCCCHHH
T ss_pred HcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHH--HhccHHHHHHHHhcccccccccccccccccccccHHH
Confidence 13567888888876357889999999998887643222112 24567888775421 0 01235789
Q ss_pred HHHHHHHHHHHhcCcccch------hhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhh-----------
Q 004960 223 AVIAFEIFDELIESPAPLL------GDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLK----------- 285 (721)
Q Consensus 223 ~~~a~~~l~~l~~~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~----------- 285 (721)
+..|..+|..++...+..- ...++.++..+-......+.+......|+..|.+++........
T Consensus 209 ~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~ 288 (584)
T 3l6x_A 209 LTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPN 288 (584)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-------
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhccc
Confidence 9999999999987653311 12233444444333223334567888899998887743211110
Q ss_pred --------hcCC-----hHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcCc---c---cc--HhHHHHHHh
Q 004960 286 --------KHKL-----VIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAK---H---VF--PPVFEFASV 344 (721)
Q Consensus 286 --------~~~~-----~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~---~---~~--~~i~~~l~~ 344 (721)
...- -+..++.++.++.... .......|..+|..++..... . .+ ...++.+.+
T Consensus 289 ~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~------~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~ 362 (584)
T 3l6x_A 289 VANNTGTSPARGYELLFQPEVVRIYISLLKESK------TPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIAD 362 (584)
T ss_dssp -------CCCCGGGGGGSHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHH
T ss_pred ccccccccCchhHHHHhcccHHHHHHHHHccCC------CHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHH
Confidence 0000 1234566666665432 245677888888888753321 0 11 355888889
Q ss_pred hhcCCChhhHhHHHHHHHHHhhccH--HHHHHhHHHHHHHHHhhcCCC--------CHhHHHHHHHHHHHHHhhhhHHHH
Q 004960 345 SCQNASPKYREAAVTAIGIISEGCA--EWMKEKLESVLHIVLGALRDP--------EQFVRGAASFALGQFAEYLQPEIV 414 (721)
Q Consensus 345 ~l~~~~~~~r~~al~~l~~i~~~~~--~~~~~~l~~i~~~l~~~l~d~--------~~~vr~~a~~~l~~l~~~~~~~~~ 414 (721)
.+.+++...+..++.++++++.+.. ..+ -...+|.++..|.+. +..++..|+++|++++..-+....
T Consensus 363 LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I---~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~ 439 (584)
T 3l6x_A 363 LLTNEHERVVKAASGALRNLAVDARNKELI---GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAK 439 (584)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHTTCSCHHHH---HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHhCChhHHHHH---HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHH
Confidence 9999999999999999999997643 333 246789999999865 467889999999999866444333
Q ss_pred Hhh-hhHHHHHHHhccCC--ChHHHHHHHHHHHHHHH
Q 004960 415 SHY-ESVLPCILNALEDE--SDEVKEKSYYALAAFCE 448 (721)
Q Consensus 415 ~~~-~~~l~~l~~~l~~~--~~~v~~~a~~al~~l~~ 448 (721)
... .+.+|.|++.+.+. .+.++..|+++|.++..
T Consensus 440 ~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 440 KLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp HHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 333 58999999999875 78899999999999974
No 63
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.36 E-value=3.4e-11 Score=115.06 Aligned_cols=235 Identities=13% Similarity=0.136 Sum_probs=164.3
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcccc
Q 004960 161 QALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPL 240 (721)
Q Consensus 161 ~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~ 240 (721)
.+.+.+.|.+ +++.+|..|++++.+++....+......-...+|.++. .+.+++++++..|+++|..++...+..
T Consensus 14 ~~~~~~~L~s-~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~----lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (252)
T 4db8_A 14 LPQMTQQLNS-DDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQ----LLSSPNEQILQEALWALSNIASGGNEQ 88 (252)
T ss_dssp HHHHHHHHHS-SCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH----GGGCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHH----HHcCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 4455666677 88899999999998776652211111111345566665 777788999999999999999765443
Q ss_pred hhhhHH-HHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHH
Q 004960 241 LGDSVK-SIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAA 319 (721)
Q Consensus 241 ~~~~~~-~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a 319 (721)
....+. ..++.++..+.++ ++.+|..++.++..++...+...
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~----------------------------------- 131 (252)
T 4db8_A 89 IQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGGNEQI----------------------------------- 131 (252)
T ss_dssp HHHHHHTTHHHHHHHGGGCS--CHHHHHHHHHHHHHHTTSCHHHH-----------------------------------
T ss_pred HHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCCchHH-----------------------------------
Confidence 333222 2566666666665 67888888888777763211100
Q ss_pred HHHHHHHHHHcCccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhH-HHHHHHHHhhcCCCCHhHHHHH
Q 004960 320 AEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKL-ESVLHIVLGALRDPEQFVRGAA 398 (721)
Q Consensus 320 ~~~l~~l~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~vr~~a 398 (721)
..+. -...++.+.+.+.++++..|..++.+++.++.+.+....... ..+++.++..++++++.+|..|
T Consensus 132 ----~~~~-------~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a 200 (252)
T 4db8_A 132 ----QAVI-------DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA 200 (252)
T ss_dssp ----HHHH-------HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHH
T ss_pred ----HHHH-------HCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHH
Confidence 0000 012456666667788899999999999999987654333222 4678899999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHhh-hhHHHHHHHhccCCChHHHHHHHHHHHHHHH
Q 004960 399 SFALGQFAEYLQPEIVSHY-ESVLPCILNALEDESDEVKEKSYYALAAFCE 448 (721)
Q Consensus 399 ~~~l~~l~~~~~~~~~~~~-~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~ 448 (721)
+++|++++...+....... .+.++.+++.+.+.++.+|..|+++|.+++.
T Consensus 201 ~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 201 LWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 9999999965544333333 4799999999999999999999999998753
No 64
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.36 E-value=2.8e-08 Score=105.29 Aligned_cols=509 Identities=13% Similarity=0.132 Sum_probs=288.9
Q ss_pred CCcHHHHHHHHhc-CCChhHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH-----
Q 004960 34 PQVVPALVQHLRT-AKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIA----- 107 (721)
Q Consensus 34 p~~~~~l~~il~~-~~~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~----- 107 (721)
|+ +..++.-+.- ...+++|..+.+.+-+....+-+.+.+-..+.+-..+++.=..-.+.. ...+..+++.+.
T Consensus 168 ~~-~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~-~~~~~~~l~~lfPi~p~ 245 (778)
T 3opb_A 168 KE-VRFLVKELILRISEDEVKSMMLIIFAELQSSFQKDFDKAVVDFMSSLIVEAEIDVGNDP-LSIIVKTLSELYPSLTT 245 (778)
T ss_dssp TT-TTHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCH-HHHHHHHHHHHTTTTHH
T ss_pred cc-hhhHHHHhccccChhhhHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHhhccCCCCcc-HHHHHHHHHHHhcCCHH
Confidence 45 4555555543 457889999988887777654322222222222222222111101111 122233333322
Q ss_pred --ccccCCCCCcchHHHHHHhccC-CcHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCCHHHHHHHHHHH
Q 004960 108 --KYAVPAGEWPDLLPFLFQFSQS-EQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAI 184 (721)
Q Consensus 108 --~~~~~~~~~~~ll~~l~~~l~~-~~~~~~~~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l 184 (721)
...+- -..+.+.+.+.+.+ .+.....+++..+...|....-. .-.....++.+.+.+++ ..+|..|+-.|
T Consensus 246 ~~s~lfl---~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR-~~I~~~~~~~L~~~l~~---~~ir~lAavvL 318 (778)
T 3opb_A 246 LCSEIFL---TKGLSKLFKKRVFEEQDLQFTKELLRLLSSACIDETMR-TYITENYLQLLERSLNV---EDVQIYSALVL 318 (778)
T ss_dssp HHHHHHS---TTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSHHHH-HHHHHHHHHHHHHHTTS---GGGHHHHHHHH
T ss_pred HHHHHHc---cccHHHHHHHHHhcccchHHHHHHHHHHHHHhCCcHHH-HHHHHhHHHHHHHHhcc---HHHHHHHHHHH
Confidence 11111 13356666666644 34556678888888777443210 11235556777777754 47888888888
Q ss_pred HHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcc--cchhhhHHHHHHHHHHhhcCCCCC
Q 004960 185 GSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPA--PLLGDSVKSIVHFSLEVSSSHNLE 262 (721)
Q Consensus 185 ~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~ 262 (721)
.++........ .-+..+...+.+++..++.+.+..|++.|..+..... ..+... +.++..+++.+.++. +
T Consensus 319 ~KL~~~~~~~~------~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d-~~~L~~Lv~llk~~~-d 390 (778)
T 3opb_A 319 VKTWSFTKLTC------INLKQLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSN-ESFTEILLTMIKSQK-M 390 (778)
T ss_dssp HHHTGGGTCTT------CCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHC-HHHHHHHHHHHTTTC-C
T ss_pred HHHhcCCCCCc------CcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhC-HHHHHHHHHHHhCCC-C
Confidence 88766543321 1223355555557776666779999999999865432 111111 345666666666432 4
Q ss_pred hHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhcc--CCCCCCCCCCcHHHHHHHHHHHHHHHcCccccHhHHH
Q 004960 263 PNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAE--SNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFE 340 (721)
Q Consensus 263 ~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~--~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~i~~ 340 (721)
..+.+.++.++.++++..+......+-+.. +.++... ++.. ..++ ...........-...+-+ ..+++
T Consensus 391 ~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~----Lk~~A~~~~p~~~-~~d~--~~~~~~~v~~~~~~~l~e---aGvIp 460 (778)
T 3opb_A 391 THCLYGLLVIMANLSTLPEEXXXXXXXXXX----XXXXXXXXXPAAD-KVGA--EKAAKEDILLFNEKYILR---TELIS 460 (778)
T ss_dssp TTHHHHHHHHHHHTTCCCCCCCCCCC-----------------------CCT--HHHHHHHHHHHHHHHTTT---TTHHH
T ss_pred chHHHHHHHHHHHhcCCCcccchhhhhhhh----hhhhccccCcccC-cccc--cccchHHHHHHHHHHHHH---CcCHH
Confidence 567888888888888754432111111111 1111111 1111 1111 111111111111111111 23677
Q ss_pred HHHhhhcCCChhhHhHHHHHHHHHhhccH--HHHHHhHHHHHHHHHhhcCCCCHh---HHHHHHHHHHHHHhhhhHHHH-
Q 004960 341 FASVSCQNASPKYREAAVTAIGIISEGCA--EWMKEKLESVLHIVLGALRDPEQF---VRGAASFALGQFAEYLQPEIV- 414 (721)
Q Consensus 341 ~l~~~l~~~~~~~r~~al~~l~~i~~~~~--~~~~~~l~~i~~~l~~~l~d~~~~---vr~~a~~~l~~l~~~~~~~~~- 414 (721)
.+...+.+.+...|+.+++++++++.... ..+.. ...++.++..+.+.... +|..|+.+|.++.....+...
T Consensus 461 ~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvq--qGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f 538 (778)
T 3opb_A 461 FLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQ--QGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIF 538 (778)
T ss_dssp HHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHH--TTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHH--CCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHc
Confidence 77777888999999999999999986532 22222 25678888888765444 899999999999876655432
Q ss_pred -Hh-hhhHHHHHHHhccC-CCh-------------HHHHHHHHHHHHHHHhhh---hccc-cchH--HHHHHHHHhhcCC
Q 004960 415 -SH-YESVLPCILNALED-ESD-------------EVKEKSYYALAAFCEDMG---EEIL-PFLD--PLMGKLLAALENS 472 (721)
Q Consensus 415 -~~-~~~~l~~l~~~l~~-~~~-------------~v~~~a~~al~~l~~~~~---~~~~-~~~~--~i~~~l~~~l~~~ 472 (721)
.+ ..+.++.|++.|.. +.. .-+..|+.||.+++...+ +.+. ..+. ..++.|..++.+.
T Consensus 539 ~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~ 618 (778)
T 3opb_A 539 KKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDE 618 (778)
T ss_dssp SSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCS
T ss_pred CCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCC
Confidence 11 13889999999882 221 126789999999998652 2222 2333 5788999999998
Q ss_pred ChhHHHHHHHHHHHHHHHhhhcc-hhhH----HH---HHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhch--hhccC
Q 004960 473 PRNLQETCMSAIGSVAAAAEQAF-IPYA----ER---VLELLKIFMVLTNDEDLRSRARATELLGLVAESVGR--ARMEP 542 (721)
Q Consensus 473 ~~~v~~~~l~~l~~l~~~~~~~~-~~~~----~~---i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~--~~~~~ 542 (721)
+..+|.++++++..++.... .. ..|+ +. =++.|..++.. ++...|..|..+++.+...... +.+.
T Consensus 619 n~~VrrAA~elI~NL~~~~e-~i~~k~~~~~~~~~~~rL~lLV~Ll~s---~D~~~r~AAagALAnLts~~~~ia~~ll- 693 (778)
T 3opb_A 619 NVPLQRSTLELISNMMSHPL-TIAAKFFNLENPQSLRNFNILVKLLQL---SDVESQRAVAAIFANIATTIPLIAKELL- 693 (778)
T ss_dssp SHHHHHHHHHHHHHHHTSGG-GTGGGTSCCSSHHHHHHHHHHHHGGGC---SCHHHHHHHHHHHHHHHHHCHHHHHHHT-
T ss_pred CHHHHHHHHHHHHHHhCCcH-HHHHHHHhhcCchhhccHHHHHHHHcC---CCHHHHHHHHHHHHHhcCCChHHHHHHH-
Confidence 99999999999999996432 22 2332 22 15556666533 4456777777777777532211 1111
Q ss_pred ChHHHHHHHHhccCC--CChhhHHHHHHHHHHHHHH
Q 004960 543 ILPPFVEAAISGFGL--EFSELREYTHGFFSNIAGV 576 (721)
Q Consensus 543 ~~~~i~~~l~~~l~~--~~~~~~~~~~~~l~~l~~~ 576 (721)
..+..++.++..+++ ++.+++..+..++.+|+..
T Consensus 694 ~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~ 729 (778)
T 3opb_A 694 TKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEV 729 (778)
T ss_dssp TCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred HccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 123566666676766 7999999999999999973
No 65
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.35 E-value=6.8e-12 Score=119.96 Aligned_cols=234 Identities=12% Similarity=0.150 Sum_probs=168.7
Q ss_pred HHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhH-HHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHh
Q 004960 338 VFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKL-ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSH 416 (721)
Q Consensus 338 i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 416 (721)
.++.+...+.+++...+..|+.++..+............ ...++.+++.++++++.+|..|+++|+.++...+......
T Consensus 13 ~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (252)
T 4db8_A 13 ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 92 (252)
T ss_dssp SHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 356666678889999999999999776655322222222 3678999999999999999999999999997544332233
Q ss_pred h-hhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccch-HHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhc
Q 004960 417 Y-ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFL-DPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQA 494 (721)
Q Consensus 417 ~-~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~~ 494 (721)
. .+.++.+++.+.++++.++..++++|.++............ ...++.|.+++.+++..++..++.+++.++...++.
T Consensus 93 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 172 (252)
T 4db8_A 93 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 172 (252)
T ss_dssp HHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHH
Confidence 3 47999999999999999999999999999766543322222 368889999999999999999999999998643322
Q ss_pred chhhH-HHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhccCCh-HHHHHHHHhccCCCChhhHHHHHHHHHH
Q 004960 495 FIPYA-ERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPIL-PPFVEAAISGFGLEFSELREYTHGFFSN 572 (721)
Q Consensus 495 ~~~~~-~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~~~~~~~~l~~ 572 (721)
..... ..++|.|..++.. ++..++..++.+++.++..- ++...... ...++.+...+++++++++..+..++++
T Consensus 173 ~~~~~~~~~i~~L~~ll~~---~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~ 248 (252)
T 4db8_A 173 IQAVIDAGALPALVQLLSS---PNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK 248 (252)
T ss_dssp HHHHHHTTCHHHHHHGGGC---SSHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHCC---CCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 22111 3356667776653 34567788899998887321 11111111 2467888888888899999999999988
Q ss_pred HHH
Q 004960 573 IAG 575 (721)
Q Consensus 573 l~~ 575 (721)
++.
T Consensus 249 l~~ 251 (252)
T 4db8_A 249 LQS 251 (252)
T ss_dssp TC-
T ss_pred Hhc
Confidence 753
No 66
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.33 E-value=1.7e-10 Score=112.03 Aligned_cols=251 Identities=14% Similarity=0.097 Sum_probs=173.9
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcccc
Q 004960 161 QALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPL 240 (721)
Q Consensus 161 ~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~ 240 (721)
++.+...+.+ +++.+|..|+.+|+.+-. ...++.++. .+.++++.++..|.++|+.+.....
T Consensus 25 i~~L~~~L~~-~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~----~l~d~~~~vR~~A~~aL~~l~~~~~-- 86 (280)
T 1oyz_A 25 DDELFRLLDD-HNSLKRISSARVLQLRGG-----------QDAVRLAIE----FCSDKNYIRRDIGAFILGQIKICKK-- 86 (280)
T ss_dssp HHHHHHHTTC-SSHHHHHHHHHHHHHHCC-----------HHHHHHHHH----HHTCSSHHHHHHHHHHHHHSCCCTT--
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHccCC-----------chHHHHHHH----HHcCCCHHHHHHHHHHHHHhccccc--
Confidence 4666778888 899999999999987641 124444554 6778899999999999988764322
Q ss_pred hhhhHHHHHHHHHH-hhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHH
Q 004960 241 LGDSVKSIVHFSLE-VSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAA 319 (721)
Q Consensus 241 ~~~~~~~l~~~~~~-~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a 319 (721)
.++.+++.+.+ ...++ +..+|..++..++.+....+. +.+.+++.+...+.+.+ +.+|..+
T Consensus 87 ---~~~~l~~~L~~~~~~d~--~~~vr~~a~~aL~~l~~~~~~------~~~~~~~~L~~~l~d~~-------~~vR~~a 148 (280)
T 1oyz_A 87 ---CEDNVFNILNNMALNDK--SACVRATAIESTAQRCKKNPI------YSPKIVEQSQITAFDKS-------TNVRRAT 148 (280)
T ss_dssp ---THHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHHHHCGG------GHHHHHHHHHHHTTCSC-------HHHHHHH
T ss_pred ---cchHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhccCCc------ccHHHHHHHHHHhhCCC-------HHHHHHH
Confidence 12334444332 22333 788999999999888754321 23455666666665433 6788888
Q ss_pred HHHHHHHHHHcCccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHH
Q 004960 320 AEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAAS 399 (721)
Q Consensus 320 ~~~l~~l~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~ 399 (721)
..++..++. +..++.+...+.++++..|..++.+++.+.... +..++.+...++|+++.||..|+
T Consensus 149 ~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~--------~~~~~~L~~~l~d~~~~vR~~A~ 213 (280)
T 1oyz_A 149 AFAISVIND-------KATIPLLINLLKDPNGDVRNWAAFAININKYDN--------SDIRDCFVEMLQDKNEEVRIEAI 213 (280)
T ss_dssp HHHHHTC----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC--------HHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHhcCC-------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc--------HHHHHHHHHHhcCCCHHHHHHHH
Confidence 877776543 235566666788999999999999999885321 35677888899999999999999
Q ss_pred HHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcC-CChhHHH
Q 004960 400 FALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALEN-SPRNLQE 478 (721)
Q Consensus 400 ~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~-~~~~v~~ 478 (721)
++|+.+.. +..++.+++.+.+++ ||..+..+|+.+.. +..++.|.+.+.+ ++..++.
T Consensus 214 ~aL~~~~~----------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~----------~~~~~~L~~~l~~~~~~~~~~ 271 (280)
T 1oyz_A 214 IGLSYRKD----------KRVLSVLCDELKKNT--VYDDIIEAAGELGD----------KTLLPVLDTMLYKFDDNEIIT 271 (280)
T ss_dssp HHHHHTTC----------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC----------GGGHHHHHHHHTTSSCCHHHH
T ss_pred HHHHHhCC----------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc----------hhhhHHHHHHHhcCCCcHHHH
Confidence 99998862 256777777787754 88899999987732 1345566666654 3566666
Q ss_pred HHHHHH
Q 004960 479 TCMSAI 484 (721)
Q Consensus 479 ~~l~~l 484 (721)
.++.++
T Consensus 272 ~~~~~l 277 (280)
T 1oyz_A 272 SAIDKL 277 (280)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666654
No 67
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.32 E-value=4.7e-10 Score=116.65 Aligned_cols=353 Identities=9% Similarity=0.026 Sum_probs=228.9
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHccccCCCCC-----cchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccc
Q 004960 81 QSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEW-----PDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRP 155 (721)
Q Consensus 81 ~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~-----~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~ 155 (721)
+.++..|.+ +++.++..++.++..++....+ .+ ...+|.|.++++++++..+..|..+|.+++...++.-..
T Consensus 5 ~~lv~~L~s-~~~~~q~~A~~~L~~l~~~~~~--~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 5 PKAVQYLSS-QDEKYQAIGAYYIQHTCFQDES--AKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp HHHHHHHHS-SCTHHHHHHHHHHHHHTSSCSS--HHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHCC-CCHHHHHHHHHHHHHHHcCChH--HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 346677775 6889999999999999864322 22 456999999999999999999999999998642221111
Q ss_pred c-HHHHHHHHHHhhC-CCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHh----hc--------CCHH
Q 004960 156 H-FADMQALLLKCLQ-DETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCL----AS--------GEED 221 (721)
Q Consensus 156 ~-~~~l~~~l~~~l~-~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l----~~--------~~~~ 221 (721)
. -...+|.+.++|. + +++.++..++++|.++... ++...... ...+|.++..+.... .+ .+++
T Consensus 82 i~~~G~i~~Lv~lL~~~-~~~~~~~~a~~aL~nLa~~-~~~~~~i~-~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~ 158 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRT-GNAEIQKQLTGLLWNLSST-DELKEELI-ADALPVLADRVIIPFSGWCDGNSNMSREVVDPE 158 (457)
T ss_dssp HHHTTCHHHHHHHHTTC-CCHHHHHHHHHHHHHHHTS-SSTHHHHH-HHHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred HHHcCCHHHHHHHHhhC-CCHHHHHHHHHHHHHHhcC-HHhHHHHH-hccHHHHHHHHhccccccccCccchhcccccHH
Confidence 1 1345788899998 5 7899999999999999876 33322122 267888888652100 11 2466
Q ss_pred HHHHHHHHHHHHhcCcccchh------hhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhh------------
Q 004960 222 VAVIAFEIFDELIESPAPLLG------DSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNS------------ 283 (721)
Q Consensus 222 ~~~~a~~~l~~l~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~------------ 283 (721)
+...|.++|..+... +.... ..++.++..+-........+......++.++..++......
T Consensus 159 v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~ 237 (457)
T 1xm9_A 159 VFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNA 237 (457)
T ss_dssp HHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC
T ss_pred HHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccc
Confidence 777999999999876 33222 23344444333211112223445666666666554110000
Q ss_pred ------------hh--------------------hcC-----ChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHH
Q 004960 284 ------------LK--------------------KHK-----LVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTM 326 (721)
Q Consensus 284 ------------~~--------------------~~~-----~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l 326 (721)
+. ... +-...++.++.+|.... +......|..++..+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~------~~~~~e~a~~aL~nl 311 (457)
T 1xm9_A 238 RNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSK------KDATLEACAGALQNL 311 (457)
T ss_dssp ----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHH
T ss_pred ccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcC------CHHHHHHHHHHHHHh
Confidence 00 000 01234445555555432 134566677888777
Q ss_pred HHHcCc---c----cc--HhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCC------
Q 004960 327 ALNLAK---H----VF--PPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPE------ 391 (721)
Q Consensus 327 ~~~~~~---~----~~--~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~------ 391 (721)
+...++ . .+ ...++.+.+.+.+.+...+..|++++++++...... ...-...++.++..|.+.+
T Consensus 312 ~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~-~~i~~~~i~~Lv~lL~~~~~~~~~~ 390 (457)
T 1xm9_A 312 TASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLH-RVMGNQVFPEVTRLLTSHTGNTSNS 390 (457)
T ss_dssp TTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGH-HHHHHHTHHHHHHTTTSCCSCSTTH
T ss_pred ccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHH-HHHHHhhhHHHHHhccCCCCCCCCc
Confidence 653321 1 11 245778888899999999999999999998753211 1112367888888888654
Q ss_pred HhHHHHHHHHHHHHHhhhhHHHHHhh-hhHHHHHHHhccCC-ChHHHHHHHHHHHHHH
Q 004960 392 QFVRGAASFALGQFAEYLQPEIVSHY-ESVLPCILNALEDE-SDEVKEKSYYALAAFC 447 (721)
Q Consensus 392 ~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~l~~l~~~l~~~-~~~v~~~a~~al~~l~ 447 (721)
+.+...++++++++....+....... .+.++.|.+.+.+. +.+++..|++.|.++.
T Consensus 391 ~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~ 448 (457)
T 1xm9_A 391 EDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW 448 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 36888999999999876544333222 58899999999988 8999999999998775
No 68
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.31 E-value=1.2e-10 Score=113.22 Aligned_cols=254 Identities=16% Similarity=0.218 Sum_probs=173.8
Q ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHh
Q 004960 203 FIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYN 282 (721)
Q Consensus 203 ~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~ 282 (721)
.++.++. .+.++++.++..|++.|+.+.. +..++.+...+.++ ++.+|..++..++.+...
T Consensus 24 ~i~~L~~----~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~d~--~~~vR~~A~~aL~~l~~~--- 84 (280)
T 1oyz_A 24 NDDELFR----LLDDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDK--NYIRRDIGAFILGQIKIC--- 84 (280)
T ss_dssp CHHHHHH----HTTCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCS--SHHHHHHHHHHHHHSCCC---
T ss_pred hHHHHHH----HHHcCCHHHHHHHHHHHHccCC----------chHHHHHHHHHcCC--CHHHHHHHHHHHHHhccc---
Confidence 3445554 6778899999999999998863 23444445555554 678999999887665421
Q ss_pred hhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcCccccHhHHHHHHhhhcCCChhhHhHHHHHHH
Q 004960 283 SLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIG 362 (721)
Q Consensus 283 ~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~ 362 (721)
...++.+++.+...+... ++..+|..+..++..++...+. ..+.+++.+...+.++++..|..++.+++
T Consensus 85 ----~~~~~~l~~~L~~~~~~d------~~~~vr~~a~~aL~~l~~~~~~-~~~~~~~~L~~~l~d~~~~vR~~a~~aL~ 153 (280)
T 1oyz_A 85 ----KKCEDNVFNILNNMALND------KSACVRATAIESTAQRCKKNPI-YSPKIVEQSQITAFDKSTNVRRATAFAIS 153 (280)
T ss_dssp ----TTTHHHHHHHHHHHHHHC------SCHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred ----cccchHHHHHHHHHHhcC------CCHHHHHHHHHHHHHHhccCCc-ccHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 112344444444322221 2367889999999988754432 23567788888899999999999999999
Q ss_pred HHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHH
Q 004960 363 IISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYA 442 (721)
Q Consensus 363 ~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~a 442 (721)
.+.. +..++.+...++|+++.||..|+++|+.+... -+..++.+.+.+.++++.||..++.+
T Consensus 154 ~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~--------~~~~~~~L~~~l~d~~~~vR~~A~~a 215 (280)
T 1oyz_A 154 VIND----------KATIPLLINLLKDPNGDVRNWAAFAININKYD--------NSDIRDCFVEMLQDKNEEVRIEAIIG 215 (280)
T ss_dssp TC-------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCC--------CHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred hcCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccC--------cHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 8754 23577788889999999999999999987422 23667888899999999999999999
Q ss_pred HHHHHHhhhhccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHhccCchhhhhHH
Q 004960 443 LAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRA 522 (721)
Q Consensus 443 l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~ 522 (721)
|+.+. . +..++.|...+.+++ +|..+..+++.+.. +..+|.|.+.+....++ ..+.
T Consensus 216 L~~~~---~-------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~----------~~~~~~L~~~l~~~~~~--~~~~ 271 (280)
T 1oyz_A 216 LSYRK---D-------KRVLSVLCDELKKNT--VYDDIIEAAGELGD----------KTLLPVLDTMLYKFDDN--EIIT 271 (280)
T ss_dssp HHHTT---C-------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC----------GGGHHHHHHHHTTSSCC--HHHH
T ss_pred HHHhC---C-------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc----------hhhhHHHHHHHhcCCCc--HHHH
Confidence 98874 1 234555666666644 88888888877632 24567777777543332 3444
Q ss_pred HHHHHH
Q 004960 523 RATELL 528 (721)
Q Consensus 523 ~~~~~l 528 (721)
.+++.+
T Consensus 272 ~~~~~l 277 (280)
T 1oyz_A 272 SAIDKL 277 (280)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 444443
No 69
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.30 E-value=2.8e-09 Score=108.73 Aligned_cols=330 Identities=10% Similarity=0.063 Sum_probs=203.5
Q ss_pred HhhHHHHHHHHHHHhh--------cCCHHHHHHHHHHHHHHhcCcccchhhh--------HHH---HHHHHHHhhcCCC-
Q 004960 201 REFIPSILNVSRQCLA--------SGEEDVAVIAFEIFDELIESPAPLLGDS--------VKS---IVHFSLEVSSSHN- 260 (721)
Q Consensus 201 ~~~l~~ll~~l~~~l~--------~~~~~~~~~a~~~l~~l~~~~~~~~~~~--------~~~---l~~~~~~~~~~~~- 260 (721)
...+|.+++.+...-. .++++.+..|.++|..++...+...... ++. ....+++++....
T Consensus 69 ~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 148 (458)
T 3nmz_A 69 SGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEP 148 (458)
T ss_dssp HTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred CCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc
Confidence 5788888886542111 0347899999999999998765443221 111 1122344444321
Q ss_pred -CC-h--HHHH-------HHHHHHHHHHHHh--HhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHH
Q 004960 261 -LE-P--NTRH-------QAIQIISWLAKYK--YNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMA 327 (721)
Q Consensus 261 -~~-~--~~r~-------~a~~~l~~l~~~~--~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~ 327 (721)
.+ . .++. +|+++|.+++... ...+.....++.++..+..-...+....+.+....+..|..+|..++
T Consensus 149 ~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa 228 (458)
T 3nmz_A 149 GMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLT 228 (458)
T ss_dssp SSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHh
Confidence 01 0 1333 8888888886331 11222223344443333211111110001112345677888888888
Q ss_pred HHcC--cc-c--cHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhH--HHHHHHHHhh-cCCCCHhHHHHHH
Q 004960 328 LNLA--KH-V--FPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKL--ESVLHIVLGA-LRDPEQFVRGAAS 399 (721)
Q Consensus 328 ~~~~--~~-~--~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l--~~i~~~l~~~-l~d~~~~vr~~a~ 399 (721)
..-. .. + ....++.+...+.+++...+..|++++++++.+........+ ...++.+++. +.+.++.++..|+
T Consensus 229 ~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~ 308 (458)
T 3nmz_A 229 FGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVL 308 (458)
T ss_dssp TTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHH
T ss_pred CCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHH
Confidence 5433 11 2 245688888899999999999999999999875211111211 2567888886 4567899999999
Q ss_pred HHHHHHHhhhhHHHHHh--hhhHHHHHHHhccCCCh----HHHHHHHHHHHHHHHh---hhhccccch-HHHHHHHHHhh
Q 004960 400 FALGQFAEYLQPEIVSH--YESVLPCILNALEDESD----EVKEKSYYALAAFCED---MGEEILPFL-DPLMGKLLAAL 469 (721)
Q Consensus 400 ~~l~~l~~~~~~~~~~~--~~~~l~~l~~~l~~~~~----~v~~~a~~al~~l~~~---~~~~~~~~~-~~i~~~l~~~l 469 (721)
.+|.+++......-... ..+.+|.|++.|.+.+. .++..|+++|.++... .++...... ...++.|..++
T Consensus 309 ~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL 388 (458)
T 3nmz_A 309 SALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHL 388 (458)
T ss_dssp HHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHS
T ss_pred HHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHH
Confidence 99999988443221222 36899999999987654 4899999999999862 222222222 25788899999
Q ss_pred cCCChhHHHHHHHHHHHHHHHhhhcchhhH-HHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHH
Q 004960 470 ENSPRNLQETCMSAIGSVAAAAEQAFIPYA-ERVLELLKIFMVLTNDEDLRSRARATELLGLVAE 533 (721)
Q Consensus 470 ~~~~~~v~~~~l~~l~~l~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~ 533 (721)
.+.+..+++.+..+++.++....+...... ...+|.|..++.. .+..++..+..++..++.
T Consensus 389 ~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s---~~~~v~~~Aa~AL~nL~~ 450 (458)
T 3nmz_A 389 KSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHS---KHKMIAMGSAAALRNLMA 450 (458)
T ss_dssp SCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTC---SSHHHHHHHHHHHHHHHT
T ss_pred cCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhC---CCHHHHHHHHHHHHHHHc
Confidence 999999999999999999743222222222 2356777776643 344567788888888874
No 70
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.29 E-value=1.1e-09 Score=120.02 Aligned_cols=322 Identities=12% Similarity=0.143 Sum_probs=215.7
Q ss_pred hhcCCHHHHHHHHHHHHHHhcCcc--cchhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHH
Q 004960 215 LASGEEDVAVIAFEIFDELIESPA--PLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIP 292 (721)
Q Consensus 215 l~~~~~~~~~~a~~~l~~l~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~ 292 (721)
+...+...+..+...+..+..... .... ..++..+...+.++ ... ..|+..+..+++..+..-...+|+-.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~k--~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~ 95 (986)
T 2iw3_A 23 LSVATADNRHEIASEVASFLNGNIIEHDVP---EHFFGELAKGIKDK--KTA--ANAMQAVAHIANQSNLSPSVEPYIVQ 95 (986)
T ss_dssp HTTCCTTTHHHHHHHHHHHHTSSCSSSSCC---HHHHHHHHHHHTSH--HHH--HHHHHHHHHHTCTTTCCTTTHHHHHT
T ss_pred ccccchhHHHHHHHHHHHHHhccccccccc---hhHHHHHHHHHhcc--CCH--HHHHHHHHHHHHhcCCCCCcccchHH
Confidence 333334445566666666655321 1111 13444444443332 111 67777788887543321100122333
Q ss_pred HHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcCccccHhHHHHHHhhhcCC-ChhhHhHHHHHHHHHhhccHHH
Q 004960 293 ILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNA-SPKYREAAVTAIGIISEGCAEW 371 (721)
Q Consensus 293 il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~i~~~l~~~l~~~-~~~~r~~al~~l~~i~~~~~~~ 371 (721)
+++.++....+.. ..++.+|..+...+...+++.....+++.+...+.+. .|+.+.+|+.+++.+++..++.
T Consensus 96 ~~~~~~~~~~dk~-------~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~ 168 (986)
T 2iw3_A 96 LVPAICTNAGNKD-------KEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQ 168 (986)
T ss_dssp THHHHHHHTTCSS-------HHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHH
T ss_pred HHHHHHHHhcCCc-------hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHH
Confidence 4455555555433 5789999999999999999766788888888887654 7999999999999999988999
Q ss_pred HHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhh
Q 004960 372 MKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMG 451 (721)
Q Consensus 372 ~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~ 451 (721)
+...+++++|.+..++.|..+.|..+|..++..+|....+ .-+...+|.|++.+.+++. |- .+...|+.- ....
T Consensus 169 ~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n---~d~~~~~~~~~~~~~~p~~-~~-~~~~~l~~~-tfv~ 242 (986)
T 2iw3_A 169 VALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDN---KDIERFIPSLIQCIADPTE-VP-ETVHLLGAT-TFVA 242 (986)
T ss_dssp HHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCC---TTTGGGHHHHHHHHHCTTH-HH-HHHHHHTTC-CCCS
T ss_pred HHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCC---cchhhhHHHHHHHhcChhh-hH-HHHHHhhcC-eeEe
Confidence 9999999999999999999999999999999999988763 4677889999999999843 32 233333211 0112
Q ss_pred hccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhh--hcchhhHHHHHHHHHHHHhccCchhh-hhHHHHHHHH
Q 004960 452 EEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAE--QAFIPYAERVLELLKIFMVLTNDEDL-RSRARATELL 528 (721)
Q Consensus 452 ~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~--~~~~~~~~~i~~~l~~~l~~~~~~~~-~~~~~~~~~l 528 (721)
+.-.|-+.-+++.|.+.|.+....++..+.-.+.+++.-.. ....+|++.++|.+.+..+..++|+. .+..+|++++
T Consensus 243 ~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l 322 (986)
T 2iw3_A 243 EVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTL 322 (986)
T ss_dssp CCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHH
T ss_pred eecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHH
Confidence 33346777888999999998888888888888888887765 56779999999999998877666653 2233444444
Q ss_pred HHHHHh-hch----hhccCChHHHHHHHHhccC
Q 004960 529 GLVAES-VGR----ARMEPILPPFVEAAISGFG 556 (721)
Q Consensus 529 ~~l~~~-~~~----~~~~~~~~~i~~~l~~~l~ 556 (721)
...+.. .+. .........+...+...+.
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (986)
T 2iw3_A 323 RRVGNVGEDDAIPELSHAGDVSTTLQVVNELLK 355 (986)
T ss_dssp HHHHTCBTTTBCCCCCCTTCHHHHHHHHHHHTT
T ss_pred HHhhccccccccccccccchHHHHHHHHHHHhc
Confidence 444422 111 0122344555555555554
No 71
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.28 E-value=8.2e-11 Score=108.79 Aligned_cols=194 Identities=15% Similarity=0.226 Sum_probs=144.8
Q ss_pred HhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhH-HHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHH
Q 004960 336 PPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKL-ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIV 414 (721)
Q Consensus 336 ~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 414 (721)
+...+.+...+.++++..|..|+++++.++.+.++...... ...++.+++.++++++.+|..|+++|++++...+....
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 34566677778899999999999999999976654433332 36789999999999999999999999999865443322
Q ss_pred Hhh-hhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccch-HHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhh
Q 004960 415 SHY-ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFL-DPLMGKLLAALENSPRNLQETCMSAIGSVAAAAE 492 (721)
Q Consensus 415 ~~~-~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~ 492 (721)
... .+.++.+++.+.++++.++..++++|.+++...+....... ...++.|.+++.+++..++..++.+++.++...+
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 170 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (210)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCc
Confidence 222 57899999999999999999999999999865433322222 3688899999999999999999999999986433
Q ss_pred hcchhhH-HHHHHHHHHHHhccCchhhhhHHHHHHHHHHHH
Q 004960 493 QAFIPYA-ERVLELLKIFMVLTNDEDLRSRARATELLGLVA 532 (721)
Q Consensus 493 ~~~~~~~-~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~ 532 (721)
+...... ...++.|..++.. ++..++..+..+++.++
T Consensus 171 ~~~~~~~~~g~i~~L~~ll~~---~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 171 EQKQAVKEAGALEKLEQLQSH---ENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHHHTTHHHHHHHGGGC---SCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCHHHHHHHHhC---CCHHHHHHHHHHHHHHh
Confidence 2222221 2366777776653 34567788888887764
No 72
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.24 E-value=1.5e-09 Score=104.10 Aligned_cols=216 Identities=15% Similarity=0.154 Sum_probs=148.0
Q ss_pred hhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHh-hcCCCCHhHHHHHHHHHHHHHhhhhHHHHH-hh-hhHHHHHHHhc
Q 004960 352 KYREAAVTAIGIISEGCAEWMKEKLESVLHIVLG-ALRDPEQFVRGAASFALGQFAEYLQPEIVS-HY-ESVLPCILNAL 428 (721)
Q Consensus 352 ~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~-~~-~~~l~~l~~~l 428 (721)
..|..|+..|..+++.......-.-...++.++. +|+++++.||..|+|+|+.++...+. .+. .+ .+.+|.|++.|
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~-~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAA-IQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH-HHHHHHHCCCHHHHHHHH
Confidence 5677888888888876432111011245788888 99999999999999999999976543 233 22 47899999999
Q ss_pred cC-CChHHHHHHHHHHHHHHHhhhhccccchH-HHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhcchhhHH-HHHHH
Q 004960 429 ED-ESDEVKEKSYYALAAFCEDMGEEILPFLD-PLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAE-RVLEL 505 (721)
Q Consensus 429 ~~-~~~~v~~~a~~al~~l~~~~~~~~~~~~~-~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~~~~~~~~-~i~~~ 505 (721)
.+ ++..++..|+++|++++...+.....+.. ..++.|..++.+++..++..++.+++.++....+......+ .++|.
T Consensus 134 ~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~ 213 (296)
T 1xqr_A 134 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ 213 (296)
T ss_dssp HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHH
Confidence 84 57889999999999999776544434433 67888999999999999999999999998763332222222 27777
Q ss_pred HHHHHhccCchhhhhHHHHHHHHHHHHHhhchhh------ccCChHHHHHHHHhccCCC--ChhhHHHHHHHHHH
Q 004960 506 LKIFMVLTNDEDLRSRARATELLGLVAESVGRAR------MEPILPPFVEAAISGFGLE--FSELREYTHGFFSN 572 (721)
Q Consensus 506 l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~------~~~~~~~i~~~l~~~l~~~--~~~~~~~~~~~l~~ 572 (721)
|..++.. ++..++..++.+++.+... +++. ..+.+..+++..++.++.. ..++.+.+..++..
T Consensus 214 Lv~LL~~---~d~~v~~~al~aL~~l~~~-~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~ 284 (296)
T 1xqr_A 214 LVALVRT---EHSPFHEHVLGALCSLVTD-FPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQT 284 (296)
T ss_dssp HHHHHTS---CCSTHHHHHHHHHHHHHTT-CHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHcC---CChhHHHHHHHHHHHHHhC-ChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHH
Confidence 7777754 3456788899999998854 2211 1123455555555555522 34455555444443
No 73
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.22 E-value=1.1e-08 Score=84.96 Aligned_cols=213 Identities=15% Similarity=0.126 Sum_probs=163.2
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhh
Q 004960 207 ILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKK 286 (721)
Q Consensus 207 ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~ 286 (721)
++..+...+.++-|-+++.|+..+..+++..+....+.+..++..+-. ++ ....-......++.+++..|..
T Consensus 33 ~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~k---sE--aIpltqeIa~a~G~la~i~Pe~--- 104 (253)
T 2db0_A 33 VLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKK---SE--AIPLTQEIAKAFGQMAKEKPEL--- 104 (253)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH---CC--SHHHHHHHHHHHHHHHHHCHHH---
T ss_pred HHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhh---cc--cCchHHHHHHHHhHHHHhCHHH---
Confidence 333344478888899999999999999999999888888877665432 22 2333344556777788766654
Q ss_pred cCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcCccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhh
Q 004960 287 HKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISE 366 (721)
Q Consensus 287 ~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~ 366 (721)
+.++++.++....-.+ ...+.....++..++...|. ..+.++.-+...+.|++...|-+++.+++.+.+
T Consensus 105 ---v~~vVp~lfanyrigd-------~kikIn~~yaLeeIaranP~-l~~~v~rdi~smltskd~~Dkl~aLnFi~alGe 173 (253)
T 2db0_A 105 ---VKSMIPVLFANYRIGD-------EKTKINVSYALEEIAKANPM-LMASIVRDFMSMLSSKNREDKLTALNFIEAMGE 173 (253)
T ss_dssp ---HHHHHHHHHHHSCCCS-------HHHHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCT
T ss_pred ---HHhhHHHHHHHHhcCC-------ccceecHHHHHHHHHHhChH-HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence 5567777776665543 34555666778888877664 567777778888899999999999999999999
Q ss_pred ccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHH
Q 004960 367 GCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAF 446 (721)
Q Consensus 367 ~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l 446 (721)
+..+.+.|+ +|.++.+|.|.+..||..|..+|+.+++.-+ .+..++...++.+.|.+..|....-.+|+.+
T Consensus 174 n~~~yv~Pf----LprL~aLL~D~deiVRaSaVEtL~~lA~~np-----klRkii~~kl~e~~D~S~lv~~~V~egL~rl 244 (253)
T 2db0_A 174 NSFKYVNPF----LPRIINLLHDGDEIVRASAVEALVHLATLND-----KLRKVVIKRLEELNDTSSLVNKTVKEGISRL 244 (253)
T ss_dssp TTHHHHGGG----HHHHHGGGGCSSHHHHHHHHHHHHHHHTSCH-----HHHHHHHHHHHHCCCSCHHHHHHHHHHHHHH
T ss_pred cCccccCcc----hHHHHHHHcCcchhhhHHHHHHHHHHHHcCH-----HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 888776666 4567789999999999999999999998754 3667777788889999998998888888887
Q ss_pred H
Q 004960 447 C 447 (721)
Q Consensus 447 ~ 447 (721)
+
T Consensus 245 ~ 245 (253)
T 2db0_A 245 L 245 (253)
T ss_dssp H
T ss_pred H
Confidence 5
No 74
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.19 E-value=2.5e-10 Score=105.54 Aligned_cols=189 Identities=25% Similarity=0.293 Sum_probs=143.1
Q ss_pred HhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHH
Q 004960 336 PPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVS 415 (721)
Q Consensus 336 ~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 415 (721)
+..++.+.+.+.++++..|..++..++.+.. +..++.+...+.|+++.||..|+++|+.+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------- 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------
Confidence 4556677777889999999999999998865 2456778888999999999999999998753
Q ss_pred hhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhcc
Q 004960 416 HYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAF 495 (721)
Q Consensus 416 ~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~~~ 495 (721)
+..++.+.+.+.++++.||..++.+|+.+.. +..++.|...+.++++.+|..++.+++.+..
T Consensus 80 --~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------ 141 (211)
T 3ltm_A 80 --ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD------ 141 (211)
T ss_dssp --GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC------
Confidence 2567788888999999999999999988732 2355667778889999999999999988732
Q ss_pred hhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCChhhHHHHHHHHHHHHH
Q 004960 496 IPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAG 575 (721)
Q Consensus 496 ~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~ 575 (721)
+..++.|...+. +++..+|..++.+++.+. . +..++.+...++++++.+|..+..+++.+..
T Consensus 142 ----~~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~----~-------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 142 ----ERAVEPLIKALK---DEDGWVRQSAADALGEIG----G-------ERVRAAMEKLAETGTGFARKVAVNYLETHKS 203 (211)
T ss_dssp ----GGGHHHHHHHTT---CSSHHHHHHHHHHHHHHC----S-------HHHHHHHHHHHHHCCHHHHHHHHHHHHC---
T ss_pred ----HHHHHHHHHHHc---CCCHHHHHHHHHHHHHhC----c-------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 123555555553 345678888888888874 2 4556666666778899999999999888765
Q ss_pred Hcc
Q 004960 576 VLE 578 (721)
Q Consensus 576 ~~~ 578 (721)
..+
T Consensus 204 ~~~ 206 (211)
T 3ltm_A 204 FNH 206 (211)
T ss_dssp ---
T ss_pred CCC
Confidence 444
No 75
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.19 E-value=5e-10 Score=102.53 Aligned_cols=187 Identities=25% Similarity=0.285 Sum_probs=144.9
Q ss_pred cccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHH
Q 004960 333 HVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPE 412 (721)
Q Consensus 333 ~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 412 (721)
...+...+.+.+.++++++..|..|+.+++.+... ..++.+...++|+++.||..|+++|+.+...
T Consensus 10 ~~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~----------~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~---- 75 (201)
T 3ltj_A 10 HTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE----------RAVEPLIKALKDEDAWVRRAAADALGQIGDE---- 75 (201)
T ss_dssp CCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG----
T ss_pred ccCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCCh----------hHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH----
Confidence 34466788888899999999999999999988752 4567778888999999999999999987532
Q ss_pred HHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhh
Q 004960 413 IVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAE 492 (721)
Q Consensus 413 ~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~ 492 (721)
..++.+.+.+.++++.||..++++|+.+.. +..++.|...+.++++.+|..++.+++.+..
T Consensus 76 ------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--- 136 (201)
T 3ltj_A 76 ------RAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--- 136 (201)
T ss_dssp ------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC---
T ss_pred ------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---
Confidence 457778888999999999999999988632 2355667778889999999999999988742
Q ss_pred hcchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCChhhHHHHHHHHHH
Q 004960 493 QAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSN 572 (721)
Q Consensus 493 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~ 572 (721)
+..++.|...+. +++..+|..++.+++.++ . +..++.+...++++++.+|..+..+++.
T Consensus 137 -------~~~~~~L~~~l~---d~~~~vr~~A~~aL~~~~----~-------~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 137 -------ERAVEPLIKALK---DEDGWVRQSAADALGEIG----G-------ERVRAAMEKLAETGTGFARKVAVNYLET 195 (201)
T ss_dssp -------GGGHHHHHHHTT---CSSHHHHHHHHHHHHHHC----S-------HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHc---CCCHHHHHHHHHHHHHhC----c-------hhHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 123455555553 345678888888888873 2 3455666666777899999999888887
Q ss_pred H
Q 004960 573 I 573 (721)
Q Consensus 573 l 573 (721)
+
T Consensus 196 l 196 (201)
T 3ltj_A 196 H 196 (201)
T ss_dssp C
T ss_pred H
Confidence 5
No 76
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.18 E-value=6.9e-10 Score=102.51 Aligned_cols=186 Identities=15% Similarity=0.187 Sum_probs=142.3
Q ss_pred HHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcCc---ccc-HhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHH
Q 004960 296 VMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAK---HVF-PPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEW 371 (721)
Q Consensus 296 ~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~---~~~-~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~ 371 (721)
.+..++...+ ...+..|..++..++...++ .+. ...++.+.+.+.++++..|..|+.+++.++.+.+..
T Consensus 16 ~l~~LL~s~~-------~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 16 QMVQQLNSPD-------QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp HHHHHTTCSC-------HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHhcCCC-------HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence 3555555433 57788888889888753331 111 246788888899999999999999999999765543
Q ss_pred HHHhH-HHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhh-hhHHHHHHHhccCCChHHHHHHHHHHHHHHHh
Q 004960 372 MKEKL-ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY-ESVLPCILNALEDESDEVKEKSYYALAAFCED 449 (721)
Q Consensus 372 ~~~~l-~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~ 449 (721)
..... ...++.++..++++++.+|..|+++|++++...+....... .+.++.|++.+.+++..++..++++|.+++..
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (210)
T ss_dssp HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 33222 35789999999999999999999999999976544333333 57999999999999999999999999999876
Q ss_pred hhhccccch-HHHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q 004960 450 MGEEILPFL-DPLMGKLLAALENSPRNLQETCMSAIGSVA 488 (721)
Q Consensus 450 ~~~~~~~~~-~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~ 488 (721)
.+....... ...++.|.+++.+.+..+++.+..+++.++
T Consensus 169 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 433222222 367889999999999999999999998875
No 77
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.14 E-value=2.9e-09 Score=102.21 Aligned_cols=153 Identities=18% Similarity=0.198 Sum_probs=121.9
Q ss_pred HHHHHHh-hhcCCChhhHhHHHHHHHHHhhccHHHHHHhH-HHHHHHHHhhcC-CCCHhHHHHHHHHHHHHHhhhhHHHH
Q 004960 338 VFEFASV-SCQNASPKYREAAVTAIGIISEGCAEWMKEKL-ESVLHIVLGALR-DPEQFVRGAASFALGQFAEYLQPEIV 414 (721)
Q Consensus 338 i~~~l~~-~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l-~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~ 414 (721)
.++.+.. .+.+++...|..|++++|.++.+.+..-...+ ...++.|+.+++ ++++.+|..|+|+|+.++...++...
T Consensus 82 ~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~ 161 (296)
T 1xqr_A 82 GMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLL 161 (296)
T ss_dssp HHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHH
Confidence 3555666 78899999999999999999987654222222 257788888887 56899999999999999987765444
Q ss_pred Hhh-hhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchH-HHHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q 004960 415 SHY-ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLD-PLMGKLLAALENSPRNLQETCMSAIGSVAAA 490 (721)
Q Consensus 415 ~~~-~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~-~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~ 490 (721)
.+. .+.++.|+..|++++..++..|+++|++++...++......+ .+++.|..++.+++..+++.++.+++.++..
T Consensus 162 ~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 162 QFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 443 478999999999999999999999999999874433332322 7889999999999999999999999999865
No 78
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.13 E-value=1.8e-09 Score=98.73 Aligned_cols=185 Identities=19% Similarity=0.234 Sum_probs=137.5
Q ss_pred HHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHH
Q 004960 246 KSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDT 325 (721)
Q Consensus 246 ~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~ 325 (721)
+...+.+++.+.++ +..+|..|+..+..+.. +..++.+...+.+. +..+|..+..++..
T Consensus 13 ~~~~~~~i~~L~~~--~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~~~-------~~~vr~~a~~~L~~ 71 (201)
T 3ltj_A 13 PEKVEMYIKNLQDD--SYYVRRAAAYALGKIGD------------ERAVEPLIKALKDE-------DAWVRRAAADALGQ 71 (201)
T ss_dssp HHHHHHHHHHTTCS--CHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCS-------SHHHHHHHHHHHHH
T ss_pred CcchHHHHHHhcCC--CHHHHHHHHHHHHhcCC------------hhHHHHHHHHHcCC-------CHHHHHHHHHHHHh
Confidence 33444555566555 78899999988775542 12334455555432 25677777777766
Q ss_pred HHHHcCccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHH
Q 004960 326 MALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQF 405 (721)
Q Consensus 326 l~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l 405 (721)
+.. +..++.+...+.++++..|..++.+++.+... ..++.+...++|+++.||..|+++|+.+
T Consensus 72 ~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 134 (201)
T 3ltj_A 72 IGD-------ERAVEPLIKALKDEDGWVRQSAAVALGQIGDE----------RAVEPLIKALKDEDWFVRIAAAFALGEI 134 (201)
T ss_dssp HCC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred hCC-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH----------HHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 532 24566666778899999999999999998652 4567778888999999999999999987
Q ss_pred HhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCChhHHHHHHHHHH
Q 004960 406 AEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIG 485 (721)
Q Consensus 406 ~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~ 485 (721)
.. +..++.|.+.+.++++.||..++.+|+.+- -+..++.|...+.++++.+|..+..+++
T Consensus 135 ~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~----------~~~~~~~L~~~l~d~~~~vr~~A~~aL~ 194 (201)
T 3ltj_A 135 GD----------ERAVEPLIKALKDEDGWVRQSAADALGEIG----------GERVRAAMEKLAETGTGFARKVAVNYLE 194 (201)
T ss_dssp TC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------SHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred CC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------chhHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 53 356778888899999999999999999882 1456677777888889999999999887
Q ss_pred HHH
Q 004960 486 SVA 488 (721)
Q Consensus 486 ~l~ 488 (721)
.+-
T Consensus 195 ~l~ 197 (201)
T 3ltj_A 195 THK 197 (201)
T ss_dssp HCC
T ss_pred HHH
Confidence 653
No 79
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.11 E-value=4.1e-07 Score=105.85 Aligned_cols=480 Identities=11% Similarity=0.067 Sum_probs=256.2
Q ss_pred CCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcc----cccH-HHHHHHHH
Q 004960 91 HSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTF----RPHF-ADMQALLL 165 (721)
Q Consensus 91 ~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~----~~~~-~~l~~~l~ 165 (721)
.++..|+.+-+.+..+-.. | ..|..+...|. -.+.+...|..|+..+.+.+...=..+ ...+ +.+++.+.
T Consensus 25 ~~~~~r~~Ae~~L~~~~~~--p-~~~~~~~~~L~--~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll~~l~ 99 (1204)
T 3a6p_A 25 STQRYRLEALKFCEEFKEK--C-PICVPCGLRLA--EKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELIA 99 (1204)
T ss_dssp CCHHHHHHHHHHHHHHHHH--C-TTHHHHHHHHT--STTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhC--c-hHHHHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 4778898888888877543 2 25666555553 245678899999999998875521111 1111 23344433
Q ss_pred HhhCC--CCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcc-----
Q 004960 166 KCLQD--ETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPA----- 238 (721)
Q Consensus 166 ~~l~~--~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~----- 238 (721)
+.... +....+|.....++..++...-. ..+.++++.+++. ++. ++..+..++.+|..+.+...
T Consensus 100 ~~~~~~~~~~~~vr~kla~~la~Ia~~d~p----~~Wp~ll~~L~~~----~~~-~~~~~e~~L~iL~~L~Eev~~~~~~ 170 (1204)
T 3a6p_A 100 NGTLNILEEENHIKDALSRIVVEMIKREWP----QHWPDMLIELDTL----SKQ-GETQTELVMFILLRLAEDVVTFQTL 170 (1204)
T ss_dssp HSSCCTTSSCHHHHHHHHHHHHHHHHHHST----TTCTTHHHHHHHH----HHT-CHHHHHHHHHHHHHHHHHHHTSCCS
T ss_pred hhccccccccHHHHHHHHHHHHHHHHHhCc----ccchHHHHHHHHH----hcC-CHHHHHHHHHHHHHHHHHHccccch
Confidence 32111 03578999999999888765311 1255666666663 333 45556667777777654310
Q ss_pred ---------cchhhhHHHHHHHHHHhhcCC-----------------CCChHHHHHHHHHHHHHHHHhHhhhhhcCChHH
Q 004960 239 ---------PLLGDSVKSIVHFSLEVSSSH-----------------NLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIP 292 (721)
Q Consensus 239 ---------~~~~~~~~~l~~~~~~~~~~~-----------------~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~ 292 (721)
..+...++.++..+.+.+.+. +.+..++..+++++..+.+..+....... -..
T Consensus 171 ~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~-~~~ 249 (1204)
T 3a6p_A 171 PPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAE-NCK 249 (1204)
T ss_dssp CHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHTT-TSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHHhc-cch
Confidence 012333445555555444220 00123445555555544433221110000 013
Q ss_pred HHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcC--c---cccHhH----HHHHHhhhc--C------CChhhHh
Q 004960 293 ILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA--K---HVFPPV----FEFASVSCQ--N------ASPKYRE 355 (721)
Q Consensus 293 il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~--~---~~~~~i----~~~l~~~l~--~------~~~~~r~ 355 (721)
+++.++..+.. ...+.+|.+|+..+..... + .++..+ +..+.+... + .+...+.
T Consensus 250 ll~~l~~~l~~---------~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k 320 (1204)
T 3a6p_A 250 LLEILCLLLNE---------QELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLK 320 (1204)
T ss_dssp HHHHHHHGGGC---------TTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHH
T ss_pred HHHHHHHHcCC---------HHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHH
Confidence 55555544432 3478899999998886442 1 122111 122222221 1 1122233
Q ss_pred HHHHHHHHHhhccHHH--------HHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhh----hHHHHHhhhhHHHH
Q 004960 356 AAVTAIGIISEGCAEW--------MKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYL----QPEIVSHYESVLPC 423 (721)
Q Consensus 356 ~al~~l~~i~~~~~~~--------~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~----~~~~~~~~~~~l~~ 423 (721)
.-+.++..++...... ..+.+..+++.++.+..+++..|-..++.....+.+.. .+.+.++++.+++.
T Consensus 321 ~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~v 400 (1204)
T 3a6p_A 321 RLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRA 400 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH
Confidence 3344444444322111 12346788999999999998888888887777665542 23455677888888
Q ss_pred H---HHhccCCC------------------------hHHHHHHHHHHHHHHHhhhhccccchHHHHH-HHHHhhcCC---
Q 004960 424 I---LNALEDES------------------------DEVKEKSYYALAAFCEDMGEEILPFLDPLMG-KLLAALENS--- 472 (721)
Q Consensus 424 l---~~~l~~~~------------------------~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~-~l~~~l~~~--- 472 (721)
+ +..+.-+. ...|......+..++...+....+++...+. .+...+.+.
T Consensus 401 l~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~~l~~v~~~l~~~l~~~l~~~~~~ 480 (1204)
T 3a6p_A 401 SMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVN 480 (1204)
T ss_dssp HHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTCC-------
T ss_pred HHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhhcccccc
Confidence 7 44443221 0123444444555544444333333322221 111111110
Q ss_pred ----------------Ch--hHHHHHHHHHHHHHHHhhhcc-hhhHH-HHHHHHHHHHhccCchhhhhHHHHHHHHHHHH
Q 004960 473 ----------------PR--NLQETCMSAIGSVAAAAEQAF-IPYAE-RVLELLKIFMVLTNDEDLRSRARATELLGLVA 532 (721)
Q Consensus 473 ----------------~~--~v~~~~l~~l~~l~~~~~~~~-~~~~~-~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~ 532 (721)
++ ...+....++..++..+.... .++++ .+.+.+...+...+.++..++..++.+++.+.
T Consensus 481 ~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~ 560 (1204)
T 3a6p_A 481 SCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALF 560 (1204)
T ss_dssp ----------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHG
T ss_pred cccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHH
Confidence 11 122343444444444331111 12222 23444444332211234457788899998887
Q ss_pred HhhchhhccCChHHHHHHHHhccCC------------CChhhHHHHHHHHHHHHHHcccCcccchhhhHHHHHhhc
Q 004960 533 ESVGRARMEPILPPFVEAAISGFGL------------EFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSC 596 (721)
Q Consensus 533 ~~~~~~~~~~~~~~i~~~l~~~l~~------------~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~ 596 (721)
.-+. .-..+++.+++.++..+.+ ...++|..+..++..++..++..+.||++.+...+-...
T Consensus 561 ~~~~--~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l 634 (1204)
T 3a6p_A 561 PFVT--YRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLL 634 (1204)
T ss_dssp GGGG--TCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHH
T ss_pred HHHh--cCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 5543 2235778888888776543 134799999999999999999999999999999876554
No 80
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.09 E-value=3.2e-08 Score=108.67 Aligned_cols=244 Identities=12% Similarity=0.171 Sum_probs=191.4
Q ss_pred hHHHHHHhhhcCCChhhHhHHHHHHHHHhhccH--HHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHH
Q 004960 337 PVFEFASVSCQNASPKYREAAVTAIGIISEGCA--EWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIV 414 (721)
Q Consensus 337 ~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~--~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 414 (721)
.+++.+.+.+.+.... ++|+.+++.++...+ ....+++-.++|.++..+.|....||.+|..++..+...+++.
T Consensus 54 ~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~-- 129 (986)
T 2iw3_A 54 HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPV-- 129 (986)
T ss_dssp HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGG--
T ss_pred hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHH--
Confidence 5666666666655333 999999999996543 3557887788999999999999999999999999999988763
Q ss_pred HhhhhHHHHHHHhccCC-ChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhh-
Q 004960 415 SHYESVLPCILNALEDE-SDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAE- 492 (721)
Q Consensus 415 ~~~~~~l~~l~~~l~~~-~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~- 492 (721)
....++|.|+..+.+. .+..+..|+.++..+++..+..+...++++++.+..++.+..++|+..+..++..++...+
T Consensus 130 -a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n 208 (986)
T 2iw3_A 130 -AIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDN 208 (986)
T ss_dssp -GHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCC
T ss_pred -HHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCC
Confidence 3478888888888755 5789999999999999988888889999999999999999999999999999999988877
Q ss_pred hcchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhh-chhhccCChHHHHHHHHhccCCCChhhHHHHHHHHH
Q 004960 493 QAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESV-GRARMEPILPPFVEAAISGFGLEFSELREYTHGFFS 571 (721)
Q Consensus 493 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~ 571 (721)
.++.|+++.++..+ .. |+ ..-+|+..++... -.+.-.|-+.-+++.+.+.|+.....+++.+...+.
T Consensus 209 ~d~~~~~~~~~~~~----~~---p~-----~~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~ 276 (986)
T 2iw3_A 209 KDIERFIPSLIQCI----AD---PT-----EVPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIID 276 (986)
T ss_dssp TTTGGGHHHHHHHH----HC---TT-----HHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHh----cC---hh-----hhHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEc
Confidence 67888777666544 32 21 1345555554211 011222344567888888998888888888889999
Q ss_pred HHHHHccc--CcccchhhhHHHHHhhcc
Q 004960 572 NIAGVLED--GFAQYLPLVVPLAFSSCN 597 (721)
Q Consensus 572 ~l~~~~~~--~~~~~l~~i~~~ll~~~~ 597 (721)
+||+...+ +..||+|.++|.+-+..+
T Consensus 277 n~~~lv~~~~~~~~f~~~l~p~~~~~~~ 304 (986)
T 2iw3_A 277 NMCKLVEDPQVIAPFLGKLLPGLKSNFA 304 (986)
T ss_dssp HHHTTCCCHHHHHHHHTTTHHHHHHHTT
T ss_pred chhhhcCCHHHHhhhhhhhhhHHHHHhh
Confidence 99997765 679999999999987653
No 81
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.08 E-value=2.6e-09 Score=98.55 Aligned_cols=183 Identities=19% Similarity=0.235 Sum_probs=134.2
Q ss_pred HHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcC
Q 004960 252 SLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA 331 (721)
Q Consensus 252 ~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~ 331 (721)
++..+.++ +..+|..++..+..+.. +..++.+...+.+. +..++..+..++..+..
T Consensus 24 L~~~L~~~--~~~vR~~A~~~L~~~~~------------~~~~~~L~~~l~~~-------~~~vr~~a~~aL~~~~~--- 79 (211)
T 3ltm_A 24 YIKNLQDD--SYYVRRAAAYALGKIGD------------ERAVEPLIKALKDE-------DAWVRRAAADALGQIGD--- 79 (211)
T ss_dssp HHHHTTCS--SHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCS-------CHHHHHHHHHHHHHHCC---
T ss_pred HHHHHcCC--CHHHHHHHHHHHHHhCC------------ccHHHHHHHHHcCC-------CHHHHHHHHHHHHhhCC---
Confidence 33444444 78899999887776542 12334455555433 26678777777766542
Q ss_pred ccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhH
Q 004960 332 KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQP 411 (721)
Q Consensus 332 ~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 411 (721)
+..++.+...+.++++..|..++.+++.+... ..++.+.+.++|+++.||..|+++|+.+..
T Consensus 80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---- 141 (211)
T 3ltm_A 80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGDE----------RAVEPLIKALKDEDWFVRIAAAFALGEIGD---- 141 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH----------HHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----
Confidence 34566666778899999999999999988652 456778888999999999999999998753
Q ss_pred HHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHh
Q 004960 412 EIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAA 491 (721)
Q Consensus 412 ~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~ 491 (721)
+..++.|.+.+.++++.||..++.+|+.+-. +..++.|...+.+.++.+|..+..+++.+....
T Consensus 142 ------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 142 ------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp ------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred ------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 2567788888999999999999999998831 456777888888899999999999998776554
Q ss_pred h
Q 004960 492 E 492 (721)
Q Consensus 492 ~ 492 (721)
+
T Consensus 206 ~ 206 (211)
T 3ltm_A 206 H 206 (211)
T ss_dssp -
T ss_pred C
Confidence 3
No 82
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.07 E-value=2.5e-08 Score=98.58 Aligned_cols=271 Identities=9% Similarity=0.008 Sum_probs=174.1
Q ss_pred HHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHh-------hcCCHHHHHHHHHHHHHHhcCcccchhhh--H
Q 004960 175 RVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCL-------ASGEEDVAVIAFEIFDELIESPAPLLGDS--V 245 (721)
Q Consensus 175 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l-------~~~~~~~~~~a~~~l~~l~~~~~~~~~~~--~ 245 (721)
.....|+++|.++.... +......-...++.++..+..-. ...+++++..|.+.|..++......-... .
T Consensus 47 ~~~~~A~~aL~nls~d~-e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~ 125 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFDE-EHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125 (354)
T ss_dssp GTHHHHHHHHHHHHTSH-HHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCH-HHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 45557888888887542 21111122456777777653211 01246788999999999987654221111 2
Q ss_pred HHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHH
Q 004960 246 KSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDT 325 (721)
Q Consensus 246 ~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~ 325 (721)
...++.+++.+.++ +++++..|...|..++.......+ ..
T Consensus 126 ~GaIp~LV~LL~s~--~~~v~~~A~~aL~nLs~~~~~~~k-------------------------------~~------- 165 (354)
T 3nmw_A 126 KGCMRALVAQLKSE--SEDLQQVIASVLRNLSWRADVNSK-------------------------------KT------- 165 (354)
T ss_dssp HHHHHHHHHGGGCS--CHHHHHHHHHHHHHHHTTCCHHHH-------------------------------HH-------
T ss_pred CCcHHHHHHHHCCC--CHHHHHHHHHHHHHHhccCCHHHH-------------------------------HH-------
Confidence 34567777777665 678999999888888742100000 00
Q ss_pred HHHHcCccccHhHHHHHHhh-hcCCChhhHhHHHHHHHHHhhccHHHHHHh--HHHHHHHHHhhcCCCCH----hHHHHH
Q 004960 326 MALNLAKHVFPPVFEFASVS-CQNASPKYREAAVTAIGIISEGCAEWMKEK--LESVLHIVLGALRDPEQ----FVRGAA 398 (721)
Q Consensus 326 l~~~~~~~~~~~i~~~l~~~-l~~~~~~~r~~al~~l~~i~~~~~~~~~~~--l~~i~~~l~~~l~d~~~----~vr~~a 398 (721)
+.+ . ..++.+.+. ..+.+...++.++.++.+++..+.+.-... ....++.|...+.+.++ .++..|
T Consensus 166 i~~-~------G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A 238 (354)
T 3nmw_A 166 LRE-V------GSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESG 238 (354)
T ss_dssp HHH-T------THHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHH
T ss_pred HHH-C------CCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHH
Confidence 000 0 112222332 234566778888888888887553322222 24678888898886654 489999
Q ss_pred HHHHHHHHhh---hhHHHHHhh-hhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccch-HHHHHHHHHhhcCCC
Q 004960 399 SFALGQFAEY---LQPEIVSHY-ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFL-DPLMGKLLAALENSP 473 (721)
Q Consensus 399 ~~~l~~l~~~---~~~~~~~~~-~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~-~~i~~~l~~~l~~~~ 473 (721)
+++|.+++.. .+....... .+.+|.|++.|.+.+..++..|+++|.+++...++...... ...++.|.+++.+.+
T Consensus 239 ~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~ 318 (354)
T 3nmw_A 239 GGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKH 318 (354)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSS
T ss_pred HHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCC
Confidence 9999999862 222222222 57899999999999999999999999999743332222222 367889999999999
Q ss_pred hhHHHHHHHHHHHHHHHhhh
Q 004960 474 RNLQETCMSAIGSVAAAAEQ 493 (721)
Q Consensus 474 ~~v~~~~l~~l~~l~~~~~~ 493 (721)
..+++.+..++..+....+.
T Consensus 319 ~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 319 KMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHHHHHHcCCHH
Confidence 99999999999998876444
No 83
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.05 E-value=6e-08 Score=95.85 Aligned_cols=269 Identities=13% Similarity=0.055 Sum_probs=161.4
Q ss_pred HHHHHHHHHHHHhhhhhhhcccccH--HHHHHHHHHhhC----------CCCCHHHHHHHHHHHHHhhhhcCChhh-HHH
Q 004960 133 EHREVALILFSSLTETIGQTFRPHF--ADMQALLLKCLQ----------DETSNRVRIAALKAIGSFLEFTNDGAE-VVK 199 (721)
Q Consensus 133 ~~~~~al~~l~~i~~~~~~~~~~~~--~~l~~~l~~~l~----------~~~~~~vr~~a~~~l~~l~~~~~~~~~-~~~ 199 (721)
.....|+.+|+++..+.. ....+ ...++.+..+|. +..++.++..|.++|.+++...+.... +..
T Consensus 47 ~~~~~A~~aL~nls~d~e--~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~ 124 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFDEE--HRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 124 (354)
T ss_dssp GTHHHHHHHHHHHHTSHH--HHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHH--HHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445578888888875421 11111 233455555542 113567999999999999865322211 111
Q ss_pred HHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcC-cccchhhhH-HHHHHHHHHhh-cCCCCChHHHHHHHHHHHHH
Q 004960 200 FREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIES-PAPLLGDSV-KSIVHFSLEVS-SSHNLEPNTRHQAIQIISWL 276 (721)
Q Consensus 200 ~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~-~~~~~~~~~-~~l~~~~~~~~-~~~~~~~~~r~~a~~~l~~l 276 (721)
....+|.++. .+.+++++++..|+++|..++.. .+..-.... ...++.+++.+ .+. +.+++..+...+.++
T Consensus 125 ~~GaIp~LV~----LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~--~~~~~~~A~~aL~nL 198 (354)
T 3nmw_A 125 MKGCMRALVA----QLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK--KESTLKSVLSALWNL 198 (354)
T ss_dssp CHHHHHHHHH----GGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCC--CHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHH----HHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCC--CHHHHHHHHHHHHHH
Confidence 2345777777 67778999999999999999874 221111111 12344444432 233 567888888888777
Q ss_pred HHHhHhhhhhcCC--hHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcCccccHhHHHHHHhhhcCCChhhH
Q 004960 277 AKYKYNSLKKHKL--VIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYR 354 (721)
Q Consensus 277 ~~~~~~~~~~~~~--~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~i~~~l~~~l~~~~~~~r 354 (721)
+...+.. +. .+ ....++.+..++....+ +.+...+
T Consensus 199 s~~~~~n-k~-~i~~~~Gai~~Lv~lL~~~~~-----------------------------------------~~~~~v~ 235 (354)
T 3nmw_A 199 SAHCTEN-KA-DICAVDGALAFLVGTLTYRSQ-----------------------------------------TNTLAII 235 (354)
T ss_dssp HTTCHHH-HH-HHHHSTTHHHHHHHHTTCCCS-----------------------------------------SSCCHHH
T ss_pred HccChhh-hH-HHHHhcCcHHHHHHHhccCCC-----------------------------------------cccHHHH
Confidence 7522111 00 00 01233333443332210 0011345
Q ss_pred hHHHHHHHHHhh---ccHHHHHHhH-HHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhh-hhHHHHHHHhcc
Q 004960 355 EAAVTAIGIISE---GCAEWMKEKL-ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY-ESVLPCILNALE 429 (721)
Q Consensus 355 ~~al~~l~~i~~---~~~~~~~~~l-~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~l~~l~~~l~ 429 (721)
+.++.++.+++. +.++...... ...++.++..|.+.+..++..|+++|++++...+....... .+.+|.|++.+.
T Consensus 236 ~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~ 315 (354)
T 3nmw_A 236 ESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIH 315 (354)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTT
T ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHh
Confidence 555556665554 2222211111 24688899999999999999999999999854333322222 588999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhhhh
Q 004960 430 DESDEVKEKSYYALAAFCEDMGE 452 (721)
Q Consensus 430 ~~~~~v~~~a~~al~~l~~~~~~ 452 (721)
+.+..++..|+++|.+++...+.
T Consensus 316 s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 316 SKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp CSSHHHHHHHHHHHHHHHTTCCG
T ss_pred CCCHHHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999977544
No 84
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.04 E-value=8.3e-08 Score=79.80 Aligned_cols=216 Identities=15% Similarity=0.152 Sum_probs=159.6
Q ss_pred HhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHH
Q 004960 336 PPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVS 415 (721)
Q Consensus 336 ~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 415 (721)
..++..+...+.++-|-++.-|+..+..+++..++...+.+.+++-.+- +++....-.....++|.++..-|+
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~---ksEaIpltqeIa~a~G~la~i~Pe---- 103 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLK---KSEAIPLTQEIAKAFGQMAKEKPE---- 103 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH---HCCSHHHHHHHHHHHHHHHHHCHH----
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHh---hcccCchHHHHHHHHhHHHHhCHH----
Confidence 3567777778899999999999999999999888776665555443332 366667767888999999988753
Q ss_pred hhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhcc
Q 004960 416 HYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAF 495 (721)
Q Consensus 416 ~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~~~ 495 (721)
....++|.++....-.++.+|.+...+|..+....+.. +..++..+...+.+++..-|..+++.++.+ |++-
T Consensus 104 ~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l----~~~v~rdi~smltskd~~Dkl~aLnFi~al----Gen~ 175 (253)
T 2db0_A 104 LVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPML----MASIVRDFMSMLSSKNREDKLTALNFIEAM----GENS 175 (253)
T ss_dssp HHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHH----HHHHHHHHHHHTSCSSHHHHHHHHHHHHTC----CTTT
T ss_pred HHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHH----HHHHHHHHHHHhcCCChHHHHHHHHHHHHH----hccC
Confidence 55688999999888888999999999999998877653 466777888888988877777777766544 4433
Q ss_pred hhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCChhhHHHHHHHHHHHHH
Q 004960 496 IPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAG 575 (721)
Q Consensus 496 ~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~ 575 (721)
..|....+|.+..++ .|.+.-+|..+.++++.++.. ++ . +..++...+.-++|++..+...+-.+++.+.-
T Consensus 176 ~~yv~PfLprL~aLL---~D~deiVRaSaVEtL~~lA~~-np-k----lRkii~~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 176 FKYVNPFLPRIINLL---HDGDEIVRASAVEALVHLATL-ND-K----LRKVVIKRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp HHHHGGGHHHHHGGG---GCSSHHHHHHHHHHHHHHHTS-CH-H----HHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred ccccCcchHHHHHHH---cCcchhhhHHHHHHHHHHHHc-CH-H----HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 344444445454444 334556789999999999843 22 2 44556666677888888888888888888753
No 85
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.00 E-value=1.2e-06 Score=95.17 Aligned_cols=329 Identities=14% Similarity=0.109 Sum_probs=203.5
Q ss_pred HHHHHHHHHHHHccccCCCCCcchHHHHHHhcc---CCcHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCC
Q 004960 96 RRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQ---SEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDET 172 (721)
Q Consensus 96 r~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~---~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~l~~~~ 172 (721)
+-.++..+|.|-.. .+.+-+..|...+. ++++..+.+|+..+|-+...... +.+..+...+.++.
T Consensus 375 k~sA~aSLGlIh~g-----~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~-------~~~~lL~~~L~~~~ 442 (963)
T 4ady_A 375 KFTATASLGVIHKG-----NLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR-------DTTDYLKNIIVENS 442 (963)
T ss_dssp HHHHHHHHHHHTSS-----CTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH-------HHHHHHHHHHHHHS
T ss_pred HHHHHHHhhhhccC-----chHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH-------HHHHHHHHHHcCcc
Confidence 44455555555432 33457888888886 66788999999999999766542 34555555555412
Q ss_pred -------CHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcccchhhhH
Q 004960 173 -------SNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSV 245 (721)
Q Consensus 173 -------~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~ 245 (721)
++.+|..|+..|+...-...+. ..+..+.. .+.+++...+..|.-.++-+.-.... ...+
T Consensus 443 ~~~~~~~~~~ir~gAaLGLGla~~GS~~e-------ev~e~L~~----~L~dd~~~~~~~AalALGli~vGTgn--~~ai 509 (963)
T 4ady_A 443 GTSGDEDVDVLLHGASLGIGLAAMGSANI-------EVYEALKE----VLYNDSATSGEAAALGMGLCMLGTGK--PEAI 509 (963)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHHSTTCCCH-------HHHHHHHH----HHHTCCHHHHHHHHHHHHHHHTTCCC--HHHH
T ss_pred ccccccccHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHH----HHhcCCHHHHHHHHHHHhhhhcccCC--HHHH
Confidence 3678988988988765443221 12233333 44445555555666666655322211 2333
Q ss_pred HHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHH
Q 004960 246 KSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDT 325 (721)
Q Consensus 246 ~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~ 325 (721)
..++..+. +. .++.+|+.+...|+.+.-. +++.++.++..+ ... +++..|..+..++..
T Consensus 510 ~~LL~~~~----e~-~~e~vrR~aalgLGll~~g------~~e~~~~li~~L----~~~------~dp~vRygaa~algl 568 (963)
T 4ady_A 510 HDMFTYSQ----ET-QHGNITRGLAVGLALINYG------RQELADDLITKM----LAS------DESLLRYGGAFTIAL 568 (963)
T ss_dssp HHHHHHHH----HC-SCHHHHHHHHHHHHHHTTT------CGGGGHHHHHHH----HHC------SCHHHHHHHHHHHHH
T ss_pred HHHHHHHh----cc-CcHHHHHHHHHHHHhhhCC------ChHHHHHHHHHH----HhC------CCHHHHHHHHHHHHH
Confidence 44444433 22 2677887776666655421 122244444433 322 125566665555443
Q ss_pred HHHHcCc-cccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHh-hcCCCCHhHHHHHHHHHH
Q 004960 326 MALNLAK-HVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLG-ALRDPEQFVRGAASFALG 403 (721)
Q Consensus 326 l~~~~~~-~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~-~l~d~~~~vr~~a~~~l~ 403 (721)
..-..|+ ..+..++..+ ..+.+...|.+|+.++|.+.-+-++ .++.++. +.++.++.||..|..++|
T Consensus 569 AyaGTGn~~aIq~LL~~~---~~d~~d~VRraAViaLGlI~~g~~e--------~v~rlv~~L~~~~d~~VR~gAalALG 637 (963)
T 4ady_A 569 AYAGTGNNSAVKRLLHVA---VSDSNDDVRRAAVIALGFVLLRDYT--------TVPRIVQLLSKSHNAHVRCGTAFALG 637 (963)
T ss_dssp HTTTSCCHHHHHHHHHHH---HHCSCHHHHHHHHHHHHHHTSSSCS--------SHHHHTTTGGGCSCHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHh---ccCCcHHHHHHHHHHHHhhccCCHH--------HHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3333332 2333344443 3456778999999999998766432 2333444 345789999999999999
Q ss_pred HHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcC--CChhHHHHHH
Q 004960 404 QFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALEN--SPRNLQETCM 481 (721)
Q Consensus 404 ~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~--~~~~v~~~~l 481 (721)
.++...+. ..++..|....+|++..||..|+.+|+.+.....+...|.+..++..|.+...+ .+...+-.+.
T Consensus 638 li~aGn~~------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~ 711 (963)
T 4ady_A 638 IACAGKGL------QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGAC 711 (963)
T ss_dssp HHTSSSCC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHH
T ss_pred HhccCCCc------HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 99866542 356666777788999999999999999998777777778899999998888875 3555666665
Q ss_pred HHHHHH
Q 004960 482 SAIGSV 487 (721)
Q Consensus 482 ~~l~~l 487 (721)
-+.|.+
T Consensus 712 iAqGll 717 (963)
T 4ady_A 712 VAQGIM 717 (963)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
No 86
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.86 E-value=2.4e-05 Score=85.09 Aligned_cols=346 Identities=13% Similarity=0.090 Sum_probs=199.8
Q ss_pred hHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhC---CCCCHHHHHHHHHHHHHhhhhcCChh
Q 004960 119 LLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQ---DETSNRVRIAALKAIGSFLEFTNDGA 195 (721)
Q Consensus 119 ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~l~---~~~~~~vr~~a~~~l~~l~~~~~~~~ 195 (721)
++..-.+++.......+..|+-.+|-|..... ++.+..+...+. + .++.+|..|+.+++-+-....+
T Consensus 359 ~l~~~~~Wl~k~~~~~k~sA~aSLGlIh~g~~-------~~gl~~L~~yL~~~~s-~~~~ik~GAllaLGli~ag~~~-- 428 (963)
T 4ady_A 359 FIKANLPWLGKAQNWAKFTATASLGVIHKGNL-------LEGKKVMAPYLPGSRA-SSRFIKGGSLYGLGLIYAGFGR-- 428 (963)
T ss_dssp HHHHCHHHHHHCCTHHHHHHHHHHHHHTSSCT-------TTHHHHHTTTSTTSCC-SCHHHHHHHHHHHHHHTTTTTH--
T ss_pred hhhcchhhhhccchHHHHHHHHHhhhhccCch-------HHHHHHHHHhccccCC-CcHHHHHHHHHHHHHhcCCCcH--
Confidence 34333344443333456678888888765432 334555666665 4 6789999999999987654421
Q ss_pred hHHHHHhhHHHHHHHHHHHhhcCC--------HHHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHhhcCCCCChHHHH
Q 004960 196 EVVKFREFIPSILNVSRQCLASGE--------EDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRH 267 (721)
Q Consensus 196 ~~~~~~~~l~~ll~~l~~~l~~~~--------~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~ 267 (721)
..+..+.+ .+.+++ +.++..|+-.|+-..-.... +.+++.+...+.++ +...+.
T Consensus 429 ------~~~~lL~~----~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~------eev~e~L~~~L~dd--~~~~~~ 490 (963)
T 4ady_A 429 ------DTTDYLKN----IIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN------IEVYEALKEVLYND--SATSGE 490 (963)
T ss_dssp ------HHHHHHHH----HHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC------HHHHHHHHHHHHTC--CHHHHH
T ss_pred ------HHHHHHHH----HHcCccccccccccHHHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHhcC--CHHHHH
Confidence 12222223 333333 56777787788776432221 22333333333333 344554
Q ss_pred HHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcC-ccccHhHHHHHHhhh
Q 004960 268 QAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA-KHVFPPVFEFASVSC 346 (721)
Q Consensus 268 ~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~i~~~l~~~l 346 (721)
.|...++.+--... -..++..++..+.+.. ....++.+...|..+. ++ +...+.++..+.
T Consensus 491 ~AalALGli~vGTg--------n~~ai~~LL~~~~e~~------~e~vrR~aalgLGll~--~g~~e~~~~li~~L~--- 551 (963)
T 4ady_A 491 AAALGMGLCMLGTG--------KPEAIHDMFTYSQETQ------HGNITRGLAVGLALIN--YGRQELADDLITKML--- 551 (963)
T ss_dssp HHHHHHHHHHTTCC--------CHHHHHHHHHHHHHCS------CHHHHHHHHHHHHHHT--TTCGGGGHHHHHHHH---
T ss_pred HHHHHHhhhhcccC--------CHHHHHHHHHHHhccC------cHHHHHHHHHHHHhhh--CCChHHHHHHHHHHH---
Confidence 55444443321100 1123333333333221 2356777777766653 33 334555555543
Q ss_pred cCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHH
Q 004960 347 QNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILN 426 (721)
Q Consensus 347 ~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ 426 (721)
.+.+|..|++++.++|...-+.+.. ..+..++.. +.+|++..||..|..+||.+.-.-+ ..++.++.
T Consensus 552 ~~~dp~vRygaa~alglAyaGTGn~--~aIq~LL~~---~~~d~~d~VRraAViaLGlI~~g~~--------e~v~rlv~ 618 (963)
T 4ady_A 552 ASDESLLRYGGAFTIALAYAGTGNN--SAVKRLLHV---AVSDSNDDVRRAAVIALGFVLLRDY--------TTVPRIVQ 618 (963)
T ss_dssp HCSCHHHHHHHHHHHHHHTTTSCCH--HHHHHHHHH---HHHCSCHHHHHHHHHHHHHHTSSSC--------SSHHHHTT
T ss_pred hCCCHHHHHHHHHHHHHHhcCCCCH--HHHHHHHHH---hccCCcHHHHHHHHHHHHhhccCCH--------HHHHHHHH
Confidence 3678999999999888765554332 112222322 3357788999999999998764432 23455555
Q ss_pred hc-cCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhcchhhHHHHHHH
Q 004960 427 AL-EDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLEL 505 (721)
Q Consensus 427 ~l-~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~~ 505 (721)
.+ ++.++.||..++.||+.+....+ ...+++.|.++..+.+..||..|+.++|.+.....+...|.+.++...
T Consensus 619 ~L~~~~d~~VR~gAalALGli~aGn~------~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~ 692 (963)
T 4ady_A 619 LLSKSHNAHVRCGTAFALGIACAGKG------LQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKN 692 (963)
T ss_dssp TGGGCSCHHHHHHHHHHHHHHTSSSC------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHhccCCC------cHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHH
Confidence 43 46788999999999998753322 256777888888999999999999999988765555555667777766
Q ss_pred HHHHHhccCchhhhhHHHHHHHHHHH
Q 004960 506 LKIFMVLTNDEDLRSRARATELLGLV 531 (721)
Q Consensus 506 l~~~l~~~~~~~~~~~~~~~~~l~~l 531 (721)
+.+.+... .++...+-.+.-..|.+
T Consensus 693 L~~~~~dk-~~d~~~~fga~iAqGll 717 (963)
T 4ady_A 693 FLSVITNK-HQEGLAKFGACVAQGIM 717 (963)
T ss_dssp HHHHHHCS-SSCHHHHHHHHHHHHHH
T ss_pred HHHHHhcc-cccHHHHHHHHHHHHHH
Confidence 66666532 12223333344444444
No 87
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.78 E-value=4.4e-07 Score=79.35 Aligned_cols=186 Identities=16% Similarity=0.156 Sum_probs=146.5
Q ss_pred HHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHH-HhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccc
Q 004960 377 ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIV-SHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEIL 455 (721)
Q Consensus 377 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~ 455 (721)
+..+..+.+.++|.++.++..++.+|+.+....+.... ..++.+++.+++.+.+.+.+|...|..++..++...+-. .
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~-~ 110 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMG-S 110 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBC-H
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCC-H
Confidence 45678889999999999999999999999998755444 467899999999999999999999999999999876421 2
Q ss_pred cchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhh
Q 004960 456 PFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESV 535 (721)
Q Consensus 456 ~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~ 535 (721)
.-+..+...+..+..+++.-++..+.+.++.+ ......+.+...+.+++. +.+.+++..++.++..++..-
T Consensus 111 ~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl------kv~~~~~~V~~~l~sLl~---Skd~~vK~agl~~L~eia~~S 181 (265)
T 3b2a_A 111 KTFLKAAKTLVSLLESPDDMMRIETIDVLSKL------QPLEDSKLVRTYINELVV---SPDLYTKVAGFCLFLNMLNSS 181 (265)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC------CBSCCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC------CcccchHHHHHHHHHHHh---CCChhHHHHHHHHHHHhhccc
Confidence 34567888889999999999999999998877 233445678888888882 356678888898888887433
Q ss_pred chhhccCChHHHHHHHHhccCCCChhhHHHHHHHHHHHHH
Q 004960 536 GRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAG 575 (721)
Q Consensus 536 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~~l~~ 575 (721)
+ =...+..++..+-..++.+++.+++.++.++..+..
T Consensus 182 ~---D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils 218 (265)
T 3b2a_A 182 A---DSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALS 218 (265)
T ss_dssp S---SCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTT
T ss_pred C---CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 2 123445556666666778899999999888887754
No 88
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.78 E-value=9e-07 Score=81.74 Aligned_cols=185 Identities=13% Similarity=0.116 Sum_probs=142.9
Q ss_pred HhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHH---HHHh-hh
Q 004960 343 SVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPE---IVSH-YE 418 (721)
Q Consensus 343 ~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~-~~ 418 (721)
...+-+.+|+.+.+|+..+....+..++.+...++-+++.+.-.+.|.|+.|-..++..|..+...+... +.++ ..
T Consensus 52 ~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~ 131 (266)
T 2of3_A 52 MSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVS 131 (266)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence 3446677999999999999988887777777777777776666667899999999999999988766442 2233 36
Q ss_pred hHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhcchhh
Q 004960 419 SVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPY 498 (721)
Q Consensus 419 ~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~~~~~~ 498 (721)
.++|.|+..+.|+...||..+-..+..+....+. ..+++.+.+.+.+.+...|+.++..++.++...|-....+
T Consensus 132 ~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~------~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~~~~ 205 (266)
T 2of3_A 132 AFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP------LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISPLKS 205 (266)
T ss_dssp HHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH------HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGGGGG
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH------HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 7899999999999999999999988877655433 2466777888899999999999999999999998654333
Q ss_pred HHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhch
Q 004960 499 AERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGR 537 (721)
Q Consensus 499 ~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~ 537 (721)
+. +.|.+.+.+ +|.+..+|..|+.|+..+-..+|.
T Consensus 206 l~-~~~~ia~ll---~D~d~~VR~aAl~~lve~y~~~Gd 240 (266)
T 2of3_A 206 LS-VEKTVAPFV---GDKDVNVRNAAINVLVACFKFEGD 240 (266)
T ss_dssp GC-HHHHHGGGG---GCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred cc-chHHHHHHH---cCCCHHHHHHHHHHHHHHHHHhhH
Confidence 30 004343443 456778999999999998888875
No 89
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.75 E-value=2.6e-07 Score=88.90 Aligned_cols=188 Identities=11% Similarity=0.089 Sum_probs=140.2
Q ss_pred HHhhhcCCChhhHhHHHHHHHHHhhccHHHHHH-----hHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhH-----
Q 004960 342 ASVSCQNASPKYREAAVTAIGIISEGCAEWMKE-----KLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQP----- 411 (721)
Q Consensus 342 l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~-----~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~----- 411 (721)
+.+.+.|.+|+.|..|+..+..+....+..... .+..+.+.+.+.+.|.|..|...++.++..++...+.
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 346789999999999999998887765432211 1334456777888999999999999999999876543
Q ss_pred -HHHHhhhhHHHHHHHh-ccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q 004960 412 -EIVSHYESVLPCILNA-LEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAA 489 (721)
Q Consensus 412 -~~~~~~~~~l~~l~~~-l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~ 489 (721)
....+...++|.++.. +.+....++..+..++..++.... ....+++.+...+.+.++.++..++.++..+..
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~-----~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~ 168 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT-----SITQSVELVIPFFEKKLPKLIAAAANCVYELMA 168 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS-----SSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC-----cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 2334567888988865 888888999999999988876543 234566777788899999999999999999999
Q ss_pred Hhhhcc---hhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhch
Q 004960 490 AAEQAF---IPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGR 537 (721)
Q Consensus 490 ~~~~~~---~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~ 537 (721)
..|... .+.++.+++.+...+. +.+..+|..++.+++.+...+|+
T Consensus 169 ~fg~~~~~~k~~l~~i~~~l~k~l~---d~~~~VR~aA~~l~~~ly~~~G~ 216 (278)
T 4ffb_C 169 AFGLTNVNVQTFLPELLKHVPQLAG---HGDRNVRSQTMNLIVEIYKVTGN 216 (278)
T ss_dssp HHTTTTCCHHHHHHHHGGGHHHHHT---CSSHHHHHHHHHHHHHHHTC---
T ss_pred HhCCCcCCchhHHHHHHHHHHHHHh---CCcHHHHHHHHHHHHHHHHHhCc
Confidence 887443 2356667777777774 34567899999999999888875
No 90
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.73 E-value=6.4e-07 Score=87.12 Aligned_cols=290 Identities=13% Similarity=0.100 Sum_probs=153.3
Q ss_pred cCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhh
Q 004960 69 AKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTET 148 (721)
Q Consensus 69 ~~~~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~ 148 (721)
+.++..+-..+.-.++..+.+ ++..+|+..-..+..++.. ++ .---..+.+.+-++++++-.|..|+.+++.|...
T Consensus 59 ~~f~~~e~t~lf~~v~kl~~s-~d~~lKrLvYLyl~~~~~~--~~-e~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~ 134 (355)
T 3tjz_B 59 EHLGTTEATEAFFAMTKLFQS-NDPTLRRMCYLTIKEMSCI--AE-DVIIVTSSLTKDMTGKEDSYRGPAVRALCQITDS 134 (355)
T ss_dssp CCCCHHHHHHHHHHHHGGGGC-CCHHHHHHHHHHHHHHTTT--SS-CGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT
T ss_pred CCCchhHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhCCC--HH-HHHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH
Confidence 467766666777667777776 7999998887777777765 32 2236789999999999999999999999999643
Q ss_pred hhhcccccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHH
Q 004960 149 IGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFE 228 (721)
Q Consensus 149 ~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~ 228 (721)
..++.+.+.+.+++.| .++.||.+|+-|..+++...++ .+..+++.+.+.+.+.++-+...|+.
T Consensus 135 ------~m~~~l~~~lk~~L~d-~~pyVRk~A~l~~~kL~~~~pe---------~v~~~~~~l~~ll~d~n~~V~~~Al~ 198 (355)
T 3tjz_B 135 ------TMLQAIERYMKQAIVD-KVPSVSSSALVSSLHLLKCSFD---------VVKRWVNEAQEAASSDNIMVQYHALG 198 (355)
T ss_dssp ------TTHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHTTTCHH---------HHHTTHHHHHHHTTCSSHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHhccCHH---------HHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 3578899999999999 9999999999999988876422 22234555556788889999989999
Q ss_pred HHHHHhcCcccchhhhHHHHHHHHHHhhcCCCC-ChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCC
Q 004960 229 IFDELIESPAPLLGDSVKSIVHFSLEVSSSHNL-EPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEA 307 (721)
Q Consensus 229 ~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~ 307 (721)
.+.++....+.. +..+++.+. .... ++-.....+.++..++.... +.....+++.+.+++.+..
T Consensus 199 lL~ei~~~d~~a----~~kLv~~l~----~~~l~~~~~q~~llr~l~~~~~~d~-----~~~~~~~~~~l~~~L~~~~-- 263 (355)
T 3tjz_B 199 LLYHVRKNDRLA----VSKMISKFT----RHGLKSPFAYCMMIRVASRQLEDED-----GSRDSPLFDFIESCLRNKH-- 263 (355)
T ss_dssp HHHHHHTTCHHH----HHHHHHHHH----SSCCSCHHHHHHHHHHHTCC----------------------CCCCCSS--
T ss_pred HHHHHHhhchHH----HHHHHHHHh----cCCCcChHHHHHHHHHHHHhccccc-----hhhHHHHHHHHHHHHcCCC--
Confidence 998888765322 233333221 1111 23223333333322222110 0123455566666665433
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHcCccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhc
Q 004960 308 GEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGAL 387 (721)
Q Consensus 308 ~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l 387 (721)
..+--.|..++-.+.. .+...+......+...+.+++...|+.|+..+..++...|..+.. .-..+..++
T Consensus 264 -----~aVvyEa~k~I~~l~~-~~~~~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~----~n~~ie~li 333 (355)
T 3tjz_B 264 -----EMVVYEAASAIVNLPG-CSAKELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTA----CNLDLENLV 333 (355)
T ss_dssp -----HHHHHHHHHHHTC------------CCCTHHHHHHSSSSSSHHHHHHCC--------------------------
T ss_pred -----hHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHH----HHHHHHHHc
Confidence 2333334444433333 222233444556666788888999999999999999876655443 334566788
Q ss_pred CCCCHhHHHHHHHHHH
Q 004960 388 RDPEQFVRGAASFALG 403 (721)
Q Consensus 388 ~d~~~~vr~~a~~~l~ 403 (721)
+|+|..++.-|..+|-
T Consensus 334 ~d~n~sI~t~Aittll 349 (355)
T 3tjz_B 334 TDANRSIATLAITTLL 349 (355)
T ss_dssp ----------------
T ss_pred cCCcHhHHHHHHHHhh
Confidence 8999888877766543
No 91
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=98.71 E-value=9.8e-06 Score=90.62 Aligned_cols=449 Identities=9% Similarity=0.065 Sum_probs=220.3
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHhcC-CC----cHHHHHHHHhcC--CChhHHHHHHHHH------HHhhhhhhcCC
Q 004960 5 LELLLIQFLMPDNDARRQAEDQIKRLAKD-PQ----VVPALVQHLRTA--KTPNVRQLAAVLL------RKKITGHWAKL 71 (721)
Q Consensus 5 l~~ll~~~~s~d~~~r~~A~~~L~~~~~~-p~----~~~~l~~il~~~--~~~~vr~~a~~~l------~~~i~~~w~~~ 71 (721)
+..+++.+.|.-+++|+.|+..|....+. |+ +++.+++.|... ....-|.-++.++ .+.+...|.
T Consensus 135 l~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~~~d~~-- 212 (997)
T 1vsy_5 135 LVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGVVINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKLMTDYK-- 212 (997)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHGGGCHH--
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHHhcChH--
Confidence 56778888899999999999999876653 54 456677777551 2333344444332 122334444
Q ss_pred CHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhh
Q 004960 72 SPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQ 151 (721)
Q Consensus 72 ~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~ 151 (721)
....+-..++++... ..+.|++.+..+...+.....+...+..+-..+...+..++.. ...+......-.+....
T Consensus 213 ---~~~~~~~ali~~~~~-dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~-i~~~~~~~~~~~~~~r~ 287 (997)
T 1vsy_5 213 ---DIGRLIFLLIECCRV-NELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGT-INLQVEAVKLAKKKKRE 287 (997)
T ss_dssp ---HHHHHHHHHHHTCSC-SSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSS-TTSHHHHHHHHTTHHHH
T ss_pred ---HHHHHHHHHHHhCcC-CCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHH-HHHHHHHHHHHHHHHHH
Confidence 344555556665444 3566766666666666543222112211111111122212111 11122222222111111
Q ss_pred cccccHHHHHHHHHHhhCCCCC--HHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 004960 152 TFRPHFADMQALLLKCLQDETS--NRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEI 229 (721)
Q Consensus 152 ~~~~~~~~l~~~l~~~l~~~~~--~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~ 229 (721)
........+...+....+++.+ +.....++..+..+......+ .=|.++..+.+.+.++.+.+|..|+.+
T Consensus 288 ~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~~--------~~~~~v~~~~~~l~~dhp~~R~~a~~~ 359 (997)
T 1vsy_5 288 YYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLESK--------PDKRAVFSIISQISTKHPEIIHLVVKS 359 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSCC--------CCHHHHHHHHGGGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCCC--------CCHHHHHHHHHhhcCCCHHHHHHHHHH
Confidence 1122234455444555544356 777777777766555433222 223344555556777889999888877
Q ss_pred HHHHhcCc-------------------ccchh---hhHHHHHHHHHHhhc---------C-C------------------
Q 004960 230 FDELIESP-------------------APLLG---DSVKSIVHFSLEVSS---------S-H------------------ 259 (721)
Q Consensus 230 l~~l~~~~-------------------~~~~~---~~~~~l~~~~~~~~~---------~-~------------------ 259 (721)
+..+.... |..+. ..-+...+...+... + .
T Consensus 360 l~~il~~~k~~~~~~~d~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~yfid~~~~~Gwl~Wp~~~~vy~p~ 439 (997)
T 1vsy_5 360 LLSTCNKIISLSDYEYDITRAYKNEFNPSFVEILDTSTTSFPKTFTEEMNNFDNPKYFIDLRAYVGWLCWGRLMYVMSPK 439 (997)
T ss_dssp HTHHHHHHHHHHHHTTCGGGGSSSSCCCTTEEEEESCSTTTHHHHHHHHSCCSSCCCBCCSCCCSBTTBCCSEEEEECTT
T ss_pred HHHHHHHHHhhhcCCCcHHHhhccccCCCCceecCCCCccHHHHHHHHHhcccCCccceeCCCCCeEeeeCCceeEeCCC
Confidence 76554320 00000 000011111111100 0 0
Q ss_pred ----CCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHH----HHcC
Q 004960 260 ----NLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMA----LNLA 331 (721)
Q Consensus 260 ----~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~----~~~~ 331 (721)
+.++ ....+++.++.+. -+..+..++..+.+ |.+..+.++.... .++..+. +.++
T Consensus 440 ~~~l~~~~-~e~~i~~~f~~~~------------~~~~~~~l~~~l~q--e~~~~~~F~~~~v--~l~k~lf~l~~rn~~ 502 (997)
T 1vsy_5 440 ALKLNLRE-NELEVLKTAGHLL------------TREFLRDVTMNLVQ--DNETRGVFSSGNV--SFFSLVILLISSGFC 502 (997)
T ss_dssp CCCCCCCH-HHHHHHHHHHTTC------------CHHHHHHHHHHHHH--TTTTTCCCCHHHH--HHHHHHHHHHTTTTC
T ss_pred CCCCCCCH-HHHHHHHHHHhhc------------CHHHHHHHHHHHHh--hccccCccccchH--HHHHHHHHHHhcccc
Confidence 0011 0111111111100 12233333433432 2222333444443 3334333 5567
Q ss_pred ccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccH----HHHHHhHHHHHHHHHhhcC-CCCHhHHHHHHHHHHHHH
Q 004960 332 KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCA----EWMKEKLESVLHIVLGALR-DPEQFVRGAASFALGQFA 406 (721)
Q Consensus 332 ~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~----~~~~~~l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~ 406 (721)
+..++.+.+.+.....+++-....+|...++.+..+.+ +.....-+.+.|.+.+.+. +-.+.....=..++..+.
T Consensus 503 ~~~l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~ 582 (997)
T 1vsy_5 503 ELNMSDLFELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLP 582 (997)
T ss_dssp CCCGGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHh
Confidence 88889999999998888887788888888888887743 2222333344455555554 233333222111222222
Q ss_pred hhhhHHHHHhhhhHHHHHH--Hh---ccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCChhHHHHHH
Q 004960 407 EYLQPEIVSHYESVLPCIL--NA---LEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCM 481 (721)
Q Consensus 407 ~~~~~~~~~~~~~~l~~l~--~~---l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l 481 (721)
....+ .-++.++..|+ +. ..+........-+..|..++...+-.... .+.++..+. +.++...||+.+.
T Consensus 583 ~~~Dp---rR~~~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~-~~~~l~~~~--l~h~y~~VRe~Ig 656 (997)
T 1vsy_5 583 AVVDL---RRSKTFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPD-VGKLFDELV--FDHPYDQVRQAVA 656 (997)
T ss_dssp HHSCG---GGCHHHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCC-CHHHHHHCC--SCCSCHHHHHHHH
T ss_pred cCCCh---hhhHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhcccccc-HHHHHHHHH--hCCChHHHHHHHH
Confidence 22211 23456666662 21 12222223334456666666666554443 566776666 7888899999998
Q ss_pred HHHHHHHHHh
Q 004960 482 SAIGSVAAAA 491 (721)
Q Consensus 482 ~~l~~l~~~~ 491 (721)
.+++.+....
T Consensus 657 ~~L~~i~~~~ 666 (997)
T 1vsy_5 657 KLLTTLVQNQ 666 (997)
T ss_dssp HHHHHHHHTS
T ss_pred HHHHHHHHhh
Confidence 8887776553
No 92
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.67 E-value=2.3e-06 Score=79.00 Aligned_cols=197 Identities=10% Similarity=0.022 Sum_probs=149.4
Q ss_pred HhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhh---ccccc-hH
Q 004960 384 LGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGE---EILPF-LD 459 (721)
Q Consensus 384 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~---~~~~~-~~ 459 (721)
...+-+.++.-+..|+..|.......+......++-+++++.-.+.+.+..|...++..|..++..+.. .+.+| ..
T Consensus 52 ~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~ 131 (266)
T 2of3_A 52 MSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVS 131 (266)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence 344456688888888888887766655555555666788777667788999999999999999888754 35555 46
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhh
Q 004960 460 PLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRAR 539 (721)
Q Consensus 460 ~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 539 (721)
.+++.|..-+.++...+|+.+-.++..+...++. ..+++.+.+.+.. .+++.|..++.+++.+....|..
T Consensus 132 ~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~------~~v~~~l~~g~ks---KN~R~R~e~l~~l~~li~~~G~~- 201 (266)
T 2of3_A 132 AFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP------LKMTPMLLDALKS---KNARQRSECLLVIEYYITNAGIS- 201 (266)
T ss_dssp HHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH------HHHHHHHHHGGGC---SCHHHHHHHHHHHHHHHHHHCSG-
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH------HHHHHHHHHHHcc---CCHHHHHHHHHHHHHHHHhcCCC-
Confidence 8889999999999999999999888777665432 3355666665543 34678889999999998888753
Q ss_pred ccCChHHHH---HHHHhccCCCChhhHHHHHHHHHHHHHHcccCcccchhhhHHHHHh
Q 004960 540 MEPILPPFV---EAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFS 594 (721)
Q Consensus 540 ~~~~~~~i~---~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~ 594 (721)
. ...+ +.+...+.|.+..+|.+|+.++..+-...|+.+-.+++.+-|.-.+
T Consensus 202 ~----~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k~lg~L~~~~~~ 255 (266)
T 2of3_A 202 P----LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAAGRMADKDKS 255 (266)
T ss_dssp G----GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHHHHCCCCHHHHH
T ss_pred c----cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCHHHHH
Confidence 1 2245 7777889999999999999999999999999888777665555443
No 93
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.64 E-value=6.6e-06 Score=72.07 Aligned_cols=218 Identities=11% Similarity=0.016 Sum_probs=156.5
Q ss_pred hHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHH-HhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHH
Q 004960 337 PVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMK-EKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVS 415 (721)
Q Consensus 337 ~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~-~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 415 (721)
..+..+...+.+.|...+..++.+++.+....++... ..++.+++.++..+.+++.+|--.|+.|++.+.+..+.. .+
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~-~~ 111 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMG-SK 111 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBC-HH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCC-HH
Confidence 3566667778899999999999999999998755443 457899999999999999999999999999999887532 24
Q ss_pred hhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhh--
Q 004960 416 HYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQ-- 493 (721)
Q Consensus 416 ~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~-- 493 (721)
.+..+..++...+.++++-.+..++..++.+ ........+++.+..++.+.++.++..++.++..++...++
T Consensus 112 ~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl------kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~ 185 (265)
T 3b2a_A 112 TFLKAAKTLVSLLESPDDMMRIETIDVLSKL------QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSG 185 (265)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC------CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCC
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHhCcC------CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHH
Confidence 5677888888888988888999999998877 34445678888999999888999999999999998876653
Q ss_pred cchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhcc-CCCChhhHHHHHH
Q 004960 494 AFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGF-GLEFSELREYTHG 568 (721)
Q Consensus 494 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l-~~~~~~~~~~~~~ 568 (721)
.+...+.. +..+++. ++..++..++..+-.+...-=++...+.+-.+...+-+.. ..+.|.+|..|-.
T Consensus 186 i~~~I~~e----I~elL~~---eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka~~ 254 (265)
T 3b2a_A 186 HLTLILDE----IPSLLQN---DNEFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLVYREGAPIIRLKAKK 254 (265)
T ss_dssp CGGGTTTT----HHHHHTC---SCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHGGGCSSCHHHHHHHHH
T ss_pred HHHHHHHH----HHHHHcC---CCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHHHHHHhcCChhHHHHHHH
Confidence 23333333 3444433 3556777888877766521101122222223333332322 3456777766643
No 94
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.64 E-value=6e-07 Score=87.33 Aligned_cols=306 Identities=11% Similarity=0.101 Sum_probs=158.6
Q ss_pred HHHHHHHHHHHHHHHcc-ccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCC
Q 004960 93 APVRRASANVVSIIAKY-AVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDE 171 (721)
Q Consensus 93 ~~vr~~~~~~l~~i~~~-~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~l~~~ 171 (721)
...|..+..++..+... .+|+.....+++.+..++.+++...|..+...+..+.+...+ .+ -+++.+.+=+++
T Consensus 42 ~kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e----~i-Lv~Nsl~kDl~~- 115 (355)
T 3tjz_B 42 RKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAED----VI-IVTSSLTKDMTG- 115 (355)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSC----GG-GGHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHH----HH-HHHHHHHhhcCC-
Confidence 44566777777766543 232222456788888899999999999998888887766222 12 345666777788
Q ss_pred CCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcccchhhhHHHHHHH
Q 004960 172 TSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHF 251 (721)
Q Consensus 172 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~ 251 (721)
+++-+|..|+.+++++..- ++++.+...+.+++.+.++-+++.|+-+...+....|.....+++.+
T Consensus 116 ~N~~iR~lALRtL~~I~~~-----------~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~~~~l--- 181 (355)
T 3tjz_B 116 KEDSYRGPAVRALCQITDS-----------TMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNEA--- 181 (355)
T ss_dssp SCHHHHHHHHHHHHHHCCT-----------TTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHTTHHHH---
T ss_pred CcHhHHHHHHHHHhcCCCH-----------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHH---
Confidence 8999999999999988652 24555666677799999999999999999988888776655444433
Q ss_pred HHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcC
Q 004960 252 SLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA 331 (721)
Q Consensus 252 ~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~ 331 (721)
.+.+.+. +..+..+|+.++..+.+..+.. +..++ +.+.... .
T Consensus 182 -~~ll~d~--n~~V~~~Al~lL~ei~~~d~~a------~~kLv----~~l~~~~------------------------l- 223 (355)
T 3tjz_B 182 -QEAASSD--NIMVQYHALGLLYHVRKNDRLA------VSKMI----SKFTRHG------------------------L- 223 (355)
T ss_dssp -HHHTTCS--SHHHHHHHHHHHHHHHTTCHHH------HHHHH----HHHHSSC------------------------C-
T ss_pred -HHHhcCC--CccHHHHHHHHHHHHHhhchHH------HHHHH----HHHhcCC------------------------C-
Confidence 3334333 5677778877777666432211 11111 1111100 0
Q ss_pred ccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhH
Q 004960 332 KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQP 411 (721)
Q Consensus 332 ~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 411 (721)
. .-.+-+..+..+....++.....-..+++.+...+++.++.|...|++++-.+.... .
T Consensus 224 ---------------~-----~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~-~ 282 (355)
T 3tjz_B 224 ---------------K-----SPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCS-A 282 (355)
T ss_dssp ---------------S-----CHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC-------
T ss_pred ---------------c-----ChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCC-H
Confidence 0 001111122222222221111223577888899999999999999999988765421 1
Q ss_pred HHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCChhHHHHHHHHH
Q 004960 412 EIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAI 484 (721)
Q Consensus 412 ~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l 484 (721)
..+...+..+...+.++++.+|..|+..|..++...+..+.. .-..+.+++++++.++..-|+.++
T Consensus 283 ---~~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~----~n~~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 283 ---KELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTA----CNLDLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp --------CCCTHHHHHHSSSSSSHHHHHHCC-----------------------------------------
T ss_pred ---HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHH----HHHHHHHHccCCcHhHHHHHHHHh
Confidence 223334455556677788889999999999998877665543 334466677888888777766554
No 95
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=98.60 E-value=0.00074 Score=69.98 Aligned_cols=198 Identities=12% Similarity=0.136 Sum_probs=127.3
Q ss_pred CcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHcccc-C
Q 004960 35 QVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLE-HSAPVRRASANVVSIIAKYAV-P 112 (721)
Q Consensus 35 ~~~~~l~~il~~~~~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i~~~ll~~l~~e-~~~~vr~~~~~~l~~i~~~~~-~ 112 (721)
+.+..|.+=+.+.+-.+-|+.|+..||..-++++. +.-..-...+++.|.++ .|..+-+.+-+++..+...+. +
T Consensus 21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~----~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~ 96 (651)
T 3grl_A 21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRL----EVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEE 96 (651)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTT----HHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC---
T ss_pred hHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHH----HhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcc
Confidence 35677777777777788888888888887655432 22222234455555544 344444445555544332111 0
Q ss_pred C------------C--------CCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccccH---HHHHHHHHHhhC
Q 004960 113 A------------G--------EWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHF---ADMQALLLKCLQ 169 (721)
Q Consensus 113 ~------------~--------~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~---~~l~~~l~~~l~ 169 (721)
. + +-++-++.|++++++.+...|..++++|..++...++.....+ +.-++.+...|.
T Consensus 97 ~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~ 176 (651)
T 3grl_A 97 EVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLA 176 (651)
T ss_dssp -----------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGG
T ss_pred cccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHh
Confidence 0 0 1245689999999999999999999999999988776444333 356788899999
Q ss_pred CCCCHHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCc
Q 004960 170 DETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESP 237 (721)
Q Consensus 170 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~ 237 (721)
| +...+|..++..|..+.....+-.....+.+.++.++..+..--..+.-.+...|+.++..++..+
T Consensus 177 d-~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N 243 (651)
T 3grl_A 177 D-SREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNN 243 (651)
T ss_dssp C-SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTC
T ss_pred C-chHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcC
Confidence 9 899999999999999988654433344455667777776533111122345556666666666543
No 96
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.50 E-value=3.5e-06 Score=81.00 Aligned_cols=179 Identities=9% Similarity=0.069 Sum_probs=135.5
Q ss_pred CCcHHHHHHHHHHHHHHHcCc-----c---ccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccH------HHHHHhHH
Q 004960 312 DLAPDRAAAEVIDTMALNLAK-----H---VFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCA------EWMKEKLE 377 (721)
Q Consensus 312 ~~~~~~~a~~~l~~l~~~~~~-----~---~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~------~~~~~~l~ 377 (721)
.|..|..|.+.+..+....+. . .+..+.+.+...+.+.|......++.++..++..+. ........
T Consensus 22 ~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~ 101 (278)
T 4ffb_C 22 LWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLIS 101 (278)
T ss_dssp SHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHH
Confidence 388898888777666544321 1 133345566677889999999999999999987542 34455677
Q ss_pred HHHHHHHh-hcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhcc--
Q 004960 378 SVLHIVLG-ALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEI-- 454 (721)
Q Consensus 378 ~i~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~-- 454 (721)
.+++.++. ++.|..+.+|..+..++..+++... ....+++.+...+.+.++.++..++..|..++..++...
T Consensus 102 ~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~-----~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~ 176 (278)
T 4ffb_C 102 TWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT-----SITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVN 176 (278)
T ss_dssp HHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS-----SSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC-----cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCC
Confidence 88887775 5899999999999999888776532 234567788889999999999999999999999986543
Q ss_pred -ccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhcc
Q 004960 455 -LPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAF 495 (721)
Q Consensus 455 -~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~~~ 495 (721)
.+.++.+++.+..++.+.++.||..+..+++.+....|+..
T Consensus 177 ~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~~ 218 (278)
T 4ffb_C 177 VQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNS 218 (278)
T ss_dssp HHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-----
T ss_pred chhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcch
Confidence 34677888889999999999999999999999988877543
No 97
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.46 E-value=3.6e-08 Score=82.52 Aligned_cols=121 Identities=16% Similarity=0.241 Sum_probs=89.5
Q ss_pred cHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHH
Q 004960 335 FPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIV 414 (721)
Q Consensus 335 ~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 414 (721)
-+...+.+...++++++..|..++.+++.+... . ++.+...++|+++.||..|+++|+.+..
T Consensus 10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~----------~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~------- 71 (131)
T 1te4_A 10 HSSGLVPRGSHMADENKWVRRDVSTALSRMGDE----------A-FEPLLESLSNEDWRIRGAAAWIIGNFQD------- 71 (131)
T ss_dssp -----------CCSSCCCSSSSCCSSTTSCSST----------T-HHHHHHGGGCSCHHHHHHHHHHHGGGCS-------
T ss_pred ccccHHHHHHHhcCCCHHHHHHHHHHHHHhCch----------H-HHHHHHHHcCCCHHHHHHHHHHHHhcCC-------
Confidence 355667777788999999999999888876542 1 3677788899999999999999998764
Q ss_pred HhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 004960 415 SHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGS 486 (721)
Q Consensus 415 ~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~ 486 (721)
+..++.|.+.+.|+++.||..++++|+.+.. +..++.|...++++++.+|..+..+++.
T Consensus 72 ---~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 ---ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp ---HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 2457777888888999999999999998741 3466778888888899999999888754
No 98
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=98.26 E-value=8e-06 Score=91.33 Aligned_cols=435 Identities=11% Similarity=0.094 Sum_probs=226.7
Q ss_pred CCCcHHHHHHHHhcC--CChhHHHHHHHHHHHhhh---hhhcCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 004960 33 DPQVVPALVQHLRTA--KTPNVRQLAAVLLRKKIT---GHWAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIA 107 (721)
Q Consensus 33 ~p~~~~~l~~il~~~--~~~~vr~~a~~~l~~~i~---~~w~~~~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~ 107 (721)
+++++..++..+..+ .+..-+..-+.+++..++ +.+.. ...+.++..+-. |..+.++.-.+.+|++++-+.
T Consensus 461 ~~~~~~~l~~~l~qe~~~~~~F~~~~v~l~k~lf~l~~rn~~~---~~l~~l~~~~e~-L~~~~dk~~qr~aaEi~aGll 536 (997)
T 1vsy_5 461 TREFLRDVTMNLVQDNETRGVFSSGNVSFFSLVILLISSGFCE---LNMSDLFELCES-YYNKDDKASMIMSVEIVAGLV 536 (997)
T ss_dssp CHHHHHHHHHHHHHTTTTTCCCCHHHHHHHHHHHHHHTTTTCC---CCGGGHHHHHHH-TCCSSCHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhhccccCccccchHHHHHHHHHHHhcccch---hhHHHHHHHHHH-HhccccHHHHHHHHHHHHHHH
Confidence 478888888776543 223334445555555553 33332 233444444444 444578888999999999987
Q ss_pred cc--ccCC----CCCcchHHHHHHhcc-CCcHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHh---h-CCCC---C
Q 004960 108 KY--AVPA----GEWPDLLPFLFQFSQ-SEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKC---L-QDET---S 173 (721)
Q Consensus 108 ~~--~~~~----~~~~~ll~~l~~~l~-~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~---l-~~~~---~ 173 (721)
+. .+|. ..|.-+.|.+...+. +-+++....-..++..++...+.. -...++..+... + .+.. .
T Consensus 537 ~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~~~~Dpr---R~~~L~e~l~~~~~~l~~~~~ssf~ 613 (997)
T 1vsy_5 537 CGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLPAVVDLR---RSKTFFCHFINADGMFDRESDAATH 613 (997)
T ss_dssp SCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHHHSCGG---GCHHHHHHHTCCCCCCCCCSSCCCC
T ss_pred hccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhcCCChh---hhHHHHHHHHHhhcccCCCCCcHHH
Confidence 53 3332 246678888888888 466666666666777766654321 223444444221 1 1101 1
Q ss_pred HHHHHHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCc--cc------------
Q 004960 174 NRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESP--AP------------ 239 (721)
Q Consensus 174 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~--~~------------ 239 (721)
...|...+..+..-..|.-. . ...++..+. +..+...+|......|..+.... +.
T Consensus 614 ~~~rl~ll~~~l~~~~wr~~--------~-~~~~l~~~~--l~h~y~~VRe~Ig~~L~~i~~~~~~~~~~~~~~~l~~~~ 682 (997)
T 1vsy_5 614 QTSKIYMLRSILMSMEFRAP--------D-VGKLFDELV--FDHPYDQVRQAVAKLLTTLVQNQSNPSISDPTTLLEAER 682 (997)
T ss_dssp CCSSHHHHHHHHHHHTTSSC--------C-CHHHHHHCC--SCCSCHHHHHHHHHHHHHHHHTSCCCCBSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccc--------c-HHHHHHHHH--hCCChHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHhhc
Confidence 12344444433333333211 1 111222221 44556667766666665554332 11
Q ss_pred ---------------chhhhHHHHHHHHHHhhcCC-C------CChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHH-
Q 004960 240 ---------------LLGDSVKSIVHFSLEVSSSH-N------LEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQV- 296 (721)
Q Consensus 240 ---------------~~~~~~~~l~~~~~~~~~~~-~------~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~- 296 (721)
.+...+..+++.+-.+-... + ...+....+-.++.++......... ..+.+.++.
T Consensus 683 ~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~s~y~~~~kTvl~wl~~~l~~~~~--~~l~~~~~~~ 760 (997)
T 1vsy_5 683 NDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQFIKTDYFYRTSTIFYWIKEMARGPNK--VLLVPYLVDY 760 (997)
T ss_dssp SCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCCSTTTTTSHHHHHHHHHHHHHHHHSSGGGH--HHHHHHHTTT
T ss_pred cccccccCccccCcchHHHHHHHHHHHHHHhhhcccccCccccchHHHHHHHHHHHHHHHHHhcCCCc--cchhhhhHHH
Confidence 11111111221111111100 0 0011111111122222221111000 001222222
Q ss_pred HHhhhccCCCCCCCCCCcHHHH-HHHHHHHHHHHc-CccccHhHHHHHHhhhc-CCChhhHhHHHHHHHHHhhccH-HHH
Q 004960 297 MCPLLAESNEAGEDDDLAPDRA-AAEVIDTMALNL-AKHVFPPVFEFASVSCQ-NASPKYREAAVTAIGIISEGCA-EWM 372 (721)
Q Consensus 297 l~~~l~~~~~~~~~~~~~~~~~-a~~~l~~l~~~~-~~~~~~~i~~~l~~~l~-~~~~~~r~~al~~l~~i~~~~~-~~~ 372 (721)
++|.+.+-.+..++ .+.... +..++..++... ++...+.++..+.+... +++| .|.+++..+..+.-..- -.-
T Consensus 761 llP~ll~l~~~~d~--~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~ 837 (997)
T 1vsy_5 761 VLPFLIGLVKHKDV--CALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLT 837 (997)
T ss_dssp TTTTTCTTSSCSHH--HHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHhhcCcH--HHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcC
Confidence 44444433322211 122233 445566665432 24456667777766666 6799 99999888776654210 000
Q ss_pred HHhHHHHHHHHHhhcCCCC-HhHHHHHHHHHHHHHhhh-hHHHHHhhhhHHHHHHHhccC------------CChHHHHH
Q 004960 373 KEKLESVLHIVLGALRDPE-QFVRGAASFALGQFAEYL-QPEIVSHYESVLPCILNALED------------ESDEVKEK 438 (721)
Q Consensus 373 ~~~l~~i~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~-~~~~~~~~~~~l~~l~~~l~~------------~~~~v~~~ 438 (721)
......+...+..+|.|+. ..||..|..+|+.+.... +.. ....++..+.+.+.. .....|..
T Consensus 838 ~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~---~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~ 914 (997)
T 1vsy_5 838 EEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQ---PLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHG 914 (997)
T ss_dssp TTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHH---HHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchh---hHHHHHHHHHHHHhhcccccccccccchHHHHHHH
Confidence 0122578889999999999 999999999999997665 311 111333333333311 01146678
Q ss_pred HHHHHHHHHHhhhhcc--ccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhc
Q 004960 439 SYYALAAFCEDMGEEI--LPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQA 494 (721)
Q Consensus 439 a~~al~~l~~~~~~~~--~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~~ 494 (721)
+.-+|+.++.+.+-.+ .+++++++..|.....++. .++..+=.+++..-....+.
T Consensus 915 aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~-~i~~tvk~tlseFkrTH~D~ 971 (997)
T 1vsy_5 915 NVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSG-MTGNAAKNTISEFKKVRADT 971 (997)
T ss_dssp HHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCS-SHHHHTHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCC-chHHHHHHHHHHHHhccchh
Confidence 8899999999998776 6799999999988887754 37777777777655554443
No 99
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.25 E-value=0.0055 Score=66.79 Aligned_cols=159 Identities=12% Similarity=0.106 Sum_probs=96.8
Q ss_pred hHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccccHHHHH-HHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhH
Q 004960 119 LLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQ-ALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEV 197 (721)
Q Consensus 119 ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~l~-~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 197 (721)
++|.+ +.+++++++.|..|+.+++.++++....-.-....++ +++..++.| ++..||.+|+.+|.++..........
T Consensus 36 i~Pll-~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D-~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 36 ILPVL-KDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTD-NNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp THHHH-HHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTC-SCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHH-HHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCC-CCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 55655 4588999999999999999999753221111123344 556678888 99999999999999987653211111
Q ss_pred -HHHHhhHHHHHHHHHHHhh---cC-------C-------HHHHHHHHHHHHHHhcCcccchh-----hhHHHHHHHHHH
Q 004960 198 -VKFREFIPSILNVSRQCLA---SG-------E-------EDVAVIAFEIFDELIESPAPLLG-----DSVKSIVHFSLE 254 (721)
Q Consensus 198 -~~~~~~l~~ll~~l~~~l~---~~-------~-------~~~~~~a~~~l~~l~~~~~~~~~-----~~~~~l~~~~~~ 254 (721)
..-.+.++.+...+..... .. . +++...++.++..+++.....+. ..++.++..+..
T Consensus 114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~ 193 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS 193 (684)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence 1113567777776644221 10 1 12334566677777665543332 223444444332
Q ss_pred hhcCCCCChHHHHHHHHHHHHHHHHhHh
Q 004960 255 VSSSHNLEPNTRHQAIQIISWLAKYKYN 282 (721)
Q Consensus 255 ~~~~~~~~~~~r~~a~~~l~~l~~~~~~ 282 (721)
......+++..++.++..+.+..+.
T Consensus 194 ---~~~~~~~v~~~a~~~L~~ls~dn~~ 218 (684)
T 4gmo_A 194 ---ADIAPQDIYEEAISCLTTLSEDNLK 218 (684)
T ss_dssp ---HCCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred ---cCCCcHHHHHHHHHHHHHHhccCHH
Confidence 2334578999999999999876544
No 100
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=98.16 E-value=3.9e-05 Score=70.04 Aligned_cols=195 Identities=12% Similarity=0.009 Sum_probs=123.3
Q ss_pred HHHHHhhcCCCCH--hHHHHHHHHHHHHHhhhhHHHHHh-hhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhcccc
Q 004960 380 LHIVLGALRDPEQ--FVRGAASFALGQFAEYLQPEIVSH-YESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILP 456 (721)
Q Consensus 380 ~~~l~~~l~d~~~--~vr~~a~~~l~~l~~~~~~~~~~~-~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~ 456 (721)
+|.+++.|.++++ .++..|++++..++...++..... -.+.+|.|++.|.++++.++..|+++|.++....++.-..
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~ 89 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLE 89 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 5677888887777 899999999999987654332222 2578999999999999999999999999998643221111
Q ss_pred c-hHHHHHHHHHhhc-CCChhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHh----ccC---------chhhhhH
Q 004960 457 F-LDPLMGKLLAALE-NSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMV----LTN---------DEDLRSR 521 (721)
Q Consensus 457 ~-~~~i~~~l~~~l~-~~~~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~----~~~---------~~~~~~~ 521 (721)
. -.+.++.|.+++. ..+..+++.+..++..+....... ......-+|.|...+. ... ..+..++
T Consensus 90 I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k-~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~ 168 (233)
T 3tt9_A 90 VAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK-NLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIF 168 (233)
T ss_dssp HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGH-HHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHH
T ss_pred HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhH-HHHHhccHHHHHHHHhccccCCcccccccccccchHHHH
Confidence 1 1367788888887 468899999998888886432211 1222334455443221 000 1133566
Q ss_pred HHHHHHHHHHHHhh--chhhccC---ChHHHHHHHHhccCC--CChhhHHHHHHHHHHHHH
Q 004960 522 ARATELLGLVAESV--GRARMEP---ILPPFVEAAISGFGL--EFSELREYTHGFFSNIAG 575 (721)
Q Consensus 522 ~~~~~~l~~l~~~~--~~~~~~~---~~~~i~~~l~~~l~~--~~~~~~~~~~~~l~~l~~ 575 (721)
..+..|+..++..- +++.+.. .++.++..+-....+ .+...++.++.++.+++.
T Consensus 169 ~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~ 229 (233)
T 3tt9_A 169 YNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY 229 (233)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence 77888888886321 1223322 245555555444432 245567777777777754
No 101
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=98.15 E-value=0.0001 Score=67.29 Aligned_cols=151 Identities=14% Similarity=-0.016 Sum_probs=104.6
Q ss_pred HHHHHHhhhcCCCh--hhHhHHHHHHHHHhhccHHHHHHh-HHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHH
Q 004960 338 VFEFASVSCQNASP--KYREAAVTAIGIISEGCAEWMKEK-LESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIV 414 (721)
Q Consensus 338 i~~~l~~~l~~~~~--~~r~~al~~l~~i~~~~~~~~~~~-l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 414 (721)
.++.+.+.+.+++. ..+..|..++..++.+.++.-... -...+|.++..|+++++.++..|+++|.+++...+..-.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 46667777888877 777788888988886544322222 135679999999999999999999999999875332211
Q ss_pred H-hhhhHHHHHHHhcc-CCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhc----------------CCChhH
Q 004960 415 S-HYESVLPCILNALE-DESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALE----------------NSPRNL 476 (721)
Q Consensus 415 ~-~~~~~l~~l~~~l~-~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~----------------~~~~~v 476 (721)
. .-.+.+|.|++.|. ..+..++..++.+|.++....... ......-++.|...+. ..+..+
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k-~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v 167 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK-NLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDI 167 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGH-HHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhH-HHHHhccHHHHHHHHhccccCCcccccccccccchHHH
Confidence 1 22588999999997 467889999999999886432111 1122233444544331 125688
Q ss_pred HHHHHHHHHHHHH
Q 004960 477 QETCMSAIGSVAA 489 (721)
Q Consensus 477 ~~~~l~~l~~l~~ 489 (721)
++.+..|+.++..
T Consensus 168 ~~na~~~L~nLss 180 (233)
T 3tt9_A 168 FYNVTGCLRNMSS 180 (233)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998875
No 102
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=98.12 E-value=7.1e-05 Score=74.49 Aligned_cols=211 Identities=13% Similarity=0.131 Sum_probs=137.3
Q ss_pred ChHHHHHHHHHHHHHHHHhHhhhhhcCChH-HHHHHHHhhhc-c-CCCCCCCC-CCcHHHHHHHHHHHHHHHcCccccHh
Q 004960 262 EPNTRHQAIQIISWLAKYKYNSLKKHKLVI-PILQVMCPLLA-E-SNEAGEDD-DLAPDRAAAEVIDTMALNLAKHVFPP 337 (721)
Q Consensus 262 ~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~-~il~~l~~~l~-~-~~~~~~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~ 337 (721)
..++|.-|.-.|..+.+..+....+..... .+.--++-.+. + -.|-..|. --.+|++++++++.+ ..++++ + .
T Consensus 187 ~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp~e-~-~ 263 (800)
T 3oc3_A 187 EWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLIGP-N-D 263 (800)
T ss_dssp SHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTSCS-C-C
T ss_pred chhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-HhCChh-H-H
Confidence 678999999888888876543211111111 22111111111 1 11111111 246799999999999 777765 3 3
Q ss_pred HHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhh
Q 004960 338 VFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY 417 (721)
Q Consensus 338 i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 417 (721)
++..+...+..+.|+.|++++..+..+.+-.. .++.+++.++.+|.|.+..||..|+.+|.-++ .+ ..+
T Consensus 264 IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~-----~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA--~p----~~l 332 (800)
T 3oc3_A 264 IIEQLVGFLDSGDWQVQFSGLIALGYLKEFVE-----DKDGLCRKLVSLLSSPDEDIKLLSAELLCHFP--IT----DSL 332 (800)
T ss_dssp HHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCC-----CHHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC--CS----STH
T ss_pred HHHHHHhhcCCCCeeehhhhHHHHHHHHHHHH-----HHHHHHHHHHhhcCCcccHHHHHHHHHhhhhc--ch----hhH
Confidence 44444456688899999999999999833222 27899999999999999999999999999888 22 345
Q ss_pred hhHHHHHHHhccCCC--hHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q 004960 418 ESVLPCILNALEDES--DEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVA 488 (721)
Q Consensus 418 ~~~l~~l~~~l~~~~--~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~ 488 (721)
+.++..+...|.+-+ ..........|+.++........ .+.+++.|.+.+.+.-.+||.+++.++..+.
T Consensus 333 ~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~--dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 333 DLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSI--PPERLKDIFPCFTSPVPEVRTSILNMVKNLS 403 (800)
T ss_dssp HHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCC--CSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccccc--ChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Confidence 556666665555432 22334456666666665432111 1288889999999999999999999887665
No 103
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=98.08 E-value=0.0023 Score=66.40 Aligned_cols=336 Identities=11% Similarity=0.092 Sum_probs=190.3
Q ss_pred HHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 004960 200 FREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKY 279 (721)
Q Consensus 200 ~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~ 279 (721)
..+.++.+.+-+.. ..-.+.|..|+..|..+++..+.-+. ..-++.++..++++..+.++-..+++++..+.
T Consensus 19 ~~etI~~L~~Rl~~---~tl~eDRR~Av~~Lk~~sk~y~~~Vg---~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~-- 90 (651)
T 3grl_A 19 EAETIQKLCDRVAS---STLLDDRRNAVRALKSLSKKYRLEVG---IQAMEHLIHVLQTDRSDSEIIGYALDTLYNII-- 90 (651)
T ss_dssp HHHHHHHHHHHHHH---CCSHHHHHHHHHHHHHTTTTTTTHHH---HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHH--
T ss_pred hhhHHHHHHHHHhh---ccchhHHHHHHHHHHHHHHHhHHHhh---hhhHHHHHHHHhcccccHHHHHHHHHHHHHHh--
Confidence 35567777775443 24567889999999988876544333 22233344444444445555555555554433
Q ss_pred hHhhhhhcCChHHHHHHHHhhhccCCCCCCCC--CCcHHHHHHHHHHHHHHHcCccccHhHHHHHHhhhcCCChhhHhHH
Q 004960 280 KYNSLKKHKLVIPILQVMCPLLAESNEAGEDD--DLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAA 357 (721)
Q Consensus 280 ~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~--~~~~~~~a~~~l~~l~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~a 357 (721)
+..+++++++ .......+.+.-+.+... +.-++.+...+++.+...|..+
T Consensus 91 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~------~~~i~~Ll~lL~~~df~vR~~a 142 (651)
T 3grl_A 91 ----------------------SNDEEEEVEENSTRQSEDLGSQFTEIFIKQ------QENVTLLLSLLEEFDFHVRWPG 142 (651)
T ss_dssp ----------------------CCC--------------CHHHHHHHHHHHS------THHHHHHHHHTTCCCHHHHHHH
T ss_pred ----------------------CCCCcccccccccccchHHHHHHHHHHHcC------CccHHHHHHHhcCccHHHHHHH
Confidence 2111110000 000011122222222211 3446667777889999999999
Q ss_pred HHHHHHHhhccHHHHHHhH---HHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHH--hhhhHHHHHHHhccCCC
Q 004960 358 VTAIGIISEGCAEWMKEKL---ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVS--HYESVLPCILNALEDES 432 (721)
Q Consensus 358 l~~l~~i~~~~~~~~~~~l---~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~--~~~~~l~~l~~~l~~~~ 432 (721)
++++..+..+.+......+ +.-++.++..|+|+...+|..++..|..++..-+ .+++ .+++.++.|++.+....
T Consensus 143 lqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~-~iQklVAFEnaFe~Lf~Ii~~Eg 221 (651)
T 3grl_A 143 VKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNG-AIQKIVAFENAFERLLDIITEEG 221 (651)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCH-HHHHHHHHhccHHHHHHHHHhcC
Confidence 9999999998887665553 3678999999999999999999999999998763 4555 35788999998887654
Q ss_pred h----HHHHHHHHHHHHHHHhhhhccccchH--HHHHHHHHhhcCCC------hhHHHH---HHHHHHHHHHHhhh--cc
Q 004960 433 D----EVKEKSYYALAAFCEDMGEEILPFLD--PLMGKLLAALENSP------RNLQET---CMSAIGSVAAAAEQ--AF 495 (721)
Q Consensus 433 ~----~v~~~a~~al~~l~~~~~~~~~~~~~--~i~~~l~~~l~~~~------~~v~~~---~l~~l~~l~~~~~~--~~ 495 (721)
. .|...++..+.++++.-... +.++- ..++.|.+++...+ .....+ ++.++..++...+. .-
T Consensus 222 ~~~Ggivv~DCL~ll~nLLr~N~sN-Q~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t 300 (651)
T 3grl_A 222 NSDGGIVVEDCLILLQNLLKNNNSN-QNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGAT 300 (651)
T ss_dssp GGGSHHHHHHHHHHHHHHHTTCHHH-HHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHH
T ss_pred CCccchhHHHHHHHHHHHHhcCHHH-HHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 3 67788899999988654211 11111 12223333343221 111222 34444444332111 00
Q ss_pred hh-----hHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhch--hhcc-------CChHHHHHHHHhccCC-CCh
Q 004960 496 IP-----YAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGR--ARME-------PILPPFVEAAISGFGL-EFS 560 (721)
Q Consensus 496 ~~-----~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~--~~~~-------~~~~~i~~~l~~~l~~-~~~ 560 (721)
.. +-..+++.+..++-...- ...++..++.+++.+.+.-.. +.|. +--+.++..++..+++ ...
T Consensus 301 ~~nQ~~~~~~g~l~~Ll~ll~~~~~-p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~ 379 (651)
T 3grl_A 301 SSCQKAMFQCGLLQQLCTILMATGV-PADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPF 379 (651)
T ss_dssp HHHHHHHHHTTHHHHHHHHHTCSSC-CHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCH
T ss_pred HHHHHHHHHCCCHHHHHHHHccCCC-CHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccH
Confidence 00 111144555555433221 235677888888887643221 1121 1124466655565554 357
Q ss_pred hhHHHHHHHHHHHH
Q 004960 561 ELREYTHGFFSNIA 574 (721)
Q Consensus 561 ~~~~~~~~~l~~l~ 574 (721)
++|-++..|+..+.
T Consensus 380 ~lR~Aa~~cl~ay~ 393 (651)
T 3grl_A 380 VLRCAVLYCFQCFL 393 (651)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 78888888888775
No 104
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=98.07 E-value=3.3e-05 Score=76.76 Aligned_cols=215 Identities=17% Similarity=0.104 Sum_probs=139.1
Q ss_pred HHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHH------H-HhHHH-HHHHHHhhcC----CC-CHhHHHHHHHHHHH
Q 004960 338 VFEFASVSCQNASPKYREAAVTAIGIISEGCAEWM------K-EKLES-VLHIVLGALR----DP-EQFVRGAASFALGQ 404 (721)
Q Consensus 338 i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~------~-~~l~~-i~~~l~~~l~----d~-~~~vr~~a~~~l~~ 404 (721)
+.+.+...+-++.|..|++|..++..+....+... . ...-. ++-..+..+. |. -..||++++++||.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 77777778889999999999999999886543110 0 00111 1112233332 32 35799999999999
Q ss_pred HHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCChhHHHHHHHHH
Q 004960 405 FAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAI 484 (721)
Q Consensus 405 l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l 484 (721)
+ ..+++. -.++..++..+..+.++||..++-.|.-+ .+-+.. ++.+++.+...+.+.+.+||..+.+++
T Consensus 255 L-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL----~DLL~~-Ld~Vv~aVL~GL~D~DDDVRAVAAetL 323 (800)
T 3oc3_A 255 I-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYL----KEFVED-KDGLCRKLVSLLSSPDEDIKLLSAELL 323 (800)
T ss_dssp H-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHT----GGGCCC-HHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred H-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHH----HHHHHH-HHHHHHHHHhhcCCcccHHHHHHHHHh
Confidence 9 887764 25566666677788899999999999877 222223 899999999999999999999998888
Q ss_pred HHHHHHhhhcchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCChhhHH
Q 004960 485 GSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELRE 564 (721)
Q Consensus 485 ~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~ 564 (721)
.-++ ....++.++..+=..+...+| -....+..+..++.+... ++. ...-+.+++.+...++.+-+.||.
T Consensus 324 iPIA------~p~~l~~LL~iLWd~L~~LDD-LSASTgSVMdLLAkL~s~-p~~--a~~dp~LVPRL~PFLRHtITSVR~ 393 (800)
T 3oc3_A 324 CHFP------ITDSLDLVLEKCWKNIESEEL-ISVSKTSNLSLLTKIYRE-NPE--LSIPPERLKDIFPCFTSPVPEVRT 393 (800)
T ss_dssp TTSC------CSSTHHHHHHHHHHHHHTCCS-CCTTHHHHHHHHHHHHHH-CTT--CCCCSGGGGGTGGGGTCSSHHHHH
T ss_pred hhhc------chhhHHHHHHHHHHHhhhhcc-cchhhHHHHHHHHHHHcC-Ccc--cccChHHHHHHHhhhcCCcHHHHH
Confidence 7766 123455566555555544322 112234456666666532 111 111125556666667777777888
Q ss_pred HHHHHHHHH
Q 004960 565 YTHGFFSNI 573 (721)
Q Consensus 565 ~~~~~l~~l 573 (721)
+++.++..+
T Consensus 394 AVL~TL~tf 402 (800)
T 3oc3_A 394 SILNMVKNL 402 (800)
T ss_dssp HHHHHTTTC
T ss_pred HHHHHHHHH
Confidence 777766554
No 105
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.02 E-value=7.7e-06 Score=68.16 Aligned_cols=87 Identities=25% Similarity=0.248 Sum_probs=72.1
Q ss_pred HHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhh
Q 004960 339 FEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYE 418 (721)
Q Consensus 339 ~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 418 (721)
++.+.+.+++++|..|..++.+++.+.. +..++.+...++|+++.||..|+++|+.+.. +
T Consensus 44 ~~~L~~~L~d~~~~vR~~A~~aL~~~~~----------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~ 103 (131)
T 1te4_A 44 FEPLLESLSNEDWRIRGAAAWIIGNFQD----------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------E 103 (131)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHGGGCS----------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------H
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------H
Confidence 3666777889999999999999998864 2446677777889999999999999998763 2
Q ss_pred hHHHHHHHhccCCChHHHHHHHHHHHH
Q 004960 419 SVLPCILNALEDESDEVKEKSYYALAA 445 (721)
Q Consensus 419 ~~l~~l~~~l~~~~~~v~~~a~~al~~ 445 (721)
..++.|.+.++++++.||..++.+|.+
T Consensus 104 ~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 104 RVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 567788888899999999999998864
No 106
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=97.82 E-value=9.6e-05 Score=69.63 Aligned_cols=145 Identities=13% Similarity=0.156 Sum_probs=113.3
Q ss_pred cCChHHHHHHHHhccCCCChhhHHH-HHHHHHHHHHHcccCcccchhhhHHHHHhhccCCCCCccCCCCCccccccCCCC
Q 004960 541 EPILPPFVEAAISGFGLEFSELREY-THGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGG 619 (721)
Q Consensus 541 ~~~~~~i~~~l~~~l~~~~~~~~~~-~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (721)
..+++++++.++...+...|+.|+. ++.+++.++..+|..+.+++|.++..+..+.- ..|+.+.
T Consensus 68 ~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe~TL------~MI~~df--------- 132 (321)
T 1w9c_A 68 ENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTL------NMINKDF--------- 132 (321)
T ss_dssp HHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHH------HHHSSTT---------
T ss_pred HHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH------HHHhccc---------
Confidence 3456788888877777666777744 88999999999999999999999999886531 0111100
Q ss_pred CCCCchhhhhccccceeeecchhhhHHHHHHHHHHHHHHccccccc----hHHHHHHHHHhcccCCChhHHHHHHHHHHH
Q 004960 620 VSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAP----FLEESLKILVRHASYFHEDVRYQAVFALKN 695 (721)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~ 695 (721)
+..+|.|..-...+..+..++...+.. .+..+++.+.+..+|.+.+|-..+..++-.
T Consensus 133 -------------------~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ 193 (321)
T 1w9c_A 133 -------------------EEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFT 193 (321)
T ss_dssp -------------------TCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred -------------------ccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Confidence 223678999999999999998877543 366788889999999999999999999999
Q ss_pred HHHHHHHhcccCCcchhHHHHHhhcC
Q 004960 696 ILTAAHAIFQSHNVSLCYHFFLLSCL 721 (721)
Q Consensus 696 l~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (721)
+++.+.+ .+..+...|++|+++.|
T Consensus 194 ll~n~~~--~~~~~~~Fy~~fy~~il 217 (321)
T 1w9c_A 194 LLQNVAQ--EEAAAQSFYQTYFCDIL 217 (321)
T ss_dssp HHHHHHH--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHhc--ChHHHHHHHHHHHHHHH
Confidence 9999976 23567889999988753
No 107
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=97.67 E-value=0.011 Score=64.51 Aligned_cols=301 Identities=11% Similarity=0.054 Sum_probs=180.9
Q ss_pred HHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccC---CChHHHHHHHHHHHHHH
Q 004960 371 WMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALED---ESDEVKEKSYYALAAFC 447 (721)
Q Consensus 371 ~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~---~~~~v~~~a~~al~~l~ 447 (721)
.....++-+.|.+..++.+.+..+...+..++..++.-.|....-.++.++..+...|.. ..+.-...++.+|..++
T Consensus 332 ~~~~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~ 411 (799)
T 1vsy_4 332 CHEEIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVI 411 (799)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHH
Confidence 444556778888888899999999999999999999876622224556777777777665 33444456677777777
Q ss_pred Hhh--hhccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhh-h-------------------------------
Q 004960 448 EDM--GEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAE-Q------------------------------- 493 (721)
Q Consensus 448 ~~~--~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~-~------------------------------- 493 (721)
..+ +....+|+..++..+++-+..+++.--..++..+..++...+ .
T Consensus 412 r~lv~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s~ipi~d~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 491 (799)
T 1vsy_4 412 RFIVMDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAAFIPIQDLTGEDDYISFESDTLPLVQQHFYHIKCGES 491 (799)
T ss_dssp HHHTTSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHTSCBCCCCCCCTTCCHHHHTHHHHHHHHHHHHTTCC
T ss_pred HHHhcCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHhccccccCCcchhhhhhhhhhhhhhhhhhhhccccc
Confidence 665 234567888999999999988888766777787877766432 0
Q ss_pred --------------------cchhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHh
Q 004960 494 --------------------AFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAIS 553 (721)
Q Consensus 494 --------------------~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~ 553 (721)
.|..+...++..+..+++.. .+..+......++..+...++++.|...+..+.+.+..
T Consensus 492 ~~~~~~d~~~~~~~~~~sT~~f~~~v~~f~drvf~llen~--~Ee~l~~~l~~~~~~l~~~lS~~if~~~l~k~~~fv~~ 569 (799)
T 1vsy_4 492 SKTFRVDDELLNNAFKASTTVFQSMLKVYVEKIFQLVDVD--LEDSLVTKINQTTMILQESMDDKIFNYFASLLNRNFWS 569 (799)
T ss_dssp SSSCCCCTTHHHHHHHHHTSTHHHHHHHHHHHHHHHTTSC--CCTHHHHHHHHHHHHHHHTBCHHHHHHHHHHHHHHHHS
T ss_pred cccccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 12223333444444444431 12222223334555555566665555555555555544
Q ss_pred ccCCCChhhHHHHHHH----HHHHHHHcccCcccchhhhHHHHHhhccCC--CCCccCCCCCccccccCCCCCCCCchhh
Q 004960 554 GFGLEFSELREYTHGF----FSNIAGVLEDGFAQYLPLVVPLAFSSCNLD--DGSAVDIDGSDDENINGFGGVSSDDEAH 627 (721)
Q Consensus 554 ~l~~~~~~~~~~~~~~----l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (721)
..... ..+.+... ++.++..-++. +..++|.+...+... .+... .. .+ .+
T Consensus 570 n~~~~---a~~~v~~L~~~~~~a~~~~~P~~----~~~~~p~l~~~i~~~i~~ga~s-~r----------s~--~e---- 625 (799)
T 1vsy_4 570 NDSFK---EKDPNYELVTIPLAALVRRNNGL----SKELVRTLLFHIKEQIKRGAGS-VR----------ST--SE---- 625 (799)
T ss_dssp CSCCC---SSSCCTHHHHHHHHHHHHHCGGG----HHHHHHHHHHHHHHHHHTTTTC-SC----------CS--SS----
T ss_pred hhhhh---HHHHHHHHHHHHHHHHHHhCHHH----HHHHHHHHHHHHHHHHhccccc-cc----------cc--cc----
Confidence 33321 22222222 56666665553 455555555443311 11000 00 00 00
Q ss_pred hhccccceeeecchhhhHHHHHHHHHHHHHHccccccchHHHHHHHHHhccc-CCChhHHHHHHHHHHHHHHHHHHhccc
Q 004960 628 CERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVRHAS-YFHEDVRYQAVFALKNILTAAHAIFQS 706 (721)
Q Consensus 628 ~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~vr~~a~~~l~~l~~~~~~~~~~ 706 (721)
+ .+.-..-.--+.+++.++...|+.+.+|-+++++.+..++. ..+..+-..+...+.+++.+.-...+.
T Consensus 626 ---------~-~~~D~~L~w~l~iL~~~v~~~g~~lL~y~deL~~il~~~~~~~k~~~~~~~~~~ll~~lL~sLt~~yp~ 695 (799)
T 1vsy_4 626 ---------I-QQRDVKLVLYLTALNDVLRNCHESLLEYSDELITFMKYLYDNVTNPPLDVITSIVIHSALATLCTTEIT 695 (799)
T ss_dssp ---------C-CTTTHHHHHHHHHHHHHHTTTGGGGGTTHHHHHHHHHHHHHSCCCHHHHHHHTTHHHHHHHHHHCCBCC
T ss_pred ---------c-CcchHHHHHHHHHHHHHHhcCcHHHHccHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhhheeec
Confidence 0 00001224456778888888899999999999998887764 456666688999999999888776554
Q ss_pred C
Q 004960 707 H 707 (721)
Q Consensus 707 ~ 707 (721)
+
T Consensus 696 d 696 (799)
T 1vsy_4 696 D 696 (799)
T ss_dssp C
T ss_pred c
Confidence 3
No 108
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=97.58 E-value=0.073 Score=52.75 Aligned_cols=327 Identities=13% Similarity=0.133 Sum_probs=173.3
Q ss_pred HHHHHHHHHHHhcC-CCcHHHHHHHHhc-CCChhHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHHHHHHhhcCCHHHHH
Q 004960 20 RRQAEDQIKRLAKD-PQVVPALVQHLRT-AKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEHSAPVRR 97 (721)
Q Consensus 20 r~~A~~~L~~~~~~-p~~~~~l~~il~~-~~~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i~~~ll~~l~~e~~~~vr~ 97 (721)
--+....|.+.... ++-...-..|+.. ..++..+++|+..+-+.++ .+| +..+.-.+.++.+.. |.+..||.
T Consensus 10 LY~~~~~L~da~dk~~~~~~~y~~Il~~~kg~~k~K~LaaQ~I~kffk----~FP-~l~~~Ai~a~lDLcE-Ded~~IR~ 83 (507)
T 3u0r_A 10 LYRNYGILADATEQVGQHKDAYQVILDGVKGGTKEKRLAAQFIPKFFK----HFP-ELADSAINAQLDLCE-DEDVSIRR 83 (507)
T ss_dssp HHHHHHHHHHTGGGGGGGHHHHHHHHHGGGSCHHHHHHHHHHHHHHGG----GCG-GGHHHHHHHHHHHHT-CSSHHHHH
T ss_pred HHHHhhHhhhccccccccHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh----hCh-hhHHHHHHHHHHHHh-cccHHHHH
Confidence 33444455444432 2222223333332 3479999999988766554 443 355555666777766 68999999
Q ss_pred HHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCCHHHH
Q 004960 98 ASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVR 177 (721)
Q Consensus 98 ~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr 177 (721)
.+...+-.+++. ...+.+...|.++++++++......-.+|..+.+..+.. .+..++.. .. . ++..+|
T Consensus 84 qaik~Lp~~ck~----~~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk~---tl~~lf~~---i~-~-~~e~~R 151 (507)
T 3u0r_A 84 QAIKELPQFATG----ENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKMDAKG---TLGGLFSQ---IL-Q-GEDIVR 151 (507)
T ss_dssp HHHHHGGGGCCT----TCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHHH---HHHHHHHH---HH-H-SCHHHH
T ss_pred HHHHhhHHHhhh----hhhhhHHHHHHHHHhccchHHHHHHHHHHHHHHhcChHH---HHHHHHHH---Hc-c-cchHHH
Confidence 888888877764 135778999999999988877777777777776544321 12222222 22 2 357899
Q ss_pred HHHHHHHHHhhhhcCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCcccchhhhHHHHHHHHHHhhc
Q 004960 178 IAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSS 257 (721)
Q Consensus 178 ~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~ 257 (721)
..+++.|..-+......... .+.-..+...+.+.+++-..+.....+.+|..+--... . .-...++..+.+.+.
T Consensus 152 er~lkFi~~kl~~l~~~~l~---~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t--~-~g~qeLv~ii~eQa~ 225 (507)
T 3u0r_A 152 ERAIKFLSTKLKTLPDEVLT---KEVEELILTESKKVLEDVTGEEFVLFMKILSGLKSLQT--V-SGRQQLVELVAEQAD 225 (507)
T ss_dssp HHHHHHHHHHGGGSCTTTSC---HHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHTSGGGSS--H-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhcchhhcc---HHHHHHHHHHHHHHhccccHHHHHHHHHHHHhcccccC--c-hHHHHHHHHHHHHHh
Confidence 99999886544333221111 11222244455556766666665555555533321111 1 112344554444321
Q ss_pred C-CC---CChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcC--
Q 004960 258 S-HN---LEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA-- 331 (721)
Q Consensus 258 ~-~~---~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~-- 331 (721)
- .. .+.+.-...+.++....-..........|+.-+...++|.+..-.+.+++++ .+-....++..++...+
T Consensus 226 L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~~kIlP~l~~L~e~~~~~~--~kL~LLK~lAE~s~~~~~~ 303 (507)
T 3u0r_A 226 LEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTLTTPVEGLD--IQLEVLKLLAEMSSFCGDM 303 (507)
T ss_dssp TTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHHHHHTGGGTTCCCCC--CCC--HHHHHHHHHHHHHTTCCCC
T ss_pred ccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHhhccchhhccccccchH--HHHHHHHHHHHHccCCCcc
Confidence 1 11 1333222333222222111111111224566677777887665543222222 33344455566665555
Q ss_pred ---ccccHhHHHHHHhhhcCC-----------------ChhhHhHHHHHHHHHhhccHHHH
Q 004960 332 ---KHVFPPVFEFASVSCQNA-----------------SPKYREAAVTAIGIISEGCAEWM 372 (721)
Q Consensus 332 ---~~~~~~i~~~l~~~l~~~-----------------~~~~r~~al~~l~~i~~~~~~~~ 372 (721)
.+.++.+++.+..++--+ ++..-++.+.++..++...++.+
T Consensus 304 e~a~~~l~~iy~~L~~ymP~~p~~~~~~~~~~~~~p~l~fS~vECLLy~fH~L~~k~P~~l 364 (507)
T 3u0r_A 304 EKLETNLRKLFDKLLEYMPLPPEEAENGENAGNEEPKLQFSYVECLLYSFHQLGRKLPDFL 364 (507)
T ss_dssp TTHHHHHHHHHHHHHTTSCCCC--------------CCCHHHHHHHHHHHHHHHTTCTHHH
T ss_pred chHHHHHHHHHHHHHHHCCCCcccccccccccccCcccchhHHHHHHHHHHHHhhhChhhh
Confidence 235566666666553211 34455777888888887777654
No 109
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=97.58 E-value=0.00061 Score=74.28 Aligned_cols=153 Identities=15% Similarity=0.200 Sum_probs=92.3
Q ss_pred HHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHH--hhhhHHHHH-HHhccCCChHHHHHHHHHHHHHHHhhhhcc
Q 004960 378 SVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVS--HYESVLPCI-LNALEDESDEVKEKSYYALAAFCEDMGEEI 454 (721)
Q Consensus 378 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~--~~~~~l~~l-~~~l~~~~~~v~~~a~~al~~l~~~~~~~~ 454 (721)
.+.|.+ +.|+++++..|..|+++|+.++... .... ..++++..+ ...|.|++..||..|+++|++++...+..+
T Consensus 35 ~i~Pll-~~L~S~~~~~r~~A~~al~~l~~~~--~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~ 111 (684)
T 4gmo_A 35 KILPVL-KDLKSPDAKSRTTAAGAIANIVQDA--KCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADF 111 (684)
T ss_dssp TTHHHH-HHHSSSCCSHHHHHHHHHHHHTTSH--HHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred hHHHHH-HHcCCCCHHHHHHHHHHHHHHHcCc--HHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchH
Confidence 455544 4588999999999999999999753 2333 235666655 556889999999999999999987654332
Q ss_pred c---------cchHHHHHHHHHhhcCC-------C-------hhHHHHHHHHHHHHHHHhhhcchhhH-HHHHHHHHHHH
Q 004960 455 L---------PFLDPLMGKLLAALENS-------P-------RNLQETCMSAIGSVAAAAEQAFIPYA-ERVLELLKIFM 510 (721)
Q Consensus 455 ~---------~~~~~i~~~l~~~l~~~-------~-------~~v~~~~l~~l~~l~~~~~~~~~~~~-~~i~~~l~~~l 510 (721)
. +.+..++......+... . ..+.+.++.++..++....+.+.... ...+|.+...+
T Consensus 112 ~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L 191 (684)
T 4gmo_A 112 CVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRL 191 (684)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHH
Confidence 2 22223333222222221 1 12334566677676665444332221 23455555554
Q ss_pred hccCchhhhhHHHHHHHHHHHHH
Q 004960 511 VLTNDEDLRSRARATELLGLVAE 533 (721)
Q Consensus 511 ~~~~~~~~~~~~~~~~~l~~l~~ 533 (721)
...+.....++..+..|+..+..
T Consensus 192 ~~~~~~~~~v~~~a~~~L~~ls~ 214 (684)
T 4gmo_A 192 ISADIAPQDIYEEAISCLTTLSE 214 (684)
T ss_dssp HHHCCSCHHHHHHHHHHHHHHHT
T ss_pred HhcCCCcHHHHHHHHHHHHHHhc
Confidence 33222234567788888888863
No 110
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=97.55 E-value=0.06 Score=53.33 Aligned_cols=267 Identities=13% Similarity=0.142 Sum_probs=155.7
Q ss_pred cHHHHHHHHHHHHHHHcCccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHh
Q 004960 314 APDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQF 393 (721)
Q Consensus 314 ~~~~~a~~~l~~l~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~ 393 (721)
..++-|...+......+++ .-...++.....+++++..+|..|+..+..++.. .+++.+...|.++|..+++.
T Consensus 43 k~K~LaaQ~I~kffk~FP~-l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~QlLqtdd~~ 115 (507)
T 3u0r_A 43 KEKRLAAQFIPKFFKHFPE-LADSAINAQLDLCEDEDVSIRRQAIKELPQFATG------ENLPRVADILTQLLQTDDSA 115 (507)
T ss_dssp HHHHHHHHHHHHHGGGCGG-GHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHHHTTCCCHH
T ss_pred HHHHHHHHHHHHHHhhChh-hHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHHHHhccchH
Confidence 3455566666666666654 4456677777788999999999999888888765 45788899999999988888
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhc-cccchH-HHHHHHHHhhcC
Q 004960 394 VRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEE-ILPFLD-PLMGKLLAALEN 471 (721)
Q Consensus 394 vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~-~~~~~~-~i~~~l~~~l~~ 471 (721)
-+..+-++|-.+...-+. ..+..++..+.. .+..+|..++..|..-+...+.. +..-.+ -++..+.+++.+
T Consensus 116 E~~~V~~sL~sllk~Dpk---~tl~~lf~~i~~----~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~D 188 (507)
T 3u0r_A 116 EFNLVNNALLSIFKMDAK---GTLGGLFSQILQ----GEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLED 188 (507)
T ss_dssp HHHHHHHHHHHHHHHCHH---HHHHHHHHHHHH----SCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhcChH---HHHHHHHHHHcc----cchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhcc
Confidence 888888888777665432 223333333333 45789999888887666555433 223333 344556666654
Q ss_pred CChhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHhcc---CchhhhhHHHHHHHHHHHHHhhchh-hccCChHHH
Q 004960 472 SPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLT---NDEDLRSRARATELLGLVAESVGRA-RMEPILPPF 547 (721)
Q Consensus 472 ~~~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~---~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~~~~~i 547 (721)
-...--.-.++.++.+ .+.+. .+-.+++++++....... +..|.....+.+.|+..-.--+.+. .-..++.-+
T Consensus 189 VT~~EF~L~m~lL~~l--kl~~t-~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~ 265 (507)
T 3u0r_A 189 VTGEEFVLFMKILSGL--KSLQT-VSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYF 265 (507)
T ss_dssp CCHHHHHHHHHHHHTS--GGGSS-HHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHH
T ss_pred ccHHHHHHHHHHHHhc--ccccC-chHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHH
Confidence 4322111222222111 01111 133456667666654332 1112233345555554433222211 112234444
Q ss_pred HHHHHhccCCC-----ChhhHHHHHHHHHHHHHHcc--cCcccchhhhHHHHHhhcc
Q 004960 548 VEAAISGFGLE-----FSELREYTHGFFSNIAGVLE--DGFAQYLPLVVPLAFSSCN 597 (721)
Q Consensus 548 ~~~l~~~l~~~-----~~~~~~~~~~~l~~l~~~~~--~~~~~~l~~i~~~ll~~~~ 597 (721)
...++..++.= ..+.+-..+.+++.++...| +.-...++.+...|+..+-
T Consensus 266 ~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~~L~~ymP 322 (507)
T 3u0r_A 266 CEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKLLEYMP 322 (507)
T ss_dssp HHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHHHTTSC
T ss_pred HHhhccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHCC
Confidence 55555555421 12367789999999999998 3445677777777776654
No 111
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=97.46 E-value=0.0037 Score=55.65 Aligned_cols=172 Identities=16% Similarity=0.117 Sum_probs=115.4
Q ss_pred ChhHHHHHHHHhcCC---ChHHHHHHHHHHHHHhcCCCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhcCCCHHHHH
Q 004960 1 MAQSLELLLIQFLMP---DNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQ 77 (721)
Q Consensus 1 m~~~l~~ll~~~~s~---d~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~vr~~a~~~l~~~i~~~w~~~~~~~~~ 77 (721)
|.+-+.++++.+..- =..+-+.|...+..+. .+.+..+..-|.+++..++|..|+.+|... . . .++..+
T Consensus 35 ~~~~~~~~~~~~~~~~~gf~~~~~~a~~~~~~~~--~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~----~-~~~~L~ 106 (240)
T 3l9t_A 35 MKQYVARLEKDFSLIEHGFKEEEQRALTDYKSND--GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S----K-DKEILI 106 (240)
T ss_dssp HHHHHHHHHHHHTC-----CHHHHHHHHHHHHSC--HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T----T-SHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhCC--HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c----C-cHHHHH
Confidence 455566666665432 2233333333333222 244556666676776789999999877655 2 1 233333
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccccH
Q 004960 78 LVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHF 157 (721)
Q Consensus 78 ~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~ 157 (721)
.+ -..+..+.+..||..++.+++.++....|+ ..++.+.....+++..+|..|.....-.+.. ..+....
T Consensus 107 ~i----r~~va~D~~WrVre~lA~a~~~~~~~~~pe----~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~--~~~k~dp 176 (240)
T 3l9t_A 107 FM----RDEVSKDNNWRVQEVLAKAFDEFCKKIEYK----KALPIIDEWLKSSNLHTRRAATEGLRIWTNR--PYFKENP 176 (240)
T ss_dssp HH----HHTGGGCSCHHHHHHHHHHHHHHHHHHCTT----TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS--TTTTTCH
T ss_pred HH----HHHhCCCCCccHHHHHHHHHHHHHHhcCHH----HHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc--chhhcCH
Confidence 33 233566789999999999999988633232 3788899999999999999988887654432 2334556
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhc
Q 004960 158 ADMQALLLKCLQDETSNRVRIAALKAIGSFLEFT 191 (721)
Q Consensus 158 ~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~ 191 (721)
+.+++++.....| ++.-||.+..+.|..+....
T Consensus 177 ~~ll~iL~~L~~D-~s~yVrKSVan~LrD~SK~~ 209 (240)
T 3l9t_A 177 NEAIRRIADLKED-VSEYVRKSVGNALRDISKKF 209 (240)
T ss_dssp HHHHHHHHTTTTC-SCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCC-hHHHHHHHHHHHHHHHhhhC
Confidence 7788888888888 99999999999998887754
No 112
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=97.23 E-value=0.0023 Score=57.04 Aligned_cols=142 Identities=13% Similarity=0.128 Sum_probs=105.0
Q ss_pred cHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHh-hcCCCCHhHHHHHHHHHHHHHhhhhHHH
Q 004960 335 FPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLG-ALRDPEQFVRGAASFALGQFAEYLQPEI 413 (721)
Q Consensus 335 ~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 413 (721)
.+.+++......+++.-..|..|+.+++.. . ..+.+++.+.+ .-.|+++.||+.++.+++.++....+
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~p-- 137 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEY-- 137 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCT--
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCH--
Confidence 355667777777888889999999988877 3 22456777776 55699999999999999988863222
Q ss_pred HHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhh
Q 004960 414 VSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQ 493 (721)
Q Consensus 414 ~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~ 493 (721)
+..++.+..-..|++..||..|+..+.-.+.. .......+.+++.+.+...+++..||..+-++|..+....++
T Consensus 138 ----e~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~--~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd 211 (240)
T 3l9t_A 138 ----KKALPIIDEWLKSSNLHTRRAATEGLRIWTNR--PYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPD 211 (240)
T ss_dssp ----TTTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS--TTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred ----HHHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc--chhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHH
Confidence 23566777778999999999888877643321 223445567888888888888999999998888877765443
No 113
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=97.02 E-value=0.15 Score=55.68 Aligned_cols=114 Identities=16% Similarity=0.134 Sum_probs=78.6
Q ss_pred hHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCC--CCCHHHHHHHHHHHHHhhhhcCChhh
Q 004960 119 LLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQD--ETSNRVRIAALKAIGSFLEFTNDGAE 196 (721)
Q Consensus 119 ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~l~~--~~~~~vr~~a~~~l~~l~~~~~~~~~ 196 (721)
++|.+...+.+.+......+..++..++--.|....-.++.++..+...|+. -..++-..++++++..++...-...
T Consensus 340 l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv~~~- 418 (799)
T 1vsy_4 340 FLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIVMDK- 418 (799)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHTTST-
T ss_pred HHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHhcCc-
Confidence 4555556666777776677777777777644422223567777777777755 4566766788899988776543321
Q ss_pred HHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 004960 197 VVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIE 235 (721)
Q Consensus 197 ~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~ 235 (721)
.++.+++.++..+...++.+|+.....+++++..++.
T Consensus 419 --~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s 455 (799)
T 1vsy_4 419 --LYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAA 455 (799)
T ss_dssp --TGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHH
T ss_pred --ccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHH
Confidence 2567888888887777887888888888888888765
No 114
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=96.86 E-value=0.28 Score=45.11 Aligned_cols=83 Identities=11% Similarity=0.145 Sum_probs=47.5
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCC--hh--------------------hHHH----HHhhHHHHHHHHH
Q 004960 159 DMQALLLKCLQDETSNRVRIAALKAIGSFLEFTND--GA--------------------EVVK----FREFIPSILNVSR 212 (721)
Q Consensus 159 ~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~--~~--------------------~~~~----~~~~l~~ll~~l~ 212 (721)
.+-..+.+...+ .+..+|..+++.+..++-.... .. .... -..++..++.
T Consensus 144 ~lK~~Il~~~~s-~n~gvkl~~iKF~e~vIl~qT~~~~~~~~~~~d~SL~~Vp~~Hp~l~~~~Le~Ea~~lL~~LL~--- 219 (257)
T 3gs3_A 144 LIKAQILDMIDN-ENDGIRTNAIKFLEGVVVLQSFADEDSLKRDGDFSLADVPDHCTLFRREKLQEEGNNILDILLQ--- 219 (257)
T ss_dssp HHHHHHHHGGGS-SCHHHHHHHHHHHHHHHHHTSCCCTTSCCCTTCCCGGGSCSSCCSSCHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHcc-CCcchHHHHHHHHHHHHHhhcCCCcccCCCCCCCCHHHCCCCCCcCCHHHHHHHHHHHHHHHHH---
Confidence 334455566666 8899999999999887632210 00 0011 1233444444
Q ss_pred HHhhcC--CHHHHHHHHHHHHHHhcCcccchhhhHH
Q 004960 213 QCLASG--EEDVAVIAFEIFDELIESPAPLLGDSVK 246 (721)
Q Consensus 213 ~~l~~~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~ 246 (721)
.+.++ +......++.+|..+++..|.+....++
T Consensus 220 -~~~~~~iss~~l~a~lnsL~~Iak~RP~~~~rIl~ 254 (257)
T 3gs3_A 220 -FHGTTHISSVNLIACTSSLCTIAKMRPIFMGAVVE 254 (257)
T ss_dssp -HHTCTTCCHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred -HHcCCccchHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 33322 2334567788888888888777666554
No 115
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=96.71 E-value=0.58 Score=46.82 Aligned_cols=352 Identities=13% Similarity=0.125 Sum_probs=170.9
Q ss_pred HhcCCCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhcCCCHHHHHHHH------HHHHHHHhhcCCHHHHHHHHHHH
Q 004960 30 LAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVK------QSLIESITLEHSAPVRRASANVV 103 (721)
Q Consensus 30 ~~~~p~~~~~l~~il~~~~~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i~------~~ll~~l~~e~~~~vr~~~~~~l 103 (721)
+..++..+..+++++....+..+.++...++--.+...- +.+.....+. ..++..+.+..++.....++.++
T Consensus 72 l~~~~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~--~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~ 149 (480)
T 1ho8_A 72 FKVNGKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDK--YGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVV 149 (480)
T ss_dssp --CSSTTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSS--SSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHH
T ss_pred hhcCchHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCc--chHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHH
Confidence 444677889999999888889999999988888776521 1111111101 12344333323444455556666
Q ss_pred HHHHccccCCCCCcchHHHH------HHhccC-CcHHHHHHHHHHHHHhhhhh--hhcccc----cHHHHHHHHHHhhCC
Q 004960 104 SIIAKYAVPAGEWPDLLPFL------FQFSQS-EQEEHREVALILFSSLTETI--GQTFRP----HFADMQALLLKCLQD 170 (721)
Q Consensus 104 ~~i~~~~~~~~~~~~ll~~l------~~~l~~-~~~~~~~~al~~l~~i~~~~--~~~~~~----~~~~l~~~l~~~l~~ 170 (721)
+.++....+ -.+.++.+ ...+.+ ++...+..+..++..++... ...+.. .++.++.++...+.+
T Consensus 150 ~ll~~~~~~---~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~ 226 (480)
T 1ho8_A 150 SLLVQNGLH---NVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDS 226 (480)
T ss_dssp HHHTSTTTC---CHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-
T ss_pred HHHhccCCc---cHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhcc
Confidence 666543321 12333333 333443 23344557888888776432 222221 233344444444422
Q ss_pred C------------CCHHHHHHHHHHHHHhhhhcCChhhHHHHH-hhH---HHHHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 004960 171 E------------TSNRVRIAALKAIGSFLEFTNDGAEVVKFR-EFI---PSILNVSRQCLASGEEDVAVIAFEIFDELI 234 (721)
Q Consensus 171 ~------------~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~-~~l---~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~ 234 (721)
. ...++...++.|+--+ .+.++ ....+. ..+ +.++..+.. ...+++..-++.++..+.
T Consensus 227 ~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlL-SF~~~--~~~~l~~~~i~~~~~L~~i~k~---s~KEKvvRv~la~l~Nll 300 (480)
T 1ho8_A 227 QLATRIVATNSNHLGIQLQYHSLLLIWLL-TFNPV--FANELVQKYLSDFLDLLKLVKI---TIKEKVSRLCISIILQCC 300 (480)
T ss_dssp ------------CCHHHHHHHHHHHHHHH-TTSHH--HHHHHHTTSHHHHHHHHHHHHH---CCSHHHHHHHHHHHHHTT
T ss_pred ccccccccccCCCccHHHHHHHHHHHHHH-HcCHH--HHHHHHhcchHHHHHHHHHHHh---hccchhHHHHHHHHHHHh
Confidence 1 1234445555544332 22211 111122 222 344443322 245778888888999998
Q ss_pred cCcccchhhhHH------HHHHHHHHhhc-CCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHHHhhhccCCCC
Q 004960 235 ESPAPLLGDSVK------SIVHFSLEVSS-SHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEA 307 (721)
Q Consensus 235 ~~~~~~~~~~~~------~l~~~~~~~~~-~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~ 307 (721)
+..++.-...++ ..++ +++.++ ....|+++ ...++.+....+..-..+ .-+......+..-.-
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~rk~~Dedl-~edl~~L~e~L~~~~~~l---tsfDeY~~El~sG~L----- 370 (480)
T 1ho8_A 301 STRVKQHKKVIKQLLLLGNALP-TVQSLSERKYSDEEL-RQDISNLKEILENEYQEL---TSFDEYVAELDSKLL----- 370 (480)
T ss_dssp SSSSTTHHHHHHHHHHHHCHHH-HHHHHHSSCCSSHHH-HHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHTCC-----
T ss_pred cccchhhhhHHHHHHHHccchH-HHHHHhhCCCCcHHH-HHHHHHHHHHHHHHHHhc---ccHHHHHHHHhcCCc-----
Confidence 876422111112 1222 233333 34434444 334444443332221111 112222222222111
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHcCccccHhHHHHHHhhhc----------CCChhhHhHHHHHHHHHhhccHH--HHHHh
Q 004960 308 GEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQ----------NASPKYREAAVTAIGIISEGCAE--WMKEK 375 (721)
Q Consensus 308 ~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~i~~~l~~~l~----------~~~~~~r~~al~~l~~i~~~~~~--~~~~~ 375 (721)
+|+|......+...=+..+.+.-+ .++..+.+.++ +.+...-..||.=+|.++...|. .+...
T Consensus 371 ----~WSP~H~se~FW~ENa~kf~e~~~-~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~ 445 (480)
T 1ho8_A 371 ----CWSPPHVDNGFWSDNIDEFKKDNY-KIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDK 445 (480)
T ss_dssp ----CCCGGGGCHHHHHHHSGGGSSGGG-HHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHH
T ss_pred ----ccCCCccchhHHHHHHHHHHhcch-HHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHH
Confidence 255544444444444444432111 22333333332 23455666778888888877653 22222
Q ss_pred HHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhh
Q 004960 376 LESVLHIVLGALRDPEQFVRGAASFALGQFAEY 408 (721)
Q Consensus 376 l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 408 (721)
+ ..=..+++++.++++.||+.|+.|++.+...
T Consensus 446 l-g~K~~VM~Lm~h~d~~Vr~~AL~avQklm~~ 477 (480)
T 1ho8_A 446 T-GGKADIMELLNHSDSRVKYEALKATQAIIGY 477 (480)
T ss_dssp H-SHHHHHHHHTSCSSHHHHHHHHHHHHHHHHH
T ss_pred c-CcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 2 2346788899999999999999999987643
No 116
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=96.61 E-value=0.087 Score=51.54 Aligned_cols=234 Identities=12% Similarity=0.138 Sum_probs=139.1
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHhcC-C---CcH-----HHHHHHHhcCC-ChhHHHHHHHHHHHhhhhhhcCCCHH
Q 004960 5 LELLLIQFLMPDNDARRQAEDQIKRLAKD-P---QVV-----PALVQHLRTAK-TPNVRQLAAVLLRKKITGHWAKLSPQ 74 (721)
Q Consensus 5 l~~ll~~~~s~d~~~r~~A~~~L~~~~~~-p---~~~-----~~l~~il~~~~-~~~vr~~a~~~l~~~i~~~w~~~~~~ 74 (721)
+.+++..+-|+|+.+|.....-|-.++.. . .|+ ..+...+-... -..+- --...+...++..-..+.++
T Consensus 131 i~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~innif~~fiye~e~~~GIa-eLLeilgsIinGfa~PLkee 209 (403)
T 3fga_B 131 VLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIA-ELLEILGSIINGFALPLKEE 209 (403)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCCTTHH-HHHHHHHHHHHHCCSSCCHH
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCcccCCCHH-HHHHHHHHHHcccCCCchHH
Confidence 67788888899999999998888665432 1 122 12222221111 11111 12233444455443345677
Q ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhh-hhcc
Q 004960 75 LKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETI-GQTF 153 (721)
Q Consensus 75 ~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~-~~~~ 153 (721)
.+..+.+.|+.+-....-..--..++.++..+..++.. .-..++..++..--..+..-...-+.-+..+++.. +..+
T Consensus 210 hk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~--L~~~vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f 287 (403)
T 3fga_B 210 HKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDST--LTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEF 287 (403)
T ss_dssp HHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGG--GHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCch--hHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHH
Confidence 77777777777766422233346777887777766531 22233444443333333333335566666777654 3456
Q ss_pred cccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHH--hhhhcCChhhHHHHHhhHHHHHHHHHHHhhcC-CHHHHHHHHHHH
Q 004960 154 RPHFADMQALLLKCLQDETSNRVRIAALKAIGS--FLEFTNDGAEVVKFREFIPSILNVSRQCLASG-EEDVAVIAFEIF 230 (721)
Q Consensus 154 ~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~--l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~-~~~~~~~a~~~l 230 (721)
......++..+..++.+ ++.+|-..|+....+ ++....++ ...++|.++..+.+..... +..++..++.++
T Consensus 288 ~~i~~~lf~~la~ci~S-~hfqVAErAL~~wnNe~i~~li~~n-----~~~IlPii~p~L~~~~~~HWn~~v~~l~~~vl 361 (403)
T 3fga_B 288 VKIMEPLFRQLAKCVSS-PHFQVAERALYYWNNEYIMSLISDN-----AAKILPIMFPSLYRNSKTHWNKTIHGLIYNAL 361 (403)
T ss_dssp HHHHHHHHHHHHHHHTC-SCHHHHHHHHGGGGCHHHHHHHHTT-----HHHHHHHHHHHHHHTTSCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCC-CCHHHHHHHHHHhccHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 66777888888999999 899999888766532 22222111 2456777777665543322 678899999999
Q ss_pred HHHhcCcccchhhhHHH
Q 004960 231 DELIESPAPLLGDSVKS 247 (721)
Q Consensus 231 ~~l~~~~~~~~~~~~~~ 247 (721)
..+.+..+..+......
T Consensus 362 k~l~e~d~~lF~~~~~~ 378 (403)
T 3fga_B 362 KLFMEMNQKLFDDCTQQ 378 (403)
T ss_dssp HHHHTTSCCCCCTTHHH
T ss_pred HHHHHhCHHHHHHHHHH
Confidence 99999888877765443
No 117
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=96.51 E-value=0.69 Score=45.19 Aligned_cols=171 Identities=11% Similarity=0.082 Sum_probs=118.3
Q ss_pred ccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhh-
Q 004960 332 KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQ- 410 (721)
Q Consensus 332 ~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~- 410 (721)
+..++.+++.+.++..+++...|.....++...+.. ....+..+++.+..+++|+++.|.+.+..+.+.+....-
T Consensus 58 psLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~----~~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~ 133 (386)
T 3o2t_A 58 PTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR----DIELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQ 133 (386)
T ss_dssp GGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH----CGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888888888899999888888777643 233467888888888999999999999998888753211
Q ss_pred ------------HHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhh--------------------------
Q 004960 411 ------------PEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGE-------------------------- 452 (721)
Q Consensus 411 ------------~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~-------------------------- 452 (721)
......+..+-..++..+.+.+..||..+++++..++.....
T Consensus 134 ~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~ 213 (386)
T 3o2t_A 134 WMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPY 213 (386)
T ss_dssp HHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSS
T ss_pred HHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCc
Confidence 122234455556677777777888999999999998853310
Q ss_pred ----ccccchHHHHHHHHHhhcCC--ChhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHH
Q 004960 453 ----EILPFLDPLMGKLLAALENS--PRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFM 510 (721)
Q Consensus 453 ----~~~~~~~~i~~~l~~~l~~~--~~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~~l~~~l 510 (721)
.+......+++.|+..+..+ +...-..++.+++.|+..=+ .|++.|++.+..+-
T Consensus 214 L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP----~~~~rIl~aL~~l~ 273 (386)
T 3o2t_A 214 IQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRP----MFMSEVIQAYETLH 273 (386)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSG----GGHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcH----HHHHHHHHHHHhhc
Confidence 01112347788888888764 33344566777777776543 35677777776543
No 118
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=96.43 E-value=0.55 Score=43.13 Aligned_cols=178 Identities=13% Similarity=0.172 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCCHHH
Q 004960 97 RASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRV 176 (721)
Q Consensus 97 ~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v 176 (721)
..+.++-..+...+ | ..+|++++.+.++..+.+...|......+...+.... .+...+++.+..++++ .++.|
T Consensus 34 ~~L~qa~el~~~~d-p-~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~----~l~~~~l~~L~~Ll~d-~d~~V 106 (257)
T 3gs3_A 34 ELLAKVQETVLGSC-A-ELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKV----ELLPHVINVVSMLLRD-NSAQV 106 (257)
T ss_dssp HHHHHHHHHHTTTT-G-GGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTC-SCHHH
T ss_pred HHHHHHHHHHHccC-H-hHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcC-CCHHH
Confidence 44444433344433 4 3789999999998888888999999999988885543 4678888888889988 89999
Q ss_pred HHHHHHHHHHhhh----hc---CC-hh-hHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhc--Ccc-------
Q 004960 177 RIAALKAIGSFLE----FT---ND-GA-EVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIE--SPA------- 238 (721)
Q Consensus 177 r~~a~~~l~~l~~----~~---~~-~~-~~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~--~~~------- 238 (721)
.+.++.+...+.+ +. +. +. ....|. .+..+-+.+...+.+.+..++..|++++..++- ..+
T Consensus 107 ~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~-~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~qT~~~~~~~~~ 185 (257)
T 3gs3_A 107 IKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWN-ILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVLQSFADEDSLKR 185 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHH-HHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHTSCCCTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHH-HHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHhhcCCCcccCCC
Confidence 9888888776533 21 11 10 111122 222333333345677888999999999998762 100
Q ss_pred -------------cc-----hhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHh
Q 004960 239 -------------PL-----LGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYN 282 (721)
Q Consensus 239 -------------~~-----~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~ 282 (721)
++ +..--..++..++....+...+...-..++..|..+++..|.
T Consensus 186 ~~d~SL~~Vp~~Hp~l~~~~Le~Ea~~lL~~LL~~~~~~~iss~~l~a~lnsL~~Iak~RP~ 247 (257)
T 3gs3_A 186 DGDFSLADVPDHCTLFRREKLQEEGNNILDILLQFHGTTHISSVNLIACTSSLCTIAKMRPI 247 (257)
T ss_dssp TTCCCGGGSCSSCCSSCHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCGG
T ss_pred CCCCCHHHCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHhCcH
Confidence 01 122223456666665555544544555667777777776554
No 119
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=96.43 E-value=0.78 Score=44.83 Aligned_cols=189 Identities=13% Similarity=0.130 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCCHHH
Q 004960 97 RASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRV 176 (721)
Q Consensus 97 ~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v 176 (721)
..+.++=..+...+ | ...+++++.++++..+.+..+|..+...+.+.+.... .+...+++.+..++.+ .++.|
T Consensus 44 ~~L~q~~EL~l~~d-p-sLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~----el~~~~l~~L~~LL~d-~d~~V 116 (386)
T 3o2t_A 44 TVLKQVQELIINKD-P-TLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDI----ELLLKLIANLNMLLRD-ENVNV 116 (386)
T ss_dssp HHHHHHHHHHHTTC-G-GGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHHTC-SSHHH
T ss_pred HHHHHHHHHHhccC-H-HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcC-CCHHH
Confidence 34444433344333 3 3789999999999999999999999999998886432 3568888888888988 88999
Q ss_pred HHHHHHHHHHhhhh-------cCC-hhh-HHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCc------c---
Q 004960 177 RIAALKAIGSFLEF-------TND-GAE-VVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESP------A--- 238 (721)
Q Consensus 177 r~~a~~~l~~l~~~-------~~~-~~~-~~~~~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~------~--- 238 (721)
...++.+...+... .+. ... ...|. .+..+-+.+...+.+.+..++..|++++..++-.. +
T Consensus 117 ~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~-~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~~~p 195 (386)
T 3o2t_A 117 VKKAILTMTQLYKVALQWMVKSRVISELQEACWD-MVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIP 195 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHH-HHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHH-HHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCCCCcccc
Confidence 88888877765421 111 100 11121 22233333333566778899999999999876210 0
Q ss_pred ----------------cc-----hhhhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCChHHHHHHH
Q 004960 239 ----------------PL-----LGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVM 297 (721)
Q Consensus 239 ----------------~~-----~~~~~~~l~~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l 297 (721)
++ +..--..++..++..+.....+...-..++..|..+++..|. +.+.+++.+
T Consensus 196 ~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~------~~~rIl~aL 269 (386)
T 3o2t_A 196 RRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPM------FMSEVIQAY 269 (386)
T ss_dssp GGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGG------GHHHHHHHH
T ss_pred cccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHH------HHHHHHHHH
Confidence 01 111233466777777766544554445566777777765443 466666666
Q ss_pred Hh
Q 004960 298 CP 299 (721)
Q Consensus 298 ~~ 299 (721)
..
T Consensus 270 ~~ 271 (386)
T 3o2t_A 270 ET 271 (386)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 120
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=96.41 E-value=0.13 Score=44.66 Aligned_cols=150 Identities=13% Similarity=0.250 Sum_probs=91.4
Q ss_pred HHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhh-hccccchHHHHH-HHHHhhcCCChhHHHHHHHHHHHHH
Q 004960 411 PEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMG-EEILPFLDPLMG-KLLAALENSPRNLQETCMSAIGSVA 488 (721)
Q Consensus 411 ~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~-~~~~~~~~~i~~-~l~~~l~~~~~~v~~~~l~~l~~l~ 488 (721)
.+.+.|++.+..++.. ..|..|+..|. ...+ ..+.||+-..+. .+...+. +...-...+.....+.
T Consensus 7 ~Elq~yf~~It~a~~~-------~~r~~aL~sL~---~D~gL~~LlPyf~~fI~~~v~~nl~--~l~~L~~lm~~~~ALl 74 (196)
T 4atg_A 7 KELQLYFDKILSMIKS-------DMKDIAIECLE---KESGLQQLVPYFIQHISELILKSFK--EAEVLKTCIALYFSLI 74 (196)
T ss_dssp HHHHHHHHHHHHHHTS-------TTHHHHHHHHH---HCSSCTTTHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-------HHHHHHHHHHh---cCCChhhhHHHHHHHHHHHHHhccC--CHHHHHHHHHHHHHHH
Confidence 4556777777777765 23554444433 3332 234455443332 2222222 4444455555555665
Q ss_pred HHhhhcchhhHHHHHHHHHHHHhccC-chhhhhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCChhhHHHHH
Q 004960 489 AAAEQAFIPYAERVLELLKIFMVLTN-DEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTH 567 (721)
Q Consensus 489 ~~~~~~~~~~~~~i~~~l~~~l~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~ 567 (721)
....-.+.||+.+++|.+.+++-... .+. .+|..|-..++.++...|. .....-++++..+.+.+.|++..+. ...
T Consensus 75 ~N~~l~lepYlH~LipsvLtCll~k~l~~~-~LRd~AA~lL~~I~~~~~~-~y~~L~~RI~~tl~k~l~dp~~~l~-t~Y 151 (196)
T 4atg_A 75 KNKHVFIDPYLHQILPSLLTCVIGKSIVDD-DVRKMSADIVKYIYDTYSR-SYKTLAPRVLKTLKGVWMDPNRSED-SQY 151 (196)
T ss_dssp HCTTCCCGGGHHHHHHHHHHHHHCTTCCCH-HHHHHHHHHHHHHHHHHTT-TSTTHHHHHHHHHHHHHTCTTSCHH-HHH
T ss_pred cCCCCChHHHHHHHHHHHHHHHHhcccCHH-HHHHHHHHHHHHHHHHhCc-cCchHHHHHHHHHHHHHcCCCCChH-HHH
Confidence 55556788999999999888774321 122 7899999999999988874 4555568899999888877654442 234
Q ss_pred HHHHHHHH
Q 004960 568 GFFSNIAG 575 (721)
Q Consensus 568 ~~l~~l~~ 575 (721)
+++..+..
T Consensus 152 GAi~GL~~ 159 (196)
T 4atg_A 152 GALYCLSI 159 (196)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44544443
No 121
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=96.26 E-value=0.1 Score=51.99 Aligned_cols=234 Identities=13% Similarity=0.123 Sum_probs=133.4
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHhcC-CC---cH-----HHHHHHHhcCCChhHHHHHHHHHHHhhhhhhcCCCHH
Q 004960 4 SLELLLIQFLMPDNDARRQAEDQIKRLAKD-PQ---VV-----PALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQ 74 (721)
Q Consensus 4 ~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~-p~---~~-----~~l~~il~~~~~~~vr~~a~~~l~~~i~~~w~~~~~~ 74 (721)
-+..++..+-|+|+.+|.....-|-.++.. .+ |+ ..+...+-......--.-....+...++..-..+.++
T Consensus 163 Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKee 242 (449)
T 2npp_B 163 FVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEE 242 (449)
T ss_dssp HHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCHH
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcHH
Confidence 367788888899999999998888665542 22 22 1122222111111000112233444444443345677
Q ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhh-hhcc
Q 004960 75 LKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETI-GQTF 153 (721)
Q Consensus 75 ~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~-~~~~ 153 (721)
.+..+.+.|+.+.....-...-..++.++..+..++.. .-..++..|+..---.+..-...-+.-+..+++.. +..+
T Consensus 243 hk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~--L~~~vi~~LLk~WP~tns~KevlFL~eleeile~~~~~ef 320 (449)
T 2npp_B 243 HKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDST--LTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEF 320 (449)
T ss_dssp HHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGG--GHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcH--hHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHH
Confidence 77777777777766422233345677777777765531 12233333333332233333335556666677654 4456
Q ss_pred cccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHH--hhhhcCChhhHHHHHhhHHHHHHHHHHHhhcC-CHHHHHHHHHHH
Q 004960 154 RPHFADMQALLLKCLQDETSNRVRIAALKAIGS--FLEFTNDGAEVVKFREFIPSILNVSRQCLASG-EEDVAVIAFEIF 230 (721)
Q Consensus 154 ~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~--l~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~-~~~~~~~a~~~l 230 (721)
......++..+.+++++ ++.+|-..|+....+ ++....++ -..++|.++..+.+..... +..++..+..++
T Consensus 321 ~~i~~~lF~~la~ci~S-~hfqVAErAL~~w~N~~i~~li~~n-----~~~IlPii~p~L~~~s~~HWn~~V~~la~~vl 394 (449)
T 2npp_B 321 VKIMEPLFRQLAKCVSS-PHFQVAERALYYWNNEYIMSLISDN-----AAKILPIMFPSLYRNSKTHWNKTIHGLIYNAL 394 (449)
T ss_dssp HHHHHHHHHHHHHHHTC-SCHHHHHHHHGGGGCHHHHHHHHTT-----HHHHHHHHHHHHTSCTTCCSSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHCCHHHHHHHHhc-----hhhhHHhhHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 66778888889999999 899999988866532 22222111 2345666666543332221 567889999999
Q ss_pred HHHhcCcccchhhhH
Q 004960 231 DELIESPAPLLGDSV 245 (721)
Q Consensus 231 ~~l~~~~~~~~~~~~ 245 (721)
.-+.+..+..+....
T Consensus 395 k~l~e~d~~lf~~c~ 409 (449)
T 2npp_B 395 KLFMEMNQKLFDDCT 409 (449)
T ss_dssp HHHHTTCHHHHHHHH
T ss_pred HHHHHHCHHHHHHHH
Confidence 888887776655443
No 122
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=96.08 E-value=0.3 Score=42.38 Aligned_cols=127 Identities=14% Similarity=0.216 Sum_probs=85.8
Q ss_pred HHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccC------CChHHHHHHHHHH
Q 004960 370 EWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALED------ESDEVKEKSYYAL 443 (721)
Q Consensus 370 ~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~------~~~~v~~~a~~al 443 (721)
++...+++++...+.. ..|..|+..|..= +-+++++|.+++.+.+ .+...-.......
T Consensus 7 ~Elq~yf~~It~a~~~-------~~r~~aL~sL~~D---------~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~ 70 (196)
T 4atg_A 7 KELQLYFDKILSMIKS-------DMKDIAIECLEKE---------SGLQQLVPYFIQHISELILKSFKEAEVLKTCIALY 70 (196)
T ss_dssp HHHHHHHHHHHHHHTS-------TTHHHHHHHHHHC---------SSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-------HHHHHHHHHHhcC---------CChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 4455566666665554 4577777776541 1233344433332221 1344445556666
Q ss_pred HHHHHhhhhccccchHHHHHHHHHhhcCC---ChhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHhc
Q 004960 444 AAFCEDMGEEILPFLDPLMGKLLAALENS---PRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVL 512 (721)
Q Consensus 444 ~~l~~~~~~~~~~~~~~i~~~l~~~l~~~---~~~v~~~~l~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~ 512 (721)
..++.+-.-.+.||+..+++.+..++-.. ...+|+.+...++.++...+.......+.+...+.+.+..
T Consensus 71 ~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~d 142 (196)
T 4atg_A 71 FSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMD 142 (196)
T ss_dssp HHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTC
T ss_pred HHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcC
Confidence 66666666678899999999999987554 2379999999999999999988777788888888877754
No 123
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=96.07 E-value=1 Score=44.03 Aligned_cols=223 Identities=12% Similarity=0.113 Sum_probs=123.6
Q ss_pred HhhcCCHHHHHHHHHHHHHHhcCcc---cchhhhHHHHH-HHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCC
Q 004960 214 CLASGEEDVAVIAFEIFDELIESPA---PLLGDSVKSIV-HFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKL 289 (721)
Q Consensus 214 ~l~~~~~~~~~~a~~~l~~l~~~~~---~~~~~~~~~l~-~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~ 289 (721)
.+.++|++.|...-.++.++..... +++...+.+++ .+..+ .+. ... -...+++++++.+....-++. +.
T Consensus 137 lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~innif~~fiye---~e~-~~G-IaeLLeilgsIinGfa~PLke-eh 210 (403)
T 3fga_B 137 LFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYE---TEH-HNG-IAELLEILGSIINGFALPLKE-EH 210 (403)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHT---TCC-CTT-HHHHHHHHHHHHHHCCSSCCH-HH
T ss_pred HcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcC---ccc-CCC-HHHHHHHHHHHHcccCCCchH-HH
Confidence 6777888888888887777765432 23333333322 22221 111 111 234677788877653221111 11
Q ss_pred hHHHHHHHHhhhccCCCCCCCCCCcH-HHHHHHHHHHHHHHcCccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhcc
Q 004960 290 VIPILQVMCPLLAESNEAGEDDDLAP-DRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGC 368 (721)
Q Consensus 290 ~~~il~~l~~~l~~~~~~~~~~~~~~-~~~a~~~l~~l~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~ 368 (721)
..-+..+++|+-+... ... ......|+....+.-+. ....++..+...--..+......-+.-+..+.+..
T Consensus 211 k~fl~~vLlPLHk~~~-------~~~y~~qL~ycv~qf~eKDp~-L~~~vi~~LLk~WP~tns~KevlFL~Ele~iLe~~ 282 (403)
T 3fga_B 211 KIFLLKVLLPLHKVKS-------LSVYHPQLAYCVVQFLEKDST-LTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVI 282 (403)
T ss_dssp HHHHHHTTTGGGGSTT-------GGGTHHHHHHHHHHHHHHCGG-GHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCc-------chhhHHHHHHHHHHHHHhCch-hHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhC
Confidence 2224455677665533 111 23334455555544432 44556666655433333333334466677777765
Q ss_pred H-HHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHH--HHhhhhHHHHHhhhhHHHHHHHhccCC-ChHHHHHHHHHHH
Q 004960 369 A-EWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQ--FAEYLQPEIVSHYESVLPCILNALEDE-SDEVKEKSYYALA 444 (721)
Q Consensus 369 ~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~--l~~~~~~~~~~~~~~~l~~l~~~l~~~-~~~v~~~a~~al~ 444 (721)
+ ..+......++..+..+++++|..|-..|+....+ +.....+.....++-++|.+.+..... +..|+..+..++.
T Consensus 283 ~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~~~IlPii~p~L~~~~~~HWn~~v~~l~~~vlk 362 (403)
T 3fga_B 283 EPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALK 362 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHHHHHHHHHHHHHHTTSCCSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4 56677788899999999999999999888766532 111111111233455555565544433 6789988888888
Q ss_pred HHHHhh
Q 004960 445 AFCEDM 450 (721)
Q Consensus 445 ~l~~~~ 450 (721)
.+.+.-
T Consensus 363 ~l~e~d 368 (403)
T 3fga_B 363 LFMEMN 368 (403)
T ss_dssp HHHTTS
T ss_pred HHHHhC
Confidence 765443
No 124
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=95.62 E-value=0.96 Score=51.73 Aligned_cols=151 Identities=14% Similarity=0.159 Sum_probs=96.1
Q ss_pred cHHHHHHHHHHHHHHHc-------CccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhh
Q 004960 314 APDRAAAEVIDTMALNL-------AKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGA 386 (721)
Q Consensus 314 ~~~~~a~~~l~~l~~~~-------~~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~ 386 (721)
..+..+.-+++.++... +...++.+.+.+.+.+.+.+...+..++.+||++... ..++.+.++
T Consensus 410 ~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p----------~~l~~l~~~ 479 (1056)
T 1lsh_A 410 ILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP----------NSIKKIQRF 479 (1056)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG----------GGHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh----------hHHHHHHHh
Confidence 45666666666666533 2345677888888888888888899999999999853 234444455
Q ss_pred cC-------CCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhcc--CCChHHHHHHHHHHHHHHHhhhhccccc
Q 004960 387 LR-------DPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALE--DESDEVKEKSYYALAAFCEDMGEEILPF 457 (721)
Q Consensus 387 l~-------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~--~~~~~v~~~a~~al~~l~~~~~~~~~~~ 457 (721)
+. +...+||.+|+++|.++....+..+ -+.+++.+. ..++++|..|+..|.. ..++
T Consensus 480 l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v-------~~il~~i~~n~~e~~EvRiaA~~~Lm~---t~P~----- 544 (1056)
T 1lsh_A 480 LPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKV-------QEIVLPIFLNVAIKSELRIRSCIVFFE---SKPS----- 544 (1056)
T ss_dssp STTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHH-------HHHHHHHHHCTTSCHHHHHHHHHHHHH---TCCC-----
T ss_pred hcCccccccccchHHHHHHHHHHHHhhhhchHHH-------HHHHHHHhcCCCCChHHHHHHHHHHHH---HCcC-----
Confidence 42 2356899999999999987654322 223344443 3467899888877742 1111
Q ss_pred hHHHHHHHHHhhc-CCChhHHHHHHHHHHHHHHH
Q 004960 458 LDPLMGKLLAALE-NSPRNLQETCMSAIGSVAAA 490 (721)
Q Consensus 458 ~~~i~~~l~~~l~-~~~~~v~~~~l~~l~~l~~~ 490 (721)
. .+++.+...+. +.+..|+..+...|.+++..
T Consensus 545 ~-~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s 577 (1056)
T 1lsh_A 545 V-ALVSMVAVRLRREPNLQVASFVYSQMRSLSRS 577 (1056)
T ss_dssp H-HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred H-HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhc
Confidence 1 23444444444 35677777777777666654
No 125
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=95.47 E-value=0.26 Score=48.02 Aligned_cols=216 Identities=8% Similarity=0.010 Sum_probs=126.0
Q ss_pred CCChhhHhHHHHHHHHHhhc--c-HHHHHHhH-HHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHH-
Q 004960 348 NASPKYREAAVTAIGIISEG--C-AEWMKEKL-ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLP- 422 (721)
Q Consensus 348 ~~~~~~r~~al~~l~~i~~~--~-~~~~~~~l-~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~- 422 (721)
++.|..-......+..+... . ++....++ .+.+..++..+++++++=|......+.++-..+.. .+.++...+.
T Consensus 140 e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~-~R~~Irk~i~n 218 (392)
T 2jak_A 140 EAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLG-LRAYIRKQINN 218 (392)
T ss_dssp CTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHHH
T ss_pred ccCChhHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 45677666666655555543 1 22233333 34677888899999999999998888777654432 2223322222
Q ss_pred HHHHhccCCC-hHHHHHHHHHHHHHHHhhhhcccc-chHHHHHHHHHhhcCCC-hhHHHHHHHHHHHHHHHhhhcchhhH
Q 004960 423 CILNALEDES-DEVKEKSYYALAAFCEDMGEEILP-FLDPLMGKLLAALENSP-RNLQETCMSAIGSVAAAAEQAFIPYA 499 (721)
Q Consensus 423 ~l~~~l~~~~-~~v~~~a~~al~~l~~~~~~~~~~-~~~~i~~~l~~~l~~~~-~~v~~~~l~~l~~l~~~~~~~~~~~~ 499 (721)
.+.+.+.+.. ..--...+..++.++......+.+ +..-+...|.++..... .....+...|+...+..-+. ..
T Consensus 219 if~~fiye~e~~~GIaeLLeilgsIIngfa~PLKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~----L~ 294 (392)
T 2jak_A 219 IFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDST----LT 294 (392)
T ss_dssp HHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGG----GH
T ss_pred HHHHHhhccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCch----hH
Confidence 2222222221 112345677778888776433332 23334445555554442 22234455555555544332 33
Q ss_pred HHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCChhhHHHHHHHHH
Q 004960 500 ERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFS 571 (721)
Q Consensus 500 ~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~l~ 571 (721)
..++..+.+.+..++.... ..-+.-+..+...++++.|......++..+..++++++..|.+.|+..|.
T Consensus 295 ~~vi~~LLk~WP~tns~Ke---vlFL~eleeiLe~~~~~~f~~i~~~lF~~la~ci~S~hfqVAErAL~~wn 363 (392)
T 2jak_A 295 EPVVMALLKYWPKTHSPKE---VMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWN 363 (392)
T ss_dssp HHHHHHHHHSSCSSCCTTH---HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHGGGG
T ss_pred HHHHHHHHHhCCCCCchHH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHhC
Confidence 4455556666655443321 12345566666777777888888999999999999999999998888775
No 126
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=94.98 E-value=1.8 Score=43.27 Aligned_cols=218 Identities=14% Similarity=0.133 Sum_probs=118.3
Q ss_pred HhhcCCHHHHHHHHHHHHHHhcCc---ccchhhhHHHHH-HHHHHhhcCCCCChHHHHHHHHHHHHHHHHhHhhhhhcCC
Q 004960 214 CLASGEEDVAVIAFEIFDELIESP---APLLGDSVKSIV-HFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKL 289 (721)
Q Consensus 214 ~l~~~~~~~~~~a~~~l~~l~~~~---~~~~~~~~~~l~-~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~ 289 (721)
.+.++|+..|...-.+|..+.... .+++...+..++ .+..+ .+. ... -...+++++++.+....-++. +.
T Consensus 170 lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fi~e---~e~-~nG-IaeLLeilgSIinGfa~PLKe-eh 243 (449)
T 2npp_B 170 LFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYE---TEH-HNG-IAELLEILGSIINGFALPLKE-EH 243 (449)
T ss_dssp TTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHHHT---CSC-CSC-HHHHHHHHHHHHSSCCSSCCH-HH
T ss_pred HcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cCC-CCC-HHHHHHHHHHHHhccCCCCcH-HH
Confidence 677788888888888887776643 233333333332 22221 111 111 234567777777542211111 11
Q ss_pred hHHHHHHHHhhhccCCCCCCCCCCcH-HHHHHHHHHHHHHHcCccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhcc
Q 004960 290 VIPILQVMCPLLAESNEAGEDDDLAP-DRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGC 368 (721)
Q Consensus 290 ~~~il~~l~~~l~~~~~~~~~~~~~~-~~~a~~~l~~l~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~ 368 (721)
..-+...++|+..... ... ......|+..+.+.-+. ....++..+...---.+......-+.-+..+.+..
T Consensus 244 k~fl~~vLlPLhk~~~-------l~~y~~qL~ycv~qf~eKDp~-L~~~vi~~LLk~WP~tns~KevlFL~eleeile~~ 315 (449)
T 2npp_B 244 KIFLLKVLLPLHKVKS-------LSVYHPQLAYCVVQFLEKDST-LTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVI 315 (449)
T ss_dssp HHHHHHTTGGGGGSSC-------GGGTHHHHHHHHHHHHHHCGG-GHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHccch-------hHHhHHHHHHHHHHHHhcCcH-hHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhC
Confidence 2223455677665433 122 12233455554444332 44556666655433333333333455677777765
Q ss_pred -HHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhcc----C-CChHHHHHHHHH
Q 004960 369 -AEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALE----D-ESDEVKEKSYYA 442 (721)
Q Consensus 369 -~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~----~-~~~~v~~~a~~a 442 (721)
+..+......++..+..+++++|..|-+.|+....+= .+-.-+.++-..++|.+...+. . -+..|+..+..+
T Consensus 316 ~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~--~i~~li~~n~~~IlPii~p~L~~~s~~HWn~~V~~la~~v 393 (449)
T 2npp_B 316 EPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNE--YIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNA 393 (449)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCH--HHHHHHHTTHHHHHHHHHHHHTSCTTCCSSTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCH--HHHHHHHhchhhhHHhhHHHHHHHHHHhcCHHHHHHHHHH
Confidence 4566777888999999999999999998887664321 0001112233445555555442 2 256689888888
Q ss_pred HHHHH
Q 004960 443 LAAFC 447 (721)
Q Consensus 443 l~~l~ 447 (721)
+..+.
T Consensus 394 lk~l~ 398 (449)
T 2npp_B 394 LKLFM 398 (449)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87554
No 127
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=94.93 E-value=1.5 Score=50.25 Aligned_cols=131 Identities=16% Similarity=0.115 Sum_probs=81.4
Q ss_pred hHHHHHHhhhcC----CChhhHhHHHHHHHHHhhccH-H--HH-HHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhh
Q 004960 337 PVFEFASVSCQN----ASPKYREAAVTAIGIISEGCA-E--WM-KEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEY 408 (721)
Q Consensus 337 ~i~~~l~~~l~~----~~~~~r~~al~~l~~i~~~~~-~--~~-~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 408 (721)
..+..+...+.+ .++..|..++.++|.++.... . .+ .+.++.+...+.+.+...+..-+..++++||++...
T Consensus 391 e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p 470 (1056)
T 1lsh_A 391 ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP 470 (1056)
T ss_dssp HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh
Confidence 344444444443 467789999999999986421 1 00 122455666666666666777788899999988753
Q ss_pred hhHHHHHhhhhHHHHHHHhcc-------CCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcC--CChhHHHH
Q 004960 409 LQPEIVSHYESVLPCILNALE-------DESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALEN--SPRNLQET 479 (721)
Q Consensus 409 ~~~~~~~~~~~~l~~l~~~l~-------~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~--~~~~v~~~ 479 (721)
..++.+.+.+. +...+||..|++||..+....+ ..+-+.+.+++.+ .+.++|..
T Consensus 471 ----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p-------~~v~~il~~i~~n~~e~~EvRia 533 (1056)
T 1lsh_A 471 ----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDP-------RKVQEIVLPIFLNVAIKSELRIR 533 (1056)
T ss_dssp ----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCH-------HHHHHHHHHHHHCTTSCHHHHHH
T ss_pred ----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhch-------HHHHHHHHHHhcCCCCChHHHHH
Confidence 22333444332 2245789999999998864322 2344456666643 46889988
Q ss_pred HHHHH
Q 004960 480 CMSAI 484 (721)
Q Consensus 480 ~l~~l 484 (721)
|+..+
T Consensus 534 A~~~L 538 (1056)
T 1lsh_A 534 SCIVF 538 (1056)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 128
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=94.78 E-value=2 Score=40.66 Aligned_cols=140 Identities=13% Similarity=0.287 Sum_probs=98.3
Q ss_pred ccHhHHHHHHhhhcCCChhhHhHH-HHHHHHHhhccHHHHHHhHHHHHHHHH----hhcC---CCCHhHHHHHHHHHHHH
Q 004960 334 VFPPVFEFASVSCQNASPKYREAA-VTAIGIISEGCAEWMKEKLESVLHIVL----GALR---DPEQFVRGAASFALGQF 405 (721)
Q Consensus 334 ~~~~i~~~l~~~l~~~~~~~r~~a-l~~l~~i~~~~~~~~~~~l~~i~~~l~----~~l~---d~~~~vr~~a~~~l~~l 405 (721)
++|++++.+..--++..+..|++- +.+++.+....++.+.+.++.++..++ .+++ ++.|..|..-...|..+
T Consensus 70 ~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai 149 (321)
T 1w9c_A 70 FVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAV 149 (321)
T ss_dssp THHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHH
Confidence 456666554443444556677664 556666776666666666666665444 4444 46899999999999999
Q ss_pred HhhhhHHHH----HhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhh--c-----cccchHHHHHHHHHhhcCCC
Q 004960 406 AEYLQPEIV----SHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGE--E-----ILPFLDPLMGKLLAALENSP 473 (721)
Q Consensus 406 ~~~~~~~~~----~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~--~-----~~~~~~~i~~~l~~~l~~~~ 473 (721)
...+.+.+. +.+..++..++=+++++...|.+.++..+..++.+... . ...|+-.+++.++.++.+..
T Consensus 150 ~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~~~~~~~~Fy~~fy~~il~~if~VlTDs~ 228 (321)
T 1w9c_A 150 NSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTS 228 (321)
T ss_dssp HHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 988766543 35677888888889999999999999999999888742 1 22456677777777777763
No 129
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=94.44 E-value=0.85 Score=38.89 Aligned_cols=100 Identities=14% Similarity=0.104 Sum_probs=71.9
Q ss_pred hhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhh--hhHHH
Q 004960 345 SCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY--ESVLP 422 (721)
Q Consensus 345 ~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~~l~ 422 (721)
.+.++||.....-+..+..-.. .-...+..|.+.+++.++.|+..|+..|..+..+++..+...+ ..++.
T Consensus 25 ~l~~~Dw~~ileicD~I~~~~~--------~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~ 96 (171)
T 1juq_A 25 SNRQEDWEYIIGFCDQINKELE--------GPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLN 96 (171)
T ss_dssp TCSSCCHHHHHHHHHHHHHSTT--------HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHcCCc--------cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHH
Confidence 3456788655444443333211 1235567788889999999999999999999999998777533 46677
Q ss_pred HHHHhccC------CChHHHHHHHHHHHHHHHhhhh
Q 004960 423 CILNALED------ESDEVKEKSYYALAAFCEDMGE 452 (721)
Q Consensus 423 ~l~~~l~~------~~~~v~~~a~~al~~l~~~~~~ 452 (721)
.|.+.+.. .+..|+..++..+......++.
T Consensus 97 eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 132 (171)
T 1juq_A 97 ELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALPE 132 (171)
T ss_dssp HHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 77776652 3578999999999998887754
No 130
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=93.69 E-value=6.4 Score=39.47 Aligned_cols=58 Identities=17% Similarity=0.169 Sum_probs=46.1
Q ss_pred CCHhHHHHHHHHHHHHHhhhhHHHHHhhh--hHHHHHHHhccCCChHHHHHHHHHHHHHHH
Q 004960 390 PEQFVRGAASFALGQFAEYLQPEIVSHYE--SVLPCILNALEDESDEVKEKSYYALAAFCE 448 (721)
Q Consensus 390 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~l~~l~~~l~~~~~~v~~~a~~al~~l~~ 448 (721)
.++.+...||.=+|.+++..|.. ...+. +.=..+++.+.+++++||..|+.|+..++.
T Consensus 417 ~d~~~laVAc~Digefvr~~P~g-r~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 417 QEKIIIQVALNDITHVVELLPES-IDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTH-HHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred CCcceEEeecccHHHHHHHCcch-hHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 47889999999999999988643 22222 345667888999999999999999998764
No 131
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=93.60 E-value=1 Score=36.97 Aligned_cols=75 Identities=13% Similarity=0.119 Sum_probs=60.2
Q ss_pred HHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhh--hhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhh
Q 004960 378 SVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY--ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGE 452 (721)
Q Consensus 378 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~ 452 (721)
..+..+.+.+++.++.++..|+..|..+..+++..+...+ ..++..+.+.+...++.|+..+...+......++.
T Consensus 42 ~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~ 118 (140)
T 3ldz_A 42 DCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKN 118 (140)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCC
Confidence 5577788888999999999999999999999998776433 45566666655556788999999999988887754
No 132
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=93.33 E-value=0.72 Score=37.87 Aligned_cols=77 Identities=10% Similarity=0.117 Sum_probs=60.2
Q ss_pred hhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccch--HHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhc
Q 004960 418 ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFL--DPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQA 494 (721)
Q Consensus 418 ~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~~ 494 (721)
...+..|.+.|++.++.++..|+..|..+++++|..+...+ ..+++.+.+++...++.|+..++..+.......++.
T Consensus 41 k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (140)
T 3ldz_A 41 KDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKND 119 (140)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 36677788888888999999999999999999987655322 355555666666678899999999999888877643
No 133
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=93.23 E-value=1.1 Score=38.21 Aligned_cols=76 Identities=8% Similarity=0.116 Sum_probs=60.7
Q ss_pred hhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccch--HHHHHHHHHhhcC------CChhHHHHHHHHHHHHHH
Q 004960 418 ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFL--DPLMGKLLAALEN------SPRNLQETCMSAIGSVAA 489 (721)
Q Consensus 418 ~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~--~~i~~~l~~~l~~------~~~~v~~~~l~~l~~l~~ 489 (721)
...+..|.+.+++.++.++..|+..|..++.+++..+...+ ..+++.|.+++.. .+..|++.+++.+.....
T Consensus 49 k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 49 QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 46778888889999999999999999999999987655322 3566677777652 357899999999999888
Q ss_pred Hhhh
Q 004960 490 AAEQ 493 (721)
Q Consensus 490 ~~~~ 493 (721)
..++
T Consensus 129 ~f~~ 132 (171)
T 1juq_A 129 ALPE 132 (171)
T ss_dssp HCTT
T ss_pred HcCC
Confidence 8765
No 134
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=93.13 E-value=4.4 Score=38.42 Aligned_cols=151 Identities=14% Similarity=0.088 Sum_probs=98.4
Q ss_pred HHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhH-HHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHh--h
Q 004960 341 FASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKL-ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSH--Y 417 (721)
Q Consensus 341 ~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~--~ 417 (721)
.+.+.+.+.+.+.+..++.-+..+...-.+...+++ .+-+..++....+.+...+..++.+++.+..+... +... -
T Consensus 122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~G-m~gvvs~ 200 (339)
T 3dad_A 122 AILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDG-MLGVVAH 200 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHH-HHHHHHC
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhcccc-ccchhCC
Confidence 344455567778888888888885544333333332 24566777777777999999999999999876321 1111 3
Q ss_pred hhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHH-----------HHHHHHHhhc---CCChhHHHHHHHH
Q 004960 418 ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDP-----------LMGKLLAALE---NSPRNLQETCMSA 483 (721)
Q Consensus 418 ~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~-----------i~~~l~~~l~---~~~~~v~~~~l~~ 483 (721)
+.++..+...+.+....|...|+..|..++........-.... .++.+...++ ..+..++..++..
T Consensus 201 ~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtL 280 (339)
T 3dad_A 201 SDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTL 280 (339)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 6788888888887778898999999999988763221111110 1335555665 4577777777777
Q ss_pred HHHHHHHhh
Q 004960 484 IGSVAAAAE 492 (721)
Q Consensus 484 l~~l~~~~~ 492 (721)
|..+....+
T Consensus 281 IN~lL~~ap 289 (339)
T 3dad_A 281 INKTLAALP 289 (339)
T ss_dssp HHHHHHHCS
T ss_pred HHHHHhcCC
Confidence 766665544
No 135
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=92.71 E-value=3.7 Score=33.95 Aligned_cols=100 Identities=11% Similarity=0.008 Sum_probs=72.6
Q ss_pred hhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhh--hhHHH
Q 004960 345 SCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY--ESVLP 422 (721)
Q Consensus 345 ~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~~l~ 422 (721)
.+.++||.....-+..+..-.. .-...+..+.+.+++.++.++..|+..|..+..+++..+...+ ..++.
T Consensus 13 ~l~~~dw~~~leicD~I~~~~~--------~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~ 84 (148)
T 1mhq_A 13 SMSEQDWSAIQNFCEQVNTDPN--------GPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLN 84 (148)
T ss_dssp TCSSCCHHHHHHHHHHHHHSSH--------HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHcCCc--------cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHH
Confidence 3456777654443433332211 1235567788888999999999999999999999998886544 57888
Q ss_pred HHHHhccC------CChHHHHHHHHHHHHHHHhhhh
Q 004960 423 CILNALED------ESDEVKEKSYYALAAFCEDMGE 452 (721)
Q Consensus 423 ~l~~~l~~------~~~~v~~~a~~al~~l~~~~~~ 452 (721)
.+.+.+.. .+..|+..++..+......++.
T Consensus 85 eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 120 (148)
T 1mhq_A 85 ELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWFPE 120 (148)
T ss_dssp HHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 88887764 3578999999999988877754
No 136
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=92.21 E-value=1.1 Score=37.19 Aligned_cols=76 Identities=5% Similarity=0.071 Sum_probs=60.7
Q ss_pred hhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccc--hHHHHHHHHHhhcC------CChhHHHHHHHHHHHHHH
Q 004960 418 ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPF--LDPLMGKLLAALEN------SPRNLQETCMSAIGSVAA 489 (721)
Q Consensus 418 ~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~--~~~i~~~l~~~l~~------~~~~v~~~~l~~l~~l~~ 489 (721)
...+..|.+.+++.++.++..|+..|..++.++|..+... -..+++.|.+++.. .+..|+..++..+...+.
T Consensus 47 k~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 47 PLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 3667788888899999999999999999999998765432 23666777777753 468899999999999988
Q ss_pred Hhhh
Q 004960 490 AAEQ 493 (721)
Q Consensus 490 ~~~~ 493 (721)
.+++
T Consensus 127 ~f~~ 130 (149)
T 3g2s_A 127 GLPE 130 (149)
T ss_dssp HCTT
T ss_pred HhCC
Confidence 8765
No 137
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=92.20 E-value=2.8 Score=35.38 Aligned_cols=99 Identities=10% Similarity=0.059 Sum_probs=69.5
Q ss_pred hcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhh--hhHHHH
Q 004960 346 CQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY--ESVLPC 423 (721)
Q Consensus 346 l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~~l~~ 423 (721)
+.++||.....-+..+..-.. .-...+..|.+.+++.++.++..|+..|..+..+++..+...+ ..++..
T Consensus 28 ~~~~Dw~~~leicD~I~~~~~--------~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~e 99 (163)
T 1x5b_A 28 NTTEDWSLIMDICDKVGSTPN--------GAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATE 99 (163)
T ss_dssp CSSCCHHHHHHHHHHHHHSSS--------HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHH
T ss_pred CCCcCHHHHHHHHHHHhCCCc--------cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHH
Confidence 445677665544433332111 1235567788888999999999999999999999998776433 346666
Q ss_pred HHHhccC-CChHHHHHHHHHHHHHHHhhhh
Q 004960 424 ILNALED-ESDEVKEKSYYALAAFCEDMGE 452 (721)
Q Consensus 424 l~~~l~~-~~~~v~~~a~~al~~l~~~~~~ 452 (721)
+.+.+.. .++.|+..++..+......++.
T Consensus 100 l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 129 (163)
T 1x5b_A 100 VRAVIKNKAHPKVCEKLKSLMVEWSEEFQK 129 (163)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHHHHhcC
Confidence 6555553 4678999999999888887764
No 138
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=92.03 E-value=2.1 Score=35.35 Aligned_cols=75 Identities=13% Similarity=0.137 Sum_probs=61.5
Q ss_pred HHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhh--hhHHHHHHHhccC------CChHHHHHHHHHHHHHHHh
Q 004960 378 SVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY--ESVLPCILNALED------ESDEVKEKSYYALAAFCED 449 (721)
Q Consensus 378 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~~l~~l~~~l~~------~~~~v~~~a~~al~~l~~~ 449 (721)
..+..+.+.+++.+|.+...|+..|..+..+++..+...+ ..++..|.+.+.+ .+..|+..++..+......
T Consensus 48 ~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 127 (149)
T 3g2s_A 48 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG 127 (149)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 5567788888999999999999999999999998876543 5677777777753 4578999999999999887
Q ss_pred hhh
Q 004960 450 MGE 452 (721)
Q Consensus 450 ~~~ 452 (721)
++.
T Consensus 128 f~~ 130 (149)
T 3g2s_A 128 LPE 130 (149)
T ss_dssp CTT
T ss_pred hCC
Confidence 754
No 139
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=91.51 E-value=1.4 Score=36.44 Aligned_cols=76 Identities=8% Similarity=0.064 Sum_probs=62.3
Q ss_pred hhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccch--HHHHHHHHHhhcC------CChhHHHHHHHHHHHHHH
Q 004960 418 ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFL--DPLMGKLLAALEN------SPRNLQETCMSAIGSVAA 489 (721)
Q Consensus 418 ~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~--~~i~~~l~~~l~~------~~~~v~~~~l~~l~~l~~ 489 (721)
...+..|.+.+++.++.++..|+..|..++.++|..+...+ ..+++.|.+++.. .+..|++.++..+...+.
T Consensus 37 k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 46778888889999999999999999999999987665433 4777788888764 367899999999998888
Q ss_pred Hhhh
Q 004960 490 AAEQ 493 (721)
Q Consensus 490 ~~~~ 493 (721)
..++
T Consensus 117 ~f~~ 120 (148)
T 1mhq_A 117 WFPE 120 (148)
T ss_dssp HCTT
T ss_pred HcCC
Confidence 7654
No 140
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=90.66 E-value=12 Score=35.55 Aligned_cols=180 Identities=14% Similarity=0.196 Sum_probs=113.1
Q ss_pred ChhHHHHHHHHHHHhhhhhhcCCCHH-----HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHccccCCC--CCcchHH
Q 004960 49 TPNVRQLAAVLLRKKITGHWAKLSPQ-----LKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAG--EWPDLLP 121 (721)
Q Consensus 49 ~~~vr~~a~~~l~~~i~~~w~~~~~~-----~~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~--~~~~ll~ 121 (721)
+.+.|.-++.++.+.+++.-..-.+. ....+...|+.+.. ++.+.-.++.++...++++.-.. .+.+.+-
T Consensus 91 ~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe---~~diAl~~G~mLRecir~e~la~~iL~~~~f~ 167 (341)
T 1upk_A 91 DFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE---SPEIALNCGIMLRECIRHEPLAKIILWSEQFY 167 (341)
T ss_dssp CHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG---STTTHHHHHHHHHHHHTSHHHHHHHHHSGGGG
T ss_pred CchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc---cchhHhHHHHHHHHHHHhHHHHHHHhccHHHH
Confidence 67788888888888877542221111 12233334444433 34444555555555554321000 1222334
Q ss_pred HHHHhccCCcHHHHHHHHHHHHHhhhhh----hhcccccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCChhhH
Q 004960 122 FLFQFSQSEQEEHREVALILFSSLTETI----GQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEV 197 (721)
Q Consensus 122 ~l~~~l~~~~~~~~~~al~~l~~i~~~~----~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 197 (721)
.+++.++.++-++...|+.++..+.... .+.+....+.++....+++.+ +|--+|..+++.|+.++.......-.
T Consensus 168 ~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S-~NYVTkRQSlKLLgelLldr~N~~vM 246 (341)
T 1upk_A 168 DFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHS-ENYVTKRQSLKLLGELLLDRHNFTIM 246 (341)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHHHHSGGGHHHH
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcC-CcchhHHHHHHHHHHHHhCchHHHHH
Confidence 5667888888888889999999887543 344556678888888888988 89999999999999987543211111
Q ss_pred HHH---HhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcC
Q 004960 198 VKF---REFIPSILNVSRQCLASGEEDVAVIAFEIFDELIES 236 (721)
Q Consensus 198 ~~~---~~~l~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~ 236 (721)
..+ ...+..++. .+.+++..++..|+.++.-++..
T Consensus 247 ~~Yis~~~nLkl~M~----LL~d~sk~Iq~EAFhVFKvFVAN 284 (341)
T 1upk_A 247 TKYISKPENLKLMMN----LLRDKSRNIQFEAFHVFKVFVAN 284 (341)
T ss_dssp HHHTTCHHHHHHHHH----HTTCSCHHHHHHHHHHHHHHHHC
T ss_pred HHHhCCHHHHHHHHH----HhcCchhchhhhhhhheeeeeeC
Confidence 111 233444555 67888999999999998877754
No 141
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=90.49 E-value=1.6 Score=36.86 Aligned_cols=77 Identities=13% Similarity=0.142 Sum_probs=59.7
Q ss_pred hhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccch--HHHHHHHHHhhcC-CChhHHHHHHHHHHHHHHHhhhc
Q 004960 418 ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFL--DPLMGKLLAALEN-SPRNLQETCMSAIGSVAAAAEQA 494 (721)
Q Consensus 418 ~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~--~~i~~~l~~~l~~-~~~~v~~~~l~~l~~l~~~~~~~ 494 (721)
...+..|.+.|++.++.++..|+..|..++.+++..+...+ ..+++.+.+++.. .++.|++.++..+.......+..
T Consensus 51 keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 130 (163)
T 1x5b_A 51 KDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQKD 130 (163)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 46777888888999999999999999999999987655322 3455556666654 56899999999998888877643
No 142
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=90.15 E-value=13 Score=35.28 Aligned_cols=153 Identities=15% Similarity=0.171 Sum_probs=81.7
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHH-HhcCCCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHH
Q 004960 4 SLELLLIQFLMPDNDARRQAEDQIKR-LAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQS 82 (721)
Q Consensus 4 ~l~~ll~~~~s~d~~~r~~A~~~L~~-~~~~p~~~~~l~~il~~~~~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i~~~ 82 (721)
+...++..+.+++...++.|-..|++ ++.++.|+..++. .+ +...
T Consensus 119 ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~---~~--------GL~~----------------------- 164 (339)
T 3dad_A 119 RVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVH---SE--------GLSC----------------------- 164 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHH---TT--------HHHH-----------------------
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHH---hc--------cHHH-----------------------
Confidence 45566677777777778888888877 5556666544332 00 1111
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHcc-----ccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccccH
Q 004960 83 LIESITLEHSAPVRRASANVVSIIAKY-----AVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHF 157 (721)
Q Consensus 83 ll~~l~~e~~~~vr~~~~~~l~~i~~~-----~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~ 157 (721)
|+.... +.+.+..+.+-.++..+..+ ..- .+++++..+..++.+.+..+.+.|+..|..+++..+....-..
T Consensus 165 Li~vi~-~~~gN~q~Y~L~AL~~LM~~v~Gm~gvv--s~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~ 241 (339)
T 3dad_A 165 LIRVGA-AADHNYQSYILRALGQLMLFVDGMLGVV--AHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFI 241 (339)
T ss_dssp HHHHHT-TSCHHHHHHHHHHHHHHTTSHHHHHHHH--HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHHH-hcChHHHHHHHHHHHHHHhccccccchh--CCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHH
Confidence 111111 12333333333333333332 110 1456677777777766667777777777777765432111111
Q ss_pred HH-----------HHHHHHHhhC--CCCCHHHHHHHHHHHHHhhhhcCC
Q 004960 158 AD-----------MQALLLKCLQ--DETSNRVRIAALKAIGSFLEFTND 193 (721)
Q Consensus 158 ~~-----------l~~~l~~~l~--~~~~~~vr~~a~~~l~~l~~~~~~ 193 (721)
.. .++.+...|+ +..+.+++..|+..+.+++...++
T Consensus 242 ~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~apd 290 (339)
T 3dad_A 242 RAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAALPD 290 (339)
T ss_dssp HHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcCCC
Confidence 11 1234455565 226888888888888877776554
No 143
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=89.46 E-value=1.9 Score=42.04 Aligned_cols=177 Identities=14% Similarity=0.082 Sum_probs=98.2
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHhc-CCC---cH-----HHHHHHHhcCCChhHHHHHHHHHHHhhhhhhcCCCHHH
Q 004960 5 LELLLIQFLMPDNDARRQAEDQIKRLAK-DPQ---VV-----PALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQL 75 (721)
Q Consensus 5 l~~ll~~~~s~d~~~r~~A~~~L~~~~~-~p~---~~-----~~l~~il~~~~~~~vr~~a~~~l~~~i~~~w~~~~~~~ 75 (721)
+..++..+.|+|+.+|.....-|-.++. -.+ |+ ..+...+-......--.-....+...++..-..+.++.
T Consensus 176 i~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fiye~e~~~GIaeLLeilgsIIngfa~PLKeeh 255 (392)
T 2jak_A 176 VLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEH 255 (392)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHH
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhccCCCCcHHH
Confidence 6788888899999999999888866543 221 11 12222222211111011122344444555433456777
Q ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHccccCCCCCcchHHHHHHhccCCcHHHHHHHHHHHHHhhhhh-hhccc
Q 004960 76 KQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETI-GQTFR 154 (721)
Q Consensus 76 ~~~i~~~ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~-~~~~~ 154 (721)
+..+.+.++.+.....-...-..++.++..+..++.. .-..++..++..---.+..-...-+.-+..+++.. ++++.
T Consensus 256 k~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~--L~~~vi~~LLk~WP~tns~KevlFL~eleeiLe~~~~~~f~ 333 (392)
T 2jak_A 256 KIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDST--LTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFV 333 (392)
T ss_dssp HHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGG--GHHHHHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCch--hHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHH
Confidence 7777777777665322222334666777666655431 11223333332221112222234555666666654 44566
Q ss_pred ccHHHHHHHHHHhhCCCCCHHHHHHHHHHH
Q 004960 155 PHFADMQALLLKCLQDETSNRVRIAALKAI 184 (721)
Q Consensus 155 ~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l 184 (721)
.....++..+.+++++ ++.+|-..|+...
T Consensus 334 ~i~~~lF~~la~ci~S-~hfqVAErAL~~w 362 (392)
T 2jak_A 334 KIMEPLFRQLAKCVSS-PHFQVAERALYYW 362 (392)
T ss_dssp HHHHHHHHHHHHHHTC-SSHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHcC-CcHHHHHHHHHHh
Confidence 6778888889999999 8999998887654
No 144
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=89.19 E-value=8.4 Score=34.61 Aligned_cols=99 Identities=9% Similarity=0.048 Sum_probs=67.7
Q ss_pred hcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhh--hhHHHH
Q 004960 346 CQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY--ESVLPC 423 (721)
Q Consensus 346 l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~~l~~ 423 (721)
+.++||.....-+..+..=.. .-...+..|.+.+++.++.++..|+..|..+..+++..+...+ ..++..
T Consensus 21 ~~~~dw~~ileicD~I~~~~~--------~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~ 92 (226)
T 3zyq_A 21 LLETDWESILQICDLIRQGDT--------QAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEE 92 (226)
T ss_dssp CSSCCHHHHHHHHHHHHTTSS--------CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHH
T ss_pred CCCcCHHHHHHHHHHHhCCCc--------cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHH
Confidence 455677665544444432111 1235577788888999999999999999999999988765432 345555
Q ss_pred HHHhcc-CCChHHHHHHHHHHHHHHHhhhh
Q 004960 424 ILNALE-DESDEVKEKSYYALAAFCEDMGE 452 (721)
Q Consensus 424 l~~~l~-~~~~~v~~~a~~al~~l~~~~~~ 452 (721)
|.+.+. ..+..|+..++..+......++.
T Consensus 93 l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 122 (226)
T 3zyq_A 93 LKDLLKRQVEVNVRNKILYLIQAWAHAFRN 122 (226)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHHhCC
Confidence 544443 34578999999988888877754
No 145
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=88.86 E-value=0.14 Score=46.99 Aligned_cols=92 Identities=14% Similarity=0.091 Sum_probs=64.8
Q ss_pred HHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHH
Q 004960 342 ASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVL 421 (721)
Q Consensus 342 l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l 421 (721)
+...+++++|.+|.++...++ -+.+..+++|+++.||..+...+ + .
T Consensus 151 l~~l~~D~d~~VR~~aa~~l~-----------------~~ll~~ll~D~d~~VR~aaa~~l-------~----------~ 196 (244)
T 1lrv_A 151 LFRFMRDEDRQVRKLVAKRLP-----------------EESLGLMTQDPEPEVRRIVASRL-------R----------G 196 (244)
T ss_dssp GGGTTTCSCHHHHHHHHHHSC-----------------GGGGGGSTTCSSHHHHHHHHHHC-------C----------G
T ss_pred HHHHHcCCCHHHHHHHHHcCC-----------------HHHHHHHHcCCCHHHHHHHHHhC-------C----------H
Confidence 335677899999998876411 13455677899999999888653 1 1
Q ss_pred HHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCChhHHHHHHHHHH
Q 004960 422 PCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIG 485 (721)
Q Consensus 422 ~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~ 485 (721)
+.+...+.|+++.||..+...++ .+.|..+ .++++.||..+...+|
T Consensus 197 ~~L~~Ll~D~d~~VR~~aa~~l~-----------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 197 DDLLELLHDPDWTVRLAAVEHAS-----------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp GGGGGGGGCSSHHHHHHHHHHSC-----------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred HHHHHHHcCCCHHHHHHHHHcCC-----------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 34666689999999998888754 1344445 8888999988876544
No 146
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=87.52 E-value=12 Score=31.36 Aligned_cols=99 Identities=9% Similarity=0.039 Sum_probs=68.1
Q ss_pred hcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcC-CCCHhHHHHHHHHHHHHHhhhhHHHHHhh--hhHHH
Q 004960 346 CQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALR-DPEQFVRGAASFALGQFAEYLQPEIVSHY--ESVLP 422 (721)
Q Consensus 346 l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~~l~ 422 (721)
+.++||.....-+..+..-.. .-...+..+.+.++ ..++.++..|+..|..+..+++..+...+ ..++.
T Consensus 29 l~~~Dw~~~leicD~I~~~~~--------~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~ 100 (157)
T 1elk_A 29 LQSEDWALNMEICDIINETEE--------GPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVE 100 (157)
T ss_dssp CSSCCHHHHHHHHHHHHHSSS--------HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHH
T ss_pred CCCcCHHHHHHHHHHHhCCCc--------cHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHH
Confidence 445677655544443332111 12355677788887 58999999999999999999998877543 45666
Q ss_pred H-HHHhcc---CCChHHHHHHHHHHHHHHHhhhh
Q 004960 423 C-ILNALE---DESDEVKEKSYYALAAFCEDMGE 452 (721)
Q Consensus 423 ~-l~~~l~---~~~~~v~~~a~~al~~l~~~~~~ 452 (721)
. +++.+. +++..|+..++..+......++.
T Consensus 101 e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f~~ 134 (157)
T 1elk_A 101 SVLVRTILPKNNPPTIVHDKVLNLIQSWADAFRS 134 (157)
T ss_dssp HHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhccCCCCcHHHHHHHHHHHHHHHHHcCC
Confidence 6 566653 33457999999999888887753
No 147
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=85.92 E-value=4.1 Score=36.67 Aligned_cols=76 Identities=14% Similarity=0.151 Sum_probs=57.2
Q ss_pred hhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccc--hHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHHHhhh
Q 004960 418 ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPF--LDPLMGKLLAALEN-SPRNLQETCMSAIGSVAAAAEQ 493 (721)
Q Consensus 418 ~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~--~~~i~~~l~~~l~~-~~~~v~~~~l~~l~~l~~~~~~ 493 (721)
...+..|.+.|++.++.++..|+..|..+++++|..+... -..+++.|.+++.. .+..|++.++..+...+...++
T Consensus 44 k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 122 (226)
T 3zyq_A 44 KYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRN 122 (226)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCC
Confidence 4778888899999999999999999999999998654321 12444444444433 4678999999999888887754
No 148
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=85.60 E-value=20 Score=32.34 Aligned_cols=57 Identities=19% Similarity=0.175 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhcccccH--HHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhh
Q 004960 132 EEHREVALILFSSLTETIGQTFRPHF--ADMQALLLKCLQDETSNRVRIAALKAIGSFLE 189 (721)
Q Consensus 132 ~~~~~~al~~l~~i~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~ 189 (721)
...|..++.++|.+++....+...++ .+++|++.+.++. ++.-.|..|...+.+++.
T Consensus 116 E~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~-GselSKtvAtfIlqKIL~ 174 (268)
T 2fv2_A 116 EYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMES-GSELSKTVATFILQKILL 174 (268)
T ss_dssp HHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHH-SCHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhh-ccHHHHHHHHHHHHHHhc
Confidence 36688999999999987544333332 5789999999988 888889888888888765
No 149
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=84.92 E-value=5.3 Score=32.39 Aligned_cols=95 Identities=15% Similarity=0.085 Sum_probs=58.6
Q ss_pred CcHHHHHHHHHHHHHHHcCccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcC----
Q 004960 313 LAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALR---- 388 (721)
Q Consensus 313 ~~~~~~a~~~l~~l~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~---- 388 (721)
|.+......-+..+......+.+..+++++.+.+++.++.++.-+|.+|..++..-...+...+..-...+-.+.+
T Consensus 25 ~~~pgylm~EIA~~T~~s~~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~ 104 (140)
T 1vdy_A 25 KVAPVYKLEEICDLLRSSHVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGH 104 (140)
T ss_dssp SCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCC
T ss_pred CCCcHHHHHHHHHHHHhcchhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCC
Confidence 4444333333333333333345688999999999999999999999999999876554444433322223322221
Q ss_pred -C------CCHhHHHHHHHHHHHHHh
Q 004960 389 -D------PEQFVRGAASFALGQFAE 407 (721)
Q Consensus 389 -d------~~~~vr~~a~~~l~~l~~ 407 (721)
| +...||..|-.++..+..
T Consensus 105 ~dp~~G~d~g~~VR~~AkEl~~ll~d 130 (140)
T 1vdy_A 105 PDPLKGDALNKAVRETAHETISAIFS 130 (140)
T ss_dssp CCTTTSSCHHHHHHHHHHHHHHHHTC
T ss_pred CCcccccchhHHHHHHHHHHHHHHhC
Confidence 2 236799888888776643
No 150
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=84.86 E-value=16 Score=32.68 Aligned_cols=75 Identities=8% Similarity=0.112 Sum_probs=56.7
Q ss_pred HHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhh--hhHHHHHHHhcc-CCChHHHHHHHHHHHHHHHhhhh
Q 004960 378 SVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY--ESVLPCILNALE-DESDEVKEKSYYALAAFCEDMGE 452 (721)
Q Consensus 378 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~~l~~l~~~l~-~~~~~v~~~a~~al~~l~~~~~~ 452 (721)
..+..|.+.+++.++.++..|+..|..+..+++..+...+ ..++..+.+.+. ..+..|+..++..+......++.
T Consensus 42 ~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 119 (220)
T 1dvp_A 42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFRS 119 (220)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 5566778888999999999999999999999987765432 345555555444 34578999988888888777653
No 151
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=84.46 E-value=11 Score=33.82 Aligned_cols=134 Identities=7% Similarity=-0.099 Sum_probs=80.3
Q ss_pred HHHHhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcC-CCCHhHHHHHHHHHHHHHhhhhHHHHHhhh
Q 004960 340 EFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALR-DPEQFVRGAASFALGQFAEYLQPEIVSHYE 418 (721)
Q Consensus 340 ~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 418 (721)
.++.+...++.-+.|..|+..++........ .-++.+-..+. ..++.+....+.+++.+....+ .
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~~-------~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~-------~ 123 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQRFSL-------EEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHL-------T 123 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGGCCH-------HHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSG-------G
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhhCCH-------HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHCh-------H
Confidence 4445555566667788888777765533222 22233333332 4577777766665665554322 2
Q ss_pred hHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhh
Q 004960 419 SVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQ 493 (721)
Q Consensus 419 ~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~ 493 (721)
.+.+.+.+-..+++..+|..|+.++... .-..+.+.+++.+...+.+++..|+..+-.+|..+....++
T Consensus 124 ~~~~~i~~W~~s~~~w~rR~ai~~~l~~------~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~ 192 (220)
T 2b6c_A 124 ELPTIFALFYGAENFWNRRVALNLQLML------KEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQ 192 (220)
T ss_dssp GHHHHHHHHTTCSSHHHHHHHHHTTTTC------GGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHH------HHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHH
Confidence 3555566777888888887776644211 11245566677666678888888888888877766554333
No 152
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=83.73 E-value=30 Score=32.77 Aligned_cols=111 Identities=13% Similarity=0.096 Sum_probs=84.7
Q ss_pred HHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHH----HhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhh--h
Q 004960 379 VLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIV----SHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMG--E 452 (721)
Q Consensus 379 i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~--~ 452 (721)
.+..+++.+..++-.|-..|+.++..+...-+.-.. ..++.++...-+.+.+++.-.|..++..|+.++..-. .
T Consensus 165 ~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~ 244 (341)
T 1upk_A 165 QFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFT 244 (341)
T ss_dssp GGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHH
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHH
Confidence 344667788889999999999998888665433322 3567788888888999999999999999999986532 2
Q ss_pred ccccchH--HHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q 004960 453 EILPFLD--PLMGKLLAALENSPRNLQETCMSAIGSVAA 489 (721)
Q Consensus 453 ~~~~~~~--~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~ 489 (721)
.+..|+. .-+..+..++.+..+.++-.|+.++...+.
T Consensus 245 vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 245 IMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVA 283 (341)
T ss_dssp HHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeee
Confidence 3334443 556678888999999999999998887665
No 153
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=83.13 E-value=8.8 Score=32.07 Aligned_cols=76 Identities=12% Similarity=0.181 Sum_probs=57.3
Q ss_pred hhHHHHHHHhcc-CCChHHHHHHHHHHHHHHHhhhhccccch--HHHHHH-HHHhhcC---CChhHHHHHHHHHHHHHHH
Q 004960 418 ESVLPCILNALE-DESDEVKEKSYYALAAFCEDMGEEILPFL--DPLMGK-LLAALEN---SPRNLQETCMSAIGSVAAA 490 (721)
Q Consensus 418 ~~~l~~l~~~l~-~~~~~v~~~a~~al~~l~~~~~~~~~~~~--~~i~~~-l~~~l~~---~~~~v~~~~l~~l~~l~~~ 490 (721)
...+..|.+.++ +.++.++..|+..|..++.++|..+...+ ..+++. |.+++.. ++..|++.++..+......
T Consensus 52 k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~ 131 (157)
T 1elk_A 52 KDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADA 131 (157)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 467788888887 57889999999999999999987665422 256665 5566532 3468999999999888887
Q ss_pred hhh
Q 004960 491 AEQ 493 (721)
Q Consensus 491 ~~~ 493 (721)
.+.
T Consensus 132 f~~ 134 (157)
T 1elk_A 132 FRS 134 (157)
T ss_dssp HTT
T ss_pred cCC
Confidence 753
No 154
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=81.27 E-value=6.7 Score=35.12 Aligned_cols=76 Identities=12% Similarity=0.148 Sum_probs=55.5
Q ss_pred hhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccch--HHHHHHHHHhhc-CCChhHHHHHHHHHHHHHHHhhh
Q 004960 418 ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFL--DPLMGKLLAALE-NSPRNLQETCMSAIGSVAAAAEQ 493 (721)
Q Consensus 418 ~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~--~~i~~~l~~~l~-~~~~~v~~~~l~~l~~l~~~~~~ 493 (721)
...+..|.+.|++.++.++..|+..|..++.+++..+...+ ..+++.|.+++. ..+..|++.+++.+.......++
T Consensus 41 k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 119 (220)
T 1dvp_A 41 KNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFRS 119 (220)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 36677788888999999999999999999999976543221 234444444444 34678999999888888777653
No 155
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=79.78 E-value=24 Score=28.90 Aligned_cols=97 Identities=13% Similarity=0.221 Sum_probs=60.9
Q ss_pred HhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchH-HHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhh
Q 004960 415 SHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLD-PLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQ 493 (721)
Q Consensus 415 ~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~-~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~ 493 (721)
++.+.++..+.+.+....+.-+..++..+..++++.+.....++. .+.+.+.......+...|..+...+...-...+.
T Consensus 39 ~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W~~~~~~ 118 (144)
T 1sz9_A 39 SCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWLNPNDT 118 (144)
T ss_dssp GGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHHTSGGGC
T ss_pred HHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhCcccC
Confidence 355677777777777777888999999999999998765443333 3334444555555777787777766665543322
Q ss_pred cchhhHHHHHHHHHHHHh
Q 004960 494 AFIPYAERVLELLKIFMV 511 (721)
Q Consensus 494 ~~~~~~~~i~~~l~~~l~ 511 (721)
...-|-+.++..+.+.+.
T Consensus 119 ~~~vF~~~~l~~i~~~l~ 136 (144)
T 1sz9_A 119 GLPLFEGSALEKIEQFLI 136 (144)
T ss_dssp SSCSSCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 212233445555555554
No 156
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=79.29 E-value=0.63 Score=42.54 Aligned_cols=67 Identities=24% Similarity=0.254 Sum_probs=47.1
Q ss_pred HhhhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHH
Q 004960 343 SVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLP 422 (721)
Q Consensus 343 ~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~ 422 (721)
...+++++|.+|.++...+ . .+.+..+++|+++.||..+...++ .+
T Consensus 176 ~~ll~D~d~~VR~aaa~~l---~--------------~~~L~~Ll~D~d~~VR~~aa~~l~-----------------~~ 221 (244)
T 1lrv_A 176 GLMTQDPEPEVRRIVASRL---R--------------GDDLLELLHDPDWTVRLAAVEHAS-----------------LE 221 (244)
T ss_dssp GGSTTCSSHHHHHHHHHHC---C--------------GGGGGGGGGCSSHHHHHHHHHHSC-----------------HH
T ss_pred HHHHcCCCHHHHHHHHHhC---C--------------HHHHHHHHcCCCHHHHHHHHHcCC-----------------HH
Confidence 3467889999999887642 1 145677788999999998888754 12
Q ss_pred HHHHhccCCChHHHHHHHHHHH
Q 004960 423 CILNALEDESDEVKEKSYYALA 444 (721)
Q Consensus 423 ~l~~~l~~~~~~v~~~a~~al~ 444 (721)
.+.. |+|+++.||..+...|+
T Consensus 222 ~L~~-L~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 222 ALRE-LDEPDPEVRLAIAGRLG 242 (244)
T ss_dssp HHHH-CCCCCHHHHHHHHCCC-
T ss_pred HHHH-ccCCCHHHHHHHHHHhC
Confidence 3333 48888889988776543
No 157
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=78.04 E-value=9.4 Score=30.96 Aligned_cols=72 Identities=14% Similarity=0.115 Sum_probs=49.9
Q ss_pred hHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhcc------CC----C--hHHHHHHHHH
Q 004960 375 KLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALE------DE----S--DEVKEKSYYA 442 (721)
Q Consensus 375 ~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~------~~----~--~~v~~~a~~a 442 (721)
.+..+++.|.+.|++.++.++.-|+.+|..++..-.+.+...+..-+.. ++.+. ++ + ..||..|-.+
T Consensus 46 ~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~-Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl 124 (140)
T 1vdy_A 46 IVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVA-VRNLFHYKGHPDPLKGDALNKAVRETAHET 124 (140)
T ss_dssp HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHH-HHTTTTCCCCCCTTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHH-HHHHHhcCCCCCcccccchhHHHHHHHHHH
Confidence 3578999999999999999999999999999987777666544332222 22222 21 1 3588777776
Q ss_pred HHHHH
Q 004960 443 LAAFC 447 (721)
Q Consensus 443 l~~l~ 447 (721)
+.-+.
T Consensus 125 ~~ll~ 129 (140)
T 1vdy_A 125 ISAIF 129 (140)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 66543
No 158
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=75.99 E-value=51 Score=30.72 Aligned_cols=108 Identities=12% Similarity=0.131 Sum_probs=59.8
Q ss_pred HHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHH---HhhhhHHHHHHHhcc----C---CChHHHHHHHHHHHHHHH
Q 004960 379 VLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIV---SHYESVLPCILNALE----D---ESDEVKEKSYYALAAFCE 448 (721)
Q Consensus 379 i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~---~~~~~~l~~l~~~l~----~---~~~~v~~~a~~al~~l~~ 448 (721)
++..+. +.....+.+|..|...|+.....-|+.+. ..++.++..++..|. . ....++.+-+.+|..++.
T Consensus 72 lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~ 150 (315)
T 3qml_C 72 LLANLS-LNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPV 150 (315)
T ss_dssp HHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCC
T ss_pred HHHHHH-hhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhc
Confidence 334333 33345677999999999998888776543 233455554444332 2 223455556666666655
Q ss_pred hhhhccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q 004960 449 DMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAA 489 (721)
Q Consensus 449 ~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~ 489 (721)
.. ..+..+--..+..+.... ..++.++..+++.+..+..
T Consensus 151 ~~-~~F~~~~m~~L~~ly~~~-~~d~~~k~Kvl~li~d~f~ 189 (315)
T 3qml_C 151 TS-EDLPIYSTVVLQNVYERN-NKDKQLQIKVLELISKILK 189 (315)
T ss_dssp CS-TTC--CCHHHHHHHHHHT-TTCHHHHHHHHHHHHHHHH
T ss_pred Ch-HhhhhccHHHHHHHHccC-CCCHHHHHHHHHHHHHHcc
Confidence 43 223333222333333332 3378888888888777664
No 159
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=75.23 E-value=27 Score=28.87 Aligned_cols=113 Identities=5% Similarity=0.015 Sum_probs=71.1
Q ss_pred hhcCCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCC-CCHhHHHHHHHHHHHHHhhhhHHHHHhh--hhHH
Q 004960 345 SCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRD-PEQFVRGAASFALGQFAEYLQPEIVSHY--ESVL 421 (721)
Q Consensus 345 ~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~~l 421 (721)
.+.++||.....-+..+..=.. .-...+..+.+.+.. +++.+...|+..|..+..+++..+...+ ..++
T Consensus 28 ~l~~~Dw~~ileicD~In~~~~--------~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl 99 (152)
T 3rru_A 28 GVQTEDWGQFMHICDIINTTQD--------GPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFV 99 (152)
T ss_dssp SCCSCCHHHHHHHHHHHHHSTT--------HHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHH
T ss_pred CCCCccHHHHHHHHHHHhCCCc--------cHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhH
Confidence 3456777654444433332111 123556677777774 6898888899999999999998876544 3566
Q ss_pred HH-HHHhccC---CChHHHHHHHHHHHHHHHhhhhcc-ccchHHHHHHH
Q 004960 422 PC-ILNALED---ESDEVKEKSYYALAAFCEDMGEEI-LPFLDPLMGKL 465 (721)
Q Consensus 422 ~~-l~~~l~~---~~~~v~~~a~~al~~l~~~~~~~~-~~~~~~i~~~l 465 (721)
.. +.+.+.. .+..|+..++..+......++..- .+++..+...|
T Consensus 100 ~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F~~~p~l~~i~~~Y~~L 148 (152)
T 3rru_A 100 KENLVKLLNPRYNLPLDIQNRILNFIKTWSQGFPGGVDVSEVKEVYLDL 148 (152)
T ss_dssp TTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCCSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHH
Confidence 54 5555543 234799999999998887775421 23444444433
No 160
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=74.51 E-value=7.8 Score=34.70 Aligned_cols=109 Identities=9% Similarity=-0.050 Sum_probs=68.3
Q ss_pred hHHHHHHhhhc-CCChhhHhHHHHHHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHH
Q 004960 337 PVFEFASVSCQ-NASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVS 415 (721)
Q Consensus 337 ~i~~~l~~~l~-~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 415 (721)
..++.+...+. -++|..-...+.+++.+... +-..+.+.+.....|++.-+|..|+.++ + .+.. ..
T Consensus 89 ~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~-------~~~~~~~~i~~W~~s~~~w~rR~ai~~~--l-~~~~---~~ 155 (220)
T 2b6c_A 89 EEVVAFKAYVPQKAWWDSVDAWRKFFGSWVAL-------HLTELPTIFALFYGAENFWNRRVALNLQ--L-MLKE---KT 155 (220)
T ss_dssp HHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHH-------SGGGHHHHHHHHTTCSSHHHHHHHHHTT--T-TCGG---GC
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-------ChHHHHHHHHHHHcCCCHHHHHHHHHHH--H-HHHH---CC
Confidence 44444455554 45777777665555555432 2223456677888899999988887644 2 1111 13
Q ss_pred hhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccch
Q 004960 416 HYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFL 458 (721)
Q Consensus 416 ~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~ 458 (721)
+.+.+++.+-..+.|+..-|+.+..|+|..+....++.+.+|+
T Consensus 156 ~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v~~fl 198 (220)
T 2b6c_A 156 NQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWVEELM 198 (220)
T ss_dssp CHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 4455666666688888888999999999988766554443433
No 161
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=67.76 E-value=71 Score=28.90 Aligned_cols=95 Identities=13% Similarity=0.228 Sum_probs=63.0
Q ss_pred hHHHHHHHHHhhccH---HHHHHhHHHH-HHHHHhhcCC-CCHhHHHHHHHHHHHHHhhhhHHHHHhh--hhHHHHHHHh
Q 004960 355 EAAVTAIGIISEGCA---EWMKEKLESV-LHIVLGALRD-PEQFVRGAASFALGQFAEYLQPEIVSHY--ESVLPCILNA 427 (721)
Q Consensus 355 ~~al~~l~~i~~~~~---~~~~~~l~~i-~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~~l~~l~~~ 427 (721)
..++..+.+++.+.. .++..+++-. .|.+...-++ +...+|-+++-.+|.+.+.-.+++..|+ .+++|..++.
T Consensus 74 cnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLri 153 (268)
T 2fv2_A 74 CNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRI 153 (268)
T ss_dssp HHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHH
Confidence 345555666665432 2333333332 2333322222 3568999999999999988777777765 6799999999
Q ss_pred ccCCChHHHHHHHHHHHHHHHh
Q 004960 428 LEDESDEVKEKSYYALAAFCED 449 (721)
Q Consensus 428 l~~~~~~v~~~a~~al~~l~~~ 449 (721)
+...+.-.+..|...+.+++..
T Consensus 154 me~GselSKtvAtfIlqKIL~d 175 (268)
T 2fv2_A 154 MESGSELSKTVATFILQKILLD 175 (268)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHS
T ss_pred HhhccHHHHHHHHHHHHHHhcc
Confidence 9988877777777777777643
No 162
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=67.19 E-value=71 Score=28.64 Aligned_cols=131 Identities=8% Similarity=0.034 Sum_probs=83.6
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHH-HHHHHHHccccCCCCCcc
Q 004960 40 LVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEHSAPVRRASA-NVVSIIAKYAVPAGEWPD 118 (721)
Q Consensus 40 l~~il~~~~~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i~~~ll~~l~~e~~~~vr~~~~-~~l~~i~~~~~~~~~~~~ 118 (721)
++.-+-.+..-+.|.+|+.+++.. .+.++++....+.. + +..-.++.+....| .+++.+.... |+
T Consensus 65 ~~~~L~~~~~~E~r~~ai~~l~~~----~k~~~~~~l~~~~~-~---l~~~~nWd~~D~~a~~~~g~~~~~~------p~ 130 (232)
T 3jxy_A 65 IIRELWDLPEREFQAAALDIMQKY----KKHINETHIPFLEE-L---IVTKSWWDSVDSIVPTFLGDIFLKH------PE 130 (232)
T ss_dssp HHHHHHTSSBHHHHHHHHHHHHHT----GGGCCGGGHHHHHH-H---HTSSCCHHHHHHHTTTHHHHHHHHC------GG
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHH----HHhCCHHHHHHHHH-H---HccCCChHHHHHhhHHHHHHHHHHC------HH
Confidence 444444444566888888887643 23345555555543 2 22346888887775 5667766542 23
Q ss_pred -hHHHHHHhccCCcHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhc
Q 004960 119 -LLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFT 191 (721)
Q Consensus 119 -ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~ 191 (721)
+.+.+.+...|++.-.|..|+..+-.. . .......+..++...+.| ++.-|+.+..++|..+....
T Consensus 131 ~~~~~l~~W~~s~~~w~rR~ai~~~l~~---~---~~~d~~~~~~~i~~~~~d-~~~yV~kAvgW~Lr~~~k~~ 197 (232)
T 3jxy_A 131 LISAYIPKWIASDNIWLQRAAILFQLKY---K---QKMDEELLFWIIGQLHSS-KEFFIQKAIGWVLREYAKTN 197 (232)
T ss_dssp GGGGTHHHHHHSSCHHHHHHHHHTTTTC---G---GGCCHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHH---H---hCCCHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhhC
Confidence 456677888888887777776554221 1 123345667777778888 89999999999998876653
No 163
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=62.72 E-value=57 Score=26.03 Aligned_cols=100 Identities=11% Similarity=0.156 Sum_probs=61.1
Q ss_pred HHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhcc-c
Q 004960 377 ESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEI-L 455 (721)
Q Consensus 377 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~-~ 455 (721)
+..+...+..|+.....++..+.|++... ++.+.++..+.+.+....+.-|...+..+..++..++..- .
T Consensus 7 e~~l~~~L~~L~~s~~sI~~~s~w~l~h~---------~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~~~ 77 (132)
T 4flb_A 7 ESSLDRKFQSVTNTMESIQGLSSWCIENK---------KHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAI 77 (132)
T ss_dssp HHHHHHHHHHCCSSHHHHHHHHHHHHHTG---------GGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTCT
T ss_pred HHHHHHHHHHCcccHHHHHHHHHHHHHhH---------HHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccChH
Confidence 34455556677877888988888887642 2345666777777777777788899999999998874321 2
Q ss_pred cchHHHHHHHHHhhcC-CChhHHHHHHHHHH
Q 004960 456 PFLDPLMGKLLAALEN-SPRNLQETCMSAIG 485 (721)
Q Consensus 456 ~~~~~i~~~l~~~l~~-~~~~v~~~~l~~l~ 485 (721)
.|.+.+-+.+...+.. .++..+..+..++.
T Consensus 78 ~f~~~f~~~l~~~~~~~~~~~~~~kl~~ll~ 108 (132)
T 4flb_A 78 IFRESFADVLPEAAALVKDPSVSKSVERIFK 108 (132)
T ss_dssp HHHHHHHTTHHHHHHTTCSTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 2333333333333322 23445555544443
No 164
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=62.38 E-value=18 Score=32.74 Aligned_cols=73 Identities=14% Similarity=0.135 Sum_probs=51.8
Q ss_pred hHHHHHHhhhcCCChhhHhHHHH----HHHHHhhccHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhH
Q 004960 337 PVFEFASVSCQNASPKYREAAVT----AIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQP 411 (721)
Q Consensus 337 ~i~~~l~~~l~~~~~~~r~~al~----~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 411 (721)
...+.+...+.|++.-.|.+|+. .+..... ...-...++.++..+...+.|++..|+.+..|+|..++...++
T Consensus 108 ~~~~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~--k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~~~~ 184 (235)
T 1t06_A 108 IAQDVADKWIASGDELKMSAGWSCYCWLLGNRKD--NAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAISYVP 184 (235)
T ss_dssp SHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHSCG--GGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHCGG
T ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHHHhhccc--cCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhhCHH
Confidence 35666777888888777777776 4444111 1111345667788888889999999999999999988877653
No 165
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=62.05 E-value=1.1e+02 Score=28.87 Aligned_cols=112 Identities=8% Similarity=-0.011 Sum_probs=70.5
Q ss_pred HHHHHHHhhcCC-CCHhHHHHHHHHHHHHHhhhhH--HHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhc-
Q 004960 378 SVLHIVLGALRD-PEQFVRGAASFALGQFAEYLQP--EIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEE- 453 (721)
Q Consensus 378 ~i~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~- 453 (721)
.++..+...+.+ ..|..+-.+++++.++...-.. .+....+.+++.+...+.+++..+|.++...+-++.-.....
T Consensus 147 ~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~ 226 (304)
T 3ebb_A 147 QFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDH 226 (304)
T ss_dssp HHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcC
Confidence 455555566653 3566777888888887665321 222455778888887777778889999999998887655221
Q ss_pred cccchHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHH
Q 004960 454 ILPFLDPLMGKLLAALEN-SPRNLQETCMSAIGSVAA 489 (721)
Q Consensus 454 ~~~~~~~i~~~l~~~l~~-~~~~v~~~~l~~l~~l~~ 489 (721)
-.+-...++..+..++.. .+.+....++.++|.++.
T Consensus 227 ~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~ 263 (304)
T 3ebb_A 227 NIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLIS 263 (304)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHh
Confidence 112233455555555543 356666677777777764
No 166
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=60.75 E-value=51 Score=29.62 Aligned_cols=91 Identities=8% Similarity=-0.118 Sum_probs=50.4
Q ss_pred CCCHhHHHHHH-HHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHH
Q 004960 389 DPEQFVRGAAS-FALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLA 467 (721)
Q Consensus 389 d~~~~vr~~a~-~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~ 467 (721)
.+++.+....+ .++|.+....+ ..+.+.+.+-..+++..+|..++..+... ........+...+..
T Consensus 107 ~~nWd~~D~~a~~~~g~~~~~~p-------~~~~~~l~~W~~s~~~w~rR~ai~~~l~~------~~~~d~~~~~~~i~~ 173 (232)
T 3jxy_A 107 KSWWDSVDSIVPTFLGDIFLKHP-------ELISAYIPKWIASDNIWLQRAAILFQLKY------KQKMDEELLFWIIGQ 173 (232)
T ss_dssp SCCHHHHHHHTTTHHHHHHHHCG-------GGGGGTHHHHHHSSCHHHHHHHHHTTTTC------GGGCCHHHHHHHHHH
T ss_pred CCChHHHHHhhHHHHHHHHHHCH-------HHHHHHHHHHhcCCchHHHHHHHHHHHHH------HhCCCHHHHHHHHHH
Confidence 45666655442 44454443322 12334455556777777777666554221 112233455555666
Q ss_pred hhcCCChhHHHHHHHHHHHHHHHhh
Q 004960 468 ALENSPRNLQETCMSAIGSVAAAAE 492 (721)
Q Consensus 468 ~l~~~~~~v~~~~l~~l~~l~~~~~ 492 (721)
.+.+++..|+..+-.+|..+....+
T Consensus 174 ~~~d~~~yV~kAvgW~Lr~~~k~~p 198 (232)
T 3jxy_A 174 LHSSKEFFIQKAIGWVLREYAKTNP 198 (232)
T ss_dssp HTTCCCHHHHHHHHHHHHHHTTTCH
T ss_pred hcCCHHHHHHHHHHHHHHHHHhhCH
Confidence 6777788888888777766655433
No 167
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=60.38 E-value=17 Score=30.11 Aligned_cols=76 Identities=8% Similarity=0.185 Sum_probs=54.9
Q ss_pred hhHHHHHHHhccC-CChHHHHHHHHHHHHHHHhhhhccccch--HHHHHH-HHHhhcCC---ChhHHHHHHHHHHHHHHH
Q 004960 418 ESVLPCILNALED-ESDEVKEKSYYALAAFCEDMGEEILPFL--DPLMGK-LLAALENS---PRNLQETCMSAIGSVAAA 490 (721)
Q Consensus 418 ~~~l~~l~~~l~~-~~~~v~~~a~~al~~l~~~~~~~~~~~~--~~i~~~-l~~~l~~~---~~~v~~~~l~~l~~l~~~ 490 (721)
...+..|.+.++. .++.++..|+..|..+++++|..+...+ ..+++. |.+++... +..|++.++..+...+..
T Consensus 52 keA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~ 131 (152)
T 3rru_A 52 KDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQG 131 (152)
T ss_dssp HHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHH
Confidence 4677888888874 5677888899999999999987655332 245543 55555432 357999999999888877
Q ss_pred hhh
Q 004960 491 AEQ 493 (721)
Q Consensus 491 ~~~ 493 (721)
.++
T Consensus 132 F~~ 134 (152)
T 3rru_A 132 FPG 134 (152)
T ss_dssp CSS
T ss_pred hCC
Confidence 654
No 168
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=55.03 E-value=24 Score=28.41 Aligned_cols=65 Identities=14% Similarity=0.154 Sum_probs=44.8
Q ss_pred HHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhh
Q 004960 379 VLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGE 452 (721)
Q Consensus 379 i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~ 452 (721)
.+...+..|+...+.++..+.|++... .+.+.++..+.+.+....+.-|...+..+..++..++.
T Consensus 8 ~l~~~L~~L~~s~~sI~~~s~w~l~~~---------~~a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ns~~ 72 (135)
T 4fu3_A 8 ALEKKLSELSNSQQSVQTLSLWLIHHR---------KHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKR 72 (135)
T ss_dssp HHHHHHHHCCSSTTHHHHHHHHHHHTG---------GGHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHh
Confidence 344455667777888999988887642 23445666666666655556678888999999887743
No 169
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=54.34 E-value=1.4e+02 Score=27.97 Aligned_cols=115 Identities=9% Similarity=0.089 Sum_probs=69.7
Q ss_pred cchHHHHHHhccC-CcHHHHHHHHHHHHHhhhhhh--hcccccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhhhcCC
Q 004960 117 PDLLPFLFQFSQS-EQEEHREVALILFSSLTETIG--QTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTND 193 (721)
Q Consensus 117 ~~ll~~l~~~l~~-~~~~~~~~al~~l~~i~~~~~--~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~ 193 (721)
..++..+...+.+ ..+..+..+++++.+++.... ..+....+.+++.+...+.+ .+..+|.++...+.++.-+...
T Consensus 146 ~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~-~nknl~iA~ATl~~NlAv~~~~ 224 (304)
T 3ebb_A 146 AQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSG-SNKNIHIALATLALNYSVCFHK 224 (304)
T ss_dssp HHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSS-CCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcC-CChhHHHHHHHHHHHHHHHHhh
Confidence 3455555555543 345567788888888886542 23344667888888888777 7899999998888877543211
Q ss_pred hhhHHHHHhhHHHHHHHHHHHhh-cCCHHHHHHHHHHHHHHhcC
Q 004960 194 GAEVVKFREFIPSILNVSRQCLA-SGEEDVAVIAFEIFDELIES 236 (721)
Q Consensus 194 ~~~~~~~~~~l~~ll~~l~~~l~-~~~~~~~~~a~~~l~~l~~~ 236 (721)
......-.. ++..+...+. ..+.+..-.++-+++.++..
T Consensus 225 ~~~~~~~~~----ll~~l~~il~~~~d~EalyR~LvALGtL~~~ 264 (304)
T 3ebb_A 225 DHNIEGKAQ----CLSLISTILEVVQDLEATFRLLVALGTLISD 264 (304)
T ss_dssp SCCHHHHHH----HHHHHHHHHTTCCCHHHHHHHHHHHHHHHTT
T ss_pred cCCchHHHH----HHHHHHHHHhccCCHHHHHHHHHHHHHHHhC
Confidence 001111112 3333333332 35677777788888888754
No 170
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=53.31 E-value=1.7e+02 Score=28.57 Aligned_cols=60 Identities=12% Similarity=0.059 Sum_probs=44.1
Q ss_pred ChhhHhHHHHHHHHHhhccH--HHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhh
Q 004960 350 SPKYREAAVTAIGIISEGCA--EWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQ 410 (721)
Q Consensus 350 ~~~~r~~al~~l~~i~~~~~--~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 410 (721)
+.......+.|+.++..... +.+.. -+..+..+..++..+++.+|..++..|+.+|..-+
T Consensus 133 d~~~q~~~l~CLkalmN~~~G~~~vl~-~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~ 194 (383)
T 3eg5_B 133 DSRNQHEIIRCLKAFMNNKFGIKTMLE-TEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQ 194 (383)
T ss_dssp CHHHHHHHHHHHHHHTSSHHHHHHHHT-CSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCS
T ss_pred hHHHHHHHHHHHHHHhcchhhHHHHHc-ChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcC
Confidence 44566778889999886532 11111 24567888889999999999999999999987653
No 171
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=52.18 E-value=90 Score=25.43 Aligned_cols=73 Identities=10% Similarity=0.227 Sum_probs=45.8
Q ss_pred HhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhcc----ccchHHHHHHHHHhhc---CCChhHHHHHHHHHHHH
Q 004960 415 SHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEI----LPFLDPLMGKLLAALE---NSPRNLQETCMSAIGSV 487 (721)
Q Consensus 415 ~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~----~~~~~~i~~~l~~~l~---~~~~~v~~~~l~~l~~l 487 (721)
++...++..+.+.+....+.-+..++..+..+++..+... .+|.+.+...|.+.+. ..++..|..+...+...
T Consensus 38 ~~~~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~~~k~~~~~~~f~~~F~~~L~~~f~~~~~~~~~~r~kl~rLl~iW 117 (145)
T 3d9j_A 38 KFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLW 117 (145)
T ss_dssp GGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHCTTTCSHHHHHHHHHHHHHHHHTSSCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCccceeehhhhhHHHHHHhhhhcCCccccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 3556777777777776677888999999999999986532 2455544444444322 22356666555544433
No 172
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=49.80 E-value=3.6e+02 Score=31.29 Aligned_cols=154 Identities=11% Similarity=-0.025 Sum_probs=90.9
Q ss_pred CChHHHHHHHHhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHcCccccHhHHHHHHhhhcCCChhhHhHHHHHHHHHhhc
Q 004960 288 KLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEG 367 (721)
Q Consensus 288 ~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~al~~l~~i~~~ 367 (721)
.+.+.++...-.++...+ ..++..+..+...+-..+....-..++..+...+.+.+.....+|+..+..++..
T Consensus 396 ~~f~siL~La~~Ll~S~~-------~~v~~Fg~~lY~~lF~~fd~~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~ 468 (1323)
T 3s4w_B 396 DICPSILLLAQTLFHSQD-------QRIILFGSLLYKYAFKFFDTYCQQEVVGALVTHVCSGTEAEVDTALDVLLELIVL 468 (1323)
T ss_dssp TSHHHHHHHHHHHHTSSS-------HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHHHHhccchhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhc
Confidence 345555554444454443 4667777777777777665433456777777666667777788899999999988
Q ss_pred cHHHHHHhHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhh-hhHHHHHHHhccCCChHHHHHHHHHHHHH
Q 004960 368 CAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY-ESVLPCILNALEDESDEVKEKSYYALAAF 446 (721)
Q Consensus 368 ~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~l~~l~~~l~~~~~~v~~~a~~al~~l 446 (721)
.+..+.++- ..+..++..+.+-++.=-+..+..++.++-.-+......+ +++.-.+-+.+.+++...+....-+-..+
T Consensus 469 ~~~~l~~~a-~~l~giLD~l~~l~~~QiRklf~iL~~laf~~~~~~~~~i~ddl~ivIRKQLs~~~~~~KriGIIGav~~ 547 (1323)
T 3s4w_B 469 NASAMRLNA-AFVKGILDYLENMSPQQIRKIFCILSTLAFSQQPGTSNHIQDDMHLVIRKQLSSTVFKYKLIGIIGAVTM 547 (1323)
T ss_dssp CHHHHHHTH-HHHHGGGGGGGGCCHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred CHHHHhHHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHHHcCCCCCcchhhHHhHHHHHHHHHhCCchhhhhhhHHHHHHH
Confidence 777776653 3455566666655544334557777777643322101122 33444455667777766654433333333
Q ss_pred HHh
Q 004960 447 CED 449 (721)
Q Consensus 447 ~~~ 449 (721)
+..
T Consensus 548 v~~ 550 (1323)
T 3s4w_B 548 AGI 550 (1323)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 173
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=47.43 E-value=1.1e+02 Score=24.82 Aligned_cols=53 Identities=6% Similarity=0.077 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhh
Q 004960 437 EKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQ 493 (721)
Q Consensus 437 ~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~ 493 (721)
...+..|..++.... .+...+++.+.+.+....+.-+-.++..+..++...+.
T Consensus 23 ~~~I~~LT~~a~~~~----~~~~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~~~ 75 (145)
T 3d9j_A 23 KAKMTQITKAAIKAI----KFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRH 75 (145)
T ss_dssp HHHHHHHHHHHHHTG----GGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCCccceeehhhhhHHHHHHhhh
Confidence 334455555554332 35677787777777777778888999999999988876
No 174
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=46.99 E-value=1.1e+02 Score=24.38 Aligned_cols=106 Identities=11% Similarity=0.120 Sum_probs=64.0
Q ss_pred hhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhcc
Q 004960 416 HYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAF 495 (721)
Q Consensus 416 ~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~~~~ 495 (721)
.++..+...++.|......++..+.|++.+. .+.+.|++.+.+.+....++-|-..+-.+..++...+...
T Consensus 5 ~~e~~l~~~L~~L~~s~~sI~~~s~w~l~h~---------~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~ 75 (132)
T 4flb_A 5 ALESSLDRKFQSVTNTMESIQGLSSWCIENK---------KHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKN 75 (132)
T ss_dssp HHHHHHHHHHHHCCSSHHHHHHHHHHHHHTG---------GGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHCcccHHHHHHHHHHHHHhH---------HHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccC
Confidence 3445566667777766555666666666532 3456777777777777777778888988998888775432
Q ss_pred -hhhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHH
Q 004960 496 -IPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVA 532 (721)
Q Consensus 496 -~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~ 532 (721)
..|.+.+.+.+...+....++ ..+.+...++..--
T Consensus 76 ~~~f~~~f~~~l~~~~~~~~~~--~~~~kl~~ll~iW~ 111 (132)
T 4flb_A 76 AIIFRESFADVLPEAAALVKDP--SVSKSVERIFKIWE 111 (132)
T ss_dssp CTHHHHHHHTTHHHHHHTTCST--TTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHhc
Confidence 234444545555555443233 23444445544443
No 175
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=43.31 E-value=1.2e+02 Score=24.08 Aligned_cols=65 Identities=17% Similarity=0.191 Sum_probs=44.3
Q ss_pred hHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhh
Q 004960 419 SVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAE 492 (721)
Q Consensus 419 ~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~v~~~~l~~l~~l~~~~~ 492 (721)
+.+...++.|......++..+.|++.+. .+.+.+++.+.+.+....+.-|-..+..+..++....
T Consensus 7 ~~l~~~L~~L~~s~~sI~~~s~w~l~~~---------~~a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ns~ 71 (135)
T 4fu3_A 7 SALEKKLSELSNSQQSVQTLSLWLIHHR---------KHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSK 71 (135)
T ss_dssp HHHHHHHHHCCSSTTHHHHHHHHHHHTG---------GGHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH
Confidence 4455566777766666777777776532 3456677777777766666667788888888877664
No 176
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=42.45 E-value=2.2e+02 Score=26.62 Aligned_cols=192 Identities=10% Similarity=0.061 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHhhh--hHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhccc-------cchHHHHHH
Q 004960 394 VRGAASFALGQFAEYL--QPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEIL-------PFLDPLMGK 464 (721)
Q Consensus 394 vr~~a~~~l~~l~~~~--~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~-------~~~~~i~~~ 464 (721)
--..|+..|..++... +..+..+=-.++..|+ ......+.++..+...++..+++-++.+. .|+..+++.
T Consensus 44 ~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~~ 122 (315)
T 3qml_C 44 RLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMAA 122 (315)
T ss_dssp HHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHHH
Confidence 3444555555554332 2222222123444444 22334466888888888877776654332 466667766
Q ss_pred HHHhhcCC---ChhHHHHHHHHHHHHHHHhhhcchhh-HHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHh------
Q 004960 465 LLAALENS---PRNLQETCMSAIGSVAAAAEQAFIPY-AERVLELLKIFMVLTNDEDLRSRARATELLGLVAES------ 534 (721)
Q Consensus 465 l~~~l~~~---~~~v~~~~l~~l~~l~~~~~~~~~~~-~~~i~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~------ 534 (721)
|...+..+ ...++...+.+|..|+... .+|..+ ++.+..+ +... ..+...+.++++.+..+-..
T Consensus 123 L~~~~~~~~~~~~~l~KR~LsII~~L~~~~-~~F~~~~m~~L~~l----y~~~-~~d~~~k~Kvl~li~d~f~~~~~~~~ 196 (315)
T 3qml_C 123 LSNLNDSNHRSSNILIKRYLSILNELPVTS-EDLPIYSTVVLQNV----YERN-NKDKQLQIKVLELISKILKADMYEND 196 (315)
T ss_dssp HHHHHCC--CCCHHHHHHHHHHHHHSCCCS-TTC--CCHHHHHHH----HHHT-TTCHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHhhcccchhHHHHHHHHHHHHHHhcCh-HhhhhccHHHHHHH----HccC-CCCHHHHHHHHHHHHHHccccccccc
Confidence 66555443 2334445555554444332 334333 3333333 3321 22345666777777666531
Q ss_pred -----hchhhc---cCChHHHHHHHHhccCCC--ChhhHHHHHHHHHHHHHHcccCcccchhhhHHHHH
Q 004960 535 -----VGRARM---EPILPPFVEAAISGFGLE--FSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAF 593 (721)
Q Consensus 535 -----~~~~~~---~~~~~~i~~~l~~~l~~~--~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll 593 (721)
..+... .|.+....+.+-..+++. +..-.+..+..+..+=+..|.++.+. +.++..|-
T Consensus 197 ~~~~~~~kR~~e~~~~~~q~w~~~~q~~iq~k~~dE~~~r~fF~~L~~ik~~~~~~lK~~-~~FLnWLa 264 (315)
T 3qml_C 197 DTNLILFKRNAENWSSNLQEWANEFQEMVQNKSIDELHTRTFFDTLYNLKKIFKSDITIN-KGFLNWLA 264 (315)
T ss_dssp -----------------CHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHGGGSCCC-HHHHHHHH
T ss_pred ccccchhhhcccccCchHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHhcccccCCC-HHHHHHHH
Confidence 111111 244444444444445433 33233446677888888887665442 33444443
No 177
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=38.30 E-value=1.4e+02 Score=24.20 Aligned_cols=95 Identities=7% Similarity=0.018 Sum_probs=57.4
Q ss_pred HHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhhhHHHHHhhh-hHHHHHHHhccCCChHHHHHHHHHHHHHHHhhhhcc
Q 004960 376 LESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYE-SVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEI 454 (721)
Q Consensus 376 l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~ 454 (721)
-+.++..+.+.+....|.-+..+++.+..++...+..+...+. .+.+.+.......++.+|......+..--+..+...
T Consensus 41 a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W~~~~~~~~ 120 (144)
T 1sz9_A 41 AQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWLNPNDTGL 120 (144)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHHTSGGGCSS
T ss_pred HHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhCcccCCC
Confidence 3456666666666667888899999999999988776666554 444444455555566677665555554433322221
Q ss_pred ccchHHHHHHHHHhhc
Q 004960 455 LPFLDPLMGKLLAALE 470 (721)
Q Consensus 455 ~~~~~~i~~~l~~~l~ 470 (721)
.-|-+.++..+.+.+.
T Consensus 121 ~vF~~~~l~~i~~~l~ 136 (144)
T 1sz9_A 121 PLFEGSALEKIEQFLI 136 (144)
T ss_dssp CSSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 2244455555554443
No 178
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=31.16 E-value=1e+02 Score=27.72 Aligned_cols=71 Identities=10% Similarity=0.054 Sum_probs=50.3
Q ss_pred HHHHHHhhcCCCCHhHHHHHHH----HHHHHHhhhhHHHHHhhhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhh
Q 004960 379 VLHIVLGALRDPEQFVRGAASF----ALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMG 451 (721)
Q Consensus 379 i~~~l~~~l~d~~~~vr~~a~~----~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~ 451 (721)
..+.+.....+++.-+|..+.. .+..+.....+ ...+..++..+...+.+++..|+.+..|+|..+....+
T Consensus 109 ~~~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~--~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~~~ 183 (235)
T 1t06_A 109 AQDVADKWIASGDELKMSAGWSCYCWLLGNRKDNAFS--ESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAISYV 183 (235)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSC--HHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHhhccccCcC--hhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhhCH
Confidence 3455667778999999988887 44442211101 24567778888888999999999999999988876543
No 179
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=24.79 E-value=1.1e+02 Score=27.81 Aligned_cols=98 Identities=17% Similarity=0.162 Sum_probs=58.5
Q ss_pred CCChhHHHHHHHHHHHhhhhhh-cC---CCHHHHHHHHHHHHHHHhh---c----CCHHHHHHHHHHHHHHHccccCCCC
Q 004960 47 AKTPNVRQLAAVLLRKKITGHW-AK---LSPQLKQLVKQSLIESITL---E----HSAPVRRASANVVSIIAKYAVPAGE 115 (721)
Q Consensus 47 ~~~~~vr~~a~~~l~~~i~~~w-~~---~~~~~~~~i~~~ll~~l~~---e----~~~~vr~~~~~~l~~i~~~~~~~~~ 115 (721)
+.++..+.++...+.|.+...+ .. .+. .+...+++.+.+ + ++.++|..++..+-.++........
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~----~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~ 176 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESN----QVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS 176 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSH----HHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcc----hhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc
Confidence 4467899999999999987643 21 122 233444544421 1 3567777777777666543221111
Q ss_pred CcchHHHHHHhccC---------CcHHHHHHHHHHHHHhhhh
Q 004960 116 WPDLLPFLFQFSQS---------EQEEHREVALILFSSLTET 148 (721)
Q Consensus 116 ~~~ll~~l~~~l~~---------~~~~~~~~al~~l~~i~~~ 148 (721)
-.++...+.+.+.. .+.+..+.++.++|.++..
T Consensus 177 ~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~ 218 (253)
T 3gae_A 177 DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 218 (253)
T ss_dssp CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhC
Confidence 24555666665542 2567778889999988843
No 180
>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase; 2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A* 2x6j_A* 2x6k_A*
Probab=24.43 E-value=3.1e+02 Score=29.28 Aligned_cols=66 Identities=23% Similarity=0.211 Sum_probs=46.8
Q ss_pred CChHHHHHHHHHHHHHhcCCCcHHHHHHHHhcC-CChhHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHHHHHHhhc
Q 004960 15 PDNDARRQAEDQIKRLAKDPQVVPALVQHLRTA-KTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLE 90 (721)
Q Consensus 15 ~d~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~-~~~~vr~~a~~~l~~~i~~~w~~~~~~~~~~i~~~ll~~l~~e 90 (721)
.+.++.++|.+.|..+. |--+...+++|... .++.||.+|+..|++. +++......-.|.|+|.-|
T Consensus 89 ~~~~e~~~a~~lL~~W~--~~~~~dALeLL~~~f~~~~VR~yAV~~L~~~--------~de~L~~YLlQLVQALKyE 155 (696)
T 2x6h_A 89 KLEDEVTQALWMLANWA--PMDVEDALELLSPTFTHPQVRKYAVSRLAQA--------PDEDLLLYLLQLVQALKYE 155 (696)
T ss_dssp SCHHHHHHHHHHHHHSC--CCCHHHHHHHHSTTCCCHHHHHHHHHHHHHS--------CHHHHHHHHHHHHHHGGGS
T ss_pred CCHHHHHHHHHHHhcCC--CCCHHHHHHHhcccCCCHHHHHHHHHHHHhC--------ChHHHHHHHHHHHHHHHhc
Confidence 36667777777776663 32245556677553 6899999999887663 6677777777889999876
No 181
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E
Probab=24.23 E-value=1.4e+02 Score=25.25 Aligned_cols=53 Identities=17% Similarity=0.253 Sum_probs=38.0
Q ss_pred HHHHHHHccccCCCCCcchHHHHHHhc-cC--CcHHHHHHHHHHHHHhhhhhhhcc
Q 004960 101 NVVSIIAKYAVPAGEWPDLLPFLFQFS-QS--EQEEHREVALILFSSLTETIGQTF 153 (721)
Q Consensus 101 ~~l~~i~~~~~~~~~~~~ll~~l~~~l-~~--~~~~~~~~al~~l~~i~~~~~~~~ 153 (721)
..++.|++..+....++++++.|...+ ++ .+|....-||.++..++...++.+
T Consensus 53 ~~m~eIa~~T~~~~~~~~Im~~L~kRl~~~~~k~WR~vyKaL~LLeYLl~nGse~v 108 (176)
T 1xgw_A 53 QLMGEIAKATFMYEQFPELMNMLWSRMLKDNKKNWRRVYKSLLLLAYLIRNGSERV 108 (176)
T ss_dssp HHHHHHHHHTTCTTTHHHHHHHHHHHHHSSCTTCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHhcChhhHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhCCHHH
Confidence 344556554333347899999998885 43 578888899999999998776543
Done!